Query 001727
Match_columns 1020
No_of_seqs 110 out of 112
Neff 3.8
Searched_HMMs 13730
Date Tue Mar 26 17:01:27 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001727.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_1023-1026//hhsearch_scop/001727hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1j8yf1 a.24.13.1 (F:3-86) Sig 12.6 21 0.0015 10.1 3.0 35 506-540 3-37 (84)
2 d1ls1a1 a.24.13.1 (A:1-88) Sig 11.4 24 0.0017 9.7 1.8 35 506-540 7-41 (88)
3 d1wgwa_ a.24.13.1 (A:) Signal 7.8 40 0.0029 8.1 3.3 35 506-540 12-46 (99)
4 d1j5wa_ d.104.1.1 (A:) Glycyl- 7.5 42 0.0031 8.0 2.0 12 792-803 254-265 (281)
5 d1ufza_ a.5.9.1 (A:) HBS1-like 7.2 44 0.0032 7.8 2.9 26 121-146 34-61 (83)
6 d2dkya1 a.60.1.3 (A:8-85) Dele 5.0 70 0.0051 6.5 1.4 13 262-274 59-71 (78)
7 d1x3aa1 a.240.1.1 (A:8-94) Syn 4.7 76 0.0055 6.2 0.6 22 986-1007 57-78 (87)
8 d1uuja_ a.221.1.1 (A:) Lissenc 4.7 76 0.0056 6.2 1.2 13 257-269 62-74 (76)
9 d1r5qa_ a.186.1.1 (A:) Circadi 4.7 45 0.0032 7.8 -1.2 8 442-449 54-61 (98)
10 d1v2za_ a.186.1.1 (A:) Circadi 4.5 47 0.0034 7.7 -1.2 8 442-449 64-71 (106)
No 1
>d1j8yf1 a.24.13.1 (F:3-86) Signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}
Probab=12.64 E-value=21 Score=10.07 Aligned_cols=35 Identities=11% Similarity=0.232 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
Q ss_conf 68999999998532110005788999999984014
Q 001727 506 DWLQVVLNAMLKQRQISKQSLDKLLEDIRIALGYV 540 (1020)
Q Consensus 506 ~wLq~~l~~i~~~~~~~~~~~~~ILe~Ir~AL~~i 540 (1020)
+-|.+.++.+.+....+..++++++.+||.||-+.
T Consensus 3 ~~l~~a~~kl~~~~~i~E~~i~~~l~eIr~ALLeA 37 (84)
T d1j8yf1 3 DNLRDTVRKFLTGSSSYDKAVEDFIKELQKSLISA 37 (84)
T ss_dssp HHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 38999999985789887999999999999999865
No 2
>d1ls1a1 a.24.13.1 (A:1-88) Signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Probab=11.36 E-value=24 Score=9.67 Aligned_cols=35 Identities=26% Similarity=0.310 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
Q ss_conf 68999999998532110005788999999984014
Q 001727 506 DWLQVVLNAMLKQRQISKQSLDKLLEDIRIALGYV 540 (1020)
Q Consensus 506 ~wLq~~l~~i~~~~~~~~~~~~~ILe~Ir~AL~~i 540 (1020)
..|...++.+.++...+..++++++.+||.||=+.
T Consensus 7 ~~l~~a~~~l~g~~~i~E~~i~~~l~eir~ALLeA 41 (88)
T d1ls1a1 7 ARLQEAIGRLRGRGRITEEDLKATLREIRRALMDA 41 (88)
T ss_dssp HHHHHHHHTTTTSCSCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 99999999851899888999999999999999984
No 3
>d1wgwa_ a.24.13.1 (A:) Signal recognition particle 54 kDa protein, SRP54 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.79 E-value=40 Score=8.14 Aligned_cols=35 Identities=17% Similarity=0.247 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
Q ss_conf 68999999998532110005788999999984014
Q 001727 506 DWLQVVLNAMLKQRQISKQSLDKLLEDIRIALGYV 540 (1020)
Q Consensus 506 ~wLq~~l~~i~~~~~~~~~~~~~ILe~Ir~AL~~i 540 (1020)
..|...++.+.++..++..++++++.+|+.||=+.
T Consensus 12 ~~i~~a~~~l~~~~~i~E~~I~~~l~eI~~ALLeA 46 (99)
T d1wgwa_ 12 RKITSALRSLSNATIINEEVLNAMLKEVCTALLEA 46 (99)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 99999999973889788999999999999998874
No 4
>d1j5wa_ d.104.1.1 (A:) Glycyl-tRNA synthetase (GlyRS) alpha chain {Thermotoga maritima [TaxId: 2336]}
Probab=7.47 E-value=42 Score=7.98 Aligned_cols=12 Identities=0% Similarity=0.025 Sum_probs=3.8
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999987644222
Q 001727 792 KAKLNEGFQKFS 803 (1020)
Q Consensus 792 e~E~~el~~Ki~ 803 (1020)
-+|--.-+.+|.
T Consensus 254 VTERa~YI~RIR 265 (281)
T d1j5wa_ 254 VSQRQTYVKRIQ 265 (281)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 899899999999
No 5
>d1ufza_ a.5.9.1 (A:) HBS1-like protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.16 E-value=44 Score=7.82 Aligned_cols=26 Identities=12% Similarity=0.333 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHH
Q ss_conf 05887776564566--677899999975
Q 001727 121 PMKCVKQLNFDQAE--QEQRVHDAVVKT 146 (1020)
Q Consensus 121 LKeCmrQLr~~rEE--qEq~i~eav~~~ 146 (1020)
|-.||.|+|.+--+ .|+.+.+|+++-
T Consensus 34 L~SCldqmR~VvGDsvpe~~lv~avlk~ 61 (83)
T d1ufza_ 34 LYSCLDHMREVLGDAVPDDILTEAILKH 61 (83)
T ss_dssp HHHHHHHHHHHTTTTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHC
T ss_conf 9999999999876567799999999980
No 6
>d2dkya1 a.60.1.3 (A:8-85) Deleted in liver cancer 1 protein, DLC-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.04 E-value=70 Score=6.47 Aligned_cols=13 Identities=46% Similarity=0.772 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 7999899999865
Q 001727 262 LEAECERLRLLVR 274 (1020)
Q Consensus 262 LEaECqRLr~lvR 274 (1020)
|++=|+||.+|-|
T Consensus 59 l~sL~RRL~tLNk 71 (78)
T d2dkya1 59 IEALCRRLNTLNK 71 (78)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999987
No 7
>d1x3aa1 a.240.1.1 (A:8-94) Synapse associated protein 1, SYAP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.72 E-value=76 Score=6.23 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=12.3
Q ss_pred EEEECCCCCHHHHHHHHHHHHC
Q ss_conf 7883167631458899873103
Q 001727 986 LAVVPSKKRGVGLLLKLFLRRK 1007 (1020)
Q Consensus 986 laivP~kk~g~~~~rkll~rrk 1007 (1020)
..+||.+-.--.||++-|+|..
T Consensus 57 ~~LVP~~v~e~~FW~rYF~~v~ 78 (87)
T d1x3aa1 57 FALVPKLVKEEVFWRNYFYRVS 78 (87)
T ss_dssp HHTTTTTSCHHHHHHHHHHHHH
T ss_pred HHHCCCCCCHHHHHHHHHHHHH
T ss_conf 9878787589999999999999
No 8
>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.69 E-value=76 Score=6.20 Aligned_cols=13 Identities=38% Similarity=0.483 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 7799579998999
Q 001727 257 KKVAKLEAECERL 269 (1020)
Q Consensus 257 KKiakLEaECqRL 269 (1020)
|||..||++|..|
T Consensus 62 kKImdLE~~~~~l 74 (76)
T d1uuja_ 62 KKVMELESKLNEA 74 (76)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999986
No 9
>d1r5qa_ a.186.1.1 (A:) Circadian clock protein KaiA, C-terminal domain {Cyanobacterium (Nostoc sp. PCC 7120) [TaxId: 103690]}
Probab=4.68 E-value=45 Score=7.81 Aligned_cols=8 Identities=50% Similarity=0.999 Sum_probs=0.0
Q ss_pred CCCCCCCH
Q ss_conf 55444217
Q 001727 442 GMSLMDDF 449 (1020)
Q Consensus 442 di~LMDDF 449 (1020)
+|+|||+|
T Consensus 54 HmeLmDeF 61 (98)
T d1r5qa_ 54 HMELIDEF 61 (98)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999999
No 10
>d1v2za_ a.186.1.1 (A:) Circadian clock protein KaiA, C-terminal domain {Thermosynechococcus elongatus bp-1 [TaxId: 197221]}
Probab=4.48 E-value=47 Score=7.65 Aligned_cols=8 Identities=50% Similarity=0.850 Sum_probs=0.0
Q ss_pred CCCCCCCH
Q ss_conf 55444217
Q 001727 442 GMSLMDDF 449 (1020)
Q Consensus 442 di~LMDDF 449 (1020)
+|+|||+|
T Consensus 64 HmeLmdeF 71 (106)
T d1v2za_ 64 HVELMDTF 71 (106)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999999
Done!