Query 001728
Match_columns 1020
No_of_seqs 303 out of 573
Neff 3.5
Searched_HMMs 29240
Date Tue Mar 26 15:48:22 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001728.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1027-1031//hhsearch_pdb/001728hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 1.0 1 1 215.1 14.5 114 118-231 6-121 (130)
2 4i1k_A B3 domain-containing tr 1.0 1 1 153.1 11.5 100 121-230 44-145 (146)
3 1yel_A AT1G16640; CESG, protei 1.0 1 1 122.6 10.1 96 122-228 7-102 (104)
4 4b8c_D Glucose-repressible alc 1.0 1 1 65.2 4.4 108 468-590 21-128 (727)
5 1na6_A Ecorii, restriction end 1.0 1 1 43.0 6.4 93 122-215 17-123 (404)
6 3iot_A Maltose-binding protein 1.0 1 1 36.4 0.8 54 532-585 381-434 (449)
7 2jng_A Cullin-7, CUL-7; P53 bi 1.0 1 1 21.3 3.8 75 273-361 6-80 (105)
8 3p8d_A Medulloblastoma antigen 1.0 1 1 19.2 3.9 56 286-359 3-58 (67)
9 3pie_A 5'->3' exoribonuclease 1.0 1 1 18.9 6.4 98 246-351 1021-1121(1155)
10 3qii_A PHD finger protein 20; 1.0 1 1 18.5 3.9 52 289-358 21-72 (85)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=1.00 E-value=1 Score=215.06 Aligned_cols=114 Identities=31% Similarity=0.507 Sum_probs=105.0
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCEEECHHHHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEECCCCHH
Q ss_conf 79997306999545567998784044031253219999999999960899983799837989999489974034255111
Q 001728 118 QNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSV 197 (1020)
Q Consensus 118 ~~~~~~~sF~KtLTaSDVst~GrLsIPkr~AE~~FPpLD~s~~~PsqeLvvkDlhGkeW~FRhiyRgqprRhlLTTGWS~ 197 (1020)
..++..++|+|+||+|||+++++|+||+++|++|||+++.....++++|.++|.+|++|+|+|+||+++++|+|++||+.
T Consensus 6 ~~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~ 85 (130)
T 1wid_A 6 SGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSR 85 (130)
T ss_dssp --CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHH
T ss_pred CCCCCCCEEEEEEEHHHCCCCCEEEECHHHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEECCCHHH
T ss_conf 89998624999985577189777996789999668865444578838999995899999999999789996388377488
Q ss_pred HHCCCCCCCCCEEEEEECC--CCCEEEEEEECCCCC
Q ss_conf 2113788889869999737--973999999446889
Q 001728 198 FVSTKRLFAGDSVLFIRDE--KSQLLLGIRRANRQQ 231 (1020)
Q Consensus 198 FVkeKkLvAGDsVVF~R~e--~GeL~VGIRRA~r~~ 231 (1020)
||++|+|++||+|+|++++ ++.|+|+|||+.+..
T Consensus 86 FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~ 121 (130)
T 1wid_A 86 FVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD 121 (130)
T ss_dssp HHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred HHHHCCCCCCCEEEEEEECCCCCEEEEEEEECCCCC
T ss_conf 778719988989999995389968999999899998
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=1.00 E-value=1 Score=153.09 Aligned_cols=100 Identities=23% Similarity=0.299 Sum_probs=88.2
Q ss_pred CCCEEEEEECCCCCCCCCCCEEECHHHHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEECCCCHHHHC
Q ss_conf 97306999545567998784044031253219999999999960899983799837989999489974034255111211
Q 001728 121 QPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVS 200 (1020)
Q Consensus 121 ~~~~sF~KtLTaSDVst~GrLsIPkr~AE~~FPpLD~s~~~PsqeLvvkDlhGkeW~FRhiyRgqprRhlLTTGWS~FVk 200 (1020)
+..++|+|+||+||+.++++|.||+.+++++||..+ .++.+.|. |+.|+|+|+|++ .++.|++||+.||+
T Consensus 44 s~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~-------~~i~L~~~-gk~W~v~~~~~~--~~~~ls~GW~~Fv~ 113 (146)
T 4i1k_A 44 PTNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGIS-------GFIKVQLA-EKQWPVRCLYKA--GRAKFSQGWYEFTL 113 (146)
T ss_dssp CSSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCC-------SEEEEEET-TEEEEEEEEEET--TEEEECTTHHHHHH
T ss_pred CCCCEEEEEECCHHCCCCCEEEECHHHHHHHCCCCC-------EEEEEEEC-CCEEEEEEEEEC--CCEEECCCHHHHHH
T ss_conf 999989999785661898679909999997488888-------37999979-947898999958--90787776389888
Q ss_pred CCCCCCCCEEEEEECCCC--CEEEEEEECCCC
Q ss_conf 378888986999973797--399999944688
Q 001728 201 TKRLFAGDSVLFIRDEKS--QLLLGIRRANRQ 230 (1020)
Q Consensus 201 eKkLvAGDsVVF~R~e~G--eL~VGIRRA~r~ 230 (1020)
+++|++||+|+|...++. .|.|.|.|+...
T Consensus 114 dn~L~~GD~cvFeli~~~~~~f~V~IfR~~e~ 145 (146)
T 4i1k_A 114 ENNLGEGDVCVFELLRTRDFVLKVTAFRVNEY 145 (146)
T ss_dssp HTTCCTTCEEEEEECSSSSCEEEEEEECCC--
T ss_pred HCCCCCCCEEEEEEECCCCEEEEEEEEECCCC
T ss_conf 75999898999999369865999999944578
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=1.00 E-value=1 Score=122.61 Aligned_cols=96 Identities=25% Similarity=0.397 Sum_probs=83.2
Q ss_pred CCEEEEEECCCCCCCCCCCEEECHHHHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEECCCCHHHHCC
Q ss_conf 73069995455679987840440312532199999999999608999837998379899994899740342551112113
Q 001728 122 PTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVST 201 (1020)
Q Consensus 122 ~~~sF~KtLTaSDVst~GrLsIPkr~AE~~FPpLD~s~~~PsqeLvvkDlhGkeW~FRhiyRgqprRhlLTTGWS~FVke 201 (1020)
..+.|.|+|+++|. ..+|.||+.+++.+.+.+. ..+.++|..|++|++++.+++ ++.+|++||..||++
T Consensus 7 ~~p~F~K~l~~~~~--~~~L~IP~~F~~~~~~~~~-------~~v~L~~~~G~~W~v~~~~~~--~~~~l~~GW~~Fv~~ 75 (104)
T 1yel_A 7 GEVQFMKPFISEKS--SKSLEIPLGFNEYFPAPFP-------ITVDLLDYSGRSWTVRMKKRG--EKVFLTVGWENFVKD 75 (104)
T ss_dssp CCEEEEEECCHHHH--TTCEECCHHHHTTCCCCCC-------SEEEEEETTSCEEEEEEEEET--TEEEECTTHHHHHHH
T ss_pred CCCCEEEEECCCCC--CCEEECCHHHHHHCCCCCC-------CEEEEECCCCCEEEEEEEEEC--CCEEECCCHHHHHHH
T ss_conf 89878999877775--5318889999986486699-------889999799999999999989--949986294999997
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEEECC
Q ss_conf 788889869999737973999999446
Q 001728 202 KRLFAGDSVLFIRDEKSQLLLGIRRAN 228 (1020)
Q Consensus 202 KkLvAGDsVVF~R~e~GeL~VGIRRA~ 228 (1020)
++|++||.|+|...++..+.|.|.|.+
T Consensus 76 ~~L~~GD~lvF~~~~~~~f~V~If~~s 102 (104)
T 1yel_A 76 NNLEDGKYLQFIYDRDRTFYVIIYGHN 102 (104)
T ss_dssp HTCCTTCEEEEEECSSSEEEEEEECSS
T ss_pred CCCCCCCEEEEEECCCCEEEEEEECCC
T ss_conf 599989899999858976999997898
No 4
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=1.00 E-value=1 Score=65.23 Aligned_cols=108 Identities=20% Similarity=0.118 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 75335788971001358999988427899999832921233211712479888896520330157887765310368999
Q 001728 468 PNLQFSKANPQNQVNQLPQSPIAWTQQQQLQHLLQNPLNQQQQQHPQLHQQRQQQQQLLHPQQSQQQQQQQQNHHHHNQQ 547 (1020)
Q Consensus 468 ~~~~~~~~~~~~~~~~l~~~~~~~~~QqQlQq~~q~~~qqqQqq~~q~qqq~Qq~Q~q~~~q~~q~qqQqqq~~h~h~qq 547 (1020)
+.+-+|..+..-+ .++-.+.+--+.+.++|..+. +.+++++.|+++++++.+.+..+|+ |.+||||||.
T Consensus 21 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-q~q~~~qqq~------ 89 (727)
T 4b8c_D 21 VNINVNASNPLLH-PHLDDPSLLNNPIWKLQLHLA---AVSAQSLGQPNIYARQNAMKKYLAT-QQAQQAQQQA------ 89 (727)
T ss_dssp ----CCSSCTTTS-GGGTSCCCTTSHHHHHHHHHH---HHHHHSTTSTTHHHHHHHHHHHC-------------------
T ss_pred CCCCCCCCCCCCC-CCCCCCHHCCCCHHHHHHHHH---HHCHHCCCCCHHHHHHHHHHHHHHH-HCHHHHHHHH------
T ss_conf 5434456885556-777880210482277777887---6331212660499999999988750-1306678887------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCC
Q ss_conf 9999999999999998777799999999975134201311101
Q 001728 548 PPPPPQLQPSPTPPHSQSQSQSPVPQRPQQQPQQQQQQPQQQI 590 (1020)
Q Consensus 548 ~~~~~qq~~q~~~~~~~~~~~~q~q~~~qqq~q~q~Qq~q~q~ 590 (1020)
++|+++...++++.+.++++++++++|+|++++++....
T Consensus 90 ----~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s 128 (727)
T 4b8c_D 90 ----QQQAQQQVPGPFGPGPQAAPPALQPTDFQQSHIAEASKS 128 (727)
T ss_dssp -------------------------------------------
T ss_pred ----HHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHH
T ss_conf ----760667666765668666752000232126566533342
No 5
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=1.00 E-value=1 Score=43.04 Aligned_cols=93 Identities=22% Similarity=0.269 Sum_probs=67.6
Q ss_pred CCEEEEEECCCCCCCCC----CCEEECHHHHHHCCCCCC-CCCCCCCEEEEE--EECCCCEEEEEEEEEC------CCCC
Q ss_conf 73069995455679987----840440312532199999-999999608999--8379983798999948------9974
Q 001728 122 PTEFFCKTLTASDTSTH----GGFSVPRRAAEKIFPPLD-YSMQPPAQEIVA--RDLHDTTWTFRHIYRG------QPKR 188 (1020)
Q Consensus 122 ~~~sF~KtLTaSDVst~----GrLsIPkr~AE~~FPpLD-~s~~~PsqeLvv--kDlhGkeW~FRhiyRg------qprR 188 (1020)
....|+|.|++.|++.. .++.+|+......||.++ .....+...+.+ .|..+-++.++.+|.+ ++..
T Consensus 17 ~~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRnE 96 (404)
T 1na6_A 17 NYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNE 96 (404)
T ss_dssp SEEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCE
T ss_pred CCHHEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCCCCCC
T ss_conf 60413577224457887776444578568999863548986556776315778416888427789998326466898874
Q ss_pred EEECCCCH-HHHCCCCCCCCCEEEEEEC
Q ss_conf 03425511-1211378888986999973
Q 001728 189 HLLTTGWS-VFVSTKRLFAGDSVLFIRD 215 (1020)
Q Consensus 189 hlLTTGWS-~FVkeKkLvAGDsVVF~R~ 215 (1020)
|.||. |. .+.-.....+||-+||.+.
T Consensus 97 yRLt~-~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 97 KRITR-WGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEEEC-CCTTSGGGCGGGTTCEEEEEEE
T ss_pred EEEEE-CCCCCCCCCCCCCCCEEEEEEE
T ss_conf 58840-2789865466888788999872
No 6
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=1.00 E-value=1 Score=36.37 Aligned_cols=54 Identities=26% Similarity=0.343 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCC
Q ss_conf 788776531036899999999999999999987777999999999751342013
Q 001728 532 QQQQQQQQNHHHHNQQPPPPPQLQPSPTPPHSQSQSQSPVPQRPQQQPQQQQQQ 585 (1020)
Q Consensus 532 q~qqQqqq~~h~h~qq~~~~~qq~~q~~~~~~~~~~~~q~q~~~qqq~q~q~Qq 585 (1020)
|.+.+|.|+++++.+|+++++++++.+....++..+..++++++++.+.++.++
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (449)
T 3iot_A 381 FESLKSFQQQQQQQQQQQQQQQQQPPPPPPPPPPPQLPQPPPQAQPLLPQQSYQ 434 (449)
T ss_dssp HHHHHHTC----------------------------------------------
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 999986464323656788899998798978887699999979899999988755
No 7
>2jng_A Cullin-7, CUL-7; P53 binding domain, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} SCOP: b.34.9.4 PDB: 2juf_A
Probab=1.00 E-value=1 Score=21.29 Aligned_cols=75 Identities=25% Similarity=0.234 Sum_probs=49.6
Q ss_pred CCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 95310247686977227543654535432046664201149988416898888899752045302567789999986656
Q 001728 273 SEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDESTAGERPSRVSLW 352 (1020)
Q Consensus 273 sEFVVp~~kY~kAl~~~WsvGMRFKM~FEtEdss~rry~GTIvgIsd~DP~rWp~S~WR~LqV~WDE~~~~~r~~RVSPW 352 (1020)
+|| -..+.|-.-+..+..+|||+||.=.-||-+. -=.|++. ++ -+ +-+ ..+|.|.... +.-.|+-=
T Consensus 6 sdF-~s~~~Ya~YVr~~l~pGM~VR~~~dyeev~~-GD~G~vl-~s-~~-----Gl~--~vQv~W~~~G---~TyWV~~~ 71 (105)
T 2jng_A 6 SEF-ASGNTYALYVRDTLQPGMRVRMLDDYEEISA-GDEGEFR-QS-NN-----GVP--PVQVFWESTG---RTYWVHWH 71 (105)
T ss_dssp GGS-SSSHHHHHHHHHHCCTTCEEEECSCBTTBCT-TCEEEEE-EE-CT-----TSS--EEEEEETTTT---EEEEEEGG
T ss_pred HHC-CCCHHHHHHHHHCCCCCCEEEEEHHHHHHCC-CCCEEEE-EC-CC-----CCC--CCEEEEHHCC---CEEEEEEE
T ss_conf 553-5500489999854897658752021554156-7742588-63-79-----984--1210003059---36898700
Q ss_pred CCCCCCCCC
Q ss_conf 334346899
Q 001728 353 ETEPVVTPF 361 (1020)
Q Consensus 353 EIEpv~~~~ 361 (1020)
.||.+..+.
T Consensus 72 ~~Ellg~~~ 80 (105)
T 2jng_A 72 MLEILGFEE 80 (105)
T ss_dssp GEEECCCCC
T ss_pred HHHHCCCCC
T ss_conf 112207853
No 8
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=19.19 Aligned_cols=56 Identities=11% Similarity=0.194 Sum_probs=42.4
Q ss_pred HHCCCCCCCEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 72275436545354320466642011499884168988888997520453025677899999866563343468
Q 001728 286 MYTQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDESTAGERPSRVSLWETEPVVT 359 (1020)
Q Consensus 286 l~~~WsvGMRFKM~FEtEdss~rry~GTIvgIsd~DP~rWp~S~WR~LqV~WDE~~~~~r~~RVSPWEIEpv~~ 359 (1020)
|...|.+|+++--++ ++ .++|-++|++|... ....|.+++.. .+.|..=+|.|+..
T Consensus 3 ~~~~~~vGd~vmArW-~D---~~yYpA~I~si~~~----------~~Y~V~F~dG~----~etvk~~~ikp~~~ 58 (67)
T 3p8d_A 3 MSSEFQINEQVLACW-SD---CRFYPAKVTAVNKD----------GTYTVKFYDGV----VQTVKHIHVKAFSK 58 (67)
T ss_dssp --CCCCTTCEEEEEC-TT---SCEEEEEEEEECTT----------SEEEEEETTSC----EEEEEGGGEEECC-
T ss_pred CCCCCCCCCEEEEEC-CC---CCEEEEEEEEECCC----------CEEEEEEECCC----EEEEEHHHCCCCCC
T ss_conf 676244699999991-79---98756899998799----------72999994896----69971899442880
No 9
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=1.00 E-value=1 Score=18.89 Aligned_cols=98 Identities=11% Similarity=0.103 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHH-CCCCCCCEEEEEEECCCCCCCCEEEEEEEECCCCCCC
Q ss_conf 113899999996399589998179999953102476869772-2754365453543204666420114998841689888
Q 001728 246 IGILAAAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMY-TQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLR 324 (1020)
Q Consensus 246 ~gvLAaAahaaat~s~F~V~Y~PRas~sEFVVp~~kY~kAl~-~~WsvGMRFKM~FEtEdss~rry~GTIvgIsd~DP~r 324 (1020)
+..+.+++........-.+.=.-+.=+.+.+.....-..-+. -.+.+|+|+.|.=+.-..+..- .|||+||..
T Consensus 1021 v~~iE~~~~~~~~~~~~~~~k~~~~VPr~allkP~~a~~~L~~Q~F~LGDRVv~VqdsG~VPl~~-kGTVVGi~~----- 1094 (1155)
T 3pie_A 1021 MAAVESEIIKYVSLPDSSEQKKLAKVPREAILNAESSYVLLRSQRFHLGDRVMYIQDSGKVPLHS-KGTVVGYTS----- 1094 (1155)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHEECHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCC-CEEEEEEEC-----
T ss_conf 99999999998613576654201489999905977850404577655777599955788884205-148998723-----
Q ss_pred CCCCCCCEEEEECCCCCCCCCCC--CCCC
Q ss_conf 88997520453025677899999--8665
Q 001728 325 WKNSQWRNLQVGWDESTAGERPS--RVSL 351 (1020)
Q Consensus 325 Wp~S~WR~LqV~WDE~~~~~r~~--RVSP 351 (1020)
.+.=.+|.|-||++=.+...= |-|+
T Consensus 1095 --~~~~~~ldVvFD~~F~~G~tlggrcs~ 1121 (1155)
T 3pie_A 1095 --IGKNVSIQVLFDNEIIAGNNFGGRLQT 1121 (1155)
T ss_pred --CCCCEEEEEEECCCCCCCCCCCCCCCC
T ss_conf --887527989953675677730563665
No 10
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=18.45 Aligned_cols=52 Identities=10% Similarity=0.213 Sum_probs=0.0
Q ss_pred CCCCCCEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7543654535432046664201149988416898888899752045302567789999986656334346
Q 001728 289 QVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQVGWDESTAGERPSRVSLWETEPVV 358 (1020)
Q Consensus 289 ~WsvGMRFKM~FEtEdss~rry~GTIvgIsd~DP~rWp~S~WR~LqV~WDE~~~~~r~~RVSPWEIEpv~ 358 (1020)
.|.+|+++-.+| ++ .+||-++|++|. ++ ....|.+++.. .+.|..=+|.|+.
T Consensus 21 ~f~vGd~VlArW-~D---~~yYPAkI~sV~--------~~--~~YtV~F~DG~----~etvk~~~IKp~~ 72 (85)
T 3qii_A 21 EFQINEQVLACW-SD---CRFYPAKVTAVN--------KD--GTYTVKFYDGV----VQTVKHIHVKAFS 72 (85)
T ss_dssp CCCTTCEEEEEC-TT---SCEEEEEEEEEC--------TT--SEEEEEETTSC----EEEEEGGGEEECC
T ss_pred CCCCCCEEEEEE-CC---CCEEEEEEEEEC--------CC--CEEEEEEECCC----EEEECHHHCCCCC
T ss_conf 134599999993-89---988568999987--------99--71999993897----6896689943488
Done!