Your job contains 1 sequence.
>001728
MKPPANGFLPSSAEGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKE
NDFIPNYPNLPSKLICMLHSVTLHADPETDEVYAQMTLQPVNKYEKEAILASDMGLKQNR
QPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRH
IYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALSSSVIS
SDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMF
ETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDESTAGERPSRVSLWETEPVVTP
FYICPPPFFRPKFPKQPGMPDDESDIENAFKRAMPWLGDDFGMKDATSSIFPGLSLVQWM
SMQQNNQFPAAQSGFFPSMVSSTGLHSNFGTDDPSKLLNFQASALAAPNLQFSKANPQNQ
VNQLPQSPIAWTQQQQLQHLLQNPLNQQQQQHPQLHQQRQQQQQLLHPQQSQQQQQQQQN
HHHHNQQPPPPPQLQPSPTPPHSQSQSQSPVPQRPQQQPQQQQQQPQQQIFLPTHVNNGV
LVPNANQNVQQPTVYSQLQQPQLLTSNTQAPQGILSNNKNSYQLTSLPQDSQFQQQMEQS
TGPLQRQQQQSQLQQSSLQFLQQSLAQRAQQQPQVQQLAQQSMSDQQLQSQLQQKLQQQQ
QQQLLSPAGSLLQPQLLQQQLAHQQNQQLSQLPPSQNHQQQLSNNLSASVLVQPQQLPMN
QPQNQNRPLTGTRAHSNHTDGDAPSCSTSPSSNNCQISPSNFLNRNQQGPAMLMGDSVVE
PSSNLVQELHSKSDARIKHELPISKGPEHLKYNGSMTDQVEASSSGTSYCLDPGNIQQNF
SLPTYCLDGDTQSHPRNSLPFVANIDGMAPDTLLSRGYDSQKDLHNLLSNYGGTPRDIET
ELSTAAISSQSFAVPNIPFKPACSNEVGINEAGVLGNGLWANQTQRMRTFTKVCYAIYSL
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 001728
(1020 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2202205 - symbol:ARF19 "auxin response factor ... 1958 2.5e-264 3
TAIR|locus:2204237 - symbol:ARF6 "auxin response factor 6... 1290 1.1e-133 2
TAIR|locus:2152642 - symbol:ARF8 "auxin response factor 8... 1254 6.1e-131 2
TAIR|locus:2035454 - symbol:MP "MONOPTEROS" species:3702 ... 1207 2.7e-126 2
TAIR|locus:2174013 - symbol:ARF2 "auxin response factor 2... 866 1.3e-86 1
TAIR|locus:2025991 - symbol:ARF1 "auxin response factor 1... 831 6.4e-83 1
TAIR|locus:2175098 - symbol:ARF4 "auxin response factor 4... 815 3.2e-81 1
TAIR|locus:2138096 - symbol:ARF9 "auxin response factor 9... 783 1.4e-80 2
TAIR|locus:2039124 - symbol:ARF11 "auxin response factor ... 761 1.7e-78 2
TAIR|locus:2057609 - symbol:ETT "ETTIN" species:3702 "Ara... 771 1.5e-76 1
TAIR|locus:2076765 - symbol:ARF18 "auxin response factor ... 753 1.2e-74 1
TAIR|locus:2009298 - symbol:ARF21 "auxin response factor ... 665 6.0e-71 3
TAIR|locus:2014731 - symbol:ARF14 "auxin response factor ... 650 4.2e-67 2
TAIR|locus:2057517 - symbol:ARF10 "auxin response factor ... 502 1.7e-66 2
TAIR|locus:2036288 - symbol:ARF22 "auxin response factor ... 647 1.8e-66 2
TAIR|locus:2206717 - symbol:ARF20 "auxin response factor ... 628 2.3e-64 2
TAIR|locus:2126460 - symbol:ARF16 "auxin response factor ... 480 2.3e-63 2
TAIR|locus:2026145 - symbol:ARF12 "auxin response factor ... 639 1.4e-62 1
TAIR|locus:2008991 - symbol:ARF13 "AUXIN RESPONSE FACTOR ... 434 3.4e-56 3
TAIR|locus:2029436 - symbol:ARF17 "auxin response factor ... 430 2.6e-54 3
TAIR|locus:2037169 - symbol:ARF23 "auxin response factor ... 369 4.0e-33 1
TAIR|locus:2041404 - symbol:NGA1 "NGATHA1" species:3702 "... 154 5.6e-08 1
TAIR|locus:2085969 - symbol:EDF3 "ethylene response DNA b... 149 2.5e-07 1
TAIR|locus:2079537 - symbol:NGA2 "NGATHA2" species:3702 "... 144 6.7e-07 1
TAIR|locus:2117007 - symbol:NGA4 "NGATHA4" species:3702 "... 141 1.9e-06 1
TAIR|locus:2012438 - symbol:RAV2 "related to ABI3/VP1 2" ... 141 2.2e-06 1
TAIR|locus:2205319 - symbol:RAV1 "related to ABI3/VP1 1" ... 138 4.5e-06 1
TAIR|locus:2031185 - symbol:TEM1 "TEMPRANILLO 1" species:... 138 5.0e-06 1
TAIR|locus:2200950 - symbol:NGA3 "NGATHA3" species:3702 "... 137 6.3e-06 1
TAIR|locus:2039165 - symbol:ABS2 "ABNORMAL SHOOT 2" speci... 128 2.4e-05 1
TAIR|locus:2164215 - symbol:DPA4 "DEVELOPMENT-RELATED PcG... 129 2.8e-05 1
DICTYBASE|DDB_G0285837 - symbol:DDB_G0285837 "BRWD group ... 137 9.8e-05 2
TAIR|locus:2064417 - symbol:HSI2 "high-level expression o... 129 0.00016 1
TAIR|locus:2080782 - symbol:AT3G11580 species:3702 "Arabi... 121 0.00019 1
>TAIR|locus:2202205 [details] [associations]
symbol:ARF19 "auxin response factor 19" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IEA;IDA;TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0009725 "response to hormone
stimulus" evidence=IEA] [GO:0009733 "response to auxin stimulus"
evidence=RCA;IMP;NAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0048366 "leaf
development" evidence=IGI] [GO:0048527 "lateral root development"
evidence=IGI;RCA] [GO:0009723 "response to ethylene stimulus"
evidence=IMP] [GO:0003677 "DNA binding" evidence=IDA] [GO:0010311
"lateral root formation" evidence=IGI] [GO:0007155 "cell adhesion"
evidence=RCA] [GO:0009741 "response to brassinosteroid stimulus"
evidence=RCA] [GO:0010090 "trichome morphogenesis" evidence=RCA]
[GO:0010583 "response to cyclopentenone" evidence=RCA] [GO:0045010
"actin nucleation" evidence=RCA] [GO:0048765 "root hair cell
differentiation" evidence=RCA] [GO:0071555 "cell wall organization"
evidence=RCA] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0046983 "protein dimerization activity"
evidence=IDA] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009733
GO:GO:0009734 GO:GO:0009723 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0046983 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0010311 GO:GO:0048366 HOGENOM:HOG000241141
EMBL:U53672 EMBL:AY008390 EMBL:AY669794 EMBL:AC069143 EMBL:AB493467
EMBL:AJ441312 IPI:IPI00534870 PIR:G86325 RefSeq:NP_173356.1
UniGene:At.10488 ProteinModelPortal:Q8RYC8 SMR:Q8RYC8 IntAct:Q8RYC8
STRING:Q8RYC8 EnsemblPlants:AT1G19220.1 GeneID:838505
KEGG:ath:AT1G19220 GeneFarm:3421 TAIR:At1g19220 eggNOG:NOG331338
InParanoid:Q8RYC8 OMA:WEIEPVI PhylomeDB:Q8RYC8
ProtClustDB:CLSN2914206 Genevestigator:Q8RYC8 GermOnline:AT1G19220
Uniprot:Q8RYC8
Length = 1086
Score = 1958 (694.3 bits), Expect = 2.5e-264, Sum P(3) = 2.5e-264
Identities = 366/487 (75%), Positives = 405/487 (83%)
Query: 1 MKPPANGFLPSSAEGERKTINSELWHACAXXXXXXXXXXXXXXYFPQGHSEQVAASMQKE 60
MK P+NGFLPSS EGE+K INS+LWHACA YFPQGHSEQVAASMQK+
Sbjct: 1 MKAPSNGFLPSSNEGEKKPINSQLWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKQ 60
Query: 61 NDFIPNYPNLPSKLICMLHSVTLHADPETDEVYAQMTLQPVNKYEKEAILASDMGLKQNR 120
DFIPNYPNLPSKLIC+LHSVTLHAD ETDEVYAQMTLQPVNKY++EA+LASDMGLK NR
Sbjct: 61 TDFIPNYPNLPSKLICLLHSVTLHADTETDEVYAQMTLQPVNKYDREALLASDMGLKLNR 120
Query: 121 QPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRH 180
QPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLD+SMQPPAQEIVA+DLHDTTWTFRH
Sbjct: 121 QPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDTTWTFRH 180
Query: 181 IYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALXXXXXX 240
IYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLF+RDEKSQL+LGIRRANRQ P L
Sbjct: 181 IYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFVRDEKSQLMLGIRRANRQTPTLSSSVIS 240
Query: 241 XXXMHIGILXXXXXXXXNNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMF 300
MHIGIL N+SPFTIF+NPRASPSEFV+PLAKYNKA+Y QVSLGMRFRMMF
Sbjct: 241 SDSMHIGILAAAAHANANSSPFTIFFNPRASPSEFVVPLAKYNKALYAQVSLGMRFRMMF 300
Query: 301 ETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDESTAGERPSRVSLWETEPVVTP 360
ETE+ GVRRYMGT+T ISDLDP+RWK SQWRNLQVGWDESTAG+RPSRVS+WE EPV+TP
Sbjct: 301 ETEDCGVRRYMGTVTGISDLDPVRWKGSQWRNLQVGWDESTAGDRPSRVSIWEIEPVITP 360
Query: 361 FYICXXXXXXXXXXXXXGMPDDESDIENAFKRAMPWLGDDFGMKDATSSIFPGLSLVQWM 420
FYIC GMPDDE D+ENAFKRAMPW+G+DFGMKDA SS+FPGLSLVQWM
Sbjct: 361 FYICPPPFFRPKYPRQPGMPDDELDMENAFKRAMPWMGEDFGMKDAQSSMFPGLSLVQWM 420
Query: 421 SMQQNNQFPAAQSGFFPSMVSSTGLHSNFGTDDPSKLLNFQASALAAPNLQFSKANPQNQ 480
SMQQNN + + PS +SS L +NF ++DPSKLLNFQ+ L++ N QF+K N N
Sbjct: 421 SMQQNNPLSGSATPQLPSALSSFNLPNNFASNDPSKLLNFQSPNLSSANSQFNKPNTVNH 480
Query: 481 VNQLPQS 487
++Q Q+
Sbjct: 481 ISQQMQA 487
Score = 566 (204.3 bits), Expect = 2.5e-264, Sum P(3) = 2.5e-264
Identities = 122/234 (52%), Positives = 159/234 (67%)
Query: 793 RAHSNHTDGDA---XXXXXXXXXXXXQISPSNFLNRNQQ-GPAMLMG--DSVVEPSSNLV 846
R+HS HTDG+A +SP+NFL+RNQQ G A + DSV E +SN V
Sbjct: 735 RSHSGHTDGEAPSCSTSPSANNTGHDNVSPTNFLSRNQQQGQAASVSASDSVFERASNPV 794
Query: 847 QELHSKSDARIKHELPISKGP-EHLKYNGSMTDQVEASSSGTSYCLD---PGNIQQNFSL 902
QEL++K+++RI + K EH ++ ++TDQ++ S++GT+YC D P QQ F L
Sbjct: 795 QELYTKTESRISQGMMNMKSAGEHFRFKSAVTDQIDVSTAGTTYCPDVVGPVQQQQTFPL 854
Query: 903 PTYCLDGDTQSH-PRNSLPFVANIDGMAPDTLLSRGYDSQKDLHNLLSNYGGTPRDIETE 961
P++ DGD QSH PRN+L F N++ + D L Y SQKD NL+ NYG TPRDIETE
Sbjct: 855 PSFGFDGDCQSHHPRNNLAFPGNLEAVTSDPL----Y-SQKDFQNLVPNYGNTPRDIETE 909
Query: 962 LSTAAISSQSFAVPNIPFKPACSNEVG-INEAGVL-GNGLWANQTQRMRTFTKV 1013
LS+AAISSQSF +P+IPFKP CSNEVG IN++G++ G GLW NQTQRMRT+TKV
Sbjct: 910 LSSAAISSQSFGIPSIPFKPGCSNEVGGINDSGIMNGGGLWPNQTQRMRTYTKV 963
Score = 60 (26.2 bits), Expect = 2.5e-264, Sum P(3) = 2.5e-264
Identities = 24/57 (42%), Positives = 30/57 (52%)
Query: 597 NNGVL-VPN--ANQNVQQPTVYSQ--LQQPQLL-TSNTQAPQGILS-NNKNSYQLTS 646
NNG + V N + Q+ QPT +SQ LQQ +L T Q I S NK Q+TS
Sbjct: 532 NNGTIAVANQVSCQSPNQPTGFSQSQLQQQSMLPTGAKMTHQNINSMGNKGLSQMTS 588
Score = 45 (20.9 bits), Expect = 1.0e-204, Sum P(2) = 1.0e-204
Identities = 33/162 (20%), Positives = 58/162 (35%)
Query: 821 NFLNRNQQG-PAMLMGDSVVEPSSNLVQELHSKSDARIKHELPISKGPEHLK--YNG--- 874
N +++ Q PAM+ + Q H + + + +L +S+ + YN
Sbjct: 479 NHISQQMQAQPAMVKSQQQQQQQQQ--QHQHQQQQLQQQQQLQMSQQQVQQQGIYNNGTI 536
Query: 875 SMTDQVEASSSGTSYCLDPGNIQQNFSLPTYCLDGDTQSHPR-NSL---------PFVAN 924
++ +QV S +QQ LPT G +H NS+ F
Sbjct: 537 AVANQVSCQSPNQPTGFSQSQLQQQSMLPT----GAKMTHQNINSMGNKGLSQMTSFAQE 592
Query: 925 ID-----GMAPDTLLSRGYDSQKDLHNLLSNYGGTPRDIETE 961
+ M + L R Q LH+L N P+ ++ +
Sbjct: 593 MQFQQQLEMHNSSQLLRNQQEQSSLHSLQQNLSQNPQQLQMQ 634
Score = 40 (19.1 bits), Expect = 3.4e-204, Sum P(2) = 3.4e-204
Identities = 15/60 (25%), Positives = 26/60 (43%)
Query: 595 HVNNGVLVPNANQNVQQPTVYSQLQQPQLLTSNTQAPQGI---LSN---NKNSYQLTSLP 648
H N + P + V +YSQ L+ + P+ I LS+ + S+ + S+P
Sbjct: 867 HPRNNLAFPGNLEAVTSDPLYSQKDFQNLVPNYGNTPRDIETELSSAAISSQSFGIPSIP 926
>TAIR|locus:2204237 [details] [associations]
symbol:ARF6 "auxin response factor 6" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0009725 "response to hormone stimulus"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0009733 "response
to auxin stimulus" evidence=IMP] [GO:0009908 "flower development"
evidence=IGI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0009855 "determination of bilateral symmetry" evidence=RCA]
[GO:0009886 "post-embryonic morphogenesis" evidence=RCA]
[GO:0009887 "organ morphogenesis" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010014
"meristem initiation" evidence=RCA] [GO:0010051 "xylem and phloem
pattern formation" evidence=RCA] [GO:0010073 "meristem maintenance"
evidence=RCA] [GO:0048439 "flower morphogenesis" evidence=RCA]
[GO:0048481 "ovule development" evidence=RCA] [GO:0048507 "meristem
development" evidence=RCA] [GO:0048519 "negative regulation of
biological process" evidence=RCA] InterPro:IPR003311
InterPro:IPR003340 InterPro:IPR010525 InterPro:IPR011525
Pfam:PF02309 Pfam:PF02362 Pfam:PF06507 PROSITE:PS50863
PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009733 GO:GO:0009734
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AC025295
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
GO:GO:0009908 HOGENOM:HOG000241141 EMBL:AF013467 EMBL:AY669788
EMBL:EU550049 EMBL:EU550050 EMBL:EU550051 EMBL:EU550052
EMBL:EU550053 EMBL:EU550054 EMBL:EU550055 EMBL:EU550056
EMBL:EU550057 EMBL:EU550058 EMBL:EU550059 EMBL:EU550060
EMBL:EU550061 EMBL:EU550062 EMBL:EU550063 EMBL:EU550064
EMBL:EU550065 EMBL:EU550066 EMBL:EU550067 EMBL:EU550068
EMBL:EU550069 EMBL:EU550070 EMBL:EU550071 EMBL:EU550072
IPI:IPI00533211 IPI:IPI00656643 PIR:F86427 RefSeq:NP_001031115.1
RefSeq:NP_174323.1 UniGene:At.21939 ProteinModelPortal:Q9ZTX8
SMR:Q9ZTX8 IntAct:Q9ZTX8 STRING:Q9ZTX8 PaxDb:Q9ZTX8 PRIDE:Q9ZTX8
EnsemblPlants:AT1G30330.2 GeneID:839913 KEGG:ath:AT1G30330
GeneFarm:3369 TAIR:At1g30330 eggNOG:NOG288258 InParanoid:Q9ZTX8
OMA:ANSHWRS PhylomeDB:Q9ZTX8 ProtClustDB:CLSN2686713
Genevestigator:Q9ZTX8 GermOnline:AT1G30330 Uniprot:Q9ZTX8
Length = 935
Score = 1290 (459.2 bits), Expect = 1.1e-133, Sum P(2) = 1.1e-133
Identities = 278/504 (55%), Positives = 333/504 (66%)
Query: 1 MKPPANGFLPSSAE--GERKTINSELWHACAXXXXXXXXXXXXXXYFPQGHSEQVAASMQ 58
M+ + GF P E GE++ +NSELWHACA YFPQGHSEQVAAS
Sbjct: 1 MRLSSAGFNPQPHEVTGEKRVLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTN 60
Query: 59 KEND-FIPNYPNLPSKLICMLHSVTLHADPETDEVYAQMTLQPVNKYE-KEAILASDMGL 116
KE D IPNYP+L +LIC LH+VT+HAD ETDEVYAQMTLQP+N E K+ L +++G+
Sbjct: 61 KEVDAHIPNYPSLHPQLICQLHNVTMHADVETDEVYAQMTLQPLNAQEQKDPYLPAELGV 120
Query: 117 KQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTW 176
+RQPT +FCKTLTASDTSTHGGFSVPRRAAEK+FPPLDYS QPPAQE++ARDLHD W
Sbjct: 121 P-SRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELMARDLHDNEW 179
Query: 177 TFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALXX 236
FRHI+RGQPKRHLLTTGWSVFVS KRL AGDSVLFI ++K+QLLLGIRRANR Q +
Sbjct: 180 KFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRRANRPQTVMPS 239
Query: 237 XXXXXXXMHIGILXXXXXXXXNNSPFTIFYNPRASPSEFVIPLAKYNKAMY-TQVSLGMR 295
MH+G+L NS FTIFYNPRASPSEFVIPLAKY KA+Y T+VS+GMR
Sbjct: 240 SVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMR 299
Query: 296 FRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDESTAGERPSRVSLWETE 355
FRM+FETEES VRRYMGTIT I DLDP RW NS WR+++VGWDESTAGER RVSLWE E
Sbjct: 300 FRMLFETEESSVRRYMGTITGICDLDPTRWANSHWRSVKVGWDESTAGERQPRVSLWEIE 359
Query: 356 PVVT-PFYICXXXXXXXXXXXXXGMPD----DESDIENAFKRAMPWLGDDFGMKDATSSI 410
P+ T P Y G+P E D+ + + W D G++
Sbjct: 360 PLTTFPMYP-SPFPLRLKRPWPPGLPSFHGLKEDDMGMSMSSPLMW---DRGLQSLN--- 412
Query: 411 FPGLSLVQWMSMQQNNQ-FPAAQSGFFPSMVSSTGLHSNFGTDDPSK----LLNFQAS-- 463
F G+ + WM + + Q+ + +M ++ L G D P+K LL FQ S
Sbjct: 413 FQGMGVNPWMQPRLDTSGLLGMQNDVYQAMAAAA-LQDMRGID-PAKAAASLLQFQNSPG 470
Query: 464 -ALAAPNLQFSKANPQNQVNQLPQ 486
++ +P+L PQ QL Q
Sbjct: 471 FSMQSPSL----VQPQMLQQQLSQ 490
Score = 41 (19.5 bits), Expect = 1.1e-133, Sum P(2) = 1.1e-133
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 606 NQNVQQPTVYSQLQQPQLLTSNTQAPQGILSNNKNSY 642
+Q QQ Q QQ L T PQ + N++
Sbjct: 522 SQQQQQQLSQQQQQQAYLGVPETHQPQSQAQSQSNNH 558
>TAIR|locus:2152642 [details] [associations]
symbol:ARF8 "auxin response factor 8" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS;TAS]
[GO:0009733 "response to auxin stimulus" evidence=IMP] [GO:0009908
"flower development" evidence=IGI] [GO:0009855 "determination of
bilateral symmetry" evidence=RCA] [GO:0009886 "post-embryonic
morphogenesis" evidence=RCA] [GO:0009887 "organ morphogenesis"
evidence=RCA] [GO:0009909 "regulation of flower development"
evidence=RCA] [GO:0010051 "xylem and phloem pattern formation"
evidence=RCA] [GO:0048439 "flower morphogenesis" evidence=RCA]
[GO:0048481 "ovule development" evidence=RCA] [GO:0048507 "meristem
development" evidence=RCA] [GO:0048519 "negative regulation of
biological process" evidence=RCA] InterPro:IPR003311
InterPro:IPR003340 InterPro:IPR010525 InterPro:IPR011525
Pfam:PF02309 Pfam:PF02362 Pfam:PF06507 PROSITE:PS50863
PROSITE:PS50962 SMART:SM01019 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009733 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0009908 HOGENOM:HOG000241141
ProtClustDB:CLSN2686713 EMBL:AF042196 EMBL:AY669790 EMBL:AB024026
IPI:IPI00525703 IPI:IPI00846789 RefSeq:NP_001078672.1
RefSeq:NP_198518.1 UniGene:At.23446 ProteinModelPortal:Q9FGV1
SMR:Q9FGV1 IntAct:Q9FGV1 STRING:Q9FGV1 PaxDb:Q9FGV1 PRIDE:Q9FGV1
EnsemblPlants:AT5G37020.1 GeneID:833672 KEGG:ath:AT5G37020
GeneFarm:3372 TAIR:At5g37020 eggNOG:NOG292968 InParanoid:Q9FGV1
OMA:NDAYLPA PhylomeDB:Q9FGV1 Genevestigator:Q9FGV1
GermOnline:AT5G37020 Uniprot:Q9FGV1
Length = 811
Score = 1254 (446.5 bits), Expect = 6.1e-131, Sum P(2) = 6.1e-131
Identities = 258/480 (53%), Positives = 320/480 (66%)
Query: 1 MKPPANGFLPSSAEGERKTINSELWHACAXXXXXXXXXXXXXXYFPQGHSEQVAASMQKE 60
MK +G EGE K +NSELWHACA YFPQGHSEQVAA+ KE
Sbjct: 1 MKLSTSGLGQQGHEGE-KCLNSELWHACAGPLVSLPSSGSRVVYFPQGHSEQVAATTNKE 59
Query: 61 ND-FIPNYPNLPSKLICMLHSVTLHADPETDEVYAQMTLQPVNKYE-KEAILASDMGLKQ 118
D IPNYP+LP +LIC LH+VT+HAD ETDEVYAQMTLQP+ E KE + ++G+
Sbjct: 60 VDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPEEQKETFVPIELGIP- 118
Query: 119 NRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTF 178
++QP+ +FCKTLTASDTSTHGGFSVPRRAAEK+FPPLDY++QPPAQE++ARDLHD W F
Sbjct: 119 SKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYTLQPPAQELIARDLHDVEWKF 178
Query: 179 RHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALXXXX 238
RHI+RGQPKRHLLTTGWSVFVS KRL AGDSV+FIR+EK+QL LGIR A R Q +
Sbjct: 179 RHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFIRNEKNQLFLGIRHATRPQTIVPSSV 238
Query: 239 XXXXXMHIGILXXXXXXXXNNSPFTIFYNPRASPSEFVIPLAKYNKAMY-TQVSLGMRFR 297
MHIG+L NS FT+F++PRAS SEFVI L+KY KA++ T++S+GMRFR
Sbjct: 239 LSSDSMHIGLLAAAAHASATNSCFTVFFHPRASQSEFVIQLSKYIKAVFHTRISVGMRFR 298
Query: 298 MMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDESTAGERPSRVSLWETEPV 357
M+FETEES VRRYMGTIT ISDLD +RW NS WR+++VGWDESTAGER RVSLWE EP+
Sbjct: 299 MLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPL 358
Query: 358 VT-PFY--ICXXXXXXXXXXXXXGMPDDESDIENAFKRAMPWLGDDFGMKDATSSI-FPG 413
T P Y + +PD D+ + + WL G + + +P
Sbjct: 359 TTFPMYPSLFPLRLKRPWHAGTSSLPDGRGDLGSG----LTWLRGGGGEQQGLLPLNYPS 414
Query: 414 LSLVQWMSMQQN-NQFPAAQSGFFPSMVSSTGLHSNFGTDDPSKLLNFQASALAAPNLQF 472
+ L WM + + +Q + + +M+++ GL N G DP L Q L P+ Q+
Sbjct: 415 VGLFPWMQQRLDLSQMGTDNNQQYQAMLAA-GLQ-NIGGGDP---LRQQFVQLQEPHHQY 469
Score = 51 (23.0 bits), Expect = 6.1e-131, Sum P(2) = 6.1e-131
Identities = 21/68 (30%), Positives = 35/68 (51%)
Query: 886 GTSYCLDPGNIQQNFSLPTYCLDGDTQSHPRNSLPFVANIDGMA---PDTLLSRGYDSQK 942
G S L+PGN QN SL + +D D+ +++P A+ G A P +L G+ Q
Sbjct: 624 GKSLALEPGN-PQNPSL--FGVDPDSGLFLPSTVPRFASSSGDAEASPMSLTDSGF--QN 678
Query: 943 DLHNLLSN 950
L++ + +
Sbjct: 679 SLYSCMQD 686
>TAIR|locus:2035454 [details] [associations]
symbol:MP "MONOPTEROS" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA;ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;IEP]
[GO:0009725 "response to hormone stimulus" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS;TAS] [GO:0009733 "response to auxin
stimulus" evidence=IEP;RCA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0042802 "identical protein binding" evidence=IPI]
[GO:0016020 "membrane" evidence=IDA] [GO:0009790 "embryo
development" evidence=IGI] [GO:0009908 "flower development"
evidence=IGI] [GO:0010305 "leaf vascular tissue pattern formation"
evidence=IGI] [GO:0048364 "root development" evidence=IGI]
[GO:0048507 "meristem development" evidence=IGI;RCA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IDA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=RCA] [GO:0007155 "cell adhesion" evidence=RCA] [GO:0009741
"response to brassinosteroid stimulus" evidence=RCA] [GO:0009855
"determination of bilateral symmetry" evidence=RCA] [GO:0009886
"post-embryonic morphogenesis" evidence=RCA] [GO:0009887 "organ
morphogenesis" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009944 "polarity specification of
adaxial/abaxial axis" evidence=RCA] [GO:0009965 "leaf
morphogenesis" evidence=RCA] [GO:0010014 "meristem initiation"
evidence=RCA] [GO:0010051 "xylem and phloem pattern formation"
evidence=IMP;RCA] [GO:0010073 "meristem maintenance" evidence=RCA]
[GO:0010090 "trichome morphogenesis" evidence=RCA] [GO:0016246 "RNA
interference" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0045010 "actin nucleation"
evidence=RCA] [GO:0048439 "flower morphogenesis" evidence=RCA]
[GO:0048481 "ovule development" evidence=RCA] [GO:0048519 "negative
regulation of biological process" evidence=RCA] [GO:0048527
"lateral root development" evidence=RCA] [GO:0048765 "root hair
cell differentiation" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0071555 "cell wall organization"
evidence=RCA] [GO:0009942 "longitudinal axis specification"
evidence=IMP] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009733
GO:GO:0009734 GO:GO:0016020 GO:GO:0003700 GO:GO:0006351
GO:GO:0048364 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0044212 GO:GO:0009908 GO:GO:0048507
EMBL:AC007797 KO:K14486 EMBL:AF037228 EMBL:AF037229 EMBL:AF334716
EMBL:BT002050 EMBL:BT008805 EMBL:AB199792 EMBL:U79557 EMBL:EF598523
EMBL:EF598524 EMBL:EF598525 EMBL:EF598526 EMBL:EF598527
EMBL:EF598528 EMBL:EF598529 EMBL:EF598530 EMBL:EF598531
EMBL:EF598532 EMBL:EF598533 EMBL:EF598534 EMBL:EF598535
EMBL:EF598536 EMBL:EF598537 EMBL:EF598538 EMBL:EF598539
EMBL:EF598540 EMBL:EF598541 EMBL:EF598542 EMBL:EF598543
EMBL:EF598544 EMBL:EF598545 EMBL:EF598546 IPI:IPI00538603
PIR:G86331 PIR:T51807 RefSeq:NP_173414.1 UniGene:At.10494
UniGene:At.41731 ProteinModelPortal:P93024 SMR:P93024 IntAct:P93024
STRING:P93024 PaxDb:P93024 PRIDE:P93024 EnsemblPlants:AT1G19850.1
GeneID:838573 KEGG:ath:AT1G19850 GeneFarm:3368 TAIR:At1g19850
eggNOG:NOG291711 InParanoid:P93024 OMA:ARYNKAT PhylomeDB:P93024
ProtClustDB:CLSN2682929 Genevestigator:P93024 GermOnline:AT1G19850
GO:GO:0010305 GO:GO:0009942 Uniprot:P93024
Length = 902
Score = 1207 (429.9 bits), Expect = 2.7e-126, Sum P(2) = 2.7e-126
Identities = 259/489 (52%), Positives = 315/489 (64%)
Query: 15 GERK-TINSELWHACAXXXXXXXXXXXXXXYFPQGHSEQVAASMQKE-NDFIPNYPNLPS 72
G RK INSELWHACA YF QGHSEQVA S ++ +PNYPNLPS
Sbjct: 45 GTRKPVINSELWHACAGPLVCLPQVGSLVYYFSQGHSEQVAVSTRRSATTQVPNYPNLPS 104
Query: 73 KLICMLHSVTLHADPETDEVYAQMTLQPVNKYEKEAILASDMG-LKQNRQPTEFFCKTLT 131
+L+C +H+VTLHAD ++DE+YAQM+LQPV+ E++ D G L+ ++ PTEFFCKTLT
Sbjct: 105 QLMCQVHNVTLHADKDSDEIYAQMSLQPVHS-ERDVFPVPDFGMLRGSKHPTEFFCKTLT 163
Query: 132 ASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQPKRHLL 191
ASDTSTHGGFSVPRRAAEK+FPPLDYS QPP QE+V RDLH+ TWTFRHIYRGQPKRHLL
Sbjct: 164 ASDTSTHGGFSVPRRAAEKLFPPLDYSAQPPTQELVVRDLHENTWTFRHIYRGQPKRHLL 223
Query: 192 TTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALXXXXXXXXXMHIGILXX 251
TTGWS+FV +KRL AGDSVLFIRDEKSQL++G+RRANRQQ AL MHIG+L
Sbjct: 224 TTGWSLFVGSKRLRAGDSVLFIRDEKSQLMVGVRRANRQQTALPSSVLSADSMHIGVLAA 283
Query: 252 XXXXXXNNSPFTIFYNPRASPSEFVIPLAKYNKAMY-TQVSLGMRFRMMFETEESGVRRY 310
N +PF IFYNPRA P+EFVIPLAKY KA+ +Q+S+GMRF MMFETE+SG RRY
Sbjct: 284 AAHATANRTPFLIFYNPRACPAEFVIPLAKYRKAICGSQLSVGMRFGMMFETEDSGKRRY 343
Query: 311 MGTITSISDLDPLRWKNSQWRNLQVGWDESTAGERPSRVSLWETEPVVTP--FYICXXXX 368
MGTI ISDLDPLRW S+WRNLQV WDE ++P+RVS W+ E TP +I
Sbjct: 344 MGTIVGISDLDPLRWPGSKWRNLQVEWDEPGCNDKPTRVSPWDIE---TPESLFIFPSLT 400
Query: 369 XXXXXXXXXGMPDDESDIENAFKRAMPWLGDDF-GMKDATSSIFPGLSLVQWMSMQQ--- 424
E++ + KR + + D G+ S FP ++ Q M M
Sbjct: 401 SGLKRQLHPSYFAGETEWGSLIKRPLIRVPDSANGIMPYAS--FPSMASEQLMKMMMRPH 458
Query: 425 NNQ-FPAAQSGFFPSMVSSTG-LHSNFGTDDPSKLLNFQASALAAPNLQF----SKANPQ 478
NNQ P+ S ++V G L + P ++N Q S + P + S +N
Sbjct: 459 NNQNVPSFMSEMQQNIVMGNGGLLGDMKMQQPL-MMN-QKSEMVQPQNKLTVNPSASNTS 516
Query: 479 NQVNQLPQS 487
Q L QS
Sbjct: 517 GQEQNLSQS 525
Score = 54 (24.1 bits), Expect = 2.7e-126, Sum P(2) = 2.7e-126
Identities = 29/130 (22%), Positives = 59/130 (45%)
Query: 896 IQQN-FSLPTYCLDGDTQSHPRNSLPFVANIDGMAPDTLLSRGYDSQKDLHNLLSNYGGT 954
+QQ+ ++ C+ T S+ + P ++N + D + D Q L T
Sbjct: 673 MQQDLYASQNICMSNSTTSNILD--PPLSNT--VLDDFCAIKDTDFQNHPSGCLVGNNNT 728
Query: 955 P--RDIETELSTAAIS-SQSFAVPNIPFKPA----CSNEVGINEAGVLGNGL---WAN-Q 1003
+D+++++++A+ + SQ+F+ + P S+ V ++ + N W
Sbjct: 729 SFAQDVQSQITSASFADSQAFSRQDFPDNSGGTGTSSSNVDFDDCSLRQNSKGSSWQKIA 788
Query: 1004 TQRMRTFTKV 1013
T R+RT+TKV
Sbjct: 789 TPRVRTYTKV 798
>TAIR|locus:2174013 [details] [associations]
symbol:ARF2 "auxin response factor 2" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0009725 "response
to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IMP;TAS] [GO:0009911 "positive regulation of flower
development" evidence=IMP] [GO:0010047 "fruit dehiscence"
evidence=IMP] [GO:0010150 "leaf senescence" evidence=IMP]
[GO:0010227 "floral organ abscission" evidence=IMP] [GO:0008285
"negative regulation of cell proliferation" evidence=IMP]
[GO:0048481 "ovule development" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0009737 "response to abscisic acid
stimulus" evidence=IMP] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0042744 "hydrogen peroxide catabolic process"
evidence=RCA] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
GO:GO:0009737 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0045892 GO:GO:0008285 GO:GO:0009734 GO:GO:0043565
GO:GO:0003700 GO:GO:0006351 GO:GO:0010150 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 GO:GO:0009911 GO:GO:0010047
GO:GO:0010227 GO:GO:0048481 EMBL:AY669787 EMBL:AB016880
EMBL:AF336918 EMBL:AF378862 EMBL:BT000784 EMBL:BT001072
EMBL:AK221252 EMBL:AK221254 EMBL:AK221274 EMBL:AK221277
EMBL:AK221282 EMBL:AK221305 EMBL:U89771 EMBL:AJ441313 EMBL:AJ458328
IPI:IPI00518739 RefSeq:NP_201006.2 RefSeq:NP_851244.1
RefSeq:NP_974980.1 UniGene:At.21704 ProteinModelPortal:Q94JM3
SMR:Q94JM3 DIP:DIP-46014N IntAct:Q94JM3 STRING:Q94JM3 PaxDb:Q94JM3
PRIDE:Q94JM3 EnsemblPlants:AT5G62000.1 EnsemblPlants:AT5G62000.2
EnsemblPlants:AT5G62000.3 GeneID:836321 KEGG:ath:AT5G62000
GeneFarm:3364 TAIR:At5g62000 eggNOG:NOG255064 InParanoid:Q94JM3
OMA:HTESVEC PhylomeDB:Q94JM3 ProtClustDB:CLSN2680590
Genevestigator:Q94JM3 GermOnline:AT5G62000 Uniprot:Q94JM3
Length = 859
Score = 866 (309.9 bits), Expect = 1.3e-86, P = 1.3e-86
Identities = 168/339 (49%), Positives = 218/339 (64%)
Query: 23 ELWHACAXXXXXXXXXXXXXXYFPQGHSEQVAASM-QKENDFIPNYPNLPSKLICMLHSV 81
ELWHACA YFPQGH EQV AS Q +P Y +LPSKL+C + +V
Sbjct: 61 ELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPLY-DLPSKLLCRVINV 119
Query: 82 TLHADPETDEVYAQMTLQPVNKYEKEAILASDMGLKQNRQPTEFFCKTLTASDTSTHGGF 141
L A+ +TDEVYAQ+TL P ++ AI R FCKTLTASDTSTHGGF
Sbjct: 120 DLKAEADTDEVYAQITLLPEANQDENAIEKEAPLPPPPRFQVHSFCKTLTASDTSTHGGF 179
Query: 142 SVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVST 201
SV RR A++ PPLD S QPP QE+VA+DLH W FRHI+RGQP+RHLL +GWSVFVS+
Sbjct: 180 SVLRRHADECLPPLDMSRQPPTQELVAKDLHANEWRFRHIFRGQPRRHLLQSGWSVFVSS 239
Query: 202 KRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALXXXXXXXXXMHIGILXXXXXXXXNNSP 261
KRL AGD+ +F+R E +L +G+RRA RQQ + MH+G+L +
Sbjct: 240 KRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAISTGTM 299
Query: 262 FTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISDLD 321
FT++Y PR SPSEF++P +Y +++ S+GMRF+M FE EE+ +R+ GTI I + D
Sbjct: 300 FTVYYKPRTSPSEFIVPFDQYMESVKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEESD 359
Query: 322 PLRWKNSQWRNLQVGWDESTAGERPSRVSLWETEPVVTP 360
P RW S+WR+L+V WDE+++ RP RVS W+ EP + P
Sbjct: 360 PTRWPKSKWRSLKVRWDETSSIPRPDRVSPWKVEPALAP 398
>TAIR|locus:2025991 [details] [associations]
symbol:ARF1 "auxin response factor 1" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding"
evidence=IEA;IDA;IPI] [GO:0005634 "nucleus" evidence=ISM;IEA;ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;TAS] [GO:0009725 "response to hormone stimulus"
evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS;TAS] [GO:0010150 "leaf
senescence" evidence=IGI] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0007267 "cell-cell signaling" evidence=RCA] [GO:0009616 "virus
induced gene silencing" evidence=RCA] [GO:0010267 "production of
ta-siRNAs involved in RNA interference" evidence=RCA] [GO:0016246
"RNA interference" evidence=RCA] [GO:0035196 "production of miRNAs
involved in gene silencing by miRNA" evidence=RCA] [GO:0009733
"response to auxin stimulus" evidence=IEP] InterPro:IPR003311
InterPro:IPR003340 InterPro:IPR010525 InterPro:IPR011525
Pfam:PF02309 Pfam:PF02362 Pfam:PF06507 PROSITE:PS50863
PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0045892 GO:GO:0009733
GO:GO:0009734 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0010150 EMBL:AC007258 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 EMBL:U83245 EMBL:AY133723 EMBL:BT002748
IPI:IPI00518211 IPI:IPI00520405 PIR:D96621 RefSeq:NP_001031208.1
RefSeq:NP_176184.1 RefSeq:NP_849830.1 UniGene:At.74832
ProteinModelPortal:Q8L7G0 SMR:Q8L7G0 IntAct:Q8L7G0 STRING:Q8L7G0
EnsemblPlants:AT1G59750.1 EnsemblPlants:AT1G59750.3 GeneID:842268
KEGG:ath:AT1G59750 GeneFarm:3363 TAIR:At1g59750 eggNOG:NOG257828
HOGENOM:HOG000241141 InParanoid:Q8L7G0 KO:K14486 OMA:QMPSFNL
PhylomeDB:Q8L7G0 ProtClustDB:CLSN2679699 Genevestigator:Q8L7G0
GermOnline:AT1G59750 Uniprot:Q8L7G0
Length = 665
Score = 831 (297.6 bits), Expect = 6.4e-83, P = 6.4e-83
Identities = 162/338 (47%), Positives = 222/338 (65%)
Query: 23 ELWHACAXXXXXXXXXXXXXXYFPQGHSEQVAASM-QKENDFIPNYPNLPSKLICMLHSV 81
ELWHACA YFP+GH EQ+ ASM Q +P++ NLPSK++C + ++
Sbjct: 22 ELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQMPSF-NLPSKILCKVINI 80
Query: 82 TLHADPETDEVYAQMTLQPVNKYEKEAILASDMGLKQNRQPT-EFFCKTLTASDTSTHGG 140
A+PETDEVYAQ+TL P + ++ + D +++ + T FCKTLTASDTSTHGG
Sbjct: 81 QRRAEPETDEVYAQITLLP--ELDQSEPTSPDAPVQEPEKCTVHSFCKTLTASDTSTHGG 138
Query: 141 FSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVS 200
FSV RR A+ PPLD S QPP QE+VA DLH++ W FRHI+RGQP+RHLLTTGWSVFVS
Sbjct: 139 FSVLRRHADDCLPPLDMSQQPPWQELVATDLHNSEWHFRHIFRGQPRRHLLTTGWSVFVS 198
Query: 201 TKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALXXXXXXXXXMHIGILXXXXXXXXNNS 260
+K+L AGD+ +F+R E +L +G+RR RQQ + MHIG+L +
Sbjct: 199 SKKLVAGDAFIFLRGENEELRVGVRRHMRQQTNIPSSVISSHSMHIGVLATAAHAITTGT 258
Query: 261 PFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISDL 320
F++FY PR S SEF++ + +Y +A ++S+GMRF+M FE EE+ +R+ GTI + +
Sbjct: 259 IFSVFYKPRTSRSEFIVSVNRYLEAKTQKLSVGMRFKMRFEGEEAPEKRFSGTIVGVQEN 318
Query: 321 DPLRWKNSQWRNLQVGWDESTAGERPSRVSLWETEPVV 358
W +S+WR+L+V WDE ++ RP RVS WE EP+V
Sbjct: 319 KSSVWHDSEWRSLKVQWDEPSSVFRPERVSPWELEPLV 356
>TAIR|locus:2175098 [details] [associations]
symbol:ARF4 "auxin response factor 4" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0009725 "response to hormone stimulus"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0010158 "abaxial
cell fate specification" evidence=IGI] [GO:0010050 "vegetative
phase change" evidence=IGI] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009734
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 EMBL:AB011483 GO:GO:0010050
HOGENOM:HOG000241141 GO:GO:0010158 EMBL:AF013466 EMBL:AF344313
EMBL:AY080832 EMBL:AY113977 IPI:IPI00525857 RefSeq:NP_200853.1
UniGene:At.6797 ProteinModelPortal:Q9ZTX9 SMR:Q9ZTX9 IntAct:Q9ZTX9
STRING:Q9ZTX9 PaxDb:Q9ZTX9 PRIDE:Q9ZTX9 EnsemblPlants:AT5G60450.1
GeneID:836166 KEGG:ath:AT5G60450 GeneFarm:3367 TAIR:At5g60450
eggNOG:NOG277773 InParanoid:Q9ZTX9 OMA:RILYTDS PhylomeDB:Q9ZTX9
ProtClustDB:CLSN2686689 Genevestigator:Q9ZTX9 GermOnline:AT5G60450
Uniprot:Q9ZTX9
Length = 788
Score = 815 (292.0 bits), Expect = 3.2e-81, P = 3.2e-81
Identities = 170/359 (47%), Positives = 217/359 (60%)
Query: 11 SSAEGERKTINSELWHACAXXXXXXXXXXXXXXYFPQGHSEQVAASMQKENDFIPNYPNL 70
SS+ G +I SELWHACA YFPQGH EQ A IP + +L
Sbjct: 53 SSSTGSASSIYSELWHACAGPLTCLPKKGNVVVYFPQGHLEQDAMVSYSSPLEIPKF-DL 111
Query: 71 PSKLICMLHSVTLHADPETDEVYAQMTLQPVNKYEK---EAILASDMGLKQNRQPTE--- 124
+++C + +V L A+ +TDEVY Q+TL P+ ++ E ++G ++ R +
Sbjct: 112 NPQIVCRVVNVQLLANKDTDEVYTQVTLLPLQEFSMLNGEGKEVKELGGEEERNGSSSVK 171
Query: 125 ----FFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRH 180
FCKTLTASDTSTHGGFSVPRRAAE F PLDY Q P+QE++A+DLH W FRH
Sbjct: 172 RTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFAPLDYKQQRPSQELIAKDLHGVEWKFRH 231
Query: 181 IYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALXXXXXX 240
IYRGQP+RHLLTTGWS+FVS K L +GD+VLF+RDE +L LGIRRA R + L
Sbjct: 232 IYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRDEGGELRLGIRRAARPRNGLPDSIIE 291
Query: 241 XXXMHIGILXXXXXXXXNNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMF 300
IL S F +FY+PRA+ +EFVIP KY ++ + V +G RFRM F
Sbjct: 292 KNSCS-NILSLVANAVSTKSMFHVFYSPRATHAEFVIPYEKYITSIRSPVCIGTRFRMRF 350
Query: 301 ETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDESTAGERPSRVSLWETEPVVT 359
E ++S RR G +T + DLDP RW NS+WR L V WDES + RVS WE +P V+
Sbjct: 351 EMDDSPERRCAGVVTGVCDLDPYRWPNSKWRCLLVRWDESFVSDHQERVSPWEIDPSVS 409
>TAIR|locus:2138096 [details] [associations]
symbol:ARF9 "auxin response factor 9" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;TAS] [GO:0009725 "response to hormone stimulus"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0009734
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 HOGENOM:HOG000241141
EMBL:AF082176 EMBL:AC002343 EMBL:AL078468 EMBL:AL161560
EMBL:AF344312 EMBL:AK221865 EMBL:AK228263 IPI:IPI00519218
IPI:IPI00657180 PIR:T08917 RefSeq:NP_001031706.1 RefSeq:NP_194129.1
UniGene:At.3396 ProteinModelPortal:Q9XED8 SMR:Q9XED8 IntAct:Q9XED8
PaxDb:Q9XED8 PRIDE:Q9XED8 EnsemblPlants:AT4G23980.1 GeneID:828498
KEGG:ath:AT4G23980 GeneFarm:3373 TAIR:At4g23980 eggNOG:NOG300390
InParanoid:Q9XED8 OMA:YAQITLI PhylomeDB:Q9XED8
ProtClustDB:CLSN2685375 Genevestigator:Q9XED8 Uniprot:Q9XED8
Length = 638
Score = 783 (280.7 bits), Expect = 1.4e-80, Sum P(2) = 1.4e-80
Identities = 157/339 (46%), Positives = 212/339 (62%)
Query: 23 ELWHACAXXXXXXXXXXXXXXYFPQGHSEQVAASMQKE--NDFIPNYPNLPSKLICMLHS 80
ELW CA YFPQGH EQ+ AS Q+ N P + LP K++C + +
Sbjct: 12 ELWKLCAGPLVDVPQAQERVYYFPQGHMEQLEASTQQVDLNTMKPLFV-LPPKILCNVMN 70
Query: 81 VTLHADPETDEVYAQMTLQPVNKYEKEAILASDMGLKQNRQP-TEFFCKTLTASDTSTHG 139
V+L A+ +TDEVYAQ+TL PV E + ++ D + ++P F K LTASDTSTHG
Sbjct: 71 VSLQAEKDTDEVYAQITLIPVGT-EVDEPMSPDPSPPELQRPKVHSFSKVLTASDTSTHG 129
Query: 140 GFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVFV 199
GFSV R+ A + PPLD + Q P QE+VA D+H W F+HI+RGQP+RHLLTTGWS FV
Sbjct: 130 GFSVLRKHATECLPPLDMTQQTPTQELVAEDVHGYQWKFKHIFRGQPRRHLLTTGWSTFV 189
Query: 200 STKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALXXXXXXXXXMHIGILXXXXXXXXNN 259
++KRL AGD+ +F+R E +L +G+RRAN QQ ++ MH+G+L
Sbjct: 190 TSKRLVAGDTFVFLRGENGELRVGVRRANLQQSSMPSSVISSHSMHLGVLATARHATQTK 249
Query: 260 SPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISD 319
+ F ++Y PR S +F+I L KY +AM + S+GMRF+M FE E+S RRY GT+ + D
Sbjct: 250 TMFIVYYKPRTS--QFIISLNKYLEAMSNKFSVGMRFKMRFEGEDSPERRYSGTVIGVKD 307
Query: 320 LDPLRWKNSQWRNLQVGWDESTAGERPSRVSLWETEPVV 358
P WK+S+WR L+V WDE + RP++VS WE EP V
Sbjct: 308 CSP-HWKDSKWRCLEVHWDEPASISRPNKVSPWEIEPFV 345
Score = 45 (20.9 bits), Expect = 1.4e-80, Sum P(2) = 1.4e-80
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 980 KPACSNEVGINEAGVLGNGLWANQTQRMRTFTKVC 1014
+P +EV + G+ + LW++ + F + C
Sbjct: 360 RPRQVSEVSALDVGITASNLWSSVLTQPHEFAQSC 394
Score = 41 (19.5 bits), Expect = 3.6e-80, Sum P(2) = 3.6e-80
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 826 NQQGPAMLMGDSVVEPSSNLVQELHSKSDARIKHELP 862
+ +G ML+GD N+V+ + S +K P
Sbjct: 576 DDEGDMMLVGDDPWPEFCNMVKRIFIWSKEEVKKMTP 612
Score = 38 (18.4 bits), Expect = 7.4e-80, Sum P(2) = 7.4e-80
Identities = 10/41 (24%), Positives = 22/41 (53%)
Query: 953 GTPRDIETELSTAAISSQSFAVPNIPFKPACS-NEV-GINE 991
G+P++++++ S++ S + +P A N + G NE
Sbjct: 509 GSPKEVQSKQSSSTRSRTKVQMQGVPVGRAVDLNALKGYNE 549
>TAIR|locus:2039124 [details] [associations]
symbol:ARF11 "auxin response factor 11" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0009725 "response to hormone stimulus"
evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0009506 "plasmodesma" evidence=IDA]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 GO:GO:0009506
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009734
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 EMBL:AC006526 EMBL:AC006418
HOGENOM:HOG000241141 EMBL:AY669791 EMBL:AK229757 EMBL:BX837073
EMBL:AK229924 IPI:IPI00544804 IPI:IPI00547357 IPI:IPI00656718
PIR:A84904 RefSeq:NP_001031548.1 RefSeq:NP_182176.2
RefSeq:NP_973701.1 UniGene:At.36497 ProteinModelPortal:Q9ZPY6
SMR:Q9ZPY6 PRIDE:Q9ZPY6 EnsemblPlants:AT2G46530.3 GeneID:819264
KEGG:ath:AT2G46530 GeneFarm:3388 TAIR:At2g46530 eggNOG:NOG303653
InParanoid:Q9ZPY6 OMA:MFEIEGE PhylomeDB:Q9ZPY6
ProtClustDB:CLSN2681223 ArrayExpress:Q9ZPY6 Genevestigator:Q9ZPY6
Uniprot:Q9ZPY6
Length = 622
Score = 761 (272.9 bits), Expect = 1.7e-78, Sum P(2) = 1.7e-78
Identities = 159/338 (47%), Positives = 207/338 (61%)
Query: 22 SELWHACAXXXXXXXXXXXXXXYFPQGHSEQVAASMQKE--NDFIPNYPNLPSKLICMLH 79
+ELW ACA YFPQGH EQ+ AS + + IP + NLP K++C +
Sbjct: 41 TELWKACAGPLVEVPRYGERVFYFPQGHMEQLVASTNQGVVDQEIPVF-NLPPKILCRVL 99
Query: 80 SVTLHADPETDEVYAQMTLQPVNKYEKEAILASDMGLKQNRQPT-EFFCKTLTASDTSTH 138
SVTL A+ ETDEVYAQ+TLQP + L D L + +PT + F K LTASDTSTH
Sbjct: 100 SVTLKAEHETDEVYAQITLQPEEDQSEPTSL--DPPLVEPAKPTVDSFVKILTASDTSTH 157
Query: 139 GGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVF 198
GGFSV R+ A + P LD + P QE+VARDLH W F+HI+RGQP+RHLLTTGWS F
Sbjct: 158 GGFSVLRKHATECLPSLDMTQPTPTQELVARDLHGYEWRFKHIFRGQPRRHLLTTGWSTF 217
Query: 199 VSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALXXXXXXXXXMHIGILXXXXXXXXN 258
V++KRL AGD+ +F+R E L +G+RR +QQ + M +G+L
Sbjct: 218 VTSKRLVAGDAFVFLRGETGDLRVGVRRLAKQQSTMPASVISSQSMRLGVLATASHAVTT 277
Query: 259 NSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSIS 318
+ F +FY PR S +F+I + KY AM SLGMR+RM FE EES R + GTI
Sbjct: 278 TTIFVVFYKPRIS--QFIISVNKYMMAMKNGFSLGMRYRMRFEGEESPERIFTGTIIGSG 335
Query: 319 DLDPLRWKNSQWRNLQVGWDESTAGERPSRVSLWETEP 356
DL +W S+WR+LQ+ WDE ++ +RP++VS WE EP
Sbjct: 336 DLSS-QWPASKWRSLQIQWDEPSSIQRPNKVSPWEIEP 372
Score = 47 (21.6 bits), Expect = 1.7e-78, Sum P(2) = 1.7e-78
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 454 PSKLLNFQASALA-APNLQFSKANPQNQVNQLPQSPIA 490
P ++ F SAL P Q SK+ ++++ SP+A
Sbjct: 367 PWEIEPFSPSALTPTPTQQQSKSKRSRPISEITGSPVA 404
>TAIR|locus:2057609 [details] [associations]
symbol:ETT "ETTIN" species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009725 "response to hormone
stimulus" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS;TAS] [GO:0009850 "auxin
metabolic process" evidence=TAS] [GO:0010158 "abaxial cell fate
specification" evidence=IGI] [GO:0010050 "vegetative phase change"
evidence=IGI;RCA;IMP] [GO:0007389 "pattern specification process"
evidence=RCA] [GO:0009616 "virus induced gene silencing"
evidence=RCA] [GO:0009855 "determination of bilateral symmetry"
evidence=RCA] [GO:0009887 "organ morphogenesis" evidence=RCA]
[GO:0010051 "xylem and phloem pattern formation" evidence=RCA]
[GO:0048438 "floral whorl development" evidence=RCA] [GO:0048439
"flower morphogenesis" evidence=RCA] [GO:0048519 "negative
regulation of biological process" evidence=RCA] [GO:0009733
"response to auxin stimulus" evidence=ISS] InterPro:IPR003340
InterPro:IPR010525 Pfam:PF02362 Pfam:PF06507 PROSITE:PS50863
SMART:SM01019 GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0009733 GO:GO:0009734 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0009850 GO:GO:0010050 HOGENOM:HOG000241141
KO:K14486 EMBL:U89296 EMBL:AF007788 EMBL:U78721 EMBL:AF336917
EMBL:AF360313 EMBL:AY056365 EMBL:AB199791 IPI:IPI00527337
PIR:E84750 PIR:T03278 RefSeq:NP_180942.1 UniGene:At.10360
ProteinModelPortal:O23661 SMR:O23661 IntAct:O23661 STRING:O23661
EnsemblPlants:AT2G33860.1 GeneID:817956 KEGG:ath:AT2G33860
GeneFarm:3366 TAIR:At2g33860 eggNOG:NOG315820 InParanoid:O23661
OMA:HESNNES PhylomeDB:O23661 ProtClustDB:CLSN2913114
Genevestigator:O23661 GermOnline:AT2G33860 GO:GO:0010158
Uniprot:O23661
Length = 608
Score = 771 (276.5 bits), Expect = 1.5e-76, P = 1.5e-76
Identities = 162/344 (47%), Positives = 204/344 (59%)
Query: 23 ELWHACAXXXXXXXXXXXXXXYFPQGHSEQVAASMQKENDFIPNYPNLPSKLICMLHSVT 82
ELWHACA YFPQGH EQ DF LP + C + V
Sbjct: 54 ELWHACAGPLISLPKRGSLVLYFPQGHLEQAP-------DFSAAIYGLPPHVFCRILDVK 106
Query: 83 LHADPETDEVYAQMTLQP----VNKYEKEAILASDMG------LKQNRQPTEFFCKTLTA 132
LHA+ TDEVYAQ++L P + + +E I+ D G LK++ P FCKTLTA
Sbjct: 107 LHAETTTDEVYAQVSLLPESEDIERKVREGIIDVDGGEEDYEVLKRSNTP-HMFCKTLTA 165
Query: 133 SDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQPKRHLLT 192
SDTSTHGGFSVPRRAAE FPPLDYS P+QE++ARDLH W FRHIYRGQP+RHLLT
Sbjct: 166 SDTSTHGGFSVPRRAAEDCFPPLDYSQPRPSQELLARDLHGLEWRFRHIYRGQPRRHLLT 225
Query: 193 TGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALXXXXXXXXXMHIGILXXX 252
TGWS FV+ K+L +GD+VLF+R + +L LG+RRA++ + M+
Sbjct: 226 TGWSAFVNKKKLVSGDAVLFLRGDDGKLRLGVRRASQIEGTAALSAQYNQNMNHNNFSEV 285
Query: 253 XXXXXNNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMG 312
+S F+I YNP+AS S F+IP K+ K + +GMRF+ E+E++ RR G
Sbjct: 286 AHAISTHSVFSISYNPKASWSNFIIPAPKFLKVVDYPFCIGMRFKARVESEDASERRSPG 345
Query: 313 TITSISDLDPLRWKNSQWRNLQVGWDESTAGERPSRVSLWETEP 356
I+ ISDLDP+RW S+WR L V WD+ A RVS WE EP
Sbjct: 346 IISGISDLDPIRWPGSKWRCLLVRWDDIVANGHQQRVSPWEIEP 389
>TAIR|locus:2076765 [details] [associations]
symbol:ARF18 "auxin response factor 18" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0009725 "response
to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 EMBL:AL132959 HOGENOM:HOG000241141 EMBL:AF334717
EMBL:AY059746 EMBL:AY070463 EMBL:AY091392 EMBL:AK229945
IPI:IPI00524053 PIR:T47975 RefSeq:NP_567119.1 UniGene:At.17167
UniGene:At.69165 ProteinModelPortal:Q9C5W9 SMR:Q9C5W9 IntAct:Q9C5W9
EnsemblPlants:AT3G61830.1 GeneID:825356 KEGG:ath:AT3G61830
GeneFarm:3414 TAIR:At3g61830 eggNOG:NOG268528 InParanoid:Q9C5W9
OMA:RISQFIV PhylomeDB:Q9C5W9 ProtClustDB:CLSN2917487
Genevestigator:Q9C5W9 GermOnline:AT3G61830 Uniprot:Q9C5W9
Length = 602
Score = 753 (270.1 bits), Expect = 1.2e-74, P = 1.2e-74
Identities = 157/351 (44%), Positives = 206/351 (58%)
Query: 8 FLPSSAEGERKTINSELWHACAXXXXXXXXXXXXXXYFPQGHSEQVAASMQK--ENDFIP 65
F SS+ + + +ELW CA YFPQGH EQ+ AS + ++ IP
Sbjct: 10 FGSSSSRSYQDQLYTELWKVCAGPLVEVPRAQERVFYFPQGHMEQLVASTNQGINSEEIP 69
Query: 66 NYPNLPSKLICMLHSVTLHADPETDEVYAQMTLQPVNKYEKEAILASDMGLKQNRQPTEF 125
+ +LP K++C + VTL A+ ETDEVYAQ+TLQP + L + + +Q
Sbjct: 70 VF-DLPPKILCRVLDVTLKAEHETDEVYAQITLQPEEDQSEPTSLDPPI-VGPTKQEFHS 127
Query: 126 FCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQ 185
F K LTASDTSTHGGFSV R+ A + P LD + P QE+V RDLH W F+HI+RGQ
Sbjct: 128 FVKILTASDTSTHGGFSVLRKHATECLPSLDMTQATPTQELVTRDLHGFEWRFKHIFRGQ 187
Query: 186 PKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALXXXXXXXXXMH 245
P+RHLLTTGWS FVS+KRL AGD+ +F+R E L +G+RR R Q + MH
Sbjct: 188 PRRHLLTTGWSTFVSSKRLVAGDAFVFLRGENGDLRVGVRRLARHQSTMPTSVISSQSMH 247
Query: 246 IGILXXXXXXXXNNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEES 305
+G+L + F +FY PR S +F++ + KY +A+ SLG RFRM FE EES
Sbjct: 248 LGVLATASHAVRTTTIFVVFYKPRIS--QFIVGVNKYMEAIKHGFSLGTRFRMRFEGEES 305
Query: 306 GVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDESTAGERPSRVSLWETEP 356
R + GTI DL +W S+WR+LQV WDE T +RP +VS WE EP
Sbjct: 306 PERIFTGTIVGSGDLSS-QWPASKWRSLQVQWDEPTTVQRPDKVSPWEIEP 355
>TAIR|locus:2009298 [details] [associations]
symbol:ARF21 "auxin response factor 21" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 HOGENOM:HOG000241141 eggNOG:NOG264447
ProtClustDB:CLSN2681760 EMBL:AC023279 EMBL:AC023913 IPI:IPI00539451
PIR:E86468 RefSeq:NP_174701.2 UniGene:At.51930
ProteinModelPortal:Q9C8N9 SMR:Q9C8N9 EnsemblPlants:AT1G34410.1
GeneID:840344 KEGG:ath:AT1G34410 GeneFarm:3425 TAIR:At1g34410
PhylomeDB:Q9C8N9 Genevestigator:Q9C8N9 GermOnline:AT1G34410
Uniprot:Q9C8N9
Length = 606
Score = 665 (239.2 bits), Expect = 6.0e-71, Sum P(3) = 6.0e-71
Identities = 136/345 (39%), Positives = 197/345 (57%)
Query: 14 EGERKTINSELWHACAXXXXXXXXXXXXXXYFPQGHSEQVAASMQKENDFIPNYPNLPSK 73
+G + + +LW CA YFPQG+ E V AS ++E + + +LPSK
Sbjct: 18 DGSKSYMYEQLWKLCAGPLCDIPKLGENVYYFPQGNIELVQASTREELNELQPICDLPSK 77
Query: 74 LICMLHSVTLHADPETDEVYAQMTLQPVNKYEKEAILASDMGLKQNRQPTEFFCKTLTAS 133
L C + ++ L + +DE+YA++TL P + ++ + R F K LTAS
Sbjct: 78 LQCRVIAIHLKVENNSDEIYAEITLMP----DTTQVVIPTQSENRFRPLVNSFTKVLTAS 133
Query: 134 DTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQPKRHLLTT 193
DTS +GGFSVP++ A + PPLD S PAQEI+A DLHD W FRH YRG P+RH LTT
Sbjct: 134 DTSAYGGFSVPKKHAIECLPPLDMSQPLPAQEILAIDLHDNQWRFRHNYRGTPQRHSLTT 193
Query: 194 GWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALXXXXXXXXXMHIGILXXXX 253
GW+ F+++K+L GD ++F+R E +L +GIRRA QQ + M G++
Sbjct: 194 GWNEFITSKKLVKGDVIVFVRGETGELRVGIRRARHQQGNIPSSIVSIDCMRHGVIASAK 253
Query: 254 XXXXNNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGT 313
N F + Y PR+S +F++ K+ A+ + ++G RF M FE ++ RRY GT
Sbjct: 254 HAFDNQCIFIVVYKPRSS--QFIVSYDKFLDAVNNKFNVGSRFTMRFEGDDFSERRYFGT 311
Query: 314 ITSISDLDPLRWKNSQWRNLQVGWDESTAGERPSRVSLWETEPVV 358
I +SD P WK S+WR+L+V WDE + RP++VS WE E +V
Sbjct: 312 IIGVSDFSP-HWKCSEWRSLEVQWDEFASFSRPNKVSPWEIEHLV 355
Score = 47 (21.6 bits), Expect = 6.0e-71, Sum P(3) = 6.0e-71
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 855 ARIKHELPISKGPEHLKYNGSMTDQVE---ASSSGTSYCL 891
+R+ P+ P+ L YN M Q+E + +GT++ L
Sbjct: 421 SRLLMSYPVQPMPK-LNYNNQMVTQIEENITTKAGTNFRL 459
Score = 37 (18.1 bits), Expect = 6.0e-71, Sum P(3) = 6.0e-71
Identities = 12/59 (20%), Positives = 27/59 (45%)
Query: 412 PGLSLVQWMSMQQNNQFPAAQSGFFPSMVSSTGLHSNFGTDDPSKL-LNFQASALAAPN 469
P SL++ +++ N+F ++ S P +++ P + L ++ + AA N
Sbjct: 361 PRSSLLKNKRLREVNEFGSSSSHLLPPILTQGQEIGQLSVASPMNISLRYRDTTEAAMN 419
>TAIR|locus:2014731 [details] [associations]
symbol:ARF14 "auxin response factor 14" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 HOGENOM:HOG000241141 eggNOG:NOG264447
ProtClustDB:CLSN2681760 EMBL:AC007887 IPI:IPI00548517 PIR:G86476
RefSeq:NP_174786.1 UniGene:At.39556 ProteinModelPortal:Q9LQE8
SMR:Q9LQE8 IntAct:Q9LQE8 PRIDE:Q9LQE8 EnsemblPlants:AT1G35540.1
GeneID:840450 KEGG:ath:AT1G35540 GeneFarm:3394 TAIR:At1g35540
OMA:DITEDAM PhylomeDB:Q9LQE8 Genevestigator:Q9LQE8 Uniprot:Q9LQE8
Length = 605
Score = 650 (233.9 bits), Expect = 4.2e-67, Sum P(2) = 4.2e-67
Identities = 135/348 (38%), Positives = 192/348 (55%)
Query: 14 EGERKTINSELWHACAXXXXXXXXXXXXXXYFPQGHSEQVAASMQKENDFIPNYPNLPSK 73
+G + + +LW CA YFPQGH E V AS ++E + + + PSK
Sbjct: 18 DGSKSYMYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVEASTREELNELQPICDFPSK 77
Query: 74 LICMLHSVTLHADPETDEVYAQMTLQPVNKYEKEAILASDMGLKQNRQPTEFFCKTLTAS 133
L C + ++ L + +DE YA++TL P + ++ Q R F K LTAS
Sbjct: 78 LQCRVIAIQLKVENNSDETYAEITLMP----DTTQVVIPTQNQNQFRPLVNSFTKVLTAS 133
Query: 134 DTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQPKRHLLTT 193
DTS HGGFSVP++ A + PPLD S P QEI+A DLH W FRHIYRG +RHLLT
Sbjct: 134 DTSVHGGFSVPKKHAIECLPPLDMSQPLPTQEILAIDLHGNQWRFRHIYRGTAQRHLLTI 193
Query: 194 GWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALXXXXXXXXXMHIGILXXXX 253
GW+ F ++K+L GD ++F+R E +L +GIRRA QQ + M GI+
Sbjct: 194 GWNAFTTSKKLVEGDVIVFVRGETGELRVGIRRAGHQQGNIPSSIVSIESMRHGIIASAK 253
Query: 254 XXXXNNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGT 313
N F + Y PR+S +F++ K+ + + ++G RF M FE ++ RR GT
Sbjct: 254 HAFDNQCMFIVVYKPRSS--QFIVSYDKFLDVVNNKFNVGSRFTMRFEGDDFSERRSFGT 311
Query: 314 ITSISDLDPLRWKNSQWRNLQVGWDESTAGERPSRVSLWETEPVVTPF 361
I +SD P WK S+WR+L+V WDE + RP++VS W+ E + TP+
Sbjct: 312 IIGVSDFSP-HWKCSEWRSLEVQWDEFASFPRPNQVSPWDIEHL-TPW 357
Score = 50 (22.7 bits), Expect = 4.2e-67, Sum P(2) = 4.2e-67
Identities = 26/93 (27%), Positives = 41/93 (44%)
Query: 926 DGMAPDTLLSRGYDSQKDLHNLLSNYGGTPRDIETELSTAAISS-----QSFAVPNIPFK 980
D M P LL Y Q + L NY IE ++T A++S S A P++
Sbjct: 416 DAMTPSRLLM-SYPVQP-MAKL--NYNNVVTPIEENITTNAVASFRLFGVSLATPSVIKD 471
Query: 981 PACSNEVGINEAGVLGNGLWANQTQRMRTFTKV 1013
P ++G+ E L Q+Q +R+ T++
Sbjct: 472 PV--EQIGL-EISRLTQEKKFGQSQILRSPTEI 501
>TAIR|locus:2057517 [details] [associations]
symbol:ARF10 "auxin response factor 10" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;ISS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0035198 "miRNA binding" evidence=ISS] [GO:0007389 "pattern
specification process" evidence=IDA] [GO:0048829 "root cap
development" evidence=IGI;IMP] [GO:0051301 "cell division"
evidence=IGI] [GO:0009734 "auxin mediated signaling pathway"
evidence=IMP] [GO:0009738 "abscisic acid mediated signaling
pathway" evidence=IMP] [GO:0009743 "response to carbohydrate
stimulus" evidence=IMP] [GO:0010154 "fruit development"
evidence=IMP] [GO:0031540 "regulation of anthocyanin biosynthetic
process" evidence=IMP] [GO:0048366 "leaf development" evidence=IMP]
[GO:0048441 "petal development" evidence=IMP] [GO:0048442 "sepal
development" evidence=IMP] [GO:0048589 "developmental growth"
evidence=IMP] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009738
GO:GO:0009734 GO:GO:0051301 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0048829 GO:GO:0048589 GO:GO:0009743
GO:GO:0048441 GO:GO:0048442 GO:GO:0010154 GO:GO:0035198
GO:GO:0048366 GO:GO:0007389 EMBL:AF099735 EMBL:AC006283
EMBL:AF325073 EMBL:AF336919 EMBL:EU550097 EMBL:EU550098
EMBL:EU550099 EMBL:EU550100 EMBL:EU550101 EMBL:EU550102
EMBL:EU550103 EMBL:EU550104 EMBL:EU550105 EMBL:EU550106
EMBL:EU550107 EMBL:EU550108 EMBL:EU550109 EMBL:EU550110
EMBL:EU550111 EMBL:EU550112 EMBL:EU550113 EMBL:EU550114
EMBL:EU550115 EMBL:EU550116 EMBL:EU550117 EMBL:EU550118
EMBL:EU550119 EMBL:AK228534 IPI:IPI00530405 PIR:G84683
RefSeq:NP_180402.1 UniGene:At.13730 ProteinModelPortal:Q9SKN5
SMR:Q9SKN5 IntAct:Q9SKN5 STRING:Q9SKN5 PRIDE:Q9SKN5
EnsemblPlants:AT2G28350.1 GeneID:817382 KEGG:ath:AT2G28350
GeneFarm:3383 TAIR:At2g28350 eggNOG:NOG315592 InParanoid:Q9SKN5
OMA:ERESGRC PhylomeDB:Q9SKN5 ProtClustDB:CLSN2913131
ArrayExpress:Q9SKN5 Genevestigator:Q9SKN5 GermOnline:AT2G28350
GO:GO:0031540 Uniprot:Q9SKN5
Length = 693
Score = 502 (181.8 bits), Expect = 1.7e-66, Sum P(2) = 1.7e-66
Identities = 104/222 (46%), Positives = 136/222 (61%)
Query: 16 ERKTINSELWHACAXXXXXXXXXXXXXXYFPQGHSEQVAASMQKENDFIPNYPNLPSKLI 75
+ K+++ +LWHACA YF QGH+E A DF + P +P ++
Sbjct: 3 QEKSLDPQLWHACAGSMVQIPSLNSTVFYFAQGHTEHAHAPP----DF--HAPRVPPLIL 56
Query: 76 CMLHSVTLHADPETDEVYAQMTLQPV--NKY--EKEAILA----SDMGLKQNRQPTEFFC 127
C + SV AD ETDEV+A++TL P+ N E +A+L S G ++ F
Sbjct: 57 CRVVSVKFLADAETDEVFAKITLLPLPGNDLDLENDAVLGLTPPSSDGNGNGKEKPASFA 116
Query: 128 KTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQPK 187
KTLT SD + GGFSVPR AE IFP LDYS +PP Q ++A+D+H TW FRHIYRG P+
Sbjct: 117 KTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDIHGETWKFRHIYRGTPR 176
Query: 188 RHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANR 229
RHLLTTGWS FV+ K+L AGDS++F+R E L +GIRRA R
Sbjct: 177 RHLLTTGWSTFVNQKKLIAGDSIVFLRSESGDLCVGIRRAKR 218
Score = 216 (81.1 bits), Expect = 1.7e-66, Sum P(2) = 1.7e-66
Identities = 44/97 (45%), Positives = 57/97 (58%)
Query: 262 FTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESG-VRRYMGTITSISDL 320
F + Y PRAS EF + A AM + GMRF+M FETE+S + +MGT++++
Sbjct: 287 FEVVYYPRASTPEFCVKAADVRSAMRIRWCSGMRFKMAFETEDSSRISWFMGTVSAVQVA 346
Query: 321 DPLRWKNSQWRNLQVGWDESTAGERPSRVSLWETEPV 357
DP+RW NS WR LQV WDE + RVS W E V
Sbjct: 347 DPIRWPNSPWRLLQVAWDEPDLLQNVKRVSPWLVELV 383
Score = 46 (21.3 bits), Expect = 1.4e-48, Sum P(2) = 1.4e-48
Identities = 15/43 (34%), Positives = 17/43 (39%)
Query: 444 GLHSNFGTDDP----SKLLNFQASALAAPNLQFSKANPQNQVN 482
GL SN G+D+P S L S L K N N N
Sbjct: 220 GLGSNAGSDNPYPGFSGFLRDDESTTTTSKLMMMKRNGNNDGN 262
Score = 44 (20.5 bits), Expect = 2.2e-48, Sum P(2) = 2.2e-48
Identities = 24/85 (28%), Positives = 36/85 (42%)
Query: 382 DESDIENAFKRAMPWLGDDFGMKDATSSIFPGLSLVQWMSMQQNNQFPAAQSGFFPSMVS 441
DE D+ KR PWL + T + P S + + + Q +FP + F P +
Sbjct: 364 DEPDLLQNVKRVSPWLVE-LVSNMPTIHLSP-FSPRKKIRIPQPFEFPFHGTKF-P--IF 418
Query: 442 STGLHSNFGTDDPSKLLNFQASALA 466
S G +N G + L N +A A
Sbjct: 419 SPGFANNGGGESMCYLSNDNNNAPA 443
>TAIR|locus:2036288 [details] [associations]
symbol:ARF22 "auxin response factor 22" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 HOGENOM:HOG000241141 ProtClustDB:CLSN2681760
EMBL:AC023913 EMBL:AY669796 IPI:IPI00545778 PIR:C86468
RefSeq:NP_174699.2 UniGene:At.51186 ProteinModelPortal:Q9C8N7
SMR:Q9C8N7 IntAct:Q9C8N7 EnsemblPlants:AT1G34390.1 GeneID:840341
KEGG:ath:AT1G34390 GeneFarm:3426 TAIR:At1g34390 OMA:NITTNAN
PhylomeDB:Q9C8N7 Genevestigator:Q9C8N7 Uniprot:Q9C8N7
Length = 598
Score = 647 (232.8 bits), Expect = 1.8e-66, Sum P(2) = 1.8e-66
Identities = 134/342 (39%), Positives = 190/342 (55%)
Query: 14 EGERKTINSELWHACAXXXXXXXXXXXXXXYFPQGHSEQVAASMQKENDFIPNYPNLPSK 73
+G + + +LW CA YFPQG+ E V AS ++E + + +LPSK
Sbjct: 18 DGSKSYMYEQLWKLCAGPLCDIPKLGEKIYYFPQGNIELVEASTREELNELKPICDLPSK 77
Query: 74 LICMLHSVTLHADPETDEVYAQMTLQPVNKYEKEAILASDMGLKQNRQPTEFFCKTLTAS 133
L C + ++ L + +DE YA++TL P + ++ Q R F K LTAS
Sbjct: 78 LQCRVIAIQLKVENNSDETYAEITLMP----DTTQVVIPTQNENQFRPLVNSFTKVLTAS 133
Query: 134 DTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQPKRHLLTT 193
DTS GGF VP++ A + PPLD S P QE++A DLH W F H YRG P+RHLLTT
Sbjct: 134 DTS--GGFFVPKKHAIECLPPLDMSQPLPTQELLATDLHGNQWRFNHNYRGTPQRHLLTT 191
Query: 194 GWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALXXXXXXXXXMHIGILXXXX 253
GW+ F ++K+L AGD ++F+R E +L +GIRRA QQ + M G++
Sbjct: 192 GWNAFTTSKKLVAGDVIVFVRGETGELRVGIRRAGHQQGNIPSSIISIESMRHGVIASAK 251
Query: 254 XXXXNNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGT 313
N F + Y PR+S +F++ K+ A+ + ++G RF M FE ++ RRY GT
Sbjct: 252 HAFDNQCMFIVVYKPRSS--QFIVSYDKFLDAVNNKFNVGSRFTMRFEGDDFSERRYFGT 309
Query: 314 ITSISDLDPLRWKNSQWRNLQVGWDESTAGERPSRVSLWETE 355
I +SD P WK S+WRNL+V WDE + RP++VS WE E
Sbjct: 310 IIGVSDFSP-HWKCSEWRNLEVQWDEFASFSRPNKVSPWEIE 350
Score = 47 (21.6 bits), Expect = 1.8e-66, Sum P(2) = 1.8e-66
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 855 ARIKHELPISKGPEHLKYNGSMTDQVE---ASSSGTSYCL 891
+R+ P+ P+ L YN M Q+E + +GT++ L
Sbjct: 419 SRLLMSYPVQPMPK-LNYNNQMVTQIEENITTKTGTNFRL 457
>TAIR|locus:2206717 [details] [associations]
symbol:ARF20 "auxin response factor 20" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 EMBL:AC069160 HOGENOM:HOG000241141
eggNOG:NOG264447 ProtClustDB:CLSN2681760 EMBL:AY669795
IPI:IPI00656906 PIR:D86473 RefSeq:NP_174758.2 UniGene:At.51187
ProteinModelPortal:Q9C7I9 SMR:Q9C7I9 IntAct:Q9C7I9 PaxDb:Q9C7I9
PRIDE:Q9C7I9 EnsemblPlants:AT1G35240.1 GeneID:840413
KEGG:ath:AT1G35240 GeneFarm:3424 TAIR:At1g35240 PhylomeDB:Q9C7I9
Genevestigator:Q9C7I9 GermOnline:AT1G35240 Uniprot:Q9C7I9
Length = 590
Score = 628 (226.1 bits), Expect = 2.3e-64, Sum P(2) = 2.3e-64
Identities = 130/346 (37%), Positives = 190/346 (54%)
Query: 14 EGERKTINSELWHACAXXXXXXXXXXXXXXYFPQGHSEQVAASMQKENDFIPNYPNLPSK 73
+G + + +LW CA YFPQG+ E V AS ++E + + +LPSK
Sbjct: 18 DGSKSYMYEQLWKLCAGPLCDIPKLGENVYYFPQGNIELVDASTREELNELQPICDLPSK 77
Query: 74 LICMLHSVTLHADPETDEVYAQMTLQPVNKYEKEAILASDMGLKQNRQPTEFFCKTLTAS 133
L C + ++ L + +DE YA++TL P + ++ Q R F K LTAS
Sbjct: 78 LQCRVIAIHLKVENNSDETYAEITLMP----DTTQVVIPTQSENQFRPLVNSFTKVLTAS 133
Query: 134 DTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQPKRHLLTT 193
DTS +GGF VP++ A + PPL PAQE++A+DLH W FRH YRG P+RH LTT
Sbjct: 134 DTSAYGGFFVPKKHAIECLPPLPL----PAQELLAKDLHGNQWRFRHSYRGTPQRHSLTT 189
Query: 194 GWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALXXXXXXXXXMHIGILXXXX 253
GW+ F ++K+L GD ++F+R E +L +GIRRA QQ + M G++
Sbjct: 190 GWNEFTTSKKLVKGDVIVFVRGETGELRVGIRRARHQQGNIPSSIVSIDCMRHGVIASAK 249
Query: 254 XXXXNNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGT 313
N F + Y P S+F++ K+ AM + +G RF M FE ++ RRY GT
Sbjct: 250 HALDNQCIFIVVYKPSIRSSQFIVSYDKFLDAMNNKFIVGSRFTMRFEGDDFSERRYFGT 309
Query: 314 ITSISDLDPLRWKNSQWRNLQVGWDESTAGERPSRVSLWETEPVVT 359
I ++D P WK S+WR+L+V WDE + RP++VS WE E +++
Sbjct: 310 IIGVNDFSP-HWKCSEWRSLEVQWDEFASFSRPNKVSPWEIEHLMS 354
Score = 46 (21.3 bits), Expect = 2.3e-64, Sum P(2) = 2.3e-64
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 837 SVVEPSSNLVQELHSKSDA----RIKHELPISKGPEHLKYNGSMTDQVE 881
SV P + ++ + DA R+ P+ P+ L YN M Q+E
Sbjct: 383 SVASPMNTSLRYRDTTEDAMNPSRLLMSYPVQPMPK-LNYNNQMVTQIE 430
>TAIR|locus:2126460 [details] [associations]
symbol:ARF16 "auxin response factor 16" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA;IDA] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=IEA] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0035198 "miRNA binding" evidence=ISS] [GO:0007389 "pattern
specification process" evidence=IDA] [GO:0009733 "response to auxin
stimulus" evidence=IEP] [GO:0048829 "root cap development"
evidence=IGI;IMP] [GO:0051301 "cell division" evidence=IGI]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 GO:GO:0005634
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0009733 GO:GO:0009734
GO:GO:0051301 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
EMBL:AL161576 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0048829 GO:GO:0035198 GO:GO:0007389
HOGENOM:HOG000241141 eggNOG:NOG315592 EMBL:AL078464 EMBL:AY059792
EMBL:AY091198 EMBL:EU550120 EMBL:EU550121 EMBL:EU550122
EMBL:EU550123 EMBL:EU550124 EMBL:EU550125 EMBL:EU550126
EMBL:EU550127 EMBL:EU550128 EMBL:EU550129 EMBL:EU550130
EMBL:EU550131 EMBL:EU550132 EMBL:EU550133 EMBL:EU550134
EMBL:EU550135 EMBL:EU550136 EMBL:EU550137 EMBL:EU550138
EMBL:EU550139 EMBL:EU550140 EMBL:EU550141 EMBL:EU550142
EMBL:EU550143 IPI:IPI00528149 PIR:T08984 RefSeq:NP_567841.1
UniGene:At.3365 ProteinModelPortal:Q93YR9 SMR:Q93YR9 IntAct:Q93YR9
STRING:Q93YR9 EnsemblPlants:AT4G30080.1 GeneID:829131
KEGG:ath:AT4G30080 GeneFarm:3406 TAIR:At4g30080 InParanoid:Q93YR9
OMA:GHAENAY PhylomeDB:Q93YR9 ProtClustDB:CLSN2917636
Genevestigator:Q93YR9 GermOnline:AT4G30080 Uniprot:Q93YR9
Length = 670
Score = 480 (174.0 bits), Expect = 2.3e-63, Sum P(2) = 2.3e-63
Identities = 101/219 (46%), Positives = 135/219 (61%)
Query: 15 GERKTINSELWHACAXXXXXXXXXXXXXXYFPQGHSEQVAASMQKENDFIPNYPNLPSKL 74
G K ++ +LWHACA YFPQGH+E + DF N P +P +
Sbjct: 11 GTEKGLDPQLWHACAGGMVRMPPMNSKVFYFPQGHAENAYDCV----DF-GNLP-IPPMV 64
Query: 75 ICMLHSVTLHADPETDEVYAQMTLQPV--NKY-EKEAILASDM-GLKQNRQPTEFFCKTL 130
+C + ++ AD E+DEV+A++ L P+ ++Y + E D G + N + T F KTL
Sbjct: 65 LCRVLAIKYMADAESDEVFAKLRLIPLKDDEYVDHEYGDGEDSNGFESNSEKTPSFAKTL 124
Query: 131 TASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQPKRHL 190
T SD + GGFSVPR AE IFP LDY+ +PP Q I+A+D+H W FRHIYRG P+RHL
Sbjct: 125 TQSDANNGGGFSVPRYCAETIFPRLDYNAEPPVQTILAKDVHGDVWKFRHIYRGTPRRHL 184
Query: 191 LTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANR 229
LTTGWS FV+ K+L AGDS++F+R E L +GIRRA R
Sbjct: 185 LTTGWSNFVNQKKLVAGDSIVFMRAENGDLCVGIRRAKR 223
Score = 216 (81.1 bits), Expect = 2.3e-63, Sum P(2) = 2.3e-63
Identities = 44/98 (44%), Positives = 58/98 (59%)
Query: 261 PFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESG-VRRYMGTITSISD 319
PF + Y PRAS SEF + AM GMRF+M FETE+S + +MGT+++++
Sbjct: 288 PFEVVYYPRASTSEFCVKALDARAAMRIPWCSGMRFKMAFETEDSSRISWFMGTVSAVNV 347
Query: 320 LDPLRWKNSQWRNLQVGWDESTAGERPSRVSLWETEPV 357
DP+RW NS WR LQV WDE + RV+ W E V
Sbjct: 348 SDPIRWPNSPWRLLQVAWDEPDLLQNVKRVNPWLVELV 385
Score = 42 (19.8 bits), Expect = 4.6e-45, Sum P(2) = 4.6e-45
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 382 DESDIENAFKRAMPWL 397
DE D+ KR PWL
Sbjct: 366 DEPDLLQNVKRVNPWL 381
>TAIR|locus:2026145 [details] [associations]
symbol:ARF12 "auxin response factor 12" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0009725 "response
to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 HOGENOM:HOG000241141 EMBL:AY669792 EMBL:AC007454
IPI:IPI00544760 PIR:C86467 RefSeq:NP_174691.2 UniGene:At.51185
ProteinModelPortal:Q9XID4 SMR:Q9XID4 IntAct:Q9XID4
EnsemblPlants:AT1G34310.1 GeneID:840331 KEGG:ath:AT1G34310
GeneFarm:3390 TAIR:At1g34310 eggNOG:NOG264447 PhylomeDB:Q9XID4
ProtClustDB:CLSN2681760 ArrayExpress:Q9XID4 Genevestigator:Q9XID4
GermOnline:AT1G34310 Uniprot:Q9XID4
Length = 593
Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
Identities = 132/342 (38%), Positives = 188/342 (54%)
Query: 14 EGERKTINSELWHACAXXXXXXXXXXXXXXYFPQGHSEQVAASMQKENDFIPNYPNLPSK 73
+G + + +LW CA YFPQGH E V S ++E + + +LPSK
Sbjct: 18 DGSKSYVYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVETSTREELNELQPICDLPSK 77
Query: 74 LICMLHSVTLHADPETDEVYAQMTLQPVNKYEKEAILASDMGLKQNRQPTEFFCKTLTAS 133
L C + ++ L + +DE YA++TL P + ++ Q R F K LTAS
Sbjct: 78 LQCRVIAIHLKVENNSDETYAEITLMP----DTTQVVIPTQNENQFRPLVNSFTKVLTAS 133
Query: 134 DTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQPKRHLLTT 193
DTS HGGF VP++ A + P LD S PAQE++A DLH W F H YRG P+RHLLTT
Sbjct: 134 DTSAHGGFFVPKKHAIECLPSLDMSQPLPAQELLAIDLHGNQWRFNHNYRGTPQRHLLTT 193
Query: 194 GWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALXXXXXXXXXMHIGILXXXX 253
GW+ F ++K+L AGD ++F+R E +L +GIRRA QQ + M G++
Sbjct: 194 GWNAFTTSKKLVAGDVIVFVRGETGELRVGIRRARHQQGNIPSSIVSIDCMRHGVVASAK 253
Query: 254 XXXXNNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGT 313
N FT+ Y PR+S +F++ K+ A+ + ++G RF M E ++ RR GT
Sbjct: 254 HAFDNQCMFTVVYKPRSS--KFIVSYDKFLDAVNNKFNVGSRFTMRLEGDDFSERRCFGT 311
Query: 314 ITSISDLDPLRWKNSQWRNLQVGWDESTAGERPSRVSLWETE 355
I +SD P WK S+WR+L+V WDE T+ P +VS W+ E
Sbjct: 312 IIGVSDFSP-HWKCSEWRSLEVQWDEFTSFPGPKKVSPWDIE 352
>TAIR|locus:2008991 [details] [associations]
symbol:ARF13 "AUXIN RESPONSE FACTOR 13" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006863 "purine nucleobase transport" evidence=RCA]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GO:GO:0005634 GO:GO:0009734 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 IPI:IPI00938986 RefSeq:NP_001154393.1
UniGene:At.51184 ProteinModelPortal:F4HT52 SMR:F4HT52 PRIDE:F4HT52
EnsemblPlants:AT1G34170.3 GeneID:840316 KEGG:ath:AT1G34170
OMA:PEFCNMA ArrayExpress:F4HT52 Uniprot:F4HT52
Length = 546
Score = 434 (157.8 bits), Expect = 3.4e-56, Sum P(3) = 3.4e-56
Identities = 92/249 (36%), Positives = 129/249 (51%)
Query: 23 ELWHACAXXXXXXXXXXXXXXYFPQGHSEQVAASMQKENDFIPNYPNLPSKLICMLHSVT 82
+LW+ CA YFPQGH E + S + E D I +LPSKL C + ++
Sbjct: 25 KLWNICAGPLCVLPKPGEKVYYFPQGHIELIENSTRDELDHIRPIFDLPSKLRCRVVAID 84
Query: 83 LHADPETDEVYAQMTLQPVNKYEKEAILASDMGLKQNRQPTEFFCKTLTASDTSTHGGFS 142
D TDEVYAQ++L P + ++ + + R FF K LTASD S GG
Sbjct: 85 RKVDKNTDEVYAQISLMP----DTTEVMTHNTTMDTRRPIVYFFSKILTASDVSLSGGLI 140
Query: 143 VPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQPKRHLLTTG--WSVFVS 200
+P++ A + FPPLD S Q +VA+DL+ W+F+H++RG P+RH+ T+G WSVF +
Sbjct: 141 IPKQYAIECFPPLDMSQPISTQNLVAKDLYGQEWSFKHVFRGTPQRHMFTSGGGWSVFAT 200
Query: 201 TKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALXXXXXXXXXMHIGILXXXXXXXXNNS 260
TKRL GD + +R E +L GIRRA QQ + M G++
Sbjct: 201 TKRLIVGDIFVLLRGENGELRFGIRRAKHQQGHIPSSVISANCMQHGVIASVVNAFKTKC 260
Query: 261 PFTIFYNPR 269
F + Y PR
Sbjct: 261 MFNVVYKPR 269
Score = 152 (58.6 bits), Expect = 3.4e-56, Sum P(3) = 3.4e-56
Identities = 27/62 (43%), Positives = 43/62 (69%)
Query: 297 RMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDESTAGERPSRVSLWETEP 356
RM FE ++ +RY GTI ++D+ P WK+S+WR+L+V WDE + RP++VS W+ E
Sbjct: 269 RMQFEGKDFSEKRYDGTIIGVNDMSP-HWKDSEWRSLKVQWDELSPFLRPNQVSPWDIEH 327
Query: 357 VV 358
++
Sbjct: 328 LI 329
Score = 40 (19.1 bits), Expect = 3.4e-56, Sum P(3) = 3.4e-56
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 826 NQQGPAMLMGDSVVEPSSNLVQELHSKSDARIK 858
N +G ML+GD N+ + + S IK
Sbjct: 486 NNEGAEMLVGDDPWPEFCNMAKRIFICSKEEIK 518
>TAIR|locus:2029436 [details] [associations]
symbol:ARF17 "auxin response factor 17" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0009653 "anatomical structure morphogenesis"
evidence=IMP] [GO:0009734 "auxin mediated signaling pathway"
evidence=TAS] [GO:0048830 "adventitious root development"
evidence=IMP] [GO:0009555 "pollen development" evidence=IMP]
InterPro:IPR003340 InterPro:IPR010525 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0009555
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 GO:GO:0048830 GO:GO:0009653
EMBL:AC009243 EMBL:AC012193 EMBL:AY056184 EMBL:BT002749
EMBL:EU550144 EMBL:EU550145 EMBL:EU550146 EMBL:EU550147
EMBL:EU550148 EMBL:EU550149 EMBL:EU550150 EMBL:EU550151
EMBL:EU550152 EMBL:EU550153 EMBL:EU550154 EMBL:EU550155
EMBL:EU550156 EMBL:EU550157 EMBL:EU550158 EMBL:EU550159
EMBL:EU550160 EMBL:EU550161 EMBL:EU550162 EMBL:EU550163
EMBL:EU550164 EMBL:EU550165 EMBL:EU550166 EMBL:EU550167
IPI:IPI00522722 PIR:D96808 RefSeq:NP_565161.1 UniGene:At.26363
ProteinModelPortal:Q84WU6 SMR:Q84WU6 IntAct:Q84WU6 STRING:Q84WU6
PRIDE:Q84WU6 EnsemblPlants:AT1G77850.1 GeneID:844120
KEGG:ath:AT1G77850 GeneFarm:3413 TAIR:At1g77850 eggNOG:NOG325741
OMA:IWRACAG PhylomeDB:Q84WU6 ProtClustDB:CLSN2689276
Genevestigator:Q84WU6 GermOnline:AT1G77850 Uniprot:Q84WU6
Length = 585
Score = 430 (156.4 bits), Expect = 2.6e-54, Sum P(3) = 2.6e-54
Identities = 88/224 (39%), Positives = 126/224 (56%)
Query: 10 PSSAEGE--RKTINSELWHACAXXXXXXXXXXXXXXYFPQGHSEQVAASMQKENDFIPNY 67
PS+ G+ + ++ +W ACA YFPQGH E +
Sbjct: 4 PSATAGDINHREVDPTIWRACAGASVQIPVLHSRVYYFPQGHVEHCCP-------LLSTL 56
Query: 68 PNLPSKLICMLHSVTLHADPETDEVYAQMTLQPVNKYEKEAILASDMG-----LKQNRQP 122
P+ S + C++ S+ L ADP TDEV+A + LQP+ + + S G + N +
Sbjct: 57 PSSTSPVPCIITSIQLLADPVTDEVFAHLILQPMTQQQFTPTNYSRFGRFDGDVDDNNKV 116
Query: 123 TEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIY 182
T F K LT SD + GGFSVPR A+ +FP L++ + PP Q++ D+H W FRHIY
Sbjct: 117 TTF-AKILTPSDANNGGGFSVPRFCADSVFPLLNFQIDPPVQKLYVTDIHGAVWDFRHIY 175
Query: 183 RGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRR 226
RG P+RHLLTTGWS FV++K+L AGDSV+F+R ++ +G+RR
Sbjct: 176 RGTPRRHLLTTGWSKFVNSKKLIAGDSVVFMRKSADEMFIGVRR 219
Score = 141 (54.7 bits), Expect = 2.6e-54, Sum P(3) = 2.6e-54
Identities = 31/97 (31%), Positives = 49/97 (50%)
Query: 261 PFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESG-VRRYMGTITSI-S 318
PF + + P A SEFV+ +M + G R +M ETE+S + + G ++S
Sbjct: 283 PFEVVFYPAAGWSEFVVRAEDVESSMSMYWTPGTRVKMAMETEDSSRITWFQGIVSSTYQ 342
Query: 319 DLDPLRWKNSQWRNLQVGWDESTAGERPSRVSLWETE 355
+ P W+ S W+ LQ+ WDE + RV+ W+ E
Sbjct: 343 ETGP--WRGSPWKQLQITWDEPEILQNVKRVNPWQVE 377
Score = 46 (21.3 bits), Expect = 2.6e-54, Sum P(3) = 2.6e-54
Identities = 25/108 (23%), Positives = 37/108 (34%)
Query: 382 DESDIENAFKRAMPWLGDDFGMKDATSSIFPGLSLVQWMSMQQNNQFPAAQSGFFPSMVS 441
DE +I KR PW + + FP +++ Q F + G +
Sbjct: 360 DEPEILQNVKRVNPWQVEIAAHATQLHTPFPPAKRLKYP--QPGGGFLSGDDGEI--LYP 415
Query: 442 STGLHSNFGTDDPSKLL----NFQASALAAPNLQFSKANPQNQVNQLP 485
+GL S+ DPS + F A A F NP + P
Sbjct: 416 QSGL-SSAAAPDPSPSMFSYSTFPAGMQGARQYDFGSFNPTGFIGGNP 462
>TAIR|locus:2037169 [details] [associations]
symbol:ARF23 "auxin response factor 23" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863
SMART:SM01019 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0009734 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
HOGENOM:HOG000241141 EMBL:AC022314 IPI:IPI00526589 PIR:E96503
RefSeq:NP_175062.1 UniGene:At.52022 ProteinModelPortal:Q9LP07
SMR:Q9LP07 EnsemblPlants:AT1G43950.1 GeneID:840994
KEGG:ath:AT1G43950 GeneFarm:3427 TAIR:At1g43950 OMA:PTENENQ
PhylomeDB:Q9LP07 Genevestigator:Q9LP07 GermOnline:AT1G43950
Uniprot:Q9LP07
Length = 222
Score = 369 (135.0 bits), Expect = 4.0e-33, P = 4.0e-33
Identities = 84/213 (39%), Positives = 118/213 (55%)
Query: 14 EGERKTINSELWHACAXXXXXXXXXXXXXXYFPQGHSEQVAASMQKE-NDFIPNYPNLPS 72
+G + + +LW CA YFPQGH E V AS ++E N+ PN +LPS
Sbjct: 18 DGSKSYMYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVEASTREELNELQPNC-DLPS 76
Query: 73 KLICMLHSVTLHADPETDEVYAQMTLQPVNKYEKEAILASDMGLKQNRQPTEFFCKTLTA 132
KL C + ++ L + +DE Y ++TL P + ++ ++ Q R F K LTA
Sbjct: 77 KLQCRVIAIHLKVENNSDETYVEITLMPDTT---QVVIPTE-NENQFRPIVNSFTKVLTA 132
Query: 133 SDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQPKRHLLT 192
SDTS G FSVP + A + PPLD S PAQE++A DLH W F+H YR P+ T
Sbjct: 133 SDTSAQGEFSVPCKHAIECLPPLDMSQPIPAQELIAIDLHGNQWRFKHSYR-VPRGD--T 189
Query: 193 TGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIR 225
TGW+ F ++K+L GD ++F R E +L +GIR
Sbjct: 190 TGWNAFTTSKKLVVGDVIVFARGETGELRVGIR 222
>TAIR|locus:2041404 [details] [associations]
symbol:NGA1 "NGATHA1" species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009908
"flower development" evidence=IMP] [GO:0048366 "leaf development"
evidence=IMP] InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863
SMART:SM01019 GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AC004411
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
GO:GO:0009908 GO:GO:0048366 EMBL:AC005310 HSSP:Q9ZWM9 EMBL:AK118045
EMBL:BT008534 IPI:IPI00537675 PIR:T02200 RefSeq:NP_566089.1
UniGene:At.36441 ProteinModelPortal:O82799 SMR:O82799 IntAct:O82799
STRING:O82799 EnsemblPlants:AT2G46870.1 GeneID:819300
KEGG:ath:AT2G46870 TAIR:At2g46870 eggNOG:NOG237610
HOGENOM:HOG000239355 InParanoid:O82799 OMA:MECGESG PhylomeDB:O82799
ProtClustDB:CLSN2682823 Genevestigator:O82799 Uniprot:O82799
Length = 310
Score = 154 (59.3 bits), Expect = 5.6e-08, P = 5.6e-08
Identities = 39/111 (35%), Positives = 56/111 (50%)
Query: 105 EKEAI-LASDMGLKQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPA 163
E+EA LA + G ++ F K +T SD +P++ AE+ FP LD S
Sbjct: 13 EEEAKPLAEEEGAREVADREHMFDKVVTPSDVGKLNRLVIPKQHAERFFP-LDSSSNEKG 71
Query: 164 QEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIR 214
+ DL +W FR+ Y + +++T GWS FV K+L AGD V F R
Sbjct: 72 LLLNFEDLTGKSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQR 122
>TAIR|locus:2085969 [details] [associations]
symbol:EDF3 "ethylene response DNA binding factor 3"
species:3702 "Arabidopsis thaliana" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0009691 "cytokinin biosynthetic
process" evidence=RCA] InterPro:IPR001471 InterPro:IPR003340
InterPro:IPR016177 Pfam:PF00847 Pfam:PF02362 PROSITE:PS50863
PROSITE:PS51032 SMART:SM00380 SMART:SM01019 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009873 EMBL:AB028607
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 Gene3D:3.30.730.10
SUPFAM:SSF54171 HSSP:Q9ZWM9 eggNOG:NOG266118 HOGENOM:HOG000237484
KO:K09287 ProtClustDB:CLSN2682511 EMBL:AJ441073 EMBL:AK229415
EMBL:AY087951 IPI:IPI00523797 RefSeq:NP_189201.1 UniGene:At.37331
ProteinModelPortal:Q9LS06 SMR:Q9LS06 EnsemblPlants:AT3G25730.1
GeneID:822164 KEGG:ath:AT3G25730 TAIR:At3g25730 InParanoid:Q9LS06
OMA:NAHSKSE Genevestigator:Q9LS06 Uniprot:Q9LS06
Length = 333
Score = 149 (57.5 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 41/127 (32%), Positives = 61/127 (48%)
Query: 102 NKYEKEAILASDMGLKQNRQPTEF-FCKTLTASDTSTHGGFSVPRRAAEKIFP-PL-DYS 158
N E A + M + + E F KT+T SD +P+ AEK FP PL + +
Sbjct: 158 NGKETTAFALASMVVMTGFKTAELLFEKTVTPSDVGKLNRLVIPKHQAEKHFPLPLGNNN 217
Query: 159 MQPPAQEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIR--DE 216
+ + D++ W FR+ Y + ++LT GWS FV KRL AGD + F R D+
Sbjct: 218 VSVKGMLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKRLCAGDLISFKRSNDQ 277
Query: 217 KSQLLLG 223
+ +G
Sbjct: 278 DQKFFIG 284
>TAIR|locus:2079537 [details] [associations]
symbol:NGA2 "NGATHA2" species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009908
"flower development" evidence=IMP] [GO:0048366 "leaf development"
evidence=IMP] InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863
SMART:SM01019 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 GO:GO:0009908 GO:GO:0048366
EMBL:AL138642 HSSP:Q9ZWM9 HOGENOM:HOG000239355
ProtClustDB:CLSN2682823 EMBL:AK117646 EMBL:BT025866 EMBL:AY085197
IPI:IPI00523321 PIR:T47989 RefSeq:NP_191756.1 UniGene:At.34201
ProteinModelPortal:Q9M268 SMR:Q9M268 EnsemblPlants:AT3G61970.1
GeneID:825370 KEGG:ath:AT3G61970 TAIR:At3g61970 eggNOG:NOG273145
InParanoid:Q9M268 OMA:SSSMERE PhylomeDB:Q9M268
Genevestigator:Q9M268 Uniprot:Q9M268
Length = 299
Score = 144 (55.7 bits), Expect = 6.7e-07, P = 6.7e-07
Identities = 41/131 (31%), Positives = 65/131 (49%)
Query: 101 VNKYEKEAILASDMGLKQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQ 160
+N+ +KE + + R+ F K +T SD +P++ AE+ FP LD S
Sbjct: 1 MNQEDKEKPI-EEASSSMERE--HMFDKVVTPSDVGKLNRLVIPKQHAERYFP-LDNSTT 56
Query: 161 PPAQEIVARDLHD---TTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDE- 216
+ + + + D +W FR+ Y + +++T GWS FV K+L AGD V F RD
Sbjct: 57 NDSNKGLLLNFEDRSGNSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRDSC 116
Query: 217 -KSQLLLGIRR 226
K +L + RR
Sbjct: 117 NKDKLYIDWRR 127
>TAIR|locus:2117007 [details] [associations]
symbol:NGA4 "NGATHA4" species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009908
"flower development" evidence=IMP] [GO:0048366 "leaf development"
evidence=IMP] InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863
SMART:SM01019 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 GO:GO:0009908 GO:GO:0048366
EMBL:AF096370 EMBL:AL161492 HSSP:Q9ZWM9 HOGENOM:HOG000239355
EMBL:FJ873734 EMBL:BT029520 EMBL:AB493670 IPI:IPI00543194
PIR:T01944 RefSeq:NP_192059.4 UniGene:At.34418
ProteinModelPortal:O82595 SMR:O82595 STRING:O82595 PRIDE:O82595
EnsemblPlants:AT4G01500.1 GeneID:826750 KEGG:ath:AT4G01500
TAIR:At4g01500 eggNOG:NOG287578 InParanoid:O82595 OMA:YSSERRE
Genevestigator:O82595 Uniprot:O82595
Length = 333
Score = 141 (54.7 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 32/89 (35%), Positives = 47/89 (52%)
Query: 126 FCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQ 185
F K LT SD +P++ AE FP L+ + + +D + W FR+ Y
Sbjct: 36 FDKVLTPSDVGKLNRLVIPKQHAENFFP-LEDNQNGTVLDF--QDKNGKMWRFRYSYWNS 92
Query: 186 PKRHLLTTGWSVFVSTKRLFAGDSVLFIR 214
+ +++T GWS FV K+LFAGD+V F R
Sbjct: 93 SQSYVMTKGWSRFVKEKKLFAGDTVSFYR 121
>TAIR|locus:2012438 [details] [associations]
symbol:RAV2 "related to ABI3/VP1 2" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;TAS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0010167 "response to nitrate"
evidence=RCA] [GO:0010200 "response to chitin" evidence=RCA]
[GO:0015706 "nitrate transport" evidence=RCA] InterPro:IPR001471
InterPro:IPR003340 InterPro:IPR016177 Pfam:PF00847 Pfam:PF02362
PROSITE:PS50863 PROSITE:PS51032 SMART:SM00380 SMART:SM01019
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0045892
GO:GO:0009873 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
Gene3D:3.30.730.10 SUPFAM:SSF54171 EMBL:AC011914 EMBL:AC011665
HSSP:Q9ZWM9 eggNOG:NOG266118 HOGENOM:HOG000237484 KO:K09287
ProtClustDB:CLSN2682511 EMBL:AB013887 EMBL:AF360312 EMBL:AY056361
EMBL:AY085908 EMBL:AF003101 IPI:IPI00548727 PIR:T51330
RefSeq:NP_001185352.1 RefSeq:NP_564947.1 UniGene:At.25344
ProteinModelPortal:P82280 SMR:P82280 DIP:DIP-59694N STRING:P82280
PaxDb:P82280 PRIDE:P82280 EnsemblPlants:AT1G68840.1
EnsemblPlants:AT1G68840.2 GeneID:843216 KEGG:ath:AT1G68840
TAIR:At1g68840 InParanoid:P82280 OMA:MDSSCID PhylomeDB:P82280
Genevestigator:P82280 Uniprot:P82280
Length = 352
Score = 141 (54.7 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 59/202 (29%), Positives = 83/202 (41%)
Query: 50 SEQVAASMQKENDFIPNYPN-LPSKLICML--HSVTLHADPETDEVYAQMTLQPVNKYEK 106
S +AA + D + N+ N L + L HS D YA L+ NK +
Sbjct: 101 SYDIAACRFRGRDAVVNFKNVLEDGDLAFLEAHSKAEIVDMLRKHTYAD-ELEQNNK--R 157
Query: 107 EAILASDMGLKQNRQPTE-----------FFCKTLTASDTSTHGGFSVPRRAAEKIFP-P 154
+ L+ D K+N T F K +T SD +P++ AEK FP P
Sbjct: 158 QLFLSVDANGKRNGSSTTQNDKVLKTREVLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLP 217
Query: 155 LDYSMQPPAQEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIR 214
I D++ W FR+ Y + ++LT GWS FV K L AGD V F R
Sbjct: 218 SPSPAVTKGVLINFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVTFER 277
Query: 215 DE--KSQLLLG--IRRANRQQP 232
+ QL + +R R+ P
Sbjct: 278 STGLERQLYIDWKVRSGPRENP 299
>TAIR|locus:2205319 [details] [associations]
symbol:RAV1 "related to ABI3/VP1 1" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;ISS;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0009741 "response to
brassinosteroid stimulus" evidence=IEP] [GO:0009910 "negative
regulation of flower development" evidence=IMP] [GO:0048366 "leaf
development" evidence=IMP] [GO:0048527 "lateral root development"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0006612 "protein targeting to
membrane" evidence=RCA] [GO:0009963 "positive regulation of
flavonoid biosynthetic process" evidence=RCA] [GO:0010363
"regulation of plant-type hypersensitive response" evidence=RCA]
InterPro:IPR001471 InterPro:IPR003340 InterPro:IPR016177
Pfam:PF00847 Pfam:PF02362 PROSITE:PS50863 PROSITE:PS51032
SMART:SM00380 SMART:SM01019 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005634 GO:GO:0045892 EMBL:AC011810 GO:GO:0009873
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0048527
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
Gene3D:3.30.730.10 SUPFAM:SSF54171 GO:GO:0009910 GO:GO:0048366
GO:GO:0009741 EMBL:AB013886 EMBL:AY063855 EMBL:AY091291
IPI:IPI00544013 PIR:T51329 RefSeq:NP_172784.1 UniGene:At.20558
PDB:1WID PDBsum:1WID ProteinModelPortal:Q9ZWM9 SMR:Q9ZWM9
STRING:Q9ZWM9 EnsemblPlants:AT1G13260.1 GeneID:837886
KEGG:ath:AT1G13260 TAIR:At1g13260 eggNOG:NOG266118
HOGENOM:HOG000237484 InParanoid:Q9ZWM9 KO:K09287 OMA:ICETPAI
PhylomeDB:Q9ZWM9 ProtClustDB:CLSN2682511 EvolutionaryTrace:Q9ZWM9
Genevestigator:Q9ZWM9 GermOnline:AT1G13260 Uniprot:Q9ZWM9
Length = 344
Score = 138 (53.6 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 35/106 (33%), Positives = 49/106 (46%)
Query: 120 RQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFR 179
R F K +T SD +P+ AEK FP ++ + D++ W FR
Sbjct: 182 RSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFR 241
Query: 180 HIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRD--EKSQLLLG 223
+ Y + ++LT GWS FV K L AGD V F R + QL +G
Sbjct: 242 YSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIG 287
>TAIR|locus:2031185 [details] [associations]
symbol:TEM1 "TEMPRANILLO 1" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=IEA;NAS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0009873 "ethylene mediated signaling pathway" evidence=NAS]
[GO:0048573 "photoperiodism, flowering" evidence=IMP] [GO:0030003
"cellular cation homeostasis" evidence=RCA] [GO:0070838 "divalent
metal ion transport" evidence=RCA] InterPro:IPR001471
InterPro:IPR003340 InterPro:IPR016177 Pfam:PF00847 Pfam:PF02362
PROSITE:PS50863 PROSITE:PS51032 SMART:SM00380 SMART:SM01019
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 EMBL:AC079281
GO:GO:0009873 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
Gene3D:3.30.730.10 SUPFAM:SSF54171 GO:GO:0048573 HSSP:Q9ZWM9
HOGENOM:HOG000237484 KO:K09287 ProtClustDB:CLSN2682511
EMBL:AY091069 EMBL:AY122941 IPI:IPI00518546 PIR:A86386
RefSeq:NP_173927.1 UniGene:At.17318 ProteinModelPortal:Q9C6M5
SMR:Q9C6M5 DIP:DIP-59693N PaxDb:Q9C6M5 PRIDE:Q9C6M5
EnsemblPlants:AT1G25560.1 GeneID:839143 KEGG:ath:AT1G25560
TAIR:At1g25560 eggNOG:NOG250438 InParanoid:Q9C6M5 OMA:NDVAVEC
PhylomeDB:Q9C6M5 Genevestigator:Q9C6M5 Uniprot:Q9C6M5
Length = 361
Score = 138 (53.6 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 42/114 (36%), Positives = 52/114 (45%)
Query: 126 FCKTLTASDTSTHGGFSVPRRAAEKIFP-PL---DYSMQPPAQEIVARDLHDTT---WTF 178
F KT+T SD +P++ AEK FP P M P + V +L D T W F
Sbjct: 195 FEKTVTPSDVGKLNRLVIPKQHAEKHFPLPAMTTAMGMNPSPTKGVLINLEDRTGKVWRF 254
Query: 179 RHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQP 232
R+ Y + ++LT GWS FV K L AGD V F R L I R P
Sbjct: 255 RYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVCFERSTGPDRQLYIHWKVRSSP 308
>TAIR|locus:2200950 [details] [associations]
symbol:NGA3 "NGATHA3" species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009908
"flower development" evidence=IMP] [GO:0048366 "leaf development"
evidence=IMP] InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863
SMART:SM01019 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 GO:GO:0009908 GO:GO:0048366
HSSP:Q9ZWM9 EMBL:AC007323 eggNOG:NOG237610 HOGENOM:HOG000239355
EMBL:BX814729 IPI:IPI00536920 PIR:B86141 RefSeq:NP_171611.1
UniGene:At.49492 ProteinModelPortal:Q9MAN1 SMR:Q9MAN1 STRING:Q9MAN1
PRIDE:Q9MAN1 EnsemblPlants:AT1G01030.1 GeneID:839321
KEGG:ath:AT1G01030 TAIR:At1g01030 InParanoid:Q9MAN1 OMA:RNIVGSE
PhylomeDB:Q9MAN1 ProtClustDB:CLSN2912766 Genevestigator:Q9MAN1
Uniprot:Q9MAN1
Length = 358
Score = 137 (53.3 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 38/112 (33%), Positives = 55/112 (49%)
Query: 126 FCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQ 185
F K +T SD +P++ AE+ FP LD S + +D + W FR+ Y
Sbjct: 56 FDKVVTPSDVGKLNRLVIPKQHAERYFP-LDSSNNQNGTLLNFQDRNGKMWRFRYSYWNS 114
Query: 186 PKRHLLTTGWSVFVSTKRLFAGDSVLFIR---DEKSQLLLGIRRANRQQPAL 234
+ +++T GWS FV K+L AGD V F R DE + L I +R +L
Sbjct: 115 SQSYVMTKGWSRFVKEKKLDAGDIVSFQRGIGDESERSKLYIDWRHRPDMSL 166
>TAIR|locus:2039165 [details] [associations]
symbol:ABS2 "ABNORMAL SHOOT 2" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0080167 "response to karrikin" evidence=IEP] [GO:0009062 "fatty
acid catabolic process" evidence=RCA] InterPro:IPR003340
Pfam:PF02362 PROSITE:PS50863 SMART:SM01019 GO:GO:0005634
GO:GO:0045892 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0080167 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 EMBL:AC007017 EMBL:AC007135
HSSP:Q9ZWM9 HOGENOM:HOG000239355 EMBL:AK117587 EMBL:AJ441075
IPI:IPI00522172 IPI:IPI00531123 PIR:F84776 RefSeq:NP_181152.2
RefSeq:NP_850260.1 UniGene:At.23308 ProteinModelPortal:Q8GYJ2
SMR:Q8GYJ2 PaxDb:Q8GYJ2 EnsemblPlants:AT2G36080.1 GeneID:818181
KEGG:ath:AT2G36080 TAIR:At2g36080 eggNOG:NOG253490
InParanoid:Q8GYJ2 OMA:AQAVESQ PhylomeDB:Q8GYJ2
ProtClustDB:CLSN2680069 Genevestigator:Q8GYJ2 Uniprot:Q8GYJ2
Length = 244
Score = 128 (50.1 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 34/105 (32%), Positives = 50/105 (47%)
Query: 126 FCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVA--RDLHDTTWTFRHIYR 183
F K LT SD +P++ AE+ FP + + ++ D W FR+ Y
Sbjct: 38 FEKPLTPSDVGKLNRLVIPKQHAERYFPLAAAAADAVEKGLLLCFEDEEGKPWRFRYSYW 97
Query: 184 GQPKRHLLTTGWSVFVSTKRLFAGDSVLFIR--DEKSQLLLGIRR 226
+ ++LT GWS +V K L AGD VLF R + + +G RR
Sbjct: 98 NSSQSYVLTKGWSRYVKEKHLDAGDVVLFHRHRSDGGRFFIGWRR 142
>TAIR|locus:2164215 [details] [associations]
symbol:DPA4 "DEVELOPMENT-RELATED PcG TARGET IN THE APEX
4" species:3702 "Arabidopsis thaliana" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0009062 "fatty acid catabolic
process" evidence=RCA] [GO:0010073 "meristem maintenance"
evidence=IMP] [GO:0010358 "leaf shaping" evidence=IGI] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IMP]
[GO:0048366 "leaf development" evidence=IGI] InterPro:IPR003340
Pfam:PF02362 PROSITE:PS50863 SMART:SM01019 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0045892 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0010073 EMBL:AB006700 GO:GO:0010358
HSSP:Q9ZWM9 HOGENOM:HOG000239355 IPI:IPI00517655 IPI:IPI00891280
RefSeq:NP_001119177.1 RefSeq:NP_196243.2 UniGene:At.54745
ProteinModelPortal:Q9FNI3 SMR:Q9FNI3 EnsemblPlants:AT5G06250.2
GeneID:830512 KEGG:ath:AT5G06250 TAIR:At5g06250 eggNOG:NOG256843
InParanoid:Q9FNI3 OMA:LECQMDE PhylomeDB:Q9FNI3
ProtClustDB:CLSN2702250 Genevestigator:Q9FNI3 Uniprot:Q9FNI3
Length = 282
Score = 129 (50.5 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 37/112 (33%), Positives = 51/112 (45%)
Query: 126 FCKTLTASDTSTHGGFSVPRRAAEKIFP---------PLDYSMQPPAQEIVARDLHDTTW 176
F K+LT SD +P++ AEK FP D S + D +W
Sbjct: 46 FEKSLTPSDVGKLNRLVIPKQHAEKYFPLNAVLVSSAAADTSSSEKGMLLSFEDESGKSW 105
Query: 177 TFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIR--DEKSQLLLGIRR 226
FR+ Y + ++LT GWS FV K+L GD V F R + +L +G RR
Sbjct: 106 RFRYSYWNSSQSYVLTKGWSRFVKDKQLDPGDVVFFQRHRSDSRRLFIGWRR 157
>DICTYBASE|DDB_G0285837 [details] [associations]
symbol:DDB_G0285837 "BRWD group protein"
species:44689 "Dictyostelium discoideum" [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR017986 InterPro:IPR001487 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 Pfam:PF00439 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00297
SMART:SM00320 dictyBase:DDB_G0285837 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775 eggNOG:COG2319
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
EMBL:AAFI02000080 HSSP:Q03330 RefSeq:XP_638029.1
ProteinModelPortal:Q54MP8 EnsemblProtists:DDB0220685 GeneID:8625294
KEGG:ddi:DDB_G0285837 InParanoid:Q54MP8 OMA:DEITDIY Uniprot:Q54MP8
Length = 2200
Score = 137 (53.3 bits), Expect = 9.8e-05, Sum P(2) = 9.8e-05
Identities = 35/95 (36%), Positives = 54/95 (56%)
Query: 262 FTIFYNPRASPSEFVIPLAKYNKAMYTQVSL-GMRFRMMFETEESGVRRYMGTITSISDL 320
+T+ Y+ P ++++ +K K+M T ++ RFRM + SG Y GTI ISD
Sbjct: 1350 YTVIYHVSDIP-DYLVLASKVRKSMLTDWTVPNKRFRMFYPA--SGW--YNGTIIEISDS 1404
Query: 321 DPLRWKNSQWRNLQVGWDESTAGERPSRVSLWETE 355
DPL + NS W N++V WD++ E RV+ WE +
Sbjct: 1405 DPL-FPNSPWENIKVLWDDT---EEEDRVNYWEID 1435
Score = 52 (23.4 bits), Expect = 9.8e-05, Sum P(2) = 9.8e-05
Identities = 18/50 (36%), Positives = 22/50 (44%)
Query: 597 NNGVLVPNANQNVQQPTVYSQLQQP-----QLLTSNTQAPQGILSNNKNS 641
N V+ N Q QQP Q QQP QL +NT +NN N+
Sbjct: 1456 NEKVIENNQQQQQQQPQQQPQ-QQPIQNNQQLSINNTNVNNNNNNNNNNN 1504
Score = 44 (20.5 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 604 NANQNVQQPTVYSQLQQPQLLTSNTQAPQGILSNNKNSYQLT 645
N N N +Y ++ +NT + NN N Y T
Sbjct: 1564 NNNNNFMNYNMYQGNYNGMMMNNNTSNYSYLDPNNSNMYMQT 1605
>TAIR|locus:2064417 [details] [associations]
symbol:HSI2 "high-level expression of sugar-inducible
gene 2" species:3702 "Arabidopsis thaliana" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0009737 "response to abscisic acid stimulus" evidence=TAS]
[GO:0009744 "response to sucrose stimulus" evidence=TAS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0010030 "positive regulation of seed germination"
evidence=IGI] [GO:2000034 "regulation of seed maturation"
evidence=IGI] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR003340 InterPro:IPR011124 Pfam:PF02362 Pfam:PF07496
PROSITE:PS50863 PROSITE:PS51050 SMART:SM01019 GO:GO:0005739
GO:GO:0009737 GO:GO:0005634 GO:GO:0045892 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0010030
GO:GO:0009744 GO:GO:0008270 GO:GO:0003700 GO:GO:0006351
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936 EMBL:U93215
HSSP:Q9ZWM9 EMBL:AB206553 EMBL:AY062492 IPI:IPI00532565 PIR:G84708
RefSeq:NP_850146.1 UniGene:At.27438 ProteinModelPortal:Q8W4L5
SMR:Q8W4L5 IntAct:Q8W4L5 STRING:Q8W4L5 PaxDb:Q8W4L5 PRIDE:Q8W4L5
EnsemblPlants:AT2G30470.1 GeneID:817597 KEGG:ath:AT2G30470
TAIR:At2g30470 eggNOG:NOG244543 HOGENOM:HOG000084353
InParanoid:Q8W4L5 OMA:CMNASCG PhylomeDB:Q8W4L5
ProtClustDB:CLSN2918136 Genevestigator:Q8W4L5 GO:GO:2000034
Uniprot:Q8W4L5
Length = 790
Score = 129 (50.5 bits), Expect = 0.00016, P = 0.00016
Identities = 40/127 (31%), Positives = 59/127 (46%)
Query: 103 KYEKEAILASDMGLKQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPP 162
KY + + L N P F KTL+ASD G +P+ AE FPP+ S P
Sbjct: 274 KYTDKEVQQISGNLNLNIVP--LFEKTLSASDAGRIGRLVLPKACAEAYFPPISQSEGIP 331
Query: 163 AQEIVARDLHDTTWTFRHIY-RGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIR-DEKSQL 220
+ +D+ WTF+ Y R + G + + + L AGD+V F R D +L
Sbjct: 332 LK---IQDVRGREWTFQFRYWPNNNSRMYVLEGVTPCIQSMMLQAGDTVTFSRVDPGGKL 388
Query: 221 LLGIRRA 227
++G R+A
Sbjct: 389 IMGSRKA 395
>TAIR|locus:2080782 [details] [associations]
symbol:AT3G11580 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009062
"fatty acid catabolic process" evidence=RCA] InterPro:IPR003340
Pfam:PF02362 PROSITE:PS50863 SMART:SM01019 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 EMBL:AC008153 HSSP:Q9ZWM9 HOGENOM:HOG000239355
EMBL:AJ441076 EMBL:AK175281 EMBL:BT029371 IPI:IPI00539345
IPI:IPI00547561 RefSeq:NP_187765.2 RefSeq:NP_850559.1
UniGene:At.39724 ProteinModelPortal:Q8RYD3 SMR:Q8RYD3
EnsemblPlants:AT3G11580.1 GeneID:820331 KEGG:ath:AT3G11580
TAIR:At3g11580 eggNOG:NOG285931 InParanoid:Q8RYD3 OMA:CHGDAVE
PhylomeDB:Q8RYD3 ProtClustDB:CLSN2918062 Genevestigator:Q8RYD3
Uniprot:Q8RYD3
Length = 267
Score = 121 (47.7 bits), Expect = 0.00019, P = 0.00019
Identities = 38/118 (32%), Positives = 54/118 (45%)
Query: 121 QPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVA----------RD 170
Q F K+LT SD +P++ AEK FP + + + + VA D
Sbjct: 24 QRESLFEKSLTPSDVGKLNRLVIPKQHAEKYFPLNNNNNNGGSGDDVATTEKGMLLSFED 83
Query: 171 LHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRD--EKSQLLLGIRR 226
W FR+ Y + ++LT GWS +V K L AGD V F R + +L +G RR
Sbjct: 84 ESGKCWKFRYSYWNSSQSYVLTKGWSRYVKDKHLDAGDVVFFQRHRFDLHRLFIGWRR 141
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.130 0.393 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1020 732 0.00087 121 3 11 22 0.43 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 34
No. of states in DFA: 629 (67 KB)
Total size of DFA: 397 KB (2192 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 58.62u 0.13s 58.75t Elapsed: 00:00:02
Total cpu time: 58.62u 0.13s 58.75t Elapsed: 00:00:03
Start: Tue May 21 22:15:09 2013 End: Tue May 21 22:15:12 2013