Query 001727
Match_columns 1020
No_of_seqs 96 out of 112
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 07:52:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001727.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001727hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05911 DUF869: Plant protein 100.0 1E-195 3E-200 1703.5 63.4 760 66-890 1-768 (769)
2 TIGR02169 SMC_prok_A chromosom 98.4 0.011 2.3E-07 74.3 46.3 21 863-883 953-973 (1164)
3 COG1196 Smc Chromosome segrega 98.3 0.035 7.6E-07 71.6 47.3 54 48-101 233-286 (1163)
4 TIGR02168 SMC_prok_B chromosom 97.9 0.19 4.2E-06 63.0 50.6 17 866-882 963-979 (1179)
5 TIGR02169 SMC_prok_A chromosom 97.5 0.67 1.4E-05 58.7 50.9 47 326-372 453-499 (1164)
6 COG1196 Smc Chromosome segrega 96.9 2.9 6.2E-05 54.6 47.5 85 744-828 814-898 (1163)
7 PF05911 DUF869: Plant protein 96.8 0.03 6.6E-07 69.3 16.8 207 585-814 498-715 (769)
8 KOG4674 Uncharacterized conser 96.8 1.2 2.7E-05 59.7 31.2 104 157-273 917-1020(1822)
9 PRK09039 hypothetical protein; 96.7 0.026 5.6E-07 64.0 14.7 145 710-880 40-184 (343)
10 KOG0161 Myosin class II heavy 96.7 5.1 0.00011 54.8 43.9 46 717-762 1373-1418(1930)
11 TIGR02168 SMC_prok_B chromosom 96.3 5.4 0.00012 50.5 49.2 48 326-373 438-485 (1179)
12 PF00261 Tropomyosin: Tropomyo 95.6 0.27 5.9E-06 52.9 14.4 148 721-882 41-190 (237)
13 PF09726 Macoilin: Transmembra 95.4 0.96 2.1E-05 56.2 19.9 146 86-239 422-574 (697)
14 PF00261 Tropomyosin: Tropomyo 95.2 0.75 1.6E-05 49.6 16.4 146 718-882 3-162 (237)
15 PRK02224 chromosome segregatio 94.7 17 0.00036 45.9 50.8 48 326-373 347-394 (880)
16 KOG0977 Nuclear envelope prote 94.3 8.1 0.00018 47.1 23.0 279 46-360 41-360 (546)
17 PF07888 CALCOCO1: Calcium bin 94.1 5.9 0.00013 48.2 21.4 80 154-233 208-301 (546)
18 PF05557 MAD: Mitotic checkpoi 94.0 0.35 7.6E-06 59.7 11.5 126 199-351 501-636 (722)
19 PF15254 CCDC14: Coiled-coil d 93.7 0.9 2E-05 56.3 13.8 92 149-275 445-547 (861)
20 KOG0161 Myosin class II heavy 93.6 44 0.00096 46.4 44.5 42 621-662 1385-1426(1930)
21 PRK04778 septation ring format 93.4 8.8 0.00019 46.6 21.5 135 152-286 310-449 (569)
22 KOG0996 Structural maintenance 93.3 37 0.00081 44.7 45.8 214 45-292 346-560 (1293)
23 PF12718 Tropomyosin_1: Tropom 93.3 2 4.4E-05 43.6 13.6 62 762-823 77-138 (143)
24 KOG0612 Rho-associated, coiled 93.1 16 0.00034 48.0 23.6 63 205-270 627-694 (1317)
25 KOG0996 Structural maintenance 92.8 2.3 5E-05 54.9 15.8 137 746-882 435-584 (1293)
26 PF05701 WEMBL: Weak chloropla 92.4 2.6 5.5E-05 50.7 15.1 154 718-887 220-384 (522)
27 PF10473 CENP-F_leu_zip: Leuci 92.3 7.2 0.00016 39.9 15.9 89 740-835 27-115 (140)
28 KOG4593 Mitotic checkpoint pro 92.3 22 0.00048 44.4 22.5 135 187-344 440-575 (716)
29 PF12718 Tropomyosin_1: Tropom 92.0 4.6 9.9E-05 41.1 14.2 75 738-812 15-92 (143)
30 KOG0933 Structural maintenance 91.2 60 0.0013 42.4 36.2 142 715-882 747-892 (1174)
31 PF12128 DUF3584: Protein of u 90.9 7.2 0.00016 51.3 17.9 135 41-177 601-750 (1201)
32 PRK11637 AmiB activator; Provi 90.6 19 0.0004 42.1 19.2 47 720-766 72-118 (428)
33 PF00038 Filament: Intermediat 89.9 35 0.00077 37.7 21.3 97 121-231 13-112 (312)
34 PF04156 IncA: IncA protein; 89.9 7 0.00015 40.4 13.6 43 731-773 82-124 (191)
35 PF13851 GAS: Growth-arrest sp 89.8 21 0.00046 38.2 17.3 147 159-375 41-190 (201)
36 PF15619 Lebercilin: Ciliary p 89.7 18 0.0004 38.7 16.7 113 148-283 9-123 (194)
37 PHA02562 46 endonuclease subun 89.4 23 0.00049 42.2 19.0 65 779-843 227-292 (562)
38 PF05701 WEMBL: Weak chloropla 89.3 59 0.0013 39.5 28.8 175 46-236 68-263 (522)
39 PF07888 CALCOCO1: Calcium bin 89.3 64 0.0014 39.7 25.0 77 148-224 160-236 (546)
40 KOG4673 Transcription factor T 89.3 28 0.00061 43.5 19.4 182 86-299 427-623 (961)
41 PF08614 ATG16: Autophagy prot 89.2 2 4.3E-05 45.1 9.1 95 125-220 83-177 (194)
42 COG1579 Zn-ribbon protein, pos 89.2 14 0.0003 40.9 15.7 107 723-834 31-137 (239)
43 PRK04778 septation ring format 89.2 13 0.00029 45.1 17.2 162 718-884 277-441 (569)
44 PF04849 HAP1_N: HAP1 N-termin 89.0 8.8 0.00019 43.8 14.4 157 48-212 98-287 (306)
45 PF15070 GOLGA2L5: Putative go 88.8 40 0.00086 42.0 20.8 223 121-375 2-249 (617)
46 PF09726 Macoilin: Transmembra 88.8 13 0.00028 46.6 17.0 149 737-914 538-686 (697)
47 PF08317 Spc7: Spc7 kinetochor 88.7 18 0.00039 41.0 16.8 39 793-831 209-247 (325)
48 smart00787 Spc7 Spc7 kinetocho 88.7 7.9 0.00017 44.1 13.9 126 620-772 135-260 (312)
49 KOG0612 Rho-associated, coiled 88.0 1.1E+02 0.0024 40.9 25.2 220 54-300 475-740 (1317)
50 PF08317 Spc7: Spc7 kinetochor 87.7 10 0.00022 43.0 14.0 115 620-761 140-254 (325)
51 TIGR01843 type_I_hlyD type I s 87.5 36 0.00079 38.5 18.3 37 855-894 247-283 (423)
52 PF12128 DUF3584: Protein of u 87.4 1.2E+02 0.0025 40.6 45.1 23 862-884 772-794 (1201)
53 KOG0946 ER-Golgi vesicle-tethe 87.4 25 0.00054 44.7 17.7 97 720-816 661-767 (970)
54 PRK11637 AmiB activator; Provi 87.1 50 0.0011 38.7 19.6 13 121-133 45-57 (428)
55 KOG4673 Transcription factor T 87.0 96 0.0021 39.2 24.3 287 45-358 428-773 (961)
56 PF08614 ATG16: Autophagy prot 86.7 2.5 5.5E-05 44.3 8.0 95 714-808 79-173 (194)
57 KOG4593 Mitotic checkpoint pro 86.6 49 0.0011 41.5 19.5 134 205-364 500-641 (716)
58 PF10174 Cast: RIM-binding pro 86.4 26 0.00055 44.7 17.6 97 178-277 438-548 (775)
59 PRK04863 mukB cell division pr 85.7 1E+02 0.0022 42.3 23.3 58 715-772 285-342 (1486)
60 COG1579 Zn-ribbon protein, pos 85.6 46 0.00099 37.0 17.1 91 142-233 8-100 (239)
61 PF09787 Golgin_A5: Golgin sub 85.5 52 0.0011 39.7 19.0 17 178-194 244-260 (511)
62 PHA02562 46 endonuclease subun 85.3 42 0.0009 40.0 18.0 74 794-879 331-404 (562)
63 PF12329 TMF_DNA_bd: TATA elem 85.2 6.8 0.00015 35.9 9.0 69 156-224 2-70 (74)
64 PF14662 CCDC155: Coiled-coil 85.2 33 0.00071 37.1 15.2 110 715-831 66-189 (193)
65 TIGR00606 rad50 rad50. This fa 85.1 1.6E+02 0.0034 39.8 49.4 94 782-884 825-918 (1311)
66 PF15070 GOLGA2L5: Putative go 85.0 50 0.0011 41.1 18.8 110 627-767 27-138 (617)
67 KOG1003 Actin filament-coating 84.7 27 0.00059 37.9 14.3 159 717-884 5-174 (205)
68 KOG0250 DNA repair protein RAD 84.6 1.5E+02 0.0033 39.2 48.6 61 710-770 655-715 (1074)
69 PRK04863 mukB cell division pr 84.2 1.2E+02 0.0025 41.8 22.8 27 856-882 444-470 (1486)
70 KOG4807 F-actin binding protei 83.5 1.1E+02 0.0023 36.6 20.9 116 46-164 244-379 (593)
71 PF01576 Myosin_tail_1: Myosin 83.5 0.35 7.6E-06 61.1 0.0 173 44-230 71-272 (859)
72 PF04156 IncA: IncA protein; 83.2 39 0.00085 34.9 14.7 49 744-792 102-150 (191)
73 PF09730 BicD: Microtubule-ass 83.0 41 0.00089 42.6 17.1 164 715-878 271-464 (717)
74 PF10186 Atg14: UV radiation r 83.0 42 0.00091 36.3 15.5 77 121-197 25-101 (302)
75 PRK09039 hypothetical protein; 82.9 25 0.00055 40.4 14.4 46 781-826 153-199 (343)
76 PF03148 Tektin: Tektin family 82.3 35 0.00076 39.8 15.4 115 121-235 227-365 (384)
77 PF04849 HAP1_N: HAP1 N-termin 82.3 1E+02 0.0022 35.5 18.5 201 143-376 81-303 (306)
78 KOG0288 WD40 repeat protein Ti 82.2 16 0.00035 43.1 12.4 112 125-250 1-112 (459)
79 COG4942 Membrane-bound metallo 82.0 31 0.00066 41.1 14.7 70 746-815 40-109 (420)
80 KOG0250 DNA repair protein RAD 81.8 1.4E+02 0.003 39.5 21.2 42 722-763 287-328 (1074)
81 PRK10884 SH3 domain-containing 81.7 9.7 0.00021 41.1 9.9 31 146-176 112-142 (206)
82 KOG0977 Nuclear envelope prote 81.7 25 0.00054 43.1 14.2 78 715-792 112-189 (546)
83 KOG0976 Rho/Rac1-interacting s 81.5 19 0.00041 45.6 13.1 95 148-249 95-194 (1265)
84 COG3883 Uncharacterized protei 81.1 1E+02 0.0023 34.9 19.0 147 716-882 38-224 (265)
85 PF00038 Filament: Intermediat 80.8 98 0.0021 34.3 23.6 52 48-99 83-134 (312)
86 KOG0804 Cytoplasmic Zn-finger 80.7 31 0.00067 41.3 14.1 19 814-832 428-446 (493)
87 PRK03918 chromosome segregatio 80.5 1.7E+02 0.0037 37.0 51.5 16 257-272 283-298 (880)
88 PF05010 TACC: Transforming ac 80.0 59 0.0013 35.4 15.0 91 737-830 111-205 (207)
89 PRK03918 chromosome segregatio 79.9 1.8E+02 0.0039 36.8 48.3 28 205-232 304-331 (880)
90 KOG2991 Splicing regulator [RN 79.5 69 0.0015 36.2 15.4 164 714-879 106-289 (330)
91 PF09304 Cortex-I_coil: Cortex 79.3 24 0.00053 34.9 10.7 69 748-816 13-81 (107)
92 PF00769 ERM: Ezrin/radixin/mo 78.9 36 0.00079 37.5 13.3 65 724-788 6-70 (246)
93 PF06818 Fez1: Fez1; InterPro 78.8 30 0.00065 37.6 12.3 90 126-227 17-106 (202)
94 PF09755 DUF2046: Uncharacteri 78.7 1.3E+02 0.0029 34.7 21.7 117 135-275 74-203 (310)
95 PF09755 DUF2046: Uncharacteri 78.4 1.3E+02 0.0028 34.9 17.5 32 324-355 180-212 (310)
96 PF08826 DMPK_coil: DMPK coile 78.1 12 0.00026 33.6 7.6 46 766-811 12-57 (61)
97 PF13851 GAS: Growth-arrest sp 77.9 1.1E+02 0.0023 33.0 19.5 174 92-292 12-189 (201)
98 PF14662 CCDC155: Coiled-coil 77.7 86 0.0019 34.0 15.1 114 714-834 20-143 (193)
99 PF10473 CENP-F_leu_zip: Leuci 77.3 94 0.002 32.1 15.6 86 736-831 51-136 (140)
100 PF05667 DUF812: Protein of un 76.4 69 0.0015 39.8 16.0 79 793-878 447-529 (594)
101 PF10212 TTKRSYEDQ: Predicted 76.2 34 0.00075 41.6 13.0 93 715-810 419-511 (518)
102 PF09789 DUF2353: Uncharacteri 76.0 66 0.0014 37.2 14.7 85 156-242 83-167 (319)
103 PF07926 TPR_MLP1_2: TPR/MLP1/ 76.0 89 0.0019 31.2 16.7 31 785-815 58-88 (132)
104 PF05667 DUF812: Protein of un 75.8 95 0.0021 38.6 16.9 154 715-880 327-480 (594)
105 KOG0980 Actin-binding protein 75.6 63 0.0014 41.6 15.3 67 789-874 455-521 (980)
106 PF10186 Atg14: UV radiation r 74.9 1E+02 0.0022 33.4 15.3 37 200-236 69-105 (302)
107 PF07989 Microtub_assoc: Micro 74.8 15 0.00032 34.0 7.5 65 205-275 4-68 (75)
108 PF09787 Golgin_A5: Golgin sub 74.1 58 0.0012 39.4 14.4 29 248-276 353-381 (511)
109 TIGR01005 eps_transp_fam exopo 74.0 1.3E+02 0.0028 37.7 17.9 31 716-746 237-267 (754)
110 KOG1029 Endocytic adaptor prot 74.0 1.1E+02 0.0024 39.2 16.6 159 726-901 461-633 (1118)
111 KOG1003 Actin filament-coating 73.5 84 0.0018 34.3 13.7 115 718-832 83-197 (205)
112 KOG0018 Structural maintenance 72.9 77 0.0017 41.6 15.4 149 713-880 649-800 (1141)
113 KOG0995 Centromere-associated 72.9 2.5E+02 0.0054 35.0 24.1 265 509-833 106-393 (581)
114 PRK02224 chromosome segregatio 72.5 2.8E+02 0.0061 35.4 50.9 51 717-768 573-623 (880)
115 COG4026 Uncharacterized protei 72.4 29 0.00062 38.4 10.1 70 721-790 133-202 (290)
116 KOG0933 Structural maintenance 72.4 3.3E+02 0.0072 36.2 35.5 88 725-812 789-876 (1174)
117 TIGR01843 type_I_hlyD type I s 71.4 1.5E+02 0.0031 33.8 16.1 15 986-1000 395-409 (423)
118 PF09304 Cortex-I_coil: Cortex 71.1 46 0.001 33.0 10.3 94 149-279 6-99 (107)
119 KOG1029 Endocytic adaptor prot 70.0 83 0.0018 40.2 14.3 115 714-831 484-612 (1118)
120 PRK11281 hypothetical protein; 69.2 1.5E+02 0.0032 39.7 17.3 57 219-275 196-252 (1113)
121 COG2433 Uncharacterized conser 68.5 56 0.0012 40.6 12.5 80 744-827 429-508 (652)
122 TIGR00606 rad50 rad50. This fa 68.4 4.3E+02 0.0093 35.8 54.2 50 326-375 575-624 (1311)
123 TIGR02680 conserved hypothetic 68.4 1.6E+02 0.0036 39.9 17.9 120 715-834 275-395 (1353)
124 PF06160 EzrA: Septation ring 68.1 3E+02 0.0065 33.9 22.0 133 747-884 302-437 (560)
125 PRK01156 chromosome segregatio 67.6 3.6E+02 0.0077 34.6 23.2 222 589-880 111-375 (895)
126 PF08826 DMPK_coil: DMPK coile 67.4 22 0.00048 31.9 6.8 41 725-765 13-53 (61)
127 KOG0976 Rho/Rac1-interacting s 67.3 93 0.002 39.9 14.0 90 713-805 82-171 (1265)
128 PF14915 CCDC144C: CCDC144C pr 67.1 1.1E+02 0.0025 35.1 13.7 192 44-270 88-291 (305)
129 PRK12704 phosphodiesterase; Pr 66.8 2.7E+02 0.0059 34.2 17.9 31 138-168 54-84 (520)
130 PRK10884 SH3 domain-containing 66.5 58 0.0013 35.3 11.1 25 714-738 91-115 (206)
131 KOG0243 Kinesin-like protein [ 66.3 1.4E+02 0.003 39.4 15.8 17 864-880 563-579 (1041)
132 COG2433 Uncharacterized conser 66.2 75 0.0016 39.6 12.9 124 115-273 385-511 (652)
133 KOG1899 LAR transmembrane tyro 66.1 99 0.0021 38.7 13.7 84 716-806 111-194 (861)
134 smart00787 Spc7 Spc7 kinetocho 65.9 1.8E+02 0.004 33.4 15.4 79 794-884 205-287 (312)
135 KOG0980 Actin-binding protein 65.3 1.9E+02 0.0041 37.6 16.3 47 184-230 470-516 (980)
136 KOG0978 E3 ubiquitin ligase in 64.5 1.6E+02 0.0035 37.4 15.6 70 185-275 550-619 (698)
137 PF10174 Cast: RIM-binding pro 64.3 4.2E+02 0.0092 34.3 40.8 97 736-833 464-560 (775)
138 PF09728 Taxilin: Myosin-like 64.0 2.7E+02 0.0059 32.0 17.7 198 46-271 102-307 (309)
139 TIGR01000 bacteriocin_acc bact 63.8 2.8E+02 0.006 32.9 16.9 34 740-773 168-201 (457)
140 PF12325 TMF_TATA_bd: TATA ele 62.9 1.1E+02 0.0024 30.8 11.4 96 715-828 15-110 (120)
141 TIGR03007 pepcterm_ChnLen poly 62.4 3.3E+02 0.0071 32.4 17.2 62 714-775 166-235 (498)
142 PF05483 SCP-1: Synaptonemal c 62.3 90 0.002 39.4 12.6 134 728-877 231-365 (786)
143 PF13514 AAA_27: AAA domain 62.2 5.1E+02 0.011 34.5 23.3 50 326-375 901-952 (1111)
144 PF15294 Leu_zip: Leucine zipp 62.0 1.4E+02 0.0029 34.2 13.1 38 714-751 137-174 (278)
145 PRK15422 septal ring assembly 61.7 68 0.0015 30.4 9.0 48 726-773 7-54 (79)
146 PF10205 KLRAQ: Predicted coil 61.5 66 0.0014 31.7 9.3 68 167-234 6-73 (102)
147 PF05557 MAD: Mitotic checkpoi 61.0 2.8 6E-05 52.1 0.0 23 251-273 251-273 (722)
148 KOG0978 E3 ubiquitin ligase in 60.2 2.3E+02 0.005 36.1 15.8 120 716-835 496-622 (698)
149 PF14197 Cep57_CLD_2: Centroso 59.2 56 0.0012 29.9 7.9 63 749-811 3-65 (69)
150 PF04111 APG6: Autophagy prote 58.7 93 0.002 35.6 11.4 9 657-665 303-311 (314)
151 KOG0249 LAR-interacting protei 58.5 4E+02 0.0087 34.3 17.1 220 121-374 30-258 (916)
152 PF02994 Transposase_22: L1 tr 58.3 21 0.00046 41.4 6.5 98 737-834 91-192 (370)
153 KOG1962 B-cell receptor-associ 57.8 95 0.0021 34.2 10.8 65 770-834 149-213 (216)
154 PF07926 TPR_MLP1_2: TPR/MLP1/ 57.0 2.1E+02 0.0047 28.5 16.0 25 718-742 12-36 (132)
155 COG5185 HEC1 Protein involved 56.3 4.7E+02 0.01 32.3 17.4 148 715-881 270-420 (622)
156 PF10498 IFT57: Intra-flagella 55.9 1.4E+02 0.0031 35.0 12.5 40 626-665 221-260 (359)
157 TIGR01005 eps_transp_fam exopo 55.4 1.1E+02 0.0024 38.3 12.4 36 732-767 189-224 (754)
158 TIGR03007 pepcterm_ChnLen poly 55.2 1.5E+02 0.0032 35.2 12.7 28 853-880 323-350 (498)
159 KOG0999 Microtubule-associated 54.4 3.7E+02 0.008 33.7 15.6 79 204-294 46-134 (772)
160 KOG1962 B-cell receptor-associ 53.7 48 0.001 36.4 7.7 62 714-775 149-210 (216)
161 PF10146 zf-C4H2: Zinc finger- 53.6 2.6E+02 0.0057 31.0 13.4 83 145-234 8-93 (230)
162 PF07106 TBPIP: Tat binding pr 53.4 1E+02 0.0023 31.7 9.8 18 745-762 87-104 (169)
163 PF03980 Nnf1: Nnf1 ; InterPr 53.4 87 0.0019 30.0 8.7 30 201-230 80-109 (109)
164 PF10146 zf-C4H2: Zinc finger- 53.1 1.9E+02 0.0042 32.0 12.3 48 788-835 55-102 (230)
165 TIGR02449 conserved hypothetic 52.8 1E+02 0.0022 28.2 8.4 56 156-215 4-63 (65)
166 TIGR03017 EpsF chain length de 52.6 1.7E+02 0.0036 34.1 12.4 36 734-769 168-203 (444)
167 PF09738 DUF2051: Double stran 52.2 94 0.002 35.7 10.1 87 188-275 78-165 (302)
168 PF11932 DUF3450: Protein of u 51.9 1.4E+02 0.0031 32.6 11.1 49 714-762 40-88 (251)
169 PF12795 MscS_porin: Mechanose 51.7 3.5E+02 0.0076 29.4 14.2 128 132-274 80-209 (240)
170 TIGR03319 YmdA_YtgF conserved 50.9 5.6E+02 0.012 31.5 17.8 29 140-168 50-78 (514)
171 TIGR02977 phageshock_pspA phag 50.7 3.3E+02 0.0072 29.4 13.5 39 796-834 95-133 (219)
172 KOG0963 Transcription factor/C 50.3 6.4E+02 0.014 32.0 18.2 129 754-882 185-331 (629)
173 PF03962 Mnd1: Mnd1 family; I 50.1 88 0.0019 33.3 8.9 80 205-292 66-146 (188)
174 PF14073 Cep57_CLD: Centrosome 49.9 3.7E+02 0.0079 29.1 14.0 20 254-273 117-136 (178)
175 PF07106 TBPIP: Tat binding pr 49.5 68 0.0015 33.0 7.8 11 714-724 70-80 (169)
176 KOG4809 Rab6 GTPase-interactin 49.3 5.6E+02 0.012 32.1 16.0 17 239-255 474-490 (654)
177 PF11559 ADIP: Afadin- and alp 49.1 2.9E+02 0.0063 27.9 12.1 63 716-778 52-114 (151)
178 PF14197 Cep57_CLD_2: Centroso 49.0 1.1E+02 0.0025 27.9 8.2 39 151-192 4-42 (69)
179 PF15066 CAGE1: Cancer-associa 48.5 2.4E+02 0.0053 34.4 12.8 63 173-238 446-508 (527)
180 PF14988 DUF4515: Domain of un 48.2 4E+02 0.0086 29.0 16.1 75 148-226 36-110 (206)
181 TIGR02231 conserved hypothetic 48.1 1.1E+02 0.0025 36.7 10.5 37 715-751 70-106 (525)
182 PF11559 ADIP: Afadin- and alp 48.1 3.1E+02 0.0067 27.7 13.7 8 263-270 139-146 (151)
183 PF14073 Cep57_CLD: Centrosome 47.8 3.9E+02 0.0085 28.9 14.6 120 713-832 8-152 (178)
184 COG3074 Uncharacterized protei 47.7 2.1E+02 0.0046 26.8 9.6 46 726-771 7-52 (79)
185 PRK10929 putative mechanosensi 46.5 7.2E+02 0.016 33.6 17.8 57 219-275 177-233 (1109)
186 PF12329 TMF_DNA_bd: TATA elem 46.5 1.5E+02 0.0032 27.4 8.6 58 745-809 6-63 (74)
187 KOG1265 Phospholipase C [Lipid 45.7 3.3E+02 0.0072 35.8 13.9 94 44-146 1026-1137(1189)
188 PF04111 APG6: Autophagy prote 45.6 2.7E+02 0.006 31.9 12.5 33 201-233 85-117 (314)
189 TIGR00634 recN DNA repair prot 45.4 5.1E+02 0.011 31.8 15.5 43 793-835 301-343 (563)
190 cd00632 Prefoldin_beta Prefold 45.3 2.8E+02 0.0062 26.5 11.2 32 780-811 57-88 (105)
191 PRK03947 prefoldin subunit alp 45.3 3.3E+02 0.0071 27.2 12.0 46 783-828 91-136 (140)
192 KOG0239 Kinesin (KAR3 subfamil 45.0 4.5E+02 0.0098 33.5 15.2 62 171-232 208-272 (670)
193 TIGR02680 conserved hypothetic 44.9 3.6E+02 0.0077 36.9 15.2 19 880-898 1274-1292(1353)
194 PF01576 Myosin_tail_1: Myosin 44.1 7.5 0.00016 49.6 0.0 157 89-272 468-624 (859)
195 KOG3215 Uncharacterized conser 44.1 2.2E+02 0.0049 31.4 10.7 105 714-827 87-191 (222)
196 PF05546 She9_MDM33: She9 / Md 44.0 3.2E+02 0.0069 30.2 12.0 106 716-825 32-139 (207)
197 PF15066 CAGE1: Cancer-associa 43.7 7.2E+02 0.016 30.7 19.0 157 624-831 364-520 (527)
198 PF13870 DUF4201: Domain of un 43.4 4E+02 0.0086 27.7 12.8 100 155-254 23-130 (177)
199 PF10481 CENP-F_N: Cenp-F N-te 43.2 5.2E+02 0.011 29.9 13.6 109 718-833 20-128 (307)
200 KOG0243 Kinesin-like protein [ 43.1 4.1E+02 0.0088 35.5 14.5 67 762-831 480-549 (1041)
201 PF13094 CENP-Q: CENP-Q, a CEN 43.1 1.2E+02 0.0025 31.1 8.3 52 784-835 32-83 (160)
202 PRK11519 tyrosine kinase; Prov 42.8 3.2E+02 0.007 34.5 13.6 44 727-770 257-300 (719)
203 KOG0962 DNA repair protein RAD 42.7 4.3E+02 0.0092 36.1 14.8 86 714-803 207-292 (1294)
204 KOG0972 Huntingtin interacting 42.6 2.1E+02 0.0046 33.1 10.7 81 148-238 230-310 (384)
205 PRK12704 phosphodiesterase; Pr 42.4 4.7E+02 0.01 32.2 14.4 35 130-164 35-69 (520)
206 COG3074 Uncharacterized protei 42.3 1.6E+02 0.0034 27.7 7.9 41 189-229 27-67 (79)
207 PF03148 Tektin: Tektin family 42.1 4.2E+02 0.009 31.2 13.5 109 721-829 263-381 (384)
208 KOG1937 Uncharacterized conser 42.0 3.5E+02 0.0076 33.1 12.7 95 782-878 328-427 (521)
209 PRK09841 cryptic autophosphory 42.0 3.2E+02 0.0069 34.6 13.4 45 726-770 256-300 (726)
210 COG1842 PspA Phage shock prote 41.9 5.2E+02 0.011 28.6 15.1 86 747-832 34-124 (225)
211 PF06785 UPF0242: Uncharacteri 41.4 4.2E+02 0.0091 31.3 12.9 89 732-820 94-182 (401)
212 PRK10698 phage shock protein P 41.1 5.2E+02 0.011 28.3 13.6 35 800-834 99-133 (222)
213 COG0497 RecN ATPase involved i 41.0 8.3E+02 0.018 30.7 22.8 122 209-376 263-388 (557)
214 KOG0971 Microtubule-associated 40.8 1E+03 0.023 31.7 17.9 99 173-279 948-1059(1243)
215 PF10168 Nup88: Nuclear pore c 40.4 9.2E+02 0.02 31.0 19.7 132 741-881 569-712 (717)
216 PHA02557 22 prohead core prote 40.3 1.9E+02 0.0041 33.0 9.8 144 67-213 44-202 (271)
217 COG4372 Uncharacterized protei 40.2 7.5E+02 0.016 30.0 15.6 69 731-799 110-178 (499)
218 PF12325 TMF_TATA_bd: TATA ele 40.0 4.1E+02 0.0089 26.8 12.2 25 715-739 36-60 (120)
219 KOG4360 Uncharacterized coiled 39.8 3.6E+02 0.0078 33.4 12.5 97 124-221 203-302 (596)
220 PF15619 Lebercilin: Ciliary p 39.8 5.2E+02 0.011 28.0 19.2 103 156-274 86-188 (194)
221 PF11932 DUF3450: Protein of u 39.5 5.5E+02 0.012 28.2 15.2 48 145-192 42-89 (251)
222 PRK00106 hypothetical protein; 39.1 8.6E+02 0.019 30.3 17.3 15 131-145 51-65 (535)
223 PF10234 Cluap1: Clusterin-ass 39.1 5.9E+02 0.013 29.1 13.5 39 724-762 170-208 (267)
224 TIGR01010 BexC_CtrB_KpsE polys 38.6 3.3E+02 0.0072 31.1 11.9 32 601-632 118-149 (362)
225 COG4026 Uncharacterized protei 38.4 5.4E+02 0.012 29.1 12.6 118 103-246 91-211 (290)
226 PRK06569 F0F1 ATP synthase sub 38.1 5.1E+02 0.011 27.4 13.9 84 126-218 33-120 (155)
227 PF00170 bZIP_1: bZIP transcri 37.6 83 0.0018 27.5 5.4 37 189-225 28-64 (64)
228 KOG2391 Vacuolar sorting prote 37.3 2.7E+02 0.0058 32.9 10.6 61 814-878 267-327 (365)
229 PF06005 DUF904: Protein of un 37.2 3.4E+02 0.0075 25.1 9.8 46 726-771 7-52 (72)
230 KOG4403 Cell surface glycoprot 37.0 2.1E+02 0.0045 34.7 9.9 44 135-179 236-279 (575)
231 PF05483 SCP-1: Synaptonemal c 36.9 1.1E+03 0.023 30.7 24.8 151 121-275 217-367 (786)
232 PRK15422 septal ring assembly 36.4 2.7E+02 0.0059 26.6 8.7 67 739-805 6-72 (79)
233 PF05266 DUF724: Protein of un 36.1 3.9E+02 0.0084 28.9 11.1 28 199-226 157-184 (190)
234 PF10304 DUF2411: Domain of un 36.0 28 0.00061 28.1 2.1 23 62-84 14-36 (36)
235 COG4942 Membrane-bound metallo 36.0 8.8E+02 0.019 29.5 20.1 178 44-232 63-248 (420)
236 TIGR01010 BexC_CtrB_KpsE polys 35.8 5E+02 0.011 29.7 12.7 23 715-737 176-198 (362)
237 TIGR03319 YmdA_YtgF conserved 35.4 6.9E+02 0.015 30.8 14.4 37 129-165 28-64 (514)
238 KOG0999 Microtubule-associated 35.4 6.2E+02 0.013 31.9 13.6 115 136-251 92-230 (772)
239 PF15397 DUF4618: Domain of un 35.2 6E+02 0.013 28.9 12.7 92 81-176 72-173 (258)
240 PF10154 DUF2362: Uncharacteri 35.1 6.1E+02 0.013 31.5 13.7 53 743-796 136-188 (510)
241 KOG0979 Structural maintenance 34.8 1.1E+03 0.025 31.5 16.4 153 716-881 181-352 (1072)
242 COG0419 SbcC ATPase involved i 34.7 1.2E+03 0.025 30.5 20.4 54 789-842 399-464 (908)
243 KOG2991 Splicing regulator [RN 34.6 5.5E+02 0.012 29.5 12.1 54 174-227 251-304 (330)
244 PF09738 DUF2051: Double stran 34.6 7E+02 0.015 28.9 13.4 159 715-873 111-302 (302)
245 PF12761 End3: Actin cytoskele 34.4 2E+02 0.0043 31.4 8.6 28 147-176 93-120 (195)
246 PRK15178 Vi polysaccharide exp 34.3 8.5E+02 0.018 29.7 14.5 81 735-815 240-336 (434)
247 PRK09841 cryptic autophosphory 34.2 4.5E+02 0.0097 33.4 13.0 112 714-832 272-402 (726)
248 KOG4643 Uncharacterized coiled 33.7 7.6E+02 0.016 33.2 14.5 106 215-340 170-276 (1195)
249 PF08702 Fib_alpha: Fibrinogen 33.6 5.6E+02 0.012 26.5 13.0 37 782-818 100-136 (146)
250 PF11365 DUF3166: Protein of u 33.5 2.1E+02 0.0045 28.1 7.8 82 727-808 5-91 (96)
251 PF15450 DUF4631: Domain of un 33.4 1E+03 0.023 29.6 17.4 38 334-373 454-491 (531)
252 PF09789 DUF2353: Uncharacteri 33.3 8.5E+02 0.018 28.6 16.8 93 780-880 127-222 (319)
253 TIGR03185 DNA_S_dndD DNA sulfu 33.3 1.1E+03 0.023 29.6 15.9 29 204-232 424-452 (650)
254 KOG3119 Basic region leucine z 33.0 76 0.0016 35.6 5.5 32 201-232 215-246 (269)
255 KOG4031 Vesicle coat protein c 32.9 1.9E+02 0.0041 32.0 8.1 54 122-175 102-159 (216)
256 PF07716 bZIP_2: Basic region 32.6 93 0.002 26.6 4.8 32 199-230 23-54 (54)
257 PF10211 Ax_dynein_light: Axon 32.6 2.5E+02 0.0054 30.0 9.0 61 715-775 126-187 (189)
258 KOG0804 Cytoplasmic Zn-finger 32.6 2.4E+02 0.0051 34.4 9.5 97 89-216 361-457 (493)
259 PF05622 HOOK: HOOK protein; 32.5 15 0.00032 45.8 0.0 20 205-224 456-475 (713)
260 KOG2196 Nuclear porin [Nuclear 32.3 3.9E+02 0.0084 30.3 10.5 48 715-762 112-159 (254)
261 TIGR03017 EpsF chain length de 32.2 6.5E+02 0.014 29.4 13.1 28 802-829 344-371 (444)
262 PF06810 Phage_GP20: Phage min 32.2 3.1E+02 0.0067 28.6 9.4 49 716-768 20-68 (155)
263 PF10481 CENP-F_N: Cenp-F N-te 31.9 6.5E+02 0.014 29.1 12.2 64 161-231 55-118 (307)
264 TIGR00634 recN DNA repair prot 31.9 1E+03 0.023 29.2 23.1 124 210-376 268-392 (563)
265 PF09728 Taxilin: Myosin-like 31.9 3.9E+02 0.0085 30.7 10.9 84 136-223 225-308 (309)
266 PRK10869 recombination and rep 31.3 1.1E+03 0.024 29.2 23.2 122 209-376 262-387 (553)
267 TIGR00998 8a0101 efflux pump m 31.2 6.9E+02 0.015 27.8 12.6 54 725-778 82-135 (334)
268 COG3206 GumC Uncharacterized p 31.2 6E+02 0.013 30.2 12.8 109 719-831 295-404 (458)
269 PRK12705 hypothetical protein; 31.0 1.1E+03 0.024 29.2 16.3 43 129-171 40-82 (508)
270 KOG0964 Structural maintenance 30.9 1.2E+03 0.027 31.3 15.7 30 732-761 260-289 (1200)
271 PF10205 KLRAQ: Predicted coil 30.8 4.8E+02 0.01 26.0 9.8 69 148-227 5-73 (102)
272 KOG0995 Centromere-associated 30.7 1.2E+03 0.026 29.5 26.7 51 326-376 430-480 (581)
273 PF06705 SF-assemblin: SF-asse 30.7 7.5E+02 0.016 27.1 15.9 73 762-834 60-134 (247)
274 COG3883 Uncharacterized protei 30.6 5.4E+02 0.012 29.4 11.5 49 718-766 33-81 (265)
275 PF07111 HCR: Alpha helical co 30.0 1E+03 0.022 30.8 14.5 96 715-816 477-572 (739)
276 KOG0239 Kinesin (KAR3 subfamil 30.0 6.6E+02 0.014 32.1 13.3 8 985-992 467-474 (670)
277 PF06818 Fez1: Fez1; InterPro 29.7 6.9E+02 0.015 27.6 11.7 94 716-816 10-103 (202)
278 KOG0946 ER-Golgi vesicle-tethe 29.6 1.5E+03 0.031 30.1 19.4 85 147-238 659-760 (970)
279 KOG3215 Uncharacterized conser 29.4 7.1E+02 0.015 27.8 11.6 35 62-96 27-61 (222)
280 KOG0971 Microtubule-associated 29.3 1.5E+03 0.033 30.3 22.1 109 154-271 271-382 (1243)
281 PF06160 EzrA: Septation ring 29.3 1.2E+03 0.026 28.9 21.7 41 625-665 277-317 (560)
282 PF15456 Uds1: Up-regulated Du 29.1 5.8E+02 0.013 25.9 10.4 45 711-763 17-61 (124)
283 PF15397 DUF4618: Domain of un 29.0 9.1E+02 0.02 27.5 15.3 195 46-274 15-224 (258)
284 TIGR01837 PHA_granule_1 poly(h 28.3 1.7E+02 0.0038 29.0 6.5 67 128-221 50-116 (118)
285 KOG4657 Uncharacterized conser 28.3 6.1E+02 0.013 28.6 11.1 61 715-775 57-117 (246)
286 PF09744 Jnk-SapK_ap_N: JNK_SA 28.1 6.1E+02 0.013 26.8 10.7 84 716-799 50-137 (158)
287 PF05622 HOOK: HOOK protein; 28.1 20 0.00042 44.8 0.0 134 743-879 192-326 (713)
288 PF05308 Mito_fiss_reg: Mitoch 28.1 48 0.001 37.0 3.0 25 249-273 114-138 (253)
289 COG0419 SbcC ATPase involved i 28.1 1.5E+03 0.032 29.6 19.0 48 228-275 388-435 (908)
290 PF00804 Syntaxin: Syntaxin; 27.9 2.6E+02 0.0057 25.2 7.3 87 257-367 14-101 (103)
291 PF14389 Lzipper-MIP1: Leucine 27.9 2.6E+02 0.0055 26.6 7.3 65 747-811 11-86 (88)
292 PRK10698 phage shock protein P 27.2 8.6E+02 0.019 26.7 13.7 112 718-830 33-150 (222)
293 TIGR02231 conserved hypothetic 27.2 4.1E+02 0.0089 32.2 10.6 63 156-222 75-145 (525)
294 KOG0018 Structural maintenance 26.9 5.6E+02 0.012 34.4 12.0 100 710-823 801-900 (1141)
295 KOG0964 Structural maintenance 26.8 1.7E+03 0.037 30.1 38.0 88 121-214 193-292 (1200)
296 KOG2629 Peroxisomal membrane a 26.8 2.2E+02 0.0047 32.9 7.6 76 196-281 124-201 (300)
297 PF05700 BCAS2: Breast carcino 26.6 5.8E+02 0.012 27.8 10.7 16 788-803 177-192 (221)
298 KOG1655 Protein involved in va 26.3 59 0.0013 35.4 3.1 26 256-281 32-57 (218)
299 KOG2685 Cystoskeletal protein 26.3 1.1E+03 0.024 28.6 13.5 45 142-186 275-319 (421)
300 PRK11519 tyrosine kinase; Prov 25.3 9.1E+02 0.02 30.7 13.5 35 798-832 368-402 (719)
301 PF10805 DUF2730: Protein of u 25.3 3.8E+02 0.0083 26.1 8.2 52 711-762 30-83 (106)
302 KOG0963 Transcription factor/C 25.2 1.5E+03 0.033 28.9 23.1 44 326-370 315-358 (629)
303 KOG4674 Uncharacterized conser 25.2 2.2E+03 0.049 30.9 50.5 284 42-373 541-882 (1822)
304 TIGR03752 conj_TIGR03752 integ 25.1 2.3E+02 0.005 34.6 7.9 68 201-274 66-133 (472)
305 KOG4643 Uncharacterized coiled 24.8 7.9E+02 0.017 33.0 12.6 49 715-763 501-549 (1195)
306 PF04012 PspA_IM30: PspA/IM30 24.8 8.7E+02 0.019 25.9 15.3 46 716-761 30-75 (221)
307 PF05266 DUF724: Protein of un 24.7 9.1E+02 0.02 26.1 13.8 27 808-834 160-186 (190)
308 KOG3647 Predicted coiled-coil 24.6 8.7E+02 0.019 28.2 11.6 94 721-814 110-203 (338)
309 KOG2264 Exostosin EXT1L [Signa 24.6 4.3E+02 0.0093 33.3 9.9 95 98-221 54-148 (907)
310 PF09731 Mitofilin: Mitochondr 24.3 9.3E+02 0.02 29.5 13.0 103 126-229 333-441 (582)
311 COG1842 PspA Phage shock prote 23.8 1E+03 0.022 26.4 14.4 94 716-809 31-136 (225)
312 PF01920 Prefoldin_2: Prefoldi 23.2 5.8E+02 0.013 23.6 8.7 43 782-831 58-100 (106)
313 PF10212 TTKRSYEDQ: Predicted 23.0 5.3E+02 0.011 32.0 10.4 76 721-799 439-514 (518)
314 KOG2008 BTK-associated SH3-dom 23.0 1.3E+03 0.028 27.3 21.6 47 326-379 188-234 (426)
315 PRK02119 hypothetical protein; 23.0 3.7E+02 0.008 24.8 7.2 46 717-762 3-48 (73)
316 PF07989 Microtub_assoc: Micro 22.9 5.3E+02 0.011 24.0 8.2 62 162-236 3-64 (75)
317 PF14282 FlxA: FlxA-like prote 22.8 4.9E+02 0.011 25.4 8.4 50 715-764 18-71 (106)
318 PF04012 PspA_IM30: PspA/IM30 22.8 9.4E+02 0.02 25.6 14.5 47 719-765 26-72 (221)
319 PF13805 Pil1: Eisosome compon 22.7 1.2E+03 0.026 26.8 13.4 39 752-790 166-206 (271)
320 cd00632 Prefoldin_beta Prefold 22.6 1.7E+02 0.0037 28.0 5.2 47 183-229 59-105 (105)
321 TIGR02449 conserved hypothetic 22.5 4.5E+02 0.0098 24.2 7.4 25 752-776 29-53 (65)
322 PRK00106 hypothetical protein; 22.5 1.3E+03 0.028 28.9 13.6 25 139-163 70-94 (535)
323 PF02183 HALZ: Homeobox associ 22.4 1.2E+02 0.0026 25.8 3.6 32 201-232 12-43 (45)
324 PF01920 Prefoldin_2: Prefoldi 22.3 6.3E+02 0.014 23.4 9.8 41 184-224 59-99 (106)
325 KOG3433 Protein involved in me 22.3 6.6E+02 0.014 27.6 9.7 86 151-250 80-166 (203)
326 PF06008 Laminin_I: Laminin Do 22.1 1.1E+03 0.023 26.1 14.5 108 725-834 26-140 (264)
327 PF09763 Sec3_C: Exocyst compl 22.0 9.8E+02 0.021 30.2 12.9 49 227-275 87-135 (701)
328 PF15254 CCDC14: Coiled-coil d 21.7 4.7E+02 0.01 33.9 9.8 45 149-193 495-542 (861)
329 PF05010 TACC: Transforming ac 21.7 1.1E+03 0.024 26.0 14.2 41 47-87 23-63 (207)
330 PF03962 Mnd1: Mnd1 family; I 21.6 6.4E+02 0.014 27.0 9.7 20 744-763 76-95 (188)
331 PRK09343 prefoldin subunit bet 21.5 8.1E+02 0.018 24.4 12.4 106 715-822 6-114 (121)
332 PF12761 End3: Actin cytoskele 21.3 4.7E+02 0.01 28.7 8.6 85 716-814 96-188 (195)
333 PF04899 MbeD_MobD: MbeD/MobD 21.2 5.5E+02 0.012 23.9 7.8 45 139-183 15-59 (70)
334 PRK11281 hypothetical protein; 21.2 9.1E+02 0.02 32.7 12.7 59 757-815 198-256 (1113)
335 PF06156 DUF972: Protein of un 21.2 2.1E+02 0.0046 28.2 5.6 35 198-232 19-53 (107)
336 PF10267 Tmemb_cc2: Predicted 21.1 9.6E+02 0.021 28.9 11.8 20 792-811 275-294 (395)
337 TIGR02338 gimC_beta prefoldin, 21.1 7.7E+02 0.017 23.9 10.2 89 717-805 4-107 (110)
338 PRK10476 multidrug resistance 20.9 1.2E+03 0.027 26.3 14.9 54 724-777 87-140 (346)
339 PF05377 FlaC_arch: Flagella a 20.6 2.8E+02 0.0061 24.8 5.6 33 155-187 3-35 (55)
340 PF13166 AAA_13: AAA domain 20.6 1.2E+03 0.027 28.9 13.3 9 942-950 534-542 (712)
341 KOG4809 Rab6 GTPase-interactin 20.6 1.8E+03 0.039 28.0 14.4 18 715-732 330-347 (654)
342 PRK08476 F0F1 ATP synthase sub 20.6 9E+02 0.019 24.5 13.3 50 125-178 29-78 (141)
343 smart00338 BRLZ basic region l 20.5 2.1E+02 0.0045 25.1 4.9 40 193-232 18-57 (65)
344 COG4717 Uncharacterized conser 20.4 2.1E+03 0.047 28.9 15.3 47 105-151 643-699 (984)
345 PF09730 BicD: Microtubule-ass 20.3 2E+03 0.043 28.4 45.7 235 138-377 21-321 (717)
346 COG1340 Uncharacterized archae 20.1 1.4E+03 0.031 26.6 16.6 67 190-256 203-270 (294)
347 PF06810 Phage_GP20: Phage min 20.1 7.4E+02 0.016 25.8 9.5 73 736-816 26-98 (155)
No 1
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=100.00 E-value=1.3e-195 Score=1703.54 Aligned_cols=760 Identities=44% Similarity=0.601 Sum_probs=668.7
Q ss_pred chHHHHHHHHHHHhhhccCcchhhHHHHHHHHhhhhcCCCCcccCCCCCCCCCCChhHHHHHhhhhhhhhHHHHHHHHHH
Q 001727 66 KDELMAKQAKLVQEAGAGQEKPEVAAAVVKKELDETLKPPLSANENLPYAGAATAPMKCVKQLNFDQAEQEQRVHDAVVK 145 (1020)
Q Consensus 66 Kd~lvkqhaKvaeEAv~GwEKae~E~~~lK~qLe~~~~~~~~~e~rv~hld~A~~LKeCmrQLr~~rEEqEq~i~eav~~ 145 (1020)
||+|||||+|||||||+||||||+||++||+|||+++++++++||||+||||| |||||||||++||||||+|||||++
T Consensus 1 k~~lvkqh~kvaeeav~gwekae~e~~~lk~~l~~~~~~~~~~e~r~~hld~a--Lkec~~qlr~~ree~eq~i~~~~~~ 78 (769)
T PF05911_consen 1 KDDLVKQHAKVAEEAVSGWEKAEAEAASLKQQLEAATQQKLALEDRVSHLDGA--LKECMRQLRQVREEQEQKIHEAVAK 78 (769)
T ss_pred CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHH--HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHhhhhHhhHHHHHHhhhhhhHhhhhhhhhHHH
Q 001727 146 TSGEFEKAQKELEKNLREANERIAKLAAENSHLSKALLVKEKMIEDLSKRKSQAEAEFSTLMTRLDVTEKENAFLKYEFR 225 (1020)
Q Consensus 146 ~s~e~ek~k~elE~kl~e~~~~l~~~~aEn~~Ls~al~~k~~~i~el~~~k~~ae~e~~~l~~rLe~~eKen~sLkyE~~ 225 (1020)
+|+||+|+|.+||++|++++++|+++++||++|+++|++|+++|.+|+++|++|+++|++|++||+++||||++||||||
T Consensus 79 ~s~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~ 158 (769)
T PF05911_consen 79 KSKEWEKIKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELH 158 (769)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhhhhhhHHHhhhhhhhhhHHHHhHHHHHHHHHHHhhhcCCCchHHHhhHHHHHhhccchhhhhcccC
Q 001727 226 ILEKELEIRNEEMEYTRRSVEATHKQHLESVKKVAKLEAECERLRLLVRKKLPGSAASAKMKSEVEMQGRDQMDMRRRKL 305 (1020)
Q Consensus 226 ~l~kELeiR~~Ere~~~~sae~a~KQhlEsvKKiakLEaECqRLR~lvRKklPgpAala~Mk~Eve~lg~d~~e~rrr~~ 305 (1020)
|++|||||||+||||++||||+|||||||+|||||||||||||||+||||||||||||||||+||+++|||++++|||++
T Consensus 159 ~~~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l~rk~lpgpaa~a~mk~ev~~~~~~~~~~r~r~~ 238 (769)
T PF05911_consen 159 VLSKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAECQRLRALVRKKLPGPAALAQMKNEVESLGRDSGENRRRRS 238 (769)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHhHHHHHHhccccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCcccccccccCCCc----chhh-HHHHHHhhHHhHHHHHHHHhhhhhhhhHHHhhhhhhhhhhhHHHHHHHHhhccCc
Q 001727 306 SPTRDLIVRHATTESS----HDIS-LLARLHDMEKENRTLKDIVITKSTELQASRMMFSRTASRLSYVESQLREICTGQK 380 (1020)
Q Consensus 306 ~~~~~~~~~~~~~~~~----~~~~-lt~rL~~~EeEnk~LKe~Lakkn~ELQ~sr~m~a~taskLs~le~ql~~ls~~q~ 380 (1020)
+++.+.+..+. ++++ .+++ ||+||++||||||||||+|++||+||||||+|||+|||||++||+|| +.+ +++
T Consensus 239 ~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~kL~~~e~ql-~~~-~~~ 315 (769)
T PF05911_consen 239 PSRPSSPHDFS-PQNPQKRSKESEFLTERLQAMEEENKMLKEALAKKNSELQFSRNMYAKTASKLSQLEAQL-KSS-GQV 315 (769)
T ss_pred CCccccccccc-ccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh-hcc
Confidence 66533332221 3332 2366 99999999999999999999999999999999999999999999999 455 999
Q ss_pred ccccccCCCCCCccccccc-cCCCCCCCCCccchhhhhhchhhhcccccccccCCCCccccccccccccHHHHHHHHHhc
Q 001727 381 SMELTGCVPISSELSIMSV-DNASDDGMSSSGSWANALISELEHFRDGKIKNQLEHKGIEVSGMSLMDDFVEIEKLAIVS 459 (1020)
Q Consensus 381 ~~e~~~~~~~s~~~sl~S~-d~~~dd~~s~s~SWAsaLisEld~fk~~K~~~~~~~~s~~~sdi~LMDDFlEMEKLA~~s 459 (1020)
++|+++|+|++||+|++|| |+|+||++||+|||||||||||||||++|.++++++++++++||+|||||||||||||+|
T Consensus 316 ~~e~~~s~~~~~~~s~~s~se~~~dd~~s~s~SWAsaLiseldqfk~~k~~~~~~~~~~~~~~i~LMDDFlEmEkLA~~s 395 (769)
T PF05911_consen 316 SMELSSSQNTSNPPSLTSMSEDGNDDEGSCSDSWASALISELDQFKNEKVISRSSSKTISSSDIDLMDDFLEMEKLAALS 395 (769)
T ss_pred ccccccccCCCCCCchhcccccCCCCCCcccchhHHHHhchHHHhccccccccccccCCccccHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999 999999999999999999999999999999998888999889999999999999999999
Q ss_pred cCCCCCCCCCcc-cccCccccccccccchhhhhhhhccc-ccccccchhHHHHHHHHHHhhhhhccccHHHHHHHHHHHh
Q 001727 460 AETPSGSGYQSD-VTSKELVPLVRSDSRLSEIKQEIHSK-DVATEKSFDWLQVVLNAMLKQRQISKQSLDKLLEDIRIAL 537 (1020)
Q Consensus 460 ~~~~~~~g~~s~-~~g~elv~v~~~~s~~~~~~~e~~s~-d~~s~~~~~wLq~~l~~v~~~~~~~~~~~~~ILe~Ir~AL 537 (1020)
++++.++++++. +.+...+.+..+. +.+.... ++..+++|+|||++++.|+++|++++++ .||++|+.|+
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~wLqsv~k~v~~q~~~s~i~--~ILedI~~al 467 (769)
T PF05911_consen 396 RDSSSPSSCSSSEVDSDSSVTLESSS------KRESVLESDKLSDRIPEWLQSVLKLVLEQKEVSKIS--EILEDIEIAL 467 (769)
T ss_pred CCCCCCCCCCCccccccccccccccc------cccccccchhhcccccHHHHHHHHHHHHHHHhhhHH--HHHHHHHHHH
Confidence 987744444331 2222222222111 1122222 4678999999999999999999999999 9999999999
Q ss_pred cccCCCccccccccccccCCCCCCCCCccccccCCCCCccCCccccchhhhhhhHHHHHHHHHHHhhccccccCCCCCce
Q 001727 538 GYVNYPTVVAADSVAASTQPRESKSPNTSYIAHSLPGDCRNGKERSSQHLESDLSKSICKIIELIEGVNVTSSVSHPYSV 617 (1020)
Q Consensus 538 ~~i~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dls~si~kI~~lie~~~~~~~~~~~~~v 617 (1020)
++++++..+..+.. .|. .....+++.+..+.....+.
T Consensus 468 ~~~~~~~~~~~~~~--------------~~~---------------------------~~~~sL~e~~~s~~~~s~eL-- 504 (769)
T PF05911_consen 468 DSINNSSNCDDDSE--------------EYE---------------------------SMEASLVEESKSMIEISQEL-- 504 (769)
T ss_pred Hhhccccccccccc--------------hhh---------------------------hhhhhHHHHHHHHHhhcccH--
Confidence 99988855444322 110 01111222222221111111
Q ss_pred eecccCchhHHHHHHHHHHHhhhhcCCcccHHHHHHHHHHHHHHHHhhhccccchhhhHHHHhhhcCCcccccccccccc
Q 001727 618 HVFQWNPSELHAVLQKFVCACNDLLGGKADLDKFAEELSSALDWIMNNCIAHKDASRARNKVKKHFGLLVESNEVHIPEE 697 (1020)
Q Consensus 618 ~~fq~k~sEL~~~Le~f~~~C~dvL~gka~le~f~~EL~~~L~wi~n~~~s~~d~s~~~d~i~k~f~~~~~~dkv~l~e~ 697 (1020)
.++.++.++|..+|++|+|+|+||++|++++++|+.|+|.+|+||+++||+++|+..+++.|+.+|.|..+...-.-..
T Consensus 505 ~~avskIsEfv~~LekeVh~C~DLLsgkadLE~fieE~s~tLdwIls~~~SLqDv~s~~sEIK~~f~~~ss~e~E~~~~- 583 (769)
T PF05911_consen 505 NVAVSKISEFVLVLEKEVHVCQDLLSGKADLERFIEEFSLTLDWILSNCFSLQDVSSMRSEIKKNFDGDSSSEAEINSE- 583 (769)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHhhhhcccccccccch-
Confidence 1223444888999999999999999999999999999999999999999999999999999999999986531111000
Q ss_pred cccccccCcccccccccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhh
Q 001727 698 QSSASLQGQNVLSQSNLQEENRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMIEDQMENQ 777 (1020)
Q Consensus 698 k~~c~~~~~~~~~q~~~~eE~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~ 777 (1020)
+..+........++++.|+.++.+|++.|++|++++|.++.||+|+|+.|.+|+++|.++++|++++|+||+||
T Consensus 584 ------dea~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~ 657 (769)
T PF05911_consen 584 ------DEADTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAM 657 (769)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00111134567899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCccccccchhhhHH
Q 001727 778 KSINEDLDTQLTVAKAKLNEGFQKFSSLEVELEYRNNFCEELEATCLELQLQLESVAKREPPSYGVNQGEKQSQNGWEMT 857 (1020)
Q Consensus 778 ~~~~~~Let~L~~~e~E~~el~~Ki~sLE~ELe~e~~~~eEl~AkC~ELqeQLer~~~~~~~~~~~~~e~~~~k~e~EIa 857 (1020)
+.+|+++++++..+++|++.++.||++||+||+++|++|+|+++||++||+||+|++.+...... .+++++++||||||
T Consensus 658 ~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~~~~~-~~~~~k~kqe~Eia 736 (769)
T PF05911_consen 658 KESYESLETRLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMKKEESLQQL-ANEDKKIKQEKEIA 736 (769)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcccchhhc-cccccccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999986655444 49999999999999
Q ss_pred HHhhhHHHHHHHHHHHHHHHhhccCCccccccc
Q 001727 858 AASIKLAECQETILNLGKQLKALASPREAVLFD 890 (1020)
Q Consensus 858 aAAeKLAECQETI~nLGKQLKALa~p~e~~lfD 890 (1020)
+||+|||||||||+|||||||||+||. ++++|
T Consensus 737 aAA~KLAECQeTI~sLGkQLksLa~~~-d~~~d 768 (769)
T PF05911_consen 737 AAAEKLAECQETIASLGKQLKSLATPE-DFLLD 768 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCChh-hhhcc
Confidence 999999999999999999999999877 44554
No 2
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.41 E-value=0.011 Score=74.32 Aligned_cols=21 Identities=19% Similarity=0.401 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHhhccCC
Q 001727 863 LAECQETILNLGKQLKALASP 883 (1020)
Q Consensus 863 LAECQETI~nLGKQLKALa~p 883 (1020)
++++++.|.-|-++|+.+.+.
T Consensus 953 ~~~l~~~l~~l~~~i~~l~~v 973 (1164)
T TIGR02169 953 LEDVQAELQRVEEEIRALEPV 973 (1164)
T ss_pred HHHHHHHHHHHHHHHHHcCCC
Confidence 457777777777788777663
No 3
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.27 E-value=0.035 Score=71.58 Aligned_cols=54 Identities=19% Similarity=0.244 Sum_probs=30.6
Q ss_pred hhhhHHHHHHHHHhhcCcchHHHHHHHHHHHhhhccCcchhhHHHHHHHHhhhh
Q 001727 48 SMKNLNEQLASVIFDCHPKDELMAKQAKLVQEAGAGQEKPEVAAAVVKKELDET 101 (1020)
Q Consensus 48 ~~k~LnekLs~al~~~~~Kd~lvkqhaKvaeEAv~GwEKae~E~~~lK~qLe~~ 101 (1020)
.++.++.+|..+-.++......+..+..--.++-..++..+.+...++.+++..
T Consensus 233 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~ 286 (1163)
T COG1196 233 KLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEEL 286 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555555555555555555555554
No 4
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.86 E-value=0.19 Score=63.05 Aligned_cols=17 Identities=18% Similarity=0.241 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHhhccC
Q 001727 866 CQETILNLGKQLKALAS 882 (1020)
Q Consensus 866 CQETI~nLGKQLKALa~ 882 (1020)
.++.|..|..+++.|.+
T Consensus 963 ~~~~~~~l~~~i~~lg~ 979 (1179)
T TIGR02168 963 IEDDEEEARRRLKRLEN 979 (1179)
T ss_pred cccCHHHHHHHHHHHHH
Confidence 45567777777777765
No 5
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.47 E-value=0.67 Score=58.68 Aligned_cols=47 Identities=13% Similarity=0.106 Sum_probs=22.6
Q ss_pred HHHHHHhhHHhHHHHHHHHhhhhhhhhHHHhhhhhhhhhhhHHHHHH
Q 001727 326 LLARLHDMEKENRTLKDIVITKSTELQASRMMFSRTASRLSYVESQL 372 (1020)
Q Consensus 326 lt~rL~~~EeEnk~LKe~Lakkn~ELQ~sr~m~a~taskLs~le~ql 372 (1020)
+..++..++.+.+.+...+.....+|+..+..+.....++..++...
T Consensus 453 l~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~l~~l~~~~~~l~~~~ 499 (1164)
T TIGR02169 453 QEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQA 499 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555555555555555544444444444444443
No 6
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.86 E-value=2.9 Score=54.63 Aligned_cols=85 Identities=29% Similarity=0.328 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhHHHHHHH
Q 001727 744 TQLHESEEQIGNLETEVKALKESKEMIEDQMENQKSINEDLDTQLTVAKAKLNEGFQKFSSLEVELEYRNNFCEELEATC 823 (1020)
Q Consensus 744 ~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~~~Let~L~~~e~E~~el~~Ki~sLE~ELe~e~~~~eEl~AkC 823 (1020)
.++...+.....+..++..++.....++.++.+...-...++..+..+..++..+...+..|+.+|..-+.--.++....
T Consensus 814 ~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l 893 (1163)
T COG1196 814 RELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEEL 893 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444333333444444433333334444444444444444444444444444333333333333
Q ss_pred HHHHH
Q 001727 824 LELQL 828 (1020)
Q Consensus 824 ~ELqe 828 (1020)
++++.
T Consensus 894 ~~~~~ 898 (1163)
T COG1196 894 RELES 898 (1163)
T ss_pred HHHHH
Confidence 33333
No 7
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=96.80 E-value=0.03 Score=69.35 Aligned_cols=207 Identities=21% Similarity=0.260 Sum_probs=119.1
Q ss_pred hhhhhhhHHHHHHHHHHHhhccccccCCCCCceeecccCchhHHHHHHHHHHHhhhhcCCcccHHH---HHHHHHHHHHH
Q 001727 585 QHLESDLSKSICKIIELIEGVNVTSSVSHPYSVHVFQWNPSELHAVLQKFVCACNDLLGGKADLDK---FAEELSSALDW 661 (1020)
Q Consensus 585 ~~~~~dls~si~kI~~lie~~~~~~~~~~~~~v~~fq~k~sEL~~~Le~f~~~C~dvL~gka~le~---f~~EL~~~L~w 661 (1020)
..+++++..++.+|++|+..+...+...+|..- ...+|..+++.|..+...++++...+.+ -..++..-+.|
T Consensus 498 ~~~s~eL~~avskIsEfv~~LekeVh~C~DLLs-----gkadLE~fieE~s~tLdwIls~~~SLqDv~s~~sEIK~~f~~ 572 (769)
T PF05911_consen 498 IEISQELNVAVSKISEFVLVLEKEVHVCQDLLS-----GKADLERFIEEFSLTLDWILSNCFSLQDVSSMRSEIKKNFDG 572 (769)
T ss_pred HhhcccHHHHHHhHHHHHHHHHHHHHHHHHHhc-----chhHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHhhhh
Confidence 346789999999999999999555444444322 5677999999999999999999999988 34444444444
Q ss_pred HHhhhccccchhhhHHHHhhhcCCcccccccccccccccccccCccccc-ccccHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 001727 662 IMNNCIAHKDASRARNKVKKHFGLLVESNEVHIPEEQSSASLQGQNVLS-QSNLQEENRRLRDELKSMAARLESATDRSE 740 (1020)
Q Consensus 662 i~n~~~s~~d~s~~~d~i~k~f~~~~~~dkv~l~e~k~~c~~~~~~~~~-q~~~~eE~e~Lk~ek~~le~~L~~~~~~~E 740 (1020)
-..+-....... .-.....+... +++ ..+.. -.....++....+.++.+...|+.....++
T Consensus 573 ~ss~e~E~~~~d--ea~~~~~~el~----------eel------E~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~ 634 (769)
T PF05911_consen 573 DSSSEAEINSED--EADTSEKKELE----------EEL------EKLESEKEELEMELASCQDQLESLKNQLKESEQKLE 634 (769)
T ss_pred cccccccccchH--HHHHHHHHHHH----------HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333321111000 00000000000 000 00000 000111222233344555555666666666
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhh-------hhhhhhHhHHHHHHHHHHHHhhhhhhhhHHHHHHhh
Q 001727 741 ALVTQLHESEEQIGNLETEVKALKESKEMIEDQMENQ-------KSINEDLDTQLTVAKAKLNEGFQKFSSLEVELEYRN 813 (1020)
Q Consensus 741 ~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~-------~~~~~~Let~L~~~e~E~~el~~Ki~sLE~ELe~e~ 813 (1020)
.++.+|.-+.+.=.-+..+|...++++..++++++.- ...-..|+.++..-.+-..++..|-..||.+|+.-.
T Consensus 635 eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~ 714 (769)
T PF05911_consen 635 ELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMK 714 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhh
Confidence 6777777666666667777777777777777665522 233355666666656666677777778888877654
Q ss_pred h
Q 001727 814 N 814 (1020)
Q Consensus 814 ~ 814 (1020)
.
T Consensus 715 ~ 715 (769)
T PF05911_consen 715 K 715 (769)
T ss_pred c
Confidence 3
No 8
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=96.75 E-value=1.2 Score=59.68 Aligned_cols=104 Identities=24% Similarity=0.346 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHhhhhHhhHHHHHHhhhhhhHhhhhhhhhHHHHHHHHHhhhhh
Q 001727 157 LEKNLREANERIAKLAAENSHLSKALLVKEKMIEDLSKRKSQAEAEFSTLMTRLDVTEKENAFLKYEFRILEKELEIRNE 236 (1020)
Q Consensus 157 lE~kl~e~~~~l~~~~aEn~~Ls~al~~k~~~i~el~~~k~~ae~e~~~l~~rLe~~eKen~sLkyE~~~l~kELeiR~~ 236 (1020)
|..+|....-++....+.+..++.+|. .+..++.+-+..+++.++.+...+-++|.+.+.|+-++-.+..+++.
T Consensus 917 l~~~L~~a~s~i~~yqe~~~s~eqsl~---~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~--- 990 (1822)
T KOG4674|consen 917 LKEELTDALSQIREYQEEYSSLEQSLE---SVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELEL--- 990 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 445566666666677777777777774 45555555566666666666666666666666666655555555521
Q ss_pred hhhhhhhhHHHhhhhhhhhhHHHHhHHHHHHHHHHHh
Q 001727 237 EMEYTRRSVEATHKQHLESVKKVAKLEAECERLRLLV 273 (1020)
Q Consensus 237 Ere~~~~sae~a~KQhlEsvKKiakLEaECqRLR~lv 273 (1020)
++.--.++-+.-++.|..|-.|...++.+.
T Consensus 991 -------~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~ 1020 (1822)
T KOG4674|consen 991 -------STKGKEDKLLDLSREISSLQNELKSLLKAA 1020 (1822)
T ss_pred -------cccchhhhHHHHHHHhHHHHHHHHHHHHHH
Confidence 222222344455566666666666665543
No 9
>PRK09039 hypothetical protein; Validated
Probab=96.75 E-value=0.026 Score=64.01 Aligned_cols=145 Identities=14% Similarity=0.161 Sum_probs=114.3
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhhhhHhHHHH
Q 001727 710 SQSNLQEENRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMIEDQMENQKSINEDLDTQLT 789 (1020)
Q Consensus 710 ~q~~~~eE~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~~~Let~L~ 789 (1020)
+|++..+++..++.++..|+..+..-.+.+..-+.+...++..|..++.++..++.....++.++..-
T Consensus 40 ~q~fLs~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~------------ 107 (343)
T PRK09039 40 AQFFLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAEL------------ 107 (343)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------------
Confidence 69999999999999999999999888887877788999999999999999999999998888765521
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCccccccchhhhHHHHhhhHHHHHHH
Q 001727 790 VAKAKLNEGFQKFSSLEVELEYRNNFCEELEATCLELQLQLESVAKREPPSYGVNQGEKQSQNGWEMTAASIKLAECQET 869 (1020)
Q Consensus 790 ~~e~E~~el~~Ki~sLE~ELe~e~~~~eEl~AkC~ELqeQLer~~~~~~~~~~~~~e~~~~k~e~EIaaAAeKLAECQET 869 (1020)
.....++..+...|+.+|..+++.+.|.-..-.-|+.|++.... ..-.-+.+|+++=.+.++=|..
T Consensus 108 --~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~------------Qla~le~~L~~ae~~~~~~~~~ 173 (343)
T PRK09039 108 --AGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRR------------QLAALEAALDASEKRDRESQAK 173 (343)
T ss_pred --hhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 11122333444455677777778888888888888888887664 2444567788888888888888
Q ss_pred HHHHHHHHhhc
Q 001727 870 ILNLGKQLKAL 880 (1020)
Q Consensus 870 I~nLGKQLKAL 880 (1020)
|..|+..|...
T Consensus 174 i~~L~~~L~~a 184 (343)
T PRK09039 174 IADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHH
Confidence 88888888765
No 10
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.67 E-value=5.1 Score=54.77 Aligned_cols=46 Identities=20% Similarity=0.234 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHH
Q 001727 717 ENRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKA 762 (1020)
Q Consensus 717 E~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~ 762 (1020)
..+.+.+.++.+..+++.+++.++.........|+....|+.++..
T Consensus 1373 ~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d 1418 (1930)
T KOG0161|consen 1373 RLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELED 1418 (1930)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3567777888888888888888888888777887777777777764
No 11
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.27 E-value=5.4 Score=50.53 Aligned_cols=48 Identities=23% Similarity=0.288 Sum_probs=22.7
Q ss_pred HHHHHHhhHHhHHHHHHHHhhhhhhhhHHHhhhhhhhhhhhHHHHHHH
Q 001727 326 LLARLHDMEKENRTLKDIVITKSTELQASRMMFSRTASRLSYVESQLR 373 (1020)
Q Consensus 326 lt~rL~~~EeEnk~LKe~Lakkn~ELQ~sr~m~a~taskLs~le~ql~ 373 (1020)
+..++..++.+...+...+.....++...+.-+...-+++..++.++.
T Consensus 438 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~ 485 (1179)
T TIGR02168 438 LQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELA 485 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444544443
No 12
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.59 E-value=0.27 Score=52.93 Aligned_cols=148 Identities=26% Similarity=0.320 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHHHhhh
Q 001727 721 LRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMIEDQMENQKSINEDLDTQLTVAKAKLNEGFQ 800 (1020)
Q Consensus 721 Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~~~Let~L~~~e~E~~el~~ 800 (1020)
|.-.+..|+..|..+.+.+.....+|.++++...+...-+..+.......++.|...-.--......+..+.....+...
T Consensus 41 l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~r 120 (237)
T PF00261_consen 41 LQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVER 120 (237)
T ss_dssp HHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333334444433333333333333333333333333222223333444445666777788
Q ss_pred hhhhhHHHHHHhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCccccccchhhhHHH--HhhhHHHHHHHHHHHHHHHh
Q 001727 801 KFSSLEVELEYRNNFCEELEATCLELQLQLESVAKREPPSYGVNQGEKQSQNGWEMTA--ASIKLAECQETILNLGKQLK 878 (1020)
Q Consensus 801 Ki~sLE~ELe~e~~~~eEl~AkC~ELqeQLer~~~~~~~~~~~~~e~~~~k~e~EIaa--AAeKLAECQETI~nLGKQLK 878 (1020)
|+..+|.+|+.=-.....++.+|.+|+.+|..+.+ .++ ..|++- |+.+...=.+.|..|-.+|+
T Consensus 121 kl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~-------------~lk-~lE~~~~~~~~re~~~e~~i~~L~~~lk 186 (237)
T PF00261_consen 121 KLKVLEQELERAEERAEAAESKIKELEEELKSVGN-------------NLK-SLEASEEKASEREDEYEEKIRDLEEKLK 186 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHH-------------HHH-HhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 88889999988777788889999999999998763 333 344443 56777788888988988888
Q ss_pred hccC
Q 001727 879 ALAS 882 (1020)
Q Consensus 879 ALa~ 882 (1020)
..-.
T Consensus 187 eaE~ 190 (237)
T PF00261_consen 187 EAEN 190 (237)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6643
No 13
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.38 E-value=0.96 Score=56.15 Aligned_cols=146 Identities=19% Similarity=0.206 Sum_probs=95.3
Q ss_pred chhhHHHHHHHHhhhhcCCCCcccCCCCCCCCC-CChhHHHHHhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 001727 86 KPEVAAAVVKKELDETLKPPLSANENLPYAGAA-TAPMKCVKQLNFDQAEQEQRVHDAVVKTSGEFEKAQKELEKNLREA 164 (1020)
Q Consensus 86 Kae~E~~~lK~qLe~~~~~~~~~e~rv~hld~A-~~LKeCmrQLr~~rEEqEq~i~eav~~~s~e~ek~k~elE~kl~e~ 164 (1020)
+-|+|+..||..|-..-+..-.+..+++.|+.. ..||.|+.|||.--|+-+-|+|..+..+-++-..+. .||.+|.+-
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~-~LEkrL~eE 500 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQ-QLEKRLAEE 500 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 789999999999988888877777787766554 339999999999999999999999997666666665 688888776
Q ss_pred HHHHHHHHhhhHHhHHHHHHHHHHHHHHHHhhhh--H---hhHH-HHHHhhhhhhHhhhhhhhhHHHHHHHHHhhhhhhh
Q 001727 165 NERIAKLAAENSHLSKALLVKEKMIEDLSKRKSQ--A---EAEF-STLMTRLDVTEKENAFLKYEFRILEKELEIRNEEM 238 (1020)
Q Consensus 165 ~~~l~~~~aEn~~Ls~al~~k~~~i~el~~~k~~--a---e~e~-~~l~~rLe~~eKen~sLkyE~~~l~kELeiR~~Er 238 (1020)
...-+.+.+.=.+.- |.+.-++-.-.++- + ..+- +.+..|...+|.|+.-|+.|++..++. +|.-|.
T Consensus 501 ~~~R~~lEkQL~eEr-----k~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~--~~~~e~ 573 (697)
T PF09726_consen 501 RRQRASLEKQLQEER-----KARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQ--IRELES 573 (697)
T ss_pred HHHHHHHHHHHHHHH-----HHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 554333333211111 11111111111110 0 0011 357788888888888888888765554 344443
Q ss_pred h
Q 001727 239 E 239 (1020)
Q Consensus 239 e 239 (1020)
+
T Consensus 574 ~ 574 (697)
T PF09726_consen 574 E 574 (697)
T ss_pred H
Confidence 3
No 14
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.25 E-value=0.75 Score=49.63 Aligned_cols=146 Identities=22% Similarity=0.343 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhhhhHhHHHHHH------
Q 001727 718 NRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMIEDQMENQKSINEDLDTQLTVA------ 791 (1020)
Q Consensus 718 ~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~~~Let~L~~~------ 791 (1020)
+..|+.+++..+.++..+...++.....+...|..+.+|+..+.. +|+.|+....-......+|..+
T Consensus 3 ~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~-------lE~~le~~eerL~~~~~kL~~~e~~~de 75 (237)
T PF00261_consen 3 IQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQL-------LEEELERAEERLEEATEKLEEAEKRADE 75 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHCCCHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 556777777777777666666665555555566555555555554 5555444443333333444444
Q ss_pred --------HHHHHHhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCccccccchhhhHHHHhhhH
Q 001727 792 --------KAKLNEGFQKFSSLEVELEYRNNFCEELEATCLELQLQLESVAKREPPSYGVNQGEKQSQNGWEMTAASIKL 863 (1020)
Q Consensus 792 --------e~E~~el~~Ki~sLE~ELe~e~~~~eEl~AkC~ELqeQLer~~~~~~~~~~~~~e~~~~k~e~EIaaAAeKL 863 (1020)
+......-.+|..||..|..=+...++...+|.+..-+|.-... ..-..+.=+..+-.|+
T Consensus 76 ~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~------------~Le~aEeR~e~~E~ki 143 (237)
T PF00261_consen 76 SERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQ------------ELERAEERAEAAESKI 143 (237)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHhhhchhH
Confidence 44444455667777777777777777777777766665554331 1112233345566778
Q ss_pred HHHHHHHHHHHHHHhhccC
Q 001727 864 AECQETILNLGKQLKALAS 882 (1020)
Q Consensus 864 AECQETI~nLGKQLKALa~ 882 (1020)
.+=++.|..+|..||+|.-
T Consensus 144 ~eLE~el~~~~~~lk~lE~ 162 (237)
T PF00261_consen 144 KELEEELKSVGNNLKSLEA 162 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 8888888888888888754
No 15
>PRK02224 chromosome segregation protein; Provisional
Probab=94.73 E-value=17 Score=45.91 Aligned_cols=48 Identities=17% Similarity=0.293 Sum_probs=27.1
Q ss_pred HHHHHHhhHHhHHHHHHHHhhhhhhhhHHHhhhhhhhhhhhHHHHHHH
Q 001727 326 LLARLHDMEKENRTLKDIVITKSTELQASRMMFSRTASRLSYVESQLR 373 (1020)
Q Consensus 326 lt~rL~~~EeEnk~LKe~Lakkn~ELQ~sr~m~a~taskLs~le~ql~ 373 (1020)
+...+..++++.+.|.+-++....++...+......-..|..++.++.
T Consensus 347 ~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~ 394 (880)
T PRK02224 347 LREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIE 394 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666655555555555544444444445555444
No 16
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=94.28 E-value=8.1 Score=47.06 Aligned_cols=279 Identities=19% Similarity=0.245 Sum_probs=143.2
Q ss_pred hhhhhhHHHHHHHHHhhcCcchHHHHHHHH------HHHhhhccC-----cchhhHHHHHHHHhhhhcCCCCcccCCCCC
Q 001727 46 ERSMKNLNEQLASVIFDCHPKDELMAKQAK------LVQEAGAGQ-----EKPEVAAAVVKKELDETLKPPLSANENLPY 114 (1020)
Q Consensus 46 ~~~~k~LnekLs~al~~~~~Kd~lvkqhaK------vaeEAv~Gw-----EKae~E~~~lK~qLe~~~~~~~~~e~rv~h 114 (1020)
.+.+..||++|+.-+--+. -|=.||.+ +.+.++.|= ..=|+|...++.-|+++......++.-+.-
T Consensus 41 K~El~~LNDRLA~YIekVR---~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~k 117 (546)
T KOG0977|consen 41 KKELQELNDRLAVYIEKVR---FLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITK 117 (546)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568899999987765553 23334433 334444322 244788888888888887766655554332
Q ss_pred CCCCCChhHHHHHhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHH
Q 001727 115 AGAATAPMKCVKQLNFDQAEQEQRVHDAVVKTSGEFEKAQKELEKNLREANERIAKLAAENSHLSKALLVKEKMIEDLSK 194 (1020)
Q Consensus 115 ld~A~~LKeCmrQLr~~rEEqEq~i~eav~~~s~e~ek~k~elE~kl~e~~~~l~~~~aEn~~Ls~al~~k~~~i~el~~ 194 (1020)
|++=+..||.-=++.++ -..++-++..+|...=..+|+++.=+..+...+..|...|- .+=+++..+|..
T Consensus 118 ------l~~e~~elr~~~~~~~k-~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk---~en~rl~~~l~~ 187 (546)
T KOG0977|consen 118 ------LREELKELRKKLEKAEK-ERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLK---AENSRLREELAR 187 (546)
T ss_pred ------hHHHHHHHHHHHHHHHH-HHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH---HHhhhhHHHHHH
Confidence 33333334433333332 23334455566666666677666655554444443333222 223455666667
Q ss_pred hhhhHhhHH---HHHHhhhhhhHhhhhhhhh----HHHHHHHHHhhhhhhhhhhh-----------hhHHHhhhhhhhhh
Q 001727 195 RKSQAEAEF---STLMTRLDVTEKENAFLKY----EFRILEKELEIRNEEMEYTR-----------RSVEATHKQHLESV 256 (1020)
Q Consensus 195 ~k~~ae~e~---~~l~~rLe~~eKen~sLky----E~~~l~kELeiR~~Ere~~~-----------~sae~a~KQhlEsv 256 (1020)
.+.+.+.+. .+++.+.+.+..++.+++- ||.-. +|-..|+++- .|..--.-||= .+
T Consensus 188 ~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~-----~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye-~~ 261 (546)
T KOG0977|consen 188 ARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEE-----RRKARRDTTADNREYFKNELALAIREIRAQYE-AI 261 (546)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHH-----HHHHhhcccccchHHHHHHHHHHHHHHHHHHH-HH
Confidence 777666666 5677777777777777762 22221 2222333320 01111111111 11
Q ss_pred HHHHh------HHHHHHHHHHHhhhcCCCchHHHhhHHHHHhhccchhhhhcccCCCCcccccccccCCCcch-hh-HHH
Q 001727 257 KKVAK------LEAECERLRLLVRKKLPGSAASAKMKSEVEMQGRDQMDMRRRKLSPTRDLIVRHATTESSHD-IS-LLA 328 (1020)
Q Consensus 257 KKiak------LEaECqRLR~lvRKklPgpAala~Mk~Eve~lg~d~~e~rrr~~~~~~~~~~~~~~~~~~~~-~~-lt~ 328 (1020)
-+.++ .....+++|.-. -|+.....+-+.||...-....+.|.+ +..... +. |..
T Consensus 262 ~~~nR~diE~~Y~~kI~~i~~~~---~~~~~~~~~~rEEl~~~R~~i~~Lr~k--------------lselE~~n~~L~~ 324 (546)
T KOG0977|consen 262 SRQNRKDIESWYKRKIQEIRTSA---ERANVEQNYAREELRRIRSRISGLRAK--------------LSELESRNSALEK 324 (546)
T ss_pred HHHhHHHHHHHHHHHHHHHHhhh---ccccchhHHHHHHHHHHHhcccchhhh--------------hccccccChhHHH
Confidence 11111 233344444211 133333444455554422221222211 111111 22 666
Q ss_pred HHHhh----HHhHHHHHHHHhhhhhhhhHHHhhhhh
Q 001727 329 RLHDM----EKENRTLKDIVITKSTELQASRMMFSR 360 (1020)
Q Consensus 329 rL~~~----EeEnk~LKe~Lakkn~ELQ~sr~m~a~ 360 (1020)
++..+ +++++..-+.|+.|.+++...|--|..
T Consensus 325 ~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~ 360 (546)
T KOG0977|consen 325 RIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQ 360 (546)
T ss_pred HHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 66554 478999999999999999999988876
No 17
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.11 E-value=5.9 Score=48.19 Aligned_cols=80 Identities=28% Similarity=0.373 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHhhhhHhhHHHHHHhhh--------------hhhHhhhhh
Q 001727 154 QKELEKNLREANERIAKLAAENSHLSKALLVKEKMIEDLSKRKSQAEAEFSTLMTRL--------------DVTEKENAF 219 (1020)
Q Consensus 154 k~elE~kl~e~~~~l~~~~aEn~~Ls~al~~k~~~i~el~~~k~~ae~e~~~l~~rL--------------e~~eKen~s 219 (1020)
+..|..++.++..++..+..+...|..-..+.+++...+++....-+..-..|+.|| ...+.++..
T Consensus 208 ~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~~e~e~ 287 (546)
T PF07888_consen 208 RESLKEQLAEARQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLEAELKQRLKETVVQLKQEETQAQQLQQENEA 287 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 334555666666666666766666666666666666666554433333222233333 345556666
Q ss_pred hhhHHHHHHHHHhh
Q 001727 220 LKYEFRILEKELEI 233 (1020)
Q Consensus 220 LkyE~~~l~kELei 233 (1020)
||.+++.++.-|+.
T Consensus 288 LkeqLr~~qe~lqa 301 (546)
T PF07888_consen 288 LKEQLRSAQEQLQA 301 (546)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666665553
No 18
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=93.98 E-value=0.35 Score=59.66 Aligned_cols=126 Identities=29% Similarity=0.390 Sum_probs=77.0
Q ss_pred HhhHHHHHHhhhhhhHhhhhhhhhHHHHHHHHHhhhhhhhhhh--------hhhHHHhhhhhhhhhHHHHhHHHHHHHHH
Q 001727 199 AEAEFSTLMTRLDVTEKENAFLKYEFRILEKELEIRNEEMEYT--------RRSVEATHKQHLESVKKVAKLEAECERLR 270 (1020)
Q Consensus 199 ae~e~~~l~~rLe~~eKen~sLkyE~~~l~kELeiR~~Ere~~--------~~sae~a~KQhlEsvKKiakLEaECqRLR 270 (1020)
....+..|+.++..+++++..|+-++.+|..+|+-++.=-+|+ .+.==++.-++. --.-+..|-+||.+|+
T Consensus 501 ~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~-k~~~l~~L~~En~~L~ 579 (722)
T PF05557_consen 501 LSEELNELQKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQI-KKSTLEALQAENEDLL 579 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 3445667889999999999999999999999887533111221 121112222222 2367889999999999
Q ss_pred HHhhhcCCCchHHHhhHHHHHhhccchhhhhcccCCCCcccccccccCCC-cchhh-HHHHHHhhHHhHHHHHHHHhhhh
Q 001727 271 LLVRKKLPGSAASAKMKSEVEMQGRDQMDMRRRKLSPTRDLIVRHATTES-SHDIS-LLARLHDMEKENRTLKDIVITKS 348 (1020)
Q Consensus 271 ~lvRKklPgpAala~Mk~Eve~lg~d~~e~rrr~~~~~~~~~~~~~~~~~-~~~~~-lt~rL~~~EeEnk~LKe~Lakkn 348 (1020)
..++.--.|.. . + .+.++.+. +.. ..+.. |-.++...+--+..||++.++|-
T Consensus 580 ~~l~~le~~~~--------------~----------~-~~~~p~~~-~~~~~~e~~~l~~~~~~~ekr~~RLkevf~~ks 633 (722)
T PF05557_consen 580 ARLRSLEEGNS--------------Q----------P-VDAVPTSS-LESQEKEIAELKAELASAEKRNQRLKEVFKAKS 633 (722)
T ss_dssp HHHHHHTTTT------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccCCC--------------C----------C-cccccchh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99976322210 0 0 00111111 111 12344 88888889999999999999998
Q ss_pred hhh
Q 001727 349 TEL 351 (1020)
Q Consensus 349 ~EL 351 (1020)
.|.
T Consensus 634 ~eF 636 (722)
T PF05557_consen 634 QEF 636 (722)
T ss_dssp HHH
T ss_pred HHH
Confidence 887
No 19
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=93.67 E-value=0.9 Score=56.32 Aligned_cols=92 Identities=30% Similarity=0.348 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHH-----------HHHhhhhHhhHHHHHHhhhhhhHhhh
Q 001727 149 EFEKAQKELEKNLREANERIAKLAAENSHLSKALLVKEKMIED-----------LSKRKSQAEAEFSTLMTRLDVTEKEN 217 (1020)
Q Consensus 149 e~ek~k~elE~kl~e~~~~l~~~~aEn~~Ls~al~~k~~~i~e-----------l~~~k~~ae~e~~~l~~rLe~~eKen 217 (1020)
|.-+-+.-|+.+-+|+-+-+...+.||..|.+.+++|+.-+.+ |+-+..+|-+.++.++-+|+..||||
T Consensus 445 es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN 524 (861)
T PF15254_consen 445 ESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKEN 524 (861)
T ss_pred HHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhh
Confidence 3334444555666777777778889999999999999987654 33345566777888999999999999
Q ss_pred hhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhhhhhhhhhHHHHhHHHHHHHHHHHhhh
Q 001727 218 AFLKYEFRILEKELEIRNEEMEYTRRSVEATHKQHLESVKKVAKLEAECERLRLLVRK 275 (1020)
Q Consensus 218 ~sLkyE~~~l~kELeiR~~Ere~~~~sae~a~KQhlEsvKKiakLEaECqRLR~lvRK 275 (1020)
.-|...|+.. +||..|||-|.|-
T Consensus 525 ~iL~itlrQr-----------------------------------DaEi~RL~eLtR~ 547 (861)
T PF15254_consen 525 QILGITLRQR-----------------------------------DAEIERLRELTRT 547 (861)
T ss_pred hHhhhHHHHH-----------------------------------HHHHHHHHHHHHH
Confidence 9998877643 5788899999875
No 20
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=93.55 E-value=44 Score=46.41 Aligned_cols=42 Identities=21% Similarity=0.151 Sum_probs=24.5
Q ss_pred ccCchhHHHHHHHHHHHhhhhcCCcccHHHHHHHHHHHHHHH
Q 001727 621 QWNPSELHAVLQKFVCACNDLLGGKADLDKFAEELSSALDWI 662 (1020)
Q Consensus 621 q~k~sEL~~~Le~f~~~C~dvL~gka~le~f~~EL~~~L~wi 662 (1020)
+.+.+++...++.....|.++..-+..|...+..+...++-.
T Consensus 1385 ~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~ 1426 (1930)
T KOG0161|consen 1385 QQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERS 1426 (1930)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344556666667666777777666666555554444444433
No 21
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=93.37 E-value=8.8 Score=46.60 Aligned_cols=135 Identities=21% Similarity=0.290 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHH--H-HHHHHHHHHHhhhhHhhHHHHHHhhhhhhHhhhhhhhhHHHHHH
Q 001727 152 KAQKELEKNLREANERIAKLAAENSHLSKALL--V-KEKMIEDLSKRKSQAEAEFSTLMTRLDVTEKENAFLKYEFRILE 228 (1020)
Q Consensus 152 k~k~elE~kl~e~~~~l~~~~aEn~~Ls~al~--~-k~~~i~el~~~k~~ae~e~~~l~~rLe~~eKen~sLkyE~~~l~ 228 (1020)
+-...+...|..+......+..|-..|+.+-. + --..+..+.++....+..+..+..++.......+.++-++.-+.
T Consensus 310 k~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~ 389 (569)
T PRK04778 310 KNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEIL 389 (569)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 33334444444444444444444444443311 0 01124455555556666666666666666677777777888888
Q ss_pred HHHhhhhhhhhhhhhhHHHhhhhhhhhhHHHHhHHHHHHHHHHHhhhc-CCC-chHHHhh
Q 001727 229 KELEIRNEEMEYTRRSVEATHKQHLESVKKVAKLEAECERLRLLVRKK-LPG-SAASAKM 286 (1020)
Q Consensus 229 kELeiR~~Ere~~~~sae~a~KQhlEsvKKiakLEaECqRLR~lvRKk-lPg-pAala~M 286 (1020)
++|+.-..++.-=........+.-.+.-+++.++......++.+++++ ||| |.-.-.|
T Consensus 390 e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~ 449 (569)
T PRK04778 390 KQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEM 449 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHH
Confidence 888666666666666666677777777777777777777888777777 888 4433333
No 22
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.26 E-value=37 Score=44.71 Aligned_cols=214 Identities=19% Similarity=0.164 Sum_probs=106.6
Q ss_pred chhhhhhHHHHHHHHHhhcCcchHHHHHHH-HHHHhhhccCcchhhHHHHHHHHhhhhcCCCCcccCCCCCCCCCCChhH
Q 001727 45 SERSMKNLNEQLASVIFDCHPKDELMAKQA-KLVQEAGAGQEKPEVAAAVVKKELDETLKPPLSANENLPYAGAATAPMK 123 (1020)
Q Consensus 45 ~~~~~k~LnekLs~al~~~~~Kd~lvkqha-KvaeEAv~GwEKae~E~~~lK~qLe~~~~~~~~~e~rv~hld~A~~LKe 123 (1020)
++..+++.++|+..---+...|..-|++-. +.+.+ ..+...++|..+-..-.+....+++ ||-
T Consensus 346 ~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~-------~kn~~~~~k~~~~~~e~~~vk~~E~---------lK~ 409 (1293)
T KOG0996|consen 346 IEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKE-------LKNKFESLKKKFQDLEREDVKREEK---------LKR 409 (1293)
T ss_pred HHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH---------HHH
Confidence 355667777777654445555555555522 22221 2233344444444444444433333 444
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHhhhhHhhHH
Q 001727 124 CVKQLNFDQAEQEQRVHDAVVKTSGEFEKAQKELEKNLREANERIAKLAAENSHLSKALLVKEKMIEDLSKRKSQAEAEF 203 (1020)
Q Consensus 124 CmrQLr~~rEEqEq~i~eav~~~s~e~ek~k~elE~kl~e~~~~l~~~~aEn~~Ls~al~~k~~~i~el~~~k~~ae~e~ 203 (1020)
|.+++--+..+ |..+..++ .++|.-.....-.+.+...|...|...+.-=. .+|.+.+...+.+-
T Consensus 410 ~~~k~kKleke----~ek~~~~~--------~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~---~~l~e~~~~l~~~t 474 (1293)
T KOG0996|consen 410 LTSKIKKLEKE----IEKARRKK--------SELEKAPEKARIEIQKCQTEIEQLEELLEKEE---RELDEILDSLKQET 474 (1293)
T ss_pred HHHHHHHHHHH----HHHHHhhH--------HHHHhCchhhHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhh
Confidence 44444333221 22222111 13333333444444555555555544433222 22333333334444
Q ss_pred HHHHhhhhhhHhhhhhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhhhhhhhhhHHHHhHHHHHHHHHHHhhhcCCCchHH
Q 001727 204 STLMTRLDVTEKENAFLKYEFRILEKELEIRNEEMEYTRRSVEATHKQHLESVKKVAKLEAECERLRLLVRKKLPGSAAS 283 (1020)
Q Consensus 204 ~~l~~rLe~~eKen~sLkyE~~~l~kELeiR~~Ere~~~~sae~a~KQhlEsvKKiakLEaECqRLR~lvRKklPgpAal 283 (1020)
..+...++..||+.+-+.-.+....-|+.|=..|.++=....+++.|+--+.-+++-...+...+.+..+....|. |
T Consensus 475 ~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~---l 551 (1293)
T KOG0996|consen 475 EGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEE---L 551 (1293)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---h
Confidence 4455555555555555555555555555555555555566677777777777777777777777777777665443 4
Q ss_pred HhhHHHHHh
Q 001727 284 AKMKSEVEM 292 (1020)
Q Consensus 284 a~Mk~Eve~ 292 (1020)
-+||.|...
T Consensus 552 ~~~k~e~~~ 560 (1293)
T KOG0996|consen 552 PSLKQELKE 560 (1293)
T ss_pred hhHHHHHHH
Confidence 456666554
No 23
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=93.26 E-value=2 Score=43.55 Aligned_cols=62 Identities=23% Similarity=0.269 Sum_probs=30.0
Q ss_pred HHHHhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhHHHHHHH
Q 001727 762 ALKESKEMIEDQMENQKSINEDLDTQLTVAKAKLNEGFQKFSSLEVELEYRNNFCEELEATC 823 (1020)
Q Consensus 762 ~~keS~~l~E~Qle~~~~~~~~Let~L~~~e~E~~el~~Ki~sLE~ELe~e~~~~eEl~AkC 823 (1020)
.+..-..++|.+|+..-..-......|..+...++++-.++-.||.+...==.-++++..+|
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~ 138 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKY 138 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34444445555555444333444444555555556666666666555444333333333333
No 24
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=93.12 E-value=16 Score=48.00 Aligned_cols=63 Identities=25% Similarity=0.236 Sum_probs=29.4
Q ss_pred HHHhhhhhhHhhhhhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhhhhhhhhhHH-----HHhHHHHHHHHH
Q 001727 205 TLMTRLDVTEKENAFLKYEFRILEKELEIRNEEMEYTRRSVEATHKQHLESVKK-----VAKLEAECERLR 270 (1020)
Q Consensus 205 ~l~~rLe~~eKen~sLkyE~~~l~kELeiR~~Ere~~~~sae~a~KQhlEsvKK-----iakLEaECqRLR 270 (1020)
++..++.+++-.+..++.+++.++. .|-+..++-..++..+-+-|+|--.| ...+.+||+|+|
T Consensus 627 ~l~~~i~sL~~~~~~~~~~l~k~~e---l~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~~ 694 (1317)
T KOG0612|consen 627 ELKEEISSLEETLKAGKKELLKVEE---LKRENQERISDSEKEALEIKLERKLKMLQNELEQENAEHHRLR 694 (1317)
T ss_pred HHHhHHHHHHHHHHhhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444443 34444444444444444444443222 345677888883
No 25
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.77 E-value=2.3 Score=54.92 Aligned_cols=137 Identities=20% Similarity=0.154 Sum_probs=90.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhh-----------hhHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhh
Q 001727 746 LHESEEQIGNLETEVKALKESKEMIEDQMENQKSIN-----------EDLDTQLTVAKAKLNEGFQKFSSLEVELEYRNN 814 (1020)
Q Consensus 746 l~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~-----------~~Let~L~~~e~E~~el~~Ki~sLE~ELe~e~~ 814 (1020)
.+.+...|...++++..|++...-.+..+.....++ ..++..|.-....+++...++.-.|.||..=..
T Consensus 435 pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~ 514 (1293)
T KOG0996|consen 435 PEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLS 514 (1293)
T ss_pred chhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556666666666555554444444433222 455666666678888889999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhhhccC--CCCCCCCCccccccchhhhHHHHhhhHHHHHHHHHHHHHHHhhccC
Q 001727 815 FCEELEATCLELQLQLESVAKR--EPPSYGVNQGEKQSQNGWEMTAASIKLAECQETILNLGKQLKALAS 882 (1020)
Q Consensus 815 ~~eEl~AkC~ELqeQLer~~~~--~~~~~~~~~e~~~~k~e~EIaaAAeKLAECQETI~nLGKQLKALa~ 882 (1020)
.++...-+..+|+.+|++.... +-......-........-||.-+...|..--+|..+|..||.++..
T Consensus 515 ~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rq 584 (1293)
T KOG0996|consen 515 RHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQ 584 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999985531 1111111111122222347888889999999999988888877644
No 26
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=92.39 E-value=2.6 Score=50.71 Aligned_cols=154 Identities=24% Similarity=0.279 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHH-----------HHHhhhhhhhhhhHhH
Q 001727 718 NRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMI-----------EDQMENQKSINEDLDT 786 (1020)
Q Consensus 718 ~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~-----------E~Qle~~~~~~~~Let 786 (1020)
+++-+.++..|...+ .....+..+|..+-..|..|+.+|....++.... ...|..++.=-.....
T Consensus 220 leeae~~l~~L~~e~----~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~ 295 (522)
T PF05701_consen 220 LEEAEEELEELKEEL----EAAKDLESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKK 295 (522)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 334444444444444 3333455666666677777777777666522222 1112222222233344
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCccccccchhhhHHHHhhhHHHH
Q 001727 787 QLTVAKAKLNEGFQKFSSLEVELEYRNNFCEELEATCLELQLQLESVAKREPPSYGVNQGEKQSQNGWEMTAASIKLAEC 866 (1020)
Q Consensus 787 ~L~~~e~E~~el~~Ki~sLE~ELe~e~~~~eEl~AkC~ELqeQLer~~~~~~~~~~~~~e~~~~k~e~EIaaAAeKLAEC 866 (1020)
.|..+..|+..+...+.+|..||+..+.....+--+-....-.+.+... ...+.-.+|.++-..-.++
T Consensus 296 ~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~------------eL~~~r~eLea~~~~e~~~ 363 (522)
T PF05701_consen 296 ELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEA------------ELNKTRSELEAAKAEEEKA 363 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHH------------HHHHHHHHHHHHHhhhcch
Confidence 5666678888999999999999999988876654433333333332221 1222334555555566778
Q ss_pred HHHHHHHHHHHhhccCCcccc
Q 001727 867 QETILNLGKQLKALASPREAV 887 (1020)
Q Consensus 867 QETI~nLGKQLKALa~p~e~~ 887 (1020)
.+.+..|...|+-|..-.+.+
T Consensus 364 k~~~~~l~~~Lqql~~Eae~A 384 (522)
T PF05701_consen 364 KEAMSELPKALQQLSSEAEEA 384 (522)
T ss_pred hhhHHHHHHHHHHHHHHHHHH
Confidence 888888888888887766554
No 27
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=92.30 E-value=7.2 Score=39.91 Aligned_cols=89 Identities=22% Similarity=0.257 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhHHH
Q 001727 740 EALVTQLHESEEQIGNLETEVKALKESKEMIEDQMENQKSINEDLDTQLTVAKAKLNEGFQKFSSLEVELEYRNNFCEEL 819 (1020)
Q Consensus 740 E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~~~Let~L~~~e~E~~el~~Ki~sLE~ELe~e~~~~eEl 819 (1020)
+.+...|+.++.....+-.+..+.+....-+++++..++ +.+..++.|+..+...-..|.-++++....-+++
T Consensus 27 ~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt-------~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eL 99 (140)
T PF10473_consen 27 ESLERELEMSQENKECLILDAENSKAEIETLEEELEELT-------SELNQLELELDTLRSEKENLDKELQKKQEKVSEL 99 (140)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455555555555555555555566655544 3344445556666666666677788887777788
Q ss_pred HHHHHHHHHHhhhhcc
Q 001727 820 EATCLELQLQLESVAK 835 (1020)
Q Consensus 820 ~AkC~ELqeQLer~~~ 835 (1020)
+..+.++.-.|+....
T Consensus 100 E~~~~~~~~~l~~~E~ 115 (140)
T PF10473_consen 100 ESLNSSLENLLQEKEQ 115 (140)
T ss_pred HHHhHHHHHHHHHHHH
Confidence 8888888877776553
No 28
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.29 E-value=22 Score=44.36 Aligned_cols=135 Identities=21% Similarity=0.303 Sum_probs=95.5
Q ss_pred HHHHHHHHhhhhHhhHHHHHHhhhhhhHhhhhhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhhhhhhhhhHHHHhHHHHH
Q 001727 187 KMIEDLSKRKSQAEAEFSTLMTRLDVTEKENAFLKYEFRILEKELEIRNEEMEYTRRSVEATHKQHLESVKKVAKLEAEC 266 (1020)
Q Consensus 187 ~~i~el~~~k~~ae~e~~~l~~rLe~~eKen~sLkyE~~~l~kELeiR~~Ere~~~~sae~a~KQhlEsvKKiakLEaEC 266 (1020)
-++..+.+.....++-..++-..+....+.+..|..++-.+.-+|.=|...-.+.+...+.+.---..-.|++.-||-|=
T Consensus 440 ~lV~~~~k~~~e~e~s~~~~~~~i~~~k~~~e~le~~~kdL~s~L~~~~q~l~~qr~e~~~~~e~i~~~~ke~~~Le~En 519 (716)
T KOG4593|consen 440 GLVQKVDKHSLEMEASMEELYREITGQKKRLEKLEHELKDLQSQLSSREQSLLFQREESELLREKIEQYLKELELLEEEN 519 (716)
T ss_pred HHHHHHHHhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 35556666667777777777788888899999999999999999999999999999999999655666678899999999
Q ss_pred HHHHHHhhhcCCCchHHHhhHHHHHhhccchhhhhcccCCCCcccccccccCCCcchhh-HHHHHHhhHHhHHHHHHHH
Q 001727 267 ERLRLLVRKKLPGSAASAKMKSEVEMQGRDQMDMRRRKLSPTRDLIVRHATTESSHDIS-LLARLHDMEKENRTLKDIV 344 (1020)
Q Consensus 267 qRLR~lvRKklPgpAala~Mk~Eve~lg~d~~e~rrr~~~~~~~~~~~~~~~~~~~~~~-lt~rL~~~EeEnk~LKe~L 344 (1020)
.|||+++=.++ +.+|+.+.+-|-. ++...+ .+-... .-.++..+..|+.+||+.|
T Consensus 520 ~rLr~~~e~~~---------------l~gd~~~~~~rVl-----~~~~np---t~~~~~~~k~~~e~LqaE~~~lk~~l 575 (716)
T KOG4593|consen 520 DRLRAQLERRL---------------LQGDYEENITRVL-----HMSTNP---TSKARQIKKNRLEELQAELERLKERL 575 (716)
T ss_pred HHHHHHHHHHH---------------Hhhhhhhhcccee-----eecCCc---hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99996653322 3445555444321 111111 011122 5566777777887777644
No 29
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=92.01 E-value=4.6 Score=41.06 Aligned_cols=75 Identities=19% Similarity=0.317 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhhhhHhHHHHHHH---HHHHHhhhhhhhhHHHHHHh
Q 001727 738 RSEALVTQLHESEEQIGNLETEVKALKESKEMIEDQMENQKSINEDLDTQLTVAK---AKLNEGFQKFSSLEVELEYR 812 (1020)
Q Consensus 738 ~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~~~Let~L~~~e---~E~~el~~Ki~sLE~ELe~e 812 (1020)
..+.+..++.++++....+..++.+|..-++.+|.++.....--..+...+...+ +.+..+..+|..||.+|+.=
T Consensus 15 r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~a 92 (143)
T PF12718_consen 15 RAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEA 92 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHH
Confidence 3344444444444444444444444444444455554432211111111111111 12224555566666666543
No 30
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.22 E-value=60 Score=42.42 Aligned_cols=142 Identities=21% Similarity=0.301 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH----HHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhhhhHhHHHHH
Q 001727 715 QEENRRLRDELKSMAARLESATDRSEALVTQL----HESEEQIGNLETEVKALKESKEMIEDQMENQKSINEDLDTQLTV 790 (1020)
Q Consensus 715 ~eE~e~Lk~ek~~le~~L~~~~~~~E~~~~ql----~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~~~Let~L~~ 790 (1020)
.++++.++...++..+.+..|.+.+..+..-. .+-|..+.+|+.+|..++.-.......++..-..|..|
T Consensus 747 ~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l------ 820 (1174)
T KOG0933|consen 747 LEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERL------ 820 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 34555555555555666666666665553322 23344455555555544433333333333322222222
Q ss_pred HHHHHHHhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCccccccchhhhHHHHhhhHHHHHHHH
Q 001727 791 AKAKLNEGFQKFSSLEVELEYRNNFCEELEATCLELQLQLESVAKREPPSYGVNQGEKQSQNGWEMTAASIKLAECQETI 870 (1020)
Q Consensus 791 ~e~E~~el~~Ki~sLE~ELe~e~~~~eEl~AkC~ELqeQLer~~~~~~~~~~~~~e~~~~k~e~EIaaAAeKLAECQETI 870 (1020)
..|++++.+-+.+++.++ +..+..|..|+.++.-... +-..-+.+...+-..|.+|-.-+
T Consensus 821 -~lE~e~l~~e~~~~k~~l-------~~~~~~~~~l~~e~~~l~~------------kv~~~~~~~~~~~~el~~~k~k~ 880 (1174)
T KOG0933|consen 821 -QLEHEELEKEISSLKQQL-------EQLEKQISSLKSELGNLEA------------KVDKVEKDVKKAQAELKDQKAKQ 880 (1174)
T ss_pred -HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH------------HHHhHHhHHHHHHHHHHHHHHHH
Confidence 233333333333333333 3344444455555443332 22223344555556666666666
Q ss_pred HHHHHHHhhccC
Q 001727 871 LNLGKQLKALAS 882 (1020)
Q Consensus 871 ~nLGKQLKALa~ 882 (1020)
--..+++..+.+
T Consensus 881 ~~~dt~i~~~~~ 892 (1174)
T KOG0933|consen 881 RDIDTEISGLLT 892 (1174)
T ss_pred HhhhHHHhhhhh
Confidence 666666555544
No 31
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=90.89 E-value=7.2 Score=51.34 Aligned_cols=135 Identities=13% Similarity=0.139 Sum_probs=81.1
Q ss_pred CCccchhhhhhHHHHHHHHHhhcCcchHHHHHHHHHHHhhhccCcchhhHH-------HHHHHHhh-------hhcCC-C
Q 001727 41 KGVGSERSMKNLNEQLASVIFDCHPKDELMAKQAKLVQEAGAGQEKPEVAA-------AVVKKELD-------ETLKP-P 105 (1020)
Q Consensus 41 ~~~~~~~~~k~LnekLs~al~~~~~Kd~lvkqhaKvaeEAv~GwEKae~E~-------~~lK~qLe-------~~~~~-~ 105 (1020)
+...++..+..++..|..+......-+...+++.+..+++-..-.+++.+. ..++.+.+ .++.. +
T Consensus 601 ~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 680 (1201)
T PF12128_consen 601 SEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERK 680 (1201)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455777788888888888887777777777777766665543333333333 33322222 22111 1
Q ss_pred CcccCCCCCCCCCCChhHHHHHhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 001727 106 LSANENLPYAGAATAPMKCVKQLNFDQAEQEQRVHDAVVKTSGEFEKAQKELEKNLREANERIAKLAAENSH 177 (1020)
Q Consensus 106 ~~~e~rv~hld~A~~LKeCmrQLr~~rEEqEq~i~eav~~~s~e~ek~k~elE~kl~e~~~~l~~~~aEn~~ 177 (1020)
...+.++.-++.+ |+..-.++....++.+...++.-+.....|..+..++..++..+.+.+....++...
T Consensus 681 ~~~~~~l~~l~~~--l~~~~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~ 750 (1201)
T PF12128_consen 681 EQIEEQLNELEEE--LKQLKQELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKE 750 (1201)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233344445555 666666666666666677777766666777777777777777777666655554443
No 32
>PRK11637 AmiB activator; Provisional
Probab=90.56 E-value=19 Score=42.15 Aligned_cols=47 Identities=19% Similarity=0.313 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q 001727 720 RLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKES 766 (1020)
Q Consensus 720 ~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS 766 (1020)
.+..++..++..|...+..+..+..++.+++..|..++.++..+++.
T Consensus 72 ~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~ 118 (428)
T PRK11637 72 SLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQ 118 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444333
No 33
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=89.93 E-value=35 Score=37.73 Aligned_cols=97 Identities=22% Similarity=0.321 Sum_probs=57.2
Q ss_pred hhHHHHHhhhhhhhhHHHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHhhh
Q 001727 121 PMKCVKQLNFDQAEQEQRVHDAVV---KTSGEFEKAQKELEKNLREANERIAKLAAENSHLSKALLVKEKMIEDLSKRKS 197 (1020)
Q Consensus 121 LKeCmrQLr~~rEEqEq~i~eav~---~~s~e~ek~k~elE~kl~e~~~~l~~~~aEn~~Ls~al~~k~~~i~el~~~k~ 197 (1020)
|-.++..+|+...+......+.-. ....+...++.-++..|.++.+.+..+..+++.|- .+.+++
T Consensus 13 la~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~---~e~~~l--------- 80 (312)
T PF00038_consen 13 LASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLE---LEIDNL--------- 80 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHH---HHHHHH---------
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHh---hhhhhH---------
Confidence 566777777776666554443332 33455666788899999999999988888876432 223333
Q ss_pred hHhhHHHHHHhhhhhhHhhhhhhhhHHHHHHHHH
Q 001727 198 QAEAEFSTLMTRLDVTEKENAFLKYEFRILEKEL 231 (1020)
Q Consensus 198 ~ae~e~~~l~~rLe~~eKen~sLkyE~~~l~kEL 231 (1020)
..++.++..+++.....+..+..++..+.++|
T Consensus 81 --~~e~~~~r~k~e~e~~~~~~le~el~~lrk~l 112 (312)
T PF00038_consen 81 --KEELEDLRRKYEEELAERKDLEEELESLRKDL 112 (312)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 33444555556655666666666666665443
No 34
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=89.93 E-value=7 Score=40.35 Aligned_cols=43 Identities=26% Similarity=0.410 Sum_probs=22.2
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHH
Q 001727 731 RLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMIEDQ 773 (1020)
Q Consensus 731 ~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Q 773 (1020)
++...+..+..+..++.+.++.+..+++++..+++......+.
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~ 124 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELREL 124 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3444444444455555555555666666655555444444433
No 35
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=89.77 E-value=21 Score=38.18 Aligned_cols=147 Identities=27% Similarity=0.318 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHhhhhHhhHH---HHHHhhhhhhHhhhhhhhhHHHHHHHHHhhhh
Q 001727 159 KNLREANERIAKLAAENSHLSKALLVKEKMIEDLSKRKSQAEAEF---STLMTRLDVTEKENAFLKYEFRILEKELEIRN 235 (1020)
Q Consensus 159 ~kl~e~~~~l~~~~aEn~~Ls~al~~k~~~i~el~~~k~~ae~e~---~~l~~rLe~~eKen~sLkyE~~~l~kELeiR~ 235 (1020)
.+.....+.+..+.+||..|+.-|..-..-+.+|......-+.+. ..+..|+..++++...|+.|-.+|..
T Consensus 41 k~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~q------ 114 (201)
T PF13851_consen 41 KKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQ------ 114 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 334444446677777787777777655555555555555554443 35667777777877777777777653
Q ss_pred hhhhhhhhhHHHhhhhhhhhhHHHHhHHHHHHHHHHHhhhcCCCchHHHhhHHHHHhhccchhhhhcccCCCCccccccc
Q 001727 236 EEMEYTRRSVEATHKQHLESVKKVAKLEAECERLRLLVRKKLPGSAASAKMKSEVEMQGRDQMDMRRRKLSPTRDLIVRH 315 (1020)
Q Consensus 236 ~Ere~~~~sae~a~KQhlEsvKKiakLEaECqRLR~lvRKklPgpAala~Mk~Eve~lg~d~~e~rrr~~~~~~~~~~~~ 315 (1020)
++.+|+.|+..|..-+...+ .||.. +
T Consensus 115 ----------------------r~~kle~ErdeL~~kf~~~i----------~evqQ----------k------------ 140 (201)
T PF13851_consen 115 ----------------------RFEKLEQERDELYRKFESAI----------QEVQQ----------K------------ 140 (201)
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHHH----------HHHHH----------H------------
Confidence 56788888887765543211 11111 0
Q ss_pred ccCCCcchhhHHHHHHhhHHhHHHHHHHHhhhhhhhhHHHhhhhhhhhhhhHHHHHHHHh
Q 001727 316 ATTESSHDISLLARLHDMEKENRTLKDIVITKSTELQASRMMFSRTASRLSYVESQLREI 375 (1020)
Q Consensus 316 ~~~~~~~~~~lt~rL~~~EeEnk~LKe~Lakkn~ELQ~sr~m~a~taskLs~le~ql~~l 375 (1020)
...|-.-+|--..+|-+.|.+|+.+|+.+-.-+.-.+.-+..|-..+.+.
T Consensus 141 ----------~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~~nldp~~~~~v~~~l~~~ 190 (201)
T PF13851_consen 141 ----------TGLKNLLLEKKLQALSEQLEKKEAQLNEVLAAANLDPAALSQVSKKLEDV 190 (201)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 11222334455566788888999998877776666666666666666544
No 36
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=89.72 E-value=18 Score=38.65 Aligned_cols=113 Identities=25% Similarity=0.342 Sum_probs=65.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHH-HHHHHHHHHhhhhHhhHHHHHHhhhhhhHhhhhhhhhHHHH
Q 001727 148 GEFEKAQKELEKNLREANERIAKLAAENSHLSKALLVK-EKMIEDLSKRKSQAEAEFSTLMTRLDVTEKENAFLKYEFRI 226 (1020)
Q Consensus 148 ~e~ek~k~elE~kl~e~~~~l~~~~aEn~~Ls~al~~k-~~~i~el~~~k~~ae~e~~~l~~rLe~~eKen~sLkyE~~~ 226 (1020)
-...+++ +|...|.++..++..+..||..|-. ++-| ++.|..... .+++ |-.-|.....|.-.||-.++.
T Consensus 9 ar~~ki~-~L~n~l~elq~~l~~l~~ENk~Lk~-lq~Rq~kAL~k~e~----~e~~---Lpqll~~h~eEvr~Lr~~LR~ 79 (194)
T PF15619_consen 9 ARLHKIK-ELQNELAELQRKLQELRKENKTLKQ-LQKRQEKALQKYED----TEAE---LPQLLQRHNEEVRVLRERLRK 79 (194)
T ss_pred hhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHh----hhhh---HHHHHHHHHHHHHHHHHHHHH
Confidence 3345565 8999999999999999999998754 4433 334422211 1222 233334445555555555444
Q ss_pred HHHHHhhhhhhhhhhhhhHHHhhhhhhhhhHHHHhHHHHHHHHHHHhh-hcCCCchHH
Q 001727 227 LEKELEIRNEEMEYTRRSVEATHKQHLESVKKVAKLEAECERLRLLVR-KKLPGSAAS 283 (1020)
Q Consensus 227 l~kELeiR~~Ere~~~~sae~a~KQhlEsvKKiakLEaECqRLR~lvR-KklPgpAal 283 (1020)
.+. .+|..|+.+.-.-+ -|-++..+|++|..|+- |.||...-|
T Consensus 80 ~q~--~~r~~~~klk~~~~------------el~k~~~~l~~L~~L~~dknL~eReeL 123 (194)
T PF15619_consen 80 SQE--QERELERKLKDKDE------------ELLKTKDELKHLKKLSEDKNLAEREEL 123 (194)
T ss_pred HHH--HHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHcCCchhHHHH
Confidence 332 12333332222222 24568899999999998 778876544
No 37
>PHA02562 46 endonuclease subunit; Provisional
Probab=89.40 E-value=23 Score=42.16 Aligned_cols=65 Identities=9% Similarity=0.077 Sum_probs=31.3
Q ss_pred hhhhhHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHhhhhcc-CCCCCCCC
Q 001727 779 SINEDLDTQLTVAKAKLNEGFQKFSSLEVELEYRNNFCEELEATCLELQLQLESVAK-REPPSYGV 843 (1020)
Q Consensus 779 ~~~~~Let~L~~~e~E~~el~~Ki~sLE~ELe~e~~~~eEl~AkC~ELqeQLer~~~-~~~~~~~~ 843 (1020)
..+..++.++..++.++..+...+..++..|.+-......+......++..+.-+.. ..||.|..
T Consensus 227 ~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~ 292 (562)
T PHA02562 227 EEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQ 292 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence 333444555555555555555555554444444444444444555555555444421 35555543
No 38
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=89.35 E-value=59 Score=39.46 Aligned_cols=175 Identities=21% Similarity=0.207 Sum_probs=89.0
Q ss_pred hhhhhhHHHHHHHHHhh-cCcc-h-HHHHHHHHHHHhhhcc--CcchhhHHHHHHHHhhhhcCCCCcccCCCCCCCCCCC
Q 001727 46 ERSMKNLNEQLASVIFD-CHPK-D-ELMAKQAKLVQEAGAG--QEKPEVAAAVVKKELDETLKPPLSANENLPYAGAATA 120 (1020)
Q Consensus 46 ~~~~k~LnekLs~al~~-~~~K-d-~lvkqhaKvaeEAv~G--wEKae~E~~~lK~qLe~~~~~~~~~e~rv~hld~A~~ 120 (1020)
.+-+..|+.||-.+... ..+. | .+++..++=.+.++.+ +..+.+|..+.+.|...++ ..
T Consensus 68 kr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~~~~~~k~ele~~~~q~~~~~--------------~e-- 131 (522)
T PF05701_consen 68 KRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKELEQGIAEEASVAWKAELESAREQYASAV--------------AE-- 131 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHH--------------HH--
Confidence 44577778888776643 1221 1 4566666666666655 4444444444444443332 12
Q ss_pred hhHHHHHhhhhhhhhHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhH-----------HhHHHHHHHHH
Q 001727 121 PMKCVKQLNFDQAEQEQRVHD--AVVKTSGEFEKAQKELEKNLREANERIAKLAAENS-----------HLSKALLVKEK 187 (1020)
Q Consensus 121 LKeCmrQLr~~rEEqEq~i~e--av~~~s~e~ek~k~elE~kl~e~~~~l~~~~aEn~-----------~Ls~al~~k~~ 187 (1020)
|.--.++|+.+|.|-.--+-. ...+...+-.++=..-..++.++...|..+...-. ....++.+|+.
T Consensus 132 L~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~ 211 (522)
T PF05701_consen 132 LDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQ 211 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666777776665443311 11111111111112222334444443333222211 11223445555
Q ss_pred HHHHHHHhhhhHhhHHHHHHhhhhh---hHhhhhhhhhHHHHHHHHHhhhhh
Q 001727 188 MIEDLSKRKSQAEAEFSTLMTRLDV---TEKENAFLKYEFRILEKELEIRNE 236 (1020)
Q Consensus 188 ~i~el~~~k~~ae~e~~~l~~rLe~---~eKen~sLkyE~~~l~kELeiR~~ 236 (1020)
.+..+.....+++.++..|...+.+ ++........++..|++||+-...
T Consensus 212 ~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~ 263 (522)
T PF05701_consen 212 DAEEWEKELEEAEEELEELKEELEAAKDLESKLAEASAELESLQAELEAAKE 263 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666667777777777666633 334455566788888888877766
No 39
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=89.28 E-value=64 Score=39.75 Aligned_cols=77 Identities=12% Similarity=0.179 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHhhhhHhhHHHHHHhhhhhhHhhhhhhhhHH
Q 001727 148 GEFEKAQKELEKNLREANERIAKLAAENSHLSKALLVKEKMIEDLSKRKSQAEAEFSTLMTRLDVTEKENAFLKYEF 224 (1020)
Q Consensus 148 ~e~ek~k~elE~kl~e~~~~l~~~~aEn~~Ls~al~~k~~~i~el~~~k~~ae~e~~~l~~rLe~~eKen~sLkyE~ 224 (1020)
..+++-...|+.++..+...|.....++..|..-..+.......+..++.....+...+..|+..+|.++..|.-..
T Consensus 160 ~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 160 EQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444566666666666666666665555444444444444444444444445555555555555555554444
No 40
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=89.27 E-value=28 Score=43.53 Aligned_cols=182 Identities=21% Similarity=0.162 Sum_probs=112.0
Q ss_pred chhhHHHHHHHHhhhhcCCCCcccCCCCCCCCCCChhHHHHHhhhhhhhhHHH-----HHHHHHHhhhhHHHHHHHHHHH
Q 001727 86 KPEVAAAVVKKELDETLKPPLSANENLPYAGAATAPMKCVKQLNFDQAEQEQR-----VHDAVVKTSGEFEKAQKELEKN 160 (1020)
Q Consensus 86 Kae~E~~~lK~qLe~~~~~~~~~e~rv~hld~A~~LKeCmrQLr~~rEEqEq~-----i~eav~~~s~e~ek~k~elE~k 160 (1020)
-+.-|..+||..|-+++.+-. |+||=.+++.+.+|-|.. -+.++.+|-+-.+|.---|++|
T Consensus 427 alr~e~kslk~ela~~l~~De--------------LaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K 492 (961)
T KOG4673|consen 427 ALRREQKSLKKELAAALLKDE--------------LAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEK 492 (961)
T ss_pred HHHHHHHHHHHHHHHhhhhHH--------------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 355567777777777776633 999999999999998743 3445555544444444344444
Q ss_pred HHHHHHHHHHHHhhhHHhHHHHHHHHHH-------HHHHHHhhhhHhhHHHHHHhhhhhhHhhhhhhhhHHHHHHHHHhh
Q 001727 161 LREANERIAKLAAENSHLSKALLVKEKM-------IEDLSKRKSQAEAEFSTLMTRLDVTEKENAFLKYEFRILEKELEI 233 (1020)
Q Consensus 161 l~e~~~~l~~~~aEn~~Ls~al~~k~~~-------i~el~~~k~~ae~e~~~l~~rLe~~eKen~sLkyE~~~l~kELei 233 (1020)
+-+ .+.++..|-..|-.+|..|+.+ |..++-.+.+.+-+...++++.+.+|-.+.+++.=+..+-+.|.-
T Consensus 493 ~ge---~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk 569 (961)
T KOG4673|consen 493 KGE---LITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQK 569 (961)
T ss_pred hhh---HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 443 4556677777888888888765 333444444445555566667777777777776666666665555
Q ss_pred hhhhhhhhhhhHHHhhhhhhhhhHHHHhHHHHHHHHHHHhhhcCCCchHH---HhhHHHHHhhccchhh
Q 001727 234 RNEEMEYTRRSVEATHKQHLESVKKVAKLEAECERLRLLVRKKLPGSAAS---AKMKSEVEMQGRDQMD 299 (1020)
Q Consensus 234 R~~Ere~~~~sae~a~KQhlEsvKKiakLEaECqRLR~lvRKklPgpAal---a~Mk~Eve~lg~d~~e 299 (1020)
||-=+ -|-|+-+|-+-|.-+.-| |.-++|+= .+|. ..||-|++.|.|..-.
T Consensus 570 ~nrlk------Qdear~~~~~lvqqv~dL-------R~~L~~~E--q~aarrEd~~R~Ei~~LqrRlqa 623 (961)
T KOG4673|consen 570 ENRLK------QDEARERESMLVQQVEDL-------RQTLSKKE--QQAARREDMFRGEIEDLQRRLQA 623 (961)
T ss_pred Hhhhh------hhHHHHHHHHHHHHHHHH-------HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 54322 356666776666655444 44444431 1111 4589999988766533
No 41
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=89.22 E-value=2 Score=45.10 Aligned_cols=95 Identities=25% Similarity=0.262 Sum_probs=57.0
Q ss_pred HHHhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHhhhhHhhHHH
Q 001727 125 VKQLNFDQAEQEQRVHDAVVKTSGEFEKAQKELEKNLREANERIAKLAAENSHLSKALLVKEKMIEDLSKRKSQAEAEFS 204 (1020)
Q Consensus 125 mrQLr~~rEEqEq~i~eav~~~s~e~ek~k~elE~kl~e~~~~l~~~~aEn~~Ls~al~~k~~~i~el~~~k~~ae~e~~ 204 (1020)
+-++...+.+-.+++.++..+. .+.++.-.+.+..|.++...+..+..+...|...|.+|.+.+..|+++......+++
T Consensus 83 Lael~r~~~el~~~L~~~~~~l-~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~ 161 (194)
T PF08614_consen 83 LAELYRSKGELAQQLVELNDEL-QELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLN 161 (194)
T ss_dssp --------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccc-chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555666666666555443 333333345667777777788888888888888899999999999999999999999
Q ss_pred HHHhhhhhhHhhhhhh
Q 001727 205 TLMTRLDVTEKENAFL 220 (1020)
Q Consensus 205 ~l~~rLe~~eKen~sL 220 (1020)
.+..++..+++||..|
T Consensus 162 ~~e~k~~~l~~En~~L 177 (194)
T PF08614_consen 162 MLEEKLRKLEEENREL 177 (194)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999887
No 42
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=89.20 E-value=14 Score=40.91 Aligned_cols=107 Identities=27% Similarity=0.348 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHHHhhhhh
Q 001727 723 DELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMIEDQMENQKSINEDLDTQLTVAKAKLNEGFQKF 802 (1020)
Q Consensus 723 ~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~~~Let~L~~~e~E~~el~~Ki 802 (1020)
..++.+...+..+.+.++.+...+...++++.-+++++..+.+-..-++.++...+... ++..+..|+..+...+
T Consensus 31 ~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~-----e~~aL~~E~~~ak~r~ 105 (239)
T COG1579 31 KALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDER-----ELRALNIEIQIAKERI 105 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHH-----HHHHHHHHHHHHHHHH
Confidence 34455555577888888888888899999999999999988888888888885555332 2444555666666666
Q ss_pred hhhHHHHHHhhhhhHHHHHHHHHHHHHhhhhc
Q 001727 803 SSLEVELEYRNNFCEELEATCLELQLQLESVA 834 (1020)
Q Consensus 803 ~sLE~ELe~e~~~~eEl~AkC~ELqeQLer~~ 834 (1020)
.+||.||..=..-.+++...-..|++++.+..
T Consensus 106 ~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e 137 (239)
T COG1579 106 NSLEDELAELMEEIEKLEKEIEDLKERLERLE 137 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666544444444444455555555433
No 43
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=89.20 E-value=13 Score=45.12 Aligned_cols=162 Identities=15% Similarity=0.146 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhh---hhHhHHHHHHHHH
Q 001727 718 NRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMIEDQMENQKSIN---EDLDTQLTVAKAK 794 (1020)
Q Consensus 718 ~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~---~~Let~L~~~e~E 794 (1020)
++..++.+..++.++...-+.++.-..-.+..++.+..+...|..+++.+..+...+..-...| ..-......++.+
T Consensus 277 l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~leke 356 (569)
T PRK04778 277 LDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQ 356 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHH
Confidence 3344455555666666666666665666666777777777777777777777777777766554 2223334556677
Q ss_pred HHHhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCccccccchhhhHHHHhhhHHHHHHHHHHHH
Q 001727 795 LNEGFQKFSSLEVELEYRNNFCEELEATCLELQLQLESVAKREPPSYGVNQGEKQSQNGWEMTAASIKLAECQETILNLG 874 (1020)
Q Consensus 795 ~~el~~Ki~sLE~ELe~e~~~~eEl~AkC~ELqeQLer~~~~~~~~~~~~~e~~~~k~e~EIaaAAeKLAECQETI~nLG 874 (1020)
++.+...+..++..+......++++...+.++..+++.+...... -.+....-..+...|-.+|-.-+++|..+.
T Consensus 357 L~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~e-----i~e~l~~Lrk~E~eAr~kL~~~~~~L~~ik 431 (569)
T PRK04778 357 LESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEK-----LSEMLQGLRKDELEAREKLERYRNKLHEIK 431 (569)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777788888888888888888888888877641000 000001112334455567777777777777
Q ss_pred HHHhhccCCc
Q 001727 875 KQLKALASPR 884 (1020)
Q Consensus 875 KQLKALa~p~ 884 (1020)
+.+....-|.
T Consensus 432 r~l~k~~lpg 441 (569)
T PRK04778 432 RYLEKSNLPG 441 (569)
T ss_pred HHHHHcCCCC
Confidence 7766554543
No 44
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=89.02 E-value=8.8 Score=43.78 Aligned_cols=157 Identities=20% Similarity=0.264 Sum_probs=93.1
Q ss_pred hhhhHHHHHHHHH-------hhcCcchHHHHHHHHHHHhhh----ccCcchh----------hHHHHHHHHhhhhcCCCC
Q 001727 48 SMKNLNEQLASVI-------FDCHPKDELMAKQAKLVQEAG----AGQEKPE----------VAAAVVKKELDETLKPPL 106 (1020)
Q Consensus 48 ~~k~LnekLs~al-------~~~~~Kd~lvkqhaKvaeEAv----~GwEKae----------~E~~~lK~qLe~~~~~~~ 106 (1020)
....|.+.|.+++ -+++.||+|++-+....++.. ..|.--- .-...|.+.|-..-..|.
T Consensus 98 ~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN~ 177 (306)
T PF04849_consen 98 RNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEENE 177 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHHHHHHHHHHHHHH
Confidence 3444555555554 466889999999998777654 2221100 012333333333333333
Q ss_pred cccCCCCCCCCCCC---------hhHHHHHhhhhhhhhHHHHHHHHHHhhhhHHHHH---HHHHHHHHHHHHHHHHHHhh
Q 001727 107 SANENLPYAGAATA---------PMKCVKQLNFDQAEQEQRVHDAVVKTSGEFEKAQ---KELEKNLREANERIAKLAAE 174 (1020)
Q Consensus 107 ~~e~rv~hld~A~~---------LKeCmrQLr~~rEEqEq~i~eav~~~s~e~ek~k---~elE~kl~e~~~~l~~~~aE 174 (1020)
.+..-++||+..|. +.+|++||+.+... =-.+.+.+..++.+...-+ ..|-++|+++++++...++|
T Consensus 178 ~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~q-ia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~E 256 (306)
T PF04849_consen 178 QLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQ-IASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAE 256 (306)
T ss_pred HHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44444444443322 56899999988743 2356677777776654433 34779999999999999999
Q ss_pred hHHhHHHHHHHHHHHHHHHHhhhhHhhHHHHHHhhhhh
Q 001727 175 NSHLSKALLVKEKMIEDLSKRKSQAEAEFSTLMTRLDV 212 (1020)
Q Consensus 175 n~~Ls~al~~k~~~i~el~~~k~~ae~e~~~l~~rLe~ 212 (1020)
|..|...|.+= ++.-.+..+++.+|+.|-.-
T Consensus 257 nEeL~q~L~~s-------ke~Q~~L~aEL~elqdkY~E 287 (306)
T PF04849_consen 257 NEELQQHLQAS-------KESQRQLQAELQELQDKYAE 287 (306)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 99988776532 33333334555555555443
No 45
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=88.80 E-value=40 Score=41.99 Aligned_cols=223 Identities=19% Similarity=0.280 Sum_probs=117.2
Q ss_pred hhHHHHHhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHhhhhHh
Q 001727 121 PMKCVKQLNFDQAEQEQRVHDAVVKTSGEFEKAQKELEKNLREANERIAKLAAENSHLSKALLVKEKMIEDLSKRKSQAE 200 (1020)
Q Consensus 121 LKeCmrQLr~~rEEqEq~i~eav~~~s~e~ek~k~elE~kl~e~~~~l~~~~aEn~~Ls~al~~k~~~i~el~~~k~~ae 200 (1020)
|+++++||..=|++--+.|..- ..-+..++..++.++..+..|-....+-+++-++-|.+|.......-
T Consensus 2 l~e~l~qlq~Erd~ya~~lk~e-----------~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~ 70 (617)
T PF15070_consen 2 LMESLKQLQAERDQYAQQLKEE-----------SAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPP 70 (617)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 7899999988887744444433 33466667777777777777777777777777777777664433111
Q ss_pred --------hHH-HHHHhhhhhhHhhhhhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhhhhhhhhhHHHHhHHHHHHHHHH
Q 001727 201 --------AEF-STLMTRLDVTEKENAFLKYEFRILEKELEIRNEEMEYTRRSVEATHKQHLESVKKVAKLEAECERLRL 271 (1020)
Q Consensus 201 --------~e~-~~l~~rLe~~eKen~sLkyE~~~l~kELeiR~~Ere~~~~sae~a~KQhlEsvKKiakLEaECqRLR~ 271 (1020)
++. ..|+..++.+.||...|. .+|+....+.+ .-++-.-|---+|..||-.++|++.
T Consensus 71 ~~~~pa~pse~E~~Lq~E~~~L~kElE~L~-------~qlqaqv~~ne-------~Ls~L~~EqEerL~ELE~~le~~~e 136 (617)
T PF15070_consen 71 PPEPPAGPSEVEQQLQAEAEHLRKELESLE-------EQLQAQVENNE-------QLSRLNQEQEERLAELEEELERLQE 136 (617)
T ss_pred CccccccchHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011 123333333333333332 22222111111 0111222333455566666666555
Q ss_pred Hhh--hcC---------CCchHHHh---hHHHHHhhccchhhhhcccCCCCcccccccccCCCcchhh--HHHHHHhhHH
Q 001727 272 LVR--KKL---------PGSAASAK---MKSEVEMQGRDQMDMRRRKLSPTRDLIVRHATTESSHDIS--LLARLHDMEK 335 (1020)
Q Consensus 272 lvR--Kkl---------PgpAala~---Mk~Eve~lg~d~~e~rrr~~~~~~~~~~~~~~~~~~~~~~--lt~rL~~~Ee 335 (1020)
-.. .+| .-.-|+++ ||.-+..+...|+..---+ +-..+. +..-.-.. |..+|..+++
T Consensus 137 ~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~------~elt~~-lq~Eq~~~keL~~kl~~l~~ 209 (617)
T PF15070_consen 137 QQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNEN------MELTSA-LQSEQHVKKELQKKLGELQE 209 (617)
T ss_pred HHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh------hHhhHH-HHHHHHHHHHHHHHHHHHHH
Confidence 431 111 00112222 3333333332222111000 000000 01111122 9999999999
Q ss_pred hHHHHHHHHhhhhhhhhHHHhhhhhhhhhhhHHHHHHHHh
Q 001727 336 ENRTLKDIVITKSTELQASRMMFSRTASRLSYVESQLREI 375 (1020)
Q Consensus 336 Enk~LKe~Lakkn~ELQ~sr~m~a~taskLs~le~ql~~l 375 (1020)
+-..+|+-|.-|+.|++..+.......+.|.+..+.-..+
T Consensus 210 ~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~q~l 249 (617)
T PF15070_consen 210 KLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVAAYQQL 249 (617)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888888887776654433
No 46
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=88.79 E-value=13 Score=46.62 Aligned_cols=149 Identities=19% Similarity=0.198 Sum_probs=106.9
Q ss_pred hhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhh
Q 001727 737 DRSEALVTQLHESEEQIGNLETEVKALKESKEMIEDQMENQKSINEDLDTQLTVAKAKLNEGFQKFSSLEVELEYRNNFC 816 (1020)
Q Consensus 737 ~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~~~Let~L~~~e~E~~el~~Ki~sLE~ELe~e~~~~ 816 (1020)
+..|..+.+-+++|..+.-|+.||...++-...+|.++...-.....-.....++-..+..++.|-..||.=|-.|...=
T Consensus 538 e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriK 617 (697)
T PF09726_consen 538 ECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIK 617 (697)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 45567788889999999999999999999999999877432221011122345566778888889899999999988888
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCCCCCccccccchhhhHHHHhhhHHHHHHHHHHHHHHHhhccCCccccccccccccC
Q 001727 817 EELEATCLELQLQLESVAKREPPSYGVNQGEKQSQNGWEMTAASIKLAECQETILNLGKQLKALASPREAVLFDKVFSTT 896 (1020)
Q Consensus 817 eEl~AkC~ELqeQLer~~~~~~~~~~~~~e~~~~k~e~EIaaAAeKLAECQETI~nLGKQLKALa~p~e~~lfDk~~stt 896 (1020)
.++-.-..+-.-|||-.. +...++|.||..-=-|+| ||-|+-|. |...+.+
T Consensus 618 ldLfsaLg~akrq~ei~~------------~~~~~~d~ei~~lk~ki~-----------~~~av~p~------~~~~~~~ 668 (697)
T PF09726_consen 618 LDLFSALGDAKRQLEIAQ------------GQLRKKDKEIEELKAKIA-----------QLLAVMPS------DSYCSAI 668 (697)
T ss_pred HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH-----------HHHhcCCc------cccccCC
Confidence 888888888888888544 367788999987666666 45555441 1223567
Q ss_pred CCCccccchhhhcccchh
Q 001727 897 NPAITATNNRRLNQRFSL 914 (1020)
Q Consensus 897 ~~~~~~~~~~~~~~rssl 914 (1020)
+|.+..|..++|+...+.
T Consensus 669 ~~~~~~~~~~~~~~~~~~ 686 (697)
T PF09726_consen 669 TPPTPHYSSKFLNSSPSG 686 (697)
T ss_pred CCCCccchhhhccCCCCC
Confidence 777777887866655443
No 47
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=88.70 E-value=18 Score=41.02 Aligned_cols=39 Identities=23% Similarity=0.253 Sum_probs=18.8
Q ss_pred HHHHHhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHhh
Q 001727 793 AKLNEGFQKFSSLEVELEYRNNFCEELEATCLELQLQLE 831 (1020)
Q Consensus 793 ~E~~el~~Ki~sLE~ELe~e~~~~eEl~AkC~ELqeQLe 831 (1020)
.+++.+++.+..+..+|+..+....++..+...++.+++
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~ 247 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIE 247 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555444444444444443
No 48
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=88.68 E-value=7.9 Score=44.06 Aligned_cols=126 Identities=18% Similarity=0.157 Sum_probs=73.1
Q ss_pred cccCchhHHHHHHHHHHHhhhhcCCcccHHHHHHHHHHHHHHHHhhhccccchhhhHHHHhhhcCCcccccccccccccc
Q 001727 620 FQWNPSELHAVLQKFVCACNDLLGGKADLDKFAEELSSALDWIMNNCIAHKDASRARNKVKKHFGLLVESNEVHIPEEQS 699 (1020)
Q Consensus 620 fq~k~sEL~~~Le~f~~~C~dvL~gka~le~f~~EL~~~L~wi~n~~~s~~d~s~~~d~i~k~f~~~~~~dkv~l~e~k~ 699 (1020)
|.|+..=+....+.+......+-..+..|.+...-|..++.-+.+..-.+. .++..--...
T Consensus 135 YeWR~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~------~e~~~L~~~~------------- 195 (312)
T smart00787 135 YEWRMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALE------EELRQLKQLE------------- 195 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhH-------------
Confidence 788887777777777777777777777777777767666666665542222 1110000000
Q ss_pred cccccCcccccccccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHH
Q 001727 700 SASLQGQNVLSQSNLQEENRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMIED 772 (1020)
Q Consensus 700 ~c~~~~~~~~~q~~~~eE~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~ 772 (1020)
+ +++.|+++|+.++++++..+..++..-...++.+..|+++.+..|.....+...+...-.-++.
T Consensus 196 -------~-e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 196 -------D-ELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred -------H-HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 1456778999999988777766665555555555555555555444444444443333333333
No 49
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=88.00 E-value=1.1e+02 Score=40.88 Aligned_cols=220 Identities=24% Similarity=0.260 Sum_probs=113.2
Q ss_pred HHHHHHHhhcCcchHHHHHHH-HHHHhhh----ccCcchhhHHHHHHHHhhhhcCCCCcc--------------------
Q 001727 54 EQLASVIFDCHPKDELMAKQA-KLVQEAG----AGQEKPEVAAAVVKKELDETLKPPLSA-------------------- 108 (1020)
Q Consensus 54 ekLs~al~~~~~Kd~lvkqha-KvaeEAv----~GwEKae~E~~~lK~qLe~~~~~~~~~-------------------- 108 (1020)
++|.....++.-++.-+.||. |.++|=+ .--.+.++++..++.+|+.+.+.+-.+
T Consensus 475 ~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d 554 (1317)
T KOG0612|consen 475 EKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELD 554 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhh
Confidence 555555555553444444443 6666544 344566677777777777664443332
Q ss_pred ----cCCCCCCCCCCChhHHHHHhhhhhh---hhHHHH---HHHHHHhhhhHHHHHHHHHHH---HHHHHHHHHHHHhhh
Q 001727 109 ----NENLPYAGAATAPMKCVKQLNFDQA---EQEQRV---HDAVVKTSGEFEKAQKELEKN---LREANERIAKLAAEN 175 (1020)
Q Consensus 109 ----e~rv~hld~A~~LKeCmrQLr~~rE---EqEq~i---~eav~~~s~e~ek~k~elE~k---l~e~~~~l~~~~aEn 175 (1020)
-+-+.||--- .++|++||-+..+ +-++++ ...-.+.+.+..+.+.++|.. -.+.+..+..+..++
T Consensus 555 ~~~e~~~~~kl~~~--~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i 632 (1317)
T KOG0612|consen 555 MRAESEDAGKLRKH--SKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEI 632 (1317)
T ss_pred hhhhHHHHhhHhhh--hhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 1122333333 5677777777666 233332 333345566666666665532 233333455555555
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhhHhhHHHHHHhhhhhhHhhh--hhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhhhhhh
Q 001727 176 SHLSKALLVKEKMIEDLSKRKSQAEAEFSTLMTRLDVTEKEN--AFLKYEFRILEKELEIRNEEMEYTRRSVEATHKQHL 253 (1020)
Q Consensus 176 ~~Ls~al~~k~~~i~el~~~k~~ae~e~~~l~~rLe~~eKen--~sLkyE~~~l~kELeiR~~Ere~~~~sae~a~KQhl 253 (1020)
..|-..+.++..-+..+.+. -...+.++...|+++ .-+-|++.+++.+++=-+-|..--
T Consensus 633 ~sL~~~~~~~~~~l~k~~el-------~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~------------ 693 (1317)
T KOG0612|consen 633 SSLEETLKAGKKELLKVEEL-------KRENQERISDSEKEALEIKLERKLKMLQNELEQENAEHHRL------------ 693 (1317)
T ss_pred HHHHHHHHhhhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence 55555555555544444332 223344455556633 344456666777666544444332
Q ss_pred hhhHHHHhHHHHHHHHHHHh------hhcCCCchHHHhhHHHHHhhccchhhh
Q 001727 254 ESVKKVAKLEAECERLRLLV------RKKLPGSAASAKMKSEVEMQGRDQMDM 300 (1020)
Q Consensus 254 EsvKKiakLEaECqRLR~lv------RKklPgpAala~Mk~Eve~lg~d~~e~ 300 (1020)
+++-=|++|+.+-.-| |-++|| -+-+|-.|++.|-.|+.-.
T Consensus 694 ----~L~~~e~~~~e~~~~lseek~ar~k~e~--~~~~i~~e~e~L~~d~~~~ 740 (1317)
T KOG0612|consen 694 ----RLQDKEAQMKEIESKLSEEKSAREKAEN--LLLEIEAELEYLSNDYKQS 740 (1317)
T ss_pred ----HHhhHHHHHHHHHHHhcccccHHHHHHH--HHHHHHHHHHHHhhhhhhh
Confidence 1111166666654332 333443 2356778888888776444
No 50
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=87.66 E-value=10 Score=43.01 Aligned_cols=115 Identities=25% Similarity=0.277 Sum_probs=60.6
Q ss_pred cccCchhHHHHHHHHHHHhhhhcCCcccHHHHHHHHHHHHHHHHhhhccccchhhhHHHHhhhcCCcccccccccccccc
Q 001727 620 FQWNPSELHAVLQKFVCACNDLLGGKADLDKFAEELSSALDWIMNNCIAHKDASRARNKVKKHFGLLVESNEVHIPEEQS 699 (1020)
Q Consensus 620 fq~k~sEL~~~Le~f~~~C~dvL~gka~le~f~~EL~~~L~wi~n~~~s~~d~s~~~d~i~k~f~~~~~~dkv~l~e~k~ 699 (1020)
+.|+..-+......+......|-...+.|.+....|.-++.-+.+..-.+. .++..--.....
T Consensus 140 YeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~------~e~~~Lk~~~~e----------- 202 (325)
T PF08317_consen 140 YEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELE------EELENLKQLVEE----------- 202 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhh-----------
Confidence 778877666666666666666666666666666666666665555532222 222111000000
Q ss_pred cccccCcccccccccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHH
Q 001727 700 SASLQGQNVLSQSNLQEENRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVK 761 (1020)
Q Consensus 700 ~c~~~~~~~~~q~~~~eE~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~ 761 (1020)
+-.|+.++++.++.++..+...+..-...+..+..++++.+..|..+..+..
T Consensus 203 ----------~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~ 254 (325)
T PF08317_consen 203 ----------IESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQ 254 (325)
T ss_pred ----------hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1234578888888887666666644444444444444444444444333333
No 51
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=87.54 E-value=36 Score=38.49 Aligned_cols=37 Identities=27% Similarity=0.282 Sum_probs=19.3
Q ss_pred hHHHHhhhHHHHHHHHHHHHHHHhhccCCccccccccccc
Q 001727 855 EMTAASIKLAECQETILNLGKQLKALASPREAVLFDKVFS 894 (1020)
Q Consensus 855 EIaaAAeKLAECQETI~nLGKQLKALa~p~e~~lfDk~~s 894 (1020)
++..+...+++=+..+..+..+|... .=.++||-+|.
T Consensus 247 ~l~~~~~~l~~~~~~l~~~~~~l~~~---~i~AP~dG~V~ 283 (423)
T TIGR01843 247 ELTEAQARLAELRERLNKARDRLQRL---IIRSPVDGTVQ 283 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc---EEECCCCcEEE
Confidence 34555556666666666655555432 12345565553
No 52
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=87.42 E-value=1.2e+02 Score=40.58 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHhhccCCc
Q 001727 862 KLAECQETILNLGKQLKALASPR 884 (1020)
Q Consensus 862 KLAECQETI~nLGKQLKALa~p~ 884 (1020)
.+-....+|..|.++|+....-.
T Consensus 772 ~I~~l~~~i~~L~~~l~~ie~~r 794 (1201)
T PF12128_consen 772 RIQQLKQEIEQLEKELKRIEERR 794 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Confidence 46667778888888888776643
No 53
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.39 E-value=25 Score=44.68 Aligned_cols=97 Identities=15% Similarity=0.216 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhh----------hhhhhhHhHHHH
Q 001727 720 RLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMIEDQMENQ----------KSINEDLDTQLT 789 (1020)
Q Consensus 720 ~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~----------~~~~~~Let~L~ 789 (1020)
++|.....+...++.|....+.+..+-++++..++...++...+++-..+++.|++.. .+.+...+..+.
T Consensus 661 kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel~ 740 (970)
T KOG0946|consen 661 KYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKTQNEELN 740 (970)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHHhccCChHHHH
Confidence 4666677788889999999999999999999999999999999999999999999933 355566667777
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHhhhhh
Q 001727 790 VAKAKLNEGFQKFSSLEVELEYRNNFC 816 (1020)
Q Consensus 790 ~~e~E~~el~~Ki~sLE~ELe~e~~~~ 816 (1020)
.+..|.+.+..+-..|+.+|++..+--
T Consensus 741 a~~~e~k~l~~~q~~l~~~L~k~~~~~ 767 (970)
T KOG0946|consen 741 AALSENKKLENDQELLTKELNKKNADI 767 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 778888888877777877777665554
No 54
>PRK11637 AmiB activator; Provisional
Probab=87.08 E-value=50 Score=38.66 Aligned_cols=13 Identities=23% Similarity=0.176 Sum_probs=4.9
Q ss_pred hhHHHHHhhhhhh
Q 001727 121 PMKCVKQLNFDQA 133 (1020)
Q Consensus 121 LKeCmrQLr~~rE 133 (1020)
+++=.++++.-.+
T Consensus 45 ~~~~l~~l~~qi~ 57 (428)
T PRK11637 45 NRDQLKSIQQDIA 57 (428)
T ss_pred hHHHHHHHHHHHH
Confidence 3333333333333
No 55
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=87.05 E-value=96 Score=39.21 Aligned_cols=287 Identities=20% Similarity=0.224 Sum_probs=145.6
Q ss_pred chhhhhhHHHHHHHHHhh--cCcchHHHHHHHHHHHhhhccCcchhhHHHHHHHHhhhhcCCCCcccCCCCC--------
Q 001727 45 SERSMKNLNEQLASVIFD--CHPKDELMAKQAKLVQEAGAGQEKPEVAAAVVKKELDETLKPPLSANENLPY-------- 114 (1020)
Q Consensus 45 ~~~~~k~LnekLs~al~~--~~~Kd~lvkqhaKvaeEAv~GwEKae~E~~~lK~qLe~~~~~~~~~e~rv~h-------- 114 (1020)
+.+.+|+|.+-|+++|.- ...||..+.+-. +|.|-++-++--..++-+++-+.++-+-
T Consensus 428 lr~e~kslk~ela~~l~~DeLaEkdE~I~~lm------------~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge 495 (961)
T KOG4673|consen 428 LRREQKSLKKELAAALLKDELAEKDEIINQLM------------AEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGE 495 (961)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH------------HHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhh
Confidence 355688999999998874 445666665532 3444444433333444444444433221
Q ss_pred ----CCCCCChhHHHHHhhhhhhhhHHHHHHHHHHhhhhHHHHHHH---HHHHHHHHHHHHHHHHhhhHHhHHHHHHHHH
Q 001727 115 ----AGAATAPMKCVKQLNFDQAEQEQRVHDAVVKTSGEFEKAQKE---LEKNLREANERIAKLAAENSHLSKALLVKEK 187 (1020)
Q Consensus 115 ----ld~A~~LKeCmrQLr~~rEEqEq~i~eav~~~s~e~ek~k~e---lE~kl~e~~~~l~~~~aEn~~Ls~al~~k~~ 187 (1020)
|..- -+-++++...+||-|...+++|-+-+.+.+..+.+ +...++++..++....|-|..+-.-|+-+.+
T Consensus 496 ~i~~L~sE---~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nr 572 (961)
T KOG4673|consen 496 LITKLQSE---ENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENR 572 (961)
T ss_pred HHHHHHHH---HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhh
Confidence 2221 23467888899999999999999888777655433 3455666666665555555444333322111
Q ss_pred -----------H----HHHHHHhhhhHh-----------hHHHHHHhhhhhhHhhhhhhhhHHHHHHHHHhhhhhh---h
Q 001727 188 -----------M----IEDLSKRKSQAE-----------AEFSTLMTRLDVTEKENAFLKYEFRILEKELEIRNEE---M 238 (1020)
Q Consensus 188 -----------~----i~el~~~k~~ae-----------~e~~~l~~rLe~~eKen~sLkyE~~~l~kELeiR~~E---r 238 (1020)
+ +.+|+...+.+| -++.+||.||+..|.-|-.|-.+|-.-..=| ||.+| +
T Consensus 573 lkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPL-lRQIE~lQ~ 651 (961)
T KOG4673|consen 573 LKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQVPETTRPL-LRQIEALQE 651 (961)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHH-HHHHHHHHH
Confidence 1 344544444333 3556888888888888877766553322222 22222 2
Q ss_pred hhhhhhHHHhh--hhhhhh------hHHHHhHHH--HHHHHHHHhhhcCC-CchHHHhhHHHHHhhccchhhhhcccCCC
Q 001727 239 EYTRRSVEATH--KQHLES------VKKVAKLEA--ECERLRLLVRKKLP-GSAASAKMKSEVEMQGRDQMDMRRRKLSP 307 (1020)
Q Consensus 239 e~~~~sae~a~--KQhlEs------vKKiakLEa--ECqRLR~lvRKklP-gpAala~Mk~Eve~lg~d~~e~rrr~~~~ 307 (1020)
-++.+++---+ ++-.+- .-.|+-+++ |-|-|=.+- =-|| .|--++=|+.|-..|...--..|-| .+-
T Consensus 652 tl~~~~tawereE~~l~~rL~dSQtllr~~v~~eqgekqElL~~~-~~l~s~~~q~sllraE~~~l~~~le~e~nr-~~~ 729 (961)
T KOG4673|consen 652 TLSKAATAWEREERSLNERLSDSQTLLRINVLEEQGEKQELLSLN-FSLPSSPIQLSLLRAEQGQLSKSLEKERNR-AAE 729 (961)
T ss_pred HHhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhHHHHHHHh-cCCCcchhHHHHHHHHHHHHHHHHHHHHHH-Hhh
Confidence 22222221111 111111 112333332 223222221 1233 3556666777765543221111111 100
Q ss_pred CcccccccccCCCcch-hh-HHHHHHhhHHhHHHHHHHHhhhhhhhhHHHhhh
Q 001727 308 TRDLIVRHATTESSHD-IS-LLARLHDMEKENRTLKDIVITKSTELQASRMMF 358 (1020)
Q Consensus 308 ~~~~~~~~~~~~~~~~-~~-lt~rL~~~EeEnk~LKe~Lakkn~ELQ~sr~m~ 358 (1020)
.. .+. -..++ .. +-.|...+|.|++.+|+.+ +.+||-.++..
T Consensus 730 ~~---~e~---~~~qeE~~~l~~r~~~le~e~r~~k~~~---~q~lq~~ll~v 773 (961)
T KOG4673|consen 730 NR---QEY---LAAQEEADTLEGRANQLEVEIRELKRKH---KQELQEVLLHV 773 (961)
T ss_pred hH---HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhHHHHHH
Confidence 00 000 00111 34 7788888889999888766 45677666543
No 56
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=86.66 E-value=2.5 Score=44.31 Aligned_cols=95 Identities=29% Similarity=0.379 Sum_probs=47.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhhhhHhHHHHHHHH
Q 001727 714 LQEENRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMIEDQMENQKSINEDLDTQLTVAKA 793 (1020)
Q Consensus 714 ~~eE~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~~~Let~L~~~e~ 793 (1020)
..+|+..+.-..-.+...|...+..++.+...+.+.+..|..|+.++..++....-.+..|+...-.+..|--.+..+..
T Consensus 79 l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l 158 (194)
T PF08614_consen 79 LQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQL 158 (194)
T ss_dssp -----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666677778888888888888888888888888888888888888888888888888777777777777777
Q ss_pred HHHHhhhhhhhhHHH
Q 001727 794 KLNEGFQKFSSLEVE 808 (1020)
Q Consensus 794 E~~el~~Ki~sLE~E 808 (1020)
+.+.+..|+..|+.|
T Consensus 159 ~~~~~e~k~~~l~~E 173 (194)
T PF08614_consen 159 QLNMLEEKLRKLEEE 173 (194)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777766544
No 57
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=86.59 E-value=49 Score=41.55 Aligned_cols=134 Identities=24% Similarity=0.295 Sum_probs=81.8
Q ss_pred HHHhhhhhhHhhhhhhhhHHHHHHHHHhhhhhhhhhhhhhHHHh-------hhhhhhhhHHHHhHHHHHHHHHHHhhhcC
Q 001727 205 TLMTRLDVTEKENAFLKYEFRILEKELEIRNEEMEYTRRSVEAT-------HKQHLESVKKVAKLEAECERLRLLVRKKL 277 (1020)
Q Consensus 205 ~l~~rLe~~eKen~sLkyE~~~l~kELeiR~~Ere~~~~sae~a-------~KQhlEsvKKiakLEaECqRLR~lvRKkl 277 (1020)
.+...++...|++..|.-|=..|.-.+++|--.-+|+....-+- .|-.-.-=.++-.|.|||+|||.+++..=
T Consensus 500 ~~~e~i~~~~ke~~~Le~En~rLr~~~e~~~l~gd~~~~~~rVl~~~~npt~~~~~~~k~~~e~LqaE~~~lk~~l~~le 579 (716)
T KOG4593|consen 500 LLREKIEQYLKELELLEEENDRLRAQLERRLLQGDYEENITRVLHMSTNPTSKARQIKKNRLEELQAELERLKERLTALE 579 (716)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccceeeecCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445666677777777777777788888888888874432221 12222222356789999999999987621
Q ss_pred CCchHHHhhHHHHHhhccchhhhhcccCCCCcccccccccCCCcchhh-HHHHHHhhHHhHHHHHHHHhhhhhhhhHHHh
Q 001727 278 PGSAASAKMKSEVEMQGRDQMDMRRRKLSPTRDLIVRHATTESSHDIS-LLARLHDMEKENRTLKDIVITKSTELQASRM 356 (1020)
Q Consensus 278 PgpAala~Mk~Eve~lg~d~~e~rrr~~~~~~~~~~~~~~~~~~~~~~-lt~rL~~~EeEnk~LKe~Lakkn~ELQ~sr~ 356 (1020)
| +.+.. + .-+..+++. +..+-+.. |-.++-.+|--|..||+..+.+-.| |-+.
T Consensus 580 -~----------------~~~~~--~----d~~i~~~s~-~~~~~ev~qlk~ev~s~ekr~~rlk~vF~~ki~e--Fr~a 633 (716)
T KOG4593|consen 580 -G----------------DKMQF--R----DGEIAVHSL-LAFSKEVAQLKKEVESAEKRNQRLKEVFASKIQE--FRDA 633 (716)
T ss_pred -c----------------cCCcc--c----chhhHHhhh-hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 1 10000 0 112334443 23344545 8888899999999999999877655 4444
Q ss_pred hhhhhhhh
Q 001727 357 MFSRTASR 364 (1020)
Q Consensus 357 m~a~task 364 (1020)
.|.-.+=|
T Consensus 634 c~sL~Gyk 641 (716)
T KOG4593|consen 634 CYSLLGYK 641 (716)
T ss_pred HHhhhhhh
Confidence 55554444
No 58
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=86.37 E-value=26 Score=44.66 Aligned_cols=97 Identities=29% Similarity=0.339 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhHhhHHHHHHhhhhhhHhhhhhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhh--------
Q 001727 178 LSKALLVKEKMIEDLSKRKSQAEAEFSTLMTRLDVTEKENAFLKYEFRILEKELEIRNEEMEYTRRSVEATH-------- 249 (1020)
Q Consensus 178 Ls~al~~k~~~i~el~~~k~~ae~e~~~l~~rLe~~eKen~sLkyE~~~l~kELeiR~~Ere~~~~sae~a~-------- 249 (1020)
|-.++.+|++++..|.+.+..++.+ ....++...+++.-|+-++..++++|.=|....+..+.-|-...
T Consensus 438 lEea~~eker~~e~l~e~r~~~e~e---~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s 514 (775)
T PF10174_consen 438 LEEALREKERLQERLEEQRERAEKE---RQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDS 514 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhh
Confidence 3489999999999999887776644 56788999999999999999999999888766555443222111
Q ss_pred ---hhhhhh---hHHHHhHHHHHHHHHHHhhhcC
Q 001727 250 ---KQHLES---VKKVAKLEAECERLRLLVRKKL 277 (1020)
Q Consensus 250 ---KQhlEs---vKKiakLEaECqRLR~lvRKkl 277 (1020)
.-|++- -.|+.+|+.+..++|.-...+.
T Consensus 515 ~i~~l~I~lEk~rek~~kl~~ql~k~~~~~e~~~ 548 (775)
T PF10174_consen 515 EIERLEIELEKKREKHEKLEKQLEKLRANAELRD 548 (775)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCHhhcc
Confidence 112222 2466777777777666554444
No 59
>PRK04863 mukB cell division protein MukB; Provisional
Probab=85.69 E-value=1e+02 Score=42.26 Aligned_cols=58 Identities=24% Similarity=0.318 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHH
Q 001727 715 QEENRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMIED 772 (1020)
Q Consensus 715 ~eE~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~ 772 (1020)
.||.-+.+.++.....+|.....++..+.-.+.+.+..+..|+.+.+.+++-..+.+.
T Consensus 285 iEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee 342 (1486)
T PRK04863 285 LEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQT 342 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777787888888777777888888888888888877776666554
No 60
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=85.60 E-value=46 Score=37.03 Aligned_cols=91 Identities=29% Similarity=0.398 Sum_probs=70.5
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHhhhhHhhHHHHHHhhhhhhHhhhhhhh
Q 001727 142 AVVKTSGEFEKAQKELEKNLREANERIAKLAAENSHLSKALLVKEKMIEDLSKRKSQAEAEFSTLMTRLDVTEKENAFLK 221 (1020)
Q Consensus 142 av~~~s~e~ek~k~elE~kl~e~~~~l~~~~aEn~~Ls~al~~k~~~i~el~~~k~~ae~e~~~l~~rLe~~eKen~sLk 221 (1020)
.+..++ ..+.....|+.+..+..+-|.++.+|=+.+.+.+.++..-+.+|..+.++-+.++..+..|++..+...+.-+
T Consensus 8 ~L~~iq-~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~ 86 (239)
T COG1579 8 SLLAIQ-KLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVK 86 (239)
T ss_pred HHHHHH-HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344443 6667777888889999999999999999999999999999999999999999999999999887765543332
Q ss_pred --hHHHHHHHHHhh
Q 001727 222 --YEFRILEKELEI 233 (1020)
Q Consensus 222 --yE~~~l~kELei 233 (1020)
-|+..|..|+.+
T Consensus 87 ~~~e~~aL~~E~~~ 100 (239)
T COG1579 87 DERELRALNIEIQI 100 (239)
T ss_pred cHHHHHHHHHHHHH
Confidence 234444444443
No 61
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=85.46 E-value=52 Score=39.74 Aligned_cols=17 Identities=41% Similarity=0.559 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHH
Q 001727 178 LSKALLVKEKMIEDLSK 194 (1020)
Q Consensus 178 Ls~al~~k~~~i~el~~ 194 (1020)
-.++|+.|+++|..|++
T Consensus 244 A~~iLq~kEklI~~LK~ 260 (511)
T PF09787_consen 244 AQRILQSKEKLIESLKE 260 (511)
T ss_pred HHHHhcCHHHHHHHHHh
Confidence 46788999999999988
No 62
>PHA02562 46 endonuclease subunit; Provisional
Probab=85.31 E-value=42 Score=39.96 Aligned_cols=74 Identities=16% Similarity=0.123 Sum_probs=38.3
Q ss_pred HHHHhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCccccccchhhhHHHHhhhHHHHHHHHHHH
Q 001727 794 KLNEGFQKFSSLEVELEYRNNFCEELEATCLELQLQLESVAKREPPSYGVNQGEKQSQNGWEMTAASIKLAECQETILNL 873 (1020)
Q Consensus 794 E~~el~~Ki~sLE~ELe~e~~~~eEl~AkC~ELqeQLer~~~~~~~~~~~~~e~~~~k~e~EIaaAAeKLAECQETI~nL 873 (1020)
+.+++..++..|+.++...+...+++..+-..|+.++++.... ....+.+|.....+|-+=+..+..+
T Consensus 331 ~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~------------~~~~~~~l~~l~~~l~~~~~~~~~~ 398 (562)
T PHA02562 331 EFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAE------------FVDNAEELAKLQDELDKIVKTKSEL 398 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------hhchHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555555555666666665531 1112344555566666666666666
Q ss_pred HHHHhh
Q 001727 874 GKQLKA 879 (1020)
Q Consensus 874 GKQLKA 879 (1020)
-+....
T Consensus 399 ~ke~~~ 404 (562)
T PHA02562 399 VKEKYH 404 (562)
T ss_pred HHHHHH
Confidence 555543
No 63
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=85.24 E-value=6.8 Score=35.87 Aligned_cols=69 Identities=33% Similarity=0.406 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHhhhhHhhHHHHHHhhhhhhHhhhhhhhhHH
Q 001727 156 ELEKNLREANERIAKLAAENSHLSKALLVKEKMIEDLSKRKSQAEAEFSTLMTRLDVTEKENAFLKYEF 224 (1020)
Q Consensus 156 elE~kl~e~~~~l~~~~aEn~~Ls~al~~k~~~i~el~~~k~~ae~e~~~l~~rLe~~eKen~sLkyE~ 224 (1020)
.|+.+|.|-..+++.+-.|-..||+.-..-.+.|..|+..-...+..+..+..+++..+++...|+--+
T Consensus 2 sl~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 2 SLEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 478889999999999999999999999999999999999999999999999999999999998887544
No 64
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=85.23 E-value=33 Score=37.08 Aligned_cols=110 Identities=25% Similarity=0.306 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhhhhHhHHHHHH---
Q 001727 715 QEENRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMIEDQMENQKSINEDLDTQLTVA--- 791 (1020)
Q Consensus 715 ~eE~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~~~Let~L~~~--- 791 (1020)
.+|++.||.-...|| +....+..|...+|...+.|-+++.++++-|..+-...+..+--+..|-+.-..+
T Consensus 66 ~eEledLk~~~~~lE-------E~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Q 138 (193)
T PF14662_consen 66 EEELEDLKTLAKSLE-------EENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQ 138 (193)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHH
Confidence 456666666655554 4456677888889999999999999999888877766666654444443322222
Q ss_pred -----------HHHHHHhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHhh
Q 001727 792 -----------KAKLNEGFQKFSSLEVELEYRNNFCEELEATCLELQLQLE 831 (1020)
Q Consensus 792 -----------e~E~~el~~Ki~sLE~ELe~e~~~~eEl~AkC~ELqeQLe 831 (1020)
++.+++--++|..|..-|+.=+.--+++-+.--.|++||.
T Consensus 139 l~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql~ 189 (193)
T PF14662_consen 139 LCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQLS 189 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777788888888888888888888888888888884
No 65
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.06 E-value=1.6e+02 Score=39.77 Aligned_cols=94 Identities=11% Similarity=0.078 Sum_probs=48.6
Q ss_pred hhHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCccccccchhhhHHHHhh
Q 001727 782 EDLDTQLTVAKAKLNEGFQKFSSLEVELEYRNNFCEELEATCLELQLQLESVAKREPPSYGVNQGEKQSQNGWEMTAASI 861 (1020)
Q Consensus 782 ~~Let~L~~~e~E~~el~~Ki~sLE~ELe~e~~~~eEl~AkC~ELqeQLer~~~~~~~~~~~~~e~~~~k~e~EIaaAAe 861 (1020)
..|+.++...+.+++.+..++..|-.+.++...-..++..+..++..+...... ......+=+.+|..-.+
T Consensus 825 ~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~---------~l~~r~~le~~L~el~~ 895 (1311)
T TIGR00606 825 QQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGT---------NLQRRQQFEEQLVELST 895 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Confidence 345555555555566665555555555555555555554444444433333321 11111222334555566
Q ss_pred hHHHHHHHHHHHHHHHhhccCCc
Q 001727 862 KLAECQETILNLGKQLKALASPR 884 (1020)
Q Consensus 862 KLAECQETI~nLGKQLKALa~p~ 884 (1020)
.+.+|.+.|.-+-.+|..|.+.-
T Consensus 896 el~~l~~~~~~~~~~~~~~~~~~ 918 (1311)
T TIGR00606 896 EVQSLIREIKDAKEQDSPLETFL 918 (1311)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHH
Confidence 66777777777777666665543
No 66
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=85.01 E-value=50 Score=41.14 Aligned_cols=110 Identities=24% Similarity=0.275 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHhhhhcCCcccHHHHHHHHHHHHHHHHhhhccccchhhhHHHHhhhcCCcccccccccccccccccccCc
Q 001727 627 LHAVLQKFVCACNDLLGGKADLDKFAEELSSALDWIMNNCIAHKDASRARNKVKKHFGLLVESNEVHIPEEQSSASLQGQ 706 (1020)
Q Consensus 627 L~~~Le~f~~~C~dvL~gka~le~f~~EL~~~L~wi~n~~~s~~d~s~~~d~i~k~f~~~~~~dkv~l~e~k~~c~~~~~ 706 (1020)
+..++.+++.-|+-|..-|......|.||..-|..+-+.--... .. ..+
T Consensus 27 ~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~--------------~~-----------------~~p 75 (617)
T PF15070_consen 27 WQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPP--------------PP-----------------EPP 75 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC--------------Cc-----------------ccc
Confidence 67788888888888888899999999999988775444321000 00 001
Q ss_pred ccc--cccccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhH
Q 001727 707 NVL--SQSNLQEENRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESK 767 (1020)
Q Consensus 707 ~~~--~q~~~~eE~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~ 767 (1020)
..+ ..-....|++.|+.++..|+..++.-..+.+.+..-..+.+..|.+|+..+..+++..
T Consensus 76 a~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~ 138 (617)
T PF15070_consen 76 AGPSEVEQQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQ 138 (617)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1122457888999999999999987777777775555788888888887777655543
No 67
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=84.67 E-value=27 Score=37.86 Aligned_cols=159 Identities=23% Similarity=0.247 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHH-------HHHHHhHHHHHHHhhhhhhhhhhHhHHHH
Q 001727 717 ENRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEV-------KALKESKEMIEDQMENQKSINEDLDTQLT 789 (1020)
Q Consensus 717 E~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL-------~~~keS~~l~E~Qle~~~~~~~~Let~L~ 789 (1020)
++..|+.+.-.|+..+-++++.+.+...+|.+.++.-.+-.-.. .-+.+-....+.||+.-+.+-+.-
T Consensus 5 ~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~a----- 79 (205)
T KOG1003|consen 5 DVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKA----- 79 (205)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-----
Confidence 56677777888888888888888888888888887554322222 223333334444444433322221
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCccccc----cchhhhHHHHhhhHHH
Q 001727 790 VAKAKLNEGFQKFSSLEVELEYRNNFCEELEATCLELQLQLESVAKREPPSYGVNQGEKQ----SQNGWEMTAASIKLAE 865 (1020)
Q Consensus 790 ~~e~E~~el~~Ki~sLE~ELe~e~~~~eEl~AkC~ELqeQLer~~~~~~~~~~~~~e~~~----~k~e~EIaaAAeKLAE 865 (1020)
..+.++...|+--+|.+|+.--...+-.+.+|.+|.+++.-+.+. ..+....+++- -.-+.+|-..++||-|
T Consensus 80 --drK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~n--lk~l~~~ee~~~q~~d~~e~~ik~ltdKLkE 155 (205)
T KOG1003|consen 80 --DRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSN--LKSLSAKEEKLEQKEEKYEEELKELTDKLKE 155 (205)
T ss_pred --HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhH--HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence 234556666677777777776666667778999999998765431 00111111111 1224566777788877
Q ss_pred HHHHHHHHHHHHhhccCCc
Q 001727 866 CQETILNLGKQLKALASPR 884 (1020)
Q Consensus 866 CQETI~nLGKQLKALa~p~ 884 (1020)
------..+|..++|.-+.
T Consensus 156 aE~rAE~aERsVakLeke~ 174 (205)
T KOG1003|consen 156 AETRAEFAERRVAKLEKER 174 (205)
T ss_pred hhhhHHHHHHHHHHHcccH
Confidence 7666666777777776554
No 68
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=84.59 E-value=1.5e+02 Score=39.20 Aligned_cols=61 Identities=13% Similarity=0.225 Sum_probs=45.8
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHH
Q 001727 710 SQSNLQEENRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMI 770 (1020)
Q Consensus 710 ~q~~~~eE~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~ 770 (1020)
.+.....+|+.|+.+..+++..+..|....-..+..+.+.+..+..|+.++...+.-....
T Consensus 655 ~~~s~d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~ 715 (1074)
T KOG0250|consen 655 DEFSFDDEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKK 715 (1074)
T ss_pred cchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666778999999999888888888887777777777777777777777776555544433
No 69
>PRK04863 mukB cell division protein MukB; Provisional
Probab=84.16 E-value=1.2e+02 Score=41.77 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=17.6
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHhhccC
Q 001727 856 MTAASIKLAECQETILNLGKQLKALAS 882 (1020)
Q Consensus 856 IaaAAeKLAECQETI~nLGKQLKALa~ 882 (1020)
+.--..++++.+..+..|-.+|-.+..
T Consensus 444 LenF~aklee~e~qL~elE~kL~~lea 470 (1486)
T PRK04863 444 LEEFQAKEQEATEELLSLEQKLSVAQA 470 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555667777777777777766655543
No 70
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=83.50 E-value=1.1e+02 Score=36.58 Aligned_cols=116 Identities=15% Similarity=0.167 Sum_probs=71.9
Q ss_pred hhhhhhHHHHHHHHHhhcCcchHHHHHHHH-HHHhhh---ccCc----------chhhHHHHHHHHhhhhcCCCCcccC-
Q 001727 46 ERSMKNLNEQLASVIFDCHPKDELMAKQAK-LVQEAG---AGQE----------KPEVAAAVVKKELDETLKPPLSANE- 110 (1020)
Q Consensus 46 ~~~~k~LnekLs~al~~~~~Kd~lvkqhaK-vaeEAv---~GwE----------Kae~E~~~lK~qLe~~~~~~~~~e~- 110 (1020)
++..+.|.|-.+.-+-+. +++.--|-| |.--|. +.|+ --+.||-+|..|||+-..+.-+.+-
T Consensus 244 Edq~~~LsE~~~k~~q~L---e~~~~~~~~~~P~t~~~~~~~~e~~~~~sD~~~~L~k~vQ~L~AQle~~R~q~e~~q~~ 320 (593)
T KOG4807|consen 244 EDQQNRLSEEIEKKWQEL---EKLPLRENKRVPLTALLNQSRGERRGPPSDGHEALEKEVQALRAQLEAWRLQGEAPQSA 320 (593)
T ss_pred HHHHHHHHHHHHHHHHHH---HhhhhhhcCCCCccccCCCccccccCCCCcchHHHHHHHHHHHHHHHHHHHhccCchhh
Confidence 777888888887776655 233333332 222222 3444 4578999999999988776644332
Q ss_pred ----CCCCCCCCCChh-HHHHHhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 001727 111 ----NLPYAGAATAPM-KCVKQLNFDQAEQEQRVHDAVVKTSGEFEKAQKELEKNLREA 164 (1020)
Q Consensus 111 ----rv~hld~A~~LK-eCmrQLr~~rEEqEq~i~eav~~~s~e~ek~k~elE~kl~e~ 164 (1020)
|-.|.--...++ -|-|-+--..+-+-++|.|.-..--+|+++++.+-+.=|+|-
T Consensus 321 ~~s~~d~~~~~~~~~qatCERgfAaMEetHQkkiEdLQRqHqRELekLreEKdrLLAEE 379 (593)
T KOG4807|consen 321 LRSQEDGHIPPGYISQATCERGFAAMEETHQKKIEDLQRQHQRELEKLREEKDRLLAEE 379 (593)
T ss_pred HhhhhhccCCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 222321111233 477777767777777888877777788888887666666553
No 71
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=83.48 E-value=0.35 Score=61.07 Aligned_cols=173 Identities=27% Similarity=0.326 Sum_probs=0.0
Q ss_pred cchhhhhhHHHHHHHHHhhcCcchHHHHHHHHHHHhhhccCcchhhHHHHHHHHhhhhcCC--CCcccCCCCCCCCCCCh
Q 001727 44 GSERSMKNLNEQLASVIFDCHPKDELMAKQAKLVQEAGAGQEKPEVAAAVVKKELDETLKP--PLSANENLPYAGAATAP 121 (1020)
Q Consensus 44 ~~~~~~k~LnekLs~al~~~~~Kd~lvkqhaKvaeEAv~GwEKae~E~~~lK~qLe~~~~~--~~~~e~rv~hld~A~~L 121 (1020)
++.+.+-.|++.|-.+.....+--++-+ |=|+|+..||.+|+++... ....+=|-.|.|+-..|
T Consensus 71 dL~~ELe~l~~~Lee~~~~t~aq~E~~k--------------krE~El~~Lrr~LEe~~~~~e~~~~~lrkkh~~~~~eL 136 (859)
T PF01576_consen 71 DLSEELEELKERLEEAGGATQAQIELNK--------------KREAELAKLRRDLEEANLQHEATLAELRKKHQDAVAEL 136 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhhCcHHhhHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4455566666666655555443333333 4578999999999876554 33456699999998889
Q ss_pred hHHHHHhhhhhhhhHHH-------H------HHHHHHhhhhHHHHHHHHHHHHHHHHHHH--------------HHHHhh
Q 001727 122 MKCVKQLNFDQAEQEQR-------V------HDAVVKTSGEFEKAQKELEKNLREANERI--------------AKLAAE 174 (1020)
Q Consensus 122 KeCmrQLr~~rEEqEq~-------i------~eav~~~s~e~ek~k~elE~kl~e~~~~l--------------~~~~aE 174 (1020)
.+=+.+|..++..-|.- + .+.+.+.-...++....||..|.++..++ .++.+|
T Consensus 137 ~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E 216 (859)
T PF01576_consen 137 NEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSE 216 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888888777544421 1 12223333444565566666666665543 234444
Q ss_pred hHHhHHHHHHHHHHHHHHHHhhhhHhhHHHHHHhhhhhhHhhhhhhhhHHHHHHHH
Q 001727 175 NSHLSKALLVKEKMIEDLSKRKSQAEAEFSTLMTRLDVTEKENAFLKYEFRILEKE 230 (1020)
Q Consensus 175 n~~Ls~al~~k~~~i~el~~~k~~ae~e~~~l~~rLe~~eKen~sLkyE~~~l~kE 230 (1020)
|..|.+.|.+-+..+..|...++..++.+.+++..|+.--+....|...++.+..|
T Consensus 217 ~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e 272 (859)
T PF01576_consen 217 NSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHE 272 (859)
T ss_dssp --------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444443333333333
No 72
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=83.19 E-value=39 Score=34.92 Aligned_cols=49 Identities=14% Similarity=0.392 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhhhhHhHHHHHHH
Q 001727 744 TQLHESEEQIGNLETEVKALKESKEMIEDQMENQKSINEDLDTQLTVAK 792 (1020)
Q Consensus 744 ~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~~~Let~L~~~e 792 (1020)
.++.+.+..+..++.......+-....+..+..-...+..+......+.
T Consensus 102 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 102 ERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333344444443333333433333333
No 73
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=83.02 E-value=41 Score=42.56 Aligned_cols=164 Identities=18% Similarity=0.194 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHh--hhhh--------------
Q 001727 715 QEENRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMIEDQM--ENQK-------------- 778 (1020)
Q Consensus 715 ~eE~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Ql--e~~~-------------- 778 (1020)
..++.+++-||..|-..|+.++.+++.++.-|.+....|..|...+.++..-....+.+- .+.+
T Consensus 271 ~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~~~~~s~~d~~~ye~D 350 (717)
T PF09730_consen 271 KQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSEKERDSHEDGDYYEVD 350 (717)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhcccccccccccchhhhc
Confidence 455666777888888999999999999999999999999999999998887433222211 1000
Q ss_pred -hhhhhHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhHHH----HHHHHHHHHHhhhhccCCCCCCC---CCccccc-
Q 001727 779 -SINEDLDTQLTVAKAKLNEGFQKFSSLEVELEYRNNFCEEL----EATCLELQLQLESVAKREPPSYG---VNQGEKQ- 849 (1020)
Q Consensus 779 -~~~~~Let~L~~~e~E~~el~~Ki~sLE~ELe~e~~~~eEl----~AkC~ELqeQLer~~~~~~~~~~---~~~e~~~- 849 (1020)
...+-|+.++.++..|+..+...+..|..++..-...|.+. .+...+|..++.+..+...+... .-+.+.+
T Consensus 351 i~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~ 430 (717)
T PF09730_consen 351 INGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRA 430 (717)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 01133445555555555555555555544443333333333 33457777777766541111100 0000000
Q ss_pred -----cchhhhHHHHhhhHHHHHHHHHHHHHHHh
Q 001727 850 -----SQNGWEMTAASIKLAECQETILNLGKQLK 878 (1020)
Q Consensus 850 -----~k~e~EIaaAAeKLAECQETI~nLGKQLK 878 (1020)
-....-|.+|-+=|..+.+.|++|-.++=
T Consensus 431 l~~~A~E~q~~LnsAQDELvtfSEeLAqLYHHVC 464 (717)
T PF09730_consen 431 LSKLAGESQGSLNSAQDELVTFSEELAQLYHHVC 464 (717)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01112356666777777777777777764
No 74
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=82.97 E-value=42 Score=36.32 Aligned_cols=77 Identities=19% Similarity=0.276 Sum_probs=39.3
Q ss_pred hhHHHHHhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHhhh
Q 001727 121 PMKCVKQLNFDQAEQEQRVHDAVVKTSGEFEKAQKELEKNLREANERIAKLAAENSHLSKALLVKEKMIEDLSKRKS 197 (1020)
Q Consensus 121 LKeCmrQLr~~rEEqEq~i~eav~~~s~e~ek~k~elE~kl~e~~~~l~~~~aEn~~Ls~al~~k~~~i~el~~~k~ 197 (1020)
++.++.+++..++.-.++|.+++......-......+..++.+...++..+......+.+.+..+.+-|.+++....
T Consensus 25 ~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~ 101 (302)
T PF10186_consen 25 LRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLE 101 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888888888888877622211111111233344444444444444444444444444444444443333
No 75
>PRK09039 hypothetical protein; Validated
Probab=82.93 E-value=25 Score=40.42 Aligned_cols=46 Identities=20% Similarity=0.174 Sum_probs=26.5
Q ss_pred hhhHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhh-hHHHHHHHHHH
Q 001727 781 NEDLDTQLTVAKAKLNEGFQKFSSLEVELEYRNNF-CEELEATCLEL 826 (1020)
Q Consensus 781 ~~~Let~L~~~e~E~~el~~Ki~sLE~ELe~e~~~-~eEl~AkC~EL 826 (1020)
-..|+..|..++....+...+|..|+.+|+.-.+. -.++..-+.++
T Consensus 153 la~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~ 199 (343)
T PRK09039 153 LAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEF 199 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 44566666666666666666677776666665544 44443333333
No 76
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=82.28 E-value=35 Score=39.76 Aligned_cols=115 Identities=24% Similarity=0.260 Sum_probs=84.6
Q ss_pred hhHHHHHhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHH----------
Q 001727 121 PMKCVKQLNFDQAEQEQRVHDAVVKTSGEFEKAQKELEKNLREANERIAKLAAENSHLSKALLVKEKMIE---------- 190 (1020)
Q Consensus 121 LKeCmrQLr~~rEEqEq~i~eav~~~s~e~ek~k~elE~kl~e~~~~l~~~~aEn~~Ls~al~~k~~~i~---------- 190 (1020)
+..|+.|.+.--..|-.+...|+.+...|...++.+||.++.++..++.....+-..|-+++..|+.-+.
T Consensus 227 i~~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~ 306 (384)
T PF03148_consen 227 IDSILEQTANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRT 306 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHh
Confidence 4455556666666777888999999999999999999999999999999999999999999998887653
Q ss_pred --------------HHHHhhhhHhhHHHHHHhhhhhhHhhhhhhhhHHHHHHHHHhhhh
Q 001727 191 --------------DLSKRKSQAEAEFSTLMTRLDVTEKENAFLKYEFRILEKELEIRN 235 (1020)
Q Consensus 191 --------------el~~~k~~ae~e~~~l~~rLe~~eKen~sLkyE~~~l~kELeiR~ 235 (1020)
-|..+-.+...-+..|+.+|..++.....|..-...|+++|.+.+
T Consensus 307 ~RP~vElcrD~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~~K~ 365 (384)
T PF03148_consen 307 QRPNVELCRDPPQYGLIEEVKELRESIEALQEKLDEAEASLQKLERTRLRLEEDIAVKN 365 (384)
T ss_pred cCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223333444444556666666666666666666666666665543
No 77
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=82.25 E-value=1e+02 Score=35.54 Aligned_cols=201 Identities=18% Similarity=0.248 Sum_probs=122.1
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHhhhh------Hh---------------h
Q 001727 143 VVKTSGEFEKAQKELEKNLREANERIAKLAAENSHLSKALLVKEKMIEDLSKRKSQ------AE---------------A 201 (1020)
Q Consensus 143 v~~~s~e~ek~k~elE~kl~e~~~~l~~~~aEn~~Ls~al~~k~~~i~el~~~k~~------ae---------------~ 201 (1020)
.+++-+..-+-...|..+...+.+.|..+......|.+-|..|+.++.=.+..-.. .. .
T Consensus 81 aA~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~ 160 (306)
T PF04849_consen 81 AARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCI 160 (306)
T ss_pred HHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccch
Confidence 33445555555567777888888888888888899999999999998766522211 11 2
Q ss_pred HHHHHHhhhhhhHhhhhhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhhhhhhhhhHHHHhHHHHHHHHHHHhhhcCCCch
Q 001727 202 EFSTLMTRLDVTEKENAFLKYEFRILEKELEIRNEEMEYTRRSVEATHKQHLESVKKVAKLEAECERLRLLVRKKLPGSA 281 (1020)
Q Consensus 202 e~~~l~~rLe~~eKen~sLkyE~~~l~kELeiR~~Ere~~~~sae~a~KQhlEsvKKiakLEaECqRLR~lvRKklPgpA 281 (1020)
.+..|+.+|..+|-||..|+-|..-|..|-. +-|.. ..+=+.-.-+|-.+.-.+|+-|..|.- ||. -
T Consensus 161 ~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~--~~Eek-EqqLv~dcv~QL~~An~qia~LseELa------~k~----E 227 (306)
T PF04849_consen 161 QLEALQEKLKSLEEENEQLRSEASQLKTETD--TYEEK-EQQLVLDCVKQLSEANQQIASLSEELA------RKT----E 227 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHh--hccHH-HHHHHHHHHHHhhhcchhHHHHHHHHH------HHH----H
Confidence 3578999999999999999999999887755 32222 122233355666666667777766642 221 1
Q ss_pred HHHhhHHHHHhhccchhhhhcccCCCCcccccccccCCCcchhh-HHHHHHhhHHhHHHHHHHHhhhhhhhhHHHhhhhh
Q 001727 282 ASAKMKSEVEMQGRDQMDMRRRKLSPTRDLIVRHATTESSHDIS-LLARLHDMEKENRTLKDIVITKSTELQASRMMFSR 360 (1020)
Q Consensus 282 ala~Mk~Eve~lg~d~~e~rrr~~~~~~~~~~~~~~~~~~~~~~-lt~rL~~~EeEnk~LKe~Lakkn~ELQ~sr~m~a~ 360 (1020)
-...+..||-+|-...++.-+|-- .+ ..+.. |.-+|.+. |++=..=.+||+--+-.|+.
T Consensus 228 e~~rQQEEIt~LlsqivdlQ~r~k----~~---------~~EnEeL~q~L~~s-------ke~Q~~L~aEL~elqdkY~E 287 (306)
T PF04849_consen 228 ENRRQQEEITSLLSQIVDLQQRCK----QL---------AAENEELQQHLQAS-------KESQRQLQAELQELQDKYAE 287 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HH---------hhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 223444555554333333222100 00 01122 44444443 22222235677777888988
Q ss_pred hhhhhhHHHHHHHHhh
Q 001727 361 TASRLSYVESQLREIC 376 (1020)
Q Consensus 361 taskLs~le~ql~~ls 376 (1020)
..+=|--.+.+++.+.
T Consensus 288 ~~~mL~EaQEElk~lR 303 (306)
T PF04849_consen 288 CMAMLHEAQEELKTLR 303 (306)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 8888877777777654
No 78
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=82.15 E-value=16 Score=43.15 Aligned_cols=112 Identities=21% Similarity=0.215 Sum_probs=78.0
Q ss_pred HHHhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHhhhhHhhHHH
Q 001727 125 VKQLNFDQAEQEQRVHDAVVKTSGEFEKAQKELEKNLREANERIAKLAAENSHLSKALLVKEKMIEDLSKRKSQAEAEFS 204 (1020)
Q Consensus 125 mrQLr~~rEEqEq~i~eav~~~s~e~ek~k~elE~kl~e~~~~l~~~~aEn~~Ls~al~~k~~~i~el~~~k~~ae~e~~ 204 (1020)
|++|-.-+-+.+|++.++=.+. . ..|.+...+..++..+.||..++..-++.|+..|.+|+++-.+...+
T Consensus 1 m~~~~s~~s~~dqr~~~~~~~l-a-------q~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~-- 70 (459)
T KOG0288|consen 1 MAPLYSQKSENDQRLIDLNTEL-A-------QCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEE-- 70 (459)
T ss_pred CchhhhhhhhhhhHHHHHHHHH-H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 4556666677788887776553 2 34444566677778889999999999999999999999887665444
Q ss_pred HHHhhhhhhHhhhhhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhhh
Q 001727 205 TLMTRLDVTEKENAFLKYEFRILEKELEIRNEEMEYTRRSVEATHK 250 (1020)
Q Consensus 205 ~l~~rLe~~eKen~sLkyE~~~l~kELeiR~~Ere~~~~sae~a~K 250 (1020)
.++.+.+++ .-++-+...-.+++..-|++|++..|.||..++
T Consensus 71 --~v~~~a~~~--~~t~~~~~~en~~~r~~~eir~~~~q~~e~~n~ 112 (459)
T KOG0288|consen 71 --RVREEATEK--TLTVDVLIAENLRIRSLNEIRELREQKAEFENA 112 (459)
T ss_pred --HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 333444433 334556666666777778888888888877654
No 79
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=82.00 E-value=31 Score=41.13 Aligned_cols=70 Identities=17% Similarity=0.290 Sum_probs=40.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhh
Q 001727 746 LHESEEQIGNLETEVKALKESKEMIEDQMENQKSINEDLDTQLTVAKAKLNEGFQKFSSLEVELEYRNNF 815 (1020)
Q Consensus 746 l~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~~~Let~L~~~e~E~~el~~Ki~sLE~ELe~e~~~ 815 (1020)
+....+.|+.+.+.+...++..+.++.+|+.+..-..+++.++..+..++..+.++|..++..|+.-...
T Consensus 40 l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q 109 (420)
T COG4942 40 LKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQ 109 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence 3344444444444444444444455566666665556666677777777777777777666666554443
No 80
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=81.80 E-value=1.4e+02 Score=39.50 Aligned_cols=42 Identities=14% Similarity=0.406 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHH
Q 001727 722 RDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKAL 763 (1020)
Q Consensus 722 k~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~ 763 (1020)
..+....+.++..|+++++.......++.+.+.+.+.++..+
T Consensus 287 ~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~ 328 (1074)
T KOG0250|consen 287 EEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGEL 328 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 333344444455555555555555555555555555555433
No 81
>PRK10884 SH3 domain-containing protein; Provisional
Probab=81.73 E-value=9.7 Score=41.05 Aligned_cols=31 Identities=16% Similarity=0.365 Sum_probs=14.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 001727 146 TSGEFEKAQKELEKNLREANERIAKLAAENS 176 (1020)
Q Consensus 146 ~s~e~ek~k~elE~kl~e~~~~l~~~~aEn~ 176 (1020)
...+|.....+|+.++...++.+.++..+|.
T Consensus 112 ~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~ 142 (206)
T PRK10884 112 IDNTWNQRTAEMQQKVAQSDSVINGLKEENQ 142 (206)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555444444444444444
No 82
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=81.66 E-value=25 Score=43.06 Aligned_cols=78 Identities=28% Similarity=0.442 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhhhhHhHHHHHHH
Q 001727 715 QEENRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMIEDQMENQKSINEDLDTQLTVAK 792 (1020)
Q Consensus 715 ~eE~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~~~Let~L~~~e 792 (1020)
.-+|.+|+.+++++.-++.++.........++.+.+..|..+++++..++--...+|+.+..-+--+..|..+|..+.
T Consensus 112 e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 112 EIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 457778888888888888888777777788888888889999999999888888888888777766655655555553
No 83
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=81.46 E-value=19 Score=45.60 Aligned_cols=95 Identities=22% Similarity=0.316 Sum_probs=79.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHhhhhHhhHHHHHHhhhhhhHhhhhhhhhHHHHH
Q 001727 148 GEFEKAQKELEKNLREANERIAKLAAENSHLSKALLVKEKMIEDLSKRKSQAEAEFSTLMTRLDVTEKENAFLKYEFRIL 227 (1020)
Q Consensus 148 ~e~ek~k~elE~kl~e~~~~l~~~~aEn~~Ls~al~~k~~~i~el~~~k~~ae~e~~~l~~rLe~~eKen~sLkyE~~~l 227 (1020)
.+.|--..+++.+|.+++.++.++..|-..|-. .|.-+.+.+-+++.+++.+.+||.-.+++.++-..|+.+.
T Consensus 95 ~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~-------ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~ 167 (1265)
T KOG0976|consen 95 NLLEDDLKHHESQIRILQNKCLRLEMEKQKLQD-------TIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMI 167 (1265)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHH
Confidence 455566668899999999988888888776544 4567788889999999999999999999999999999999
Q ss_pred HHHHh-----hhhhhhhhhhhhHHHhh
Q 001727 228 EKELE-----IRNEEMEYTRRSVEATH 249 (1020)
Q Consensus 228 ~kELe-----iR~~Ere~~~~sae~a~ 249 (1020)
-++|- |-.-+.+|.++-+|+++
T Consensus 168 ~~~L~nk~~~lt~~~~q~~tkl~e~~~ 194 (1265)
T KOG0976|consen 168 GEDLHDKNEELNEFNMEFQTKLAEANR 194 (1265)
T ss_pred HHHHhhhhhHHhHHHHHHHHHHHHHHH
Confidence 99985 44456788888888875
No 84
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.14 E-value=1e+02 Score=34.86 Aligned_cols=147 Identities=24% Similarity=0.284 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhH-----------HHHHHHhhhhh-----h
Q 001727 716 EENRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESK-----------EMIEDQMENQK-----S 779 (1020)
Q Consensus 716 eE~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~-----------~l~E~Qle~~~-----~ 779 (1020)
.+|..+..++.+++.+|.+-..+++.+..+..+....|..+++++..++.-- ..+..++..|- .
T Consensus 38 s~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG~~t 117 (265)
T COG3883 38 SKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVNGTAT 117 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChh
Confidence 4555666666666666666666666665555555555555544444433332 33333333322 1
Q ss_pred hh----------hhHhHHHHHH--------------HHHHHHhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHhhhhcc
Q 001727 780 IN----------EDLDTQLTVA--------------KAKLNEGFQKFSSLEVELEYRNNFCEELEATCLELQLQLESVAK 835 (1020)
Q Consensus 780 ~~----------~~Let~L~~~--------------e~E~~el~~Ki~sLE~ELe~e~~~~eEl~AkC~ELqeQLer~~~ 835 (1020)
.| .++.+|++++ +.+...+..+=..|+.+++. +.+=-.+|+.++..+..
T Consensus 118 ~Yidvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~-------l~al~~e~e~~~~~L~~ 190 (265)
T COG3883 118 SYIDVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLET-------LVALQNELETQLNSLNS 190 (265)
T ss_pred HHHHHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 11 4566666655 22222222223333333333 23333344444443332
Q ss_pred CCCCCCCCCccccccchhhhHHHHhhhHHHHHHHHHHHHHHHhhccC
Q 001727 836 REPPSYGVNQGEKQSQNGWEMTAASIKLAECQETILNLGKQLKALAS 882 (1020)
Q Consensus 836 ~~~~~~~~~~e~~~~k~e~EIaaAAeKLAECQETI~nLGKQLKALa~ 882 (1020)
.+-.++.=|+.++-+.|.-+.-+..|-+|. +++.
T Consensus 191 ------------qk~e~~~l~~~~aa~~a~~~~e~a~l~~qk-a~a~ 224 (265)
T COG3883 191 ------------QKAEKNALIAALAAKEASALGEKAALEEQK-ALAE 224 (265)
T ss_pred ------------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHH
Confidence 344455667888888888888888888665 5544
No 85
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=80.76 E-value=98 Score=34.33 Aligned_cols=52 Identities=15% Similarity=0.201 Sum_probs=24.2
Q ss_pred hhhhHHHHHHHHHhhcCcchHHHHHHHHHHHhhhccCcchhhHHHHHHHHhh
Q 001727 48 SMKNLNEQLASVIFDCHPKDELMAKQAKLVQEAGAGQEKPEVAAAVVKKELD 99 (1020)
Q Consensus 48 ~~k~LnekLs~al~~~~~Kd~lvkqhaKvaeEAv~GwEKae~E~~~lK~qLe 99 (1020)
.+..+..|+......+..=+.-+..--|..+++...--..++++.+|+.+|+
T Consensus 83 e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~ 134 (312)
T PF00038_consen 83 ELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELE 134 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHH
Confidence 3444444444443333332333333335555555555555555555555544
No 86
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=80.68 E-value=31 Score=41.33 Aligned_cols=19 Identities=21% Similarity=0.160 Sum_probs=11.1
Q ss_pred hhhHHHHHHHHHHHHHhhh
Q 001727 814 NFCEELEATCLELQLQLES 832 (1020)
Q Consensus 814 ~~~eEl~AkC~ELqeQLer 832 (1020)
..+.....+-.+||+||--
T Consensus 428 ~~~~s~d~~I~dLqEQlrD 446 (493)
T KOG0804|consen 428 EALGSKDEKITDLQEQLRD 446 (493)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3333444566777777764
No 87
>PRK03918 chromosome segregation protein; Provisional
Probab=80.49 E-value=1.7e+02 Score=36.99 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=7.3
Q ss_pred HHHHhHHHHHHHHHHH
Q 001727 257 KKVAKLEAECERLRLL 272 (1020)
Q Consensus 257 KKiakLEaECqRLR~l 272 (1020)
+.+..+++.+.++..+
T Consensus 283 ~~~~~l~~~~~~~~~l 298 (880)
T PRK03918 283 KELKELKEKAEEYIKL 298 (880)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344455545444433
No 88
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=80.02 E-value=59 Score=35.43 Aligned_cols=91 Identities=29% Similarity=0.363 Sum_probs=64.0
Q ss_pred hhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhh----hhhhhHhHHHHHHHHHHHHhhhhhhhhHHHHHHh
Q 001727 737 DRSEALVTQLHESEEQIGNLETEVKALKESKEMIEDQMENQK----SINEDLDTQLTVAKAKLNEGFQKFSSLEVELEYR 812 (1020)
Q Consensus 737 ~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~----~~~~~Let~L~~~e~E~~el~~Ki~sLE~ELe~e 812 (1020)
.+=+.++.-.++....|...+....+++. -++++|..-. ...+.....+..+.+.+....-++.||+..|+.+
T Consensus 111 ~NEE~Lkk~~~ey~~~l~~~eqry~aLK~---hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK 187 (207)
T PF05010_consen 111 KNEETLKKCIEEYEERLKKEEQRYQALKA---HAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQK 187 (207)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555544444433 3445554433 4446677888899999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHh
Q 001727 813 NNFCEELEATCLELQLQL 830 (1020)
Q Consensus 813 ~~~~eEl~AkC~ELqeQL 830 (1020)
..-.+|+-.=|-||=-++
T Consensus 188 ~kEn~ELtkICDeLI~k~ 205 (207)
T PF05010_consen 188 TKENEELTKICDELISKM 205 (207)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999985554
No 89
>PRK03918 chromosome segregation protein; Provisional
Probab=79.92 E-value=1.8e+02 Score=36.85 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=15.0
Q ss_pred HHHhhhhhhHhhhhhhhhHHHHHHHHHh
Q 001727 205 TLMTRLDVTEKENAFLKYEFRILEKELE 232 (1020)
Q Consensus 205 ~l~~rLe~~eKen~sLkyE~~~l~kELe 232 (1020)
.+...++.++++...++.++..+++.++
T Consensus 304 ~l~~~~~~l~~~~~~l~~~~~~l~~~l~ 331 (880)
T PRK03918 304 EYLDELREIEKRLSRLEEEINGIEERIK 331 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555553
No 90
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=79.49 E-value=69 Score=36.24 Aligned_cols=164 Identities=21% Similarity=0.263 Sum_probs=98.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhhhhHhHHHHHHHH
Q 001727 714 LQEENRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMIEDQMENQKSINEDLDTQLTVAKA 793 (1020)
Q Consensus 714 ~~eE~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~~~Let~L~~~e~ 793 (1020)
...+|.+||+.-+.|...++.+...-..+..||---|+.++++.+++.-+|--..=.--|+... .+-..+..-...+..
T Consensus 106 l~d~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~-llDPAinl~F~rlK~ 184 (330)
T KOG2991|consen 106 LSDDITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRST-LLDPAINLFFLRLKG 184 (330)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHH-hhChHHHHHHHHHHH
Confidence 4578888988888888888888877778889998889989998888887664433333333321 222333334445566
Q ss_pred HHHHhhhhhhhhHHHHHH-----hhhhhHHHHHHHHHHHHHhhhhcc---CCCC--------CCCCCccccccchhhhHH
Q 001727 794 KLNEGFQKFSSLEVELEY-----RNNFCEELEATCLELQLQLESVAK---REPP--------SYGVNQGEKQSQNGWEMT 857 (1020)
Q Consensus 794 E~~el~~Ki~sLE~ELe~-----e~~~~eEl~AkC~ELqeQLer~~~---~~~~--------~~~~~~e~~~~k~e~EIa 857 (1020)
+++.-..|+.-+..||-- .+..-.-+.|||+=|+.+=+-..+ .+.- +--...++.+..++ |+-
T Consensus 185 ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seElkssq~-eL~ 263 (330)
T KOG2991|consen 185 ELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQASEGRIAELEIELAMQKSQSEELKSSQE-ELY 263 (330)
T ss_pred HHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHHhHH-HHH
Confidence 666666666655555431 233345789999999987665442 1110 00011122222221 222
Q ss_pred HHhhhHHH----HHHHHHHHHHHHhh
Q 001727 858 AASIKLAE----CQETILNLGKQLKA 879 (1020)
Q Consensus 858 aAAeKLAE----CQETI~nLGKQLKA 879 (1020)
---+-|-| -|+||+.|-.+||.
T Consensus 264 dfm~eLdedVEgmqsTiliLQq~Lke 289 (330)
T KOG2991|consen 264 DFMEELDEDVEGMQSTILILQQKLKE 289 (330)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 22222322 58899999999974
No 91
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=79.34 E-value=24 Score=34.90 Aligned_cols=69 Identities=17% Similarity=0.199 Sum_probs=48.1
Q ss_pred HHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhh
Q 001727 748 ESEEQIGNLETEVKALKESKEMIEDQMENQKSINEDLDTQLTVAKAKLNEGFQKFSSLEVELEYRNNFC 816 (1020)
Q Consensus 748 E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~~~Let~L~~~e~E~~el~~Ki~sLE~ELe~e~~~~ 816 (1020)
+.+..+.+|+..|+..|-|...+-.|-+.-......|..+......-++++..+|..+.-.+++++...
T Consensus 13 el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak 81 (107)
T PF09304_consen 13 ELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAK 81 (107)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777888888888888887777666665566666666666667777777777777766666665544
No 92
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=78.86 E-value=36 Score=37.51 Aligned_cols=65 Identities=23% Similarity=0.338 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhhhhHhHHH
Q 001727 724 ELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMIEDQMENQKSINEDLDTQL 788 (1020)
Q Consensus 724 ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~~~Let~L 788 (1020)
++..|+.+|....+........|.+++..+..|..++..+++-...++............|....
T Consensus 6 ~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~ 70 (246)
T PF00769_consen 6 EKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEA 70 (246)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555566666666666666666555555555544333333333343333
No 93
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=78.79 E-value=30 Score=37.57 Aligned_cols=90 Identities=24% Similarity=0.226 Sum_probs=66.2
Q ss_pred HHhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHhhhhHhhHHHH
Q 001727 126 KQLNFDQAEQEQRVHDAVVKTSGEFEKAQKELEKNLREANERIAKLAAENSHLSKALLVKEKMIEDLSKRKSQAEAEFST 205 (1020)
Q Consensus 126 rQLr~~rEEqEq~i~eav~~~s~e~ek~k~elE~kl~e~~~~l~~~~aEn~~Ls~al~~k~~~i~el~~~k~~ae~e~~~ 205 (1020)
+||+-+.-|.-+|.|+.|.-++ +|.++...+.........|..++..|.-=+.....+..+...+...
T Consensus 17 qQLke~q~E~~~K~~Eiv~Lr~------------ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~l 84 (202)
T PF06818_consen 17 QQLKESQAEVNQKDSEIVSLRA------------QLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAEL 84 (202)
T ss_pred HHHHHHHHHHHHHHhHHHHHHH------------HHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHH
Confidence 5677777888888888887554 4555555566666666666777777777766666666667777778
Q ss_pred HHhhhhhhHhhhhhhhhHHHHH
Q 001727 206 LMTRLDVTEKENAFLKYEFRIL 227 (1020)
Q Consensus 206 l~~rLe~~eKen~sLkyE~~~l 227 (1020)
|..++..++.|+..||-++...
T Consensus 85 Lrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 85 LREKLGQLEAELAELREELACA 106 (202)
T ss_pred hhhhhhhhHHHHHHHHHHHHhh
Confidence 8888888888998888888776
No 94
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=78.74 E-value=1.3e+02 Score=34.71 Aligned_cols=117 Identities=24% Similarity=0.333 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHH--------HHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHhhhhHhhHHHHH
Q 001727 135 QEQRVHDAVVKTSGEFEKAQKELEKN--------LREANERIAKLAAENSHLSKALLVKEKMIEDLSKRKSQAEAEFSTL 206 (1020)
Q Consensus 135 qEq~i~eav~~~s~e~ek~k~elE~k--------l~e~~~~l~~~~aEn~~Ls~al~~k~~~i~el~~~k~~ae~e~~~l 206 (1020)
-|..|--.++++-....+-+..|=.+ --.+.++|..+..|-..|-+.|.. .-+..+..|
T Consensus 74 EEE~isN~LlKkl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~-------------EqE~~V~kL 140 (310)
T PF09755_consen 74 EEEFISNTLLKKLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQ-------------EQEYLVNKL 140 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------hHHHHHHHH
Confidence 35567777777766665555444211 123444555555555555444421 112223566
Q ss_pred HhhhhhhHhhhhhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhhhhhhhh-----hHHHHhHHHHHHHHHHHhhh
Q 001727 207 MTRLDVTEKENAFLKYEFRILEKELEIRNEEMEYTRRSVEATHKQHLES-----VKKVAKLEAECERLRLLVRK 275 (1020)
Q Consensus 207 ~~rLe~~eKen~sLkyE~~~l~kELeiR~~Ere~~~~sae~a~KQhlEs-----vKKiakLEaECqRLR~lvRK 275 (1020)
+.+|+.++++..+++.++--|.+|= .+. |-+=.|-.|. .|.+.+|++|=+.|+.-+-.
T Consensus 141 ~k~i~~Le~e~~~~q~~le~Lr~EK----Vdl-------En~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~ 203 (310)
T PF09755_consen 141 QKKIERLEKEKSAKQEELERLRREK----VDL-------ENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQ 203 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH----HhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 6677766666655555554333320 000 0111111222 48899999999999887765
No 95
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=78.38 E-value=1.3e+02 Score=34.89 Aligned_cols=32 Identities=19% Similarity=0.374 Sum_probs=26.0
Q ss_pred hh-HHHHHHhhHHhHHHHHHHHhhhhhhhhHHH
Q 001727 324 IS-LLARLHDMEKENRTLKDIVITKSTELQASR 355 (1020)
Q Consensus 324 ~~-lt~rL~~~EeEnk~LKe~Lakkn~ELQ~sr 355 (1020)
.| |..|+..|+.|.+.|.+-|.+--+.....|
T Consensus 180 vN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~ 212 (310)
T PF09755_consen 180 VNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPR 212 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccCCCCCcc
Confidence 66 999999999999999998887666555444
No 96
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=78.06 E-value=12 Score=33.58 Aligned_cols=46 Identities=26% Similarity=0.340 Sum_probs=40.3
Q ss_pred hHHHHHHHhhhhhhhhhhHhHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 001727 766 SKEMIEDQMENQKSINEDLDTQLTVAKAKLNEGFQKFSSLEVELEY 811 (1020)
Q Consensus 766 S~~l~E~Qle~~~~~~~~Let~L~~~e~E~~el~~Ki~sLE~ELe~ 811 (1020)
.+..+..+|...+..|-.++.+|..++....++.++|..|+.+++.
T Consensus 12 akQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 12 AKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777888888888888889999999999999999999999988876
No 97
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=77.86 E-value=1.1e+02 Score=33.04 Aligned_cols=174 Identities=14% Similarity=0.162 Sum_probs=116.4
Q ss_pred HHHHHHhhhhcCCCCcccCCCCCCCCCCChhHHHHHhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001727 92 AVVKKELDETLKPPLSANENLPYAGAATAPMKCVKQLNFDQAEQEQRVHDAVVKTSGEFEKAQKELEKNLREANERIAKL 171 (1020)
Q Consensus 92 ~~lK~qLe~~~~~~~~~e~rv~hld~A~~LKeCmrQLr~~rEEqEq~i~eav~~~s~e~ek~k~elE~kl~e~~~~l~~~ 171 (1020)
..+|.=-.+.|..|+.+=.. ||+=|-++|.--+..+..+.++.....+=-+-++ .++..+.++.+.|...
T Consensus 12 ~~iK~YYndIT~~NL~lIks---------LKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~-~a~~e~~eL~k~L~~y 81 (201)
T PF13851_consen 12 QEIKNYYNDITLNNLELIKS---------LKEEIAEMKKKEERNEKLMAEISQENKRLSEPLK-KAEEEVEELRKQLKNY 81 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHH
Confidence 34555566666666644332 9999999999888888888888877655555554 5777788888877765
Q ss_pred HhhhHHhHHHHHHHHHHHHHHHHhhhhHhhHHHHHHhhhhhhHhhhhhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhhhh
Q 001727 172 AAENSHLSKALLVKEKMIEDLSKRKSQAEAEFSTLMTRLDVTEKENAFLKYEFRILEKELEIRNEEMEYTRRSVEATHKQ 251 (1020)
Q Consensus 172 ~aEn~~Ls~al~~k~~~i~el~~~k~~ae~e~~~l~~rLe~~eKen~sLkyE~~~l~kELeiR~~Ere~~~~sae~a~KQ 251 (1020)
..+-..|.. -..-+..+.+......-+...|..|++.+++|-..|.--|...--|+.=++..+++-..
T Consensus 82 ~kdK~~L~~----~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLE-------- 149 (201)
T PF13851_consen 82 EKDKQSLQN----LKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLE-------- 149 (201)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 555444332 22334456667777778888899999999999888887766666666666655555432
Q ss_pred hhhhhHHHHhHHHH----HHHHHHHhhhcCCCchHHHhhHHHHHh
Q 001727 252 HLESVKKVAKLEAE----CERLRLLVRKKLPGSAASAKMKSEVEM 292 (1020)
Q Consensus 252 hlEsvKKiakLEaE----CqRLR~lvRKklPgpAala~Mk~Eve~ 292 (1020)
+|+..|.+. =-.|..++...=|.|+|+..+..-|+.
T Consensus 150 -----kKl~~l~~~lE~keaqL~evl~~~nldp~~~~~v~~~l~~ 189 (201)
T PF13851_consen 150 -----KKLQALSEQLEKKEAQLNEVLAAANLDPAALSQVSKKLED 189 (201)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 334333322 234566667777888888877766654
No 98
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=77.69 E-value=86 Score=34.01 Aligned_cols=114 Identities=20% Similarity=0.207 Sum_probs=62.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhH---HHHHHHHHHhHHHHHHHhhhhhhhhhhHhHHHHH
Q 001727 714 LQEENRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNL---ETEVKALKESKEMIEDQMENQKSINEDLDTQLTV 790 (1020)
Q Consensus 714 ~~eE~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~L---qsEL~~~keS~~l~E~Qle~~~~~~~~Let~L~~ 790 (1020)
..+|+.+|+..+..++.-=+.-...+..++.|++-+.+.+... ..||..++.+-..+|.+ |..|-.+..-
T Consensus 20 L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~-------~~~L~aq~rq 92 (193)
T PF14662_consen 20 LADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEE-------NRSLLAQARQ 92 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 4567777777777666666666666666666666555444433 34444444444444433 3344444555
Q ss_pred HHHHHHHhhhhhhhhHHHHHHhhh-------hhHHHHHHHHHHHHHhhhhc
Q 001727 791 AKAKLNEGFQKFSSLEVELEYRNN-------FCEELEATCLELQLQLESVA 834 (1020)
Q Consensus 791 ~e~E~~el~~Ki~sLE~ELe~e~~-------~~eEl~AkC~ELqeQLer~~ 834 (1020)
++.|...+..+|.+|.+|-.+=.. .+.++-..-..||-|+-.++
T Consensus 93 lEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e 143 (193)
T PF14662_consen 93 LEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFE 143 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 566666666666666655544443 34444444555566664444
No 99
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=77.26 E-value=94 Score=32.11 Aligned_cols=86 Identities=22% Similarity=0.319 Sum_probs=42.9
Q ss_pred hhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhh
Q 001727 736 TDRSEALVTQLHESEEQIGNLETEVKALKESKEMIEDQMENQKSINEDLDTQLTVAKAKLNEGFQKFSSLEVELEYRNNF 815 (1020)
Q Consensus 736 ~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~~~Let~L~~~e~E~~el~~Ki~sLE~ELe~e~~~ 815 (1020)
...+++++.++..+-..+..|..+|.++..-+..+..+++.+..--+.|++....+. ..|.-+|.+ ....
T Consensus 51 k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~-------~~l~~~E~e---k~q~ 120 (140)
T PF10473_consen 51 KAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLE-------NLLQEKEQE---KVQL 120 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHHH---HHHH
Confidence 334444555555555555556666666666666666666665544444444333222 222222222 3444
Q ss_pred hHHHHHHHHHHHHHhh
Q 001727 816 CEELEATCLELQLQLE 831 (1020)
Q Consensus 816 ~eEl~AkC~ELqeQLe 831 (1020)
.++.-..-..|+.|+.
T Consensus 121 ~e~~~~~ve~L~~ql~ 136 (140)
T PF10473_consen 121 KEESKSAVEMLQKQLK 136 (140)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4455555555555554
No 100
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=76.44 E-value=69 Score=39.78 Aligned_cols=79 Identities=18% Similarity=0.156 Sum_probs=47.0
Q ss_pred HHHHHhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHhhhhccCCCCCCC----CCccccccchhhhHHHHhhhHHHHHH
Q 001727 793 AKLNEGFQKFSSLEVELEYRNNFCEELEATCLELQLQLESVAKREPPSYG----VNQGEKQSQNGWEMTAASIKLAECQE 868 (1020)
Q Consensus 793 ~E~~el~~Ki~sLE~ELe~e~~~~eEl~AkC~ELqeQLer~~~~~~~~~~----~~~e~~~~k~e~EIaaAAeKLAECQE 868 (1020)
.++..+++++..++.|+..+-.. +..|+.+++++.+..+-... .+-.+..-+|.-||..--.=-.+=|+
T Consensus 447 ~~ik~~r~~~k~~~~e~~~Kee~-------~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQk 519 (594)
T PF05667_consen 447 QEIKELREEIKEIEEEIRQKEEL-------YKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQK 519 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555444333 34566677777654221110 02233445777889888877888899
Q ss_pred HHHHHHHHHh
Q 001727 869 TILNLGKQLK 878 (1020)
Q Consensus 869 TI~nLGKQLK 878 (1020)
.|-+|+-+|.
T Consensus 520 eiN~l~gkL~ 529 (594)
T PF05667_consen 520 EINSLTGKLD 529 (594)
T ss_pred HHHHHHHHHH
Confidence 9999999986
No 101
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=76.24 E-value=34 Score=41.62 Aligned_cols=93 Identities=17% Similarity=0.288 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhhhhHhHHHHHHHHH
Q 001727 715 QEENRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMIEDQMENQKSINEDLDTQLTVAKAK 794 (1020)
Q Consensus 715 ~eE~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~~~Let~L~~~e~E 794 (1020)
...|.+|-.++-..+.+...-..+-+.+..+|..+|+....+..+|..++.....++++|..... .|+.||..+---
T Consensus 419 ~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~---NYE~QLs~MSEH 495 (518)
T PF10212_consen 419 MSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRR---NYEEQLSMMSEH 495 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHH
Confidence 46777888888777777777777888888888888888888999999999999999998888774 445666665555
Q ss_pred HHHhhhhhhhhHHHHH
Q 001727 795 LNEGFQKFSSLEVELE 810 (1020)
Q Consensus 795 ~~el~~Ki~sLE~ELe 810 (1020)
+-.|..|+..-.+||+
T Consensus 496 LasmNeqL~~Q~eeI~ 511 (518)
T PF10212_consen 496 LASMNEQLAKQREEIQ 511 (518)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555544444
No 102
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=76.03 E-value=66 Score=37.19 Aligned_cols=85 Identities=15% Similarity=0.163 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHhhhhHhhHHHHHHhhhhhhHhhhhhhhhHHHHHHHHHhhhh
Q 001727 156 ELEKNLREANERIAKLAAENSHLSKALLVKEKMIEDLSKRKSQAEAEFSTLMTRLDVTEKENAFLKYEFRILEKELEIRN 235 (1020)
Q Consensus 156 elE~kl~e~~~~l~~~~aEn~~Ls~al~~k~~~i~el~~~k~~ae~e~~~l~~rLe~~eKen~sLkyE~~~l~kELeiR~ 235 (1020)
-|...+.++.++|.++.-++..|...+....-.-..+ ..+... .+-++|-..||.+.+.|..|.++|+.+.-|.+==.
T Consensus 83 ~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~-~~~~~~-~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~ 160 (319)
T PF09789_consen 83 KLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGI-GARHFP-HEREDLVEQLEKLREQIEQLERDLQSLLDEKEELV 160 (319)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccc-cccccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777788888888877766654322222222 111111 45578889999999999999999999999999889
Q ss_pred hhhhhhh
Q 001727 236 EEMEYTR 242 (1020)
Q Consensus 236 ~Ere~~~ 242 (1020)
.|||+=+
T Consensus 161 ~ERD~yk 167 (319)
T PF09789_consen 161 TERDAYK 167 (319)
T ss_pred HHHHHHH
Confidence 9998754
No 103
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=75.95 E-value=89 Score=31.20 Aligned_cols=31 Identities=23% Similarity=0.173 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHhhhhhhhhHHHHHHhhhh
Q 001727 785 DTQLTVAKAKLNEGFQKFSSLEVELEYRNNF 815 (1020)
Q Consensus 785 et~L~~~e~E~~el~~Ki~sLE~ELe~e~~~ 815 (1020)
...|..++.+++.+...|..|..+++.=+..
T Consensus 58 ~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~ 88 (132)
T PF07926_consen 58 IKELQQLREELQELQQEINELKAEAESAKAE 88 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666677777777666666665554333
No 104
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=75.77 E-value=95 Score=38.63 Aligned_cols=154 Identities=18% Similarity=0.220 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhhhhHhHHHHHHHHH
Q 001727 715 QEENRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMIEDQMENQKSINEDLDTQLTVAKAK 794 (1020)
Q Consensus 715 ~eE~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~~~Let~L~~~e~E 794 (1020)
..|++.|+.++..+...+..+...++.+...+..++..+...+.+...+++...+.+.= ..+-.+-+..+..++.-
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~----~~lL~d~e~ni~kL~~~ 402 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKT----VELLPDAEENIAKLQAL 402 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhcCcHHHHHHHHHH
Confidence 45667777777777777777777777777766666666666666555543333322111 12223344555666666
Q ss_pred HHHhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCccccccchhhhHHHHhhhHHHHHHHHHHHH
Q 001727 795 LNEGFQKFSSLEVELEYRNNFCEELEATCLELQLQLESVAKREPPSYGVNQGEKQSQNGWEMTAASIKLAECQETILNLG 874 (1020)
Q Consensus 795 ~~el~~Ki~sLE~ELe~e~~~~eEl~AkC~ELqeQLer~~~~~~~~~~~~~e~~~~k~e~EIaaAAeKLAECQETI~nLG 874 (1020)
++...+++-.|..+.++.|. .+..+++.|+........ +..... ++-+.++ .+|-...+.+..=.+.+..|.
T Consensus 403 v~~s~~rl~~L~~qWe~~R~---pL~~e~r~lk~~~~~~~~-e~~~~~--~~ik~~r--~~~k~~~~e~~~Kee~~~qL~ 474 (594)
T PF05667_consen 403 VEASEQRLVELAQQWEKHRA---PLIEEYRRLKEKASNRES-ESKQKL--QEIKELR--EEIKEIEEEIRQKEELYKQLV 474 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHhhcch-HHHHHH--HHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777665 556677777766553331 000000 1111122 234444455555566777788
Q ss_pred HHHhhc
Q 001727 875 KQLKAL 880 (1020)
Q Consensus 875 KQLKAL 880 (1020)
+++..|
T Consensus 475 ~e~e~~ 480 (594)
T PF05667_consen 475 KELEKL 480 (594)
T ss_pred HHHHhC
Confidence 888776
No 105
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=75.57 E-value=63 Score=41.63 Aligned_cols=67 Identities=24% Similarity=0.190 Sum_probs=33.8
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCccccccchhhhHHHHhhhHHHHHH
Q 001727 789 TVAKAKLNEGFQKFSSLEVELEYRNNFCEELEATCLELQLQLESVAKREPPSYGVNQGEKQSQNGWEMTAASIKLAECQE 868 (1020)
Q Consensus 789 ~~~e~E~~el~~Ki~sLE~ELe~e~~~~eEl~AkC~ELqeQLer~~~~~~~~~~~~~e~~~~k~e~EIaaAAeKLAECQE 868 (1020)
...+.-+.++-.+...|...|+.-......+++|..+....+++ .+.|++....++++-|.
T Consensus 455 e~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~-------------------l~~El~~l~~e~~~lq~ 515 (980)
T KOG0980|consen 455 ESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALES-------------------LRQELALLLIELEELQR 515 (980)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-------------------HHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444443 34556666777777777
Q ss_pred HHHHHH
Q 001727 869 TILNLG 874 (1020)
Q Consensus 869 TI~nLG 874 (1020)
++-|+.
T Consensus 516 ~~~~~~ 521 (980)
T KOG0980|consen 516 TLSNLA 521 (980)
T ss_pred HhhhHH
Confidence 765543
No 106
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=74.85 E-value=1e+02 Score=33.41 Aligned_cols=37 Identities=19% Similarity=0.229 Sum_probs=16.5
Q ss_pred hhHHHHHHhhhhhhHhhhhhhhhHHHHHHHHHhhhhh
Q 001727 200 EAEFSTLMTRLDVTEKENAFLKYEFRILEKELEIRNE 236 (1020)
Q Consensus 200 e~e~~~l~~rLe~~eKen~sLkyE~~~l~kELeiR~~ 236 (1020)
...+..+..+++...+++..+|-.+..+...|+-|..
T Consensus 69 ~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~ 105 (302)
T PF10186_consen 69 RERLERLRERIERLRKRIEQKRERLEELRESLEQRRS 105 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444433
No 107
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=74.81 E-value=15 Score=34.01 Aligned_cols=65 Identities=26% Similarity=0.336 Sum_probs=53.6
Q ss_pred HHHhhhhhhHhhhhhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhhhhhhhhhHHHHhHHHHHHHHHHHhhh
Q 001727 205 TLMTRLDVTEKENAFLKYEFRILEKELEIRNEEMEYTRRSVEATHKQHLESVKKVAKLEAECERLRLLVRK 275 (1020)
Q Consensus 205 ~l~~rLe~~eKen~sLkyE~~~l~kELeiR~~Ere~~~~sae~a~KQhlEsvKKiakLEaECqRLR~lvRK 275 (1020)
+....++.+.|||-.||..++-+.+.|. ..+-...+.+.|+..|-=--+..|.-|.++++.+++.
T Consensus 4 Eqe~~i~~L~KENF~LKLrI~fLee~l~------~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~ 68 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNLKLRIYFLEERLQ------KLGPESIEELLKENIELKVEVESLKRELQEKKKLLKE 68 (75)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH------hcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456688889999999999999999998 4455677888888888666778888899998888865
No 108
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=74.08 E-value=58 Score=39.39 Aligned_cols=29 Identities=21% Similarity=0.226 Sum_probs=18.9
Q ss_pred hhhhhhhhhHHHHhHHHHHHHHHHHhhhc
Q 001727 248 THKQHLESVKKVAKLEAECERLRLLVRKK 276 (1020)
Q Consensus 248 a~KQhlEsvKKiakLEaECqRLR~lvRKk 276 (1020)
.++|.-...-|+..-|.|.|+||.-+..+
T Consensus 353 ~~~~~s~~~~k~~~ke~E~q~lr~~l~~~ 381 (511)
T PF09787_consen 353 LSRQKSPLQLKLKEKESEIQKLRNQLSAR 381 (511)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445556666688888888877553
No 109
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=74.04 E-value=1.3e+02 Score=37.72 Aligned_cols=31 Identities=19% Similarity=0.253 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 001727 716 EENRRLRDELKSMAARLESATDRSEALVTQL 746 (1020)
Q Consensus 716 eE~e~Lk~ek~~le~~L~~~~~~~E~~~~ql 746 (1020)
.++..|+..+.....++..+......++.++
T Consensus 237 ~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l 267 (754)
T TIGR01005 237 QQLAELNTELSRARANRAAAEGTADSVKKAL 267 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777776666666666555555555444
No 110
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.96 E-value=1.1e+02 Score=39.20 Aligned_cols=159 Identities=18% Similarity=0.204 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHH-------HHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhhhhH---hHHHHHHHHHH
Q 001727 726 KSMAARLESATDRSEALVTQLH-------ESEEQIGNLETEVKALKESKEMIEDQMENQKSINEDL---DTQLTVAKAKL 795 (1020)
Q Consensus 726 ~~le~~L~~~~~~~E~~~~ql~-------E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~~~L---et~L~~~e~E~ 795 (1020)
-+...++......++.+..|.. ++.+.|.++|..|.-+--.++++..||+.+-....-- -++|..+..+-
T Consensus 461 ~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~k 540 (1118)
T KOG1029|consen 461 QDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKK 540 (1118)
T ss_pred hhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHH
Confidence 3333333444444544444433 3334444444444444444556667776655433111 11222222222
Q ss_pred HH----hhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCccccccchhhhHHHHhhhHHHHHHHHH
Q 001727 796 NE----GFQKFSSLEVELEYRNNFCEELEATCLELQLQLESVAKREPPSYGVNQGEKQSQNGWEMTAASIKLAECQETIL 871 (1020)
Q Consensus 796 ~e----l~~Ki~sLE~ELe~e~~~~eEl~AkC~ELqeQLer~~~~~~~~~~~~~e~~~~k~e~EIaaAAeKLAECQETI~ 871 (1020)
+. +.-++..|+.|.+.+.+--.=+-....||.+.+-+ ++++.+...-.--+||-|-|-.++
T Consensus 541 e~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~~~~---------------q~lake~~yk~e~d~~ke~et~~l 605 (1118)
T KOG1029|consen 541 ELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVNS---------------QQLAKEELYKNERDKLKEAETKAL 605 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 22234444444444433333333333333333322 344444444445688888888899
Q ss_pred HHHHHHhhccCCccccccccccccCCCCcc
Q 001727 872 NLGKQLKALASPREAVLFDKVFSTTNPAIT 901 (1020)
Q Consensus 872 nLGKQLKALa~p~e~~lfDk~~stt~~~~~ 901 (1020)
.|-.+-++=..++- --|.-.+.+-+.++
T Consensus 606 el~~~ke~e~~~as--a~~~~~~~~~~et~ 633 (1118)
T KOG1029|consen 606 ELIGEKEAESAPAS--AADAGAPAPWPETT 633 (1118)
T ss_pred HHHhhhhhccchhh--cccCCCCccccccc
Confidence 99888776544432 23444444444433
No 111
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=73.46 E-value=84 Score=34.30 Aligned_cols=115 Identities=23% Similarity=0.287 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHHH
Q 001727 718 NRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMIEDQMENQKSINEDLDTQLTVAKAKLNE 797 (1020)
Q Consensus 718 ~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~~~Let~L~~~e~E~~e 797 (1020)
++..--++-.++.+|.++.+..|.--+++.+++..+.-+.+.|.++..++..++.....-...-+-+-..|..+++-.+.
T Consensus 83 ~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~ 162 (205)
T KOG1003|consen 83 YEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEF 162 (205)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 44444566788999999999999999999999999999999999999999988888777665556666677777777776
Q ss_pred hhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHhhh
Q 001727 798 GFQKFSSLEVELEYRNNFCEELEATCLELQLQLES 832 (1020)
Q Consensus 798 l~~Ki~sLE~ELe~e~~~~eEl~AkC~ELqeQLer 832 (1020)
+-.-+-.|+.++.+=-.-+.+.-.+|..++..|..
T Consensus 163 aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~ 197 (205)
T KOG1003|consen 163 AERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDE 197 (205)
T ss_pred HHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 66666667666554333333333445555554443
No 112
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=72.94 E-value=77 Score=41.64 Aligned_cols=149 Identities=19% Similarity=0.170 Sum_probs=79.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhhhhHhHHHHHHH
Q 001727 713 NLQEENRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMIEDQMENQKSINEDLDTQLTVAK 792 (1020)
Q Consensus 713 ~~~eE~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~~~Let~L~~~e 792 (1020)
.+..++.+|+..+..|...|..-.. ....+.+.+.+|.+|+..|.. ...+++.++..-..++.++.-.+
T Consensus 649 wdek~~~~L~~~k~rl~eel~ei~~----~~~e~~~v~~~i~~le~~~~~-------~~~~~~~~k~~l~~~~~El~~~~ 717 (1141)
T KOG0018|consen 649 WDEKEVDQLKEKKERLLEELKEIQK----RRKEVSSVESKIHGLEMRLKY-------SKLDLEQLKRSLEQNELELQRTE 717 (1141)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHH----hhhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999888888744333 222444555555555555543 55566666655566666666667
Q ss_pred HHHHHhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCC---ccccccchhhhHHHHhhhHHHHHHH
Q 001727 793 AKLNEGFQKFSSLEVELEYRNNFCEELEATCLELQLQLESVAKREPPSYGVN---QGEKQSQNGWEMTAASIKLAECQET 869 (1020)
Q Consensus 793 ~E~~el~~Ki~sLE~ELe~e~~~~eEl~AkC~ELqeQLer~~~~~~~~~~~~---~e~~~~k~e~EIaaAAeKLAECQET 869 (1020)
.++++..-+|+-++.+|+..-..-.++..+-.+++..+=+ .-++.-... =++-+.+++ -|.|+.|-+.-
T Consensus 718 ~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~---~f~~~igv~ir~Yee~~~~~~-----~a~k~~ef~~q 789 (1141)
T KOG0018|consen 718 SEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIFK---GFCRRIGVRIREYEERELQQE-----FAKKRLEFENQ 789 (1141)
T ss_pred HHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhcCeeeehHHHHHHHHH-----HHHHHHHHHHH
Confidence 7777666666666666655443333333333333322211 111111111 011111221 25777777777
Q ss_pred HHHHHHHHhhc
Q 001727 870 ILNLGKQLKAL 880 (1020)
Q Consensus 870 I~nLGKQLKAL 880 (1020)
|+.|+-||.-.
T Consensus 790 ~~~l~~~l~fe 800 (1141)
T KOG0018|consen 790 KAKLENQLDFE 800 (1141)
T ss_pred HHHHhhhhhhe
Confidence 77777777543
No 113
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=72.92 E-value=2.5e+02 Score=35.00 Aligned_cols=265 Identities=13% Similarity=0.140 Sum_probs=132.2
Q ss_pred HHHHHHHHhhhhhccccHHHHHHHHHHHhcccCCCccccccccccccCCCCCCCCCccccccCCCCCccCCccccchhhh
Q 001727 509 QVVLNAMLKQRQISKQSLDKLLEDIRIALGYVNYPTVVAADSVAASTQPRESKSPNTSYIAHSLPGDCRNGKERSSQHLE 588 (1020)
Q Consensus 509 q~~l~~v~~~~~~~~~~~~~ILe~Ir~AL~~i~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (1020)
..+.+.+.+.=...-..+..|-|+|-..|+....| .+++-. +- .+.++-+.|..
T Consensus 106 ~~iFkfLY~~Ldp~y~f~~r~EeEV~~ilK~L~YP---f~~siS-s~------~a~gspH~WP~---------------- 159 (581)
T KOG0995|consen 106 IAIFKFLYGFLDPDYEFPERIEEEVVQILKNLKYP---FLLSIS-SL------QAAGSPHNWPH---------------- 159 (581)
T ss_pred HHHHHHHHhccCCCcccchhHHHHHHHHHHhCCCC---cccchh-hh------ccCCCCCccHH----------------
Confidence 55566665443333344478999999999999877 122221 11 12222233321
Q ss_pred hhhHHHHHHHHHHHhhccccccCCCCCceeecccCchh----HH-HHHHHHHHHhhhhcCCcccHHHHHHHHHHHHHHHH
Q 001727 589 SDLSKSICKIIELIEGVNVTSSVSHPYSVHVFQWNPSE----LH-AVLQKFVCACNDLLGGKADLDKFAEELSSALDWIM 663 (1020)
Q Consensus 589 ~dls~si~kI~~lie~~~~~~~~~~~~~v~~fq~k~sE----L~-~~Le~f~~~C~dvL~gka~le~f~~EL~~~L~wi~ 663 (1020)
+-.++.=++++|.--+....++ ..|.... +. ..+..|+....-.+.|..+......|+-..|.-+.
T Consensus 160 --iL~mlhWlvdlI~~~t~~v~~~-------~l~q~~~ed~~m~k~f~dy~~~~Y~~fl~g~d~~~~~~~Elk~~l~~~~ 230 (581)
T KOG0995|consen 160 --ILGMLHWLVDLIRINTALVEDS-------PLEQEEAEDKTMNKLFFDYTIRSYTSFLKGEDNSSELEDELKHRLEKYF 230 (581)
T ss_pred --HHHHHHHHHHHHHHhHHHhhcc-------chhccchHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHH
Confidence 2233334445554333332222 1133322 23 44555666667788898888888888888887655
Q ss_pred h-hhccccchhhhHHHHhhhcCCcccccccccccccccccccCcccccccccHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 001727 664 N-NCIAHKDASRARNKVKKHFGLLVESNEVHIPEEQSSASLQGQNVLSQSNLQEENRRLRDELKSMAARLESATDRSEAL 742 (1020)
Q Consensus 664 n-~~~s~~d~s~~~d~i~k~f~~~~~~dkv~l~e~k~~c~~~~~~~~~q~~~~eE~e~Lk~ek~~le~~L~~~~~~~E~~ 742 (1020)
. ..+.+-+....-+.+.+....- .+. ...++-|+.++..|..++...+.-....
T Consensus 231 ~~i~~~ie~l~~~n~~l~e~i~e~----------ek~---------------~~~~eslre~~~~L~~D~nK~~~y~~~~ 285 (581)
T KOG0995|consen 231 TSIANEIEDLKKTNRELEEMINER----------EKD---------------PGKEESLREKKARLQDDVNKFQAYVSQM 285 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------hcC---------------cchHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 5 3332222222222221111100 000 0111223333333333333333333333
Q ss_pred HHHHHHHHHHHhhHH-------HHHHHHHHhHHHHHHHhhhhhhh----------hhhHhHHHHHHHHHHHHhhhhhhhh
Q 001727 743 VTQLHESEEQIGNLE-------TEVKALKESKEMIEDQMENQKSI----------NEDLDTQLTVAKAKLNEGFQKFSSL 805 (1020)
Q Consensus 743 ~~ql~E~E~~i~~Lq-------sEL~~~keS~~l~E~Qle~~~~~----------~~~Let~L~~~e~E~~el~~Ki~sL 805 (1020)
+..-+.+++.|..++ .|+++++.-+.-+-.|+++|..+ ...|...+..+..+++.+.+++-.+
T Consensus 286 ~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~ 365 (581)
T KOG0995|consen 286 KSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWEL 365 (581)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 333333333333333 33335555555555666665533 2445556666677777777777777
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhhhh
Q 001727 806 EVELEYRNNFCEELEATCLELQLQLESV 833 (1020)
Q Consensus 806 E~ELe~e~~~~eEl~AkC~ELqeQLer~ 833 (1020)
+-++++--..-+.....|..|=-.|-+.
T Consensus 366 ~l~~~~~f~~le~~~~~~~~l~~~i~l~ 393 (581)
T KOG0995|consen 366 KLEIEDFFKELEKKFIDLNSLIRRIKLG 393 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777666666667777666665554
No 114
>PRK02224 chromosome segregation protein; Provisional
Probab=72.53 E-value=2.8e+02 Score=35.36 Aligned_cols=51 Identities=27% Similarity=0.449 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHH
Q 001727 717 ENRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKE 768 (1020)
Q Consensus 717 E~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~ 768 (1020)
++..+..++.+++.++.... .+..+...+.+.+..+..++.++..+++-..
T Consensus 573 ~~~~~~~~~~~l~~~~~~le-~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~ 623 (880)
T PRK02224 573 EVAELNSKLAELKERIESLE-RIRTLLAAIADAEDEIERLREKREALAELND 623 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443 2333344444444444444444444333333
No 115
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=72.36 E-value=29 Score=38.42 Aligned_cols=70 Identities=19% Similarity=0.338 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhhhhHhHHHHH
Q 001727 721 LRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMIEDQMENQKSINEDLDTQLTV 790 (1020)
Q Consensus 721 Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~~~Let~L~~ 790 (1020)
||....++-.+|+.-+...+.+...+.+.|..+.++|..|..+...++.++..++.----+.+|.+++..
T Consensus 133 ~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~E 202 (290)
T COG4026 133 LKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDE 202 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 3333344444466666667788888888888888999999988888888887766655445555555443
No 116
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=72.36 E-value=3.3e+02 Score=36.17 Aligned_cols=88 Identities=20% Similarity=0.309 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHHHhhhhhhh
Q 001727 725 LKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMIEDQMENQKSINEDLDTQLTVAKAKLNEGFQKFSS 804 (1020)
Q Consensus 725 k~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~~~Let~L~~~e~E~~el~~Ki~s 804 (1020)
+++++..|.-+...++.....++..++....|+.|...++..-+..+.|+..+...-++|.+++..+++.+.....-...
T Consensus 789 lkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~ 868 (1174)
T KOG0933|consen 789 LKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKK 868 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHH
Confidence 34444444444444444445555555555555555555555555555555555544455555555444444444444444
Q ss_pred hHHHHHHh
Q 001727 805 LEVELEYR 812 (1020)
Q Consensus 805 LE~ELe~e 812 (1020)
+..+|.+.
T Consensus 869 ~~~el~~~ 876 (1174)
T KOG0933|consen 869 AQAELKDQ 876 (1174)
T ss_pred HHHHHHHH
Confidence 44444433
No 117
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=71.42 E-value=1.5e+02 Score=33.76 Aligned_cols=15 Identities=13% Similarity=0.248 Sum_probs=6.0
Q ss_pred EEEeccCcchhhHHH
Q 001727 986 LAVVPSKKRGVGLLL 1000 (1020)
Q Consensus 986 lAIVP~KK~G~~llr 1000 (1020)
.-|+-.++.-+.+|-
T Consensus 395 v~i~~~~~~~~~~~l 409 (423)
T TIGR01843 395 ADIKTGERTVIEYLL 409 (423)
T ss_pred EEEEeCCccHHHHHH
Confidence 334444443344433
No 118
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=71.06 E-value=46 Score=33.02 Aligned_cols=94 Identities=23% Similarity=0.285 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHhhhhHhhHHHHHHhhhhhhHhhhhhhhhHHHHHH
Q 001727 149 EFEKAQKELEKNLREANERIAKLAAENSHLSKALLVKEKMIEDLSKRKSQAEAEFSTLMTRLDVTEKENAFLKYEFRILE 228 (1020)
Q Consensus 149 e~ek~k~elE~kl~e~~~~l~~~~aEn~~Ls~al~~k~~~i~el~~~k~~ae~e~~~l~~rLe~~eKen~sLkyE~~~l~ 228 (1020)
.++.-+.+++.+|+-++..|...+... .+|-.++-+.++-...|++..++..+-+..|+.+|--+-
T Consensus 6 ~l~as~~el~n~La~Le~slE~~K~S~--------------~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~ 71 (107)
T PF09304_consen 6 ALEASQNELQNRLASLERSLEDEKTSQ--------------GELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEAR 71 (107)
T ss_dssp --------HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhH--------------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566777778877777665555443 333344444444445555555555555555555554443
Q ss_pred HHHhhhhhhhhhhhhhHHHhhhhhhhhhHHHHhHHHHHHHHHHHhhhcCCC
Q 001727 229 KELEIRNEEMEYTRRSVEATHKQHLESVKKVAKLEAECERLRLLVRKKLPG 279 (1020)
Q Consensus 229 kELeiR~~Ere~~~~sae~a~KQhlEsvKKiakLEaECqRLR~lvRKklPg 279 (1020)
+ .+++ .|.|||+-+-+++++=..|-.|-
T Consensus 72 ~----------------------~le~-eK~ak~~l~~r~~k~~~dka~le 99 (107)
T PF09304_consen 72 R----------------------NLED-EKQAKLELESRLLKAQKDKAILE 99 (107)
T ss_dssp H----------------------HHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H----------------------HHHH-HHHHHHHHHHHHHHHHhhhhHHH
Confidence 3 3455 78999999999999998886654
No 119
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.99 E-value=83 Score=40.24 Aligned_cols=115 Identities=21% Similarity=0.275 Sum_probs=61.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhH---HHHHHHHHHhHHHHHHHhhhhh-hh---------
Q 001727 714 LQEENRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNL---ETEVKALKESKEMIEDQMENQK-SI--------- 780 (1020)
Q Consensus 714 ~~eE~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~L---qsEL~~~keS~~l~E~Qle~~~-~~--------- 780 (1020)
...|+.+|...++++...|+.-.-....+--|+..+......- +++|..+-..+.++-.+|+.+. ++
T Consensus 484 ~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~ 563 (1118)
T KOG1029|consen 484 MISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLN 563 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777777766666666666666555544332 4556666666666655555443 01
Q ss_pred -hhhHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHhh
Q 001727 781 -NEDLDTQLTVAKAKLNEGFQKFSSLEVELEYRNNFCEELEATCLELQLQLE 831 (1020)
Q Consensus 781 -~~~Let~L~~~e~E~~el~~Ki~sLE~ELe~e~~~~eEl~AkC~ELqeQLe 831 (1020)
...++.++.++.++++..+ -.+|.....++..-.|.+.+-++|.-+.+
T Consensus 564 eidi~n~qlkelk~~~~~q~---lake~~yk~e~d~~ke~et~~lel~~~ke 612 (1118)
T KOG1029|consen 564 EIDIFNNQLKELKEDVNSQQ---LAKEELYKNERDKLKEAETKALELIGEKE 612 (1118)
T ss_pred hhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 1233444444444444332 23333333344444455556666555443
No 120
>PRK11281 hypothetical protein; Provisional
Probab=69.17 E-value=1.5e+02 Score=39.67 Aligned_cols=57 Identities=16% Similarity=0.233 Sum_probs=41.8
Q ss_pred hhhhHHHHHHHHHhhhhhhhhhhhhhHHHhhhhhhhhhHHHHhHHHHHHHHHHHhhh
Q 001727 219 FLKYEFRILEKELEIRNEEMEYTRRSVEATHKQHLESVKKVAKLEAECERLRLLVRK 275 (1020)
Q Consensus 219 sLkyE~~~l~kELeiR~~Ere~~~~sae~a~KQhlEsvKKiakLEaECqRLR~lvRK 275 (1020)
.|.-|+..+.-+.+.+..|..=+..--|...+|+-.--++|..+|++.+.|...+-.
T Consensus 196 ~l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~ 252 (1113)
T PRK11281 196 LLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINS 252 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555556667788889988899999999999999987754
No 121
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=68.50 E-value=56 Score=40.58 Aligned_cols=80 Identities=26% Similarity=0.331 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhHHHHHHH
Q 001727 744 TQLHESEEQIGNLETEVKALKESKEMIEDQMENQKSINEDLDTQLTVAKAKLNEGFQKFSSLEVELEYRNNFCEELEATC 823 (1020)
Q Consensus 744 ~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~~~Let~L~~~e~E~~el~~Ki~sLE~ELe~e~~~~eEl~AkC 823 (1020)
.+++..+..+.+|+.++..++.-..+++.++....--.+ ... --..|+..+...|..|+.+|+.++.--+++..+.
T Consensus 429 ~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~--~~~--~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l 504 (652)
T COG2433 429 ETVERLEEENSELKRELEELKREIEKLESELERFRREVR--DKV--RKDREIRARDRRIERLEKELEEKKKRVEELERKL 504 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445555555555555555555544432111 111 1246777788889999999999988888887777
Q ss_pred HHHH
Q 001727 824 LELQ 827 (1020)
Q Consensus 824 ~ELq 827 (1020)
.+|.
T Consensus 505 ~~l~ 508 (652)
T COG2433 505 AELR 508 (652)
T ss_pred HHHH
Confidence 7665
No 122
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=68.42 E-value=4.3e+02 Score=35.84 Aligned_cols=50 Identities=24% Similarity=0.197 Sum_probs=29.4
Q ss_pred HHHHHHhhHHhHHHHHHHHhhhhhhhhHHHhhhhhhhhhhhHHHHHHHHh
Q 001727 326 LLARLHDMEKENRTLKDIVITKSTELQASRMMFSRTASRLSYVESQLREI 375 (1020)
Q Consensus 326 lt~rL~~~EeEnk~LKe~Lakkn~ELQ~sr~m~a~taskLs~le~ql~~l 375 (1020)
+..-+..+..+-..+.+-.+.-+.+++..-....-.-..|..++.++...
T Consensus 575 l~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~ 624 (1311)
T TIGR00606 575 LEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSY 624 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555556666666666666666665555555555666666666643
No 123
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=68.38 E-value=1.6e+02 Score=39.89 Aligned_cols=120 Identities=19% Similarity=0.233 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHH-HHHhhhhhhhhhhHhHHHHHHHH
Q 001727 715 QEENRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMI-EDQMENQKSINEDLDTQLTVAKA 793 (1020)
Q Consensus 715 ~eE~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~-E~Qle~~~~~~~~Let~L~~~e~ 793 (1020)
..++..+..++..++.++..+...++.+..++..+++.+..++.++..++.|...- ..++..-..-.+.+...+.....
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~a~~~~~eL~el~~ql~~~~~~a~~~~~ 354 (1353)
T TIGR02680 275 QTQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQGSPAYQDAEELERARADAEALQAAAADARQ 354 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888888888888888889999999999999999888776652 12222222222444455555556
Q ss_pred HHHHhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHhhhhc
Q 001727 794 KLNEGFQKFSSLEVELEYRNNFCEELEATCLELQLQLESVA 834 (1020)
Q Consensus 794 E~~el~~Ki~sLE~ELe~e~~~~eEl~AkC~ELqeQLer~~ 834 (1020)
++.....+...++.++++-.....+....+.+..+.|....
T Consensus 355 ~~~~a~~~~e~~~~~~~~~~~r~~~~~~~l~~~~~el~~~a 395 (1353)
T TIGR02680 355 AIREAESRLEEERRRLDEEAGRLDDAERELRAAREQLARAA 395 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666777777777766666677677666666666544
No 124
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=68.05 E-value=3e+02 Score=33.92 Aligned_cols=133 Identities=16% Similarity=0.221 Sum_probs=88.7
Q ss_pred HHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhhh---hHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhHHHHHHH
Q 001727 747 HESEEQIGNLETEVKALKESKEMIEDQMENQKSINE---DLDTQLTVAKAKLNEGFQKFSSLEVELEYRNNFCEELEATC 823 (1020)
Q Consensus 747 ~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~~---~Let~L~~~e~E~~el~~Ki~sLE~ELe~e~~~~eEl~AkC 823 (1020)
+..++.+..+...|.-+++.+..+-..+.....+|. .-......++.+++.+...+..+...+.+....++++....
T Consensus 302 ~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l 381 (560)
T PF06160_consen 302 KYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEEL 381 (560)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHH
Confidence 345556666666666777777777777777766661 11123345577788888888888899999999999999999
Q ss_pred HHHHHHhhhhccCCCCCCCCCccccccchhhhHHHHhhhHHHHHHHHHHHHHHHhhccCCc
Q 001727 824 LELQLQLESVAKREPPSYGVNQGEKQSQNGWEMTAASIKLAECQETILNLGKQLKALASPR 884 (1020)
Q Consensus 824 ~ELqeQLer~~~~~~~~~~~~~e~~~~k~e~EIaaAAeKLAECQETI~nLGKQLKALa~p~ 884 (1020)
.++.++|..+... .. ...+.-..+.. +=..|-++|..-+..|...-+.+.-..=|.
T Consensus 382 ~~~~~~l~~ie~~-q~--~~~~~l~~L~~--dE~~Ar~~l~~~~~~l~~ikR~lek~nLPG 437 (560)
T PF06160_consen 382 EEIEEQLEEIEEE-QE--EINESLQSLRK--DEKEAREKLQKLKQKLREIKRRLEKSNLPG 437 (560)
T ss_pred HHHHHHHHHHHHH-HH--HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 9999999877641 00 00001111221 124466888888888888888888777764
No 125
>PRK01156 chromosome segregation protein; Provisional
Probab=67.64 E-value=3.6e+02 Score=34.65 Aligned_cols=222 Identities=13% Similarity=0.145 Sum_probs=0.0
Q ss_pred hhhHHHHH-HHHHH-HhhccccccCCCCCceeecccCchhHHHHHHHHHHHhhhhcCCcccHHHHHHHHHHHHHHHHhhh
Q 001727 589 SDLSKSIC-KIIEL-IEGVNVTSSVSHPYSVHVFQWNPSELHAVLQKFVCACNDLLGGKADLDKFAEELSSALDWIMNNC 666 (1020)
Q Consensus 589 ~dls~si~-kI~~l-ie~~~~~~~~~~~~~v~~fq~k~sEL~~~Le~f~~~C~dvL~gka~le~f~~EL~~~L~wi~n~~ 666 (1020)
.|+...|. .|+.+ -..+...+..++|.+...+....++...+|.++. |-..+..+...+..++.++-.+
T Consensus 111 ~~~~~~i~~~il~~~~~~f~~~i~~~Qg~~~~l~~~~~~~r~~~ld~~~--------~~~~~~~~~~~~~~~~~~~~~e- 181 (895)
T PRK01156 111 DDTTKYIEKNILGISKDVFLNSIFVGQGEMDSLISGDPAQRKKILDEIL--------EINSLERNYDKLKDVIDMLRAE- 181 (895)
T ss_pred HHHHHHHHHHHcCCCHHHhceeEEEeccchHHHHhCCHHHHHHHHHHHh--------ChHHHHHHHHHHHHHHHHHHHH-
Q ss_pred ccccchhhhHHHHhhhcCCcccccccccccccccccccCcccccccccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 001727 667 IAHKDASRARNKVKKHFGLLVESNEVHIPEEQSSASLQGQNVLSQSNLQEENRRLRDELKSMAARLESATDRSEALVTQL 746 (1020)
Q Consensus 667 ~s~~d~s~~~d~i~k~f~~~~~~dkv~l~e~k~~c~~~~~~~~~q~~~~eE~e~Lk~ek~~le~~L~~~~~~~E~~~~ql 746 (1020)
.+.++.+...+.+++..|......+..+...+
T Consensus 182 ------------------------------------------------i~~le~~~~~l~~~e~eL~~~~~~i~el~~~~ 213 (895)
T PRK01156 182 ------------------------------------------------ISNIDYLEEKLKSSNLELENIKKQIADDEKSH 213 (895)
T ss_pred ------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhHHHHHHHHHHhHHHHHHHhhhh---hhhhhhHhHHHHHHHHHHH---------------------------
Q 001727 747 HESEEQIGNLETEVKALKESKEMIEDQMENQ---KSINEDLDTQLTVAKAKLN--------------------------- 796 (1020)
Q Consensus 747 ~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~---~~~~~~Let~L~~~e~E~~--------------------------- 796 (1020)
...+..+..+..++..++..-..++..++.. ...+..++.++..++.+++
T Consensus 214 ~~l~~~i~~~~~el~~~~~~l~~l~~~l~~l~~~~~~~~~~e~~i~ele~~l~el~~~~~el~~~~~~~~~l~~~~~~~~ 293 (895)
T PRK01156 214 SITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKN 293 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHH
Q ss_pred --------HhhhhhhhhHHHH---HHhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCccccccchhhhHHHHhhhHHH
Q 001727 797 --------EGFQKFSSLEVEL---EYRNNFCEELEATCLELQLQLESVAKREPPSYGVNQGEKQSQNGWEMTAASIKLAE 865 (1020)
Q Consensus 797 --------el~~Ki~sLE~EL---e~e~~~~eEl~AkC~ELqeQLer~~~~~~~~~~~~~e~~~~k~e~EIaaAAeKLAE 865 (1020)
.+...+..++.+| +.+....++...++.+++.....+. .....=.++...-..|+.
T Consensus 294 ~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~~e~~~~~~e~~~~~~~e~~-------------~~~~~~~~l~~~~~~l~~ 360 (895)
T PRK01156 294 RNYINDYFKYKNDIENKKQILSNIDAEINKYHAIIKKLSVLQKDYNDYI-------------KKKSRYDDLNNQILELEG 360 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhc
Q 001727 866 CQETILNLGKQLKAL 880 (1020)
Q Consensus 866 CQETI~nLGKQLKAL 880 (1020)
=-+++..|-++|..+
T Consensus 361 ~~~~~~~l~~~l~~~ 375 (895)
T PRK01156 361 YEMDYNSYLKSIESL 375 (895)
T ss_pred HHHHHHHHHHHHHHH
No 126
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=67.39 E-value=22 Score=31.89 Aligned_cols=41 Identities=24% Similarity=0.387 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 001727 725 LKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKE 765 (1020)
Q Consensus 725 k~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~ke 765 (1020)
+-.+...|..+....-.+..+|++++....+|..++..+++
T Consensus 13 kQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~ 53 (61)
T PF08826_consen 13 KQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKK 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667778888888888888999999999998888887544
No 127
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=67.31 E-value=93 Score=39.93 Aligned_cols=90 Identities=19% Similarity=0.170 Sum_probs=55.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhhhhHhHHHHHHH
Q 001727 713 NLQEENRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMIEDQMENQKSINEDLDTQLTVAK 792 (1020)
Q Consensus 713 ~~~eE~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~~~Let~L~~~e 792 (1020)
++.++-..++..+..+|.++..-..++-.+++.|++.|....-||.-++.+++.....++.|++...--..+ ..++-
T Consensus 82 vstqetriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~l---e~eLs 158 (1265)
T KOG0976|consen 82 VSTQETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKL---EDELS 158 (1265)
T ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---HHHHh
Confidence 455666777777777887776666666667777777777777777767666666666666666644222223 23333
Q ss_pred HHHHHhhhhhhhh
Q 001727 793 AKLNEGFQKFSSL 805 (1020)
Q Consensus 793 ~E~~el~~Ki~sL 805 (1020)
+..++.+.++..|
T Consensus 159 Ak~~eIf~~~~~L 171 (1265)
T KOG0976|consen 159 AKAHDIFMIGEDL 171 (1265)
T ss_pred hhhHHHHHHHHHH
Confidence 4445555544433
No 128
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=67.06 E-value=1.1e+02 Score=35.10 Aligned_cols=192 Identities=19% Similarity=0.210 Sum_probs=0.0
Q ss_pred cchhhhhhHHHHHHHHHhh----cCcchHHHHHHHHHHHhhhccCcchhhHHHHHHHHhhhhcCCCCcccCCCCCCCCCC
Q 001727 44 GSERSMKNLNEQLASVIFD----CHPKDELMAKQAKLVQEAGAGQEKPEVAAAVVKKELDETLKPPLSANENLPYAGAAT 119 (1020)
Q Consensus 44 ~~~~~~k~LnekLs~al~~----~~~Kd~lvkqhaKvaeEAv~GwEKae~E~~~lK~qLe~~~~~~~~~e~rv~hld~A~ 119 (1020)
.++..|.+.--+|++|+.+ .++|-|+=----..-.|=+.=++|.--++..|+-.-+-..++=..++-.+.-|..-
T Consensus 88 rLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~e- 166 (305)
T PF14915_consen 88 RLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIE- 166 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHH-
Q ss_pred ChhHHHHHhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHhhhhH
Q 001727 120 APMKCVKQLNFDQAEQEQRVHDAVVKTSGEFEKAQKELEKNLREANERIAKLAAENSHLSKALLVKEKMIEDLSKRKSQA 199 (1020)
Q Consensus 120 ~LKeCmrQLr~~rEEqEq~i~eav~~~s~e~ek~k~elE~kl~e~~~~l~~~~aEn~~Ls~al~~k~~~i~el~~~k~~a 199 (1020)
|+.+| |++..+|--+|.++.+|-.--.....-=.....|...+++.+
T Consensus 167 --------lh~tr--------daLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~----------------- 213 (305)
T PF14915_consen 167 --------LHHTR--------DALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYI----------------- 213 (305)
T ss_pred --------HHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-----------------
Q ss_pred hhHHHHHHhhhhhhHhhhhhhhhHHHHHHHHHhhhh-hhhhhhhhhHHHhhhhhhhhhHHHH-------hHHHHHHHHH
Q 001727 200 EAEFSTLMTRLDVTEKENAFLKYEFRILEKELEIRN-EEMEYTRRSVEATHKQHLESVKKVA-------KLEAECERLR 270 (1020)
Q Consensus 200 e~e~~~l~~rLe~~eKen~sLkyE~~~l~kELeiR~-~Ere~~~~sae~a~KQhlEsvKKia-------kLEaECqRLR 270 (1020)
+.-+.+..||--++.||+-|+-.|--..+.-.+.- .=.+.-.+-.|...+-|.++-|.+- .|-.||..||
T Consensus 214 -~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~Lk 291 (305)
T PF14915_consen 214 -GKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLK 291 (305)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
No 129
>PRK12704 phosphodiesterase; Provisional
Probab=66.81 E-value=2.7e+02 Score=34.16 Aligned_cols=31 Identities=29% Similarity=0.485 Sum_probs=15.6
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 001727 138 RVHDAVVKTSGEFEKAQKELEKNLREANERI 168 (1020)
Q Consensus 138 ~i~eav~~~s~e~ek~k~elE~kl~e~~~~l 168 (1020)
...++....-.|+.+.|.++|..+.+...+|
T Consensus 54 ~~ke~~leaeeE~~~~R~Ele~e~~~~e~~L 84 (520)
T PRK12704 54 IKKEALLEAKEEIHKLRNEFEKELRERRNEL 84 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555556655554444443
No 130
>PRK10884 SH3 domain-containing protein; Provisional
Probab=66.52 E-value=58 Score=35.29 Aligned_cols=25 Identities=16% Similarity=0.401 Sum_probs=15.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhh
Q 001727 714 LQEENRRLRDELKSMAARLESATDR 738 (1020)
Q Consensus 714 ~~eE~e~Lk~ek~~le~~L~~~~~~ 738 (1020)
..+.+.+|+.++.++..+|+....+
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4456666777766666666555443
No 131
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=66.29 E-value=1.4e+02 Score=39.43 Aligned_cols=17 Identities=29% Similarity=0.276 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHhhc
Q 001727 864 AECQETILNLGKQLKAL 880 (1020)
Q Consensus 864 AECQETI~nLGKQLKAL 880 (1020)
..||+-|-.+++||..+
T Consensus 563 d~n~~~~~~~~~~l~~~ 579 (1041)
T KOG0243|consen 563 DDNQEVIDDFQSQLSEN 579 (1041)
T ss_pred cccHHHHHHHhhhhhHH
Confidence 46888888888888543
No 132
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=66.21 E-value=75 Score=39.56 Aligned_cols=124 Identities=24% Similarity=0.308 Sum_probs=63.7
Q ss_pred CCCCCChhHHHHHhhhhhhhhH--HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHH
Q 001727 115 AGAATAPMKCVKQLNFDQAEQE--QRVHDAVVKTSGEFEKAQKELEKNLREANERIAKLAAENSHLSKALLVKEKMIEDL 192 (1020)
Q Consensus 115 ld~A~~LKeCmrQLr~~rEEqE--q~i~eav~~~s~e~ek~k~elE~kl~e~~~~l~~~~aEn~~Ls~al~~k~~~i~el 192 (1020)
+.|. .|.+|+.-..--+.+.| ..++..-... ...+..+..+...+.++..||.+|..-+.+..+.|.+|
T Consensus 385 IrG~-~l~eal~~~~e~~~p~e~~~~~~~e~~ei--------~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L 455 (652)
T COG2433 385 IRGY-PLAEALSKVKEEERPREKEGTEEEERREI--------TVYEKRIKKLEETVERLEEENSELKRELEELKREIEKL 455 (652)
T ss_pred ecCC-cHHHHHHHHHhhhccccccccccccccch--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4554 58888866554444222 2211111111 13445566666677777888887766554444444433
Q ss_pred HHhhhhHhhHHHHHHhhhhhhHhhhhhhhhHHH-HHHHHHhhhhhhhhhhhhhHHHhhhhhhhhhHHHHhHHHHHHHHHH
Q 001727 193 SKRKSQAEAEFSTLMTRLDVTEKENAFLKYEFR-ILEKELEIRNEEMEYTRRSVEATHKQHLESVKKVAKLEAECERLRL 271 (1020)
Q Consensus 193 ~~~k~~ae~e~~~l~~rLe~~eKen~sLkyE~~-~l~kELeiR~~Ere~~~~sae~a~KQhlEsvKKiakLEaECqRLR~ 271 (1020)
+.+...++++++ -..+..|||+-++.. +.-.|--.|.-++|..|+.+..+||.
T Consensus 456 ---------------------~~~l~~~~r~~~~~~~~~rei~~~~~~I-----~~L~~~L~e~~~~ve~L~~~l~~l~k 509 (652)
T COG2433 456 ---------------------ESELERFRREVRDKVRKDREIRARDRRI-----ERLEKELEEKKKRVEELERKLAELRK 509 (652)
T ss_pred ---------------------HHHHHHHHHHHHHHHhhhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333 123334444333322 22333344556778889999888887
Q ss_pred Hh
Q 001727 272 LV 273 (1020)
Q Consensus 272 lv 273 (1020)
|=
T Consensus 510 ~~ 511 (652)
T COG2433 510 MR 511 (652)
T ss_pred HH
Confidence 74
No 133
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=66.14 E-value=99 Score=38.74 Aligned_cols=84 Identities=23% Similarity=0.243 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhhhhHhHHHHHHHHHH
Q 001727 716 EENRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMIEDQMENQKSINEDLDTQLTVAKAKL 795 (1020)
Q Consensus 716 eE~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~~~Let~L~~~e~E~ 795 (1020)
|.+.+|.-.++-|.-..+--+++.++-.-...++|--|.+-+.+|.+ .|.+|...-.+..+||||.-.+-+|+
T Consensus 111 erLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLna-------tEEmLQqellsrtsLETqKlDLmaev 183 (861)
T KOG1899|consen 111 ERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNA-------TEEMLQQELLSRTSLETQKLDLMAEV 183 (861)
T ss_pred HHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhch-------HHHHHHHHHHhhhhHHHHHhHHHHHH
Confidence 44444555555554444444555544444455555555555555554 45555555555566666666666666
Q ss_pred HHhhhhhhhhH
Q 001727 796 NEGFQKFSSLE 806 (1020)
Q Consensus 796 ~el~~Ki~sLE 806 (1020)
-++.-|.-.||
T Consensus 184 SeLKLkltalE 194 (861)
T KOG1899|consen 184 SELKLKLTALE 194 (861)
T ss_pred HHhHHHHHHHH
Confidence 66666666665
No 134
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=65.86 E-value=1.8e+02 Score=33.39 Aligned_cols=79 Identities=32% Similarity=0.395 Sum_probs=42.8
Q ss_pred HHHHhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCccccccchhhhHHHHhhhHHHHH----HH
Q 001727 794 KLNEGFQKFSSLEVELEYRNNFCEELEATCLELQLQLESVAKREPPSYGVNQGEKQSQNGWEMTAASIKLAECQ----ET 869 (1020)
Q Consensus 794 E~~el~~Ki~sLE~ELe~e~~~~eEl~AkC~ELqeQLer~~~~~~~~~~~~~e~~~~k~e~EIaaAAeKLAECQ----ET 869 (1020)
+++.++.+|..+..+++..+...+++..+-.+|...++.... ++.....+|+.|-..+-+|+ .-
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~------------~k~e~~~~I~~ae~~~~~~r~~t~~E 272 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTN------------KKSELNTEIAEAEKKLEQCRGFTFKE 272 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 344444445555555555555555554444444444443332 34444566666666666775 23
Q ss_pred HHHHHHHHhhccCCc
Q 001727 870 ILNLGKQLKALASPR 884 (1020)
Q Consensus 870 I~nLGKQLKALa~p~ 884 (1020)
|..|..++..|....
T Consensus 273 i~~Lk~~~~~Le~l~ 287 (312)
T smart00787 273 IEKLKEQLKLLQSLT 287 (312)
T ss_pred HHHHHHHHHHHHHHh
Confidence 667777777665543
No 135
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=65.34 E-value=1.9e+02 Score=37.64 Aligned_cols=47 Identities=21% Similarity=0.297 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhhhhHhhHHHHHHhhhhhhHhhhhhhhhHHHHHHHH
Q 001727 184 VKEKMIEDLSKRKSQAEAEFSTLMTRLDVTEKENAFLKYEFRILEKE 230 (1020)
Q Consensus 184 ~k~~~i~el~~~k~~ae~e~~~l~~rLe~~eKen~sLkyE~~~l~kE 230 (1020)
+....|.+++++..++++..+.....+++++.|...|.-|+..++..
T Consensus 470 ~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~ 516 (980)
T KOG0980|consen 470 NLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRT 516 (980)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456667777777777777777777777777777777777777665
No 136
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=64.54 E-value=1.6e+02 Score=37.40 Aligned_cols=70 Identities=29% Similarity=0.378 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhhhhHhhHHHHHHhhhhhhHhhhhhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhhhhhhhhhHHHHhHHH
Q 001727 185 KEKMIEDLSKRKSQAEAEFSTLMTRLDVTEKENAFLKYEFRILEKELEIRNEEMEYTRRSVEATHKQHLESVKKVAKLEA 264 (1020)
Q Consensus 185 k~~~i~el~~~k~~ae~e~~~l~~rLe~~eKen~sLkyE~~~l~kELeiR~~Ere~~~~sae~a~KQhlEsvKKiakLEa 264 (1020)
+...+..++.-...+...+..|+..++..++..-.++..+.-..-||+|=. +|.-+||+
T Consensus 550 ~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~---------------------~k~~rleE 608 (698)
T KOG0978|consen 550 LTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEK---------------------FKRKRLEE 608 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHH
Confidence 333444444444455555666666666666666666666666555555532 35678999
Q ss_pred HHHHHHHHhhh
Q 001727 265 ECERLRLLVRK 275 (1020)
Q Consensus 265 ECqRLR~lvRK 275 (1020)
||-||+.-+..
T Consensus 609 E~e~L~~kle~ 619 (698)
T KOG0978|consen 609 ELERLKRKLER 619 (698)
T ss_pred HHHHHHHHHHH
Confidence 99999876644
No 137
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=64.29 E-value=4.2e+02 Score=34.31 Aligned_cols=97 Identities=19% Similarity=0.229 Sum_probs=44.2
Q ss_pred hhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhh
Q 001727 736 TDRSEALVTQLHESEEQIGNLETEVKALKESKEMIEDQMENQKSINEDLDTQLTVAKAKLNEGFQKFSSLEVELEYRNNF 815 (1020)
Q Consensus 736 ~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~~~Let~L~~~e~E~~el~~Ki~sLE~ELe~e~~~ 815 (1020)
.+.++..+.++.+....+..||++|.-..-+-..+-...-.....-..-++++.-++.+++..+.++.-|+.++.+-+.+
T Consensus 464 ~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~ 543 (775)
T PF10174_consen 464 QEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLRAN 543 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 34555556666666666666666665321111111111111111112234445555556666666666666666552222
Q ss_pred hHHHHHHHHHHHHHhhhh
Q 001727 816 CEELEATCLELQLQLESV 833 (1020)
Q Consensus 816 ~eEl~AkC~ELqeQLer~ 833 (1020)
.++-.++..|+-...++
T Consensus 544 -~e~~~r~~~Le~ev~~~ 560 (775)
T PF10174_consen 544 -AELRDRIQQLEQEVTRY 560 (775)
T ss_pred -HhhcchHHHHHHHHHHH
Confidence 34444555555444443
No 138
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=64.02 E-value=2.7e+02 Score=31.96 Aligned_cols=198 Identities=20% Similarity=0.222 Sum_probs=95.7
Q ss_pred hhhhhhHHHHHHHHHhhcCcchHHHHHHHHHHHhhhccCcchhhHHHHHHHHhhhhcCCCCcccCCCCCCCCCCChhHHH
Q 001727 46 ERSMKNLNEQLASVIFDCHPKDELMAKQAKLVQEAGAGQEKPEVAAAVVKKELDETLKPPLSANENLPYAGAATAPMKCV 125 (1020)
Q Consensus 46 ~~~~k~LnekLs~al~~~~~Kd~lvkqhaKvaeEAv~GwEKae~E~~~lK~qLe~~~~~~~~~e~rv~hld~A~~LKeCm 125 (1020)
+..-+.+++|+..+|.+|.++ +.+|. .--.+.-.|-..|...|...+.+ ++-|=.|++.---=++.-
T Consensus 102 e~kR~el~~kFq~~L~dIq~~---~ee~~-------~~~~k~~~eN~~L~eKlK~l~eQ---ye~rE~~~~~~~k~keLE 168 (309)
T PF09728_consen 102 EEKRKELSEKFQATLKDIQAQ---MEEQS-------ERNIKLREENEELREKLKSLIEQ---YELREEHFEKLLKQKELE 168 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHhcc-------chhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhHHHHH
Confidence 344578889999999998654 22222 11222444555566666666655 334444444441125666
Q ss_pred HHhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHhhhh-------
Q 001727 126 KQLNFDQAEQEQRVHDAVVKTSGEFEKAQKELEKNLREANERIAKLAAENSHLSKALLVKEKMIEDLSKRKSQ------- 198 (1020)
Q Consensus 126 rQLr~~rEEqEq~i~eav~~~s~e~ek~k~elE~kl~e~~~~l~~~~aEn~~Ls~al~~k~~~i~el~~~k~~------- 198 (1020)
.||..+|=++.+....+...+...... --|.++. ++..+...-..|..=|..=..-..++.+....
T Consensus 169 ~Ql~~AKl~q~~~~~~~e~~k~~~~~~------~~l~~~~-~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~t 241 (309)
T PF09728_consen 169 VQLAEAKLEQQQEEAEQEKEKAKQEKE------ILLEEAA-QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFET 241 (309)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH------HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 677777666555554444333332222 0011111 11111111111111111111111222222222
Q ss_pred HhhHHHHHHhhhhhhHhhhhhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhhhhhhhh-hHHHHhHHHHHHHHHH
Q 001727 199 AEAEFSTLMTRLDVTEKENAFLKYEFRILEKELEIRNEEMEYTRRSVEATHKQHLES-VKKVAKLEAECERLRL 271 (1020)
Q Consensus 199 ae~e~~~l~~rLe~~eKen~sLkyE~~~l~kELeiR~~Ere~~~~sae~a~KQhlEs-vKKiakLEaECqRLR~ 271 (1020)
-..++..+..++-.+||||..+|--.---.+-|=-=.+||.- ...+++. .+||.+||.=|+.|+.
T Consensus 242 fk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~--------~~~~~~~~~~k~~kLe~LcRaLQ~ 307 (309)
T PF09728_consen 242 FKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQK--------LEKELEKLKKKIEKLEKLCRALQA 307 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 234555667777888888888876554444443333333332 3334443 4578888888888763
No 139
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=63.78 E-value=2.8e+02 Score=32.94 Aligned_cols=34 Identities=18% Similarity=0.255 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHH
Q 001727 740 EALVTQLHESEEQIGNLETEVKALKESKEMIEDQ 773 (1020)
Q Consensus 740 E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Q 773 (1020)
+.+..+.....+.+..++.++..++.-...++.+
T Consensus 168 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 201 (457)
T TIGR01000 168 EAAEKTKAQLDQQISKTDQKLQDYQALKNAISNG 201 (457)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3555555666666666666666655555555554
No 140
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=62.92 E-value=1.1e+02 Score=30.81 Aligned_cols=96 Identities=24% Similarity=0.276 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhhhhHhHHHHHHHHH
Q 001727 715 QEENRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMIEDQMENQKSINEDLDTQLTVAKAK 794 (1020)
Q Consensus 715 ~eE~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~~~Let~L~~~e~E 794 (1020)
.--+++|.+.++-++..++..++.+..+..+-.++.+.|..|-.+...++... .++..++.+
T Consensus 15 ~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~------------------~~~~~L~~e 76 (120)
T PF12325_consen 15 VQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALK------------------KEVEELEQE 76 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHH
Confidence 45678888888888888888888777776666666666666555555433222 233334444
Q ss_pred HHHhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHH
Q 001727 795 LNEGFQKFSSLEVELEYRNNFCEELEATCLELQL 828 (1020)
Q Consensus 795 ~~el~~Ki~sLE~ELe~e~~~~eEl~AkC~ELqe 828 (1020)
+.++..+-.++=.=+-.+.-..+|+-+--.+|++
T Consensus 77 l~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 77 LEELQQRYQTLLELLGEKSEEVEELRADVQDLKE 110 (120)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 4444444333333333444444555555444443
No 141
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=62.38 E-value=3.3e+02 Score=32.38 Aligned_cols=62 Identities=13% Similarity=0.314 Sum_probs=37.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhhH--------HHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhh
Q 001727 714 LQEENRRLRDELKSMAARLESATDRSE--------ALVTQLHESEEQIGNLETEVKALKESKEMIEDQME 775 (1020)
Q Consensus 714 ~~eE~e~Lk~ek~~le~~L~~~~~~~E--------~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle 775 (1020)
...++.+++.++...+.+|..-..+.. .+..++...++.+..++.++..++..-..+..++.
T Consensus 166 l~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~ 235 (498)
T TIGR03007 166 IDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLG 235 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356777777887777777765543221 23455566666666666666665555555555554
No 142
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=62.29 E-value=90 Score=39.41 Aligned_cols=134 Identities=24% Similarity=0.210 Sum_probs=84.4
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHHHhhhhhhhhHH
Q 001727 728 MAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMIEDQMENQKSINEDLDTQLTVAKAKLNEGFQKFSSLEV 807 (1020)
Q Consensus 728 le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~~~Let~L~~~e~E~~el~~Ki~sLE~ 807 (1020)
......--..+...+..|+.+-+..|..+...|...++--.-++..-+++.++ +.+...+-.+|..
T Consensus 231 y~~E~n~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~--------------Lkes~~~qe~L~~ 296 (786)
T PF05483_consen 231 YKKEVNDKEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHEN--------------LKESNEEQEHLLQ 296 (786)
T ss_pred HHHHhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHhHHhHHHHHH
Confidence 33333333345556788888888888888888876655555555444444321 3334445566777
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCcccccc-chhhhHHHHhhhHHHHHHHHHHHHHHH
Q 001727 808 ELEYRNNFCEELEATCLELQLQLESVAKREPPSYGVNQGEKQS-QNGWEMTAASIKLAECQETILNLGKQL 877 (1020)
Q Consensus 808 ELe~e~~~~eEl~AkC~ELqeQLer~~~~~~~~~~~~~e~~~~-k~e~EIaaAAeKLAECQETI~nLGKQL 877 (1020)
||++=+.++++...+++-|+.+|+.....-.. ...+.+.++ -....-++-|.++++-|=||-+|--=|
T Consensus 297 eL~~~K~slq~~~~tq~~le~~lq~~~k~~~q--lt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL 365 (786)
T PF05483_consen 297 ELEDIKQSLQESESTQKALEEDLQQATKTLIQ--LTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKELL 365 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999976531000 000111111 112233556799999999999986433
No 143
>PF13514 AAA_27: AAA domain
Probab=62.21 E-value=5.1e+02 Score=34.50 Aligned_cols=50 Identities=22% Similarity=0.219 Sum_probs=34.5
Q ss_pred HHHHHHhhHHhHHHHHHHHhhhhhhhhHHHh--hhhhhhhhhhHHHHHHHHh
Q 001727 326 LLARLHDMEKENRTLKDIVITKSTELQASRM--MFSRTASRLSYVESQLREI 375 (1020)
Q Consensus 326 lt~rL~~~EeEnk~LKe~Lakkn~ELQ~sr~--m~a~taskLs~le~ql~~l 375 (1020)
+..++..++.+...|.+-++..+.+|+.... -|+.....+..+..+|...
T Consensus 901 l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~a~l~~e~e~~~a~l~~~ 952 (1111)
T PF13514_consen 901 LEEELEELEEELEELQEERAELEQELEALEGDDDAAELEQEREEAEAELEEL 952 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Confidence 6777778888888888888888888775432 3555555666666666654
No 144
>PF15294 Leu_zip: Leucine zipper
Probab=61.95 E-value=1.4e+02 Score=34.18 Aligned_cols=38 Identities=42% Similarity=0.587 Sum_probs=25.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 001727 714 LQEENRRLRDELKSMAARLESATDRSEALVTQLHESEE 751 (1020)
Q Consensus 714 ~~eE~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~ 751 (1020)
..+|++.|++.+..++..-..+-+....+..+|.++.-
T Consensus 137 Lq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 137 LQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777766666666666666666555
No 145
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=61.73 E-value=68 Score=30.41 Aligned_cols=48 Identities=23% Similarity=0.380 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHH
Q 001727 726 KSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMIEDQ 773 (1020)
Q Consensus 726 ~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Q 773 (1020)
..||.+++.|.|.+.-++..+.|...+=..|..+...+..+...++.+
T Consensus 7 eqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~e 54 (79)
T PRK15422 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERE 54 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 456677988889888888877777777777777777666666665554
No 146
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=61.50 E-value=66 Score=31.73 Aligned_cols=68 Identities=25% Similarity=0.292 Sum_probs=48.3
Q ss_pred HHHHHHhhhHHhHHHHHHHHHHHHHHHHhhhhHhhHHHHHHhhhhhhHhhhhhhhhHHHHHHHHHhhh
Q 001727 167 RIAKLAAENSHLSKALLVKEKMIEDLSKRKSQAEAEFSTLMTRLDVTEKENAFLKYEFRILEKELEIR 234 (1020)
Q Consensus 167 ~l~~~~aEn~~Ls~al~~k~~~i~el~~~k~~ae~e~~~l~~rLe~~eKen~sLkyE~~~l~kELeiR 234 (1020)
+..+++|.|+.|-+++.+=..--.+|.+..-.-++.+..+..-++++.=-|..|---|..|+.||++.
T Consensus 6 eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 6 EYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEES 73 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566777777777776666666667776666777777777777777777777777777777777744
No 147
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=60.98 E-value=2.8 Score=52.07 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=0.0
Q ss_pred hhhhhhHHHHhHHHHHHHHHHHh
Q 001727 251 QHLESVKKVAKLEAECERLRLLV 273 (1020)
Q Consensus 251 QhlEsvKKiakLEaECqRLR~lv 273 (1020)
.--+-+.+|..||++..+|+.=+
T Consensus 251 ~l~~ql~~i~~LE~en~~l~~El 273 (722)
T PF05557_consen 251 ELKEQLAHIRELEKENRRLREEL 273 (722)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344566677777777776544
No 148
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=60.21 E-value=2.3e+02 Score=36.11 Aligned_cols=120 Identities=24% Similarity=0.308 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhh-------hhhhhHhHHH
Q 001727 716 EENRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMIEDQMENQK-------SINEDLDTQL 788 (1020)
Q Consensus 716 eE~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~-------~~~~~Let~L 788 (1020)
-.+.-|..++..|++.++-.......+.......|.++..++.....+.+.-.....-++.++ ..-+.|-.++
T Consensus 496 q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ 575 (698)
T KOG0978|consen 496 QKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIEL 575 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666555544444444444444444444444444433333222222222222 2335566666
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHhhhhcc
Q 001727 789 TVAKAKLNEGFQKFSSLEVELEYRNNFCEELEATCLELQLQLESVAK 835 (1020)
Q Consensus 789 ~~~e~E~~el~~Ki~sLE~ELe~e~~~~eEl~AkC~ELqeQLer~~~ 835 (1020)
...++.+.++...+.-++.||+.++-.-.-+...|..|.-.|++..+
T Consensus 576 ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~ 622 (698)
T KOG0978|consen 576 EKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKK 622 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 77778888888888888888888876666677778888888888665
No 149
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=59.16 E-value=56 Score=29.86 Aligned_cols=63 Identities=21% Similarity=0.195 Sum_probs=40.2
Q ss_pred HHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 001727 749 SEEQIGNLETEVKALKESKEMIEDQMENQKSINEDLDTQLTVAKAKLNEGFQKFSSLEVELEY 811 (1020)
Q Consensus 749 ~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~~~Let~L~~~e~E~~el~~Ki~sLE~ELe~ 811 (1020)
+|..+..||..|..+-.-++..+.-++....-......+|..+-.+++++..++..|..||+.
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666555555555555555555455556677777888888888888888777654
No 150
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=58.74 E-value=93 Score=35.59 Aligned_cols=9 Identities=22% Similarity=0.619 Sum_probs=3.7
Q ss_pred HHHHHHHhh
Q 001727 657 SALDWIMNN 665 (1020)
Q Consensus 657 ~~L~wi~n~ 665 (1020)
..|.|++++
T Consensus 303 w~l~~~s~~ 311 (314)
T PF04111_consen 303 WLLAWVSSQ 311 (314)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 334444433
No 151
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=58.50 E-value=4e+02 Score=34.32 Aligned_cols=220 Identities=18% Similarity=0.218 Sum_probs=115.6
Q ss_pred hhHHHHHhhhhhhhhHH--HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHhhhh
Q 001727 121 PMKCVKQLNFDQAEQEQ--RVHDAVVKTSGEFEKAQKELEKNLREANERIAKLAAENSHLSKALLVKEKMIEDLSKRKSQ 198 (1020)
Q Consensus 121 LKeCmrQLr~~rEEqEq--~i~eav~~~s~e~ek~k~elE~kl~e~~~~l~~~~aEn~~Ls~al~~k~~~i~el~~~k~~ 198 (1020)
-.+-|.+++.+|-+-+- -.+......-++-+..+..+|.++.-+.+++..+-.||+....-....++-+.+=.-..-+
T Consensus 30 ~~e~e~~~~~ar~~~~~a~e~~~~lq~~~~e~~aqk~d~E~ritt~e~rflnaqre~t~~~d~ndklE~~Lankda~lrq 109 (916)
T KOG0249|consen 30 VPELEHSLPEARKDLIKAEEMNTKLQRDIREAMAQKEDMEERITTLEKRFLNAQRESTSIHDLNDKLENELANKDADLRQ 109 (916)
T ss_pred cHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhHHhhhcccccccchHHHHHHhccCCCCCcccchHHHHHHHhCcchhhch
Confidence 45556666666644322 1222222233455677778899999999999999999887665444333333222222223
Q ss_pred HhhHHHHHHhhhhhhHhhhh-hhhhH-HHHHHHHHhhhhhhhhhhhhhHHHhhhhhhhhhHHHHhHHHHHHHHHHHhhhc
Q 001727 199 AEAEFSTLMTRLDVTEKENA-FLKYE-FRILEKELEIRNEEMEYTRRSVEATHKQHLESVKKVAKLEAECERLRLLVRKK 276 (1020)
Q Consensus 199 ae~e~~~l~~rLe~~eKen~-sLkyE-~~~l~kELeiR~~Ere~~~~sae~a~KQhlEsvKKiakLEaECqRLR~lvRKk 276 (1020)
-+.....|+.||+-.|++.. +++.| +-.++-||.=|+. ++-+|+-.|-+-.-.+-||+.+.+||-+=+..
T Consensus 110 ~eekn~slqerLelaE~~l~qs~rae~lpeveael~qr~~-------al~~aee~~~~~eer~~kl~~~~qe~naeL~r- 181 (916)
T KOG0249|consen 110 NEEKNRSLQERLELAEPKLQQSLRAETLPEVEAELAQRNA-------ALTKAEEHSGNIEERTRKLEEQLEELNAELQR- 181 (916)
T ss_pred hHHhhhhhhHHHHHhhHhhHhHHhhhhhhhhHHHHHHHHH-------HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH-
Confidence 33334467777777776653 34432 2233445554443 33444555556667788888888888765543
Q ss_pred CCCchHHHhhHHHHHhhccchhhhhcccCCCCcccccccccCCCcch--hh-HHHHHHhhHHhHHHHHH--HHhhhhhhh
Q 001727 277 LPGSAASAKMKSEVEMQGRDQMDMRRRKLSPTRDLIVRHATTESSHD--IS-LLARLHDMEKENRTLKD--IVITKSTEL 351 (1020)
Q Consensus 277 lPgpAala~Mk~Eve~lg~d~~e~rrr~~~~~~~~~~~~~~~~~~~~--~~-lt~rL~~~EeEnk~LKe--~Lakkn~EL 351 (1020)
|-.+.+++-+. ..+.. +.+++ .- +-+|..++|+-|.-..+ .+.++-.++
T Consensus 182 -----arqreemneeh---------~~rls------------dtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~ 235 (916)
T KOG0249|consen 182 -----ARQREKMNEEH---------NKRLS------------DTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEM 235 (916)
T ss_pred -----HHHHHHhhhhh---------ccccc------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222332222 11111 11112 12 55666666655543322 223333444
Q ss_pred hHHHhhhhhhhhhhhHHHHHHHH
Q 001727 352 QASRMMFSRTASRLSYVESQLRE 374 (1020)
Q Consensus 352 Q~sr~m~a~taskLs~le~ql~~ 374 (1020)
+--+-....--++|.+...||..
T Consensus 236 ~~~k~rl~~d~E~Lr~e~~qL~~ 258 (916)
T KOG0249|consen 236 RHDKDKLRTDIEDLRGELDQLRR 258 (916)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 44555555566666666666663
No 152
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=58.30 E-value=21 Score=41.41 Aligned_cols=98 Identities=17% Similarity=0.296 Sum_probs=34.3
Q ss_pred hhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhh----hhhHhHHHHHHHHHHHHhhhhhhhhHHHHHHh
Q 001727 737 DRSEALVTQLHESEEQIGNLETEVKALKESKEMIEDQMENQKSI----NEDLDTQLTVAKAKLNEGFQKFSSLEVELEYR 812 (1020)
Q Consensus 737 ~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~----~~~Let~L~~~e~E~~el~~Ki~sLE~ELe~e 812 (1020)
+..+....++.++...+.+++.++..+++...-.-..++++... ..+|.+++..++..+..+...+..++..+...
T Consensus 91 e~~ek~~k~l~el~~~~~elkkEie~IKk~q~e~~~~i~~~~~~~~~~~~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~ 170 (370)
T PF02994_consen 91 EEKEKSIKELNELKKRIKELKKEIENIKKNQSEMKLEIENLKKKLENIDESLNSRIDELEERISELEDRIEEIEQAIKEL 170 (370)
T ss_dssp ---------------------------H-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHH
Confidence 33444555666777777888888887776555544455554432 23566677777766666666666666655555
Q ss_pred hhhhHHHHHHHHHHHHHhhhhc
Q 001727 813 NNFCEELEATCLELQLQLESVA 834 (1020)
Q Consensus 813 ~~~~eEl~AkC~ELqeQLer~~ 834 (1020)
...-..+..+|.||+....|.-
T Consensus 171 ~k~i~~l~~kl~DlEnrsRRnN 192 (370)
T PF02994_consen 171 EKRIKKLEDKLDDLENRSRRNN 192 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTE
T ss_pred HHHHHHHHHHHHHHHhhccCCc
Confidence 5555567788999998887744
No 153
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=57.85 E-value=95 Score=34.21 Aligned_cols=65 Identities=26% Similarity=0.277 Sum_probs=49.2
Q ss_pred HHHHhhhhhhhhhhHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHhhhhc
Q 001727 770 IEDQMENQKSINEDLDTQLTVAKAKLNEGFQKFSSLEVELEYRNNFCEELEATCLELQLQLESVA 834 (1020)
Q Consensus 770 ~E~Qle~~~~~~~~Let~L~~~e~E~~el~~Ki~sLE~ELe~e~~~~eEl~AkC~ELqeQLer~~ 834 (1020)
.+....+.++-...|++++.....+++.+..+...|....++-..-+--+...+..||+|+++..
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~~~ 213 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIESGG 213 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhccC
Confidence 33344444444455777777778888888888888888888888888788889999999999754
No 154
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=57.03 E-value=2.1e+02 Score=28.54 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHH
Q 001727 718 NRRLRDELKSMAARLESATDRSEAL 742 (1020)
Q Consensus 718 ~e~Lk~ek~~le~~L~~~~~~~E~~ 742 (1020)
+..+.......+..++...+.++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~dl~~q 36 (132)
T PF07926_consen 12 LQRLKEQEEDAEEQLQSLREDLESQ 36 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333443333333333
No 155
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=56.28 E-value=4.7e+02 Score=32.26 Aligned_cols=148 Identities=13% Similarity=0.199 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhhhhHhHHHHHHHHH
Q 001727 715 QEENRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMIEDQMENQKSINEDLDTQLTVAKAK 794 (1020)
Q Consensus 715 ~eE~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~~~Let~L~~~e~E 794 (1020)
.-+++.||...++|...+++|-.-.+ ..++++.+-..|+.....+.-+..-++...+.-...-+.|-......|.|
T Consensus 270 ~~~i~~lk~~n~~l~e~i~ea~k~s~----~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEee 345 (622)
T COG5185 270 NTDIANLKTQNDNLYEKIQEAMKISQ----KIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEE 345 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 35778888998999888877655332 34556666667777666555444444433333333345566666677899
Q ss_pred HHHhhhhhhhhHHHHHHhhhhhHHHHHHHH---HHHHHhhhhccCCCCCCCCCccccccchhhhHHHHhhhHHHHHHHHH
Q 001727 795 LNEGFQKFSSLEVELEYRNNFCEELEATCL---ELQLQLESVAKREPPSYGVNQGEKQSQNGWEMTAASIKLAECQETIL 871 (1020)
Q Consensus 795 ~~el~~Ki~sLE~ELe~e~~~~eEl~AkC~---ELqeQLer~~~~~~~~~~~~~e~~~~k~e~EIaaAAeKLAECQETI~ 871 (1020)
+..+..+++.|-..++++.-+-++.+---. +|--.|.++.. +.+ .++ +++ -+.=-|-|+.|-
T Consensus 346 i~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~---------~~~-~L~--k~V---~~~~leaq~~~~ 410 (622)
T COG5185 346 IKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINI---------QSD-KLT--KSV---KSRKLEAQGIFK 410 (622)
T ss_pred HHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcc---------hHH-HHH--HHH---HhHHHHHHHHHH
Confidence 999999999999999999877766643322 23333444332 000 111 111 122236688888
Q ss_pred HHHHHHhhcc
Q 001727 872 NLGKQLKALA 881 (1020)
Q Consensus 872 nLGKQLKALa 881 (1020)
+|-|-|+-+-
T Consensus 411 slek~~~~~~ 420 (622)
T COG5185 411 SLEKTLRQYD 420 (622)
T ss_pred HHHHHHHHHH
Confidence 8877665543
No 156
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=55.88 E-value=1.4e+02 Score=34.97 Aligned_cols=40 Identities=25% Similarity=0.289 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHhhhhcCCcccHHHHHHHHHHHHHHHHhh
Q 001727 626 ELHAVLQKFVCACNDLLGGKADLDKFAEELSSALDWIMNN 665 (1020)
Q Consensus 626 EL~~~Le~f~~~C~dvL~gka~le~f~~EL~~~L~wi~n~ 665 (1020)
.|...-++-..+...+-.-+..|.++..+++.+|+-|.+.
T Consensus 221 hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sR 260 (359)
T PF10498_consen 221 HLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESR 260 (359)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555666677778888999999999999988776
No 157
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=55.42 E-value=1.1e+02 Score=38.31 Aligned_cols=36 Identities=25% Similarity=0.312 Sum_probs=15.5
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhH
Q 001727 732 LESATDRSEALVTQLHESEEQIGNLETEVKALKESK 767 (1020)
Q Consensus 732 L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~ 767 (1020)
....+...+-+..|+.+..+.+...+.+++..+..+
T Consensus 189 ~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~ 224 (754)
T TIGR01005 189 SESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQS 224 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333333444444444444444444444444444433
No 158
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=55.17 E-value=1.5e+02 Score=35.23 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=18.8
Q ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHhhc
Q 001727 853 GWEMTAASIKLAECQETILNLGKQLKAL 880 (1020)
Q Consensus 853 e~EIaaAAeKLAECQETI~nLGKQLKAL 880 (1020)
+-+++++..+++..+..+..+..++..+
T Consensus 323 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 350 (498)
T TIGR03007 323 EAEIASLEARVAELTARIERLESLLRTI 350 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456666677777777777776666554
No 159
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.36 E-value=3.7e+02 Score=33.68 Aligned_cols=79 Identities=25% Similarity=0.275 Sum_probs=46.5
Q ss_pred HHHHhhhhhhHhhhhhhhhHHHHHHHHHh-hhh---------hhhhhhhhhHHHhhhhhhhhhHHHHhHHHHHHHHHHHh
Q 001727 204 STLMTRLDVTEKENAFLKYEFRILEKELE-IRN---------EEMEYTRRSVEATHKQHLESVKKVAKLEAECERLRLLV 273 (1020)
Q Consensus 204 ~~l~~rLe~~eKen~sLkyE~~~l~kELe-iR~---------~Ere~~~~sae~a~KQhlEsvKKiakLEaECqRLR~lv 273 (1020)
.+|+.+++.+|-+.-.+|.|+..+.+-|- .|+ +|++-+.=- |.|.| -..-+.||.+||+|...||.-+
T Consensus 46 ~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLq-ESaak-E~~yl~kI~eleneLKq~r~el 123 (772)
T KOG0999|consen 46 EDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQ-ESAAK-EEYYLQKILELENELKQLRQEL 123 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHH-HHHHh-HHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677777777777776665555442 222 233322211 22222 2345789999999999999875
Q ss_pred hhcCCCchHHHhhHHHHHhhc
Q 001727 274 RKKLPGSAASAKMKSEVEMQG 294 (1020)
Q Consensus 274 RKklPgpAala~Mk~Eve~lg 294 (1020)
+.-+.|.|++.
T Consensus 124 ----------~~~q~E~erl~ 134 (772)
T KOG0999|consen 124 ----------TNVQEENERLE 134 (772)
T ss_pred ----------HHHHHHHHHHH
Confidence 34455655543
No 160
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=53.75 E-value=48 Score=36.44 Aligned_cols=62 Identities=26% Similarity=0.417 Sum_probs=50.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhh
Q 001727 714 LQEENRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMIEDQME 775 (1020)
Q Consensus 714 ~~eE~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle 775 (1020)
..+|+..+++++..|+.++++-+..++....+-.++.++..+++.|-..+.+.++.+.+|++
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 35777788888888888888888888888888888888889988888888877777777764
No 161
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=53.58 E-value=2.6e+02 Score=31.00 Aligned_cols=83 Identities=18% Similarity=0.208 Sum_probs=41.8
Q ss_pred HhhhhHHHHHHHHHHHHHHHHH---HHHHHHhhhHHhHHHHHHHHHHHHHHHHhhhhHhhHHHHHHhhhhhhHhhhhhhh
Q 001727 145 KTSGEFEKAQKELEKNLREANE---RIAKLAAENSHLSKALLVKEKMIEDLSKRKSQAEAEFSTLMTRLDVTEKENAFLK 221 (1020)
Q Consensus 145 ~~s~e~ek~k~elE~kl~e~~~---~l~~~~aEn~~Ls~al~~k~~~i~el~~~k~~ae~e~~~l~~rLe~~eKen~sLk 221 (1020)
.++.+|++++.++=..+..+.. -|.+...|... -+++|...+.+|+ +..++++.|..-+...+-|....+
T Consensus 8 ~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~---L~~Er~~h~eeLr----qI~~DIn~lE~iIkqa~~er~~~~ 80 (230)
T PF10146_consen 8 NKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEE---LLQERMAHVEELR----QINQDINTLENIIKQAESERNKRQ 80 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666555544444332 33444444333 3556666665553 335555555555555555555555
Q ss_pred hHHHHHHHHHhhh
Q 001727 222 YEFRILEKELEIR 234 (1020)
Q Consensus 222 yE~~~l~kELeiR 234 (1020)
..+..+..|+.-.
T Consensus 81 ~~i~r~~eey~~L 93 (230)
T PF10146_consen 81 EKIQRLYEEYKPL 93 (230)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555444333
No 162
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=53.43 E-value=1e+02 Score=31.66 Aligned_cols=18 Identities=28% Similarity=0.514 Sum_probs=8.6
Q ss_pred HHHHHHHHHhhHHHHHHH
Q 001727 745 QLHESEEQIGNLETEVKA 762 (1020)
Q Consensus 745 ql~E~E~~i~~LqsEL~~ 762 (1020)
++.+.+..+..|+++|..
T Consensus 87 el~~l~~~~k~l~~eL~~ 104 (169)
T PF07106_consen 87 ELAELKKEVKSLEAELAS 104 (169)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444555555544
No 163
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=53.41 E-value=87 Score=30.05 Aligned_cols=30 Identities=37% Similarity=0.322 Sum_probs=24.9
Q ss_pred hHHHHHHhhhhhhHhhhhhhhhHHHHHHHH
Q 001727 201 AEFSTLMTRLDVTEKENAFLKYEFRILEKE 230 (1020)
Q Consensus 201 ~e~~~l~~rLe~~eKen~sLkyE~~~l~kE 230 (1020)
.....|..+|+.++++|..|.-+|..+.+|
T Consensus 80 ~~~~~L~~~l~~l~~eN~~L~~~i~~~r~e 109 (109)
T PF03980_consen 80 KEREQLNARLQELEEENEALAEEIQEQRKE 109 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 445678999999999999999998877654
No 164
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=53.13 E-value=1.9e+02 Score=31.97 Aligned_cols=48 Identities=17% Similarity=0.113 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHhhhhcc
Q 001727 788 LTVAKAKLNEGFQKFSSLEVELEYRNNFCEELEATCLELQLQLESVAK 835 (1020)
Q Consensus 788 L~~~e~E~~el~~Ki~sLE~ELe~e~~~~eEl~AkC~ELqeQLer~~~ 835 (1020)
|....+++|.+-.-|..++.|-++....-.-+..-|..|.+++.++-.
T Consensus 55 LrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~ 102 (230)
T PF10146_consen 55 LRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRK 102 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333345555555555555555554444444444456667777666554
No 165
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=52.81 E-value=1e+02 Score=28.22 Aligned_cols=56 Identities=23% Similarity=0.333 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHhHHH----HHHHHHHHHHHHHhhhhHhhHHHHHHhhhhhhHh
Q 001727 156 ELEKNLREANERIAKLAAENSHLSKA----LLVKEKMIEDLSKRKSQAEAEFSTLMTRLDVTEK 215 (1020)
Q Consensus 156 elE~kl~e~~~~l~~~~aEn~~Ls~a----l~~k~~~i~el~~~k~~ae~e~~~l~~rLe~~eK 215 (1020)
.||.||..+-.....+..||..|-.- -.+|..++.... .|-+.++.+-.||-++|-
T Consensus 4 ~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne----~Ar~rvEamI~RLk~leq 63 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNE----QARQKVEAMITRLKALEQ 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhhhcc
Confidence 58999999999999999999877543 345555555443 444555566677776653
No 166
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=52.57 E-value=1.7e+02 Score=34.13 Aligned_cols=36 Identities=17% Similarity=0.277 Sum_probs=18.0
Q ss_pred HHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHH
Q 001727 734 SATDRSEALVTQLHESEEQIGNLETEVKALKESKEM 769 (1020)
Q Consensus 734 ~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l 769 (1020)
.+....+-+..|+.+.++.+...+.+|...+..+.+
T Consensus 168 ~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i 203 (444)
T TIGR03017 168 PAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGI 203 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 333444444555555555555555555555544444
No 167
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=52.21 E-value=94 Score=35.68 Aligned_cols=87 Identities=21% Similarity=0.316 Sum_probs=64.3
Q ss_pred HHHHHHHhhhhHhhHHHHHHhhhhhhHhhhhhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhhhhhhhhhH-HHHhHHHHH
Q 001727 188 MIEDLSKRKSQAEAEFSTLMTRLDVTEKENAFLKYEFRILEKELEIRNEEMEYTRRSVEATHKQHLESVK-KVAKLEAEC 266 (1020)
Q Consensus 188 ~i~el~~~k~~ae~e~~~l~~rLe~~eKen~sLkyE~~~l~kELeiR~~Ere~~~~sae~a~KQhlEsvK-KiakLEaEC 266 (1020)
.+.+|+...+..|..|...|+-..-+..|-++|.|+|-.|...|+-..+..--..|-..--.+.+ |-.| .+..|..|+
T Consensus 78 s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~el-Er~K~~~d~L~~e~ 156 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIREL-ERQKRAHDSLREEL 156 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999988877655554444333332 2222 345555555
Q ss_pred HHHHHHhhh
Q 001727 267 ERLRLLVRK 275 (1020)
Q Consensus 267 qRLR~lvRK 275 (1020)
.-||.-++.
T Consensus 157 ~~Lre~L~~ 165 (302)
T PF09738_consen 157 DELREQLKQ 165 (302)
T ss_pred HHHHHHHHH
Confidence 556655543
No 168
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=51.88 E-value=1.4e+02 Score=32.62 Aligned_cols=49 Identities=20% Similarity=0.203 Sum_probs=31.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHH
Q 001727 714 LQEENRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKA 762 (1020)
Q Consensus 714 ~~eE~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~ 762 (1020)
+.+.+.++.+++..|..++.....+++.+..+....+..+.+.+.++..
T Consensus 40 sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~ 88 (251)
T PF11932_consen 40 SQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELAS 88 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666666666666666666666666666665
No 169
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=51.68 E-value=3.5e+02 Score=29.42 Aligned_cols=128 Identities=18% Similarity=0.179 Sum_probs=65.9
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHh--hhhHhhHHHHHHhh
Q 001727 132 QAEQEQRVHDAVVKTSGEFEKAQKELEKNLREANERIAKLAAENSHLSKALLVKEKMIEDLSKR--KSQAEAEFSTLMTR 209 (1020)
Q Consensus 132 rEEqEq~i~eav~~~s~e~ek~k~elE~kl~e~~~~l~~~~aEn~~Ls~al~~k~~~i~el~~~--k~~ae~e~~~l~~r 209 (1020)
-++=||+|..+-..- .+|..-...++.+|.....+...+...-+.....+++=.+.+..+... ..-+++.+..|.++
T Consensus 80 ~~eLeq~l~~~~~~L-~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae 158 (240)
T PF12795_consen 80 LEELEQRLSQEQAQL-QELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAE 158 (240)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHH
Confidence 345566666655543 345555556666677666666555555444444333222222211000 12223334444444
Q ss_pred hhhhHhhhhhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhhhhhhhhhHHHHhHHHHHHHHHHHhh
Q 001727 210 LDVTEKENAFLKYEFRILEKELEIRNEEMEYTRRSVEATHKQHLESVKKVAKLEAECERLRLLVR 274 (1020)
Q Consensus 210 Le~~eKen~sLkyE~~~l~kELeiR~~Ere~~~~sae~a~KQhlEsvKKiakLEaECqRLR~lvR 274 (1020)
+....-++..|.-|+.....= -|.+..|.=.-.++|..|+.+.+-|+.++-
T Consensus 159 ~~~l~~~~~~le~el~s~~~r--------------q~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln 209 (240)
T PF12795_consen 159 LAALEAQIEMLEQELLSNNNR--------------QELLQLQRDLLKARIQRLQQQLQALQNLLN 209 (240)
T ss_pred HHHHHHHHHHHHHHHHCcHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444333322 234445555567789999999999998873
No 170
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=50.91 E-value=5.6e+02 Score=31.53 Aligned_cols=29 Identities=28% Similarity=0.535 Sum_probs=13.5
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 001727 140 HDAVVKTSGEFEKAQKELEKNLREANERI 168 (1020)
Q Consensus 140 ~eav~~~s~e~ek~k~elE~kl~e~~~~l 168 (1020)
.++....-.++...+.++|..+.+...+|
T Consensus 50 ke~~~EaeeE~~~~R~Ele~el~~~e~rL 78 (514)
T TIGR03319 50 KEALLEAKEEVHKLRAELERELKERRNEL 78 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333555555555555544444443
No 171
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=50.71 E-value=3.3e+02 Score=29.41 Aligned_cols=39 Identities=21% Similarity=0.190 Sum_probs=22.2
Q ss_pred HHhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHhhhhc
Q 001727 796 NEGFQKFSSLEVELEYRNNFCEELEATCLELQLQLESVA 834 (1020)
Q Consensus 796 ~el~~Ki~sLE~ELe~e~~~~eEl~AkC~ELqeQLer~~ 834 (1020)
......+..|+.++..-+.....+..+..+|+.+|+.+.
T Consensus 95 ~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k 133 (219)
T TIGR02977 95 QKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEAR 133 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555666666666666666666666666666543
No 172
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=50.27 E-value=6.4e+02 Score=31.99 Aligned_cols=129 Identities=24% Similarity=0.184 Sum_probs=76.3
Q ss_pred hhHHHHHHHHHHhHHHHHHHhhhhhhhhhhHhHHHHHHHHH----HHHhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHH
Q 001727 754 GNLETEVKALKESKEMIEDQMENQKSINEDLDTQLTVAKAK----LNEGFQKFSSLEVELEYRNNFCEELEATCLELQLQ 829 (1020)
Q Consensus 754 ~~LqsEL~~~keS~~l~E~Qle~~~~~~~~Let~L~~~e~E----~~el~~Ki~sLE~ELe~e~~~~eEl~AkC~ELqeQ 829 (1020)
..|+.+....++-++.++..+..+-....+-..++.+++.. +.-.+..|+.+=.+|++-.+.-..++..|-.|..|
T Consensus 185 ~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~q 264 (629)
T KOG0963|consen 185 AGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQ 264 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666666666655555555555555443 55555556777777888777777888888888888
Q ss_pred hhhhccCCCCC---CCCCccccccchhhhHHH-----------HhhhHHHHHHHHHHHHHHHhhccC
Q 001727 830 LESVAKREPPS---YGVNQGEKQSQNGWEMTA-----------ASIKLAECQETILNLGKQLKALAS 882 (1020)
Q Consensus 830 Ler~~~~~~~~---~~~~~e~~~~k~e~EIaa-----------AAeKLAECQETI~nLGKQLKALa~ 882 (1020)
+.....+.... ......-+-.+.|++|+- -++-++..-.+|..|-+||++..+
T Consensus 265 l~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~ 331 (629)
T KOG0963|consen 265 LAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKIS 331 (629)
T ss_pred HHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88765421111 111111122334666642 224445566788888888887654
No 173
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=50.15 E-value=88 Score=33.32 Aligned_cols=80 Identities=20% Similarity=0.265 Sum_probs=53.1
Q ss_pred HHHhhhhhhHhhhhhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhhhhhhhhhHHHHhHHHHHHHHHHHhhh-cCCCchHH
Q 001727 205 TLMTRLDVTEKENAFLKYEFRILEKELEIRNEEMEYTRRSVEATHKQHLESVKKVAKLEAECERLRLLVRK-KLPGSAAS 283 (1020)
Q Consensus 205 ~l~~rLe~~eKen~sLkyE~~~l~kELeiR~~Ere~~~~sae~a~KQhlEsvKKiakLEaECqRLR~lvRK-klPgpAal 283 (1020)
.+..+++.+.+++..++.++..+..+|+.-..+|+-+ -...+-+.++..|+.++.+|+.-+.+ .--.|..+
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~--------~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i 137 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES--------EEREELLEELEELKKELKELKKELEKYSENDPEKI 137 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 4556666666666666666666777776666666554 33344566677777777777766652 22468899
Q ss_pred HhhHHHHHh
Q 001727 284 AKMKSEVEM 292 (1020)
Q Consensus 284 a~Mk~Eve~ 292 (1020)
.+|+.++..
T Consensus 138 ~~~~~~~~~ 146 (188)
T PF03962_consen 138 EKLKEEIKI 146 (188)
T ss_pred HHHHHHHHH
Confidence 999998766
No 174
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=49.89 E-value=3.7e+02 Score=29.10 Aligned_cols=20 Identities=35% Similarity=0.390 Sum_probs=16.3
Q ss_pred hhhHHHHhHHHHHHHHHHHh
Q 001727 254 ESVKKVAKLEAECERLRLLV 273 (1020)
Q Consensus 254 EsvKKiakLEaECqRLR~lv 273 (1020)
--..|+.+||-||.||.++=
T Consensus 117 ~klekLe~LE~E~~rLt~~Q 136 (178)
T PF14073_consen 117 AKLEKLEKLEKEYLRLTATQ 136 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34579999999999998763
No 175
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=49.55 E-value=68 Score=32.97 Aligned_cols=11 Identities=36% Similarity=0.265 Sum_probs=5.0
Q ss_pred cHHHHHHHHHH
Q 001727 714 LQEENRRLRDE 724 (1020)
Q Consensus 714 ~~eE~e~Lk~e 724 (1020)
+.+|+..|..+
T Consensus 70 s~eel~~ld~e 80 (169)
T PF07106_consen 70 SPEELAELDAE 80 (169)
T ss_pred CchhHHHHHHH
Confidence 34444444444
No 176
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.29 E-value=5.6e+02 Score=32.13 Aligned_cols=17 Identities=29% Similarity=0.522 Sum_probs=10.7
Q ss_pred hhhhhhHHHhhhhhhhh
Q 001727 239 EYTRRSVEATHKQHLES 255 (1020)
Q Consensus 239 e~~~~sae~a~KQhlEs 255 (1020)
+-|.++|..-|||++|-
T Consensus 474 dqnkkvaNlkHk~q~Ek 490 (654)
T KOG4809|consen 474 DQNKKVANLKHKQQLEK 490 (654)
T ss_pred hhhhHHhhHHHHHHHHH
Confidence 44566666667777664
No 177
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=49.11 E-value=2.9e+02 Score=27.85 Aligned_cols=63 Identities=24% Similarity=0.427 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhh
Q 001727 716 EENRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMIEDQMENQK 778 (1020)
Q Consensus 716 eE~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~ 778 (1020)
+-.+.|......+..++..-+...+.++.++.+++..+..++.....++.....++..++..+
T Consensus 52 ~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~k 114 (151)
T PF11559_consen 52 EQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEK 114 (151)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555666666666666666666666666666666666665555555554444444
No 178
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=49.00 E-value=1.1e+02 Score=27.93 Aligned_cols=39 Identities=18% Similarity=0.229 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHH
Q 001727 151 EKAQKELEKNLREANERIAKLAAENSHLSKALLVKEKMIEDL 192 (1020)
Q Consensus 151 ek~k~elE~kl~e~~~~l~~~~aEn~~Ls~al~~k~~~i~el 192 (1020)
+.....|..+|.-+..++.....+|..|++ +|+..+..|
T Consensus 4 ea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~---ERd~~~~~l 42 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTRKNSVHEIENKRLRR---ERDSAERQL 42 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 334456677777777777766677666553 455444433
No 179
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=48.53 E-value=2.4e+02 Score=34.43 Aligned_cols=63 Identities=25% Similarity=0.347 Sum_probs=43.1
Q ss_pred hhhHHhHHHHHHHHHHHHHHHHhhhhHhhHHHHHHhhhhhhHhhhhhhhhHHHHHHHHHhhhhhhh
Q 001727 173 AENSHLSKALLVKEKMIEDLSKRKSQAEAEFSTLMTRLDVTEKENAFLKYEFRILEKELEIRNEEM 238 (1020)
Q Consensus 173 aEn~~Ls~al~~k~~~i~el~~~k~~ae~e~~~l~~rLe~~eKen~sLkyE~~~l~kELeiR~~Er 238 (1020)
..-..+.++|-.|+.=|..|..-|..+| +++..-|+-+.+|--..-.||..|+.|+.=|-.|+
T Consensus 446 sqclEmdk~LskKeeeverLQ~lkgelE---kat~SALdlLkrEKe~~EqefLslqeEfQk~eken 508 (527)
T PF15066_consen 446 SQCLEMDKTLSKKEEEVERLQQLKGELE---KATTSALDLLKREKETREQEFLSLQEEFQKHEKEN 508 (527)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344456677777777777777776666 34556666666777777778888888888776654
No 180
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=48.21 E-value=4e+02 Score=29.03 Aligned_cols=75 Identities=21% Similarity=0.237 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHhhhhHhhHHHHHHhhhhhhHhhhhhhhhHHHH
Q 001727 148 GEFEKAQKELEKNLREANERIAKLAAENSHLSKALLVKEKMIEDLSKRKSQAEAEFSTLMTRLDVTEKENAFLKYEFRI 226 (1020)
Q Consensus 148 ~e~ek~k~elE~kl~e~~~~l~~~~aEn~~Ls~al~~k~~~i~el~~~k~~ae~e~~~l~~rLe~~eKen~sLkyE~~~ 226 (1020)
.+.+.+-..+..++.++..+|..-..+...|-.-|+ .+.++...+..-+.+|.+|...+..++.+.+....+++.
T Consensus 36 ~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq----~l~~~~~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~ 110 (206)
T PF14988_consen 36 RERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQ----ALKEFRRLKEQQEREIQTLEEELEKMRAEHAEKLQEAES 110 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555666666666666666666555444443 566666666666777766666666666666655554443
No 181
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=48.12 E-value=1.1e+02 Score=36.71 Aligned_cols=37 Identities=27% Similarity=0.382 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 001727 715 QEENRRLRDELKSMAARLESATDRSEALVTQLHESEE 751 (1020)
Q Consensus 715 ~eE~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~ 751 (1020)
.+++..|+.+++.++..++.+.+++..+..++.-.+.
T Consensus 70 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 106 (525)
T TIGR02231 70 PERLAELRKQIRELEAELRDLEDRGDALKALAKFLED 106 (525)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888888888877777666654444
No 182
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=48.09 E-value=3.1e+02 Score=27.70 Aligned_cols=8 Identities=50% Similarity=0.771 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 001727 263 EAECERLR 270 (1020)
Q Consensus 263 EaECqRLR 270 (1020)
|-|..+|+
T Consensus 139 e~E~~kLk 146 (151)
T PF11559_consen 139 EREIEKLK 146 (151)
T ss_pred HHHHHHHH
Confidence 33444443
No 183
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=47.80 E-value=3.9e+02 Score=28.87 Aligned_cols=120 Identities=23% Similarity=0.276 Sum_probs=70.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhhH----HHHHHH-------HHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhh
Q 001727 713 NLQEENRRLRDELKSMAARLESATDRSE----ALVTQL-------HESEEQIGNLETEVKALKESKEMIEDQMENQKSIN 781 (1020)
Q Consensus 713 ~~~eE~e~Lk~ek~~le~~L~~~~~~~E----~~~~ql-------~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~ 781 (1020)
+..+.|.+|+.|....+..+..-....- .+.... .+..+.-..+.++|.++.--=+++|.||+.|.-+-
T Consensus 8 ~LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~~qL~aAEtRCslLEKQLeyMRkmv 87 (178)
T PF14073_consen 8 NLQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQNQDLSSQLSAAETRCSLLEKQLEYMRKMV 87 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777776555554433322211 111111 12223355788899999888999999999998665
Q ss_pred hhHhHHHHHH-------HH-------HHHHhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHhhh
Q 001727 782 EDLDTQLTVA-------KA-------KLNEGFQKFSSLEVELEYRNNFCEELEATCLELQLQLES 832 (1020)
Q Consensus 782 ~~Let~L~~~-------e~-------E~~el~~Ki~sLE~ELe~e~~~~eEl~AkC~ELqeQLer 832 (1020)
..-+..-+.+ +. ++..-..|..-||.|--+=.+...=++.|-.+|+++|.-
T Consensus 88 ~~ae~er~~~le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~e 152 (178)
T PF14073_consen 88 ESAEKERNAVLEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQSLAETKIKELEEKLQE 152 (178)
T ss_pred HHHHHhhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443222211 22 223333556667767666666666677788888888864
No 184
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.66 E-value=2.1e+02 Score=26.85 Aligned_cols=46 Identities=24% Similarity=0.396 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHH
Q 001727 726 KSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMIE 771 (1020)
Q Consensus 726 ~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E 771 (1020)
+.||.+++-|.+.+.-+.....|+..+-.+|+.+...++.....++
T Consensus 7 ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~ 52 (79)
T COG3074 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALE 52 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHH
Confidence 4566668888887776777666666666666666665555544444
No 185
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=46.54 E-value=7.2e+02 Score=33.64 Aligned_cols=57 Identities=16% Similarity=0.055 Sum_probs=38.9
Q ss_pred hhhhHHHHHHHHHhhhhhhhhhhhhhHHHhhhhhhhhhHHHHhHHHHHHHHHHHhhh
Q 001727 219 FLKYEFRILEKELEIRNEEMEYTRRSVEATHKQHLESVKKVAKLEAECERLRLLVRK 275 (1020)
Q Consensus 219 sLkyE~~~l~kELeiR~~Ere~~~~sae~a~KQhlEsvKKiakLEaECqRLR~lvRK 275 (1020)
.|+-|...+.-+++-...|..=+..--|.+..|+-.--++|..||++.+.|+..+-.
T Consensus 177 ~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~ 233 (1109)
T PRK10929 177 ALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNS 233 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444455566778888888889999999999999987743
No 186
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=46.49 E-value=1.5e+02 Score=27.38 Aligned_cols=58 Identities=24% Similarity=0.368 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHHHhhhhhhhhHHHH
Q 001727 745 QLHESEEQIGNLETEVKALKESKEMIEDQMENQKSINEDLDTQLTVAKAKLNEGFQKFSSLEVEL 809 (1020)
Q Consensus 745 ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~~~Let~L~~~e~E~~el~~Ki~sLE~EL 809 (1020)
.+.|-...|+.|..|-..|-.......+.|+.-. .+...++..+..+..++..++.++
T Consensus 6 ~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr-------~~~~e~e~~~~~l~~~~~~~e~~~ 63 (74)
T PF12329_consen 6 KLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLR-------AKIKELEKQIKELKKKLEELEKEL 63 (74)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677777766665444444444444433 333333444444444444443333
No 187
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=45.66 E-value=3.3e+02 Score=35.82 Aligned_cols=94 Identities=17% Similarity=0.219 Sum_probs=64.3
Q ss_pred cchhhhhhHHHHHHHHHhhc---------CcchHHHHHHH----HHHHhhhccCcch-----hhHHHHHHHHhhhhcCCC
Q 001727 44 GSERSMKNLNEQLASVIFDC---------HPKDELMAKQA----KLVQEAGAGQEKP-----EVAAAVVKKELDETLKPP 105 (1020)
Q Consensus 44 ~~~~~~k~LnekLs~al~~~---------~~Kd~lvkqha----KvaeEAv~GwEKa-----e~E~~~lK~qLe~~~~~~ 105 (1020)
+....++.|-.+...-+++. --|+..++++. ||+.||-.|.-|+ |+|--.||++|+.....+
T Consensus 1026 d~~~r~~el~~rq~~el~~~~~~~~~~e~e~k~~hl~~~~~~l~kl~~eaq~~Q~k~LK~~~e~e~kElk~~l~kkr~e~ 1105 (1189)
T KOG1265|consen 1026 DNAGRVRELVNRQTQELLEMRREQYEEEFELKEEHLKEQISLLRKLLSEAQTNQTKALKESLEKETKELKKKLDKKRMED 1105 (1189)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555566655554444432 23566666654 8889998888776 677788999998887766
Q ss_pred CcccCCCCCCCCCCChhHHHHHhhhhhhhhHHHHHHHHHHh
Q 001727 106 LSANENLPYAGAATAPMKCVKQLNFDQAEQEQRVHDAVVKT 146 (1020)
Q Consensus 106 ~~~e~rv~hld~A~~LKeCmrQLr~~rEEqEq~i~eav~~~ 146 (1020)
... |.- .|.=+++-|.+||=...-|.+.|..+
T Consensus 1106 ik~-------~~~--~kdK~e~er~~rE~n~s~i~~~V~e~ 1137 (1189)
T KOG1265|consen 1106 IKV-------DKV--IKDKAERERRKRELNSSNIKEFVEER 1137 (1189)
T ss_pred hhh-------ccc--cccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 644 444 67777888888888888787777654
No 188
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=45.58 E-value=2.7e+02 Score=31.91 Aligned_cols=33 Identities=18% Similarity=0.130 Sum_probs=16.0
Q ss_pred hHHHHHHhhhhhhHhhhhhhhhHHHHHHHHHhh
Q 001727 201 AEFSTLMTRLDVTEKENAFLKYEFRILEKELEI 233 (1020)
Q Consensus 201 ~e~~~l~~rLe~~eKen~sLkyE~~~l~kELei 233 (1020)
.+...+...-+..-++.+.+++++....+|++.
T Consensus 85 ~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~s 117 (314)
T PF04111_consen 85 EELEELDEEEEEYWREYNELQLELIEFQEERDS 117 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444445555555555555555443
No 189
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=45.38 E-value=5.1e+02 Score=31.76 Aligned_cols=43 Identities=14% Similarity=0.154 Sum_probs=26.3
Q ss_pred HHHHHhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHhhhhcc
Q 001727 793 AKLNEGFQKFSSLEVELEYRNNFCEELEATCLELQLQLESVAK 835 (1020)
Q Consensus 793 ~E~~el~~Ki~sLE~ELe~e~~~~eEl~AkC~ELqeQLer~~~ 835 (1020)
.+++++...+..+..-..+-....+++.....+++.+|.....
T Consensus 301 ~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~ 343 (563)
T TIGR00634 301 ERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDD 343 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhC
Confidence 3344444555555444445555667777778888888887553
No 190
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=45.28 E-value=2.8e+02 Score=26.51 Aligned_cols=32 Identities=19% Similarity=0.162 Sum_probs=14.9
Q ss_pred hhhhHhHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 001727 780 INEDLDTQLTVAKAKLNEGFQKFSSLEVELEY 811 (1020)
Q Consensus 780 ~~~~Let~L~~~e~E~~el~~Ki~sLE~ELe~ 811 (1020)
+..+.++-...++..++.+...|..|+..+++
T Consensus 57 v~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~ 88 (105)
T cd00632 57 VKQEKEEARTELKERLETIELRIKRLERQEED 88 (105)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444443
No 191
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=45.26 E-value=3.3e+02 Score=27.18 Aligned_cols=46 Identities=22% Similarity=0.223 Sum_probs=33.0
Q ss_pred hHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHH
Q 001727 783 DLDTQLTVAKAKLNEGFQKFSSLEVELEYRNNFCEELEATCLELQL 828 (1020)
Q Consensus 783 ~Let~L~~~e~E~~el~~Ki~sLE~ELe~e~~~~eEl~AkC~ELqe 828 (1020)
+++.....++..++.+...+..|+..|.+-+...+.+...-.+|+.
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~ 136 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQ 136 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888888888888888888888777766555444444433
No 192
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=45.05 E-value=4.5e+02 Score=33.47 Aligned_cols=62 Identities=19% Similarity=0.208 Sum_probs=39.1
Q ss_pred HHhhhHHhHHHHH---HHHHHHHHHHHhhhhHhhHHHHHHhhhhhhHhhhhhhhhHHHHHHHHHh
Q 001727 171 LAAENSHLSKALL---VKEKMIEDLSKRKSQAEAEFSTLMTRLDVTEKENAFLKYEFRILEKELE 232 (1020)
Q Consensus 171 ~~aEn~~Ls~al~---~k~~~i~el~~~k~~ae~e~~~l~~rLe~~eKen~sLkyE~~~l~kELe 232 (1020)
...++..|...+- .....+..|..........+..|+.++..++++...|++++.-+.++++
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~ 272 (670)
T KOG0239|consen 208 AQEERRVLADSLGNYADLRRNIKPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQ 272 (670)
T ss_pred hHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444322 3344455555555555566777888888888888888888777777764
No 193
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=44.89 E-value=3.6e+02 Score=36.87 Aligned_cols=19 Identities=16% Similarity=0.392 Sum_probs=10.4
Q ss_pred ccCCccccccccccccCCC
Q 001727 880 LASPREAVLFDKVFSTTNP 898 (1020)
Q Consensus 880 La~p~e~~lfDk~~stt~~ 898 (1020)
+.+.+.-.++|..++.-.+
T Consensus 1274 ~~~~p~lilLDEp~a~lD~ 1292 (1353)
T TIGR02680 1274 YPHAPRLILLDEAFAGVDD 1292 (1353)
T ss_pred cCCCCCEEEEeCccccCCH
Confidence 4344445677877755333
No 194
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=44.14 E-value=7.5 Score=49.59 Aligned_cols=157 Identities=19% Similarity=0.271 Sum_probs=0.0
Q ss_pred hHHHHHHHHhhhhcCCCCcccCCCCCCCCCCChhHHHHHhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 001727 89 VAAAVVKKELDETLKPPLSANENLPYAGAATAPMKCVKQLNFDQAEQEQRVHDAVVKTSGEFEKAQKELEKNLREANERI 168 (1020)
Q Consensus 89 ~E~~~lK~qLe~~~~~~~~~e~rv~hld~A~~LKeCmrQLr~~rEEqEq~i~eav~~~s~e~ek~k~elE~kl~e~~~~l 168 (1020)
.++..++.+|+++-...-..|+.+-.|... |-.+|-+.+++|. .+--+++..|..+..+|..+...|
T Consensus 468 ~e~~El~~~leE~E~~l~~~E~~~lRl~~e---------l~~~r~e~er~l~----eKeeE~E~~Rr~~qr~l~~le~~L 534 (859)
T PF01576_consen 468 QEKEELQEQLEEAEDALEAEEQKKLRLQVE---------LQQLRQEIERELQ----EKEEEFEETRRNHQRQLESLEAEL 534 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH----hhhhHHHHHHHhhHHHHHHHHhHH
Confidence 344444444444444444444444444444 3444444444444 233556666666666666666555
Q ss_pred HHHHhhhHHhHHHHHHHHHHHHHHHHhhhhHhhHHHHHHhhhhhhHhhhhhhhhHHHHHHHHHhhhhhhhhhhhhhHHHh
Q 001727 169 AKLAAENSHLSKALLVKEKMIEDLSKRKSQAEAEFSTLMTRLDVTEKENAFLKYEFRILEKELEIRNEEMEYTRRSVEAT 248 (1020)
Q Consensus 169 ~~~~aEn~~Ls~al~~k~~~i~el~~~k~~ae~e~~~l~~rLe~~eKen~sLkyE~~~l~kELeiR~~Ere~~~~sae~a 248 (1020)
. .|-..- .++...|-..+.++.+|...|+...+.+..+.-.+.-++..|.=-..+.+-..++.+.+
T Consensus 535 E---~E~k~r-----------~~~~r~kkKLE~~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~ 600 (859)
T PF01576_consen 535 E---EERKER-----------AEALREKKKLESDLNELEIQLDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREEL 600 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred H---HHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 2 222222 22333444556777777888887777777766665555544443334444455555555
Q ss_pred hhhhhhhhHHHHhHHHHHHHHHHH
Q 001727 249 HKQHLESVKKVAKLEAECERLRLL 272 (1020)
Q Consensus 249 ~KQhlEsvKKiakLEaECqRLR~l 272 (1020)
.-+...+=+++.-|++|.-+|+..
T Consensus 601 ~~~~~~~e~r~~~l~~elee~~~~ 624 (859)
T PF01576_consen 601 REQLAVSERRLRALQAELEELREA 624 (859)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555566666666666666543
No 195
>KOG3215 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.07 E-value=2.2e+02 Score=31.39 Aligned_cols=105 Identities=27% Similarity=0.221 Sum_probs=70.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhhhhHhHHHHHHHH
Q 001727 714 LQEENRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMIEDQMENQKSINEDLDTQLTVAKA 793 (1020)
Q Consensus 714 ~~eE~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~~~Let~L~~~e~ 793 (1020)
+.-|++.+...+.+++..++.+...++.++.|+++++.- .-=+.+-.++-+. +..+-. ...-+..+..+..
T Consensus 87 nlre~e~~~q~k~Eiersi~~a~~kie~lkkql~eaKi~-r~nrqe~~~l~kv---is~~p~-----RsEt~k~l~el~k 157 (222)
T KOG3215|consen 87 NLREIENLVQKKLEIERSIQKARNKIELLKKQLHEAKIV-RLNRQEYSALSKV---ISDCPA-----RSETDKDLNELKK 157 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHH---HhcCCC-----cchhHHHHHHHHH
Confidence 456788888888999999999999999999999998862 2222333332222 111110 0112233445566
Q ss_pred HHHHhhhhhhhhHHHHHHhhhhhHHHHHHHHHHH
Q 001727 794 KLNEGFQKFSSLEVELEYRNNFCEELEATCLELQ 827 (1020)
Q Consensus 794 E~~el~~Ki~sLE~ELe~e~~~~eEl~AkC~ELq 827 (1020)
++.++..--.+++.-|+.+|..-.-+...-.+||
T Consensus 158 eleel~~~~~s~~~klelrRkqf~~lm~~~~elQ 191 (222)
T KOG3215|consen 158 ELEELDDLNNSTETKLELRRKQFKYLMVSTEELQ 191 (222)
T ss_pred HHHHHHHHhhhhHHHHHHHhhcchHHHhhHHHHH
Confidence 6777776667888888888887777777777777
No 196
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=44.01 E-value=3.2e+02 Score=30.15 Aligned_cols=106 Identities=13% Similarity=0.191 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHH-HHhHHHHHHHhhhhhhhhhhHhHHHHHHHHH
Q 001727 716 EENRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKAL-KESKEMIEDQMENQKSINEDLDTQLTVAKAK 794 (1020)
Q Consensus 716 eE~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~-keS~~l~E~Qle~~~~~~~~Let~L~~~e~E 794 (1020)
.+|++||.....+|..|..|.......+..+..+-+.-...|.|+..| +....=.-.-|+.-+.+|++= -..+..
T Consensus 32 s~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK~sWs~~DleRFT~Lyr~d----H~~e~~ 107 (207)
T PF05546_consen 32 SEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRKHSWSPADLERFTELYRND----HENEQA 107 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhh----hhhHHH
Confidence 579999999999999999999999888888888888888888888643 332221333444455555310 011333
Q ss_pred HHHhhhhhhhhHHHHHHh-hhhhHHHHHHHHH
Q 001727 795 LNEGFQKFSSLEVELEYR-NNFCEELEATCLE 825 (1020)
Q Consensus 795 ~~el~~Ki~sLE~ELe~e-~~~~eEl~AkC~E 825 (1020)
..++..++...|...+.. .....-++.+|.|
T Consensus 108 e~~ak~~l~~aE~~~e~~~~~L~~~Il~RYHE 139 (207)
T PF05546_consen 108 EEEAKEALEEAEEKVEEAFDDLMRAILTRYHE 139 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444433 3445566777776
No 197
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=43.72 E-value=7.2e+02 Score=30.70 Aligned_cols=157 Identities=20% Similarity=0.254 Sum_probs=96.4
Q ss_pred chhHHHHHHHHHHHhhhhcCCcccHHHHHHHHHHHHHHHHhhhccccchhhhHHHHhhhcCCcccccccccccccccccc
Q 001727 624 PSELHAVLQKFVCACNDLLGGKADLDKFAEELSSALDWIMNNCIAHKDASRARNKVKKHFGLLVESNEVHIPEEQSSASL 703 (1020)
Q Consensus 624 ~sEL~~~Le~f~~~C~dvL~gka~le~f~~EL~~~L~wi~n~~~s~~d~s~~~d~i~k~f~~~~~~dkv~l~e~k~~c~~ 703 (1020)
-.+|...++.++..=|.|.--|.++++-..-|-.||.-+-.| .--. ..
T Consensus 364 inkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~-----------------LqEs-----------r~---- 411 (527)
T PF15066_consen 364 INKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKH-----------------LQES-----------RN---- 411 (527)
T ss_pred HHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHH-----------------HHHH-----------Hh----
Confidence 345677777777777777777777777666666666544443 1100 00
Q ss_pred cCcccccccccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhhhh
Q 001727 704 QGQNVLSQSNLQEENRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMIEDQMENQKSINED 783 (1020)
Q Consensus 704 ~~~~~~~q~~~~eE~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~~~ 783 (1020)
. ..+..=+++++|..-.-|..+-.--..+-..+..|+-|++..|..-.-++..++--++.+| +.
T Consensus 412 e------KetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ~lkgelE----------ka 475 (527)
T PF15066_consen 412 E------KETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQQLKGELE----------KA 475 (527)
T ss_pred h------HHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH----------HH
Confidence 0 0112334555555555555554433444445677888999999888888888887777777 22
Q ss_pred HhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHhh
Q 001727 784 LDTQLTVAKAKLNEGFQKFSSLEVELEYRNNFCEELEATCLELQLQLE 831 (1020)
Q Consensus 784 Let~L~~~e~E~~el~~Ki~sLE~ELe~e~~~~eEl~AkC~ELqeQLe 831 (1020)
.-+.|..+..|-+.--|.+.+|-+|+++... +.++--++|+-.|+
T Consensus 476 t~SALdlLkrEKe~~EqefLslqeEfQk~ek---enl~ERqkLKs~le 520 (527)
T PF15066_consen 476 TTSALDLLKREKETREQEFLSLQEEFQKHEK---ENLEERQKLKSRLE 520 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHH
Confidence 3345666778888888899999999988632 22333344444444
No 198
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=43.37 E-value=4e+02 Score=27.66 Aligned_cols=100 Identities=24% Similarity=0.317 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH--------HHHHHHhhhHHhHHHHHHHHHHHHHHHHhhhhHhhHHHHHHhhhhhhHhhhhhhhhHHHH
Q 001727 155 KELEKNLREANE--------RIAKLAAENSHLSKALLVKEKMIEDLSKRKSQAEAEFSTLMTRLDVTEKENAFLKYEFRI 226 (1020)
Q Consensus 155 ~elE~kl~e~~~--------~l~~~~aEn~~Ls~al~~k~~~i~el~~~k~~ae~e~~~l~~rLe~~eKen~sLkyE~~~ 226 (1020)
..++.+|..... .+..+..||..|..-+.+|..=+..|+..-..+-..+.....+|..+..++..++.++..
T Consensus 23 ~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~ 102 (177)
T PF13870_consen 23 AKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKD 102 (177)
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhhhhhhhhhhhHHHhhhhhhh
Q 001727 227 LEKELEIRNEEMEYTRRSVEATHKQHLE 254 (1020)
Q Consensus 227 l~kELeiR~~Ere~~~~sae~a~KQhlE 254 (1020)
..+++.=.-.+...-..--+.+.+++.+
T Consensus 103 ~~~~~~~~r~~l~~~k~~r~k~~~~~~~ 130 (177)
T PF13870_consen 103 REEELAKLREELYRVKKERDKLRKQNKK 130 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 199
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=43.20 E-value=5.2e+02 Score=29.90 Aligned_cols=109 Identities=18% Similarity=0.212 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHHH
Q 001727 718 NRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMIEDQMENQKSINEDLDTQLTVAKAKLNE 797 (1020)
Q Consensus 718 ~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~~~Let~L~~~e~E~~e 797 (1020)
|..|+.-++.|--+-+-=+=.++.+..-|+-..++..+-+.+..+++..|.-+-... .+|+..-..+..++..
T Consensus 20 IqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c-------~~lek~rqKlshdlq~ 92 (307)
T PF10481_consen 20 IQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESC-------ENLEKTRQKLSHDLQV 92 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHH-------HHHHHHHHHhhHHHhh
Confidence 344444443333333333334445545555555555666666666555544433222 3344444445555555
Q ss_pred hhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHhhhh
Q 001727 798 GFQKFSSLEVELEYRNNFCEELEATCLELQLQLESV 833 (1020)
Q Consensus 798 l~~Ki~sLE~ELe~e~~~~eEl~AkC~ELqeQLer~ 833 (1020)
--++|..||..|..=+..-+-+.....-++.+|||.
T Consensus 93 Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErs 128 (307)
T PF10481_consen 93 KESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERS 128 (307)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666555555555555555555566653
No 200
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=43.14 E-value=4.1e+02 Score=35.49 Aligned_cols=67 Identities=30% Similarity=0.287 Sum_probs=35.1
Q ss_pred HHHHhHHHHHHHhhhhhhhhhhHhHHHHHHHHH---HHHhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHhh
Q 001727 762 ALKESKEMIEDQMENQKSINEDLDTQLTVAKAK---LNEGFQKFSSLEVELEYRNNFCEELEATCLELQLQLE 831 (1020)
Q Consensus 762 ~~keS~~l~E~Qle~~~~~~~~Let~L~~~e~E---~~el~~Ki~sLE~ELe~e~~~~eEl~AkC~ELqeQLe 831 (1020)
.+++-..+++.+|.+...--+++.+.+..++.. -+..+++...+|..|.+. -.++-..|.+.+.-+.
T Consensus 480 ~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~---a~~l~~~~~~s~~d~s 549 (1041)
T KOG0243|consen 480 LLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDR---ATKLRRSLEESQDDLS 549 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 555555566666655554444455555544433 334455566666666665 1244444555555444
No 201
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=43.07 E-value=1.2e+02 Score=31.07 Aligned_cols=52 Identities=25% Similarity=0.261 Sum_probs=28.0
Q ss_pred HhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHhhhhcc
Q 001727 784 LDTQLTVAKAKLNEGFQKFSSLEVELEYRNNFCEELEATCLELQLQLESVAK 835 (1020)
Q Consensus 784 Let~L~~~e~E~~el~~Ki~sLE~ELe~e~~~~eEl~AkC~ELqeQLer~~~ 835 (1020)
|+.+|.....-++.+...|...|..++....+.+++..+|+.++-++..-..
T Consensus 32 LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~ 83 (160)
T PF13094_consen 32 LERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEK 83 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334443344444444445555556666666666666666666666555443
No 202
>PRK11519 tyrosine kinase; Provisional
Probab=42.84 E-value=3.2e+02 Score=34.50 Aligned_cols=44 Identities=20% Similarity=0.348 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHH
Q 001727 727 SMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMI 770 (1020)
Q Consensus 727 ~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~ 770 (1020)
.++.+...+...++=+..|+.+.++.+...+..|+..+..+.++
T Consensus 257 ~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~v 300 (719)
T PRK11519 257 NIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSV 300 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34445555556666667777777777777777777666666553
No 203
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=42.71 E-value=4.3e+02 Score=36.09 Aligned_cols=86 Identities=16% Similarity=0.267 Sum_probs=62.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhhhhHhHHHHHHHH
Q 001727 714 LQEENRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMIEDQMENQKSINEDLDTQLTVAKA 793 (1020)
Q Consensus 714 ~~eE~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~~~Let~L~~~e~ 793 (1020)
..+-++.+|.....+.-.++++...++..+.+..|.|+.+......+.-...+..-++..+... ..|+++...+..
T Consensus 207 ~l~~lk~~K~~~e~~~l~i~~~~~ki~~~ke~v~e~e~e~~~~~~~i~ei~~~~~el~k~~~~~----~~l~~e~~~l~~ 282 (1294)
T KOG0962|consen 207 ELEHLKTLKERAEVLRLNIHSGQRKIEKSKEEVSELENELGPIEAKIEEIEKSLKELEKLLKQV----KLLDSEHKNLKK 282 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 3577888888889999999999999999999999999998888888876666666555443322 234555555555
Q ss_pred HHHHhhhhhh
Q 001727 794 KLNEGFQKFS 803 (1020)
Q Consensus 794 E~~el~~Ki~ 803 (1020)
++..+..+|.
T Consensus 283 ~~~~l~~~i~ 292 (1294)
T KOG0962|consen 283 QISRLREKIL 292 (1294)
T ss_pred HHHHHHhhcc
Confidence 6666655555
No 204
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=42.60 E-value=2.1e+02 Score=33.10 Aligned_cols=81 Identities=15% Similarity=0.286 Sum_probs=55.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHhhhhHhhHHHHHHhhhhhhHhhhhhhhhHHHHH
Q 001727 148 GEFEKAQKELEKNLREANERIAKLAAENSHLSKALLVKEKMIEDLSKRKSQAEAEFSTLMTRLDVTEKENAFLKYEFRIL 227 (1020)
Q Consensus 148 ~e~ek~k~elE~kl~e~~~~l~~~~aEn~~Ls~al~~k~~~i~el~~~k~~ae~e~~~l~~rLe~~eKen~sLkyE~~~l 227 (1020)
.+.+.++.-.|.++.++.-.|.++-.|-+---.-+..|++-| ..++..|++..-.+.-+.+.+||-....
T Consensus 230 ~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI~SREK~l----------NnqL~~l~q~fr~a~~~lse~~e~y~q~ 299 (384)
T KOG0972|consen 230 EQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKIASREKSL----------NNQLASLMQKFRRATDTLSELREKYKQA 299 (384)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455778888888888888888887777654333344555544 4666777777777777777788776666
Q ss_pred HHHHhhhhhhh
Q 001727 228 EKELEIRNEEM 238 (1020)
Q Consensus 228 ~kELeiR~~Er 238 (1020)
+.-++=|+++.
T Consensus 300 ~~gv~~rT~~L 310 (384)
T KOG0972|consen 300 SVGVSSRTETL 310 (384)
T ss_pred cccHHHHHHHH
Confidence 66666665543
No 205
>PRK12704 phosphodiesterase; Provisional
Probab=42.40 E-value=4.7e+02 Score=32.23 Aligned_cols=35 Identities=11% Similarity=0.115 Sum_probs=15.5
Q ss_pred hhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 001727 130 FDQAEQEQRVHDAVVKTSGEFEKAQKELEKNLREA 164 (1020)
Q Consensus 130 ~~rEEqEq~i~eav~~~s~e~ek~k~elE~kl~e~ 164 (1020)
.++.+-+..+.++..+.-.+...++.+.+.++.+.
T Consensus 35 ~Ae~eAe~I~keA~~eAke~~ke~~leaeeE~~~~ 69 (520)
T PRK12704 35 EAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKL 69 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555444344444444444333333
No 206
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.34 E-value=1.6e+02 Score=27.69 Aligned_cols=41 Identities=24% Similarity=0.297 Sum_probs=29.3
Q ss_pred HHHHHHhhhhHhhHHHHHHhhhhhhHhhhhhhhhHHHHHHH
Q 001727 189 IEDLSKRKSQAEAEFSTLMTRLDVTEKENAFLKYEFRILEK 229 (1020)
Q Consensus 189 i~el~~~k~~ae~e~~~l~~rLe~~eKen~sLkyE~~~l~k 229 (1020)
|.||++.......+...++...+.++.||..||.|-+.-++
T Consensus 27 ieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQe 67 (79)
T COG3074 27 IEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQE 67 (79)
T ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444556667788889999999999998777654
No 207
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=42.12 E-value=4.2e+02 Score=31.20 Aligned_cols=109 Identities=17% Similarity=0.207 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHH---------HHHHhH-HHHHHHhhhhhhhhhhHhHHHHH
Q 001727 721 LRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVK---------ALKESK-EMIEDQMENQKSINEDLDTQLTV 790 (1020)
Q Consensus 721 Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~---------~~keS~-~l~E~Qle~~~~~~~~Let~L~~ 790 (1020)
|+..+.++...+......++.+..-+.+.+..+.-.++-|. .+.+.- -.+-.++..-......|..+|..
T Consensus 263 Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev~~l~~~i~~L~~~L~~ 342 (384)
T PF03148_consen 263 LEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGLIEEVKELRESIEALQEKLDE 342 (384)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555555555555543 111111 01112233344555777888888
Q ss_pred HHHHHHHhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHH
Q 001727 791 AKAKLNEGFQKFSSLEVELEYRNNFCEELEATCLELQLQ 829 (1020)
Q Consensus 791 ~e~E~~el~~Ki~sLE~ELe~e~~~~eEl~AkC~ELqeQ 829 (1020)
+++.++.|..-...||.+|..+.+...=...+|..+-..
T Consensus 343 a~~~l~~L~~~~~~Le~di~~K~~sL~iD~~~c~~~R~~ 381 (384)
T PF03148_consen 343 AEASLQKLERTRLRLEEDIAVKNNSLFIDRERCMQLRRR 381 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcc
Confidence 888888888888888888888887776666688776443
No 208
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.02 E-value=3.5e+02 Score=33.06 Aligned_cols=95 Identities=16% Similarity=0.111 Sum_probs=48.3
Q ss_pred hhHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHhhhhccCCCCCCC-----CCccccccchhhhH
Q 001727 782 EDLDTQLTVAKAKLNEGFQKFSSLEVELEYRNNFCEELEATCLELQLQLESVAKREPPSYG-----VNQGEKQSQNGWEM 856 (1020)
Q Consensus 782 ~~Let~L~~~e~E~~el~~Ki~sLE~ELe~e~~~~eEl~AkC~ELqeQLer~~~~~~~~~~-----~~~e~~~~k~e~EI 856 (1020)
..|-+++...+.+-.+ +.+|.-||-+|+.-...++-.+--+..|--.|++.+...+ ..+ -+-.+..-+++-+|
T Consensus 328 l~Lr~~l~~~e~e~~e-~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~-rk~ytqrikEi~gniRKq~~DI 405 (521)
T KOG1937|consen 328 LQLREELKNLETEDEE-IRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQ-RKVYTQRIKEIDGNIRKQEQDI 405 (521)
T ss_pred HHHHHHHhcccchHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhH-HHHHHHHHHHHHhHHHHHHHHH
Confidence 4444455555555555 5556666666655443333111122334445555443111 000 01122334566667
Q ss_pred HHHhhhHHHHHHHHHHHHHHHh
Q 001727 857 TAASIKLAECQETILNLGKQLK 878 (1020)
Q Consensus 857 aaAAeKLAECQETI~nLGKQLK 878 (1020)
..-.+-=-|-|+-+-++|-+|.
T Consensus 406 ~Kil~etreLqkq~ns~se~L~ 427 (521)
T KOG1937|consen 406 VKILEETRELQKQENSESEALN 427 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 7666666777888888887775
No 209
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=42.00 E-value=3.2e+02 Score=34.62 Aligned_cols=45 Identities=16% Similarity=0.317 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHH
Q 001727 726 KSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMI 770 (1020)
Q Consensus 726 ~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~ 770 (1020)
..++.+...+...++=+..|+.+.++.+...+.+|+..+..+.++
T Consensus 256 ~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~ 300 (726)
T PRK09841 256 QNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSV 300 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 345556666666666777777777777777777777766666443
No 210
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=41.88 E-value=5.2e+02 Score=28.60 Aligned_cols=86 Identities=16% Similarity=0.211 Sum_probs=37.5
Q ss_pred HHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhhhhHhHHHHHH-----HHHHHHhhhhhhhhHHHHHHhhhhhHHHHH
Q 001727 747 HESEEQIGNLETEVKALKESKEMIEDQMENQKSINEDLDTQLTVA-----KAKLNEGFQKFSSLEVELEYRNNFCEELEA 821 (1020)
Q Consensus 747 ~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~~~Let~L~~~-----e~E~~el~~Ki~sLE~ELe~e~~~~eEl~A 821 (1020)
.+++..+..++..+..+--....++.++.........|+.+...+ +.=+.++...+-+||..+........+...
T Consensus 34 rd~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~ 113 (225)
T COG1842 34 RDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEE 113 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444443333 223333444444444444444444444444
Q ss_pred HHHHHHHHhhh
Q 001727 822 TCLELQLQLES 832 (1020)
Q Consensus 822 kC~ELqeQLer 832 (1020)
.-..|+.++..
T Consensus 114 ~~~~l~~~~~~ 124 (225)
T COG1842 114 QVEKLKKQLAA 124 (225)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 211
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=41.44 E-value=4.2e+02 Score=31.35 Aligned_cols=89 Identities=20% Similarity=0.210 Sum_probs=50.8
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 001727 732 LESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMIEDQMENQKSINEDLDTQLTVAKAKLNEGFQKFSSLEVELEY 811 (1020)
Q Consensus 732 L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~~~Let~L~~~e~E~~el~~Ki~sLE~ELe~ 811 (1020)
+..-+.+.+.++.|.+.+-.++--++.=+.-.+-...-+|+-+-...+-|..|+-+|.++..+.++....--+|--||.+
T Consensus 94 ~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE 173 (401)
T PF06785_consen 94 VEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAE 173 (401)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 33334444455555555555555555544444555555566666666666666666776666666666666666666666
Q ss_pred hhhhhHHHH
Q 001727 812 RNNFCEELE 820 (1020)
Q Consensus 812 e~~~~eEl~ 820 (1020)
..++-+++.
T Consensus 174 ~layqq~L~ 182 (401)
T PF06785_consen 174 ALAYQQELN 182 (401)
T ss_pred HHHHHHHHH
Confidence 655555543
No 212
>PRK10698 phage shock protein PspA; Provisional
Probab=41.10 E-value=5.2e+02 Score=28.32 Aligned_cols=35 Identities=17% Similarity=0.199 Sum_probs=19.2
Q ss_pred hhhhhhHHHHHHhhhhhHHHHHHHHHHHHHhhhhc
Q 001727 800 QKFSSLEVELEYRNNFCEELEATCLELQLQLESVA 834 (1020)
Q Consensus 800 ~Ki~sLE~ELe~e~~~~eEl~AkC~ELqeQLer~~ 834 (1020)
.++..|+.+++........+......|+.+|+...
T Consensus 99 ~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak 133 (222)
T PRK10698 99 DLIATLEHEVTLVDETLARMKKEIGELENKLSETR 133 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555433
No 213
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=40.95 E-value=8.3e+02 Score=30.68 Aligned_cols=122 Identities=21% Similarity=0.245 Sum_probs=87.1
Q ss_pred hhhhhHhhhhhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhhhhhhhhhHHHHhHHHHHHHHHHHhhhcCCCchHH----H
Q 001727 209 RLDVTEKENAFLKYEFRILEKELEIRNEEMEYTRRSVEATHKQHLESVKKVAKLEAECERLRLLVRKKLPGSAAS----A 284 (1020)
Q Consensus 209 rLe~~eKen~sLkyE~~~l~kELeiR~~Ere~~~~sae~a~KQhlEsvKKiakLEaECqRLR~lvRKklPgpAal----a 284 (1020)
+|..+..-...--|+|.....||.==..+-+|+-. -+.+.|.-...|+.|.||.=|.|..+ .
T Consensus 263 ~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~--------------~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~ 328 (557)
T COG0497 263 KLSELAELLEEALYELEEASEELRAYLDELEFDPN--------------RLEEVEERLFALKSLARKYGVTIEDLLEYLD 328 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHH--------------HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 44444555555667777777776655555555422 24667888999999999998876555 4
Q ss_pred hhHHHHHhhccchhhhhcccCCCCcccccccccCCCcchhhHHHHHHhhHHhHHHHHHHHhhhhhhhhHHHhhhhhhhhh
Q 001727 285 KMKSEVEMQGRDQMDMRRRKLSPTRDLIVRHATTESSHDISLLARLHDMEKENRTLKDIVITKSTELQASRMMFSRTASR 364 (1020)
Q Consensus 285 ~Mk~Eve~lg~d~~e~rrr~~~~~~~~~~~~~~~~~~~~~~lt~rL~~~EeEnk~LKe~Lakkn~ELQ~sr~m~a~task 364 (1020)
+|+.|...|-. .-+.+..++.+-+.|++-+-+....|-..|..+|+.-.+
T Consensus 329 ~~~~el~~L~~------------------------------~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~L~~ 378 (557)
T COG0497 329 KIKEELAQLDN------------------------------SEESLEALEKEVKKLKAELLEAAEALSAIRKKAAKELEK 378 (557)
T ss_pred HHHHHHHHhhh------------------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666555321 235577889999999999999999999999999998776
Q ss_pred hhHHHHHHHHhh
Q 001727 365 LSYVESQLREIC 376 (1020)
Q Consensus 365 Ls~le~ql~~ls 376 (1020)
.|..+|+.|.
T Consensus 379 --~v~~eL~~L~ 388 (557)
T COG0497 379 --EVTAELKALA 388 (557)
T ss_pred --HHHHHHHhcC
Confidence 5777777664
No 214
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=40.77 E-value=1e+03 Score=31.74 Aligned_cols=99 Identities=24% Similarity=0.332 Sum_probs=67.9
Q ss_pred hhhHHhHHHHHHHHHHHHHHHHhhhhHhhHHHHHHhhhhhhHhhhhhhhhHHHHH---------HHHHhhhhhhhhhhhh
Q 001727 173 AENSHLSKALLVKEKMIEDLSKRKSQAEAEFSTLMTRLDVTEKENAFLKYEFRIL---------EKELEIRNEEMEYTRR 243 (1020)
Q Consensus 173 aEn~~Ls~al~~k~~~i~el~~~k~~ae~e~~~l~~rLe~~eKen~sLkyE~~~l---------~kELeiR~~Ere~~~~ 243 (1020)
.+...|.-.|..|++-|.+|+...----.+++.++.|++-.||..+++..+..-. +-+..+|-.|++|. .
T Consensus 948 edaegL~~tle~re~eikeLkk~aKmkqeelSe~qvRldmaEkkLss~~k~~~h~v~~~~ek~ee~~a~lr~Ke~efe-e 1026 (1243)
T KOG0971|consen 948 EDAEGLGLTLEDRETEIKELKKSAKMKQEELSEAQVRLDLAEKKLSSAAKDADHRVEKVQEKLEETQALLRKKEKEFE-E 1026 (1243)
T ss_pred HhhhhhhhhHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 3455688889999999999998877777788999999999999998775443222 22445666666664 2
Q ss_pred hHHHhhhhhhhhhHHHHhHHHHHHHHHHHh----hhcCCC
Q 001727 244 SVEATHKQHLESVKKVAKLEAECERLRLLV----RKKLPG 279 (1020)
Q Consensus 244 sae~a~KQhlEsvKKiakLEaECqRLR~lv----RKklPg 279 (1020)
++|+-. .+|..||+|=--|+--+ .|.-||
T Consensus 1027 tmdaLq-------~di~~lEsek~elKqrl~~~~~k~q~~ 1059 (1243)
T KOG0971|consen 1027 TMDALQ-------ADIDQLESEKAELKQRLNSQSKKTQEG 1059 (1243)
T ss_pred HHHHHH-------HHHHHHHhhHHHHHHHhhhcccccCcc
Confidence 333322 36888888865555443 454555
No 215
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=40.38 E-value=9.2e+02 Score=31.04 Aligned_cols=132 Identities=23% Similarity=0.215 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhhhhHhHHHHHH------------HHHHHHhhhhhhhhHHH
Q 001727 741 ALVTQLHESEEQIGNLETEVKALKESKEMIEDQMENQKSINEDLDTQLTVA------------KAKLNEGFQKFSSLEVE 808 (1020)
Q Consensus 741 ~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~~~Let~L~~~------------e~E~~el~~Ki~sLE~E 808 (1020)
.++.+.+..-+.|..++.++..+++....+.+.++.-..-.+.|..++..+ ++| +++...+..+..+
T Consensus 569 ~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AE-r~~~~EL~~~~~~ 647 (717)
T PF10168_consen 569 LLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAE-REFKKELERMKDQ 647 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHH-HHHHHHHHHHHHH
Confidence 344444444445556666666666666666666666665566666665544 333 3333344455555
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCccccccchhhhHHHHhhhHHHHHHHHHHHHHHHhhcc
Q 001727 809 LEYRNNFCEELEATCLELQLQLESVAKREPPSYGVNQGEKQSQNGWEMTAASIKLAECQETILNLGKQLKALA 881 (1020)
Q Consensus 809 Le~e~~~~eEl~AkC~ELqeQLer~~~~~~~~~~~~~e~~~~k~e~EIaaAAeKLAECQETI~nLGKQLKALa 881 (1020)
|..=.+.-+.+-.|-.-.+-|+++-+. +.... ...--.|...|..+ |++==+-|..|=+|+|-+.
T Consensus 648 l~~l~~si~~lk~k~~~Q~~~i~~~~~---~~~~s--~~L~~~Q~~~I~~i---L~~~~~~I~~~v~~ik~i~ 712 (717)
T PF10168_consen 648 LQDLKASIEQLKKKLDYQQRQIESQKS---PKKKS--IVLSESQKRTIKEI---LKQQGEEIDELVKQIKNIK 712 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccc---ccCCC--ccCCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 555445555555555445555552221 11110 11233455556554 5555556777777777653
No 216
>PHA02557 22 prohead core protein; Provisional
Probab=40.32 E-value=1.9e+02 Score=32.96 Aligned_cols=144 Identities=17% Similarity=0.169 Sum_probs=75.2
Q ss_pred hHHHHHHH-HHHHhhh-ccCcchhhHHHHHHHHhhhhcCCCCcccCCCCCCCCCCChhHHHHHhhhhhh-hhHHHHHHHH
Q 001727 67 DELMAKQA-KLVQEAG-AGQEKPEVAAAVVKKELDETLKPPLSANENLPYAGAATAPMKCVKQLNFDQA-EQEQRVHDAV 143 (1020)
Q Consensus 67 d~lvkqha-KvaeEAv-~GwEKae~E~~~lK~qLe~~~~~~~~~e~rv~hld~A~~LKeCmrQLr~~rE-EqEq~i~eav 143 (1020)
+.-||||+ |.||-.| -=|++|+..+.+-+..+.+....++ +++=-..||.+ -++-|..=-.+=+ .---.+.+.+
T Consensus 44 EaaVk~~avkLaEshi~eiae~aee~~e~~~~E~~e~a~~~L-ae~vd~~l~~~--~~eW~~ENk~Av~~~IKaem~Es~ 120 (271)
T PHA02557 44 EAAVKQHAVKLAESHIAEIAEKAEELVEEALEEAVEAIETKL-AEDADKYLDHL--AKEWLAENKLAVDRGIKAELFESF 120 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH--HHHHHHHhHHHHHHHHHHHHHHHH
Confidence 45678887 7776444 3567776655555555544444444 33333455666 5555532111000 0000112222
Q ss_pred HHhhhhH----------HH--HHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHhhhhHhhHHHHHHhhhh
Q 001727 144 VKTSGEF----------EK--AQKELEKNLREANERIAKLAAENSHLSKALLVKEKMIEDLSKRKSQAEAEFSTLMTRLD 211 (1020)
Q Consensus 144 ~~~s~e~----------ek--~k~elE~kl~e~~~~l~~~~aEn~~Ls~al~~k~~~i~el~~~k~~ae~e~~~l~~rLe 211 (1020)
..--++| ++ .=.+|+..|.|...++..+-.+|..|...+....+...=-.-.+.-+++....+..=+|
T Consensus 121 l~GLK~lF~Ehnv~vpee~vdvV~em~~~L~E~e~~~~~l~~en~~l~e~i~~~~r~~i~~e~t~gLtdsQkeKv~~L~E 200 (271)
T PHA02557 121 LGGLKELFVEHNVVVPEEKVDVVAEMEEELDEMEEELNELFEENVALEEYINEVKREVILSEVTKDLTESQKEKVASLAE 200 (271)
T ss_pred HHHHHHHHHHhCcCCcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHh
Confidence 1111111 11 33578899999999999999999998888876555443333333444444444444444
Q ss_pred hh
Q 001727 212 VT 213 (1020)
Q Consensus 212 ~~ 213 (1020)
++
T Consensus 201 gv 202 (271)
T PHA02557 201 GL 202 (271)
T ss_pred cc
Confidence 44
No 217
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=40.23 E-value=7.5e+02 Score=29.96 Aligned_cols=69 Identities=14% Similarity=0.242 Sum_probs=51.8
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHHHhh
Q 001727 731 RLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMIEDQMENQKSINEDLDTQLTVAKAKLNEGF 799 (1020)
Q Consensus 731 ~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~~~Let~L~~~e~E~~el~ 799 (1020)
+|+.+-.+-+....++.+..+.+...+.+|.-+.+--.-+.+.|++..+-|..|+.++..+.++...+.
T Consensus 110 El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 110 ELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666777777777777777777777777777777788877778888877777777777666
No 218
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=40.01 E-value=4.1e+02 Score=26.84 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 001727 715 QEENRRLRDELKSMAARLESATDRS 739 (1020)
Q Consensus 715 ~eE~e~Lk~ek~~le~~L~~~~~~~ 739 (1020)
.+++..|...++.+...|-+.+...
T Consensus 36 ~~el~~l~~~r~~l~~Eiv~l~~~~ 60 (120)
T PF12325_consen 36 QEELARLEAERDELREEIVKLMEEN 60 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554444433
No 219
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=39.83 E-value=3.6e+02 Score=33.42 Aligned_cols=97 Identities=21% Similarity=0.314 Sum_probs=0.0
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHhhhhH---HHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHhhhhHh
Q 001727 124 CVKQLNFDQAEQEQRVHDAVVKTSGEF---EKAQKELEKNLREANERIAKLAAENSHLSKALLVKEKMIEDLSKRKSQAE 200 (1020)
Q Consensus 124 CmrQLr~~rEEqEq~i~eav~~~s~e~---ek~k~elE~kl~e~~~~l~~~~aEn~~Ls~al~~k~~~i~el~~~k~~ae 200 (1020)
|+++||-.. -|=..+++-+..++.|. -.--..|..+|+++.+++.....|+.-|-..|++=...-..+..+.-+-+
T Consensus 203 ~~KelrdtN-~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~Ele 281 (596)
T KOG4360|consen 203 CVKELRDTN-TQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELE 281 (596)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q ss_pred hHHHHHHhhhhhhHhhhhhhh
Q 001727 201 AEFSTLMTRLDVTEKENAFLK 221 (1020)
Q Consensus 201 ~e~~~l~~rLe~~eKen~sLk 221 (1020)
-.....|..+..+|-|..-|+
T Consensus 282 DkyAE~m~~~~EaeeELk~lr 302 (596)
T KOG4360|consen 282 DKYAECMQMLHEAEEELKCLR 302 (596)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
No 220
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=39.81 E-value=5.2e+02 Score=27.96 Aligned_cols=103 Identities=31% Similarity=0.411 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHhhhhHhhHHHHHHhhhhhhHhhhhhhhhHHHHHHHHHhhhh
Q 001727 156 ELEKNLREANERIAKLAAENSHLSKALLVKEKMIEDLSKRKSQAEAEFSTLMTRLDVTEKENAFLKYEFRILEKELEIRN 235 (1020)
Q Consensus 156 elE~kl~e~~~~l~~~~aEn~~Ls~al~~k~~~i~el~~~k~~ae~e~~~l~~rLe~~eKen~sLkyE~~~l~kELeiR~ 235 (1020)
+++.+|-+...+|.++..++.+|... .+.+.-++ ...|..+|+.++.....-.+.+..|.+.|+ -
T Consensus 86 ~~~~klk~~~~el~k~~~~l~~L~~L-----------~~dknL~e--ReeL~~kL~~~~~~l~~~~~ki~~Lek~le--L 150 (194)
T PF15619_consen 86 ELERKLKDKDEELLKTKDELKHLKKL-----------SEDKNLAE--REELQRKLSQLEQKLQEKEKKIQELEKQLE--L 150 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHcCCchh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 45566666666666666666554432 22222221 234444444444444444444455555333 3
Q ss_pred hhhhhhhhhHHHhhhhhhhhhHHHHhHHHHHHHHHHHhh
Q 001727 236 EEMEYTRRSVEATHKQHLESVKKVAKLEAECERLRLLVR 274 (1020)
Q Consensus 236 ~Ere~~~~sae~a~KQhlEsvKKiakLEaECqRLR~lvR 274 (1020)
....|.++.+ +-.+-|.+-..++.-|..||++|+.-++
T Consensus 151 ~~k~~~rql~-~e~kK~~~~~~~~~~l~~ei~~L~~klk 188 (194)
T PF15619_consen 151 ENKSFRRQLA-SEKKKHKEAQEEVKSLQEEIQRLNQKLK 188 (194)
T ss_pred HhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455655554 3456677888888889999999887654
No 221
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=39.49 E-value=5.5e+02 Score=28.15 Aligned_cols=48 Identities=21% Similarity=0.380 Sum_probs=31.4
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHH
Q 001727 145 KTSGEFEKAQKELEKNLREANERIAKLAAENSHLSKALLVKEKMIEDL 192 (1020)
Q Consensus 145 ~~s~e~ek~k~elE~kl~e~~~~l~~~~aEn~~Ls~al~~k~~~i~el 192 (1020)
++-.+|..-+.+|..++..+.+++..+...|..|.+.+..-.+-|.+|
T Consensus 42 ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L 89 (251)
T PF11932_consen 42 KRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASL 89 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777777888888888888777777776666554443333333
No 222
>PRK00106 hypothetical protein; Provisional
Probab=39.10 E-value=8.6e+02 Score=30.32 Aligned_cols=15 Identities=13% Similarity=0.102 Sum_probs=6.1
Q ss_pred hhhhhHHHHHHHHHH
Q 001727 131 DQAEQEQRVHDAVVK 145 (1020)
Q Consensus 131 ~rEEqEq~i~eav~~ 145 (1020)
++.+-++.+.++..+
T Consensus 51 Ae~eAe~I~keA~~E 65 (535)
T PRK00106 51 AERDAEHIKKTAKRE 65 (535)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444443
No 223
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=39.08 E-value=5.9e+02 Score=29.11 Aligned_cols=39 Identities=15% Similarity=0.285 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHH
Q 001727 724 ELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKA 762 (1020)
Q Consensus 724 ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~ 762 (1020)
-+..+...++.....+..+..--..++.+|...+.||+-
T Consensus 170 ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER 208 (267)
T PF10234_consen 170 AIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELER 208 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444555555555544
No 224
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=38.63 E-value=3.3e+02 Score=31.13 Aligned_cols=32 Identities=6% Similarity=-0.118 Sum_probs=16.6
Q ss_pred HHhhccccccCCCCCceeecccCchhHHHHHH
Q 001727 601 LIEGVNVTSSVSHPYSVHVFQWNPSELHAVLQ 632 (1020)
Q Consensus 601 lie~~~~~~~~~~~~~v~~fq~k~sEL~~~Le 632 (1020)
+...++......++...-.|.+...++...+-
T Consensus 118 ~~~~v~v~~~~~s~ii~I~~~~~dP~~A~~ia 149 (362)
T TIGR01010 118 YKKRLSVDVDSVSGILTLNVTAFDAEEAQKIN 149 (362)
T ss_pred HHhceEEeecCCCCeEEEEEEecCHHHHHHHH
Confidence 34444444444455555456766666555444
No 225
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=38.45 E-value=5.4e+02 Score=29.06 Aligned_cols=118 Identities=22% Similarity=0.265 Sum_probs=78.5
Q ss_pred CCCCcccCCCCCCCCCCChhHHHHHhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHH
Q 001727 103 KPPLSANENLPYAGAATAPMKCVKQLNFDQAEQEQRVHDAVVKTSGEFEKAQKELEKNLREANERIAKLAAENSHLSKAL 182 (1020)
Q Consensus 103 ~~~~~~e~rv~hld~A~~LKeCmrQLr~~rEEqEq~i~eav~~~s~e~ek~k~elE~kl~e~~~~l~~~~aEn~~Ls~al 182 (1020)
.-++.+.--|.|+|-- .+|+|-+--|.-|=.+.-+-.-. -++|-..+.++..+|.+..+||..|-+-
T Consensus 91 RmK~PiGHDvEhiD~e-----------lvrkEl~nAlvRAGLktL~~v~~-~~d~ke~~ee~kekl~E~~~EkeeL~~e- 157 (290)
T COG4026 91 RMKIPIGHDVEHIDVE-----------LVRKELKNALVRAGLKTLQRVPE-YMDLKEDYEELKEKLEELQKEKEELLKE- 157 (290)
T ss_pred eeccCCCCCccccCHH-----------HHHHHHHHHHHHHHHHHHhccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3456677788999966 57777666666665554332211 1355666777777777777887754332
Q ss_pred HHHHHHHHHHHHhhhhHhhHHHHHHhhhhhhHhhhhhhhhHHHHHHH---HHhhhhhhhhhhhhhHH
Q 001727 183 LVKEKMIEDLSKRKSQAEAEFSTLMTRLDVTEKENAFLKYEFRILEK---ELEIRNEEMEYTRRSVE 246 (1020)
Q Consensus 183 ~~k~~~i~el~~~k~~ae~e~~~l~~rLe~~eKen~sLkyE~~~l~k---ELeiR~~Ere~~~~sae 246 (1020)
..+.+++.+.++.||..+++||+.|--++.-+.- .|+-|-.|.+-....+|
T Consensus 158 -------------leele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El~e 211 (290)
T COG4026 158 -------------LEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPE 211 (290)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccccchH
Confidence 2345788889999999999999999888887763 35555555555444444
No 226
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=38.15 E-value=5.1e+02 Score=27.36 Aligned_cols=84 Identities=13% Similarity=0.225 Sum_probs=45.1
Q ss_pred HHhhhhhhhhHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHhhhhHhhH
Q 001727 126 KQLNFDQAEQEQRVHDAVVKTS---GEFEKAQKELEKNLREANERIAKLAAENSHLSKALLVKEKMIEDLSKRKSQAEAE 202 (1020)
Q Consensus 126 rQLr~~rEEqEq~i~eav~~~s---~e~ek~k~elE~kl~e~~~~l~~~~aEn~~Ls~al~~k~~~i~el~~~k~~ae~e 202 (1020)
..+..+=+++..+|.+.+.... .+-+.++.+.|..|.++..+....++| .|+++..+.-..+..++++
T Consensus 33 ppI~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e---------~~~~~~a~~~~~~~~~ea~ 103 (155)
T PRK06569 33 PKAEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKE---------KIDSLESEFLIKKKNLEQD 103 (155)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH
Confidence 4566677788888887766443 233444444555555554444444443 3566666665555555665
Q ss_pred H-HHHHhhhhhhHhhhh
Q 001727 203 F-STLMTRLDVTEKENA 218 (1020)
Q Consensus 203 ~-~~l~~rLe~~eKen~ 218 (1020)
+ +.|...++.+.+..-
T Consensus 104 L~~~~~~~~~~~~~~~~ 120 (155)
T PRK06569 104 LKNSINQNIEDINLAAK 120 (155)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 5 333444444444333
No 227
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=37.57 E-value=83 Score=27.55 Aligned_cols=37 Identities=32% Similarity=0.347 Sum_probs=18.7
Q ss_pred HHHHHHhhhhHhhHHHHHHhhhhhhHhhhhhhhhHHH
Q 001727 189 IEDLSKRKSQAEAEFSTLMTRLDVTEKENAFLKYEFR 225 (1020)
Q Consensus 189 i~el~~~k~~ae~e~~~l~~rLe~~eKen~sLkyE~~ 225 (1020)
|.+|.......+.+...|...++.+.+++..|+.|+|
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~~ 64 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQSLKSENH 64 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3333333333334444555556666666666666554
No 228
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.34 E-value=2.7e+02 Score=32.89 Aligned_cols=61 Identities=18% Similarity=0.174 Sum_probs=32.1
Q ss_pred hhhHHHHHHHHHHHHHhhhhccCCCCCCCCCccccccchhhhHHHHhhhHHHHHHHHHHHHHHHh
Q 001727 814 NFCEELEATCLELQLQLESVAKREPPSYGVNQGEKQSQNGWEMTAASIKLAECQETILNLGKQLK 878 (1020)
Q Consensus 814 ~~~eEl~AkC~ELqeQLer~~~~~~~~~~~~~e~~~~k~e~EIaaAAeKLAECQETI~nLGKQLK 878 (1020)
.+|.=+-.|-+|-++.++... .-...........-.+|..|-. |.-|| |+-+|.+|||-|.
T Consensus 267 ~niDIL~~k~~eal~~~~n~~-~~~~D~~~~~~~~l~kq~l~~~--A~d~a-ieD~i~~L~~~~r 327 (365)
T KOG2391|consen 267 KNIDILKSKVREALEKAENLE-ALDIDEAIECTAPLYKQILECY--ALDLA-IEDAIYSLGKSLR 327 (365)
T ss_pred hhhHHHHHHHHHHHhhhccCc-CCCchhhhhccchHHHHHHHhh--hhhhH-HHHHHHHHHHHHh
Confidence 334333334444344444311 1223333344455667665544 45454 9999999999664
No 229
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=37.15 E-value=3.4e+02 Score=25.13 Aligned_cols=46 Identities=22% Similarity=0.341 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHH
Q 001727 726 KSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMIE 771 (1020)
Q Consensus 726 ~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E 771 (1020)
..||.+++.+.+.+..++....+.+..-.+|..+...++..|..+.
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4455668888888888888777777776666666666555554443
No 230
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=37.05 E-value=2.1e+02 Score=34.74 Aligned_cols=44 Identities=23% Similarity=0.384 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhH
Q 001727 135 QEQRVHDAVVKTSGEFEKAQKELEKNLREANERIAKLAAENSHLS 179 (1020)
Q Consensus 135 qEq~i~eav~~~s~e~ek~k~elE~kl~e~~~~l~~~~aEn~~Ls 179 (1020)
|-++-.+-|.+-.+..+.++ ..|..|.+++++|.++..|+.+..
T Consensus 236 Qnk~akehv~km~kdle~Lq-~aEqsl~dlQk~Lekar~e~rnva 279 (575)
T KOG4403|consen 236 QNKKAKEHVNKMMKDLEGLQ-RAEQSLEDLQKRLEKAREEQRNVA 279 (575)
T ss_pred hhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhchh
Confidence 45566677888888999997 689999999999999999977643
No 231
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=36.91 E-value=1.1e+03 Score=30.68 Aligned_cols=151 Identities=15% Similarity=0.137 Sum_probs=79.1
Q ss_pred hhHHHHHhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHhhhhHh
Q 001727 121 PMKCVKQLNFDQAEQEQRVHDAVVKTSGEFEKAQKELEKNLREANERIAKLAAENSHLSKALLVKEKMIEDLSKRKSQAE 200 (1020)
Q Consensus 121 LKeCmrQLr~~rEEqEq~i~eav~~~s~e~ek~k~elE~kl~e~~~~l~~~~aEn~~Ls~al~~k~~~i~el~~~k~~ae 200 (1020)
||||+-|+-.+.++-...+++-=-..+-=.-+. .+=|.++.++.-.|.++.---..|-.+-..-..++.+.+....+..
T Consensus 217 lKE~~~k~~~leeey~~E~n~kEkqvs~L~~q~-~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~ 295 (786)
T PF05483_consen 217 LKEDYEKFEDLEEEYKKEVNDKEKQVSLLQTQL-KEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLL 295 (786)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHH
Confidence 899999999999988887765322221111111 1222333333333333322222222111122223333333344444
Q ss_pred hHHHHHHhhhhhhHhhhhhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhhhhhhhhhHHHHhHHHHHHHHHHHhhh
Q 001727 201 AEFSTLMTRLDVTEKENAFLKYEFRILEKELEIRNEEMEYTRRSVEATHKQHLESVKKVAKLEAECERLRLLVRK 275 (1020)
Q Consensus 201 ~e~~~l~~rLe~~eKen~sLkyE~~~l~kELeiR~~Ere~~~~sae~a~KQhlEsvKKiakLEaECqRLR~lvRK 275 (1020)
+++++...-|+-++.--..|-+++....+-+..-++|++-...----|.-+|.- +++.|++=.+-|..+++.
T Consensus 296 ~eL~~~K~slq~~~~tq~~le~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s~---~v~e~qtti~~L~~lL~~ 367 (786)
T PF05483_consen 296 QELEDIKQSLQESESTQKALEEDLQQATKTLIQLTEEKEAQMEELNKAKAQHSF---VVTELQTTICNLKELLTT 367 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 445555555555555556788888888888888888887655544444444433 345566666666655543
No 232
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=36.43 E-value=2.7e+02 Score=26.57 Aligned_cols=67 Identities=21% Similarity=0.333 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHHHhhhhhhhh
Q 001727 739 SEALVTQLHESEEQIGNLETEVKALKESKEMIEDQMENQKSINEDLDTQLTVAKAKLNEGFQKFSSL 805 (1020)
Q Consensus 739 ~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~~~Let~L~~~e~E~~el~~Ki~sL 805 (1020)
++-+..+.+.+-.+|.-||-|+..+|+-|.-+...........+.|..+-..+..|.+.-...+.+|
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777888889999888888888887777766666777666666666666555555444
No 233
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=36.08 E-value=3.9e+02 Score=28.85 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=17.6
Q ss_pred HhhHHHHHHhhhhhhHhhhhhhhhHHHH
Q 001727 199 AEAEFSTLMTRLDVTEKENAFLKYEFRI 226 (1020)
Q Consensus 199 ae~e~~~l~~rLe~~eKen~sLkyE~~~ 226 (1020)
.++++..+++..+.+..++...+++|+.
T Consensus 157 ~~~ei~~lks~~~~l~~~~~~~e~~F~~ 184 (190)
T PF05266_consen 157 KDKEISRLKSEAEALKEEIENAELEFQS 184 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666654
No 234
>PF10304 DUF2411: Domain of unknown function (DUF2411); InterPro: IPR019414 This entry represents a 38 residue domain of unknown function that is found at the extreme C-terminal end of some HEAT repeats.
Probab=36.02 E-value=28 Score=28.05 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=20.1
Q ss_pred hcCcchHHHHHHHHHHHhhhccC
Q 001727 62 DCHPKDELMAKQAKLVQEAGAGQ 84 (1020)
Q Consensus 62 ~~~~Kd~lvkqhaKvaeEAv~Gw 84 (1020)
..+..|.+|++||.+|-|.+-+|
T Consensus 14 ~~~D~D~lvr~hA~~~Le~Le~~ 36 (36)
T PF10304_consen 14 ESTDNDDLVREHAQDALEELEAW 36 (36)
T ss_pred HHhCCcHHHHHHHHHHHHHHhcC
Confidence 44667999999999999998888
No 235
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=35.98 E-value=8.8e+02 Score=29.50 Aligned_cols=178 Identities=16% Similarity=0.150 Sum_probs=98.2
Q ss_pred cchhhhhhHHHHHH---HHHhhcCcchHHHHHHHHHHHhhhccCcchh-hHHHHHHHHhhhhcCC--CCcccCCCCCCCC
Q 001727 44 GSERSMKNLNEQLA---SVIFDCHPKDELMAKQAKLVQEAGAGQEKPE-VAAAVVKKELDETLKP--PLSANENLPYAGA 117 (1020)
Q Consensus 44 ~~~~~~k~LnekLs---~al~~~~~Kd~lvkqhaKvaeEAv~GwEKae-~E~~~lK~qLe~~~~~--~~~~e~rv~hld~ 117 (1020)
.++..++.++..++ .++.++-...+-+.+.....+-.+-.-+..+ +.-..|-.+|.++-.. +-.+--.++.=|.
T Consensus 63 kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~~r~g~~p~~~ll~~~eda 142 (420)
T COG4942 63 KLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDA 142 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhhcChhhh
Confidence 34444555444333 2333333333344444444444333333333 4455566677777664 2222223333222
Q ss_pred C--CChhHHHHHhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHh
Q 001727 118 A--TAPMKCVKQLNFDQAEQEQRVHDAVVKTSGEFEKAQKELEKNLREANERIAKLAAENSHLSKALLVKEKMIEDLSKR 195 (1020)
Q Consensus 118 A--~~LKeCmrQLr~~rEEqEq~i~eav~~~s~e~ek~k~elE~kl~e~~~~l~~~~aEn~~Ls~al~~k~~~i~el~~~ 195 (1020)
. -.|.--.+-|...| - ...+.+.....+.-..+..++++=.++...+.+..++-..|...+++|.++...|
T Consensus 143 ~~~~R~ai~~~~l~~~~---~-~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l--- 215 (420)
T COG4942 143 QRSVRLAIYYGALNPAR---A-ERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQL--- 215 (420)
T ss_pred hHHHHHHHHHHHhhHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 2 00111112222222 1 2235555556777777778888888888888888888888999999999999866
Q ss_pred hhhHhhHHHHHHhhhhhhHhhhhhhhhHHHHHHHHHh
Q 001727 196 KSQAEAEFSTLMTRLDVTEKENAFLKYEFRILEKELE 232 (1020)
Q Consensus 196 k~~ae~e~~~l~~rLe~~eKen~sLkyE~~~l~kELe 232 (1020)
++++..-+.+++.+-..-..|+-++..+..+.-
T Consensus 216 ----~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA 248 (420)
T COG4942 216 ----NSELSADQKKLEELRANESRLKNEIASAEAAAA 248 (420)
T ss_pred ----HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 455556666677666666777776666554443
No 236
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=35.84 E-value=5e+02 Score=29.74 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 001727 715 QEENRRLRDELKSMAARLESATD 737 (1020)
Q Consensus 715 ~eE~e~Lk~ek~~le~~L~~~~~ 737 (1020)
.+++.+++.++...+.+|+.-.+
T Consensus 176 ~~ql~~~~~~l~~ae~~l~~fr~ 198 (362)
T TIGR01010 176 ENEVKEAEQRLNATKAELLKYQI 198 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555544433
No 237
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=35.41 E-value=6.9e+02 Score=30.77 Aligned_cols=37 Identities=8% Similarity=0.055 Sum_probs=18.0
Q ss_pred hhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 001727 129 NFDQAEQEQRVHDAVVKTSGEFEKAQKELEKNLREAN 165 (1020)
Q Consensus 129 r~~rEEqEq~i~eav~~~s~e~ek~k~elE~kl~e~~ 165 (1020)
..++.+-++.+.+|..+.-.+....+.+.+.++.+..
T Consensus 28 ~~Ae~eAe~i~keA~~eAke~~ke~~~EaeeE~~~~R 64 (514)
T TIGR03319 28 GSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLR 64 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555544445555544444444333
No 238
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.40 E-value=6.2e+02 Score=31.86 Aligned_cols=115 Identities=27% Similarity=0.365 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHH-----------HHHHHHHHHHHhhhhH---hh
Q 001727 136 EQRVHDAVVKTSGEFEKAQKELEKNLREANERIAKLAAENSHLSKALL-----------VKEKMIEDLSKRKSQA---EA 201 (1020)
Q Consensus 136 Eq~i~eav~~~s~e~ek~k~elE~kl~e~~~~l~~~~aEn~~Ls~al~-----------~k~~~i~el~~~k~~a---e~ 201 (1020)
|-.|++-..+-..=.-++ .+||..|..+.+.|.....||..|..--+ .|-+|-.+|++-|.+- =+
T Consensus 92 esLLqESaakE~~yl~kI-~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~Rlls 170 (772)
T KOG0999|consen 92 ESLLQESAAKEEYYLQKI-LELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLS 170 (772)
T ss_pred HHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335555555544334455 57888888888888888888877654332 3444555555544431 11
Q ss_pred HHHHH----------HhhhhhhHhhhhhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhhhh
Q 001727 202 EFSTL----------MTRLDVTEKENAFLKYEFRILEKELEIRNEEMEYTRRSVEATHKQ 251 (1020)
Q Consensus 202 e~~~l----------~~rLe~~eKen~sLkyE~~~l~kELeiR~~Ere~~~~sae~a~KQ 251 (1020)
+...| .+.|-.-+=|.-.||+|+.-+.+|.||-|.--+=..+--+.|-||
T Consensus 171 eYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~~~Lk~IAekQ 230 (772)
T KOG0999|consen 171 EYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQ 230 (772)
T ss_pred HHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11211 123333344455677888888888888775444333333333333
No 239
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=35.20 E-value=6e+02 Score=28.93 Aligned_cols=92 Identities=20% Similarity=0.189 Sum_probs=47.5
Q ss_pred hccCc-chhhHHHHHHHHhhhhcCCCCcccCCCC----CCCCCCC-----hhHHHHHhhhhhhhhHHHHHHHHHHhhhhH
Q 001727 81 GAGQE-KPEVAAAVVKKELDETLKPPLSANENLP----YAGAATA-----PMKCVKQLNFDQAEQEQRVHDAVVKTSGEF 150 (1020)
Q Consensus 81 v~GwE-Kae~E~~~lK~qLe~~~~~~~~~e~rv~----hld~A~~-----LKeCmrQLr~~rEEqEq~i~eav~~~s~e~ 150 (1020)
.--|+ |++..+..|.+||+..-.+-..+.+-|. |.|---- +-+-+|||-.+++.|..-+-|.-- -.
T Consensus 72 Lqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~e----~~ 147 (258)
T PF15397_consen 72 LQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDELNE----MR 147 (258)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH
Confidence 34564 5667788888888775443322222221 1221111 224556777777777666554422 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhH
Q 001727 151 EKAQKELEKNLREANERIAKLAAENS 176 (1020)
Q Consensus 151 ek~k~elE~kl~e~~~~l~~~~aEn~ 176 (1020)
...+..|+.++......+..+.++++
T Consensus 148 ~~el~~l~~~~q~k~~~il~~~~~k~ 173 (258)
T PF15397_consen 148 QMELASLSRKIQEKKEEILSSAAEKT 173 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666666566655555544
No 240
>PF10154 DUF2362: Uncharacterized conserved protein (DUF2362); InterPro: IPR019311 This is a family of proteins conserved from nematodes to humans. The function is not known.
Probab=35.13 E-value=6.1e+02 Score=31.48 Aligned_cols=53 Identities=17% Similarity=0.293 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHH
Q 001727 743 VTQLHESEEQIGNLETEVKALKESKEMIEDQMENQKSINEDLDTQLTVAKAKLN 796 (1020)
Q Consensus 743 ~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~~~Let~L~~~e~E~~ 796 (1020)
+.|..|++..+..|...+.. .+.|.++-.+.+.+..+...+++++..+..-+.
T Consensus 136 ~rq~~Eme~a~q~Lg~~ltd-~dIN~laaqH~Ee~q~ie~kw~seL~~L~~~QK 188 (510)
T PF10154_consen 136 ERQTEEMEKAMQKLGISLTD-RDINHLAAQHFEEQQRIESKWSSELKALKETQK 188 (510)
T ss_pred HHHHHHHHHHHHhcCCCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777766665554432 456677777777777777777776665544433
No 241
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=34.77 E-value=1.1e+03 Score=31.55 Aligned_cols=153 Identities=18% Similarity=0.180 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHh-----hhhhhhhhh-------
Q 001727 716 EENRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMIEDQM-----ENQKSINED------- 783 (1020)
Q Consensus 716 eE~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Ql-----e~~~~~~~~------- 783 (1020)
.|+..|+.+-+.|+..+..+++.++.++-.....++.+..++....- +.--.+++... +++..-|..
T Consensus 181 ~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~-~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r 259 (1072)
T KOG0979|consen 181 IELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERK-KSKIELLEKKKKWVEYKKHDREYNAYKQAKDR 259 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccccchHhhhHHHHHHHHHHHH
Confidence 57888889999999999999999999988888888888777654432 11122222221 122222221
Q ss_pred HhHHHHHHHHHHHHhhhhhhhhHHHHH-------HhhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCccccccchhhhH
Q 001727 784 LDTQLTVAKAKLNEGFQKFSSLEVELE-------YRNNFCEELEATCLELQLQLESVAKREPPSYGVNQGEKQSQNGWEM 856 (1020)
Q Consensus 784 Let~L~~~e~E~~el~~Ki~sLE~ELe-------~e~~~~eEl~AkC~ELqeQLer~~~~~~~~~~~~~e~~~~k~e~EI 856 (1020)
+-.++..+..++.....++..||.+.. .....+-++.++|++..+.|..+..+ -..+ .++...+
T Consensus 260 ~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~--------v~~~-~~~le~l 330 (1072)
T KOG0979|consen 260 AKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDE--------VEEK-KNKLESL 330 (1072)
T ss_pred HHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHH-HHHHHHH
Confidence 222233333333333344444444332 23344557788888888888776641 0111 1222334
Q ss_pred HHHhhhHHHHHHHHHHHHHHHhhcc
Q 001727 857 TAASIKLAECQETILNLGKQLKALA 881 (1020)
Q Consensus 857 aaAAeKLAECQETI~nLGKQLKALa 881 (1020)
--+++|. |++|.+.-|-+-.++
T Consensus 331 k~~~~~r---q~~i~~~~k~i~~~q 352 (1072)
T KOG0979|consen 331 KKAAEKR---QKRIEKAKKMILDAQ 352 (1072)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHH
Confidence 4455554 667777666554443
No 242
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=34.69 E-value=1.2e+03 Score=30.53 Aligned_cols=54 Identities=30% Similarity=0.300 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHhhhhc------------cCCCCCCC
Q 001727 789 TVAKAKLNEGFQKFSSLEVELEYRNNFCEELEATCLELQLQLESVA------------KREPPSYG 842 (1020)
Q Consensus 789 ~~~e~E~~el~~Ki~sLE~ELe~e~~~~eEl~AkC~ELqeQLer~~------------~~~~~~~~ 842 (1020)
......++...+.+..++..+.+-.....+.......++.++.... .+.||.|+
T Consensus 399 ~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~CPvCg 464 (908)
T COG0419 399 AELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCG 464 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 3334444444444444444444444555555555555555555421 24678777
No 243
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=34.63 E-value=5.5e+02 Score=29.49 Aligned_cols=54 Identities=19% Similarity=0.187 Sum_probs=27.6
Q ss_pred hhHHhHHHHHHHHHHHHHHHHhhhhHhhHHHHHHhhhhhhHhhhhhhhhHHHHH
Q 001727 174 ENSHLSKALLVKEKMIEDLSKRKSQAEAEFSTLMTRLDVTEKENAFLKYEFRIL 227 (1020)
Q Consensus 174 En~~Ls~al~~k~~~i~el~~~k~~ae~e~~~l~~rLe~~eKen~sLkyE~~~l 227 (1020)
-|.-|..+-.+=...+.+|.+.-....+-+-.|+..|..++|++-.|+-++..+
T Consensus 251 ~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~ 304 (330)
T KOG2991|consen 251 QSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQV 304 (330)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333343343444444555555444444444566666666666665555444433
No 244
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=34.59 E-value=7e+02 Score=28.88 Aligned_cols=159 Identities=19% Similarity=0.207 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhhhh----------H
Q 001727 715 QEENRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMIEDQMENQKSINED----------L 784 (1020)
Q Consensus 715 ~eE~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~~~----------L 784 (1020)
.=++.-||+++.+|+..+...+...+.-...|+-....+..|+.++..+++.-..-+.-|+.|-.+--. +
T Consensus 111 ~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~khGlVlv~~~~ngd~~~~~ 190 (302)
T PF09738_consen 111 MYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELIEKHGLVLVPDATNGDTSDEP 190 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCeeeCCCCCCCccccCc
Confidence 346677899999999888877777655555566666667777777776666555555555554422110 0
Q ss_pred h-----HHHHHHHHHHHHhhhh-hhhhHHHHHHhhhhhHHHHHHHHHHHHHhhhhccC-----CCCCCCCC-------c-
Q 001727 785 D-----TQLTVAKAKLNEGFQK-FSSLEVELEYRNNFCEELEATCLELQLQLESVAKR-----EPPSYGVN-------Q- 845 (1020)
Q Consensus 785 e-----t~L~~~e~E~~el~~K-i~sLE~ELe~e~~~~eEl~AkC~ELqeQLer~~~~-----~~~~~~~~-------~- 845 (1020)
. ....+....++-+-.= =.+|.+-|.+=-.--+++...-+.|+.||+-.... .+...++- +
T Consensus 191 ~~~~~~~~~~vs~e~a~~L~~aG~g~LDvRLkKl~~eke~L~~qv~klk~qLee~~~~~~~~~~~~~~~~l~~~~~~En~ 270 (302)
T PF09738_consen 191 NNVGHPKRALVSQEAAQLLESAGDGSLDVRLKKLADEKEELLEQVRKLKLQLEERQSEGRRQKSSSENGVLGDDEDLENT 270 (302)
T ss_pred cccCCCcccccchhhhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcccccccccccc
Confidence 0 1111112222222211 24555555444444456666778888888532221 11111111 1
Q ss_pred ----cccccchhhhHHHHhhhHHHHHHHHHHH
Q 001727 846 ----GEKQSQNGWEMTAASIKLAECQETILNL 873 (1020)
Q Consensus 846 ----e~~~~k~e~EIaaAAeKLAECQETI~nL 873 (1020)
.+.|--..+-|+.--=||+.+-.-|++|
T Consensus 271 d~~~~d~qrdanrqisd~KfKl~KaEQeit~~ 302 (302)
T PF09738_consen 271 DLHFIDLQRDANRQISDYKFKLQKAEQEITTL 302 (302)
T ss_pred cccHHHhhhHHHHHHHHHHHHHHHHHHhhccC
Confidence 1233233566776667777775556553
No 245
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=34.41 E-value=2e+02 Score=31.43 Aligned_cols=28 Identities=21% Similarity=0.506 Sum_probs=20.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 001727 147 SGEFEKAQKELEKNLREANERIAKLAAENS 176 (1020)
Q Consensus 147 s~e~ek~k~elE~kl~e~~~~l~~~~aEn~ 176 (1020)
..+||.++ |+.+|+++..+|.++..+..
T Consensus 93 ~~dwEevr--LkrELa~Le~~l~~~~~~~~ 120 (195)
T PF12761_consen 93 GTDWEEVR--LKRELAELEEKLSKVEQAAE 120 (195)
T ss_pred CCchHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 56888886 78888888888876665544
No 246
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=34.26 E-value=8.5e+02 Score=29.66 Aligned_cols=81 Identities=20% Similarity=0.259 Sum_probs=56.4
Q ss_pred HhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHH--HHHhhhhhhhhhhHhHHHHHHHHHHHHhhh------------
Q 001727 735 ATDRSEALVTQLHESEEQIGNLETEVKALKESKEMI--EDQMENQKSINEDLDTQLTVAKAKLNEGFQ------------ 800 (1020)
Q Consensus 735 ~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~--E~Qle~~~~~~~~Let~L~~~e~E~~el~~------------ 800 (1020)
..|.+.-...++...|+.+...+..|...+..+.++ +.+...+..+-..|+.+|..+++++..+..
T Consensus 240 r~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l 319 (434)
T PRK15178 240 QKERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRL 319 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHH
Confidence 445555667778888888888888888777777664 444455555567788888888888886643
Q ss_pred --hhhhhHHHHHHhhhh
Q 001727 801 --KFSSLEVELEYRNNF 815 (1020)
Q Consensus 801 --Ki~sLE~ELe~e~~~ 815 (1020)
.|..||.+|..++..
T Consensus 320 ~~rI~aLe~QIa~er~k 336 (434)
T PRK15178 320 SAKIKVLEKQIGEQRNR 336 (434)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 566777777665443
No 247
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=34.16 E-value=4.5e+02 Score=33.35 Aligned_cols=112 Identities=16% Similarity=0.225 Sum_probs=59.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhh---------HHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhh----
Q 001727 714 LQEENRRLRDELKSMAARLESATDRS---------EALVTQLHESEEQIGNLETEVKALKESKEMIEDQMENQKSI---- 780 (1020)
Q Consensus 714 ~~eE~e~Lk~ek~~le~~L~~~~~~~---------E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~---- 780 (1020)
..+++..++.++...|.+|+.-..+. +..-.++.+.+.++..++.++..+ ........-.
T Consensus 272 L~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l-------~~~~~~~hP~v~~l 344 (726)
T PRK09841 272 LQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEI-------SQLYKKDHPTYRAL 344 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhcccCchHHHH
Confidence 35777888888888887776655432 222333334444444443333221 1111000001
Q ss_pred ---hhhHhHHHHHHHHHHH---HhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHhhh
Q 001727 781 ---NEDLDTQLTVAKAKLN---EGFQKFSSLEVELEYRNNFCEELEATCLELQLQLES 832 (1020)
Q Consensus 781 ---~~~Let~L~~~e~E~~---el~~Ki~sLE~ELe~e~~~~eEl~AkC~ELqeQLer 832 (1020)
...|..++..++..+. .....+..|+-+.+-.+..|..++.|..|++.+...
T Consensus 345 ~~~~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~lY~~lL~r~~e~~i~~a~ 402 (726)
T PRK09841 345 LEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELSISKSS 402 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1223333333332222 233335567888888899999999999998777653
No 248
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=33.69 E-value=7.6e+02 Score=33.16 Aligned_cols=106 Identities=24% Similarity=0.305 Sum_probs=51.7
Q ss_pred hhhhhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhhhhhhhhhHHHHhHHHHHHHHHHHhhhcCCCchHHHhhHHHHHhhc
Q 001727 215 KENAFLKYEFRILEKELEIRNEEMEYTRRSVEATHKQHLESVKKVAKLEAECERLRLLVRKKLPGSAASAKMKSEVEMQG 294 (1020)
Q Consensus 215 Ken~sLkyE~~~l~kELeiR~~Ere~~~~sae~a~KQhlEsvKKiakLEaECqRLR~lvRKklPgpAala~Mk~Eve~lg 294 (1020)
+.+..|+.|+-++.+ .||..+.+|--++ -+-++-=.-|.-|||||-+||.=.---|----....-++|++.+.
T Consensus 170 ~~~~hL~velAdle~--kir~LrqElEEK~-----enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalr 242 (1195)
T KOG4643|consen 170 KKNLHLEVELADLEK--KIRTLRQELEEKF-----ENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALR 242 (1195)
T ss_pred chhHHHHHHHHHHHH--HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 344444444444433 3455555554444 222222334677888888888644322211100011123333321
Q ss_pred cchhhhhcccCCCCcccccccccCCCcchhh-HHHHHHhhHHhHHHH
Q 001727 295 RDQMDMRRRKLSPTRDLIVRHATTESSHDIS-LLARLHDMEKENRTL 340 (1020)
Q Consensus 295 ~d~~e~rrr~~~~~~~~~~~~~~~~~~~~~~-lt~rL~~~EeEnk~L 340 (1020)
. +. -.+++.|-+...|.. |.+|+-.+++.|+.|
T Consensus 243 e-------~a------er~d~~ykerlmDs~fykdRveelkedN~vL 276 (1195)
T KOG4643|consen 243 E-------QA------ERPDTTYKERLMDSDFYKDRVEELKEDNRVL 276 (1195)
T ss_pred H-------hh------hcCCCccchhhhhhHHHHHHHHHHHhhhHHH
Confidence 1 10 112233444556666 889999988888887
No 249
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=33.56 E-value=5.6e+02 Score=26.52 Aligned_cols=37 Identities=22% Similarity=0.439 Sum_probs=29.1
Q ss_pred hhHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhHH
Q 001727 782 EDLDTQLTVAKAKLNEGFQKFSSLEVELEYRNNFCEE 818 (1020)
Q Consensus 782 ~~Let~L~~~e~E~~el~~Ki~sLE~ELe~e~~~~eE 818 (1020)
-..++++..++.=++...+||.-||+-+......|.+
T Consensus 100 ~~~~~~I~~Lq~~~~~~~~ki~~Le~~i~~~~~~Ck~ 136 (146)
T PF08702_consen 100 INQPSNIRVLQNILRSNRQKIQRLEQDIDQQERYCKE 136 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 3345667888888899999999999988888777754
No 250
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=33.46 E-value=2.1e+02 Score=28.10 Aligned_cols=82 Identities=21% Similarity=0.315 Sum_probs=45.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHH--Hhh--h-hhhhhhhHhHHHHHHHHHHHHhhhh
Q 001727 727 SMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMIED--QME--N-QKSINEDLDTQLTVAKAKLNEGFQK 801 (1020)
Q Consensus 727 ~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~--Qle--~-~~~~~~~Let~L~~~e~E~~el~~K 801 (1020)
+|-..|+=+.+..+-+.-.+-+.|..=..|..||+-++---.-... ++. + -......+..+|..++.+++++..|
T Consensus 5 eLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~~~~~~~g~~~~~~~~~l~~eLk~a~~qi~~Ls~k 84 (96)
T PF11365_consen 5 ELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLDSLAKLSEGGSPSGREAELQEELKLAREQINELSGK 84 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCccccHHHHHHHHHHHHHHHHHhhH
Confidence 3444455555666566666666666666666666544321111110 000 0 0111245777888899999999999
Q ss_pred hhhhHHH
Q 001727 802 FSSLEVE 808 (1020)
Q Consensus 802 i~sLE~E 808 (1020)
|--|++|
T Consensus 85 v~eLq~E 91 (96)
T PF11365_consen 85 VMELQYE 91 (96)
T ss_pred HHHHhhc
Confidence 9877654
No 251
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=33.45 E-value=1e+03 Score=29.64 Aligned_cols=38 Identities=13% Similarity=0.218 Sum_probs=25.1
Q ss_pred HHhHHHHHHHHhhhhhhhhHHHhhhhhhhhhhhHHHHHHH
Q 001727 334 EKENRTLKDIVITKSTELQASRMMFSRTASRLSYVESQLR 373 (1020)
Q Consensus 334 EeEnk~LKe~Lakkn~ELQ~sr~m~a~taskLs~le~ql~ 373 (1020)
+-+..++|+.|+...+-+|+.+-- ..+.|+..++++|.
T Consensus 454 ~~eV~~vRqELa~lLssvQ~~~e~--~~~rkiaeiqg~l~ 491 (531)
T PF15450_consen 454 EREVGAVRQELATLLSSVQLLKED--NPGRKIAEIQGKLA 491 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC--ChhhhHHHHHHHHH
Confidence 345688999999988888876532 12346666666554
No 252
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=33.31 E-value=8.5e+02 Score=28.55 Aligned_cols=93 Identities=17% Similarity=0.097 Sum_probs=51.3
Q ss_pred hhhhHhHHHHHHHHHHHHhhhhhhhhHHHHHH---hhhhhHHHHHHHHHHHHHhhhhccCCCCCCCCCccccccchhhhH
Q 001727 780 INEDLDTQLTVAKAKLNEGFQKFSSLEVELEY---RNNFCEELEATCLELQLQLESVAKREPPSYGVNQGEKQSQNGWEM 856 (1020)
Q Consensus 780 ~~~~Let~L~~~e~E~~el~~Ki~sLE~ELe~---e~~~~eEl~AkC~ELqeQLer~~~~~~~~~~~~~e~~~~k~e~EI 856 (1020)
-.++|..+|..+......+..-+.++-.|.++ ||..| --||.-|-.+|.-+=+ +.....+ +.|--+--.+
T Consensus 127 ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~y---k~K~~RLN~ELn~~L~-g~~~riv-DIDaLi~ENR-- 199 (319)
T PF09789_consen 127 EREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAY---KCKAHRLNHELNYILN-GDENRIV-DIDALIMENR-- 199 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhC-CCCCCcc-cHHHHHHHHH--
Confidence 34566666666666666666666666555554 44444 3477777788865443 3333322 3332222222
Q ss_pred HHHhhhHHHHHHHHHHHHHHHhhc
Q 001727 857 TAASIKLAECQETILNLGKQLKAL 880 (1020)
Q Consensus 857 aaAAeKLAECQETI~nLGKQLKAL 880 (1020)
=--++|..||+-...+-..+--.
T Consensus 200 -yL~erl~q~qeE~~l~k~~i~KY 222 (319)
T PF09789_consen 200 -YLKERLKQLQEEKELLKQTINKY 222 (319)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHH
Confidence 22478999999766655544433
No 253
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=33.26 E-value=1.1e+03 Score=29.64 Aligned_cols=29 Identities=24% Similarity=0.243 Sum_probs=12.2
Q ss_pred HHHHhhhhhhHhhhhhhhhHHHHHHHHHh
Q 001727 204 STLMTRLDVTEKENAFLKYEFRILEKELE 232 (1020)
Q Consensus 204 ~~l~~rLe~~eKen~sLkyE~~~l~kELe 232 (1020)
..+..+++.++++...++-++..+..+++
T Consensus 424 ~~l~e~l~~l~~~l~~~~~~~~~~~~~~~ 452 (650)
T TIGR03185 424 AQLLEELGEAQNELFRSEAEIEELLRQLE 452 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444333
No 254
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=32.96 E-value=76 Score=35.56 Aligned_cols=32 Identities=31% Similarity=0.369 Sum_probs=27.6
Q ss_pred hHHHHHHhhhhhhHhhhhhhhhHHHHHHHHHh
Q 001727 201 AEFSTLMTRLDVTEKENAFLKYEFRILEKELE 232 (1020)
Q Consensus 201 ~e~~~l~~rLe~~eKen~sLkyE~~~l~kELe 232 (1020)
........|...++|||.+|+-+|..+++||.
T Consensus 215 ~~~~e~~~r~~~leken~~lr~~v~~l~~el~ 246 (269)
T KOG3119|consen 215 QKEDEMAHRVAELEKENEALRTQVEQLKKELA 246 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33357789999999999999999999999885
No 255
>KOG4031 consensus Vesicle coat protein clathrin, light chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.95 E-value=1.9e+02 Score=31.95 Aligned_cols=54 Identities=30% Similarity=0.337 Sum_probs=40.5
Q ss_pred hHHHHHhhhhhhhhHHHHHHHHH---HhhhhH-HHHHHHHHHHHHHHHHHHHHHHhhh
Q 001727 122 MKCVKQLNFDQAEQEQRVHDAVV---KTSGEF-EKAQKELEKNLREANERIAKLAAEN 175 (1020)
Q Consensus 122 KeCmrQLr~~rEEqEq~i~eav~---~~s~e~-ek~k~elE~kl~e~~~~l~~~~aEn 175 (1020)
..=-.-+|.-||+|.++||+--. ++-.|| ++++++|+.=....++++.+..+.|
T Consensus 102 ~~epE~IRkWkeeQ~~rl~ekD~~sek~k~ElrekAkKelddwy~~~~ek~~k~~~~n 159 (216)
T KOG4031|consen 102 RDEPEKIRKWKEEQMKRLQEKDEASEKLKEELREKAKKELDDWYDQQNEKLEKTKANN 159 (216)
T ss_pred ccChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33335679999999999997543 223344 7888899988888888888888877
No 256
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=32.64 E-value=93 Score=26.58 Aligned_cols=32 Identities=28% Similarity=0.311 Sum_probs=26.6
Q ss_pred HhhHHHHHHhhhhhhHhhhhhhhhHHHHHHHH
Q 001727 199 AEAEFSTLMTRLDVTEKENAFLKYEFRILEKE 230 (1020)
Q Consensus 199 ae~e~~~l~~rLe~~eKen~sLkyE~~~l~kE 230 (1020)
-...+..|..++..++.+|..|+.++..|..|
T Consensus 23 kk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 23 KKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34455688999999999999999999988876
No 257
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=32.61 E-value=2.5e+02 Score=30.00 Aligned_cols=61 Identities=21% Similarity=0.363 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HHHHhhHHHHHHHHHHhHHHHHHHhh
Q 001727 715 QEENRRLRDELKSMAARLESATDRSEALVTQLHES-EEQIGNLETEVKALKESKEMIEDQME 775 (1020)
Q Consensus 715 ~eE~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~-E~~i~~LqsEL~~~keS~~l~E~Qle 775 (1020)
..+|..|+.++..|+..++......+.+..+..+. +....-.+.|+..++..+..+..+|+
T Consensus 126 ~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 126 EEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666666666666666555555555544432 22233345555566666655555554
No 258
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=32.60 E-value=2.4e+02 Score=34.39 Aligned_cols=97 Identities=23% Similarity=0.267 Sum_probs=56.0
Q ss_pred hHHHHHHHHhhhhcCCCCcccCCCCCCCCCCChhHHHHHhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 001727 89 VAAAVVKKELDETLKPPLSANENLPYAGAATAPMKCVKQLNFDQAEQEQRVHDAVVKTSGEFEKAQKELEKNLREANERI 168 (1020)
Q Consensus 89 ~E~~~lK~qLe~~~~~~~~~e~rv~hld~A~~LKeCmrQLr~~rEEqEq~i~eav~~~s~e~ek~k~elE~kl~e~~~~l 168 (1020)
.|+.+|++.+..+...+-..|.|...++.- +|+|..||...||+..-.|-+-.+ | .
T Consensus 361 ~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k--~~k~~kel~~~~E~n~~l~knq~v-----w-----------------~ 416 (493)
T KOG0804|consen 361 TEADSLKQESSDLEAEKKIVERKLQQLQTK--LKKCQKELKEEREENKKLIKNQDV-----W-----------------R 416 (493)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhHHH-----H-----------------H
Confidence 455566666665555566667777777777 777777776666544333322221 1 1
Q ss_pred HHHHhhhHHhHHHHHHHHHHHHHHHHhhhhHhhHHHHHHhhhhhhHhh
Q 001727 169 AKLAAENSHLSKALLVKEKMIEDLSKRKSQAEAEFSTLMTRLDVTEKE 216 (1020)
Q Consensus 169 ~~~~aEn~~Ls~al~~k~~~i~el~~~k~~ae~e~~~l~~rLe~~eKe 216 (1020)
.++.-.+..+..++.+++..|.+|.++ +.+||.-|++-+|=
T Consensus 417 ~kl~~~~e~~~~~~~s~d~~I~dLqEQ-------lrDlmf~le~qqkl 457 (493)
T KOG0804|consen 417 GKLKELEEREKEALGSKDEKITDLQEQ-------LRDLMFFLEAQQKL 457 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHheehhhhhhh
Confidence 112222233344566777778777554 67788888776553
No 259
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=32.46 E-value=15 Score=45.84 Aligned_cols=20 Identities=40% Similarity=0.245 Sum_probs=0.0
Q ss_pred HHHhhhhhhHhhhhhhhhHH
Q 001727 205 TLMTRLDVTEKENAFLKYEF 224 (1020)
Q Consensus 205 ~l~~rLe~~eKen~sLkyE~ 224 (1020)
.+..|+.-+++||..|+-.+
T Consensus 456 ~l~erl~rLe~ENk~Lk~~~ 475 (713)
T PF05622_consen 456 ELRERLLRLEHENKRLKEKQ 475 (713)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 56677778888888887543
No 260
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=32.35 E-value=3.9e+02 Score=30.30 Aligned_cols=48 Identities=21% Similarity=0.252 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHH
Q 001727 715 QEENRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKA 762 (1020)
Q Consensus 715 ~eE~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~ 762 (1020)
-+.|-+|-.|..+++..=.+-...++-.-.|.+|+|..+..|..++..
T Consensus 112 gekI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k~~~ 159 (254)
T KOG2196|consen 112 GEKISGLYNEVVKVKLDQKRLDQELEFILSQQQELEDLLDPLETKLEL 159 (254)
T ss_pred cHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 367788889999988888888889999999999999999999888875
No 261
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=32.20 E-value=6.5e+02 Score=29.37 Aligned_cols=28 Identities=11% Similarity=0.175 Sum_probs=15.7
Q ss_pred hhhhHHHHHHhhhhhHHHHHHHHHHHHH
Q 001727 802 FSSLEVELEYRNNFCEELEATCLELQLQ 829 (1020)
Q Consensus 802 i~sLE~ELe~e~~~~eEl~AkC~ELqeQ 829 (1020)
+..|+-+++-.+..|.-+..+..+.+.+
T Consensus 344 ~~~L~r~~~~~~~~y~~ll~r~~e~~l~ 371 (444)
T TIGR03017 344 MSVLQRDVENAQRAYDAAMQRYTQTRIE 371 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555566666666666555443
No 262
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=32.17 E-value=3.1e+02 Score=28.56 Aligned_cols=49 Identities=14% Similarity=0.326 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHH
Q 001727 716 EENRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKE 768 (1020)
Q Consensus 716 eE~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~ 768 (1020)
.++..++.+++.+...|..++..++.++. .-.-+.+|++++..++..+.
T Consensus 20 ~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~----~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 20 AKVDKVKEERDNLKTQLKEADKQIKDLKK----SAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccCCHHHHHHHHHHHHHHHH
Confidence 44555555666666666555555554443 12234444555554444443
No 263
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=31.88 E-value=6.5e+02 Score=29.13 Aligned_cols=64 Identities=20% Similarity=0.240 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHhhhhHhhHHHHHHhhhhhhHhhhhhhhhHHHHHHHHH
Q 001727 161 LREANERIAKLAAENSHLSKALLVKEKMIEDLSKRKSQAEAEFSTLMTRLDVTEKENAFLKYEFRILEKEL 231 (1020)
Q Consensus 161 l~e~~~~l~~~~aEn~~Ls~al~~k~~~i~el~~~k~~ae~e~~~l~~rLe~~eKen~sLkyE~~~l~kEL 231 (1020)
..+-......+.-||..|..+...=++ .+.....++-.=...+.++|..+++.||.+..|+-||
T Consensus 55 ~e~ek~e~s~LkREnq~l~e~c~~lek-------~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqel 118 (307)
T PF10481_consen 55 VEEEKNEYSALKRENQSLMESCENLEK-------TRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQEL 118 (307)
T ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHH-------HHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344556677777777665543333 3333333333334445566666666666655555544
No 264
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=31.88 E-value=1e+03 Score=29.17 Aligned_cols=124 Identities=15% Similarity=0.197 Sum_probs=80.2
Q ss_pred hhhhHhhhhhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhhhhhhhhhHHHHhHHHHHHHHHHHhhhcCCCchHHHhhHHH
Q 001727 210 LDVTEKENAFLKYEFRILEKELEIRNEEMEYTRRSVEATHKQHLESVKKVAKLEAECERLRLLVRKKLPGSAASAKMKSE 289 (1020)
Q Consensus 210 Le~~eKen~sLkyE~~~l~kELeiR~~Ere~~~~sae~a~KQhlEsvKKiakLEaECqRLR~lvRKklPgpAala~Mk~E 289 (1020)
++.+.....+..|++.-+..+|.-.....+|+- ..+..++.....++.+.||.-|.+..+..-+.+
T Consensus 268 ~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp--------------~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~ 333 (563)
T TIGR00634 268 LRELAEQVGNALTEVEEATRELQNYLDELEFDP--------------ERLNEIEERLAQIKRLKRKYGASVEEVLEYAEK 333 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH--------------HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 344444444555555555555554444444433 235668999999999999999988777554444
Q ss_pred HHhhccchhhhhcccCCCCcccccccccCCCcchhh-HHHHHHhhHHhHHHHHHHHhhhhhhhhHHHhhhhhhhhhhhHH
Q 001727 290 VEMQGRDQMDMRRRKLSPTRDLIVRHATTESSHDIS-LLARLHDMEKENRTLKDIVITKSTELQASRMMFSRTASRLSYV 368 (1020)
Q Consensus 290 ve~lg~d~~e~rrr~~~~~~~~~~~~~~~~~~~~~~-lt~rL~~~EeEnk~LKe~Lakkn~ELQ~sr~m~a~taskLs~l 368 (1020)
.+.- .. ... ....+..++.+-..+++-+.+...+|-..|...|....+ .+
T Consensus 334 l~~e--------L~-------------------~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~~l~~--~v 384 (563)
T TIGR00634 334 IKEE--------LD-------------------QLDDSDESLEALEEEVDKLEEELDKAAVALSLIRRKAAERLAK--RV 384 (563)
T ss_pred HHHH--------HH-------------------HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 3220 00 011 335677778888888888888999999999888887764 56
Q ss_pred HHHHHHhh
Q 001727 369 ESQLREIC 376 (1020)
Q Consensus 369 e~ql~~ls 376 (1020)
..+|..|.
T Consensus 385 ~~~l~~L~ 392 (563)
T TIGR00634 385 EQELKALA 392 (563)
T ss_pred HHHHHhCC
Confidence 66666653
No 265
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=31.87 E-value=3.9e+02 Score=30.72 Aligned_cols=84 Identities=24% Similarity=0.341 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHhhhhHhhHHHHHHhhhhhhHh
Q 001727 136 EQRVHDAVVKTSGEFEKAQKELEKNLREANERIAKLAAENSHLSKALLVKEKMIEDLSKRKSQAEAEFSTLMTRLDVTEK 215 (1020)
Q Consensus 136 Eq~i~eav~~~s~e~ek~k~elE~kl~e~~~~l~~~~aEn~~Ls~al~~k~~~i~el~~~k~~ae~e~~~l~~rLe~~eK 215 (1020)
=.-.++++.+-..=|...+.+|| .+.+.+.++.-||..+-.--..-...|.++.+++..-..++..+...++.+++
T Consensus 225 f~efq~tL~kSNe~F~tfk~Eme----km~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~ 300 (309)
T PF09728_consen 225 FEEFQDTLNKSNEVFETFKKEME----KMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEK 300 (309)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578888888888888887765 45666677777777776666666778889999999999999999999999998
Q ss_pred hhhhhhhH
Q 001727 216 ENAFLKYE 223 (1020)
Q Consensus 216 en~sLkyE 223 (1020)
=|-+|+-|
T Consensus 301 LcRaLQ~e 308 (309)
T PF09728_consen 301 LCRALQAE 308 (309)
T ss_pred HHHHHhhC
Confidence 88887653
No 266
>PRK10869 recombination and repair protein; Provisional
Probab=31.26 E-value=1.1e+03 Score=29.20 Aligned_cols=122 Identities=11% Similarity=0.152 Sum_probs=85.3
Q ss_pred hhhhhHhhhhhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhhhhhhhhhHHHHhHHHHHHHHHHHhhhcCCCchHHHhhHH
Q 001727 209 RLDVTEKENAFLKYEFRILEKELEIRNEEMEYTRRSVEATHKQHLESVKKVAKLEAECERLRLLVRKKLPGSAASAKMKS 288 (1020)
Q Consensus 209 rLe~~eKen~sLkyE~~~l~kELeiR~~Ere~~~~sae~a~KQhlEsvKKiakLEaECqRLR~lvRKklPgpAala~Mk~ 288 (1020)
++..+-....++.|++.-+..+|.--....+|+ -..+..+|.-...|+.|-||.=|.+..+-..+.
T Consensus 262 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~d--------------p~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~ 327 (553)
T PRK10869 262 KLSGVLDMLEEALIQIQEASDELRHYLDRLDLD--------------PNRLAELEQRLSKQISLARKHHVSPEELPQHHQ 327 (553)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--------------HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 334444455556666666666665433333333 234567888899999999999998877755444
Q ss_pred HH----HhhccchhhhhcccCCCCcccccccccCCCcchhhHHHHHHhhHHhHHHHHHHHhhhhhhhhHHHhhhhhhhhh
Q 001727 289 EV----EMQGRDQMDMRRRKLSPTRDLIVRHATTESSHDISLLARLHDMEKENRTLKDIVITKSTELQASRMMFSRTASR 364 (1020)
Q Consensus 289 Ev----e~lg~d~~e~rrr~~~~~~~~~~~~~~~~~~~~~~lt~rL~~~EeEnk~LKe~Lakkn~ELQ~sr~m~a~task 364 (1020)
+. +.+.. +-+++..++.+-..+++.|.+...+|...|...|..-.+
T Consensus 328 ~l~~eL~~L~~------------------------------~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~~ 377 (553)
T PRK10869 328 QLLEEQQQLDD------------------------------QEDDLETLALAVEKHHQQALETAQKLHQSRQRYAKELAQ 377 (553)
T ss_pred HHHHHHHHhhC------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 22211 346677888889999999999999999999999987775
Q ss_pred hhHHHHHHHHhh
Q 001727 365 LSYVESQLREIC 376 (1020)
Q Consensus 365 Ls~le~ql~~ls 376 (1020)
.|..+|..|.
T Consensus 378 --~v~~~L~~L~ 387 (553)
T PRK10869 378 --LITESMHELS 387 (553)
T ss_pred --HHHHHHHHcC
Confidence 6788888774
No 267
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=31.20 E-value=6.9e+02 Score=27.77 Aligned_cols=54 Identities=13% Similarity=0.216 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhh
Q 001727 725 LKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMIEDQMENQK 778 (1020)
Q Consensus 725 k~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~ 778 (1020)
+...+..+..+..++..+..+....+..+..++.++..++..-..++.+++...
T Consensus 82 l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l~~a~~~~~r~~ 135 (334)
T TIGR00998 82 LAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQAREKLLQAELDLRRRV 135 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 333333344333333333334444444444444444444444444444444433
No 268
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=31.20 E-value=6e+02 Score=30.15 Aligned_cols=109 Identities=22% Similarity=0.235 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHH-HHHHhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHHH
Q 001727 719 RRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVK-ALKESKEMIEDQMENQKSINEDLDTQLTVAKAKLNE 797 (1020)
Q Consensus 719 e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~-~~keS~~l~E~Qle~~~~~~~~Let~L~~~e~E~~e 797 (1020)
..+.....++...+..--.....+..|+.+.+..|..-=.++. +..--...++.+..........+..+ -..+..
T Consensus 295 ~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~----~~~~~~ 370 (458)
T COG3206 295 AQVRQQIADLSTELGAKHPQLVALEAQLAELRQQIAAELRQILASLPNELALLEQQEAALEKELAQLKGR----LSKLPK 370 (458)
T ss_pred HHHHHHHHHHHHhhcccChHHHhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHH----HhhchH
Confidence 3333333444444544445555666666666666554333332 11111222333322222222222222 233556
Q ss_pred hhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHhh
Q 001727 798 GFQKFSSLEVELEYRNNFCEELEATCLELQLQLE 831 (1020)
Q Consensus 798 l~~Ki~sLE~ELe~e~~~~eEl~AkC~ELqeQLe 831 (1020)
..+++..|+-+++--+..|+.++.+++++..+.-
T Consensus 371 ~~~~l~~L~Re~~~~r~~ye~lL~r~qe~~~~~~ 404 (458)
T COG3206 371 LQVQLRELEREAEAARSLYETLLQRYQELSIQEA 404 (458)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6677888899999999999999999999999883
No 269
>PRK12705 hypothetical protein; Provisional
Probab=30.97 E-value=1.1e+03 Score=29.21 Aligned_cols=43 Identities=14% Similarity=0.267 Sum_probs=31.0
Q ss_pred hhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001727 129 NFDQAEQEQRVHDAVVKTSGEFEKAQKELEKNLREANERIAKL 171 (1020)
Q Consensus 129 r~~rEEqEq~i~eav~~~s~e~ek~k~elE~kl~e~~~~l~~~ 171 (1020)
..++.+-+....+++...-.++.+.+.++|..+.+....+...
T Consensus 40 ~~a~~~a~~~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~~~~~ 82 (508)
T PRK12705 40 QEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQRE 82 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666678888777888888888887777766665544
No 270
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=30.94 E-value=1.2e+03 Score=31.31 Aligned_cols=30 Identities=33% Similarity=0.498 Sum_probs=13.8
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhHHHHHH
Q 001727 732 LESATDRSEALVTQLHESEEQIGNLETEVK 761 (1020)
Q Consensus 732 L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~ 761 (1020)
+..+.+.++.++.++.|.+..+..|..+.+
T Consensus 260 ~~~~~d~~~~~~~~i~ele~~l~~l~~eke 289 (1200)
T KOG0964|consen 260 LDKVEDESEDLKCEIKELENKLTNLREEKE 289 (1200)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444433
No 271
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=30.78 E-value=4.8e+02 Score=25.97 Aligned_cols=69 Identities=22% Similarity=0.226 Sum_probs=55.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHhhhhHhhHHHHHHhhhhhhHhhhhhhhhHHHHH
Q 001727 148 GEFEKAQKELEKNLREANERIAKLAAENSHLSKALLVKEKMIEDLSKRKSQAEAEFSTLMTRLDVTEKENAFLKYEFRIL 227 (1020)
Q Consensus 148 ~e~ek~k~elE~kl~e~~~~l~~~~aEn~~Ls~al~~k~~~i~el~~~k~~ae~e~~~l~~rLe~~eKen~sLkyE~~~l 227 (1020)
.||-|+| ++..-+.+-+.+-.+-|..|..-|..|+..|. ..+.|+..|.=|-+-++|....|+.|+...
T Consensus 5 ~eYsKLr----aQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LR-------k~eqE~dSL~FrN~QL~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 5 QEYSKLR----AQNQVLKKAVIEEQAKNAELKEQLKEKEQALR-------KLEQENDSLTFRNQQLTKRVEVLQEELEES 73 (102)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555554 56777777788888888899999999998886 447788889999999999999999998854
No 272
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=30.72 E-value=1.2e+03 Score=29.48 Aligned_cols=51 Identities=20% Similarity=0.249 Sum_probs=43.1
Q ss_pred HHHHHHhhHHhHHHHHHHHhhhhhhhhHHHhhhhhhhhhhhHHHHHHHHhh
Q 001727 326 LLARLHDMEKENRTLKDIVITKSTELQASRMMFSRTASRLSYVESQLREIC 376 (1020)
Q Consensus 326 lt~rL~~~EeEnk~LKe~Lakkn~ELQ~sr~m~a~taskLs~le~ql~~ls 376 (1020)
..+++..-+.++-+|-+.+..+++-+-..+.....+-++|+.++......-
T Consensus 430 i~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k 480 (581)
T KOG0995|consen 430 ISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKK 480 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888999999999999999888888888888888888887766553
No 273
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=30.69 E-value=7.5e+02 Score=27.10 Aligned_cols=73 Identities=16% Similarity=0.261 Sum_probs=47.6
Q ss_pred HHHHhHHHHHHHhhhhh-hhhhhHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhHH-HHHHHHHHHHHhhhhc
Q 001727 762 ALKESKEMIEDQMENQK-SINEDLDTQLTVAKAKLNEGFQKFSSLEVELEYRNNFCEE-LEATCLELQLQLESVA 834 (1020)
Q Consensus 762 ~~keS~~l~E~Qle~~~-~~~~~Let~L~~~e~E~~el~~Ki~sLE~ELe~e~~~~eE-l~AkC~ELqeQLer~~ 834 (1020)
+.+.-...++.++.++. .+...+.++...+..-+..+..++..|+..+..++..... ++..+..|..+|....
T Consensus 60 ~~~~lq~~~e~~i~~~~~~v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~ 134 (247)
T PF06705_consen 60 SNKKLQSKFEEQINNMQERVENQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQ 134 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34444455666666655 2334455556666777778888888888888888666544 6667777777776544
No 274
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.59 E-value=5.4e+02 Score=29.40 Aligned_cols=49 Identities=18% Similarity=0.289 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q 001727 718 NRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKES 766 (1020)
Q Consensus 718 ~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS 766 (1020)
+.+=.+++.++....+-.+.+++.+..|..+...++.+++.++..++..
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~e 81 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAE 81 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666666666666666666666666666543333
No 275
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=30.01 E-value=1e+03 Score=30.79 Aligned_cols=96 Identities=22% Similarity=0.324 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhhhhHhHHHHHHHHH
Q 001727 715 QEENRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMIEDQMENQKSINEDLDTQLTVAKAK 794 (1020)
Q Consensus 715 ~eE~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~~~Let~L~~~e~E 794 (1020)
.-|+.+|++|-+.+-+.|+-...-++ ....++-. ...+|+..+.+..+.+|..+.....+-..+..+|.+++..
T Consensus 477 ~~ELqqLReERdRl~aeLqlSa~liq---qeV~~ArE---qgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~ 550 (739)
T PF07111_consen 477 SLELQQLREERDRLDAELQLSARLIQ---QEVGRARE---QGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKS 550 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34666677766655555532222110 00111111 2334555555566666666665555666666666666666
Q ss_pred HHHhhhhhhhhHHHHHHhhhhh
Q 001727 795 LNEGFQKFSSLEVELEYRNNFC 816 (1020)
Q Consensus 795 ~~el~~Ki~sLE~ELe~e~~~~ 816 (1020)
+.+.......|..||.....-|
T Consensus 551 lqes~eea~~lR~EL~~QQ~~y 572 (739)
T PF07111_consen 551 LQESTEEAAELRRELTQQQEVY 572 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666655666666666555433
No 276
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=29.99 E-value=6.6e+02 Score=32.09 Aligned_cols=8 Identities=25% Similarity=0.418 Sum_probs=4.3
Q ss_pred eEEEeccC
Q 001727 985 SLAVVPSK 992 (1020)
Q Consensus 985 slAIVP~K 992 (1020)
.++|+...
T Consensus 467 k~~I~~~~ 474 (670)
T KOG0239|consen 467 KLEIVDDA 474 (670)
T ss_pred ceeEEEcC
Confidence 55555544
No 277
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=29.73 E-value=6.9e+02 Score=27.59 Aligned_cols=94 Identities=22% Similarity=0.235 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhhhhHhHHHHHHHHHH
Q 001727 716 EENRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMIEDQMENQKSINEDLDTQLTVAKAKL 795 (1020)
Q Consensus 716 eE~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~~~Let~L~~~e~E~ 795 (1020)
-||--||.-+++...++..=...+=.++.|+.++-..+.....++..++.+..--.-.+ +..+.+|.....|+
T Consensus 10 GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~EL-------E~ce~ELqr~~~Ea 82 (202)
T PF06818_consen 10 GEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLEL-------EVCENELQRKKNEA 82 (202)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhH-------HHhHHHHHHHhCHH
Confidence 46777888888888887666666667888888887777777777776555433211111 22334555556677
Q ss_pred HHhhhhhhhhHHHHHHhhhhh
Q 001727 796 NEGFQKFSSLEVELEYRNNFC 816 (1020)
Q Consensus 796 ~el~~Ki~sLE~ELe~e~~~~ 816 (1020)
.-++.|+..||.|+..=+...
T Consensus 83 ~lLrekl~~le~El~~Lr~~l 103 (202)
T PF06818_consen 83 ELLREKLGQLEAELAELREEL 103 (202)
T ss_pred HHhhhhhhhhHHHHHHHHHHH
Confidence 777888888887777655444
No 278
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.65 E-value=1.5e+03 Score=30.11 Aligned_cols=85 Identities=19% Similarity=0.239 Sum_probs=59.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHhhhhHhhHHHHHHhhhh---------------
Q 001727 147 SGEFEKAQKELEKNLREANERIAKLAAENSHLSKALLVKEKMIEDLSKRKSQAEAEFSTLMTRLD--------------- 211 (1020)
Q Consensus 147 s~e~ek~k~elE~kl~e~~~~l~~~~aEn~~Ls~al~~k~~~i~el~~~k~~ae~e~~~l~~rLe--------------- 211 (1020)
-..+.-+..+|..++..+.+...++.-||..|-..++.. ..+.++-.-++..|..+|.
T Consensus 659 ~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~-------~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~ 731 (970)
T KOG0946|consen 659 QQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDF-------ISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEA 731 (970)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhcccccchhhHHhHHHh
Confidence 344666667888888888888888888888776665543 3444455555556665554
Q ss_pred --hhHhhhhhhhhHHHHHHHHHhhhhhhh
Q 001727 212 --VTEKENAFLKYEFRILEKELEIRNEEM 238 (1020)
Q Consensus 212 --~~eKen~sLkyE~~~l~kELeiR~~Er 238 (1020)
...+|++++.||...+.-+.+.-+.|+
T Consensus 732 ~~t~~eel~a~~~e~k~l~~~q~~l~~~L 760 (970)
T KOG0946|consen 732 SKTQNEELNAALSENKKLENDQELLTKEL 760 (970)
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456889999999998887777666666
No 279
>KOG3215 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.40 E-value=7.1e+02 Score=27.75 Aligned_cols=35 Identities=26% Similarity=0.166 Sum_probs=26.2
Q ss_pred hcCcchHHHHHHHHHHHhhhccCcchhhHHHHHHH
Q 001727 62 DCHPKDELMAKQAKLVQEAGAGQEKPEVAAAVVKK 96 (1020)
Q Consensus 62 ~~~~Kd~lvkqhaKvaeEAv~GwEKae~E~~~lK~ 96 (1020)
+=..-|-+|++|+|.--.++..-+|-+.++..-++
T Consensus 27 e~~~~dr~v~~l~ksf~~~~~E~~kee~~y~ea~r 61 (222)
T KOG3215|consen 27 EGDGGDRLVEHLEKSFVLAKAEIEKEEKEYSEAKR 61 (222)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHhhhhhhchhHHHH
Confidence 34456789999999999999888888855554433
No 280
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=29.29 E-value=1.5e+03 Score=30.31 Aligned_cols=109 Identities=21% Similarity=0.248 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHhhhhHh---hHHHHHHhhhhhhHhhhhhhhhHHHHHHHH
Q 001727 154 QKELEKNLREANERIAKLAAENSHLSKALLVKEKMIEDLSKRKSQAE---AEFSTLMTRLDVTEKENAFLKYEFRILEKE 230 (1020)
Q Consensus 154 k~elE~kl~e~~~~l~~~~aEn~~Ls~al~~k~~~i~el~~~k~~ae---~e~~~l~~rLe~~eKen~sLkyE~~~l~kE 230 (1020)
|..+-++.++++++|.+++.|.. .++..+++.-.++.+-..-.| -+-+-...|-++++-|.-+||--+..++-+
T Consensus 271 kSkim~qqa~Lqrel~raR~e~k---eaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletd 347 (1243)
T KOG0971|consen 271 KSKIMEQQADLQRELKRARKEAK---EAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETD 347 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444677888888888877754 455666666665554322222 122334567777777777777777788888
Q ss_pred HhhhhhhhhhhhhhHHHhhhhhhhhhHHHHhHHHHHHHHHH
Q 001727 231 LEIRNEEMEYTRRSVEATHKQHLESVKKVAKLEAECERLRL 271 (1020)
Q Consensus 231 LeiR~~Ere~~~~sae~a~KQhlEsvKKiakLEaECqRLR~ 271 (1020)
|||-..|.+----.+-+++- --.-.||--=+||+-
T Consensus 348 lEILKaEmeekG~~~~~~ss------~qfkqlEqqN~rLKd 382 (1243)
T KOG0971|consen 348 LEILKAEMEEKGSDGQAASS------YQFKQLEQQNARLKD 382 (1243)
T ss_pred HHHHHHHHHhcCCCCcccch------HHHHHHHHHHHHHHH
Confidence 88888777654322222222 223456666666663
No 281
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=29.26 E-value=1.2e+03 Score=28.94 Aligned_cols=41 Identities=15% Similarity=0.179 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHHhhhhcCCcccHHHHHHHHHHHHHHHHhh
Q 001727 625 SELHAVLQKFVCACNDLLGGKADLDKFAEELSSALDWIMNN 665 (1020)
Q Consensus 625 sEL~~~Le~f~~~C~dvL~gka~le~f~~EL~~~L~wi~n~ 665 (1020)
.+....|..-+-..|+++..+..-..+|.+..-.+.-.++|
T Consensus 277 ~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~ 317 (560)
T PF06160_consen 277 EEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEH 317 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 44555666666778888888888777776665555544444
No 282
>PF15456 Uds1: Up-regulated During Septation
Probab=29.12 E-value=5.8e+02 Score=25.89 Aligned_cols=45 Identities=27% Similarity=0.314 Sum_probs=30.1
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHH
Q 001727 711 QSNLQEENRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKAL 763 (1020)
Q Consensus 711 q~~~~eE~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~ 763 (1020)
+.-+.||++.||-|...|..++.....++ . +|.++...-.-|..+
T Consensus 17 eiLs~eEVe~LKkEl~~L~~R~~~lr~kl-------~-le~k~RdAa~sl~~l 61 (124)
T PF15456_consen 17 EILSFEEVEELKKELRSLDSRLEYLRRKL-------A-LESKIRDAAHSLSRL 61 (124)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHH-------H-HHHHHHHHHHHHHHh
Confidence 34467999999999888888875555544 2 555565555555444
No 283
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=28.97 E-value=9.1e+02 Score=27.54 Aligned_cols=195 Identities=21% Similarity=0.226 Sum_probs=112.7
Q ss_pred hhhhhhHHHHHHHHHhhcCc---c--hHHHHHHHH--HHHhhhccCc-----chhhHHHHHHHHhhhhcCCCCcccCCCC
Q 001727 46 ERSMKNLNEQLASVIFDCHP---K--DELMAKQAK--LVQEAGAGQE-----KPEVAAAVVKKELDETLKPPLSANENLP 113 (1020)
Q Consensus 46 ~~~~k~LnekLs~al~~~~~---K--d~lvkqhaK--vaeEAv~GwE-----Kae~E~~~lK~qLe~~~~~~~~~e~rv~ 113 (1020)
+..+..+|..|..+.-++-. + ..|+-||-+ -|-..+--|- -|.+|.-+.+...+.-+ ..++..+.
T Consensus 15 ~~~L~~~N~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l---~~Lq~ql~ 91 (258)
T PF15397_consen 15 EDFLTKLNKELIKEIQDTEDSTALKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEESKL---SKLQQQLE 91 (258)
T ss_pred HHHHHHhhHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHhHH---HHHHHHHH
Confidence 55677788888877765421 1 134444432 2333443443 34455555544443322 34667777
Q ss_pred CCCCCCChhHHHHHhhhhhh--hhHHHHHH-HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHH
Q 001727 114 YAGAATAPMKCVKQLNFDQA--EQEQRVHD-AVVKTSGEFEKAQKELEKNLREANERIAKLAAENSHLSKALLVKEKMIE 190 (1020)
Q Consensus 114 hld~A~~LKeCmrQLr~~rE--EqEq~i~e-av~~~s~e~ek~k~elE~kl~e~~~~l~~~~aEn~~Ls~al~~k~~~i~ 190 (1020)
.||+- ++.--++|++++- ++|.=+.- -|+.-.++.+.++...+..+.+++.-+. .+=..|++..+.+.+-|.
T Consensus 92 ~l~ak--I~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~e~~~---~el~~l~~~~q~k~~~il 166 (258)
T PF15397_consen 92 QLDAK--IQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDELNEMRQ---MELASLSRKIQEKKEEIL 166 (258)
T ss_pred HHHHH--HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 88887 7777777777653 24444443 4556678888888888888888876543 333456666665554443
Q ss_pred HHHHhhhhHhhHHHHHHhhhhhhHhhhhhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhhhhhhhhhHHHHhHHHHHHHHH
Q 001727 191 DLSKRKSQAEAEFSTLMTRLDVTEKENAFLKYEFRILEKELEIRNEEMEYTRRSVEATHKQHLESVKKVAKLEAECERLR 270 (1020)
Q Consensus 191 el~~~k~~ae~e~~~l~~rLe~~eKen~sLkyE~~~l~kELeiR~~Ere~~~~sae~a~KQhlEsvKKiakLEaECqRLR 270 (1020)
. +.++.-+......|-..-.+|..+++|+..-.++.+ +--..|.+|.||.+.|+
T Consensus 167 ~-----~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~---------------------el~e~I~~L~~eV~~L~ 220 (258)
T PF15397_consen 167 S-----SAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEID---------------------ELEEEIPQLRAEVEQLQ 220 (258)
T ss_pred H-----HHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHH
Confidence 1 122222233333333334778888887765544432 11235788999999888
Q ss_pred HHhh
Q 001727 271 LLVR 274 (1020)
Q Consensus 271 ~lvR 274 (1020)
..++
T Consensus 221 ~~~~ 224 (258)
T PF15397_consen 221 AQAQ 224 (258)
T ss_pred Hhhc
Confidence 8876
No 284
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=28.31 E-value=1.7e+02 Score=29.01 Aligned_cols=67 Identities=12% Similarity=0.260 Sum_probs=42.9
Q ss_pred hhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHhhhhHhhHHHHHH
Q 001727 128 LNFDQAEQEQRVHDAVVKTSGEFEKAQKELEKNLREANERIAKLAAENSHLSKALLVKEKMIEDLSKRKSQAEAEFSTLM 207 (1020)
Q Consensus 128 Lr~~rEEqEq~i~eav~~~s~e~ek~k~elE~kl~e~~~~l~~~~aEn~~Ls~al~~k~~~i~el~~~k~~ae~e~~~l~ 207 (1020)
+..++++.+..+.++.......|+++..-++.++..+=.+|- . -...++..|.
T Consensus 50 ~~~~~e~~~~~~~~~~~~~~~~~~~le~~~~~~v~~~L~~lg---~------------------------~tk~ev~~L~ 102 (118)
T TIGR01837 50 VDAAREEVKTALEQTRDQVQRNWDKLEKAFDERVEQALNRLN---I------------------------PSREEIEALS 102 (118)
T ss_pred HHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcC---C------------------------CCHHHHHHHH
Confidence 355667777778877777777787777777776655533331 0 1234666777
Q ss_pred hhhhhhHhhhhhhh
Q 001727 208 TRLDVTEKENAFLK 221 (1020)
Q Consensus 208 ~rLe~~eKen~sLk 221 (1020)
.|++.++.....|+
T Consensus 103 ~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 103 AKIEQLAVQVEELR 116 (118)
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777666554
No 285
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.26 E-value=6.1e+02 Score=28.59 Aligned_cols=61 Identities=15% Similarity=0.285 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhh
Q 001727 715 QEENRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMIEDQME 775 (1020)
Q Consensus 715 ~eE~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle 775 (1020)
+.|.+.|+..+..-+.++...++=++.-....--.|+.|..+|++|+.+...+++.+..+.
T Consensus 57 ~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~d 117 (246)
T KOG4657|consen 57 QVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEVLRRNLQLLKEEKD 117 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566666666655555555555433333334445667777777777777766666665544
No 286
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=28.15 E-value=6.1e+02 Score=26.78 Aligned_cols=84 Identities=17% Similarity=0.237 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH----HHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhhhhHhHHHHHH
Q 001727 716 EENRRLRDELKSMAARLESATDRSEALVTQLH----ESEEQIGNLETEVKALKESKEMIEDQMENQKSINEDLDTQLTVA 791 (1020)
Q Consensus 716 eE~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~----E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~~~Let~L~~~ 791 (1020)
.|++.|+.+...|.....+-...-......+. ..++....|++++..++..+..++..+++...-...|+.+-..+
T Consensus 50 ~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l 129 (158)
T PF09744_consen 50 VELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAEL 129 (158)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHH
Confidence 35556666655555444332222222222333 33444556777777777777777777766554434444433333
Q ss_pred HHHHHHhh
Q 001727 792 KAKLNEGF 799 (1020)
Q Consensus 792 e~E~~el~ 799 (1020)
..+.+.++
T Consensus 130 ~~e~~~l~ 137 (158)
T PF09744_consen 130 KKEYNRLH 137 (158)
T ss_pred HHHHHHHH
Confidence 33344443
No 287
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=28.12 E-value=20 Score=44.83 Aligned_cols=134 Identities=15% Similarity=0.231 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhHHHHHH
Q 001727 743 VTQLHESEEQIGNLETEVKALKESKEMIEDQMENQKSINEDLDTQLTVAKAKLNEGFQKFSSLEVELEYRNNFCEELEAT 822 (1020)
Q Consensus 743 ~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~~~Let~L~~~e~E~~el~~Ki~sLE~ELe~e~~~~eEl~Ak 822 (1020)
..++.+++..|..|+.+...+...+..+-..+..-...... .-..+..+...+..++..|..|+.+.-..-.++..+
T Consensus 192 ~q~~~el~~~i~~L~~e~~~L~~e~~~l~~~~~~~~~~~~~---~~~~~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~ 268 (713)
T PF05622_consen 192 AQRCHELEKQISDLQEEKESLQSENEELQERLSQLEGSSEE---PSQHLSVELADLRAQLRRLREELERLEEQRDDLKIE 268 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhHHHhhhhhhhhhcccCCCCCCCCC---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666555544443332211100000 011112334444555555555554433333444555
Q ss_pred HHHHHHHhhhhccCCCCCCCCCccccccchhhhHH-HHhhhHHHHHHHHHHHHHHHhh
Q 001727 823 CLELQLQLESVAKREPPSYGVNQGEKQSQNGWEMT-AASIKLAECQETILNLGKQLKA 879 (1020)
Q Consensus 823 C~ELqeQLer~~~~~~~~~~~~~e~~~~k~e~EIa-aAAeKLAECQETI~nLGKQLKA 879 (1020)
|.+++.++.....+..--...+.+-..++-|-++. ..|+|+.=+.-+|...-+.|..
T Consensus 269 ~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed 326 (713)
T PF05622_consen 269 LEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLED 326 (713)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555443332111112223333444443322 2244555455555444444433
No 288
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=28.08 E-value=48 Score=37.03 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=21.7
Q ss_pred hhhhhhhhHHHHhHHHHHHHHHHHh
Q 001727 249 HKQHLESVKKVAKLEAECERLRLLV 273 (1020)
Q Consensus 249 ~KQhlEsvKKiakLEaECqRLR~lv 273 (1020)
..=..+.++||+.||.|..|||+.+
T Consensus 114 ~~~~~~AlqKIsALEdELs~LRaQI 138 (253)
T PF05308_consen 114 LPANEAALQKISALEDELSRLRAQI 138 (253)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3446788999999999999999987
No 289
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=28.05 E-value=1.5e+03 Score=29.65 Aligned_cols=48 Identities=25% Similarity=0.304 Sum_probs=23.2
Q ss_pred HHHHhhhhhhhhhhhhhHHHhhhhhhhhhHHHHhHHHHHHHHHHHhhh
Q 001727 228 EKELEIRNEEMEYTRRSVEATHKQHLESVKKVAKLEAECERLRLLVRK 275 (1020)
Q Consensus 228 ~kELeiR~~Ere~~~~sae~a~KQhlEsvKKiakLEaECqRLR~lvRK 275 (1020)
.+.+++-..+..--...-+.+..+--+..+..+.++.+|..++..+.+
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~ 435 (908)
T COG0419 388 EEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKK 435 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344443333333444444445555566666666665555443
No 290
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=27.89 E-value=2.6e+02 Score=25.25 Aligned_cols=87 Identities=16% Similarity=0.243 Sum_probs=55.7
Q ss_pred HHHHhHHHHHHHHHHHhhhcCCCchHHHhhHHHHHhhccchhhhhcccCCCCcccccccccCCCcchhh-HHHHHHhhHH
Q 001727 257 KKVAKLEAECERLRLLVRKKLPGSAASAKMKSEVEMQGRDQMDMRRRKLSPTRDLIVRHATTESSHDIS-LLARLHDMEK 335 (1020)
Q Consensus 257 KKiakLEaECqRLR~lvRKklPgpAala~Mk~Eve~lg~d~~e~rrr~~~~~~~~~~~~~~~~~~~~~~-lt~rL~~~Ee 335 (1020)
..|++++..+.+|+.+-++.|..|..=..++.|++.+..+.. + ... +-.+|..|+.
T Consensus 14 ~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~---~--------------------~~~~~~~~lk~l~~ 70 (103)
T PF00804_consen 14 EDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIK---Q--------------------LFQKIKKRLKQLSK 70 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHH---H--------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHH---H--------------------HHHHHHHHHHHHHH
Confidence 358899999999999999988777533456777766544311 1 012 5566666666
Q ss_pred hHHHHHHHHhhhhhhhhHHHhhhhhhhhhhhH
Q 001727 336 ENRTLKDIVITKSTELQASRMMFSRTASRLSY 367 (1020)
Q Consensus 336 Enk~LKe~Lakkn~ELQ~sr~m~a~taskLs~ 367 (1020)
.+. ..+......++.+.-++.|+.-..|+..
T Consensus 71 ~~~-~~~~~~~~~~~~ri~~nq~~~L~~kf~~ 101 (103)
T PF00804_consen 71 DNE-DSEGEEPSSNEVRIRKNQVQALSKKFQE 101 (103)
T ss_dssp HHH-HHHCTT--SHHHHHHHHHHHHHHHHHHH
T ss_pred Hhh-hhcccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 655 3444556667777777777777766653
No 291
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=27.86 E-value=2.6e+02 Score=26.62 Aligned_cols=65 Identities=15% Similarity=0.225 Sum_probs=40.0
Q ss_pred HHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhh-----------hhhHhHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 001727 747 HESEEQIGNLETEVKALKESKEMIEDQMENQKSI-----------NEDLDTQLTVAKAKLNEGFQKFSSLEVELEY 811 (1020)
Q Consensus 747 ~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~-----------~~~Let~L~~~e~E~~el~~Ki~sLE~ELe~ 811 (1020)
..+|+-|..||.+|.-=..-...+|.-+.+.... ...|-..+..+|.|+-.+-+++.+|-..+-+
T Consensus 11 ~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~~L~~~l~~ 86 (88)
T PF14389_consen 11 SALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKVLSLYRQLFQ 86 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566667777777765555666666666554321 1445566666677777777777776555543
No 292
>PRK10698 phage shock protein PspA; Provisional
Probab=27.17 E-value=8.6e+02 Score=26.65 Aligned_cols=112 Identities=14% Similarity=0.177 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHH-HHHHhH-HHHHH----HhhhhhhhhhhHhHHHHHH
Q 001727 718 NRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVK-ALKESK-EMIED----QMENQKSINEDLDTQLTVA 791 (1020)
Q Consensus 718 ~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~-~~keS~-~l~E~----Qle~~~~~~~~Let~L~~~ 791 (1020)
|.++++.+.++...++.+.-....+..++.+.+..+...+..-. +++..+ .++-. ...+ ......|+.++...
T Consensus 33 i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~-~~~~~~l~~~~~~~ 111 (222)
T PRK10698 33 IQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKL-TDLIATLEHEVTLV 111 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 44566666666666777666666777777777777777665553 222222 22222 1111 12334577777777
Q ss_pred HHHHHHhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHh
Q 001727 792 KAKLNEGFQKFSSLEVELEYRNNFCEELEATCLELQLQL 830 (1020)
Q Consensus 792 e~E~~el~~Ki~sLE~ELe~e~~~~eEl~AkC~ELqeQL 830 (1020)
..-+..+..++..|+..|++=+.-...+.++.+--+-+.
T Consensus 112 ~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~ 150 (222)
T PRK10698 112 DETLARMKKEIGELENKLSETRARQQALMLRHQAASSSR 150 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888888888888877777777777766544443
No 293
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=27.15 E-value=4.1e+02 Score=32.16 Aligned_cols=63 Identities=22% Similarity=0.331 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHhhh--------hHhhHHHHHHhhhhhhHhhhhhhhh
Q 001727 156 ELEKNLREANERIAKLAAENSHLSKALLVKEKMIEDLSKRKS--------QAEAEFSTLMTRLDVTEKENAFLKY 222 (1020)
Q Consensus 156 elE~kl~e~~~~l~~~~aEn~~Ls~al~~k~~~i~el~~~k~--------~ae~e~~~l~~rLe~~eKen~sLky 222 (1020)
+|+.+|.++..+++++.++..+ ++.+-+++..+..... .....+..+..-++++..+...|.-
T Consensus 75 ~l~~~l~~l~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (525)
T TIGR02231 75 ELRKQIRELEAELRDLEDRGDA----LKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLT 145 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777666553 4444466666653210 0122344555555555555544443
No 294
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=26.86 E-value=5.6e+02 Score=34.40 Aligned_cols=100 Identities=17% Similarity=0.268 Sum_probs=55.6
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhhhhHhHHHH
Q 001727 710 SQSNLQEENRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMIEDQMENQKSINEDLDTQLT 789 (1020)
Q Consensus 710 ~q~~~~eE~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~~~Let~L~ 789 (1020)
-|......++.++..+.+++. .++.++.+-..++..|.+. .++.. ++++..++-.....+.+ ..+.
T Consensus 801 ~~~d~~~~ve~~~~~v~~~~~-------~~~~~~~~e~~~~k~i~e~-~~~e~--k~k~~~~~~~~e~~e~~----k~~~ 866 (1141)
T KOG0018|consen 801 KQKDTQRRVERWERSVEDLEK-------EIEGLKKDEEAAEKIIAEI-EELEK--KNKSKFEKKEDEINEVK----KILR 866 (1141)
T ss_pred ecccHHHHHHHHHHHHHHHHH-------hHHhhHHHHHHHHHHHhhH-HHHHH--HHHHHHHHHHHHHHHHH----HHHH
Confidence 355555556665555444444 4455666666677777777 66665 33555554444333333 2334
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHhhhhhHHHHHHH
Q 001727 790 VAKAKLNEGFQKFSSLEVELEYRNNFCEELEATC 823 (1020)
Q Consensus 790 ~~e~E~~el~~Ki~sLE~ELe~e~~~~eEl~AkC 823 (1020)
.+-.++..+.+.|.++|..|+....--..++-+|
T Consensus 867 ~~~~~~tkl~~~i~~~es~ie~~~~er~~lL~~c 900 (1141)
T KOG0018|consen 867 RLVKELTKLDKEITSIESKIERKESERHNLLSKC 900 (1141)
T ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHh
Confidence 4455666666666666666666554444555555
No 295
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=26.84 E-value=1.7e+03 Score=30.09 Aligned_cols=88 Identities=20% Similarity=0.238 Sum_probs=56.9
Q ss_pred hhHHHHHhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHH-----HHHHHHHHHHH-------HHHhhhHHhHHHHHHHHHH
Q 001727 121 PMKCVKQLNFDQAEQEQRVHDAVVKTSGEFEKAQKELE-----KNLREANERIA-------KLAAENSHLSKALLVKEKM 188 (1020)
Q Consensus 121 LKeCmrQLr~~rEEqEq~i~eav~~~s~e~ek~k~elE-----~kl~e~~~~l~-------~~~aEn~~Ls~al~~k~~~ 188 (1020)
|+.-=..||..-+|.|. ..+-++|++.|.-|| ..+.|+..++. .+.-++..+.-+++.++..
T Consensus 193 l~yieerLreLEeEKee------L~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~ 266 (1200)
T KOG0964|consen 193 LKYIEERLRELEEEKEE------LEKYQKLDKERRSLEYTIYDRELNEINGELERLEEDRSSAPEESEQYIDALDKVEDE 266 (1200)
T ss_pred HHHHHHHHHHHHHhHHH------HHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHH
Confidence 33333445655555543 244678888888877 44555555444 3445677778888888888
Q ss_pred HHHHHHhhhhHhhHHHHHHhhhhhhH
Q 001727 189 IEDLSKRKSQAEAEFSTLMTRLDVTE 214 (1020)
Q Consensus 189 i~el~~~k~~ae~e~~~l~~rLe~~e 214 (1020)
+..|.......+..+..|..-.+.++
T Consensus 267 ~~~~~~~i~ele~~l~~l~~ekeq~~ 292 (1200)
T KOG0964|consen 267 SEDLKCEIKELENKLTNLREEKEQLK 292 (1200)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888877776665444433
No 296
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.79 E-value=2.2e+02 Score=32.90 Aligned_cols=76 Identities=20% Similarity=0.232 Sum_probs=45.1
Q ss_pred hhhHhhHHHHHHhhhhhhHhhhhhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhhhhhhhhhHHHHhHHHHHHHHHHHh--
Q 001727 196 KSQAEAEFSTLMTRLDVTEKENAFLKYEFRILEKELEIRNEEMEYTRRSVEATHKQHLESVKKVAKLEAECERLRLLV-- 273 (1020)
Q Consensus 196 k~~ae~e~~~l~~rLe~~eKen~sLkyE~~~l~kELeiR~~Ere~~~~sae~a~KQhlEsvKKiakLEaECqRLR~lv-- 273 (1020)
+.+.+..+..+...+..++.+.+.+.-.+-..+. ||++.-++....+-+.+ .-|-|||.|..++..+|
T Consensus 124 k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~---------Els~~L~~l~~~~~~~s-~~~~k~esei~~Ik~lvln 193 (300)
T KOG2629|consen 124 KRQLDDQFDKAAKSLNALMDEVAQVSQLLATQQS---------ELSRALASLKNTLVQLS-RNIEKLESEINTIKQLVLN 193 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHhc
Confidence 3334444555555555555555555444444443 56666666666655443 45889999999999887
Q ss_pred hhcCCCch
Q 001727 274 RKKLPGSA 281 (1020)
Q Consensus 274 RKklPgpA 281 (1020)
|+-+++|.
T Consensus 194 ~~~f~~p~ 201 (300)
T KOG2629|consen 194 MSNFAPPV 201 (300)
T ss_pred ccccCCCC
Confidence 44455543
No 297
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=26.61 E-value=5.8e+02 Score=27.77 Aligned_cols=16 Identities=19% Similarity=0.061 Sum_probs=7.4
Q ss_pred HHHHHHHHHHhhhhhh
Q 001727 788 LTVAKAKLNEGFQKFS 803 (1020)
Q Consensus 788 L~~~e~E~~el~~Ki~ 803 (1020)
|..++..-.++..|.-
T Consensus 177 L~~Le~~W~~~v~kn~ 192 (221)
T PF05700_consen 177 LRYLEQRWKELVSKNL 192 (221)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444445544443
No 298
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.32 E-value=59 Score=35.44 Aligned_cols=26 Identities=38% Similarity=0.562 Sum_probs=24.5
Q ss_pred hHHHHhHHHHHHHHHHHhhhcCCCch
Q 001727 256 VKKVAKLEAECERLRLLVRKKLPGSA 281 (1020)
Q Consensus 256 vKKiakLEaECqRLR~lvRKklPgpA 281 (1020)
-+||++|+||...+|--+.|.-||||
T Consensus 32 e~KIskLDaeL~k~~~Qi~k~R~gpa 57 (218)
T KOG1655|consen 32 EKKISKLDAELCKYKDQIKKTRPGPA 57 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 37999999999999999999999997
No 299
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=26.28 E-value=1.1e+03 Score=28.62 Aligned_cols=45 Identities=31% Similarity=0.285 Sum_probs=34.4
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHH
Q 001727 142 AVVKTSGEFEKAQKELEKNLREANERIAKLAAENSHLSKALLVKE 186 (1020)
Q Consensus 142 av~~~s~e~ek~k~elE~kl~e~~~~l~~~~aEn~~Ls~al~~k~ 186 (1020)
|+.+--.+|+.++-+|+.++..+-++++.+.-.-.+|.++|..|+
T Consensus 275 af~~ri~etqdar~kL~~ql~k~leEi~~~e~~I~~le~airdK~ 319 (421)
T KOG2685|consen 275 AFKKRIRETQDARNKLEWQLAKTLEEIADAENNIEALERAIRDKE 319 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccc
Confidence 445566889999999999999998888777666666777766554
No 300
>PRK11519 tyrosine kinase; Provisional
Probab=25.29 E-value=9.1e+02 Score=30.66 Aligned_cols=35 Identities=20% Similarity=0.155 Sum_probs=26.2
Q ss_pred hhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHhhh
Q 001727 798 GFQKFSSLEVELEYRNNFCEELEATCLELQLQLES 832 (1020)
Q Consensus 798 l~~Ki~sLE~ELe~e~~~~eEl~AkC~ELqeQLer 832 (1020)
..+.+..|+-+.+-.+..|..++.|..|+..+...
T Consensus 368 ~e~~~~~L~Re~~~~~~lY~~lL~r~~e~~i~~a~ 402 (719)
T PRK11519 368 TQQEIVRLTRDVESGQQVYMQLLNKQQELKITEAS 402 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcC
Confidence 34445677788888888999999999998766543
No 301
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=25.28 E-value=3.8e+02 Score=26.11 Aligned_cols=52 Identities=21% Similarity=0.357 Sum_probs=31.9
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHhhHHHHHHH
Q 001727 711 QSNLQEENRRLRDELKSMAARLESATDRSEAL--VTQLHESEEQIGNLETEVKA 762 (1020)
Q Consensus 711 q~~~~eE~e~Lk~ek~~le~~L~~~~~~~E~~--~~ql~E~E~~i~~LqsEL~~ 762 (1020)
.++..+++++|.+.....+.+++.....++.+ ...++..+-.|.+++-++..
T Consensus 30 ~~a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~ 83 (106)
T PF10805_consen 30 TYAKREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKE 83 (106)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHH
Confidence 45567888888777777777765555555444 55555555555555544444
No 302
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=25.19 E-value=1.5e+03 Score=28.88 Aligned_cols=44 Identities=20% Similarity=0.225 Sum_probs=31.9
Q ss_pred HHHHHHhhHHhHHHHHHHHhhhhhhhhHHHhhhhhhhhhhhHHHH
Q 001727 326 LLARLHDMEKENRTLKDIVITKSTELQASRMMFSRTASRLSYVES 370 (1020)
Q Consensus 326 lt~rL~~~EeEnk~LKe~Lakkn~ELQ~sr~m~a~taskLs~le~ 370 (1020)
+..++.++|-++++.+..|..--..|| +|+-|-.---.|+.|.+
T Consensus 315 ~~~qI~~le~~l~~~~~~leel~~kL~-~~sDYeeIK~ELsiLk~ 358 (629)
T KOG0963|consen 315 HKAQISALEKELKAKISELEELKEKLN-SRSDYEEIKKELSILKA 358 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-hhccHHHHHHHHHHHHH
Confidence 667788888888888877777777775 35777776667776643
No 303
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=25.18 E-value=2.2e+03 Score=30.87 Aligned_cols=284 Identities=20% Similarity=0.255 Sum_probs=169.1
Q ss_pred CccchhhhhhHHHHHHHHHhh-cCcchHHHHHHHHHHHhhhccCcchhhH----HHHHHHHhhhhcCCCCcccCCC--CC
Q 001727 42 GVGSERSMKNLNEQLASVIFD-CHPKDELMAKQAKLVQEAGAGQEKPEVA----AAVVKKELDETLKPPLSANENL--PY 114 (1020)
Q Consensus 42 ~~~~~~~~k~LnekLs~al~~-~~~Kd~lvkqhaKvaeEAv~GwEKae~E----~~~lK~qLe~~~~~~~~~e~rv--~h 114 (1020)
.+++-..|+.|.+++-++--. -...-..++.|..-|-++|+--++--++ +.+|=.+.|-.-..-+..++-. .|
T Consensus 541 N~eLL~~vR~Lae~lE~~E~~~~~~~~~~~k~~~~~a~e~i~~L~~~l~e~~~~i~sLl~erd~y~e~l~~~e~~~~~k~ 620 (1822)
T KOG4674|consen 541 NVELLNAVRELAEKLEAAEKTQDKTLQNILKETINEASEKIAELEKELEEQEQRIESLLTERDMYKELLAELEDSHQLKP 620 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCC
Confidence 335556799999999888766 3445567899999999999877665443 2333333333321112222221 11
Q ss_pred ---------CCCCCChhHHHHH----hhhhhhhh---HHHHHHH-------HHHhhhhHHHHHHH----------HHHHH
Q 001727 115 ---------AGAATAPMKCVKQ----LNFDQAEQ---EQRVHDA-------VVKTSGEFEKAQKE----------LEKNL 161 (1020)
Q Consensus 115 ---------ld~A~~LKeCmrQ----Lr~~rEEq---Eq~i~ea-------v~~~s~e~ek~k~e----------lE~kl 161 (1020)
.++| +..-+|| |+..++|. ++..++. +..+..+.+++... |+.-|
T Consensus 621 nss~~~~t~~~~~--~e~~l~qLe~~le~~~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~i 698 (1822)
T KOG4674|consen 621 NSSALDQTEAPRA--KEKRLRQLENELESYKKEKRENLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNL 698 (1822)
T ss_pred Cchhhcccccchh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 1222 2333333 33333332 2222222 22333333333222 12233
Q ss_pred HHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHhhhhHhhHHHHHHhhhhhhHhhhhhhh-----------------hHH
Q 001727 162 REANERIAKLAAENSHLSKALLVKEKMIEDLSKRKSQAEAEFSTLMTRLDVTEKENAFLK-----------------YEF 224 (1020)
Q Consensus 162 ~e~~~~l~~~~aEn~~Ls~al~~k~~~i~el~~~k~~ae~e~~~l~~rLe~~eKen~sLk-----------------yE~ 224 (1020)
.-+..+...+.+-|..|...+......+..++.+..++...+..|.+.++.+-+|+..|+ |.+
T Consensus 699 e~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L 778 (1822)
T KOG4674|consen 699 ELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESL 778 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445566677788899999999999999999999999999999999999998886554 455
Q ss_pred HHHHHHHhhhhhhhhhhhhhHHHhhhhhhhhhHHHHhHHHHHHHHHHHhhhcCCCchHHHhhHHHHHhhccchhhhhccc
Q 001727 225 RILEKELEIRNEEMEYTRRSVEATHKQHLESVKKVAKLEAECERLRLLVRKKLPGSAASAKMKSEVEMQGRDQMDMRRRK 304 (1020)
Q Consensus 225 ~~l~kELeiR~~Ere~~~~sae~a~KQhlEsvKKiakLEaECqRLR~lvRKklPgpAala~Mk~Eve~lg~d~~e~rrr~ 304 (1020)
+.+-..|++=..+++.+ ++|.|+.++ .+|-.|+-+.++||.=. ..|..++..+-.+
T Consensus 779 ~~~l~~lQt~~~~~e~s----~~~~k~~~e--~~i~eL~~el~~lk~kl----------q~~~~~~r~l~~~-------- 834 (1822)
T KOG4674|consen 779 QLLLDNLQTQKNELEES----EMATKDKCE--SRIKELERELQKLKKKL----------QEKSSDLRELTNS-------- 834 (1822)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHH--HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhh--------
Confidence 55666666666666654 678888888 78999999999987653 3344443332211
Q ss_pred CCCCcccccccccCCCcchh-hHHHHHHhhHHhHHHHHHHHhhhhhhhhHHHhhhhhhhhhhhHHHHHHH
Q 001727 305 LSPTRDLIVRHATTESSHDI-SLLARLHDMEKENRTLKDIVITKSTELQASRMMFSRTASRLSYVESQLR 373 (1020)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~-~lt~rL~~~EeEnk~LKe~Lakkn~ELQ~sr~m~a~taskLs~le~ql~ 373 (1020)
...+. ++--++..+.-++..++..|+..- .-|+.--.+++.|+..+.
T Consensus 835 ---------------~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~-------~~~~~le~k~~eL~k~l~ 882 (1822)
T KOG4674|consen 835 ---------------LEKQLENAQNLVDELESELKSLLTSLDSVS-------TNIAKLEIKLSELEKRLK 882 (1822)
T ss_pred ---------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 11122 255566666666666666555443 334445556666666665
No 304
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=25.14 E-value=2.3e+02 Score=34.62 Aligned_cols=68 Identities=26% Similarity=0.318 Sum_probs=0.0
Q ss_pred hHHHHHHhhhhhhHhhhhhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhhhhhhhhhHHHHhHHHHHHHHHHHhh
Q 001727 201 AEFSTLMTRLDVTEKENAFLKYEFRILEKELEIRNEEMEYTRRSVEATHKQHLESVKKVAKLEAECERLRLLVR 274 (1020)
Q Consensus 201 ~e~~~l~~rLe~~eKen~sLkyE~~~l~kELeiR~~Ere~~~~sae~a~KQhlEsvKKiakLEaECqRLR~lvR 274 (1020)
+..+.+..+++.+.++|..|+-|-. .+|..|.+.+.|-..+-.--+-|-.+.+..|..|-++|+.++.
T Consensus 66 a~~k~~r~~~~~l~~~N~~l~~eN~------~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~ 133 (472)
T TIGR03752 66 AEVKELRKRLAKLISENEALKAENE------RLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLID 133 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
No 305
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=24.83 E-value=7.9e+02 Score=33.02 Aligned_cols=49 Identities=31% Similarity=0.344 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHH
Q 001727 715 QEENRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKAL 763 (1020)
Q Consensus 715 ~eE~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~ 763 (1020)
..|+..|-+.+..+...++.|.-..+-+..+|++.++.+..+..|-+.|
T Consensus 501 ~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~L 549 (1195)
T KOG4643|consen 501 DLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHL 549 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3567777777888888888888888888888888888887776665543
No 306
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=24.75 E-value=8.7e+02 Score=25.87 Aligned_cols=46 Identities=20% Similarity=0.337 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHH
Q 001727 716 EENRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVK 761 (1020)
Q Consensus 716 eE~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~ 761 (1020)
.-|..++..+..+...+..+.-.-..+..++.+.+..+..++.+..
T Consensus 30 q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~ 75 (221)
T PF04012_consen 30 QAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAE 75 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666666666666666666666554
No 307
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=24.66 E-value=9.1e+02 Score=26.10 Aligned_cols=27 Identities=26% Similarity=0.304 Sum_probs=14.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhhhhc
Q 001727 808 ELEYRNNFCEELEATCLELQLQLESVA 834 (1020)
Q Consensus 808 ELe~e~~~~eEl~AkC~ELqeQLer~~ 834 (1020)
||..=.++++.+...|.+.+.++++..
T Consensus 160 ei~~lks~~~~l~~~~~~~e~~F~~~~ 186 (190)
T PF05266_consen 160 EISRLKSEAEALKEEIENAELEFQSVA 186 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444555555556666666666544
No 308
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=24.64 E-value=8.7e+02 Score=28.16 Aligned_cols=94 Identities=15% Similarity=0.241 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHHHhhh
Q 001727 721 LRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMIEDQMENQKSINEDLDTQLTVAKAKLNEGFQ 800 (1020)
Q Consensus 721 Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~~~Let~L~~~e~E~~el~~ 800 (1020)
|+.-+.++..++++..+.+++..+-..+++.+|+--+.||+.+.+--..+..--.|+.--|+.-+.+|..+=.--=.-++
T Consensus 110 lk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkly~~Y~l~f~ 189 (338)
T KOG3647|consen 110 LKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKLYQRYFLRFH 189 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66667778888888888888888888888899998888888888777777777788888888888877765444444455
Q ss_pred hhhhhHHHHHHhhh
Q 001727 801 KFSSLEVELEYRNN 814 (1020)
Q Consensus 801 Ki~sLE~ELe~e~~ 814 (1020)
-..-|+..+++.-.
T Consensus 190 nl~yL~~qldd~~r 203 (338)
T KOG3647|consen 190 NLDYLKSQLDDRTR 203 (338)
T ss_pred hHHHHHHHHHHHhh
Confidence 56666666666533
No 309
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=24.60 E-value=4.3e+02 Score=33.25 Aligned_cols=95 Identities=25% Similarity=0.341 Sum_probs=0.0
Q ss_pred hhhhcCCCCcccCCCCCCCCCCChhHHHHHhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 001727 98 LDETLKPPLSANENLPYAGAATAPMKCVKQLNFDQAEQEQRVHDAVVKTSGEFEKAQKELEKNLREANERIAKLAAENSH 177 (1020)
Q Consensus 98 Le~~~~~~~~~e~rv~hld~A~~LKeCmrQLr~~rEEqEq~i~eav~~~s~e~ek~k~elE~kl~e~~~~l~~~~aEn~~ 177 (1020)
|++|..++. ++...+||+-.=-.-||-||-.. ||...|..--.|.|..|.+|...|++.+.+
T Consensus 54 ~qdA~~~~~---~~~~p~~~s~~~~s~~r~~~e~~-----RI~~sVs~EL~ele~krqel~seI~~~n~k---------- 115 (907)
T KOG2264|consen 54 LQDALKQNI---ENLDPYDASCSGYSIGRILREQK-----RILASVSLELTELEVKRQELNSEIEEINTK---------- 115 (907)
T ss_pred ccccchhcc---cccCcccccccchhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----------
Q ss_pred hHHHHHHHHHHHHHHHHhhhhHhhHHHHHHhhhhhhHhhhhhhh
Q 001727 178 LSKALLVKEKMIEDLSKRKSQAEAEFSTLMTRLDVTEKENAFLK 221 (1020)
Q Consensus 178 Ls~al~~k~~~i~el~~~k~~ae~e~~~l~~rLe~~eKen~sLk 221 (1020)
|++|+...-++..++..|+.-++.++.....|.
T Consensus 116 -----------iEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~ 148 (907)
T KOG2264|consen 116 -----------IEELKRLIPQKQLELSALKGEIEQAQRQLEELR 148 (907)
T ss_pred -----------HHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHH
No 310
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=24.26 E-value=9.3e+02 Score=29.50 Aligned_cols=103 Identities=17% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHhhhhhhhhHHHHHHHHHHhhhhH-----HHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHhhhhHh
Q 001727 126 KQLNFDQAEQEQRVHDAVVKTSGEF-----EKAQKELEKNLREANERIAKLAAENSHLSKALLVKEKMIEDLSKRKSQAE 200 (1020)
Q Consensus 126 rQLr~~rEEqEq~i~eav~~~s~e~-----ek~k~elE~kl~e~~~~l~~~~aEn~~Ls~al~~k~~~i~el~~~k~~ae 200 (1020)
.||+...+..++++.+++.....++ ..++..++..-.....+|..+...-..|.+++..+...+.. +....+.-
T Consensus 333 ~eL~~~~~~~~~~l~~~l~~~~~e~~~~~~~~i~~~v~~Er~~~~~~l~~~~~~~~~le~~~~~~~~~~~~-~~~~~~l~ 411 (582)
T PF09731_consen 333 QELKRQEEAHEEHLKNELREQAIELQREFEKEIKEKVEQERNGRLAKLAELNSRLKALEEALDARSEAEDE-NRRAQQLW 411 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q ss_pred hHHHHHHhhhhhhHhhh-hhhhhHHHHHHH
Q 001727 201 AEFSTLMTRLDVTEKEN-AFLKYEFRILEK 229 (1020)
Q Consensus 201 ~e~~~l~~rLe~~eKen-~sLkyE~~~l~k 229 (1020)
.-+..|...|.+..... ..|.-||..|.+
T Consensus 412 ~a~~~l~~~l~~~~~~~~~p~~~el~~l~~ 441 (582)
T PF09731_consen 412 LAVDALKSALDSGNAGSPRPFEDELRALKE 441 (582)
T ss_pred HHHHHHHHHHHcCCCcCCCCHHHHHHHHHH
No 311
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=23.80 E-value=1e+03 Score=26.40 Aligned_cols=94 Identities=22% Similarity=0.266 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHH------------HHHHhHHHHHHHhhhhhhhhhh
Q 001727 716 EENRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVK------------ALKESKEMIEDQMENQKSINED 783 (1020)
Q Consensus 716 eE~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~------------~~keS~~l~E~Qle~~~~~~~~ 783 (1020)
..|+.+++++.++...+....-...-+..++.+....+..++..-. .+=.....+|++++.+...+..
T Consensus 31 Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~ 110 (225)
T COG1842 31 QAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQ 110 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666555555555555555555566666666655554432 1112233344444444444444
Q ss_pred HhHHHHHHHHHHHHhhhhhhhhHHHH
Q 001727 784 LDTQLTVAKAKLNEGFQKFSSLEVEL 809 (1020)
Q Consensus 784 Let~L~~~e~E~~el~~Ki~sLE~EL 809 (1020)
+.+....++..+..+..||.-|+...
T Consensus 111 ~~~~~~~l~~~~~~Le~Ki~e~~~~~ 136 (225)
T COG1842 111 AEEQVEKLKKQLAALEQKIAELRAKK 136 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443333
No 312
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=23.17 E-value=5.8e+02 Score=23.62 Aligned_cols=43 Identities=21% Similarity=0.268 Sum_probs=18.3
Q ss_pred hhHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHhh
Q 001727 782 EDLDTQLTVAKAKLNEGFQKFSSLEVELEYRNNFCEELEATCLELQLQLE 831 (1020)
Q Consensus 782 ~~Let~L~~~e~E~~el~~Ki~sLE~ELe~e~~~~eEl~AkC~ELqeQLe 831 (1020)
.+.++-...++..+..+...|..|+.++. .+..+..+++.+|.
T Consensus 58 ~~~~~~~~~L~~~~~~~~~~i~~l~~~~~-------~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 58 QDKEEAIEELEERIEKLEKEIKKLEKQLK-------YLEKKLKELKKKLY 100 (106)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 33444444444444444443443333322 34444555555554
No 313
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=23.05 E-value=5.3e+02 Score=32.02 Aligned_cols=76 Identities=22% Similarity=0.355 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHHHhh
Q 001727 721 LRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMIEDQMENQKSINEDLDTQLTVAKAKLNEGF 799 (1020)
Q Consensus 721 Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~~~Let~L~~~e~E~~el~ 799 (1020)
+..+-+.|-.+|..+....+.+..++.++.+.|.-|+.||.+.+.+ -|.||-.|.+---++..+|..-.-+|+.+.
T Consensus 439 f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~N---YE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 439 FYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRN---YEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455666677777777788888999999999999999986554 788998888666666666666666666553
No 314
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=23.01 E-value=1.3e+03 Score=27.34 Aligned_cols=47 Identities=15% Similarity=0.201 Sum_probs=31.6
Q ss_pred HHHHHHhhHHhHHHHHHHHhhhhhhhhHHHhhhhhhhhhhhHHHHHHHHhhccC
Q 001727 326 LLARLHDMEKENRTLKDIVITKSTELQASRMMFSRTASRLSYVESQLREICTGQ 379 (1020)
Q Consensus 326 lt~rL~~~EeEnk~LKe~Lakkn~ELQ~sr~m~a~taskLs~le~ql~~ls~~q 379 (1020)
||..|.. +|+.+.--.+|++-...-|....--|-++--++++-..+|
T Consensus 188 ~t~~le~-------qk~tv~~Leaev~~~K~~Y~~slrnLE~ISd~IHeeRssq 234 (426)
T KOG2008|consen 188 YTVQLEQ-------QKKTVDDLEAEVTLAKGEYKMSLRNLEMISDEIHEERSSQ 234 (426)
T ss_pred HHHHHHH-------HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhhh
Confidence 6665543 3445555577888888888887777777777777764443
No 315
>PRK02119 hypothetical protein; Provisional
Probab=22.96 E-value=3.7e+02 Score=24.83 Aligned_cols=46 Identities=13% Similarity=0.236 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHH
Q 001727 717 ENRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKA 762 (1020)
Q Consensus 717 E~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~ 762 (1020)
++..+.+-+.+||++++=-.+.++.+-..+-+..+.|..|+.+|..
T Consensus 3 ~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~ 48 (73)
T PRK02119 3 IQQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRY 48 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777788888888777777776666666666666666666654
No 316
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=22.93 E-value=5.3e+02 Score=24.03 Aligned_cols=62 Identities=32% Similarity=0.345 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHhhhhHhhHHHHHHhhhhhhHhhhhhhhhHHHHHHHHHhhhhh
Q 001727 162 REANERIAKLAAENSHLSKALLVKEKMIEDLSKRKSQAEAEFSTLMTRLDVTEKENAFLKYEFRILEKELEIRNE 236 (1020)
Q Consensus 162 ~e~~~~l~~~~aEn~~Ls~al~~k~~~i~el~~~k~~ae~e~~~l~~rLe~~eKen~sLkyE~~~l~kELeiR~~ 236 (1020)
.|....+.++..||.+|---+- -|.+...+ ..-...+.+-|+|..||.|+..+.+||.-+..
T Consensus 3 rEqe~~i~~L~KENF~LKLrI~-------fLee~l~~------~~~~~~~~~~keNieLKve~~~L~~el~~~~~ 64 (75)
T PF07989_consen 3 REQEEQIDKLKKENFNLKLRIY-------FLEERLQK------LGPESIEELLKENIELKVEVESLKRELQEKKK 64 (75)
T ss_pred HHHHHHHHHHHHhhhhHHHHHH-------HHHHHHHh------cccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566777777887643221 11111111 11233467788999999999999999875543
No 317
>PF14282 FlxA: FlxA-like protein
Probab=22.84 E-value=4.9e+02 Score=25.43 Aligned_cols=50 Identities=18% Similarity=0.358 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHhhHHHHHHHHH
Q 001727 715 QEENRRLRDELKSMAARLESATD----RSEALVTQLHESEEQIGNLETEVKALK 764 (1020)
Q Consensus 715 ~eE~e~Lk~ek~~le~~L~~~~~----~~E~~~~ql~E~E~~i~~LqsEL~~~k 764 (1020)
...|+.|+..+..|...|....+ ..+.-+.|.+.+...|..|+.+|..++
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq 71 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQ 71 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777776666 234556666777777777777776543
No 318
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=22.81 E-value=9.4e+02 Score=25.60 Aligned_cols=47 Identities=15% Similarity=0.301 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 001727 719 RRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKE 765 (1020)
Q Consensus 719 e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~ke 765 (1020)
.-|+.-+.+++..|..+...+-..+..-..++..+..+..+......
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~ 72 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEK 72 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666666666665555554333
No 319
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=22.67 E-value=1.2e+03 Score=26.81 Aligned_cols=39 Identities=21% Similarity=0.279 Sum_probs=26.5
Q ss_pred HHhhHHHHHHHHHHhHHHHHHHhhhhh--hhhhhHhHHHHH
Q 001727 752 QIGNLETEVKALKESKEMIEDQMENQK--SINEDLDTQLTV 790 (1020)
Q Consensus 752 ~i~~LqsEL~~~keS~~l~E~Qle~~~--~~~~~Let~L~~ 790 (1020)
.|..|+.||..+.-.+.-+|.||.+.+ .+.+.+..++.+
T Consensus 166 kl~~LeqELvraEae~lvaEAqL~n~kR~~lKEa~~~~f~A 206 (271)
T PF13805_consen 166 KLVVLEQELVRAEAENLVAEAQLSNIKRQKLKEAYSLKFDA 206 (271)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 577788888887777888888888776 333444444443
No 320
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=22.64 E-value=1.7e+02 Score=27.98 Aligned_cols=47 Identities=17% Similarity=0.138 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhhhhHhhHHHHHHhhhhhhHhhhhhhhhHHHHHHH
Q 001727 183 LVKEKMIEDLSKRKSQAEAEFSTLMTRLDVTEKENAFLKYEFRILEK 229 (1020)
Q Consensus 183 ~~k~~~i~el~~~k~~ae~e~~~l~~rLe~~eKen~sLkyE~~~l~k 229 (1020)
..++.++..|.+.+...+.+++.+...++.++++...|+-++.-++|
T Consensus 59 ~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~~ 105 (105)
T cd00632 59 QEKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQK 105 (105)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45677888888888888999999999999999999988888876654
No 321
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=22.53 E-value=4.5e+02 Score=24.20 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=11.4
Q ss_pred HHhhHHHHHHHHHHhHHHHHHHhhh
Q 001727 752 QIGNLETEVKALKESKEMIEDQMEN 776 (1020)
Q Consensus 752 ~i~~LqsEL~~~keS~~l~E~Qle~ 776 (1020)
.+..++.|-..+.+-+..+-.+++.
T Consensus 29 q~~~~~~ER~~L~ekne~Ar~rvEa 53 (65)
T TIGR02449 29 QEKTWREERAQLLEKNEQARQKVEA 53 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444
No 322
>PRK00106 hypothetical protein; Provisional
Probab=22.46 E-value=1.3e+03 Score=28.86 Aligned_cols=25 Identities=16% Similarity=0.372 Sum_probs=13.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHH
Q 001727 139 VHDAVVKTSGEFEKAQKELEKNLRE 163 (1020)
Q Consensus 139 i~eav~~~s~e~ek~k~elE~kl~e 163 (1020)
+.++....-.++...+.+++..+.+
T Consensus 70 ~ke~~lEaeeEi~~~R~ElEkel~e 94 (535)
T PRK00106 70 KKELLLEAKEEARKYREEIEQEFKS 94 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444446666666666655433
No 323
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=22.43 E-value=1.2e+02 Score=25.75 Aligned_cols=32 Identities=31% Similarity=0.465 Sum_probs=0.0
Q ss_pred hHHHHHHhhhhhhHhhhhhhhhHHHHHHHHHh
Q 001727 201 AEFSTLMTRLDVTEKENAFLKYEFRILEKELE 232 (1020)
Q Consensus 201 ~e~~~l~~rLe~~eKen~sLkyE~~~l~kELe 232 (1020)
+.+..|...-+++.+||..|+-||..+...|.
T Consensus 12 ~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 12 ASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 324
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=22.31 E-value=6.3e+02 Score=23.38 Aligned_cols=41 Identities=34% Similarity=0.374 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhhhhHhhHHHHHHhhhhhhHhhhhhhhhHH
Q 001727 184 VKEKMIEDLSKRKSQAEAEFSTLMTRLDVTEKENAFLKYEF 224 (1020)
Q Consensus 184 ~k~~~i~el~~~k~~ae~e~~~l~~rLe~~eKen~sLkyE~ 224 (1020)
.++.++..|.+.....+.+++.|...+..++++...++-.+
T Consensus 59 ~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 59 DKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKL 99 (106)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666555555443
No 325
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=22.30 E-value=6.6e+02 Score=27.58 Aligned_cols=86 Identities=19% Similarity=0.333 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHhhhhHhhHHHHHHhhhhhhHhhhhhhhhHHHHHHH-
Q 001727 151 EKAQKELEKNLREANERIAKLAAENSHLSKALLVKEKMIEDLSKRKSQAEAEFSTLMTRLDVTEKENAFLKYEFRILEK- 229 (1020)
Q Consensus 151 ek~k~elE~kl~e~~~~l~~~~aEn~~Ls~al~~k~~~i~el~~~k~~ae~e~~~l~~rLe~~eKen~sLkyE~~~l~k- 229 (1020)
.....+|+.+|+..+++.++++.- |.....-+-..|..-+.|...|.++.|+.-+||.|+--.+.
T Consensus 80 ks~~qeLe~~L~~~~qk~~tl~e~--------------~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~ 145 (203)
T KOG3433|consen 80 KSVLQELESQLATGSQKKATLGES--------------IENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQET 145 (203)
T ss_pred HHHHHHHHHHHHHhhhhHhHHHHH--------------HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q ss_pred HHhhhhhhhhhhhhhHHHhhh
Q 001727 230 ELEIRNEEMEYTRRSVEATHK 250 (1020)
Q Consensus 230 ELeiR~~Ere~~~~sae~a~K 250 (1020)
.=+|+-.=+.....+||+|++
T Consensus 146 dpqv~~k~~~~~K~~~eaanr 166 (203)
T KOG3433|consen 146 DPQVFEKKVHLEKTMAEAANR 166 (203)
T ss_pred CHHHHHHHHHHHHHHHHHHhh
No 326
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=22.11 E-value=1.1e+03 Score=26.05 Aligned_cols=108 Identities=20% Similarity=0.273 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHH-------HHhhhhhhhhhhHhHHHHHHHHHHHH
Q 001727 725 LKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMIE-------DQMENQKSINEDLDTQLTVAKAKLNE 797 (1020)
Q Consensus 725 k~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E-------~Qle~~~~~~~~Let~L~~~e~E~~e 797 (1020)
.+++...|..-.......+.++...+..+.+|..++..+++.-..+- .-.+.+..-..+|.+....+...+.+
T Consensus 26 ~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~ 105 (264)
T PF06008_consen 26 IEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQE 105 (264)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444555555555555555555544443333222 22222222224444444444444555
Q ss_pred hhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHhhhhc
Q 001727 798 GFQKFSSLEVELEYRNNFCEELEATCLELQLQLESVA 834 (1020)
Q Consensus 798 l~~Ki~sLE~ELe~e~~~~eEl~AkC~ELqeQLer~~ 834 (1020)
+..++..|-. ........++.....+-+.=|+-+.
T Consensus 106 l~~~~~~l~~--~~~~~~~~~l~~~l~ea~~mL~emr 140 (264)
T PF06008_consen 106 LIEQVESLNE--NGDQLPSEDLQRALAEAQRMLEEMR 140 (264)
T ss_pred HHHHHHHhCc--ccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5544444433 2223344444444444444444443
No 327
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=22.04 E-value=9.8e+02 Score=30.19 Aligned_cols=49 Identities=24% Similarity=0.275 Sum_probs=32.8
Q ss_pred HHHHHhhhhhhhhhhhhhHHHhhhhhhhhhHHHHhHHHHHHHHHHHhhh
Q 001727 227 LEKELEIRNEEMEYTRRSVEATHKQHLESVKKVAKLEAECERLRLLVRK 275 (1020)
Q Consensus 227 l~kELeiR~~Ere~~~~sae~a~KQhlEsvKKiakLEaECqRLR~lvRK 275 (1020)
|.+||+-=-.=-+++....++-..--+.+-..|.++|+=+..|..-+..
T Consensus 87 L~~eL~~Ll~~l~i~~~~l~~L~~~~l~~~~~l~~~e~a~~~L~~Al~~ 135 (701)
T PF09763_consen 87 LLNELENLLDTLSIPEEHLEALRNASLSSPDGLEKIEEAAEALYKALKA 135 (701)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHh
Confidence 4444444444445566666666666677777889999999999865555
No 328
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=21.68 E-value=4.7e+02 Score=33.93 Aligned_cols=45 Identities=24% Similarity=0.311 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHHHHHH---HHHHHHhhhHHhHHHHHHHHHHHHHHH
Q 001727 149 EFEKAQKELEKNLREANE---RIAKLAAENSHLSKALLVKEKMIEDLS 193 (1020)
Q Consensus 149 e~ek~k~elE~kl~e~~~---~l~~~~aEn~~Ls~al~~k~~~i~el~ 193 (1020)
|..++|.|++.-|++++. +|..+..||..|.-+|+-|+.=|..|+
T Consensus 495 e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~ 542 (861)
T PF15254_consen 495 ETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLR 542 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHH
Confidence 336778888877777765 788888899888888887766665443
No 329
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=21.66 E-value=1.1e+03 Score=25.96 Aligned_cols=41 Identities=10% Similarity=0.160 Sum_probs=26.2
Q ss_pred hhhhhHHHHHHHHHhhcCcchHHHHHHHHHHHhhhccCcch
Q 001727 47 RSMKNLNEQLASVIFDCHPKDELMAKQAKLVQEAGAGQEKP 87 (1020)
Q Consensus 47 ~~~k~LnekLs~al~~~~~Kd~lvkqhaKvaeEAv~GwEKa 87 (1020)
.....|..|...-......-..+|...-+++-..+..|++.
T Consensus 23 ~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~ 63 (207)
T PF05010_consen 23 EEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQ 63 (207)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555666666555555555667777777777777777554
No 330
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=21.62 E-value=6.4e+02 Score=27.00 Aligned_cols=20 Identities=25% Similarity=0.479 Sum_probs=9.8
Q ss_pred HHHHHHHHHHhhHHHHHHHH
Q 001727 744 TQLHESEEQIGNLETEVKAL 763 (1020)
Q Consensus 744 ~ql~E~E~~i~~LqsEL~~~ 763 (1020)
.++...+..|.+++.++..+
T Consensus 76 ~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 76 KEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555544
No 331
>PRK09343 prefoldin subunit beta; Provisional
Probab=21.55 E-value=8.1e+02 Score=24.40 Aligned_cols=106 Identities=12% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHH---HHHHHHhHHHHHHHhhhhhhhhhhHhHHHHHH
Q 001727 715 QEENRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETE---VKALKESKEMIEDQMENQKSINEDLDTQLTVA 791 (1020)
Q Consensus 715 ~eE~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsE---L~~~keS~~l~E~Qle~~~~~~~~Let~L~~~ 791 (1020)
+.++..+=.+...+...++....+...+..++.|.+..+.+|..= -...+--..++=.+ ...++...|+.++...
T Consensus 6 ~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~q--d~~e~~~~l~~r~E~i 83 (121)
T PRK09343 6 PPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKV--DKTKVEKELKERKELL 83 (121)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhc--cHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhhhhhhhHHHHHHhhhhhHHHHHH
Q 001727 792 KAKLNEGFQKFSSLEVELEYRNNFCEELEAT 822 (1020)
Q Consensus 792 e~E~~el~~Ki~sLE~ELe~e~~~~eEl~Ak 822 (1020)
+.++..+..+...|+..+.+-...-.++...
T Consensus 84 e~~ik~lekq~~~l~~~l~e~q~~l~~ll~~ 114 (121)
T PRK09343 84 ELRSRTLEKQEKKLREKLKELQAKINEMLSK 114 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 332
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=21.29 E-value=4.7e+02 Score=28.67 Aligned_cols=85 Identities=20% Similarity=0.259 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHH--------HHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhhhhHhHH
Q 001727 716 EENRRLRDELKSMAARLESATDRSEAL--------VTQLHESEEQIGNLETEVKALKESKEMIEDQMENQKSINEDLDTQ 787 (1020)
Q Consensus 716 eE~e~Lk~ek~~le~~L~~~~~~~E~~--------~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~~~Let~ 787 (1020)
=|...|+-|+.+|+..|.++....+.. ..=-.|.|+.|.=-+.+|..+++ -...-..-
T Consensus 96 wEevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~--------------~~~~~~~~ 161 (195)
T PF12761_consen 96 WEEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEE--------------GRSKSGKN 161 (195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhc--------------cCCCCCCC
Confidence 366679999999999998888877651 11112445555444444443322 11122234
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHhhh
Q 001727 788 LTVAKAKLNEGFQKFSSLEVELEYRNN 814 (1020)
Q Consensus 788 L~~~e~E~~el~~Ki~sLE~ELe~e~~ 814 (1020)
|..+..+++.+.++|..||.=|..++.
T Consensus 162 l~~v~~Dl~~ie~QV~~Le~~L~~k~~ 188 (195)
T PF12761_consen 162 LKSVREDLDTIEEQVDGLESHLSSKKQ 188 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888888888888876654
No 333
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=21.23 E-value=5.5e+02 Score=23.89 Aligned_cols=45 Identities=16% Similarity=0.302 Sum_probs=31.6
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHH
Q 001727 139 VHDAVVKTSGEFEKAQKELEKNLREANERIAKLAAENSHLSKALL 183 (1020)
Q Consensus 139 i~eav~~~s~e~ek~k~elE~kl~e~~~~l~~~~aEn~~Ls~al~ 183 (1020)
++....+.-++|++.-..|...+.....+.+.+.+-++.|++-+.
T Consensus 15 Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~ 59 (70)
T PF04899_consen 15 LQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQ 59 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 455666777788888777777777777777766666666665553
No 334
>PRK11281 hypothetical protein; Provisional
Probab=21.15 E-value=9.1e+02 Score=32.74 Aligned_cols=59 Identities=12% Similarity=0.191 Sum_probs=27.2
Q ss_pred HHHHHHHHHhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhh
Q 001727 757 ETEVKALKESKEMIEDQMENQKSINEDLDTQLTVAKAKLNEGFQKFSSLEVELEYRNNF 815 (1020)
Q Consensus 757 qsEL~~~keS~~l~E~Qle~~~~~~~~Let~L~~~e~E~~el~~Ki~sLE~ELe~e~~~ 815 (1020)
++|+..++-.+......+.+......=+-.+...+..++..+.+.+..|...+..+|..
T Consensus 198 ~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~kr~~ 256 (1113)
T PRK11281 198 QAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKRLT 256 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444333333344444444555555555555555555555444
No 335
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=21.15 E-value=2.1e+02 Score=28.25 Aligned_cols=35 Identities=34% Similarity=0.321 Sum_probs=27.4
Q ss_pred hHhhHHHHHHhhhhhhHhhhhhhhhHHHHHHHHHh
Q 001727 198 QAEAEFSTLMTRLDVTEKENAFLKYEFRILEKELE 232 (1020)
Q Consensus 198 ~ae~e~~~l~~rLe~~eKen~sLkyE~~~l~kELe 232 (1020)
+.-+++..|+..+..+..||+.|+.|-+-|.+-|.
T Consensus 19 ~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~ 53 (107)
T PF06156_consen 19 QLLEELEELKKQLQELLEENARLRIENEHLRERLE 53 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456677888889999999999999887776554
No 336
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=21.13 E-value=9.6e+02 Score=28.88 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=9.8
Q ss_pred HHHHHHhhhhhhhhHHHHHH
Q 001727 792 KAKLNEGFQKFSSLEVELEY 811 (1020)
Q Consensus 792 e~E~~el~~Ki~sLE~ELe~ 811 (1020)
..|+-.+.+.+.+.|+-+++
T Consensus 275 q~Ei~~LKqeLa~~EEK~~Y 294 (395)
T PF10267_consen 275 QNEIYNLKQELASMEEKMAY 294 (395)
T ss_pred HHHHHHHHHHHHhHHHHHHH
Confidence 44555555555544443333
No 337
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=21.06 E-value=7.7e+02 Score=23.91 Aligned_cols=89 Identities=17% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHH---------------HHHHHHhHHHHHHHhhhhhhhh
Q 001727 717 ENRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETE---------------VKALKESKEMIEDQMENQKSIN 781 (1020)
Q Consensus 717 E~e~Lk~ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsE---------------L~~~keS~~l~E~Qle~~~~~~ 781 (1020)
++..+-.+...+...++....++..+..++.|.+..+.+|..= .....+-..-+++.++......
T Consensus 4 ~~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i 83 (110)
T TIGR02338 4 QVQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRV 83 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHhHHHHHHHHHHHHhhhhhhhh
Q 001727 782 EDLDTQLTVAKAKLNEGFQKFSSL 805 (1020)
Q Consensus 782 ~~Let~L~~~e~E~~el~~Ki~sL 805 (1020)
..|+.++..++..+.++..++..+
T Consensus 84 ~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 84 KTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 338
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=20.87 E-value=1.2e+03 Score=26.30 Aligned_cols=54 Identities=9% Similarity=0.136 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhh
Q 001727 724 ELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMIEDQMENQ 777 (1020)
Q Consensus 724 ek~~le~~L~~~~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~ 777 (1020)
.+..++..+..+..+++....++...+..+..++.++..++..-..+..+++-.
T Consensus 87 ~l~~a~a~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~a~~~l~~a~~~~~R~ 140 (346)
T PRK10476 87 TVAQAQADLALADAQIMTTQRSVDAERSNAASANEQVERARANAKLATRTLERL 140 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445444444444444333333344444444444444333444443333
No 339
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=20.61 E-value=2.8e+02 Score=24.84 Aligned_cols=33 Identities=27% Similarity=0.376 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHH
Q 001727 155 KELEKNLREANERIAKLAAENSHLSKALLVKEK 187 (1020)
Q Consensus 155 ~elE~kl~e~~~~l~~~~aEn~~Ls~al~~k~~ 187 (1020)
.+||.++..++-.+..++.||..|+.++..=+.
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~e 35 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIEE 35 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999988887764333
No 340
>PF13166 AAA_13: AAA domain
Probab=20.60 E-value=1.2e+03 Score=28.89 Aligned_cols=9 Identities=56% Similarity=0.700 Sum_probs=4.3
Q ss_pred CCCCCCccc
Q 001727 942 DGPKPSLLH 950 (1020)
Q Consensus 942 ~~~~p~~~~ 950 (1020)
|+|=++||+
T Consensus 534 DDPISSLD~ 542 (712)
T PF13166_consen 534 DDPISSLDH 542 (712)
T ss_pred CCCCCCCCH
Confidence 455555443
No 341
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.59 E-value=1.8e+03 Score=28.05 Aligned_cols=18 Identities=28% Similarity=0.397 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001727 715 QEENRRLRDELKSMAARL 732 (1020)
Q Consensus 715 ~eE~e~Lk~ek~~le~~L 732 (1020)
.|||+..+-+.++|..++
T Consensus 330 ~EeIe~~~ke~kdLkEkv 347 (654)
T KOG4809|consen 330 LEEIESFRKENKDLKEKV 347 (654)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355555555555544444
No 342
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=20.57 E-value=9e+02 Score=24.51 Aligned_cols=50 Identities=10% Similarity=0.114 Sum_probs=34.0
Q ss_pred HHHhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHh
Q 001727 125 VKQLNFDQAEQEQRVHDAVVKTSGEFEKAQKELEKNLREANERIAKLAAENSHL 178 (1020)
Q Consensus 125 mrQLr~~rEEqEq~i~eav~~~s~e~ek~k~elE~kl~e~~~~l~~~~aEn~~L 178 (1020)
.+.++.+-++++++|.+.+.... ..+.+++....+....|..++.|...+
T Consensus 29 ~kPi~~~l~~R~~~I~~~l~~A~----~~~~ea~~~~~e~e~~l~~Ar~eA~~~ 78 (141)
T PRK08476 29 YKPLLKFMDNRNASIKNDLEKVK----TNSSDVSEIEHEIETILKNAREEANKI 78 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888999999988876543 344556666666666666666665543
No 343
>smart00338 BRLZ basic region leucin zipper.
Probab=20.53 E-value=2.1e+02 Score=25.08 Aligned_cols=40 Identities=33% Similarity=0.453 Sum_probs=0.0
Q ss_pred HHhhhhHhhHHHHHHhhhhhhHhhhhhhhhHHHHHHHHHh
Q 001727 193 SKRKSQAEAEFSTLMTRLDVTEKENAFLKYEFRILEKELE 232 (1020)
Q Consensus 193 ~~~k~~ae~e~~~l~~rLe~~eKen~sLkyE~~~l~kELe 232 (1020)
..++..-...+..|..+++.++.+|..|+.++..+..|+.
T Consensus 18 ~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~ 57 (65)
T smart00338 18 RRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELE 57 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 344
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=20.38 E-value=2.1e+03 Score=28.87 Aligned_cols=47 Identities=19% Similarity=0.268 Sum_probs=24.8
Q ss_pred CCcccCCCCCCCCC-------CChhHHHHHhhhhhhhh--HHHH-HHHHHHhhhhHH
Q 001727 105 PLSANENLPYAGAA-------TAPMKCVKQLNFDQAEQ--EQRV-HDAVVKTSGEFE 151 (1020)
Q Consensus 105 ~~~~e~rv~hld~A-------~~LKeCmrQLr~~rEEq--Eq~i-~eav~~~s~e~e 151 (1020)
..+.++||.-|+.- -++-=|++++|..+|.+ ++|+ -+..-.-|+|..
T Consensus 643 ~~af~~~v~~l~~~~e~~~~~ls~~~~~~r~~~~~e~~~Ee~r~~le~~~~~t~El~ 699 (984)
T COG4717 643 QAAFEERVEGLLAVLEAQFIDLSTLFCVQRLRVAAELQKEEARLALEGNIERTKELN 699 (984)
T ss_pred HHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHH
Confidence 34455555554432 11445888888888775 3444 333333344443
No 345
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=20.28 E-value=2e+03 Score=28.39 Aligned_cols=235 Identities=21% Similarity=0.234 Sum_probs=120.3
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHhhhhHhhHHHHHHhh--------
Q 001727 138 RVHDAVVKTSGEFEKAQKELEKNLREANERIAKLAAENSHLSKALLVKEKMIEDLSKRKSQAEAEFSTLMTR-------- 209 (1020)
Q Consensus 138 ~i~eav~~~s~e~ek~k~elE~kl~e~~~~l~~~~aEn~~Ls~al~~k~~~i~el~~~k~~ae~e~~~l~~r-------- 209 (1020)
.+++...+-..=..++ .+||..|.-+...+....+||..|....++=.+-...+.-++.+...+++.++.|
T Consensus 21 Ll~esa~~E~~~~~~i-~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dy 99 (717)
T PF09730_consen 21 LLQESASKEAYLQQRI-LELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDY 99 (717)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4555555544444455 4788888888888888888888887766543333333333444444444333222
Q ss_pred ------hhhhHhhh----------hhhhhHHHHHHHHHhhhhhhhhhhhhhHHHhhhhhhhhhHHHHhHHHHHHHHHHHh
Q 001727 210 ------LDVTEKEN----------AFLKYEFRILEKELEIRNEEMEYTRRSVEATHKQHLESVKKVAKLEAECERLRLLV 273 (1020)
Q Consensus 210 ------Le~~eKen----------~sLkyE~~~l~kELeiR~~Ere~~~~sae~a~KQhlEsvKKiakLEaECqRLR~lv 273 (1020)
-=+++|.+ -+||+|+..+.+|.++-|-=.+--.+==+.|-||==|..- -|..| |--+.-+
T Consensus 100 selEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALe---sl~~E-Reqk~~L 175 (717)
T PF09730_consen 100 SELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALE---SLKSE-REQKNAL 175 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH-HHHHHHH
Confidence 22333333 3556788888888888776555555555555555322221 11111 2233444
Q ss_pred hhcC------CCchHHHhhHHHHHhhcc------------c-----------------hhhhhcccCCCCccccccc---
Q 001727 274 RKKL------PGSAASAKMKSEVEMQGR------------D-----------------QMDMRRRKLSPTRDLIVRH--- 315 (1020)
Q Consensus 274 RKkl------PgpAala~Mk~Eve~lg~------------d-----------------~~e~rrr~~~~~~~~~~~~--- 315 (1020)
||-| +.+.-+..+-..++.+.. | .+++|..-+..+....+.+
T Consensus 176 rkEL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lv 255 (717)
T PF09730_consen 176 RKELDQHLNIESISYLSNLAISLDGLKFSEDPRAATEPNNDDEEENGGLNGGPGLAKGNGDNRMSTPRKSESFSPAPSLV 255 (717)
T ss_pred HHHHHHhcCccccccccchhhcccccccccccccccCCCCchhhhcchhhccchhcccccccccCCCCCCCCCCCCCccc
Confidence 5532 222222233333333200 0 0000100000000000000
Q ss_pred ---ccCCCcchhh-HHHHHHhhHHhHHHHHHHHhhhhhhhhHHHhhhhhhhhhhhHHHHHHHHhhc
Q 001727 316 ---ATTESSHDIS-LLARLHDMEKENRTLKDIVITKSTELQASRMMFSRTASRLSYVESQLREICT 377 (1020)
Q Consensus 316 ---~~~~~~~~~~-lt~rL~~~EeEnk~LKe~Lakkn~ELQ~sr~m~a~taskLs~le~ql~~ls~ 377 (1020)
.+==+.+++. |-.+|.-||-|.-.|-..|-.-...|..++.-++.--.|+..|-.++.-+..
T Consensus 256 ~DLfSEl~~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~ 321 (717)
T PF09730_consen 256 SDLFSELNLSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRK 321 (717)
T ss_pred chhhhhcchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0000122255 8889999999999997777766666666666666666666666666665543
No 346
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=20.12 E-value=1.4e+03 Score=26.61 Aligned_cols=67 Identities=28% Similarity=0.425 Sum_probs=39.9
Q ss_pred HHHHHhhhhHhhHHHHHHhhhhhhHhhhhhhhhHHHHHHHHHh-hhhhhhhhhhhhHHHhhhhhhhhh
Q 001727 190 EDLSKRKSQAEAEFSTLMTRLDVTEKENAFLKYEFRILEKELE-IRNEEMEYTRRSVEATHKQHLESV 256 (1020)
Q Consensus 190 ~el~~~k~~ae~e~~~l~~rLe~~eKen~sLkyE~~~l~kELe-iR~~Ere~~~~sae~a~KQhlEsv 256 (1020)
.++++.....-.+|-.+..+.+.+..+.-.++-+++-+.+.|- +|..++..-+++.+---+|-.+.+
T Consensus 203 De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~~~~~~~~~~~ee~kera~ei 270 (294)
T COG1340 203 DELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKAAKRREKREELKERAEEI 270 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555666666777777777777777777777664 666666666655554444433333
No 347
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=20.11 E-value=7.4e+02 Score=25.83 Aligned_cols=73 Identities=26% Similarity=0.292 Sum_probs=33.8
Q ss_pred hhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhh
Q 001727 736 TDRSEALVTQLHESEEQIGNLETEVKALKESKEMIEDQMENQKSINEDLDTQLTVAKAKLNEGFQKFSSLEVELEYRNNF 815 (1020)
Q Consensus 736 ~~~~E~~~~ql~E~E~~i~~LqsEL~~~keS~~l~E~Qle~~~~~~~~Let~L~~~e~E~~el~~Ki~sLE~ELe~e~~~ 815 (1020)
.++...++.||.+..++|..|+.. ...+.-+..+++....-|. +.....++++..+. +-..|+..|..-.+.
T Consensus 26 ~~e~~~~k~ql~~~d~~i~~Lk~~----~~d~eeLk~~i~~lq~~~~---~~~~~~e~~l~~~~-~~~ai~~al~~akak 97 (155)
T PF06810_consen 26 KEERDNLKTQLKEADKQIKDLKKS----AKDNEELKKQIEELQAKNK---TAKEEYEAKLAQMK-KDSAIKSALKGAKAK 97 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-HHHHHHHHHHHcCCC
Confidence 344455566666666666665552 1234444455555443333 22223334444432 234455555554443
Q ss_pred h
Q 001727 816 C 816 (1020)
Q Consensus 816 ~ 816 (1020)
.
T Consensus 98 n 98 (155)
T PF06810_consen 98 N 98 (155)
T ss_pred C
Confidence 3
Done!