Query 001727
Match_columns 1020
No_of_seqs 110 out of 112
Neff 3.8
Searched_HMMs 29240
Date Tue Mar 26 16:55:46 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001727.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1023-1026//hhsearch_pdb/001727hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 1.0 1 1 43.6 9.8 49 715-763 856-904 (1184)
2 1go4_E MAD1 (mitotic arrest de 1.0 1 1 38.7 7.1 74 202-278 13-96 (100)
3 1i84_S Smooth muscle myosin he 1.0 1 1 38.1 11.0 50 715-764 863-912 (1184)
4 2dfs_A Myosin-5A; myosin-V, in 1.0 1 1 29.7 10.8 35 792-826 976-1010(1080)
5 2b9c_A Striated-muscle alpha t 1.0 1 1 27.9 9.1 127 731-878 18-146 (147)
6 3vkg_A Dynein heavy chain, cyt 1.0 1 1 26.8 18.7 15 866-880 2089-2103(3245)
7 3vkg_A Dynein heavy chain, cyt 1.0 1 1 26.4 11.8 61 156-216 2039-2106(3245)
8 3tnu_B Keratin, type II cytosk 1.0 1 1 26.0 9.8 84 730-823 22-105 (129)
9 3u1c_A Tropomyosin alpha-1 cha 1.0 1 1 25.9 12.1 84 717-807 10-100 (101)
10 3tnu_A Keratin, type I cytoske 1.0 1 1 25.8 8.8 81 730-820 24-104 (131)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=1.00 E-value=1 Score=43.59 Aligned_cols=49 Identities=20% Similarity=0.209 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8989988999999999988776556998987899999885189999999
Q 001727 715 QEENRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKAL 763 (1020)
Q Consensus 715 ~eE~~~Lk~e~~~le~~L~~~~~~~E~~~~Ql~E~E~~i~~LqsEL~~~ 763 (1020)
..+++.++.++..+...+....+....+..++...++.+..++.++...
T Consensus 856 ~~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e 904 (1184)
T 1i84_S 856 EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAE 904 (1184)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999999999999999999999999999
No 2
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=1.00 E-value=1 Score=38.69 Aligned_cols=74 Identities=32% Similarity=0.433 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 799999665556754321236899877777565554322132----------4987545555666779957999899999
Q 001727 202 EFSTLMTRLDVTEKENAFLKYEFRILEKELEIRNEEMEYTRR----------SVEATHKQHLESVKKVAKLEAECERLRL 271 (1020)
Q Consensus 202 e~~~l~~rLe~~eKen~sLkyE~~~l~kELeiR~~Ere~~~~----------sae~a~KQhlEsvKKiakLEaECqRLr~ 271 (1020)
++..|..++++.++||..|+-+.-.|.-+|+-|+---+|+.. -|..|..|+ + +.|.+|.+||.|||.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~-~--~~~e~Lq~E~erLr~ 89 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRL-R--EDHSQLQAECERLRG 89 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHH-H--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHH-H--HHHHHHHHHHHHHHH
T ss_conf 8999999999999999999999999999998876326568766705553688678999999-9--999999999999999
Q ss_pred HHHHCCC
Q ss_conf 8651099
Q 001727 272 LVRKKLP 278 (1020)
Q Consensus 272 lvRKklP 278 (1020)
.+|+---
T Consensus 90 ~v~~lEe 96 (100)
T 1go4_E 90 LLRAMER 96 (100)
T ss_dssp HHTTCC-
T ss_pred HHHHHHC
T ss_conf 9999865
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=1.00 E-value=1 Score=38.06 Aligned_cols=50 Identities=14% Similarity=0.175 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89899889999999999887765569989878999998851899999998
Q 001727 715 QEENRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALK 764 (1020)
Q Consensus 715 ~eE~~~Lk~e~~~le~~L~~~~~~~E~~~~Ql~E~E~~i~~LqsEL~~~k 764 (1020)
.++++.++.++..++..+......++.+..+..+.+..+...+.++..+.
T Consensus 863 ~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e 912 (1184)
T 1i84_S 863 DEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAE 912 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999999999
No 4
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=1.00 E-value=1 Score=29.72 Aligned_cols=35 Identities=9% Similarity=0.071 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998764422235899888663208889999999
Q 001727 792 KAKLNEGFQKFSSLEVELEYRNNFCEELEATCLEL 826 (1020)
Q Consensus 792 e~E~~el~~Ki~sLE~Ele~Er~~~eEl~akC~eL 826 (1020)
+.|...+..++..|+.|+++.+...+.+..-..+|
T Consensus 976 ~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~l 1010 (1080)
T 2dfs_A 976 EEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTI 1010 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999
No 5
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=1.00 E-value=1 Score=27.90 Aligned_cols=127 Identities=26% Similarity=0.276 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98877655699898789999988518999999988579899875544443342767799999999876442223589988
Q 001727 731 RLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMIEDQMENQKSINEDLDTQLTVAKAKLNEGFQKFSSLEVELE 810 (1020)
Q Consensus 731 ~L~~~~~~~E~~~~Ql~E~E~~i~~LqsEL~~~keS~~l~E~qlk~~~~~~~~Let~L~~~e~E~~el~~Ki~sLE~Ele 810 (1020)
+|+.++..++....-..|++.....|...-....+.-..+|.||+-.+.+-. .+.....+..+|+.-+|.+|+
T Consensus 18 rl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~ae-------eadrKyeE~~RKl~~~E~dLe 90 (147)
T 2b9c_A 18 RLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE-------DADRKYEEVARKLVIIESDLE 90 (147)
T ss_dssp TTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999888778889998876411438999999999999999999-------988768999989999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 86632088899999999986210268999888894431110235699--975347887999999999874
Q 001727 811 YRNNFCEELEATCLELQLQLESVAKREPPSYGVNQGEKQSQNGWEMT--AASIKLAECQETILNLGKQLK 878 (1020)
Q Consensus 811 ~Er~~~eEl~akC~eLeeqLEr~~~~~~~~~~~~~ed~q~kqe~EIa--AAAeKLAECQETIlnLGKQLK 878 (1020)
.--...+.+.++|.+|+++|.-+.+ .++. .|++ -|+.|=..-.++|-.|..|||
T Consensus 91 raeeRae~aE~k~~eLEeeL~~~~~-------------nlKs-LE~~eekas~rE~~yee~I~~L~~kLk 146 (147)
T 2b9c_A 91 RAEERAELSEGKCAELEEELKTVTN-------------NLKS-LEDKVEELLSKNYHLENEVARLKKLVG 146 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHH-HHHTTTTHHHHHHHHHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 8899999889989879999998878-------------7776-687688888889999999999998754
No 6
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=1.00 E-value=1 Score=26.79 Aligned_cols=15 Identities=13% Similarity=0.270 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHC
Q ss_conf 799999999987430
Q 001727 866 CQETILNLGKQLKAL 880 (1020)
Q Consensus 866 CQETIlnLGKQLKAL 880 (1020)
.++++..|..|++.|
T Consensus 2089 W~~~~~~l~~~~~~L 2103 (3245)
T 3vkg_A 2089 WEQQSENFNTQMSTV 2103 (3245)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 999999999999725
No 7
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=1.00 E-value=1 Score=26.36 Aligned_cols=61 Identities=16% Similarity=0.284 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999-------99744577679899898989998876666766799999665556754
Q 001727 156 ELEKNLREANERIA-------KLAAENSHLSKALLVKEKMIEDLSKRKSQAEAEFSTLMTRLDVTEKE 216 (1020)
Q Consensus 156 elE~kl~e~~~~l~-------~~~aEn~~Ls~al~~k~~~i~el~~~k~~ae~e~~~l~~rLe~~eKe 216 (1020)
++|.+|..+..++. .+..+......-|..-+++|..|..++.+=......+..++..+--+
T Consensus 2039 ~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~GD 2106 (3245)
T 3vkg_A 2039 ALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVGD 2106 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHH
T ss_conf 99999999999999999999999999999999999999999862113132999999999999725289
No 8
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=25.99 Aligned_cols=84 Identities=14% Similarity=0.181 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99887765569989878999998851899999998857989987554444334276779999999987644222358998
Q 001727 730 ARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMIEDQMENQKSINEDLDTQLTVAKAKLNEGFQKFSSLEVEL 809 (1020)
Q Consensus 730 ~~L~~~~~~~E~~~~Ql~E~E~~i~~LqsEL~~~keS~~l~E~qlk~~~~~~~~Let~L~~~e~E~~el~~Ki~sLE~El 809 (1020)
....+..+.+...+..+.|.-..|.+|+.+|.+++.-+..+|.+|.....-| ..++.....+|..||.+|
T Consensus 22 ~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~----------~~~l~~~q~~i~~lE~eL 91 (129)
T 3tnu_B 22 QTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRG----------ELALKDARNKLAELEEAL 91 (129)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
T ss_conf 9998638889987888999999899999999988747999987999999878----------999999999999878769
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 88663208889999
Q 001727 810 EYRNNFCEELEATC 823 (1020)
Q Consensus 810 e~Er~~~eEl~akC 823 (1020)
..=+.-.+-..--|
T Consensus 92 ~~~r~e~~~ql~EY 105 (129)
T 3tnu_B 92 QKAKQDMARLLREY 105 (129)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999988999
No 9
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=1.00 E-value=1 Score=25.89 Aligned_cols=84 Identities=14% Similarity=0.151 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Q ss_conf 89988999999999988776556998987899999885189999999885798998755-------44443342767799
Q 001727 717 ENRRLRDELKSMAARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMIEDQME-------NQKSINEDLDTQLT 789 (1020)
Q Consensus 717 E~~~Lk~e~~~le~~L~~~~~~~E~~~~Ql~E~E~~i~~LqsEL~~~keS~~l~E~qlk-------~~~~~~~~Let~L~ 789 (1020)
.+..|+.++++...+. +....++.+.+.....+..++.+++.-++.+|..+. .-....+.-+..++
T Consensus 10 Km~~lk~e~e~a~dra-------e~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~ 82 (101)
T 3u1c_A 10 KMQMLKLDKENALDRA-------EQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAA 82 (101)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999898898899-------999999999999999867899999988998898999999999999999999988787
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999999876442223589
Q 001727 790 VAKAKLNEGFQKFSSLEV 807 (1020)
Q Consensus 790 ~~e~E~~el~~Ki~sLE~ 807 (1020)
.+|.++..+.++|-.||+
T Consensus 83 ~aE~ev~~L~RriqllEE 100 (101)
T 3u1c_A 83 KAESEVASLNRRIQLVEE 100 (101)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCC
T ss_conf 778999999999999814
No 10
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=25.80 Aligned_cols=81 Identities=17% Similarity=0.189 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99887765569989878999998851899999998857989987554444334276779999999987644222358998
Q 001727 730 ARLESATDRSEALVTQLHESEEQIGNLETEVKALKESKEMIEDQMENQKSINEDLDTQLTVAKAKLNEGFQKFSSLEVEL 809 (1020)
Q Consensus 730 ~~L~~~~~~~E~~~~Ql~E~E~~i~~LqsEL~~~keS~~l~E~qlk~~~~~~~~Let~L~~~e~E~~el~~Ki~sLE~El 809 (1020)
.......+.+...+..+.|.-..|.+|+.+|.+++.-+..+|.+|.....-| ..++.....+|..||.+|
T Consensus 24 ~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~----------~~~l~~~q~~i~~lE~eL 93 (131)
T 3tnu_A 24 REVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRY----------CMQLAQIQEMIGSVEEQL 93 (131)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
T ss_conf 9998638889987988999998799999999999716888999999999878----------999999999999889889
Q ss_pred HHHHHHHHHHH
Q ss_conf 88663208889
Q 001727 810 EYRNNFCEELE 820 (1020)
Q Consensus 810 e~Er~~~eEl~ 820 (1020)
..=+.-.+-..
T Consensus 94 ~~~r~em~~ql 104 (131)
T 3tnu_A 94 AQLRCEMEQQN 104 (131)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 88899999879
Done!