Query 001729
Match_columns 1020
No_of_seqs 820 out of 3944
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 07:55:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001729.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001729hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0922 DEAH-box RNA helicase 100.0 5E-113 1E-117 976.4 26.2 573 16-687 40-652 (674)
2 KOG0923 mRNA splicing factor A 100.0 7E-113 2E-117 958.8 25.4 587 20-703 258-894 (902)
3 KOG0925 mRNA splicing factor A 100.0 7E-113 1E-117 931.3 19.9 588 22-712 42-687 (699)
4 KOG0924 mRNA splicing factor A 100.0 1E-108 2E-113 924.3 22.0 580 19-696 348-977 (1042)
5 KOG0920 ATP-dependent RNA heli 100.0 1.2E-97 2E-102 893.3 33.5 739 20-913 166-922 (924)
6 PRK11131 ATP-dependent RNA hel 100.0 6E-96 1E-100 911.4 23.8 587 18-687 64-682 (1294)
7 COG1643 HrpA HrpA-like helicas 100.0 5.3E-93 1.2E-97 858.8 25.5 532 17-631 40-585 (845)
8 TIGR01967 DEAH_box_HrpA ATP-de 100.0 4.5E-92 9.8E-97 880.4 23.2 579 23-687 63-672 (1283)
9 KOG0926 DEAH-box RNA helicase 100.0 6.4E-87 1.4E-91 759.8 21.9 448 18-520 247-814 (1172)
10 TIGR01970 DEAH_box_HrpB ATP-de 100.0 7.7E-76 1.7E-80 721.8 22.2 440 26-520 1-445 (819)
11 PRK11664 ATP-dependent RNA hel 100.0 2.8E-73 6.1E-78 700.9 22.9 438 25-517 3-447 (812)
12 KOG0921 Dosage compensation co 100.0 1.3E-54 2.7E-59 500.2 20.9 556 21-632 372-964 (1282)
13 PHA02653 RNA helicase NPH-II; 100.0 1.5E-52 3.2E-57 504.9 17.2 394 31-501 168-594 (675)
14 PRK01172 ski2-like helicase; P 100.0 1.3E-37 2.8E-42 385.0 16.6 415 26-502 21-492 (674)
15 KOG0331 ATP-dependent RNA heli 100.0 4.8E-36 1E-40 343.8 18.7 316 28-404 114-451 (519)
16 KOG0330 ATP-dependent RNA heli 100.0 3.6E-36 7.7E-41 323.9 14.8 310 28-401 84-407 (476)
17 PRK02362 ski2-like helicase; P 100.0 1E-35 2.3E-40 370.6 20.2 420 27-500 23-512 (737)
18 PRK11776 ATP-dependent RNA hel 100.0 6E-35 1.3E-39 346.3 19.3 310 28-403 27-351 (460)
19 PRK04837 ATP-dependent RNA hel 100.0 1.1E-34 2.4E-39 340.5 19.9 311 28-403 31-364 (423)
20 PTZ00110 helicase; Provisional 100.0 1.8E-34 3.9E-39 346.7 20.3 314 28-403 153-486 (545)
21 PRK11192 ATP-dependent RNA hel 100.0 1.6E-34 3.4E-39 340.5 17.5 317 27-404 23-355 (434)
22 PRK10590 ATP-dependent RNA hel 100.0 3E-34 6.5E-39 339.4 18.9 312 27-403 23-354 (456)
23 PRK00254 ski2-like helicase; P 100.0 1.6E-34 3.4E-39 359.1 15.0 416 28-499 24-502 (720)
24 COG0513 SrmB Superfamily II DN 100.0 3.3E-34 7.2E-39 341.4 17.1 314 28-401 52-380 (513)
25 PLN00206 DEAD-box ATP-dependen 100.0 6.6E-34 1.4E-38 340.7 19.2 312 28-403 144-477 (518)
26 PRK11634 ATP-dependent RNA hel 100.0 6.8E-34 1.5E-38 344.9 18.7 311 27-403 28-354 (629)
27 PRK04537 ATP-dependent RNA hel 100.0 1.4E-33 3E-38 340.3 18.5 312 28-403 32-366 (572)
28 PTZ00424 helicase 45; Provisio 100.0 4.2E-33 9E-38 325.2 19.1 315 28-404 51-377 (401)
29 PRK01297 ATP-dependent RNA hel 100.0 5.9E-33 1.3E-37 330.4 19.7 308 28-402 110-443 (475)
30 KOG0342 ATP-dependent RNA heli 100.0 3.2E-32 6.9E-37 301.8 16.6 317 27-402 104-438 (543)
31 KOG0333 U5 snRNP-like RNA heli 100.0 3.4E-32 7.4E-37 302.0 15.7 307 28-402 268-625 (673)
32 KOG0345 ATP-dependent RNA heli 100.0 3.7E-32 8.1E-37 299.0 15.7 332 28-418 29-384 (567)
33 TIGR00614 recQ_fam ATP-depende 100.0 7.2E-32 1.6E-36 320.1 18.2 312 28-404 12-336 (470)
34 KOG0338 ATP-dependent RNA heli 100.0 2.2E-32 4.7E-37 302.3 11.6 317 28-404 204-536 (691)
35 PRK11057 ATP-dependent DNA hel 100.0 4.4E-31 9.5E-36 321.6 17.8 311 27-404 25-346 (607)
36 KOG0340 ATP-dependent RNA heli 100.0 5.3E-31 1.1E-35 281.1 16.1 315 28-403 30-363 (442)
37 KOG0328 Predicted ATP-dependen 100.0 8.4E-31 1.8E-35 271.4 17.1 313 28-405 50-377 (400)
38 PLN03137 ATP-dependent DNA hel 100.0 6.7E-31 1.5E-35 322.1 17.5 312 28-404 461-790 (1195)
39 KOG0343 RNA Helicase [RNA proc 100.0 5.1E-31 1.1E-35 293.7 14.2 317 26-403 90-424 (758)
40 TIGR03817 DECH_helic helicase/ 100.0 7.8E-31 1.7E-35 324.1 15.5 321 27-400 36-385 (742)
41 PRK13767 ATP-dependent helicas 100.0 3E-30 6.4E-35 324.9 20.4 316 28-397 33-396 (876)
42 COG1204 Superfamily II helicas 100.0 5.1E-31 1.1E-35 322.4 11.4 422 27-498 31-522 (766)
43 KOG0335 ATP-dependent RNA heli 100.0 3.4E-30 7.3E-35 291.0 13.2 316 26-399 95-442 (482)
44 TIGR01389 recQ ATP-dependent D 100.0 1.1E-29 2.4E-34 309.9 17.9 306 28-404 14-334 (591)
45 KOG0339 ATP-dependent RNA heli 100.0 9E-30 2E-34 281.0 14.7 315 27-404 245-578 (731)
46 KOG0336 ATP-dependent RNA heli 100.0 1.2E-29 2.6E-34 273.7 14.3 313 28-404 243-575 (629)
47 KOG0347 RNA helicase [RNA proc 100.0 1.2E-29 2.6E-34 282.9 14.2 322 28-402 204-571 (731)
48 KOG0332 ATP-dependent RNA heli 100.0 6.4E-29 1.4E-33 266.5 18.6 315 29-401 114-443 (477)
49 KOG0348 ATP-dependent RNA heli 100.0 8E-30 1.7E-34 283.5 11.4 344 27-405 159-560 (708)
50 COG1111 MPH1 ERCC4-like helica 100.0 1.3E-28 2.9E-33 275.3 20.4 355 22-401 10-481 (542)
51 COG1202 Superfamily II helicas 100.0 2.9E-29 6.4E-34 280.7 14.7 418 28-517 217-679 (830)
52 TIGR00580 mfd transcription-re 100.0 4.9E-28 1.1E-32 301.9 18.8 300 27-401 451-770 (926)
53 COG1201 Lhr Lhr-like helicases 100.0 5.2E-28 1.1E-32 292.0 17.5 313 28-398 23-361 (814)
54 KOG0326 ATP-dependent RNA heli 100.0 1.6E-28 3.5E-33 258.2 10.8 311 28-402 108-430 (459)
55 PRK10917 ATP-dependent DNA hel 100.0 1.4E-27 3.1E-32 293.9 19.8 300 26-399 260-587 (681)
56 KOG0354 DEAD-box like helicase 100.0 3E-27 6.6E-32 278.8 21.3 352 23-401 58-529 (746)
57 TIGR00643 recG ATP-dependent D 99.9 2.7E-27 5.8E-32 289.7 18.2 298 27-399 235-564 (630)
58 KOG0341 DEAD-box protein abstr 99.9 4.1E-28 8.8E-33 260.2 8.8 310 27-401 192-528 (610)
59 TIGR01587 cas3_core CRISPR-ass 99.9 1.6E-27 3.4E-32 274.1 13.6 296 44-402 1-337 (358)
60 TIGR02621 cas3_GSU0051 CRISPR- 99.9 1.8E-26 3.8E-31 280.3 21.0 327 28-425 16-416 (844)
61 PRK10689 transcription-repair 99.9 6.4E-27 1.4E-31 297.8 17.1 300 26-400 599-918 (1147)
62 PRK09751 putative ATP-dependen 99.9 4.1E-27 9E-32 300.5 15.2 303 47-392 1-374 (1490)
63 COG0514 RecQ Superfamily II DN 99.9 2.3E-26 5E-31 269.0 19.9 307 30-404 20-340 (590)
64 PHA02558 uvsW UvsW helicase; P 99.9 3.8E-25 8.1E-30 264.3 23.4 319 25-393 112-443 (501)
65 KOG4284 DEAD box protein [Tran 99.9 4.5E-26 9.9E-31 257.5 14.0 315 29-401 49-379 (980)
66 KOG0350 DEAD-box ATP-dependent 99.9 1.7E-26 3.7E-31 255.9 10.4 316 28-403 160-542 (620)
67 KOG0952 DNA/RNA helicase MER3/ 99.9 1.1E-26 2.3E-31 275.6 8.1 445 28-517 111-639 (1230)
68 PRK13766 Hef nuclease; Provisi 99.9 1.3E-24 2.8E-29 273.9 22.1 360 18-402 6-480 (773)
69 KOG0334 RNA helicase [RNA proc 99.9 3E-25 6.6E-30 266.3 14.5 314 27-402 387-721 (997)
70 KOG0346 RNA helicase [RNA proc 99.9 9.2E-26 2E-30 246.5 8.6 309 29-401 43-410 (569)
71 TIGR03158 cas3_cyano CRISPR-as 99.9 1.5E-24 3.3E-29 248.3 15.9 310 31-387 1-357 (357)
72 KOG0344 ATP-dependent RNA heli 99.9 1E-24 2.2E-29 247.9 12.9 315 29-404 160-498 (593)
73 KOG0327 Translation initiation 99.9 2.4E-24 5.2E-29 234.1 13.8 311 28-406 49-375 (397)
74 KOG0948 Nuclear exosomal RNA h 99.9 2.6E-23 5.5E-28 238.9 19.5 350 25-401 127-539 (1041)
75 TIGR00603 rad25 DNA repair hel 99.9 1E-22 2.2E-27 245.5 23.1 317 23-402 251-608 (732)
76 KOG0352 ATP-dependent DNA heli 99.9 2E-23 4.3E-28 227.0 14.9 322 30-406 23-367 (641)
77 KOG0951 RNA helicase BRR2, DEA 99.9 3.2E-23 6.9E-28 248.5 15.2 417 28-491 310-820 (1674)
78 KOG0337 ATP-dependent RNA heli 99.9 2.8E-23 6.1E-28 226.4 10.0 311 28-402 44-369 (529)
79 KOG0947 Cytoplasmic exosomal R 99.9 5.3E-22 1.1E-26 233.3 19.9 355 26-401 296-723 (1248)
80 PRK09401 reverse gyrase; Revie 99.9 2.1E-22 4.5E-27 257.3 16.2 292 26-388 79-430 (1176)
81 COG1205 Distinct helicase fami 99.9 2.5E-22 5.4E-27 249.5 14.5 323 25-401 68-422 (851)
82 PRK05580 primosome assembly pr 99.9 3.4E-22 7.4E-27 245.6 14.9 325 24-397 141-545 (679)
83 PRK14701 reverse gyrase; Provi 99.9 5.3E-22 1.2E-26 258.3 13.6 311 27-402 79-457 (1638)
84 COG4581 Superfamily II RNA hel 99.9 1.7E-21 3.6E-26 238.7 16.1 352 24-400 116-536 (1041)
85 COG1061 SSL2 DNA or RNA helica 99.9 1.9E-20 4E-25 220.0 23.8 322 23-391 32-378 (442)
86 KOG0351 ATP-dependent DNA heli 99.9 1.4E-21 3E-26 241.1 13.9 312 29-405 266-596 (941)
87 COG1200 RecG RecG-like helicas 99.9 2.5E-21 5.3E-26 226.0 15.0 301 26-401 261-591 (677)
88 TIGR03714 secA2 accessory Sec 99.9 5.2E-21 1.1E-25 230.8 17.6 105 276-402 424-538 (762)
89 COG4098 comFA Superfamily II D 99.8 3E-20 6.5E-25 198.6 19.8 302 28-397 98-412 (441)
90 TIGR00595 priA primosomal prot 99.8 1.9E-21 4.1E-26 231.1 10.5 297 46-396 1-376 (505)
91 PRK09694 helicase Cas3; Provis 99.8 2E-20 4.3E-25 231.8 17.7 317 26-389 285-662 (878)
92 PRK09200 preprotein translocas 99.8 1.7E-20 3.8E-25 228.4 14.7 106 276-402 428-542 (790)
93 PRK12898 secA preprotein trans 99.8 9.8E-21 2.1E-25 226.1 11.6 104 277-402 474-587 (656)
94 TIGR01054 rgy reverse gyrase. 99.8 3.6E-20 7.8E-25 237.2 16.8 274 26-358 77-411 (1171)
95 TIGR00963 secA preprotein tran 99.8 3.1E-20 6.8E-25 222.7 14.2 105 276-402 405-518 (745)
96 COG1197 Mfd Transcription-repa 99.8 7.6E-20 1.7E-24 224.2 17.1 297 29-401 596-913 (1139)
97 PRK11448 hsdR type I restricti 99.8 3.6E-19 7.8E-24 226.5 21.1 341 26-399 412-813 (1123)
98 KOG0921 Dosage compensation co 99.8 5.2E-20 1.1E-24 214.9 2.8 541 22-628 401-964 (1282)
99 KOG0950 DNA polymerase theta/e 99.8 1.8E-18 4E-23 205.8 15.1 331 26-403 222-613 (1008)
100 KOG0329 ATP-dependent RNA heli 99.7 3.2E-18 6.9E-23 175.9 7.9 276 29-401 66-355 (387)
101 PRK04914 ATP-dependent helicas 99.7 8.3E-17 1.8E-21 200.9 21.9 107 276-401 493-605 (956)
102 KOG0353 ATP-dependent DNA heli 99.7 5E-17 1.1E-21 174.6 15.0 310 28-401 95-467 (695)
103 COG1203 CRISPR-associated heli 99.7 5.3E-17 1.1E-21 201.7 14.1 315 24-400 192-549 (733)
104 PRK13104 secA preprotein trans 99.6 3.4E-16 7.4E-21 190.6 11.7 125 23-148 76-213 (896)
105 KOG0349 Putative DEAD-box RNA 99.6 9.2E-16 2E-20 167.6 13.4 292 70-399 288-613 (725)
106 COG4096 HsdR Type I site-speci 99.6 7.7E-16 1.7E-20 182.2 13.8 367 24-425 162-572 (875)
107 PF00270 DEAD: DEAD/DEAH box h 99.6 2.9E-16 6.3E-21 160.3 6.7 153 29-185 1-167 (169)
108 PRK12906 secA preprotein trans 99.6 1.6E-15 3.4E-20 184.0 13.2 105 276-401 440-553 (796)
109 TIGR00348 hsdR type I site-spe 99.6 3.1E-14 6.7E-19 175.4 20.5 332 29-393 240-639 (667)
110 PRK12904 preprotein translocas 99.6 3.8E-15 8.1E-20 181.5 12.1 123 25-148 77-212 (830)
111 KOG0949 Predicted helicase, DE 99.6 1.5E-14 3.2E-19 171.5 16.0 164 25-191 509-684 (1330)
112 COG1198 PriA Primosomal protei 99.5 3E-14 6.6E-19 172.3 13.3 156 24-187 195-367 (730)
113 KOG0953 Mitochondrial RNA heli 99.5 2.3E-13 4.9E-18 154.1 16.3 279 42-401 191-477 (700)
114 cd00268 DEADc DEAD-box helicas 99.5 1.9E-14 4.1E-19 152.0 7.1 151 28-180 22-185 (203)
115 PLN03142 Probable chromatin-re 99.4 6.6E-13 1.4E-17 166.9 15.5 108 276-403 487-601 (1033)
116 PRK13107 preprotein translocas 99.4 5E-13 1.1E-17 162.7 13.3 80 258-344 435-514 (908)
117 PRK12899 secA preprotein trans 99.4 2.4E-12 5.2E-17 157.0 15.9 122 26-148 89-226 (970)
118 COG1110 Reverse gyrase [DNA re 99.4 7.5E-12 1.6E-16 150.7 16.2 274 26-358 81-419 (1187)
119 KOG1123 RNA polymerase II tran 99.4 1.2E-11 2.7E-16 138.1 16.2 317 26-401 301-653 (776)
120 cd00046 DEXDc DEAD-like helica 99.3 2.1E-12 4.5E-17 125.9 6.7 134 43-179 1-144 (144)
121 smart00487 DEXDc DEAD-like hel 99.3 3.6E-12 7.8E-17 132.1 8.5 155 25-180 6-171 (201)
122 TIGR01407 dinG_rel DnaQ family 99.3 3.7E-11 7.9E-16 152.7 15.2 130 258-397 659-811 (850)
123 PF04408 HA2: Helicase associa 99.2 3.2E-13 6.8E-18 126.6 -3.7 70 455-530 1-70 (102)
124 TIGR02562 cas3_yersinia CRISPR 99.2 3.5E-10 7.5E-15 139.3 21.2 251 114-392 563-882 (1110)
125 cd00079 HELICc Helicase superf 99.2 2.2E-11 4.7E-16 118.5 8.5 101 276-396 28-130 (131)
126 PF04851 ResIII: Type III rest 99.2 1.3E-11 2.8E-16 127.3 7.1 148 26-180 2-183 (184)
127 TIGR00631 uvrb excinuclease AB 99.2 5.2E-11 1.1E-15 145.6 11.4 110 276-400 442-552 (655)
128 PF00271 Helicase_C: Helicase 99.2 1.4E-11 3.1E-16 109.4 4.6 72 301-390 6-78 (78)
129 PRK05298 excinuclease ABC subu 99.1 8.1E-11 1.8E-15 144.8 9.5 110 276-400 446-556 (652)
130 smart00847 HA2 Helicase associ 99.1 4.4E-12 9.5E-17 116.6 -2.3 85 455-546 1-87 (92)
131 PRK12900 secA preprotein trans 99.1 2E-10 4.4E-15 140.8 11.2 119 258-402 584-712 (1025)
132 KOG4150 Predicted ATP-dependen 99.1 3.9E-10 8.5E-15 127.5 10.9 316 28-396 287-635 (1034)
133 PF07652 Flavi_DEAD: Flaviviru 99.1 1.7E-10 3.6E-15 112.5 6.4 132 40-180 2-137 (148)
134 KOG0385 Chromatin remodeling c 99.0 3.1E-09 6.8E-14 124.8 15.8 351 26-404 166-602 (971)
135 PRK12326 preprotein translocas 99.0 8.1E-10 1.8E-14 132.2 11.1 122 26-148 75-209 (764)
136 smart00490 HELICc helicase sup 99.0 6.9E-10 1.5E-14 98.4 6.2 70 302-389 11-81 (82)
137 KOG0951 RNA helicase BRR2, DEA 99.0 1.5E-09 3.4E-14 132.5 9.7 329 29-412 1145-1508(1674)
138 COG0556 UvrB Helicase subunit 98.9 9E-09 2E-13 117.2 13.5 108 277-399 447-555 (663)
139 KOG0387 Transcription-coupled 98.9 1.7E-08 3.6E-13 119.5 15.9 127 258-404 532-661 (923)
140 PRK07246 bifunctional ATP-depe 98.9 3E-08 6.5E-13 124.9 19.1 128 257-397 632-780 (820)
141 PF02399 Herpes_ori_bp: Origin 98.9 1.7E-08 3.7E-13 121.9 15.9 327 40-403 47-390 (824)
142 PRK13103 secA preprotein trans 98.9 3.9E-09 8.5E-14 129.3 10.4 124 24-148 77-213 (913)
143 COG4889 Predicted helicase [Ge 98.8 5.5E-09 1.2E-13 123.4 8.6 100 278-395 462-578 (1518)
144 PRK08074 bifunctional ATP-depe 98.8 9.7E-08 2.1E-12 122.4 17.3 134 257-397 736-890 (928)
145 PRK12903 secA preprotein trans 98.7 5E-08 1.1E-12 118.7 12.8 114 259-399 413-537 (925)
146 CHL00122 secA preprotein trans 98.7 3.2E-08 7E-13 120.9 11.3 123 25-148 72-207 (870)
147 PRK14873 primosome assembly pr 98.7 6.4E-08 1.4E-12 118.5 10.9 132 45-187 163-311 (665)
148 KOG0390 DNA repair protein, SN 98.6 1.7E-06 3.6E-11 105.3 21.0 106 281-402 599-708 (776)
149 PRK12902 secA preprotein trans 98.5 6E-07 1.3E-11 109.9 14.1 125 23-148 79-216 (939)
150 KOG0384 Chromodomain-helicase 98.5 3.5E-07 7.5E-12 112.9 10.1 132 276-427 699-835 (1373)
151 KOG1000 Chromatin remodeling p 98.3 1.5E-05 3.2E-10 90.5 17.5 74 276-351 492-568 (689)
152 KOG1677 CCCH-type Zn-finger pr 98.3 4.3E-07 9.4E-12 103.7 4.9 60 732-791 127-204 (332)
153 KOG1040 Polyadenylation factor 98.3 4.1E-07 8.9E-12 100.9 3.5 71 718-788 58-129 (325)
154 KOG0389 SNF2 family DNA-depend 98.1 0.0001 2.2E-09 88.2 18.9 112 276-404 777-891 (941)
155 KOG0392 SNF2 family DNA-depend 98.0 0.0001 2.3E-09 91.4 16.4 112 276-403 1340-1456(1549)
156 PF00176 SNF2_N: SNF2 family N 97.9 2.1E-05 4.5E-10 87.9 7.2 142 41-189 24-182 (299)
157 COG0610 Type I site-specific r 97.9 3.4E-05 7.4E-10 98.9 9.9 132 43-179 274-413 (962)
158 PF00642 zf-CCCH: Zinc finger 97.8 5.1E-06 1.1E-10 58.0 0.2 24 736-759 2-26 (27)
159 TIGR00596 rad1 DNA repair prot 97.8 0.00012 2.7E-09 91.5 12.1 69 112-181 6-74 (814)
160 PF10354 DUF2431: Domain of un 97.8 2.1E-05 4.5E-10 80.4 4.1 145 825-973 1-158 (166)
161 TIGR03117 cas_csf4 CRISPR-asso 97.7 4.3E-05 9.2E-10 93.0 7.1 56 33-88 7-66 (636)
162 COG5063 CTH1 CCCH-type Zn-fing 97.7 2E-05 4.3E-10 84.2 3.6 101 736-837 229-346 (351)
163 PF00642 zf-CCCH: Zinc finger 97.7 7.2E-06 1.6E-10 57.2 0.2 26 763-788 2-27 (27)
164 PF13401 AAA_22: AAA domain; P 97.7 1.8E-05 4E-10 77.0 2.5 116 40-178 2-125 (131)
165 KOG1763 Uncharacterized conser 97.7 5.8E-06 1.3E-10 87.6 -1.4 56 735-790 90-192 (343)
166 COG5084 YTH1 Cleavage and poly 97.6 7.5E-05 1.6E-09 81.2 5.9 55 734-788 101-158 (285)
167 smart00356 ZnF_C3H1 zinc finge 97.6 4.1E-05 8.9E-10 53.3 2.1 24 736-759 3-26 (27)
168 PF13604 AAA_30: AAA domain; P 97.5 3.7E-05 8.1E-10 81.0 2.0 60 28-87 2-65 (196)
169 smart00489 DEXDc3 DEAD-like he 97.4 0.00018 3.9E-09 80.4 6.4 36 29-64 10-49 (289)
170 smart00488 DEXDc2 DEAD-like he 97.4 0.00018 3.9E-09 80.4 6.4 36 29-64 10-49 (289)
171 PRK12901 secA preprotein trans 97.4 0.00031 6.7E-09 87.6 8.7 116 258-399 614-739 (1112)
172 KOG1492 C3H1-type Zn-finger pr 97.4 7.8E-05 1.7E-09 75.9 2.7 56 730-787 226-282 (377)
173 KOG1492 C3H1-type Zn-finger pr 97.4 6.5E-05 1.4E-09 76.4 2.1 57 737-795 206-263 (377)
174 PF02562 PhoH: PhoH-like prote 97.4 0.00021 4.6E-09 75.2 6.0 51 27-77 4-58 (205)
175 PF00448 SRP54: SRP54-type pro 97.4 8.9E-05 1.9E-09 78.0 2.8 124 43-185 2-131 (196)
176 PRK12723 flagellar biosynthesi 97.3 0.00042 9E-09 80.2 7.7 126 42-191 174-309 (388)
177 KOG0386 Chromatin remodeling c 97.3 0.00028 6.1E-09 86.5 6.1 108 276-403 726-840 (1157)
178 KOG2494 C3H1-type Zn-finger pr 97.3 7E-05 1.5E-09 81.5 0.7 53 736-790 36-95 (331)
179 PF13245 AAA_19: Part of AAA d 97.2 0.00019 4.2E-09 63.4 2.4 51 38-88 6-62 (76)
180 PRK10875 recD exonuclease V su 97.2 0.00024 5.1E-09 86.9 3.9 136 29-178 154-301 (615)
181 TIGR01447 recD exodeoxyribonuc 97.2 0.0003 6.4E-09 85.8 4.7 133 30-176 148-293 (586)
182 smart00356 ZnF_C3H1 zinc finge 97.1 0.00033 7.2E-09 48.7 2.4 25 763-788 3-27 (27)
183 PRK10536 hypothetical protein; 97.1 0.00046 9.9E-09 74.8 4.3 53 26-78 58-114 (262)
184 COG1419 FlhF Flagellar GTP-bin 97.1 0.0011 2.4E-08 75.7 7.1 126 42-191 203-335 (407)
185 KOG1803 DNA helicase [Replicat 97.0 0.0007 1.5E-08 79.6 5.5 62 28-89 186-250 (649)
186 COG5252 Uncharacterized conser 97.0 0.00016 3.6E-09 74.4 0.1 55 734-788 82-175 (299)
187 TIGR01448 recD_rel helicase, p 97.0 0.00058 1.2E-08 85.6 4.4 128 25-178 321-452 (720)
188 PRK14722 flhF flagellar biosyn 96.9 0.00095 2.1E-08 76.7 5.4 121 41-185 136-263 (374)
189 PF09848 DUF2075: Uncharacteri 96.9 0.0008 1.7E-08 77.6 4.8 92 43-152 2-97 (352)
190 COG1199 DinG Rad3-related DNA 96.9 0.0064 1.4E-07 76.1 13.1 135 256-397 462-614 (654)
191 PRK11747 dinG ATP-dependent DN 96.9 0.0065 1.4E-07 76.2 12.6 132 257-397 519-671 (697)
192 KOG1595 CCCH-type Zn-finger pr 96.8 0.0013 2.7E-08 76.4 5.3 57 731-791 230-294 (528)
193 PRK06526 transposase; Provisio 96.7 0.0013 2.9E-08 72.0 4.2 26 37-62 93-118 (254)
194 TIGR02768 TraA_Ti Ti-type conj 96.7 0.0018 3.9E-08 81.5 5.9 122 25-176 350-474 (744)
195 PF13872 AAA_34: P-loop contai 96.7 0.0077 1.7E-07 66.5 9.8 163 14-179 24-220 (303)
196 cd00009 AAA The AAA+ (ATPases 96.7 0.0037 8E-08 60.9 6.5 31 33-63 8-40 (151)
197 smart00382 AAA ATPases associa 96.6 0.0016 3.4E-08 62.9 3.7 36 42-77 2-39 (148)
198 KOG2333 Uncharacterized conser 96.6 0.0014 3.1E-08 74.6 3.4 51 736-786 75-136 (614)
199 PRK15483 type III restriction- 96.5 0.0033 7.1E-08 79.3 6.4 134 43-181 60-240 (986)
200 KOG0952 DNA/RNA helicase MER3/ 96.5 0.00052 1.1E-08 84.6 -0.6 165 25-190 910-1105(1230)
201 PRK11889 flhF flagellar biosyn 96.5 0.0041 8.9E-08 71.3 6.5 120 43-183 242-366 (436)
202 PF13307 Helicase_C_2: Helicas 96.5 0.0022 4.7E-08 65.8 4.0 121 276-398 9-146 (167)
203 PRK13889 conjugal transfer rel 96.5 0.0025 5.4E-08 81.5 5.3 124 25-178 344-470 (988)
204 KOG0391 SNF2 family DNA-depend 96.5 0.0094 2E-07 74.2 9.7 111 276-403 1276-1389(1958)
205 PF13086 AAA_11: AAA domain; P 96.5 0.0019 4.1E-08 69.0 3.3 63 28-90 2-75 (236)
206 KOG1040 Polyadenylation factor 96.4 0.0017 3.7E-08 72.6 2.7 59 734-794 103-163 (325)
207 COG5084 YTH1 Cleavage and poly 96.3 0.0077 1.7E-07 65.9 7.0 61 736-796 133-197 (285)
208 PRK05703 flhF flagellar biosyn 96.3 0.0073 1.6E-07 71.1 7.3 124 42-189 221-352 (424)
209 PRK08181 transposase; Validate 96.3 0.008 1.7E-07 66.4 7.1 22 38-59 102-123 (269)
210 PF05970 PIF1: PIF1-like helic 96.3 0.0042 9.2E-08 71.9 5.1 57 28-84 2-66 (364)
211 PRK04296 thymidine kinase; Pro 96.3 0.0045 9.8E-08 64.9 4.6 35 42-76 2-38 (190)
212 PF14608 zf-CCCH_2: Zinc finge 96.2 0.0023 4.9E-08 40.8 1.3 11 776-786 8-18 (19)
213 COG5063 CTH1 CCCH-type Zn-fing 96.2 0.0044 9.5E-08 66.7 3.9 56 733-788 270-338 (351)
214 PRK14974 cell division protein 96.1 0.014 3E-07 66.5 8.1 120 43-180 141-265 (336)
215 PRK12727 flagellar biosynthesi 96.1 0.009 1.9E-07 71.0 6.6 126 40-189 348-479 (559)
216 PF06862 DUF1253: Protein of u 96.1 0.11 2.4E-06 60.9 15.0 111 276-403 300-417 (442)
217 PRK12724 flagellar biosynthesi 96.0 0.0094 2E-07 69.2 5.9 124 42-190 223-358 (432)
218 KOG2340 Uncharacterized conser 95.9 0.033 7.1E-07 64.7 9.6 109 277-402 553-669 (698)
219 TIGR00604 rad3 DNA repair heli 95.8 0.016 3.4E-07 73.1 7.5 96 256-356 505-615 (705)
220 PF13173 AAA_14: AAA domain 95.8 0.0095 2.1E-07 58.2 4.3 38 137-178 61-98 (128)
221 PF05127 Helicase_RecD: Helica 95.8 0.0026 5.7E-08 65.4 0.3 113 46-179 1-123 (177)
222 PF14608 zf-CCCH_2: Zinc finge 95.8 0.0057 1.2E-07 39.0 1.7 19 739-759 1-19 (19)
223 PRK12726 flagellar biosynthesi 95.8 0.014 3.1E-07 66.7 6.1 128 41-189 205-337 (407)
224 PRK08727 hypothetical protein; 95.8 0.012 2.6E-07 63.8 5.3 17 43-59 42-58 (233)
225 PRK14723 flhF flagellar biosyn 95.8 0.017 3.6E-07 71.9 7.0 122 42-187 185-313 (767)
226 PRK06835 DNA replication prote 95.8 0.019 4.2E-07 65.3 7.1 18 41-58 182-199 (329)
227 PRK13826 Dtr system oriT relax 95.6 0.012 2.7E-07 75.8 5.4 124 25-178 379-505 (1102)
228 PRK07003 DNA polymerase III su 95.6 0.025 5.4E-07 69.7 7.7 38 137-176 119-156 (830)
229 PRK14721 flhF flagellar biosyn 95.5 0.022 4.8E-07 66.6 6.4 124 41-188 190-320 (420)
230 KOG1677 CCCH-type Zn-finger pr 95.5 0.013 2.8E-07 67.1 4.5 55 738-792 87-161 (332)
231 KOG1802 RNA helicase nonsense 95.5 0.013 2.9E-07 69.3 4.5 66 25-90 407-476 (935)
232 PRK06893 DNA replication initi 95.5 0.016 3.5E-07 62.6 4.9 18 42-59 39-56 (229)
233 PRK05642 DNA replication initi 95.5 0.018 3.8E-07 62.5 5.2 17 43-59 46-62 (234)
234 KOG2185 Predicted RNA-processi 95.5 0.0054 1.2E-07 68.4 1.1 22 861-882 267-288 (486)
235 TIGR02640 gas_vesic_GvpN gas v 95.4 0.018 3.8E-07 63.6 5.1 38 27-64 6-43 (262)
236 KOG2185 Predicted RNA-processi 95.4 0.0054 1.2E-07 68.4 0.7 25 736-760 139-163 (486)
237 TIGR00376 DNA helicase, putati 95.3 0.018 3.9E-07 71.4 5.1 65 26-90 156-223 (637)
238 KOG4791 Uncharacterized conser 95.3 0.0052 1.1E-07 69.5 0.4 48 737-788 32-84 (667)
239 PF07517 SecA_DEAD: SecA DEAD- 95.3 0.0054 1.2E-07 67.4 0.4 127 26-153 74-213 (266)
240 PRK14956 DNA polymerase III su 95.2 0.039 8.5E-07 65.3 7.3 40 137-180 121-160 (484)
241 PRK08116 hypothetical protein; 95.1 0.053 1.2E-06 60.1 7.7 18 43-60 115-132 (268)
242 COG1875 NYN ribonuclease and A 95.1 0.033 7.2E-07 62.5 5.7 130 25-176 226-385 (436)
243 PRK07952 DNA replication prote 95.0 0.046 9.9E-07 59.6 6.7 52 137-189 162-214 (244)
244 KOG1595 CCCH-type Zn-finger pr 95.0 0.016 3.5E-07 67.5 3.2 49 736-788 200-259 (528)
245 PRK00411 cdc6 cell division co 95.0 0.073 1.6E-06 62.3 8.8 22 43-64 56-77 (394)
246 PF01695 IstB_IS21: IstB-like 94.9 0.021 4.6E-07 59.2 3.6 21 39-59 44-64 (178)
247 COG1219 ClpX ATP-dependent pro 94.9 0.022 4.7E-07 62.7 3.6 27 122-148 145-173 (408)
248 PF05729 NACHT: NACHT domain 94.9 0.029 6.3E-07 56.4 4.4 51 139-189 83-140 (166)
249 PRK14958 DNA polymerase III su 94.9 0.058 1.3E-06 65.1 7.6 38 137-176 119-156 (509)
250 PRK08084 DNA replication initi 94.8 0.029 6.3E-07 60.9 4.5 19 42-60 45-63 (235)
251 PRK14949 DNA polymerase III su 94.8 0.028 6.1E-07 70.5 4.8 45 137-185 119-163 (944)
252 PF00580 UvrD-helicase: UvrD/R 94.7 0.012 2.7E-07 65.9 1.3 117 28-147 1-125 (315)
253 TIGR03420 DnaA_homol_Hda DnaA 94.7 0.041 8.9E-07 58.9 5.4 22 41-62 37-58 (226)
254 PF12340 DUF3638: Protein of u 94.7 0.062 1.3E-06 57.5 6.3 102 24-127 20-144 (229)
255 PHA00729 NTP-binding motif con 94.6 0.058 1.3E-06 57.7 6.1 25 35-59 8-34 (226)
256 TIGR03015 pepcterm_ATPase puta 94.6 0.035 7.5E-07 61.2 4.6 23 43-65 44-66 (269)
257 PRK12323 DNA polymerase III su 94.6 0.062 1.3E-06 65.5 6.9 38 137-176 124-161 (700)
258 COG0653 SecA Preprotein transl 94.6 0.071 1.5E-06 66.2 7.4 118 259-394 416-538 (822)
259 PRK14960 DNA polymerase III su 94.6 0.069 1.5E-06 65.2 7.2 38 137-176 118-155 (702)
260 PRK14964 DNA polymerase III su 94.6 0.069 1.5E-06 63.8 7.1 39 136-176 115-153 (491)
261 KOG0989 Replication factor C, 94.5 0.03 6.6E-07 61.4 3.6 36 30-65 39-80 (346)
262 COG2804 PulE Type II secretory 94.5 0.033 7.2E-07 65.4 4.1 45 23-67 237-283 (500)
263 KOG1002 Nucleotide excision re 94.5 0.062 1.3E-06 61.9 6.0 117 26-147 183-326 (791)
264 PF00004 AAA: ATPase family as 94.5 0.022 4.8E-07 55.1 2.3 17 45-61 1-17 (132)
265 TIGR02881 spore_V_K stage V sp 94.5 0.039 8.4E-07 60.9 4.5 18 43-60 43-60 (261)
266 PTZ00112 origin recognition co 94.5 0.09 2E-06 65.5 7.8 40 24-63 755-802 (1164)
267 COG1444 Predicted P-loop ATPas 94.4 0.14 2.9E-06 63.5 9.0 135 25-179 209-356 (758)
268 KOG0388 SNF2 family DNA-depend 94.3 0.088 1.9E-06 63.0 7.1 112 276-404 1044-1157(1185)
269 PRK00149 dnaA chromosomal repl 94.3 0.11 2.5E-06 61.9 8.3 17 43-59 149-165 (450)
270 PHA03333 putative ATPase subun 94.2 0.15 3.1E-06 62.3 8.7 140 41-191 186-344 (752)
271 PRK09111 DNA polymerase III su 94.1 0.14 3.1E-06 62.8 8.7 39 136-176 131-169 (598)
272 PRK06731 flhF flagellar biosyn 94.1 0.11 2.4E-06 57.5 7.0 125 42-188 75-205 (270)
273 PRK10416 signal recognition pa 94.1 0.12 2.6E-06 58.7 7.4 123 42-182 114-247 (318)
274 PRK07764 DNA polymerase III su 94.1 0.085 1.8E-06 67.0 6.9 39 136-176 119-157 (824)
275 PRK06995 flhF flagellar biosyn 94.1 0.087 1.9E-06 62.7 6.6 123 41-187 255-384 (484)
276 PRK07994 DNA polymerase III su 94.1 0.071 1.5E-06 65.6 6.0 38 136-175 118-155 (647)
277 TIGR03499 FlhF flagellar biosy 94.1 0.053 1.1E-06 60.6 4.4 52 42-93 194-251 (282)
278 PRK06921 hypothetical protein; 94.0 0.1 2.2E-06 57.7 6.6 20 41-60 116-135 (266)
279 PRK00771 signal recognition pa 94.0 0.081 1.7E-06 62.5 5.9 118 43-180 96-218 (437)
280 PRK14969 DNA polymerase III su 94.0 0.12 2.7E-06 62.7 7.7 39 136-176 118-156 (527)
281 PRK09183 transposase/IS protei 93.9 0.097 2.1E-06 57.7 6.1 24 39-62 99-122 (259)
282 PRK14086 dnaA chromosomal repl 93.8 0.17 3.7E-06 61.7 8.4 17 43-59 315-331 (617)
283 PRK14961 DNA polymerase III su 93.8 0.087 1.9E-06 61.1 5.8 21 44-64 40-60 (363)
284 PRK14957 DNA polymerase III su 93.8 0.12 2.6E-06 62.6 7.1 39 136-176 118-156 (546)
285 PRK09112 DNA polymerase III su 93.8 0.086 1.9E-06 60.7 5.5 38 137-176 141-178 (351)
286 TIGR00362 DnaA chromosomal rep 93.8 0.067 1.4E-06 63.0 4.8 17 43-59 137-153 (405)
287 PF01637 Arch_ATPase: Archaeal 93.7 0.12 2.7E-06 54.9 6.3 34 33-66 9-44 (234)
288 PRK12377 putative replication 93.6 0.19 4E-06 55.0 7.6 18 42-59 101-118 (248)
289 PRK08903 DnaA regulatory inact 93.6 0.11 2.4E-06 55.9 5.8 21 41-61 41-61 (227)
290 PRK14088 dnaA chromosomal repl 93.5 0.11 2.5E-06 61.7 6.2 17 43-59 131-147 (440)
291 PF05621 TniB: Bacterial TniB 93.4 0.091 2E-06 58.4 4.8 53 43-95 62-123 (302)
292 PRK08691 DNA polymerase III su 93.4 0.092 2E-06 64.7 5.2 39 136-176 118-156 (709)
293 TIGR02928 orc1/cdc6 family rep 93.3 0.4 8.7E-06 55.4 10.2 24 445-468 326-349 (365)
294 PRK11331 5-methylcytosine-spec 93.2 0.13 2.8E-06 60.4 5.8 33 31-63 183-215 (459)
295 PRK12422 chromosomal replicati 93.2 0.12 2.6E-06 61.5 5.6 17 43-59 142-158 (445)
296 PRK09087 hypothetical protein; 93.1 0.18 4E-06 54.4 6.6 19 42-60 44-62 (226)
297 PF01443 Viral_helicase1: Vira 93.1 0.059 1.3E-06 57.9 2.8 22 45-66 1-22 (234)
298 PRK14087 dnaA chromosomal repl 93.1 0.1 2.3E-06 62.1 5.1 17 43-59 142-158 (450)
299 PF13177 DNA_pol3_delta2: DNA 93.1 0.086 1.9E-06 53.8 3.8 41 137-179 102-142 (162)
300 KOG1805 DNA replication helica 93.1 0.11 2.4E-06 64.6 5.1 119 26-148 668-807 (1100)
301 PRK14952 DNA polymerase III su 93.1 0.13 2.8E-06 62.9 5.8 39 136-176 117-155 (584)
302 TIGR02760 TraI_TIGR conjugativ 93.0 0.083 1.8E-06 73.1 4.5 136 25-178 427-566 (1960)
303 TIGR00064 ftsY signal recognit 93.0 0.18 3.8E-06 56.1 6.3 123 43-184 73-207 (272)
304 PRK04841 transcriptional regul 93.0 0.17 3.7E-06 65.8 7.3 28 40-67 30-57 (903)
305 COG5152 Uncharacterized conser 93.0 0.045 9.8E-07 55.5 1.4 28 733-760 137-165 (259)
306 KOG4791 Uncharacterized conser 92.9 0.052 1.1E-06 61.7 2.0 59 728-788 52-141 (667)
307 PF05496 RuvB_N: Holliday junc 92.9 0.079 1.7E-06 56.4 3.2 16 43-58 51-66 (233)
308 PRK12402 replication factor C 92.9 0.15 3.2E-06 58.2 5.7 31 34-64 26-58 (337)
309 PRK06645 DNA polymerase III su 92.9 0.16 3.4E-06 61.2 6.0 33 32-64 26-65 (507)
310 PF00308 Bac_DnaA: Bacterial d 92.8 0.095 2.1E-06 56.3 3.7 15 43-57 35-49 (219)
311 COG0466 Lon ATP-dependent Lon 92.7 0.31 6.8E-06 59.3 8.1 150 27-211 327-501 (782)
312 CHL00181 cbbX CbbX; Provisiona 92.7 0.15 3.2E-06 57.2 5.2 19 43-61 60-78 (287)
313 COG0553 HepA Superfamily II DN 92.6 0.23 5.1E-06 64.1 7.7 109 278-403 713-824 (866)
314 PRK14951 DNA polymerase III su 92.5 0.16 3.5E-06 62.4 5.6 38 137-176 124-161 (618)
315 COG1702 PhoH Phosphate starvat 92.4 0.098 2.1E-06 58.6 3.3 51 26-76 127-181 (348)
316 TIGR03117 cas_csf4 CRISPR-asso 92.3 0.91 2E-05 56.1 11.6 72 276-351 470-556 (636)
317 PRK08939 primosomal protein Dn 92.2 0.39 8.4E-06 54.3 7.8 21 42-62 156-176 (306)
318 TIGR01425 SRP54_euk signal rec 92.1 0.33 7.2E-06 57.0 7.3 128 43-189 101-236 (429)
319 PRK07133 DNA polymerase III su 92.0 0.29 6.2E-06 60.9 7.0 19 44-62 42-60 (725)
320 PRK14962 DNA polymerase III su 91.9 0.28 6.1E-06 58.7 6.6 20 44-63 38-57 (472)
321 PRK14959 DNA polymerase III su 91.8 0.38 8.2E-06 59.0 7.5 21 43-63 39-59 (624)
322 PRK10436 hypothetical protein; 91.7 0.2 4.2E-06 59.8 4.9 41 24-64 198-240 (462)
323 PRK14955 DNA polymerase III su 91.7 0.33 7.1E-06 57.0 6.8 20 44-63 40-59 (397)
324 COG3587 Restriction endonuclea 91.7 0.15 3.2E-06 62.7 3.9 55 324-396 480-537 (985)
325 cd01120 RecA-like_NTPases RecA 91.6 0.18 3.8E-06 50.3 3.9 23 44-66 1-23 (165)
326 COG2256 MGS1 ATPase related to 91.6 0.22 4.8E-06 56.9 4.9 35 137-179 104-140 (436)
327 KOG1132 Helicase of the DEAD s 91.5 0.22 4.8E-06 61.5 5.1 38 111-148 220-258 (945)
328 COG1484 DnaC DNA replication p 91.5 0.2 4.2E-06 55.1 4.4 24 36-59 99-122 (254)
329 PF07728 AAA_5: AAA domain (dy 91.5 0.096 2.1E-06 51.6 1.7 22 44-65 1-22 (139)
330 PRK14712 conjugal transfer nic 91.3 0.18 3.9E-06 67.5 4.4 58 27-84 835-900 (1623)
331 PRK14950 DNA polymerase III su 91.3 0.22 4.8E-06 61.4 5.0 21 43-63 39-59 (585)
332 PRK08451 DNA polymerase III su 91.3 0.52 1.1E-05 57.0 7.9 39 136-176 116-154 (535)
333 TIGR01650 PD_CobS cobaltochela 91.2 0.6 1.3E-05 52.8 7.9 37 33-69 55-91 (327)
334 PLN03025 replication factor C 91.2 0.37 8E-06 54.8 6.3 21 43-63 35-55 (319)
335 COG2255 RuvB Holliday junction 91.1 0.19 4E-06 55.0 3.5 15 43-57 53-67 (332)
336 PRK13894 conjugal transfer ATP 91.1 0.16 3.5E-06 57.7 3.2 33 31-63 136-169 (319)
337 TIGR02880 cbbX_cfxQ probable R 91.0 0.24 5.2E-06 55.4 4.5 17 43-59 59-75 (284)
338 PRK14948 DNA polymerase III su 90.9 0.32 7E-06 60.1 5.9 22 43-64 39-60 (620)
339 TIGR02760 TraI_TIGR conjugativ 90.9 0.16 3.5E-06 70.4 3.5 60 26-85 1018-1085(1960)
340 PRK14953 DNA polymerase III su 90.8 0.55 1.2E-05 56.5 7.5 19 44-62 40-58 (486)
341 PF00931 NB-ARC: NB-ARC domain 90.8 0.28 6E-06 54.5 4.8 61 33-93 6-75 (287)
342 PRK05563 DNA polymerase III su 90.7 0.51 1.1E-05 57.8 7.3 21 43-63 39-59 (559)
343 PRK05896 DNA polymerase III su 90.7 0.27 5.9E-06 59.9 4.9 21 43-63 39-59 (605)
344 TIGR00604 rad3 DNA repair heli 90.7 0.2 4.2E-06 63.4 3.7 59 27-85 10-77 (705)
345 PHA02533 17 large terminase pr 90.6 0.84 1.8E-05 55.5 9.0 157 24-188 56-219 (534)
346 PHA02544 44 clamp loader, smal 90.6 0.52 1.1E-05 53.4 6.8 19 44-62 45-63 (316)
347 PF00437 T2SE: Type II/IV secr 90.6 0.12 2.6E-06 57.2 1.6 25 40-64 125-149 (270)
348 PRK14965 DNA polymerase III su 90.5 0.39 8.4E-06 59.1 6.0 39 136-176 118-156 (576)
349 COG1474 CDC6 Cdc6-related prot 90.4 0.71 1.5E-05 53.5 7.7 39 25-64 18-63 (366)
350 PF03266 NTPase_1: NTPase; In 90.4 0.26 5.6E-06 50.7 3.7 22 44-65 1-22 (168)
351 COG2909 MalT ATP-dependent tra 90.4 0.71 1.5E-05 57.4 7.9 34 31-64 23-59 (894)
352 cd01130 VirB11-like_ATPase Typ 90.3 0.17 3.8E-06 52.7 2.5 32 30-61 12-44 (186)
353 PRK13833 conjugal transfer pro 90.3 0.21 4.5E-06 56.7 3.2 33 30-62 131-164 (323)
354 PRK13342 recombination factor 90.3 0.41 9E-06 56.5 5.9 20 43-62 37-56 (413)
355 cd03115 SRP The signal recogni 90.3 0.51 1.1E-05 48.4 5.8 21 44-64 2-22 (173)
356 TIGR02782 TrbB_P P-type conjug 90.3 0.18 3.9E-06 56.8 2.6 29 35-63 125-153 (299)
357 PRK13851 type IV secretion sys 90.3 0.2 4.3E-06 57.4 3.0 26 38-63 158-183 (344)
358 PRK10867 signal recognition pa 90.2 0.4 8.6E-06 56.6 5.6 119 43-179 101-225 (433)
359 PRK07471 DNA polymerase III su 90.2 0.47 1E-05 54.9 6.0 41 137-179 141-181 (365)
360 TIGR00678 holB DNA polymerase 90.2 0.39 8.4E-06 50.0 4.9 30 34-63 3-35 (188)
361 PRK13709 conjugal transfer nic 90.1 0.29 6.3E-06 66.4 4.8 122 26-178 966-1099(1747)
362 COG2805 PilT Tfp pilus assembl 90.1 0.19 4.1E-06 55.4 2.4 25 41-65 124-148 (353)
363 cd01124 KaiC KaiC is a circadi 90.1 0.18 3.8E-06 52.2 2.2 44 44-88 1-46 (187)
364 PRK05707 DNA polymerase III su 90.0 0.32 6.9E-06 55.5 4.4 36 27-62 3-42 (328)
365 TIGR02533 type_II_gspE general 89.9 0.3 6.4E-06 58.8 4.3 40 24-63 222-263 (486)
366 COG5152 Uncharacterized conser 89.9 0.11 2.5E-06 52.7 0.5 26 764-789 141-166 (259)
367 KOG2004 Mitochondrial ATP-depe 89.9 1 2.3E-05 54.8 8.5 106 26-161 414-531 (906)
368 COG1618 Predicted nucleotide k 89.8 0.25 5.3E-06 49.8 2.8 21 43-63 6-26 (179)
369 TIGR02688 conserved hypothetic 89.7 0.32 6.9E-06 56.6 4.1 23 37-59 204-226 (449)
370 PRK04195 replication factor C 89.6 0.66 1.4E-05 55.9 6.9 26 42-67 39-64 (482)
371 KOG1763 Uncharacterized conser 89.3 0.1 2.2E-06 56.3 -0.3 30 760-790 88-117 (343)
372 TIGR03345 VI_ClpV1 type VI sec 89.3 0.47 1E-05 61.0 5.6 16 44-59 598-613 (852)
373 cd00267 ABC_ATPase ABC (ATP-bi 89.3 0.3 6.5E-06 49.3 3.1 23 39-61 22-44 (157)
374 PRK14963 DNA polymerase III su 89.2 0.82 1.8E-05 55.2 7.3 20 44-63 38-57 (504)
375 KOG0391 SNF2 family DNA-depend 89.1 0.66 1.4E-05 58.8 6.3 116 28-147 616-747 (1958)
376 PRK07940 DNA polymerase III su 89.0 0.92 2E-05 53.1 7.3 40 136-178 116-155 (394)
377 PRK13900 type IV secretion sys 89.0 0.28 6E-06 56.1 2.9 25 38-62 156-180 (332)
378 PF13555 AAA_29: P-loop contai 89.0 0.16 3.4E-06 43.0 0.7 19 42-60 23-41 (62)
379 PRK11747 dinG ATP-dependent DN 88.9 0.3 6.5E-06 61.5 3.5 59 26-84 24-94 (697)
380 PRK11823 DNA repair protein Ra 88.9 0.42 9.1E-06 56.9 4.4 46 41-87 79-126 (446)
381 COG0556 UvrB Helicase subunit 88.9 0.55 1.2E-05 55.2 5.2 76 29-108 14-94 (663)
382 PRK00440 rfc replication facto 88.8 0.8 1.7E-05 51.7 6.5 20 43-62 39-58 (319)
383 PRK14970 DNA polymerase III su 88.7 0.67 1.4E-05 53.8 5.9 20 43-62 40-59 (367)
384 KOG1039 Predicted E3 ubiquitin 88.6 0.17 3.7E-06 57.3 0.9 23 738-760 9-31 (344)
385 cd03281 ABC_MSH5_euk MutS5 hom 88.6 0.22 4.8E-06 53.2 1.7 21 43-63 30-50 (213)
386 PRK14954 DNA polymerase III su 88.6 0.73 1.6E-05 56.9 6.4 21 43-63 39-59 (620)
387 TIGR00635 ruvB Holliday juncti 88.5 0.48 1E-05 53.4 4.4 30 451-482 270-300 (305)
388 KOG0741 AAA+-type ATPase [Post 88.5 0.71 1.5E-05 54.3 5.7 103 44-182 540-652 (744)
389 TIGR00959 ffh signal recogniti 88.5 0.65 1.4E-05 54.8 5.6 119 43-179 100-224 (428)
390 PTZ00293 thymidine kinase; Pro 88.4 0.23 4.9E-06 52.7 1.6 36 41-76 3-40 (211)
391 PRK13341 recombination factor 88.4 0.76 1.7E-05 57.8 6.4 20 43-62 53-72 (725)
392 TIGR02524 dot_icm_DotB Dot/Icm 88.4 0.26 5.7E-06 56.9 2.2 29 35-63 126-155 (358)
393 cd01129 PulE-GspE PulE/GspE Th 88.3 0.29 6.4E-06 54.1 2.5 39 25-63 61-101 (264)
394 KOG2228 Origin recognition com 88.3 1.9 4E-05 48.5 8.5 123 41-181 48-183 (408)
395 TIGR02397 dnaX_nterm DNA polym 88.2 1.1 2.4E-05 51.4 7.3 19 43-61 37-55 (355)
396 COG1199 DinG Rad3-related DNA 87.7 0.35 7.7E-06 60.6 3.0 61 23-83 11-78 (654)
397 PRK12900 secA preprotein trans 87.7 0.31 6.8E-06 61.8 2.4 116 30-147 139-268 (1025)
398 TIGR02785 addA_Gpos recombinat 87.7 0.16 3.5E-06 67.9 -0.1 129 29-160 3-138 (1232)
399 COG5008 PilU Tfp pilus assembl 87.5 0.38 8.3E-06 51.9 2.6 26 39-64 124-149 (375)
400 COG4962 CpaF Flp pilus assembl 87.4 0.35 7.7E-06 54.4 2.4 48 30-77 160-209 (355)
401 KOG0349 Putative DEAD-box RNA 87.4 0.18 3.9E-06 57.2 0.1 37 28-64 25-61 (725)
402 PRK08769 DNA polymerase III su 87.4 1.1 2.3E-05 51.0 6.3 40 137-178 113-152 (319)
403 cd01393 recA_like RecA is a b 87.2 0.87 1.9E-05 48.8 5.2 25 41-65 18-42 (226)
404 KOG0745 Putative ATP-dependent 87.1 0.44 9.5E-06 54.8 2.9 17 41-57 225-241 (564)
405 PRK05973 replicative DNA helic 87.0 0.52 1.1E-05 51.2 3.3 56 33-89 55-112 (237)
406 PHA03368 DNA packaging termina 86.9 1.5 3.2E-05 53.6 7.4 138 42-191 254-402 (738)
407 PRK00080 ruvB Holliday junctio 86.9 0.46 1E-05 54.3 3.1 32 450-483 290-322 (328)
408 PRK05342 clpX ATP-dependent pr 86.9 0.56 1.2E-05 55.2 3.8 18 43-60 109-126 (412)
409 PHA03311 helicase-primase subu 86.9 0.47 1E-05 58.1 3.2 44 43-89 72-115 (828)
410 PF03354 Terminase_1: Phage Te 86.9 0.55 1.2E-05 56.6 3.8 143 30-178 1-163 (477)
411 PRK06647 DNA polymerase III su 86.8 0.78 1.7E-05 56.2 5.1 21 43-63 39-59 (563)
412 COG0470 HolB ATPase involved i 86.7 0.95 2.1E-05 51.1 5.5 39 136-176 108-146 (325)
413 COG2812 DnaX DNA polymerase II 86.6 0.59 1.3E-05 56.0 3.8 41 136-180 118-158 (515)
414 PRK06964 DNA polymerase III su 86.5 1.4 3.1E-05 50.4 6.7 41 136-178 131-171 (342)
415 KOG1970 Checkpoint RAD17-RFC c 86.0 0.58 1.3E-05 55.4 3.2 46 24-69 82-137 (634)
416 PLN00020 ribulose bisphosphate 86.0 0.54 1.2E-05 53.8 2.9 25 43-67 149-173 (413)
417 cd03247 ABCC_cytochrome_bd The 85.8 0.92 2E-05 46.8 4.4 24 39-62 25-48 (178)
418 PRK10865 protein disaggregatio 85.7 1 2.3E-05 58.0 5.7 132 33-189 578-730 (857)
419 TIGR03689 pup_AAA proteasome A 85.7 0.97 2.1E-05 54.4 5.0 17 43-59 217-233 (512)
420 CHL00176 ftsH cell division pr 85.6 1.1 2.4E-05 55.7 5.6 21 43-63 217-237 (638)
421 TIGR02538 type_IV_pilB type IV 85.6 0.55 1.2E-05 57.7 3.0 40 24-63 296-337 (564)
422 cd01123 Rad51_DMC1_radA Rad51_ 85.6 0.88 1.9E-05 49.0 4.3 26 40-65 17-42 (235)
423 TIGR00763 lon ATP-dependent pr 85.6 0.93 2E-05 58.0 5.1 21 42-62 347-367 (775)
424 KOG4439 RNA polymerase II tran 85.4 0.25 5.3E-06 59.6 -0.2 133 15-147 313-473 (901)
425 PRK11054 helD DNA helicase IV; 85.3 0.53 1.2E-05 58.9 2.7 66 25-92 194-265 (684)
426 TIGR02858 spore_III_AA stage I 85.2 1.2 2.6E-05 49.4 5.1 32 32-63 98-132 (270)
427 PRK14971 DNA polymerase III su 85.2 1.7 3.6E-05 54.0 6.9 24 35-58 29-55 (614)
428 PF00265 TK: Thymidine kinase; 85.1 0.89 1.9E-05 47.1 3.8 35 42-76 1-37 (176)
429 cd01131 PilT Pilus retraction 85.1 0.33 7.2E-06 51.2 0.7 21 43-63 2-22 (198)
430 PRK11034 clpA ATP-dependent Cl 85.0 1 2.2E-05 57.1 4.9 19 44-62 490-508 (758)
431 PRK10787 DNA-binding ATP-depen 84.8 1 2.2E-05 57.4 4.9 33 28-60 327-367 (784)
432 TIGR00767 rho transcription te 84.8 0.51 1.1E-05 54.7 2.0 23 39-61 165-187 (415)
433 cd03228 ABCC_MRP_Like The MRP 84.6 1 2.3E-05 46.1 4.1 24 39-62 25-48 (171)
434 KOG1039 Predicted E3 ubiquitin 84.5 0.33 7.1E-06 55.1 0.3 24 765-789 9-32 (344)
435 cd01121 Sms Sms (bacterial rad 84.4 0.98 2.1E-05 52.4 4.2 35 41-75 81-117 (372)
436 COG0552 FtsY Signal recognitio 84.4 4.4 9.6E-05 45.7 9.0 131 43-191 140-283 (340)
437 PRK06067 flagellar accessory p 84.3 0.84 1.8E-05 49.3 3.4 26 41-66 24-49 (234)
438 KOG2373 Predicted mitochondria 84.3 0.6 1.3E-05 52.1 2.1 26 41-66 272-297 (514)
439 KOG1015 Transcription regulato 84.1 1.8 3.8E-05 54.1 6.1 114 273-401 1139-1277(1567)
440 CHL00095 clpC Clp protease ATP 84.1 1.3 2.9E-05 57.0 5.6 16 44-59 541-556 (821)
441 PRK10919 ATP-dependent DNA hel 84.0 0.61 1.3E-05 58.6 2.4 102 28-147 3-112 (672)
442 PRK08699 DNA polymerase III su 84.0 2.5 5.5E-05 48.2 7.2 34 29-62 3-41 (325)
443 COG0593 DnaA ATPase involved i 84.0 1.7 3.8E-05 50.6 5.9 16 42-57 113-128 (408)
444 TIGR03346 chaperone_ClpB ATP-d 83.9 2.4 5.3E-05 54.8 7.8 20 42-61 194-213 (852)
445 cd03221 ABCF_EF-3 ABCF_EF-3 E 83.8 0.95 2.1E-05 45.1 3.3 22 39-60 23-44 (144)
446 PRK08058 DNA polymerase III su 83.8 1.3 2.8E-05 50.6 4.8 39 136-176 109-147 (329)
447 COG1126 GlnQ ABC-type polar am 83.8 0.39 8.4E-06 50.7 0.5 21 39-59 25-45 (240)
448 cd03282 ABC_MSH4_euk MutS4 hom 83.6 0.46 9.9E-06 50.5 1.0 22 41-62 28-49 (204)
449 TIGR02639 ClpA ATP-dependent C 83.6 1 2.3E-05 57.1 4.3 16 44-59 486-501 (731)
450 PF02367 UPF0079: Uncharacteri 83.5 0.73 1.6E-05 44.8 2.2 46 33-79 6-51 (123)
451 TIGR02525 plasmid_TraJ plasmid 83.5 0.56 1.2E-05 54.4 1.6 23 40-62 147-169 (372)
452 TIGR02788 VirB11 P-type DNA tr 83.5 0.71 1.5E-05 52.3 2.4 25 39-63 141-165 (308)
453 TIGR01241 FtsH_fam ATP-depende 83.4 1.7 3.8E-05 52.5 6.0 21 43-63 89-109 (495)
454 PRK07399 DNA polymerase III su 83.4 3.2 7E-05 47.1 7.7 30 33-62 14-46 (314)
455 PRK06305 DNA polymerase III su 83.1 2.4 5.1E-05 50.7 6.8 21 43-63 40-60 (451)
456 cd03216 ABC_Carb_Monos_I This 82.9 0.94 2E-05 46.1 2.9 24 39-62 23-46 (163)
457 KOG2494 C3H1-type Zn-finger pr 82.8 0.51 1.1E-05 52.2 0.9 26 765-791 38-64 (331)
458 PF10650 zf-C3H1: Putative zin 82.5 0.73 1.6E-05 30.8 1.2 20 738-758 1-21 (23)
459 PLN02165 adenylate isopentenyl 82.5 0.39 8.5E-06 54.4 -0.1 28 32-59 33-60 (334)
460 KOG1813 Predicted E3 ubiquitin 82.5 0.4 8.7E-06 52.2 -0.0 25 736-760 185-210 (313)
461 PRK12901 secA preprotein trans 82.4 0.73 1.6E-05 58.7 2.2 117 29-147 169-300 (1112)
462 PF13207 AAA_17: AAA domain; P 82.4 0.5 1.1E-05 45.1 0.6 18 44-61 1-18 (121)
463 TIGR01420 pilT_fam pilus retra 82.4 0.58 1.3E-05 53.8 1.3 23 41-63 121-143 (343)
464 cd03239 ABC_SMC_head The struc 82.3 0.93 2E-05 47.0 2.6 42 136-178 115-157 (178)
465 TIGR01243 CDC48 AAA family ATP 82.3 2 4.3E-05 54.7 6.0 20 42-61 212-231 (733)
466 PRK11773 uvrD DNA-dependent he 82.3 0.84 1.8E-05 57.9 2.7 101 28-147 10-118 (721)
467 CHL00095 clpC Clp protease ATP 82.2 2.8 6.2E-05 54.0 7.5 20 42-61 200-219 (821)
468 PRK06871 DNA polymerase III su 82.1 2.2 4.7E-05 48.6 5.7 41 136-178 106-146 (325)
469 TIGR02868 CydC thiol reductant 82.0 0.6 1.3E-05 57.0 1.2 23 40-62 359-381 (529)
470 TIGR02639 ClpA ATP-dependent C 82.0 3.6 7.7E-05 52.4 8.2 18 42-59 203-220 (731)
471 KOG2543 Origin recognition com 82.0 3.1 6.6E-05 47.6 6.6 46 24-69 6-57 (438)
472 PLN03187 meiotic recombination 81.9 1.4 3.1E-05 50.5 4.1 25 41-65 125-149 (344)
473 KOG0737 AAA+-type ATPase [Post 81.8 0.64 1.4E-05 52.6 1.3 103 41-179 126-239 (386)
474 TIGR01074 rep ATP-dependent DN 81.7 0.72 1.6E-05 58.0 1.9 103 28-148 2-112 (664)
475 cd01128 rho_factor Transcripti 81.7 0.57 1.2E-05 51.3 0.8 23 39-61 13-35 (249)
476 COG3973 Superfamily I DNA and 81.7 1 2.2E-05 53.9 2.9 62 30-93 215-284 (747)
477 cd03227 ABC_Class2 ABC-type Cl 81.6 1.3 2.9E-05 44.9 3.5 20 43-62 22-41 (162)
478 TIGR01243 CDC48 AAA family ATP 81.6 1.9 4.1E-05 54.9 5.6 23 43-65 488-510 (733)
479 PF02534 T4SS-DNA_transf: Type 81.4 1.2 2.7E-05 53.4 3.6 46 43-88 45-90 (469)
480 PF12775 AAA_7: P-loop contain 81.3 0.95 2.1E-05 50.3 2.4 32 34-65 24-56 (272)
481 COG1435 Tdk Thymidine kinase [ 81.2 1.6 3.5E-05 45.5 3.8 122 42-188 4-127 (201)
482 PRK13764 ATPase; Provisional 81.0 0.93 2E-05 55.6 2.3 30 33-62 247-277 (602)
483 cd03246 ABCC_Protease_Secretio 81.0 1.4 3E-05 45.3 3.3 24 39-62 25-48 (173)
484 KOG0733 Nuclear AAA ATPase (VC 80.8 1.4 3.1E-05 52.8 3.6 16 43-58 546-561 (802)
485 PF13671 AAA_33: AAA domain; P 80.8 0.68 1.5E-05 45.5 0.9 23 44-66 1-23 (143)
486 COG1136 SalX ABC-type antimicr 80.8 0.55 1.2E-05 50.4 0.3 22 39-60 28-49 (226)
487 TIGR03345 VI_ClpV1 type VI sec 80.8 2.9 6.2E-05 54.0 6.7 17 43-59 209-225 (852)
488 PRK10917 ATP-dependent DNA hel 80.7 2.5 5.4E-05 53.3 6.1 74 277-350 311-388 (681)
489 PF12846 AAA_10: AAA-like doma 80.7 0.7 1.5E-05 51.3 1.1 23 42-64 1-23 (304)
490 COG0630 VirB11 Type IV secreto 80.5 0.84 1.8E-05 51.8 1.7 30 35-64 136-165 (312)
491 PRK11034 clpA ATP-dependent Cl 80.5 2.6 5.6E-05 53.5 6.1 18 42-59 207-224 (758)
492 TIGR02012 tigrfam_recA protein 80.4 1.3 2.8E-05 50.2 3.1 28 39-66 52-79 (321)
493 PRK12608 transcription termina 80.4 1.1 2.3E-05 51.7 2.4 36 28-63 116-154 (380)
494 TIGR03263 guanyl_kin guanylate 80.1 0.74 1.6E-05 47.4 1.0 22 42-63 1-22 (180)
495 KOG0736 Peroxisome assembly fa 79.8 13 0.00028 46.3 11.1 52 137-188 764-828 (953)
496 PRK05580 primosome assembly pr 79.7 2.7 6E-05 52.8 6.0 72 277-350 191-263 (679)
497 PRK06090 DNA polymerase III su 79.4 3.2 6.8E-05 47.2 5.8 41 136-178 107-147 (319)
498 COG0396 sufC Cysteine desulfur 79.3 0.47 1E-05 50.5 -0.8 40 136-176 161-201 (251)
499 PF05876 Terminase_GpA: Phage 79.3 2.7 5.9E-05 51.5 5.6 65 25-89 14-84 (557)
500 COG3421 Uncharacterized protei 79.3 3.2 6.9E-05 49.7 5.8 79 110-188 78-176 (812)
No 1
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.6e-113 Score=976.39 Aligned_cols=573 Identities=31% Similarity=0.468 Sum_probs=507.4
Q ss_pred CCCCCCcccCcchhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcCCc---cccccCCceehhhhHHHHHhhcc
Q 001729 16 SPFTSPEFSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENME---PILCTQPRRFAVVAVAKMVAKGR 92 (1020)
Q Consensus 16 ~~~~~~~r~~LPi~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~~~---~IivtqPrrlaa~sva~rva~e~ 92 (1020)
...+..+|+.|||++++.+|+.++.+|+++||+|+||||||||+|||+++.++. +|.||||||+||+++|+|||+|+
T Consensus 40 ~~~i~~qR~~LPI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~ 119 (674)
T KOG0922|consen 40 NLSIQEQRESLPIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEM 119 (674)
T ss_pred ccCHHHhhccCCHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHh
Confidence 334566788999999999999999999999999999999999999999999885 59999999999999999999999
Q ss_pred ccccCcccceeccccccccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhccCCeEE
Q 001729 93 NCELGGEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRV 172 (1020)
Q Consensus 93 ~~~lg~~Vgy~i~~~~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lki 172 (1020)
++.+|+.|||.|||++.++.+|+|+|+|+|+|+|++..+++ +.+|++|||||||||++.+|+++++||.++++++++|+
T Consensus 120 ~~~lG~~VGY~IRFed~ts~~TrikymTDG~LLRE~l~Dp~-LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~Lkl 198 (674)
T KOG0922|consen 120 GCQLGEEVGYTIRFEDSTSKDTRIKYMTDGMLLREILKDPL-LSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLKL 198 (674)
T ss_pred CCCcCceeeeEEEecccCCCceeEEEecchHHHHHHhcCCc-cccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCceE
Confidence 99999999999999999999999999999999999987764 66999999999999999999999999999999999999
Q ss_pred EEeecccchhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCcccccc
Q 001729 173 VLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAE 252 (1020)
Q Consensus 173 IlmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1020)
|+||||+|+++|++||+. ++++.+|+ +.|||++.|+.. +.
T Consensus 199 IimSATlda~kfS~yF~~------a~i~~i~G----R~fPVei~y~~~-----------------------p~------- 238 (674)
T KOG0922|consen 199 IIMSATLDAEKFSEYFNN------APILTIPG----RTFPVEILYLKE-----------------------PT------- 238 (674)
T ss_pred EEEeeeecHHHHHHHhcC------CceEeecC----CCCceeEEeccC-----------------------Cc-------
Confidence 999999999999999986 67888887 689998887531 11
Q ss_pred cChhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhcccccc------ceEEEEeecccchHHHHHHHHhhhc
Q 001729 253 IKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSS------FFKVHILHSSVDTEQALMAMKICKS 326 (1020)
Q Consensus 253 ~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~------~~~v~~lHs~l~~~er~~i~~~f~~ 326 (1020)
.++.+.....+..||.+++ .|+||||++|+++|+.+++.|..... ...+.++||.|+.++|.+++...+.
T Consensus 239 --~dYv~a~~~tv~~Ih~~E~--~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~ 314 (674)
T KOG0922|consen 239 --ADYVDAALITVIQIHLTEP--PGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPP 314 (674)
T ss_pred --hhhHHHHHHHHHHHHccCC--CCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCC
Confidence 1233444577888998876 57999999999999999998875321 1257899999999999999987764
Q ss_pred -cceEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcccCCeeEEeechhhccc
Q 001729 327 -HRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFGT 405 (1020)
Q Consensus 327 -grkVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~c~rLys~~~~~~ 405 (1020)
.||||+||||||+|||||+|+||||+|++|++.||+..+++.+.++||||++|.||+|||||++||+|||||++++|+.
T Consensus 315 g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~~~ 394 (674)
T KOG0922|consen 315 GKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAYDK 394 (674)
T ss_pred CcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHHhh
Confidence 4599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCcceehhhHhHHHHHhhccCccccCChhHHHhhhcCCCCccchhhHHHHHHHHhhhhhcCCCCccCccc-cchhc
Q 001729 406 LEDHECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTF-YGRLL 484 (1020)
Q Consensus 406 l~~~~~PEI~r~~L~~~vL~l~~~~~~~l~~~~~~l~~~ldpP~~~~i~~al~~L~~lgald~~~~~g~~~lT~-lG~~~ 484 (1020)
|++.+.|||+|++|+.++|+|++++ ++ +.+.|+|+|||+++++..|++.|..+||||++ | .+|. +|+.|
T Consensus 395 ~~~~~~PEI~R~~Ls~~vL~Lkalg---i~--d~l~F~f~d~P~~~~l~~AL~~L~~lgald~~---g--~lt~p~G~~m 464 (674)
T KOG0922|consen 395 MPLQTVPEIQRVNLSSAVLQLKALG---IN--DPLRFPFIDPPPPEALEEALEELYSLGALDDR---G--KLTSPLGRQM 464 (674)
T ss_pred cccCCCCceeeechHHHHHHHHhcC---CC--CcccCCCCCCCChHHHHHHHHHHHhcCcccCc---C--CcCchHHhhh
Confidence 9999999999999999999997533 44 44566999999999999999999999999974 6 4777 99999
Q ss_pred cccccccceeEEEEEeccchhhhhhhhhhhhccCCCccccCCCCccch-hhhcccceecCCCCceeeeccceeeeecchh
Q 001729 485 ASFSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPFGDDAL-FAEYTGCYFGGDGNTRLLTGRKEMVIMGNLC 563 (1020)
Q Consensus 485 a~lpldp~~a~~ll~~~~~gc~~e~l~Iaa~ls~~~~~~~~P~~~~~~-a~~~~~~~~~~~~d~~~~~~~~~~~~l~~l~ 563 (1020)
++||++|.++|+|+.+.++||+.|+++||||||+++ .|.+|.++++. ++..+.+|+.++|| |+++||
T Consensus 465 a~~Pl~p~lsk~ll~s~~~gc~~e~l~i~a~Lsv~~-~f~~p~~~~~~~a~~~~~kf~~~eGD-----------h~tlL~ 532 (674)
T KOG0922|consen 465 AELPLEPHLSKMLLKSSELGCSEEILTIAAMLSVQS-VFSRPKDKKAEDADRKRAKFANPEGD-----------HLTLLN 532 (674)
T ss_pred hhcCCCcchhhhhhhccccCCcchhhhheeeeeccc-eecCccchhhhhhhHHHHhhcCcccC-----------HHHHHH
Confidence 999999999999999999999999999999999886 89999988776 77888899999998 889999
Q ss_pred hHHHHHHHhhhhhhHHHHHHhhhccccccccccchhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhccccccccccCCC
Q 001729 564 AFQFWQHVFKDKQRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKFLGTSNGL 643 (1020)
Q Consensus 564 af~~W~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~wC~~~fL~~~~l~~~~~i~~qL~~~~~~~~~~~~~~~~~~ 643 (1020)
+|+.|.. ++..++||++||||+++|+.+.+||.||.+++.++++...+. .++
T Consensus 533 vy~~~~~---------------------------~~~~~~wC~en~i~~r~l~~a~~ir~QL~~i~~~~~~~~~s~-~~d 584 (674)
T KOG0922|consen 533 VYESWKE---------------------------NGTSKKWCKENFINARSLKRAKDIRKQLRRILDKFGLPVSSC-GGD 584 (674)
T ss_pred HHHHHHh---------------------------cCChhhHHHHhcccHHHHHHHHHHHHHHHHHHHHcCCCccCC-CCC
Confidence 9999986 234578999999999999999999999999999998876442 222
Q ss_pred C---------------------CccCCcccccee-------EeeeCCCCCCCCccccCCCCCCCccccceee
Q 001729 644 P---------------------TYYDPYEFEHTC-------LLNCDPPRDMDPLAADNEHLGPSFEAKKCVA 687 (1020)
Q Consensus 644 ~---------------------~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 687 (1020)
+ ..|......... +.+..++|++||+++.|+ +.|+|.|+.
T Consensus 585 ~~~i~k~l~aGff~N~A~~~~~~~Yrti~~~~~v~IHPSS~l~~~~p~~viy~el~~Tt----k~Y~r~Vt~ 652 (674)
T KOG0922|consen 585 MEKIRKCLCAGFFRNVAERDYQDGYRTIRGGQPVYIHPSSVLFRRKPEWVIYHELLQTT----KEYMRNVTA 652 (674)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCeEEccCCcEEEEechHHhhcCCCCEEEEEEEeecc----hHhHhheee
Confidence 2 223333322222 334669999999999999 999999998
No 2
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.2e-113 Score=958.80 Aligned_cols=587 Identities=27% Similarity=0.387 Sum_probs=517.6
Q ss_pred CCcccCcchhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcCCc----cccccCCceehhhhHHHHHhhccccc
Q 001729 20 SPEFSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENME----PILCTQPRRFAVVAVAKMVAKGRNCE 95 (1020)
Q Consensus 20 ~~~r~~LPi~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~~~----~IivtqPrrlaa~sva~rva~e~~~~ 95 (1020)
+..|+.|||++++++++.++.+++++||+|+||||||||+||||.|.|.. +|.||||||++|+++|.||++|+|+.
T Consensus 258 ee~RksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvk 337 (902)
T KOG0923|consen 258 EEVRKSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVK 337 (902)
T ss_pred HHHHhcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCcc
Confidence 34489999999999999999999999999999999999999999999863 59999999999999999999999999
Q ss_pred cCcccceeccccccccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhccCCeEEEEe
Q 001729 96 LGGEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLM 175 (1020)
Q Consensus 96 lg~~Vgy~i~~~~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlm 175 (1020)
+|..|||+|+|+++++.+|.|.|||+|||+++++.++ .+..|++|||||||||++.+|++.+++|.+.+.||++|++++
T Consensus 338 LG~eVGYsIRFEdcTSekTvlKYMTDGmLlREfL~ep-dLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKllIs 416 (902)
T KOG0923|consen 338 LGHEVGYSIRFEDCTSEKTVLKYMTDGMLLREFLSEP-DLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKLLIS 416 (902)
T ss_pred cccccceEEEeccccCcceeeeeecchhHHHHHhccc-cccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceEEee
Confidence 9999999999999999999999999999999999775 466999999999999999999999999999999999999999
Q ss_pred ecccchhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCcccccccCh
Q 001729 176 SATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKP 255 (1020)
Q Consensus 176 SATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (1020)
|||+|+++|+.||++ +++..+|+ +.|||+++|... +. .
T Consensus 417 SAT~DAekFS~fFDd------apIF~iPG----RRyPVdi~Yt~~-----------------------PE---------A 454 (902)
T KOG0923|consen 417 SATMDAEKFSAFFDD------APIFRIPG----RRYPVDIFYTKA-----------------------PE---------A 454 (902)
T ss_pred ccccCHHHHHHhccC------CcEEeccC----cccceeeecccC-----------------------Cc---------h
Confidence 999999999999986 78889998 568898887331 11 2
Q ss_pred hHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhcc-------ccccceEEEEeecccchHHHHHHHHhhhcc-
Q 001729 256 EVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMK-------PLSSFFKVHILHSSVDTEQALMAMKICKSH- 327 (1020)
Q Consensus 256 ~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~-------~~~~~~~v~~lHs~l~~~er~~i~~~f~~g- 327 (1020)
++.+.....+..||.+.+. |+||||+++.++|+...+.|. .....+.+.++|++||.+.|..|++.-+.|
T Consensus 455 dYldAai~tVlqIH~tqp~--GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~ga 532 (902)
T KOG0923|consen 455 DYLDAAIVTVLQIHLTQPL--GDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGA 532 (902)
T ss_pred hHHHHHHhhheeeEeccCC--ccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCc
Confidence 3445555778899988874 899999999999987766654 234567899999999999999999876554
Q ss_pred ceEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcccCCeeEEeechhhcc-cc
Q 001729 328 RKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFG-TL 406 (1020)
Q Consensus 328 rkVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~c~rLys~~~~~-~l 406 (1020)
||||+||||||+||||++|.||||+|++|++.|++.+++++|.++|||||++.||+|||||++||+|||||+...|. .+
T Consensus 533 RKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgPGKCfRLYt~~aY~~eL 612 (902)
T KOG0923|consen 533 RKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGPGKCFRLYTAWAYEHEL 612 (902)
T ss_pred eeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCCCceEEeechhhhhhhh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999997774 68
Q ss_pred cccCCcceehhhHhHHHHHhhccCccccCChhHHHhhhcCCCCccchhhHHHHHHHHhhhhhcCCCCccCccccchhccc
Q 001729 407 EDHECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLAS 486 (1020)
Q Consensus 407 ~~~~~PEI~r~~L~~~vL~l~~~~~~~l~~~~~~l~~~ldpP~~~~i~~al~~L~~lgald~~~~~g~~~lT~lG~~~a~ 486 (1020)
+..+.|||+|+||.++||.|++ +|..+.+.|+|+|||+.+++..||+.|..||||+.. | +||.+||.|++
T Consensus 613 E~~t~PEIqRtnL~nvVL~LkS-----LGI~Dl~~FdFmDpPp~etL~~aLE~LyaLGALn~~---G--eLTk~GrrMaE 682 (902)
T KOG0923|consen 613 EEMTVPEIQRTNLGNVVLLLKS-----LGIHDLIHFDFLDPPPTETLLKALEQLYALGALNHL---G--ELTKLGRRMAE 682 (902)
T ss_pred ccCCCcceeeccchhHHHHHHh-----cCcchhcccccCCCCChHHHHHHHHHHHHhhccccc---c--chhhhhhhhhh
Confidence 8889999999999999999964 444555677999999999999999999999999884 6 79999999999
Q ss_pred cccccceeEEEEEeccchhhhhhhhhhhhccCCCccccCCCCccchhhhcccceecCCCCceeeeccceeeeecchhhHH
Q 001729 487 FSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPFGDDALFAEYTGCYFGGDGNTRLLTGRKEMVIMGNLCAFQ 566 (1020)
Q Consensus 487 lpldp~~a~~ll~~~~~gc~~e~l~Iaa~ls~~~~~~~~P~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~l~~l~af~ 566 (1020)
||+||++||||+.+.+++|..|+++||||||+.+.+|.+|.+++..++.++..|.++.|| |+.+|++|+
T Consensus 683 fP~dPmlsKmi~as~ky~cs~EiitiaamlS~~~svfyrpk~~~v~ad~a~~~f~~~~gD-----------hi~~L~vyn 751 (902)
T KOG0923|consen 683 FPVDPMLSKMIVASEKYKCSEEIITIAAMLSVGASVFYRPKDKQVHADNARKNFEEPVGD-----------HIVLLNVYN 751 (902)
T ss_pred cCCCHHHHhHHhhhccccchHHHHHHHHHHhcCchheecchhhhhhhhhhhhccCCCCcc-----------hhhhhHHHH
Confidence 999999999999999999999999999999999999999999888888888888887776 899999999
Q ss_pred HHHHHhhhhhhHHHHHHhhhccccccccccchhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhccccccccccCCCC--
Q 001729 567 FWQHVFKDKQRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKFLGTSNGLP-- 644 (1020)
Q Consensus 567 ~W~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~wC~~~fL~~~~l~~~~~i~~qL~~~~~~~~~~~~~~~~~~~-- 644 (1020)
.|.. ++...+||.+||+++++|.++++||.||..++.+..+..+|..+...
T Consensus 752 ~w~e---------------------------s~~s~~wC~e~~iq~~sm~rardir~qL~gll~~v~~~~~s~~~~~~~i 804 (902)
T KOG0923|consen 752 QWKE---------------------------SKYSTQWCYENFIQYRSMKRARDIRDQLEGLLERVEIDLSSNQNDLDKI 804 (902)
T ss_pred HHhh---------------------------cchhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhccccccCChHHHHHH
Confidence 9986 34568999999999999999999999999999998776655322100
Q ss_pred ------------------CccCCccccce-------eEeeeCCCCCCCCccccCCCCCCCccccceee----------ec
Q 001729 645 ------------------TYYDPYEFEHT-------CLLNCDPPRDMDPLAADNEHLGPSFEAKKCVA----------VP 689 (1020)
Q Consensus 645 ------------------~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~----------~p 689 (1020)
.-|...+..++ ++...+|.|++||++++++ ++|+|.|+. |+
T Consensus 805 rk~i~aGff~h~a~l~~~g~y~tvk~~~tv~~hp~S~l~~~~P~wvvy~eLv~ts----ke~mr~~~e~e~~Wlie~aph 880 (902)
T KOG0923|consen 805 RKAITAGFFYHTAKLSKGGHYRTVKHPQTVSIHPNSGLFEQLPRWVVYHELVLTS----KEFMRQVIEIEEEWLIEVAPH 880 (902)
T ss_pred HHHHhccccccceeccCCCcceeeccCcceeecCcccccccCCceEEEeehhcCh----HHHHHHHHhhhhhHHHHhchh
Confidence 11211121222 2444788999999999999 999999987 99
Q ss_pred ccCCCccccHHHHH
Q 001729 690 FVAPNQFQSNNVAE 703 (1020)
Q Consensus 690 y~s~~~f~~~e~k~ 703 (1020)
||...++.+..+++
T Consensus 881 yyk~kdled~~~kk 894 (902)
T KOG0923|consen 881 YYKLKDLEDATNKK 894 (902)
T ss_pred hhhhhhcccccccc
Confidence 99988876655443
No 3
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.8e-113 Score=931.26 Aligned_cols=588 Identities=28% Similarity=0.417 Sum_probs=518.4
Q ss_pred cccCcchhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcCC---ccccccCCceehhhhHHHHHhhccccccCc
Q 001729 22 EFSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM---EPILCTQPRRFAVVAVAKMVAKGRNCELGG 98 (1020)
Q Consensus 22 ~r~~LPi~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~~---~~IivtqPrrlaa~sva~rva~e~~~~lg~ 98 (1020)
.|..||+|.++++.++.+.+|+.++++|+||||||||+||++++... +.|.||||||++|+++|.|||+|++..+|.
T Consensus 42 ~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~~v~CTQprrvaamsva~RVadEMDv~lG~ 121 (699)
T KOG0925|consen 42 KRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHLTGVACTQPRRVAAMSVAQRVADEMDVTLGE 121 (699)
T ss_pred HHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhccceeecCchHHHHHHHHHHHHHHhccccch
Confidence 47889999999999999999999999999999999999999987643 579999999999999999999999999999
Q ss_pred ccceeccccccccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhccCCeEEEEeecc
Q 001729 99 EVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (1020)
Q Consensus 99 ~Vgy~i~~~~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmSAT 178 (1020)
+|||.|+|+++.+++|-+.|||+|||+++..++++ +.+|++||+||||||++.+|.+++++|.+...++++|+|+||||
T Consensus 122 EVGysIrfEdC~~~~T~Lky~tDgmLlrEams~p~-l~~y~viiLDeahERtlATDiLmGllk~v~~~rpdLk~vvmSat 200 (699)
T KOG0925|consen 122 EVGYSIRFEDCTSPNTLLKYCTDGMLLREAMSDPL-LGRYGVIILDEAHERTLATDILMGLLKEVVRNRPDLKLVVMSAT 200 (699)
T ss_pred hccccccccccCChhHHHHHhcchHHHHHHhhCcc-cccccEEEechhhhhhHHHHHHHHHHHHHHhhCCCceEEEeecc
Confidence 99999999999999999999999999999887764 56999999999999999999999999999999999999999999
Q ss_pred cchhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCcccccccChhHH
Q 001729 179 ADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVH 258 (1020)
Q Consensus 179 ld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (1020)
+++.+|..||++ ++++.+|+ .+|++++|..+ ...+..
T Consensus 201 l~a~Kfq~yf~n------~Pll~vpg-----~~PvEi~Yt~e--------------------------------~erDyl 237 (699)
T KOG0925|consen 201 LDAEKFQRYFGN------APLLAVPG-----THPVEIFYTPE--------------------------------PERDYL 237 (699)
T ss_pred cchHHHHHHhCC------CCeeecCC-----CCceEEEecCC--------------------------------CChhHH
Confidence 999999999987 67777876 46777666321 223456
Q ss_pred HHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccc-------cccceEEEEeecccchHHHHHHHHhhh------
Q 001729 259 KLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKP-------LSSFFKVHILHSSVDTEQALMAMKICK------ 325 (1020)
Q Consensus 259 ~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~-------~~~~~~v~~lHs~l~~~er~~i~~~f~------ 325 (1020)
+.+..++..||..+. +|+||||+++.++|+..++.+.. ....++|+++| +.++..+++...
T Consensus 238 EaairtV~qih~~ee--~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~ 311 (699)
T KOG0925|consen 238 EAAIRTVLQIHMCEE--PGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGA 311 (699)
T ss_pred HHHHHHHHHHHhccC--CCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCC
Confidence 667788888988776 58999999999999999887762 23457899999 445555554332
Q ss_pred ccceEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcccCCeeEEeechhhcc-
Q 001729 326 SHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFG- 404 (1020)
Q Consensus 326 ~grkVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~c~rLys~~~~~- 404 (1020)
-+|||+|+||+||++++|++|.+|||+|+.|++.|||+-+.+++.+.||||+++.||+|||||++||+|||||+++.|+
T Consensus 312 ~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~~ 391 (699)
T KOG0925|consen 312 YGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFEK 391 (699)
T ss_pred ccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhhh
Confidence 2569999999999999999999999999999999999999999999999999999999999999999999999999885
Q ss_pred cccccCCcceehhhHhHHHHHhhccCccccCChhHHHhhhcCCCCccchhhHHHHHHHHhhhhhcCCCCccCccccchhc
Q 001729 405 TLEDHECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLL 484 (1020)
Q Consensus 405 ~l~~~~~PEI~r~~L~~~vL~l~~~~~~~l~~~~~~l~~~ldpP~~~~i~~al~~L~~lgald~~~~~g~~~lT~lG~~~ 484 (1020)
+|.+.+.|||+|++|.++||+||.++ +.+ ..-|+|+|||.++++++|++.|..++|||++ | +||++|.+|
T Consensus 392 em~~~typeilrsNL~s~VL~LKklg---I~d--lvhfdfmDpPAPEtLMrALE~LnYLaaLdDd---G--nLT~lG~im 461 (699)
T KOG0925|consen 392 EMQPQTYPEILRSNLSSTVLQLKKLG---IDD--LVHFDFMDPPAPETLMRALEVLNYLAALDDD---G--NLTSLGEIM 461 (699)
T ss_pred cCCCCCcHHHHHHhhHHHHHHHHhcC---ccc--ccCCcCCCCCChHHHHHHHHHhhhhhhhCCC---c--ccchhhhhh
Confidence 79999999999999999999997533 333 3345999999999999999999999999985 7 599999999
Q ss_pred cccccccceeEEEEEeccchhhhhhhhhhhhccCCCccccCCC-CccchhhhcccceecCCCCceeeeccceeeeecchh
Q 001729 485 ASFSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPF-GDDALFAEYTGCYFGGDGNTRLLTGRKEMVIMGNLC 563 (1020)
Q Consensus 485 a~lpldp~~a~~ll~~~~~gc~~e~l~Iaa~ls~~~~~~~~P~-~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~l~~l~ 563 (1020)
++|||||++|||||.+++|.|.+|+++|+||||+.+ .|++|. +.+++|++++..|.|.||| |++++|
T Consensus 462 SEFPLdPqLAkmLi~S~efnCsnEiLsisAMLsvPn-cFvRp~~~a~kaAdeak~~faH~dGD-----------HlTLln 529 (699)
T KOG0925|consen 462 SEFPLDPQLAKMLIGSCEFNCSNEILSISAMLSVPN-CFVRPTSSASKAADEAKETFAHIDGD-----------HLTLLN 529 (699)
T ss_pred hcCCCChHHHHHHhhcCCCCchHHHHHHHhcccCCc-cccCCChhHHHHHHHHHHHhccCCcc-----------hHHHHH
Confidence 999999999999999999999999999999999765 899988 6778888999999999998 666667
Q ss_pred hHHHHHHHhhhhhhHHHHHHhhhccccccccccchhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhccccccccccCCC
Q 001729 564 AFQFWQHVFKDKQRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKFLGTSNGL 643 (1020)
Q Consensus 564 af~~W~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~wC~~~fL~~~~l~~~~~i~~qL~~~~~~~~~~~~~~~~~~ 643 (1020)
+|.+++. ++...+||++||||+++|+.+.++|.||+++|.|+++++.+...+.
T Consensus 530 VYhAfkq---------------------------~~~~~~WC~~~flN~ral~~Ad~vR~qL~rim~R~~L~~~st~F~S 582 (699)
T KOG0925|consen 530 VYHAFKQ---------------------------NNEDPNWCYDNFLNYRALKSADNVRQQLLRIMDRFNLPLCSTDFGS 582 (699)
T ss_pred HHHHHHh---------------------------cCCChhHHHHhcccHHHHHhHHHHHHHHHHHHHHhcCcccCCCCCC
Confidence 7776653 2345789999999999999999999999999999999998877777
Q ss_pred CCccCCccccc------------------------ee------EeeeCCCCCCCCccccCCCCCCCccccceee------
Q 001729 644 PTYYDPYEFEH------------------------TC------LLNCDPPRDMDPLAADNEHLGPSFEAKKCVA------ 687 (1020)
Q Consensus 644 ~~~~~~~~~~~------------------------~~------~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~------ 687 (1020)
+.||.+++.+. .+ .+...|+|++||+|++++ +||||+|+.
T Consensus 583 ~~y~~nirKALvsgyFmqVA~~~~~~~Ylt~kdnqvvqLhps~~l~~~PeWVlyneFvlt~----~N~ir~vt~I~pewl 658 (699)
T KOG0925|consen 583 RDYYVNIRKALVSGYFMQVAHLERGGHYLTVKDNQVVQLHPSTCLDHKPEWVLYNEFVLTT----KNFIRTVTDIRPEWL 658 (699)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhccCCceEEEecCceEEeccccccCCCCCeEEEeeEEeec----cceeeeecccCHHHH
Confidence 76666544332 22 444789999999999999 999999998
Q ss_pred ----ecccCCCccccHHHHHHHHHHHHHH
Q 001729 688 ----VPFVAPNQFQSNNVAEKLASIIKEI 712 (1020)
Q Consensus 688 ----~py~s~~~f~~~e~k~~Le~iike~ 712 (1020)
|+|||++||+++|+|+.|++..+..
T Consensus 659 v~laP~YydlsNfp~~e~k~~L~~~~~~~ 687 (699)
T KOG0925|consen 659 VELAPQYYDLSNFPPSEAKRALEQLYKVR 687 (699)
T ss_pred HHhchhhcccccCCchHHHHHHHHHHHHH
Confidence 9999999999999999999854433
No 4
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-108 Score=924.28 Aligned_cols=580 Identities=27% Similarity=0.399 Sum_probs=507.4
Q ss_pred CCCcccCcchhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcCCc---cccccCCceehhhhHHHHHhhccccc
Q 001729 19 TSPEFSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENME---PILCTQPRRFAVVAVAKMVAKGRNCE 95 (1020)
Q Consensus 19 ~~~~r~~LPi~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~~~---~IivtqPrrlaa~sva~rva~e~~~~ 95 (1020)
..-+++.||++..+++++..|.+|++|||+|+||||||||++|||++.|+. .|.||||||+||+++|+||++|++..
T Consensus 348 i~eqrq~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~ 427 (1042)
T KOG0924|consen 348 IREQRQYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVT 427 (1042)
T ss_pred HHHHHhhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCc
Confidence 556688899999999999999999999999999999999999999999874 79999999999999999999999999
Q ss_pred cCcccceeccccccccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhccCCeEEEEe
Q 001729 96 LGGEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLM 175 (1020)
Q Consensus 96 lg~~Vgy~i~~~~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlm 175 (1020)
+|..|||.|||++.+++.|.|.|||+|+||++...+. .+.+|++||+||||||++++|++++++|.++.++.++|+|++
T Consensus 428 lG~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~-~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVt 506 (1042)
T KOG0924|consen 428 LGDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDR-DLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVT 506 (1042)
T ss_pred cccccceEEEeeecCCCceeEEEeccchHHHHHhhhh-hhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEe
Confidence 9999999999999999999999999999999976554 356999999999999999999999999999999999999999
Q ss_pred ecccchhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCcccccccCh
Q 001729 176 SATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKP 255 (1020)
Q Consensus 176 SATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (1020)
|||+|+++|.+||++ ++..++|+ +.|||++.|.... ..
T Consensus 507 SATm~a~kf~nfFgn------~p~f~IpG----RTyPV~~~~~k~p--------------------------------~e 544 (1042)
T KOG0924|consen 507 SATMDAQKFSNFFGN------CPQFTIPG----RTYPVEIMYTKTP--------------------------------VE 544 (1042)
T ss_pred eccccHHHHHHHhCC------CceeeecC----CccceEEEeccCc--------------------------------hH
Confidence 999999999999986 56777876 6788887763321 12
Q ss_pred hHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccc--------cccceEEEEeecccchHHHHHHHHhhhcc
Q 001729 256 EVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKP--------LSSFFKVHILHSSVDTEQALMAMKICKSH 327 (1020)
Q Consensus 256 ~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~--------~~~~~~v~~lHs~l~~~er~~i~~~f~~g 327 (1020)
++.+....-...||...+ .|+||||++|+++++-.+..+.. ...++.|+++++.||.+-|.++++...++
T Consensus 545 DYVeaavkq~v~Ihl~~~--~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~ 622 (1042)
T KOG0924|consen 545 DYVEAAVKQAVQIHLSGP--PGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGG 622 (1042)
T ss_pred HHHHHHHhhheEeeccCC--CCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCC
Confidence 333444455667777665 48999999999999877665542 12368999999999999999999865555
Q ss_pred -ceEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcccCCeeEEeechhhc-cc
Q 001729 328 -RKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFF-GT 405 (1020)
Q Consensus 328 -rkVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~c~rLys~~~~-~~ 405 (1020)
||+||||||||+++|||+|.||||+|++|.+.|++..+++.|.++|||+|++.||+|||||++||.|||||+++.| ++
T Consensus 623 vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~e 702 (1042)
T KOG0924|consen 623 VRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGPGTCYRLYTEDAYKNE 702 (1042)
T ss_pred ceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCCCcceeeehhhhHHHhh
Confidence 5999999999999999999999999999999999999999999999999999999999999999999999999766 58
Q ss_pred ccccCCcceehhhHhHHHHHhhccCccccCChhHHHhhhcCCCCccchhhHHHHHHHHhhhhhcCCCCccCccccchhcc
Q 001729 406 LEDHECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLA 485 (1020)
Q Consensus 406 l~~~~~PEI~r~~L~~~vL~l~~~~~~~l~~~~~~l~~~ldpP~~~~i~~al~~L~~lgald~~~~~g~~~lT~lG~~~a 485 (1020)
|.+.++|||+|++|.+++|.|+++ +..+...|+|+|||+.+.+..|+..|..||||+.. | .||++|+.|+
T Consensus 703 ml~stvPEIqRTNl~nvVLlLksl-----gV~dll~FdFmD~Pped~~~~sly~Lw~LGAl~~~---g--~LT~lG~~Mv 772 (1042)
T KOG0924|consen 703 MLPSTVPEIQRTNLSNVVLLLKSL-----GVDDLLKFDFMDPPPEDNLLNSLYQLWTLGALDNT---G--QLTPLGRKMV 772 (1042)
T ss_pred cccCCCchhhhcchhhHHHHHHhc-----ChhhhhCCCcCCCCHHHHHHHHHHHHHHhhccccC---C--ccchhhHHhh
Confidence 999999999999999999999653 33444556999999999999999999999999984 6 5999999999
Q ss_pred ccccccceeEEEEEeccchhhhhhhhhhhhccCCCccccCCCCccchhhhcccceecCCCCceeeeccceeeeecchhhH
Q 001729 486 SFSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPFGDDALFAEYTGCYFGGDGNTRLLTGRKEMVIMGNLCAF 565 (1020)
Q Consensus 486 ~lpldp~~a~~ll~~~~~gc~~e~l~Iaa~ls~~~~~~~~P~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~l~~l~af 565 (1020)
+|||||.++||||.+..+||.+|+++|++|||+.. .|.+|.+++++++.++.+|+++++| ||++||+|
T Consensus 773 efpLDP~lsKmll~a~~~Gc~dEilsIvSmLSvp~-VF~rpker~eead~ar~Kf~~~~sD-----------hLTlLNVf 840 (1042)
T KOG0924|consen 773 EFPLDPPLSKMLLMAARMGCSDEILSIVSMLSVPA-VFYRPKEREEEADAAREKFQVPESD-----------HLTLLNVF 840 (1042)
T ss_pred hCCCCchHHHHHHHHhccCcHHHHHHHHHHhcccc-eeeccccchhhhhhHHhhhcCCCCc-----------hhhHHHHH
Confidence 99999999999999999999999999999999865 8999999999999999999999987 89999999
Q ss_pred HHHHHHhhhhhhHHHHHHhhhccccccccccchhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhccccccccccCCC--
Q 001729 566 QFWQHVFKDKQRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKFLGTSNGL-- 643 (1020)
Q Consensus 566 ~~W~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~wC~~~fL~~~~l~~~~~i~~qL~~~~~~~~~~~~~~~~~~-- 643 (1020)
++|.+ ++....||.+|||+.++|+.++++|.||+.+|+.+++++.|+.+-+
T Consensus 841 ~qw~~---------------------------~~~~~~WCnd~~l~~kaL~~arevR~ql~~il~~l~~~l~S~~dwdiv 893 (1042)
T KOG0924|consen 841 NQWRK---------------------------NKYSSMWCNDHYLQVKALKKAREVRRQLLEILKQLKLPLISSDDWDIV 893 (1042)
T ss_pred HHHHh---------------------------cCCchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHcCCCcccCchHHHH
Confidence 99986 3345789999999999999999999999999999999887752211
Q ss_pred -----------------CCccCCccccceeEee------e--CCCCCCCCccccCCCCCCCccccceee----------e
Q 001729 644 -----------------PTYYDPYEFEHTCLLN------C--DPPRDMDPLAADNEHLGPSFEAKKCVA----------V 688 (1020)
Q Consensus 644 -----------------~~~~~~~~~~~~~~~~------~--~~~~~~~~~~~~~~~~~~~~~~r~~~~----------~ 688 (1020)
-..|-+.+..-.|.+| + .|..++||+++.|+ +.||+-|++ |
T Consensus 894 rKCIcs~~fhn~Arlkg~g~YV~~~tg~~c~lHPsS~L~g~y~p~Yivyhel~~T~----keym~cvT~v~~~wl~E~gp 969 (1042)
T KOG0924|consen 894 RKCICSAYFHNAARLKGIGEYVNLSTGIPCHLHPSSVLHGLYTPDYIVYHELLMTT----KEYMQCVTSVSPEWLAELGP 969 (1042)
T ss_pred HHHHHHHHHHHHHHhccCceEEEccCCcceeecchHhhhcCCCCCeeeehHHHHhH----HHHHHHHhhCCHHHHHHhCc
Confidence 1333333333344333 2 57888999999999 999999998 6
Q ss_pred cccCCCcc
Q 001729 689 PFVAPNQF 696 (1020)
Q Consensus 689 py~s~~~f 696 (1020)
-||+..+-
T Consensus 970 ~~y~ik~~ 977 (1042)
T KOG0924|consen 970 MFYSIKEA 977 (1042)
T ss_pred eeEecccc
Confidence 66765543
No 5
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=100.00 E-value=1.2e-97 Score=893.33 Aligned_cols=739 Identities=29% Similarity=0.361 Sum_probs=575.2
Q ss_pred CCcccCcchhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcC-----CccccccCCceehhhhHHHHHhhcccc
Q 001729 20 SPEFSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN-----MEPILCTQPRRFAVVAVAKMVAKGRNC 94 (1020)
Q Consensus 20 ~~~r~~LPi~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~-----~~~IivtqPrrlaa~sva~rva~e~~~ 94 (1020)
...|.+||++.++++|++++.++++++|+|+||||||||+||++++.. ..+|+||||||++|+++|+||+.|++.
T Consensus 166 ~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~ 245 (924)
T KOG0920|consen 166 LRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGE 245 (924)
T ss_pred HHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhcc
Confidence 344789999999999999999999999999999999999999999864 458999999999999999999999999
Q ss_pred ccCcccceeccccccccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhccCCeEEEE
Q 001729 95 ELGGEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVL 174 (1020)
Q Consensus 95 ~lg~~Vgy~i~~~~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIl 174 (1020)
.+|..|||+||.++..+..+.+.|||+|+|++.+..+. .+.+++|||+||+|||++++||++.++|.++.+++++|+|+
T Consensus 246 ~~g~~VGYqvrl~~~~s~~t~L~fcTtGvLLr~L~~~~-~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvIL 324 (924)
T KOG0920|consen 246 SLGEEVGYQVRLESKRSRETRLLFCTTGVLLRRLQSDP-TLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVIL 324 (924)
T ss_pred ccCCeeeEEEeeecccCCceeEEEecHHHHHHHhccCc-ccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEE
Confidence 99999999999999998899999999999999998754 36699999999999999999999999999999999999999
Q ss_pred eecccchhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCc-----cc
Q 001729 175 MSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPS-----MA 249 (1020)
Q Consensus 175 mSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~ 249 (1020)
||||+|++.|++||+. .+++.+|+ +.||+..+|++++...+.......... .++... ..
T Consensus 325 MSAT~dae~fs~YF~~------~pvi~i~g----rtfpV~~~fLEDil~~~~~~~~~~~~~------~~~~~~~~~~~~~ 388 (924)
T KOG0920|consen 325 MSATLDAELFSDYFGG------CPVITIPG----RTFPVKEYFLEDILSKTGYVSEDDSAR------SGPERSQLRLARL 388 (924)
T ss_pred eeeecchHHHHHHhCC------CceEeecC----CCcchHHHHHHHHHHHhcccccccccc------cccccCccccccc
Confidence 9999999999999985 56888887 689999999999988775322211111 000000 00
Q ss_pred ccccChhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhcccc-----ccceEEEEeecccchHHHHHHHHhh
Q 001729 250 NAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL-----SSFFKVHILHSSVDTEQALMAMKIC 324 (1020)
Q Consensus 250 ~~~~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~-----~~~~~v~~lHs~l~~~er~~i~~~f 324 (1020)
........++++..++.+|+..+. .|.||||+||+++|..+.+.|... ..++.+.++|+.|+.++|+.+++.+
T Consensus 389 ~~~~~~id~~Li~~li~~I~~~~~--~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~p 466 (924)
T KOG0920|consen 389 KLWEPEIDYDLIEDLIEYIDEREF--EGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRP 466 (924)
T ss_pred hhccccccHHHHHHHHHhcccCCC--CceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCC
Confidence 001111457889999999998844 589999999999999999998631 2348899999999999999999988
Q ss_pred hccc-eEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcccCCeeEEeechhhc
Q 001729 325 KSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFF 403 (1020)
Q Consensus 325 ~~gr-kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~c~rLys~~~~ 403 (1020)
..|. |||+||||||+|||||||.||||+|+.|++.||+..++.++...|+|+|++.||+|||||+++|.||+||++..|
T Consensus 467 p~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~G~cy~L~~~~~~ 546 (924)
T KOG0920|consen 467 PKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVRPGICYHLYTRSRY 546 (924)
T ss_pred CCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCccCCeeEEeechhhh
Confidence 7775 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc-cCCcceehhhHhHHHHHhhccCccccCChhHHHhhhcCCCCccchhhHHHHHHHHhhhhhcCCCCccCccccch
Q 001729 404 GTLED-HECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGR 482 (1020)
Q Consensus 404 ~~l~~-~~~PEI~r~~L~~~vL~l~~~~~~~l~~~~~~l~~~ldpP~~~~i~~al~~L~~lgald~~~~~g~~~lT~lG~ 482 (1020)
+.+.. +++|||+|.+|.+++|++|+++ +++...|+..+++||+.++|..|+..|..+|||+.+ .+||+||+
T Consensus 547 ~~~~~~~q~PEilR~pL~~l~L~iK~l~---~~~~~~fLskaldpP~~~~v~~a~~~L~~igaL~~~-----e~LT~LG~ 618 (924)
T KOG0920|consen 547 EKLMLAYQLPEILRTPLEELCLHIKVLE---QGSIKAFLSKALDPPPADAVDLAIERLKQIGALDES-----EELTPLGL 618 (924)
T ss_pred hhcccccCChHHHhChHHHhhheeeecc---CCCHHHHHHHhcCCCChHHHHHHHHHHHHhccccCc-----ccchHHHH
Confidence 97766 9999999999999999998544 667779999999999999999999999999999983 37999999
Q ss_pred hccccccccceeEEEEEeccchhhhhhhhhhhhccCCCccccCCCCccchhhhcccceecCCCCceeeeccceeeeecch
Q 001729 483 LLASFSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPFGDDALFAEYTGCYFGGDGNTRLLTGRKEMVIMGNL 562 (1020)
Q Consensus 483 ~~a~lpldp~~a~~ll~~~~~gc~~e~l~Iaa~ls~~~~~~~~P~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~l~~l 562 (1020)
+|+.||+||+++||++.+..|+|++++++|||+|+. +.||..|.++++.+++++..|...+ ++|||+++
T Consensus 619 ~la~lPvd~~igK~ll~g~if~cLdp~l~iaa~Ls~-k~PF~~~~~~~~~~~~~~~~~~~~~----------~SD~la~~ 687 (924)
T KOG0920|consen 619 HLASLPVDVRIGKLLLFGAIFGCLDPALTIAAALSF-KSPFVSPLGKREEADKAKKLLALDS----------ISDHLAVV 687 (924)
T ss_pred HHHhCCCccccchhheehhhccccchhhhHHHHhcc-CCCcccCCCchhHHHHHHHHhccCC----------cchHHHHH
Confidence 999999999999999999999999999999999994 5699999999988888887776433 46699999
Q ss_pred hhHHHHHHHhhhhhhHHHHHHhhhccccccccccchhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhccccccccccCC
Q 001729 563 CAFQFWQHVFKDKQRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKFLGTSNG 642 (1020)
Q Consensus 563 ~af~~W~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~wC~~~fL~~~~l~~~~~i~~qL~~~~~~~~~~~~~~~~~ 642 (1020)
+||+.|+++...+ ...+++||++||||+.+|+++++++.|+.+.++++++-..+ ..
T Consensus 688 ~ay~~w~~~~~~~----------------------~~~~~~fc~~~fLs~~~l~~i~~l~~q~~~~l~~~g~~~~~--~~ 743 (924)
T KOG0920|consen 688 RAYAGWREILRSG----------------------PSAEKDFCEENFLSSNTLQEISSLRVQFLELLSDIGLIPIS--ST 743 (924)
T ss_pred HHHHHHHHHHhcc----------------------chHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhcccccCC--cc
Confidence 9999999875532 23578999999999999999999999999999998652211 10
Q ss_pred CCCccCCccccceeEeeeCCCCCCCCccccCCCCCCCccccceeeecccCCCccccHHHHHHHHHHHHHHHhhcccCCCC
Q 001729 643 LPTYYDPYEFEHTCLLNCDPPRDMDPLAADNEHLGPSFEAKKCVAVPFVAPNQFQSNNVAEKLASIIKEIRVQYVEDVSG 722 (1020)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~py~s~~~f~~~e~k~~Le~iike~r~q~~~~~~~ 722 (1020)
. .+..- +. ...++..+-+|.|.+.+.|....+... .++....
T Consensus 744 --~---------------~~~~~---~~--n~~s~~~~~iravl~a~lyP~i~~~~~--------------~~~~~~~-- 785 (924)
T KOG0920|consen 744 --A---------------ALTDS---EC--NHNSQNPELVRAVLCAGLYPNIAFVRR--------------MEPKSKS-- 785 (924)
T ss_pred --c---------------ccCch---hh--hhcCCCHHHHHHHHhccCCCceeeeec--------------ccCCcCc--
Confidence 0 00000 00 111122345555555555554433222 0100000
Q ss_pred CccCCCCCccCCCCCccceeeccccccCCCCCCCCcCcCCCCCCccceeccCCCCCCCCCccCCCCCCCCCCCCCCcCCC
Q 001729 723 NQDKAVNGSETPGEAPLCVYFINGSCNRGTGCPFSHSLQAKRPACKFFYSLQGCRNGDSCIFSHDLGQPVLPSSSFTCLP 802 (1020)
Q Consensus 723 ~~~~~~~~~~~~~~~~~C~~f~~G~C~~G~~C~f~H~~~~~~~~C~~f~~~g~C~~g~~C~f~H~~~~~~~~~~~~~~~~ 802 (1020)
=+|+..+. -=-+.|+ .+..+..++.|.. -|.|.+...+... ..-..|
T Consensus 786 -----------------~~~~~~~~-----~~v~i~~------~sv~~~~~~~~~p--~l~~~~k~~t~~~-~~~rd~-- 832 (924)
T KOG0920|consen 786 -----------------VTFVTKAD-----GRVIIHP------SSVNEQSTGFQSP--FLVFPEKVKSTRL-VSLRDT-- 832 (924)
T ss_pred -----------------ceeecCCc-----eeEEEec------chhhccccccCCc--ceEEeeecccCCc-ceeeec--
Confidence 11111110 1113332 1233335555554 5677776633321 000000
Q ss_pred CCCCcchhhhhhcccCCCCCeEEEEeCCCcccccccccccCCCceEeecccCCcccccCccccceeeccccchhhHHhcc
Q 001729 803 EDGVANAASLLRLFPTSSDGSILLLDDTDMHFSANLACLYDPSRIISTTCLSDSAICDTSLAGIRILWGLCHSLKTVISE 882 (1020)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 882 (1020)
+..+....+. +++..-. ....+..++..-+..-....++ +....++|.|++....++.+
T Consensus 833 -----T~v~~~~~ll---------fgg~~~~------~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~Lr~~l~~~l~~ 891 (924)
T KOG0920|consen 833 -----TSVSSSALLL---------FGGGIST------VRMKSGSLALLLPDGWLRFKAL-PKTARLLKELRRELDSLLSK 891 (924)
T ss_pred -----CCCCcHHhee---------ecCCcee------ecCCCCccceecCCceEEeecc-hhHHHHHHHHHHHHHHHHHH
Confidence 1111111111 2221111 2223333333333444455677 78889999999999999999
Q ss_pred cCCCC-CCCCceeEEEeecCccccccChhhhH
Q 001729 883 AGDNP-IPWKEVKCVLWYPSLESYSENLESQK 913 (1020)
Q Consensus 883 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 913 (1020)
..++| ++| ...+..|.-...++.+-+.+++
T Consensus 892 ~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~ 922 (924)
T KOG0920|consen 892 KIRSPCASL-PDSSGKGSESPSLIANLLVGEK 922 (924)
T ss_pred hccCccccc-cccccccccchhhhhhhhhhhc
Confidence 99965 469 8899999998888877666554
No 6
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=6e-96 Score=911.43 Aligned_cols=587 Identities=24% Similarity=0.365 Sum_probs=489.2
Q ss_pred CCCCc-ccCcchhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcCCc---cccccCCceehhhhHHHHHhhccc
Q 001729 18 FTSPE-FSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENME---PILCTQPRRFAVVAVAKMVAKGRN 93 (1020)
Q Consensus 18 ~~~~~-r~~LPi~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~~~---~IivtqPrrlaa~sva~rva~e~~ 93 (1020)
.|... +.+|||+.++++|++++.+|+++||+|+||||||||+|+++++.+.+ .|+||||||++|+++|+|++++++
T Consensus 64 ~p~~~~~~~LPi~~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~ 143 (1294)
T PRK11131 64 RPEITYPENLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELE 143 (1294)
T ss_pred CcccCCCCCCCHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHh
Confidence 44444 45799999999999999999999999999999999999999987653 799999999999999999999999
Q ss_pred cccCcccceeccccccccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhccCCeEEE
Q 001729 94 CELGGEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVV 173 (1020)
Q Consensus 94 ~~lg~~Vgy~i~~~~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiI 173 (1020)
..+|..|||.+++++..+.+++|+|||||+|++++..+.+ +.+|++|||||||||++++||++++++.++..++++|+|
T Consensus 144 ~~lG~~VGY~vrf~~~~s~~t~I~v~TpG~LL~~l~~d~~-Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rpdlKvI 222 (1294)
T PRK11131 144 TELGGCVGYKVRFNDQVSDNTMVKLMTDGILLAEIQQDRL-LMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVI 222 (1294)
T ss_pred hhhcceeceeecCccccCCCCCEEEEChHHHHHHHhcCCc-cccCcEEEecCccccccccchHHHHHHHhhhcCCCceEE
Confidence 9999999999999999999999999999999999987654 679999999999999999999999999999888999999
Q ss_pred EeecccchhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCccccccc
Q 001729 174 LMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEI 253 (1020)
Q Consensus 174 lmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (1020)
+||||++.+.|+++|.+ .+++.+++ +.+++++.|.... .. ....
T Consensus 223 LmSATid~e~fs~~F~~------apvI~V~G----r~~pVei~y~p~~-----------------------~~---~~~~ 266 (1294)
T PRK11131 223 ITSATIDPERFSRHFNN------APIIEVSG----RTYPVEVRYRPIV-----------------------EE---ADDT 266 (1294)
T ss_pred EeeCCCCHHHHHHHcCC------CCEEEEcC----ccccceEEEeecc-----------------------cc---cchh
Confidence 99999999999999964 23455654 3466666553210 00 0000
Q ss_pred ChhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccc-cceEEEEeecccchHHHHHHHHhhhccceEEE
Q 001729 254 KPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLS-SFFKVHILHSSVDTEQALMAMKICKSHRKVIL 332 (1020)
Q Consensus 254 ~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~-~~~~v~~lHs~l~~~er~~i~~~f~~grkVLV 332 (1020)
..+....+.+.+..+... ..|+||||+||+++|+.+++.|.... ....+.++||+|+.++|..+++.. ++++|||
T Consensus 267 ~~d~l~~ll~~V~~l~~~---~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~-g~rkIIV 342 (1294)
T PRK11131 267 ERDQLQAIFDAVDELGRE---GPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH-SGRRIVL 342 (1294)
T ss_pred hHHHHHHHHHHHHHHhcC---CCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc-CCeeEEE
Confidence 112222333334444432 24799999999999999999998543 235688999999999999998763 4569999
Q ss_pred EeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcccCCeeEEeechhhcccccccCCc
Q 001729 333 ATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFGTLEDHECP 412 (1020)
Q Consensus 333 ATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~c~rLys~~~~~~l~~~~~P 412 (1020)
|||+||+|||||+|+||||+|++|.++||+.++++.+...|||+++|.||+|||||.++|+||+||++++|+.+++++.|
T Consensus 343 ATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~~G~c~rLyte~d~~~~~~~~~P 422 (1294)
T PRK11131 343 ATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDP 422 (1294)
T ss_pred eccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCCCCcEEEEeCCHHHHHhhhcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceehhhHhHHHHHhhccCccccCChhHHHhhhcCCCCccchhhHHHHHHHHhhhhhcCCCCccCccccchhccccccccc
Q 001729 413 AILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFD 492 (1020)
Q Consensus 413 EI~r~~L~~~vL~l~~~~~~~l~~~~~~l~~~ldpP~~~~i~~al~~L~~lgald~~~~~g~~~lT~lG~~~a~lpldp~ 492 (1020)
||+|++|.++||+|+.++ ++++..| +|++||+.++|.+|++.|.++||||.+...+..+||++|+.|++|||||+
T Consensus 423 EIlR~~L~~viL~lk~lg---l~di~~F--~fldpP~~~~i~~al~~L~~LgAld~~~~~~~~~LT~lG~~la~LPldPr 497 (1294)
T PRK11131 423 EILRTNLASVILQMTALG---LGDIAAF--PFVEAPDKRNIQDGVRLLEELGAITTDEQASAYKLTPLGRQLAQLPVDPR 497 (1294)
T ss_pred ccccCCHHHHHHHHHHcC---CCCccee--eCCCCCCHHHHHHHHHHHHHCCCCCccccCCCccCcHHHHHHHhCCCChH
Confidence 999999999999998644 4555444 89999999999999999999999986311122369999999999999999
Q ss_pred eeEEEEEeccchhhhhhhhhhhhccCCCccccCCCCccchhhhcccceecCCCCceeeeccceeeeecchhhHHHHHHHh
Q 001729 493 ASVLVLKFGEIGMLREGILLGILMDTQPLPILHPFGDDALFAEYTGCYFGGDGNTRLLTGRKEMVIMGNLCAFQFWQHVF 572 (1020)
Q Consensus 493 ~a~~ll~~~~~gc~~e~l~Iaa~ls~~~~~~~~P~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~l~~l~af~~W~~~~ 572 (1020)
+||||+.+..+||++|+++|||+||+++ ||.+|.+++++++..+.+|.+++|| |++++|+|+.|++..
T Consensus 498 lakmLl~a~~~~c~~evl~IaA~Lsv~d-pf~~p~~~~~~a~~~~~~f~~~~sD-----------~lt~ln~~~~~~~~~ 565 (1294)
T PRK11131 498 LARMVLEAQKHGCVREVMIITSALSIQD-PRERPMDKQQASDEKHRRFADKESD-----------FLAFVNLWNYLQEQQ 565 (1294)
T ss_pred HHHHHHHhhhcCCHHHHHHHHHHHcCCC-cccCCchhHHHHHHHHHhhCCCCCC-----------HHHHHHHHHHHHHHH
Confidence 9999999999999999999999999986 8999999888888888889888887 999999999998632
Q ss_pred hhhhhHHHHHHhhhccccccccccchhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhccccccccccCC----------
Q 001729 573 KDKQRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKFLGTSNG---------- 642 (1020)
Q Consensus 573 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~wC~~~fL~~~~l~~~~~i~~qL~~~~~~~~~~~~~~~~~---------- 642 (1020)
+.. ..+..++||++||||+++|++|.+||.||.++++++++...+..+.
T Consensus 566 ~~~---------------------s~~~~~~~C~~~~L~~~~l~e~~~i~~QL~~~~~~~g~~~~~~~~~~~~i~~all~ 624 (1294)
T PRK11131 566 KAL---------------------SSNQFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPVNSEPAEYREIHTALLT 624 (1294)
T ss_pred hhh---------------------cchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHHh
Confidence 110 0234578999999999999999999999999999988755321100
Q ss_pred -----------CCCccCCccccc------eeEeeeCCCCCCCCccccCCCCCCCccccceee
Q 001729 643 -----------LPTYYDPYEFEH------TCLLNCDPPRDMDPLAADNEHLGPSFEAKKCVA 687 (1020)
Q Consensus 643 -----------~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 687 (1020)
...+|....... .++.+..+.|++||+++.|+ +.|+|+|++
T Consensus 625 G~~~nva~~~~~~~~y~~~~~~~~~ihP~S~L~~~~p~wvv~~Elv~Ts----r~y~r~va~ 682 (1294)
T PRK11131 625 GLLSHIGMKDAEKQEYTGARNARFSIFPGSGLFKKPPKWVMVAELVETS----RLWGRIAAR 682 (1294)
T ss_pred hcHHHHeeccCCCCeEEccCCcEEEEcCCccccCCCCCEEEEEeeeccC----hhhhhhhcc
Confidence 001222222111 12444668999999999998 999999998
No 7
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=5.3e-93 Score=858.83 Aligned_cols=532 Identities=30% Similarity=0.403 Sum_probs=457.2
Q ss_pred CCCCCcccCcchhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcCC---ccccccCCceehhhhHHHHHhhccc
Q 001729 17 PFTSPEFSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM---EPILCTQPRRFAVVAVAKMVAKGRN 93 (1020)
Q Consensus 17 ~~~~~~r~~LPi~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~~---~~IivtqPrrlaa~sva~rva~e~~ 93 (1020)
+.....+..||++..+.+|++++.+|+++||+||||||||||+|+++++.++ ++|+||||||++|.++|+|++++++
T Consensus 40 ~~~~~~~~~LPv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~ 119 (845)
T COG1643 40 PDILEYRSGLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELG 119 (845)
T ss_pred chhhhccccCCcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhC
Confidence 3345668889999999999999999999999999999999999999999985 4899999999999999999999999
Q ss_pred cccCcccceeccccccccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhccC-CeEE
Q 001729 94 CELGGEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKN-DLRV 172 (1020)
Q Consensus 94 ~~lg~~Vgy~i~~~~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~-~lki 172 (1020)
+.+|+.|||.||+++.++++|+|.|||+|+|++++++++. +..|++|||||||||++++|+++++++.++..++ |+||
T Consensus 120 ~~~G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKi 198 (845)
T COG1643 120 EKLGETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKL 198 (845)
T ss_pred CCcCceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceE
Confidence 9999999999999999999999999999999999998764 6699999999999999999999999999877766 7999
Q ss_pred EEeecccchhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCcccccc
Q 001729 173 VLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAE 252 (1020)
Q Consensus 173 IlmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1020)
|+||||+|.++|++||++ ++++.+++ +.|||+++|.+... .+
T Consensus 199 IimSATld~~rfs~~f~~------apvi~i~G----R~fPVei~Y~~~~~-----------------------~d----- 240 (845)
T COG1643 199 IIMSATLDAERFSAYFGN------APVIEIEG----RTYPVEIRYLPEAE-----------------------AD----- 240 (845)
T ss_pred EEEecccCHHHHHHHcCC------CCEEEecC----CccceEEEecCCCC-----------------------cc-----
Confidence 999999999999999986 66777876 68999988754211 00
Q ss_pred cChhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccc--cccceEEEEeecccchHHHHHHHHhhhcc-ce
Q 001729 253 IKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKP--LSSFFKVHILHSSVDTEQALMAMKICKSH-RK 329 (1020)
Q Consensus 253 ~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~--~~~~~~v~~lHs~l~~~er~~i~~~f~~g-rk 329 (1020)
..+.+.+...+...... ..|+||||+||.++|+.+++.|.. ....+.|.++||.|+.++|.++++....+ ||
T Consensus 241 --~~l~~ai~~~v~~~~~~---~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RK 315 (845)
T COG1643 241 --YILLDAIVAAVDIHLRE---GSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRK 315 (845)
T ss_pred --hhHHHHHHHHHHHhccC---CCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcce
Confidence 00223333333333222 258999999999999999999986 33568999999999999999999988777 58
Q ss_pred EEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcccCCeeEEeechhhccccccc
Q 001729 330 VILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFGTLEDH 409 (1020)
Q Consensus 330 VLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~c~rLys~~~~~~l~~~ 409 (1020)
||+||||||||||||+|+||||+|++|+++||+.++++.+.++|||||++.||+|||||++||+|||||++++|..|+++
T Consensus 316 VVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~~~~~~ 395 (845)
T COG1643 316 VVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFLAFPEF 395 (845)
T ss_pred EEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCCCceEEEecCHHHHHhcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceehhhHhHHHHHhhccCccccC-ChhHHHhhhcCCCCccchhhHHHHHHHHhhhhhcCCCCccCccccchhccccc
Q 001729 410 ECPAILRLSLRLQVLLICCAESKAIS-DPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFS 488 (1020)
Q Consensus 410 ~~PEI~r~~L~~~vL~l~~~~~~~l~-~~~~~l~~~ldpP~~~~i~~al~~L~~lgald~~~~~g~~~lT~lG~~~a~lp 488 (1020)
+.|||+|++|+.++|+|+.+| ++ ++ ..|+|+|||+..++.+|++.|.++||||.. | .||++|+.|+.||
T Consensus 396 t~PEIlrtdLs~~vL~l~~~G---~~~d~--~~f~fld~P~~~~i~~A~~~L~~LGAld~~---g--~LT~lG~~ms~lp 465 (845)
T COG1643 396 TLPEILRTDLSGLVLQLKSLG---IGQDI--APFPFLDPPPEAAIQAALTLLQELGALDDS---G--KLTPLGKQMSLLP 465 (845)
T ss_pred CChhhhhcchHHHHHHHHhcC---CCCCc--ccCccCCCCChHHHHHHHHHHHHcCCcCCC---C--CCCHHHHHHHhCC
Confidence 999999999999999997655 32 44 345999999999999999999999999984 5 4999999999999
Q ss_pred cccceeEEEEEeccchhhhhhhhhhhhccCCCc--cccCCCCccc---hhhhcc-cceecCCCCceeeeccceeeeecch
Q 001729 489 LSFDASVLVLKFGEIGMLREGILLGILMDTQPL--PILHPFGDDA---LFAEYT-GCYFGGDGNTRLLTGRKEMVIMGNL 562 (1020)
Q Consensus 489 ldp~~a~~ll~~~~~gc~~e~l~Iaa~ls~~~~--~~~~P~~~~~---~a~~~~-~~~~~~~~d~~~~~~~~~~~~l~~l 562 (1020)
+||++|+||+.+.+.||+.|+++||||||+++. .|.++.+.++ ..+..+ ..+.+ .. ....+++..+
T Consensus 466 ldprLA~mLl~a~~~g~~~e~~~Ias~Ls~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~-~~-------~~~~d~~~ll 537 (845)
T COG1643 466 LDPRLARMLLTAPEGGCLGEAATIASMLSEQDRESDFSRDVKLRKQRTAQDLLKRLKRRN-AA-------DPRGDHLLLL 537 (845)
T ss_pred CChHHHHHHHhccccCcHHHHHHHHHhhccCCCcchhccccchhhHHHHHHHHHHHHhcc-CC-------CcchHHHHHH
Confidence 999999999999999999999999999998871 3666665544 222222 11222 00 0123488899
Q ss_pred hhHHHHHHHhhhhhhHHHHHHhhhccccccccccchhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhc
Q 001729 563 CAFQFWQHVFKDKQRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHR 631 (1020)
Q Consensus 563 ~af~~W~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~wC~~~fL~~~~l~~~~~i~~qL~~~~~~ 631 (1020)
++|..|.....++. .....+||+.++++.++|.++..++.+++..+.+
T Consensus 538 ~~~~~~i~~~~~~~---------------------~~~~~~~~~~~~~~~~~L~~~~~i~~~~l~~~~~ 585 (845)
T COG1643 538 EAFPDRIARKRAKG---------------------EYLRANGCRAMLFPTKALSRAPWIIAALLVQTSA 585 (845)
T ss_pred HHHHHHHHhhhccc---------------------hhhHhcChhhhcCChhHHHhhHHHHHHHHHhhhc
Confidence 99999987533111 1235789999999999999999999999998877
No 8
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=4.5e-92 Score=880.43 Aligned_cols=579 Identities=25% Similarity=0.377 Sum_probs=484.7
Q ss_pred ccCcchhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcCC---ccccccCCceehhhhHHHHHhhccccccCcc
Q 001729 23 FSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM---EPILCTQPRRFAVVAVAKMVAKGRNCELGGE 99 (1020)
Q Consensus 23 r~~LPi~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~~---~~IivtqPrrlaa~sva~rva~e~~~~lg~~ 99 (1020)
+.+|||+.++++|++++.+|+++||+|+||||||||+|+++++.+. +.|+||||||++|.++|+|+++++|+.+|..
T Consensus 63 ~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~ 142 (1283)
T TIGR01967 63 PDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEK 142 (1283)
T ss_pred CCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceE
Confidence 4579999999999999999999999999999999999999998764 3799999999999999999999999999999
Q ss_pred cceeccccccccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhccCCeEEEEeeccc
Q 001729 100 VGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATA 179 (1020)
Q Consensus 100 Vgy~i~~~~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmSATl 179 (1020)
|||.+++++..+.+|+|+|+|+|+|++++..+.. +.+|++|||||||||++++|+++++++.++..++++|+|+||||+
T Consensus 143 VGY~vR~~~~~s~~T~I~~~TdGiLLr~l~~d~~-L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLKlIlmSATl 221 (1283)
T TIGR01967 143 VGYKVRFHDQVSSNTLVKLMTDGILLAETQQDRF-LSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKIIITSATI 221 (1283)
T ss_pred EeeEEcCCcccCCCceeeeccccHHHHHhhhCcc-cccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCeEEEEeCCc
Confidence 9999999999999999999999999999987653 569999999999999999999999999999899999999999999
Q ss_pred chhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCcccccccChhHHH
Q 001729 180 DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHK 259 (1020)
Q Consensus 180 d~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (1020)
+.+.|++||+. .+++.+++ +.||+++.|.... . ..........+
T Consensus 222 d~~~fa~~F~~------apvI~V~G----r~~PVev~Y~~~~-----------------------~---~~~~~~~~~~~ 265 (1283)
T TIGR01967 222 DPERFSRHFNN------APIIEVSG----RTYPVEVRYRPLV-----------------------E---EQEDDDLDQLE 265 (1283)
T ss_pred CHHHHHHHhcC------CCEEEECC----CcccceeEEeccc-----------------------c---cccchhhhHHH
Confidence 99999999964 23555665 4577776553210 0 00000011223
Q ss_pred HHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccc-cceEEEEeecccchHHHHHHHHhhhccceEEEEecccc
Q 001729 260 LIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLS-SFFKVHILHSSVDTEQALMAMKICKSHRKVILATNIAE 338 (1020)
Q Consensus 260 li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~-~~~~v~~lHs~l~~~er~~i~~~f~~grkVLVATniae 338 (1020)
.+.+.+..+.... .|+||||+||.++|+.+++.|.... .++.+.++||+|+.++|.++++.+ ++++|||||||||
T Consensus 266 ~i~~~I~~l~~~~---~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~-~~rkIVLATNIAE 341 (1283)
T TIGR01967 266 AILDAVDELFAEG---PGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH-SGRRIVLATNVAE 341 (1283)
T ss_pred HHHHHHHHHHhhC---CCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC-CCceEEEeccHHH
Confidence 3334444444332 4799999999999999999997543 357799999999999999988765 3469999999999
Q ss_pred ccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcccCCeeEEeechhhcccccccCCcceehhh
Q 001729 339 SSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFGTLEDHECPAILRLS 418 (1020)
Q Consensus 339 ~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~c~rLys~~~~~~l~~~~~PEI~r~~ 418 (1020)
+|||||+|+||||+|++|.++||+.++++.+.+.|||+++|.||+|||||.++|+||+||++++|+.+++++.|||+|++
T Consensus 342 tSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~~G~cyRLyte~~~~~~~~~~~PEIlR~~ 421 (1283)
T TIGR01967 342 TSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVAPGICIRLYSEEDFNSRPEFTDPEILRTN 421 (1283)
T ss_pred hccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCCCceEEEecCHHHHHhhhhccCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHhhccCccccCChhHHHhhhcCCCCccchhhHHHHHHHHhhhhhcCCCC-ccCccccchhccccccccceeEEE
Q 001729 419 LRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRG-RYEPTFYGRLLASFSLSFDASVLV 497 (1020)
Q Consensus 419 L~~~vL~l~~~~~~~l~~~~~~l~~~ldpP~~~~i~~al~~L~~lgald~~~~~g-~~~lT~lG~~~a~lpldp~~a~~l 497 (1020)
|.+++|+++.++ ++++..| +|++||+.++|.+|++.|.++||||.+ | ...||++|+.|++||+||++|+||
T Consensus 422 L~~viL~l~~lg---~~di~~f--~fldpP~~~~i~~A~~~L~~LGAld~~---~~~~~LT~lGr~ma~LPldPrlarmL 493 (1283)
T TIGR01967 422 LASVILQMLALR---LGDIAAF--PFIEAPDPRAIRDGFRLLEELGALDDD---EAEPQLTPIGRQLAQLPVDPRLARML 493 (1283)
T ss_pred HHHHHHHHHhcC---CCCcccc--cCCCCCCHHHHHHHHHHHHHCCCCCCC---CCCccccHHHHHHhhcCCChHHHHHH
Confidence 999999998655 4455445 899999999999999999999999874 3 236999999999999999999999
Q ss_pred EEeccchhhhhhhhhhhhccCCCccccCCCCccchhhhcccceecCCCCceeeeccceeeeecchhhHHHHHHHhhhhhh
Q 001729 498 LKFGEIGMLREGILLGILMDTQPLPILHPFGDDALFAEYTGCYFGGDGNTRLLTGRKEMVIMGNLCAFQFWQHVFKDKQR 577 (1020)
Q Consensus 498 l~~~~~gc~~e~l~Iaa~ls~~~~~~~~P~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~l~~l~af~~W~~~~~~~~~ 577 (1020)
+.+..+||++|+++|||+||+++ ||.+|.+++++++..+.+|.+++|| |++.+|+|+.|.+.....
T Consensus 494 l~a~~~gcl~e~l~IaA~Ls~~d-p~~~p~~~~~~a~~~~~~f~~~~sD-----------~l~~L~~~~~~~~~~~~~-- 559 (1283)
T TIGR01967 494 LEAHRLGCLQEVLIIASALSIQD-PRERPMEKQQAADQAHARFKDPRSD-----------FLSRVNLWRHIEEQRQAL-- 559 (1283)
T ss_pred HHhhhcCCHHHHHHHHHHHcCCC-cCCCcchhHHHHHHHHHHhcCCCCC-----------HHHHHHHHHHHHHhhhhc--
Confidence 99999999999999999999886 8989998888888888888877776 899999999997632110
Q ss_pred HHHHHHhhhccccccccccchhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhccccccccccCCC--------------
Q 001729 578 LDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKFLGTSNGL-------------- 643 (1020)
Q Consensus 578 ~~~l~~~~~~~~~~~~~~~~~~~~~~wC~~~fL~~~~l~~~~~i~~qL~~~~~~~~~~~~~~~~~~-------------- 643 (1020)
..+..++||++||||+.+|++|.+++.||.+++.++++...+.....
T Consensus 560 -------------------~~~~~~~~C~~~fL~~~~l~~~~~i~~QL~~~~~~~~~~~~~~~~~~~~i~~~l~~g~~~~ 620 (1283)
T TIGR01967 560 -------------------SANQFRNACRKQYLNYLRVREWQDIYRQLTQVVKELGLKLNEEPADYDAIHKALLSGLLSQ 620 (1283)
T ss_pred -------------------cchHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHcCCCcCCCCccHHHHHHHHHHhhHHH
Confidence 02345789999999999999999999999999988765432211000
Q ss_pred ------CCccCCccccc------eeEeeeCCCCCCCCccccCCCCCCCccccceee
Q 001729 644 ------PTYYDPYEFEH------TCLLNCDPPRDMDPLAADNEHLGPSFEAKKCVA 687 (1020)
Q Consensus 644 ------~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 687 (1020)
...|....... .++.+.-+.|++|++++.|+ +.|+|.|++
T Consensus 621 iA~~~~~~~y~~~~g~~~~ihP~S~L~~~~p~wvv~~elv~t~----~~~ir~~a~ 672 (1283)
T TIGR01967 621 IGMKDEKHEYDGARGRKFHIFPGSPLFKKPPKWVMAAELVETS----KLYARLVAK 672 (1283)
T ss_pred HheeCCCCcEEecCCcEEEECCCccccCCCCCEEEEeeecccc----hheEeeecc
Confidence 01122211111 11333457899999999887 689999887
No 9
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.4e-87 Score=759.78 Aligned_cols=448 Identities=31% Similarity=0.439 Sum_probs=390.3
Q ss_pred CCCCcccCcchhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcCCc--------cccccCCceehhhhHHHHHh
Q 001729 18 FTSPEFSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENME--------PILCTQPRRFAVVAVAKMVA 89 (1020)
Q Consensus 18 ~~~~~r~~LPi~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~~~--------~IivtqPrrlaa~sva~rva 89 (1020)
-.+..|..|||....++|+++|..|.+|||||+||||||||+||||+|+|.+ .|.+|||||+||+++|+||+
T Consensus 247 EIQ~sR~~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa 326 (1172)
T KOG0926|consen 247 EIQESRLDLPIVAEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVA 326 (1172)
T ss_pred HHHHHHhcCchhHHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHH
Confidence 3456688999999999999999999999999999999999999999999863 69999999999999999999
Q ss_pred hccccccCcccceeccccccccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhcc--
Q 001729 90 KGRNCELGGEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKK-- 167 (1020)
Q Consensus 90 ~e~~~~lg~~Vgy~i~~~~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~-- 167 (1020)
.|++. +|..|||+||++....++|.|.|||+|+|++++.++.+ +..|++|||||||||++++|++.++|.++...|
T Consensus 327 ~EL~~-~~~eVsYqIRfd~ti~e~T~IkFMTDGVLLrEi~~Dfl-L~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k 404 (1172)
T KOG0926|consen 327 FELGV-LGSEVSYQIRFDGTIGEDTSIKFMTDGVLLREIENDFL-LTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQK 404 (1172)
T ss_pred HHhcc-CccceeEEEEeccccCCCceeEEecchHHHHHHHHhHh-hhhceeEEechhhhccchHHHHHHHHHHHHHHHHH
Confidence 99998 89999999999999999999999999999999998853 669999999999999999999999998876543
Q ss_pred --------CCeEEEEeecccchhhhhH---HHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCcccccccc
Q 001729 168 --------NDLRVVLMSATADITKYRD---YFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELS 236 (1020)
Q Consensus 168 --------~~lkiIlmSATld~~~~~~---~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~ 236 (1020)
..+|+|+||||+..++|.+ .|.. +.+++.++. +.|||.++|-.
T Consensus 405 ~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi-----~pPlikVdA----RQfPVsIHF~k----------------- 458 (1172)
T KOG0926|consen 405 YYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPI-----PPPLIKVDA----RQFPVSIHFNK----------------- 458 (1172)
T ss_pred HhhhhcccCceeEEEEeeeEEecccccCceecCC-----CCceeeeec----ccCceEEEecc-----------------
Confidence 3699999999998777763 3322 234555554 67888776511
Q ss_pred ccccCCCCCCcccccccChhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhcccc-----------------
Q 001729 237 SLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL----------------- 299 (1020)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~----------------- 299 (1020)
.... ++..-..+-...||+..+ .|.||||+.|..+++.+++.|++.
T Consensus 459 ------rT~~---------DYi~eAfrKtc~IH~kLP--~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~ 521 (1172)
T KOG0926|consen 459 ------RTPD---------DYIAEAFRKTCKIHKKLP--PGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAF 521 (1172)
T ss_pred ------CCCc---------hHHHHHHHHHHHHhhcCC--CCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhc
Confidence 1111 111222244567888887 489999999999999988877510
Q ss_pred --------------------------------------------------------------------------------
Q 001729 300 -------------------------------------------------------------------------------- 299 (1020)
Q Consensus 300 -------------------------------------------------------------------------------- 299 (1020)
T Consensus 522 ~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~ 601 (1172)
T KOG0926|consen 522 KELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFS 601 (1172)
T ss_pred cccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCC
Confidence
Q ss_pred ccceEEEEeecccchHHHHHHHHhhhcc-ceEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhH
Q 001729 300 SSFFKVHILHSSVDTEQALMAMKICKSH-RKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQ 378 (1020)
Q Consensus 300 ~~~~~v~~lHs~l~~~er~~i~~~f~~g-rkVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas 378 (1020)
...+.|++||+-|+.+.|.+++.....| |-+|||||+||+|+|||+|+||||||++|.+.||..++++++.+.|||+|+
T Consensus 602 ~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkAS 681 (1172)
T KOG0926|consen 602 PGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKAS 681 (1172)
T ss_pred CCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccc
Confidence 0024588999999999999998876555 599999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCcccCCeeEEeechhhcc-cccccCCcceehhhHhHHHHHhhccCccccCChhHHHhhhcCCCCccchhhHH
Q 001729 379 AEQRRGRTGRTCDGQVYRLVTKSFFG-TLEDHECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDAL 457 (1020)
Q Consensus 379 ~~QR~GRAGR~~~G~c~rLys~~~~~-~l~~~~~PEI~r~~L~~~vL~l~~~~~~~l~~~~~~l~~~ldpP~~~~i~~al 457 (1020)
+.||+|||||++||+|||||+...|+ .++++..|||++.+.++++|+|++ |+.+.+..|+|++||+..++..|.
T Consensus 682 adQRAGRAGRtgpGHcYRLYSSAVf~~~Fe~fS~PEIlk~Pve~lvLqMKs-----MnI~kVvnFPFPtpPd~~~L~~Ae 756 (1172)
T KOG0926|consen 682 ADQRAGRAGRTGPGHCYRLYSSAVFSNDFEEFSLPEILKKPVESLVLQMKS-----MNIDKVVNFPFPTPPDRSALEKAE 756 (1172)
T ss_pred cchhccccCCCCCCceeehhhhHHhhcchhhhccHHHhhCcHHHHHHHHHh-----cCccceecCCCCCCccHHHHHHHH
Confidence 99999999999999999999999997 799999999999999999999964 555666777999999999999999
Q ss_pred HHHHHHhhhhhcCCCCccCccccchhccccccccceeEEEEEeccchhhhhhhhhhhhccCCC
Q 001729 458 DLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGEIGMLREGILLGILMDTQP 520 (1020)
Q Consensus 458 ~~L~~lgald~~~~~g~~~lT~lG~~~a~lpldp~~a~~ll~~~~~gc~~e~l~Iaa~ls~~~ 520 (1020)
..|..|||||.+ | .+|++|+.|+.|||.|+.+|||+.+.+.+|+--++.++++||++.
T Consensus 757 r~L~~LgALd~~---g--~lT~lGk~mS~FPlsPrfsKmL~~~~Q~~~lpy~i~lvsaLsv~e 814 (1172)
T KOG0926|consen 757 RRLKALGALDSN---G--GLTKLGKAMSLFPLSPRFSKMLATSDQHNLLPYNIALVSALSVYE 814 (1172)
T ss_pred HHHHHhcccccc---C--CcccccchhcccccChhHHHHHHHHHhhcchhHHHHHHHHHhccc
Confidence 999999999984 5 599999999999999999999999999999999999999999765
No 10
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=7.7e-76 Score=721.78 Aligned_cols=440 Identities=28% Similarity=0.351 Sum_probs=383.9
Q ss_pred cchhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcCC--ccccccCCceehhhhHHHHHhhccccccCccccee
Q 001729 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM--EPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYH 103 (1020)
Q Consensus 26 LPi~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~~--~~IivtqPrrlaa~sva~rva~e~~~~lg~~Vgy~ 103 (1020)
|||+++..++++++.+|+++||+|+|||||||++|+++++... .+|+|++|||++|+++++++++++++.+|..|||.
T Consensus 1 LPi~~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~ 80 (819)
T TIGR01970 1 LPIHAVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYR 80 (819)
T ss_pred CCchHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEE
Confidence 8999999999999999999999999999999999999998643 48999999999999999999999999999999999
Q ss_pred ccccccccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhh-ccCCeEEEEeecccchh
Q 001729 104 IGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLL-KKNDLRVVLMSATADIT 182 (1020)
Q Consensus 104 i~~~~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~-~~~~lkiIlmSATld~~ 182 (1020)
+++++..+.+++|+|+|+|+|++++..+. .+.+|++|||||+|||++++|+++++++.+.. .++++|+|+||||++.+
T Consensus 81 vr~~~~~s~~t~I~v~T~G~Llr~l~~d~-~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~ 159 (819)
T TIGR01970 81 VRGENKVSRRTRLEVVTEGILTRMIQDDP-ELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDGE 159 (819)
T ss_pred EccccccCCCCcEEEECCcHHHHHHhhCc-ccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCHH
Confidence 99999888899999999999999988653 56799999999999999999999988887765 47899999999999999
Q ss_pred hhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCcccccccChhHHHHHH
Q 001729 183 KYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIH 262 (1020)
Q Consensus 183 ~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 262 (1020)
.+.+||++ .+++.+++ +.||++++|+... . .......+.
T Consensus 160 ~l~~~l~~------~~vI~~~g----r~~pVe~~y~~~~-----------------------~--------~~~~~~~v~ 198 (819)
T TIGR01970 160 RLSSLLPD------APVVESEG----RSFPVEIRYLPLR-----------------------G--------DQRLEDAVS 198 (819)
T ss_pred HHHHHcCC------CcEEEecC----cceeeeeEEeecc-----------------------h--------hhhHHHHHH
Confidence 99999864 23444444 3466665553210 0 000111111
Q ss_pred HhhhhhccCCccccccEEEEecchhhHHHhhhhcccc-ccceEEEEeecccchHHHHHHHHhhhccc-eEEEEecccccc
Q 001729 263 DLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL-SSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESS 340 (1020)
Q Consensus 263 ~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~-~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVLVATniae~G 340 (1020)
..+..+.... .|+||||+||+++|+.+++.|... ..++.+.++||+|+.++|..+++.|++|+ ||||||||||+|
T Consensus 199 ~~l~~~l~~~---~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErg 275 (819)
T TIGR01970 199 RAVEHALASE---TGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETS 275 (819)
T ss_pred HHHHHHHHhc---CCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhc
Confidence 2222222222 379999999999999999999752 24689999999999999999999999887 999999999999
Q ss_pred ccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcccCCeeEEeechhhcccccccCCcceehhhHh
Q 001729 341 VTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFGTLEDHECPAILRLSLR 420 (1020)
Q Consensus 341 IdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~c~rLys~~~~~~l~~~~~PEI~r~~L~ 420 (1020)
||||+|++|||+|+.|.+.||+.++++.+.+.|||+++|.||+|||||.++|+||+||+++++..|.++..|||+|++|+
T Consensus 276 ItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~~~G~cyrL~t~~~~~~l~~~~~PEI~r~~L~ 355 (819)
T TIGR01970 276 LTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRLEPGVCYRLWSEEQHQRLPAQDEPEILQADLS 355 (819)
T ss_pred ccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCCCCCEEEEeCCHHHHHhhhcCCCcceeccCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCccccCChhHHHhhhcCCCCccchhhHHHHHHHHhhhhhcCCCCccCccccchhccccccccceeEEEEEe
Q 001729 421 LQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKF 500 (1020)
Q Consensus 421 ~~vL~l~~~~~~~l~~~~~~l~~~ldpP~~~~i~~al~~L~~lgald~~~~~g~~~lT~lG~~~a~lpldp~~a~~ll~~ 500 (1020)
.++|+++.++ +.++..| +|++||+..++..|++.|..+||||.+ | +||++|+.|++||+||++|+||+.+
T Consensus 356 ~~~L~l~~~g---~~~~~~~--~~l~~P~~~~i~~a~~~L~~lgald~~---~--~lT~~G~~~~~lp~~p~l~~~ll~~ 425 (819)
T TIGR01970 356 GLALELAQWG---AKDPSDL--RWLDAPPSVALAAARQLLQRLGALDAQ---G--RLTAHGKAMAALGCHPRLAAMLLSA 425 (819)
T ss_pred HHHHHHHHcC---CCChhhC--CCCCCcCHHHHHHHHHHHHHCCCCCCC---C--CcCHHHHHHHhcCCCHHHHHHHHHh
Confidence 9999998765 3344444 899999999999999999999999874 5 5999999999999999999999999
Q ss_pred ccchhhhhhhhhhhhccCCC
Q 001729 501 GEIGMLREGILLGILMDTQP 520 (1020)
Q Consensus 501 ~~~gc~~e~l~Iaa~ls~~~ 520 (1020)
..+||..++++|||+|+.++
T Consensus 426 ~~~~~~~~~~~iaa~ls~~~ 445 (819)
T TIGR01970 426 HSTGLAALACDLAALLEERG 445 (819)
T ss_pred hhcCCHHHHHHHHHHHcCCC
Confidence 99999999999999999765
No 11
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=2.8e-73 Score=700.87 Aligned_cols=438 Identities=25% Similarity=0.330 Sum_probs=376.8
Q ss_pred CcchhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcCC--ccccccCCceehhhhHHHHHhhccccccCcccce
Q 001729 25 SLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM--EPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (1020)
Q Consensus 25 ~LPi~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~~--~~IivtqPrrlaa~sva~rva~e~~~~lg~~Vgy 102 (1020)
+|||+.+..+|++++.+++++|++|+|||||||++|+++++... .+|+|++|||++|.+++++++++++..+|..|||
T Consensus 3 ~LPi~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy 82 (812)
T PRK11664 3 SLPVAAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGY 82 (812)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEE
Confidence 59999999999999999999999999999999999999998653 4899999999999999999999999999999999
Q ss_pred eccccccccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhh-ccCCeEEEEeecccch
Q 001729 103 HIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLL-KKNDLRVVLMSATADI 181 (1020)
Q Consensus 103 ~i~~~~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~-~~~~lkiIlmSATld~ 181 (1020)
.+++++..+.+++|+|+|+|+|++++..+. .+.++++|||||+|||++++|+++++++.++. .++++|+|+||||++.
T Consensus 83 ~vr~~~~~~~~t~I~v~T~G~Llr~l~~d~-~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~~ 161 (812)
T PRK11664 83 RMRAESKVGPNTRLEVVTEGILTRMIQRDP-ELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDN 161 (812)
T ss_pred EecCccccCCCCcEEEEChhHHHHHHhhCC-CcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCCH
Confidence 999999888899999999999999988653 56799999999999999999999998877765 4788999999999999
Q ss_pred hhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCcccccccChhHHHHH
Q 001729 182 TKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLI 261 (1020)
Q Consensus 182 ~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 261 (1020)
+.+.+||.+ .+++.+++ +.|+++.+|+.. ...+ ...+.+
T Consensus 162 ~~l~~~~~~------~~~I~~~g----r~~pV~~~y~~~-----------------------~~~~--------~~~~~v 200 (812)
T PRK11664 162 DRLQQLLPD------APVIVSEG----RSFPVERRYQPL-----------------------PAHQ--------RFDEAV 200 (812)
T ss_pred HHHHHhcCC------CCEEEecC----ccccceEEeccC-----------------------chhh--------hHHHHH
Confidence 999998864 23344444 345665555321 0000 011111
Q ss_pred HHhhhhhccCCccccccEEEEecchhhHHHhhhhccc-cccceEEEEeecccchHHHHHHHHhhhccc-eEEEEeccccc
Q 001729 262 HDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKP-LSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAES 339 (1020)
Q Consensus 262 ~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~-~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVLVATniae~ 339 (1020)
...+..+.... .|++|||+||+++++.+++.|.. ...++.+.++||+|+.++|..++..|++|+ +|||||||||+
T Consensus 201 ~~~l~~~l~~~---~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAEr 277 (812)
T PRK11664 201 ARATAELLRQE---SGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAET 277 (812)
T ss_pred HHHHHHHHHhC---CCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHh
Confidence 12222222221 47999999999999999999985 234688999999999999999999998887 99999999999
Q ss_pred cccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcccCCeeEEeechhhcccccccCCcceehhhH
Q 001729 340 SVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFGTLEDHECPAILRLSL 419 (1020)
Q Consensus 340 GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~c~rLys~~~~~~l~~~~~PEI~r~~L 419 (1020)
|||||+|++|||+|+.|...||+..+++.+...|||+++|.||+|||||.++|+||+||++++++.++++..|||+|++|
T Consensus 278 sLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~~G~cyrL~t~~~~~~l~~~~~PEI~r~dL 357 (812)
T PRK11664 278 SLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRLEPGICLHLYSKEQAERAAAQSEPEILHSDL 357 (812)
T ss_pred cccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCCCCcEEEEecCHHHHhhCccCCCCceeccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhccCccccCChhHHHhhhcCCCCccchhhHHHHHHHHhhhhhcCCCCccCccccchhccccccccceeEEEEE
Q 001729 420 RLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLK 499 (1020)
Q Consensus 420 ~~~vL~l~~~~~~~l~~~~~~l~~~ldpP~~~~i~~al~~L~~lgald~~~~~g~~~lT~lG~~~a~lpldp~~a~~ll~ 499 (1020)
+.++|.++.++. .++..| +|+|||+..++.+|++.|..+||||++ | +||++|+.|++||++|++|+||+.
T Consensus 358 ~~~~L~l~~~g~---~~~~~~--~~ld~P~~~~~~~A~~~L~~lgald~~---g--~lT~~G~~m~~lp~~Prla~~ll~ 427 (812)
T PRK11664 358 SGLLLELLQWGC---HDPAQL--SWLDQPPAAALAAAKRLLQQLGALDGQ---G--RLTARGRKMAALGNDPRLAAMLVA 427 (812)
T ss_pred HHHHHHHHHcCC---CCHHhC--CCCCCCCHHHHHHHHHHHHHCCCCCCC---C--CcCHHHHHHHhcCCchHHHHHHHH
Confidence 999999987653 344444 999999999999999999999999974 6 599999999999999999999999
Q ss_pred eccchhhh--hhhhhhhhcc
Q 001729 500 FGEIGMLR--EGILLGILMD 517 (1020)
Q Consensus 500 ~~~~gc~~--e~l~Iaa~ls 517 (1020)
+.++||.. .+..+||+|+
T Consensus 428 a~~~~~~~l~~a~~laall~ 447 (812)
T PRK11664 428 AKEDDEAALATAAKLAAILE 447 (812)
T ss_pred HHhcCchhhHHHHHHHHhhc
Confidence 99998643 5666677665
No 12
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=100.00 E-value=1.3e-54 Score=500.22 Aligned_cols=556 Identities=28% Similarity=0.427 Sum_probs=452.3
Q ss_pred CcccCcchhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcCC-------ccccccCCceehhhhHHHHHhhccc
Q 001729 21 PEFSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM-------EPILCTQPRRFAVVAVAKMVAKGRN 93 (1020)
Q Consensus 21 ~~r~~LPi~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~~-------~~IivtqPrrlaa~sva~rva~e~~ 93 (1020)
.+|.+||+..+.++|++++.+|++++|-++||+|||||+.++|||... ..++++||||+.|+++++|++.+++
T Consensus 372 a~re~lpva~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~ 451 (1282)
T KOG0921|consen 372 AQREELPVAQYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERG 451 (1282)
T ss_pred hhhhhCcHHHHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhH
Confidence 457789999999999999999999999999999999999999998744 2689999999999999999999999
Q ss_pred cccCcccceecccccccc-ccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhccCCeEE
Q 001729 94 CELGGEVGYHIGHSKHLS-ERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRV 172 (1020)
Q Consensus 94 ~~lg~~Vgy~i~~~~~~~-~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lki 172 (1020)
+.+|..|||++|+++.++ +...|.+||-|.+++.+... +..++|+|+||.|||.+++||++.+++.+....+++++
T Consensus 452 e~~g~tvgy~vRf~Sa~prpyg~i~fctvgvllr~~e~g---lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v 528 (1282)
T KOG0921|consen 452 EEVGETCGYNVRFDSATPRPYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRV 528 (1282)
T ss_pred Hhhcccccccccccccccccccceeeeccchhhhhhhhc---ccccccccchhhhhhccchHHHHHHHHhhhccchhhhh
Confidence 999999999999998874 45678999999999998865 34899999999999999999999999999999999999
Q ss_pred EEeecccchhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCcccccccccc--------------
Q 001729 173 VLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSL-------------- 238 (1020)
Q Consensus 173 IlmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~-------------- 238 (1020)
++||||+|.+.|..||.. ++...+++ +.||+..+|++++...+....+........
T Consensus 529 ~lmsatIdTd~f~~~f~~------~p~~~~~g----rt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~ 598 (1282)
T KOG0921|consen 529 VLMSATIDTDLFTNFFSS------IPDVTVHG----RTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKG 598 (1282)
T ss_pred hhhhcccchhhhhhhhcc------ccceeecc----ccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcc
Confidence 999999999999999986 33444444 789999999998766554322111100000
Q ss_pred ---------ccCCCCCCcccccccChhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccc-----cccceE
Q 001729 239 ---------RYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKP-----LSSFFK 304 (1020)
Q Consensus 239 ---------~~~~~~~~~~~~~~~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~-----~~~~~~ 304 (1020)
.|+.....++...........+++.++.+|.... ..|.||||+|++..+-.+...|.. ....+.
T Consensus 599 ~n~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~--i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ 676 (1282)
T KOG0921|consen 599 RNMNILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRN--IDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYE 676 (1282)
T ss_pred cccccccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccC--CccceeeecCchHHhhhhhhhhhhhhhhccchhcc
Confidence 0000000000001111223456666666665443 358999999999999998887752 234578
Q ss_pred EEEeecccchHHHHHHHHhhhccc-eEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhc
Q 001729 305 VHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRR 383 (1020)
Q Consensus 305 v~~lHs~l~~~er~~i~~~f~~gr-kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~ 383 (1020)
++++|+.++..++.++++....+. |+|++|+++|+++||.++++|||.++++.+.|-....+..+..+|.|+-+..||.
T Consensus 677 ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~ 756 (1282)
T KOG0921|consen 677 ILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRK 756 (1282)
T ss_pred cccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhc
Confidence 999999999999998888877666 9999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCeeEEeechhhcccccccCCcceehhhHhHHHHHhhccCccccCChhHHHhhhcCCCCccchhhHHHHHHHH
Q 001729 384 GRTGRTCDGQVYRLVTKSFFGTLEDHECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHK 463 (1020)
Q Consensus 384 GRAGR~~~G~c~rLys~~~~~~l~~~~~PEI~r~~L~~~vL~l~~~~~~~l~~~~~~l~~~ldpP~~~~i~~al~~L~~l 463 (1020)
||+||.++|.|++|.++..|+.+.++..||+.|.+|.++.|.++. ..++....|+...+.||+.++|..+-..|.++
T Consensus 757 gr~grvR~G~~f~lcs~arF~~l~~~~t~em~r~plhemalTikl---l~l~SI~~fl~kal~~~p~dav~e~e~~l~~m 833 (1282)
T KOG0921|consen 757 GRAGRVRPGFCFHLCSRARFEALEDHGTAEMFRTPLHEIALTIKL---LRLGSIGEFLGKALQPPPYDAVIEAEAVLREM 833 (1282)
T ss_pred ccCceecccccccccHHHHHHHHHhcCcHhhhcCccHHHHhhHHH---HHhhhHHHHHhhccCCCchhhccCchHHHHHh
Confidence 999999999999999999999999999999999999999988864 34667788999999999999999999999999
Q ss_pred hhhhhcCCCCccCccccchhccccccccceeEEEEEeccchhhhhhhhhhhhccCCCccccCCCCccchhhhcccceecC
Q 001729 464 RALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPFGDDALFAEYTGCYFGG 543 (1020)
Q Consensus 464 gald~~~~~g~~~lT~lG~~~a~lpldp~~a~~ll~~~~~gc~~e~l~Iaa~ls~~~~~~~~P~~~~~~a~~~~~~~~~~ 543 (1020)
+++|.+ .++|++|+.++++|++|.++++++.+.-+||..-++..|+.++... ++. |.+... +-.
T Consensus 834 ~~ld~n-----~elt~lg~~la~l~iep~~~k~~~lg~~~g~~~~m~~~as~~s~~~-~~~-~~~~~~--------~rl- 897 (1282)
T KOG0921|consen 834 GALDAN-----DELTPLGRMLARLPIEPRIGKMMILGTALGAGSVMCDVASAMSFPT-PFV-PREKHH--------SRL- 897 (1282)
T ss_pred hhhhcc-----CcccchhhhhhhccCcccccceeeechhhccchhhhhhhccccccc-ccc-cccccc--------ccc-
Confidence 999984 3799999999999999999999999999999988888888776432 333 211111 000
Q ss_pred CCCceeeeccceeeeecchhhHHHHHHHhhhhhhHHHHHHhhhccccccccccchhhhhhhhhhHHHHHhhhhhHHHHHH
Q 001729 544 DGNTRLLTGRKEMVIMGNLCAFQFWQHVFKDKQRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYE 623 (1020)
Q Consensus 544 ~~d~~~~~~~~~~~~l~~l~af~~W~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~wC~~~fL~~~~l~~~~~i~~ 623 (1020)
+|.....+|.|-++|.+...+-+.|.....+. .-.+++||....|+.+.|....+.+.
T Consensus 898 ~g~q~~~~g~kfsdhva~~~v~q~~r~~~q~g----------------------a~~e~efc~r~~l~~~~~~~t~~a~~ 955 (1282)
T KOG0921|consen 898 SGTQRKFAGNKFSDHVAIVSVIQGYREAVQMG----------------------AAAEREFCERYSLSNPVLKMTDGARR 955 (1282)
T ss_pred ccchhhccccccccchhhhhhhhhhHHHhhhh----------------------hhhhhhHhHhhhhcchhhhhhhhhHH
Confidence 11002234555666777777888888653321 22478999999999999999999999
Q ss_pred HHHHhhhcc
Q 001729 624 DILNAVHRF 632 (1020)
Q Consensus 624 qL~~~~~~~ 632 (1020)
||+..|+..
T Consensus 956 ql~d~L~q~ 964 (1282)
T KOG0921|consen 956 QLIDVLRQC 964 (1282)
T ss_pred HHHHHHHhc
Confidence 999999844
No 13
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=1.5e-52 Score=504.89 Aligned_cols=394 Identities=22% Similarity=0.265 Sum_probs=285.5
Q ss_pred hHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhc-----------------CCccccccCCceehhhhHHHHHhhccc
Q 001729 31 LREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE-----------------NMEPILCTQPRRFAVVAVAKMVAKGRN 93 (1020)
Q Consensus 31 ~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~-----------------~~~~IivtqPrrlaa~sva~rva~e~~ 93 (1020)
+|+++++.+++++++|++|+||||||+|+||++++. ...+|+|++|||.+|.+++.++.+..|
T Consensus 168 iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~vg 247 (675)
T PHA02653 168 VQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSLG 247 (675)
T ss_pred HHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHhC
Confidence 688999999999999999999999999999998752 113799999999999999998877655
Q ss_pred cccCcccceeccccccc-------cccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhc
Q 001729 94 CELGGEVGYHIGHSKHL-------SERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLK 166 (1020)
Q Consensus 94 ~~lg~~Vgy~i~~~~~~-------~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~ 166 (1020)
......+...+++.... ....+|+++|++..+. .+.++++|||||||||+..+|+++++++.+...
T Consensus 248 ~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~l~-------~L~~v~~VVIDEaHEr~~~~DllL~llk~~~~~ 320 (675)
T PHA02653 248 FDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLTLN-------KLFDYGTVIIDEVHEHDQIGDIIIAVARKHIDK 320 (675)
T ss_pred ccccCCceEEEEECCcchHHhhcccCCCCEEEEeCccccc-------ccccCCEEEccccccCccchhHHHHHHHHhhhh
Confidence 32111112222332221 1245799999875332 244899999999999999999999988876543
Q ss_pred cCCeEEEEeeccc--chhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCC
Q 001729 167 KNDLRVVLMSATA--DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGP 244 (1020)
Q Consensus 167 ~~~lkiIlmSATl--d~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~ 244 (1020)
. .|+++||||+ +.+.+.+||++ ..++.+++. ..++++..|++..... ..
T Consensus 321 ~--rq~ILmSATl~~dv~~l~~~~~~------p~~I~I~gr---t~~pV~~~yi~~~~~~------------------~~ 371 (675)
T PHA02653 321 I--RSLFLMTATLEDDRDRIKEFFPN------PAFVHIPGG---TLFPISEVYVKNKYNP------------------KN 371 (675)
T ss_pred c--CEEEEEccCCcHhHHHHHHHhcC------CcEEEeCCC---cCCCeEEEEeecCccc------------------cc
Confidence 2 3899999999 45678888864 234445532 2355655554321000 00
Q ss_pred CCcccccccChhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhh
Q 001729 245 SPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC 324 (1020)
Q Consensus 245 ~~~~~~~~~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f 324 (1020)
...+ ..... ..+...+... .+..++++|||+||+++++.+++.|.....++.+.++||+|++.+ ++++.|
T Consensus 372 ~~~y----~~~~k-~~~l~~L~~~---~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~e--q~l~~f 441 (675)
T PHA02653 372 KRAY----IEEEK-KNIVTALKKY---TPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNID--EILEKV 441 (675)
T ss_pred chhh----hHHHH-HHHHHHHHHh---hcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHHH--HHHHHH
Confidence 0000 00011 1111222111 111246899999999999999999985544688999999999753 444555
Q ss_pred -hccc-eEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcccCCeeEEeechhh
Q 001729 325 -KSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSF 402 (1020)
Q Consensus 325 -~~gr-kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~c~rLys~~~ 402 (1020)
++++ +||||||+||+|||||+|++|||+|+++.+. +..+. ..|||+++|.||+|||||.++|.||+||++++
T Consensus 442 f~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~--~~~g~----~~~iSkasa~QRaGRAGR~~~G~c~rLyt~~~ 515 (675)
T PHA02653 442 YSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPE--PFGGK----EMFISKSMRTQRKGRVGRVSPGTYVYFYDLDL 515 (675)
T ss_pred hccCceeEEeccChhhccccccCeeEEEECCCccCCC--cccCc----ccccCHHHHHHhccCcCCCCCCeEEEEECHHH
Confidence 5666 9999999999999999999999999877542 22222 46999999999999999999999999999987
Q ss_pred cccccccCCcceehhh---HhHHHHHhhccCccccCChhHHHhhhcCCCCccchhhHHHHHHHHhhhhhcCCCCccCccc
Q 001729 403 FGTLEDHECPAILRLS---LRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTF 479 (1020)
Q Consensus 403 ~~~l~~~~~PEI~r~~---L~~~vL~l~~~~~~~l~~~~~~l~~~ldpP~~~~i~~al~~L~~lgald~~~~~g~~~lT~ 479 (1020)
. .| |.|.+ |.+++|+++.++. +.+. + .|+|||+.+++.+|++.|..+||+|+ +||.
T Consensus 516 ~-------~p-I~ri~~~~L~~~vL~lk~~g~---~~~~-~--~~ldpP~~~~l~~A~~~L~~lga~~~-------~l~~ 574 (675)
T PHA02653 516 L-------KP-IKRIDSEFLHNYILYAKYFNL---TLPE-D--LFVIPSNLDRLRKTEEYIDSFNISIE-------KWYE 574 (675)
T ss_pred h-------HH-HHHHhHHHHHHHHHHHHHcCC---CCcc-c--ccCCCCCHHHHHHHHHHHHHcCCCch-------hhhh
Confidence 4 24 66666 8899999987763 3332 2 38999999999999999999998765 4999
Q ss_pred c--chhccccccccceeEEEEEec
Q 001729 480 Y--GRLLASFSLSFDASVLVLKFG 501 (1020)
Q Consensus 480 l--G~~~a~lpldp~~a~~ll~~~ 501 (1020)
+ |+.|+-+ +.||+++.++
T Consensus 575 l~~~~~~~~~----~~~k~~~~g~ 594 (675)
T PHA02653 575 ILSNYYVNML----EYAKIYVKGG 594 (675)
T ss_pred hhccccHHHH----HHhHHHhccc
Confidence 9 9999988 7788776553
No 14
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.3e-37 Score=384.97 Aligned_cols=415 Identities=14% Similarity=0.168 Sum_probs=270.5
Q ss_pred cchhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcC--CccccccCCceehhhhHHHHHhhccccccCccccee
Q 001729 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN--MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYH 103 (1020)
Q Consensus 26 LPi~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~--~~~IivtqPrrlaa~sva~rva~e~~~~lg~~Vgy~ 103 (1020)
..++++|.++++.+.++++++++||||||||+++.+++++.. ..+++++.|++.+|.+.++.+.... .+|..|+..
T Consensus 21 ~~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~raLa~q~~~~~~~l~--~~g~~v~~~ 98 (674)
T PRK01172 21 FELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLAMEKYEELSRLR--SLGMRVKIS 98 (674)
T ss_pred CCCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHHHHHHh--hcCCeEEEE
Confidence 457999999999999999999999999999988877776542 2467777899999999988876522 244455554
Q ss_pred cccccc---ccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccc---eeehhhhhHhhccCCeEEEEeec
Q 001729 104 IGHSKH---LSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESD---LVLVCVKQLLLKKNDLRVVLMSA 177 (1020)
Q Consensus 104 i~~~~~---~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d---~ll~~lk~ll~~~~~lkiIlmSA 177 (1020)
++..+. .....+|+|+|||.+...+......+.++++|||||+|+. .+.+ .+..++..+...+++.|+|+|||
T Consensus 99 ~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l-~d~~rg~~le~ll~~~~~~~~~~riI~lSA 177 (674)
T PRK01172 99 IGDYDDPPDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHII-GDEDRGPTLETVLSSARYVNPDARILALSA 177 (674)
T ss_pred eCCCCCChhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhc-cCCCccHHHHHHHHHHHhcCcCCcEEEEeC
Confidence 432221 1246799999999988877655444568999999999953 2222 22333444444567899999999
Q ss_pred cc-chhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhh--hHHHHHHHHhcCCccccccccccccCCCCCCcccccccC
Q 001729 178 TA-DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRV--SYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIK 254 (1020)
Q Consensus 178 Tl-d~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v--~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (1020)
|+ +++.+.+|++.. .+.... +..|... .|.. ..+.... . ...
T Consensus 178 Tl~n~~~la~wl~~~-------~~~~~~----r~vpl~~~i~~~~------------------~~~~~~~----~--~~~ 222 (674)
T PRK01172 178 TVSNANELAQWLNAS-------LIKSNF----RPVPLKLGILYRK------------------RLILDGY----E--RSQ 222 (674)
T ss_pred ccCCHHHHHHHhCCC-------ccCCCC----CCCCeEEEEEecC------------------eeeeccc----c--ccc
Confidence 98 788899998631 100000 0011100 0000 0000000 0 000
Q ss_pred hhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhcccccc-----------------------ceEEEEeecc
Q 001729 255 PEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSS-----------------------FFKVHILHSS 311 (1020)
Q Consensus 255 ~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~-----------------------~~~v~~lHs~ 311 (1020)
..... ++..... .++++|||++++++++.++..|..... ...+.++||+
T Consensus 223 ~~~~~----~i~~~~~----~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hag 294 (674)
T PRK01172 223 VDINS----LIKETVN----DGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAG 294 (674)
T ss_pred ccHHH----HHHHHHh----CCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCC
Confidence 01112 2222111 146899999999999998887753211 1247889999
Q ss_pred cchHHHHHHHHhhhccc-eEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCccc
Q 001729 312 VDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC 390 (1020)
Q Consensus 312 l~~~er~~i~~~f~~gr-kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~ 390 (1020)
|+.++|..+++.|++|. +|||||+++++|||+|+..+||+ +. .+|+. ....++|.+++.||+|||||.+
T Consensus 295 l~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII~-~~---~~~~~------~~~~~~s~~~~~Qm~GRAGR~g 364 (674)
T PRK01172 295 LSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIVR-DI---TRYGN------GGIRYLSNMEIKQMIGRAGRPG 364 (674)
T ss_pred CCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEEc-Cc---eEeCC------CCceeCCHHHHHHHhhcCCCCC
Confidence 99999999999999998 99999999999999999888885 11 12322 2235689999999999999984
Q ss_pred ---CCeeEEeech-hhcc---c-ccccCC--------cceehhhHhHHHHHhhccCccccCChhHHH---hhhcCCCC--
Q 001729 391 ---DGQVYRLVTK-SFFG---T-LEDHEC--------PAILRLSLRLQVLLICCAESKAISDPKVLL---QKALDPPY-- 449 (1020)
Q Consensus 391 ---~G~c~rLys~-~~~~---~-l~~~~~--------PEI~r~~L~~~vL~l~~~~~~~l~~~~~~l---~~~ldpP~-- 449 (1020)
.|.++.+... ++++ . +..... +++.+.++-..+.... ..+..+...|+ +-+.++++
T Consensus 365 ~d~~g~~~i~~~~~~~~~~~~~~l~~~~~pi~S~l~~~~~~~~~~l~~i~~g~---~~~~~d~~~~l~~tf~~~~~~~~~ 441 (674)
T PRK01172 365 YDQYGIGYIYAASPASYDAAKKYLSGEPEPVISYMGSQRKVRFNTLAAISMGL---ASSMEDLILFYNETLMAIQNGVDE 441 (674)
T ss_pred CCCcceEEEEecCcccHHHHHHHHcCCCCceeecCCCcccHHHHHHHHHHhcc---cCCHHHHHHHHHhhhhHhcCchHH
Confidence 6777776443 3222 2 212211 2333433322222211 12222333332 12223322
Q ss_pred -ccchhhHHHHHHHHhhhhhcCCCCccCccccchhccccccccceeEEEEEecc
Q 001729 450 -PEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGE 502 (1020)
Q Consensus 450 -~~~i~~al~~L~~lgald~~~~~g~~~lT~lG~~~a~lpldp~~a~~ll~~~~ 502 (1020)
.+.|.+|++.|.+.|+|+.+ +.+.+|++|++++.+|++|..++.+..+..
T Consensus 442 l~~~v~~~l~~L~~~~~i~~~---~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~ 492 (674)
T PRK01172 442 IDYYIESSLKFLKENGFIKGD---VTLRATRLGKLTSDLYIDPESALILKSAFD 492 (674)
T ss_pred HHHHHHHHHHHHHHCCCcccC---CcEeECHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 46799999999999999863 446799999999999999999987765443
No 15
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.8e-36 Score=343.84 Aligned_cols=316 Identities=19% Similarity=0.225 Sum_probs=235.7
Q ss_pred hhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcC-----------CccccccCCceehhhhHHHHHhhcccccc
Q 001729 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN-----------MEPILCTQPRRFAVVAVAKMVAKGRNCEL 96 (1020)
Q Consensus 28 i~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~-----------~~~IivtqPrrlaa~sva~rva~e~~~~l 96 (1020)
.+++|.+.++.++.++++|..+.||||||..+.++++... ...++|+.|+|.+|.|+.+...+... .+
T Consensus 114 PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~~~-~~ 192 (519)
T KOG0331|consen 114 PTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREFGK-SL 192 (519)
T ss_pred CchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHHcC-CC
Confidence 5689999999999999999999999999966655544321 12699999999999999876655322 22
Q ss_pred C--ccccee---c-cccccccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhc-cCC
Q 001729 97 G--GEVGYH---I-GHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLK-KND 169 (1020)
Q Consensus 97 g--~~Vgy~---i-~~~~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~-~~~ 169 (1020)
+ ..+-|- . .+......+.+|+++|||+|+.++..+.+.+.+++++|+|||| |+++.+|-..+-+.+... +++
T Consensus 193 ~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEAD-rMldmGFe~qI~~Il~~i~~~~ 271 (519)
T KOG0331|consen 193 RLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEAD-RMLDMGFEPQIRKILSQIPRPD 271 (519)
T ss_pred CccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHH-hhhccccHHHHHHHHHhcCCCc
Confidence 2 111111 1 2334456678999999999999999988888899999999999 999999988888888777 666
Q ss_pred eEEEEeecccchh--hhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCc
Q 001729 170 LRVVLMSATADIT--KYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPS 247 (1020)
Q Consensus 170 lkiIlmSATld~~--~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 247 (1020)
.|+++.|||.+.+ .++.-|- .....+.+..... .... .-+.++.
T Consensus 272 rQtlm~saTwp~~v~~lA~~fl--~~~~~i~ig~~~~--~~a~-----~~i~qiv------------------------- 317 (519)
T KOG0331|consen 272 RQTLMFSATWPKEVRQLAEDFL--NNPIQINVGNKKE--LKAN-----HNIRQIV------------------------- 317 (519)
T ss_pred ccEEEEeeeccHHHHHHHHHHh--cCceEEEecchhh--hhhh-----cchhhhh-------------------------
Confidence 6899999998543 3333332 2222222221110 0000 0000000
Q ss_pred ccccccChhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhcc
Q 001729 248 MANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSH 327 (1020)
Q Consensus 248 ~~~~~~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~g 327 (1020)
..-........+.+++..+. . +.++++||||.++..++++...|+. .++.+..+||+.++.||..+++.|++|
T Consensus 318 --e~~~~~~K~~~l~~lL~~~~-~--~~~~KvIIFc~tkr~~~~l~~~l~~--~~~~a~~iHGd~sQ~eR~~~L~~FreG 390 (519)
T KOG0331|consen 318 --EVCDETAKLRKLGKLLEDIS-S--DSEGKVIIFCETKRTCDELARNLRR--KGWPAVAIHGDKSQSERDWVLKGFREG 390 (519)
T ss_pred --hhcCHHHHHHHHHHHHHHHh-c--cCCCcEEEEecchhhHHHHHHHHHh--cCcceeeecccccHHHHHHHHHhcccC
Confidence 00002233344555665555 2 2257999999999999999999983 348899999999999999999999999
Q ss_pred c-eEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc-cCCeeEEeechhhcc
Q 001729 328 R-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (1020)
Q Consensus 328 r-kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c~rLys~~~~~ 404 (1020)
+ .||||||+|++|||||+|++||+ ||+|.+++.| +||.||+||. +.|.+|.+++...+.
T Consensus 391 ~~~vLVATdVAaRGLDi~dV~lVIn--------ydfP~~vEdY----------VHRiGRTGRa~~~G~A~tfft~~~~~ 451 (519)
T KOG0331|consen 391 KSPVLVATDVAARGLDVPDVDLVIN--------YDFPNNVEDY----------VHRIGRTGRAGKKGTAITFFTSDNAK 451 (519)
T ss_pred CcceEEEcccccccCCCccccEEEe--------CCCCCCHHHH----------HhhcCccccCCCCceEEEEEeHHHHH
Confidence 9 99999999999999999999999 9999988877 9999999997 789999999987654
No 16
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.6e-36 Score=323.93 Aligned_cols=310 Identities=23% Similarity=0.325 Sum_probs=230.3
Q ss_pred hhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcCCc-----cccccCCceehhhhHHHHHhhccccccCcccce
Q 001729 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENME-----PILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (1020)
Q Consensus 28 i~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~~~-----~IivtqPrrlaa~sva~rva~e~~~~lg~~Vgy 102 (1020)
.+++|.++++.++.|++||..|+||||||.++..+|++..+. ..+|+.|+|.+|.|+++.... +|..+|-.|..
T Consensus 84 PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~-Lg~~iglr~~~ 162 (476)
T KOG0330|consen 84 PTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEA-LGSGIGLRVAV 162 (476)
T ss_pred CchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHH-hccccCeEEEE
Confidence 467899999999999999999999999998888888776543 578889999999999886533 33333333222
Q ss_pred eccc------cccccccceEEeeechhhhHHHH-HhccccceeEEEEeecccccccccceeehhhhhHhhccCCeEEEEe
Q 001729 103 HIGH------SKHLSERSKIVFKTAGVLLDEMR-DRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLM 175 (1020)
Q Consensus 103 ~i~~------~~~~~~~t~Iiv~Tpg~Ll~~l~-~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlm 175 (1020)
.++. .......++|+|+|||.|.+.+. .+.+++.+++++|+|||+ |.++.||...+-+.+...+.+.|.+++
T Consensus 163 lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEAD-rlLd~dF~~~ld~ILk~ip~erqt~Lf 241 (476)
T KOG0330|consen 163 LVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEAD-RLLDMDFEEELDYILKVIPRERQTFLF 241 (476)
T ss_pred EecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHH-hhhhhhhHHHHHHHHHhcCccceEEEE
Confidence 2232 23457789999999999999988 567777899999999999 999999988877777677788999999
Q ss_pred ecccchhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCcccccccCh
Q 001729 176 SATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKP 255 (1020)
Q Consensus 176 SATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (1020)
|||+... ..+.... ....++.+. ++.. |. -++.+.+ .|...+..+ .+
T Consensus 242 sATMt~k-v~kL~ra-sl~~p~~v~-~s~k-----y~----tv~~lkQ---------------~ylfv~~k~-K~----- 288 (476)
T KOG0330|consen 242 SATMTKK-VRKLQRA-SLDNPVKVA-VSSK-----YQ----TVDHLKQ---------------TYLFVPGKD-KD----- 288 (476)
T ss_pred Eeecchh-hHHHHhh-ccCCCeEEe-ccch-----hc----chHHhhh---------------heEeccccc-cc-----
Confidence 9998522 2222221 112333332 1111 10 0111111 111111000 00
Q ss_pred hHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc-eEEEEe
Q 001729 256 EVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILAT 334 (1020)
Q Consensus 256 ~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVLVAT 334 (1020)
. .+..++. .. .++++||||++....+.++-.|+ ..++...++||.|++..|...++.|+.+. .|||||
T Consensus 289 ~---yLV~ll~----e~--~g~s~iVF~~t~~tt~~la~~L~--~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~T 357 (476)
T KOG0330|consen 289 T---YLVYLLN----EL--AGNSVIVFCNTCNTTRFLALLLR--NLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCT 357 (476)
T ss_pred h---hHHHHHH----hh--cCCcEEEEEeccchHHHHHHHHH--hcCcceecccchhhHHHHHHHHHHHhccCCcEEEec
Confidence 0 0112222 11 14699999999999999999998 45689999999999999999999999987 999999
Q ss_pred ccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc-cCCeeEEeechh
Q 001729 335 NIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKS 401 (1020)
Q Consensus 335 niae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c~rLys~~ 401 (1020)
|++.+|+|||.|++||| ||.|.....| +||+||+||. ++|+++.|++.-
T Consensus 358 DVaSRGLDip~Vd~VVN--------yDiP~~skDY----------IHRvGRtaRaGrsG~~ItlVtqy 407 (476)
T KOG0330|consen 358 DVASRGLDIPHVDVVVN--------YDIPTHSKDY----------IHRVGRTARAGRSGKAITLVTQY 407 (476)
T ss_pred chhcccCCCCCceEEEe--------cCCCCcHHHH----------HHHcccccccCCCcceEEEEehh
Confidence 99999999999999999 9999976665 9999999999 789999999973
No 17
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1e-35 Score=370.59 Aligned_cols=420 Identities=18% Similarity=0.177 Sum_probs=272.9
Q ss_pred chhhhHHHHHHH-HhhccEEEEecCCCCCCcCChhhhhhhcC--CccccccCCceehhhhHHHHHhhccccccCccccee
Q 001729 27 PVMSLREKIVEK-VLENRVTLIVGETGCGKSSQVPQFLLAEN--MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYH 103 (1020)
Q Consensus 27 Pi~~~Q~eil~~-i~~~~~vII~apTGSGKTt~ip~~lle~~--~~~IivtqPrrlaa~sva~rva~e~~~~lg~~Vgy~ 103 (1020)
-++++|.++++. +.+++++++++|||||||..+...++... .++++++.|++.+|.+..+.+.. ++ ..|..|+..
T Consensus 23 ~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~~kal~i~P~raLa~q~~~~~~~-~~-~~g~~v~~~ 100 (737)
T PRK02362 23 ELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARGGKALYIVPLRALASEKFEEFER-FE-ELGVRVGIS 100 (737)
T ss_pred cCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHHHH-hh-cCCCEEEEE
Confidence 377899999998 78899999999999999988777766542 35788899999999999988875 32 123333322
Q ss_pred cccc---ccccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccce---eehhhhhHhhccCCeEEEEeec
Q 001729 104 IGHS---KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDL---VLVCVKQLLLKKNDLRVVLMSA 177 (1020)
Q Consensus 104 i~~~---~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~---ll~~lk~ll~~~~~lkiIlmSA 177 (1020)
.+.. .......+|+|+||+++...+......+.++++|||||+| +..+.++ +..++.++....++.|+|+|||
T Consensus 101 tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H-~l~d~~rg~~le~il~rl~~~~~~~qii~lSA 179 (737)
T PRK02362 101 TGDYDSRDEWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVH-LIDSANRGPTLEVTLAKLRRLNPDLQVVALSA 179 (737)
T ss_pred eCCcCccccccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECcc-ccCCCcchHHHHHHHHHHHhcCCCCcEEEEcc
Confidence 2211 1122457999999999988877544345689999999999 3333332 2233455555567899999999
Q ss_pred cc-chhhhhHHHhhcCC---cceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCccccccc
Q 001729 178 TA-DITKYRDYFRDLGR---GERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEI 253 (1020)
Q Consensus 178 Tl-d~~~~~~~f~~~~~---~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (1020)
|+ +++.+.+|++.... ..|+++.. .+.+-.. ..+.. .... .....
T Consensus 180 Tl~n~~~la~wl~~~~~~~~~rpv~l~~------------~v~~~~~-----------------~~~~~-~~~~-~~~~~ 228 (737)
T PRK02362 180 TIGNADELADWLDAELVDSEWRPIDLRE------------GVFYGGA-----------------IHFDD-SQRE-VEVPS 228 (737)
T ss_pred cCCCHHHHHHHhCCCcccCCCCCCCCee------------eEecCCe-----------------ecccc-cccc-CCCcc
Confidence 98 78889999863100 00111100 0000000 00000 0000 00000
Q ss_pred ChhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhcccccc--------------------------------
Q 001729 254 KPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSS-------------------------------- 301 (1020)
Q Consensus 254 ~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~-------------------------------- 301 (1020)
.......+.+.+ . .++++||||+++++++.++..|.....
T Consensus 229 ~~~~~~~~~~~~----~----~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~ 300 (737)
T PRK02362 229 KDDTLNLVLDTL----E----EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLAD 300 (737)
T ss_pred chHHHHHHHHHH----H----cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHH
Confidence 111222222222 1 146899999999999988777653210
Q ss_pred --ceEEEEeecccchHHHHHHHHhhhccc-eEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhH
Q 001729 302 --FFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQ 378 (1020)
Q Consensus 302 --~~~v~~lHs~l~~~er~~i~~~f~~gr-kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas 378 (1020)
...+.++||+|+.++|..+++.|++|. +|||||+++++|||+|++++||+. ..+||...+. .|+|.++
T Consensus 301 ~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~----~~~yd~~~g~-----~~~s~~~ 371 (737)
T PRK02362 301 CVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRD----YRRYDGGAGM-----QPIPVLE 371 (737)
T ss_pred HHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEec----ceeecCCCCc-----eeCCHHH
Confidence 136889999999999999999999999 999999999999999999999962 2347754322 5779999
Q ss_pred HHHhcCCCCccc---CCeeEEeechhh-----cccccccCCcceehh------hHhHHHHHhhccC-ccccCChhHHH-h
Q 001729 379 AEQRRGRTGRTC---DGQVYRLVTKSF-----FGTLEDHECPAILRL------SLRLQVLLICCAE-SKAISDPKVLL-Q 442 (1020)
Q Consensus 379 ~~QR~GRAGR~~---~G~c~rLys~~~-----~~~l~~~~~PEI~r~------~L~~~vL~l~~~~-~~~l~~~~~~l-~ 442 (1020)
|.||+|||||.+ .|.++.+....+ |+.+.. ..||-..+ .|...++...+.+ .....+...|+ .
T Consensus 372 y~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~l~-~~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~~~~l~~ 450 (737)
T PRK02362 372 YHQMAGRAGRPGLDPYGEAVLLAKSYDELDELFERYIW-ADPEDVRSKLATEPALRTHVLSTIASGFARTRDGLLEFLEA 450 (737)
T ss_pred HHHHhhcCCCCCCCCCceEEEEecCchhHHHHHHHHHh-CCCCceeecCCChhhHHHHHHHHHHhCccCCHHHHHHHHHh
Confidence 999999999983 499999986531 222211 12332222 2444444433222 12222222232 1
Q ss_pred hhcCCCC------ccchhhHHHHHHHHhhhhhcCCCCccCccccchhccccccccceeEEEEEe
Q 001729 443 KALDPPY------PEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKF 500 (1020)
Q Consensus 443 ~~ldpP~------~~~i~~al~~L~~lgald~~~~~g~~~lT~lG~~~a~lpldp~~a~~ll~~ 500 (1020)
.|+..+. .+.+..+++.|.+.|+|+.++ +.+.+|++|++++.++++|..+..+..+
T Consensus 451 Tf~~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~--~~~~~t~lG~~~s~~~l~~~t~~~~~~~ 512 (737)
T PRK02362 451 TFYATQTDDTGRLERVVDDVLDFLERNGMIEEDG--ETLEATELGHLVSRLYIDPLSAAEIIDG 512 (737)
T ss_pred ChHHhhccchHHHHHHHHHHHHHHHHCCCeeecC--CeEeEChHHHHHHHhcCCHHHHHHHHHH
Confidence 2333322 245899999999999998732 4477999999999999999988766544
No 18
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=6e-35 Score=346.32 Aligned_cols=310 Identities=21% Similarity=0.258 Sum_probs=220.3
Q ss_pred hhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcCC-----ccccccCCceehhhhHHHHHhhcc----ccccCc
Q 001729 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM-----EPILCTQPRRFAVVAVAKMVAKGR----NCELGG 98 (1020)
Q Consensus 28 i~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~~-----~~IivtqPrrlaa~sva~rva~e~----~~~lg~ 98 (1020)
++++|.++++.+.+++++|++||||||||+++..++++... ..++++.|+|.+|.|+++.+.... +..+..
T Consensus 27 ~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~ 106 (460)
T PRK11776 27 MTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLT 106 (460)
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 67899999999999999999999999999888777776432 257788899999999988665432 122111
Q ss_pred cccee-cc-ccccccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhccCCeEEEEee
Q 001729 99 EVGYH-IG-HSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (1020)
Q Consensus 99 ~Vgy~-i~-~~~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmS 176 (1020)
..|.. +. .......+++|+|+|||.|.+.+..+.+.+.++++||||||| +.++.++...+...+....++.+++++|
T Consensus 107 ~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad-~~l~~g~~~~l~~i~~~~~~~~q~ll~S 185 (460)
T PRK11776 107 LCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEAD-RMLDMGFQDAIDAIIRQAPARRQTLLFS 185 (460)
T ss_pred EECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHH-HHhCcCcHHHHHHHHHhCCcccEEEEEE
Confidence 11111 10 111234578999999999999988776667799999999999 6777776655555555556678999999
Q ss_pred cccchh--hhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCcccccccC
Q 001729 177 ATADIT--KYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIK 254 (1020)
Q Consensus 177 ATld~~--~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (1020)
||++.. .+...+.. .+..+......... .+ ...+... . .
T Consensus 186 AT~~~~~~~l~~~~~~----~~~~i~~~~~~~~~---~i-----------------------~~~~~~~--------~-~ 226 (460)
T PRK11776 186 ATYPEGIAAISQRFQR----DPVEVKVESTHDLP---AI-----------------------EQRFYEV--------S-P 226 (460)
T ss_pred ecCcHHHHHHHHHhcC----CCEEEEECcCCCCC---Ce-----------------------eEEEEEe--------C-c
Confidence 998532 33333211 12222111110000 00 0000000 0 0
Q ss_pred hhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc-eEEEE
Q 001729 255 PEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILA 333 (1020)
Q Consensus 255 ~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVLVA 333 (1020)
....+.+..++. ... .+++||||+++++++.+++.|.. .++.+..+||+|++.+|..+++.|++|. +||||
T Consensus 227 ~~k~~~l~~ll~----~~~--~~~~lVF~~t~~~~~~l~~~L~~--~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVa 298 (460)
T PRK11776 227 DERLPALQRLLL----HHQ--PESCVVFCNTKKECQEVADALNA--QGFSALALHGDLEQRDRDQVLVRFANRSCSVLVA 298 (460)
T ss_pred HHHHHHHHHHHH----hcC--CCceEEEECCHHHHHHHHHHHHh--CCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEE
Confidence 111222333332 111 35899999999999999999984 4588999999999999999999999998 99999
Q ss_pred eccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc-cCCeeEEeechhhc
Q 001729 334 TNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFF 403 (1020)
Q Consensus 334 Tniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c~rLys~~~~ 403 (1020)
|+++++|||+|++++||+ ||.|...+ +|+||+|||||. +.|.||.|+++++.
T Consensus 299 Tdv~~rGiDi~~v~~VI~--------~d~p~~~~----------~yiqR~GRtGR~g~~G~ai~l~~~~e~ 351 (460)
T PRK11776 299 TDVAARGLDIKALEAVIN--------YELARDPE----------VHVHRIGRTGRAGSKGLALSLVAPEEM 351 (460)
T ss_pred ecccccccchhcCCeEEE--------ecCCCCHh----------HhhhhcccccCCCCcceEEEEEchhHH
Confidence 999999999999999999 88887544 459999999999 68999999998644
No 19
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.1e-34 Score=340.48 Aligned_cols=311 Identities=21% Similarity=0.270 Sum_probs=216.3
Q ss_pred hhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcC------------CccccccCCceehhhhHHHHHhhccccc
Q 001729 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN------------MEPILCTQPRRFAVVAVAKMVAKGRNCE 95 (1020)
Q Consensus 28 i~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~------------~~~IivtqPrrlaa~sva~rva~e~~~~ 95 (1020)
.+++|.++++.++++++++++||||||||+++..++++.. ..+++++.|+|.+|.|+.+.+.... ..
T Consensus 31 pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~l~-~~ 109 (423)
T PRK04837 31 CTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEPLA-QA 109 (423)
T ss_pred CCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHHHh-cc
Confidence 4689999999999999999999999999987776665321 1368999999999999876543321 12
Q ss_pred cCcccceeccccc------cccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhcc--
Q 001729 96 LGGEVGYHIGHSK------HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKK-- 167 (1020)
Q Consensus 96 lg~~Vgy~i~~~~------~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~-- 167 (1020)
.|..++..++... ....+++|+|+|||+|++.+....+.+.++++||||||| +.++.++...+ +.++..-
T Consensus 110 ~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad-~l~~~~f~~~i-~~i~~~~~~ 187 (423)
T PRK04837 110 TGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD-RMFDLGFIKDI-RWLFRRMPP 187 (423)
T ss_pred CCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHH-HHhhcccHHHH-HHHHHhCCC
Confidence 2333333222211 224467999999999999988777777799999999999 56666655444 3333222
Q ss_pred -CCeEEEEeecccchhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCC
Q 001729 168 -NDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSP 246 (1020)
Q Consensus 168 -~~lkiIlmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 246 (1020)
...+.+++|||++.....-.+..+... ..+...+....... .... ..+
T Consensus 188 ~~~~~~~l~SAT~~~~~~~~~~~~~~~p--~~i~v~~~~~~~~~--------------------i~~~---~~~------ 236 (423)
T PRK04837 188 ANQRLNMLFSATLSYRVRELAFEHMNNP--EYVEVEPEQKTGHR--------------------IKEE---LFY------ 236 (423)
T ss_pred ccceeEEEEeccCCHHHHHHHHHHCCCC--EEEEEcCCCcCCCc--------------------eeEE---EEe------
Confidence 245679999998654332222222222 11111111000000 0000 000
Q ss_pred cccccccChhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhc
Q 001729 247 SMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKS 326 (1020)
Q Consensus 247 ~~~~~~~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~ 326 (1020)
.........+..++. .. ..+++||||+++..++.+++.|.. .++.+..+||+|+.++|..+++.|+.
T Consensus 237 -----~~~~~k~~~l~~ll~----~~--~~~~~lVF~~t~~~~~~l~~~L~~--~g~~v~~lhg~~~~~~R~~~l~~F~~ 303 (423)
T PRK04837 237 -----PSNEEKMRLLQTLIE----EE--WPDRAIIFANTKHRCEEIWGHLAA--DGHRVGLLTGDVAQKKRLRILEEFTR 303 (423)
T ss_pred -----CCHHHHHHHHHHHHH----hc--CCCeEEEEECCHHHHHHHHHHHHh--CCCcEEEecCCCChhHHHHHHHHHHc
Confidence 000111222333322 11 136899999999999999999974 45889999999999999999999999
Q ss_pred cc-eEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc-cCCeeEEeechhhc
Q 001729 327 HR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFF 403 (1020)
Q Consensus 327 gr-kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c~rLys~~~~ 403 (1020)
|+ +|||||+++++|||+|+|++||+ ||.|.....| .||+|||||. +.|.++.++++++.
T Consensus 304 g~~~vLVaTdv~~rGiDip~v~~VI~--------~d~P~s~~~y----------iqR~GR~gR~G~~G~ai~~~~~~~~ 364 (423)
T PRK04837 304 GDLDILVATDVAARGLHIPAVTHVFN--------YDLPDDCEDY----------VHRIGRTGRAGASGHSISLACEEYA 364 (423)
T ss_pred CCCcEEEEechhhcCCCccccCEEEE--------eCCCCchhhe----------EeccccccCCCCCeeEEEEeCHHHH
Confidence 99 99999999999999999999999 9999866555 9999999999 68999999998654
No 20
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.8e-34 Score=346.75 Aligned_cols=314 Identities=19% Similarity=0.222 Sum_probs=221.4
Q ss_pred hhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcC----------CccccccCCceehhhhHHHHHhhccccccC
Q 001729 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN----------MEPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (1020)
Q Consensus 28 i~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~----------~~~IivtqPrrlaa~sva~rva~e~~~~lg 97 (1020)
.+++|.++++.+++++++|++||||||||+++..+++... ...++++.|+|.+|.|+.+.+.... ...+
T Consensus 153 pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~-~~~~ 231 (545)
T PTZ00110 153 PTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFG-ASSK 231 (545)
T ss_pred CCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHh-cccC
Confidence 6789999999999999999999999999977655544321 1257889999999999887765532 1112
Q ss_pred cccceecccc------ccccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhccCCeE
Q 001729 98 GEVGYHIGHS------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLR 171 (1020)
Q Consensus 98 ~~Vgy~i~~~------~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lk 171 (1020)
..+....+.. .......+|+|+|||+|++.+......+.++++||||||| |.++.+|...+.+.+...+++.+
T Consensus 232 i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd-~mld~gf~~~i~~il~~~~~~~q 310 (545)
T PTZ00110 232 IRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEAD-RMLDMGFEPQIRKIVSQIRPDRQ 310 (545)
T ss_pred ccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHH-hhhhcchHHHHHHHHHhCCCCCe
Confidence 1111111111 1224468999999999999988776667799999999999 78888877666666666678899
Q ss_pred EEEeecccchh--hhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCccc
Q 001729 172 VVLMSATADIT--KYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMA 249 (1020)
Q Consensus 172 iIlmSATld~~--~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1020)
++++|||++.+ .+.+.+- ...++.+. +........ .......
T Consensus 311 ~l~~SAT~p~~v~~l~~~l~---~~~~v~i~-vg~~~l~~~------------------~~i~q~~-------------- 354 (545)
T PTZ00110 311 TLMWSATWPKEVQSLARDLC---KEEPVHVN-VGSLDLTAC------------------HNIKQEV-------------- 354 (545)
T ss_pred EEEEEeCCCHHHHHHHHHHh---ccCCEEEE-ECCCccccC------------------CCeeEEE--------------
Confidence 99999998533 2333221 11122211 110000000 0000000
Q ss_pred ccccChhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc-
Q 001729 250 NAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR- 328 (1020)
Q Consensus 250 ~~~~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr- 328 (1020)
...........+.+++..+.. ..+++||||++++.++.+++.|. ..++.+..+||++++++|..+++.|+.++
T Consensus 355 ~~~~~~~k~~~L~~ll~~~~~----~~~k~LIF~~t~~~a~~l~~~L~--~~g~~~~~ihg~~~~~eR~~il~~F~~G~~ 428 (545)
T PTZ00110 355 FVVEEHEKRGKLKMLLQRIMR----DGDKILIFVETKKGADFLTKELR--LDGWPALCIHGDKKQEERTWVLNEFKTGKS 428 (545)
T ss_pred EEEechhHHHHHHHHHHHhcc----cCCeEEEEecChHHHHHHHHHHH--HcCCcEEEEECCCcHHHHHHHHHHHhcCCC
Confidence 000001112223334433332 14699999999999999999997 34578899999999999999999999998
Q ss_pred eEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc-cCCeeEEeechhhc
Q 001729 329 KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFF 403 (1020)
Q Consensus 329 kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c~rLys~~~~ 403 (1020)
+|||||+++++|||||+|++||+ ||.|... .+|+||+||+||. ..|.||.++++++.
T Consensus 429 ~ILVaTdv~~rGIDi~~v~~VI~--------~d~P~s~----------~~yvqRiGRtGR~G~~G~ai~~~~~~~~ 486 (545)
T PTZ00110 429 PIMIATDVASRGLDVKDVKYVIN--------FDFPNQI----------EDYVHRIGRTGRAGAKGASYTFLTPDKY 486 (545)
T ss_pred cEEEEcchhhcCCCcccCCEEEE--------eCCCCCH----------HHHHHHhcccccCCCCceEEEEECcchH
Confidence 99999999999999999999999 9998854 4559999999999 68999999997644
No 21
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=1.6e-34 Score=340.50 Aligned_cols=317 Identities=23% Similarity=0.269 Sum_probs=224.5
Q ss_pred chhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhc---------CCccccccCCceehhhhHHHHHhh---cccc
Q 001729 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE---------NMEPILCTQPRRFAVVAVAKMVAK---GRNC 94 (1020)
Q Consensus 27 Pi~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~---------~~~~IivtqPrrlaa~sva~rva~---e~~~ 94 (1020)
.++++|.++++++.++++++++||||||||.++..++++. +..+++++.|++.+|.|+++.+.. ..+.
T Consensus 23 ~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~ 102 (434)
T PRK11192 23 RPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAKHTHL 102 (434)
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHHccCCc
Confidence 3578999999999999999999999999998776665542 124789999999999998776544 3333
Q ss_pred ccCcccceec--cccccccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhccCCeEE
Q 001729 95 ELGGEVGYHI--GHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRV 172 (1020)
Q Consensus 95 ~lg~~Vgy~i--~~~~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lki 172 (1020)
.++..+|... ........+.+|+|+|||+|++.+....+.+.++++||||||| +.++..+...+.......+...++
T Consensus 103 ~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah-~~l~~~~~~~~~~i~~~~~~~~q~ 181 (434)
T PRK11192 103 DIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEAD-RMLDMGFAQDIETIAAETRWRKQT 181 (434)
T ss_pred EEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHH-HHhCCCcHHHHHHHHHhCccccEE
Confidence 3332222110 1122234578999999999999988777767799999999999 677766655544444445566799
Q ss_pred EEeecccchhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCcccccc
Q 001729 173 VLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAE 252 (1020)
Q Consensus 173 IlmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1020)
++||||++.+.+.++...+.. .++.+...+....... + ...+ ....
T Consensus 182 ~~~SAT~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~--i-----------------------~~~~--------~~~~ 227 (434)
T PRK11192 182 LLFSATLEGDAVQDFAERLLN-DPVEVEAEPSRRERKK--I-----------------------HQWY--------YRAD 227 (434)
T ss_pred EEEEeecCHHHHHHHHHHHcc-CCEEEEecCCcccccC--c-----------------------eEEE--------EEeC
Confidence 999999976555555443321 2222221111100000 0 0000 0000
Q ss_pred cChhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc-eEE
Q 001729 253 IKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVI 331 (1020)
Q Consensus 253 ~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVL 331 (1020)
......+++ ..+..... .+++||||+++++++.+++.|.. .++.+..+||+|+..+|..+++.|++|. +||
T Consensus 228 ~~~~k~~~l----~~l~~~~~--~~~~lVF~~s~~~~~~l~~~L~~--~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vL 299 (434)
T PRK11192 228 DLEHKTALL----CHLLKQPE--VTRSIVFVRTRERVHELAGWLRK--AGINCCYLEGEMVQAKRNEAIKRLTDGRVNVL 299 (434)
T ss_pred CHHHHHHHH----HHHHhcCC--CCeEEEEeCChHHHHHHHHHHHh--CCCCEEEecCCCCHHHHHHHHHHHhCCCCcEE
Confidence 001122222 23322222 36899999999999999999984 4578999999999999999999999999 999
Q ss_pred EEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc-cCCeeEEeechhhcc
Q 001729 332 LATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (1020)
Q Consensus 332 VATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c~rLys~~~~~ 404 (1020)
|||+++++|||+|+|++||+ ||.+. |...|+||+||+||. ..|.++.+++..++.
T Consensus 300 VaTd~~~~GiDip~v~~VI~--------~d~p~----------s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~ 355 (434)
T PRK11192 300 VATDVAARGIDIDDVSHVIN--------FDMPR----------SADTYLHRIGRTGRAGRKGTAISLVEAHDHL 355 (434)
T ss_pred EEccccccCccCCCCCEEEE--------ECCCC----------CHHHHhhcccccccCCCCceEEEEecHHHHH
Confidence 99999999999999999999 88877 445569999999998 689999999876654
No 22
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=3e-34 Score=339.38 Aligned_cols=312 Identities=19% Similarity=0.225 Sum_probs=217.6
Q ss_pred chhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcCC-----------ccccccCCceehhhhHHHHHhhccc--
Q 001729 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM-----------EPILCTQPRRFAVVAVAKMVAKGRN-- 93 (1020)
Q Consensus 27 Pi~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~~-----------~~IivtqPrrlaa~sva~rva~e~~-- 93 (1020)
-.+++|.++++.+++++++|+++|||||||..+..++++... .+++++.|++.+|.|+.+.+.....
T Consensus 23 ~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~~~ 102 (456)
T PRK10590 23 EPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYL 102 (456)
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHHhccC
Confidence 357899999999999999999999999999877777664321 1588999999999999887765322
Q ss_pred -cccCcccc-eecc-ccccccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhccCCe
Q 001729 94 -CELGGEVG-YHIG-HSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDL 170 (1020)
Q Consensus 94 -~~lg~~Vg-y~i~-~~~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~l 170 (1020)
......+| .... .........+|+|+||++|+..+....+.+.++++||||||| +.++.++...+.+.+.......
T Consensus 103 ~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah-~ll~~~~~~~i~~il~~l~~~~ 181 (456)
T PRK10590 103 NIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEAD-RMLDMGFIHDIRRVLAKLPAKR 181 (456)
T ss_pred CCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHH-HHhccccHHHHHHHHHhCCccC
Confidence 11111111 1100 111234568999999999999887776667799999999999 6777666555544444455677
Q ss_pred EEEEeecccchh--hhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCcc
Q 001729 171 RVVLMSATADIT--KYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSM 248 (1020)
Q Consensus 171 kiIlmSATld~~--~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 248 (1020)
+++++|||++.+ .+...+. .....+.+........ .....+. .
T Consensus 182 q~l~~SAT~~~~~~~l~~~~~--~~~~~i~~~~~~~~~~---------------------------~i~~~~~------~ 226 (456)
T PRK10590 182 QNLLFSATFSDDIKALAEKLL--HNPLEIEVARRNTASE---------------------------QVTQHVH------F 226 (456)
T ss_pred eEEEEeCCCcHHHHHHHHHHc--CCCeEEEEeccccccc---------------------------ceeEEEE------E
Confidence 999999998643 2322221 1111111110000000 0000000 0
Q ss_pred cccccChhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc
Q 001729 249 ANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR 328 (1020)
Q Consensus 249 ~~~~~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr 328 (1020)
.+ .....+++.. +..... ..++||||+++.+++.+++.|.. .++.+..+||+|++++|..+++.|++|+
T Consensus 227 ~~---~~~k~~~l~~----l~~~~~--~~~~lVF~~t~~~~~~l~~~L~~--~g~~~~~lhg~~~~~~R~~~l~~F~~g~ 295 (456)
T PRK10590 227 VD---KKRKRELLSQ----MIGKGN--WQQVLVFTRTKHGANHLAEQLNK--DGIRSAAIHGNKSQGARTRALADFKSGD 295 (456)
T ss_pred cC---HHHHHHHHHH----HHHcCC--CCcEEEEcCcHHHHHHHHHHHHH--CCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 00 0011122222 222221 35899999999999999999974 4578899999999999999999999998
Q ss_pred -eEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc-cCCeeEEeechhhc
Q 001729 329 -KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFF 403 (1020)
Q Consensus 329 -kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c~rLys~~~~ 403 (1020)
+|||||+++++|||||+|++||+ ||.|... .+|+||+|||||. ..|.++.+++.++.
T Consensus 296 ~~iLVaTdv~~rGiDip~v~~VI~--------~~~P~~~----------~~yvqR~GRaGR~g~~G~ai~l~~~~d~ 354 (456)
T PRK10590 296 IRVLVATDIAARGLDIEELPHVVN--------YELPNVP----------EDYVHRIGRTGRAAATGEALSLVCVDEH 354 (456)
T ss_pred CcEEEEccHHhcCCCcccCCEEEE--------eCCCCCH----------HHhhhhccccccCCCCeeEEEEecHHHH
Confidence 99999999999999999999999 9988744 4559999999998 68999999987654
No 23
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1.6e-34 Score=359.14 Aligned_cols=416 Identities=16% Similarity=0.132 Sum_probs=260.6
Q ss_pred hhhhHHHHHHH-HhhccEEEEecCCCCCCcCChhhhhhhc---CCccccccCCceehhhhHHHHHhhccccccCccccee
Q 001729 28 VMSLREKIVEK-VLENRVTLIVGETGCGKSSQVPQFLLAE---NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYH 103 (1020)
Q Consensus 28 i~~~Q~eil~~-i~~~~~vII~apTGSGKTt~ip~~lle~---~~~~IivtqPrrlaa~sva~rva~e~~~~lg~~Vgy~ 103 (1020)
++++|.++++. +.+++++++++|||||||..+..+++.. ...+++++.|++.++.+.++++... . .+|..|+..
T Consensus 24 l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~q~~~~~~~~-~-~~g~~v~~~ 101 (720)
T PRK00254 24 LYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAEEKYREFKDW-E-KLGLRVAMT 101 (720)
T ss_pred CCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHHHHHHH-h-hcCCEEEEE
Confidence 67899999986 7899999999999999998776666543 2347888899999999999887652 1 234444333
Q ss_pred cccc---ccccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhccCCeEEEEeeccc-
Q 001729 104 IGHS---KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATA- 179 (1020)
Q Consensus 104 i~~~---~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmSATl- 179 (1020)
.+.. .....+++|+|+||+++...+......+.++++|||||+|. ..+.+....+-..+.....+.|+|+||||+
T Consensus 102 ~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~-l~~~~rg~~le~il~~l~~~~qiI~lSATl~ 180 (720)
T PRK00254 102 TGDYDSTDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHL-IGSYDRGATLEMILTHMLGRAQILGLSATVG 180 (720)
T ss_pred eCCCCCchhhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCc-cCCccchHHHHHHHHhcCcCCcEEEEEccCC
Confidence 2221 11234689999999999887765544456999999999993 333222222222222334578999999998
Q ss_pred chhhhhHHHhhcCCcceEEEEEecCCCchhhHHHh--hhHHHHHHHHhcCCccccccccccccCCCCCCcccccccChhH
Q 001729 180 DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRR--VSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEV 257 (1020)
Q Consensus 180 d~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~--v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (1020)
|++.+.+|++.. ...... +..+.. +.+ .. ..+... . .........
T Consensus 181 n~~~la~wl~~~-------~~~~~~----rpv~l~~~~~~--------------~~----~~~~~~--~--~~~~~~~~~ 227 (720)
T PRK00254 181 NAEELAEWLNAE-------LVVSDW----RPVKLRKGVFY--------------QG----FLFWED--G--KIERFPNSW 227 (720)
T ss_pred CHHHHHHHhCCc-------cccCCC----CCCcceeeEec--------------CC----eeeccC--c--chhcchHHH
Confidence 788999998631 000000 000000 000 00 000000 0 000000112
Q ss_pred HHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhcccc-------------------------------ccceEEE
Q 001729 258 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL-------------------------------SSFFKVH 306 (1020)
Q Consensus 258 ~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~-------------------------------~~~~~v~ 306 (1020)
...+.+++ .. ++++||||++++.++.++..|... .....|.
T Consensus 228 ~~~~~~~i----~~----~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~ 299 (720)
T PRK00254 228 ESLVYDAV----KK----GKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVA 299 (720)
T ss_pred HHHHHHHH----Hh----CCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEE
Confidence 22222222 11 368999999999988776555210 0123589
Q ss_pred EeecccchHHHHHHHHhhhccc-eEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCC
Q 001729 307 ILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGR 385 (1020)
Q Consensus 307 ~lHs~l~~~er~~i~~~f~~gr-kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GR 385 (1020)
++||+|++++|..+++.|++|. +|||||+++++|||+|++++||... .+|+ ..+ ..+++.+++.||+||
T Consensus 300 ~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~----~~~~-~~~-----~~~~~~~~~~Qm~GR 369 (720)
T PRK00254 300 FHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDT----KRYS-NFG-----WEDIPVLEIQQMMGR 369 (720)
T ss_pred EeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCc----eEcC-CCC-----ceeCCHHHHHHhhhc
Confidence 9999999999999999999999 9999999999999999999999532 2243 112 234467899999999
Q ss_pred CCcc---cCCeeEEeechhh----cccccccCCccee------hhhHhHHHHHhhccC-ccccCChhHHH---hhhcCCC
Q 001729 386 TGRT---CDGQVYRLVTKSF----FGTLEDHECPAIL------RLSLRLQVLLICCAE-SKAISDPKVLL---QKALDPP 448 (1020)
Q Consensus 386 AGR~---~~G~c~rLys~~~----~~~l~~~~~PEI~------r~~L~~~vL~l~~~~-~~~l~~~~~~l---~~~ldpP 448 (1020)
|||. ..|.++.+.+.+. ++.+. ...||-+ .+.|...++.....+ .....+...++ +-+...|
T Consensus 370 AGR~~~d~~G~~ii~~~~~~~~~~~~~~~-~~~pe~l~s~l~~es~l~~~ll~~i~~~~~~~~~~~~~~l~~Tf~~~~~~ 448 (720)
T PRK00254 370 AGRPKYDEVGEAIIVATTEEPSKLMERYI-FGKPEKLFSMLSNESAFRSQVLALITNFGVSNFKELVNFLERTFYAHQRK 448 (720)
T ss_pred cCCCCcCCCceEEEEecCcchHHHHHHHH-hCCchhhhccCCchHHHHHHHHHHHHhCCCCCHHHHHHHHHhCHHHHhhc
Confidence 9997 4699998886432 22221 1112211 122333333332211 11111111222 1222234
Q ss_pred Cc----cchhhHHHHHHHHhhhhhcCCCCccCccccchhccccccccceeEEEEE
Q 001729 449 YP----EVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLK 499 (1020)
Q Consensus 449 ~~----~~i~~al~~L~~lgald~~~~~g~~~lT~lG~~~a~lpldp~~a~~ll~ 499 (1020)
+. +.+..+++.|.+.|.|+. +.++.+.+|++|++++.++|+|..++.+..
T Consensus 449 ~~~~~~~~v~~~l~~L~~~~~i~~-~~~~~~~~t~lG~~~s~~~i~~~t~~~~~~ 502 (720)
T PRK00254 449 DLYSLEEKAKEIVYFLLENEFIDI-DLEDRFIPLPLGIRTSQLYIDPLTAKKFKD 502 (720)
T ss_pred ChHhHHHHHHHHHHHHHHCCCeEE-cCCCCEeeChHHHHHHHHhCCHHHHHHHHH
Confidence 42 457788899999999976 333567899999999999999998876543
No 24
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.3e-34 Score=341.39 Aligned_cols=314 Identities=26% Similarity=0.305 Sum_probs=231.1
Q ss_pred hhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcCC--c----c-ccccCCceehhhhHHHHHhhccccccCccc
Q 001729 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM--E----P-ILCTQPRRFAVVAVAKMVAKGRNCELGGEV 100 (1020)
Q Consensus 28 i~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~~--~----~-IivtqPrrlaa~sva~rva~e~~~~lg~~V 100 (1020)
.+++|.++++.++.++++++.|+||||||.++..++++... . . .+++.|||.+|.|+++.+........+..+
T Consensus 52 pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~ 131 (513)
T COG0513 52 PTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNLGGLRV 131 (513)
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhcCCccE
Confidence 57899999999999999999999999999888888877533 1 2 788999999999998766543221101112
Q ss_pred ceeccc------cccccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhccCCeEEEE
Q 001729 101 GYHIGH------SKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVL 174 (1020)
Q Consensus 101 gy~i~~------~~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIl 174 (1020)
...++. ......+.+|+|+|||+|++++....+.+.++.++|+|||+ |+++.+|...+.+.+....++.|+++
T Consensus 132 ~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEAD-rmLd~Gf~~~i~~I~~~~p~~~qtll 210 (513)
T COG0513 132 AVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEAD-RMLDMGFIDDIEKILKALPPDRQTLL 210 (513)
T ss_pred EEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHh-hhhcCCCHHHHHHHHHhCCcccEEEE
Confidence 222221 12233469999999999999999887788899999999999 89999998888888777777999999
Q ss_pred eecccchhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCcccccccC
Q 001729 175 MSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIK 254 (1020)
Q Consensus 175 mSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (1020)
+|||++. .+..+....-. .++.+ .+...... .........|.. ....
T Consensus 211 fSAT~~~-~i~~l~~~~l~-~p~~i-~v~~~~~~----------------------~~~~~i~q~~~~--------v~~~ 257 (513)
T COG0513 211 FSATMPD-DIRELARRYLN-DPVEI-EVSVEKLE----------------------RTLKKIKQFYLE--------VESE 257 (513)
T ss_pred EecCCCH-HHHHHHHHHcc-CCcEE-EEcccccc----------------------ccccCceEEEEE--------eCCH
Confidence 9999976 45555443221 22211 11100000 000000000000 0000
Q ss_pred hhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc-eEEEE
Q 001729 255 PEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILA 333 (1020)
Q Consensus 255 ~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVLVA 333 (1020)
.....+ +..+..... .+++|||++++..++.++..|.. .++.+..+||+|++++|.++++.|++|+ +||||
T Consensus 258 ~~k~~~----L~~ll~~~~--~~~~IVF~~tk~~~~~l~~~l~~--~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVa 329 (513)
T COG0513 258 EEKLEL----LLKLLKDED--EGRVIVFVRTKRLVEELAESLRK--RGFKVAALHGDLPQEERDRALEKFKDGELRVLVA 329 (513)
T ss_pred HHHHHH----HHHHHhcCC--CCeEEEEeCcHHHHHHHHHHHHH--CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEE
Confidence 012222 333333222 24799999999999999999984 4589999999999999999999999999 99999
Q ss_pred eccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc-cCCeeEEeechh
Q 001729 334 TNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKS 401 (1020)
Q Consensus 334 Tniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c~rLys~~ 401 (1020)
||+|++|||||+|.+||+ ||.|...+.| +||+||+||. ..|.++.++++.
T Consensus 330 TDvaaRGiDi~~v~~Vin--------yD~p~~~e~y----------vHRiGRTgRaG~~G~ai~fv~~~ 380 (513)
T COG0513 330 TDVAARGLDIPDVSHVIN--------YDLPLDPEDY----------VHRIGRTGRAGRKGVAISFVTEE 380 (513)
T ss_pred echhhccCCccccceeEE--------ccCCCCHHHh----------eeccCccccCCCCCeEEEEeCcH
Confidence 999999999999999999 9999877766 9999999999 789999999864
No 25
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=6.6e-34 Score=340.73 Aligned_cols=312 Identities=17% Similarity=0.236 Sum_probs=215.3
Q ss_pred hhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhc------------CCccccccCCceehhhhHHHHHhhccccc
Q 001729 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE------------NMEPILCTQPRRFAVVAVAKMVAKGRNCE 95 (1020)
Q Consensus 28 i~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~------------~~~~IivtqPrrlaa~sva~rva~e~~~~ 95 (1020)
.+++|.++++.+++++++|+++|||||||.++..+++.. ....++++.|+|.+|.|+.+.+... +..
T Consensus 144 ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l-~~~ 222 (518)
T PLN00206 144 PTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVL-GKG 222 (518)
T ss_pred CCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHH-hCC
Confidence 578999999999999999999999999998777766542 1236888899999999887665442 212
Q ss_pred cCcccceecccc------ccccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhccCC
Q 001729 96 LGGEVGYHIGHS------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKND 169 (1020)
Q Consensus 96 lg~~Vgy~i~~~------~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~ 169 (1020)
++..+...++.+ .....+.+|+|+|||+|++.+....+.+.++++||||||| +.++.+|...+. .++...++
T Consensus 223 ~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad-~ml~~gf~~~i~-~i~~~l~~ 300 (518)
T PLN00206 223 LPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVD-CMLERGFRDQVM-QIFQALSQ 300 (518)
T ss_pred CCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHH-HHhhcchHHHHH-HHHHhCCC
Confidence 221111111111 1234568999999999999988776677799999999999 666666554433 33344467
Q ss_pred eEEEEeecccch--hhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCc
Q 001729 170 LRVVLMSATADI--TKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPS 247 (1020)
Q Consensus 170 lkiIlmSATld~--~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 247 (1020)
.|++++|||++. +.+...+.. .++ .+.+....... ..+ . .. ..+
T Consensus 301 ~q~l~~SATl~~~v~~l~~~~~~----~~~-~i~~~~~~~~~-~~v------------------~-q~--~~~------- 346 (518)
T PLN00206 301 PQVLLFSATVSPEVEKFASSLAK----DII-LISIGNPNRPN-KAV------------------K-QL--AIW------- 346 (518)
T ss_pred CcEEEEEeeCCHHHHHHHHHhCC----CCE-EEEeCCCCCCC-cce------------------e-EE--EEe-------
Confidence 899999999853 344444421 111 11111100000 000 0 00 000
Q ss_pred ccccccChhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhcc
Q 001729 248 MANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSH 327 (1020)
Q Consensus 248 ~~~~~~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~g 327 (1020)
.. .......+.+++.... ...+++|||++++..++.+++.|... .++.+..+||+++.++|..+++.|+.|
T Consensus 347 -~~---~~~k~~~l~~~l~~~~----~~~~~~iVFv~s~~~a~~l~~~L~~~-~g~~~~~~Hg~~~~~eR~~il~~Fr~G 417 (518)
T PLN00206 347 -VE---TKQKKQKLFDILKSKQ----HFKPPAVVFVSSRLGADLLANAITVV-TGLKALSIHGEKSMKERREVMKSFLVG 417 (518)
T ss_pred -cc---chhHHHHHHHHHHhhc----ccCCCEEEEcCCchhHHHHHHHHhhc-cCcceEEeeCCCCHHHHHHHHHHHHCC
Confidence 00 0001111222222111 11358999999999999999988632 357889999999999999999999999
Q ss_pred c-eEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc-cCCeeEEeechhhc
Q 001729 328 R-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFF 403 (1020)
Q Consensus 328 r-kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c~rLys~~~~ 403 (1020)
+ +|||||+++++|||+|+|++||+ ||.|. |..+|+||+|||||. ..|.++.++++++.
T Consensus 418 ~~~ILVaTdvl~rGiDip~v~~VI~--------~d~P~----------s~~~yihRiGRaGR~g~~G~ai~f~~~~~~ 477 (518)
T PLN00206 418 EVPVIVATGVLGRGVDLLRVRQVII--------FDMPN----------TIKEYIHQIGRASRMGEKGTAIVFVNEEDR 477 (518)
T ss_pred CCCEEEEecHhhccCCcccCCEEEE--------eCCCC----------CHHHHHHhccccccCCCCeEEEEEEchhHH
Confidence 9 99999999999999999999999 99887 445669999999999 57999999987653
No 26
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=6.8e-34 Score=344.89 Aligned_cols=311 Identities=20% Similarity=0.257 Sum_probs=220.7
Q ss_pred chhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcC-----CccccccCCceehhhhHHHHHhhccccccCcccc
Q 001729 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN-----MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (1020)
Q Consensus 27 Pi~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~-----~~~IivtqPrrlaa~sva~rva~e~~~~lg~~Vg 101 (1020)
.++++|.++++.+++++++|++||||||||.++.+++++.. ..+++|+.|++.+|.|+++.+....+...+..+.
T Consensus 28 ~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~ 107 (629)
T PRK11634 28 KPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVV 107 (629)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEE
Confidence 46789999999999999999999999999988877776532 2368899999999999988876643322222222
Q ss_pred eecccc------ccccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhccCCeEEEEe
Q 001729 102 YHIGHS------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLM 175 (1020)
Q Consensus 102 y~i~~~------~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlm 175 (1020)
...+.. ......++|+|+||+.|++.+....+.+.++++|||||||+ .++..+...+...+.......++++|
T Consensus 108 ~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~-ml~~gf~~di~~Il~~lp~~~q~llf 186 (629)
T PRK11634 108 ALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADE-MLRMGFIEDVETIMAQIPEGHQTALF 186 (629)
T ss_pred EEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHH-HhhcccHHHHHHHHHhCCCCCeEEEE
Confidence 211111 12345689999999999999887777777999999999995 55666665555555555667899999
Q ss_pred ecccchhh--hh-HHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCcccccc
Q 001729 176 SATADITK--YR-DYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAE 252 (1020)
Q Consensus 176 SATld~~~--~~-~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1020)
|||++... +. .|+.. +..+ .+...... .......|...
T Consensus 187 SAT~p~~i~~i~~~~l~~-----~~~i-~i~~~~~~------------------------~~~i~q~~~~v--------- 227 (629)
T PRK11634 187 SATMPEAIRRITRRFMKE-----PQEV-RIQSSVTT------------------------RPDISQSYWTV--------- 227 (629)
T ss_pred EccCChhHHHHHHHHcCC-----CeEE-EccCcccc------------------------CCceEEEEEEe---------
Confidence 99985432 22 22211 1111 11110000 00000000000
Q ss_pred cChhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc-eEE
Q 001729 253 IKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVI 331 (1020)
Q Consensus 253 ~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVL 331 (1020)
......+.+..++ .. .. ...+||||+++.+++.+++.|.. .++.+..+||+|++.+|..+++.|+.++ +||
T Consensus 228 ~~~~k~~~L~~~L---~~-~~--~~~~IVF~~tk~~a~~l~~~L~~--~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~IL 299 (629)
T PRK11634 228 WGMRKNEALVRFL---EA-ED--FDAAIIFVRTKNATLEVAEALER--NGYNSAALNGDMNQALREQTLERLKDGRLDIL 299 (629)
T ss_pred chhhHHHHHHHHH---Hh-cC--CCCEEEEeccHHHHHHHHHHHHh--CCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEE
Confidence 0001112222222 11 11 25899999999999999999984 4588999999999999999999999999 999
Q ss_pred EEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc-cCCeeEEeechhhc
Q 001729 332 LATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFF 403 (1020)
Q Consensus 332 VATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c~rLys~~~~ 403 (1020)
|||+++++|||+|+|++||+ ||.|.+. .+|+||+|||||. +.|.++.++++.+.
T Consensus 300 VATdv~arGIDip~V~~VI~--------~d~P~~~----------e~yvqRiGRtGRaGr~G~ai~~v~~~e~ 354 (629)
T PRK11634 300 IATDVAARGLDVERISLVVN--------YDIPMDS----------ESYVHRIGRTGRAGRAGRALLFVENRER 354 (629)
T ss_pred EEcchHhcCCCcccCCEEEE--------eCCCCCH----------HHHHHHhccccCCCCcceEEEEechHHH
Confidence 99999999999999999999 9998755 4559999999999 57999999987543
No 27
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.4e-33 Score=340.25 Aligned_cols=312 Identities=17% Similarity=0.216 Sum_probs=214.3
Q ss_pred hhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcC------------CccccccCCceehhhhHHHHHhhccccc
Q 001729 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN------------MEPILCTQPRRFAVVAVAKMVAKGRNCE 95 (1020)
Q Consensus 28 i~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~------------~~~IivtqPrrlaa~sva~rva~e~~~~ 95 (1020)
.+++|.++|+.+++++++|+++|||||||..+..++++.. ..+++++.|++.++.|+++.+... +..
T Consensus 32 ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~l-~~~ 110 (572)
T PRK04537 32 CTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKF-GAD 110 (572)
T ss_pred CCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHHH-hcc
Confidence 5789999999999999999999999999988777766431 136899999999999998876442 223
Q ss_pred cCcccceecccc------ccccccceEEeeechhhhHHHHHh-ccccceeEEEEeecccccccccceeehhhhhHhhc--
Q 001729 96 LGGEVGYHIGHS------KHLSERSKIVFKTAGVLLDEMRDR-GLNALKYKVIILDEVHERSVESDLVLVCVKQLLLK-- 166 (1020)
Q Consensus 96 lg~~Vgy~i~~~------~~~~~~t~Iiv~Tpg~Ll~~l~~~-~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~-- 166 (1020)
.+..++..++.. .....+.+|+|+||++|++.+... .+.+..+++||||||| +.++.++...+...+...
T Consensus 111 ~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh-~lld~gf~~~i~~il~~lp~ 189 (572)
T PRK04537 111 LGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEAD-RMFDLGFIKDIRFLLRRMPE 189 (572)
T ss_pred CCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHH-HHhhcchHHHHHHHHHhccc
Confidence 333333332221 123446799999999999988754 3455689999999999 555555544332222222
Q ss_pred cCCeEEEEeecccchhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCC
Q 001729 167 KNDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSP 246 (1020)
Q Consensus 167 ~~~lkiIlmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 246 (1020)
+.+.++++||||++..........+... ..+....... ........+..
T Consensus 190 ~~~~q~ll~SATl~~~v~~l~~~~l~~p--~~i~v~~~~~-------------------------~~~~i~q~~~~---- 238 (572)
T PRK04537 190 RGTRQTLLFSATLSHRVLELAYEHMNEP--EKLVVETETI-------------------------TAARVRQRIYF---- 238 (572)
T ss_pred ccCceEEEEeCCccHHHHHHHHHHhcCC--cEEEeccccc-------------------------cccceeEEEEe----
Confidence 2367999999998654333222222111 1111100000 00000000000
Q ss_pred cccccccChhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhc
Q 001729 247 SMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKS 326 (1020)
Q Consensus 247 ~~~~~~~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~ 326 (1020)
.........+..++ . ... ..++||||+++..++.+++.|.. .++.+..+||+|+..+|..+++.|++
T Consensus 239 -----~~~~~k~~~L~~ll---~-~~~--~~k~LVF~nt~~~ae~l~~~L~~--~g~~v~~lhg~l~~~eR~~il~~Fr~ 305 (572)
T PRK04537 239 -----PADEEKQTLLLGLL---S-RSE--GARTMVFVNTKAFVERVARTLER--HGYRVGVLSGDVPQKKRESLLNRFQK 305 (572)
T ss_pred -----cCHHHHHHHHHHHH---h-ccc--CCcEEEEeCCHHHHHHHHHHHHH--cCCCEEEEeCCCCHHHHHHHHHHHHc
Confidence 00011111222222 1 111 36899999999999999999984 45789999999999999999999999
Q ss_pred cc-eEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc-cCCeeEEeechhhc
Q 001729 327 HR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFF 403 (1020)
Q Consensus 327 gr-kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c~rLys~~~~ 403 (1020)
++ +|||||+++++|||+|+|++||+ ||.+.. ..+|+||+||+||. ..|.|+.++++.+.
T Consensus 306 G~~~VLVaTdv~arGIDip~V~~VIn--------yd~P~s----------~~~yvqRiGRaGR~G~~G~ai~~~~~~~~ 366 (572)
T PRK04537 306 GQLEILVATDVAARGLHIDGVKYVYN--------YDLPFD----------AEDYVHRIGRTARLGEEGDAISFACERYA 366 (572)
T ss_pred CCCeEEEEehhhhcCCCccCCCEEEE--------cCCCCC----------HHHHhhhhcccccCCCCceEEEEecHHHH
Confidence 98 99999999999999999999999 998864 45569999999999 68999999987543
No 28
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=4.2e-33 Score=325.17 Aligned_cols=315 Identities=19% Similarity=0.223 Sum_probs=213.6
Q ss_pred hhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcC-----CccccccCCceehhhhHHHHHhhcc---ccccCcc
Q 001729 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN-----MEPILCTQPRRFAVVAVAKMVAKGR---NCELGGE 99 (1020)
Q Consensus 28 i~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~-----~~~IivtqPrrlaa~sva~rva~e~---~~~lg~~ 99 (1020)
.+++|.++++.+.++++++++||||||||.++..++++.. ..+++++.|++.++.|+.+.+.... +...+..
T Consensus 51 ~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~ 130 (401)
T PTZ00424 51 PSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLKVRCHAC 130 (401)
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEE
Confidence 5789999999999999999999999999987776665532 2368899999999998877654422 1111111
Q ss_pred cceecc--ccccccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhccCCeEEEEeec
Q 001729 100 VGYHIG--HSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSA 177 (1020)
Q Consensus 100 Vgy~i~--~~~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmSA 177 (1020)
+|.... .......+.+|+|+||+.|.+.+..+.+.+.++++||||||| +..+.++...+.+.+....++.++|++||
T Consensus 131 ~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah-~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 209 (401)
T PTZ00424 131 VGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEAD-EMLSRGFKGQIYDVFKKLPPDVQVALFSA 209 (401)
T ss_pred ECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHH-HHHhcchHHHHHHHHhhCCCCcEEEEEEe
Confidence 221110 111223457999999999999888776667799999999999 44444444334444444567899999999
Q ss_pred ccchhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCcccccccChhH
Q 001729 178 TADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEV 257 (1020)
Q Consensus 178 Tld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (1020)
|++.+... ....... .+..+. ++.... . .......+. ........
T Consensus 210 T~~~~~~~-~~~~~~~-~~~~~~-~~~~~~--~----------------------~~~~~~~~~--------~~~~~~~~ 254 (401)
T PTZ00424 210 TMPNEILE-LTTKFMR-DPKRIL-VKKDEL--T----------------------LEGIRQFYV--------AVEKEEWK 254 (401)
T ss_pred cCCHHHHH-HHHHHcC-CCEEEE-eCCCCc--c----------------------cCCceEEEE--------ecChHHHH
Confidence 98643221 1111000 111111 111000 0 000000000 00000001
Q ss_pred HHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc-eEEEEecc
Q 001729 258 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNI 336 (1020)
Q Consensus 258 ~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVLVATni 336 (1020)
.+.+..++ .... ..++||||+++++++.+++.|.. .++.+..+||+|+.++|..+++.|++|+ +|||||++
T Consensus 255 ~~~l~~~~----~~~~--~~~~ivF~~t~~~~~~l~~~l~~--~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~ 326 (401)
T PTZ00424 255 FDTLCDLY----ETLT--ITQAIIYCNTRRKVDYLTKKMHE--RDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDL 326 (401)
T ss_pred HHHHHHHH----HhcC--CCeEEEEecCcHHHHHHHHHHHH--CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEccc
Confidence 11122222 1111 25799999999999999999974 4578999999999999999999999998 99999999
Q ss_pred ccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc-cCCeeEEeechhhcc
Q 001729 337 AESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (1020)
Q Consensus 337 ae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c~rLys~~~~~ 404 (1020)
+++|||+|++++||+ ||.+. |..+|+||+|||||. ..|.|+.++++++..
T Consensus 327 l~~GiDip~v~~VI~--------~~~p~----------s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~ 377 (401)
T PTZ00424 327 LARGIDVQQVSLVIN--------YDLPA----------SPENYIHRIGRSGRFGRKGVAINFVTPDDIE 377 (401)
T ss_pred ccCCcCcccCCEEEE--------ECCCC----------CHHHEeecccccccCCCCceEEEEEcHHHHH
Confidence 999999999999999 88776 555669999999998 689999999987654
No 29
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=5.9e-33 Score=330.37 Aligned_cols=308 Identities=20% Similarity=0.242 Sum_probs=212.1
Q ss_pred hhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcC------------CccccccCCceehhhhHHHHHhhccccc
Q 001729 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN------------MEPILCTQPRRFAVVAVAKMVAKGRNCE 95 (1020)
Q Consensus 28 i~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~------------~~~IivtqPrrlaa~sva~rva~e~~~~ 95 (1020)
.+++|.++++.+.+++++|+++|||||||+.+...+++.. ..+++++.|++.+|.|+++.+..... .
T Consensus 110 ~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~l~~-~ 188 (475)
T PRK01297 110 CTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTK-Y 188 (475)
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHHhhc-c
Confidence 4689999999999999999999999999987777665431 23688899999999998887655321 1
Q ss_pred cCcccceeccc-------cccccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhc--
Q 001729 96 LGGEVGYHIGH-------SKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLK-- 166 (1020)
Q Consensus 96 lg~~Vgy~i~~-------~~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~-- 166 (1020)
.|..+.-.++. .......++|+|+||++|+..+......+.++++||||||| +.++.++... ++.++..
T Consensus 189 ~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah-~l~~~~~~~~-l~~i~~~~~ 266 (475)
T PRK01297 189 TGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEAD-RMLDMGFIPQ-VRQIIRQTP 266 (475)
T ss_pred CCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHH-HHHhcccHHH-HHHHHHhCC
Confidence 22222211111 11123468999999999998877666666799999999999 4555554333 2333332
Q ss_pred -cCCeEEEEeecccchh--hhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCC
Q 001729 167 -KNDLRVVLMSATADIT--KYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSG 243 (1020)
Q Consensus 167 -~~~lkiIlmSATld~~--~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~ 243 (1020)
..+.++|++|||++.+ .+.+.+. .. +..+ .+...... .......+
T Consensus 267 ~~~~~q~i~~SAT~~~~~~~~~~~~~--~~--~~~v-~~~~~~~~------------------------~~~~~~~~--- 314 (475)
T PRK01297 267 RKEERQTLLFSATFTDDVMNLAKQWT--TD--PAIV-EIEPENVA------------------------SDTVEQHV--- 314 (475)
T ss_pred CCCCceEEEEEeecCHHHHHHHHHhc--cC--CEEE-EeccCcCC------------------------CCcccEEE---
Confidence 2357999999998533 2222221 11 1111 11110000 00000000
Q ss_pred CCCcccccccChhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHh
Q 001729 244 PSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKI 323 (1020)
Q Consensus 244 ~~~~~~~~~~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~ 323 (1020)
......+...++.+++. ... .+++||||+++++++.+++.|.. .++.+..+||+++.++|..+++.
T Consensus 315 ------~~~~~~~k~~~l~~ll~----~~~--~~~~IVF~~s~~~~~~l~~~L~~--~~~~~~~~~g~~~~~~R~~~~~~ 380 (475)
T PRK01297 315 ------YAVAGSDKYKLLYNLVT----QNP--WERVMVFANRKDEVRRIEERLVK--DGINAAQLSGDVPQHKRIKTLEG 380 (475)
T ss_pred ------EEecchhHHHHHHHHHH----hcC--CCeEEEEeCCHHHHHHHHHHHHH--cCCCEEEEECCCCHHHHHHHHHH
Confidence 00001112233333332 121 35899999999999999999974 45788999999999999999999
Q ss_pred hhccc-eEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc-cCCeeEEeechh
Q 001729 324 CKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKS 401 (1020)
Q Consensus 324 f~~gr-kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c~rLys~~ 401 (1020)
|++|+ +|||||+++++|||||++++||+ ||.+. |.++|+||+|||||. ..|.++.+++++
T Consensus 381 Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~--------~~~P~----------s~~~y~Qr~GRaGR~g~~g~~i~~~~~~ 442 (475)
T PRK01297 381 FREGKIRVLVATDVAGRGIHIDGISHVIN--------FTLPE----------DPDDYVHRIGRTGRAGASGVSISFAGED 442 (475)
T ss_pred HhCCCCcEEEEccccccCCcccCCCEEEE--------eCCCC----------CHHHHHHhhCccCCCCCCceEEEEecHH
Confidence 99998 99999999999999999999999 88876 556779999999999 689999999876
Q ss_pred h
Q 001729 402 F 402 (1020)
Q Consensus 402 ~ 402 (1020)
+
T Consensus 443 d 443 (475)
T PRK01297 443 D 443 (475)
T ss_pred H
Confidence 4
No 30
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.98 E-value=3.2e-32 Score=301.78 Aligned_cols=317 Identities=20% Similarity=0.244 Sum_probs=234.6
Q ss_pred chhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcCC---------ccccccCCceehhhhHHHHHhhccccccC
Q 001729 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM---------EPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (1020)
Q Consensus 27 Pi~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~~---------~~IivtqPrrlaa~sva~rva~e~~~~lg 97 (1020)
-++++|+..+..++.++++++.|-||||||.++..+..+... -.++|+.|||.+|+|.+....+.+...-+
T Consensus 104 ~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~ 183 (543)
T KOG0342|consen 104 TMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLKYHES 183 (543)
T ss_pred chhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHhhCCC
Confidence 478899999999999999999999999999888877766432 15888899999999998776665544336
Q ss_pred cccceecccccc------ccccceEEeeechhhhHHHHHhc-cccceeEEEEeecccccccccceeehhhhhHhhccCCe
Q 001729 98 GEVGYHIGHSKH------LSERSKIVFKTAGVLLDEMRDRG-LNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDL 170 (1020)
Q Consensus 98 ~~Vgy~i~~~~~------~~~~t~Iiv~Tpg~Ll~~l~~~~-l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~l 170 (1020)
..||+.++..+. .....+|+|+|||+|++.+++.. +...+..++|+|||+ |.++..|-..+.+.+.......
T Consensus 184 ~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEAD-rlLd~GF~~di~~Ii~~lpk~r 262 (543)
T KOG0342|consen 184 ITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEAD-RLLDIGFEEDVEQIIKILPKQR 262 (543)
T ss_pred cceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecch-hhhhcccHHHHHHHHHhccccc
Confidence 667777765442 23489999999999999998653 333477899999999 9999999999888887777889
Q ss_pred EEEEeecccchhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCcccc
Q 001729 171 RVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMAN 250 (1020)
Q Consensus 171 kiIlmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1020)
|..++|||.+.+ +.+.....-..+++-+....+... .. .+-+.+.|...+.
T Consensus 263 qt~LFSAT~~~k-V~~l~~~~L~~d~~~v~~~d~~~~-~T----------------------he~l~Qgyvv~~~----- 313 (543)
T KOG0342|consen 263 QTLLFSATQPSK-VKDLARGALKRDPVFVNVDDGGER-ET----------------------HERLEQGYVVAPS----- 313 (543)
T ss_pred eeeEeeCCCcHH-HHHHHHHhhcCCceEeecCCCCCc-ch----------------------hhcccceEEeccc-----
Confidence 999999998744 444443322223333322222110 00 0011111111111
Q ss_pred cccChhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc-e
Q 001729 251 AEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-K 329 (1020)
Q Consensus 251 ~~~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-k 329 (1020)
... +.++..++.. +.. ..+|+||++|...+...++.|. ..++.|..+||+.++..|..++..|+... -
T Consensus 314 ---~~~-f~ll~~~LKk---~~~--~~KiiVF~sT~~~vk~~~~lL~--~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesg 382 (543)
T KOG0342|consen 314 ---DSR-FSLLYTFLKK---NIK--RYKIIVFFSTCMSVKFHAELLN--YIDLPVLEIHGKQKQNKRTSTFFEFCKAESG 382 (543)
T ss_pred ---cch-HHHHHHHHHH---hcC--CceEEEEechhhHHHHHHHHHh--hcCCchhhhhcCCcccccchHHHHHhhcccc
Confidence 111 1222222221 111 2689999999999999999998 44588999999999999999999998877 9
Q ss_pred EEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc-cCCeeEEeechhh
Q 001729 330 VILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSF 402 (1020)
Q Consensus 330 VLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c~rLys~~~ 402 (1020)
||||||++++|+|+|+|++||+ ||+|.+.+.| +||+||+||. +.|..+.+..+.+
T Consensus 383 IL~cTDVaARGlD~P~V~~VvQ--------~~~P~d~~~Y----------IHRvGRTaR~gk~G~alL~l~p~E 438 (543)
T KOG0342|consen 383 ILVCTDVAARGLDIPDVDWVVQ--------YDPPSDPEQY----------IHRVGRTAREGKEGKALLLLAPWE 438 (543)
T ss_pred eEEecchhhccCCCCCceEEEE--------eCCCCCHHHH----------HHHhccccccCCCceEEEEeChhH
Confidence 9999999999999999999999 9999966555 9999999998 6799999887754
No 31
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.98 E-value=3.4e-32 Score=302.00 Aligned_cols=307 Identities=24% Similarity=0.305 Sum_probs=226.1
Q ss_pred hhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcC--------------CccccccCCceehhhhHHHHH---hh
Q 001729 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN--------------MEPILCTQPRRFAVVAVAKMV---AK 90 (1020)
Q Consensus 28 i~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~--------------~~~IivtqPrrlaa~sva~rv---a~ 90 (1020)
.+++|..+++..++++++|.+++||||||.+++.+|+... ....++..|+|.+|+|+.+.- ..
T Consensus 268 ptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~ 347 (673)
T KOG0333|consen 268 PTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGK 347 (673)
T ss_pred CchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcc
Confidence 4678999999999999999999999999977766665321 125678899999999886543 33
Q ss_pred ccccccCcccceeccccc--cccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhcc-
Q 001729 91 GRNCELGGEVGYHIGHSK--HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKK- 167 (1020)
Q Consensus 91 e~~~~lg~~Vgy~i~~~~--~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~- 167 (1020)
-+|..+-..||..-..+. .++..+.|+++|||.|+..+.+..+-+.+..+||+|||+ |+++.+|-..+.+.+-...
T Consensus 348 ~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldead-rmiDmgfE~dv~~iL~~mPs 426 (673)
T KOG0333|consen 348 PLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEAD-RMIDMGFEPDVQKILEQMPS 426 (673)
T ss_pred cccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchh-hhhcccccHHHHHHHHhCCc
Confidence 344444344554422333 467899999999999999998877767799999999999 8999998888777664321
Q ss_pred ----------------------C--CeEEEEeecccch--hh-hhHHHhhcCCcceEEEEEecCC--CchhhHHHhhhHH
Q 001729 168 ----------------------N--DLRVVLMSATADI--TK-YRDYFRDLGRGERVEVLAIPST--NQRTIFQRRVSYL 218 (1020)
Q Consensus 168 ----------------------~--~lkiIlmSATld~--~~-~~~~f~~~~~~~~v~v~~~p~~--~~~~~~~v~v~yl 218 (1020)
. -.+.+.+|||+.+ +. ...||.. |+ ++++... +..+.-+ .+++
T Consensus 427 sn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~-----pv-~vtig~~gk~~~rveQ-~v~m- 498 (673)
T KOG0333|consen 427 SNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRR-----PV-VVTIGSAGKPTPRVEQ-KVEM- 498 (673)
T ss_pred cccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhC-----Ce-EEEeccCCCCccchhe-EEEE-
Confidence 0 1588999999853 33 3445543 22 2222211 1111100 0000
Q ss_pred HHHHHHhcCCccccccccccccCCCCCCcccccccChhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccc
Q 001729 219 EQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKP 298 (1020)
Q Consensus 219 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~ 298 (1020)
....+....+.+++. .. ...+|+||+|+++.++.+++.|.+
T Consensus 499 ---------------------------------~~ed~k~kkL~eil~---~~---~~ppiIIFvN~kk~~d~lAk~LeK 539 (673)
T KOG0333|consen 499 ---------------------------------VSEDEKRKKLIEILE---SN---FDPPIIIFVNTKKGADALAKILEK 539 (673)
T ss_pred ---------------------------------ecchHHHHHHHHHHH---hC---CCCCEEEEEechhhHHHHHHHHhh
Confidence 000111222222222 22 135899999999999999999985
Q ss_pred cccceEEEEeecccchHHHHHHHHhhhccc-eEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehh
Q 001729 299 LSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQS 377 (1020)
Q Consensus 299 ~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSka 377 (1020)
.++.+..|||+-+++||..++..|+.+. .|+||||+|++|||||+|.+||+ ||....++.|
T Consensus 540 --~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVin--------ydmaksieDY-------- 601 (673)
T KOG0333|consen 540 --AGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVIN--------YDMAKSIEDY-------- 601 (673)
T ss_pred --ccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeee--------cchhhhHHHH--------
Confidence 4599999999999999999999999988 99999999999999999999999 9999977766
Q ss_pred HHHHhcCCCCcc-cCCeeEEeechhh
Q 001729 378 QAEQRRGRTGRT-CDGQVYRLVTKSF 402 (1020)
Q Consensus 378 s~~QR~GRAGR~-~~G~c~rLys~~~ 402 (1020)
.||+||+||. ..|.++.++++++
T Consensus 602 --tHRIGRTgRAGk~GtaiSflt~~d 625 (673)
T KOG0333|consen 602 --THRIGRTGRAGKSGTAISFLTPAD 625 (673)
T ss_pred --HHHhccccccccCceeEEEeccch
Confidence 9999999999 6799999999876
No 32
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.98 E-value=3.7e-32 Score=298.96 Aligned_cols=332 Identities=20% Similarity=0.247 Sum_probs=228.3
Q ss_pred hhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcCC--------c--cccccCCceehhhhHHHHHhhccc----
Q 001729 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM--------E--PILCTQPRRFAVVAVAKMVAKGRN---- 93 (1020)
Q Consensus 28 i~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~~--------~--~IivtqPrrlaa~sva~rva~e~~---- 93 (1020)
.+++|...++.++++++|++.++||||||.++..++++... . ..+|+.|+|.+|.|+.+-+.....
T Consensus 29 mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~~~l~~ 108 (567)
T KOG0345|consen 29 MTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFLEHLPN 108 (567)
T ss_pred cCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHHHHhhhc
Confidence 67899999999999999999999999999999988887531 1 356667888888877654433221
Q ss_pred cccCccccee-cccc--ccccccceEEeeechhhhHHHHHh--ccccceeEEEEeecccccccccceeehhhhhHhhccC
Q 001729 94 CELGGEVGYH-IGHS--KHLSERSKIVFKTAGVLLDEMRDR--GLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKN 168 (1020)
Q Consensus 94 ~~lg~~Vgy~-i~~~--~~~~~~t~Iiv~Tpg~Ll~~l~~~--~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~ 168 (1020)
...--.||.. +..+ ....+++.|+|+|||+|++.++.. .+++..++++|+|||+ |.++.+|...+-..+-..+.
T Consensus 109 l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEAD-rLldmgFe~~~n~ILs~LPK 187 (567)
T KOG0345|consen 109 LNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEAD-RLLDMGFEASVNTILSFLPK 187 (567)
T ss_pred cceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchH-hHhcccHHHHHHHHHHhccc
Confidence 1111123322 1111 112457899999999999999864 3444589999999999 99999998887777766777
Q ss_pred CeEEEEeecccchhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCcc
Q 001729 169 DLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSM 248 (1020)
Q Consensus 169 ~lkiIlmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 248 (1020)
..+.=++|||...+ ..+... .|...++.|.--..... .-| ..+...|...
T Consensus 188 QRRTGLFSATq~~~-v~dL~r-aGLRNpv~V~V~~k~~~--~tP---------------------S~L~~~Y~v~----- 237 (567)
T KOG0345|consen 188 QRRTGLFSATQTQE-VEDLAR-AGLRNPVRVSVKEKSKS--ATP---------------------SSLALEYLVC----- 237 (567)
T ss_pred ccccccccchhhHH-HHHHHH-hhccCceeeeecccccc--cCc---------------------hhhcceeeEe-----
Confidence 88999999997532 223221 12223333321110000 000 0000111100
Q ss_pred cccccChhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc
Q 001729 249 ANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR 328 (1020)
Q Consensus 249 ~~~~~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr 328 (1020)
... .....+.+++ .... .+++|||.+|-..++.....+........+..+||.|.+.+|..++..|+...
T Consensus 238 ---~a~-eK~~~lv~~L---~~~~---~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~ 307 (567)
T KOG0345|consen 238 ---EAD-EKLSQLVHLL---NNNK---DKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLS 307 (567)
T ss_pred ---cHH-HHHHHHHHHH---hccc---cccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhcc
Confidence 000 1111122222 2211 36999999999999988888876666788999999999999999999998865
Q ss_pred -eEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc-cCCeeEEeech--hhcc
Q 001729 329 -KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTK--SFFG 404 (1020)
Q Consensus 329 -kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c~rLys~--~~~~ 404 (1020)
.|++|||+|++|||||+|++||+ ||+|...+++ .||+||+||. +.|.++.+..+ ++|-
T Consensus 308 ~~vl~~TDVaARGlDip~iD~VvQ--------~DpP~~~~~F----------vHR~GRTaR~gr~G~Aivfl~p~E~aYv 369 (567)
T KOG0345|consen 308 NGVLFCTDVAARGLDIPGIDLVVQ--------FDPPKDPSSF----------VHRCGRTARAGREGNAIVFLNPREEAYV 369 (567)
T ss_pred CceEEeehhhhccCCCCCceEEEe--------cCCCCChhHH----------HhhcchhhhccCccceEEEecccHHHHH
Confidence 99999999999999999999999 9999977665 9999999999 67888777654 3453
Q ss_pred -cccccCCcceehhh
Q 001729 405 -TLEDHECPAILRLS 418 (1020)
Q Consensus 405 -~l~~~~~PEI~r~~ 418 (1020)
-|.-...|++-+..
T Consensus 370 eFl~i~~~v~le~~~ 384 (567)
T KOG0345|consen 370 EFLRIKGKVELERID 384 (567)
T ss_pred HHHHhcCccchhhhc
Confidence 34555567665543
No 33
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=7.2e-32 Score=320.12 Aligned_cols=312 Identities=18% Similarity=0.153 Sum_probs=208.1
Q ss_pred hhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcCCccccccCCceehhhhHHHHHhhccccccCcccceeccc-
Q 001729 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGH- 106 (1020)
Q Consensus 28 i~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~~~~IivtqPrrlaa~sva~rva~e~~~~lg~~Vgy~i~~- 106 (1020)
.+++|.++++++++++++++++|||||||..+..+++... +..+|+.|++.++.+...++.. .+.......|.....
T Consensus 12 ~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~~-~~~lVi~P~~~L~~dq~~~l~~-~gi~~~~l~~~~~~~~ 89 (470)
T TIGR00614 12 FRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCSD-GITLVISPLISLMEDQVLQLKA-SGIPATFLNSSQSKEQ 89 (470)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHcC-CcEEEEecHHHHHHHHHHHHHH-cCCcEEEEeCCCCHHH
Confidence 4679999999999999999999999999976555555433 3566778888888877777653 232221111111000
Q ss_pred -----cccccccceEEeeechhhhHHH-HHhcc-ccceeEEEEeecccccccc-cceeehh--hhhHhhccCCeEEEEee
Q 001729 107 -----SKHLSERSKIVFKTAGVLLDEM-RDRGL-NALKYKVIILDEVHERSVE-SDLVLVC--VKQLLLKKNDLRVVLMS 176 (1020)
Q Consensus 107 -----~~~~~~~t~Iiv~Tpg~Ll~~l-~~~~l-~l~~~s~IIIDEaHER~l~-~d~ll~~--lk~ll~~~~~lkiIlmS 176 (1020)
........+|+|+||+.+.... ....+ ...++++|||||||..+-. .+|...+ +..+....++.+++++|
T Consensus 90 ~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lT 169 (470)
T TIGR00614 90 QKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFPNVPIMALT 169 (470)
T ss_pred HHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHcCCCceEEEe
Confidence 0112345799999999976432 11111 2348999999999953321 2333322 23344556789999999
Q ss_pred cccchhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCcccccccChh
Q 001729 177 ATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPE 256 (1020)
Q Consensus 177 ATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (1020)
||++.....+....++...+..+ ........ ..|.... ....
T Consensus 170 AT~~~~~~~di~~~l~l~~~~~~--~~s~~r~n----------------------------l~~~v~~--------~~~~ 211 (470)
T TIGR00614 170 ATASPSVREDILRQLNLKNPQIF--CTSFDRPN----------------------------LYYEVRR--------KTPK 211 (470)
T ss_pred cCCCHHHHHHHHHHcCCCCCcEE--eCCCCCCC----------------------------cEEEEEe--------CCcc
Confidence 99977655555544332221111 11100000 0000000 0001
Q ss_pred HHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc-eEEEEec
Q 001729 257 VHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATN 335 (1020)
Q Consensus 257 ~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVLVATn 335 (1020)
.+.+++..+....+ ++.+||||+++++++.+++.|.. .++.+..+||+|+.++|..+++.|+.++ +|||||+
T Consensus 212 ---~~~~l~~~l~~~~~--~~~~IIF~~s~~~~e~la~~L~~--~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~ 284 (470)
T TIGR00614 212 ---ILEDLLRFIRKEFK--GKSGIIYCPSRKKSEQVTASLQN--LGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATV 284 (470)
T ss_pred ---HHHHHHHHHHHhcC--CCceEEEECcHHHHHHHHHHHHh--cCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEec
Confidence 11122222221111 24669999999999999999984 4578999999999999999999999999 9999999
Q ss_pred cccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc-cCCeeEEeechhhcc
Q 001729 336 IAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (1020)
Q Consensus 336 iae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c~rLys~~~~~ 404 (1020)
++++|||+|+|++||+ ||+|. |..+|+||+|||||. .+|.|+.+|+..+..
T Consensus 285 ~~~~GID~p~V~~VI~--------~~~P~----------s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~ 336 (470)
T TIGR00614 285 AFGMGINKPDVRFVIH--------YSLPK----------SMESYYQESGRAGRDGLPSECHLFYAPADIN 336 (470)
T ss_pred hhhccCCcccceEEEE--------eCCCC----------CHHHHHhhhcCcCCCCCCceEEEEechhHHH
Confidence 9999999999999999 88887 445669999999999 689999999987653
No 34
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=2.2e-32 Score=302.27 Aligned_cols=317 Identities=23% Similarity=0.297 Sum_probs=232.6
Q ss_pred hhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcCC--------ccccccCCceehhhhHH---HHHhhcccccc
Q 001729 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM--------EPILCTQPRRFAVVAVA---KMVAKGRNCEL 96 (1020)
Q Consensus 28 i~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~~--------~~IivtqPrrlaa~sva---~rva~e~~~~l 96 (1020)
.+|+|...|+..+-+++++.+|.||||||.++..++++... .+|+|+.|+|.+|+|+. +.++++....+
T Consensus 204 PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~ 283 (691)
T KOG0338|consen 204 PTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQFTDITV 283 (691)
T ss_pred CCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhhcccee
Confidence 46889999999999999999999999999999999988643 37999999999988775 45666665555
Q ss_pred Ccccce-ecc-ccccccccceEEeeechhhhHHHHHh-ccccceeEEEEeecccccccccceeehhhhhHhhccCCeEEE
Q 001729 97 GGEVGY-HIG-HSKHLSERSKIVFKTAGVLLDEMRDR-GLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVV 173 (1020)
Q Consensus 97 g~~Vgy-~i~-~~~~~~~~t~Iiv~Tpg~Ll~~l~~~-~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiI 173 (1020)
|-.||. .++ ++..+...++|+|+|||+|.+.+.+. .+.+.++.++|+|||+ |+++..|...+-..+..-..+.|.+
T Consensus 284 ~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEAD-RMLeegFademnEii~lcpk~RQTm 362 (691)
T KOG0338|consen 284 GLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEAD-RMLEEGFADEMNEIIRLCPKNRQTM 362 (691)
T ss_pred eeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHH-HHHHHHHHHHHHHHHHhccccccce
Confidence 544442 222 23345678999999999999999854 5667799999999999 9999888777666555556778999
Q ss_pred EeecccchhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCccccccc
Q 001729 174 LMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEI 253 (1020)
Q Consensus 174 lmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (1020)
++|||+..+ +.+... +....|+.+..-|....... ..-.| ...+- . .+ ..
T Consensus 363 LFSATMtee-VkdL~s-lSL~kPvrifvd~~~~~a~~--LtQEF------------------iRIR~----~---re-~d 412 (691)
T KOG0338|consen 363 LFSATMTEE-VKDLAS-LSLNKPVRIFVDPNKDTAPK--LTQEF------------------IRIRP----K---RE-GD 412 (691)
T ss_pred eehhhhHHH-HHHHHH-hhcCCCeEEEeCCccccchh--hhHHH------------------heecc----c---cc-cc
Confidence 999999632 333322 22335566654443221110 00001 00000 0 00 00
Q ss_pred ChhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc-eEEE
Q 001729 254 KPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVIL 332 (1020)
Q Consensus 254 ~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVLV 332 (1020)
.+. .+..++.... ...++||+.+++.+..+.-.|. ..++.+.-+||+|+++||...++.|+... .|||
T Consensus 413 Rea---~l~~l~~rtf------~~~~ivFv~tKk~AHRl~IllG--Llgl~agElHGsLtQ~QRlesL~kFk~~eidvLi 481 (691)
T KOG0338|consen 413 REA---MLASLITRTF------QDRTIVFVRTKKQAHRLRILLG--LLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLI 481 (691)
T ss_pred cHH---HHHHHHHHhc------ccceEEEEehHHHHHHHHHHHH--HhhchhhhhcccccHHHHHHHHHHHHhccCCEEE
Confidence 111 1112222111 2589999999999999887776 34588999999999999999999999998 9999
Q ss_pred EeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc-cCCeeEEeechhhcc
Q 001729 333 ATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (1020)
Q Consensus 333 ATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c~rLys~~~~~ 404 (1020)
||++|++|+||++|..||| |+.|..++.| +||+||+.|. +.|..+.|..+++-.
T Consensus 482 aTDvAsRGLDI~gV~tVIN--------y~mP~t~e~Y----------~HRVGRTARAGRaGrsVtlvgE~dRk 536 (691)
T KOG0338|consen 482 ATDVASRGLDIEGVQTVIN--------YAMPKTIEHY----------LHRVGRTARAGRAGRSVTLVGESDRK 536 (691)
T ss_pred EechhhccCCccceeEEEe--------ccCchhHHHH----------HHHhhhhhhcccCcceEEEeccccHH
Confidence 9999999999999999999 9998855555 9999999999 789999999987543
No 35
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.97 E-value=4.4e-31 Score=321.63 Aligned_cols=311 Identities=18% Similarity=0.183 Sum_probs=210.9
Q ss_pred chhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcCCccccccCCceehhhhHHHHHhhccccccCcccceecc-
Q 001729 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIG- 105 (1020)
Q Consensus 27 Pi~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~~~~IivtqPrrlaa~sva~rva~e~~~~lg~~Vgy~i~- 105 (1020)
..+++|.++++++.+++++++++|||+|||..+..+++... +.++++.|++.++.+....+.. .|.......+....
T Consensus 25 ~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~~-g~tlVisPl~sL~~dqv~~l~~-~gi~~~~~~s~~~~~ 102 (607)
T PRK11057 25 QFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVLD-GLTLVVSPLISLMKDQVDQLLA-NGVAAACLNSTQTRE 102 (607)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHcC-CCEEEEecHHHHHHHHHHHHHH-cCCcEEEEcCCCCHH
Confidence 35689999999999999999999999999975555544433 3567778888888777776654 23222111110000
Q ss_pred -----ccccccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccc-cceeeh--hhhhHhhccCCeEEEEeec
Q 001729 106 -----HSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVE-SDLVLV--CVKQLLLKKNDLRVVLMSA 177 (1020)
Q Consensus 106 -----~~~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~-~d~ll~--~lk~ll~~~~~lkiIlmSA 177 (1020)
.........+|+|+||+.|........+...++++|||||||+.+-. .||... .+..+....++.+++++||
T Consensus 103 ~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~p~~~~v~lTA 182 (607)
T PRK11057 103 QQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTA 182 (607)
T ss_pred HHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhCCCCcEEEEec
Confidence 11122345789999999987542222233347899999999964422 234332 2344455567899999999
Q ss_pred ccchhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCcccccccChhH
Q 001729 178 TADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEV 257 (1020)
Q Consensus 178 Tld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (1020)
|++.....+....++...+.. ......... +. |... .. ...
T Consensus 183 T~~~~~~~di~~~l~l~~~~~--~~~~~~r~n-----l~-----------------------~~v~------~~--~~~- 223 (607)
T PRK11057 183 TADDTTRQDIVRLLGLNDPLI--QISSFDRPN-----IR-----------------------YTLV------EK--FKP- 223 (607)
T ss_pred CCChhHHHHHHHHhCCCCeEE--EECCCCCCc-----ce-----------------------eeee------ec--cch-
Confidence 997665555554433222221 111110000 00 0000 00 000
Q ss_pred HHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc-eEEEEecc
Q 001729 258 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNI 336 (1020)
Q Consensus 258 ~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVLVATni 336 (1020)
+..++..+.... ++++||||+++++++.+++.|.. .++.+..+||+|+.++|..+++.|+.++ +|||||++
T Consensus 224 ---~~~l~~~l~~~~---~~~~IIFc~tr~~~e~la~~L~~--~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a 295 (607)
T PRK11057 224 ---LDQLMRYVQEQR---GKSGIIYCNSRAKVEDTAARLQS--RGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVA 295 (607)
T ss_pred ---HHHHHHHHHhcC---CCCEEEEECcHHHHHHHHHHHHh--CCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEech
Confidence 112222222221 36899999999999999999984 4578999999999999999999999998 99999999
Q ss_pred ccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc-cCCeeEEeechhhcc
Q 001729 337 AESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (1020)
Q Consensus 337 ae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c~rLys~~~~~ 404 (1020)
+++|||+|+|++||+ ||.|. |..+|+||+|||||. .+|.|+.+|+..++.
T Consensus 296 ~~~GIDip~V~~VI~--------~d~P~----------s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~ 346 (607)
T PRK11057 296 FGMGINKPNVRFVVH--------FDIPR----------NIESYYQETGRAGRDGLPAEAMLFYDPADMA 346 (607)
T ss_pred hhccCCCCCcCEEEE--------eCCCC----------CHHHHHHHhhhccCCCCCceEEEEeCHHHHH
Confidence 999999999999999 99887 455669999999999 589999999987653
No 36
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=5.3e-31 Score=281.12 Aligned_cols=315 Identities=22% Similarity=0.262 Sum_probs=225.5
Q ss_pred hhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcCCc-----cccccCCceehhhhHHHHHhhccccccCcccce
Q 001729 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENME-----PILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (1020)
Q Consensus 28 i~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~~~-----~IivtqPrrlaa~sva~rva~e~~~~lg~~Vgy 102 (1020)
.+++|..++++|++|+++|-+|.||||||+++..++++.... -.++..|+|.+|.|+++++.. +|..++..+..
T Consensus 30 pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~a-lGk~l~lK~~v 108 (442)
T KOG0340|consen 30 PTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIA-LGKLLNLKVSV 108 (442)
T ss_pred CCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHH-hcccccceEEE
Confidence 467899999999999999999999999999999999876543 356777889999999998754 33333333333
Q ss_pred ecc------ccccccccceEEeeechhhhHHHHHh----ccccceeEEEEeecccccccccceeehhhhhHhhccCCeEE
Q 001729 103 HIG------HSKHLSERSKIVFKTAGVLLDEMRDR----GLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRV 172 (1020)
Q Consensus 103 ~i~------~~~~~~~~t~Iiv~Tpg~Ll~~l~~~----~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lki 172 (1020)
.++ ....+..+++++++|||.|...+.+. ...+.++..+|+|||+ |.++.+|-..+--.........+.
T Consensus 109 ivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEAD-rvL~~~f~d~L~~i~e~lP~~RQt 187 (442)
T KOG0340|consen 109 IVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEAD-RVLAGCFPDILEGIEECLPKPRQT 187 (442)
T ss_pred EEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchh-hhhccchhhHHhhhhccCCCccce
Confidence 333 33445788999999999999888754 1223489999999999 898887765544333344555699
Q ss_pred EEeecccchhhhhHHHhhcCCc-ceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCccccc
Q 001729 173 VLMSATADITKYRDYFRDLGRG-ERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANA 251 (1020)
Q Consensus 173 IlmSATld~~~~~~~f~~~~~~-~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1020)
+++|||++ +.+...++..... ...++..+++.... +.+...|...+
T Consensus 188 LlfSATit-d~i~ql~~~~i~k~~a~~~e~~~~vstv-------------------------etL~q~yI~~~------- 234 (442)
T KOG0340|consen 188 LLFSATIT-DTIKQLFGCPITKSIAFELEVIDGVSTV-------------------------ETLYQGYILVS------- 234 (442)
T ss_pred EEEEeehh-hHHHHhhcCCcccccceEEeccCCCCch-------------------------hhhhhheeecc-------
Confidence 99999986 3344454432111 11111112221100 00111111110
Q ss_pred ccChhHHH-HHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc-e
Q 001729 252 EIKPEVHK-LIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-K 329 (1020)
Q Consensus 252 ~~~~~~~~-li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-k 329 (1020)
..+.+ .+.+++...... ..+.++||+++..+++.++..|+. -++.+..+||.|++.+|...+..|+++. +
T Consensus 235 ---~~vkdaYLv~~Lr~~~~~---~~~simIFvnttr~cQ~l~~~l~~--le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~ 306 (442)
T KOG0340|consen 235 ---IDVKDAYLVHLLRDFENK---ENGSIMIFVNTTRECQLLSMTLKN--LEVRVVSLHSQMPQKERLAALSRFRSNAAR 306 (442)
T ss_pred ---hhhhHHHHHHHHhhhhhc---cCceEEEEeehhHHHHHHHHHHhh--hceeeeehhhcchHHHHHHHHHHHhhcCcc
Confidence 00001 111223222221 257999999999999999999984 4589999999999999999999999998 9
Q ss_pred EEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc-cCCeeEEeechhhc
Q 001729 330 VILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFF 403 (1020)
Q Consensus 330 VLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c~rLys~~~~ 403 (1020)
||||||+|.+|+|||.|..||| ||.|+....| +||.||+.|. +.|..+.++++.+.
T Consensus 307 iliaTDVAsRGLDIP~V~LVvN--------~diPr~P~~y----------iHRvGRtARAGR~G~aiSivt~rDv 363 (442)
T KOG0340|consen 307 ILIATDVASRGLDIPTVELVVN--------HDIPRDPKDY----------IHRVGRTARAGRKGMAISIVTQRDV 363 (442)
T ss_pred EEEEechhhcCCCCCceeEEEe--------cCCCCCHHHH----------HHhhcchhcccCCcceEEEechhhH
Confidence 9999999999999999999999 9999977776 9999999999 67999999986544
No 37
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=8.4e-31 Score=271.42 Aligned_cols=313 Identities=19% Similarity=0.260 Sum_probs=227.6
Q ss_pred hhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcCC-----ccccccCCceehhhhHHHHHhhccccccCcccce
Q 001729 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM-----EPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (1020)
Q Consensus 28 i~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~~-----~~IivtqPrrlaa~sva~rva~e~~~~lg~~Vgy 102 (1020)
.+.+|+.++..|.++++||+.+..|+|||..+..-++.... ..++|+.|+|.+|.|+.+-+.. +|...+..+--
T Consensus 50 PS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~a-lg~~mnvq~ha 128 (400)
T KOG0328|consen 50 PSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVILA-LGDYMNVQCHA 128 (400)
T ss_pred chHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHHHHH-hcccccceEEE
Confidence 35689999999999999999999999999666555544321 3688999999999988776543 22222222222
Q ss_pred ecccc------ccccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhccCCeEEEEee
Q 001729 103 HIGHS------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (1020)
Q Consensus 103 ~i~~~------~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmS 176 (1020)
.++.. +...-+.+++.+|||.+++++..+.+.-..+.++|+|||+| .++..|-..+........|+.|++++|
T Consensus 129 cigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDe-mL~kgfk~Qiydiyr~lp~~~Qvv~~S 207 (400)
T KOG0328|consen 129 CIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADE-MLNKGFKEQIYDIYRYLPPGAQVVLVS 207 (400)
T ss_pred EecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHH-HHHhhHHHHHHHHHHhCCCCceEEEEe
Confidence 22111 23345789999999999999998877777999999999996 455566666666666678899999999
Q ss_pred cccchhhh--hHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCcccccccC
Q 001729 177 ATADITKY--RDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIK 254 (1020)
Q Consensus 177 ATld~~~~--~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (1020)
||++-+.+ .+.|- +.|+.+..-... ...-.++.+|++ .+-.
T Consensus 208 ATlp~eilemt~kfm----tdpvrilvkrde--ltlEgIKqf~v~-------------------------------ve~E 250 (400)
T KOG0328|consen 208 ATLPHEILEMTEKFM----TDPVRILVKRDE--LTLEGIKQFFVA-------------------------------VEKE 250 (400)
T ss_pred ccCcHHHHHHHHHhc----CCceeEEEecCC--Cchhhhhhheee-------------------------------echh
Confidence 99975543 33442 245554432211 011112222211 0111
Q ss_pred hhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc-eEEEE
Q 001729 255 PEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILA 333 (1020)
Q Consensus 255 ~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVLVA 333 (1020)
.-.++.+.++...+. -.+.+|||+|+..++-+.+.++ ...+.|..+||+|++++|..+++.|+.+. +||++
T Consensus 251 ewKfdtLcdLYd~Lt------ItQavIFcnTk~kVdwLtekm~--~~nftVssmHGDm~qkERd~im~dFRsg~SrvLit 322 (400)
T KOG0328|consen 251 EWKFDTLCDLYDTLT------ITQAVIFCNTKRKVDWLTEKMR--EANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLIT 322 (400)
T ss_pred hhhHhHHHHHhhhhe------hheEEEEecccchhhHHHHHHH--hhCceeeeccCCcchhHHHHHHHHhhcCCceEEEE
Confidence 112233333332222 1378999999999999999998 45588999999999999999999999999 99999
Q ss_pred eccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc-cCCeeEEeechhhccc
Q 001729 334 TNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFGT 405 (1020)
Q Consensus 334 Tniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c~rLys~~~~~~ 405 (1020)
|++-++|||+|.|+.||| ||.|.+.+.| +||+||.||. +.|.++.++..++...
T Consensus 323 TDVwaRGiDv~qVslviN--------YDLP~nre~Y----------IHRIGRSGRFGRkGvainFVk~~d~~~ 377 (400)
T KOG0328|consen 323 TDVWARGIDVQQVSLVIN--------YDLPNNRELY----------IHRIGRSGRFGRKGVAINFVKSDDLRI 377 (400)
T ss_pred echhhccCCcceeEEEEe--------cCCCccHHHH----------hhhhccccccCCcceEEEEecHHHHHH
Confidence 999999999999999999 9999876655 9999999999 7899999998876543
No 38
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.97 E-value=6.7e-31 Score=322.13 Aligned_cols=312 Identities=18% Similarity=0.150 Sum_probs=204.7
Q ss_pred hhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcCCccccccCCceehhhhHHHHHhhccccccCcccceecccc
Q 001729 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHS 107 (1020)
Q Consensus 28 i~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~~~~IivtqPrrlaa~sva~rva~e~~~~lg~~Vgy~i~~~ 107 (1020)
.++.|.++|++++.++++++++|||+|||..+..+++... +..+|+.|++.++......+.. .+.......|.....+
T Consensus 461 FRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~~-GiTLVISPLiSLmqDQV~~L~~-~GI~Aa~L~s~~s~~e 538 (1195)
T PLN03137 461 FRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALICP-GITLVISPLVSLIQDQIMNLLQ-ANIPAASLSAGMEWAE 538 (1195)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHcC-CcEEEEeCHHHHHHHHHHHHHh-CCCeEEEEECCCCHHH
Confidence 5678999999999999999999999999976666655544 4567777877776633333322 2222111111110000
Q ss_pred ------cc--ccccceEEeeechhhhHH--HHHh--ccc-cceeEEEEeecccccccc-cceeehhh--hhHhhccCCeE
Q 001729 108 ------KH--LSERSKIVFKTAGVLLDE--MRDR--GLN-ALKYKVIILDEVHERSVE-SDLVLVCV--KQLLLKKNDLR 171 (1020)
Q Consensus 108 ------~~--~~~~t~Iiv~Tpg~Ll~~--l~~~--~l~-l~~~s~IIIDEaHER~l~-~d~ll~~l--k~ll~~~~~lk 171 (1020)
.. .....+|+|+|||+|... +... .+. ...+++|||||||..+-. .||...+. ..+....++.+
T Consensus 539 q~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vP 618 (1195)
T PLN03137 539 QLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIP 618 (1195)
T ss_pred HHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCC
Confidence 00 124689999999998531 2211 111 125899999999953322 35544432 23445567889
Q ss_pred EEEeecccchhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCccccc
Q 001729 172 VVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANA 251 (1020)
Q Consensus 172 iIlmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1020)
++++|||++.....+....++...++.+ ..+..+.. ..|...+.
T Consensus 619 ilALTATAT~~V~eDI~~~L~l~~~~vf--r~Sf~RpN----------------------------L~y~Vv~k------ 662 (1195)
T PLN03137 619 VLALTATATASVKEDVVQALGLVNCVVF--RQSFNRPN----------------------------LWYSVVPK------ 662 (1195)
T ss_pred eEEEEecCCHHHHHHHHHHcCCCCcEEe--ecccCccc----------------------------eEEEEecc------
Confidence 9999999976655554444332222111 11100000 00000000
Q ss_pred ccChhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc-eE
Q 001729 252 EIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KV 330 (1020)
Q Consensus 252 ~~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kV 330 (1020)
.....+.+.+++ ..... .+..||||.++.+++.+++.|.. .++.+..+||+|+.++|..+++.|..++ +|
T Consensus 663 --~kk~le~L~~~I---~~~~~--~esgIIYC~SRke~E~LAe~L~~--~Gika~~YHAGLs~eeR~~vqe~F~~Gei~V 733 (1195)
T PLN03137 663 --TKKCLEDIDKFI---KENHF--DECGIIYCLSRMDCEKVAERLQE--FGHKAAFYHGSMDPAQRAFVQKQWSKDEINI 733 (1195)
T ss_pred --chhHHHHHHHHH---Hhccc--CCCceeEeCchhHHHHHHHHHHH--CCCCeeeeeCCCCHHHHHHHHHHHhcCCCcE
Confidence 001111122222 21111 24789999999999999999984 5688999999999999999999999998 99
Q ss_pred EEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc-cCCeeEEeechhhcc
Q 001729 331 ILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (1020)
Q Consensus 331 LVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c~rLys~~~~~ 404 (1020)
||||+++++|||+|+|++||+ ||.|..++.| +||+|||||. .+|.|+.+|+..++.
T Consensus 734 LVATdAFGMGIDkPDVR~VIH--------ydlPkSiEsY----------yQriGRAGRDG~~g~cILlys~~D~~ 790 (1195)
T PLN03137 734 ICATVAFGMGINKPDVRFVIH--------HSLPKSIEGY----------HQECGRAGRDGQRSSCVLYYSYSDYI 790 (1195)
T ss_pred EEEechhhcCCCccCCcEEEE--------cCCCCCHHHH----------HhhhcccCCCCCCceEEEEecHHHHH
Confidence 999999999999999999999 9999865555 9999999999 689999999987653
No 39
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.97 E-value=5.1e-31 Score=293.69 Aligned_cols=317 Identities=19% Similarity=0.232 Sum_probs=227.9
Q ss_pred cchhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcCCc---------cccccCCceehhhhHHHHHh---hccc
Q 001729 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENME---------PILCTQPRRFAVVAVAKMVA---KGRN 93 (1020)
Q Consensus 26 LPi~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~~~---------~IivtqPrrlaa~sva~rva---~e~~ 93 (1020)
.-++.+|.+.|+..+.|++|+-.|-||||||.++..+++++.++ -.+|+.|+|.+|.|+...+. ...+
T Consensus 90 v~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk~h~ 169 (758)
T KOG0343|consen 90 VKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGKHHD 169 (758)
T ss_pred ccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhhccc
Confidence 34677999999999999999999999999999998888875321 35566677888887766543 3333
Q ss_pred cccCccccee-ccccccccccceEEeeechhhhHHHHHhc-cccceeEEEEeecccccccccceeehhhhhHhhccCCeE
Q 001729 94 CELGGEVGYH-IGHSKHLSERSKIVFKTAGVLLDEMRDRG-LNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLR 171 (1020)
Q Consensus 94 ~~lg~~Vgy~-i~~~~~~~~~t~Iiv~Tpg~Ll~~l~~~~-l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lk 171 (1020)
...|-.+|.. +.++...-...+|+|||||+||+.|...+ +.-.++.++|+|||+ |.++++|--.+-..+-...+..|
T Consensus 170 fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEAD-R~LDMGFk~tL~~Ii~~lP~~RQ 248 (758)
T KOG0343|consen 170 FSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEAD-RMLDMGFKKTLNAIIENLPKKRQ 248 (758)
T ss_pred cccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHH-HHHHHhHHHHHHHHHHhCChhhe
Confidence 3334333322 22333334578999999999999998653 334489999999999 99999887766666666677889
Q ss_pred EEEeeccc--chhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCccc
Q 001729 172 VVLMSATA--DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMA 249 (1020)
Q Consensus 172 iIlmSATl--d~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1020)
.+++|||- ...++.+.- +..+.-+.+..-.. ..+| ..+...|...
T Consensus 249 TLLFSATqt~svkdLaRLs--L~dP~~vsvhe~a~----~atP---------------------~~L~Q~y~~v------ 295 (758)
T KOG0343|consen 249 TLLFSATQTKSVKDLARLS--LKDPVYVSVHENAV----AATP---------------------SNLQQSYVIV------ 295 (758)
T ss_pred eeeeecccchhHHHHHHhh--cCCCcEEEEecccc----ccCh---------------------hhhhheEEEE------
Confidence 99999996 333343331 11122222211000 0000 0000011000
Q ss_pred ccccChhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc-
Q 001729 250 NAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR- 328 (1020)
Q Consensus 250 ~~~~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr- 328 (1020)
...+.| ++++.+..... ..++|||+.+.+++..+++.+..+.+++.+..|||.|.+..|..++..|-..+
T Consensus 296 ------~l~~Ki-~~L~sFI~shl--k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~ 366 (758)
T KOG0343|consen 296 ------PLEDKI-DMLWSFIKSHL--KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRA 366 (758)
T ss_pred ------ehhhHH-HHHHHHHHhcc--ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcc
Confidence 111112 22222222222 35899999999999999999998889999999999999999999999998877
Q ss_pred eEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc-cCCeeEEeechhhc
Q 001729 329 KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFF 403 (1020)
Q Consensus 329 kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c~rLys~~~~ 403 (1020)
-|++||+++++|+|+|.|++||. ||.|.++++| +||+||+.|. ..|.++.+.++++.
T Consensus 367 ~vLF~TDv~aRGLDFpaVdwViQ--------~DCPedv~tY----------IHRvGRtAR~~~~G~sll~L~psEe 424 (758)
T KOG0343|consen 367 VVLFCTDVAARGLDFPAVDWVIQ--------VDCPEDVDTY----------IHRVGRTARYKERGESLLMLTPSEE 424 (758)
T ss_pred eEEEeehhhhccCCCcccceEEE--------ecCchhHHHH----------HHHhhhhhcccCCCceEEEEcchhH
Confidence 99999999999999999999999 9999988777 9999999999 78999999888663
No 40
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.97 E-value=7.8e-31 Score=324.08 Aligned_cols=321 Identities=17% Similarity=0.137 Sum_probs=207.8
Q ss_pred chhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcC----CccccccCCceehhhhHHHHHhhccccccCcccce
Q 001729 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN----MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (1020)
Q Consensus 27 Pi~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~----~~~IivtqPrrlaa~sva~rva~e~~~~lg~~Vgy 102 (1020)
.++++|.++++.+++++++++++|||||||.++..++++.. ..+++++.|+|.+|.++.+.+.... ..+..++.
T Consensus 36 ~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l~--~~~i~v~~ 113 (742)
T TIGR03817 36 RPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLRAVRELT--LRGVRPAT 113 (742)
T ss_pred cCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHHhc--cCCeEEEE
Confidence 47899999999999999999999999999987777766532 2478888999999999998876642 11222221
Q ss_pred eccc-----cccccccceEEeeechhhhHHHHHh----ccccceeEEEEeeccccccccccee---ehhhhhHh---h-c
Q 001729 103 HIGH-----SKHLSERSKIVFKTAGVLLDEMRDR----GLNALKYKVIILDEVHERSVESDLV---LVCVKQLL---L-K 166 (1020)
Q Consensus 103 ~i~~-----~~~~~~~t~Iiv~Tpg~Ll~~l~~~----~l~l~~~s~IIIDEaHER~l~~d~l---l~~lk~ll---~-~ 166 (1020)
..+. ......+++|+++||++|...+... ...+.++++|||||||+ ..+ .|. ..+++++. . .
T Consensus 114 ~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~-~~g-~fg~~~~~il~rL~ri~~~~ 191 (742)
T TIGR03817 114 YDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHS-YRG-VFGSHVALVLRRLRRLCARY 191 (742)
T ss_pred EeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhh-ccC-ccHHHHHHHHHHHHHHHHhc
Confidence 1111 1122456899999999987543311 01145899999999994 222 222 12333332 2 2
Q ss_pred cCCeEEEEeeccc-chhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCC
Q 001729 167 KNDLRVVLMSATA-DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPS 245 (1020)
Q Consensus 167 ~~~lkiIlmSATl-d~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~ 245 (1020)
..+.|+|++|||+ ++..+.+.+.. .++.++...+.+... ....+. ...... . ....
T Consensus 192 g~~~q~i~~SATi~n~~~~~~~l~g----~~~~~i~~~~~~~~~---~~~~~~-------------~p~~~~--~-~~~~ 248 (742)
T TIGR03817 192 GASPVFVLASATTADPAAAASRLIG----APVVAVTEDGSPRGA---RTVALW-------------EPPLTE--L-TGEN 248 (742)
T ss_pred CCCCEEEEEecCCCCHHHHHHHHcC----CCeEEECCCCCCcCc---eEEEEe-------------cCCccc--c-cccc
Confidence 3568999999998 44444444322 223332221111100 000000 000000 0 0000
Q ss_pred CcccccccChhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccc------cceEEEEeecccchHHHHH
Q 001729 246 PSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLS------SFFKVHILHSSVDTEQALM 319 (1020)
Q Consensus 246 ~~~~~~~~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~------~~~~v~~lHs~l~~~er~~ 319 (1020)
.............+++.+++ .. +.++||||++++.++.++..|.... .+..+..+||++++++|..
T Consensus 249 ~~~~r~~~~~~~~~~l~~l~----~~----~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ 320 (742)
T TIGR03817 249 GAPVRRSASAEAADLLADLV----AE----GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRE 320 (742)
T ss_pred ccccccchHHHHHHHHHHHH----HC----CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHH
Confidence 00000000111222333333 21 2589999999999999998876421 1356889999999999999
Q ss_pred HHHhhhccc-eEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc-cCCeeEEe
Q 001729 320 AMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRL 397 (1020)
Q Consensus 320 i~~~f~~gr-kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c~rL 397 (1020)
+++.|++|+ +||||||++|+|||||++++||+ ||.|. |.++|+||+|||||. +.|.++.+
T Consensus 321 ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~--------~~~P~----------s~~~y~qRiGRaGR~G~~g~ai~v 382 (742)
T TIGR03817 321 LERALRDGELLGVATTNALELGVDISGLDAVVI--------AGFPG----------TRASLWQQAGRAGRRGQGALVVLV 382 (742)
T ss_pred HHHHHHcCCceEEEECchHhccCCcccccEEEE--------eCCCC----------CHHHHHHhccccCCCCCCcEEEEE
Confidence 999999999 99999999999999999999999 88887 456669999999999 67999988
Q ss_pred ech
Q 001729 398 VTK 400 (1020)
Q Consensus 398 ys~ 400 (1020)
.+.
T Consensus 383 ~~~ 385 (742)
T TIGR03817 383 ARD 385 (742)
T ss_pred eCC
Confidence 863
No 41
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.97 E-value=3e-30 Score=324.87 Aligned_cols=316 Identities=19% Similarity=0.220 Sum_probs=207.2
Q ss_pred hhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcC-----------CccccccCCceehhhhHHHHHhh------
Q 001729 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN-----------MEPILCTQPRRFAVVAVAKMVAK------ 90 (1020)
Q Consensus 28 i~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~-----------~~~IivtqPrrlaa~sva~rva~------ 90 (1020)
++++|.++++.+.++++++|+||||||||.++..++++.. ...++++.|++.++.++.+++..
T Consensus 33 ~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~i~ 112 (876)
T PRK13767 33 FTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLTEIR 112 (876)
T ss_pred CCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999987776665321 12578888999999988775432
Q ss_pred ----cccccc-Ccccceeccccc------cccccceEEeeechhhhHHHHHhcc--ccceeEEEEeecccccccccce--
Q 001729 91 ----GRNCEL-GGEVGYHIGHSK------HLSERSKIVFKTAGVLLDEMRDRGL--NALKYKVIILDEVHERSVESDL-- 155 (1020)
Q Consensus 91 ----e~~~~l-g~~Vgy~i~~~~------~~~~~t~Iiv~Tpg~Ll~~l~~~~l--~l~~~s~IIIDEaHER~l~~d~-- 155 (1020)
..|..+ +..|+...+... .....++|+++|||.|...+....+ .+.++++|||||+|+ ..+...
T Consensus 113 ~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~-l~~~~RG~ 191 (876)
T PRK13767 113 EIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHS-LAENKRGV 191 (876)
T ss_pred HHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhh-hccCccHH
Confidence 223332 222332222211 1234679999999999766653322 245899999999994 332221
Q ss_pred -eehhhhhHhhcc-CCeEEEEeeccc-chhhhhHHHhhcC---CcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCc
Q 001729 156 -VLVCVKQLLLKK-NDLRVVLMSATA-DITKYRDYFRDLG---RGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDH 229 (1020)
Q Consensus 156 -ll~~lk~ll~~~-~~lkiIlmSATl-d~~~~~~~f~~~~---~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~ 229 (1020)
+...+.++.... ++.++|++|||+ +.+.+.+|+.... ...++.++..... ..+...+.
T Consensus 192 ~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~---k~~~i~v~------------- 255 (876)
T PRK13767 192 HLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFV---KPFDIKVI------------- 255 (876)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCC---ccceEEEe-------------
Confidence 222334443333 678999999998 5677888876431 1222333221110 00000000
Q ss_pred cccccccccccCCCCC-CcccccccChhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccc----cceE
Q 001729 230 GMTSELSSLRYCSGPS-PSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLS----SFFK 304 (1020)
Q Consensus 230 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~----~~~~ 304 (1020)
..... ...............+.+++ .. .+++||||++++.++.++..|.... .+..
T Consensus 256 -----------~p~~~l~~~~~~~~~~~l~~~L~~~i----~~----~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~ 316 (876)
T PRK13767 256 -----------SPVDDLIHTPAEEISEALYETLHELI----KE----HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDN 316 (876)
T ss_pred -----------ccCccccccccchhHHHHHHHHHHHH----hc----CCCEEEEeCCHHHHHHHHHHHHHhchhhccccc
Confidence 00000 00000011112222222222 11 3589999999999999999887532 2357
Q ss_pred EEEeecccchHHHHHHHHhhhccc-eEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhc
Q 001729 305 VHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRR 383 (1020)
Q Consensus 305 v~~lHs~l~~~er~~i~~~f~~gr-kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~ 383 (1020)
+..+||+|+.++|..+++.|++|. +|||||+++|+|||+|+|++||+ |+.|. |.++|+||+
T Consensus 317 i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~--------~~~P~----------sv~~ylQRi 378 (876)
T PRK13767 317 IGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVL--------LGSPK----------SVSRLLQRI 378 (876)
T ss_pred eeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEE--------eCCCC----------CHHHHHHhc
Confidence 899999999999999999999999 99999999999999999999998 88876 556679999
Q ss_pred CCCCcc----cCCeeEEe
Q 001729 384 GRTGRT----CDGQVYRL 397 (1020)
Q Consensus 384 GRAGR~----~~G~c~rL 397 (1020)
|||||. ..|.++.+
T Consensus 379 GRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 379 GRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred ccCCCCCCCCCcEEEEEc
Confidence 999987 24666654
No 42
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.97 E-value=5.1e-31 Score=322.36 Aligned_cols=422 Identities=18% Similarity=0.210 Sum_probs=269.6
Q ss_pred chhhhHHHHHHHH-hhccEEEEecCCCCCCcCChhhhhhhcC---CccccccCCceehhhhHHHHHh--hccccccCccc
Q 001729 27 PVMSLREKIVEKV-LENRVTLIVGETGCGKSSQVPQFLLAEN---MEPILCTQPRRFAVVAVAKMVA--KGRNCELGGEV 100 (1020)
Q Consensus 27 Pi~~~Q~eil~~i-~~~~~vII~apTGSGKTt~ip~~lle~~---~~~IivtqPrrlaa~sva~rva--~e~~~~lg~~V 100 (1020)
-+++.|++++... .+++|+||++|||||||......++... ..+++++.|.+.+|.+.++.+. +.+| ..|
T Consensus 31 el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~~G----irV 106 (766)
T COG1204 31 ELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEELG----IRV 106 (766)
T ss_pred HhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHHhcC----CEE
Confidence 3556677777765 4569999999999999976666665433 3589999999999999999888 4444 444
Q ss_pred ceeccccc---cccccceEEeeechhhhHHHHHhccccceeEEEEeeccccccc--ccceeehhhhhHhhccCCeEEEEe
Q 001729 101 GYHIGHSK---HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSV--ESDLVLVCVKQLLLKKNDLRVVLM 175 (1020)
Q Consensus 101 gy~i~~~~---~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l--~~d~ll~~lk~ll~~~~~lkiIlm 175 (1020)
+-.++..+ ..-.+++|+|+||+.+-..+++.......+++|||||+|--.- ..-.+..++.++....+..|||++
T Consensus 107 ~~~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~~~rivgL 186 (766)
T COG1204 107 GISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNELIRIVGL 186 (766)
T ss_pred EEecCCcccchhhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHHHHhhCcceEEEEE
Confidence 44443333 2236799999999999998887766566999999999993111 113455666777777777999999
Q ss_pred eccc-chhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCcccccccC
Q 001729 176 SATA-DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIK 254 (1020)
Q Consensus 176 SATl-d~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (1020)
|||+ |.+.+++|++.- ++.....|.. +-..+.+.. . ......... ......
T Consensus 187 SATlpN~~evA~wL~a~----~~~~~~rp~~-----l~~~v~~~~--------------~---~~~~~~~~k-~~~~~~- 238 (766)
T COG1204 187 SATLPNAEEVADWLNAK----LVESDWRPVP-----LRRGVPYVG--------------A---FLGADGKKK-TWPLLI- 238 (766)
T ss_pred eeecCCHHHHHHHhCCc----ccccCCCCcc-----cccCCccce--------------E---EEEecCccc-cccccc-
Confidence 9997 999999999751 1110001100 000000000 0 000000000 000111
Q ss_pred hhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccc--------------------cc--------------
Q 001729 255 PEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKP--------------------LS-------------- 300 (1020)
Q Consensus 255 ~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~--------------------~~-------------- 300 (1020)
.+.+..++...... ++++|||++++..+...++.|.. ..
T Consensus 239 ---~~~~~~~v~~~~~~----~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e 311 (766)
T COG1204 239 ---DNLALELVLESLAE----GGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAE 311 (766)
T ss_pred ---hHHHHHHHHHHHhc----CCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHH
Confidence 11222222222211 47999999999998887777651 00
Q ss_pred -cceEEEEeecccchHHHHHHHHhhhccc-eEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhH
Q 001729 301 -SFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQ 378 (1020)
Q Consensus 301 -~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas 378 (1020)
-...+.++|++|+.++|..+++.|+.|. +||+||++++.|+|.|.-++||- ...+||+..+ .+.|+..+
T Consensus 312 ~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk----~~~~y~~~~g-----~~~i~~~d 382 (766)
T COG1204 312 LVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIK----DTRRYDPKGG-----IVDIPVLD 382 (766)
T ss_pred HHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEe----eeEEEcCCCC-----eEECchhh
Confidence 0124788999999999999999999999 99999999999999999888883 2344776222 56779999
Q ss_pred HHHhcCCCCcc---cCCeeEEee-chh---hcccccccCCcceehhhHhHHH-HHhhccCccccCCh------hHHHhhh
Q 001729 379 AEQRRGRTGRT---CDGQVYRLV-TKS---FFGTLEDHECPAILRLSLRLQV-LLICCAESKAISDP------KVLLQKA 444 (1020)
Q Consensus 379 ~~QR~GRAGR~---~~G~c~rLy-s~~---~~~~l~~~~~PEI~r~~L~~~v-L~l~~~~~~~l~~~------~~~l~~~ 444 (1020)
+.|++|||||. .-|..+.+. +.+ .+........||...+.|..-. +...+......++. ..|+..+
T Consensus 383 v~QM~GRAGRPg~d~~G~~~i~~~~~~~~~~~~~~~~~~~~e~~~s~l~~~~~~~~~l~~v~~~~~~v~~~~~~~f~~~t 462 (766)
T COG1204 383 VLQMAGRAGRPGYDDYGEAIILATSHDELEYLAELYIQSEPEPIESKLGDELNLRTFLLGVISVGDAVSWLELTDFYERT 462 (766)
T ss_pred HhhccCcCCCCCcCCCCcEEEEecCccchhHHHHHhhccCcchHHHhhcccccchheEEEEEeccchhhHHHHHHHHHHH
Confidence 99999999999 346666555 222 2234455666665333322111 11111111122221 1222222
Q ss_pred cCCC-------CccchhhHHHHHHHHh-hhhhcCCCCccCccccchhccccccccceeEEEE
Q 001729 445 LDPP-------YPEVVGDALDLLDHKR-ALQKISPRGRYEPTFYGRLLASFSLSFDASVLVL 498 (1020)
Q Consensus 445 ldpP-------~~~~i~~al~~L~~lg-ald~~~~~g~~~lT~lG~~~a~lpldp~~a~~ll 498 (1020)
.-.| ....+..++..|.+.+ .++.. .+.+..|++|+.++++.++|..++.+.
T Consensus 463 ~~~~~~~~~~~~~~~i~~~~~~L~~~~~~~~~~--~~~~~ate~g~~~s~~yi~~~sa~~~~ 522 (766)
T COG1204 463 FYNPQTYGEGMLREEILASLRYLEENGLILDAD--WEALHATELGKLVSRLYIDPESAKIFR 522 (766)
T ss_pred HhhhhhccccchHHHHHHHHHHHHhccceeecc--ccccchhHHHHHhhhccCCHHHHHHHH
Confidence 2222 2346788899999886 55542 245678999999999999999887654
No 43
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=3.4e-30 Score=290.95 Aligned_cols=316 Identities=20% Similarity=0.234 Sum_probs=226.4
Q ss_pred cchhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcC---------------CccccccCCceehhhhHHHHHhh
Q 001729 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN---------------MEPILCTQPRRFAVVAVAKMVAK 90 (1020)
Q Consensus 26 LPi~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~---------------~~~IivtqPrrlaa~sva~rva~ 90 (1020)
--.+++|+-.++.+..+++++++|+||||||.++..++++.. ...++++.|+|.++.|+..+..+
T Consensus 95 ~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k 174 (482)
T KOG0335|consen 95 TKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARK 174 (482)
T ss_pred cCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHh
Confidence 345789999999999999999999999999988877776432 13688999999999999988777
Q ss_pred ccccc-cCcccceec---c-ccccccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccc-cceeehhhhhHh
Q 001729 91 GRNCE-LGGEVGYHI---G-HSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVE-SDLVLVCVKQLL 164 (1020)
Q Consensus 91 e~~~~-lg~~Vgy~i---~-~~~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~-~d~ll~~lk~ll 164 (1020)
..+.. +-..+.|.- + ........++|+|+|||.|...+..+.+.+.++.++|||||+ |+++ .+|...+-+.+.
T Consensus 175 ~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEAD-rMlD~mgF~p~Ir~iv~ 253 (482)
T KOG0335|consen 175 FSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEAD-RMLDEMGFEPQIRKIVE 253 (482)
T ss_pred hcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchH-HhhhhccccccHHHHhc
Confidence 54322 111222221 1 112335689999999999999999888888899999999999 8888 788777666554
Q ss_pred hcc----CCeEEEEeecccc--hhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCcccccccccc
Q 001729 165 LKK----NDLRVVLMSATAD--ITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSL 238 (1020)
Q Consensus 165 ~~~----~~lkiIlmSATld--~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~ 238 (1020)
... ...+.+++|||.+ ...+..+|-.-. .....+..+........ .++.++
T Consensus 254 ~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~-yi~laV~rvg~~~~ni~--q~i~~V-------------------- 310 (482)
T KOG0335|consen 254 QLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDN-YIFLAVGRVGSTSENIT--QKILFV-------------------- 310 (482)
T ss_pred ccCCCCccceeEEEEeccCChhhhhhHHHHhhcc-ceEEEEeeeccccccce--eEeeee--------------------
Confidence 432 3689999999963 334444443200 11122222221110000 000000
Q ss_pred ccCCCCCCcccccccChhHHHHHHHhhhhhc---cCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchH
Q 001729 239 RYCSGPSPSMANAEIKPEVHKLIHDLVLHIH---KNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTE 315 (1020)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~li~~ll~~i~---~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~ 315 (1020)
.+. .....+.+++.... ...+.....++|||.+++.+..+...|. ..++....+||..++.
T Consensus 311 ----------~~~----~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~--~~~~~~~sIhg~~tq~ 374 (482)
T KOG0335|consen 311 ----------NEM----EKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLS--SNGYPAKSIHGDRTQI 374 (482)
T ss_pred ----------cch----hhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHh--cCCCCceeecchhhhh
Confidence 000 01111112222111 1111112489999999999999999998 4558889999999999
Q ss_pred HHHHHHHhhhccc-eEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc-cCCe
Q 001729 316 QALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQ 393 (1020)
Q Consensus 316 er~~i~~~f~~gr-kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~ 393 (1020)
+|.+.++.|+.|+ .|+|||||+++|+|||+|++||+ ||.|...+.| +||+||+||. ..|.
T Consensus 375 er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVIn--------yDmP~d~d~Y----------vHRIGRTGR~Gn~G~ 436 (482)
T KOG0335|consen 375 EREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVIN--------YDMPADIDDY----------VHRIGRTGRVGNGGR 436 (482)
T ss_pred HHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEE--------eecCcchhhH----------HHhccccccCCCCce
Confidence 9999999999999 99999999999999999999999 9999988877 9999999999 5799
Q ss_pred eEEeec
Q 001729 394 VYRLVT 399 (1020)
Q Consensus 394 c~rLys 399 (1020)
+..|+.
T Consensus 437 atsf~n 442 (482)
T KOG0335|consen 437 ATSFFN 442 (482)
T ss_pred eEEEec
Confidence 999988
No 44
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.96 E-value=1.1e-29 Score=309.87 Aligned_cols=306 Identities=19% Similarity=0.198 Sum_probs=209.1
Q ss_pred hhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcCCccccccCCceehhhhHHHHHhhccccccCcccceeccc-
Q 001729 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGH- 106 (1020)
Q Consensus 28 i~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~~~~IivtqPrrlaa~sva~rva~e~~~~lg~~Vgy~i~~- 106 (1020)
.++.|.++++++++++++++++|||+|||..+..+++... +..+|+.|++.++.+....+.. +|.. +++....
T Consensus 14 fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~~-g~~lVisPl~sL~~dq~~~l~~-~gi~----~~~~~s~~ 87 (591)
T TIGR01389 14 FRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLLK-GLTVVISPLISLMKDQVDQLRA-AGVA----AAYLNSTL 87 (591)
T ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHcC-CcEEEEcCCHHHHHHHHHHHHH-cCCc----EEEEeCCC
Confidence 5678999999999999999999999999976655555433 3456677888887777776654 3332 2222111
Q ss_pred --c-------ccccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccc-cceeehh--hhhHhhccCCeEEEE
Q 001729 107 --S-------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVE-SDLVLVC--VKQLLLKKNDLRVVL 174 (1020)
Q Consensus 107 --~-------~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~-~d~ll~~--lk~ll~~~~~lkiIl 174 (1020)
. .......+|+|+||+.|........+...++++|||||||..+.. .||...+ +..+....++.++|+
T Consensus 88 ~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~~~~vi~ 167 (591)
T TIGR01389 88 SAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQVPRIA 167 (591)
T ss_pred CHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCCCCCEEE
Confidence 0 112346789999999997644333344458999999999964422 3443332 233344456667999
Q ss_pred eecccchhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCcccccccC
Q 001729 175 MSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIK 254 (1020)
Q Consensus 175 mSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (1020)
+|||++.....+....++...+..+. ....+.. ..|.... .
T Consensus 168 lTAT~~~~~~~~i~~~l~~~~~~~~~--~~~~r~n----------------------------l~~~v~~---------~ 208 (591)
T TIGR01389 168 LTATADAETRQDIRELLRLADANEFI--TSFDRPN----------------------------LRFSVVK---------K 208 (591)
T ss_pred EEeCCCHHHHHHHHHHcCCCCCCeEe--cCCCCCC----------------------------cEEEEEe---------C
Confidence 99998776655555443322221111 1100000 0000000 0
Q ss_pred hhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc-eEEEE
Q 001729 255 PEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILA 333 (1020)
Q Consensus 255 ~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVLVA 333 (1020)
....+.+.+.+ .... +++.||||+++++++.+++.|.. .++.+..+||+|+.++|..+++.|..|+ +||||
T Consensus 209 ~~~~~~l~~~l---~~~~---~~~~IIf~~sr~~~e~la~~L~~--~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVa 280 (591)
T TIGR01389 209 NNKQKFLLDYL---KKHR---GQSGIIYASSRKKVEELAERLES--QGISALAYHAGLSNKVRAENQEDFLYDDVKVMVA 280 (591)
T ss_pred CCHHHHHHHHH---HhcC---CCCEEEEECcHHHHHHHHHHHHh--CCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEE
Confidence 01111222222 2111 35889999999999999999974 4578899999999999999999999998 99999
Q ss_pred eccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc-cCCeeEEeechhhcc
Q 001729 334 TNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (1020)
Q Consensus 334 Tniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c~rLys~~~~~ 404 (1020)
|+++++|||+|+|++||+ ||.+.+. .+|+||+|||||. .+|.|+.+|+..+..
T Consensus 281 T~a~~~GID~p~v~~VI~--------~~~p~s~----------~~y~Q~~GRaGR~G~~~~~il~~~~~d~~ 334 (591)
T TIGR01389 281 TNAFGMGIDKPNVRFVIH--------YDMPGNL----------ESYYQEAGRAGRDGLPAEAILLYSPADIA 334 (591)
T ss_pred echhhccCcCCCCCEEEE--------cCCCCCH----------HHHhhhhccccCCCCCceEEEecCHHHHH
Confidence 999999999999999999 8888744 4569999999998 589999999987653
No 45
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=9e-30 Score=281.01 Aligned_cols=315 Identities=23% Similarity=0.285 Sum_probs=229.7
Q ss_pred chhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcCC---------c-cccccCCceehhhhHHH---HHhhccc
Q 001729 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM---------E-PILCTQPRRFAVVAVAK---MVAKGRN 93 (1020)
Q Consensus 27 Pi~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~~---------~-~IivtqPrrlaa~sva~---rva~e~~ 93 (1020)
-.+++|.++++..+.+++||-+|-||||||.++...++.+.. + ..+++.|+|.+|.|+.. .+.+-.|
T Consensus 245 kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~yg 324 (731)
T KOG0339|consen 245 KPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYG 324 (731)
T ss_pred cCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhcc
Confidence 356789999999999999999999999999887776654321 2 35677888888888744 3333333
Q ss_pred cccCccccee--ccccccccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhccCCeE
Q 001729 94 CELGGEVGYH--IGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLR 171 (1020)
Q Consensus 94 ~~lg~~Vgy~--i~~~~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lk 171 (1020)
..+-...|-. ..+.+.+..++.|+|||||+|+.++.-+..++.+++++||||++ |+.+..|...+-.+....+|+.|
T Consensus 325 l~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEad-rmfdmGfe~qVrSI~~hirpdrQ 403 (731)
T KOG0339|consen 325 LRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEAD-RMFDMGFEPQVRSIKQHIRPDRQ 403 (731)
T ss_pred ceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechh-hhhccccHHHHHHHHhhcCCcce
Confidence 2211111100 11223345789999999999999988888888899999999999 99999998887777777899999
Q ss_pred EEEeecccc--hhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCccc
Q 001729 172 VVLMSATAD--ITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMA 249 (1020)
Q Consensus 172 iIlmSATld--~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1020)
.|++|||.. .+++.+-+ ++ .+|.++.......+... .+... .
T Consensus 404 tllFsaTf~~kIe~lard~--L~--dpVrvVqg~vgean~dI----------TQ~V~----------------------V 447 (731)
T KOG0339|consen 404 TLLFSATFKKKIEKLARDI--LS--DPVRVVQGEVGEANEDI----------TQTVS----------------------V 447 (731)
T ss_pred EEEeeccchHHHHHHHHHH--hc--CCeeEEEeehhccccch----------hheee----------------------e
Confidence 999999974 33333322 11 23444332211000000 00000 0
Q ss_pred ccccChhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc-
Q 001729 250 NAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR- 328 (1020)
Q Consensus 250 ~~~~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr- 328 (1020)
-........ .++.++..... .|++|||+.-+.++++++..|. ..++.+..+||++.+.+|.+++..|+.++
T Consensus 448 ~~s~~~Kl~----wl~~~L~~f~S--~gkvlifVTKk~~~e~i~a~Lk--lk~~~v~llhgdkdqa~rn~~ls~fKkk~~ 519 (731)
T KOG0339|consen 448 CPSEEKKLN----WLLRHLVEFSS--EGKVLIFVTKKADAEEIAANLK--LKGFNVSLLHGDKDQAERNEVLSKFKKKRK 519 (731)
T ss_pred ccCcHHHHH----HHHHHhhhhcc--CCcEEEEEeccCCHHHHHHHhc--cccceeeeecCchhhHHHHHHHHHHhhcCC
Confidence 000111122 33333333333 4799999999999999999998 56699999999999999999999999998
Q ss_pred eEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc-cCCeeEEeechhhcc
Q 001729 329 KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (1020)
Q Consensus 329 kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c~rLys~~~~~ 404 (1020)
.|+|+|+++++|+|||+++.||+ ||.-..++.+ .||+||+||. ..|..|.|+|+.+.+
T Consensus 520 ~VlvatDvaargldI~~ikTVvn--------yD~ardIdth----------thrigrtgRag~kGvayTlvTeKDa~ 578 (731)
T KOG0339|consen 520 PVLVATDVAARGLDIPSIKTVVN--------YDFARDIDTH----------THRIGRTGRAGEKGVAYTLVTEKDAE 578 (731)
T ss_pred ceEEEeeHhhcCCCccccceeec--------ccccchhHHH----------HHHhhhcccccccceeeEEechhhHH
Confidence 99999999999999999999999 9999988877 9999999999 579999999987654
No 46
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=1.2e-29 Score=273.68 Aligned_cols=313 Identities=20% Similarity=0.247 Sum_probs=228.0
Q ss_pred hhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhc-----------CCccccccCCceehhhhHHHHHhhcccccc
Q 001729 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE-----------NMEPILCTQPRRFAVVAVAKMVAKGRNCEL 96 (1020)
Q Consensus 28 i~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~-----------~~~~IivtqPrrlaa~sva~rva~e~~~~l 96 (1020)
.+|+|.++.+.++++.++|.+|.||+|||..++..-+.+ ....+++..|||.+|.++.-.+.++.-..+
T Consensus 243 PtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyng~ 322 (629)
T KOG0336|consen 243 PTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYNGL 322 (629)
T ss_pred CCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhcCc
Confidence 567899999999999999999999999996554432211 112688888999999988776665432221
Q ss_pred Cccccee--ccc--cccccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhccCCeEE
Q 001729 97 GGEVGYH--IGH--SKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRV 172 (1020)
Q Consensus 97 g~~Vgy~--i~~--~~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lki 172 (1020)
....-|. -|. -..+..+..|+++|||.|.++..+..+++..++++|+|||+ |+++++|-..+-|.++..+||.++
T Consensus 323 ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEAD-rMLDMgFEpqIrkilldiRPDRqt 401 (629)
T KOG0336|consen 323 KSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEAD-RMLDMGFEPQIRKILLDIRPDRQT 401 (629)
T ss_pred ceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchh-hhhcccccHHHHHHhhhcCCccee
Confidence 1111121 121 12346688999999999999998888888899999999999 999999999999999999999999
Q ss_pred EEeecccchh--hhh-HHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCccc
Q 001729 173 VLMSATADIT--KYR-DYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMA 249 (1020)
Q Consensus 173 IlmSATld~~--~~~-~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1020)
++.|||.+.. +++ .|... ++-+ ++..-. + ..+.......
T Consensus 402 vmTSATWP~~VrrLa~sY~Ke-----p~~v-~vGsLd---L----------------------------~a~~sVkQ~i- 443 (629)
T KOG0336|consen 402 VMTSATWPEGVRRLAQSYLKE-----PMIV-YVGSLD---L----------------------------VAVKSVKQNI- 443 (629)
T ss_pred eeecccCchHHHHHHHHhhhC-----ceEE-Eecccc---e----------------------------eeeeeeeeeE-
Confidence 9999997532 222 33322 2211 111000 0 0000000000
Q ss_pred ccccChhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc-
Q 001729 250 NAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR- 328 (1020)
Q Consensus 250 ~~~~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr- 328 (1020)
...-..+..+.+..++..... ..++||||..+..++.+...|. ..++....+||+-.+.+|+..++.|++|.
T Consensus 444 ~v~~d~~k~~~~~~f~~~ms~-----ndKvIiFv~~K~~AD~LSSd~~--l~gi~~q~lHG~r~Q~DrE~al~~~ksG~v 516 (629)
T KOG0336|consen 444 IVTTDSEKLEIVQFFVANMSS-----NDKVIIFVSRKVMADHLSSDFC--LKGISSQSLHGNREQSDREMALEDFKSGEV 516 (629)
T ss_pred EecccHHHHHHHHHHHHhcCC-----CceEEEEEechhhhhhccchhh--hcccchhhccCChhhhhHHHHHHhhhcCce
Confidence 000111222333333332222 2589999999988888877766 45688889999999999999999999999
Q ss_pred eEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc-cCCeeEEeechhhcc
Q 001729 329 KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (1020)
Q Consensus 329 kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c~rLys~~~~~ 404 (1020)
+|||||++|.+|+|+|+|++|++ ||.|.+++.| .||+||+||. +.|..+.+++..++.
T Consensus 517 rILvaTDlaSRGlDv~DiTHV~N--------yDFP~nIeeY----------VHRvGrtGRaGr~G~sis~lt~~D~~ 575 (629)
T KOG0336|consen 517 RILVATDLASRGLDVPDITHVYN--------YDFPRNIEEY----------VHRVGRTGRAGRTGTSISFLTRNDWS 575 (629)
T ss_pred EEEEEechhhcCCCchhcceeec--------cCCCccHHHH----------HHHhcccccCCCCcceEEEEehhhHH
Confidence 99999999999999999999999 9999998877 9999999999 789999999987764
No 47
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.96 E-value=1.2e-29 Score=282.95 Aligned_cols=322 Identities=20% Similarity=0.247 Sum_probs=219.5
Q ss_pred hhhhHHHHHHHHhhc-cEEEEecCCCCCCcCChhhhhhhcCC----------------cc--ccccCCceehhhhHHHHH
Q 001729 28 VMSLREKIVEKVLEN-RVTLIVGETGCGKSSQVPQFLLAENM----------------EP--ILCTQPRRFAVVAVAKMV 88 (1020)
Q Consensus 28 i~~~Q~eil~~i~~~-~~vII~apTGSGKTt~ip~~lle~~~----------------~~--IivtqPrrlaa~sva~rv 88 (1020)
.+++|...++++..+ .+++-.|+||||||.++-.++++... .+ -+|+.|+|.+|.|+.+.+
T Consensus 204 Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl 283 (731)
T KOG0347|consen 204 PTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQHL 283 (731)
T ss_pred CccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHHHHHH
Confidence 457888888888777 78999999999999888888776211 12 677889999999998766
Q ss_pred hh---ccccccCcccce-ec-cccccccccceEEeeechhhhHHHHHhcc---ccceeEEEEeecccccccccceeehh-
Q 001729 89 AK---GRNCELGGEVGY-HI-GHSKHLSERSKIVFKTAGVLLDEMRDRGL---NALKYKVIILDEVHERSVESDLVLVC- 159 (1020)
Q Consensus 89 a~---e~~~~lg~~Vgy-~i-~~~~~~~~~t~Iiv~Tpg~Ll~~l~~~~l---~l~~~s~IIIDEaHER~l~~d~ll~~- 159 (1020)
.. ..+..+...+|. .+ .++..++..++|+|+|||+|+.++..+.. .+.++.++||||++ |++.-+....+
T Consensus 284 ~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaD-RmvekghF~Els 362 (731)
T KOG0347|consen 284 KAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEAD-RMVEKGHFEELS 362 (731)
T ss_pred HHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHH-HHhhhccHHHHH
Confidence 43 333333333332 11 23444567899999999999999886543 23489999999999 88877654433
Q ss_pred --hhhHh--hccCCeEEEEeecccchhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccc
Q 001729 160 --VKQLL--LKKNDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSEL 235 (1020)
Q Consensus 160 --lk~ll--~~~~~lkiIlmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~ 235 (1020)
++.+. ..++..|.+++|||++.......-.... .......+... ++.....+++...
T Consensus 363 ~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k-----------~~~k~~~~~~k---iq~Lmk~ig~~~k----- 423 (731)
T KOG0347|consen 363 KLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRK-----------KKDKEDELNAK---IQHLMKKIGFRGK----- 423 (731)
T ss_pred HHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhh-----------ccchhhhhhHH---HHHHHHHhCccCC-----
Confidence 33333 2345679999999986443333221100 00000011111 1222222331110
Q ss_pred cccccCCCCCCcccccccChhHHHHHHHhh------------hhhccCCccccccEEEEecchhhHHHhhhhccccccce
Q 001729 236 SSLRYCSGPSPSMANAEIKPEVHKLIHDLV------------LHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFF 303 (1020)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~li~~ll------------~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~ 303 (1020)
+...+..........+.+.. +++... .+|++|||||+.+.+.++.-.|.. .++
T Consensus 424 ----------pkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~r---yPGrTlVF~NsId~vKRLt~~L~~--L~i 488 (731)
T KOG0347|consen 424 ----------PKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTR---YPGRTLVFCNSIDCVKRLTVLLNN--LDI 488 (731)
T ss_pred ----------CeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEee---cCCceEEEechHHHHHHHHHHHhh--cCC
Confidence 01111111111111111111 111122 258999999999999999999984 347
Q ss_pred EEEEeecccchHHHHHHHHhhhccc-eEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHh
Q 001729 304 KVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQR 382 (1020)
Q Consensus 304 ~v~~lHs~l~~~er~~i~~~f~~gr-kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR 382 (1020)
...+||+.|.+.+|.+.++.|+... -||||||+|++|+|||+|.+||+ |..|+..+-| +||
T Consensus 489 ~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIH--------YqVPrtseiY----------VHR 550 (731)
T KOG0347|consen 489 PPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIH--------YQVPRTSEIY----------VHR 550 (731)
T ss_pred CCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEE--------eecCCcccee----------Eec
Confidence 7899999999999999999999877 99999999999999999999999 9999988777 999
Q ss_pred cCCCCcc-cCCeeEEeechhh
Q 001729 383 RGRTGRT-CDGQVYRLVTKSF 402 (1020)
Q Consensus 383 ~GRAGR~-~~G~c~rLys~~~ 402 (1020)
.||+.|. ..|..+.|+.+.+
T Consensus 551 SGRTARA~~~Gvsvml~~P~e 571 (731)
T KOG0347|consen 551 SGRTARANSEGVSVMLCGPQE 571 (731)
T ss_pred ccccccccCCCeEEEEeChHH
Confidence 9999999 7899999998754
No 48
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=6.4e-29 Score=266.54 Aligned_cols=315 Identities=19% Similarity=0.245 Sum_probs=232.3
Q ss_pred hhhHHHHHHHHhhc--cEEEEecCCCCCCcCChhhhhhhcCC-----ccccccCCceehhhhHHHHHhhccccccCcccc
Q 001729 29 MSLREKIVEKVLEN--RVTLIVGETGCGKSSQVPQFLLAENM-----EPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (1020)
Q Consensus 29 ~~~Q~eil~~i~~~--~~vII~apTGSGKTt~ip~~lle~~~-----~~IivtqPrrlaa~sva~rva~e~~~~lg~~Vg 101 (1020)
+.+|+.+++.++.+ +++|..+..|+|||+++.+-++..-. ...+|+.|+|.+|.+.-+-+ +++|...+....
T Consensus 114 skIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~eVv-~eMGKf~~ita~ 192 (477)
T KOG0332|consen 114 SKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAPQTGEVV-EEMGKFTELTAS 192 (477)
T ss_pred chHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHHHHHHHHH-HHhcCceeeeEE
Confidence 46899999999865 89999999999999998888876432 36889999999999987755 567766667778
Q ss_pred eecccccccc---ccceEEeeechhhhHHHHH-hccccceeEEEEeeccccccccc-ceeehhhhhHhhccCCeEEEEee
Q 001729 102 YHIGHSKHLS---ERSKIVFKTAGVLLDEMRD-RGLNALKYKVIILDEVHERSVES-DLVLVCVKQLLLKKNDLRVVLMS 176 (1020)
Q Consensus 102 y~i~~~~~~~---~~t~Iiv~Tpg~Ll~~l~~-~~l~l~~~s~IIIDEaHER~l~~-d~ll~~lk~ll~~~~~lkiIlmS 176 (1020)
|.++...... -..+|+++|||.+++++.. +.+.+..+.++|+|||+ -++++ +|...-++......++.++|++|
T Consensus 193 yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD-~Mi~tqG~~D~S~rI~~~lP~~~QllLFS 271 (477)
T KOG0332|consen 193 YAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEAD-VMIDTQGFQDQSIRIMRSLPRNQQLLLFS 271 (477)
T ss_pred EEecCcccccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchh-hhhhcccccccchhhhhhcCCcceEEeee
Confidence 8888764332 2468999999999999886 55556699999999999 45555 35555556555566799999999
Q ss_pred cccchhhhhHHHhhcCC-cceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCcccccccCh
Q 001729 177 ATADITKYRDYFRDLGR-GERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKP 255 (1020)
Q Consensus 177 ATld~~~~~~~f~~~~~-~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (1020)
||.+ +....|-....+ ..++.+ ... .-..++++-+|+ ...-..
T Consensus 272 ATf~-e~V~~Fa~kivpn~n~i~L-k~e---el~L~~IkQlyv-------------------------------~C~~~~ 315 (477)
T KOG0332|consen 272 ATFV-EKVAAFALKIVPNANVIIL-KRE---ELALDNIKQLYV-------------------------------LCACRD 315 (477)
T ss_pred chhH-HHHHHHHHHhcCCCceeee-ehh---hccccchhhhee-------------------------------eccchh
Confidence 9975 333444333211 111111 111 011222222221 111222
Q ss_pred hHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc-eEEEEe
Q 001729 256 EVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILAT 334 (1020)
Q Consensus 256 ~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVLVAT 334 (1020)
+.++.+.++...+. -|+.+|||.++..+..++..+. ..|..|..+||+|..++|..+.+.|+.|+ ||||+|
T Consensus 316 ~K~~~l~~lyg~~t------igqsiIFc~tk~ta~~l~~~m~--~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitT 387 (477)
T KOG0332|consen 316 DKYQALVNLYGLLT------IGQSIIFCHTKATAMWLYEEMR--AEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITT 387 (477)
T ss_pred hHHHHHHHHHhhhh------hhheEEEEeehhhHHHHHHHHH--hcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEe
Confidence 33444444322211 2688999999999999999998 45688999999999999999999999999 999999
Q ss_pred ccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc-cCCeeEEeechh
Q 001729 335 NIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKS 401 (1020)
Q Consensus 335 niae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c~rLys~~ 401 (1020)
|+.++|||++.|++||+ ||.|.....- -..+.|+||+||+||. +.|.+|.|+...
T Consensus 388 nV~ARGiDv~qVs~VvN--------ydlP~~~~~~----pD~etYlHRiGRtGRFGkkG~a~n~v~~~ 443 (477)
T KOG0332|consen 388 NVCARGIDVAQVSVVVN--------YDLPVKYTGE----PDYETYLHRIGRTGRFGKKGLAINLVDDK 443 (477)
T ss_pred chhhcccccceEEEEEe--------cCCccccCCC----CCHHHHHHHhcccccccccceEEEeeccc
Confidence 99999999999999999 9988654432 3457789999999999 689999987653
No 49
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=8e-30 Score=283.54 Aligned_cols=344 Identities=21% Similarity=0.263 Sum_probs=223.6
Q ss_pred chhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcCCc-----------cccccCCceehhhhHHHHHhhccccc
Q 001729 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENME-----------PILCTQPRRFAVVAVAKMVAKGRNCE 95 (1020)
Q Consensus 27 Pi~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~~~-----------~IivtqPrrlaa~sva~rva~e~~~~ 95 (1020)
..+.+|.++|+.++++++++|.++||||||.++..++.+...+ -.+|+.|+|.+|.|+++-+.+.....
T Consensus 159 ~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~ 238 (708)
T KOG0348|consen 159 APTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLKPF 238 (708)
T ss_pred ccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhcCc
Confidence 4567999999999999999999999999998888887654321 36778899999999999888766543
Q ss_pred cCcccceeccccccc------cccceEEeeechhhhHHHHH-hccccceeEEEEeecccccccccceeehhhhhHhhc--
Q 001729 96 LGGEVGYHIGHSKHL------SERSKIVFKTAGVLLDEMRD-RGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLK-- 166 (1020)
Q Consensus 96 lg~~Vgy~i~~~~~~------~~~t~Iiv~Tpg~Ll~~l~~-~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~-- 166 (1020)
--..-|+.++++++. ..+.+|+++|||+|++.+.+ ..+.+.++.+||+||++ |.++.+|-..+-.++...
T Consensus 239 hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaD-rlleLGfekdit~Il~~v~~ 317 (708)
T KOG0348|consen 239 HWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEAD-RLLELGFEKDITQILKAVHS 317 (708)
T ss_pred eEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchh-HHHhccchhhHHHHHHHHhh
Confidence 333446667777654 35679999999999999885 34556689999999999 888887765543322211
Q ss_pred -----------cCCeEEEEeecccchhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHH-hc--CCcccc
Q 001729 167 -----------KNDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTEL-LG--VDHGMT 232 (1020)
Q Consensus 167 -----------~~~lkiIlmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~-l~--~~~~~~ 232 (1020)
.+.++-+++|||+.. .+.+.-+ +...+++-+- ..... ....| +..-++++... .+ .+...-
T Consensus 318 ~~~~e~~~~~lp~q~q~mLlSATLtd-~V~rLa~-~sLkDpv~I~-ld~s~-~~~~p-~~~a~~ev~~~~~~~~l~~~~i 392 (708)
T KOG0348|consen 318 IQNAECKDPKLPHQLQNMLLSATLTD-GVNRLAD-LSLKDPVYIS-LDKSH-SQLNP-KDKAVQEVDDGPAGDKLDSFAI 392 (708)
T ss_pred ccchhcccccccHHHHhHhhhhhhHH-HHHHHhh-ccccCceeee-ccchh-hhcCc-chhhhhhcCCcccccccccccC
Confidence 123678899999852 2222221 1222333332 11000 00000 00000000000 00 000001
Q ss_pred ccccccccCCCCCCcccccccChhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccc--------------
Q 001729 233 SELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKP-------------- 298 (1020)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~-------------- 298 (1020)
++.+..+|...+. +-.... +..++....+.++. .+++||+.+.+.++.-++.+..
T Consensus 393 PeqL~qry~vVPp--------KLRLV~-Laa~L~~~~k~~~~--qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~ 461 (708)
T KOG0348|consen 393 PEQLLQRYTVVPP--------KLRLVA-LAALLLNKVKFEEK--QKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPD 461 (708)
T ss_pred cHHhhhceEecCC--------chhHHH-HHHHHHHHhhhhhh--ceeEEEEechhHHHHHHHHHHhhhhcccccccCCcc
Confidence 1111222221111 001111 22344444444442 4899999999999876665531
Q ss_pred ------cccceEEEEeecccchHHHHHHHHhhhccc-eEEEEeccccccccccceeEEeecccceeeeeeccccccceee
Q 001729 299 ------LSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAEL 371 (1020)
Q Consensus 299 ------~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~ 371 (1020)
...+.+++-|||+|.+++|..+++.|...+ -|++|||+|++|+|+|+|++||. ||+|.
T Consensus 462 s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQ--------Yd~P~------- 526 (708)
T KOG0348|consen 462 SEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQ--------YDPPF------- 526 (708)
T ss_pred cCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEE--------eCCCC-------
Confidence 112467899999999999999999998877 99999999999999999999999 99998
Q ss_pred EEeehhHHHHhcCCCCcc-cCCeeEEeec--hhhccc
Q 001729 372 VWVSQSQAEQRRGRTGRT-CDGQVYRLVT--KSFFGT 405 (1020)
Q Consensus 372 ~~iSkas~~QR~GRAGR~-~~G~c~rLys--~~~~~~ 405 (1020)
|.++|+||+||+.|. +.|....+.. +.+|..
T Consensus 527 ---s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~ 560 (708)
T KOG0348|consen 527 ---STADYLHRVGRTARAGEKGEALLFLLPSEAEYVN 560 (708)
T ss_pred ---CHHHHHHHhhhhhhccCCCceEEEecccHHHHHH
Confidence 667779999999998 5677665554 445543
No 50
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.96 E-value=1.3e-28 Score=275.34 Aligned_cols=355 Identities=20% Similarity=0.284 Sum_probs=236.7
Q ss_pred cccCcchhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhc---CCccccccCCceehhhhHHHHHhhccccccCc
Q 001729 22 EFSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE---NMEPILCTQPRRFAVVAVAKMVAKGRNCELGG 98 (1020)
Q Consensus 22 ~r~~LPi~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~---~~~~IivtqPrrlaa~sva~rva~e~~~~lg~ 98 (1020)
....+-.+.||..+....+.+ +++|+.|||-|||+.....+... ..++++++.|++-++.|.++...+.++.+-..
T Consensus 10 ~p~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~ 88 (542)
T COG1111 10 KPNTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDE 88 (542)
T ss_pred ccccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhh
Confidence 344577788999999888774 99999999999997655554422 22379999999999999999999988865444
Q ss_pred cccee--ccccc--cccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhccCCeEEEE
Q 001729 99 EVGYH--IGHSK--HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVL 174 (1020)
Q Consensus 99 ~Vgy~--i~~~~--~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIl 174 (1020)
.+... ++-+. ......+|+|+||+++.+-+..+.+++.++++||+|||| |....-....+.+..+....+..|++
T Consensus 89 i~~ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAH-RAvGnyAYv~Va~~y~~~~k~~~ilg 167 (542)
T COG1111 89 IAALTGEVRPEEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAH-RAVGNYAYVFVAKEYLRSAKNPLILG 167 (542)
T ss_pred eeeecCCCChHHHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhh-hccCcchHHHHHHHHHHhccCceEEE
Confidence 33222 12221 224578999999999999999888888899999999999 88776666666777888888899999
Q ss_pred eeccc--chhhhhHHHhhcCCcc------------------eEEEEEecCCCchhhHHHhhhHHHH----H---HHHhcC
Q 001729 175 MSATA--DITKYRDYFRDLGRGE------------------RVEVLAIPSTNQRTIFQRRVSYLEQ----V---TELLGV 227 (1020)
Q Consensus 175 mSATl--d~~~~~~~f~~~~~~~------------------~v~v~~~p~~~~~~~~~v~v~yl~~----~---~~~l~~ 227 (1020)
||||+ +.+++.+...+++-.. .++.+.++.+.. .-.+. ..+.+ . ...+++
T Consensus 168 LTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e--~~~ir-~~l~~~l~~~Lk~L~~~g~ 244 (542)
T COG1111 168 LTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEE--IKEIR-DLLRDALKPRLKPLKELGV 244 (542)
T ss_pred EecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHH--HHHHH-HHHHHHHHHHHHHHHHcCc
Confidence 99997 7788888888774211 112222211100 00000 00000 0 000000
Q ss_pred Cccccc----ccc--------------------------------------------ccccCC------CCCCc------
Q 001729 228 DHGMTS----ELS--------------------------------------------SLRYCS------GPSPS------ 247 (1020)
Q Consensus 228 ~~~~~~----~~~--------------------------------------------~~~~~~------~~~~~------ 247 (1020)
..+... +.. ..+|.. .....
T Consensus 245 ~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l 324 (542)
T COG1111 245 IESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSL 324 (542)
T ss_pred eeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHH
Confidence 000000 000 000000 00000
Q ss_pred ccccccC---------------hhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEe----
Q 001729 248 MANAEIK---------------PEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHIL---- 308 (1020)
Q Consensus 248 ~~~~~~~---------------~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~l---- 308 (1020)
..+.... -...+.+.+++....+..+ ..+++||+.-++.++.+...|...+....+.++
T Consensus 325 ~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~--~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~ 402 (542)
T COG1111 325 LADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNG--DSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQAS 402 (542)
T ss_pred hcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCC--CceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccc
Confidence 0000000 0011222233333332222 369999999999999999999876654442222
Q ss_pred ---ecccchHHHHHHHHhhhccc-eEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcC
Q 001729 309 ---HSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRG 384 (1020)
Q Consensus 309 ---Hs~l~~~er~~i~~~f~~gr-kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~G 384 (1020)
..||++.+|.++++.|+.|. +|||||+|+|.|+|||++++||. |++-. |.--.+||.|
T Consensus 403 r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVif--------YEpvp----------SeIR~IQR~G 464 (542)
T COG1111 403 REGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIF--------YEPVP----------SEIRSIQRKG 464 (542)
T ss_pred cccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEE--------ecCCc----------HHHHHHHhhC
Confidence 24799999999999999999 99999999999999999999998 99876 4445599999
Q ss_pred CCCcccCCeeEEeechh
Q 001729 385 RTGRTCDGQVYRLVTKS 401 (1020)
Q Consensus 385 RAGR~~~G~c~rLys~~ 401 (1020)
|+||.++|.+|.|+++.
T Consensus 465 RTGR~r~Grv~vLvt~g 481 (542)
T COG1111 465 RTGRKRKGRVVVLVTEG 481 (542)
T ss_pred ccccCCCCeEEEEEecC
Confidence 99999999999999976
No 51
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.96 E-value=2.9e-29 Score=280.73 Aligned_cols=418 Identities=18% Similarity=0.171 Sum_probs=274.5
Q ss_pred hhhhHHHHHHH-HhhccEEEEecCCCCCCcCChhhh----hhhcCCccccccCCceehhhhHHHHHhhccccccCcccce
Q 001729 28 VMSLREKIVEK-VLENRVTLIVGETGCGKSSQVPQF----LLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (1020)
Q Consensus 28 i~~~Q~eil~~-i~~~~~vII~apTGSGKTt~ip~~----lle~~~~~IivtqPrrlaa~sva~rva~e~~~~lg~~Vgy 102 (1020)
+.|+|.-++++ ++++++.+|+.+|+||||..--.. ++. +.++.+++.|...+|.|-.+.+.+.. ..+|..|..
T Consensus 217 LlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~-~g~KmlfLvPLVALANQKy~dF~~rY-s~Lglkvai 294 (830)
T COG1202 217 LLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS-GGKKMLFLVPLVALANQKYEDFKERY-SKLGLKVAI 294 (830)
T ss_pred ecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh-CCCeEEEEehhHHhhcchHHHHHHHh-hcccceEEE
Confidence 44668777777 578999999999999999542222 222 23577888898888888888776654 355554444
Q ss_pred ecccc----------ccccccceEEeeechhhhHHHHHhccccceeEEEEeeccc-----ccccccceeehhhhhHhhcc
Q 001729 103 HIGHS----------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVH-----ERSVESDLVLVCVKQLLLKK 167 (1020)
Q Consensus 103 ~i~~~----------~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaH-----ER~l~~d~ll~~lk~ll~~~ 167 (1020)
.++.. -..+.+++|+|+|.+=+-..++.+. .+.+++.|||||+| ||+. -+.+++.++....
T Consensus 295 rVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~-~lgdiGtVVIDEiHtL~deERG~---RLdGLI~RLr~l~ 370 (830)
T COG1202 295 RVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGK-DLGDIGTVVIDEIHTLEDEERGP---RLDGLIGRLRYLF 370 (830)
T ss_pred EechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCC-cccccceEEeeeeeeccchhccc---chhhHHHHHHHhC
Confidence 43321 1235688999999998877777652 45699999999999 2333 3456677777778
Q ss_pred CCeEEEEeeccc-chhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCC
Q 001729 168 NDLRVVLMSATA-DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSP 246 (1020)
Q Consensus 168 ~~lkiIlmSATl-d~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 246 (1020)
++.|+|.+|||+ |++.++..++. ..|.....|. |.+-+.
T Consensus 371 ~~AQ~i~LSATVgNp~elA~~l~a----~lV~y~~RPV-------plErHl----------------------------- 410 (830)
T COG1202 371 PGAQFIYLSATVGNPEELAKKLGA----KLVLYDERPV-------PLERHL----------------------------- 410 (830)
T ss_pred CCCeEEEEEeecCChHHHHHHhCC----eeEeecCCCC-------ChhHee-----------------------------
Confidence 899999999998 99999999874 1222111111 111000
Q ss_pred cccccccChhHHHHHHHhhhhhccC--CccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhh
Q 001729 247 SMANAEIKPEVHKLIHDLVLHIHKN--ESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC 324 (1020)
Q Consensus 247 ~~~~~~~~~~~~~li~~ll~~i~~~--~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f 324 (1020)
.......+..+++..++..-..+ .....|++|||.+++..++.++..|. ..++++.++|+||+..+|+.++..|
T Consensus 411 --vf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~--~kG~~a~pYHaGL~y~eRk~vE~~F 486 (830)
T COG1202 411 --VFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALT--GKGLKAAPYHAGLPYKERKSVERAF 486 (830)
T ss_pred --eeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhh--cCCcccccccCCCcHHHHHHHHHHH
Confidence 00000112223333333222221 12235899999999999999999998 4579999999999999999999999
Q ss_pred hccc-eEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc---cCCeeEEeech
Q 001729 325 KSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT---CDGQVYRLVTK 400 (1020)
Q Consensus 325 ~~gr-kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~---~~G~c~rLys~ 400 (1020)
..+. .+||+|..++.|+|+|.-.+|.. . -.+-..|+|..++.||.|||||. ..|++|.|..+
T Consensus 487 ~~q~l~~VVTTAAL~AGVDFPASQVIFE----------s----LaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvep 552 (830)
T COG1202 487 AAQELAAVVTTAALAAGVDFPASQVIFE----------S----LAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEP 552 (830)
T ss_pred hcCCcceEeehhhhhcCCCCchHHHHHH----------H----HHcccccCCHHHHHHHhcccCCCCcccCceEEEEecC
Confidence 9998 99999999999999997665553 1 12345799999999999999999 57999999876
Q ss_pred h-hccc-cccc----------CCcceehh-----hHhHHHHHhhccCccccCChhHHHhhhcCCCCccchhhHHHHHHHH
Q 001729 401 S-FFGT-LEDH----------ECPAILRL-----SLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHK 463 (1020)
Q Consensus 401 ~-~~~~-l~~~----------~~PEI~r~-----~L~~~vL~l~~~~~~~l~~~~~~l~~~ldpP~~~~i~~al~~L~~l 463 (1020)
. .|.. |.+. ..||-.-. .-.+.+|.-.+.. ++.+.........+- ..-..+.++..|.+.
T Consensus 553 g~~Y~~~m~~TEdevA~kLL~s~~e~V~vey~ee~e~e~vLA~~~v~-~s~~~i~~v~~~~~g--~~~~~~k~l~~Lee~ 629 (830)
T COG1202 553 GKKYHASMEETEDEVAFKLLESEPEPVIVEYDEEDEEENVLASAGVT-NSLSVIERVNSLMLG--AAFDPKKALSKLEEY 629 (830)
T ss_pred ChhhcccccccHHHHHHHHhcCCCCcceeccCcHHHHHHHHHHhhhc-CcHHHHhhcChhhcc--ccCCHHHHHHHHHhc
Confidence 3 4432 3221 11221111 1112233321111 112211111111111 112357889999999
Q ss_pred hhhhhcCCCCc-cCccccchhccccccccceeEEEEEeccchhhhhhhhhhhhcc
Q 001729 464 RALQKISPRGR-YEPTFYGRLLASFSLSFDASVLVLKFGEIGMLREGILLGILMD 517 (1020)
Q Consensus 464 gald~~~~~g~-~~lT~lG~~~a~lpldp~~a~~ll~~~~~gc~~e~l~Iaa~ls 517 (1020)
|.|+.+ |+ .++|+.|++++..-+.|.-|-.|..+. .-..+.+-|++.|.
T Consensus 630 g~i~~~---G~~v~~T~yGrava~~Fl~p~~a~~Ir~~v--~~~~~pl~i~~~l~ 679 (830)
T COG1202 630 GMIKKK---GNIVRPTPYGRAVAMSFLGPSEAEFIREGV--LASMDPLRIAAELE 679 (830)
T ss_pred CCeecc---CCEeeeccccceeEEeecCchHHHHHHHhh--hccCChHhHhhccc
Confidence 999874 54 689999999999999888765543332 12234566666664
No 52
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.95 E-value=4.9e-28 Score=301.91 Aligned_cols=300 Identities=15% Similarity=0.176 Sum_probs=204.8
Q ss_pred chhhhHHHHHHHHhhc------cEEEEecCCCCCCcCChhhhhhhc--CCccccccCCceehhhhHHHHHhhccccccCc
Q 001729 27 PVMSLREKIVEKVLEN------RVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPRRFAVVAVAKMVAKGRNCELGG 98 (1020)
Q Consensus 27 Pi~~~Q~eil~~i~~~------~~vII~apTGSGKTt~ip~~lle~--~~~~IivtqPrrlaa~sva~rva~e~~~~lg~ 98 (1020)
..++.|.++++.+.++ .+.+++|+||||||.++...++.. ...+++++.|++.+|.|.++.+.+.+.. .+.
T Consensus 451 ~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~-~~i 529 (926)
T TIGR00580 451 EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFAN-FPV 529 (926)
T ss_pred CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhcc-CCc
Confidence 3589999999999875 689999999999997665555432 2257899999999999999988765431 222
Q ss_pred ccceeccccc----------cccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhccC
Q 001729 99 EVGYHIGHSK----------HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKN 168 (1020)
Q Consensus 99 ~Vgy~i~~~~----------~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~ 168 (1020)
.++...++.. ......+|+|+||..+ .+.+.+.++++|||||+|. |.......+....+
T Consensus 530 ~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVIDEahr------fgv~~~~~L~~~~~ 598 (926)
T TIGR00580 530 TIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIIDEEQR------FGVKQKEKLKELRT 598 (926)
T ss_pred EEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEeecccc------cchhHHHHHHhcCC
Confidence 2322212111 1123589999999543 2334556899999999994 22222333444456
Q ss_pred CeEEEEeecccchhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCcc
Q 001729 169 DLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSM 248 (1020)
Q Consensus 169 ~lkiIlmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 248 (1020)
+.++++||||+.+..+....... ....++..+... + .++..++
T Consensus 599 ~~~vL~~SATpiprtl~~~l~g~---~d~s~I~~~p~~--R-~~V~t~v------------------------------- 641 (926)
T TIGR00580 599 SVDVLTLSATPIPRTLHMSMSGI---RDLSIIATPPED--R-LPVRTFV------------------------------- 641 (926)
T ss_pred CCCEEEEecCCCHHHHHHHHhcC---CCcEEEecCCCC--c-cceEEEE-------------------------------
Confidence 78999999998666554433221 112222222110 0 1111000
Q ss_pred cccccChhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc
Q 001729 249 ANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR 328 (1020)
Q Consensus 249 ~~~~~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr 328 (1020)
.. .......+.+ ...+.. +++++||+|+.++++.+++.|....+++.+..+||+|+.++|..+++.|++|+
T Consensus 642 ~~-~~~~~i~~~i---~~el~~-----g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk 712 (926)
T TIGR00580 642 ME-YDPELVREAI---RRELLR-----GGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGE 712 (926)
T ss_pred Ee-cCHHHHHHHH---HHHHHc-----CCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCC
Confidence 00 0000111111 112211 36899999999999999999987656789999999999999999999999999
Q ss_pred -eEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc-cCCeeEEeechh
Q 001729 329 -KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKS 401 (1020)
Q Consensus 329 -kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c~rLys~~ 401 (1020)
+|||||+++|+|||+|++++||. +|.+.. +-+++.||+||+||. +.|.||.++++.
T Consensus 713 ~~ILVaT~iie~GIDIp~v~~VIi--------~~a~~~---------gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 713 FQVLVCTTIIETGIDIPNANTIII--------ERADKF---------GLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred CCEEEECChhhcccccccCCEEEE--------ecCCCC---------CHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 99999999999999999999997 666431 234669999999999 689999999753
No 53
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.95 E-value=5.2e-28 Score=292.05 Aligned_cols=313 Identities=19% Similarity=0.241 Sum_probs=215.3
Q ss_pred hhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhh----cC--C----ccccccCCceehhhhHHHHHhh---cccc
Q 001729 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLA----EN--M----EPILCTQPRRFAVVAVAKMVAK---GRNC 94 (1020)
Q Consensus 28 i~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle----~~--~----~~IivtqPrrlaa~sva~rva~---e~~~ 94 (1020)
+++.|.++++.+.+|++++|+||||||||.+..+++++ .+ . -.++++.|-+.++..+-.++.. ++|.
T Consensus 23 ~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~~G~ 102 (814)
T COG1201 23 LTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEPLRELGI 102 (814)
T ss_pred CCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHHHHHcCC
Confidence 57889999999999999999999999999666555543 32 1 1577888999999888777644 3444
Q ss_pred ccCcccceecccc--ccccccceEEeeechhhhHHHHHhcc--ccceeEEEEeeccccccccc-ceeeh-hhhhHhhccC
Q 001729 95 ELGGEVGYHIGHS--KHLSERSKIVFKTAGVLLDEMRDRGL--NALKYKVIILDEVHERSVES-DLVLV-CVKQLLLKKN 168 (1020)
Q Consensus 95 ~lg~~Vgy~i~~~--~~~~~~t~Iiv~Tpg~Ll~~l~~~~l--~l~~~s~IIIDEaHER~l~~-d~ll~-~lk~ll~~~~ 168 (1020)
++....|.....+ ......++|+++|||.|.-.+....+ .+.++.+|||||+|+-..+- +..+. -+.++...-+
T Consensus 103 ~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~ 182 (814)
T COG1201 103 EVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLALSLERLRELAG 182 (814)
T ss_pred ccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchhhhhhHHHHHhhCc
Confidence 4322222221111 22356789999999999777654321 23499999999999622111 12222 2344444444
Q ss_pred CeEEEEeeccc-chhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCc
Q 001729 169 DLRVVLMSATA-DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPS 247 (1020)
Q Consensus 169 ~lkiIlmSATl-d~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 247 (1020)
++|.|++|||. +++...+|+...+ .+++++.++.... ..+++.. +..+
T Consensus 183 ~~qRIGLSATV~~~~~varfL~g~~--~~~~Iv~~~~~k~---~~i~v~~--------------------------p~~~ 231 (814)
T COG1201 183 DFQRIGLSATVGPPEEVAKFLVGFG--DPCEIVDVSAAKK---LEIKVIS--------------------------PVED 231 (814)
T ss_pred ccEEEeehhccCCHHHHHHHhcCCC--CceEEEEcccCCc---ceEEEEe--------------------------cCCc
Confidence 89999999998 8899999997532 2667766654321 1111100 0000
Q ss_pred ccc-cccChhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhc
Q 001729 248 MAN-AEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKS 326 (1020)
Q Consensus 248 ~~~-~~~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~ 326 (1020)
... ........+.+.+++ +. .+.+|||+||+..+|.++..|..... ..+..+||+++.++|..+++.|++
T Consensus 232 ~~~~~~~~~~~~~~i~~~v----~~----~~ttLIF~NTR~~aE~l~~~L~~~~~-~~i~~HHgSlSre~R~~vE~~lk~ 302 (814)
T COG1201 232 LIYDEELWAALYERIAELV----KK----HRTTLIFTNTRSGAERLAFRLKKLGP-DIIEVHHGSLSRELRLEVEERLKE 302 (814)
T ss_pred cccccchhHHHHHHHHHHH----hh----cCcEEEEEeChHHHHHHHHHHHHhcC-CceeeecccccHHHHHHHHHHHhc
Confidence 000 111112223333332 22 24899999999999999999986543 678999999999999999999999
Q ss_pred cc-eEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc----cCCeeEEee
Q 001729 327 HR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT----CDGQVYRLV 398 (1020)
Q Consensus 327 gr-kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~----~~G~c~rLy 398 (1020)
|. +++|||+.+|-||||.+|+.||+ |..|..+..+ .||+||+|+. ..|..|...
T Consensus 303 G~lravV~TSSLELGIDiG~vdlVIq--------~~SP~sV~r~----------lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 303 GELKAVVATSSLELGIDIGDIDLVIQ--------LGSPKSVNRF----------LQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred CCceEEEEccchhhccccCCceEEEE--------eCCcHHHHHH----------hHhccccccccCCcccEEEEecC
Confidence 99 99999999999999999999999 8888866555 9999999987 345544443
No 54
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=1.6e-28 Score=258.19 Aligned_cols=311 Identities=17% Similarity=0.219 Sum_probs=222.8
Q ss_pred hhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcCCc-----cccccCCceehhhhH---HHHHhhccccccCcc
Q 001729 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENME-----PILCTQPRRFAVVAV---AKMVAKGRNCELGGE 99 (1020)
Q Consensus 28 i~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~~~-----~IivtqPrrlaa~sv---a~rva~e~~~~lg~~ 99 (1020)
.+|+|++.++..+.+++++.-|..|+|||.++..++++.... ..+|+.|+|.+|.|. ..++++.++..+-..
T Consensus 108 PSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvt 187 (459)
T KOG0326|consen 108 PSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHLGIKVMVT 187 (459)
T ss_pred CCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEe
Confidence 357899999999999999999999999998888888876432 345666777777655 455566666554444
Q ss_pred cceeccccc--cccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhccCCeEEEEeec
Q 001729 100 VGYHIGHSK--HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSA 177 (1020)
Q Consensus 100 Vgy~i~~~~--~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmSA 177 (1020)
+|-..-.++ ++....+++|+|||++++++..+--.+.+..++|+|||+ ..+..||...+-+.+....++.|+++.||
T Consensus 188 tGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEAD-KlLs~~F~~~~e~li~~lP~~rQillySA 266 (459)
T KOG0326|consen 188 TGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEAD-KLLSVDFQPIVEKLISFLPKERQILLYSA 266 (459)
T ss_pred cCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhh-hhhchhhhhHHHHHHHhCCccceeeEEec
Confidence 443322222 335678999999999999988776566799999999999 78888998887777777788999999999
Q ss_pred ccchhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCcccccccChhH
Q 001729 178 TADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEV 257 (1020)
Q Consensus 178 Tld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (1020)
|.+.. ...|.+.. ...|.++--... -....+.-+| ........
T Consensus 267 TFP~t-Vk~Fm~~~-l~kPy~INLM~e---Ltl~GvtQyY-------------------------------afV~e~qK- 309 (459)
T KOG0326|consen 267 TFPLT-VKGFMDRH-LKKPYEINLMEE---LTLKGVTQYY-------------------------------AFVEERQK- 309 (459)
T ss_pred ccchh-HHHHHHHh-ccCcceeehhhh---hhhcchhhhe-------------------------------eeechhhh-
Confidence 96422 22222210 001111100000 0000000000 00000001
Q ss_pred HHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc-eEEEEecc
Q 001729 258 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNI 336 (1020)
Q Consensus 258 ~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVLVATni 336 (1020)
...+..+...+.- ...+|||++...+|-++..+..+ ++.++.+|+.|.++.|.+++..|++|. +.+|||+.
T Consensus 310 vhCLntLfskLqI------NQsIIFCNS~~rVELLAkKITel--GyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL 381 (459)
T KOG0326|consen 310 VHCLNTLFSKLQI------NQSIIFCNSTNRVELLAKKITEL--GYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDL 381 (459)
T ss_pred hhhHHHHHHHhcc------cceEEEeccchHhHHHHHHHHhc--cchhhHHHHHHHHhhhhhhhhhhhccccceeeehhh
Confidence 1111222222221 36799999999999999998844 588999999999999999999999999 99999999
Q ss_pred ccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc-cCCeeEEeechhh
Q 001729 337 AESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSF 402 (1020)
Q Consensus 337 ae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c~rLys~~~ 402 (1020)
+.+||||++|++||+ ||.+...++| .||+||+||. ..|.++.|++-++
T Consensus 382 ~TRGIDiqavNvVIN--------FDfpk~aEtY----------LHRIGRsGRFGhlGlAInLityed 430 (459)
T KOG0326|consen 382 FTRGIDIQAVNVVIN--------FDFPKNAETY----------LHRIGRSGRFGHLGLAINLITYED 430 (459)
T ss_pred hhcccccceeeEEEe--------cCCCCCHHHH----------HHHccCCccCCCcceEEEEEehhh
Confidence 999999999999999 9999966665 9999999999 6899999998543
No 55
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.95 E-value=1.4e-27 Score=293.93 Aligned_cols=300 Identities=20% Similarity=0.224 Sum_probs=198.8
Q ss_pred cchhhhHHHHHHHHhhc------cEEEEecCCCCCCcCChhhhhhhc--CCccccccCCceehhhhHHHHHhhccccccC
Q 001729 26 LPVMSLREKIVEKVLEN------RVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (1020)
Q Consensus 26 LPi~~~Q~eil~~i~~~------~~vII~apTGSGKTt~ip~~lle~--~~~~IivtqPrrlaa~sva~rva~e~~~~lg 97 (1020)
..+++.|.++++.+.++ .+++++|+||||||.++...++.. ...+++++.|++++|.|+++.+.+.+. .+|
T Consensus 260 f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~-~~~ 338 (681)
T PRK10917 260 FELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLE-PLG 338 (681)
T ss_pred CCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHh-hcC
Confidence 34899999999999876 389999999999997766665543 223688889999999999998876542 233
Q ss_pred cccceeccccc----------cccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhcc
Q 001729 98 GEVGYHIGHSK----------HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKK 167 (1020)
Q Consensus 98 ~~Vgy~i~~~~----------~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~ 167 (1020)
..|+...+... ......+|+|+|++.+.. .+.+.++++|||||+|.-. ......+....
T Consensus 339 i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hrfg------~~qr~~l~~~~ 407 (681)
T PRK10917 339 IRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHRFG------VEQRLALREKG 407 (681)
T ss_pred cEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhhhh------HHHHHHHHhcC
Confidence 34444433322 123468999999987743 2234589999999999421 11122233334
Q ss_pred CCeEEEEeecccchhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCc
Q 001729 168 NDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPS 247 (1020)
Q Consensus 168 ~~lkiIlmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 247 (1020)
...++++||||+.+..+...+. +......+...|.... ++... +
T Consensus 408 ~~~~iL~~SATp~prtl~~~~~--g~~~~s~i~~~p~~r~----~i~~~-----------------------~------- 451 (681)
T PRK10917 408 ENPHVLVMTATPIPRTLAMTAY--GDLDVSVIDELPPGRK----PITTV-----------------------V------- 451 (681)
T ss_pred CCCCEEEEeCCCCHHHHHHHHc--CCCceEEEecCCCCCC----CcEEE-----------------------E-------
Confidence 4678999999986554432221 1111111111111000 00000 0
Q ss_pred ccccccChhHHHHHHHhhhhhccCCccccccEEEEecchh--------hHHHhhhhccccccceEEEEeecccchHHHHH
Q 001729 248 MANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYY--------ALEQQWHLMKPLSSFFKVHILHSSVDTEQALM 319 (1020)
Q Consensus 248 ~~~~~~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~--------~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~ 319 (1020)
..........+.+.+. + . .+++++||||..+ .++.+++.|.....++.+..+||+|+.++|..
T Consensus 452 -~~~~~~~~~~~~i~~~---~-~----~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~ 522 (681)
T PRK10917 452 -IPDSRRDEVYERIREE---I-A----KGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDA 522 (681)
T ss_pred -eCcccHHHHHHHHHHH---H-H----cCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHH
Confidence 0000011122222222 2 1 1368999999654 34556666665444578999999999999999
Q ss_pred HHHhhhccc-eEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc-cCCeeEEe
Q 001729 320 AMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRL 397 (1020)
Q Consensus 320 i~~~f~~gr-kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c~rL 397 (1020)
+++.|++|+ +|||||+++|+|||+|++++||. ||.++- +-+++.||+||+||. .+|.||.+
T Consensus 523 i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi--------~~~~r~---------gls~lhQ~~GRvGR~g~~g~~ill 585 (681)
T PRK10917 523 VMAAFKAGEIDILVATTVIEVGVDVPNATVMVI--------ENAERF---------GLAQLHQLRGRVGRGAAQSYCVLL 585 (681)
T ss_pred HHHHHHcCCCCEEEECcceeeCcccCCCcEEEE--------eCCCCC---------CHHHHHHHhhcccCCCCceEEEEE
Confidence 999999998 99999999999999999999998 777641 235679999999999 68999999
Q ss_pred ec
Q 001729 398 VT 399 (1020)
Q Consensus 398 ys 399 (1020)
++
T Consensus 586 ~~ 587 (681)
T PRK10917 586 YK 587 (681)
T ss_pred EC
Confidence 86
No 56
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.95 E-value=3e-27 Score=278.80 Aligned_cols=352 Identities=17% Similarity=0.232 Sum_probs=216.0
Q ss_pred ccCcchhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcC----CccccccCCceehhhhHHHHHhhccccccCc
Q 001729 23 FSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN----MEPILCTQPRRFAVVAVAKMVAKGRNCELGG 98 (1020)
Q Consensus 23 r~~LPi~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~----~~~IivtqPrrlaa~sva~rva~e~~~~lg~ 98 (1020)
..+++++.||.+++...+ ++++||++|||+|||......+++.- .++||++.|++.+..|........ +..- .
T Consensus 58 p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~-~~~~-~ 134 (746)
T KOG0354|consen 58 PTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIY-LIPY-S 134 (746)
T ss_pred cCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhc-cCcc-c
Confidence 356999999999999999 99999999999999987777776543 258999999998876665544432 2111 1
Q ss_pred ccceecccc------ccccccceEEeeechhhhHHHHHhccc-cceeEEEEeecccccccccceeehhhhhHhhccCCe-
Q 001729 99 EVGYHIGHS------KHLSERSKIVFKTAGVLLDEMRDRGLN-ALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDL- 170 (1020)
Q Consensus 99 ~Vgy~i~~~------~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~-l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~l- 170 (1020)
..|.. +.. .......+|+|+||++|.+.|.+.... +..++++|||||| |+......-.+++.++......
T Consensus 135 ~T~~l-~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~H-ra~kn~~Y~~Vmr~~l~~k~~~~ 212 (746)
T KOG0354|consen 135 VTGQL-GDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECH-RTSKNHPYNNIMREYLDLKNQGN 212 (746)
T ss_pred ceeec-cCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccc-cccccccHHHHHHHHHHhhhccc
Confidence 11111 110 012346899999999999988765433 3589999999999 7766666666666666554333
Q ss_pred EEEEeeccc--chhhhhHHHhhcCCcceEEE--------------EEecCC-------CchhhHHHhhhHHHHHHHHhcC
Q 001729 171 RVVLMSATA--DITKYRDYFRDLGRGERVEV--------------LAIPST-------NQRTIFQRRVSYLEQVTELLGV 227 (1020)
Q Consensus 171 kiIlmSATl--d~~~~~~~f~~~~~~~~v~v--------------~~~p~~-------~~~~~~~v~v~yl~~~~~~l~~ 227 (1020)
|||++|||+ +.+...++...+--.-.+.. ..+|.. ..++....-..|+.+... .+.
T Consensus 213 qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~-~~l 291 (746)
T KOG0354|consen 213 QILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQE-EGL 291 (746)
T ss_pred cEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHh-cCc
Confidence 999999998 55566666655411100000 000000 001111111112211110 000
Q ss_pred ---C-cc-cccc-c------------cccc----------------------------cCCCCCCc--------------
Q 001729 228 ---D-HG-MTSE-L------------SSLR----------------------------YCSGPSPS-------------- 247 (1020)
Q Consensus 228 ---~-~~-~~~~-~------------~~~~----------------------------~~~~~~~~-------------- 247 (1020)
. .. .... . ...+ +.....+.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~ 371 (746)
T KOG0354|consen 292 IEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEAR 371 (746)
T ss_pred cccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcch
Confidence 0 00 0000 0 0000 00000000
Q ss_pred ---------------ccccccChhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccc-cccceEEEEee--
Q 001729 248 ---------------MANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKP-LSSFFKVHILH-- 309 (1020)
Q Consensus 248 ---------------~~~~~~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~-~~~~~~v~~lH-- 309 (1020)
..+........+.+.+.+.......+ ..++|||+.+++.++.+...|.. ...+++...+-
T Consensus 372 ~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~--dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq 449 (746)
T KOG0354|consen 372 LIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNP--DSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQ 449 (746)
T ss_pred hhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCC--CccEEEEEehHHHHHHHHHHHHhhhhcccccceeeec
Confidence 00000000111112222222222222 36899999999999999888873 22223333332
Q ss_pred ------cccchHHHHHHHHhhhccc-eEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHh
Q 001729 310 ------SSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQR 382 (1020)
Q Consensus 310 ------s~l~~~er~~i~~~f~~gr-kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR 382 (1020)
.+|++.+|.++++.|+.|+ +|||||+|+|+|+||+.|+.||- ||...+.-. .+||
T Consensus 450 ~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIc--------Yd~~snpIr----------mIQr 511 (746)
T KOG0354|consen 450 GKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVIC--------YDYSSNPIR----------MVQR 511 (746)
T ss_pred cccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEE--------ecCCccHHH----------HHHH
Confidence 3789999999999999999 99999999999999999999998 998875444 4999
Q ss_pred cCCCCcccCCeeEEeechh
Q 001729 383 RGRTGRTCDGQVYRLVTKS 401 (1020)
Q Consensus 383 ~GRAGR~~~G~c~rLys~~ 401 (1020)
.|| ||.+.|+|+.|++..
T Consensus 512 rGR-gRa~ns~~vll~t~~ 529 (746)
T KOG0354|consen 512 RGR-GRARNSKCVLLTTGS 529 (746)
T ss_pred hcc-ccccCCeEEEEEcch
Confidence 999 999999999999953
No 57
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.95 E-value=2.7e-27 Score=289.68 Aligned_cols=298 Identities=21% Similarity=0.257 Sum_probs=194.5
Q ss_pred chhhhHHHHHHHHhhc------cEEEEecCCCCCCcCChhhhhhhc--CCccccccCCceehhhhHHHHHhhccccccCc
Q 001729 27 PVMSLREKIVEKVLEN------RVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPRRFAVVAVAKMVAKGRNCELGG 98 (1020)
Q Consensus 27 Pi~~~Q~eil~~i~~~------~~vII~apTGSGKTt~ip~~lle~--~~~~IivtqPrrlaa~sva~rva~e~~~~lg~ 98 (1020)
.+++.|.++++.|..+ .+.+++|+||||||.++...++.. ...+++++.|++++|.|+++.+.+.++ ..|.
T Consensus 235 ~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~-~~gi 313 (630)
T TIGR00643 235 KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLA-PLGI 313 (630)
T ss_pred CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhc-ccCc
Confidence 3789999999999865 268999999999997766555443 224788899999999999988876543 2233
Q ss_pred ccceecccc----------ccccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhccC
Q 001729 99 EVGYHIGHS----------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKN 168 (1020)
Q Consensus 99 ~Vgy~i~~~----------~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~ 168 (1020)
.++...+.. .....+.+|+|+|++.+.. .+.+.++++|||||+|.-+. .....+.....
T Consensus 314 ~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg~------~qr~~l~~~~~ 382 (630)
T TIGR00643 314 EVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFGV------EQRKKLREKGQ 382 (630)
T ss_pred EEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhccH------HHHHHHHHhcc
Confidence 333322211 1123457999999987753 23455899999999994221 11112222222
Q ss_pred ---CeEEEEeecccchhhhhHH-HhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCC
Q 001729 169 ---DLRVVLMSATADITKYRDY-FRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGP 244 (1020)
Q Consensus 169 ---~lkiIlmSATld~~~~~~~-f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~ 244 (1020)
..++++||||+.+..+... ++.+ ....+...|.. + .++... +
T Consensus 383 ~~~~~~~l~~SATp~prtl~l~~~~~l---~~~~i~~~p~~---r-~~i~~~-----------------------~---- 428 (630)
T TIGR00643 383 GGFTPHVLVMSATPIPRTLALTVYGDL---DTSIIDELPPG---R-KPITTV-----------------------L---- 428 (630)
T ss_pred cCCCCCEEEEeCCCCcHHHHHHhcCCc---ceeeeccCCCC---C-CceEEE-----------------------E----
Confidence 5789999999755443322 1111 00011111110 0 000000 0
Q ss_pred CCcccccccChhHHHHHHHhhhhhccCCccccccEEEEecchh--------hHHHhhhhccccccceEEEEeecccchHH
Q 001729 245 SPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYY--------ALEQQWHLMKPLSSFFKVHILHSSVDTEQ 316 (1020)
Q Consensus 245 ~~~~~~~~~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~--------~ie~l~~~L~~~~~~~~v~~lHs~l~~~e 316 (1020)
..........+.+.+ .+. .+++++||||..+ .++.+++.|.....++.+..+||+|+.++
T Consensus 429 ----~~~~~~~~~~~~i~~---~l~-----~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~e 496 (630)
T TIGR00643 429 ----IKHDEKDIVYEFIEE---EIA-----KGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDE 496 (630)
T ss_pred ----eCcchHHHHHHHHHH---HHH-----hCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHH
Confidence 000000111121211 111 1358999999764 45566666664445688999999999999
Q ss_pred HHHHHHhhhccc-eEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc-cCCee
Q 001729 317 ALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQV 394 (1020)
Q Consensus 317 r~~i~~~f~~gr-kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c 394 (1020)
|..+++.|+.|+ +|||||+++|+|||+|++++||. ||.+.. +-+++.||+||+||. .+|.|
T Consensus 497 R~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi--------~~~~r~---------gls~lhQ~~GRvGR~g~~g~~ 559 (630)
T TIGR00643 497 KEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVI--------EDAERF---------GLSQLHQLRGRVGRGDHQSYC 559 (630)
T ss_pred HHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEE--------eCCCcC---------CHHHHHHHhhhcccCCCCcEE
Confidence 999999999998 99999999999999999999997 776641 335679999999998 68999
Q ss_pred EEeec
Q 001729 395 YRLVT 399 (1020)
Q Consensus 395 ~rLys 399 (1020)
|.++.
T Consensus 560 il~~~ 564 (630)
T TIGR00643 560 LLVYK 564 (630)
T ss_pred EEEEC
Confidence 99984
No 58
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.95 E-value=4.1e-28 Score=260.23 Aligned_cols=310 Identities=20% Similarity=0.257 Sum_probs=218.6
Q ss_pred chhhhHHHHHHHHhhccEEEEecCCCCCCcCCh--hhhh--hhcCC--------c-cccccCCceehhhhHHHHHhhcc-
Q 001729 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQV--PQFL--LAENM--------E-PILCTQPRRFAVVAVAKMVAKGR- 92 (1020)
Q Consensus 27 Pi~~~Q~eil~~i~~~~~vII~apTGSGKTt~i--p~~l--le~~~--------~-~IivtqPrrlaa~sva~rva~e~- 92 (1020)
-.+++|-+-++.++.+++.|-.|-||||||..+ |.++ ++... + --+++.|.|.+|.|....+....
T Consensus 192 ~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~ 271 (610)
T KOG0341|consen 192 HPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVA 271 (610)
T ss_pred CCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHH
Confidence 356788888999999999999999999999543 3332 33221 1 23455688888888766554321
Q ss_pred -----cccc---Cccc-ceecc-ccccccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhh
Q 001729 93 -----NCEL---GGEV-GYHIG-HSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQ 162 (1020)
Q Consensus 93 -----~~~l---g~~V-gy~i~-~~~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ 162 (1020)
|.+. +--+ |..++ .-+....+.+|+|+|||+|.+++..+.+++.-.+++.+|||+ |+++.+|-..+-..
T Consensus 272 ~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEAD-RmiDmGFEddir~i 350 (610)
T KOG0341|consen 272 ALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEAD-RMIDMGFEDDIRTI 350 (610)
T ss_pred HHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHH-HHhhccchhhHHHH
Confidence 1110 0001 11111 123446789999999999999998887777788999999999 99999887766544
Q ss_pred HhhccCCeEEEEeecccchhhhhHHHhh-cCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccC
Q 001729 163 LLLKKNDLRVVLMSATADITKYRDYFRD-LGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYC 241 (1020)
Q Consensus 163 ll~~~~~lkiIlmSATld~~~~~~~f~~-~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~ 241 (1020)
+-......|.+++|||++. +++.|-.. +..+..+.|-..... ....-.++.|+.+..
T Consensus 351 F~~FK~QRQTLLFSATMP~-KIQ~FAkSALVKPvtvNVGRAGAA--sldViQevEyVkqEa------------------- 408 (610)
T KOG0341|consen 351 FSFFKGQRQTLLFSATMPK-KIQNFAKSALVKPVTVNVGRAGAA--SLDVIQEVEYVKQEA------------------- 408 (610)
T ss_pred HHHHhhhhheeeeeccccH-HHHHHHHhhcccceEEeccccccc--chhHHHHHHHHHhhh-------------------
Confidence 4444567799999999973 34444332 122111221111000 011111233332211
Q ss_pred CCCCCcccccccChhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHH
Q 001729 242 SGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAM 321 (1020)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~ 321 (1020)
.+..++.-+.++. .++|||+..+.+++.++++|. ..++.++.+||+-++++|...+
T Consensus 409 ------------------KiVylLeCLQKT~----PpVLIFaEkK~DVD~IhEYLL--lKGVEavaIHGGKDQedR~~ai 464 (610)
T KOG0341|consen 409 ------------------KIVYLLECLQKTS----PPVLIFAEKKADVDDIHEYLL--LKGVEAVAIHGGKDQEDRHYAI 464 (610)
T ss_pred ------------------hhhhHHHHhccCC----CceEEEeccccChHHHHHHHH--HccceeEEeecCcchhHHHHHH
Confidence 1223333344443 489999999999999999987 5678999999999999999999
Q ss_pred Hhhhccc-eEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc-cCCeeEEeec
Q 001729 322 KICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVT 399 (1020)
Q Consensus 322 ~~f~~gr-kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c~rLys 399 (1020)
+.|+.|+ .|+|||++|..|+|+|+|.+||| ||.|..++.| .||+||+||. ..|.+-.++.
T Consensus 465 ~afr~gkKDVLVATDVASKGLDFp~iqHVIN--------yDMP~eIENY----------VHRIGRTGRsg~~GiATTfIN 526 (610)
T KOG0341|consen 465 EAFRAGKKDVLVATDVASKGLDFPDIQHVIN--------YDMPEEIENY----------VHRIGRTGRSGKTGIATTFIN 526 (610)
T ss_pred HHHhcCCCceEEEecchhccCCCccchhhcc--------CCChHHHHHH----------HHHhcccCCCCCcceeeeeec
Confidence 9999988 99999999999999999999999 9999977766 9999999999 6799998888
Q ss_pred hh
Q 001729 400 KS 401 (1020)
Q Consensus 400 ~~ 401 (1020)
+.
T Consensus 527 K~ 528 (610)
T KOG0341|consen 527 KN 528 (610)
T ss_pred cc
Confidence 64
No 59
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.95 E-value=1.6e-27 Score=274.11 Aligned_cols=296 Identities=19% Similarity=0.197 Sum_probs=185.0
Q ss_pred EEEEecCCCCCCcCChhhhhhhc----CCccccccCCceehhhhHHHHHhhccccccCccccee------cccc-----c
Q 001729 44 VTLIVGETGCGKSSQVPQFLLAE----NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYH------IGHS-----K 108 (1020)
Q Consensus 44 ~vII~apTGSGKTt~ip~~lle~----~~~~IivtqPrrlaa~sva~rva~e~~~~lg~~Vgy~------i~~~-----~ 108 (1020)
+++|+||||||||+++.++++.. ...+++++.|++.++.++++++...++..+|...|.. ...+ .
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEEFEH 80 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchhHHH
Confidence 47999999999999888887753 2358999999999999999999887665443211110 0000 0
Q ss_pred ---------cccccceEEeeechhhhHHHHHh----cc--ccceeEEEEeecccccccc-cceeehhhhhHhhccCCeEE
Q 001729 109 ---------HLSERSKIVFKTAGVLLDEMRDR----GL--NALKYKVIILDEVHERSVE-SDLVLVCVKQLLLKKNDLRV 172 (1020)
Q Consensus 109 ---------~~~~~t~Iiv~Tpg~Ll~~l~~~----~l--~l~~~s~IIIDEaHER~l~-~d~ll~~lk~ll~~~~~lki 172 (1020)
.......|+++||+.++..+... .. .....++|||||+|..... .+++..+++.+. ..+.++
T Consensus 81 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~--~~~~~~ 158 (358)
T TIGR01587 81 LFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLK--DNDVPI 158 (358)
T ss_pred HHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHH--HcCCCE
Confidence 00124679999999998776541 01 1114589999999943221 123333333332 356899
Q ss_pred EEeecccchhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCcccccc
Q 001729 173 VLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAE 252 (1020)
Q Consensus 173 IlmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1020)
|+||||++ +.+.+++....... .....+... .. . .....+.. ....
T Consensus 159 i~~SATlp-~~l~~~~~~~~~~~--~~~~~~~~~----~~---~------------------~~~~~~~~------~~~~ 204 (358)
T TIGR01587 159 LLMSATLP-KFLKEYAEKIGYVE--FNEPLDLKE----ER---R------------------FERHRFIK------IESD 204 (358)
T ss_pred EEEecCch-HHHHHHHhcCCCcc--cccCCCCcc----cc---c------------------ccccccee------eccc
Confidence 99999987 55666665421110 000000000 00 0 00000000 0000
Q ss_pred cChhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHH----HHhhhccc
Q 001729 253 IKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMA----MKICKSHR 328 (1020)
Q Consensus 253 ~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i----~~~f~~gr 328 (1020)
. ......+.+++..+. .++++||||+++++++.+++.|........+..+||++++.+|..+ ++.|+.++
T Consensus 205 ~-~~~~~~l~~l~~~~~-----~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~ 278 (358)
T TIGR01587 205 K-VGEISSLERLLEFIK-----KGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNE 278 (358)
T ss_pred c-ccCHHHHHHHHHHhh-----CCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCC
Confidence 0 000112222322221 1369999999999999999999865544579999999999988664 77898888
Q ss_pred -eEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCccc--C---CeeEEeechhh
Q 001729 329 -KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC--D---GQVYRLVTKSF 402 (1020)
Q Consensus 329 -kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~--~---G~c~rLys~~~ 402 (1020)
+|||||+++|+||||| +++||. |+. +..+++||+||+||.+ . |.+|.++...+
T Consensus 279 ~~ilvaT~~~~~GiDi~-~~~vi~--------~~~------------~~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 279 KFVIVATQVIEASLDIS-ADVMIT--------ELA------------PIDSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred CeEEEECcchhceeccC-CCEEEE--------cCC------------CHHHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 9999999999999996 677775 432 2356799999999973 2 37777776544
No 60
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.94 E-value=1.8e-26 Score=280.31 Aligned_cols=327 Identities=17% Similarity=0.142 Sum_probs=191.3
Q ss_pred hhhhHHHHHHHHhhcc-EEEEecCCCCCCcCChhhhhhhc-----CCccccccCCceehhhhHHHHHhhcccccc-----
Q 001729 28 VMSLREKIVEKVLENR-VTLIVGETGCGKSSQVPQFLLAE-----NMEPILCTQPRRFAVVAVAKMVAKGRNCEL----- 96 (1020)
Q Consensus 28 i~~~Q~eil~~i~~~~-~vII~apTGSGKTt~ip~~lle~-----~~~~IivtqPrrlaa~sva~rva~e~~~~l----- 96 (1020)
.+++|.++++.++.++ ++++.+|||||||.++..+++.. ..++++++.|||.+|.|+++.+..... .+
T Consensus 16 PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k-~l~~~~~ 94 (844)
T TIGR02621 16 PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGE-RLPDVPE 94 (844)
T ss_pred CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHHHH-Hhcccch
Confidence 7899999999999997 67888999999997655444422 123677889999999998776544211 11
Q ss_pred ------------------Ccccceecccc------ccccccceEEeeechhhhHHHHH---------hccc---cceeEE
Q 001729 97 ------------------GGEVGYHIGHS------KHLSERSKIVFKTAGVLLDEMRD---------RGLN---ALKYKV 140 (1020)
Q Consensus 97 ------------------g~~Vgy~i~~~------~~~~~~t~Iiv~Tpg~Ll~~l~~---------~~l~---l~~~s~ 140 (1020)
...+...++.. ......++|+|+|++++.+.... .++. +.++++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~~v~~ 174 (844)
T TIGR02621 95 VEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLGQDAL 174 (844)
T ss_pred hhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhhhhccceE
Confidence 01112112221 12345689999997666443321 0111 347999
Q ss_pred EEeecccccccccceeehhhhhHhh--ccC---CeEEEEeecccchhhh--hHHHhhcCCcceEEEEEecCCCchhhHHH
Q 001729 141 IILDEVHERSVESDLVLVCVKQLLL--KKN---DLRVVLMSATADITKY--RDYFRDLGRGERVEVLAIPSTNQRTIFQR 213 (1020)
Q Consensus 141 IIIDEaHER~l~~d~ll~~lk~ll~--~~~---~lkiIlmSATld~~~~--~~~f~~~~~~~~v~v~~~p~~~~~~~~~v 213 (1020)
||||||| ++..|...+.+.+.. ..+ ++|+++||||++.+.. ...+.. .+...++.. . +.
T Consensus 175 LVLDEAD---Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~--~p~~i~V~~--~----~l--- 240 (844)
T TIGR02621 175 IVHDEAH---LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSA--EDYKHPVLK--K----RL--- 240 (844)
T ss_pred EEEehhh---hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHcc--CCceeeccc--c----cc---
Confidence 9999999 445554433333321 122 3799999999964322 222211 111111100 0 00
Q ss_pred hhhHHHHHHHHhcCCccccccccccccCCCCCCcccccccChhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhh
Q 001729 214 RVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQW 293 (1020)
Q Consensus 214 ~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~ 293 (1020)
..... ..+... ........++..+. .+... .++++||||||++.++.++
T Consensus 241 ------------------~a~ki-~q~v~v--------~~e~Kl~~lv~~L~-~ll~e---~g~~vLVF~NTv~~Aq~L~ 289 (844)
T TIGR02621 241 ------------------AAKKI-VKLVPP--------SDEKFLSTMVKELN-LLMKD---SGGAILVFCRTVKHVRKVF 289 (844)
T ss_pred ------------------cccce-EEEEec--------ChHHHHHHHHHHHH-HHHhh---CCCcEEEEECCHHHHHHHH
Confidence 00000 000000 00001111121221 11111 1468999999999999999
Q ss_pred hhccccccceEEEEeecccchHHHH-----HHHHhhhc----c--------ceEEEEeccccccccccceeEEeecccce
Q 001729 294 HLMKPLSSFFKVHILHSSVDTEQAL-----MAMKICKS----H--------RKVILATNIAESSVTIPKVAYVIDSCRSL 356 (1020)
Q Consensus 294 ~~L~~~~~~~~v~~lHs~l~~~er~-----~i~~~f~~----g--------rkVLVATniae~GIdIp~V~~VId~G~~k 356 (1020)
+.|.... + ..+||+|++.+|. .+++.|++ + .+|||||+++|+||||+. ++||+
T Consensus 290 ~~L~~~g--~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~----- 359 (844)
T TIGR02621 290 AKLPKEK--F--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVC----- 359 (844)
T ss_pred HHHHhcC--C--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEE-----
Confidence 9998533 3 8899999999999 77888865 2 379999999999999987 67764
Q ss_pred eeeeeccccccceeeEEeehhHHHHhcCCCCcccC--CeeEEeechhhcccc-cccCCcceehhhHhHHHHH
Q 001729 357 QVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD--GQVYRLVTKSFFGTL-EDHECPAILRLSLRLQVLL 425 (1020)
Q Consensus 357 ~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~--G~c~rLys~~~~~~l-~~~~~PEI~r~~L~~~vL~ 425 (1020)
++.+ ..+|+||+||+||.+. |..+.+++.+.-..- ...-.||+++..+..+.+.
T Consensus 360 ---d~aP------------~esyIQRiGRtgR~G~~~~~~i~vv~~~~~~~~~~~vY~~~~l~~t~~~L~~~ 416 (844)
T TIGR02621 360 ---DLAP------------FESMQQRFGRVNRFGELQACQIAVVHLDLGKDQDFDVYGKKIDKSTWSTLKKL 416 (844)
T ss_pred ---CCCC------------HHHHHHHhcccCCCCCCCCceEEEEeeccCCCcccCCCCHHHHHHHHHHHHHH
Confidence 3322 2567999999999843 333444433211111 1112367777666544433
No 61
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.94 E-value=6.4e-27 Score=297.76 Aligned_cols=300 Identities=15% Similarity=0.184 Sum_probs=200.8
Q ss_pred cchhhhHHHHHHHHhhc------cEEEEecCCCCCCcCChhhhhhh--cCCccccccCCceehhhhHHHHHhhccccccC
Q 001729 26 LPVMSLREKIVEKVLEN------RVTLIVGETGCGKSSQVPQFLLA--ENMEPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (1020)
Q Consensus 26 LPi~~~Q~eil~~i~~~------~~vII~apTGSGKTt~ip~~lle--~~~~~IivtqPrrlaa~sva~rva~e~~~~lg 97 (1020)
...++.|.++++.+..+ .+++++|+||+|||.++...+.. ....+++++.|++.+|.|+++.+.+.++. .+
T Consensus 599 ~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~-~~ 677 (1147)
T PRK10689 599 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFAN-WP 677 (1147)
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhcc-CC
Confidence 34788999999999887 79999999999999654433321 22357899999999999999988764432 12
Q ss_pred cccceeccccc----------cccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhcc
Q 001729 98 GEVGYHIGHSK----------HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKK 167 (1020)
Q Consensus 98 ~~Vgy~i~~~~----------~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~ 167 (1020)
..++...++.. ......+|+|+||+.+. ..+.+.++++|||||+|. . .......+...+
T Consensus 678 v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~-----~~v~~~~L~lLVIDEahr-f-----G~~~~e~lk~l~ 746 (1147)
T PRK10689 678 VRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ-----SDVKWKDLGLLIVDEEHR-F-----GVRHKERIKAMR 746 (1147)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh-----CCCCHhhCCEEEEechhh-c-----chhHHHHHHhcC
Confidence 22222212111 01235799999997542 233455899999999994 2 112233344456
Q ss_pred CCeEEEEeecccchhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCc
Q 001729 168 NDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPS 247 (1020)
Q Consensus 168 ~~lkiIlmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 247 (1020)
++.++++||||+.+..+......+. . ..++..+... + .++...
T Consensus 747 ~~~qvLl~SATpiprtl~l~~~gl~--d-~~~I~~~p~~--r-~~v~~~------------------------------- 789 (1147)
T PRK10689 747 ADVDILTLTATPIPRTLNMAMSGMR--D-LSIIATPPAR--R-LAVKTF------------------------------- 789 (1147)
T ss_pred CCCcEEEEcCCCCHHHHHHHHhhCC--C-cEEEecCCCC--C-CCceEE-------------------------------
Confidence 7889999999986554433222211 1 2222222211 0 011000
Q ss_pred ccccccChhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhcc
Q 001729 248 MANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSH 327 (1020)
Q Consensus 248 ~~~~~~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~g 327 (1020)
......... ...++..+.. +++++||+|+.+.++.+++.|....++..+..+||+|++++|.+++..|++|
T Consensus 790 -~~~~~~~~~---k~~il~el~r-----~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~G 860 (1147)
T PRK10689 790 -VREYDSLVV---REAILREILR-----GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQ 860 (1147)
T ss_pred -EEecCcHHH---HHHHHHHHhc-----CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhc
Confidence 000000001 1122222221 3689999999999999999998765667899999999999999999999999
Q ss_pred c-eEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc-cCCeeEEeech
Q 001729 328 R-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTK 400 (1020)
Q Consensus 328 r-kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c~rLys~ 400 (1020)
+ +|||||+++|+|||||++++||. ++... + +-++|.||+||+||. ..|.||.++..
T Consensus 861 k~~VLVaTdIierGIDIP~v~~VIi--------~~ad~----f-----glaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 861 RFNVLVCTTIIETGIDIPTANTIII--------ERADH----F-----GLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred CCCEEEECchhhcccccccCCEEEE--------ecCCC----C-----CHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 9 99999999999999999999994 22211 1 235679999999999 78999988864
No 62
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.94 E-value=4.1e-27 Score=300.50 Aligned_cols=303 Identities=21% Similarity=0.246 Sum_probs=188.2
Q ss_pred EecCCCCCCcCChhhhhhhcC---------------CccccccCCceehhhhHHHHHhh----------ccc-cccCccc
Q 001729 47 IVGETGCGKSSQVPQFLLAEN---------------MEPILCTQPRRFAVVAVAKMVAK----------GRN-CELGGEV 100 (1020)
Q Consensus 47 I~apTGSGKTt~ip~~lle~~---------------~~~IivtqPrrlaa~sva~rva~----------e~~-~~lg~~V 100 (1020)
|++|||||||.++..++++.. ..+++++.|++.++.++.+.+.. .++ ...+..|
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999977666554321 13688999999999998887643 111 1123344
Q ss_pred ceeccccc------cccccceEEeeechhhhHHHHHhc-cccceeEEEEeecccccccccce---eehhhhhHhhc-cCC
Q 001729 101 GYHIGHSK------HLSERSKIVFKTAGVLLDEMRDRG-LNALKYKVIILDEVHERSVESDL---VLVCVKQLLLK-KND 169 (1020)
Q Consensus 101 gy~i~~~~------~~~~~t~Iiv~Tpg~Ll~~l~~~~-l~l~~~s~IIIDEaHER~l~~d~---ll~~lk~ll~~-~~~ 169 (1020)
+...+... .....++|+|+|||.|..++.++. ..+.++++|||||+|+ ..+.+. +...+.++... ..+
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~-L~g~kRG~~Lel~LeRL~~l~~~~ 159 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHA-VAGSKRGAHLALSLERLDALLHTS 159 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHH-hcccccccHHHHHHHHHHHhCCCC
Confidence 43333211 123468999999999988765432 2355999999999994 333322 22234444333 356
Q ss_pred eEEEEeeccc-chhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhh-HHHHHHHHhcCCccccccccccccCCCCCCc
Q 001729 170 LRVVLMSATA-DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVS-YLEQVTELLGVDHGMTSELSSLRYCSGPSPS 247 (1020)
Q Consensus 170 lkiIlmSATl-d~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~-yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 247 (1020)
.|+|++|||+ +.+.+.+|+.. ..++.++..+.. +..++.+. ...+..+. . . ...........
T Consensus 160 ~QrIgLSATI~n~eevA~~L~g---~~pv~Iv~~~~~---r~~~l~v~vp~~d~~~~-~------~---~~~~~~~~~~~ 223 (1490)
T PRK09751 160 AQRIGLSATVRSASDVAAFLGG---DRPVTVVNPPAM---RHPQIRIVVPVANMDDV-S------S---VASGTGEDSHA 223 (1490)
T ss_pred CeEEEEEeeCCCHHHHHHHhcC---CCCEEEECCCCC---cccceEEEEecCchhhc-c------c---cccccccccch
Confidence 8999999998 77788888853 234555432221 11111110 00000000 0 0 00000000000
Q ss_pred ccccccChhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhcccccc--------------------------
Q 001729 248 MANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSS-------------------------- 301 (1020)
Q Consensus 248 ~~~~~~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~-------------------------- 301 (1020)
.....+.+.+. ..++..+.. .+++|||+|+++.++.++..|+....
T Consensus 224 ~r~~~i~~~v~---~~il~~i~~-----~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (1490)
T PRK09751 224 GREGSIWPYIE---TGILDEVLR-----HRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNR 295 (1490)
T ss_pred hhhhhhhHHHH---HHHHHHHhc-----CCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhc
Confidence 00001111111 122222221 25899999999999999988864311
Q ss_pred -----ceEEEEeecccchHHHHHHHHhhhccc-eEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEee
Q 001729 302 -----FFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVS 375 (1020)
Q Consensus 302 -----~~~v~~lHs~l~~~er~~i~~~f~~gr-kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iS 375 (1020)
.+.+..+||+|++++|..+++.|++|+ +|||||+++|.||||++|++||+ |+.|. |
T Consensus 296 ~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq--------~gsP~----------s 357 (1490)
T PRK09751 296 VQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQ--------VATPL----------S 357 (1490)
T ss_pred cccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEE--------eCCCC----------C
Confidence 123678999999999999999999999 99999999999999999999999 77765 6
Q ss_pred hhHHHHhcCCCCcccCC
Q 001729 376 QSQAEQRRGRTGRTCDG 392 (1020)
Q Consensus 376 kas~~QR~GRAGR~~~G 392 (1020)
.++|+||+|||||...|
T Consensus 358 Vas~LQRiGRAGR~~gg 374 (1490)
T PRK09751 358 VASGLQRIGRAGHQVGG 374 (1490)
T ss_pred HHHHHHHhCCCCCCCCC
Confidence 67779999999998433
No 63
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.94 E-value=2.3e-26 Score=268.95 Aligned_cols=307 Identities=20% Similarity=0.184 Sum_probs=210.6
Q ss_pred hhHHHHHHHHhhccEEEEecCCCCCCc--CChhhhhhhcCCccccccCCceehh-hhHHHHHhhccccccCcccceeccc
Q 001729 30 SLREKIVEKVLENRVTLIVGETGCGKS--SQVPQFLLAENMEPILCTQPRRFAV-VAVAKMVAKGRNCELGGEVGYHIGH 106 (1020)
Q Consensus 30 ~~Q~eil~~i~~~~~vII~apTGSGKT--t~ip~~lle~~~~~IivtqPrrlaa-~sva~rva~e~~~~lg~~Vgy~i~~ 106 (1020)
+-|.++|+++.+++++++..|||+||| +|+|..+++ +..+|+.|--.+. .|+..-.+ .|....-.-+-....
T Consensus 20 ~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~~---G~TLVVSPLiSLM~DQV~~l~~--~Gi~A~~lnS~l~~~ 94 (590)
T COG0514 20 PGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLLE---GLTLVVSPLISLMKDQVDQLEA--AGIRAAYLNSTLSRE 94 (590)
T ss_pred CCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhcC---CCEEEECchHHHHHHHHHHHHH--cCceeehhhcccCHH
Confidence 459999999999999999999999999 888888873 2556666743332 23333221 221110000000011
Q ss_pred c------ccccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccc-cceeehh--hhhHhhccCCeEEEEeec
Q 001729 107 S------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVE-SDLVLVC--VKQLLLKKNDLRVVLMSA 177 (1020)
Q Consensus 107 ~------~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~-~d~ll~~--lk~ll~~~~~lkiIlmSA 177 (1020)
+ .......+++|.+|++|...-..+.+....+++++|||||.-+-. .||...+ +..+....+++.++.+||
T Consensus 95 e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~~~p~~AlTA 174 (590)
T COG0514 95 ERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLPNPPVLALTA 174 (590)
T ss_pred HHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhCCCCCEEEEeC
Confidence 1 112345799999999997653333333348999999999975533 3676665 344555667899999999
Q ss_pred ccchhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCcccccccChhH
Q 001729 178 TADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEV 257 (1020)
Q Consensus 178 Tld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (1020)
|.+.....+....++...+..+..-..++ +..+.+... . ...
T Consensus 175 TA~~~v~~DI~~~L~l~~~~~~~~sfdRp-Ni~~~v~~~-----------------------------~--------~~~ 216 (590)
T COG0514 175 TATPRVRDDIREQLGLQDANIFRGSFDRP-NLALKVVEK-----------------------------G--------EPS 216 (590)
T ss_pred CCChHHHHHHHHHhcCCCcceEEecCCCc-hhhhhhhhc-----------------------------c--------cHH
Confidence 99877777766665544432222211111 111111100 0 000
Q ss_pred HHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc-eEEEEecc
Q 001729 258 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNI 336 (1020)
Q Consensus 258 ~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVLVATni 336 (1020)
.+.. .+.. ......++.||||.|+..++.+++.|... ++.+..+|++|+.++|..+.+.|..+. +|+|||+.
T Consensus 217 ~q~~--fi~~---~~~~~~~~GIIYc~sRk~~E~ia~~L~~~--g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~A 289 (590)
T COG0514 217 DQLA--FLAT---VLPQLSKSGIIYCLTRKKVEELAEWLRKN--GISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNA 289 (590)
T ss_pred HHHH--HHHh---hccccCCCeEEEEeeHHhHHHHHHHHHHC--CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEecc
Confidence 0000 1111 11122467899999999999999999954 789999999999999999999999888 99999999
Q ss_pred ccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc-cCCeeEEeechhhcc
Q 001729 337 AESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (1020)
Q Consensus 337 ae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c~rLys~~~~~ 404 (1020)
.++|||.|||++||+ ||.|..+++| +|-+|||||. .+..|+.||++.+..
T Consensus 290 FGMGIdKpdVRfViH--------~~lP~s~EsY----------yQE~GRAGRDG~~a~aill~~~~D~~ 340 (590)
T COG0514 290 FGMGIDKPDVRFVIH--------YDLPGSIESY----------YQETGRAGRDGLPAEAILLYSPEDIR 340 (590)
T ss_pred ccCccCCCCceEEEE--------ecCCCCHHHH----------HHHHhhccCCCCcceEEEeeccccHH
Confidence 999999999999999 9999966655 9999999999 789999999987653
No 64
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.93 E-value=3.8e-25 Score=264.29 Aligned_cols=319 Identities=16% Similarity=0.126 Sum_probs=195.8
Q ss_pred CcchhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhh---hhcCCccccccCCceehhhhHHHHHhhccccccCcccc
Q 001729 25 SLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFL---LAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (1020)
Q Consensus 25 ~LPi~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~l---le~~~~~IivtqPrrlaa~sva~rva~e~~~~lg~~Vg 101 (1020)
...++++|.+++..+..+++.++++|||+|||..+..++ ++....+++++.|++.++.|..+++.+....... .++
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~-~~~ 190 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPRE-AMH 190 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhcccccc-cee
Confidence 367889999999999999999999999999996544332 3444448999999999999999988764432211 111
Q ss_pred eeccccccccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhcc-CCeEEEEeecccc
Q 001729 102 YHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKK-NDLRVVLMSATAD 180 (1020)
Q Consensus 102 y~i~~~~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~-~~lkiIlmSATld 180 (1020)
...+.. ....+.+|+|+|++.+.+.... .+.++++|||||||+ ..... +..++... ...+++++|||+.
T Consensus 191 ~i~~g~-~~~~~~~I~VaT~qsl~~~~~~---~~~~~~~iIvDEaH~-~~~~~-----~~~il~~~~~~~~~lGLTATp~ 260 (501)
T PHA02558 191 KIYSGT-AKDTDAPIVVSTWQSAVKQPKE---WFDQFGMVIVDECHL-FTGKS-----LTSIITKLDNCKFKFGLTGSLR 260 (501)
T ss_pred EEecCc-ccCCCCCEEEeeHHHHhhchhh---hccccCEEEEEchhc-ccchh-----HHHHHHhhhccceEEEEeccCC
Confidence 111111 1124578999999999765422 234899999999994 43322 22332222 3457999999984
Q ss_pred hhhh--hHHHhhcCCcceEEEEEecC-CCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCccc----cccc
Q 001729 181 ITKY--RDYFRDLGRGERVEVLAIPS-TNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMA----NAEI 253 (1020)
Q Consensus 181 ~~~~--~~~f~~~~~~~~v~v~~~p~-~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 253 (1020)
...- ..++..+|.. ...+ .... ...+...+.++.. ... ........ .. ....+. ....
T Consensus 261 ~~~~~~~~~~~~fG~i-~~~v-~~~~li~~g~l~~~~~~~-------v~~--~~~~~~~~-~~---~~~~~~~~~~~l~~ 325 (501)
T PHA02558 261 DGKANILQYVGLFGDI-FKPV-TTSQLMEEGQVTDLKINS-------IFL--RYPDEDRV-KL---KGEDYQEEIKYITS 325 (501)
T ss_pred CccccHHHHHHhhCCc-eEEe-cHHHHHhCCCcCCceEEE-------Eec--cCCHHHhh-hh---cccchHHHHHHHhc
Confidence 3221 1122221110 0000 0000 0000000000000 000 00000000 00 000000 0000
Q ss_pred ChhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc-eEEE
Q 001729 254 KPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVIL 332 (1020)
Q Consensus 254 ~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVLV 332 (1020)
......++.+++..+... ++++|||+...++++.+++.|.. .+..+..+||+++.++|..+++.|+++. .|||
T Consensus 326 ~~~Rn~~I~~~~~~~~~~----~~~~lV~~~~~~h~~~L~~~L~~--~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLv 399 (501)
T PHA02558 326 HTKRNKWIANLALKLAKK----GENTFVMFKYVEHGKPLYEMLKK--VYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIV 399 (501)
T ss_pred cHHHHHHHHHHHHHHHhc----CCCEEEEEEEHHHHHHHHHHHHH--cCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEE
Confidence 111223444444443321 35789999999999999999985 4578999999999999999999999887 8999
Q ss_pred Ee-ccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcccCCe
Q 001729 333 AT-NIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQ 393 (1020)
Q Consensus 333 AT-niae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~ 393 (1020)
|| +++++|+|+|++++||. ++++. |+..+.||+||+||..+|+
T Consensus 400 aT~~~l~eG~Dip~ld~vIl--------~~p~~----------s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 400 ASYGVFSTGISIKNLHHVIF--------AHPSK----------SKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred EEcceeccccccccccEEEE--------ecCCc----------chhhhhhhhhccccCCCCC
Confidence 98 89999999999999996 66655 5666799999999997765
No 65
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.93 E-value=4.5e-26 Score=257.51 Aligned_cols=315 Identities=17% Similarity=0.218 Sum_probs=224.7
Q ss_pred hhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcC-----CccccccCCceehhhhHHHHHhhc----cccccCcc
Q 001729 29 MSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN-----MEPILCTQPRRFAVVAVAKMVAKG----RNCELGGE 99 (1020)
Q Consensus 29 ~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~-----~~~IivtqPrrlaa~sva~rva~e----~~~~lg~~ 99 (1020)
+++|..+|+++..+-++||.+..|+|||..+..+.++.. ...++++.|+|.+|+|+..-+... .|......
T Consensus 49 tkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvf 128 (980)
T KOG4284|consen 49 TKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVF 128 (980)
T ss_pred CchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEE
Confidence 578999999999999999999999999976666655532 236777888888888887766542 22222222
Q ss_pred ccee-ccccccccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhh-hHhhccCCeEEEEeec
Q 001729 100 VGYH-IGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVK-QLLLKKNDLRVVLMSA 177 (1020)
Q Consensus 100 Vgy~-i~~~~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk-~ll~~~~~lkiIlmSA 177 (1020)
+|.. +..+...-..++|+|+|||+++++...+.++...++++|+|||+ ..+++..+-.-+. .+-......|++.+||
T Consensus 129 IGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEAD-kL~~t~sfq~~In~ii~slP~~rQv~a~SA 207 (980)
T KOG4284|consen 129 IGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEAD-KLMDTESFQDDINIIINSLPQIRQVAAFSA 207 (980)
T ss_pred ecCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHH-hhhchhhHHHHHHHHHHhcchhheeeEEec
Confidence 2211 12233334578999999999999999888888899999999999 5666554444444 4444566789999999
Q ss_pred ccc---hhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCcccccccC
Q 001729 178 TAD---ITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIK 254 (1020)
Q Consensus 178 Tld---~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (1020)
|.+ .+.++.|.++ +. ++..... ...++.++-+|. ....+ ...
T Consensus 208 TYp~nLdn~Lsk~mrd-----p~-lVr~n~~-d~~L~GikQyv~-----------------------~~~s~-----nns 252 (980)
T KOG4284|consen 208 TYPRNLDNLLSKFMRD-----PA-LVRFNAD-DVQLFGIKQYVV-----------------------AKCSP-----NNS 252 (980)
T ss_pred cCchhHHHHHHHHhcc-----cc-eeecccC-Cceeechhheee-----------------------eccCC-----cch
Confidence 975 2455555543 11 1111111 111121111110 00011 111
Q ss_pred hhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc-eEEEE
Q 001729 255 PEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILA 333 (1020)
Q Consensus 255 ~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVLVA 333 (1020)
-+..++....+.++...-+ ....|||++....++.++..|. ..|+.+.++.|.|.+.+|..++..++.-+ +|||+
T Consensus 253 veemrlklq~L~~vf~~ip--y~QAlVF~~~~sra~~~a~~L~--ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVs 328 (980)
T KOG4284|consen 253 VEEMRLKLQKLTHVFKSIP--YVQALVFCDQISRAEPIATHLK--SSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVS 328 (980)
T ss_pred HHHHHHHHHHHHHHHhhCc--hHHHHhhhhhhhhhhHHHHHhh--ccCCCeEEeccccchhHHHHHHHHhhhceEEEEEe
Confidence 1233344445555555544 3588999999999999999998 66799999999999999999999999988 99999
Q ss_pred eccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc-cCCeeEEeechh
Q 001729 334 TNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKS 401 (1020)
Q Consensus 334 Tniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c~rLys~~ 401 (1020)
||..++|||-|.|+.||+ .|++.+.++| .||+|||||. ..|.++.++..+
T Consensus 329 TDLtaRGIDa~~vNLVVN--------iD~p~d~eTY----------~HRIGRAgRFG~~G~aVT~~~~~ 379 (980)
T KOG4284|consen 329 TDLTARGIDADNVNLVVN--------IDAPADEETY----------FHRIGRAGRFGAHGAAVTLLEDE 379 (980)
T ss_pred cchhhccCCccccceEEe--------cCCCcchHHH----------HHHhhhcccccccceeEEEeccc
Confidence 999999999999999999 8999887777 9999999999 569999887653
No 66
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=1.7e-26 Score=255.88 Aligned_cols=316 Identities=20% Similarity=0.289 Sum_probs=205.6
Q ss_pred hhhhHHHHHHHHhh---------ccEEEEecCCCCCCcCChhhhhhhcCCc------cccccCCceehhhhHHHHHhhcc
Q 001729 28 VMSLREKIVEKVLE---------NRVTLIVGETGCGKSSQVPQFLLAENME------PILCTQPRRFAVVAVAKMVAKGR 92 (1020)
Q Consensus 28 i~~~Q~eil~~i~~---------~~~vII~apTGSGKTt~ip~~lle~~~~------~IivtqPrrlaa~sva~rva~e~ 92 (1020)
.+++|..+++.++. .+++.|.||||||||..+..+|.+.... +.+|+.|+|.++.|++..+....
T Consensus 160 ~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~ 239 (620)
T KOG0350|consen 160 LFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRLN 239 (620)
T ss_pred ccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHhc
Confidence 56789999988842 4799999999999998777777654322 57778899999999988765533
Q ss_pred ccccCcccceeccccc------cc-cc----cceEEeeechhhhHHHH-HhccccceeEEEEeeccccccccccee----
Q 001729 93 NCELGGEVGYHIGHSK------HL-SE----RSKIVFKTAGVLLDEMR-DRGLNALKYKVIILDEVHERSVESDLV---- 156 (1020)
Q Consensus 93 ~~~lg~~Vgy~i~~~~------~~-~~----~t~Iiv~Tpg~Ll~~l~-~~~l~l~~~s~IIIDEaHER~l~~d~l---- 156 (1020)
. ..|-.|+...+..+ ++ .. ..+|+|+|||+|.+.+. .+++.+.++.++|||||+ |.++.-|.
T Consensus 240 ~-~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEAD-Rll~qsfQ~Wl~ 317 (620)
T KOG0350|consen 240 S-GTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEAD-RLLDQSFQEWLD 317 (620)
T ss_pred c-CCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHH-HHHHHHHHHHHH
Confidence 2 23333443333221 11 12 34999999999999998 567778899999999999 66554211
Q ss_pred --e---------hhhhhHhh-------------------ccCCeEEEEeeccc--chhhhhHHHhhcCCcceEEEEEecC
Q 001729 157 --L---------VCVKQLLL-------------------KKNDLRVVLMSATA--DITKYRDYFRDLGRGERVEVLAIPS 204 (1020)
Q Consensus 157 --l---------~~lk~ll~-------------------~~~~lkiIlmSATl--d~~~~~~~f~~~~~~~~v~v~~~p~ 204 (1020)
+ .....++. ..+.+.-+++|||+ ++.++.++--...+ +..+.-+.
T Consensus 318 ~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Pr---l~~v~~~~ 394 (620)
T KOG0350|consen 318 TVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPR---LFHVSKPL 394 (620)
T ss_pred HHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCCc---eEEeeccc
Confidence 0 01111111 12334466677776 55555554322110 11111000
Q ss_pred CCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCcccccccChhHHHHHHHhhhhhccCCccccccEEEEec
Q 001729 205 TNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLP 284 (1020)
Q Consensus 205 ~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~ 284 (1020)
. . .| .... .+...+.. .+..+.+- .+...|.... ..++|+|++
T Consensus 395 ~--~-ry------------------slp~-~l~~~~vv------~~~~~kpl------~~~~lI~~~k---~~r~lcf~~ 437 (620)
T KOG0350|consen 395 I--G-RY------------------SLPS-SLSHRLVV------TEPKFKPL------AVYALITSNK---LNRTLCFVN 437 (620)
T ss_pred c--e-ee------------------ecCh-hhhhceee------cccccchH------hHHHHHHHhh---cceEEEEec
Confidence 0 0 00 0000 00000000 00001110 1111122222 358999999
Q ss_pred chhhHHHhhhhcc-c-cccceEEEEeecccchHHHHHHHHhhhccc-eEEEEeccccccccccceeEEeecccceeeeee
Q 001729 285 TYYALEQQWHLMK-P-LSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWD 361 (1020)
Q Consensus 285 ~~~~ie~l~~~L~-~-~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVLVATniae~GIdIp~V~~VId~G~~k~~~yd 361 (1020)
+.+.+.+++..|. . ......+-.+.|++....|...++.|..|. +||||+|++++|||+.+|+.||+ ||
T Consensus 438 S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VIN--------Yd 509 (620)
T KOG0350|consen 438 SVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVIN--------YD 509 (620)
T ss_pred chHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEee--------cC
Confidence 9999999998886 1 123455667889999999999999999888 99999999999999999999999 99
Q ss_pred ccccccceeeEEeehhHHHHhcCCCCcc-cCCeeEEeechhhc
Q 001729 362 VNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFF 403 (1020)
Q Consensus 362 ~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c~rLys~~~~ 403 (1020)
+|.....| +||+||++|. +.|.||.|.++.+.
T Consensus 510 ~P~~~kty----------VHR~GRTARAgq~G~a~tll~~~~~ 542 (620)
T KOG0350|consen 510 PPASDKTY----------VHRAGRTARAGQDGYAITLLDKHEK 542 (620)
T ss_pred CCchhhHH----------HHhhcccccccCCceEEEeeccccc
Confidence 99855554 9999999999 78999999987654
No 67
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.93 E-value=1.1e-26 Score=275.60 Aligned_cols=445 Identities=16% Similarity=0.169 Sum_probs=267.1
Q ss_pred hhhhHHHHHHHH-hhccEEEEecCCCCCCcCChhhhhhhcCC------------ccccccCCceehhhhHHHHHhhcccc
Q 001729 28 VMSLREKIVEKV-LENRVTLIVGETGCGKSSQVPQFLLAENM------------EPILCTQPRRFAVVAVAKMVAKGRNC 94 (1020)
Q Consensus 28 i~~~Q~eil~~i-~~~~~vII~apTGSGKTt~ip~~lle~~~------------~~IivtqPrrlaa~sva~rva~e~~~ 94 (1020)
+..+|.++.+.. ..+.|.|||||||||||-.+.+.|+.... -+||++.|.+.+|..+++.+.+.++
T Consensus 111 fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~- 189 (1230)
T KOG0952|consen 111 FNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLA- 189 (1230)
T ss_pred HHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcc-
Confidence 456799999887 56789999999999999665555543211 2799999999999999988887664
Q ss_pred ccCcccceeccccc---cccccceEEeeechhhhHHHH---HhccccceeEEEEeecccccccccc---eeehhhhhHh-
Q 001729 95 ELGGEVGYHIGHSK---HLSERSKIVFKTAGVLLDEMR---DRGLNALKYKVIILDEVHERSVESD---LVLVCVKQLL- 164 (1020)
Q Consensus 95 ~lg~~Vgy~i~~~~---~~~~~t~Iiv~Tpg~Ll~~l~---~~~l~l~~~s~IIIDEaHER~l~~d---~ll~~lk~ll- 164 (1020)
.+|..|+--.+... ..-.+++|+|+||+.+--.-+ .+.-....+.+|||||+|- +..| .+..++.+.+
T Consensus 190 ~~gi~v~ELTGD~ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHl--Lhd~RGpvlEtiVaRtlr 267 (1230)
T KOG0952|consen 190 PLGISVRELTGDTQLTKTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHL--LHDDRGPVLETIVARTLR 267 (1230)
T ss_pred cccceEEEecCcchhhHHHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehh--hcCcccchHHHHHHHHHH
Confidence 34444443322222 113579999999998643222 1111133899999999992 2222 2333333333
Q ss_pred ---hccCCeEEEEeeccc-chhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCcccccccccccc
Q 001729 165 ---LKKNDLRVVLMSATA-DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRY 240 (1020)
Q Consensus 165 ---~~~~~lkiIlmSATl-d~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~ 240 (1020)
.....+|||++|||+ |.+++++|++.. ....+......- .|+.. .....-.+
T Consensus 268 ~vessqs~IRivgLSATlPN~eDvA~fL~vn---~~~glfsFd~~y----RPvpL----------------~~~~iG~k- 323 (1230)
T KOG0952|consen 268 LVESSQSMIRIVGLSATLPNYEDVARFLRVN---PYAGLFSFDQRY----RPVPL----------------TQGFIGIK- 323 (1230)
T ss_pred HHHhhhhheEEEEeeccCCCHHHHHHHhcCC---Cccceeeecccc----cccce----------------eeeEEeee-
Confidence 345679999999997 889999999742 011122211110 00000 00000000
Q ss_pred CCCCCCcccccccChhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccc------------c--c----
Q 001729 241 CSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLS------------S--F---- 302 (1020)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~------------~--~---- 302 (1020)
.. ........+....++.+.+.+ .. +.+++|||+++.+..+.++.|...+ . +
T Consensus 324 -~~-~~~~~~~~~d~~~~~kv~e~~----~~----g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~e 393 (1230)
T KOG0952|consen 324 -GK-KNRQQKKNIDEVCYDKVVEFL----QE----GHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKE 393 (1230)
T ss_pred -cc-cchhhhhhHHHHHHHHHHHHH----Hc----CCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHH
Confidence 00 001111112222222222222 21 3589999999999888887775211 0 1
Q ss_pred ---eEEEEeecccchHHHHHHHHhhhccc-eEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhH
Q 001729 303 ---FKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQ 378 (1020)
Q Consensus 303 ---~~v~~lHs~l~~~er~~i~~~f~~gr-kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas 378 (1020)
..+.++|+||..++|..+++.|.+|. +|++||..++.|+++|+-.++|- ....||...+. ..-.+-..
T Consensus 394 lf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIK----GT~~ydsskg~----f~dlgilD 465 (1230)
T KOG0952|consen 394 LFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIK----GTQVYDSSKGS----FVDLGILD 465 (1230)
T ss_pred HHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEec----CCcccccccCc----eeeehHHH
Confidence 35778999999999999999999988 99999999999999999888883 34557876642 12235567
Q ss_pred HHHhcCCCCcc---cCCeeEEeechh---hcccccccCCc---------------ceehh---hHhHHHHHhhccC--cc
Q 001729 379 AEQRRGRTGRT---CDGQVYRLVTKS---FFGTLEDHECP---------------AILRL---SLRLQVLLICCAE--SK 432 (1020)
Q Consensus 379 ~~QR~GRAGR~---~~G~c~rLys~~---~~~~l~~~~~P---------------EI~r~---~L~~~vL~l~~~~--~~ 432 (1020)
.+|..|||||. ..|..+.+-+.+ .|..+...+.| ||--. ++++.|=-|++.- .+
T Consensus 466 VlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl~~~~piES~~~~~L~dnLnAEi~LgTVt~VdeAVeWL~yTylYVR 545 (1230)
T KOG0952|consen 466 VLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLLTGQNPIESQLLPCLIDNLNAEISLGTVTNVDEAVEWLKYTYLYVR 545 (1230)
T ss_pred HHHHHhccCCCCCCCCceEEEEecccHHHHHHHHHcCCChhHHHHHHHHHHhhhhheeeceeecHHHHHHHhhceeEEEE
Confidence 79999999999 467777766653 34444433332 22211 1111111110000 00
Q ss_pred ccCChhHH--Hhhhc-CCCCc-----cchhhHHHHHHHHhhhhhcCCCCccCccccchhccccccccceeEEEEEecc-c
Q 001729 433 AISDPKVL--LQKAL-DPPYP-----EVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGE-I 503 (1020)
Q Consensus 433 ~l~~~~~~--l~~~l-dpP~~-----~~i~~al~~L~~lgald~~~~~g~~~lT~lG~~~a~lpldp~~a~~ll~~~~-~ 503 (1020)
.-..|... ....+ .-|.. +.+..++..|.....+--+..+|.+..|++||.|+.+.|..+..+.++.... +
T Consensus 546 m~KNP~~Ygi~~~~l~~dp~l~s~~~~l~~~~~~~L~~~qmi~~D~~t~~~~stdlGR~aS~yYik~ETme~~nn~~k~~ 625 (1230)
T KOG0952|consen 546 MRKNPMAYGISYEELEPDPRLESHRRELCLVAAMELDKVQMIRFDERTGYLKSTDLGRVASNYYIKYETMETFNNLPKSF 625 (1230)
T ss_pred eccChHHhhhhhhcccCCchHHHHHHHHHHHHHHHhhhhheEEEecccceEcccchhhhhhhhhhhhHHHHHHHhccccc
Confidence 00001000 00111 11211 2355566666665444332334777899999999999999988887777776 5
Q ss_pred hhhhhhhhhhhhcc
Q 001729 504 GMLREGILLGILMD 517 (1020)
Q Consensus 504 gc~~e~l~Iaa~ls 517 (1020)
--.++++-++++.+
T Consensus 626 ~se~~iL~lis~ae 639 (1230)
T KOG0952|consen 626 YSEDDILALISMAE 639 (1230)
T ss_pred CCHHHHHHHHHhhH
Confidence 56778887777754
No 68
>PRK13766 Hef nuclease; Provisional
Probab=99.92 E-value=1.3e-24 Score=273.88 Aligned_cols=360 Identities=20% Similarity=0.260 Sum_probs=221.0
Q ss_pred CCCCcccCcchhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhh---cCCccccccCCceehhhhHHHHHhhcccc
Q 001729 18 FTSPEFSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLA---ENMEPILCTQPRRFAVVAVAKMVAKGRNC 94 (1020)
Q Consensus 18 ~~~~~r~~LPi~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle---~~~~~IivtqPrrlaa~sva~rva~e~~~ 94 (1020)
+|-.....+..++||.+++..++.+ +++|++|||+|||.++...+.. ...++++++.|++.++.|.++.+...++.
T Consensus 6 ~~~~~~~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 84 (773)
T PRK13766 6 HPLIKPNTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNI 84 (773)
T ss_pred CCccCcCcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCC
Confidence 3444456688899999999988776 8999999999999765444432 23468999999999999998888776553
Q ss_pred ccCcccceecccc-----ccccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhccCC
Q 001729 95 ELGGEVGYHIGHS-----KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKND 169 (1020)
Q Consensus 95 ~lg~~Vgy~i~~~-----~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~ 169 (1020)
. +..++...+.. .....+.+|+|+||+++...+..+.+.+.++++||||||| |.........+.+......+.
T Consensus 85 ~-~~~v~~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH-~~~~~~~~~~i~~~~~~~~~~ 162 (773)
T PRK13766 85 P-EEKIVVFTGEVSPEKRAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAH-RAVGNYAYVYIAERYHEDAKN 162 (773)
T ss_pred C-CceEEEEeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCc-cccccccHHHHHHHHHhcCCC
Confidence 2 11111111111 1113467899999999998887766666799999999999 544433333344445455566
Q ss_pred eEEEEeeccc--chhhhhHHHhhcCCc------------------ceEEEEEecCCCchh-hHHHhhhHHHHHHHHh---
Q 001729 170 LRVVLMSATA--DITKYRDYFRDLGRG------------------ERVEVLAIPSTNQRT-IFQRRVSYLEQVTELL--- 225 (1020)
Q Consensus 170 lkiIlmSATl--d~~~~~~~f~~~~~~------------------~~v~v~~~p~~~~~~-~~~v~v~yl~~~~~~l--- 225 (1020)
.++++||||+ +.+.+......++.. ..+..+.++...... ....-..+++.....+
T Consensus 163 ~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~ 242 (773)
T PRK13766 163 PLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKEL 242 (773)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 7899999997 333444444443210 111111221111000 0000000111100000
Q ss_pred cCCcccc-----ccc--------------------------------------------cccccCC----CC---CCc--
Q 001729 226 GVDHGMT-----SEL--------------------------------------------SSLRYCS----GP---SPS-- 247 (1020)
Q Consensus 226 ~~~~~~~-----~~~--------------------------------------------~~~~~~~----~~---~~~-- 247 (1020)
+...... .+. ....|.. .. ...
T Consensus 243 ~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~ 322 (773)
T PRK13766 243 GVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKA 322 (773)
T ss_pred CCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHH
Confidence 0000000 000 0000000 00 000
Q ss_pred ---c-cc------------cccChhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecc
Q 001729 248 ---M-AN------------AEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSS 311 (1020)
Q Consensus 248 ---~-~~------------~~~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~ 311 (1020)
. .+ ........+.+.+++..+.... .++++|||+++++.++.+.+.|.. .++.+..+||.
T Consensus 323 ~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~--~~~kvlIF~~~~~t~~~L~~~L~~--~~~~~~~~~g~ 398 (773)
T PRK13766 323 SKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKN--PDSRIIVFTQYRDTAEKIVDLLEK--EGIKAVRFVGQ 398 (773)
T ss_pred HHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcC--CCCeEEEEeCcHHHHHHHHHHHHh--CCCceEEEEcc
Confidence 0 00 0000011222334444433222 247999999999999999999963 34666777775
Q ss_pred --------cchHHHHHHHHhhhccc-eEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHh
Q 001729 312 --------VDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQR 382 (1020)
Q Consensus 312 --------l~~~er~~i~~~f~~gr-kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR 382 (1020)
|++.+|..+++.|+.+. +|||||+++++|+|+|++++||. ||++. |...+.||
T Consensus 399 ~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~--------yd~~~----------s~~r~iQR 460 (773)
T PRK13766 399 ASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIF--------YEPVP----------SEIRSIQR 460 (773)
T ss_pred ccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEE--------eCCCC----------CHHHHHHH
Confidence 89899999999999988 99999999999999999999998 99876 44456999
Q ss_pred cCCCCcccCCeeEEeechhh
Q 001729 383 RGRTGRTCDGQVYRLVTKSF 402 (1020)
Q Consensus 383 ~GRAGR~~~G~c~rLys~~~ 402 (1020)
+||+||.++|.+|.|++++.
T Consensus 461 ~GR~gR~~~~~v~~l~~~~t 480 (773)
T PRK13766 461 KGRTGRQEEGRVVVLIAKGT 480 (773)
T ss_pred hcccCcCCCCEEEEEEeCCC
Confidence 99999999999999998653
No 69
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.92 E-value=3e-25 Score=266.32 Aligned_cols=314 Identities=18% Similarity=0.245 Sum_probs=225.2
Q ss_pred chhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcCC---------c-cccccCCceehhhhHHHHHhhcccccc
Q 001729 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM---------E-PILCTQPRRFAVVAVAKMVAKGRNCEL 96 (1020)
Q Consensus 27 Pi~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~~---------~-~IivtqPrrlaa~sva~rva~e~~~~l 96 (1020)
+.+++|.++|++|+.+++||.+|.||||||..+.++++.+.. + .-+++.|+|.+|.|+.+.+...... +
T Consensus 387 k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~-l 465 (997)
T KOG0334|consen 387 KPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKL-L 465 (997)
T ss_pred CCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhh-c
Confidence 778899999999999999999999999999777666553321 2 3567789999999998887665432 3
Q ss_pred Ccccceec---c---ccccccccceEEeeechhhhHHHHHhc---cccceeEEEEeecccccccccceeehhhhhHhhcc
Q 001729 97 GGEVGYHI---G---HSKHLSERSKIVFKTAGVLLDEMRDRG---LNALKYKVIILDEVHERSVESDLVLVCVKQLLLKK 167 (1020)
Q Consensus 97 g~~Vgy~i---~---~~~~~~~~t~Iiv~Tpg~Ll~~l~~~~---l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~ 167 (1020)
|..+--.. + +-..+...+.|+|||||+.+..+.... .++.++..+|+|||+ |+++..|.....+.+...+
T Consensus 466 ~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaD-rmfdmgfePq~~~Ii~nlr 544 (997)
T KOG0334|consen 466 GIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEAD-RMFDMGFEPQITRILQNLR 544 (997)
T ss_pred CceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhh-hhheeccCcccchHHhhcc
Confidence 32211111 1 112234569999999999998876332 233477799999999 8888888888888777789
Q ss_pred CCeEEEEeecccchhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCc
Q 001729 168 NDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPS 247 (1020)
Q Consensus 168 ~~lkiIlmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 247 (1020)
++.|.+++|||.+.. +...-... ...|++++-. +.. . ...+. ...
T Consensus 545 pdrQtvlfSatfpr~-m~~la~~v-l~~Pveiiv~-~~s--v---------------------V~k~V---------~q~ 589 (997)
T KOG0334|consen 545 PDRQTVLFSATFPRS-MEALARKV-LKKPVEIIVG-GRS--V---------------------VCKEV---------TQV 589 (997)
T ss_pred hhhhhhhhhhhhhHH-HHHHHHHh-hcCCeeEEEc-cce--e---------------------Eeccc---------eEE
Confidence 999999999997644 22222111 1134442211 100 0 00000 000
Q ss_pred ccccccChhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhcc
Q 001729 248 MANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSH 327 (1020)
Q Consensus 248 ~~~~~~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~g 327 (1020)
.....+..+.+..+.+++.... . .+++||||...+.+..+.+.|. ..++.+..+||+.++.+|..++..|+++
T Consensus 590 v~V~~~e~eKf~kL~eLl~e~~---e--~~~tiiFv~~qe~~d~l~~~L~--~ag~~~~slHGgv~q~dR~sti~dfK~~ 662 (997)
T KOG0334|consen 590 VRVCAIENEKFLKLLELLGERY---E--DGKTIIFVDKQEKADALLRDLQ--KAGYNCDSLHGGVDQHDRSSTIEDFKNG 662 (997)
T ss_pred EEEecCchHHHHHHHHHHHHHh---h--cCCEEEEEcCchHHHHHHHHHH--hcCcchhhhcCCCchHHHHhHHHHHhcc
Confidence 0111112222222223333222 2 3799999999999999999998 4567777799999999999999999999
Q ss_pred c-eEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc-cCCeeEEeechhh
Q 001729 328 R-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSF 402 (1020)
Q Consensus 328 r-kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c~rLys~~~ 402 (1020)
. ++||||+++++|+|++++..||+ ||.+.....| .||+||+||+ +.|.||.+.++++
T Consensus 663 ~~~LLvaTsvvarGLdv~~l~Lvvn--------yd~pnh~edy----------vhR~gRTgragrkg~AvtFi~p~q 721 (997)
T KOG0334|consen 663 VVNLLVATSVVARGLDVKELILVVN--------YDFPNHYEDY----------VHRVGRTGRAGRKGAAVTFITPDQ 721 (997)
T ss_pred CceEEEehhhhhcccccccceEEEE--------cccchhHHHH----------HHHhcccccCCccceeEEEeChHH
Confidence 9 99999999999999999999999 9999988776 9999999999 6799999998743
No 70
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.92 E-value=9.2e-26 Score=246.55 Aligned_cols=309 Identities=18% Similarity=0.202 Sum_probs=211.0
Q ss_pred hhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcCC-----------ccccccCCceehhhhHHHHHhhccccccC
Q 001729 29 MSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM-----------EPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (1020)
Q Consensus 29 ~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~~-----------~~IivtqPrrlaa~sva~rva~e~~~~lg 97 (1020)
+-+|+.+|+.+++|++++..|.||||||.++..++++... ...+++.|++.+|+|+++.+.+... .++
T Consensus 43 TlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~-~c~ 121 (569)
T KOG0346|consen 43 TLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVE-YCS 121 (569)
T ss_pred chhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHH-HHH
Confidence 4589999999999999999999999999888777765321 1467778999999999887654211 011
Q ss_pred ---ccccee--cc---ccccccccceEEeeechhhhHHHHHhc-cccceeEEEEeecccccccccceeehhhhhHhhccC
Q 001729 98 ---GEVGYH--IG---HSKHLSERSKIVFKTAGVLLDEMRDRG-LNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKN 168 (1020)
Q Consensus 98 ---~~Vgy~--i~---~~~~~~~~t~Iiv~Tpg~Ll~~l~~~~-l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~ 168 (1020)
..+... +. ....+.+.++|+|+||+.+++.+..+. ..+..++++|+|||+ -.+.-++-..+.+......+
T Consensus 122 k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEAD-LllsfGYeedlk~l~~~LPr 200 (569)
T KOG0346|consen 122 KDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEAD-LLLSFGYEEDLKKLRSHLPR 200 (569)
T ss_pred HhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhh-hhhhcccHHHHHHHHHhCCc
Confidence 000000 00 012235679999999999999998776 334489999999999 44444444444444444566
Q ss_pred CeEEEEeeccc--chhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCC
Q 001729 169 DLRVVLMSATA--DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSP 246 (1020)
Q Consensus 169 ~lkiIlmSATl--d~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 246 (1020)
..|-++||||+ |...+...|-. .|+. +......-. .+..+. .|.
T Consensus 201 ~~Q~~LmSATl~dDv~~LKkL~l~----nPvi-Lkl~e~el~-----------------------~~dqL~-Qy~----- 246 (569)
T KOG0346|consen 201 IYQCFLMSATLSDDVQALKKLFLH----NPVI-LKLTEGELP-----------------------NPDQLT-QYQ----- 246 (569)
T ss_pred hhhheeehhhhhhHHHHHHHHhcc----CCeE-EEeccccCC-----------------------Ccccce-EEE-----
Confidence 78999999998 55566666632 2232 221111000 000000 000
Q ss_pred cccccccChhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhc
Q 001729 247 SMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKS 326 (1020)
Q Consensus 247 ~~~~~~~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~ 326 (1020)
.... ..+.+-++..+ ..+. -..|++|||+|+.+.+.++.-.|... +++..+|.|.||..-|..+++.|..
T Consensus 247 --v~cs-e~DKflllyal-lKL~----LI~gKsliFVNtIdr~YrLkLfLeqF--GiksciLNseLP~NSR~Hii~QFNk 316 (569)
T KOG0346|consen 247 --VKCS-EEDKFLLLYAL-LKLR----LIRGKSLIFVNTIDRCYRLKLFLEQF--GIKSCILNSELPANSRCHIIEQFNK 316 (569)
T ss_pred --EEec-cchhHHHHHHH-HHHH----HhcCceEEEEechhhhHHHHHHHHHh--CcHhhhhcccccccchhhHHHHhhC
Confidence 0000 11111111111 1111 12479999999999999988888743 4778899999999999999999999
Q ss_pred cc-eEEEEecc-----------------------------------ccccccccceeEEeecccceeeeeecccccccee
Q 001729 327 HR-KVILATNI-----------------------------------AESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAE 370 (1020)
Q Consensus 327 gr-kVLVATni-----------------------------------ae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~ 370 (1020)
|- .||||||. +.+|||+..|..||| ||.|..+++|
T Consensus 317 G~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlN--------FD~P~t~~sY- 387 (569)
T KOG0346|consen 317 GLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLN--------FDFPETVTSY- 387 (569)
T ss_pred cceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeee--------cCCCCchHHH-
Confidence 98 99999991 248999999999999 9999977666
Q ss_pred eEEeehhHHHHhcCCCCcc-cCCeeEEeechh
Q 001729 371 LVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKS 401 (1020)
Q Consensus 371 ~~~iSkas~~QR~GRAGR~-~~G~c~rLys~~ 401 (1020)
+||+||++|. .+|.+..++.+.
T Consensus 388 ---------IHRvGRTaRg~n~GtalSfv~P~ 410 (569)
T KOG0346|consen 388 ---------IHRVGRTARGNNKGTALSFVSPK 410 (569)
T ss_pred ---------HHhccccccCCCCCceEEEecch
Confidence 9999999999 789999988764
No 71
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.92 E-value=1.5e-24 Score=248.26 Aligned_cols=310 Identities=15% Similarity=0.146 Sum_probs=176.8
Q ss_pred hHHHHHHHHhhcc--EEEEecCCCCCCcCChhhhhhhcCCccccccCCceehhhhHHHHHhhccc-------cccCcccc
Q 001729 31 LREKIVEKVLENR--VTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRN-------CELGGEVG 101 (1020)
Q Consensus 31 ~Q~eil~~i~~~~--~vII~apTGSGKTt~ip~~lle~~~~~IivtqPrrlaa~sva~rva~e~~-------~~lg~~Vg 101 (1020)
+|.++++++.+++ +++|++|||||||..+...++... .+.+++.|++.++.+.++++..... ..+....|
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~~-~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g 79 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHGE-NDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSK 79 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHcC-CCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecC
Confidence 5899999998775 589999999999987777666543 3567778999998888887766431 11111111
Q ss_pred eecc--------------cc--------ccccccceEEeeechhhhHHHHHh----cc----ccceeEEEEeeccccccc
Q 001729 102 YHIG--------------HS--------KHLSERSKIVFKTAGVLLDEMRDR----GL----NALKYKVIILDEVHERSV 151 (1020)
Q Consensus 102 y~i~--------------~~--------~~~~~~t~Iiv~Tpg~Ll~~l~~~----~l----~l~~~s~IIIDEaHER~l 151 (1020)
-... .+ ......+.|+++||++|...+... .. .+.++++|||||+|+.+.
T Consensus 80 ~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~~~ 159 (357)
T TIGR03158 80 ATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLYDA 159 (357)
T ss_pred CchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecccccCc
Confidence 1000 00 001235678888899987654321 10 124899999999997554
Q ss_pred ccc-eee---hhhhhHhhccCCeEEEEeecccchhhhhHHHhhcC-CcceEEEEEecCCCchhhHHHhhhHHHHHHHHhc
Q 001729 152 ESD-LVL---VCVKQLLLKKNDLRVVLMSATADITKYRDYFRDLG-RGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLG 226 (1020)
Q Consensus 152 ~~d-~ll---~~lk~ll~~~~~lkiIlmSATld~~~~~~~f~~~~-~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~ 226 (1020)
... .++ .....+.......++|+||||++.. +.+++...+ .+. ++..+++.. ..++-. .+......
T Consensus 160 ~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~-~~~~l~~~~~~~~--~~~~v~g~~--~~~~~~----~~~~~~~~ 230 (357)
T TIGR03158 160 KQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPA-LILRLQNAKQAGV--KIAPIDGEK--YQFPDN----PELEADNK 230 (357)
T ss_pred ccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHH-HHHHHHhccccCc--eeeeecCcc--cccCCC----hhhhcccc
Confidence 322 222 2222222223357999999999754 444443321 122 233333320 000000 00000000
Q ss_pred -CCccccccccccccCCCCCCcccccccChh-HHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceE
Q 001729 227 -VDHGMTSELSSLRYCSGPSPSMANAEIKPE-VHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFK 304 (1020)
Q Consensus 227 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~ 304 (1020)
.............+.. . ...... ...++ +.+....+..+ ++++|||+++.++++.++..|+....++.
T Consensus 231 ~~~~~~~~~~i~~~~~~--~-----~~~~~~~l~~l~-~~i~~~~~~~~--~~k~LIf~nt~~~~~~l~~~L~~~~~~~~ 300 (357)
T TIGR03158 231 TQSFRPVLPPVELELIP--A-----PDFKEEELSELA-EEVIERFRQLP--GERGAIILDSLDEVNRLSDLLQQQGLGDD 300 (357)
T ss_pred ccccceeccceEEEEEe--C-----CchhHHHHHHHH-HHHHHHHhccC--CCeEEEEECCHHHHHHHHHHHhhhCCCce
Confidence 0000000000000000 0 001111 11112 22222111111 46899999999999999999986544567
Q ss_pred EEEeecccchHHHHHHHHhhhccc-eEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhc
Q 001729 305 VHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRR 383 (1020)
Q Consensus 305 v~~lHs~l~~~er~~i~~~f~~gr-kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~ 383 (1020)
+..+||.+++.+|.+.. + +|||||+++|+|||||++ +|| ++ +. +..+|+||+
T Consensus 301 ~~~l~g~~~~~~R~~~~------~~~iLVaTdv~~rGiDi~~~-~vi---------~~-p~----------~~~~yiqR~ 353 (357)
T TIGR03158 301 IGRITGFAPKKDRERAM------QFDILLGTSTVDVGVDFKRD-WLI---------FS-AR----------DAAAFWQRL 353 (357)
T ss_pred EEeeecCCCHHHHHHhc------cCCEEEEecHHhcccCCCCc-eEE---------EC-CC----------CHHHHhhhc
Confidence 88999999999886542 4 999999999999999987 555 33 22 446779999
Q ss_pred CCCC
Q 001729 384 GRTG 387 (1020)
Q Consensus 384 GRAG 387 (1020)
||+|
T Consensus 354 GR~g 357 (357)
T TIGR03158 354 GRLG 357 (357)
T ss_pred ccCC
Confidence 9998
No 72
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=1e-24 Score=247.87 Aligned_cols=315 Identities=18% Similarity=0.235 Sum_probs=213.1
Q ss_pred hhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcCC----------ccccccCCceehhhhHHHHHhhccc-cccC
Q 001729 29 MSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM----------EPILCTQPRRFAVVAVAKMVAKGRN-CELG 97 (1020)
Q Consensus 29 ~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~~----------~~IivtqPrrlaa~sva~rva~e~~-~~lg 97 (1020)
++.|.++++.+..+++++.|||||||||+++..+++.... -+.+|+.|+|.+|.|++....+..- ..-+
T Consensus 160 t~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~ 239 (593)
T KOG0344|consen 160 TPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTS 239 (593)
T ss_pred CcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCc
Confidence 4568899999999999999999999999877777765422 1577888999999998887665431 1111
Q ss_pred -cccceecc------ccccccccceEEeeechhhhHHHHHhc--cccceeEEEEeecccccccccceeehhhhhHhh--c
Q 001729 98 -GEVGYHIG------HSKHLSERSKIVFKTAGVLLDEMRDRG--LNALKYKVIILDEVHERSVESDLVLVCVKQLLL--K 166 (1020)
Q Consensus 98 -~~Vgy~i~------~~~~~~~~t~Iiv~Tpg~Ll~~l~~~~--l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~--~ 166 (1020)
...+.... .........+|++.||-.+...+..+. +.+..+.++|+||++ +..+..++...+..++. .
T Consensus 240 ~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD-~lfe~~~f~~Qla~I~sac~ 318 (593)
T KOG0344|consen 240 LRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEAD-LLFEPEFFVEQLADIYSACQ 318 (593)
T ss_pred hhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHH-hhhChhhHHHHHHHHHHHhc
Confidence 11111100 111123467999999999998887654 455699999999999 66665233233333332 2
Q ss_pred cCCeEEEEeecccchhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCC
Q 001729 167 KNDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSP 246 (1020)
Q Consensus 167 ~~~lkiIlmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 246 (1020)
.+++++-++|||.+. ..++|..... ...+.++ +... ... .+.+.+.+- ++.
T Consensus 319 s~~i~~a~FSat~~~-~VEE~~~~i~-~~~~~vi-vg~~--~sa-------~~~V~Qelv-------------F~g---- 369 (593)
T KOG0344|consen 319 SPDIRVALFSATISV-YVEEWAELIK-SDLKRVI-VGLR--NSA-------NETVDQELV-------------FCG---- 369 (593)
T ss_pred CcchhhhhhhccccH-HHHHHHHHhh-ccceeEE-Eecc--hhH-------hhhhhhhhe-------------eee----
Confidence 478999999999753 3445543311 1111111 1110 000 000111110 000
Q ss_pred cccccccChhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhc
Q 001729 247 SMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKS 326 (1020)
Q Consensus 247 ~~~~~~~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~ 326 (1020)
......-.+..++ .... ..++|||+.+.+.+.++.+.|. ...++.|..+||..++.+|...++.|+.
T Consensus 370 ------se~~K~lA~rq~v---~~g~---~PP~lIfVQs~eRak~L~~~L~-~~~~i~v~vIh~e~~~~qrde~~~~FR~ 436 (593)
T KOG0344|consen 370 ------SEKGKLLALRQLV---ASGF---KPPVLIFVQSKERAKQLFEELE-IYDNINVDVIHGERSQKQRDETMERFRI 436 (593)
T ss_pred ------cchhHHHHHHHHH---hccC---CCCeEEEEecHHHHHHHHHHhh-hccCcceeeEecccchhHHHHHHHHHhc
Confidence 0001111112222 2222 3589999999999999999984 2566889999999999999999999999
Q ss_pred cc-eEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc-cCCeeEEeechhhcc
Q 001729 327 HR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (1020)
Q Consensus 327 gr-kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c~rLys~~~~~ 404 (1020)
|. .|++||+++++|||+-+|+.||+ ||.|. |..+|+||+||+||. +.|++|.+|++++..
T Consensus 437 g~IwvLicTdll~RGiDf~gvn~VIn--------yD~p~----------s~~syihrIGRtgRag~~g~Aitfytd~d~~ 498 (593)
T KOG0344|consen 437 GKIWVLICTDLLARGIDFKGVNLVIN--------YDFPQ----------SDLSYIHRIGRTGRAGRSGKAITFYTDQDMP 498 (593)
T ss_pred cCeeEEEehhhhhccccccCcceEEe--------cCCCc----------hhHHHHHHhhccCCCCCCcceEEEeccccch
Confidence 99 99999999999999999999999 99998 556679999999999 689999999985543
No 73
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=2.4e-24 Score=234.13 Aligned_cols=311 Identities=19% Similarity=0.277 Sum_probs=221.5
Q ss_pred hhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcCC-----ccccccCCceehhhhHHHHHhhccccccC----c
Q 001729 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM-----EPILCTQPRRFAVVAVAKMVAKGRNCELG----G 98 (1020)
Q Consensus 28 i~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~~-----~~IivtqPrrlaa~sva~rva~e~~~~lg----~ 98 (1020)
.+.+|+.++..+.++.++++.+.+|+|||.++...++...- ..+++..|+|.+|++..+. ...++...+ .
T Consensus 49 PSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v-~~~lg~~~~~~v~~ 127 (397)
T KOG0327|consen 49 PSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKV-VRALGDHMDVSVHA 127 (397)
T ss_pred chHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHH-HHhhhcccceeeee
Confidence 35678888888899999999999999999776666665432 2688899999999988843 333333222 2
Q ss_pred ccceecc--ccc-cccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhccCCeEEEEe
Q 001729 99 EVGYHIG--HSK-HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLM 175 (1020)
Q Consensus 99 ~Vgy~i~--~~~-~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlm 175 (1020)
.+|.... ... ......+|+++|||.++..+....+....+.++|+||++| ++..+|...+...+...+++.|++++
T Consensus 128 ~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDE-mLs~gfkdqI~~if~~lp~~vQv~l~ 206 (397)
T KOG0327|consen 128 CIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADE-MLSRGFKDQIYDIFQELPSDVQVVLL 206 (397)
T ss_pred ecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHh-hhccchHHHHHHHHHHcCcchhheee
Confidence 2332211 111 2234589999999999999877655555799999999996 45556776766666777889999999
Q ss_pred ecccchh--hhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCccccccc
Q 001729 176 SATADIT--KYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEI 253 (1020)
Q Consensus 176 SATld~~--~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (1020)
|||++.+ .+.+-|.. +++.+..-.. ..+ ++.+ .+-|....
T Consensus 207 SAT~p~~vl~vt~~f~~----~pv~i~vkk~---~lt-------l~gi---------------kq~~i~v~--------- 248 (397)
T KOG0327|consen 207 SATMPSDVLEVTKKFMR----EPVRILVKKD---ELT-------LEGI---------------KQFYINVE--------- 248 (397)
T ss_pred cccCcHHHHHHHHHhcc----CceEEEecch---hhh-------hhhe---------------eeeeeecc---------
Confidence 9998644 33343422 2232221110 000 0000 00000000
Q ss_pred ChhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc-eEEE
Q 001729 254 KPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVIL 332 (1020)
Q Consensus 254 ~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVLV 332 (1020)
+.+.. ..+..++.. -...+||++|++.+..+...|. ..+..+..+|+.|.+.+|..+++.|+.|. +|||
T Consensus 249 k~~k~----~~l~dl~~~----~~q~~if~nt~r~v~~l~~~L~--~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlI 318 (397)
T KOG0327|consen 249 KEEKL----DTLCDLYRR----VTQAVIFCNTRRKVDNLTDKLR--AHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLI 318 (397)
T ss_pred ccccc----cHHHHHHHh----hhcceEEecchhhHHHHHHHHh--hCCceEEEeecccchhhhhHHHHHhhcCCceEEe
Confidence 00011 222233331 2478999999999999999996 55688999999999999999999999998 9999
Q ss_pred EeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc-cCCeeEEeechhhcccc
Q 001729 333 ATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFGTL 406 (1020)
Q Consensus 333 ATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c~rLys~~~~~~l 406 (1020)
.|+.+++|+|+-.+..||+ ||.|.+.+.| .||+||+||. ++|..+.++++++...+
T Consensus 319 ttdl~argidv~~~slvin--------ydlP~~~~~y----------ihR~gr~gr~grkg~~in~v~~~d~~~l 375 (397)
T KOG0327|consen 319 TTDLLARGIDVQQVSLVVN--------YDLPARKENY----------IHRIGRAGRFGRKGVAINFVTEEDVRDL 375 (397)
T ss_pred eccccccccchhhcceeee--------eccccchhhh----------hhhcccccccCCCceeeeeehHhhHHHH
Confidence 9999999999999999999 9999876655 9999999999 79999999998765543
No 74
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.90 E-value=2.6e-23 Score=238.92 Aligned_cols=350 Identities=16% Similarity=0.204 Sum_probs=234.1
Q ss_pred CcchhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhh--cCCccccccCCceehhhhHHHHHhhccccccCcccce
Q 001729 25 SLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLA--ENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (1020)
Q Consensus 25 ~LPi~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle--~~~~~IivtqPrrlaa~sva~rva~e~~~~lg~~Vgy 102 (1020)
.+-+-++|..++..+.+++.|+|+|-|.+|||...--.|.. ...++||+|.|-..+..|-++.+-.|++ .||.
T Consensus 127 PF~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQRVIYTSPIKALSNQKYREl~~EF~-----DVGL 201 (1041)
T KOG0948|consen 127 PFTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQRVIYTSPIKALSNQKYRELLEEFK-----DVGL 201 (1041)
T ss_pred CcccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhcCeEEeeChhhhhcchhHHHHHHHhc-----ccce
Confidence 46688999999999999999999999999999543322222 2346899999988888888888877765 2565
Q ss_pred eccccccccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhccCCeEEEEeeccc-ch
Q 001729 103 HIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATA-DI 181 (1020)
Q Consensus 103 ~i~~~~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmSATl-d~ 181 (1020)
.. ++-..++++..+|||+++|..++..+.--+..+.+||+||+| .+-+.+-...+-..++...++.+.|++|||+ |+
T Consensus 202 MT-GDVTInP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIH-YMRDkERGVVWEETIIllP~~vr~VFLSATiPNA 279 (1041)
T KOG0948|consen 202 MT-GDVTINPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIH-YMRDKERGVVWEETIILLPDNVRFVFLSATIPNA 279 (1041)
T ss_pred ee-cceeeCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeeh-hccccccceeeeeeEEeccccceEEEEeccCCCH
Confidence 53 334457889999999999999888665445699999999999 3333333333334444557789999999997 89
Q ss_pred hhhhHHHhhcCCcceEEEEEecCCC---chhhHHHh--h---------hHHHH----HHHHhcCCccccc-cccccccCC
Q 001729 182 TKYRDYFRDLGRGERVEVLAIPSTN---QRTIFQRR--V---------SYLEQ----VTELLGVDHGMTS-ELSSLRYCS 242 (1020)
Q Consensus 182 ~~~~~~f~~~~~~~~v~v~~~p~~~---~~~~~~v~--v---------~yl~~----~~~~l~~~~~~~~-~~~~~~~~~ 242 (1020)
..|++|...+. ..|+.|++..-++ +...||.- - .|-++ ....+....+... .....+...
T Consensus 280 ~qFAeWI~~ih-kQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~~k 358 (1041)
T KOG0948|consen 280 RQFAEWICHIH-KQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKGRK 358 (1041)
T ss_pred HHHHHHHHHHh-cCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCcccccccccccc
Confidence 99999997753 3466666654332 22333310 0 01111 0011100000000 000000000
Q ss_pred CCCCcccccccChhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccc----------------------
Q 001729 243 GPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLS---------------------- 300 (1020)
Q Consensus 243 ~~~~~~~~~~~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~---------------------- 300 (1020)
+.. ........++ .+++..|..+. ..+++||.-++++||..+-.+.++.
T Consensus 359 G~~--~~~~~~~s~i----~kiVkmi~~~~---~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~Ls 429 (1041)
T KOG0948|consen 359 GGT--GGKGPGDSDI----YKIVKMIMERN---YLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLS 429 (1041)
T ss_pred CCc--CCCCCCcccH----HHHHHHHHhhc---CCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcC
Confidence 000 0001111122 34444444333 3599999999999998877665210
Q ss_pred ---c------------ceEEEEeecccchHHHHHHHHhhhccc-eEEEEeccccccccccceeEEeecccceeeeeeccc
Q 001729 301 ---S------------FFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNR 364 (1020)
Q Consensus 301 ---~------------~~~v~~lHs~l~~~er~~i~~~f~~gr-kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~ 364 (1020)
. .-.|.++||||-+--++.++-.|..|- |||+||.+...|+|+|.-++|. -..+
T Consensus 430 eeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvF----------T~~r 499 (1041)
T KOG0948|consen 430 EEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVF----------TAVR 499 (1041)
T ss_pred hhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEE----------eecc
Confidence 0 124788999999888888888899998 9999999999999999877765 2333
Q ss_pred cccceeeEEeehhHHHHhcCCCCcc---cCCeeEEeechh
Q 001729 365 KIDSAELVWVSQSQAEQRRGRTGRT---CDGQVYRLVTKS 401 (1020)
Q Consensus 365 ~~~~l~~~~iSkas~~QR~GRAGR~---~~G~c~rLys~~ 401 (1020)
+.+.-...|||-.+|+||.|||||. ..|+|+.++++.
T Consensus 500 KfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 500 KFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred ccCCcceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 4445567899999999999999998 579999999874
No 75
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.90 E-value=1e-22 Score=245.54 Aligned_cols=317 Identities=19% Similarity=0.216 Sum_probs=194.7
Q ss_pred ccCcchhhhHHHHHHHHhhc---cEEEEecCCCCCCcCChhhhhhhcCCccccccCCceehhhhHHHHHhhccccccCcc
Q 001729 23 FSSLPVMSLREKIVEKVLEN---RVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGE 99 (1020)
Q Consensus 23 r~~LPi~~~Q~eil~~i~~~---~~vII~apTGSGKTt~ip~~lle~~~~~IivtqPrrlaa~sva~rva~e~~~~lg~~ 99 (1020)
+....+++||.+++..+..+ +..||++|||+|||.+....+.. ..++++|++|+..++.|..+.+.+......+ .
T Consensus 251 ~~~~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~-l~k~tLILvps~~Lv~QW~~ef~~~~~l~~~-~ 328 (732)
T TIGR00603 251 KPTTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACT-VKKSCLVLCTSAVSVEQWKQQFKMWSTIDDS-Q 328 (732)
T ss_pred ccCCCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHH-hCCCEEEEeCcHHHHHHHHHHHHHhcCCCCc-e
Confidence 34566899999999998753 36899999999999766544433 3467888899999999988888765433222 2
Q ss_pred cceeccccc-cccccceEEeeechhhhHHHHH--------hccccceeEEEEeecccccccccceeehhhhhHhhccCCe
Q 001729 100 VGYHIGHSK-HLSERSKIVFKTAGVLLDEMRD--------RGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDL 170 (1020)
Q Consensus 100 Vgy~i~~~~-~~~~~t~Iiv~Tpg~Ll~~l~~--------~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~l 170 (1020)
++...+..+ .......|+|+|++++...... +.+....+++||+|||| +... ...+.++..-...
T Consensus 329 I~~~tg~~k~~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH-~lpA-----~~fr~il~~l~a~ 402 (732)
T TIGR00603 329 ICRFTSDAKERFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVH-VVPA-----AMFRRVLTIVQAH 402 (732)
T ss_pred EEEEecCcccccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccc-cccH-----HHHHHHHHhcCcC
Confidence 222212211 1123478999999988532110 11222378999999999 3322 2233333332334
Q ss_pred EEEEeecccc--hhhhhHHHhhcCCc-------------c--eEEE--EEecCCCchhhHHHhhhHHHHHHHHhcCCccc
Q 001729 171 RVVLMSATAD--ITKYRDYFRDLGRG-------------E--RVEV--LAIPSTNQRTIFQRRVSYLEQVTELLGVDHGM 231 (1020)
Q Consensus 171 kiIlmSATld--~~~~~~~f~~~~~~-------------~--~v~v--~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~ 231 (1020)
..+++|||+. .+....++.-+|.. . ++.. +.++... .....|+...
T Consensus 403 ~RLGLTATP~ReD~~~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~-----~~~~~yl~~~---------- 467 (732)
T TIGR00603 403 CKLGLTATLVREDDKITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTP-----EFYREYLREN---------- 467 (732)
T ss_pred cEEEEeecCcccCCchhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCH-----HHHHHHHHhc----------
Confidence 6799999983 22222222211110 0 0000 0011000 0000111100
Q ss_pred cccccccccCCCCCCcccccccChhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecc
Q 001729 232 TSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSS 311 (1020)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~ 311 (1020)
. ..........+.....+..++.. +.. .+.++|||+.....++.+++.|. +..+||+
T Consensus 468 -~-----------~~k~~l~~~np~K~~~~~~Li~~-he~---~g~kiLVF~~~~~~l~~~a~~L~-------~~~I~G~ 524 (732)
T TIGR00603 468 -S-----------RKRMLLYVMNPNKFRACQFLIRF-HEQ---RGDKIIVFSDNVFALKEYAIKLG-------KPFIYGP 524 (732)
T ss_pred -c-----------hhhhHHhhhChHHHHHHHHHHHH-Hhh---cCCeEEEEeCCHHHHHHHHHHcC-------CceEECC
Confidence 0 00000011122233333344432 221 24699999999999999988774 3458999
Q ss_pred cchHHHHHHHHhhhcc-c-eEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc
Q 001729 312 VDTEQALMAMKICKSH-R-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT 389 (1020)
Q Consensus 312 l~~~er~~i~~~f~~g-r-kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~ 389 (1020)
++..+|..+++.|+.+ . ++||+|+++.+|||+|++++||. ++.+.+ |+.++.||.||++|.
T Consensus 525 ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~--------~s~~~g---------S~~q~iQRlGRilR~ 587 (732)
T TIGR00603 525 TSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQ--------ISSHYG---------SRRQEAQRLGRILRA 587 (732)
T ss_pred CCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEE--------eCCCCC---------CHHHHHHHhcccccC
Confidence 9999999999999864 6 99999999999999999999998 676532 678889999999999
Q ss_pred cCC-ee-------EEeechhh
Q 001729 390 CDG-QV-------YRLVTKSF 402 (1020)
Q Consensus 390 ~~G-~c-------~rLys~~~ 402 (1020)
++| .+ |.|++++.
T Consensus 588 ~~~~~~~~~~A~fY~lVs~dT 608 (732)
T TIGR00603 588 KKGSDAEEYNAFFYSLVSKDT 608 (732)
T ss_pred CCCCccccccceEEEEecCCc
Confidence 643 33 88888653
No 76
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.90 E-value=2e-23 Score=226.99 Aligned_cols=322 Identities=17% Similarity=0.170 Sum_probs=214.8
Q ss_pred hhHHHHHHHH-hhccEEEEecCCCCCCc--CChhhhhhhcCCccccccCCceehhhhHHHHHhhcccccc---Cccccee
Q 001729 30 SLREKIVEKV-LENRVTLIVGETGCGKS--SQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCEL---GGEVGYH 103 (1020)
Q Consensus 30 ~~Q~eil~~i-~~~~~vII~apTGSGKT--t~ip~~lle~~~~~IivtqPrrlaa~sva~rva~e~~~~l---g~~Vgy~ 103 (1020)
+.|++++..+ ..+++|.|++|||+||| +|+|.++.+. ..||+.|.-.+.......+.. +..+. .....-.
T Consensus 23 ~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~~g---ITIV~SPLiALIkDQiDHL~~-LKVp~~SLNSKlSt~ 98 (641)
T KOG0352|consen 23 RLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVHGG---ITIVISPLIALIKDQIDHLKR-LKVPCESLNSKLSTV 98 (641)
T ss_pred hHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHhCC---eEEEehHHHHHHHHHHHHHHh-cCCchhHhcchhhHH
Confidence 5688888886 56789999999999999 5555554432 345556643333332322221 11111 1100000
Q ss_pred -----ccccccccccceEEeeechhhhHHHHHhcc----ccceeEEEEeecccccc-cccceeehhhh--hHhhccCCeE
Q 001729 104 -----IGHSKHLSERSKIVFKTAGVLLDEMRDRGL----NALKYKVIILDEVHERS-VESDLVLVCVK--QLLLKKNDLR 171 (1020)
Q Consensus 104 -----i~~~~~~~~~t~Iiv~Tpg~Ll~~l~~~~l----~l~~~s~IIIDEaHER~-l~~d~ll~~lk--~ll~~~~~lk 171 (1020)
+..-....+.++++|.||++.......+.+ +-..++++++||||.-+ +..||...+|+ .+..+.++..
T Consensus 99 ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~~vp 178 (641)
T KOG0352|consen 99 ERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVCPGVP 178 (641)
T ss_pred HHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhhHHhhCCCCc
Confidence 112233456789999999886433222111 11267999999999744 34477776654 3556678899
Q ss_pred EEEeecccchhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCccccc
Q 001729 172 VVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANA 251 (1020)
Q Consensus 172 iIlmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1020)
-+.++||.+++.-.+.|..+....||.+...|....+..|.+. |-+-+.+-++
T Consensus 179 wvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~--~K~~I~D~~~------------------------- 231 (641)
T KOG0352|consen 179 WVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNH--MKSFITDCLT------------------------- 231 (641)
T ss_pred eEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHH--HHHHhhhHhH-------------------------
Confidence 9999999999988888888877778888777765443333221 1111111111
Q ss_pred ccChhHHHHHHHhhh---hhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc
Q 001729 252 EIKPEVHKLIHDLVL---HIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR 328 (1020)
Q Consensus 252 ~~~~~~~~li~~ll~---~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr 328 (1020)
.+.+...+.+- ..........|--||+|.|++++|+++-.|. ..++....+|+||...||..+.+.+-++.
T Consensus 232 ----~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~--~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~ 305 (641)
T KOG0352|consen 232 ----VLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLE--IAGIPAMAYHAGLKKKERTEVQEKWMNNE 305 (641)
T ss_pred ----hHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhh--hcCcchHHHhcccccchhHHHHHHHhcCC
Confidence 00011111111 0011112224678999999999999999988 56688899999999999999999998887
Q ss_pred -eEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc-cCCeeEEeechhhcccc
Q 001729 329 -KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFGTL 406 (1020)
Q Consensus 329 -kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c~rLys~~~~~~l 406 (1020)
.||+||+...+|||-|+|++||+ ||++.++ |-|.|-.|||||. .+..|-..|++++.+.+
T Consensus 306 ~PvI~AT~SFGMGVDKp~VRFViH--------W~~~qn~----------AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i 367 (641)
T KOG0352|consen 306 IPVIAATVSFGMGVDKPDVRFVIH--------WSPSQNL----------AGYYQESGRAGRDGKRSYCRLYYSRQDKNAL 367 (641)
T ss_pred CCEEEEEeccccccCCcceeEEEe--------cCchhhh----------HHHHHhccccccCCCccceeeeecccchHHH
Confidence 99999999999999999999999 9998855 4559999999999 56778777888776543
No 77
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.89 E-value=3.2e-23 Score=248.48 Aligned_cols=417 Identities=17% Similarity=0.188 Sum_probs=246.8
Q ss_pred hhhhHHHHHHHHhh-ccEEEEecCCCCCCcCChhhhhhhcC---Cc----------cccccCCceehhhhHHHHHhhccc
Q 001729 28 VMSLREKIVEKVLE-NRVTLIVGETGCGKSSQVPQFLLAEN---ME----------PILCTQPRRFAVVAVAKMVAKGRN 93 (1020)
Q Consensus 28 i~~~Q~eil~~i~~-~~~vII~apTGSGKTt~ip~~lle~~---~~----------~IivtqPrrlaa~sva~rva~e~~ 93 (1020)
+..+|..+..+.+. ..++++|||||+|||-...+-+++.. .+ +|+++.|...+++.+...+++.+.
T Consensus 310 LNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla 389 (1674)
T KOG0951|consen 310 LNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLA 389 (1674)
T ss_pred hhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhcc
Confidence 66788888888764 47999999999999966555555431 11 799999999888887776655432
Q ss_pred cccCcccceeccccc---cccccceEEeeechhhhHHHHHh--ccccceeEEEEeecccccccccc-eeehhh----hhH
Q 001729 94 CELGGEVGYHIGHSK---HLSERSKIVFKTAGVLLDEMRDR--GLNALKYKVIILDEVHERSVESD-LVLVCV----KQL 163 (1020)
Q Consensus 94 ~~lg~~Vgy~i~~~~---~~~~~t~Iiv~Tpg~Ll~~l~~~--~l~l~~~s~IIIDEaHER~l~~d-~ll~~l----k~l 163 (1020)
.+|..|+-..+... .--..|+|+++||+..--.-+.+ .-...-|+++||||+|--.-+.+ .+..+. ++.
T Consensus 390 -~~GI~V~ElTgD~~l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLESIVaRt~r~s 468 (1674)
T KOG0951|consen 390 -PLGITVLELTGDSQLGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLESIVARTFRRS 468 (1674)
T ss_pred -ccCcEEEEecccccchhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHHHHHHHHHHHh
Confidence 35555554444322 22467999999999763332221 11223689999999992111111 222222 222
Q ss_pred hhccCCeEEEEeeccc-chhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCC
Q 001729 164 LLKKNDLRVVLMSATA-DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCS 242 (1020)
Q Consensus 164 l~~~~~lkiIlmSATl-d~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~ 242 (1020)
.......+++++|||+ |-++...|+.... -.+.+. +.+..+-.+...|..
T Consensus 469 es~~e~~RlVGLSATLPNy~DV~~Fl~v~~----~glf~f-------------------------d~syRpvPL~qq~Ig 519 (1674)
T KOG0951|consen 469 ESTEEGSRLVGLSATLPNYEDVASFLRVDP----EGLFYF-------------------------DSSYRPVPLKQQYIG 519 (1674)
T ss_pred hhcccCceeeeecccCCchhhhHHHhccCc----cccccc-------------------------CcccCcCCccceEec
Confidence 2234578999999997 6666666654210 000000 000011111111111
Q ss_pred C--CCCcccccccChhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccc--------------c-------
Q 001729 243 G--PSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKP--------------L------- 299 (1020)
Q Consensus 243 ~--~~~~~~~~~~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~--------------~------- 299 (1020)
. ..+......+....++ +++.++ +.++||||+.++++.-+.++.++. .
T Consensus 520 i~ek~~~~~~qamNe~~ye---KVm~~a------gk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eil 590 (1674)
T KOG0951|consen 520 ITEKKPLKRFQAMNEACYE---KVLEHA------GKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREIL 590 (1674)
T ss_pred cccCCchHHHHHHHHHHHH---HHHHhC------CCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhh
Confidence 0 0111011111112222 222222 136999999999988777766651 0
Q ss_pred --------------ccceEEEEeecccchHHHHHHHHhhhccc-eEEEEeccccccccccceeEEeecccceeeeeeccc
Q 001729 300 --------------SSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNR 364 (1020)
Q Consensus 300 --------------~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~ 364 (1020)
...+.+.++|+||+..+|..+++.|+.|. +|+|+|..+++|+++|+-+++|- ....||+..
T Consensus 591 rtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViik----gtqvy~pek 666 (1674)
T KOG0951|consen 591 RTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIK----GTQVYDPEK 666 (1674)
T ss_pred hhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEec----CccccCccc
Confidence 01357889999999999999999999998 99999999999999999988883 334588876
Q ss_pred cccceeeEEeehhHHHHhcCCCCccc-----CCeeEEeechhhc-ccccccCCc--ceehhhHhHHHHHhhccCccccCC
Q 001729 365 KIDSAELVWVSQSQAEQRRGRTGRTC-----DGQVYRLVTKSFF-GTLEDHECP--AILRLSLRLQVLLICCAESKAISD 436 (1020)
Q Consensus 365 ~~~~l~~~~iSkas~~QR~GRAGR~~-----~G~c~rLys~~~~-~~l~~~~~P--EI~r~~L~~~vL~l~~~~~~~l~~ 436 (1020)
+.- ..+|....+||.|||||.+ .|+.+.=+++-.| -++...+.| +-.-+.|...+-.-..+|.+.+.+
T Consensus 667 g~w----~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls~mn~qLpiesq~~~rl~d~lnaeiv~Gv~~~~d 742 (1674)
T KOG0951|consen 667 GRW----TELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSLMNQQLPIESQFVSRLADCLNAEIVLGVRSARD 742 (1674)
T ss_pred Ccc----ccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHHhhhhcCCChHHHHHHhhhhhhhhhhcchhhHHH
Confidence 532 3468899999999999993 4555544554332 233333332 222222221111001111111222
Q ss_pred hhHHHh------hhc-------------CCC----CccchhhHHHHHHHHhhhhhcCCCCccCccccchhcccccccc
Q 001729 437 PKVLLQ------KAL-------------DPP----YPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSF 491 (1020)
Q Consensus 437 ~~~~l~------~~l-------------dpP----~~~~i~~al~~L~~lgald~~~~~g~~~lT~lG~~~a~lpldp 491 (1020)
...++. +.+ |++ -.+.+..|...|.+.|.|..+...|..+.|++|++.+.+.+.-
T Consensus 743 ~~~wl~yTylyvRm~~~p~ly~~~~~~~d~~le~~r~~lvhsa~~ll~~~~li~yd~~s~~~~~telg~ias~yyi~~ 820 (1674)
T KOG0951|consen 743 AVDWLGYTYLYVRMVRNPTLYGVSPEASDRLLEQRRADLVHSAATLLDKAGLIKYDRKSGAIQATELGRIASSYYITH 820 (1674)
T ss_pred HHhhhcceeeEEeeccCchhccCCcccchHHHHHHHhhhHHHHHhhHhhcCccccccccCcccchhhccccceeeeec
Confidence 212210 001 111 1256888999999999997654457788999999999888743
No 78
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=2.8e-23 Score=226.35 Aligned_cols=311 Identities=22% Similarity=0.224 Sum_probs=219.0
Q ss_pred hhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcCCc------cccccCCceehhhhHHHHHhhc---cccccCc
Q 001729 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENME------PILCTQPRRFAVVAVAKMVAKG---RNCELGG 98 (1020)
Q Consensus 28 i~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~~~------~IivtqPrrlaa~sva~rva~e---~~~~lg~ 98 (1020)
.+++|.+-++.++++++++-.+-||||||..+..++++.... +.++..|+|.+|.|.-+.+++. .+....-
T Consensus 44 ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~ 123 (529)
T KOG0337|consen 44 PTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGTKLRQSL 123 (529)
T ss_pred CCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhccccchhhhh
Confidence 357888999999999999999999999998887777765321 5677778888888877766552 1111111
Q ss_pred ccceecccc---ccccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhccCCeEEEEe
Q 001729 99 EVGYHIGHS---KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLM 175 (1020)
Q Consensus 99 ~Vgy~i~~~---~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlm 175 (1020)
.+|+. ..+ .....+++|+++|||+++.....-.+.+..+.+||+||++ |....+|...+-+.+-+...+.+.++|
T Consensus 124 ~~ggD-~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEad-rlfemgfqeql~e~l~rl~~~~QTllf 201 (529)
T KOG0337|consen 124 LVGGD-SIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEAD-RLFEMGFQEQLHEILSRLPESRQTLLF 201 (529)
T ss_pred hcccc-hHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhh-HHHhhhhHHHHHHHHHhCCCcceEEEE
Confidence 23433 112 1235689999999999988765544667799999999999 888888877776766667778899999
Q ss_pred ecccchhhhhHHHhhcCCcceEEEE-EecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCcccccccC
Q 001729 176 SATADITKYRDYFRDLGRGERVEVL-AIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIK 254 (1020)
Q Consensus 176 SATld~~~~~~~f~~~~~~~~v~v~-~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (1020)
|||++.... ++- ..|...|+-|. .+.... .+. +...+.... .
T Consensus 202 Satlp~~lv-~fa-kaGl~~p~lVRldvetki---------------se~-----------lk~~f~~~~---------~ 244 (529)
T KOG0337|consen 202 SATLPRDLV-DFA-KAGLVPPVLVRLDVETKI---------------SEL-----------LKVRFFRVR---------K 244 (529)
T ss_pred eccCchhhH-HHH-HccCCCCceEEeehhhhc---------------chh-----------hhhheeeec---------c
Confidence 999874422 222 22333343332 111100 000 000000000 0
Q ss_pred hhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc-eEEEE
Q 001729 255 PEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILA 333 (1020)
Q Consensus 255 ~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVLVA 333 (1020)
.+....+..++..+.. .++.+||+++..+++-+...|+. .++.+..++|.|+++.|..-...|+.++ .++|.
T Consensus 245 a~K~aaLl~il~~~~~-----~~~t~vf~~tk~hve~~~~ll~~--~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvv 317 (529)
T KOG0337|consen 245 AEKEAALLSILGGRIK-----DKQTIVFVATKHHVEYVRGLLRD--FGGEGSDIYSSLDQEARKINGRDFRGRKTSILVV 317 (529)
T ss_pred HHHHHHHHHHHhcccc-----ccceeEEecccchHHHHHHHHHh--cCCCccccccccChHhhhhccccccCCccceEEE
Confidence 0111111122222211 25799999999999999999984 4577788899999999998899999999 99999
Q ss_pred eccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc-cCCeeEEeechhh
Q 001729 334 TNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSF 402 (1020)
Q Consensus 334 Tniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c~rLys~~~ 402 (1020)
|++|++|+|||...-||+ ||.+..-..+ .||.||+.|. +.|..|.++...+
T Consensus 318 TdvaaRG~diplldnvin--------yd~p~~~klF----------vhRVgr~aragrtg~aYs~V~~~~ 369 (529)
T KOG0337|consen 318 TDVAARGLDIPLLDNVIN--------YDFPPDDKLF----------VHRVGRVARAGRTGRAYSLVASTD 369 (529)
T ss_pred ehhhhccCCCcccccccc--------ccCCCCCceE----------EEEecchhhccccceEEEEEeccc
Confidence 999999999999999999 9998876666 8999999988 5899999987653
No 79
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.88 E-value=5.3e-22 Score=233.32 Aligned_cols=355 Identities=15% Similarity=0.186 Sum_probs=226.7
Q ss_pred cchhhhHHHHHHHHhhccEEEEecCCCCCCcCChh--hhhhhcCCccccccCCceehhhhHHHHHhhccccccCccccee
Q 001729 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVP--QFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYH 103 (1020)
Q Consensus 26 LPi~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip--~~lle~~~~~IivtqPrrlaa~sva~rva~e~~~~lg~~Vgy~ 103 (1020)
+-+-.+|.+++..+..+..|.|.|+|.+|||...- ..+......+.++|.|-..+..|-.+.+.+.++ . || .
T Consensus 296 FelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h~TR~iYTSPIKALSNQKfRDFk~tF~----D-vg-L 369 (1248)
T KOG0947|consen 296 FELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFKETFG----D-VG-L 369 (1248)
T ss_pred CCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhhccceEecchhhhhccchHHHHHHhcc----c-cc-e
Confidence 44667899999999999999999999999995432 223344556899999988877777777766544 2 45 3
Q ss_pred ccccccccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhccCCeEEEEeeccc-chh
Q 001729 104 IGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATA-DIT 182 (1020)
Q Consensus 104 i~~~~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmSATl-d~~ 182 (1020)
+.++-+..+.+.+++||+++|..++.++.--+.++..||+||+| ..-+.+-...+-..++...+++++|++|||+ |..
T Consensus 370 lTGDvqinPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVH-YiND~eRGvVWEEViIMlP~HV~~IlLSATVPN~~ 448 (1248)
T KOG0947|consen 370 LTGDVQINPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVH-YINDVERGVVWEEVIIMLPRHVNFILLSATVPNTL 448 (1248)
T ss_pred eecceeeCCCcceEeehHHHHHHHHhcccchhhccceEEEeeee-ecccccccccceeeeeeccccceEEEEeccCCChH
Confidence 35666778899999999999999988765445699999999999 2222222222233455667889999999996 889
Q ss_pred hhhHHHhhcCCcceEEEEEecCCC---------chhhHHHhh---hHHH----HHHHHhcC-Ccccc----ccc---ccc
Q 001729 183 KYRDYFRDLGRGERVEVLAIPSTN---------QRTIFQRRV---SYLE----QVTELLGV-DHGMT----SEL---SSL 238 (1020)
Q Consensus 183 ~~~~~f~~~~~~~~v~v~~~p~~~---------~~~~~~v~v---~yl~----~~~~~l~~-~~~~~----~~~---~~~ 238 (1020)
.|++|.+.... ..+-|+..+.++ ....+++.. .++. +..+.++. ..... ... -..
T Consensus 449 EFA~WIGRtK~-K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~rgs~ 527 (1248)
T KOG0947|consen 449 EFADWIGRTKQ-KTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGGRGSQ 527 (1248)
T ss_pred HHHHHhhhccC-ceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhccccccccccccccccccccc
Confidence 99999987422 222222221111 011121100 0111 11111100 00000 000 000
Q ss_pred c-cCCCCCCcc--cccccChhH--HHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccc-------------
Q 001729 239 R-YCSGPSPSM--ANAEIKPEV--HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLS------------- 300 (1020)
Q Consensus 239 ~-~~~~~~~~~--~~~~~~~~~--~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~------------- 300 (1020)
+ ...+....- ....+.... ...+.+++.++....- =+++|||-+++.|++.++.|....
T Consensus 528 ~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~l---LP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lf 604 (1248)
T KOG0947|consen 528 KRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNL---LPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLF 604 (1248)
T ss_pred ccCCcCCCCCCCcccccccccccccchHHHHHHHHhhccc---CceEEEEEccccHHHHHHHHhccCcccchhHHHHHHH
Confidence 0 000000000 000000000 1234566666665443 389999999999998888775210
Q ss_pred ------------c------------ceEEEEeecccchHHHHHHHHhhhccc-eEEEEeccccccccccceeEEeecccc
Q 001729 301 ------------S------------FFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRS 355 (1020)
Q Consensus 301 ------------~------------~~~v~~lHs~l~~~er~~i~~~f~~gr-kVLVATniae~GIdIp~V~~VId~G~~ 355 (1020)
. .-.+.++|||+-+--+.-++-.|..|- |||+||.+.++|||+|.-.+|+++ +.
T Consensus 605 l~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~S-l~ 683 (1248)
T KOG0947|consen 605 LSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVFSS-LR 683 (1248)
T ss_pred HHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEeee-hh
Confidence 0 014788999999988888889998887 999999999999999998888863 22
Q ss_pred eeeeeeccccccceeeEEeehhHHHHhcCCCCcc---cCCeeEEeechh
Q 001729 356 LQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT---CDGQVYRLVTKS 401 (1020)
Q Consensus 356 k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~---~~G~c~rLys~~ 401 (1020)
| +| .-....+...+|.||+|||||. ..|.++.+....
T Consensus 684 K---hD------G~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 684 K---HD------GNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred h---cc------CcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 2 22 2233445788999999999998 479998887654
No 80
>PRK09401 reverse gyrase; Reviewed
Probab=99.88 E-value=2.1e-22 Score=257.28 Aligned_cols=292 Identities=18% Similarity=0.189 Sum_probs=179.7
Q ss_pred cchhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhh--hhcCCccccccCCceehhhhHHHHHhhccccccCccccee
Q 001729 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFL--LAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYH 103 (1020)
Q Consensus 26 LPi~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~l--le~~~~~IivtqPrrlaa~sva~rva~e~~~~lg~~Vgy~ 103 (1020)
..++++|.++++.++.+++++++||||||||+.+...+ +.....+++++.|+|.++.|+++++..... ..+..+...
T Consensus 79 ~~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l~~-~~~~~~~~~ 157 (1176)
T PRK09401 79 SKPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKFGE-KVGCGVKIL 157 (1176)
T ss_pred CCCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHHhh-hcCceEEEE
Confidence 36789999999999999999999999999995322211 122235788999999999999998866422 222222111
Q ss_pred cccc-----------cc-ccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccc-----------cceeehhh
Q 001729 104 IGHS-----------KH-LSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVE-----------SDLVLVCV 160 (1020)
Q Consensus 104 i~~~-----------~~-~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~-----------~d~ll~~l 160 (1020)
.+.. .. .....+|+|+|||.|.+.+. .+...++++||||||| +.++ .+|....+
T Consensus 158 ~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD-~~L~~~k~id~~l~~lGF~~~~i 234 (1176)
T PRK09401 158 YYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVD-AVLKSSKNIDKLLYLLGFSEEDI 234 (1176)
T ss_pred EccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChH-HhhhcccchhhHHHhCCCCHHHH
Confidence 1111 01 12458999999999998765 2334469999999999 4443 23321111
Q ss_pred hhHhhc-------------------------cCCeEEEEeecccchhhhh-HHHhhcCCcceEEEEEecCCCchhhHHHh
Q 001729 161 KQLLLK-------------------------KNDLRVVLMSATADITKYR-DYFRDLGRGERVEVLAIPSTNQRTIFQRR 214 (1020)
Q Consensus 161 k~ll~~-------------------------~~~lkiIlmSATld~~~~~-~~f~~~~~~~~v~v~~~p~~~~~~~~~v~ 214 (1020)
+.++.. ..+.+++++|||+++.... .+|..+- .+++ ... ..
T Consensus 235 ~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll---~~~v---~~~-~~------ 301 (1176)
T PRK09401 235 EKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELL---GFEV---GSP-VF------ 301 (1176)
T ss_pred HHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccc---eEEe---cCc-cc------
Confidence 111110 1157899999998754322 2333210 0111 100 00
Q ss_pred hhHHHHHHHHhcCCccccccccccccCCCCCCcccccccChhHHHHHHHhhhhhccCCccccccEEEEecchhh---HHH
Q 001729 215 VSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYA---LEQ 291 (1020)
Q Consensus 215 v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~---ie~ 291 (1020)
++..+ ...|. ... ...+.+.+++..+ ++.+||||++... ++.
T Consensus 302 --~~rnI---------------~~~yi--------~~~---~k~~~L~~ll~~l-------~~~~LIFv~t~~~~~~ae~ 346 (1176)
T PRK09401 302 --YLRNI---------------VDSYI--------VDE---DSVEKLVELVKRL-------GDGGLIFVPSDKGKEYAEE 346 (1176)
T ss_pred --ccCCc---------------eEEEE--------Ecc---cHHHHHHHHHHhc-------CCCEEEEEecccChHHHHH
Confidence 00000 00000 000 1122223333221 2468999999777 999
Q ss_pred hhhhccccccceEEEEeecccchHHHHHHHHhhhccc-eEEEE----eccccccccccc-eeEEeecccceeeeeecccc
Q 001729 292 QWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILA----TNIAESSVTIPK-VAYVIDSCRSLQVFWDVNRK 365 (1020)
Q Consensus 292 l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVLVA----Tniae~GIdIp~-V~~VId~G~~k~~~yd~~~~ 365 (1020)
+++.|.. .++.+..+||+| + +.++.|++|+ +|||| ||++++|||+|+ |+|||+.|..+.++ ... .
T Consensus 347 l~~~L~~--~gi~v~~~hg~l---~--~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~-~~~-~ 417 (1176)
T PRK09401 347 LAEYLED--LGINAELAISGF---E--RKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKF-SLE-E 417 (1176)
T ss_pred HHHHHHH--CCCcEEEEeCcH---H--HHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEE-ecc-c
Confidence 9999984 468999999999 2 2359999999 99999 699999999999 89999944444322 100 1
Q ss_pred ccceeeEEeehhHHHHhcCCCCc
Q 001729 366 IDSAELVWVSQSQAEQRRGRTGR 388 (1020)
Q Consensus 366 ~~~l~~~~iSkas~~QR~GRAGR 388 (1020)
- ..+.+|.||+-.
T Consensus 418 ~----------~~~~~~~~r~~~ 430 (1176)
T PRK09401 418 E----------LAPPFLLLRLLS 430 (1176)
T ss_pred c----------ccCHHHHHHHHh
Confidence 1 234789998753
No 81
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.87 E-value=2.5e-22 Score=249.52 Aligned_cols=323 Identities=19% Similarity=0.187 Sum_probs=209.8
Q ss_pred CcchhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcCC----ccccccCCceehhhhHHHHHhhccccccCccc
Q 001729 25 SLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM----EPILCTQPRRFAVVAVAKMVAKGRNCELGGEV 100 (1020)
Q Consensus 25 ~LPi~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~~----~~IivtqPrrlaa~sva~rva~e~~~~lg~~V 100 (1020)
...+|++|.++++.+.++++|||+.+||||||..+..+|++... .+.+++-|+..+|...++++.+.... +|..|
T Consensus 68 ~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~-~~~~v 146 (851)
T COG1205 68 IERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELISD-LPGKV 146 (851)
T ss_pred cccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHh-CCCcc
Confidence 34499999999999999999999999999999888888887644 35688889999999999988775442 22222
Q ss_pred ceec-----ccccc---ccccceEEeeechhhhHHHHHhc----cccceeEEEEeecccc-cccccceeehhhhhHhhc-
Q 001729 101 GYHI-----GHSKH---LSERSKIVFKTAGVLLDEMRDRG----LNALKYKVIILDEVHE-RSVESDLVLVCVKQLLLK- 166 (1020)
Q Consensus 101 gy~i-----~~~~~---~~~~t~Iiv~Tpg~Ll~~l~~~~----l~l~~~s~IIIDEaHE-R~l~~d~ll~~lk~ll~~- 166 (1020)
+..+ ..+.. ....++|+++||.||-..+.... ..+.++++||+||+|- |+...--+..++|+++..
T Consensus 147 ~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~~ 226 (851)
T COG1205 147 TFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRRLLRRL 226 (851)
T ss_pred eeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHHHHHHHH
Confidence 2221 11111 35679999999999988554221 1123799999999994 444443344455665543
Q ss_pred ---cCCeEEEEeeccc--chhhhhHHHhhcCCcceEEE-EEecCCCchhhHHHhhhHHHHHHHHhcCCcccccccccccc
Q 001729 167 ---KNDLRVVLMSATA--DITKYRDYFRDLGRGERVEV-LAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRY 240 (1020)
Q Consensus 167 ---~~~lkiIlmSATl--d~~~~~~~f~~~~~~~~v~v-~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~ 240 (1020)
..++++|.+|||+ +.+...++++.. .++ +.-.+.+..... + +. +
T Consensus 227 ~~~~~~~q~i~~SAT~~np~e~~~~l~~~~-----f~~~v~~~g~~~~~~~-~-~~-----------------------~ 276 (851)
T COG1205 227 RRYGSPLQIICTSATLANPGEFAEELFGRD-----FEVPVDEDGSPRGLRY-F-VR-----------------------R 276 (851)
T ss_pred hccCCCceEEEEeccccChHHHHHHhcCCc-----ceeeccCCCCCCCceE-E-EE-----------------------e
Confidence 3479999999998 444555555431 111 111111111000 0 00 0
Q ss_pred CCCCCCcccccccChhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhcc----ccc--cceEEEEeecccch
Q 001729 241 CSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMK----PLS--SFFKVHILHSSVDT 314 (1020)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~----~~~--~~~~v~~lHs~l~~ 314 (1020)
.. +....... +..........++.....+ +-++|+|+.+++.++.+..... ..+ ....+..+++++..
T Consensus 277 ~p-~~~~~~~~-~r~s~~~~~~~~~~~~~~~----~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~ 350 (851)
T COG1205 277 EP-PIRELAES-IRRSALAELATLAALLVRN----GIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHR 350 (851)
T ss_pred CC-cchhhhhh-cccchHHHHHHHHHHHHHc----CceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCH
Confidence 00 00000000 0111111111222222222 3489999999999998863322 111 12357889999999
Q ss_pred HHHHHHHHhhhccc-eEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCccc-CC
Q 001729 315 EQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DG 392 (1020)
Q Consensus 315 ~er~~i~~~f~~gr-kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~-~G 392 (1020)
++|.+++..|+.|+ +++++||.+|-||||.++..||..|+. . .|..+++||+|||||.. .+
T Consensus 351 ~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P--------~---------~s~~~~~Q~~GRaGR~~~~~ 413 (851)
T COG1205 351 EERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYP--------G---------VSVLSFRQRAGRAGRRGQES 413 (851)
T ss_pred HHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCC--------C---------chHHHHHHhhhhccCCCCCc
Confidence 99999999999999 999999999999999999999985542 1 15577899999999995 66
Q ss_pred eeEEeechh
Q 001729 393 QVYRLVTKS 401 (1020)
Q Consensus 393 ~c~rLys~~ 401 (1020)
..+..+..+
T Consensus 414 l~~~v~~~~ 422 (851)
T COG1205 414 LVLVVLRSD 422 (851)
T ss_pred eEEEEeCCC
Confidence 666665543
No 82
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.87 E-value=3.4e-22 Score=245.56 Aligned_cols=325 Identities=16% Similarity=0.126 Sum_probs=195.1
Q ss_pred cCcchhhhHHHHHHHHhhc---cEEEEecCCCCCCcCChhhhhhhc--CCccccccCCceehhhhHHHHHhhccccccCc
Q 001729 24 SSLPVMSLREKIVEKVLEN---RVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPRRFAVVAVAKMVAKGRNCELGG 98 (1020)
Q Consensus 24 ~~LPi~~~Q~eil~~i~~~---~~vII~apTGSGKTt~ip~~lle~--~~~~IivtqPrrlaa~sva~rva~e~~~~lg~ 98 (1020)
....+++.|.++++.+.++ +++++.|+||||||..+...+.+. ...+++++.|++.++.|+.+++.+.++..+..
T Consensus 141 ~~~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~ 220 (679)
T PRK05580 141 EPPTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAV 220 (679)
T ss_pred CCCCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEE
Confidence 3456899999999999874 789999999999997766554332 12468888999999999999998866644332
Q ss_pred ccceeccc------cccccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehh-hh---hHhhccC
Q 001729 99 EVGYHIGH------SKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVC-VK---QLLLKKN 168 (1020)
Q Consensus 99 ~Vgy~i~~------~~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~-lk---~ll~~~~ 168 (1020)
..|..... ........+|+|+|++.+. .++.++++|||||+|+-+...+-...+ .+ .+.....
T Consensus 221 ~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~~ 293 (679)
T PRK05580 221 LHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKLE 293 (679)
T ss_pred EECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHhhcc
Confidence 22211111 1112346799999998764 234588999999999644433211111 12 2223456
Q ss_pred CeEEEEeecccchhhhhHHHhhcCCcceEEEEEecCCCchhhHH-HhhhHHHHHHHHhcCCccccccccccccCCCCCCc
Q 001729 169 DLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQ-RRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPS 247 (1020)
Q Consensus 169 ~lkiIlmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~-v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 247 (1020)
+.++|++|||++.+.+.....+ ....+..+.+..+...| +.+.-+.+ ... .
T Consensus 294 ~~~~il~SATps~~s~~~~~~g-----~~~~~~l~~r~~~~~~p~v~~id~~~---~~~----------------~---- 345 (679)
T PRK05580 294 NIPVVLGSATPSLESLANAQQG-----RYRLLRLTKRAGGARLPEVEIIDMRE---LLR----------------G---- 345 (679)
T ss_pred CCCEEEEcCCCCHHHHHHHhcc-----ceeEEEeccccccCCCCeEEEEechh---hhh----------------h----
Confidence 7899999999887766554321 12222222211111111 00000000 000 0
Q ss_pred ccccccChhHHHHHHHhhhhhccCCccccccEEEEecchh----------------------------------------
Q 001729 248 MANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYY---------------------------------------- 287 (1020)
Q Consensus 248 ~~~~~~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~---------------------------------------- 287 (1020)
.....+.....+.+.+.+ . .++++|||+|.+.
T Consensus 346 ~~~~~ls~~l~~~i~~~l---~-----~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~ 417 (679)
T PRK05580 346 ENGSFLSPPLLEAIKQRL---E-----RGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQ 417 (679)
T ss_pred cccCCCCHHHHHHHHHHH---H-----cCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCC
Confidence 000011122222222211 0 1235666666422
Q ss_pred --------------------hHHHhhhhccccccceEEEEeecccc--hHHHHHHHHhhhccc-eEEEEecccccccccc
Q 001729 288 --------------------ALEQQWHLMKPLSSFFKVHILHSSVD--TEQALMAMKICKSHR-KVILATNIAESSVTIP 344 (1020)
Q Consensus 288 --------------------~ie~l~~~L~~~~~~~~v~~lHs~l~--~~er~~i~~~f~~gr-kVLVATniae~GIdIp 344 (1020)
.++.+.+.|....++..+..+|+++. .+++..+++.|++|+ +|||+|+++++|+|+|
T Consensus 418 ~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p 497 (679)
T PRK05580 418 EPIPKACPECGSTDLVPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFP 497 (679)
T ss_pred CCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCC
Confidence 23444555554445678899999986 457888999999998 9999999999999999
Q ss_pred ceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc-cCCeeEEe
Q 001729 345 KVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRL 397 (1020)
Q Consensus 345 ~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c~rL 397 (1020)
+|..|+-.. .|.......+....-.-+.+.|++|||||. .+|.++..
T Consensus 498 ~v~lV~il~------aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiq 545 (679)
T PRK05580 498 NVTLVGVLD------ADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQ 545 (679)
T ss_pred CcCEEEEEc------CchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEE
Confidence 999985200 444433333322222235679999999996 78888843
No 83
>PRK14701 reverse gyrase; Provisional
Probab=99.86 E-value=5.3e-22 Score=258.35 Aligned_cols=311 Identities=15% Similarity=0.188 Sum_probs=188.5
Q ss_pred chhhhHHHHHHHHhhccEEEEecCCCCCCcCCh--hhhhhhcCCccccccCCceehhhhHHHHHhhcccc-ccCccccee
Q 001729 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQV--PQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNC-ELGGEVGYH 103 (1020)
Q Consensus 27 Pi~~~Q~eil~~i~~~~~vII~apTGSGKTt~i--p~~lle~~~~~IivtqPrrlaa~sva~rva~e~~~-~lg~~Vgy~ 103 (1020)
..+++|.++++.+.++++++++||||||||+.+ +...+.....+++++.|++.++.|+++.+...... .++..+.+.
T Consensus 79 ~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~ 158 (1638)
T PRK14701 79 EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYY 158 (1638)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEE
Confidence 478899999999999999999999999999722 22222222346888999999999998887653211 112222221
Q ss_pred ccccc----------cccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccc-----------cceeehhhhh
Q 001729 104 IGHSK----------HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVE-----------SDLVLVCVKQ 162 (1020)
Q Consensus 104 i~~~~----------~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~-----------~d~ll~~lk~ 162 (1020)
.+..+ ....+.+|+|+|||.|.+.+..- ...++++|||||||. .+. .+|...+...
T Consensus 159 ~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~~~~i~~iVVDEAD~-ml~~~knid~~L~llGF~~e~~~~ 235 (1638)
T PRK14701 159 HSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--KHLKFDFIFVDDVDA-FLKASKNIDRSLQLLGFYEEIIEK 235 (1638)
T ss_pred eCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--hhCCCCEEEEECcee-ccccccccchhhhcCCChHHHHHH
Confidence 11110 11235899999999988765532 114789999999994 332 2443333220
Q ss_pred ---Hh----------------------hc-cCCeE-EEEeecccch-hhhhHHHhhcCCcceEEEEEecCCCchhhHHHh
Q 001729 163 ---LL----------------------LK-KNDLR-VVLMSATADI-TKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRR 214 (1020)
Q Consensus 163 ---ll----------------------~~-~~~lk-iIlmSATld~-~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~ 214 (1020)
++ .. ....+ ++++|||+.. .....+|..+ ..+ .+... ......+.
T Consensus 236 ~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~-----l~f-~v~~~-~~~lr~i~ 308 (1638)
T PRK14701 236 AWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYREL-----LGF-EVGSG-RSALRNIV 308 (1638)
T ss_pred HHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhcC-----eEE-EecCC-CCCCCCcE
Confidence 11 01 12334 6779999865 2344555431 111 11110 00000000
Q ss_pred hhHHHHHHHHhcCCccccccccccccCCCCCCcccccccChhHHHHHHHhhhhhccCCccccccEEEEecchhhH---HH
Q 001729 215 VSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYAL---EQ 291 (1020)
Q Consensus 215 v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~i---e~ 291 (1020)
..|. . ........+.+++.. . +...||||++++.+ +.
T Consensus 309 -----------------------~~yi--------~--~~~~~k~~L~~ll~~----~---g~~gIVF~~t~~~~e~ae~ 348 (1638)
T PRK14701 309 -----------------------DVYL--------N--PEKIIKEHVRELLKK----L---GKGGLIFVPIDEGAEKAEE 348 (1638)
T ss_pred -----------------------EEEE--------E--CCHHHHHHHHHHHHh----C---CCCeEEEEeccccchHHHH
Confidence 0000 0 001111222233321 1 24689999998764 78
Q ss_pred hhhhccccccceEEEEeecccchHHHHHHHHhhhccc-eEEEEe----ccccccccccc-eeEEeecccceeeeeeccc-
Q 001729 292 QWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILAT----NIAESSVTIPK-VAYVIDSCRSLQVFWDVNR- 364 (1020)
Q Consensus 292 l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVLVAT----niae~GIdIp~-V~~VId~G~~k~~~yd~~~- 364 (1020)
+++.|.. .++.+..+||+ |...++.|++|+ +||||| +++++|||+|+ |+|||+ ||.|.
T Consensus 349 la~~L~~--~Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~--------~~~Pk~ 413 (1638)
T PRK14701 349 IEKYLLE--DGFKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVF--------YGVPKF 413 (1638)
T ss_pred HHHHHHH--CCCeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEE--------eCCCCC
Confidence 8999984 56899999995 778899999999 999999 59999999999 999999 55555
Q ss_pred --cccceeeEE---eehhHHHHhcCCCCcc-cCCeeEEeechhh
Q 001729 365 --KIDSAELVW---VSQSQAEQRRGRTGRT-CDGQVYRLVTKSF 402 (1020)
Q Consensus 365 --~~~~l~~~~---iSkas~~QR~GRAGR~-~~G~c~rLys~~~ 402 (1020)
+++.+.... .......++.|||||. .++.++..+..+.
T Consensus 414 ~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~ 457 (1638)
T PRK14701 414 RFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGVLDVFPED 457 (1638)
T ss_pred CcchhhcccchhhhhcchHHHHHhhhhcccCCcchhHHHhHHHH
Confidence 333221110 0023356788999998 4677765554443
No 84
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.86 E-value=1.7e-21 Score=238.73 Aligned_cols=352 Identities=14% Similarity=0.183 Sum_probs=229.3
Q ss_pred cCcchhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhh--hcCCccccccCCceehhhhHHHHHhhccccccCcccc
Q 001729 24 SSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLL--AENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (1020)
Q Consensus 24 ~~LPi~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~ll--e~~~~~IivtqPrrlaa~sva~rva~e~~~~lg~~Vg 101 (1020)
-...+.++|++++..|..+..|+|+||||||||...--.+. -...+++++|.|...+..|....+...++.- ...||
T Consensus 116 ~~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~qrviYTsPIKALsNQKyrdl~~~fgdv-~~~vG 194 (1041)
T COG4581 116 YPFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTSPIKALSNQKYRDLLAKFGDV-ADMVG 194 (1041)
T ss_pred CCCCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCCceEeccchhhhhhhHHHHHHHHhhhh-hhhcc
Confidence 45778899999999999999999999999999943222221 1223469999999999999999888877643 34456
Q ss_pred eeccccccccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhccCCeEEEEeeccc-c
Q 001729 102 YHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATA-D 180 (1020)
Q Consensus 102 y~i~~~~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmSATl-d 180 (1020)
... .+-..++++.+++||+++|.+++..+...+.++..||+||+| -.-+.+-....-..++.....+++|+||||+ |
T Consensus 195 L~T-GDv~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvH-yi~D~eRG~VWEE~Ii~lP~~v~~v~LSATv~N 272 (1041)
T COG4581 195 LMT-GDVSINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVH-YIGDRERGVVWEEVIILLPDHVRFVFLSATVPN 272 (1041)
T ss_pred cee-cceeeCCCCceEEeeHHHHHHHhccCcccccccceEEEEeee-eccccccchhHHHHHHhcCCCCcEEEEeCCCCC
Confidence 653 344457889999999999999988775566699999999999 3333333333334455667778999999997 9
Q ss_pred hhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHH--HHHHhcCCcc----c---cccccccc------------
Q 001729 181 ITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQ--VTELLGVDHG----M---TSELSSLR------------ 239 (1020)
Q Consensus 181 ~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~--~~~~l~~~~~----~---~~~~~~~~------------ 239 (1020)
++.|..|++... ..++.++....++... ..++... +...+..... . ........
T Consensus 273 ~~EF~~Wi~~~~-~~~~~vv~t~~RpvPL----~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~ 347 (1041)
T COG4581 273 AEEFAEWIQRVH-SQPIHVVSTEHRPVPL----EHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDV 347 (1041)
T ss_pred HHHHHHHHHhcc-CCCeEEEeecCCCCCe----EEEEecCCceeeeecccccchhhcchhhhhhhhccchhccccCcccc
Confidence 999999998643 4455555544432211 1111000 0000000000 0 00000000
Q ss_pred --cCCCCCCcccccccChhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhcccc------------------
Q 001729 240 --YCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL------------------ 299 (1020)
Q Consensus 240 --~~~~~~~~~~~~~~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~------------------ 299 (1020)
+............... ...+++..+.... .-++++|+-++..|+..+..+...
T Consensus 348 ~~~a~~~~~~~~~~~~~~----~~~~iv~~l~~~~---~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~ 420 (1041)
T COG4581 348 GRYARRTKALRGSAKGPA----GRPEIVNKLDKDN---LLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDH 420 (1041)
T ss_pred ccccccccccCCcccccc----cchHHHhhhhhhc---CCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHH
Confidence 0000000000000000 0012333333322 348999999999988776655410
Q ss_pred --------ccce-------------EEEEeecccchHHHHHHHHhhhccc-eEEEEeccccccccccceeEEeeccccee
Q 001729 300 --------SSFF-------------KVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQ 357 (1020)
Q Consensus 300 --------~~~~-------------~v~~lHs~l~~~er~~i~~~f~~gr-kVLVATniae~GIdIp~V~~VId~G~~k~ 357 (1020)
..++ .+.++|++|-+..+..+...|..|- ||++||.+.+.|+|+|.-++|+ +++.|
T Consensus 421 ~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~-~~l~K- 498 (1041)
T COG4581 421 AIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVF-TSLSK- 498 (1041)
T ss_pred HHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceee-eeeEE-
Confidence 0001 2557899999999999999999888 9999999999999999776666 45544
Q ss_pred eeeeccccccceeeEEeehhHHHHhcCCCCcc---cCCeeEEeech
Q 001729 358 VFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT---CDGQVYRLVTK 400 (1020)
Q Consensus 358 ~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~---~~G~c~rLys~ 400 (1020)
+| .-...|+|..+|.|+.|||||. ..|.++.+..+
T Consensus 499 --~d------G~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 499 --FD------GNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred --ec------CCceeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 44 2346789999999999999999 47999988543
No 85
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.86 E-value=1.9e-20 Score=219.96 Aligned_cols=322 Identities=18% Similarity=0.179 Sum_probs=194.9
Q ss_pred ccCcchhhhHHHHHHHHhh----ccEEEEecCCCCCCcCChhhhhhhcCCccccccCCceehhhhHHHHHhhccccccCc
Q 001729 23 FSSLPVMSLREKIVEKVLE----NRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGG 98 (1020)
Q Consensus 23 r~~LPi~~~Q~eil~~i~~----~~~vII~apTGSGKTt~ip~~lle~~~~~IivtqPrrlaa~sva~rva~e~~~~lg~ 98 (1020)
.....+++||+++++++.+ ++..+|++|||+|||......+.+... .++|+.||+.++.|.+++.....+.. .
T Consensus 32 ~~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~-~~Lvlv~~~~L~~Qw~~~~~~~~~~~--~ 108 (442)
T COG1061 32 AFEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKR-STLVLVPTKELLDQWAEALKKFLLLN--D 108 (442)
T ss_pred ccCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcC-CEEEEECcHHHHHHHHHHHHHhcCCc--c
Confidence 4456799999999999998 899999999999999877666655443 48899999999999988877765543 2
Q ss_pred ccceeccccccccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhccCCeE-EEEeec
Q 001729 99 EVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLR-VVLMSA 177 (1020)
Q Consensus 99 ~Vgy~i~~~~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lk-iIlmSA 177 (1020)
.+|..-+......+ ..|+|+|.+.+.+.-....+...++++||+||||+... ...+.+........ +++|||
T Consensus 109 ~~g~~~~~~~~~~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a------~~~~~~~~~~~~~~~~LGLTA 181 (442)
T COG1061 109 EIGIYGGGEKELEP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPA------PSYRRILELLSAAYPRLGLTA 181 (442)
T ss_pred ccceecCceeccCC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCc------HHHHHHHHhhhcccceeeecc
Confidence 23322122222222 67999999999886211112223799999999994222 12233333334444 999999
Q ss_pred cc---chhhhhHHHhhcCC-------------c--ceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccc
Q 001729 178 TA---DITKYRDYFRDLGR-------------G--ERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLR 239 (1020)
Q Consensus 178 Tl---d~~~~~~~f~~~~~-------------~--~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~ 239 (1020)
|+ |......++..+|. + .+.....+... ........|.+....... .....
T Consensus 182 Tp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~---~t~~~~~~~~~~~~~~~~--------~~~~~ 250 (442)
T COG1061 182 TPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVT---LTEDEEREYAKESARFRE--------LLRAR 250 (442)
T ss_pred CceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEec---cchHHHHHhhhhhhhhhh--------hhhhh
Confidence 96 32344444444320 0 01111111110 000000011000000000 00000
Q ss_pred cC-CCCCCcccccccChhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHH
Q 001729 240 YC-SGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQAL 318 (1020)
Q Consensus 240 ~~-~~~~~~~~~~~~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~ 318 (1020)
.. ...................+..++.... .+.+++||+....+++.++..+... +. +..+.+..+..+|.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~lif~~~~~~a~~i~~~~~~~--~~-~~~it~~t~~~eR~ 322 (442)
T COG1061 251 GTLRAENEARRIAIASERKIAAVRGLLLKHA-----RGDKTLIFASDVEHAYEIAKLFLAP--GI-VEAITGETPKEERE 322 (442)
T ss_pred hhhhHHHHHHHHhhccHHHHHHHHHHHHHhc-----CCCcEEEEeccHHHHHHHHHHhcCC--Cc-eEEEECCCCHHHHH
Confidence 00 0000000000001111111112221111 1358999999999999999998743 33 77889999999999
Q ss_pred HHHHhhhccc-eEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcccC
Q 001729 319 MAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD 391 (1020)
Q Consensus 319 ~i~~~f~~gr-kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~ 391 (1020)
.+++.|+.+. ++||++.++.+|+|+|++.++|- -.+.. |+..+.||+||.-|..+
T Consensus 323 ~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~--------~~~t~----------S~~~~~Q~lGR~LR~~~ 378 (442)
T COG1061 323 AILERFRTGGIKVLVTVKVLDEGVDIPDADVLII--------LRPTG----------SRRLFIQRLGRGLRPAE 378 (442)
T ss_pred HHHHHHHcCCCCEEEEeeeccceecCCCCcEEEE--------eCCCC----------cHHHHHHHhhhhccCCC
Confidence 9999999987 99999999999999999999995 22222 67889999999999633
No 86
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.86 E-value=1.4e-21 Score=241.11 Aligned_cols=312 Identities=19% Similarity=0.214 Sum_probs=208.7
Q ss_pred hhhHHHHHHHHhhccEEEEecCCCCCCc--CChhhhhhhcCCccccccCCceehhhhHHHHHhh--ccccccCccccee-
Q 001729 29 MSLREKIVEKVLENRVTLIVGETGCGKS--SQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAK--GRNCELGGEVGYH- 103 (1020)
Q Consensus 29 ~~~Q~eil~~i~~~~~vII~apTGSGKT--t~ip~~lle~~~~~IivtqPrrlaa~sva~rva~--e~~~~lg~~Vgy~- 103 (1020)
++.|.++|.+++.|+++.|.+|||.||| +|+|.++... ..+|+.|...+..-....+.. .....++..-+..
T Consensus 266 R~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~~g---itvVISPL~SLm~DQv~~L~~~~I~a~~L~s~q~~~~ 342 (941)
T KOG0351|consen 266 RPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLLGG---VTVVISPLISLMQDQVTHLSKKGIPACFLSSIQTAAE 342 (941)
T ss_pred ChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccccCC---ceEEeccHHHHHHHHHHhhhhcCcceeeccccccHHH
Confidence 4579999999999999999999999999 7777777654 556777866655544443311 1111121111110
Q ss_pred --cccccccc--ccceEEeeechhhhHHHH--Hhccccce---eEEEEeecccccc-cccceeehhh--hhHhhccCCeE
Q 001729 104 --IGHSKHLS--ERSKIVFKTAGVLLDEMR--DRGLNALK---YKVIILDEVHERS-VESDLVLVCV--KQLLLKKNDLR 171 (1020)
Q Consensus 104 --i~~~~~~~--~~t~Iiv~Tpg~Ll~~l~--~~~l~l~~---~s~IIIDEaHER~-l~~d~ll~~l--k~ll~~~~~lk 171 (1020)
.-+..... ...+|+|.||+++...-. .....+.. +.++||||||.-+ +..||...+. ..+..+.+...
T Consensus 343 ~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~~vP 422 (941)
T KOG0351|consen 343 RLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFPGVP 422 (941)
T ss_pred HHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhhCCCCC
Confidence 00111112 367999999999865421 11111223 8999999999744 3336655553 33445567789
Q ss_pred EEEeecccchhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCccccc
Q 001729 172 VVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANA 251 (1020)
Q Consensus 172 iIlmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1020)
+|.+|||.....-.+....++...+. + ......+.. ..|...+...
T Consensus 423 ~iALTATAT~~v~~DIi~~L~l~~~~-~-~~~sfnR~N----------------------------L~yeV~~k~~---- 468 (941)
T KOG0351|consen 423 FIALTATATERVREDVIRSLGLRNPE-L-FKSSFNRPN----------------------------LKYEVSPKTD---- 468 (941)
T ss_pred eEEeehhccHHHHHHHHHHhCCCCcc-e-ecccCCCCC----------------------------ceEEEEeccC----
Confidence 99999998776666666665433222 1 111111100 0111000000
Q ss_pred ccChhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc-eE
Q 001729 252 EIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KV 330 (1020)
Q Consensus 252 ~~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kV 330 (1020)
.+....+...+....+ .+.+||+|.++.+++.+...|+..+ +....+|+||+..+|..|.+.|-.+. +|
T Consensus 469 ------~~~~~~~~~~~~~~~~--~~s~IIYC~sr~~ce~vs~~L~~~~--~~a~~YHAGl~~~~R~~Vq~~w~~~~~~V 538 (941)
T KOG0351|consen 469 ------KDALLDILEESKLRHP--DQSGIIYCLSRKECEQVSAVLRSLG--KSAAFYHAGLPPKERETVQKAWMSDKIRV 538 (941)
T ss_pred ------ccchHHHHHHhhhcCC--CCCeEEEeCCcchHHHHHHHHHHhc--hhhHhhhcCCCHHHHHHHHHHHhcCCCeE
Confidence 1111122333333333 3689999999999999999998544 78899999999999999999998888 99
Q ss_pred EEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc-cCCeeEEeechhhccc
Q 001729 331 ILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFGT 405 (1020)
Q Consensus 331 LVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c~rLys~~~~~~ 405 (1020)
||||=..++|||.|||+.||+ |..|..++.| +|-+|||||. .+-.|..+|+-.++..
T Consensus 539 ivATVAFGMGIdK~DVR~ViH--------~~lPks~E~Y----------YQE~GRAGRDG~~s~C~l~y~~~D~~~ 596 (941)
T KOG0351|consen 539 IVATVAFGMGIDKPDVRFVIH--------YSLPKSFEGY----------YQEAGRAGRDGLPSSCVLLYGYADISE 596 (941)
T ss_pred EEEEeeccCCCCCCceeEEEE--------CCCchhHHHH----------HHhccccCcCCCcceeEEecchhHHHH
Confidence 999999999999999999999 8888866666 9999999999 6899999999876654
No 87
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.86 E-value=2.5e-21 Score=226.00 Aligned_cols=301 Identities=21% Similarity=0.258 Sum_probs=203.6
Q ss_pred cchhhhHHHHHHHHhhc------cEEEEecCCCCCCcCChhhhhhhcCC--ccccccCCceehhhhHHHHHhhccccccC
Q 001729 26 LPVMSLREKIVEKVLEN------RVTLIVGETGCGKSSQVPQFLLAENM--EPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (1020)
Q Consensus 26 LPi~~~Q~eil~~i~~~------~~vII~apTGSGKTt~ip~~lle~~~--~~IivtqPrrlaa~sva~rva~e~~~~lg 97 (1020)
+.++..|++++..|..+ -+=+++|+.|||||......++.... .+..+..||.++|.|.+..+++.+. ++|
T Consensus 261 F~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~-~~~ 339 (677)
T COG1200 261 FKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLE-PLG 339 (677)
T ss_pred CCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhh-hcC
Confidence 44889999999999754 24589999999999766555554322 2677788999999999998887654 344
Q ss_pred cccceecccc----------ccccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhcc
Q 001729 98 GEVGYHIGHS----------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKK 167 (1020)
Q Consensus 98 ~~Vgy~i~~~----------~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~ 167 (1020)
..|++-++.. ...+...+|+|+|...+ .+...+.++.+|||||=| | |...--..+..+.
T Consensus 340 i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALi-----Qd~V~F~~LgLVIiDEQH-R-----FGV~QR~~L~~KG 408 (677)
T COG1200 340 IRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALI-----QDKVEFHNLGLVIIDEQH-R-----FGVHQRLALREKG 408 (677)
T ss_pred CeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhh-----hcceeecceeEEEEeccc-c-----ccHHHHHHHHHhC
Confidence 5555554322 22356789999997554 334456699999999999 2 2222222333444
Q ss_pred C-CeEEEEeeccc-chhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCC
Q 001729 168 N-DLRVVLMSATA-DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPS 245 (1020)
Q Consensus 168 ~-~lkiIlmSATl-d~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~ 245 (1020)
. ...+++||||+ +...--..|+++ ++..+..-+.++. |+...
T Consensus 409 ~~~Ph~LvMTATPIPRTLAlt~fgDl------dvS~IdElP~GRk-pI~T~----------------------------- 452 (677)
T COG1200 409 EQNPHVLVMTATPIPRTLALTAFGDL------DVSIIDELPPGRK-PITTV----------------------------- 452 (677)
T ss_pred CCCCcEEEEeCCCchHHHHHHHhccc------cchhhccCCCCCC-ceEEE-----------------------------
Confidence 5 57999999996 444444556553 1211111111110 01000
Q ss_pred CcccccccChhHHHHHHHhhhhhccCCccccccEEEEecchhh--------HHHhhhhccccccceEEEEeecccchHHH
Q 001729 246 PSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYA--------LEQQWHLMKPLSSFFKVHILHSSVDTEQA 317 (1020)
Q Consensus 246 ~~~~~~~~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~--------ie~l~~~L~~~~~~~~v~~lHs~l~~~er 317 (1020)
.........+++.+.+.+ .+ +.++.|.||-.++ ++.+++.|....+++.+..+||.|+.+++
T Consensus 453 --~i~~~~~~~v~e~i~~ei---~~-----GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eK 522 (677)
T COG1200 453 --VIPHERRPEVYERIREEI---AK-----GRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEK 522 (677)
T ss_pred --EeccccHHHHHHHHHHHH---Hc-----CCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHH
Confidence 000111122333332222 21 3588888997665 44566667666677889999999999999
Q ss_pred HHHHHhhhccc-eEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc-cCCeeE
Q 001729 318 LMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVY 395 (1020)
Q Consensus 318 ~~i~~~f~~gr-kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c~ 395 (1020)
.++++.|++|+ +|||||.+.|.|||+|+.++.|- +|+.+ + .-|+..|-+||.||. .+..|+
T Consensus 523 d~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVI--------e~AER----F-----GLaQLHQLRGRVGRG~~qSyC~ 585 (677)
T COG1200 523 DAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVI--------ENAER----F-----GLAQLHQLRGRVGRGDLQSYCV 585 (677)
T ss_pred HHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEE--------echhh----h-----hHHHHHHhccccCCCCcceEEE
Confidence 99999999999 99999999999999999998775 55433 3 446779999999999 789999
Q ss_pred Eeechh
Q 001729 396 RLVTKS 401 (1020)
Q Consensus 396 rLys~~ 401 (1020)
.+|...
T Consensus 586 Ll~~~~ 591 (677)
T COG1200 586 LLYKPP 591 (677)
T ss_pred EEeCCC
Confidence 999853
No 88
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.85 E-value=5.2e-21 Score=230.80 Aligned_cols=105 Identities=18% Similarity=0.159 Sum_probs=88.7
Q ss_pred cccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccceEEEEecccccccccc---------ce
Q 001729 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATNIAESSVTIP---------KV 346 (1020)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~grkVLVATniae~GIdIp---------~V 346 (1020)
+.++||||++.+.++.+...|.. .++....+||.+...++..+...++.| +|+||||+|++|+||| ++
T Consensus 424 ~~pvLIft~s~~~se~ls~~L~~--~gi~~~~L~a~~~~~E~~ii~~ag~~g-~VlIATdmAgRGtDI~l~~~v~~~GGL 500 (762)
T TIGR03714 424 GQPVLLITGSVEMSEIYSELLLR--EGIPHNLLNAQNAAKEAQIIAEAGQKG-AVTVATSMAGRGTDIKLGKGVAELGGL 500 (762)
T ss_pred CCCEEEEECcHHHHHHHHHHHHH--CCCCEEEecCCChHHHHHHHHHcCCCC-eEEEEccccccccCCCCCccccccCCe
Confidence 36899999999999999999984 457888999999988887766655444 8999999999999999 99
Q ss_pred eEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc-cCCeeEEeechhh
Q 001729 347 AYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSF 402 (1020)
Q Consensus 347 ~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c~rLys~~~ 402 (1020)
.+|+. |+++.. + ...||+|||||. .+|.++.+++.++
T Consensus 501 ~vIit--------~~~ps~----------r-id~qr~GRtGRqG~~G~s~~~is~eD 538 (762)
T TIGR03714 501 AVIGT--------ERMENS----------R-VDLQLRGRSGRQGDPGSSQFFVSLED 538 (762)
T ss_pred EEEEe--------cCCCCc----------H-HHHHhhhcccCCCCceeEEEEEccch
Confidence 99998 888762 2 238999999999 6899999988643
No 89
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.85 E-value=3e-20 Score=198.59 Aligned_cols=302 Identities=19% Similarity=0.271 Sum_probs=192.0
Q ss_pred hhhhHHHHHH----HHhhccEEEEecCCCCCCcCChhhhh---hhcCCccccccCCceehhhhHHHHHhhccc-cccCcc
Q 001729 28 VMSLREKIVE----KVLENRVTLIVGETGCGKSSQVPQFL---LAENMEPILCTQPRRFAVVAVAKMVAKGRN-CELGGE 99 (1020)
Q Consensus 28 i~~~Q~eil~----~i~~~~~vII~apTGSGKTt~ip~~l---le~~~~~IivtqPrrlaa~sva~rva~e~~-~~lg~~ 99 (1020)
+++.|+.+-. .+.+.+.+||.|-||+|||..+-+-+ ++.| .+|.+..||--.+..++.|+.+.+. +.+.-.
T Consensus 98 Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G-~~vciASPRvDVclEl~~Rlk~aF~~~~I~~L 176 (441)
T COG4098 98 LSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQG-GRVCIASPRVDVCLELYPRLKQAFSNCDIDLL 176 (441)
T ss_pred cChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcC-CeEEEecCcccchHHHHHHHHHhhccCCeeeE
Confidence 4566766544 45577899999999999996554443 4333 4788999999999999999988654 333221
Q ss_pred cceeccccccccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehh-hhhHhhccCCeEEEEeecc
Q 001729 100 VGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVC-VKQLLLKKNDLRVVLMSAT 178 (1020)
Q Consensus 100 Vgy~i~~~~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~-lk~ll~~~~~lkiIlmSAT 178 (1020)
- +..+. .-.+.++|+|.-.|++.-. .++++||||+|--....|-.+.+ ++. .+...--+|.||||
T Consensus 177 y----g~S~~-~fr~plvVaTtHQLlrFk~-------aFD~liIDEVDAFP~~~d~~L~~Av~~--ark~~g~~IylTAT 242 (441)
T COG4098 177 Y----GDSDS-YFRAPLVVATTHQLLRFKQ-------AFDLLIIDEVDAFPFSDDQSLQYAVKK--ARKKEGATIYLTAT 242 (441)
T ss_pred e----cCCch-hccccEEEEehHHHHHHHh-------hccEEEEeccccccccCCHHHHHHHHH--hhcccCceEEEecC
Confidence 1 12222 2238899999999988543 67999999999544444443332 222 22345578999999
Q ss_pred cchhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCcccccccChhHH
Q 001729 179 ADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVH 258 (1020)
Q Consensus 179 ld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (1020)
...+.-.+.... ....+.+|.+-.+...|+..+ .+....+.......+..
T Consensus 243 p~k~l~r~~~~g-----~~~~~klp~RfH~~pLpvPkf----------------------~w~~~~~k~l~r~kl~~--- 292 (441)
T COG4098 243 PTKKLERKILKG-----NLRILKLPARFHGKPLPVPKF----------------------VWIGNWNKKLQRNKLPL--- 292 (441)
T ss_pred ChHHHHHHhhhC-----CeeEeecchhhcCCCCCCCce----------------------EEeccHHHHhhhccCCH---
Confidence 765444443322 223334443322222221110 00000000000011111
Q ss_pred HHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc-eEEEEeccc
Q 001729 259 KLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIA 337 (1020)
Q Consensus 259 ~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVLVATnia 337 (1020)
++..++...... +.++|||+|+.+..++++..|+.......+...|+. ...|.+..+.|++|. ++||+|.|+
T Consensus 293 ----kl~~~lekq~~~-~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTIL 365 (441)
T COG4098 293 ----KLKRWLEKQRKT-GRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTIL 365 (441)
T ss_pred ----HHHHHHHHHHhc-CCcEEEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehh
Confidence 223333322222 469999999999999999999665555677888875 345777788999999 999999999
Q ss_pred cccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc---cCCeeEEe
Q 001729 338 ESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT---CDGQVYRL 397 (1020)
Q Consensus 338 e~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~---~~G~c~rL 397 (1020)
|+|+|+|+|+++|- +.... .+ |+++.+|.+||+||. ..|.++-+
T Consensus 366 ERGVTfp~vdV~Vl---------gaeh~--vf-----TesaLVQIaGRvGRs~~~PtGdv~FF 412 (441)
T COG4098 366 ERGVTFPNVDVFVL---------GAEHR--VF-----TESALVQIAGRVGRSLERPTGDVLFF 412 (441)
T ss_pred hcccccccceEEEe---------cCCcc--cc-----cHHHHHHHhhhccCCCcCCCCcEEEE
Confidence 99999999999883 33321 23 788999999999998 34665544
No 90
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.85 E-value=1.9e-21 Score=231.14 Aligned_cols=297 Identities=19% Similarity=0.156 Sum_probs=177.7
Q ss_pred EEecCCCCCCcCChhhhhh---hcCCccccccCCceehhhhHHHHHhhccccccCcccceecc------ccccccccceE
Q 001729 46 LIVGETGCGKSSQVPQFLL---AENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIG------HSKHLSERSKI 116 (1020)
Q Consensus 46 II~apTGSGKTt~ip~~ll---e~~~~~IivtqPrrlaa~sva~rva~e~~~~lg~~Vgy~i~------~~~~~~~~t~I 116 (1020)
++.|+||||||..+...+. +.+ ++++++.|++.++.|+++++.+.++..+....|.... ..+....+.+|
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g-~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~I 79 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALG-KSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILV 79 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcC-CeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCE
Confidence 4789999999976655543 333 4688888999999999999987665433221111100 01112346789
Q ss_pred EeeechhhhHHHHHhccccceeEEEEeecccccccccceeehh----hhhHhhccCCeEEEEeecccchhhhhHHHhhcC
Q 001729 117 VFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVC----VKQLLLKKNDLRVVLMSATADITKYRDYFRDLG 192 (1020)
Q Consensus 117 iv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~----lk~ll~~~~~lkiIlmSATld~~~~~~~f~~~~ 192 (1020)
+|+|+..+.. .+.++++|||||+|+-+...+-...+ +..+.....+.++|++|||+..+.+......
T Consensus 80 VVGTrsalf~-------p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsles~~~~~~g-- 150 (505)
T TIGR00595 80 VIGTRSALFL-------PFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLESYHNAKQK-- 150 (505)
T ss_pred EECChHHHcC-------cccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHhcC--
Confidence 9999986632 34588999999999654433222211 2223344568899999999887766555321
Q ss_pred CcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCcccccccChhHHHHHHHhhhhhccCC
Q 001729 193 RGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNE 272 (1020)
Q Consensus 193 ~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ll~~i~~~~ 272 (1020)
.......+....+...|. + .....+. ......+.....+.+.+.+ .
T Consensus 151 ---~~~~~~l~~r~~~~~~p~-v------------------~vid~~~------~~~~~~ls~~l~~~i~~~l---~--- 196 (505)
T TIGR00595 151 ---AYRLLVLTRRVSGRKPPE-V------------------KLIDMRK------EPRQSFLSPELITAIEQTL---A--- 196 (505)
T ss_pred ---CeEEeechhhhcCCCCCe-E------------------EEEeccc------ccccCCccHHHHHHHHHHH---H---
Confidence 122222221111100000 0 0000000 0000112222223332222 1
Q ss_pred ccccccEEEEecchhh------------------------------------------------------------HHHh
Q 001729 273 SDIEKSILVFLPTYYA------------------------------------------------------------LEQQ 292 (1020)
Q Consensus 273 ~~~~g~iLVFl~~~~~------------------------------------------------------------ie~l 292 (1020)
.++++|||+|++.- ++.+
T Consensus 197 --~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~ 274 (505)
T TIGR00595 197 --AGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQV 274 (505)
T ss_pred --cCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHH
Confidence 13578999886542 3445
Q ss_pred hhhccccccceEEEEeecccchHHH--HHHHHhhhccc-eEEEEeccccccccccceeEEe--ecccceeeeeecccccc
Q 001729 293 WHLMKPLSSFFKVHILHSSVDTEQA--LMAMKICKSHR-KVILATNIAESSVTIPKVAYVI--DSCRSLQVFWDVNRKID 367 (1020)
Q Consensus 293 ~~~L~~~~~~~~v~~lHs~l~~~er--~~i~~~f~~gr-kVLVATniae~GIdIp~V~~VI--d~G~~k~~~yd~~~~~~ 367 (1020)
.+.|....++..+..+|++++..++ ..+++.|++|+ +|||+|++++.|+|+|+|+.|+ | +|..-...
T Consensus 275 ~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~--------aD~~l~~p 346 (505)
T TIGR00595 275 EEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLD--------ADSGLHSP 346 (505)
T ss_pred HHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEc--------CcccccCc
Confidence 5555544456789999999876654 78899999998 9999999999999999999885 5 45433333
Q ss_pred ceeeEEeehhHHHHhcCCCCcc-cCCeeEE
Q 001729 368 SAELVWVSQSQAEQRRGRTGRT-CDGQVYR 396 (1020)
Q Consensus 368 ~l~~~~iSkas~~QR~GRAGR~-~~G~c~r 396 (1020)
.+....-.-+.+.|++|||||. .+|.++.
T Consensus 347 d~ra~E~~~~ll~q~~GRagR~~~~g~vii 376 (505)
T TIGR00595 347 DFRAAERGFQLLTQVAGRAGRAEDPGQVII 376 (505)
T ss_pred ccchHHHHHHHHHHHHhccCCCCCCCEEEE
Confidence 3322112335679999999997 6788873
No 91
>PRK09694 helicase Cas3; Provisional
Probab=99.84 E-value=2e-20 Score=231.79 Aligned_cols=317 Identities=16% Similarity=0.137 Sum_probs=177.6
Q ss_pred cchhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhh---hc-CCccccccCCceehhhhHHHHHhhcc----c-ccc
Q 001729 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLL---AE-NMEPILCTQPRRFAVVAVAKMVAKGR----N-CEL 96 (1020)
Q Consensus 26 LPi~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~ll---e~-~~~~IivtqPrrlaa~sva~rva~e~----~-~~l 96 (1020)
...+++|..+.+.......+||.+|||+|||.+...++. .. +...|+++.|++..+.++.+|+.+.. + ..+
T Consensus 285 ~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~v 364 (878)
T PRK09694 285 YQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFPSPNL 364 (878)
T ss_pred CCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCce
Confidence 457899998866545578899999999999966544432 22 34589999999999999999987521 1 111
Q ss_pred Ccccceec---cccc--------------------------cccccceEEeeechhhhHHHH-Hhcccc----ceeEEEE
Q 001729 97 GGEVGYHI---GHSK--------------------------HLSERSKIVFKTAGVLLDEMR-DRGLNA----LKYKVII 142 (1020)
Q Consensus 97 g~~Vgy~i---~~~~--------------------------~~~~~t~Iiv~Tpg~Ll~~l~-~~~l~l----~~~s~II 142 (1020)
+-..|... .+.. +..--..|+|+|...++.... .+...+ +.-++||
T Consensus 365 ~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~svvI 444 (878)
T PRK09694 365 ILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVLI 444 (878)
T ss_pred EeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCeEE
Confidence 11111110 0000 000126899999877764322 111111 1457999
Q ss_pred eecccccccccc-eeehhhhhHhhccCCeEEEEeecccchhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHH
Q 001729 143 LDEVHERSVESD-LVLVCVKQLLLKKNDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQV 221 (1020)
Q Consensus 143 IDEaHER~l~~d-~ll~~lk~ll~~~~~lkiIlmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~ 221 (1020)
|||+|--...+. ++..+++.+. ....++|+||||++.....++....+...++. . ...||.... ...
T Consensus 445 iDEVHAyD~ym~~lL~~~L~~l~--~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~-----~---~~~YPlvt~-~~~- 512 (878)
T PRK09694 445 VDEVHAYDAYMYGLLEAVLKAQA--QAGGSVILLSATLPATLKQKLLDTYGGHDPVE-----L---SSAYPLITW-RGV- 512 (878)
T ss_pred EechhhCCHHHHHHHHHHHHHHH--hcCCcEEEEeCCCCHHHHHHHHHHhccccccc-----c---ccccccccc-ccc-
Confidence 999994332221 2222333322 23567999999998766555554332111100 0 001111000 000
Q ss_pred HHHhcCCccccccccccccCCC--CCCccc---cc--ccChhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhh
Q 001729 222 TELLGVDHGMTSELSSLRYCSG--PSPSMA---NA--EIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWH 294 (1020)
Q Consensus 222 ~~~l~~~~~~~~~~~~~~~~~~--~~~~~~---~~--~~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~ 294 (1020)
.. .. ......... +.+... .. ........++..++..+. .++++|||+||++.++.+++
T Consensus 513 ---~~----~~--~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~-----~g~~vLVf~NTV~~Aq~ly~ 578 (878)
T PRK09694 513 ---NG----AQ--RFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAAN-----AGAQVCLICNLVDDAQKLYQ 578 (878)
T ss_pred ---cc----ce--eeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHh-----cCCEEEEEECCHHHHHHHHH
Confidence 00 00 000000000 000000 00 000001122222222221 14689999999999999999
Q ss_pred hccccc-cceEEEEeecccchHHHH----HHHHhh-hccc----eEEEEeccccccccccceeEEeecccceeeeeeccc
Q 001729 295 LMKPLS-SFFKVHILHSSVDTEQAL----MAMKIC-KSHR----KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNR 364 (1020)
Q Consensus 295 ~L~~~~-~~~~v~~lHs~l~~~er~----~i~~~f-~~gr----kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~ 364 (1020)
.|+... ....+..+||.++..+|. ++++.| ++++ +|||||+++|+|||| +++++|. ...|
T Consensus 579 ~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlIt--------dlaP- 648 (878)
T PRK09694 579 RLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLIT--------QLCP- 648 (878)
T ss_pred HHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEE--------CCCC-
Confidence 998543 236799999999998884 455667 4443 799999999999999 5788874 2222
Q ss_pred cccceeeEEeehhHHHHhcCCCCcc
Q 001729 365 KIDSAELVWVSQSQAEQRRGRTGRT 389 (1020)
Q Consensus 365 ~~~~l~~~~iSkas~~QR~GRAGR~ 389 (1020)
..+++||+||+||.
T Consensus 649 -----------idsLiQRaGR~~R~ 662 (878)
T PRK09694 649 -----------VDLLFQRLGRLHRH 662 (878)
T ss_pred -----------HHHHHHHHhccCCC
Confidence 24569999999998
No 92
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.83 E-value=1.7e-20 Score=228.37 Aligned_cols=106 Identities=21% Similarity=0.190 Sum_probs=90.8
Q ss_pred cccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccceEEEEeccccccccc---ccee-----
Q 001729 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATNIAESSVTI---PKVA----- 347 (1020)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~grkVLVATniae~GIdI---p~V~----- 347 (1020)
+.++||||++.+.++.++..|.. .++.+..+||.+...++..+...++.| +|+||||+|++|+|| |+|.
T Consensus 428 ~~pvLIf~~t~~~se~l~~~L~~--~gi~~~~L~~~~~~~e~~~i~~ag~~g-~VlIATdmAgRG~DI~l~~~V~~~GGL 504 (790)
T PRK09200 428 GRPVLIGTGSIEQSETFSKLLDE--AGIPHNLLNAKNAAKEAQIIAEAGQKG-AVTVATNMAGRGTDIKLGEGVHELGGL 504 (790)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHH--CCCCEEEecCCccHHHHHHHHHcCCCC-eEEEEccchhcCcCCCcccccccccCc
Confidence 46899999999999999999984 468899999999888877766665544 899999999999999 7999
Q ss_pred EEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc-cCCeeEEeechhh
Q 001729 348 YVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSF 402 (1020)
Q Consensus 348 ~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c~rLys~~~ 402 (1020)
+||+ ||.|. |...+.||+||+||. .+|.++.+++.++
T Consensus 505 ~VI~--------~d~p~----------s~r~y~qr~GRtGR~G~~G~s~~~is~eD 542 (790)
T PRK09200 505 AVIG--------TERME----------SRRVDLQLRGRSGRQGDPGSSQFFISLED 542 (790)
T ss_pred EEEe--------ccCCC----------CHHHHHHhhccccCCCCCeeEEEEEcchH
Confidence 9999 88887 445559999999999 6899999988643
No 93
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.83 E-value=9.8e-21 Score=226.07 Aligned_cols=104 Identities=24% Similarity=0.254 Sum_probs=86.4
Q ss_pred ccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc-eEEEEecccccccccc---cee-----
Q 001729 277 KSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIP---KVA----- 347 (1020)
Q Consensus 277 g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVLVATniae~GIdIp---~V~----- 347 (1020)
.++|||+++.+.++.++..|.. .++.+..+||.+...++. +..++++. +|+||||+|++|+||+ +|.
T Consensus 474 ~pvLIft~t~~~se~L~~~L~~--~gi~~~~Lhg~~~~rE~~--ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGL 549 (656)
T PRK12898 474 RPVLVGTRSVAASERLSALLRE--AGLPHQVLNAKQDAEEAA--IVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGL 549 (656)
T ss_pred CCEEEEeCcHHHHHHHHHHHHH--CCCCEEEeeCCcHHHHHH--HHHHcCCCCcEEEEccchhcccCcCCccchhhcCCC
Confidence 5799999999999999999984 468899999986654444 44455555 8999999999999999 776
Q ss_pred EEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc-cCCeeEEeechhh
Q 001729 348 YVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSF 402 (1020)
Q Consensus 348 ~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c~rLys~~~ 402 (1020)
+||+ ||.|.. ...|.||+||+||. .+|.++.+++.++
T Consensus 550 hVI~--------~d~P~s----------~r~y~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 550 HVIL--------TERHDS----------ARIDRQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred EEEE--------cCCCCC----------HHHHHHhcccccCCCCCeEEEEEechhH
Confidence 9998 888874 44559999999999 6899999998643
No 94
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.83 E-value=3.6e-20 Score=237.21 Aligned_cols=274 Identities=16% Similarity=0.172 Sum_probs=169.8
Q ss_pred cchhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhh--hcCCccccccCCceehhhhHHHHHhhccccccCc---cc
Q 001729 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLL--AENMEPILCTQPRRFAVVAVAKMVAKGRNCELGG---EV 100 (1020)
Q Consensus 26 LPi~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~ll--e~~~~~IivtqPrrlaa~sva~rva~e~~~~lg~---~V 100 (1020)
..++++|...++.+..+++++++||||||||+.+..++. .....+++++.|+|.+|.|+++.+..... ..|. .+
T Consensus 77 ~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~l~~-~~~i~~~~i 155 (1171)
T TIGR01054 77 SEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTTFGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKISSLAE-KAGVGTVNI 155 (1171)
T ss_pred CCCcHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHHHHH-hcCCceeee
Confidence 467899999999999999999999999999963221111 12234789999999999999888766332 1111 11
Q ss_pred ceeccc---c------cc-ccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccc-----------cceeehh
Q 001729 101 GYHIGH---S------KH-LSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVE-----------SDLVLVC 159 (1020)
Q Consensus 101 gy~i~~---~------~~-~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~-----------~d~ll~~ 159 (1020)
++..+. . .. ...+.+|+|+||+.|.+.+..- .. ++++||||||| +.++ .+|....
T Consensus 156 ~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l--~~-~~~~iVvDEaD-~~L~~~k~vd~il~llGF~~e~ 231 (1171)
T TIGR01054 156 GAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL--GP-KFDFIFVDDVD-ALLKASKNVDKLLKLLGFSEEL 231 (1171)
T ss_pred eeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh--cC-CCCEEEEeChH-hhhhccccHHHHHHHcCCCHHH
Confidence 111111 0 01 1235899999999998766531 12 79999999999 4544 2333221
Q ss_pred hhhHh-----------------------hccCCe--EEEEeecccchhhhh-HHHhhcCCcceEEEEEecCCCchhhHHH
Q 001729 160 VKQLL-----------------------LKKNDL--RVVLMSATADITKYR-DYFRDLGRGERVEVLAIPSTNQRTIFQR 213 (1020)
Q Consensus 160 lk~ll-----------------------~~~~~l--kiIlmSATld~~~~~-~~f~~~~~~~~v~v~~~p~~~~~~~~~v 213 (1020)
+..++ ...... .++++|||+.+.... .+|..+. .+++ ... ..
T Consensus 232 i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~ll---~~~v---~~~-~~----- 299 (1171)
T TIGR01054 232 IEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFRELL---GFEV---GGG-SD----- 299 (1171)
T ss_pred HHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHccccc---ceEe---cCc-cc-----
Confidence 21111 111222 367789995333222 3333210 0111 000 00
Q ss_pred hhhHHHHHHHHhcCCccccccccccccCCCCCCcccccccChhHHHHHHHhhhhhccCCccccccEEEEecch---hhHH
Q 001729 214 RVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTY---YALE 290 (1020)
Q Consensus 214 ~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~---~~ie 290 (1020)
.+.. ....|. .... . .+.+.+++..+ ++.+|||+++. +.++
T Consensus 300 ---~~r~---------------I~~~~~--------~~~~--~-~~~L~~ll~~l-------~~~~IVFv~t~~~~~~a~ 343 (1171)
T TIGR01054 300 ---TLRN---------------VVDVYV--------EDED--L-KETLLEIVKKL-------GTGGIVYVSIDYGKEKAE 343 (1171)
T ss_pred ---cccc---------------eEEEEE--------eccc--H-HHHHHHHHHHc-------CCCEEEEEeccccHHHHH
Confidence 0000 000000 0000 0 11222333221 24689999998 9999
Q ss_pred HhhhhccccccceEEEEeecccchHHHHHHHHhhhccc-eEEEE----eccccccccccc-eeEEeecccceee
Q 001729 291 QQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILA----TNIAESSVTIPK-VAYVIDSCRSLQV 358 (1020)
Q Consensus 291 ~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVLVA----Tniae~GIdIp~-V~~VId~G~~k~~ 358 (1020)
.+++.|.. .++.+..+||+++. .+++.|++|+ +|||| ||++++|||||+ |+|||+.|..+.+
T Consensus 344 ~l~~~L~~--~g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~~ 411 (1171)
T TIGR01054 344 EIAEFLEN--HGVKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKFK 411 (1171)
T ss_pred HHHHHHHh--CCceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCCEE
Confidence 99999984 46899999999973 5789999999 99999 499999999999 8999997776654
No 95
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.82 E-value=3.1e-20 Score=222.71 Aligned_cols=105 Identities=22% Similarity=0.215 Sum_probs=90.7
Q ss_pred cccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc-eEEEEeccccccccccc-------ee
Q 001729 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPK-------VA 347 (1020)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVLVATniae~GIdIp~-------V~ 347 (1020)
+.++||||++.+.++.+++.|.. .++....+|+. ..+|...+..|+++. .|+||||+|++|+||+. .-
T Consensus 405 grpvLV~t~si~~se~ls~~L~~--~gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl 480 (745)
T TIGR00963 405 GQPVLVGTTSVEKSELLSNLLKE--RGIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGL 480 (745)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHH--cCCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCc
Confidence 46999999999999999999984 45778889998 778888888999888 99999999999999998 44
Q ss_pred EEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc-cCCeeEEeechhh
Q 001729 348 YVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSF 402 (1020)
Q Consensus 348 ~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c~rLys~~~ 402 (1020)
+||. |+.+. |+..+.||+||+||. .||.+..+++.++
T Consensus 481 ~VI~--------t~~p~----------s~ri~~q~~GRtGRqG~~G~s~~~ls~eD 518 (745)
T TIGR00963 481 YVIG--------TERHE----------SRRIDNQLRGRSGRQGDPGSSRFFLSLED 518 (745)
T ss_pred EEEe--------cCCCC----------cHHHHHHHhccccCCCCCcceEEEEeccH
Confidence 9998 77776 556669999999999 6899998888653
No 96
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.82 E-value=7.6e-20 Score=224.17 Aligned_cols=297 Identities=16% Similarity=0.181 Sum_probs=211.7
Q ss_pred hhhHHHHHHHHhhc------cEEEEecCCCCCCcCChhhhhhh--cCCccccccCCceehhhhHHHHHhhccccccCccc
Q 001729 29 MSLREKIVEKVLEN------RVTLIVGETGCGKSSQVPQFLLA--ENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEV 100 (1020)
Q Consensus 29 ~~~Q~eil~~i~~~------~~vII~apTGSGKTt~ip~~lle--~~~~~IivtqPrrlaa~sva~rva~e~~~~lg~~V 100 (1020)
++=|..+|+.+.+. -+=+|||..|-|||-++...... ...++|.++.||.++|+|..+.+.+.+. .++..|
T Consensus 596 T~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~-~fPV~I 674 (1139)
T COG1197 596 TPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFA-GFPVRI 674 (1139)
T ss_pred CHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhc-CCCeeE
Confidence 45688888888643 25699999999999766655443 3346899999999999999998877553 234445
Q ss_pred ceecccccc----------ccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhccCCe
Q 001729 101 GYHIGHSKH----------LSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDL 170 (1020)
Q Consensus 101 gy~i~~~~~----------~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~l 170 (1020)
+..-|+.+. .....+|+|+|...| ++.+.+.+++++||||-|. |...--.++...+.++
T Consensus 675 ~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL-----~kdv~FkdLGLlIIDEEqR------FGVk~KEkLK~Lr~~V 743 (1139)
T COG1197 675 EVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLL-----SKDVKFKDLGLLIIDEEQR------FGVKHKEKLKELRANV 743 (1139)
T ss_pred EEecccCCHHHHHHHHHHHhcCCccEEEechHhh-----CCCcEEecCCeEEEechhh------cCccHHHHHHHHhccC
Confidence 544454322 245789999997555 3445566999999999993 4444445556668899
Q ss_pred EEEEeecccchhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCcccc
Q 001729 171 RVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMAN 250 (1020)
Q Consensus 171 kiIlmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (1020)
-++-||||+=+..+.--+.++ ....++..|.. ..+||..+..+
T Consensus 744 DvLTLSATPIPRTL~Msm~Gi---RdlSvI~TPP~---~R~pV~T~V~~------------------------------- 786 (1139)
T COG1197 744 DVLTLSATPIPRTLNMSLSGI---RDLSVIATPPE---DRLPVKTFVSE------------------------------- 786 (1139)
T ss_pred cEEEeeCCCCcchHHHHHhcc---hhhhhccCCCC---CCcceEEEEec-------------------------------
Confidence 999999997544444333321 22334444332 22333322100
Q ss_pred cccChhHHHHHHHh-hhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc-
Q 001729 251 AEIKPEVHKLIHDL-VLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR- 328 (1020)
Q Consensus 251 ~~~~~~~~~li~~l-l~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr- 328 (1020)
....++.+. +.++. .+|++-...|..++++++++.|+.+-+..+|.+.||.|+..+-+.++..|-+|+
T Consensus 787 -----~d~~~ireAI~REl~-----RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~ 856 (1139)
T COG1197 787 -----YDDLLIREAILRELL-----RGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEY 856 (1139)
T ss_pred -----CChHHHHHHHHHHHh-----cCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCC
Confidence 001122222 22222 257888889999999999999999999999999999999999999999999999
Q ss_pred eEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc-cCCeeEEeechh
Q 001729 329 KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKS 401 (1020)
Q Consensus 329 kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c~rLys~~ 401 (1020)
+|||||.|.|+|||||+++.+|- .+ .+.+ .-|+..|-+||.||. ..|.||.||.+.
T Consensus 857 dVLv~TTIIEtGIDIPnANTiII--------e~----AD~f-----GLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 857 DVLVCTTIIETGIDIPNANTIII--------ER----ADKF-----GLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred CEEEEeeeeecCcCCCCCceEEE--------ec----cccc-----cHHHHHHhccccCCccceEEEEEeecCc
Confidence 99999999999999999999883 11 1222 346779999999999 789999999864
No 97
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.81 E-value=3.6e-19 Score=226.54 Aligned_cols=341 Identities=17% Similarity=0.209 Sum_probs=191.1
Q ss_pred cchhhhHHHHHHHHhh-----ccEEEEecCCCCCCcCChhhhh---hhc-CCccccccCCceehhhhHHHHHhhcccccc
Q 001729 26 LPVMSLREKIVEKVLE-----NRVTLIVGETGCGKSSQVPQFL---LAE-NMEPILCTQPRRFAVVAVAKMVAKGRNCEL 96 (1020)
Q Consensus 26 LPi~~~Q~eil~~i~~-----~~~vII~apTGSGKTt~ip~~l---le~-~~~~IivtqPrrlaa~sva~rva~e~~~~l 96 (1020)
+.+++||.++++++.+ ++..+|+++||||||..+...+ +.. ..++|+++.+|..+..|..+.+..... ..
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~-~~ 490 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKI-EG 490 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhccc-cc
Confidence 5678999999988752 3679999999999994433322 222 346899999999999998887665311 11
Q ss_pred Ccccc--eecc--ccccccccceEEeeechhhhHHHHHh-----ccccceeEEEEeeccccccccccee-----------
Q 001729 97 GGEVG--YHIG--HSKHLSERSKIVFKTAGVLLDEMRDR-----GLNALKYKVIILDEVHERSVESDLV----------- 156 (1020)
Q Consensus 97 g~~Vg--y~i~--~~~~~~~~t~Iiv~Tpg~Ll~~l~~~-----~l~l~~~s~IIIDEaHER~l~~d~l----------- 156 (1020)
+..++ |.+. .+.....+.+|+|+|.+.|.+.+... ......+++||||||| |+...|-.
T Consensus 491 ~~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaH-Rs~~~d~~~~~~~~~~~~~ 569 (1123)
T PRK11448 491 DQTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAH-RGYTLDKEMSEGELQFRDQ 569 (1123)
T ss_pred ccchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCC-CCCccccccccchhccchh
Confidence 10000 1111 11122346899999999988765321 1234589999999999 76532210
Q ss_pred ---ehhhhhHhhccCCeEEEEeecccchhhhhHHHhhcCCcceEEEEEecCC-CchhhHHH--hhhHHHHHHHHhcCCcc
Q 001729 157 ---LVCVKQLLLKKNDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPST-NQRTIFQR--RVSYLEQVTELLGVDHG 230 (1020)
Q Consensus 157 ---l~~lk~ll~~~~~lkiIlmSATld~~~~~~~f~~~~~~~~v~v~~~p~~-~~~~~~~v--~v~yl~~~~~~l~~~~~ 230 (1020)
....+.++. ..+..+|+||||+... -.++|+. ++........ ..+...+. ...|.. .....++...
T Consensus 570 ~~~~~~yr~iL~-yFdA~~IGLTATP~r~-t~~~FG~-----pv~~Ysl~eAI~DG~Lv~~~~p~~i~t-~~~~~gi~~~ 641 (1123)
T PRK11448 570 LDYVSKYRRVLD-YFDAVKIGLTATPALH-TTEIFGE-----PVYTYSYREAVIDGYLIDHEPPIRIET-RLSQEGIHFE 641 (1123)
T ss_pred hhHHHHHHHHHh-hcCccEEEEecCCccc-hhHHhCC-----eeEEeeHHHHHhcCCcccCcCCEEEEE-Eecccccccc
Confidence 122344443 2356789999998632 3456653 1111110000 00000000 000000 0000000000
Q ss_pred ccccc--cc---cccCCCCCCc---cccc-----ccChhHHHHH-HHhhhhhccCCccccccEEEEecchhhHHHhhhhc
Q 001729 231 MTSEL--SS---LRYCSGPSPS---MANA-----EIKPEVHKLI-HDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLM 296 (1020)
Q Consensus 231 ~~~~~--~~---~~~~~~~~~~---~~~~-----~~~~~~~~li-~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L 296 (1020)
...+. .. ........++ +... .+.+...+.+ .+++.++... +++++||||.+.++++.+.+.|
T Consensus 642 ~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~---~~~KtiIF~~s~~HA~~i~~~L 718 (1123)
T PRK11448 642 KGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPT---GEGKTLIFAATDAHADMVVRLL 718 (1123)
T ss_pred ccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhcc---CCCcEEEEEcCHHHHHHHHHHH
Confidence 00000 00 0000000000 0000 0011111222 2333333222 2479999999999999888877
Q ss_pred cccc-------cceEEEEeecccchHHHHHHHHhhhccc--eEEEEeccccccccccceeEEeecccceeeeeecccccc
Q 001729 297 KPLS-------SFFKVHILHSSVDTEQALMAMKICKSHR--KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKID 367 (1020)
Q Consensus 297 ~~~~-------~~~~v~~lHs~l~~~er~~i~~~f~~gr--kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~ 367 (1020)
.... ....+..+||+.+ ++..+++.|+++. +|+|+++++.+|+|+|.|.+||. +++..
T Consensus 719 ~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf--------~rpvk--- 785 (1123)
T PRK11448 719 KEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVF--------LRRVR--- 785 (1123)
T ss_pred HHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEE--------ecCCC---
Confidence 5321 1124556888875 4566889998876 79999999999999999999996 55555
Q ss_pred ceeeEEeehhHHHHhcCCCCcccC--Ce-eEEeec
Q 001729 368 SAELVWVSQSQAEQRRGRTGRTCD--GQ-VYRLVT 399 (1020)
Q Consensus 368 ~l~~~~iSkas~~QR~GRAGR~~~--G~-c~rLys 399 (1020)
|+..|+||+||+.|..+ |+ .+.++.
T Consensus 786 -------S~~lf~QmIGRgtR~~~~~~K~~f~I~D 813 (1123)
T PRK11448 786 -------SRILYEQMLGRATRLCPEIGKTHFRIFD 813 (1123)
T ss_pred -------CHHHHHHHHhhhccCCccCCCceEEEEe
Confidence 67778999999999977 55 455555
No 98
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.78 E-value=5.2e-20 Score=214.90 Aligned_cols=541 Identities=8% Similarity=-0.135 Sum_probs=363.2
Q ss_pred cccCcchhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcCC-------ccccccCCceehhhhHHHHHhhcccc
Q 001729 22 EFSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM-------EPILCTQPRRFAVVAVAKMVAKGRNC 94 (1020)
Q Consensus 22 ~r~~LPi~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~~-------~~IivtqPrrlaa~sva~rva~e~~~ 94 (1020)
++.-+|.+++-+.|++++..+.++++-+.||||||++.++.+++.-. +.++.++||+..|...+.++.-+.++
T Consensus 401 etgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf~Sa~prpyg~i~fctv 480 (1282)
T KOG0921|consen 401 ETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRFDSATPRPYGSIMFCTV 480 (1282)
T ss_pred cccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccccccccccccccccccceeeecc
Confidence 34558999999999999999999999999999999999999997532 37999999999999999999988888
Q ss_pred ccCcccceecccccc-ccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhccCCeEEE
Q 001729 95 ELGGEVGYHIGHSKH-LSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVV 173 (1020)
Q Consensus 95 ~lg~~Vgy~i~~~~~-~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiI 173 (1020)
.++...+|..++... ...+..+-++|.+.|+..+..+- ....+.+.||.|++++++|++..+++.+ .++.
T Consensus 481 gvllr~~e~glrg~sh~i~deiherdv~~dfll~~lr~m---~~ty~dl~v~lmsatIdTd~f~~~f~~~------p~~~ 551 (1282)
T KOG0921|consen 481 GVLLRMMENGLRGISHVIIDEIHERDVDTDFVLIVLREM---ISTYRDLRVVLMSATIDTDLFTNFFSSI------PDVT 551 (1282)
T ss_pred chhhhhhhhcccccccccchhhhhhccchHHHHHHHHhh---hccchhhhhhhhhcccchhhhhhhhccc------ccee
Confidence 888777777655433 34556677889999988877653 3778899999999999999998887765 3569
Q ss_pred EeecccchhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcC-----CccccccccccccC---CCCC
Q 001729 174 LMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGV-----DHGMTSELSSLRYC---SGPS 245 (1020)
Q Consensus 174 lmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~-----~~~~~~~~~~~~~~---~~~~ 245 (1020)
++++|.+...|-.++-.. .+..+|+.+. +++..+.++..+...- .............+ ....
T Consensus 552 ~~grt~pvq~F~led~~~------~~~~vp~~~~----~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~~s 621 (1282)
T KOG0921|consen 552 VHGRTFPVQSFFLEDIIQ------MTQFVPSEPS----QKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMSRLS 621 (1282)
T ss_pred eccccccHHHHHHHHhhh------hhhccCCCcC----ccchhhcccccCchhhhcccccccccChhhcchhhhhhhcch
Confidence 999999887766655331 2223333211 1111111110000000 00000000000000 0000
Q ss_pred CcccccccChhH--HHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhcccc----ccceEEEEeecccchHHHHH
Q 001729 246 PSMANAEIKPEV--HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL----SSFFKVHILHSSVDTEQALM 319 (1020)
Q Consensus 246 ~~~~~~~~~~~~--~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~----~~~~~v~~lHs~l~~~er~~ 319 (1020)
.......+.+.. ..+...+...|....+ ++..|+|++++.-.......+... .....+...|+.+...+...
T Consensus 622 e~d~~f~l~Eal~~~i~s~~i~gailvflp--gwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~g 699 (1282)
T KOG0921|consen 622 EKDIPFGLIEALLNDIASRNIDGAVLVFLP--GWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEG 699 (1282)
T ss_pred hhcchhHHHHHHHhhhcccCCccceeeecC--chHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCccccc
Confidence 000111111111 1112223333333333 578999999998777766655432 12345667788888777766
Q ss_pred HHHhhhccc-eEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcccCCeeEEee
Q 001729 320 AMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLV 398 (1020)
Q Consensus 320 i~~~f~~gr-kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~c~rLy 398 (1020)
+.+....+. ++...|+..++.|.+..+.+|++++..+.+.+-....++.+.++|-+...-.||.|||+|...+.||.+.
T Consensus 700 v~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~~f~lcs~arF~~l 779 (1282)
T KOG0921|consen 700 VTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGFCFHLCSRARFEAL 779 (1282)
T ss_pred ccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecccccccccHHHHHHHH
Confidence 666665555 9999999999999999999999999988777767777778888999999999999999999999999999
Q ss_pred chhhcccccccCCcceehhhHhHHHHHhhccCccccCChhHHHhhhcCCCCccchhhHHHHHHHHhhhhhcCCCCccCcc
Q 001729 399 TKSFFGTLEDHECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPT 478 (1020)
Q Consensus 399 s~~~~~~l~~~~~PEI~r~~L~~~vL~l~~~~~~~l~~~~~~l~~~ldpP~~~~i~~al~~L~~lgald~~~~~g~~~lT 478 (1020)
+...+.+|..+..+||.++.+....+.++..-.++++.+ ..+.+.+|+......+ .|...+-+.. .|+..+|
T Consensus 780 ~~~~t~em~r~plhemalTikll~l~SI~~fl~kal~~~---p~dav~e~e~~l~~m~--~ld~n~elt~---lg~~la~ 851 (1282)
T KOG0921|consen 780 EDHGTAEMFRTPLHEIALTIKLLRLGSIGEFLGKALQPP---PYDAVIEAEAVLREMG--ALDANDELTP---LGRMLAR 851 (1282)
T ss_pred HhcCcHhhhcCccHHHHhhHHHHHhhhHHHHHhhccCCC---chhhccCchHHHHHhh--hhhccCcccc---hhhhhhh
Confidence 999999999999999999887776666654444566543 3366666655544333 3333333333 2677899
Q ss_pred ccchhccccccccceeEEEEEeccchhhhhhhhhhhhccCCCccccCCCCccchhhhcccceecCCCCceeeeccceeee
Q 001729 479 FYGRLLASFSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPFGDDALFAEYTGCYFGGDGNTRLLTGRKEMVI 558 (1020)
Q Consensus 479 ~lG~~~a~lpldp~~a~~ll~~~~~gc~~e~l~Iaa~ls~~~~~~~~P~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~ 558 (1020)
.+|+.....|+.+..+++....+.+-..+-...+++. +..+.++.. .+++. .-...+|. +..-+++
T Consensus 852 l~iep~~~k~~~lg~~~g~~~~m~~~as~~s~~~~~~-~~~~~~~rl-~g~q~--~~~g~kfs----------dhva~~~ 917 (1282)
T KOG0921|consen 852 LPIEPRIGKMMILGTALGAGSVMCDVASAMSFPTPFV-PREKHHSRL-SGTQR--KFAGNKFS----------DHVAIVS 917 (1282)
T ss_pred ccCcccccceeeechhhccchhhhhhhcccccccccc-ccccccccc-ccchh--hccccccc----------cchhhhh
Confidence 9999999999999999887655433222222233322 223323321 22222 11122332 1224567
Q ss_pred ecchhhHHHHHHHhhhhhhHHHHHHhhhccccccccccchhhhhhhhhhHHHHHhhhhhHHHHHHHHHHh
Q 001729 559 MGNLCAFQFWQHVFKDKQRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNA 628 (1020)
Q Consensus 559 l~~l~af~~W~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~wC~~~fL~~~~l~~~~~i~~qL~~~ 628 (1020)
...+-.++.|..+..+. .....+|-.+-++..+++.-+++..||...
T Consensus 918 v~q~~r~~~q~ga~~e~-----------------------efc~r~~l~~~~~~~t~~a~~ql~d~L~q~ 964 (1282)
T KOG0921|consen 918 VIQGYREAVQMGAAAER-----------------------EFCERYSLSNPVLKMTDGARRQLIDVLRQC 964 (1282)
T ss_pred hhhhhHHHhhhhhhhhh-----------------------hHhHhhhhcchhhhhhhhhHHHHHHHHHhc
Confidence 77777899999875432 245678999999999999999999999843
No 99
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.77 E-value=1.8e-18 Score=205.85 Aligned_cols=331 Identities=18% Similarity=0.228 Sum_probs=195.1
Q ss_pred cchhhhHHHHHHH--HhhccEEEEecCCCCCCcCChhhhhhhcC---CccccccCCceehhhhHHHHHhhccccccCccc
Q 001729 26 LPVMSLREKIVEK--VLENRVTLIVGETGCGKSSQVPQFLLAEN---MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEV 100 (1020)
Q Consensus 26 LPi~~~Q~eil~~--i~~~~~vII~apTGSGKTt~ip~~lle~~---~~~IivtqPrrlaa~sva~rva~e~~~~lg~~V 100 (1020)
+.++..|.+++.. ++++++.|..+||+.|||.+.-..++... .+.++...|-...++.-...+.. +.+.+|-.|
T Consensus 222 ~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~l~~-~~~~~G~~v 300 (1008)
T KOG0950|consen 222 LKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISALSP-FSIDLGFPV 300 (1008)
T ss_pred HHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhhhhh-hccccCCcc
Confidence 4567788888754 67889999999999999976655554432 13444555544444433333332 222333322
Q ss_pred -ceeccccc-cccccceEEeeechhhhHHH----HHhccccceeEEEEeecccccccccc---eeehhhhhHhhc--cCC
Q 001729 101 -GYHIGHSK-HLSERSKIVFKTAGVLLDEM----RDRGLNALKYKVIILDEVHERSVESD---LVLVCVKQLLLK--KND 169 (1020)
Q Consensus 101 -gy~i~~~~-~~~~~t~Iiv~Tpg~Ll~~l----~~~~l~l~~~s~IIIDEaHER~l~~d---~ll~~lk~ll~~--~~~ 169 (1020)
+|.-++.. ...+...+.+||.++-...+ ..+. +..++.|||||.|. ..+.. .+..++.+++.. ...
T Consensus 301 e~y~g~~~p~~~~k~~sv~i~tiEkanslin~lie~g~--~~~~g~vvVdElhm-i~d~~rg~~lE~~l~k~~y~~~~~~ 377 (1008)
T KOG0950|consen 301 EEYAGRFPPEKRRKRESVAIATIEKANSLINSLIEQGR--LDFLGMVVVDELHM-IGDKGRGAILELLLAKILYENLETS 377 (1008)
T ss_pred hhhcccCCCCCcccceeeeeeehHhhHhHHHHHHhcCC--ccccCcEEEeeeee-eeccccchHHHHHHHHHHHhccccc
Confidence 23312221 22456789999998755433 2332 34789999999992 22221 112223333222 234
Q ss_pred eEEEEeeccc-chhhhhHHHhhc---CCcceEEEEEecCCCchhhHHH-hhhHHHHHHHHhcCCccccccccccccCCCC
Q 001729 170 LRVVLMSATA-DITKYRDYFRDL---GRGERVEVLAIPSTNQRTIFQR-RVSYLEQVTELLGVDHGMTSELSSLRYCSGP 244 (1020)
Q Consensus 170 lkiIlmSATl-d~~~~~~~f~~~---~~~~~v~v~~~p~~~~~~~~~v-~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~ 244 (1020)
+++|+||||+ |.+.+++|++.. .+-.|++...... .....+.. +..-+.++... |.
T Consensus 378 ~~iIGMSATi~N~~lL~~~L~A~~y~t~fRPv~L~E~ik-~G~~i~~~~r~~~lr~ia~l---------------~~--- 438 (1008)
T KOG0950|consen 378 VQIIGMSATIPNNSLLQDWLDAFVYTTRFRPVPLKEYIK-PGSLIYESSRNKVLREIANL---------------YS--- 438 (1008)
T ss_pred eeEeeeecccCChHHHHHHhhhhheecccCcccchhccC-CCcccccchhhHHHHHhhhh---------------hh---
Confidence 7899999997 888999999752 1112232221110 00111111 10011111100 00
Q ss_pred CCcccccccChhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccc--------------------------
Q 001729 245 SPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKP-------------------------- 298 (1020)
Q Consensus 245 ~~~~~~~~~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~-------------------------- 298 (1020)
....+.+. . .++....+..++ +.++|||||++..++.++..+..
T Consensus 439 -~~~g~~dp-D-------~~v~L~tet~~e-~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~ 508 (1008)
T KOG0950|consen 439 -SNLGDEDP-D-------HLVGLCTETAPE-GSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRR 508 (1008)
T ss_pred -hhcccCCC-c-------ceeeehhhhhhc-CCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhc
Confidence 00000000 0 111111111122 34699999999998877654420
Q ss_pred ----------cccceEEEEeecccchHHHHHHHHhhhccc-eEEEEeccccccccccceeEEeecccceeeeeecccccc
Q 001729 299 ----------LSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKID 367 (1020)
Q Consensus 299 ----------~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~ 367 (1020)
..-.+.+.++|+|++.++|..+...|+.|- .|++||+++..|++.|..+++|-. |.-+.
T Consensus 509 ~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIira---------P~~g~- 578 (1008)
T KOG0950|consen 509 IPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRA---------PYVGR- 578 (1008)
T ss_pred CCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeC---------Ccccc-
Confidence 001246888999999999999999999998 999999999999999999999952 22222
Q ss_pred ceeeEEeehhHHHHhcCCCCcc---cCCeeEEeechhhc
Q 001729 368 SAELVWVSQSQAEQRRGRTGRT---CDGQVYRLVTKSFF 403 (1020)
Q Consensus 368 ~l~~~~iSkas~~QR~GRAGR~---~~G~c~rLys~~~~ 403 (1020)
...++.+|.||+|||||+ .-|.++.++.+.+.
T Consensus 579 ----~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~ 613 (1008)
T KOG0950|consen 579 ----EFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEK 613 (1008)
T ss_pred ----chhhhhhHHhhhhhhhhcccccCcceEEEeeccch
Confidence 234788999999999999 57999999987653
No 100
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.74 E-value=3.2e-18 Score=175.88 Aligned_cols=276 Identities=19% Similarity=0.269 Sum_probs=177.4
Q ss_pred hhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcC-----CccccccCCceehhhhHHHHH---hhccc-cccCcc
Q 001729 29 MSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN-----MEPILCTQPRRFAVVAVAKMV---AKGRN-CELGGE 99 (1020)
Q Consensus 29 ~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~-----~~~IivtqPrrlaa~sva~rv---a~e~~-~~lg~~ 99 (1020)
+++|.++++...-+-+++..|..|-|||..+.+.-++.. .-.++|...+|.+|-|+.+.. ++.+. ..+...
T Consensus 66 sevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVF 145 (387)
T KOG0329|consen 66 SEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVF 145 (387)
T ss_pred hHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEE
Confidence 467888888877789999999999999976666555432 226888888999998886544 44332 111111
Q ss_pred c-ceeccc-cccccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhccCCeEEEEeec
Q 001729 100 V-GYHIGH-SKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSA 177 (1020)
Q Consensus 100 V-gy~i~~-~~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmSA 177 (1020)
. |..|.. +.....-++|+|+|||+++.+.+++.+++.++.++|+||++...-..|....+-........+.|++.+||
T Consensus 146 fGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~tp~~KQvmmfsa 225 (387)
T KOG0329|consen 146 FGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSA 225 (387)
T ss_pred EcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHHHHHHHHHHHhhcCcccceeeeeee
Confidence 1 222322 22334578999999999999999998888899999999999544444555555455555667889999999
Q ss_pred ccchh--hhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCcccccccCh
Q 001729 178 TADIT--KYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKP 255 (1020)
Q Consensus 178 Tld~~--~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (1020)
|++.+ ...+-|- ..|+++.- .....-..+...-+|+.- .+..-
T Consensus 226 tlskeiRpvC~kFm----QdPmEi~v-DdE~KLtLHGLqQ~YvkL----------------------------ke~eK-- 270 (387)
T KOG0329|consen 226 TLSKEIRPVCHKFM----QDPMEIFV-DDEAKLTLHGLQQYYVKL----------------------------KENEK-- 270 (387)
T ss_pred ecchhhHHHHHhhh----cCchhhhc-cchhhhhhhhHHHHHHhh----------------------------hhhhh--
Confidence 98543 1222221 12222211 111111111112222210 00000
Q ss_pred hHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccceEEEEec
Q 001729 256 EVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATN 335 (1020)
Q Consensus 256 ~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~grkVLVATn 335 (1020)
...+.+++..+. ..+++||+.+...+ + | .++ +|||+
T Consensus 271 --Nrkl~dLLd~Le------FNQVvIFvKsv~Rl-----------------------~----------f--~kr-~vat~ 306 (387)
T KOG0329|consen 271 --NRKLNDLLDVLE------FNQVVIFVKSVQRL-----------------------S----------F--QKR-LVATD 306 (387)
T ss_pred --hhhhhhhhhhhh------hcceeEeeehhhhh-----------------------h----------h--hhh-hHHhh
Confidence 111122222221 24788998876540 0 2 124 99999
Q ss_pred cccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc-cCCeeEEeechh
Q 001729 336 IAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKS 401 (1020)
Q Consensus 336 iae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c~rLys~~ 401 (1020)
+..+|+||..|+.|++ ||.|.+.++| +||.|||||. ..|.++.+.+.+
T Consensus 307 lfgrgmdiervNi~~N--------Ydmp~~~DtY----------lHrv~rAgrfGtkglaitfvs~e 355 (387)
T KOG0329|consen 307 LFGRGMDIERVNIVFN--------YDMPEDSDTY----------LHRVARAGRFGTKGLAITFVSDE 355 (387)
T ss_pred hhccccCcccceeeec--------cCCCCCchHH----------HHHhhhhhccccccceeehhcch
Confidence 9999999999999999 9999977776 9999999999 579999887754
No 101
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.73 E-value=8.3e-17 Score=200.93 Aligned_cols=107 Identities=16% Similarity=0.154 Sum_probs=91.3
Q ss_pred cccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhcc--c-eEEEEeccccccccccceeEEeec
Q 001729 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSH--R-KVILATNIAESSVTIPKVAYVIDS 352 (1020)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~g--r-kVLVATniae~GIdIp~V~~VId~ 352 (1020)
..++||||.++..+..+.+.|+. ..++.+..+||+|+..+|.++++.|+.+ . +|+|||+++++|+|++.+++||+
T Consensus 493 ~~KvLVF~~~~~t~~~L~~~L~~-~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VIn- 570 (956)
T PRK04914 493 SEKVLVICAKAATALQLEQALRE-REGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVL- 570 (956)
T ss_pred CCeEEEEeCcHHHHHHHHHHHhh-ccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEE-
Confidence 36899999999999999999953 2468899999999999999999999863 4 99999999999999999999999
Q ss_pred ccceeeeeeccccccceeeEEeehhHHHHhcCCCCccc-CC--eeEEeechh
Q 001729 353 CRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DG--QVYRLVTKS 401 (1020)
Q Consensus 353 G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~-~G--~c~rLys~~ 401 (1020)
||.|.+...| .||+||+||.+ .| .+|.++.+.
T Consensus 571 -------fDlP~nP~~~----------eQRIGR~~RiGQ~~~V~i~~~~~~~ 605 (956)
T PRK04914 571 -------FDLPFNPDLL----------EQRIGRLDRIGQKHDIQIHVPYLEG 605 (956)
T ss_pred -------ecCCCCHHHH----------HHHhcccccCCCCceEEEEEccCCC
Confidence 9999866655 99999999983 33 455556553
No 102
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.72 E-value=5e-17 Score=174.61 Aligned_cols=310 Identities=18% Similarity=0.178 Sum_probs=187.2
Q ss_pred hhhhHHHHHHHHhhccEEEEecCCCCCCc--CChhhhhhhcCCccccccCCceehhhhHHHHHhhccccccCc-------
Q 001729 28 VMSLREKIVEKVLENRVTLIVGETGCGKS--SQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGG------- 98 (1020)
Q Consensus 28 i~~~Q~eil~~i~~~~~vII~apTGSGKT--t~ip~~lle~~~~~IivtqPrrlaa~sva~rva~e~~~~lg~------- 98 (1020)
.+|.|.+++.+.+.+.+++++.|||.||| +|+|.++.+ +. .+|+.|.-.+.....-.+ +.+|.....
T Consensus 95 frplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~ad-g~--alvi~plislmedqil~l-kqlgi~as~lnanssk 170 (695)
T KOG0353|consen 95 FRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCAD-GF--ALVICPLISLMEDQILQL-KQLGIDASMLNANSSK 170 (695)
T ss_pred cChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhcC-Cc--eEeechhHHHHHHHHHHH-HHhCcchhhccCcccH
Confidence 45679999999999999999999999999 455554433 32 344455332222111111 112211100
Q ss_pred -ccceeccccccccccceEEeeechhhhHH--HH---HhccccceeEEEEeecccccc-cccceeehh--hhhHhhccCC
Q 001729 99 -EVGYHIGHSKHLSERSKIVFKTAGVLLDE--MR---DRGLNALKYKVIILDEVHERS-VESDLVLVC--VKQLLLKKND 169 (1020)
Q Consensus 99 -~Vgy~i~~~~~~~~~t~Iiv~Tpg~Ll~~--l~---~~~l~l~~~s~IIIDEaHER~-l~~d~ll~~--lk~ll~~~~~ 169 (1020)
.+.+....-.......+++|.||+.+... +. .+.+....+.+|-|||+|.-+ +..||...+ +..+.+..+.
T Consensus 171 e~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~ 250 (695)
T KOG0353|consen 171 EEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKG 250 (695)
T ss_pred HHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHHHHHHhCCC
Confidence 00000000011234578999999988643 22 223444578999999999633 333444332 3444456788
Q ss_pred eEEEEeecccchhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCccc
Q 001729 170 LRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMA 249 (1020)
Q Consensus 170 lkiIlmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1020)
..+|+++||.....+.+.-+.++- ...+.+..+.. ...+.|.....|.
T Consensus 251 ~~iigltatatn~vl~d~k~il~i----------------------------e~~~tf~a~fn--r~nl~yev~qkp~-- 298 (695)
T KOG0353|consen 251 APIIGLTATATNHVLDDAKDILCI----------------------------EAAFTFRAGFN--RPNLKYEVRQKPG-- 298 (695)
T ss_pred CceeeeehhhhcchhhHHHHHHhH----------------------------HhhheeecccC--CCCceeEeeeCCC--
Confidence 999999999643333322211100 00000000000 0011111111111
Q ss_pred ccccChhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc-
Q 001729 250 NAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR- 328 (1020)
Q Consensus 250 ~~~~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr- 328 (1020)
...+.+++++..|...-. +..-+|||-++++++.++..|+ ..++....+|+.|.++++.-+-+.+..++
T Consensus 299 ------n~dd~~edi~k~i~~~f~--gqsgiiyc~sq~d~ekva~alk--n~gi~a~~yha~lep~dks~~hq~w~a~ei 368 (695)
T KOG0353|consen 299 ------NEDDCIEDIAKLIKGDFA--GQSGIIYCFSQKDCEKVAKALK--NHGIHAGAYHANLEPEDKSGAHQGWIAGEI 368 (695)
T ss_pred ------ChHHHHHHHHHHhccccC--CCcceEEEeccccHHHHHHHHH--hcCccccccccccCccccccccccccccce
Confidence 111233344433333322 3466999999999999999998 45588889999999999988888888888
Q ss_pred eEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHH---------------------------
Q 001729 329 KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQ--------------------------- 381 (1020)
Q Consensus 329 kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~Q--------------------------- 381 (1020)
.|||||-...+|||-|+|++||+ ...+..+ .+|.|
T Consensus 369 qvivatvafgmgidkpdvrfvih--------hsl~ksi----------enyyqasarillrmtkqknksdtggstqinil 430 (695)
T KOG0353|consen 369 QVIVATVAFGMGIDKPDVRFVIH--------HSLPKSI----------ENYYQASARILLRMTKQKNKSDTGGSTQINIL 430 (695)
T ss_pred EEEEEEeeecccCCCCCeeEEEe--------cccchhH----------HHHHHHHHHHHHHHhhhcccccCCCcceeehh
Confidence 99999999999999999999998 4445433 33466
Q ss_pred ----------------hcCCCCcc-cCCeeEEeechh
Q 001729 382 ----------------RRGRTGRT-CDGQVYRLVTKS 401 (1020)
Q Consensus 382 ----------------R~GRAGR~-~~G~c~rLys~~ 401 (1020)
..|||||. .+..|+..|.=.
T Consensus 431 evctnfkiffavfsekesgragrd~~~a~cilyy~~~ 467 (695)
T KOG0353|consen 431 EVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFA 467 (695)
T ss_pred hhhccceeeeeeecchhccccccCCCcccEEEEechH
Confidence 78999999 788999888743
No 103
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.70 E-value=5.3e-17 Score=201.71 Aligned_cols=315 Identities=21% Similarity=0.238 Sum_probs=176.4
Q ss_pred cCcchhhhHHHHHHHHhh---cc-EEEEecCCCCCCcCChhhhhh---hc---CCccccccCCceehhhhHHHHHhhccc
Q 001729 24 SSLPVMSLREKIVEKVLE---NR-VTLIVGETGCGKSSQVPQFLL---AE---NMEPILCTQPRRFAVVAVAKMVAKGRN 93 (1020)
Q Consensus 24 ~~LPi~~~Q~eil~~i~~---~~-~vII~apTGSGKTt~ip~~ll---e~---~~~~IivtqPrrlaa~sva~rva~e~~ 93 (1020)
..-+.++.|..+++.+.. .+ .+++.||||+|||++...+.+ +. ...+++.+.|.+.+..++++++....+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~ 271 (733)
T COG1203 192 IEHEGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFG 271 (733)
T ss_pred cCchhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhc
Confidence 344567788888888764 35 899999999999966555433 33 245899999999999999999876433
Q ss_pred c--ccCc-ccceec----ccccc---c----cc-----c-ceEEeeechhhhHHHHHhc---cccceeEEEEeecccccc
Q 001729 94 C--ELGG-EVGYHI----GHSKH---L----SE-----R-SKIVFKTAGVLLDEMRDRG---LNALKYKVIILDEVHERS 150 (1020)
Q Consensus 94 ~--~lg~-~Vgy~i----~~~~~---~----~~-----~-t~Iiv~Tpg~Ll~~l~~~~---l~l~~~s~IIIDEaHER~ 150 (1020)
. ..+. ..|... ...+. . .. - +-++++|.+.+........ +.....+++|+||+|-
T Consensus 272 ~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~-- 349 (733)
T COG1203 272 LFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHL-- 349 (733)
T ss_pred ccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHh--
Confidence 2 1111 111110 00000 0 00 0 1222223333321111111 1123679999999993
Q ss_pred cccc-eeehhhhhHh-hccCCeEEEEeecccchhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCC
Q 001729 151 VESD-LVLVCVKQLL-LKKNDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVD 228 (1020)
Q Consensus 151 l~~d-~ll~~lk~ll-~~~~~lkiIlmSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~ 228 (1020)
.+.+ .+..+++.+. ...-+.++|+||||++......+....+.+..+.. ..+..+...-..+.....
T Consensus 350 ~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~---------- 418 (733)
T COG1203 350 YADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVE-NAKFCPKEDEPGLKRKER---------- 418 (733)
T ss_pred hcccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceec-cccccccccccccccccc----------
Confidence 3333 2222222221 12347899999999975443333333222111111 000000000000000000
Q ss_pred ccccccccccccCCCCCCcccccccChhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEe
Q 001729 229 HGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHIL 308 (1020)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~l 308 (1020)
.+..+.. . ......+... ...++++||.+||+..+.++++.|+.... .+..+
T Consensus 419 -----------------~~~~~~~-----~---~~~~~~~~~~-~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~--~v~Ll 470 (733)
T COG1203 419 -----------------VDVEDGP-----Q---EELIELISEE-VKEGKKVLVIVNTVDRAIELYEKLKEKGP--KVLLL 470 (733)
T ss_pred -----------------hhhhhhh-----h---Hhhhhcchhh-hccCCcEEEEEecHHHHHHHHHHHHhcCC--CEEEE
Confidence 0000000 0 0111111111 12257999999999999999999986554 79999
Q ss_pred ecccchHHHHHHHHhhh----ccc-eEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhc
Q 001729 309 HSSVDTEQALMAMKICK----SHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRR 383 (1020)
Q Consensus 309 Hs~l~~~er~~i~~~f~----~gr-kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~ 383 (1020)
||.+....|.+.++... ... .|+|||.+.|.||||. .+++|= + ...++++ .||+
T Consensus 471 HSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mIT---------e-~aPidSL----------IQR~ 529 (733)
T COG1203 471 HSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLIT---------E-LAPIDSL----------IQRA 529 (733)
T ss_pred ecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeee---------c-CCCHHHH----------HHHH
Confidence 99999999888776433 334 9999999999999995 677761 1 3334444 9999
Q ss_pred CCCCccc---CCeeEEeech
Q 001729 384 GRTGRTC---DGQVYRLVTK 400 (1020)
Q Consensus 384 GRAGR~~---~G~c~rLys~ 400 (1020)
||++|.+ +|..|..-..
T Consensus 530 GRv~R~g~~~~~~~~v~~~~ 549 (733)
T COG1203 530 GRVNRHGKKENGKIYVYNDE 549 (733)
T ss_pred HHHhhcccccCCceeEeecc
Confidence 9999996 5666655443
No 104
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.65 E-value=3.4e-16 Score=190.55 Aligned_cols=125 Identities=15% Similarity=0.147 Sum_probs=88.3
Q ss_pred ccCcchhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcC--CccccccCCceehhhhHHHHHhhccccccCccc
Q 001729 23 FSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN--MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEV 100 (1020)
Q Consensus 23 r~~LPi~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~--~~~IivtqPrrlaa~sva~rva~e~~~~lg~~V 100 (1020)
+..|-+++|-.+++-.+.=++--|..++||+|||.++..+++... ...+.|+.|++.+|.+.++.+.... ..+|..|
T Consensus 76 ~R~lg~~~ydvQliGg~~Lh~G~Iaem~TGeGKTL~a~Lpa~~~al~G~~V~VvTpn~yLA~qd~e~m~~l~-~~lGLtv 154 (896)
T PRK13104 76 LRTLGLRHFDVQLIGGMVLHEGNIAEMRTGEGKTLVATLPAYLNAISGRGVHIVTVNDYLAKRDSQWMKPIY-EFLGLTV 154 (896)
T ss_pred HHHcCCCcchHHHhhhhhhccCccccccCCCCchHHHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHh-cccCceE
Confidence 445667777777888877667779999999999976666655332 2357788899999999988776543 2355566
Q ss_pred ceeccccc----cccccceEEeeechhh-hHHHHHh-cccc-----ceeEEEEeecccc
Q 001729 101 GYHIGHSK----HLSERSKIVFKTAGVL-LDEMRDR-GLNA-----LKYKVIILDEVHE 148 (1020)
Q Consensus 101 gy~i~~~~----~~~~~t~Iiv~Tpg~L-l~~l~~~-~l~l-----~~~s~IIIDEaHE 148 (1020)
|..++... ...-.++|+|+||+.| .+.+.+. .+.+ ..+.++||||||.
T Consensus 155 ~~i~gg~~~~~r~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDs 213 (896)
T PRK13104 155 GVIYPDMSHKEKQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDS 213 (896)
T ss_pred EEEeCCCCHHHHHHHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhh
Confidence 65543321 1223589999999999 7777655 2222 3789999999994
No 105
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.65 E-value=9.2e-16 Score=167.60 Aligned_cols=292 Identities=17% Similarity=0.228 Sum_probs=172.0
Q ss_pred cccccCCceehhhhHHHHHhhcccc----ccC--cccc-eecc-ccccccccceEEeeechhhhHHHHHhccccceeEEE
Q 001729 70 PILCTQPRRFAVVAVAKMVAKGRNC----ELG--GEVG-YHIG-HSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVI 141 (1020)
Q Consensus 70 ~IivtqPrrlaa~sva~rva~e~~~----~lg--~~Vg-y~i~-~~~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~I 141 (1020)
..+++.|.|.+|.+....+.+..-- .+. -.+| ...+ +-+....+++|+|+|||+|++.+..+.+.+.....+
T Consensus 288 ~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crFl 367 (725)
T KOG0349|consen 288 EAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRFL 367 (725)
T ss_pred ceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEEE
Confidence 4566777788888887766543211 111 0111 1111 223446789999999999999998887777799999
Q ss_pred Eeecccccc--cccceeehhhhhH---hhccCCeEEEEeecccc---hhhhhHHHhhcCCcceEEEEE---ecCCC----
Q 001729 142 ILDEVHERS--VESDLVLVCVKQL---LLKKNDLRVVLMSATAD---ITKYRDYFRDLGRGERVEVLA---IPSTN---- 206 (1020)
Q Consensus 142 IIDEaHER~--l~~d~ll~~lk~l---l~~~~~lkiIlmSATld---~~~~~~~f~~~~~~~~v~v~~---~p~~~---- 206 (1020)
++||++--. .+.|++..+-+.+ ......++.++.|||+. ..++.+-.-.. +..|.+.. +|...
T Consensus 368 vlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhf--ptwVdLkgeD~vpetvHhvv 445 (725)
T KOG0349|consen 368 VLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHF--PTWVDLKGEDLVPETVHHVV 445 (725)
T ss_pred EecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccC--ceeEecccccccchhhccce
Confidence 999999311 1233333332222 22334589999999973 33333221100 00011000 00000
Q ss_pred ------chhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCcccccccChhHHHHH--HHhhhhhccCCcccccc
Q 001729 207 ------QRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLI--HDLVLHIHKNESDIEKS 278 (1020)
Q Consensus 207 ------~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li--~~ll~~i~~~~~~~~g~ 278 (1020)
.+..+ .+..+.++.+..-..+... .+ ............++ +..+..|.+.. -.+
T Consensus 446 ~lv~p~~d~sw-------~~lr~~i~td~vh~kdn~~----pg----~~Spe~~s~a~kilkgEy~v~ai~~h~---mdk 507 (725)
T KOG0349|consen 446 KLVCPSVDGSW-------CDLRQFIETDKVHTKDNLL----PG----QVSPENPSSATKILKGEYGVVAIRRHA---MDK 507 (725)
T ss_pred eecCCccCccH-------HHHhhhhccCCcccccccc----cc----cCCCCChhhhhHHhcCchhhhhhhhhc---cCc
Confidence 00001 0011111111000000000 00 00000000001111 11222333322 258
Q ss_pred EEEEecchhhHHHhhhhcccc-ccceEEEEeecccchHHHHHHHHhhhccc-eEEEEeccccccccccceeEEeecccce
Q 001729 279 ILVFLPTYYALEQQWHLMKPL-SSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSL 356 (1020)
Q Consensus 279 iLVFl~~~~~ie~l~~~L~~~-~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVLVATniae~GIdIp~V~~VId~G~~k 356 (1020)
.+|||.++.+++.+.+++... ...+.++.+||+..+.||++.++.|+... +.+|||++|++|+||-++-|+|+
T Consensus 508 aiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~in----- 582 (725)
T KOG0349|consen 508 AIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMIN----- 582 (725)
T ss_pred eEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEE-----
Confidence 999999999999999988754 34688999999999999999999999888 99999999999999999999998
Q ss_pred eeeeeccccccceeeEEeehhHHHHhcCCCCcc-cCCeeEEeec
Q 001729 357 QVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVT 399 (1020)
Q Consensus 357 ~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c~rLys 399 (1020)
...|. .|.+|.||+||.||. +-|.++.|+.
T Consensus 583 ---vtlpd----------~k~nyvhrigrvgraermglaislva 613 (725)
T KOG0349|consen 583 ---VTLPD----------DKTNYVHRIGRVGRAERMGLAISLVA 613 (725)
T ss_pred ---EecCc----------ccchhhhhhhccchhhhcceeEEEee
Confidence 22333 456779999999999 7799998865
No 106
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.65 E-value=7.7e-16 Score=182.23 Aligned_cols=367 Identities=15% Similarity=0.188 Sum_probs=197.0
Q ss_pred cCcchhhhHHHHHHHHh----h-ccEEEEecCCCCCCcCChhhhh---hhc-CCccccccCCceehhhhHHHHHhhcccc
Q 001729 24 SSLPVMSLREKIVEKVL----E-NRVTLIVGETGCGKSSQVPQFL---LAE-NMEPILCTQPRRFAVVAVAKMVAKGRNC 94 (1020)
Q Consensus 24 ~~LPi~~~Q~eil~~i~----~-~~~vII~apTGSGKTt~ip~~l---le~-~~~~IivtqPrrlaa~sva~rva~e~~~ 94 (1020)
...-.+.||..++..+. + ++.++|++.||+|||..+.+++ +.. ..++|+++.-|..+..|....+...+-
T Consensus 162 s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P- 240 (875)
T COG4096 162 SAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLP- 240 (875)
T ss_pred ccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCC-
Confidence 44556788998887765 2 3569999999999995444443 233 336899999999998887766555432
Q ss_pred ccCcccceeccccccccccceEEeeechhhhHHHHHh-----ccccceeEEEEeecccccccccceeehhhhhHhhccCC
Q 001729 95 ELGGEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDR-----GLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKND 169 (1020)
Q Consensus 95 ~lg~~Vgy~i~~~~~~~~~t~Iiv~Tpg~Ll~~l~~~-----~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~ 169 (1020)
-|..+... ........++|.++|.+.+...+... .+....+++||||||| |++..+.- .++.- ..
T Consensus 241 -~~~~~n~i--~~~~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaH-Rgi~~~~~-~I~dY----Fd- 310 (875)
T COG4096 241 -FGTKMNKI--EDKKGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAH-RGIYSEWS-SILDY----FD- 310 (875)
T ss_pred -Cccceeee--ecccCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhh-hhHHhhhH-HHHHH----HH-
Confidence 22211111 12222336899999999998876643 2333479999999999 88765433 22221 11
Q ss_pred eEEEEeecccchhh---hhHHHhhcCCcceEEEEEecCC-CchhhHHHhhhHHHHHHHHhcCCccccccccccccCCC--
Q 001729 170 LRVVLMSATADITK---YRDYFRDLGRGERVEVLAIPST-NQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSG-- 243 (1020)
Q Consensus 170 lkiIlmSATld~~~---~~~~f~~~~~~~~v~v~~~p~~-~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~-- 243 (1020)
.-+++++||+..+. =-.||+ +.|+........ ..+...|..+.-++--...-|......++.........
T Consensus 311 A~~~gLTATP~~~~d~~T~~~F~----g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~ 386 (875)
T COG4096 311 AATQGLTATPKETIDRSTYGFFN----GEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDE 386 (875)
T ss_pred HHHHhhccCcccccccccccccC----CCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCc
Confidence 12355599974321 223443 122211110000 00000000000000000000000000000000000000
Q ss_pred CCCccccc-----ccChhHHHHHHHhhhhhccC--CccccccEEEEecchhhHHHhhhhccccccceE---EEEeecccc
Q 001729 244 PSPSMANA-----EIKPEVHKLIHDLVLHIHKN--ESDIEKSILVFLPTYYALEQQWHLMKPLSSFFK---VHILHSSVD 313 (1020)
Q Consensus 244 ~~~~~~~~-----~~~~~~~~li~~ll~~i~~~--~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~---v~~lHs~l~ 313 (1020)
....+... .......+.+...+.+.... ..+..+++||||.+..+++.++..|....+.+. +..+.+.-.
T Consensus 387 dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~ 466 (875)
T COG4096 387 DDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAE 466 (875)
T ss_pred ccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccch
Confidence 00000000 11112234444555554444 222257999999999999999999875443322 444455433
Q ss_pred hHHHHHHHHhhhc-cc--eEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCccc
Q 001729 314 TEQALMAMKICKS-HR--KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC 390 (1020)
Q Consensus 314 ~~er~~i~~~f~~-gr--kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~ 390 (1020)
..+ ..++.|.. .+ +|.++.+++.||||+|.|..+|- +..- -|+.-|+||+||+-|..
T Consensus 467 ~~q--~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF---------~r~V---------rSktkF~QMvGRGTRl~ 526 (875)
T COG4096 467 QAQ--ALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVF---------DRKV---------RSKTKFKQMVGRGTRLC 526 (875)
T ss_pred hhH--HHHHHHHhcCCCCceEEehhhhhcCCCchheeeeee---------hhhh---------hhHHHHHHHhcCccccC
Confidence 332 23445533 34 99999999999999999999883 3221 18889999999999984
Q ss_pred C--C-----e-eEEeech---hhcccccccCCcceehhhHhHHHHH
Q 001729 391 D--G-----Q-VYRLVTK---SFFGTLEDHECPAILRLSLRLQVLL 425 (1020)
Q Consensus 391 ~--G-----~-c~rLys~---~~~~~l~~~~~PEI~r~~L~~~vL~ 425 (1020)
+ | + -|.++.= -.|-.|.+...++-.+.+|..-++.
T Consensus 527 ~~~~~~~~dK~~F~ifDf~~~~~~~~~~~~~~e~~~~~~l~~rLF~ 572 (875)
T COG4096 527 PDLGGPEQDKEFFTIFDFVDNTEYFEMDPEMREGRVRVSLEQRLFA 572 (875)
T ss_pred ccccCccccceeEEEEEhhhhhhhhccCcccccccccchHHHHHhh
Confidence 3 2 2 3444432 2334555566666666666655443
No 107
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.63 E-value=2.9e-16 Score=160.30 Aligned_cols=153 Identities=23% Similarity=0.280 Sum_probs=107.8
Q ss_pred hhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcC----CccccccCCceehhhhHHHHHhhccccccCcccceec
Q 001729 29 MSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN----MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHI 104 (1020)
Q Consensus 29 ~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~----~~~IivtqPrrlaa~sva~rva~e~~~~lg~~Vgy~i 104 (1020)
+++|.++++.+.+++++++.||||+|||+.+..+++... ...++++.|++.++.++.+++...... .+..+....
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~-~~~~~~~~~ 79 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSN-TNVRVVLLH 79 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTT-TTSSEEEES
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccc-ccccccccc
Confidence 578999999999999999999999999988777765432 238999999999999999888776553 111222211
Q ss_pred ccc-------ccccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhH---hhccCCeEEEE
Q 001729 105 GHS-------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQL---LLKKNDLRVVL 174 (1020)
Q Consensus 105 ~~~-------~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~l---l~~~~~lkiIl 174 (1020)
+.. .....+.+|+|+||++|++.+......+.++++|||||+|+.... ++.. .++.+ +....+.++|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~-~~~~-~~~~i~~~~~~~~~~~~i~ 157 (169)
T PF00270_consen 80 GGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDE-TFRA-MLKSILRRLKRFKNIQIIL 157 (169)
T ss_dssp TTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHT-THHH-HHHHHHHHSHTTTTSEEEE
T ss_pred ccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccc-cHHH-HHHHHHHHhcCCCCCcEEE
Confidence 111 112346999999999999998875445567999999999954432 2222 22222 22234689999
Q ss_pred eecccchhhhh
Q 001729 175 MSATADITKYR 185 (1020)
Q Consensus 175 mSATld~~~~~ 185 (1020)
||||+. ..+.
T Consensus 158 ~SAT~~-~~~~ 167 (169)
T PF00270_consen 158 LSATLP-SNVE 167 (169)
T ss_dssp EESSST-HHHH
T ss_pred EeeCCC-hhHh
Confidence 999987 5443
No 108
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.62 E-value=1.6e-15 Score=184.03 Aligned_cols=105 Identities=24% Similarity=0.250 Sum_probs=88.6
Q ss_pred cccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccceEEEEecccccccccc---cee-----
Q 001729 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATNIAESSVTIP---KVA----- 347 (1020)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~grkVLVATniae~GIdIp---~V~----- 347 (1020)
+.++||||++.+.++.++..|.. .++....+|+.+...++..+..+++.| .|+||||+|++|+||+ +|.
T Consensus 440 g~pvLI~t~si~~se~ls~~L~~--~gi~~~~Lna~~~~~Ea~ii~~ag~~g-~VtIATnmAGRGtDI~l~~~V~~~GGL 516 (796)
T PRK12906 440 GQPVLVGTVAIESSERLSHLLDE--AGIPHAVLNAKNHAKEAEIIMNAGQRG-AVTIATNMAGRGTDIKLGPGVKELGGL 516 (796)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHH--CCCCeeEecCCcHHHHHHHHHhcCCCc-eEEEEeccccCCCCCCCCcchhhhCCc
Confidence 46999999999999999999984 457788999998877777766666554 5999999999999994 899
Q ss_pred EEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc-cCCeeEEeechh
Q 001729 348 YVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKS 401 (1020)
Q Consensus 348 ~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c~rLys~~ 401 (1020)
+||. |+.+. |+..+.||.|||||. .||.+..+++-+
T Consensus 517 hVI~--------te~pe----------s~ri~~Ql~GRtGRqG~~G~s~~~~sle 553 (796)
T PRK12906 517 AVIG--------TERHE----------SRRIDNQLRGRSGRQGDPGSSRFYLSLE 553 (796)
T ss_pred EEEe--------eecCC----------cHHHHHHHhhhhccCCCCcceEEEEecc
Confidence 9998 77776 555669999999999 689998888865
No 109
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.59 E-value=3.1e-14 Score=175.40 Aligned_cols=332 Identities=14% Similarity=0.092 Sum_probs=171.9
Q ss_pred hhhHHHHHHHHh----h------ccEEEEecCCCCCCcCChhhh---hhh-cCCccccccCCceehhhhHHHHHhhcccc
Q 001729 29 MSLREKIVEKVL----E------NRVTLIVGETGCGKSSQVPQF---LLA-ENMEPILCTQPRRFAVVAVAKMVAKGRNC 94 (1020)
Q Consensus 29 ~~~Q~eil~~i~----~------~~~vII~apTGSGKTt~ip~~---lle-~~~~~IivtqPrrlaa~sva~rva~e~~~ 94 (1020)
..+|.+++..+. + .+..+|..+||||||..+... ++. ....+|+++.||..+..|..+.+......
T Consensus 240 r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~~~ 319 (667)
T TIGR00348 240 RYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSLQKD 319 (667)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhCCC
Confidence 456777777653 2 357999999999999544333 232 23358999999999999998887664321
Q ss_pred ccCcccceecccccc-ccccceEEeeechhhhHHHHHh--ccccc-eeEEEEeecccccccccceeehhhhhHhhccCCe
Q 001729 95 ELGGEVGYHIGHSKH-LSERSKIVFKTAGVLLDEMRDR--GLNAL-KYKVIILDEVHERSVESDLVLVCVKQLLLKKNDL 170 (1020)
Q Consensus 95 ~lg~~Vgy~i~~~~~-~~~~t~Iiv~Tpg~Ll~~l~~~--~l~l~-~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~l 170 (1020)
.+ ..++..-..... ......|+|+|.+.|.+.+... ..... .-.+||+|||| |+...++ .+.+....++.
T Consensus 320 ~~-~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaH-rs~~~~~----~~~l~~~~p~a 393 (667)
T TIGR00348 320 CA-ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAH-RSQYGEL----AKNLKKALKNA 393 (667)
T ss_pred CC-cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCc-cccchHH----HHHHHhhCCCC
Confidence 11 001110001111 1235789999999998654321 11111 12389999999 7654432 22333345678
Q ss_pred EEEEeecccch----hhhhHHHh----hc----------CCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCC--cc
Q 001729 171 RVVLMSATADI----TKYRDYFR----DL----------GRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVD--HG 230 (1020)
Q Consensus 171 kiIlmSATld~----~~~~~~f~----~~----------~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~--~~ 230 (1020)
..+++|||+-. ..+ ..|+ .. ..+..+++.+.+..... ......++...+..... ..
T Consensus 394 ~~lGfTaTP~~~~d~~t~-~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~---~~~~~~l~~~~~~~~~~~~~~ 469 (667)
T TIGR00348 394 SFFGFTGTPIFKKDRDTS-LTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPED---HLDRKKLDAFFDEIFELLPER 469 (667)
T ss_pred cEEEEeCCCccccccccc-ccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhh---ccChHHHHHHHHHHHHhhhcc
Confidence 89999999732 111 2222 11 11222333322211000 00000000000000000 00
Q ss_pred ccc---cccccccCCCCCCcccccccChhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccc---eE
Q 001729 231 MTS---ELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSF---FK 304 (1020)
Q Consensus 231 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~---~~ 304 (1020)
... ..+...+.... .. ..........+..++.+........+++.+|||.++.++..+.+.|...... ..
T Consensus 470 ~~~~~~~~l~~~~~~~~--~~--~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~ 545 (667)
T TIGR00348 470 IREITKESLKEKLQKTK--KI--LFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEAS 545 (667)
T ss_pred ccHHHHHHHHHHHHHHH--hh--hcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCe
Confidence 000 00000000000 00 0000111222333444433222222478999999999999888877543221 23
Q ss_pred EEEeecccchH---------------------HHHHHHHhhhc-cc-eEEEEeccccccccccceeEEeecccceeeeee
Q 001729 305 VHILHSSVDTE---------------------QALMAMKICKS-HR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWD 361 (1020)
Q Consensus 305 v~~lHs~l~~~---------------------er~~i~~~f~~-gr-kVLVATniae~GIdIp~V~~VId~G~~k~~~yd 361 (1020)
...++++...+ ....+.+.|+. +. +|||.++.+.||+|.|.+.+++ .|
T Consensus 546 ~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLy---------ld 616 (667)
T TIGR00348 546 AIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLY---------LD 616 (667)
T ss_pred eEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEE---------Ee
Confidence 44444433221 12356677865 44 9999999999999999999988 45
Q ss_pred ccccccceeeEEeehhHHHHhcCCCCcc-cCCe
Q 001729 362 VNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQ 393 (1020)
Q Consensus 362 ~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~ 393 (1020)
-+..-. .++|.+||+-|. .+|+
T Consensus 617 Kplk~h----------~LlQai~R~nR~~~~~K 639 (667)
T TIGR00348 617 KPLKYH----------GLLQAIARTNRIDGKDK 639 (667)
T ss_pred cccccc----------HHHHHHHHhccccCCCC
Confidence 444322 349999999995 5555
No 110
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.59 E-value=3.8e-15 Score=181.51 Aligned_cols=123 Identities=15% Similarity=0.110 Sum_probs=81.4
Q ss_pred CcchhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhh-hc-CCccccccCCceehhhhHHHHHhhccccccCcccce
Q 001729 25 SLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLL-AE-NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (1020)
Q Consensus 25 ~LPi~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~ll-e~-~~~~IivtqPrrlaa~sva~rva~e~~~~lg~~Vgy 102 (1020)
.|-++++-.+++-.+.=++--|..+.||+|||..+..+++ .. ....+-++.|++.+|.+.++.+.... ..+|..||.
T Consensus 77 ~lg~~~~dvQlig~l~L~~G~Iaem~TGeGKTLva~lpa~l~aL~G~~V~IvTpn~yLA~rd~e~~~~l~-~~LGlsv~~ 155 (830)
T PRK12904 77 VLGMRHFDVQLIGGMVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLY-EFLGLSVGV 155 (830)
T ss_pred HhCCCCCccHHHhhHHhcCCchhhhhcCCCcHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHH-hhcCCeEEE
Confidence 3445555556666665455569999999999966555543 22 22356688899999999888776543 245555665
Q ss_pred eccccc----cccccceEEeeechhh-hHHHHHhc------cccceeEEEEeecccc
Q 001729 103 HIGHSK----HLSERSKIVFKTAGVL-LDEMRDRG------LNALKYKVIILDEVHE 148 (1020)
Q Consensus 103 ~i~~~~----~~~~~t~Iiv~Tpg~L-l~~l~~~~------l~l~~~s~IIIDEaHE 148 (1020)
.++..+ ...-.++|+|+|++.| .+.+.+.. .....+.++||||||.
T Consensus 156 i~~~~~~~er~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDs 212 (830)
T PRK12904 156 ILSGMSPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDS 212 (830)
T ss_pred EcCCCCHHHHHHhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhh
Confidence 543221 1122489999999999 77776442 1234789999999994
No 111
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.58 E-value=1.5e-14 Score=171.53 Aligned_cols=164 Identities=15% Similarity=0.122 Sum_probs=111.9
Q ss_pred CcchhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhh----hhcCCccccccCCceehhhhHHHHHhhcc-cccc--C
Q 001729 25 SLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFL----LAENMEPILCTQPRRFAVVAVAKMVAKGR-NCEL--G 97 (1020)
Q Consensus 25 ~LPi~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~l----le~~~~~IivtqPrrlaa~sva~rva~e~-~~~l--g 97 (1020)
.+-....|.+.+..+..+..++|+|||.+|||+.-+..+ .+...+.+|.+.|+..+..|++..+-... ...+ |
T Consensus 509 dF~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg 588 (1330)
T KOG0949|consen 509 DFCPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRG 588 (1330)
T ss_pred ccCCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccc
Confidence 366778999999999999999999999999997543332 33344578899999999888866554332 2111 1
Q ss_pred cc-cceeccccccccccceEEeeechhhhHHHHHhc---cccceeEEEEeecccccccccceeehhhhhHhhccCCeEEE
Q 001729 98 GE-VGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRG---LNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVV 173 (1020)
Q Consensus 98 ~~-Vgy~i~~~~~~~~~t~Iiv~Tpg~Ll~~l~~~~---l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiI 173 (1020)
.. .|-..+.-+....+++|+|+-|+.+-..+...+ -...++++||+||+|.-+ .+-.+++...+..--.+.++
T Consensus 589 ~sl~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG---~~ed~l~~Eqll~li~CP~L 665 (1330)
T KOG0949|consen 589 VSLLGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIG---NEEDGLLWEQLLLLIPCPFL 665 (1330)
T ss_pred hhhHhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhcc---ccccchHHHHHHHhcCCCee
Confidence 11 121112222224579999999999988877632 123489999999999322 22233333333334467899
Q ss_pred Eeeccc-chhhhhHHHhhc
Q 001729 174 LMSATA-DITKYRDYFRDL 191 (1020)
Q Consensus 174 lmSATl-d~~~~~~~f~~~ 191 (1020)
++|||+ |+..+..|.+..
T Consensus 666 ~LSATigN~~l~qkWlnq~ 684 (1330)
T KOG0949|consen 666 VLSATIGNPNLFQKWLNQR 684 (1330)
T ss_pred EEecccCCHHHHHHHHHHH
Confidence 999998 899999999854
No 112
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.54 E-value=3e-14 Score=172.29 Aligned_cols=156 Identities=21% Similarity=0.207 Sum_probs=108.4
Q ss_pred cCcchhhhHHHHHHHHhhc----cEEEEecCCCCCCcCChhhhhhh---cCCccccccCCceehhhhHHHHHhhcccccc
Q 001729 24 SSLPVMSLREKIVEKVLEN----RVTLIVGETGCGKSSQVPQFLLA---ENMEPILCTQPRRFAVVAVAKMVAKGRNCEL 96 (1020)
Q Consensus 24 ~~LPi~~~Q~eil~~i~~~----~~vII~apTGSGKTt~ip~~lle---~~~~~IivtqPrrlaa~sva~rva~e~~~~l 96 (1020)
..+.+..-|..+++.+.+. ...++.|-||||||-.+.+.+.+ .| +.++++.|--.+.-|+.+|+...+|..+
T Consensus 195 ~~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G-kqvLvLVPEI~Ltpq~~~rf~~rFg~~v 273 (730)
T COG1198 195 EWLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG-KQVLVLVPEIALTPQLLARFKARFGAKV 273 (730)
T ss_pred cccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcC-CEEEEEeccccchHHHHHHHHHHhCCCh
Confidence 3577889999999999766 78999999999999777766644 34 4678888887778888899888777655
Q ss_pred Ccccceec---c---ccccccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehh-hhh---Hhhc
Q 001729 97 GGEVGYHI---G---HSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVC-VKQ---LLLK 166 (1020)
Q Consensus 97 g~~Vgy~i---~---~~~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~-lk~---ll~~ 166 (1020)
+..-+.-- + .........+|+++|---+. .++.++++|||||-|+-+...+-...+ .+. +...
T Consensus 274 ~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-------~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~ 346 (730)
T COG1198 274 AVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAK 346 (730)
T ss_pred hhhcccCChHHHHHHHHHHhcCCceEEEEechhhc-------CchhhccEEEEeccccccccCCcCCCcCHHHHHHHHHH
Confidence 43221110 1 11233567899999965553 245589999999999755443321111 222 2333
Q ss_pred cCCeEEEEeecccchhhhhHH
Q 001729 167 KNDLRVVLMSATADITKYRDY 187 (1020)
Q Consensus 167 ~~~lkiIlmSATld~~~~~~~ 187 (1020)
..+..+|+-|||+..+.+.+.
T Consensus 347 ~~~~pvvLgSATPSLES~~~~ 367 (730)
T COG1198 347 KENAPVVLGSATPSLESYANA 367 (730)
T ss_pred HhCCCEEEecCCCCHHHHHhh
Confidence 457899999999987766665
No 113
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.51 E-value=2.3e-13 Score=154.07 Aligned_cols=279 Identities=15% Similarity=0.157 Sum_probs=166.6
Q ss_pred ccEEEEecCCCCCCcCChhhhhhhcCCccccccCCceehhhhHHHHHhhccccccCcccceeccccccccccceEEeeec
Q 001729 42 NRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVFKTA 121 (1020)
Q Consensus 42 ~~~vII~apTGSGKTt~ip~~lle~~~~~IivtqPrrlaa~sva~rva~e~~~~lg~~Vgy~i~~~~~~~~~t~Iiv~Tp 121 (1020)
.+.+.-+|||.||||+-..+-+.+... -++.-|.|++|..++.|+.. .|.+..-..|-..++..-....+..+-||-
T Consensus 191 RkIi~H~GPTNSGKTy~ALqrl~~aks--GvycGPLrLLA~EV~~r~na-~gipCdL~TGeE~~~~~~~~~~a~hvScTV 267 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTYRALQRLKSAKS--GVYCGPLRLLAHEVYDRLNA-LGIPCDLLTGEERRFVLDNGNPAQHVSCTV 267 (700)
T ss_pred heEEEEeCCCCCchhHHHHHHHhhhcc--ceecchHHHHHHHHHHHhhh-cCCCccccccceeeecCCCCCcccceEEEE
Confidence 366777999999999888887766543 36667999999999999855 343333333322222222233478888999
Q ss_pred hhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhcc-CCeEEEEeecccchhhhhHHHhhcCCcceEEEE
Q 001729 122 GVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKK-NDLRVVLMSATADITKYRDYFRDLGRGERVEVL 200 (1020)
Q Consensus 122 g~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~-~~lkiIlmSATld~~~~~~~f~~~~~~~~v~v~ 200 (1020)
+|.-- -..|++.||||++ .+-+.+-.-++-+.++-.. .++.+-+=-|-
T Consensus 268 EM~sv--------~~~yeVAViDEIQ-mm~Dp~RGwAWTrALLGl~AdEiHLCGepsv---------------------- 316 (700)
T KOG0953|consen 268 EMVSV--------NTPYEVAVIDEIQ-MMRDPSRGWAWTRALLGLAADEIHLCGEPSV---------------------- 316 (700)
T ss_pred EEeec--------CCceEEEEehhHH-hhcCcccchHHHHHHHhhhhhhhhccCCchH----------------------
Confidence 98731 1279999999999 3333333333333332110 01111111111
Q ss_pred EecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCcccccccChhHHHHHHHhhhhhccCCccccccEE
Q 001729 201 AIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSIL 280 (1020)
Q Consensus 201 ~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ll~~i~~~~~~~~g~iL 280 (1020)
+.-+..+.+..+ +.+..+......+- .. .+ .++..+..-. +|+++
T Consensus 317 --------------ldlV~~i~k~TG-------d~vev~~YeRl~pL----~v----~~---~~~~sl~nlk---~GDCv 361 (700)
T KOG0953|consen 317 --------------LDLVRKILKMTG-------DDVEVREYERLSPL----VV----EE---TALGSLSNLK---PGDCV 361 (700)
T ss_pred --------------HHHHHHHHhhcC-------CeeEEEeecccCcc----ee----hh---hhhhhhccCC---CCCeE
Confidence 111111221111 00000000000000 00 00 1111121112 36666
Q ss_pred EEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhc--cc-eEEEEeccccccccccceeEEeeccccee
Q 001729 281 VFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKS--HR-KVILATNIAESSVTIPKVAYVIDSCRSLQ 357 (1020)
Q Consensus 281 VFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~--gr-kVLVATniae~GIdIp~V~~VId~G~~k~ 357 (1020)
| +-++++|-.+...+...+ +..+.+++|+||++.|.+.-..|.+ +. +|+||||..++|+|+ +|+-||..-+.
T Consensus 362 V-~FSkk~I~~~k~kIE~~g-~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~-- 436 (700)
T KOG0953|consen 362 V-AFSKKDIFTVKKKIEKAG-NHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLI-- 436 (700)
T ss_pred E-EeehhhHHHHHHHHHHhc-CcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecc--
Confidence 5 557788888888887533 2458889999999998888888865 45 999999999999999 78888853322
Q ss_pred eeeeccccccceeeEEeehhHHHHhcCCCCccc----CCeeEEeechh
Q 001729 358 VFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC----DGQVYRLVTKS 401 (1020)
Q Consensus 358 ~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~----~G~c~rLys~~ 401 (1020)
+.+.-.+.+|+.+++.|-+|||||.+ .|.+-.|+.++
T Consensus 437 -------Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~eD 477 (700)
T KOG0953|consen 437 -------KYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSED 477 (700)
T ss_pred -------cCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeHhh
Confidence 23344567889999999999999983 58888888765
No 114
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.50 E-value=1.9e-14 Score=151.96 Aligned_cols=151 Identities=23% Similarity=0.264 Sum_probs=104.5
Q ss_pred hhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhc-------CCccccccCCceehhhhHHHHHhhccccccCccc
Q 001729 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE-------NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEV 100 (1020)
Q Consensus 28 i~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~-------~~~~IivtqPrrlaa~sva~rva~e~~~~lg~~V 100 (1020)
++++|.++++.+.+++++++++|||+|||..+...+++. ...+++++.|++.++.+.++.+...... .+..+
T Consensus 22 ~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~-~~~~~ 100 (203)
T cd00268 22 PTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKH-TNLKV 100 (203)
T ss_pred CCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhcc-CCceE
Confidence 688999999999999999999999999997665554432 2236888889999999887766553221 12222
Q ss_pred ceecccc------ccccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhccCCeEEEE
Q 001729 101 GYHIGHS------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVL 174 (1020)
Q Consensus 101 gy~i~~~------~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIl 174 (1020)
+...+.. .....+.+|+|+|++.|++.+......+.++++||+||+|+ ..+.++...+...+.....+.++++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~-~~~~~~~~~~~~~~~~l~~~~~~~~ 179 (203)
T cd00268 101 VVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADR-MLDMGFEDQIREILKLLPKDRQTLL 179 (203)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHH-hhccChHHHHHHHHHhCCcccEEEE
Confidence 2111111 11234789999999999998876665566899999999994 2233333222222223345789999
Q ss_pred eecccc
Q 001729 175 MSATAD 180 (1020)
Q Consensus 175 mSATld 180 (1020)
+|||++
T Consensus 180 ~SAT~~ 185 (203)
T cd00268 180 FSATMP 185 (203)
T ss_pred EeccCC
Confidence 999986
No 115
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.44 E-value=6.6e-13 Score=166.86 Aligned_cols=108 Identities=15% Similarity=0.196 Sum_probs=90.3
Q ss_pred cccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhc---cc-eEEEEeccccccccccceeEEee
Q 001729 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKS---HR-KVILATNIAESSVTIPKVAYVID 351 (1020)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~---gr-kVLVATniae~GIdIp~V~~VId 351 (1020)
+.++|||+.-...+..+.+.|. ..++....+||+++.++|..+++.|.. .+ -+|++|.+++.|||+...++||.
T Consensus 487 g~KVLIFSQft~~LdiLed~L~--~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIi 564 (1033)
T PLN03142 487 DSRVLIFSQMTRLLDILEDYLM--YRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVIL 564 (1033)
T ss_pred CCeEEeehhHHHHHHHHHHHHH--HcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEE
Confidence 4699999998888888888876 345778899999999999999999964 23 57899999999999999999998
Q ss_pred cccceeeeeeccccccceeeEEeehhHHHHhcCCCCccc---CCeeEEeechhhc
Q 001729 352 SCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC---DGQVYRLVTKSFF 403 (1020)
Q Consensus 352 ~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~---~G~c~rLys~~~~ 403 (1020)
||++-+.... .|+.||+-|.+ +=.+|+|+++...
T Consensus 565 --------yD~dWNP~~d----------~QAidRaHRIGQkk~V~VyRLIt~gTI 601 (1033)
T PLN03142 565 --------YDSDWNPQVD----------LQAQDRAHRIGQKKEVQVFRFCTEYTI 601 (1033)
T ss_pred --------eCCCCChHHH----------HHHHHHhhhcCCCceEEEEEEEeCCcH
Confidence 9988755544 89999998884 4568999987654
No 116
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.44 E-value=5e-13 Score=162.73 Aligned_cols=80 Identities=18% Similarity=0.136 Sum_probs=66.3
Q ss_pred HHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccceEEEEeccc
Q 001729 258 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATNIA 337 (1020)
Q Consensus 258 ~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~grkVLVATnia 337 (1020)
...+.+-+..++.. +.++|||+.+.+..+.++..|.. .++....+|+.....++..+.+.|+.|. |+||||+|
T Consensus 435 ~~Aii~ei~~~~~~----GrpVLV~t~sv~~se~ls~~L~~--~gi~~~vLnak~~~~Ea~ii~~Ag~~G~-VtIATnmA 507 (908)
T PRK13107 435 YQAIIKDIKDCRER----GQPVLVGTVSIEQSELLARLMVK--EKIPHEVLNAKFHEREAEIVAQAGRTGA-VTIATNMA 507 (908)
T ss_pred HHHHHHHHHHHHHc----CCCEEEEeCcHHHHHHHHHHHHH--CCCCeEeccCcccHHHHHHHHhCCCCCc-EEEecCCc
Confidence 34444445555543 46999999999999999999984 4578889999999999999999998776 99999999
Q ss_pred ccccccc
Q 001729 338 ESSVTIP 344 (1020)
Q Consensus 338 e~GIdIp 344 (1020)
++|+||.
T Consensus 508 GRGTDIk 514 (908)
T PRK13107 508 GRGTDIV 514 (908)
T ss_pred CCCccee
Confidence 9999985
No 117
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.40 E-value=2.4e-12 Score=157.03 Aligned_cols=122 Identities=18% Similarity=0.217 Sum_probs=88.0
Q ss_pred cc--hhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcCC--ccccccCCceehhhhHHHHHhhccccccCcccc
Q 001729 26 LP--VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM--EPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (1020)
Q Consensus 26 LP--i~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~~--~~IivtqPrrlaa~sva~rva~e~~~~lg~~Vg 101 (1020)
-| ++++|.+++..+..++++|..++||+|||+++..+++.... ..+.++.|++.+|.+.++.+.... ..+|..||
T Consensus 89 ~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~~v~IVTpTrELA~Qdae~m~~L~-k~lGLsV~ 167 (970)
T PRK12899 89 QQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGKPVHLVTVNDYLAQRDCEWVGSVL-RWLGLTTG 167 (970)
T ss_pred CCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHHHHHHHHH-hhcCCeEE
Confidence 46 89999999999999999999999999999888777765432 235566778888888887665432 23344444
Q ss_pred eeccccc----cccccceEEeeechhh-hHHHHHhccccc-------eeEEEEeecccc
Q 001729 102 YHIGHSK----HLSERSKIVFKTAGVL-LDEMRDRGLNAL-------KYKVIILDEVHE 148 (1020)
Q Consensus 102 y~i~~~~----~~~~~t~Iiv~Tpg~L-l~~l~~~~l~l~-------~~s~IIIDEaHE 148 (1020)
..++..+ ...-.++|+|+|||.| ++.+.++.+.+. .+.++||||||.
T Consensus 168 ~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADs 226 (970)
T PRK12899 168 VLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDS 226 (970)
T ss_pred EEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhh
Confidence 4333221 1112589999999999 888876644333 458999999995
No 118
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.36 E-value=7.5e-12 Score=150.71 Aligned_cols=274 Identities=18% Similarity=0.218 Sum_probs=172.1
Q ss_pred cchhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhh---hhhcCCccccccCCceehhhhHHHHHhhcccc--ccCccc
Q 001729 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQF---LLAENMEPILCTQPRRFAVVAVAKMVAKGRNC--ELGGEV 100 (1020)
Q Consensus 26 LPi~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~---lle~~~~~IivtqPrrlaa~sva~rva~e~~~--~lg~~V 100 (1020)
.++|..|.--...+..|+..-|+||||.||||....+ +...+ ++++++.||+.++.|+++++...... .....+
T Consensus 81 ~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~kg-kr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~ 159 (1187)
T COG1110 81 FRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKKG-KRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLV 159 (1187)
T ss_pred CCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhcC-CeEEEEecCHHHHHHHHHHHHHHHhhcCCcceee
Confidence 4788999999999999999999999999999754433 33333 67888899999999999998763311 112222
Q ss_pred ceeccc---------cccccccceEEeeechhhhHHHHHhccccceeEEEEeecccc---cccccceeehhh--------
Q 001729 101 GYHIGH---------SKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHE---RSVESDLVLVCV-------- 160 (1020)
Q Consensus 101 gy~i~~---------~~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHE---R~l~~d~ll~~l-------- 160 (1020)
.|+-.. ++..+.+.+|+++|.+.|.+.+..- .-.++++|++|++|- .+-+.|-++.++
T Consensus 160 ~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L--~~~kFdfifVDDVDA~LkaskNvDriL~LlGf~eE~i~ 237 (1187)
T COG1110 160 VYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEEL--SKLKFDFIFVDDVDAILKASKNVDRLLRLLGFSEEVIE 237 (1187)
T ss_pred eeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHh--cccCCCEEEEccHHHHHhccccHHHHHHHcCCCHHHHH
Confidence 233211 1122457899999999998776532 113799999999993 222333222211
Q ss_pred --------hhH----------------------hhccCCeEEEEeecccchhh-hhHHHhhcCCcceEEEEEecCCCchh
Q 001729 161 --------KQL----------------------LLKKNDLRVVLMSATADITK-YRDYFRDLGRGERVEVLAIPSTNQRT 209 (1020)
Q Consensus 161 --------k~l----------------------l~~~~~lkiIlmSATld~~~-~~~~f~~~~~~~~v~v~~~p~~~~~~ 209 (1020)
+.- ..+...-.+|++|||..+.. -...|..+-. .++ +..
T Consensus 238 ~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlg---Fev----G~~--- 307 (1187)
T COG1110 238 SAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLG---FEV----GSG--- 307 (1187)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhC---Ccc----Ccc---
Confidence 000 01224468999999974332 2222222100 000 000
Q ss_pred hHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCcccccccChhHHHHHHHhhhhhccCCccccccEEEEecc---h
Q 001729 210 IFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPT---Y 286 (1020)
Q Consensus 210 ~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~---~ 286 (1020)
..++..+. +........+.+.+++..+ +...|||+|. +
T Consensus 308 -----~~~LRNIv---------------------------D~y~~~~~~e~~~elvk~l-------G~GgLIfV~~d~G~ 348 (1187)
T COG1110 308 -----GEGLRNIV---------------------------DIYVESESLEKVVELVKKL-------GDGGLIFVPIDYGR 348 (1187)
T ss_pred -----chhhhhee---------------------------eeeccCccHHHHHHHHHHh-------CCCeEEEEEcHHhH
Confidence 01111111 1111111222223333322 2357999999 8
Q ss_pred hhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc-eEEEEe----cccccccccc-ceeEEeecccceee
Q 001729 287 YALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILAT----NIAESSVTIP-KVAYVIDSCRSLQV 358 (1020)
Q Consensus 287 ~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVLVAT----niae~GIdIp-~V~~VId~G~~k~~ 358 (1020)
+.++.+++.|+ ..++.+..+|+. ....++.|..|. +|+|.+ +++-+|||+| -++|+|..|..|.+
T Consensus 349 e~aeel~e~Lr--~~Gi~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk~r 419 (1187)
T COG1110 349 EKAEELAEYLR--SHGINAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPKFR 419 (1187)
T ss_pred HHHHHHHHHHH--hcCceEEEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCcee
Confidence 89999999998 456888888874 255678999998 999976 6899999999 78999998887544
No 119
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.35 E-value=1.2e-11 Score=138.06 Aligned_cols=317 Identities=17% Similarity=0.206 Sum_probs=179.1
Q ss_pred cchhhhHHHHHHHHhhc---cEEEEecCCCCCCcCChhhhhhhcCCccccccCCceehhhhHHHHHhhccccccCcccce
Q 001729 26 LPVMSLREKIVEKVLEN---RVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (1020)
Q Consensus 26 LPi~~~Q~eil~~i~~~---~~vII~apTGSGKTt~ip~~lle~~~~~IivtqPrrlaa~sva~rva~e~~~~lg~~Vgy 102 (1020)
--+++||++.+..+..| +.-||+.|-|+|||..-.-.+ -...+.++|+....+.+.|....+.......-.. ++-
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa-~tikK~clvLcts~VSVeQWkqQfk~wsti~d~~-i~r 378 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAA-CTIKKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQ-ICR 378 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeee-eeecccEEEEecCccCHHHHHHHHHhhcccCccc-eEE
Confidence 34789999999999765 567999999999994322111 1122456677776677777666554433322222 221
Q ss_pred eccc-cccccccceEEeeechhhhHH----HHH----hccccceeEEEEeecccccccccceeehhhhhHhhccCCeEEE
Q 001729 103 HIGH-SKHLSERSKIVFKTAGVLLDE----MRD----RGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVV 173 (1020)
Q Consensus 103 ~i~~-~~~~~~~t~Iiv~Tpg~Ll~~----l~~----~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiI 173 (1020)
.... .+....++.|+|+|..|+..- ... +.+.-..++++|+||+|- +-..+.++++..-..---+
T Consensus 379 FTsd~Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHv------vPA~MFRRVlsiv~aHcKL 452 (776)
T KOG1123|consen 379 FTSDAKERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHV------VPAKMFRRVLSIVQAHCKL 452 (776)
T ss_pred eeccccccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhcc------chHHHHHHHHHHHHHHhhc
Confidence 1122 222455788999999887521 110 112223899999999992 2233445554332222237
Q ss_pred Eeeccc--chhhhhH-------------HHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCcccccccccc
Q 001729 174 LMSATA--DITKYRD-------------YFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSL 238 (1020)
Q Consensus 174 lmSATl--d~~~~~~-------------~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~ 238 (1020)
+++||+ ..+++.+ |.+-...+.-..|-....- -...-..--.||.+...
T Consensus 453 GLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVW-CpMt~eFy~eYL~~~t~--------------- 516 (776)
T KOG1123|consen 453 GLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVW-CPMTPEFYREYLRENTR--------------- 516 (776)
T ss_pred cceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeee-cCCCHHHHHHHHhhhhh---------------
Confidence 899997 2223222 2221112221111110000 00000111122221100
Q ss_pred ccCCCCCCcccccccChhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHH
Q 001729 239 RYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQAL 318 (1020)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~ 318 (1020)
..+.-..+.+..+.... .+-..|+.. +.+||||....-.....+-.|.+ -.++|..++.+|.
T Consensus 517 -------kr~lLyvMNP~KFraCq-fLI~~HE~R---gDKiIVFsDnvfALk~YAikl~K-------pfIYG~Tsq~ERm 578 (776)
T KOG1123|consen 517 -------KRMLLYVMNPNKFRACQ-FLIKFHERR---GDKIIVFSDNVFALKEYAIKLGK-------PFIYGPTSQNERM 578 (776)
T ss_pred -------hhheeeecCcchhHHHH-HHHHHHHhc---CCeEEEEeccHHHHHHHHHHcCC-------ceEECCCchhHHH
Confidence 00011112223333333 333444443 46999999988877777666652 3578999999999
Q ss_pred HHHHhhhccc--eEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcccC-----
Q 001729 319 MAMKICKSHR--KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD----- 391 (1020)
Q Consensus 319 ~i~~~f~~gr--kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~----- 391 (1020)
+|++.|+-.. +-|+-.-++.++||+|..+++|. .....+ |+.+-.||.||.-|...
T Consensus 579 ~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQ--------ISSH~G---------SRRQEAQRLGRILRAKk~~de~ 641 (776)
T KOG1123|consen 579 KILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQ--------ISSHGG---------SRRQEAQRLGRILRAKKRNDEE 641 (776)
T ss_pred HHHHhcccCCccceEEEeeccCccccCCcccEEEE--------Eccccc---------chHHHHHHHHHHHHHhhcCccc
Confidence 9999997554 77888899999999999999997 222221 56667899999888742
Q ss_pred --CeeEEeechh
Q 001729 392 --GQVYRLVTKS 401 (1020)
Q Consensus 392 --G~c~rLys~~ 401 (1020)
...|.|++++
T Consensus 642 fnafFYSLVS~D 653 (776)
T KOG1123|consen 642 FNAFFYSLVSKD 653 (776)
T ss_pred cceeeeeeeecc
Confidence 2345566553
No 120
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.32 E-value=2.1e-12 Score=125.92 Aligned_cols=134 Identities=33% Similarity=0.379 Sum_probs=92.7
Q ss_pred cEEEEecCCCCCCcCChhhhhhhcC----CccccccCCceehhhhHHHHHhhccccccCcccceeccccccc------cc
Q 001729 43 RVTLIVGETGCGKSSQVPQFLLAEN----MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHL------SE 112 (1020)
Q Consensus 43 ~~vII~apTGSGKTt~ip~~lle~~----~~~IivtqPrrlaa~sva~rva~e~~~~lg~~Vgy~i~~~~~~------~~ 112 (1020)
++++|.|+||+|||+++..++.+.. .++++++.|++.++.+..+++...... +..+.+........ ..
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 78 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKLLSG 78 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHHhcC
Confidence 4689999999999988887776653 368999999999999988887775542 23334333332222 45
Q ss_pred cceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhccCCeEEEEeeccc
Q 001729 113 RSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATA 179 (1020)
Q Consensus 113 ~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmSATl 179 (1020)
...|+++|++.+.+.+.........+++|||||+|. .....................+++++|||+
T Consensus 79 ~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~-~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 79 KTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHR-LLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHH-HhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 789999999999888765433344789999999993 222222211122333445678999999995
No 121
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.31 E-value=3.6e-12 Score=132.05 Aligned_cols=155 Identities=25% Similarity=0.233 Sum_probs=105.7
Q ss_pred CcchhhhHHHHHHHHhhc-cEEEEecCCCCCCcCChhhhhhhcCC----ccccccCCceehhhhHHHHHhhccccccCcc
Q 001729 25 SLPVMSLREKIVEKVLEN-RVTLIVGETGCGKSSQVPQFLLAENM----EPILCTQPRRFAVVAVAKMVAKGRNCELGGE 99 (1020)
Q Consensus 25 ~LPi~~~Q~eil~~i~~~-~~vII~apTGSGKTt~ip~~lle~~~----~~IivtqPrrlaa~sva~rva~e~~~~lg~~ 99 (1020)
..+++++|.++++.+... +++++.|+||+|||+.+..++++... .+++++.|++.++.+..+++........+..
T Consensus 6 ~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~ 85 (201)
T smart00487 6 FEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKV 85 (201)
T ss_pred CCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEE
Confidence 355789999999999988 99999999999999977777766543 4689999999888888887776543211111
Q ss_pred cceecccc-----c-cccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhccCCeEEE
Q 001729 100 VGYHIGHS-----K-HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVV 173 (1020)
Q Consensus 100 Vgy~i~~~-----~-~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiI 173 (1020)
.....+.. . ......+|+++|++.+.+.+.........+++|||||+|..... .....+...+....+..+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~-~~~~~~~~~~~~~~~~~~~v 164 (201)
T smart00487 86 VGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDG-GFGDQLEKLLKLLPKNVQLL 164 (201)
T ss_pred EEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcC-CcHHHHHHHHHhCCccceEE
Confidence 11110111 1 11223399999999999988765444558999999999953321 22222222222224678999
Q ss_pred Eeecccc
Q 001729 174 LMSATAD 180 (1020)
Q Consensus 174 lmSATld 180 (1020)
+||||+.
T Consensus 165 ~~saT~~ 171 (201)
T smart00487 165 LLSATPP 171 (201)
T ss_pred EEecCCc
Confidence 9999983
No 122
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.26 E-value=3.7e-11 Score=152.74 Aligned_cols=130 Identities=16% Similarity=0.178 Sum_probs=81.3
Q ss_pred HHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhcccc--ccceEEEEeecccchHHHHHHHHhhhccc-eEEEEe
Q 001729 258 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL--SSFFKVHILHSSVDTEQALMAMKICKSHR-KVILAT 334 (1020)
Q Consensus 258 ~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~--~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVLVAT 334 (1020)
.+.+.+.+..+.... +|++|||+++.+.++.++..|... ..++.+ +..+.. ..|..+++.|+.+. .||++|
T Consensus 659 ~~~ia~~i~~l~~~~---~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~--l~q~~~-~~r~~ll~~F~~~~~~iLlgt 732 (850)
T TIGR01407 659 AQEIASYIIEITAIT---SPKILVLFTSYEMLHMVYDMLNELPEFEGYEV--LAQGIN-GSRAKIKKRFNNGEKAILLGT 732 (850)
T ss_pred HHHHHHHHHHHHHhc---CCCEEEEeCCHHHHHHHHHHHhhhccccCceE--EecCCC-ccHHHHHHHHHhCCCeEEEEc
Confidence 334444444444332 378999999999999999988642 122333 333333 46778889998877 999999
Q ss_pred cccccccccccee--EEeecccceeeeeecccc--------------ccceeeE--EeehhHHHHhcCCCCccc--CCee
Q 001729 335 NIAESSVTIPKVA--YVIDSCRSLQVFWDVNRK--------------IDSAELV--WVSQSQAEQRRGRTGRTC--DGQV 394 (1020)
Q Consensus 335 niae~GIdIp~V~--~VId~G~~k~~~yd~~~~--------------~~~l~~~--~iSkas~~QR~GRAGR~~--~G~c 394 (1020)
+.+.+|||+|+.. .||-.|+. |.+|.. -+.+... |-.--.+.|-+||.=|.. .|.+
T Consensus 733 ~sf~EGVD~~g~~l~~viI~~LP----f~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v 808 (850)
T TIGR01407 733 SSFWEGVDFPGNGLVCLVIPRLP----FANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSI 808 (850)
T ss_pred ceeecccccCCCceEEEEEeCCC----CCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEE
Confidence 9999999999765 55555654 222211 0111000 112244689999999984 4655
Q ss_pred EEe
Q 001729 395 YRL 397 (1020)
Q Consensus 395 ~rL 397 (1020)
+.|
T Consensus 809 ~il 811 (850)
T TIGR01407 809 VIL 811 (850)
T ss_pred EEE
Confidence 544
No 123
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.24 E-value=3.2e-13 Score=126.65 Aligned_cols=70 Identities=24% Similarity=0.391 Sum_probs=54.5
Q ss_pred hHHHHHHHHhhhhhcCCCCccCccccchhccccccccceeEEEEEeccchhhhhhhhhhhhccCCCccccCCCCcc
Q 001729 455 DALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPFGDD 530 (1020)
Q Consensus 455 ~al~~L~~lgald~~~~~g~~~lT~lG~~~a~lpldp~~a~~ll~~~~~gc~~e~l~Iaa~ls~~~~~~~~P~~~~ 530 (1020)
.|++.|+.+||||.+ | ++|++|+.|++||++|++|+||+.+..+||+.++++|||+|++ ..+|..|.+++
T Consensus 1 ~A~~~L~~Lgald~~---~--~lT~lG~~~~~lPl~p~~a~~Ll~~~~~~~~~~~~~iaa~ls~-~~~f~~~~~~~ 70 (102)
T PF04408_consen 1 KALELLKSLGALDEN---G--NLTPLGRKMSQLPLDPRLAKMLLYGIQFGCLDEALIIAAILSV-RSPFINPDDKE 70 (102)
T ss_dssp -HHHHHHHTTSB-TT---S---B-HHHHHHTTSSS-HHHHHHHHHHHHCT-HHHHHHHHHHHTS-S--B---CCGH
T ss_pred CHHHHHHHCCCCCCC---C--CcCHHHHHHHHCCCchHhHhHhhhccccccHHHHHHHHHHHcC-CCcccCccHHH
Confidence 478999999999874 5 6999999999999999999999999999999999999999998 55888876554
No 124
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.24 E-value=3.5e-10 Score=139.31 Aligned_cols=251 Identities=18% Similarity=0.138 Sum_probs=129.6
Q ss_pred ceEEeeechhhhHHHHH--h---ccc--cceeEEEEeecccccccccceeehhhhhHhh--ccCCeEEEEeecccchhhh
Q 001729 114 SKIVFKTAGVLLDEMRD--R---GLN--ALKYKVIILDEVHERSVESDLVLVCVKQLLL--KKNDLRVVLMSATADITKY 184 (1020)
Q Consensus 114 t~Iiv~Tpg~Ll~~l~~--~---~l~--l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~--~~~~lkiIlmSATld~~~~ 184 (1020)
..|+|||+..++..... . .+. -+.-++|||||+|- .+ ...+.++.+++. ..-..+||+||||+++...
T Consensus 563 apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHa--YD-~~~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~ 639 (1110)
T TIGR02562 563 APVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDD--YE-PEDLPALLRLVQLAGLLGSRVLLSSATLPPALV 639 (1110)
T ss_pred CCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCcc--CC-HHHHHHHHHHHHHHHHcCCCEEEEeCCCCHHHH
Confidence 57999999888866521 1 111 12578999999993 22 223344444444 3446789999999987655
Q ss_pred hHHHhhc-----------CCc-ce--EEEEEecCCCc-------hhhH-HHhhhHHHHHHHHhcCCccccccccccccCC
Q 001729 185 RDYFRDL-----------GRG-ER--VEVLAIPSTNQ-------RTIF-QRRVSYLEQVTELLGVDHGMTSELSSLRYCS 242 (1020)
Q Consensus 185 ~~~f~~~-----------~~~-~~--v~v~~~p~~~~-------~~~~-~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~ 242 (1020)
..++... +.+ .+ +....+..... ...| .....|+......+... ..........
T Consensus 640 ~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~----p~~R~a~i~~ 715 (1110)
T TIGR02562 640 KTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKK----PVRRLAELLS 715 (1110)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcC----cccceEEEee
Confidence 5444332 211 12 22222222110 0011 11123444444333210 0000000001
Q ss_pred CCCCcccccccChhHHHHHHHhhhhhccC----CccccccE---EEEecchhhHHHhhhhccc----cccceEEEEeecc
Q 001729 243 GPSPSMANAEIKPEVHKLIHDLVLHIHKN----ESDIEKSI---LVFLPTYYALEQQWHLMKP----LSSFFKVHILHSS 311 (1020)
Q Consensus 243 ~~~~~~~~~~~~~~~~~li~~ll~~i~~~----~~~~~g~i---LVFl~~~~~ie~l~~~L~~----~~~~~~v~~lHs~ 311 (1020)
.+............+.+.+.+.+..+|.. .+..+++| ||=+++.+.+-.++..|.. ....+.+..+||.
T Consensus 716 ~~~~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr 795 (1110)
T TIGR02562 716 LSSLPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQ 795 (1110)
T ss_pred cCCcccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEeccc
Confidence 11111111122233445555555555432 12112222 6667777776666666543 2334667889999
Q ss_pred cchHHHHHHHHhh----------------------hc----cc-eEEEEeccccccccccceeEEeecccceeeeeeccc
Q 001729 312 VDTEQALMAMKIC----------------------KS----HR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNR 364 (1020)
Q Consensus 312 l~~~er~~i~~~f----------------------~~----gr-kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~ 364 (1020)
.+...|..+++.. +. +. .|||||.+.|.|+|++ .+++|- .+.
T Consensus 796 ~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~d-fd~~~~----------~~~ 864 (1110)
T TIGR02562 796 DPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDHD-YDWAIA----------DPS 864 (1110)
T ss_pred ChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEeccc-CCeeee----------ccC
Confidence 8776665554321 11 23 8999999999999994 555541 133
Q ss_pred cccceeeEEeehhHHHHhcCCCCcccCC
Q 001729 365 KIDSAELVWVSQSQAEQRRGRTGRTCDG 392 (1020)
Q Consensus 365 ~~~~l~~~~iSkas~~QR~GRAGR~~~G 392 (1020)
.++++ +||+||+.|.+.+
T Consensus 865 ~~~sl----------iQ~aGR~~R~~~~ 882 (1110)
T TIGR02562 865 SMRSI----------IQLAGRVNRHRLE 882 (1110)
T ss_pred cHHHH----------HHHhhcccccccC
Confidence 44444 9999999998543
No 125
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.23 E-value=2.2e-11 Score=118.48 Aligned_cols=101 Identities=28% Similarity=0.414 Sum_probs=88.6
Q ss_pred cccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc-eEEEEeccccccccccceeEEeeccc
Q 001729 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCR 354 (1020)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVLVATniae~GIdIp~V~~VId~G~ 354 (1020)
.+++|||+++...++.+++.|.. .+..+..+||+++..+|..+++.|+.+. +||++|+++++|+|+|++++||.
T Consensus 28 ~~~~lvf~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi~--- 102 (131)
T cd00079 28 GGKVLIFCPSKKMLDELAELLRK--PGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVIN--- 102 (131)
T ss_pred CCcEEEEeCcHHHHHHHHHHHHh--cCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhCCEEEE---
Confidence 46999999999999999999974 4577899999999999999999999888 99999999999999999999997
Q ss_pred ceeeeeeccccccceeeEEeehhHHHHhcCCCCccc-CCeeEE
Q 001729 355 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC-DGQVYR 396 (1020)
Q Consensus 355 ~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~-~G~c~r 396 (1020)
++++. +...+.|++||+||.+ .|.|+.
T Consensus 103 -----~~~~~----------~~~~~~Q~~GR~~R~~~~~~~~~ 130 (131)
T cd00079 103 -----YDLPW----------SPSSYLQRIGRAGRAGQKGTAIL 130 (131)
T ss_pred -----eCCCC----------CHHHheecccccccCCCCceEEe
Confidence 56544 5566699999999995 787765
No 126
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.23 E-value=1.3e-11 Score=127.30 Aligned_cols=148 Identities=14% Similarity=0.181 Sum_probs=94.2
Q ss_pred cchhhhHHHHHHHHhh-------ccEEEEecCCCCCCcCChhhhhhhcCCccccccCCceehhhhHHHHHhhccccccC-
Q 001729 26 LPVMSLREKIVEKVLE-------NRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELG- 97 (1020)
Q Consensus 26 LPi~~~Q~eil~~i~~-------~~~vII~apTGSGKTt~ip~~lle~~~~~IivtqPrrlaa~sva~rva~e~~~~lg- 97 (1020)
..++++|.+++..+.+ ++.+++.+|||||||..+..++.+... +++++.|+..++.|....+.........
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~-~~l~~~p~~~l~~Q~~~~~~~~~~~~~~~ 80 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR-KVLIVAPNISLLEQWYDEFDDFGSEKYNF 80 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC-EEEEEESSHHHHHHHHHHHHHHSTTSEEE
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc-ceeEecCHHHHHHHHHHHHHHhhhhhhhh
Confidence 5688999999999984 689999999999999777665555444 7888889988888888777321111000
Q ss_pred -----------c----ccceeccccccccccceEEeeechhhhHHHHHh-----------ccccceeEEEEeeccccccc
Q 001729 98 -----------G----EVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDR-----------GLNALKYKVIILDEVHERSV 151 (1020)
Q Consensus 98 -----------~----~Vgy~i~~~~~~~~~t~Iiv~Tpg~Ll~~l~~~-----------~l~l~~~s~IIIDEaHER~l 151 (1020)
. ................++.+.|.+.|....... ......+++||+||||+ ..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~-~~ 159 (184)
T PF04851_consen 81 FEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHH-YP 159 (184)
T ss_dssp EE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGC-TH
T ss_pred cccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhh-cC
Confidence 0 000000011122446789999999998775431 11223789999999994 32
Q ss_pred ccceeehhhhhHhhccCCeEEEEeecccc
Q 001729 152 ESDLVLVCVKQLLLKKNDLRVVLMSATAD 180 (1020)
Q Consensus 152 ~~d~ll~~lk~ll~~~~~lkiIlmSATld 180 (1020)
...- .+.+.. .+...+|+||||+.
T Consensus 160 ~~~~----~~~i~~-~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 160 SDSS----YREIIE-FKAAFILGLTATPF 183 (184)
T ss_dssp HHHH----HHHHHH-SSCCEEEEEESS-S
T ss_pred CHHH----HHHHHc-CCCCeEEEEEeCcc
Confidence 2221 333333 56778999999964
No 127
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.19 E-value=5.2e-11 Score=145.58 Aligned_cols=110 Identities=24% Similarity=0.289 Sum_probs=94.3
Q ss_pred cccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc-eEEEEeccccccccccceeEEeeccc
Q 001729 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCR 354 (1020)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVLVATniae~GIdIp~V~~VId~G~ 354 (1020)
+.++|||+++++.++.+++.|.. .++.+..+||+++..+|..+++.|+.|. .|+|||+++++|+|+|++++||.
T Consensus 442 g~~vLIf~~tk~~ae~L~~~L~~--~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi--- 516 (655)
T TIGR00631 442 NERVLVTTLTKKMAEDLTDYLKE--LGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAI--- 516 (655)
T ss_pred CCEEEEEECCHHHHHHHHHHHhh--hccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEEE---
Confidence 36899999999999999999984 3578899999999999999999999998 99999999999999999999997
Q ss_pred ceeeeeeccccccceeeEEeehhHHHHhcCCCCcccCCeeEEeech
Q 001729 355 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTK 400 (1020)
Q Consensus 355 ~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~c~rLys~ 400 (1020)
+|...- ..+-|..+|+||+|||||..+|+++.+++.
T Consensus 517 -----~Dadif-----G~p~~~~~~iqriGRagR~~~G~vi~~~~~ 552 (655)
T TIGR00631 517 -----LDADKE-----GFLRSERSLIQTIGRAARNVNGKVIMYADK 552 (655)
T ss_pred -----eCcccc-----cCCCCHHHHHHHhcCCCCCCCCEEEEEEcC
Confidence 552110 012255678999999999999999988775
No 128
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.19 E-value=1.4e-11 Score=109.36 Aligned_cols=72 Identities=29% Similarity=0.404 Sum_probs=65.1
Q ss_pred cceEEEEeecccchHHHHHHHHhhhccc-eEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHH
Q 001729 301 SFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQA 379 (1020)
Q Consensus 301 ~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~ 379 (1020)
.++.+..+||+++.++|..+++.|+.+. +|||||+++++|||+|++++||. |+++. |...+
T Consensus 6 ~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~--------~~~~~----------~~~~~ 67 (78)
T PF00271_consen 6 KGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIF--------YDPPW----------SPEEY 67 (78)
T ss_dssp TTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEE--------SSSES----------SHHHH
T ss_pred CCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccc--------cccCC----------CHHHH
Confidence 4578999999999999999999999988 99999999999999999999998 77755 56667
Q ss_pred HHhcCCCCccc
Q 001729 380 EQRRGRTGRTC 390 (1020)
Q Consensus 380 ~QR~GRAGR~~ 390 (1020)
.||+||+||.+
T Consensus 68 ~Q~~GR~~R~g 78 (78)
T PF00271_consen 68 IQRIGRAGRIG 78 (78)
T ss_dssp HHHHTTSSTTT
T ss_pred HHHhhcCCCCC
Confidence 99999999963
No 129
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.14 E-value=8.1e-11 Score=144.82 Aligned_cols=110 Identities=25% Similarity=0.288 Sum_probs=94.9
Q ss_pred cccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc-eEEEEeccccccccccceeEEeeccc
Q 001729 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCR 354 (1020)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVLVATniae~GIdIp~V~~VId~G~ 354 (1020)
+.++|||+++++.++.+++.|.. .++.+..+||+++..+|..+++.|+.|. .|+|||+++++|+|+|++++||.
T Consensus 446 g~~viIf~~t~~~ae~L~~~L~~--~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii--- 520 (652)
T PRK05298 446 GERVLVTTLTKRMAEDLTDYLKE--LGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAI--- 520 (652)
T ss_pred CCEEEEEeCCHHHHHHHHHHHhh--cceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEEE---
Confidence 36899999999999999999984 4588999999999999999999999988 99999999999999999999997
Q ss_pred ceeeeeeccccccceeeEEeehhHHHHhcCCCCcccCCeeEEeech
Q 001729 355 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTK 400 (1020)
Q Consensus 355 ~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~c~rLys~ 400 (1020)
+|...- ..|-+..+|+||+||+||...|+|+.+++.
T Consensus 521 -----~d~eif-----G~~~~~~~yiqr~GR~gR~~~G~~i~~~~~ 556 (652)
T PRK05298 521 -----LDADKE-----GFLRSERSLIQTIGRAARNVNGKVILYADK 556 (652)
T ss_pred -----eCCccc-----ccCCCHHHHHHHhccccCCCCCEEEEEecC
Confidence 553210 012356678999999999999999998874
No 130
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=99.12 E-value=4.4e-12 Score=116.61 Aligned_cols=85 Identities=25% Similarity=0.332 Sum_probs=68.3
Q ss_pred hHHHHHHHHhhhhhcCCCCccCccccchhccccccccceeEEEEEeccc-hhhhhhhhhhhhccCCCccccCCCCccchh
Q 001729 455 DALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGEI-GMLREGILLGILMDTQPLPILHPFGDDALF 533 (1020)
Q Consensus 455 ~al~~L~~lgald~~~~~g~~~lT~lG~~~a~lpldp~~a~~ll~~~~~-gc~~e~l~Iaa~ls~~~~~~~~P~~~~~~a 533 (1020)
.|++.|..+||||.+ | ++|++|+.|++||++|++|+||+.+..+ +|..+++.|+|++++.+ +|..| ......
T Consensus 1 ~A~~~L~~LgAld~~---~--~lT~lG~~m~~lPl~Prla~~Ll~a~~~~~c~~~~~~i~a~ls~~~-~~~~~-~~~~~~ 73 (92)
T smart00847 1 AALELLYELGALDDD---G--RLTPLGRKMAELPLDPRLAKMLLAAAELFGCLDEILTIAAMLSVGD-PFPRP-EKRAEA 73 (92)
T ss_pred CHHHHHHHCCCcCCC---C--CcCHHHHHHHHCCCChHHHHHHHHHHhhcCcHHHHHHHHHHhcCCC-CcCCc-hHHHHH
Confidence 478999999999873 5 6999999999999999999999999999 89999999999999775 66666 333334
Q ss_pred hhcccceecC-CCC
Q 001729 534 AEYTGCYFGG-DGN 546 (1020)
Q Consensus 534 ~~~~~~~~~~-~~d 546 (1020)
...+..|.+. .||
T Consensus 74 ~~~~~~~~~~~~~D 87 (92)
T smart00847 74 DAARRRFASGRESD 87 (92)
T ss_pred HHHHHHccCCCCCC
Confidence 4445555554 455
No 131
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.12 E-value=2e-10 Score=140.82 Aligned_cols=119 Identities=19% Similarity=0.192 Sum_probs=92.2
Q ss_pred HHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc-eEEEEecc
Q 001729 258 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNI 336 (1020)
Q Consensus 258 ~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVLVATni 336 (1020)
.+.+.+.+...+.. +.++|||+++++.++.+++.|.. .++....||+ .+.+|...+..|+++. .|+||||+
T Consensus 584 ~~Ali~~I~~~~~~----grpVLIft~Sve~sE~Ls~~L~~--~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNM 655 (1025)
T PRK12900 584 YNAIVLKVEELQKK----GQPVLVGTASVEVSETLSRMLRA--KRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNM 655 (1025)
T ss_pred HHHHHHHHHHHhhC----CCCEEEEeCcHHHHHHHHHHHHH--cCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccC
Confidence 33444444444432 36999999999999999999984 4577788997 5778888889999988 99999999
Q ss_pred cccccccc---ceeEE-----eecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc-cCCeeEEeechhh
Q 001729 337 AESSVTIP---KVAYV-----IDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSF 402 (1020)
Q Consensus 337 ae~GIdIp---~V~~V-----Id~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c~rLys~~~ 402 (1020)
|++|+||+ +|..| |. ++.+. |+..+.||+|||||. .||.+..+++.++
T Consensus 656 AGRGtDIkl~~~V~~vGGL~VIg--------terhe----------s~Rid~Ql~GRtGRqGdpGsS~ffvSleD 712 (1025)
T PRK12900 656 AGRGTDIKLGEGVRELGGLFILG--------SERHE----------SRRIDRQLRGRAGRQGDPGESVFYVSLED 712 (1025)
T ss_pred cCCCCCcCCccchhhhCCceeeC--------CCCCc----------hHHHHHHHhhhhhcCCCCcceEEEechhH
Confidence 99999999 55433 44 33333 555669999999999 6899999998754
No 132
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.09 E-value=3.9e-10 Score=127.53 Aligned_cols=316 Identities=11% Similarity=0.011 Sum_probs=172.2
Q ss_pred hhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhh----hhcCCccccccCCceehhhhHHHHHh------hcccccc-
Q 001729 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFL----LAENMEPILCTQPRRFAVVAVAKMVA------KGRNCEL- 96 (1020)
Q Consensus 28 i~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~l----le~~~~~IivtqPrrlaa~sva~rva------~e~~~~l- 96 (1020)
-+.+|.+++..+.+++++++.-.|.+||++...... +...-..-++.-|+...++.-.+-.. .++...+
T Consensus 287 ~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~~K~A~V 366 (1034)
T KOG4150|consen 287 GIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSKGQVVHVEVIKARKSAYV 366 (1034)
T ss_pred hhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhccCCceEEEEEehhhhhccee
Confidence 456899999999999999999999999996432221 11111122222232222211100000 0000000
Q ss_pred Ccccceecccccc-ccccceEEeeechhhhHHHHHhcc----ccceeEEEEeeccccccccccee-ehhhhhHhh-----
Q 001729 97 GGEVGYHIGHSKH-LSERSKIVFKTAGVLLDEMRDRGL----NALKYKVIILDEVHERSVESDLV-LVCVKQLLL----- 165 (1020)
Q Consensus 97 g~~Vgy~i~~~~~-~~~~t~Iiv~Tpg~Ll~~l~~~~l----~l~~~s~IIIDEaHER~l~~d~l-l~~lk~ll~----- 165 (1020)
...-|..-..+.. ...+.+++|+-+.+.......+.+ .+....++++||+|-...-+..+ ...+++++.
T Consensus 367 ~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~R~L~~L~~~F 446 (1034)
T KOG4150|consen 367 EMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLRALSDLIKGF 446 (1034)
T ss_pred ecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHHHHHHHHHHHHH
Confidence 0000000000011 134678999999887766543322 12255678999999322111111 112333322
Q ss_pred -ccCCeEEEEeeccc--chhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCC
Q 001729 166 -KKNDLRVVLMSATA--DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCS 242 (1020)
Q Consensus 166 -~~~~lkiIlmSATl--d~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~ 242 (1020)
...+++++-.|||+ ......+.|+- ..++++.+.+.+.+...-| .+.-..
T Consensus 447 ~~~~~~~~~~~~~~~K~~~~~~~~~~~~----~E~~Li~~DGSPs~~K~~V-----------------------~WNP~~ 499 (1034)
T KOG4150|consen 447 EASINMGVYDGDTPYKDRTRLRSELANL----SELELVTIDGSPSSEKLFV-----------------------LWNPSA 499 (1034)
T ss_pred HhhcCcceEeCCCCcCCHHHHHHHhcCC----cceEEEEecCCCCccceEE-----------------------EeCCCC
Confidence 24678999999997 33344555542 3466666665543211100 000000
Q ss_pred CCCCcccccccChhHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccc----cccce--EEEEeecccchHH
Q 001729 243 GPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKP----LSSFF--KVHILHSSVDTEQ 316 (1020)
Q Consensus 243 ~~~~~~~~~~~~~~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~----~~~~~--~v~~lHs~l~~~e 316 (1020)
-+...........+...+..+++ .. +-+++.||+.++-++.+....+. .++.+ .+..+.||-..++
T Consensus 500 ~P~~~~~~~~~i~E~s~~~~~~i----~~----~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~D 571 (1034)
T KOG4150|consen 500 PPTSKSEKSSKVVEVSHLFAEMV----QH----GLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAED 571 (1034)
T ss_pred CCcchhhhhhHHHHHHHHHHHHH----Hc----CCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhh
Confidence 00000000111112222222332 22 23789999999988765544331 11111 2445678889999
Q ss_pred HHHHHHhhhccc-eEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc-cCCee
Q 001729 317 ALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQV 394 (1020)
Q Consensus 317 r~~i~~~f~~gr-kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c 394 (1020)
|++++...=.|. +-|||||.+|-||||.+.+.|+.+|+. .|-++++|..|||||. .+...
T Consensus 572 RRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP------------------~S~aNl~QQ~GRAGRRNk~SLa 633 (1034)
T KOG4150|consen 572 RRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGFP------------------GSIANLWQQAGRAGRRNKPSLA 633 (1034)
T ss_pred HHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccCc------------------hhHHHHHHHhccccccCCCceE
Confidence 999998766666 999999999999999999999998873 2778889999999998 55544
Q ss_pred EE
Q 001729 395 YR 396 (1020)
Q Consensus 395 ~r 396 (1020)
..
T Consensus 634 vy 635 (1034)
T KOG4150|consen 634 VY 635 (1034)
T ss_pred EE
Confidence 33
No 133
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.07 E-value=1.7e-10 Score=112.49 Aligned_cols=132 Identities=19% Similarity=0.230 Sum_probs=83.4
Q ss_pred hhccEEEEecCCCCCCcCC-hhhhhhhcC--CccccccCCceehhhhHHHHHhhccccccCcccceecccc-ccccccce
Q 001729 40 LENRVTLIVGETGCGKSSQ-VPQFLLAEN--MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHS-KHLSERSK 115 (1020)
Q Consensus 40 ~~~~~vII~apTGSGKTt~-ip~~lle~~--~~~IivtqPrrlaa~sva~rva~e~~~~lg~~Vgy~i~~~-~~~~~~t~ 115 (1020)
.+++..+|...+|+|||+. +|.++.+.. ..+++++.|+|+++..+++.+... . +.+..... .....+.-
T Consensus 2 ~kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~---~----~~~~t~~~~~~~~g~~~ 74 (148)
T PF07652_consen 2 RKGELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGL---P----VRFHTNARMRTHFGSSI 74 (148)
T ss_dssp STTEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTS---S----EEEESTTSS----SSSS
T ss_pred CCCceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcC---C----cccCceeeeccccCCCc
Confidence 3578889999999999986 666666543 348999999999999999877542 1 22221111 12345677
Q ss_pred EEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhccCCeEEEEeecccc
Q 001729 116 IVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATAD 180 (1020)
Q Consensus 116 Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmSATld 180 (1020)
|-+||.+.+.+.+.+ +....+|++||+||+|--+..+=...+.++... .....++|.||||++
T Consensus 75 i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~-~~g~~~~i~mTATPP 137 (148)
T PF07652_consen 75 IDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTSIAARGYLRELA-ESGEAKVIFMTATPP 137 (148)
T ss_dssp EEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHHHHHHHHHHHHH-HTTS-EEEEEESS-T
T ss_pred ccccccHHHHHHhcC-cccccCccEEEEeccccCCHHHHhhheeHHHhh-hccCeeEEEEeCCCC
Confidence 899999998888766 445669999999999942222212233444442 234578999999975
No 134
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.03 E-value=3.1e-09 Score=124.80 Aligned_cols=351 Identities=16% Similarity=0.212 Sum_probs=191.4
Q ss_pred cchhhhHHHHHHHHh----hccEEEEecCCCCCCcCChhhhh---hh-c-CCccccccCCceehhhhHHHHHhhcccccc
Q 001729 26 LPVMSLREKIVEKVL----ENRVTLIVGETGCGKSSQVPQFL---LA-E-NMEPILCTQPRRFAVVAVAKMVAKGRNCEL 96 (1020)
Q Consensus 26 LPi~~~Q~eil~~i~----~~~~vII~apTGSGKTt~ip~~l---le-~-~~~~IivtqPrrlaa~sva~rva~e~~~~l 96 (1020)
=.+.+||-+-+..+. ++-+.|+.-+-|-|||.|-..++ .. . ..+.-+|+.|...+...+.+.-.---+..+
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~NW~~Ef~rf~P~l~~ 245 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDNWMNEFKRFTPSLNV 245 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHHHHHHHHHhCCCcce
Confidence 456788888777653 55679999999999997654443 22 1 235677777865554433332111111111
Q ss_pred Cccccee-----ccccccccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeeh-hhhhHhhccCCe
Q 001729 97 GGEVGYH-----IGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLV-CVKQLLLKKNDL 170 (1020)
Q Consensus 97 g~~Vgy~-----i~~~~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~-~lk~ll~~~~~l 170 (1020)
-..+|-. ...+-......+|+++|.+|.++.-. .+.-...+++|||||| |.-+..-.+. .++.+ .-.
T Consensus 246 ~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~--~lk~~~W~ylvIDEaH-RiKN~~s~L~~~lr~f----~~~ 318 (971)
T KOG0385|consen 246 VVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKS--FLKKFNWRYLVIDEAH-RIKNEKSKLSKILREF----KTD 318 (971)
T ss_pred EEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHH--HHhcCCceEEEechhh-hhcchhhHHHHHHHHh----ccc
Confidence 1112211 00111123478999999999988622 2222378999999999 7777654433 22332 222
Q ss_pred EEEEeeccc---------------------chhhhhHHHhhcC---CcceE-----------------EEE-EecCCCc-
Q 001729 171 RVVLMSATA---------------------DITKYRDYFRDLG---RGERV-----------------EVL-AIPSTNQ- 207 (1020)
Q Consensus 171 kiIlmSATl---------------------d~~~~~~~f~~~~---~~~~v-----------------~v~-~~p~~~~- 207 (1020)
.-++++.|+ +.+.|..||+.-. ....+ .|. ..|....
T Consensus 319 nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKkE~ 398 (971)
T KOG0385|consen 319 NRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPKKEL 398 (971)
T ss_pred ceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCccee
Confidence 346667773 2467777776420 00000 000 0000000
Q ss_pred ----hhhHHHhhhHHHHHHHHhcCCcccc--------ccccccccCC---------CC-CCcccccccCh--hHHHHHHH
Q 001729 208 ----RTIFQRRVSYLEQVTELLGVDHGMT--------SELSSLRYCS---------GP-SPSMANAEIKP--EVHKLIHD 263 (1020)
Q Consensus 208 ----~~~~~v~v~yl~~~~~~l~~~~~~~--------~~~~~~~~~~---------~~-~~~~~~~~~~~--~~~~li~~ 263 (1020)
+..-..+..|-.-+...+....+.. .-...++.+. .+ .+...+..+.. ...-++.+
T Consensus 399 ~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm~vLDk 478 (971)
T KOG0385|consen 399 IIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKMLVLDK 478 (971)
T ss_pred eEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcceehHHH
Confidence 0000000111110000000000000 0000011110 01 11111100000 00123334
Q ss_pred hhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhcc---c-eEEEEeccccc
Q 001729 264 LVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSH---R-KVILATNIAES 339 (1020)
Q Consensus 264 ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~g---r-kVLVATniae~ 339 (1020)
++..+... +.+||||-.=....+-+-+++. ..++...-+.|+++.++|...++.|... . -.+++|-..+-
T Consensus 479 LL~~Lk~~----GhRVLIFSQmt~mLDILeDyc~--~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGL 552 (971)
T KOG0385|consen 479 LLPKLKEQ----GHRVLIFSQMTRMLDILEDYCM--LRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGL 552 (971)
T ss_pred HHHHHHhC----CCeEEEeHHHHHHHHHHHHHHH--hcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccccc
Confidence 44444433 4689999776665555555544 3458888999999999999999999543 2 57899999999
Q ss_pred cccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcccCCeeEEeechhhcc
Q 001729 340 SVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFG 404 (1020)
Q Consensus 340 GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~c~rLys~~~~~ 404 (1020)
|||+-..+.||- ||..-+.+. --+|++|+-|.|-..+=++|||+++...+
T Consensus 553 GINL~aADtVIl--------yDSDWNPQ~-------DLQAmDRaHRIGQ~K~V~V~RLitentVE 602 (971)
T KOG0385|consen 553 GINLTAADTVIL--------YDSDWNPQV-------DLQAMDRAHRIGQKKPVVVYRLITENTVE 602 (971)
T ss_pred ccccccccEEEE--------ecCCCCchh-------hhHHHHHHHhhCCcCceEEEEEeccchHH
Confidence 999999999997 877665442 35778999999999999999999986544
No 135
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.03 E-value=8.1e-10 Score=132.21 Aligned_cols=122 Identities=16% Similarity=0.126 Sum_probs=72.9
Q ss_pred cchhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhh--hcCCccccccCCceehhhhHHHHHhhccccccCccccee
Q 001729 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLL--AENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYH 103 (1020)
Q Consensus 26 LPi~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~ll--e~~~~~IivtqPrrlaa~sva~rva~e~~~~lg~~Vgy~ 103 (1020)
|-++++-.+++-.+.-++--|....||+|||..+..+++ ......+-++.|+..+|.+-++.+...+. .+|..||+.
T Consensus 75 lg~r~ydvQlig~l~Ll~G~VaEM~TGEGKTLvA~l~a~l~AL~G~~VhvvT~NdyLA~RDae~m~~ly~-~LGLsvg~i 153 (764)
T PRK12326 75 LGLRPFDVQLLGALRLLAGDVIEMATGEGKTLAGAIAAAGYALQGRRVHVITVNDYLARRDAEWMGPLYE-ALGLTVGWI 153 (764)
T ss_pred cCCCcchHHHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHHHcCCCeEEEcCCHHHHHHHHHHHHHHHH-hcCCEEEEE
Confidence 334444444555544334447799999999955444433 33334677778888988888887765443 356666655
Q ss_pred ccccc----cccccceEEeeechhh-----hHHHHH--hccccceeEEEEeecccc
Q 001729 104 IGHSK----HLSERSKIVFKTAGVL-----LDEMRD--RGLNALKYKVIILDEVHE 148 (1020)
Q Consensus 104 i~~~~----~~~~~t~Iiv~Tpg~L-----l~~l~~--~~l~l~~~s~IIIDEaHE 148 (1020)
..... +..-.++|+|+|..-| .+.+.. +..-...+.+.|||||+-
T Consensus 154 ~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDS 209 (764)
T PRK12326 154 TEESTPEERRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADS 209 (764)
T ss_pred CCCCCHHHHHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhh
Confidence 33221 1123589999998653 222321 111123688999999994
No 136
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=98.98 E-value=6.9e-10 Score=98.44 Aligned_cols=70 Identities=33% Similarity=0.454 Sum_probs=63.2
Q ss_pred ceEEEEeecccchHHHHHHHHhhhccc-eEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHH
Q 001729 302 FFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAE 380 (1020)
Q Consensus 302 ~~~v~~lHs~l~~~er~~i~~~f~~gr-kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~ 380 (1020)
++.+..+||+++.++|..+++.|+.+. +||++|+++++|+|+|+++.||. ++++ .+.+.+.
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~--------~~~~----------~~~~~~~ 72 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVII--------YDLP----------WSPASYI 72 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEE--------eCCC----------CCHHHHH
Confidence 578999999999999999999999888 99999999999999999999998 5553 3677789
Q ss_pred HhcCCCCcc
Q 001729 381 QRRGRTGRT 389 (1020)
Q Consensus 381 QR~GRAGR~ 389 (1020)
|++||+||.
T Consensus 73 Q~~gR~~R~ 81 (82)
T smart00490 73 QRIGRAGRA 81 (82)
T ss_pred HhhcccccC
Confidence 999999995
No 137
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=98.95 E-value=1.5e-09 Score=132.51 Aligned_cols=329 Identities=12% Similarity=0.110 Sum_probs=183.9
Q ss_pred hhhHHHHHHHH-hhccEEEEecCCCCCCcCChhhhhhhc-CCccccccCCceehhhhHHHHHhhccccccCcccceec--
Q 001729 29 MSLREKIVEKV-LENRVTLIVGETGCGKSSQVPQFLLAE-NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHI-- 104 (1020)
Q Consensus 29 ~~~Q~eil~~i-~~~~~vII~apTGSGKTt~ip~~lle~-~~~~IivtqPrrlaa~sva~rva~e~~~~lg~~Vgy~i-- 104 (1020)
.++|.++++.+ ..|++|+|.+|+|||||...-..++.. ...+++.+.|....+..++..+...++.-.|..+--..
T Consensus 1145 n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge 1224 (1674)
T KOG0951|consen 1145 NPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLRPDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTGE 1224 (1674)
T ss_pred CCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcCCccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecCCc
Confidence 34566666665 467899999999999997776666652 23478888888877777776665554433443222111
Q ss_pred -cccccccccceEEeeechhhhHHHHHhccccceeEEEEeeccccccccc-ceeehh--hhhH-hhccCCeEEEEeeccc
Q 001729 105 -GHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVES-DLVLVC--VKQL-LLKKNDLRVVLMSATA 179 (1020)
Q Consensus 105 -~~~~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~-d~ll~~--lk~l-l~~~~~lkiIlmSATl 179 (1020)
..+.......+|+++||+.+-.. + ..+.+++.|.||.|.-+-.. ..+..+ .+.+ ...-..+|++.+|..+
T Consensus 1225 ~s~~lkl~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~q~~k~ir~v~ls~~l 1299 (1674)
T KOG0951|consen 1225 TSLDLKLLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIASQLEKKIRVVALSSSL 1299 (1674)
T ss_pred cccchHHhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhcccCCceEEEEeeHHHHHHHHHhheeEEEeehhh
Confidence 12233456789999999987554 2 34588999999999533111 111111 1211 1223568999999886
Q ss_pred -chhhhhHHHhhcCCcceEEEEEecCCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCcccccccChhHH
Q 001729 180 -DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVH 258 (1020)
Q Consensus 180 -d~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (1020)
++..+ -++.. ..+.+.+... +..|.++. -...... ..+. ....+....+
T Consensus 1300 ana~d~-ig~s~------~~v~Nf~p~~--R~~Pl~i~----------------i~~~~~~----~~~~-~~~am~~~~~ 1349 (1674)
T KOG0951|consen 1300 ANARDL-IGASS------SGVFNFSPSV--RPVPLEIH----------------IQSVDIS----HFES-RMLAMTKPTY 1349 (1674)
T ss_pred ccchhh-ccccc------cceeecCccc--CCCceeEE----------------EEEeccc----hhHH-HHHHhhhhHH
Confidence 65555 11111 1122211111 11111000 0000000 0000 0000001111
Q ss_pred HHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhcccc--------------------ccceEEEEeecccchHHHH
Q 001729 259 KLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL--------------------SSFFKVHILHSSVDTEQAL 318 (1020)
Q Consensus 259 ~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~--------------------~~~~~v~~lHs~l~~~er~ 318 (1020)
. .+..+.. .+++.+||+|+++++..++..+-.. ...+...+-|-+|+...+.
T Consensus 1350 ~---ai~~~a~-----~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~ 1421 (1674)
T KOG0951|consen 1350 T---AIVRHAG-----NRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQE 1421 (1674)
T ss_pred H---HHHHHhc-----CCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHH
Confidence 1 1222221 2468999999999988766544311 0112222238889988888
Q ss_pred HHHHhhhccc-eEEEEeccccccccccceeEEeecccceeeeeecccc-ccceeeEEeehhHHHHhcCCCCcccCCeeEE
Q 001729 319 MAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRK-IDSAELVWVSQSQAEQRRGRTGRTCDGQVYR 396 (1020)
Q Consensus 319 ~i~~~f~~gr-kVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~-~~~l~~~~iSkas~~QR~GRAGR~~~G~c~r 396 (1020)
.+-..|..|. +|+|...- -.|+-...--+|| .| ..+||.... .+.| +-+...|+.|+|.| .|+|+.
T Consensus 1422 iv~~l~e~g~i~v~v~s~~-~~~~~~~~~lVvv-mg---t~~ydg~e~~~~~y-----~i~~ll~m~G~a~~--~~k~vi 1489 (1674)
T KOG0951|consen 1422 IVQQLFEAGAIQVCVMSRD-CYGTKLKAHLVVV-MG---TQYYDGKEHSYEDY-----PIAELLQMVGLASG--AGKCVI 1489 (1674)
T ss_pred HHHHHHhcCcEEEEEEEcc-cccccccceEEEE-ec---ceeecccccccccC-----chhHHHHHhhhhcC--CccEEE
Confidence 8888999888 77776654 6676654333333 22 344776542 2333 66889999999998 788888
Q ss_pred eech---hhcccccccCCc
Q 001729 397 LVTK---SFFGTLEDHECP 412 (1020)
Q Consensus 397 Lys~---~~~~~l~~~~~P 412 (1020)
+... ..|..+.....|
T Consensus 1490 ~~~~~~k~yykkfl~e~lP 1508 (1674)
T KOG0951|consen 1490 MCHTPKKEYYKKFLYEPLP 1508 (1674)
T ss_pred EecCchHHHHHHhccCcCc
Confidence 8753 345666555555
No 138
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=98.92 E-value=9e-09 Score=117.18 Aligned_cols=108 Identities=23% Similarity=0.291 Sum_probs=91.9
Q ss_pred ccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc-eEEEEeccccccccccceeEEeecccc
Q 001729 277 KSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRS 355 (1020)
Q Consensus 277 g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVLVATniae~GIdIp~V~~VId~G~~ 355 (1020)
.++||-+-|++.+|.+.++|. ..++++..+|+++..-+|..+++..+.|. .|||.-|.+-.|+|+|.|..|.-
T Consensus 447 eRvLVTtLTKkmAEdLT~Yl~--e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAI---- 520 (663)
T COG0556 447 ERVLVTTLTKKMAEDLTEYLK--ELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAI---- 520 (663)
T ss_pred CeEEEEeehHHHHHHHHHHHH--hcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEE----
Confidence 589999999999999999998 45689999999999999999999999999 99999999999999999999974
Q ss_pred eeeeeeccccccceeeEEeehhHHHHhcCCCCcccCCeeEEeec
Q 001729 356 LQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVT 399 (1020)
Q Consensus 356 k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~c~rLys 399 (1020)
.|.... .+ .-|-.+.+|-+|||.|.-.|+++....
T Consensus 521 ----lDADKe--GF---LRse~SLIQtIGRAARN~~GkvIlYAD 555 (663)
T COG0556 521 ----LDADKE--GF---LRSERSLIQTIGRAARNVNGKVILYAD 555 (663)
T ss_pred ----eecCcc--cc---ccccchHHHHHHHHhhccCCeEEEEch
Confidence 343321 11 125567799999999999999885443
No 139
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.91 E-value=1.7e-08 Score=119.46 Aligned_cols=127 Identities=17% Similarity=0.227 Sum_probs=98.4
Q ss_pred HHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc---eEEEEe
Q 001729 258 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR---KVILAT 334 (1020)
Q Consensus 258 ~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr---kVLVAT 334 (1020)
.+.+..++...+.. +.++|+|..++..+.-+-..|.. ..++...-+.|..+...|..+.+.|..+. -.|++|
T Consensus 532 m~vl~~ll~~W~kq----g~rvllFsqs~~mLdilE~fL~~-~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTT 606 (923)
T KOG0387|consen 532 MKVLAKLLKDWKKQ----GDRVLLFSQSRQMLDILESFLRR-AKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTT 606 (923)
T ss_pred HHHHHHHHHHHhhC----CCEEEEehhHHHHHHHHHHHHHh-cCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEe
Confidence 34444555444433 34899999999988888777764 45788999999999999999999998665 568899
Q ss_pred ccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcccCCeeEEeechhhcc
Q 001729 335 NIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFG 404 (1020)
Q Consensus 335 niae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~c~rLys~~~~~ 404 (1020)
-+.+-|+|+-+.+-||- |||.-+.+.- .+|.-|+=|-|-.+.=.+|||.+....+
T Consensus 607 rvGGLGlNLTgAnRVII--------fDPdWNPStD-------~QAreRawRiGQkkdV~VYRL~t~gTIE 661 (923)
T KOG0387|consen 607 RVGGLGLNLTGANRVII--------FDPDWNPSTD-------NQARERAWRIGQKKDVVVYRLMTAGTIE 661 (923)
T ss_pred cccccccccccCceEEE--------ECCCCCCccc-------hHHHHHHHhhcCccceEEEEEecCCcHH
Confidence 99999999998888886 9988776544 4566677777777788899999975443
No 140
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.91 E-value=3e-08 Score=124.92 Aligned_cols=128 Identities=15% Similarity=0.054 Sum_probs=77.9
Q ss_pred HHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc-eEEEEec
Q 001729 257 VHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATN 335 (1020)
Q Consensus 257 ~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVLVATn 335 (1020)
..+.+.+.+..+. .. +|++||+.++.+..+.+++.|... ...+ ...|.-.. +..+++.|+.+. .||++|+
T Consensus 632 ~~~~~~~~i~~~~-~~---~g~~LVLFtS~~~l~~v~~~l~~~--~~~~-l~Qg~~~~--~~~l~~~F~~~~~~vLlG~~ 702 (820)
T PRK07246 632 YAEEIAKRLEELK-QL---QQPILVLFNSKKHLLAVSDLLDQW--QVSH-LAQEKNGT--AYNIKKRFDRGEQQILLGLG 702 (820)
T ss_pred HHHHHHHHHHHHH-hc---CCCEEEEECcHHHHHHHHHHHhhc--CCcE-EEeCCCcc--HHHHHHHHHcCCCeEEEecc
Confidence 3444444444444 21 479999999999999999888643 2333 33332111 345678888765 9999999
Q ss_pred ccccccccc--ceeEEeecccceeeeeecccc--------------ccceeeE--EeehhHHHHhcCCCCccc--CCeeE
Q 001729 336 IAESSVTIP--KVAYVIDSCRSLQVFWDVNRK--------------IDSAELV--WVSQSQAEQRRGRTGRTC--DGQVY 395 (1020)
Q Consensus 336 iae~GIdIp--~V~~VId~G~~k~~~yd~~~~--------------~~~l~~~--~iSkas~~QR~GRAGR~~--~G~c~ 395 (1020)
..-+|||+| +...||-.++. |.+|.. -+.+... |-.--.+.|-+||.=|.. .|.++
T Consensus 703 sFwEGVD~p~~~~~~viI~kLP----F~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ 778 (820)
T PRK07246 703 SFWEGVDFVQADRMIEVITRLP----FDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVL 778 (820)
T ss_pred hhhCCCCCCCCCeEEEEEecCC----CCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEE
Confidence 999999997 34555544543 222211 1111111 111245789999999984 57655
Q ss_pred Ee
Q 001729 396 RL 397 (1020)
Q Consensus 396 rL 397 (1020)
.|
T Consensus 779 il 780 (820)
T PRK07246 779 IL 780 (820)
T ss_pred EE
Confidence 44
No 141
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.90 E-value=1.7e-08 Score=121.88 Aligned_cols=327 Identities=17% Similarity=0.165 Sum_probs=173.0
Q ss_pred hhccEEEEecCCCCCCcCChhhhhhhc---CCccccccCCceehhhhHHHHHhhccccccCcccceecccccccc-ccce
Q 001729 40 LENRVTLIVGETGCGKSSQVPQFLLAE---NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLS-ERSK 115 (1020)
Q Consensus 40 ~~~~~vII~apTGSGKTt~ip~~lle~---~~~~IivtqPrrlaa~sva~rva~e~~~~lg~~Vgy~i~~~~~~~-~~t~ 115 (1020)
....+.+|.+|.||||||++..++.+. ...+++++.-|+.++.+++.++.... +.+.+-|......... ...+
T Consensus 47 ~~~~V~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~~---l~gFv~Y~d~~~~~i~~~~~~ 123 (824)
T PF02399_consen 47 QKRGVLVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKAG---LSGFVNYLDSDDYIIDGRPYD 123 (824)
T ss_pred CCCCeEEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhcC---CCcceeeeccccccccccccC
Confidence 356789999999999999999998775 34589999999999999999886531 1223334422111111 1235
Q ss_pred EEeeechhhhHHHHHhccccceeEEEEeecccc--cccccc------eeehhhhhHhhccCCeEEEEeecccchhhhhHH
Q 001729 116 IVFKTAGVLLDEMRDRGLNALKYKVIILDEVHE--RSVESD------LVLVCVKQLLLKKNDLRVVLMSATADITKYRDY 187 (1020)
Q Consensus 116 Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHE--R~l~~d------~ll~~lk~ll~~~~~lkiIlmSATld~~~~~~~ 187 (1020)
-++++.+.|.+... . .+.+|++|||||+-. +.+.+. ....+++.+++ ..-++|+|-||++.. .-++
T Consensus 124 rLivqIdSL~R~~~-~--~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~--~ak~VI~~DA~ln~~-tvdF 197 (824)
T PF02399_consen 124 RLIVQIDSLHRLDG-S--LLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIR--NAKTVIVMDADLNDQ-TVDF 197 (824)
T ss_pred eEEEEehhhhhccc-c--cccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHH--hCCeEEEecCCCCHH-HHHH
Confidence 55666667765432 1 234799999999973 001111 11122333332 345899999999844 4556
Q ss_pred HhhcCCcceEEEEEec----CCCchhhHHHhhhHHHHHHHHhcCCccccccccccccCCCCCCcccccccChhHHHHHHH
Q 001729 188 FRDLGRGERVEVLAIP----STNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHD 263 (1020)
Q Consensus 188 f~~~~~~~~v~v~~~p----~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 263 (1020)
+..+..++++.++.-. +.......-....-.+.....++...+.........-.................+. .
T Consensus 198 l~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~---~ 274 (824)
T PF02399_consen 198 LASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFS---E 274 (824)
T ss_pred HHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHH---H
Confidence 6665445555544321 11111000000000111122222000000000000000000000000011111222 2
Q ss_pred hhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc-eEEEEecccccccc
Q 001729 264 LVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVT 342 (1020)
Q Consensus 264 ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVLVATniae~GId 342 (1020)
+...+.. ++.|-||+.|....+.+++..... ...|..++|.-+.. .+ +. -++ +|++=|.+...|++
T Consensus 275 L~~~L~~-----gknIcvfsSt~~~~~~v~~~~~~~--~~~Vl~l~s~~~~~---dv-~~--W~~~~VviYT~~itvG~S 341 (824)
T PF02399_consen 275 LLARLNA-----GKNICVFSSTVSFAEIVARFCARF--TKKVLVLNSTDKLE---DV-ES--WKKYDVVIYTPVITVGLS 341 (824)
T ss_pred HHHHHhC-----CCcEEEEeChHHHHHHHHHHHHhc--CCeEEEEcCCCCcc---cc-cc--ccceeEEEEeceEEEEec
Confidence 2222222 357889999998888888777644 45677777765544 22 11 345 99999999999999
Q ss_pred ccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcccCCeeEEeechhhc
Q 001729 343 IPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFF 403 (1020)
Q Consensus 343 Ip~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~c~rLys~~~~ 403 (1020)
+.+..+=--.++.|...+ +. +..+..|+.||.-.......|.-+.....
T Consensus 342 f~~~HF~~~f~yvk~~~~----gp--------d~~s~~Q~lgRvR~l~~~ei~v~~d~~~~ 390 (824)
T PF02399_consen 342 FEEKHFDSMFAYVKPMSY----GP--------DMVSVYQMLGRVRSLLDNEIYVYIDASGA 390 (824)
T ss_pred cchhhceEEEEEecCCCC----CC--------cHHHHHHHHHHHHhhccCeEEEEEecccc
Confidence 975432111111121111 11 22346899999977788888877765433
No 142
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.90 E-value=3.9e-09 Score=129.34 Aligned_cols=124 Identities=15% Similarity=0.129 Sum_probs=80.0
Q ss_pred cCcchhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhh--hcCCccccccCCceehhhhHHHHHhhccccccCcccc
Q 001729 24 SSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLL--AENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (1020)
Q Consensus 24 ~~LPi~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~ll--e~~~~~IivtqPrrlaa~sva~rva~e~~~~lg~~Vg 101 (1020)
..|-+.+|--+++-.+.=++--|..+.||+|||......++ ......+-++.|+..+|.+-++.+...+. .+|..||
T Consensus 77 R~lGm~~ydVQliGg~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~~-~lGl~v~ 155 (913)
T PRK13103 77 RVMGMRHFDVQLIGGMTLHEGKIAEMRTGEGKTLVGTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPLYE-FLGLSVG 155 (913)
T ss_pred HHhCCCcchhHHHhhhHhccCccccccCCCCChHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHhc-ccCCEEE
Confidence 34556666667777776677779999999999965444433 33334677778889999988888776543 3566666
Q ss_pred eecccc----ccccccceEEeeechhh-hHHHHHh------ccccceeEEEEeecccc
Q 001729 102 YHIGHS----KHLSERSKIVFKTAGVL-LDEMRDR------GLNALKYKVIILDEVHE 148 (1020)
Q Consensus 102 y~i~~~----~~~~~~t~Iiv~Tpg~L-l~~l~~~------~l~l~~~s~IIIDEaHE 148 (1020)
...+.. .+..-..+|+|+|..-| .+.|++. ..-...+.++||||+|-
T Consensus 156 ~i~~~~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDs 213 (913)
T PRK13103 156 IVTPFQPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDS 213 (913)
T ss_pred EECCCCCHHHHHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhh
Confidence 543221 11122489999998776 1222211 11123789999999994
No 143
>COG4889 Predicted helicase [General function prediction only]
Probab=98.84 E-value=5.5e-09 Score=123.43 Aligned_cols=100 Identities=18% Similarity=0.244 Sum_probs=71.2
Q ss_pred cEEEEecchhhHHHhhhhc-----------cccccceEEEE--eecccchHHHHHHHH---hhhccc-eEEEEecccccc
Q 001729 278 SILVFLPTYYALEQQWHLM-----------KPLSSFFKVHI--LHSSVDTEQALMAMK---ICKSHR-KVILATNIAESS 340 (1020)
Q Consensus 278 ~iLVFl~~~~~ie~l~~~L-----------~~~~~~~~v~~--lHs~l~~~er~~i~~---~f~~gr-kVLVATniae~G 340 (1020)
+.+-|+.+.++-..+++.+ .....++.+.+ ..|.|...+|.+.+. .|.... |||-..-.+.+|
T Consensus 462 RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEG 541 (1518)
T COG4889 462 RAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEG 541 (1518)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcC
Confidence 5677777766544444333 22223444444 458898888865543 345556 888888899999
Q ss_pred ccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcccCCeeE
Q 001729 341 VTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVY 395 (1020)
Q Consensus 341 IdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~c~ 395 (1020)
||+|..+-||. ||+...+-.. +|-+||.-|..+|+-|
T Consensus 542 VDVPaLDsViF--------f~pr~smVDI----------VQaVGRVMRKa~gK~y 578 (1518)
T COG4889 542 VDVPALDSVIF--------FDPRSSMVDI----------VQAVGRVMRKAKGKKY 578 (1518)
T ss_pred CCccccceEEE--------ecCchhHHHH----------HHHHHHHHHhCcCCcc
Confidence 99999999997 9998865555 9999999999887754
No 144
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.77 E-value=9.7e-08 Score=122.41 Aligned_cols=134 Identities=16% Similarity=0.175 Sum_probs=82.4
Q ss_pred HHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc-eEEEEec
Q 001729 257 VHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATN 335 (1020)
Q Consensus 257 ~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVLVATn 335 (1020)
..+.+.+.+..+.... +|++|||.++.+..+.+++.|......-....+--++....|..+++.|+.+. .||++|.
T Consensus 736 ~~~~la~~i~~l~~~~---~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~ 812 (928)
T PRK08074 736 YIEEVAAYIAKIAKAT---KGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTS 812 (928)
T ss_pred HHHHHHHHHHHHHHhC---CCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecC
Confidence 3344444444444332 47999999999999999998864321111222222343344677888898765 9999999
Q ss_pred cccccccccc--eeEEeecccceeeeeecccc--------------ccceee--EEeehhHHHHhcCCCCccc--CCeeE
Q 001729 336 IAESSVTIPK--VAYVIDSCRSLQVFWDVNRK--------------IDSAEL--VWVSQSQAEQRRGRTGRTC--DGQVY 395 (1020)
Q Consensus 336 iae~GIdIp~--V~~VId~G~~k~~~yd~~~~--------------~~~l~~--~~iSkas~~QR~GRAGR~~--~G~c~ 395 (1020)
...+|||+|+ .+.||-.|+. |.+|.. -+.+.. .|-..-.+.|-+||.=|.. .|.++
T Consensus 813 sFwEGVD~pg~~l~~viI~kLP----F~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ 888 (928)
T PRK08074 813 SFWEGIDIPGDELSCLVIVRLP----FAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVF 888 (928)
T ss_pred cccCccccCCCceEEEEEecCC----CCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEE
Confidence 9999999996 4777766654 332221 011100 1222345689999998884 46655
Q ss_pred Ee
Q 001729 396 RL 397 (1020)
Q Consensus 396 rL 397 (1020)
.|
T Consensus 889 il 890 (928)
T PRK08074 889 VL 890 (928)
T ss_pred Ee
Confidence 44
No 145
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.75 E-value=5e-08 Score=118.66 Aligned_cols=114 Identities=23% Similarity=0.290 Sum_probs=73.3
Q ss_pred HHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc--eEEEEecc
Q 001729 259 KLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR--KVILATNI 336 (1020)
Q Consensus 259 ~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr--kVLVATni 336 (1020)
..+.+-+...+.. +.+|||.+.+.+..+.++..|... ++.-..|++.-...|...+- ..|+ .|.||||+
T Consensus 413 ~Aii~ei~~~~~~----gqPVLVgT~SIe~SE~ls~~L~~~--gi~h~vLNAk~~e~EA~IIa---~AG~~GaVTIATNM 483 (925)
T PRK12903 413 KAVVKEVKRVHKK----GQPILIGTAQVEDSETLHELLLEA--NIPHTVLNAKQNAREAEIIA---KAGQKGAITIATNM 483 (925)
T ss_pred HHHHHHHHHHHhc----CCCEEEEeCcHHHHHHHHHHHHHC--CCCceeecccchhhHHHHHH---hCCCCCeEEEeccc
Confidence 3344444444433 469999999999999999999854 35555566643222322222 3444 99999999
Q ss_pred cccccccccee--------EEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc-cCCeeEEeec
Q 001729 337 AESSVTIPKVA--------YVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVT 399 (1020)
Q Consensus 337 ae~GIdIp~V~--------~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c~rLys 399 (1020)
|++|.||.--. +||-+.+.. |+--=.|-.|||||. .||.+-.+.|
T Consensus 484 AGRGTDI~Lg~~V~~~GGLhVIgTerhe------------------SrRIDnQLrGRaGRQGDpGss~f~lS 537 (925)
T PRK12903 484 AGRGTDIKLSKEVLELGGLYVLGTDKAE------------------SRRIDNQLRGRSGRQGDVGESRFFIS 537 (925)
T ss_pred ccCCcCccCchhHHHcCCcEEEecccCc------------------hHHHHHHHhcccccCCCCCcceEEEe
Confidence 99999996222 565422211 222237999999999 5787654444
No 146
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.75 E-value=3.2e-08 Score=120.93 Aligned_cols=123 Identities=16% Similarity=0.105 Sum_probs=70.7
Q ss_pred CcchhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhh--hcCCccccccCCceehhhhHHHHHhhccccccCcccce
Q 001729 25 SLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLL--AENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (1020)
Q Consensus 25 ~LPi~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~ll--e~~~~~IivtqPrrlaa~sva~rva~e~~~~lg~~Vgy 102 (1020)
.|-++++-.+++..+.-++.-|..+.||.|||+.+..+++ ......|-|+.+..-+|..-++.+.... ..+|-+||.
T Consensus 72 ~lG~r~ydvQlig~l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL~G~~VhVvT~NdyLA~RD~e~m~pvy-~~LGLsvg~ 150 (870)
T CHL00122 72 TLGLRHFDVQLIGGLVLNDGKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIY-RFLGLTVGL 150 (870)
T ss_pred HhCCCCCchHhhhhHhhcCCccccccCCCCchHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHHHHH-HHcCCceee
Confidence 3445566666777777677889999999999965544432 2222344445555566655555443321 234555664
Q ss_pred eccccc----cccccceEEeeechhh-----hHHHHH--hccccceeEEEEeecccc
Q 001729 103 HIGHSK----HLSERSKIVFKTAGVL-----LDEMRD--RGLNALKYKVIILDEVHE 148 (1020)
Q Consensus 103 ~i~~~~----~~~~~t~Iiv~Tpg~L-----l~~l~~--~~l~l~~~s~IIIDEaHE 148 (1020)
.....+ +..=.++|+|+|..-| .+.|.. ...-...+.+.||||||-
T Consensus 151 i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDS 207 (870)
T CHL00122 151 IQEGMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDS 207 (870)
T ss_pred eCCCCChHHHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchh
Confidence 432211 1223579999998543 333221 111123688999999994
No 147
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.68 E-value=6.4e-08 Score=118.50 Aligned_cols=132 Identities=7% Similarity=0.018 Sum_probs=86.4
Q ss_pred EEEecCCCCCCcCChhhhhh---hcCCccccccCCceehhhhHHHHHhhccc-cccCcccceecc---------cccccc
Q 001729 45 TLIVGETGCGKSSQVPQFLL---AENMEPILCTQPRRFAVVAVAKMVAKGRN-CELGGEVGYHIG---------HSKHLS 111 (1020)
Q Consensus 45 vII~apTGSGKTt~ip~~ll---e~~~~~IivtqPrrlaa~sva~rva~e~~-~~lg~~Vgy~i~---------~~~~~~ 111 (1020)
.|..+-+|||||..+.+.+. ..+ +.++++.|.-.++.++.+++...++ ..+. .|.-. +.....
T Consensus 163 ~i~~~~~GSGKTevyl~~i~~~l~~G-k~vLvLvPEi~lt~q~~~rl~~~f~~~~v~---~lhS~l~~~~R~~~w~~~~~ 238 (665)
T PRK14873 163 AVWQALPGEDWARRLAAAAAATLRAG-RGALVVVPDQRDVDRLEAALRALLGAGDVA---VLSAGLGPADRYRRWLAVLR 238 (665)
T ss_pred HHhhcCCCCcHHHHHHHHHHHHHHcC-CeEEEEecchhhHHHHHHHHHHHcCCCcEE---EECCCCCHHHHHHHHHHHhC
Confidence 34455579999987777764 334 3578888888888999999988765 3222 22211 112235
Q ss_pred ccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehh-hhh---HhhccCCeEEEEeecccchhhhhHH
Q 001729 112 ERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVC-VKQ---LLLKKNDLRVVLMSATADITKYRDY 187 (1020)
Q Consensus 112 ~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~-lk~---ll~~~~~lkiIlmSATld~~~~~~~ 187 (1020)
...+|+++|-.-+.. ++.++++|||||-|+-+...+-...+ .+. +.....+..+|+.|||.+.+.+...
T Consensus 239 G~~~IViGtRSAvFa-------P~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~~~ 311 (665)
T PRK14873 239 GQARVVVGTRSAVFA-------PVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQALV 311 (665)
T ss_pred CCCcEEEEcceeEEe-------ccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHHHH
Confidence 568999999766643 45589999999999755544322111 122 2233467899999999887766543
No 148
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.63 E-value=1.7e-06 Score=105.35 Aligned_cols=106 Identities=15% Similarity=0.180 Sum_probs=75.1
Q ss_pred EEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc---e-EEEEeccccccccccceeEEeecccce
Q 001729 281 VFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR---K-VILATNIAESSVTIPKVAYVIDSCRSL 356 (1020)
Q Consensus 281 VFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr---k-VLVATniae~GIdIp~V~~VId~G~~k 356 (1020)
|.+.......++.+.+.... ++.+..|||.|+..+|..+.+.|..-. + .+++|-+.+.||++-+.+-||-
T Consensus 599 v~Isny~~tldl~e~~~~~~-g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil----- 672 (776)
T KOG0390|consen 599 VLISNYTQTLDLFEQLCRWR-GYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLIL----- 672 (776)
T ss_pred EEeccHHHHHHHHHHHHhhc-CceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEE-----
Confidence 33445555555555554444 799999999999999999999996433 3 5667888899999988888886
Q ss_pred eeeeeccccccceeeEEeehhHHHHhcCCCCcccCCeeEEeechhh
Q 001729 357 QVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSF 402 (1020)
Q Consensus 357 ~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~c~rLys~~~ 402 (1020)
||+.-+...- .+|+=|+=|-|-.++-..|||.+...
T Consensus 673 ---~D~dWNPa~d-------~QAmaR~~RdGQKk~v~iYrLlatGt 708 (776)
T KOG0390|consen 673 ---FDPDWNPAVD-------QQAMARAWRDGQKKPVYIYRLLATGT 708 (776)
T ss_pred ---eCCCCCchhH-------HHHHHHhccCCCcceEEEEEeecCCC
Confidence 8887765443 23334444444446788899988653
No 149
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.55 E-value=6e-07 Score=109.86 Aligned_cols=125 Identities=14% Similarity=0.132 Sum_probs=74.5
Q ss_pred ccCcchhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcC--CccccccCCceehhhhHHHHHhhccccccCccc
Q 001729 23 FSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN--MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEV 100 (1020)
Q Consensus 23 r~~LPi~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~--~~~IivtqPrrlaa~sva~rva~e~~~~lg~~V 100 (1020)
+..|-+.++--+++-.+.=++--|..+.||-|||+.+..+++-+. ...|-|+.+..-+|..-++.+..... .+|-+|
T Consensus 79 ~R~lG~r~ydVQliGgl~Lh~G~IAEM~TGEGKTL~atlpaylnAL~GkgVhVVTvNdYLA~RDae~m~~vy~-~LGLtv 157 (939)
T PRK12902 79 KRVLGMRHFDVQLIGGMVLHEGQIAEMKTGEGKTLVATLPSYLNALTGKGVHVVTVNDYLARRDAEWMGQVHR-FLGLSV 157 (939)
T ss_pred HHHhCCCcchhHHHhhhhhcCCceeeecCCCChhHHHHHHHHHHhhcCCCeEEEeCCHHHHHhHHHHHHHHHH-HhCCeE
Confidence 345666677777888877677789999999999966554444322 23444444555555555554443221 345556
Q ss_pred ceeccc----cccccccceEEeeechhh-----hHHHHHh--ccccceeEEEEeecccc
Q 001729 101 GYHIGH----SKHLSERSKIVFKTAGVL-----LDEMRDR--GLNALKYKVIILDEVHE 148 (1020)
Q Consensus 101 gy~i~~----~~~~~~~t~Iiv~Tpg~L-----l~~l~~~--~l~l~~~s~IIIDEaHE 148 (1020)
|..... +.+..-.++|+|+|..-| .+.|... ..-...+.+.|||||+-
T Consensus 158 g~i~~~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDS 216 (939)
T PRK12902 158 GLIQQDMSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDS 216 (939)
T ss_pred EEECCCCChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccc
Confidence 644321 122233689999999766 3333321 11123788899999984
No 150
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.49 E-value=3.5e-07 Score=112.90 Aligned_cols=132 Identities=21% Similarity=0.248 Sum_probs=97.5
Q ss_pred cccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhc---cc-eEEEEeccccccccccceeEEee
Q 001729 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKS---HR-KVILATNIAESSVTIPKVAYVID 351 (1020)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~---gr-kVLVATniae~GIdIp~V~~VId 351 (1020)
+.+||||-.=....+-++++|. ..++..--|.|++..+.|++.++.|.. .+ -.|+||-..+-|||+-..+.||-
T Consensus 699 GHrVLIFSQMVRmLDIL~eYL~--~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVII 776 (1373)
T KOG0384|consen 699 GHRVLIFSQMVRMLDILAEYLS--LRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVII 776 (1373)
T ss_pred CceEEEhHHHHHHHHHHHHHHH--HcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEE
Confidence 4699999999999999999998 455778889999999999999999853 34 78999999999999999888886
Q ss_pred cccceeeeeeccccccceeeEEeehhHHHHhcCCCCcccCCeeEEeechhhccc-ccccCCcceehhhHhHHHHHhh
Q 001729 352 SCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFGT-LEDHECPAILRLSLRLQVLLIC 427 (1020)
Q Consensus 352 ~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~c~rLys~~~~~~-l~~~~~PEI~r~~L~~~vL~l~ 427 (1020)
||..-+.+.- -+|+=|+-|.|-...=.+|||+|+..+++ |.+-. -+..-|+..|++..
T Consensus 777 --------FDSDWNPQND-------LQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERA---k~KmvLD~aVIQ~m 835 (1373)
T KOG0384|consen 777 --------FDSDWNPQND-------LQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERA---KLKMVLDHAVIQRM 835 (1373)
T ss_pred --------eCCCCCcchH-------HHHHHHHHhhcccceEEEEEEecCCchHHHHHHHH---HHHhhhHHHHHHhh
Confidence 7766555433 13334445555555678999999977652 21111 12334777777764
No 151
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=98.35 E-value=1.5e-05 Score=90.47 Aligned_cols=74 Identities=12% Similarity=0.123 Sum_probs=61.2
Q ss_pred cccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc---eEEEEeccccccccccceeEEee
Q 001729 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR---KVILATNIAESSVTIPKVAYVID 351 (1020)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr---kVLVATniae~GIdIp~V~~VId 351 (1020)
+.+.|||+.-..-.+.+...+.. .++..+-+.|..++.+|...-+.|.... --|++-..+.+|+|+...+.||.
T Consensus 492 ~~KflVFaHH~~vLd~Iq~~~~~--r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVF 568 (689)
T KOG1000|consen 492 PRKFLVFAHHQIVLDTIQVEVNK--RKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVF 568 (689)
T ss_pred CceEEEEehhHHHHHHHHHHHHH--cCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEE
Confidence 46899999999888888887773 4466778899999999999999996543 44677788999999999999995
No 152
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=98.32 E-value=4.3e-07 Score=103.67 Aligned_cols=60 Identities=32% Similarity=0.655 Sum_probs=50.6
Q ss_pred cCCCCCccceeec-cccccC-CCCCCCCcCcC----------------CCCCCccceeccCCCCCCCCCccCCCCCCC
Q 001729 732 ETPGEAPLCVYFI-NGSCNR-GTGCPFSHSLQ----------------AKRPACKFFYSLQGCRNGDSCIFSHDLGQP 791 (1020)
Q Consensus 732 ~~~~~~~~C~~f~-~G~C~~-G~~C~f~H~~~----------------~~~~~C~~f~~~g~C~~g~~C~f~H~~~~~ 791 (1020)
....++++|++|. .|.|++ |++|+|.|... .++.+|.+|...|.|+||.+|+|.|.....
T Consensus 127 p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~~ 204 (332)
T KOG1677|consen 127 PERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPSSENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEPED 204 (332)
T ss_pred cccccCCcceeeecCccccccCchhhhcCCcccccccccchhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCCccc
Confidence 3356888999999 599999 99999999862 235689999888999999999999987533
No 153
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=98.29 E-value=4.1e-07 Score=100.93 Aligned_cols=71 Identities=27% Similarity=0.561 Sum_probs=56.4
Q ss_pred cCCCCCccCCCCCccCCCCCccceeeccccccCCCCCCCCcCcC-CCCCCccceeccCCCCCCCCCccCCCC
Q 001729 718 EDVSGNQDKAVNGSETPGEAPLCVYFINGSCNRGTGCPFSHSLQ-AKRPACKFFYSLQGCRNGDSCIFSHDL 788 (1020)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~C~~f~~G~C~~G~~C~f~H~~~-~~~~~C~~f~~~g~C~~g~~C~f~H~~ 788 (1020)
....+.+.+.+...+...+..+||||+.|.|++||.|.|+|+.. .+.+.|.||...|.|.+|..|.|.|..
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~vcK~~l~glC~kgD~C~Flhe~~~~k~rec~ff~~~g~c~~~~~c~y~h~d 129 (325)
T KOG1040|consen 58 CERGPICPKSHNDVSDSRGKVVCKHWLRGLCKKGDQCEFLHEYDLTKMRECKFFSLFGECTNGKDCPYLHGD 129 (325)
T ss_pred ccCCCCCccccCCccccCCceeehhhhhhhhhccCcCcchhhhhhcccccccccccccccccccCCcccCCC
Confidence 33344445555444456778889999999999999999999863 345689999999999999999999977
No 154
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=98.13 E-value=0.0001 Score=88.22 Aligned_cols=112 Identities=22% Similarity=0.232 Sum_probs=86.8
Q ss_pred cccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc---eEEEEeccccccccccceeEEeec
Q 001729 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR---KVILATNIAESSVTIPKVAYVIDS 352 (1020)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr---kVLVATniae~GIdIp~V~~VId~ 352 (1020)
+.+||||-.-....+-+-..|. ..++...-|.|......|+.++..|.... -.|++|-..+-|||+-..+.||-
T Consensus 777 G~RVLiFSQFTqmLDILE~~L~--~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIi- 853 (941)
T KOG0389|consen 777 GDRVLIFSQFTQMLDILEVVLD--TLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVII- 853 (941)
T ss_pred CCEEEEeeHHHHHHHHHHHHHH--hcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEE-
Confidence 3689999877666655555555 34477888999999999999999997765 67899999999999999999985
Q ss_pred ccceeeeeeccccccceeeEEeehhHHHHhcCCCCcccCCeeEEeechhhcc
Q 001729 353 CRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFG 404 (1020)
Q Consensus 353 G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~c~rLys~~~~~ 404 (1020)
||..-+.- .--+|.-|+-|.|-++|=.+|||++++..+
T Consensus 854 -------hD~dFNP~-------dD~QAEDRcHRvGQtkpVtV~rLItk~TIE 891 (941)
T KOG0389|consen 854 -------HDIDFNPY-------DDKQAEDRCHRVGQTKPVTVYRLITKSTIE 891 (941)
T ss_pred -------eecCCCCc-------ccchhHHHHHhhCCcceeEEEEEEecCcHH
Confidence 55433221 223567788888888999999999987543
No 155
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.00 E-value=0.0001 Score=91.42 Aligned_cols=112 Identities=18% Similarity=0.186 Sum_probs=82.8
Q ss_pred cccEEEEecchhhHHHhhhhccc-cccceEEEEeecccchHHHHHHHHhhhccc---eEEEEeccccccccccceeEEee
Q 001729 276 EKSILVFLPTYYALEQQWHLMKP-LSSFFKVHILHSSVDTEQALMAMKICKSHR---KVILATNIAESSVTIPKVAYVID 351 (1020)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~-~~~~~~v~~lHs~l~~~er~~i~~~f~~gr---kVLVATniae~GIdIp~V~~VId 351 (1020)
+.++||||.-+..++-+.+.|.+ ..+.+.-..|.|+.++.+|.++.+.|.++. -.+++|-+.+-|+|+-+.+.||.
T Consensus 1340 qHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVF 1419 (1549)
T KOG0392|consen 1340 QHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVF 1419 (1549)
T ss_pred cceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEE
Confidence 35899999999988877766543 344455567899999999999999998874 56778999999999999999995
Q ss_pred cccceeeeeecc-ccccceeeEEeehhHHHHhcCCCCcccCCeeEEeechhhc
Q 001729 352 SCRSLQVFWDVN-RKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFF 403 (1020)
Q Consensus 352 ~G~~k~~~yd~~-~~~~~l~~~~iSkas~~QR~GRAGR~~~G~c~rLys~~~~ 403 (1020)
++.. +.+..+ +|+-|+-|.|-.+-=-+|||+++...
T Consensus 1420 --------vEHDWNPMrDL--------QAMDRAHRIGQKrvVNVyRlItrGTL 1456 (1549)
T KOG0392|consen 1420 --------VEHDWNPMRDL--------QAMDRAHRIGQKRVVNVYRLITRGTL 1456 (1549)
T ss_pred --------EecCCCchhhH--------HHHHHHHhhcCceeeeeeeehhcccH
Confidence 3222 223333 44556666665566678999887543
No 156
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=97.88 E-value=2.1e-05 Score=87.88 Aligned_cols=142 Identities=22% Similarity=0.225 Sum_probs=70.3
Q ss_pred hccEEEEecCCCCCCcCChhhhhh---hcCCc----cccccCCceehhhhHHHHHhhcccc-ccCcccceecccc-----
Q 001729 41 ENRVTLIVGETGCGKSSQVPQFLL---AENME----PILCTQPRRFAVVAVAKMVAKGRNC-ELGGEVGYHIGHS----- 107 (1020)
Q Consensus 41 ~~~~vII~apTGSGKTt~ip~~ll---e~~~~----~IivtqPrrlaa~sva~rva~e~~~-~lg~~Vgy~i~~~----- 107 (1020)
..+..|++-++|+|||.+...++. +.... .++|+.|..++ .+....+...... .+ ..+-|. +..
T Consensus 24 ~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~-~~W~~E~~~~~~~~~~-~v~~~~-~~~~~~~~ 100 (299)
T PF00176_consen 24 PPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLL-SQWKEEIEKWFDPDSL-RVIIYD-GDSERRRL 100 (299)
T ss_dssp TT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTH-HHHHHHHHHHSGT-TS--EEEES-SSCHHHHT
T ss_pred CCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchh-hhhhhhhccccccccc-cccccc-cccccccc
Confidence 346889999999999966655544 32222 37777776444 3334444443311 11 111111 111
Q ss_pred -ccccccceEEeeechhhhHH---HHHhccccceeEEEEeecccccccccceeehhhhhHhhccCCeEEEEeecccchhh
Q 001729 108 -KHLSERSKIVFKTAGVLLDE---MRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADITK 183 (1020)
Q Consensus 108 -~~~~~~t~Iiv~Tpg~Ll~~---l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmSATld~~~ 183 (1020)
.......+++++|.+.+... ...+.+...++++|||||+|. .-+.+ ....+.+.... ....++||||+-...
T Consensus 101 ~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~-~k~~~--s~~~~~l~~l~-~~~~~lLSgTP~~n~ 176 (299)
T PF00176_consen 101 SKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHR-LKNKD--SKRYKALRKLR-ARYRWLLSGTPIQNS 176 (299)
T ss_dssp TSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGG-GTTTT--SHHHHHHHCCC-ECEEEEE-SS-SSSG
T ss_pred cccccccceeeeccccccccccccccccccccccceeEEEecccc-ccccc--ccccccccccc-cceEEeecccccccc
Confidence 22345688999999999811 001111123799999999994 21111 12222222222 457788999974445
Q ss_pred hhHHHh
Q 001729 184 YRDYFR 189 (1020)
Q Consensus 184 ~~~~f~ 189 (1020)
..+++.
T Consensus 177 ~~dl~~ 182 (299)
T PF00176_consen 177 LEDLYS 182 (299)
T ss_dssp SHHHHH
T ss_pred cccccc
Confidence 555443
No 157
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.88 E-value=3.4e-05 Score=98.89 Aligned_cols=132 Identities=17% Similarity=0.181 Sum_probs=79.6
Q ss_pred cEEEEecCCCCCCcCC---hhhhhhhc-CCccccccCCceehhhhHHHHHhhccccccCcccceeccc-cccc-cccceE
Q 001729 43 RVTLIVGETGCGKSSQ---VPQFLLAE-NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGH-SKHL-SERSKI 116 (1020)
Q Consensus 43 ~~vII~apTGSGKTt~---ip~~lle~-~~~~IivtqPrrlaa~sva~rva~e~~~~lg~~Vgy~i~~-~~~~-~~~t~I 116 (1020)
+.-+|.=-||||||.. +...+++. ....|+++.=|+.+-.|+.+.+...-....-..-.-.+.. .... .....|
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~~~~s~~~Lk~~l~~~~~~i 353 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDPKAESTSELKELLEDGKGKI 353 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcccccCHHHHHHHHhcCCCcE
Confidence 3589999999999933 23334444 3347889999999988887766553211100000000000 0111 125689
Q ss_pred EeeechhhhHHHHHhc--cccceeEEEEeecccccccccceeehhhhhHhhccCCeEEEEeeccc
Q 001729 117 VFKTAGVLLDEMRDRG--LNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATA 179 (1020)
Q Consensus 117 iv~Tpg~Ll~~l~~~~--l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmSATl 179 (1020)
+|+|-+.|-....... ..-.+==+||+|||| |+-... +-..++.. .++...+++|.|+
T Consensus 354 i~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaH-RSQ~G~-~~~~~~~~---~~~a~~~gFTGTP 413 (962)
T COG0610 354 IVTTIQKFNKAVKEDELELLKRKNVVVIIDEAH-RSQYGE-LAKLLKKA---LKKAIFIGFTGTP 413 (962)
T ss_pred EEEEecccchhhhcccccccCCCcEEEEEechh-hccccH-HHHHHHHH---hccceEEEeeCCc
Confidence 9999999987765431 111244578999999 886643 33333333 3447899999996
No 158
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=97.80 E-value=5.1e-06 Score=57.97 Aligned_cols=24 Identities=38% Similarity=1.050 Sum_probs=13.9
Q ss_pred CCccceeecc-ccccCCCCCCCCcC
Q 001729 736 EAPLCVYFIN-GSCNRGTGCPFSHS 759 (1020)
Q Consensus 736 ~~~~C~~f~~-G~C~~G~~C~f~H~ 759 (1020)
++++|++|+. |.|++|++|+|+|+
T Consensus 2 k~~~C~~f~~~g~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 2 KTKLCRFFMRTGTCPFGDKCRFAHG 26 (27)
T ss_dssp TSSB-HHHHHTS--TTGGGSSSBSS
T ss_pred ccccChhhccCCccCCCCCcCccCC
Confidence 4556776664 77777777777775
No 159
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.78 E-value=0.00012 Score=91.51 Aligned_cols=69 Identities=13% Similarity=0.054 Sum_probs=54.0
Q ss_pred ccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhccCCeEEEEeecccch
Q 001729 112 ERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADI 181 (1020)
Q Consensus 112 ~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmSATld~ 181 (1020)
....|+++||.+|..-+..+.+++..++.||||||| |...+--..-+++.....+++.-|.+|||.+..
T Consensus 6 ~~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ah-r~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~ 74 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLTGIIPPELITGILVLRAD-RIIESSQEAFILRLYRQKNKTGFIKAFSDNPEA 74 (814)
T ss_pred hcCCEEEEechhhHhHHhcCCCCHHHccEEEEeecc-cccccccHHHHHHHHHHhCCCcceEEecCCCcc
Confidence 457899999999999988888888899999999999 665543333344555566777889999999743
No 160
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=97.76 E-value=2.1e-05 Score=80.38 Aligned_cols=145 Identities=19% Similarity=0.289 Sum_probs=108.1
Q ss_pred EEEeCCCcccccccccccC-CCceEeecccCCcccccCccccceeeccccchhhHHhcccCC------CCCCCCceeEEE
Q 001729 825 LLLDDTDMHFSANLACLYD-PSRIISTTCLSDSAICDTSLAGIRILWGLCHSLKTVISEAGD------NPIPWKEVKCVL 897 (1020)
Q Consensus 825 ~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 897 (1020)
|+.+|-+++|+.+|+.... +..|+||+--+......-=+.+..++..|..+--.+.=+=.. ..+...+..+|+
T Consensus 1 LlvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIi 80 (166)
T PF10354_consen 1 LLVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRII 80 (166)
T ss_pred CeeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEE
Confidence 3578999999999999888 788888877666554333345556666665555544432221 233467889999
Q ss_pred eecCccc-----cccChhhhHHHHHHHHHHHHHHHhhhcccceEEEEEEcccch-hhHHHHHhccceeeeeccCCCCCcc
Q 001729 898 WYPSLES-----YSENLESQKTLMQNFFEHLAIRMLADALYDTRVIITMNNIKF-AQLQVEKLARDSFFFLSESFPFDEM 971 (1020)
Q Consensus 898 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 971 (1020)
|+++..- ...+-.-.+.||..||+. |-++|+. +=+|.||+.+... ..-|+|++|++.-|.|.++++||..
T Consensus 81 FNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~S-a~~~L~~---~G~IhVTl~~~~py~~W~i~~lA~~~gl~l~~~~~F~~~ 156 (166)
T PF10354_consen 81 FNFPHVGGGSEDGKRNIRLNRELLRGFFKS-ASQLLKP---DGEIHVTLKDGQPYDSWNIEELAAEAGLVLVRKVPFDPS 156 (166)
T ss_pred EeCCCCCCCccchhHHHHHHHHHHHHHHHH-HHHhcCC---CCEEEEEeCCCCCCccccHHHHHHhcCCEEEEEecCCHH
Confidence 9998876 224444667899999995 5566665 7789999999876 8999999999999999999999977
Q ss_pred cc
Q 001729 972 SF 973 (1020)
Q Consensus 972 ~~ 973 (1020)
.|
T Consensus 157 ~y 158 (166)
T PF10354_consen 157 DY 158 (166)
T ss_pred HC
Confidence 66
No 161
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=97.74 E-value=4.3e-05 Score=93.03 Aligned_cols=56 Identities=14% Similarity=0.139 Sum_probs=43.1
Q ss_pred HHHHHHHhhccEEEEecCCCCCCcCChhhhhhhc----CCccccccCCceehhhhHHHHH
Q 001729 33 EKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE----NMEPILCTQPRRFAVVAVAKMV 88 (1020)
Q Consensus 33 ~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~----~~~~IivtqPrrlaa~sva~rv 88 (1020)
+.+.+++.+++.+++.|+||+|||..+..+++.. ...+++|+.|++.++.|+.+.+
T Consensus 7 ~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~l 66 (636)
T TIGR03117 7 LNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSEL 66 (636)
T ss_pred HHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHHH
Confidence 4455666778999999999999997777766542 3468899999999988887633
No 162
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=97.74 E-value=2e-05 Score=84.18 Aligned_cols=101 Identities=23% Similarity=0.407 Sum_probs=69.8
Q ss_pred CCccceeec-cccccC---CCCCCCC---cCc----------CCCCCCccceeccCCCCCCCCCccCCCCCCCCCCCCCC
Q 001729 736 EAPLCVYFI-NGSCNR---GTGCPFS---HSL----------QAKRPACKFFYSLQGCRNGDSCIFSHDLGQPVLPSSSF 798 (1020)
Q Consensus 736 ~~~~C~~f~-~G~C~~---G~~C~f~---H~~----------~~~~~~C~~f~~~g~C~~g~~C~f~H~~~~~~~~~~~~ 798 (1020)
..++|.-|. .|.|.+ |+.|.|+ |.. ..++.||+.|...|.|.+|.+|.|.|..........-.
T Consensus 229 ~~~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~k~k~~~frTePcinwe~sGyc~yg~Rc~F~hgd~~~ie~~~~~ 308 (351)
T COG5063 229 NPELCESFTRKGTCPYWISGVKCQFACRGHGLNELKSKKKKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDSDIEMYEEA 308 (351)
T ss_pred CHHHhhccCcCCCCccccccccccccccccccccccccccccccccCCccchhhcccCccccccccccCChhhccccccc
Confidence 448899999 599999 9999999 987 23567999999999999999999999886654433311
Q ss_pred cCCCCCCCcchhhhhhcccCCCCCeEEEEeCCCcccccc
Q 001729 799 TCLPEDGVANAASLLRLFPTSSDGSILLLDDTDMHFSAN 837 (1020)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 837 (1020)
...--.+..........+|.+++ .-..++.++++++..
T Consensus 309 ~~~y~~~~crt~~~~g~~p~g~~-~c~~~dkkn~~~s~~ 346 (351)
T COG5063 309 SLGYLDGPCRTRAKGGAFPSGGA-VCKSFDKKNLDFSVK 346 (351)
T ss_pred cccccccccccccccCccCCCCc-hhhccccchhhhhhh
Confidence 00011111122233445666665 445588889888764
No 163
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=97.74 E-value=7.2e-06 Score=57.22 Aligned_cols=26 Identities=38% Similarity=0.833 Sum_probs=20.5
Q ss_pred CCCCccceeccCCCCCCCCCccCCCC
Q 001729 763 KRPACKFFYSLQGCRNGDSCIFSHDL 788 (1020)
Q Consensus 763 ~~~~C~~f~~~g~C~~g~~C~f~H~~ 788 (1020)
++.+|++|...|.|++|++|+|+|+.
T Consensus 2 k~~~C~~f~~~g~C~~G~~C~f~H~~ 27 (27)
T PF00642_consen 2 KTKLCRFFMRTGTCPFGDKCRFAHGE 27 (27)
T ss_dssp TSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred ccccChhhccCCccCCCCCcCccCCC
Confidence 57889999888999999999999973
No 164
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.70 E-value=1.8e-05 Score=77.05 Aligned_cols=116 Identities=20% Similarity=0.290 Sum_probs=61.1
Q ss_pred hhccEEEEecCCCCCCcCChhhhhhhc--------CCccccccCCceehhhhHHHHHhhccccccCcccceecccccccc
Q 001729 40 LENRVTLIVGETGCGKSSQVPQFLLAE--------NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLS 111 (1020)
Q Consensus 40 ~~~~~vII~apTGSGKTt~ip~~lle~--------~~~~IivtqPrrlaa~sva~rva~e~~~~lg~~Vgy~i~~~~~~~ 111 (1020)
.+++.++|.|++|+|||+.+-.++.+. ....+.+..|.......+...+...++.....
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------------- 68 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS------------- 68 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-------------
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-------------
Confidence 356789999999999999888877654 23334444444444555666666654432211
Q ss_pred ccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhccCCeEEEEeecc
Q 001729 112 ERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (1020)
Q Consensus 112 ~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmSAT 178 (1020)
-.|...+.+.+... +......+|||||+|.-. . +-.+..++.+.. ...+++|+..-.
T Consensus 69 ------~~~~~~l~~~~~~~-l~~~~~~~lviDe~~~l~-~-~~~l~~l~~l~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 69 ------RQTSDELRSLLIDA-LDRRRVVLLVIDEADHLF-S-DEFLEFLRSLLN-ESNIKVVLVGTP 125 (131)
T ss_dssp ------TS-HHHHHHHHHHH-HHHCTEEEEEEETTHHHH-T-HHHHHHHHHHTC-SCBEEEEEEESS
T ss_pred ------cCCHHHHHHHHHHH-HHhcCCeEEEEeChHhcC-C-HHHHHHHHHHHh-CCCCeEEEEECh
Confidence 12233333333221 111134799999999532 2 334444555544 667777766544
No 165
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=97.68 E-value=5.8e-06 Score=87.63 Aligned_cols=56 Identities=38% Similarity=0.953 Sum_probs=43.5
Q ss_pred CCCccceeeccccccCCCCCCCCcCcCC-------------CC------------------------CCccceec-----
Q 001729 735 GEAPLCVYFINGSCNRGTGCPFSHSLQA-------------KR------------------------PACKFFYS----- 772 (1020)
Q Consensus 735 ~~~~~C~~f~~G~C~~G~~C~f~H~~~~-------------~~------------------------~~C~~f~~----- 772 (1020)
.+..+|-||..|.|.+|+.|.|+|+... +. .+|+||.-
T Consensus 90 PKSvvCafFk~g~C~KG~kCKFsHdl~~~~k~eK~dly~d~rdemWD~~kl~~vv~~K~~k~k~~tdiVCKfFLeAvE~~ 169 (343)
T KOG1763|consen 90 PKSVVCAFFKQGTCTKGDKCKFSHDLAVERKKEKIDLYPDTRDEMWDEEKLEEVVLKKHGKPKPTTDIVCKFFLEAVENG 169 (343)
T ss_pred chHHHHHHHhccCCCCCCcccccchHHHhhhccchhccccchhhhhhHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcC
Confidence 3667799999999999999999999811 01 17999942
Q ss_pred -cC---CCCCCC-CCccCCCCCC
Q 001729 773 -LQ---GCRNGD-SCIFSHDLGQ 790 (1020)
Q Consensus 773 -~g---~C~~g~-~C~f~H~~~~ 790 (1020)
.| .|.+|. .|.|.|.+..
T Consensus 170 kYGWfW~CPnGg~~C~YrHaLP~ 192 (343)
T KOG1763|consen 170 KYGWFWECPNGGDKCIYRHALPE 192 (343)
T ss_pred CccceeECCCCCCeeeeeecCCc
Confidence 23 499975 9999999844
No 166
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=97.61 E-value=7.5e-05 Score=81.24 Aligned_cols=55 Identities=31% Similarity=0.738 Sum_probs=49.5
Q ss_pred CCCCccceeeccccccCCCCCCCCcCcCCC---CCCccceeccCCCCCCCCCccCCCC
Q 001729 734 PGEAPLCVYFINGSCNRGTGCPFSHSLQAK---RPACKFFYSLQGCRNGDSCIFSHDL 788 (1020)
Q Consensus 734 ~~~~~~C~~f~~G~C~~G~~C~f~H~~~~~---~~~C~~f~~~g~C~~g~~C~f~H~~ 788 (1020)
.....+|++|..|.|+.|..|.|+|..+.. .++|++|...|.|..|..|.|.|..
T Consensus 101 ~~s~V~c~~~~~g~c~s~~~c~~lh~~d~~~s~~~~c~~Fs~~G~cs~g~~c~~~h~d 158 (285)
T COG5084 101 LSSSVVCKFFLRGLCKSGFSCEFLHEYDLRSSQGPPCRSFSLKGSCSSGPSCGYSHID 158 (285)
T ss_pred ccCCcccchhccccCcCCCccccccCCCcccccCCCcccccccceeccCCCCCccccC
Confidence 456678999999999999999999997533 5789999999999999999999988
No 167
>smart00356 ZnF_C3H1 zinc finger.
Probab=97.57 E-value=4.1e-05 Score=53.33 Aligned_cols=24 Identities=38% Similarity=0.970 Sum_probs=17.2
Q ss_pred CCccceeeccccccCCCCCCCCcC
Q 001729 736 EAPLCVYFINGSCNRGTGCPFSHS 759 (1020)
Q Consensus 736 ~~~~C~~f~~G~C~~G~~C~f~H~ 759 (1020)
+..+|++|.+|.|.+|++|+|+|+
T Consensus 3 k~~~C~~~~~g~C~~g~~C~~~H~ 26 (27)
T smart00356 3 KTELCKFFKRGYCPYGDRCKFAHP 26 (27)
T ss_pred CCCcCcCccCCCCCCCCCcCCCCc
Confidence 445677777777777777777775
No 168
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.52 E-value=3.7e-05 Score=80.99 Aligned_cols=60 Identities=18% Similarity=0.325 Sum_probs=42.5
Q ss_pred hhhhHHHHHHHHhhc--cEEEEecCCCCCCcCChhhhh--hhcCCccccccCCceehhhhHHHH
Q 001729 28 VMSLREKIVEKVLEN--RVTLIVGETGCGKSSQVPQFL--LAENMEPILCTQPRRFAVVAVAKM 87 (1020)
Q Consensus 28 i~~~Q~eil~~i~~~--~~vII~apTGSGKTt~ip~~l--le~~~~~IivtqPrrlaa~sva~r 87 (1020)
+.+-|.+++..+..+ +.++|.|+.|+|||+.+-... ++....+|+++.|+.-++..+.+.
T Consensus 2 L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 2 LNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHh
Confidence 467799999999644 588999999999997654432 223335788888988887777665
No 169
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.45 E-value=0.00018 Score=80.44 Aligned_cols=36 Identities=14% Similarity=0.275 Sum_probs=28.3
Q ss_pred hhhHHH----HHHHHhhccEEEEecCCCCCCcCChhhhhh
Q 001729 29 MSLREK----IVEKVLENRVTLIVGETGCGKSSQVPQFLL 64 (1020)
Q Consensus 29 ~~~Q~e----il~~i~~~~~vII~apTGSGKTt~ip~~ll 64 (1020)
++.|.+ +.+.+.+++.+++.+|||+|||..+...++
T Consensus 10 r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al 49 (289)
T smart00489 10 YPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTL 49 (289)
T ss_pred CHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHH
Confidence 888988 445556789999999999999966655543
No 170
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.45 E-value=0.00018 Score=80.44 Aligned_cols=36 Identities=14% Similarity=0.275 Sum_probs=28.3
Q ss_pred hhhHHH----HHHHHhhccEEEEecCCCCCCcCChhhhhh
Q 001729 29 MSLREK----IVEKVLENRVTLIVGETGCGKSSQVPQFLL 64 (1020)
Q Consensus 29 ~~~Q~e----il~~i~~~~~vII~apTGSGKTt~ip~~ll 64 (1020)
++.|.+ +.+.+.+++.+++.+|||+|||..+...++
T Consensus 10 r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al 49 (289)
T smart00488 10 YPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTL 49 (289)
T ss_pred CHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHH
Confidence 888988 445556789999999999999966655543
No 171
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.44 E-value=0.00031 Score=87.64 Aligned_cols=116 Identities=20% Similarity=0.219 Sum_probs=74.7
Q ss_pred HHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc-eEEEEecc
Q 001729 258 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNI 336 (1020)
Q Consensus 258 ~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVLVATni 336 (1020)
+..+.+-+..++.. +.+|||-+.+.+..+.+++.|... ++.-.+|++.....|...|-++ +.. .|-||||+
T Consensus 614 ~~Aii~ei~~~~~~----GrPVLVGT~SVe~SE~lS~~L~~~--gI~H~VLNAK~h~~EAeIVA~A--G~~GaVTIATNM 685 (1112)
T PRK12901 614 YNAVIEEITELSEA----GRPVLVGTTSVEISELLSRMLKMR--KIPHNVLNAKLHQKEAEIVAEA--GQPGTVTIATNM 685 (1112)
T ss_pred HHHHHHHHHHHHHC----CCCEEEEeCcHHHHHHHHHHHHHc--CCcHHHhhccchhhHHHHHHhc--CCCCcEEEeccC
Confidence 44455555555543 469999999999999999999843 3443445554333333333222 223 89999999
Q ss_pred cccccccc--------ceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc-cCCeeEEeec
Q 001729 337 AESSVTIP--------KVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVT 399 (1020)
Q Consensus 337 ae~GIdIp--------~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c~rLys 399 (1020)
|++|-||. +=-+||-+.+. -|+.--.|-.|||||. .||..-.+.|
T Consensus 686 AGRGTDIkLg~~V~e~GGL~VIgTerh------------------eSrRID~QLrGRaGRQGDPGsS~f~lS 739 (1112)
T PRK12901 686 AGRGTDIKLSPEVKAAGGLAIIGTERH------------------ESRRVDRQLRGRAGRQGDPGSSQFYVS 739 (1112)
T ss_pred cCCCcCcccchhhHHcCCCEEEEccCC------------------CcHHHHHHHhcccccCCCCCcceEEEE
Confidence 99999986 22344432221 1334448999999999 5787655554
No 172
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=97.42 E-value=7.8e-05 Score=75.88 Aligned_cols=56 Identities=38% Similarity=0.898 Sum_probs=25.6
Q ss_pred CccCCCCCccceeeccccccCCCCCCCCcCcCCCC-CCccceeccCCCCCCCCCccCCC
Q 001729 730 GSETPGEAPLCVYFINGSCNRGTGCPFSHSLQAKR-PACKFFYSLQGCRNGDSCIFSHD 787 (1020)
Q Consensus 730 ~~~~~~~~~~C~~f~~G~C~~G~~C~f~H~~~~~~-~~C~~f~~~g~C~~g~~C~f~H~ 787 (1020)
+...|....+|.-|++|+|.+.+.|..+|..++++ +.|+|| ..|.|.+.+ |+|.|-
T Consensus 226 fvheptrkticpkflngrcnkaedcnlsheldprripacryf-llgkcnnpn-cryvhi 282 (377)
T KOG1492|consen 226 FVHEPTRKTICPKFLNGRCNKAEDCNLSHELDPRRIPACRYF-LLGKCNNPN-CRYVHI 282 (377)
T ss_pred eeccccccccChHHhcCccCchhcCCcccccCccccchhhhh-hhccCCCCC-ceEEEE
Confidence 33334444445444555555554555555443322 335555 445554443 555543
No 173
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=97.42 E-value=6.5e-05 Score=76.42 Aligned_cols=57 Identities=32% Similarity=0.788 Sum_probs=49.1
Q ss_pred Cccceeec-cccccCCCCCCCCcCcCCCCCCccceeccCCCCCCCCCccCCCCCCCCCCC
Q 001729 737 APLCVYFI-NGSCNRGTGCPFSHSLQAKRPACKFFYSLQGCRNGDSCIFSHDLGQPVLPS 795 (1020)
Q Consensus 737 ~~~C~~f~-~G~C~~G~~C~f~H~~~~~~~~C~~f~~~g~C~~g~~C~f~H~~~~~~~~~ 795 (1020)
...|+||. +|-|.+|..|+|.|.+ .+..+|.-| ..|.|.+.+.|-++|++++.+-+.
T Consensus 206 avycryynangicgkgaacrfvhep-trkticpkf-lngrcnkaedcnlsheldprripa 263 (377)
T KOG1492|consen 206 AVYCRYYNANGICGKGAACRFVHEP-TRKTICPKF-LNGRCNKAEDCNLSHELDPRRIPA 263 (377)
T ss_pred eeEEEEecCCCcccCCceeeeeccc-cccccChHH-hcCccCchhcCCcccccCccccch
Confidence 45699999 6999999999999985 455689999 999999999999999998876544
No 174
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.42 E-value=0.00021 Score=75.22 Aligned_cols=51 Identities=20% Similarity=0.326 Sum_probs=35.0
Q ss_pred chhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhh----hhcCCccccccCCc
Q 001729 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFL----LAENMEPILCTQPR 77 (1020)
Q Consensus 27 Pi~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~l----le~~~~~IivtqPr 77 (1020)
|.+..|..+++++.+++.+++.||.|||||+...... .+....+|+++-|.
T Consensus 4 p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~ 58 (205)
T PF02562_consen 4 PKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPP 58 (205)
T ss_dssp --SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S
T ss_pred CCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 7788999999999999999999999999995444333 33344688888664
No 175
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.39 E-value=8.9e-05 Score=78.04 Aligned_cols=124 Identities=19% Similarity=0.265 Sum_probs=76.4
Q ss_pred cEEEEecCCCCCCcCChhhhhhh---cCCc-cccccCCceehhhhHHHHHhhccccccCcccceeccccccccccceEEe
Q 001729 43 RVTLIVGETGCGKSSQVPQFLLA---ENME-PILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVF 118 (1020)
Q Consensus 43 ~~vII~apTGSGKTt~ip~~lle---~~~~-~IivtqPrrlaa~sva~rva~e~~~~lg~~Vgy~i~~~~~~~~~t~Iiv 118 (1020)
++++++||||+||||.+..+... .+.+ .++.+-+-|+.|...-+.+++.++.++-. .+...
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~-----~~~~~---------- 66 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYV-----ARTES---------- 66 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEE-----SSTTS----------
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccch-----hhcch----------
Confidence 57899999999999888776542 2322 56777888999999888888877754311 00000
Q ss_pred eechhhh-HHHHHhccccceeEEEEeecccccccccceeehhhhhHhhc-cCCeEEEEeecccchhhhh
Q 001729 119 KTAGVLL-DEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLK-KNDLRVVLMSATADITKYR 185 (1020)
Q Consensus 119 ~Tpg~Ll-~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~-~~~lkiIlmSATld~~~~~ 185 (1020)
.|..++ +.+... ...++++|+||-+- |+....-.+.-++.+... .++--+++||||...+.+.
T Consensus 67 -~~~~~~~~~l~~~--~~~~~D~vlIDT~G-r~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~ 131 (196)
T PF00448_consen 67 -DPAEIAREALEKF--RKKGYDLVLIDTAG-RSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLE 131 (196)
T ss_dssp -CHHHHHHHHHHHH--HHTTSSEEEEEE-S-SSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHH
T ss_pred -hhHHHHHHHHHHH--hhcCCCEEEEecCC-cchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHH
Confidence 122222 223221 11268999999998 665444444444444433 5677889999998555433
No 176
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.33 E-value=0.00042 Score=80.18 Aligned_cols=126 Identities=17% Similarity=0.299 Sum_probs=76.7
Q ss_pred ccEEEEecCCCCCCcCChhhhhhhc-------CCc-cccccCCceehhhhHHHHHhhccccccCcccceecccccccccc
Q 001729 42 NRVTLIVGETGCGKSSQVPQFLLAE-------NME-PILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSER 113 (1020)
Q Consensus 42 ~~~vII~apTGSGKTt~ip~~lle~-------~~~-~IivtqPrrlaa~sva~rva~e~~~~lg~~Vgy~i~~~~~~~~~ 113 (1020)
.++++++||||+||||.+..+.... +.. .++-+-+-|.+|...-+.+++.++.++.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~---------------- 237 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK---------------- 237 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceE----------------
Confidence 3689999999999998877665321 222 3445556677777666666665554321
Q ss_pred ceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhc-cCC-eEEEEeecccchhhhhHHHhhc
Q 001729 114 SKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLK-KND-LRVVLMSATADITKYRDYFRDL 191 (1020)
Q Consensus 114 t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~-~~~-lkiIlmSATld~~~~~~~f~~~ 191 (1020)
...++.-+...+.. +.++++||||++. |+......+.-++.++.. .++ -.++++|||...+.+.+.|...
T Consensus 238 ---~~~~~~~l~~~L~~----~~~~DlVLIDTaG-r~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~ 309 (388)
T PRK12723 238 ---AIESFKDLKEEITQ----SKDFDLVLVDTIG-KSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQF 309 (388)
T ss_pred ---eeCcHHHHHHHHHH----hCCCCEEEEcCCC-CCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHh
Confidence 01123334333332 2379999999999 665322223334444432 333 4789999999877777777654
No 177
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=97.32 E-value=0.00028 Score=86.47 Aligned_cols=108 Identities=17% Similarity=0.172 Sum_probs=82.5
Q ss_pred cccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhc-c---ceEEEEeccccccccccceeEEee
Q 001729 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKS-H---RKVILATNIAESSVTIPKVAYVID 351 (1020)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~-g---rkVLVATniae~GIdIp~V~~VId 351 (1020)
+++||.|+.-..-...+-.+|. ..++.-.-+.|....++|-..++.|.. + ...|++|-....|+|+-..+.||-
T Consensus 726 gHRVLlF~qMTrlmdimEdyL~--~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtvii 803 (1157)
T KOG0386|consen 726 GHRVLLFSQMTRLMDILEDYLQ--IREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVII 803 (1157)
T ss_pred CcchhhHHHHHHHHHHHHHHHh--hhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEE
Confidence 5789999987776666767776 445777888999999999999998853 2 289999999999999998888886
Q ss_pred cccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc---cCCeeEEeechhhc
Q 001729 352 SCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT---CDGQVYRLVTKSFF 403 (1020)
Q Consensus 352 ~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~---~~G~c~rLys~~~~ 403 (1020)
||...+.... .|+.-||-|. ..-.++||.+-..+
T Consensus 804 --------fdsdwnp~~d----------~qaqdrahrigq~~evRv~rl~tv~sv 840 (1157)
T KOG0386|consen 804 --------FDSDWNPHQD----------LQAQDRAHRIGQKKEVRVLRLITVNSV 840 (1157)
T ss_pred --------ecCCCCchhH----------HHHHHHHHHhhchhheeeeeeehhhHH
Confidence 7776554433 5666666555 67788999886443
No 178
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=97.30 E-value=7e-05 Score=81.51 Aligned_cols=53 Identities=25% Similarity=0.578 Sum_probs=44.2
Q ss_pred CCccceeeccccccCCCC-CCCCcCcCC------CCCCccceeccCCCCCCCCCccCCCCCC
Q 001729 736 EAPLCVYFINGSCNRGTG-CPFSHSLQA------KRPACKFFYSLQGCRNGDSCIFSHDLGQ 790 (1020)
Q Consensus 736 ~~~~C~~f~~G~C~~G~~-C~f~H~~~~------~~~~C~~f~~~g~C~~g~~C~f~H~~~~ 790 (1020)
.-++||-|++|.|.+|+. |+|.|+... +-.-|--| ++|.|..-+ |+|.|....
T Consensus 36 ~~eVCReF~rn~C~R~d~~CkfaHP~~~~~V~~g~v~aC~Ds-~kgrCsR~n-CkylHpp~h 95 (331)
T KOG2494|consen 36 TLEVCREFLRNTCSRGDRECKFAHPPKNCQVSNGRVIACFDS-QKGRCSREN-CKYLHPPQH 95 (331)
T ss_pred HHHHHHHHHhccccCCCccccccCCCCCCCccCCeEEEEecc-ccCccCccc-ceecCCChh
Confidence 668899999999999999 999998632 12249988 999999887 999998743
No 179
>PF13245 AAA_19: Part of AAA domain
Probab=97.20 E-value=0.00019 Score=63.42 Aligned_cols=51 Identities=16% Similarity=0.239 Sum_probs=40.3
Q ss_pred HHhhccEEEEecCCCCCCcCChhhhhhhcC------CccccccCCceehhhhHHHHH
Q 001729 38 KVLENRVTLIVGETGCGKSSQVPQFLLAEN------MEPILCTQPRRFAVVAVAKMV 88 (1020)
Q Consensus 38 ~i~~~~~vII~apTGSGKTt~ip~~lle~~------~~~IivtqPrrlaa~sva~rv 88 (1020)
++..++.++|.||.|||||+.+...+.+.. .++|+++.|++.++..+.+++
T Consensus 6 al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 6 ALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 455577888899999999976666554332 457999999999999999887
No 180
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.19 E-value=0.00024 Score=86.86 Aligned_cols=136 Identities=20% Similarity=0.262 Sum_probs=79.4
Q ss_pred hhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhh---hcC---CccccccCCceehhhhHHHHHhhccccccCcccce
Q 001729 29 MSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLL---AEN---MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (1020)
Q Consensus 29 ~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~ll---e~~---~~~IivtqPrrlaa~sva~rva~e~~~~lg~~Vgy 102 (1020)
.+.|.+++.....++.++|.|++|+||||.+..++. +.. ...|+++.|+.-||..+.+.+..... .++.
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~-~~~~---- 228 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALR-QLPL---- 228 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhh-cccc----
Confidence 368999999999999999999999999987765543 211 23688899999888888776654221 1110
Q ss_pred eccccccccccceEEeeechhhhHH------HHHhccccceeEEEEeecccccccccceeehhhhhHhhccCCeEEEEee
Q 001729 103 HIGHSKHLSERSKIVFKTAGVLLDE------MRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (1020)
Q Consensus 103 ~i~~~~~~~~~t~Iiv~Tpg~Ll~~------l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmS 176 (1020)
.............|--.|+.. +.....+...+++|||||+- +++......+++. ..++.|+|++-
T Consensus 229 ----~~~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaS--Mvd~~lm~~ll~a---l~~~~rlIlvG 299 (615)
T PRK10875 229 ----TDEQKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEAS--MVDLPMMARLIDA---LPPHARVIFLG 299 (615)
T ss_pred ----chhhhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHh--cccHHHHHHHHHh---cccCCEEEEec
Confidence 000000000011222222211 11111122367999999998 4555444444443 35677888875
Q ss_pred cc
Q 001729 177 AT 178 (1020)
Q Consensus 177 AT 178 (1020)
=.
T Consensus 300 D~ 301 (615)
T PRK10875 300 DR 301 (615)
T ss_pred ch
Confidence 33
No 181
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.19 E-value=0.0003 Score=85.83 Aligned_cols=133 Identities=23% Similarity=0.300 Sum_probs=78.4
Q ss_pred hhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhh---hcC----CccccccCCceehhhhHHHHHhhccccccCcccce
Q 001729 30 SLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLL---AEN----MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (1020)
Q Consensus 30 ~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~ll---e~~----~~~IivtqPrrlaa~sva~rva~e~~~~lg~~Vgy 102 (1020)
+.|.+++.....++.++|.|+.|+||||.+..++. +.. ..+|+++.|+--||..+.+.+..... .++..
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~-~l~~~--- 223 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVK-NLAAA--- 223 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhc-ccccc---
Confidence 67888999999999999999999999987665542 221 13689999998888877776654321 11100
Q ss_pred eccccccccccceEEeeechhhhHHH------HHhccccceeEEEEeecccccccccceeehhhhhHhhccCCeEEEEee
Q 001729 103 HIGHSKHLSERSKIVFKTAGVLLDEM------RDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (1020)
Q Consensus 103 ~i~~~~~~~~~t~Iiv~Tpg~Ll~~l------~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmS 176 (1020)
........+...|-..|+... ....-+...+++|||||+= +++...+..+++. .++..|+|++-
T Consensus 224 -----~~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaS--Mvd~~l~~~ll~a---l~~~~rlIlvG 293 (586)
T TIGR01447 224 -----EALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEAS--MVDLPLMAKLLKA---LPPNTKLILLG 293 (586)
T ss_pred -----hhhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccc--cCCHHHHHHHHHh---cCCCCEEEEEC
Confidence 000000011123333333211 1111122378999999997 5555444444432 35677888764
No 182
>smart00356 ZnF_C3H1 zinc finger.
Probab=97.11 E-value=0.00033 Score=48.71 Aligned_cols=25 Identities=48% Similarity=0.933 Sum_probs=22.3
Q ss_pred CCCCccceeccCCCCCCCCCccCCCC
Q 001729 763 KRPACKFFYSLQGCRNGDSCIFSHDL 788 (1020)
Q Consensus 763 ~~~~C~~f~~~g~C~~g~~C~f~H~~ 788 (1020)
+..+|++| ..|.|.+|++|+|+|+.
T Consensus 3 k~~~C~~~-~~g~C~~g~~C~~~H~~ 27 (27)
T smart00356 3 KTELCKFF-KRGYCPYGDRCKFAHPL 27 (27)
T ss_pred CCCcCcCc-cCCCCCCCCCcCCCCcC
Confidence 45689999 99999999999999973
No 183
>PRK10536 hypothetical protein; Provisional
Probab=97.08 E-value=0.00046 Score=74.78 Aligned_cols=53 Identities=19% Similarity=0.359 Sum_probs=42.7
Q ss_pred cchhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhh----hcCCccccccCCce
Q 001729 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLL----AENMEPILCTQPRR 78 (1020)
Q Consensus 26 LPi~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~ll----e~~~~~IivtqPrr 78 (1020)
-|....|...+.++.++..+++.||+|||||+....+.+ +....+|+++-|.-
T Consensus 58 ~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v 114 (262)
T PRK10536 58 LARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVL 114 (262)
T ss_pred cCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCC
Confidence 678889999999999999999999999999976655544 33356788887754
No 184
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.05 E-value=0.0011 Score=75.68 Aligned_cols=126 Identities=21% Similarity=0.276 Sum_probs=88.8
Q ss_pred ccEEEEecCCCCCCcCChhhhhhhc----CCc--cccccCCceehhhhHHHHHhhccccccCcccceeccccccccccce
Q 001729 42 NRVTLIVGETGCGKSSQVPQFLLAE----NME--PILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSK 115 (1020)
Q Consensus 42 ~~~vII~apTGSGKTt~ip~~lle~----~~~--~IivtqPrrlaa~sva~rva~e~~~~lg~~Vgy~i~~~~~~~~~t~ 115 (1020)
++++.++||||.||||.+..+.... +.. .||=+-.-|+.|...-+..++.++.++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~------------------- 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPL------------------- 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCce-------------------
Confidence 6899999999999998877664432 222 466667778999888888888877653
Q ss_pred EEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhccCC-eEEEEeecccchhhhhHHHhhc
Q 001729 116 IVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKND-LRVVLMSATADITKYRDYFRDL 191 (1020)
Q Consensus 116 Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~-lkiIlmSATld~~~~~~~f~~~ 191 (1020)
.++-+|.-|...+. .+.++++|.||=+- |+........-++.+.....+ ---+.+|||...+++.+.+...
T Consensus 264 ~vv~~~~el~~ai~----~l~~~d~ILVDTaG-rs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f 335 (407)
T COG1419 264 EVVYSPKELAEAIE----ALRDCDVILVDTAG-RSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQF 335 (407)
T ss_pred EEecCHHHHHHHHH----HhhcCCEEEEeCCC-CCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHh
Confidence 23344555555554 24488999999998 776655555566666655434 4567899999877777777654
No 185
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.04 E-value=0.0007 Score=79.61 Aligned_cols=62 Identities=19% Similarity=0.305 Sum_probs=48.9
Q ss_pred hhhhHHHHHHHHhhc-cEEEEecCCCCCCcCChhhhhhhcC--CccccccCCceehhhhHHHHHh
Q 001729 28 VMSLREKIVEKVLEN-RVTLIVGETGCGKSSQVPQFLLAEN--MEPILCTQPRRFAVVAVAKMVA 89 (1020)
Q Consensus 28 i~~~Q~eil~~i~~~-~~vII~apTGSGKTt~ip~~lle~~--~~~IivtqPrrlaa~sva~rva 89 (1020)
+.+.|.+++....++ ...+|.||+|+|||+.+..++...- ..+|+|+.|+.++...+.+|+.
T Consensus 186 ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 186 LNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcCCeEEEEcCchHHHHHHHHHhc
Confidence 556789999988777 5689999999999977766655432 2589999999999888877643
No 186
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=97.02 E-value=0.00016 Score=74.40 Aligned_cols=55 Identities=33% Similarity=0.826 Sum_probs=43.0
Q ss_pred CCCCccceeeccccccCCCCCCCCcCcCC-----------------------------CCCCccceecc---C------C
Q 001729 734 PGEAPLCVYFINGSCNRGTGCPFSHSLQA-----------------------------KRPACKFFYSL---Q------G 775 (1020)
Q Consensus 734 ~~~~~~C~~f~~G~C~~G~~C~f~H~~~~-----------------------------~~~~C~~f~~~---g------~ 775 (1020)
..+..+|-.|..|.|.+|+.|.|+|+... ...+|+||... | .
T Consensus 82 dpK~~vcalF~~~~c~kg~~ckF~h~~ee~r~~eK~DLYsDvRd~~ed~pl~krP~intd~VCkffieA~e~GkYgw~W~ 161 (299)
T COG5252 82 DPKTVVCALFLNKTCAKGDACKFAHGKEEARKTEKPDLYSDVRDKEEDVPLGKRPWINTDRVCKFFIEAMESGKYGWGWT 161 (299)
T ss_pred CchhHHHHHhccCccccCchhhhhcchHHHhhhcccchhhhhhhhhccCCcccCCCCChhHHHHHHHHHHhcCCccceee
Confidence 34677899999999999999999999510 01269999431 2 4
Q ss_pred CCCC-CCCccCCCC
Q 001729 776 CRNG-DSCIFSHDL 788 (1020)
Q Consensus 776 C~~g-~~C~f~H~~ 788 (1020)
|.+| ++|.|.|.+
T Consensus 162 CPng~~~C~y~H~L 175 (299)
T COG5252 162 CPNGNMRCSYIHKL 175 (299)
T ss_pred CCCCCceeeeeecc
Confidence 9997 689999998
No 187
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.97 E-value=0.00058 Score=85.62 Aligned_cols=128 Identities=13% Similarity=0.216 Sum_probs=74.9
Q ss_pred CcchhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhh--hhcCC--ccccccCCceehhhhHHHHHhhccccccCccc
Q 001729 25 SLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFL--LAENM--EPILCTQPRRFAVVAVAKMVAKGRNCELGGEV 100 (1020)
Q Consensus 25 ~LPi~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~l--le~~~--~~IivtqPrrlaa~sva~rva~e~~~~lg~~V 100 (1020)
...+.+-|.+++..+..++.++|.|+.|+||||.+-.++ ++... ..|+++.|+--+|..+. +..|... .++
T Consensus 321 ~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~----e~~g~~a-~Ti 395 (720)
T TIGR01448 321 RKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLG----EVTGLTA-STI 395 (720)
T ss_pred CCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHH----HhcCCcc-ccH
Confidence 466789999999999999999999999999998664432 22222 46788888877766443 3222110 000
Q ss_pred ceeccccccccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhccCCeEEEEeecc
Q 001729 101 GYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (1020)
Q Consensus 101 gy~i~~~~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmSAT 178 (1020)
. ++-.. .++.....-.. .....++|||||++ +++...+..+++. ...+.|+|++-=+
T Consensus 396 h---~lL~~----------~~~~~~~~~~~---~~~~~~llIvDEaS--Mvd~~~~~~Ll~~---~~~~~rlilvGD~ 452 (720)
T TIGR01448 396 H---RLLGY----------GPDTFRHNHLE---DPIDCDLLIVDESS--MMDTWLALSLLAA---LPDHARLLLVGDT 452 (720)
T ss_pred H---HHhhc----------cCCccchhhhh---ccccCCEEEEeccc--cCCHHHHHHHHHh---CCCCCEEEEECcc
Confidence 0 00000 00000000001 12368999999999 4555444444442 3456788887544
No 188
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.94 E-value=0.00095 Score=76.65 Aligned_cols=121 Identities=17% Similarity=0.169 Sum_probs=71.4
Q ss_pred hccEEEEecCCCCCCcCChhhhhhh----cCCccccc--cCCceehhhhHHHHHhhccccccCcccceeccccccccccc
Q 001729 41 ENRVTLIVGETGCGKSSQVPQFLLA----ENMEPILC--TQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERS 114 (1020)
Q Consensus 41 ~~~~vII~apTGSGKTt~ip~~lle----~~~~~Iiv--tqPrrlaa~sva~rva~e~~~~lg~~Vgy~i~~~~~~~~~t 114 (1020)
++.+++++||||+||||.+..+... .+..+|.+ +-+-|+.+....+.+++.++..+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~------------------ 197 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPV------------------ 197 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCce------------------
Confidence 4679999999999999887777543 23233322 23345666666666665544321
Q ss_pred eEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhc-cCCeEEEEeecccchhhhh
Q 001729 115 KIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLK-KNDLRVVLMSATADITKYR 185 (1020)
Q Consensus 115 ~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~-~~~lkiIlmSATld~~~~~ 185 (1020)
..+.+++-+...+.. +.++++|+||++= |....+.+...+..+... .+.-.++++|||...+.+.
T Consensus 198 -~~~~~~~~l~~~l~~----l~~~DlVLIDTaG-~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~ 263 (374)
T PRK14722 198 -HAVKDGGDLQLALAE----LRNKHMVLIDTIG-MSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLN 263 (374)
T ss_pred -EecCCcccHHHHHHH----hcCCCEEEEcCCC-CCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHH
Confidence 112233334333331 2377999999997 554444455555544322 3446789999998555443
No 189
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.93 E-value=0.0008 Score=77.59 Aligned_cols=92 Identities=23% Similarity=0.272 Sum_probs=50.8
Q ss_pred cEEEEecCCCCCCcCChhhhhhhc----CCccccccCCceehhhhHHHHHhhccccccCcccceeccccccccccceEEe
Q 001729 43 RVTLIVGETGCGKSSQVPQFLLAE----NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVF 118 (1020)
Q Consensus 43 ~~vII~apTGSGKTt~ip~~lle~----~~~~IivtqPrrlaa~sva~rva~e~~~~lg~~Vgy~i~~~~~~~~~t~Iiv 118 (1020)
++++|.|..|||||..+..++.+. ....++++.+...+...+.+.++.... .......+
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~-----------------~~~~~~~~ 64 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYN-----------------PKLKKSDF 64 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhcc-----------------cchhhhhh
Confidence 578999999999997666665543 223445555555555555555544320 00111222
Q ss_pred eechhhhHHHHHhccccceeEEEEeecccccccc
Q 001729 119 KTAGVLLDEMRDRGLNALKYKVIILDEVHERSVE 152 (1020)
Q Consensus 119 ~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~ 152 (1020)
..+..+...+.........+++||||||| |...
T Consensus 65 ~~~~~~i~~~~~~~~~~~~~DviivDEAq-rl~~ 97 (352)
T PF09848_consen 65 RKPTSFINNYSESDKEKNKYDVIIVDEAQ-RLRT 97 (352)
T ss_pred hhhHHHHhhcccccccCCcCCEEEEehhH-hhhh
Confidence 23333332222111123489999999999 5544
No 190
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=96.92 E-value=0.0064 Score=76.13 Aligned_cols=135 Identities=16% Similarity=0.078 Sum_probs=81.8
Q ss_pred hHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc--eEEEE
Q 001729 256 EVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR--KVILA 333 (1020)
Q Consensus 256 ~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr--kVLVA 333 (1020)
.....+...+..+.... +|++|||+|+.+..+.+.+.+...... .....+|..+.+ .+++.|+... -++|+
T Consensus 462 ~~~~~~~~~i~~~~~~~---~~~~lvlF~Sy~~l~~~~~~~~~~~~~-~~v~~q~~~~~~---~~l~~f~~~~~~~~lv~ 534 (654)
T COG1199 462 ELLAKLAAYLREILKAS---PGGVLVLFPSYEYLKRVAERLKDERST-LPVLTQGEDERE---ELLEKFKASGEGLILVG 534 (654)
T ss_pred HHHHHHHHHHHHHHhhc---CCCEEEEeccHHHHHHHHHHHhhcCcc-ceeeecCCCcHH---HHHHHHHHhcCCeEEEe
Confidence 33344444454554444 368999999999999999998743322 233445554444 5566665443 79999
Q ss_pred eccccccccccce--eEEeecccceeee----------eecccc--ccceeeEEeehhHHHHhcCCCCccc--CCeeEEe
Q 001729 334 TNIAESSVTIPKV--AYVIDSCRSLQVF----------WDVNRK--IDSAELVWVSQSQAEQRRGRTGRTC--DGQVYRL 397 (1020)
Q Consensus 334 Tniae~GIdIp~V--~~VId~G~~k~~~----------yd~~~~--~~~l~~~~iSkas~~QR~GRAGR~~--~G~c~rL 397 (1020)
|..+.+|||+|+= +.||-.|+.-..- |....+ ...+...+..--...|-+||.=|.. .|.++.|
T Consensus 535 ~gsf~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivll 614 (654)
T COG1199 535 GGSFWEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLL 614 (654)
T ss_pred eccccCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEe
Confidence 9999999999954 6666555432211 111111 1112222334456789999999983 4666655
No 191
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=96.89 E-value=0.0065 Score=76.19 Aligned_cols=132 Identities=14% Similarity=0.076 Sum_probs=77.5
Q ss_pred HHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhh----ccc-eEE
Q 001729 257 VHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICK----SHR-KVI 331 (1020)
Q Consensus 257 ~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~----~gr-kVL 331 (1020)
..+.+.+.+..+.. . .|.+|||.++.+..+.++..|.... +..+ ..++.. .+..+++.|+ .+. .||
T Consensus 519 ~~~~~~~~i~~l~~-~---~gg~LVlFtSy~~l~~v~~~l~~~~-~~~l-l~Q~~~---~~~~ll~~f~~~~~~~~~~VL 589 (697)
T PRK11747 519 HTAEMAEFLPELLE-K---HKGSLVLFASRRQMQKVADLLPRDL-RLML-LVQGDQ---PRQRLLEKHKKRVDEGEGSVL 589 (697)
T ss_pred HHHHHHHHHHHHHh-c---CCCEEEEeCcHHHHHHHHHHHHHhc-CCcE-EEeCCc---hHHHHHHHHHHHhccCCCeEE
Confidence 34444455555544 2 2468999999999999998886321 2222 335542 3455665565 344 899
Q ss_pred EEeccccccccccc--eeEEeecccceeeeeeccc----------cccceee--EEeehhHHHHhcCCCCcc--cCCeeE
Q 001729 332 LATNIAESSVTIPK--VAYVIDSCRSLQVFWDVNR----------KIDSAEL--VWVSQSQAEQRRGRTGRT--CDGQVY 395 (1020)
Q Consensus 332 VATniae~GIdIp~--V~~VId~G~~k~~~yd~~~----------~~~~l~~--~~iSkas~~QR~GRAGR~--~~G~c~ 395 (1020)
++|....+|||+|+ .+.||-.|+.-..--|+.. +-+.+.. .|-.--.+.|-+||.=|. ..|..+
T Consensus 590 ~g~~sf~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ 669 (697)
T PRK11747 590 FGLQSFAEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVT 669 (697)
T ss_pred EEeccccccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEE
Confidence 99999999999996 7888876654211101100 0011100 011223468999999887 346655
Q ss_pred Ee
Q 001729 396 RL 397 (1020)
Q Consensus 396 rL 397 (1020)
.|
T Consensus 670 il 671 (697)
T PRK11747 670 IL 671 (697)
T ss_pred EE
Confidence 44
No 192
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=96.84 E-value=0.0013 Score=76.35 Aligned_cols=57 Identities=28% Similarity=0.575 Sum_probs=47.9
Q ss_pred ccCCCCCccceeeccccccCCCCCCCCcCc--------CCCCCCccceeccCCCCCCCCCccCCCCCCC
Q 001729 731 SETPGEAPLCVYFINGSCNRGTGCPFSHSL--------QAKRPACKFFYSLQGCRNGDSCIFSHDLGQP 791 (1020)
Q Consensus 731 ~~~~~~~~~C~~f~~G~C~~G~~C~f~H~~--------~~~~~~C~~f~~~g~C~~g~~C~f~H~~~~~ 791 (1020)
.+-.+.-++|--|.+|.|.+||+|.|.|.. ..++..||-- |+|.. .-|-|.|.....
T Consensus 230 RkyhYs~tpCPefrkG~C~rGD~CEyaHgvfEcwLHPa~YRT~~CkDg---~~C~R-rvCfFAH~~eqL 294 (528)
T KOG1595|consen 230 RKYHYSSTPCPEFRKGSCERGDSCEYAHGVFECWLHPARYRTRKCKDG---GYCPR-RVCFFAHSPEQL 294 (528)
T ss_pred ccccccCccCcccccCCCCCCCccccccceehhhcCHHHhccccccCC---CCCcc-ceEeeecChHHh
Confidence 344557788999999999999999999987 5678899965 99999 779999987654
No 193
>PRK06526 transposase; Provisional
Probab=96.71 E-value=0.0013 Score=72.03 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=20.0
Q ss_pred HHHhhccEEEEecCCCCCCcCChhhh
Q 001729 37 EKVLENRVTLIVGETGCGKSSQVPQF 62 (1020)
Q Consensus 37 ~~i~~~~~vII~apTGSGKTt~ip~~ 62 (1020)
+.+..+++++++||+|+|||+....+
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al 118 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGL 118 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHH
Confidence 34557789999999999999654433
No 194
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.71 E-value=0.0018 Score=81.51 Aligned_cols=122 Identities=17% Similarity=0.148 Sum_probs=73.8
Q ss_pred CcchhhhHHHHHHHHhh-ccEEEEecCCCCCCcCChhhhh--hhcCCccccccCCceehhhhHHHHHhhccccccCcccc
Q 001729 25 SLPVMSLREKIVEKVLE-NRVTLIVGETGCGKSSQVPQFL--LAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (1020)
Q Consensus 25 ~LPi~~~Q~eil~~i~~-~~~vII~apTGSGKTt~ip~~l--le~~~~~IivtqPrrlaa~sva~rva~e~~~~lg~~Vg 101 (1020)
...+.+-|.+++..+.. ++.++|.|+.|+||||.+-..+ ++.....|+.+.|+-.+|..+.+ ..|..
T Consensus 350 ~~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~----~~g~~------ 419 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQA----ESGIE------ 419 (744)
T ss_pred cCCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHh----ccCCc------
Confidence 35678999999999876 5899999999999998665443 23323467777887776655442 22211
Q ss_pred eeccccccccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhccCCeEEEEee
Q 001729 102 YHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (1020)
Q Consensus 102 y~i~~~~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmS 176 (1020)
-.|-..++..+......+...++|||||+- +++.+.+..+++... ....|+|++-
T Consensus 420 ----------------a~Ti~~~~~~~~~~~~~~~~~~llIvDEas--Mv~~~~~~~Ll~~~~--~~~~kliLVG 474 (744)
T TIGR02768 420 ----------------SRTLASLEYAWANGRDLLSDKDVLVIDEAG--MVGSRQMARVLKEAE--EAGAKVVLVG 474 (744)
T ss_pred ----------------eeeHHHHHhhhccCcccCCCCcEEEEECcc--cCCHHHHHHHHHHHH--hcCCEEEEEC
Confidence 012122211112111123478999999998 455544444444332 2456777765
No 195
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=96.69 E-value=0.0077 Score=66.55 Aligned_cols=163 Identities=17% Similarity=0.147 Sum_probs=84.0
Q ss_pred CCCCCCCCcccCcchhhhHHHHHHHHh----------hccEEEEecCCCCCCcCChhhhhhhcC---Cc-cccccCCcee
Q 001729 14 YSSPFTSPEFSSLPVMSLREKIVEKVL----------ENRVTLIVGETGCGKSSQVPQFLLAEN---ME-PILCTQPRRF 79 (1020)
Q Consensus 14 ~~~~~~~~~r~~LPi~~~Q~eil~~i~----------~~~~vII~apTGSGKTt~ip~~lle~~---~~-~IivtqPrrl 79 (1020)
+....|+.....--++..|-|.+--.. ...-.+|-=.||.||--++.-+|+++. .+ .|.++....+
T Consensus 24 y~~~lp~~~~~~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL 103 (303)
T PF13872_consen 24 YRLHLPEEVIDSGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDL 103 (303)
T ss_pred cccCCCHHHHhcccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhh
Confidence 434444432233234566655544332 234677788899999999999988763 33 4666655443
Q ss_pred hhhhHHHHHhhccccccCcccc-eeccccccccccceEEeeechhhhHHHHHh---ccc-------c--ceeEEEEeecc
Q 001729 80 AVVAVAKMVAKGRNCELGGEVG-YHIGHSKHLSERSKIVFKTAGVLLDEMRDR---GLN-------A--LKYKVIILDEV 146 (1020)
Q Consensus 80 aa~sva~rva~e~~~~lg~~Vg-y~i~~~~~~~~~t~Iiv~Tpg~Ll~~l~~~---~l~-------l--~~~s~IIIDEa 146 (1020)
. ....+.+.. .|..--.... ......+...-...|+|+|.-.|...-... ... + .--.+||+||+
T Consensus 104 ~-~Da~RDl~D-IG~~~i~v~~l~~~~~~~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEc 181 (303)
T PF13872_consen 104 K-YDAERDLRD-IGADNIPVHPLNKFKYGDIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDEC 181 (303)
T ss_pred h-hHHHHHHHH-hCCCcccceechhhccCcCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccc
Confidence 3 222333332 1111000000 000111112234569999998876653210 000 0 12369999999
Q ss_pred cccccccce-------eehhhhhHhhccCCeEEEEeeccc
Q 001729 147 HERSVESDL-------VLVCVKQLLLKKNDLRVVLMSATA 179 (1020)
Q Consensus 147 HER~l~~d~-------ll~~lk~ll~~~~~lkiIlmSATl 179 (1020)
|. .-+..- .-.....+..+-|+.|++-+|||-
T Consensus 182 H~-akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATg 220 (303)
T PF13872_consen 182 HK-AKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATG 220 (303)
T ss_pred hh-cCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccc
Confidence 94 333221 011233445556888999999994
No 196
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.66 E-value=0.0037 Score=60.94 Aligned_cols=31 Identities=23% Similarity=0.321 Sum_probs=22.2
Q ss_pred HHHHHHHhh--ccEEEEecCCCCCCcCChhhhh
Q 001729 33 EKIVEKVLE--NRVTLIVGETGCGKSSQVPQFL 63 (1020)
Q Consensus 33 ~eil~~i~~--~~~vII~apTGSGKTt~ip~~l 63 (1020)
.++...+.. ++.++|.||+|+|||+.+-..+
T Consensus 8 ~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~ 40 (151)
T cd00009 8 EALREALELPPPKNLLLYGPPGTGKTTLARAIA 40 (151)
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHH
Confidence 344455555 6889999999999997554443
No 197
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.64 E-value=0.0016 Score=62.92 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=25.5
Q ss_pred ccEEEEecCCCCCCcCChhhhhhhcCCc--cccccCCc
Q 001729 42 NRVTLIVGETGCGKSSQVPQFLLAENME--PILCTQPR 77 (1020)
Q Consensus 42 ~~~vII~apTGSGKTt~ip~~lle~~~~--~IivtqPr 77 (1020)
++.++|.||+|||||+.+..++...... .++.+.+.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~ 39 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGE 39 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCE
Confidence 5789999999999998877766554443 34444443
No 198
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=96.59 E-value=0.0014 Score=74.57 Aligned_cols=51 Identities=39% Similarity=0.798 Sum_probs=43.2
Q ss_pred CCccceeeccc---cccCCCCCCCCcCcCC----C----CCCccceeccCCCCCCCCCccCC
Q 001729 736 EAPLCVYFING---SCNRGTGCPFSHSLQA----K----RPACKFFYSLQGCRNGDSCIFSH 786 (1020)
Q Consensus 736 ~~~~C~~f~~G---~C~~G~~C~f~H~~~~----~----~~~C~~f~~~g~C~~g~~C~f~H 786 (1020)
+..+|.-...| .|.+|++|+|.||... + .+-|.+|...|.|.+|-+|+|.-
T Consensus 75 ~n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLatK~~Dig~~Cp~f~s~G~Cp~G~~CRFl~ 136 (614)
T KOG2333|consen 75 QNRLCPSLIQGDISKCSFGDNCRFVHDIEAYLATKAPDIGPSCPVFESLGFCPYGFKCRFLG 136 (614)
T ss_pred hhccChHhhcCCCccCcccccccccccHHHHHhccCcccCCccceeeccccCCccceeehhh
Confidence 56789998876 6999999999999821 1 35699999999999999999963
No 199
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=96.55 E-value=0.0033 Score=79.29 Aligned_cols=134 Identities=17% Similarity=0.147 Sum_probs=72.3
Q ss_pred cEEEEecCCCCCCcCChhhhhhh----cCCccccccCCceehhhhHHHHHh-----hccccccC-cccceecccccc---
Q 001729 43 RVTLIVGETGCGKSSQVPQFLLA----ENMEPILCTQPRRFAVVAVAKMVA-----KGRNCELG-GEVGYHIGHSKH--- 109 (1020)
Q Consensus 43 ~~vII~apTGSGKTt~ip~~lle----~~~~~IivtqPrrlaa~sva~rva-----~e~~~~lg-~~Vgy~i~~~~~--- 109 (1020)
.++.+.++||+|||..+...+++ .+..+.++++|+...-..+.+.+. ..+....+ ..+-+.+-....
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k 139 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKK 139 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccc
Confidence 58999999999999765555543 355678888888665444443332 11111121 112221111000
Q ss_pred ------c-------------cccceEEeeechhhhHHHH-----H--------hccccc--eeEEEEeecccccccccce
Q 001729 110 ------L-------------SERSKIVFKTAGVLLDEMR-----D--------RGLNAL--KYKVIILDEVHERSVESDL 155 (1020)
Q Consensus 110 ------~-------------~~~t~Iiv~Tpg~Ll~~l~-----~--------~~l~l~--~~s~IIIDEaHER~l~~d~ 155 (1020)
. ...-.|+++|.++|..... + .++... .=-+|||||.|. . +++
T Consensus 140 ~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~-~-~~~- 216 (986)
T PRK15483 140 SGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHR-F-PRD- 216 (986)
T ss_pred cccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCC-C-Ccc-
Confidence 0 1146899999998865321 0 011000 235799999993 2 221
Q ss_pred eehhhhhHhhccCCeEEEEeecccch
Q 001729 156 VLVCVKQLLLKKNDLRVVLMSATADI 181 (1020)
Q Consensus 156 ll~~lk~ll~~~~~lkiIlmSATld~ 181 (1020)
..-.+.+...+|. -++..|||.+.
T Consensus 217 -~k~~~~i~~lnpl-~~lrysAT~~~ 240 (986)
T PRK15483 217 -NKFYQAIEALKPQ-MIIRFGATFPD 240 (986)
T ss_pred -hHHHHHHHhcCcc-cEEEEeeecCC
Confidence 1122344444543 36669999854
No 200
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=96.54 E-value=0.00052 Score=84.60 Aligned_cols=165 Identities=19% Similarity=0.197 Sum_probs=98.9
Q ss_pred CcchhhhHHHHHHHHhh----------------ccEEEEecCCCCCCcCChhhhhh----hcCCccccccCCceehhhhH
Q 001729 25 SLPVMSLREKIVEKVLE----------------NRVTLIVGETGCGKSSQVPQFLL----AENMEPILCTQPRRFAVVAV 84 (1020)
Q Consensus 25 ~LPi~~~Q~eil~~i~~----------------~~~vII~apTGSGKTt~ip~~ll----e~~~~~IivtqPrrlaa~sv 84 (1020)
.||+...+...++.+.. +.++++-+|||+|||..+-..+. .....+++++.|-..+....
T Consensus 910 plp~~~L~~~~~e~~~~~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker 989 (1230)
T KOG0952|consen 910 PLPSSALKNVVFEALYKYFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKER 989 (1230)
T ss_pred CCcchhhccccHHHhhcccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhccc
Confidence 46666666555555543 24678899999999966554443 33446899999988887777
Q ss_pred HHHHhhccccccCcccceeccc---cccccccceEEeeechhhhHHHHHh--ccccceeEEEEeecccccccccceeehh
Q 001729 85 AKMVAKGRNCELGGEVGYHIGH---SKHLSERSKIVFKTAGVLLDEMRDR--GLNALKYKVIILDEVHERSVESDLVLVC 159 (1020)
Q Consensus 85 a~rva~e~~~~lg~~Vgy~i~~---~~~~~~~t~Iiv~Tpg~Ll~~l~~~--~l~l~~~s~IIIDEaHER~l~~d~ll~~ 159 (1020)
+.+........ |..++-..+. +-..-.+++|+++||+..-...++. .-.+.+++.+|+||.|.-+-+....+.+
T Consensus 990 ~~Dw~~r~~~~-g~k~ie~tgd~~pd~~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~rgPVle~ 1068 (1230)
T KOG0952|consen 990 SDDWSKRDELP-GIKVIELTGDVTPDVKAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGEDRGPVLEV 1068 (1230)
T ss_pred ccchhhhcccC-CceeEeccCccCCChhheecCceEEcccccccCccccccchhhhccccceeecccccccCCCcceEEE
Confidence 77666544333 3322222111 1122346899999999886654421 1124488999999999433332222222
Q ss_pred -hhhHh----hccCCeEEEEeecc-cchhhhhHHHhh
Q 001729 160 -VKQLL----LKKNDLRVVLMSAT-ADITKYRDYFRD 190 (1020)
Q Consensus 160 -lk~ll----~~~~~lkiIlmSAT-ld~~~~~~~f~~ 190 (1020)
....- ...+.+|++++|-- .++.++++|++.
T Consensus 1069 ivsr~n~~s~~t~~~vr~~glsta~~na~dla~wl~~ 1105 (1230)
T KOG0952|consen 1069 IVSRMNYISSQTEEPVRYLGLSTALANANDLADWLNI 1105 (1230)
T ss_pred EeeccccCccccCcchhhhhHhhhhhccHHHHHHhCC
Confidence 21111 11234677777644 488899999875
No 201
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.53 E-value=0.0041 Score=71.25 Aligned_cols=120 Identities=13% Similarity=0.213 Sum_probs=66.5
Q ss_pred cEEEEecCCCCCCcCChhhhhhh---cCCcc-ccccCCceehhhhHHHHHhhccccccCcccceeccccccccccceEEe
Q 001729 43 RVTLIVGETGCGKSSQVPQFLLA---ENMEP-ILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVF 118 (1020)
Q Consensus 43 ~~vII~apTGSGKTt~ip~~lle---~~~~~-IivtqPrrlaa~sva~rva~e~~~~lg~~Vgy~i~~~~~~~~~t~Iiv 118 (1020)
+++.++||||+||||.+..+... .+... ++-+-|-|+++...-+..++..+.++ +..
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv-------------------~v~ 302 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEV-------------------IAV 302 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcE-------------------Eec
Confidence 68899999999999877666432 23222 33334556655544444444332211 112
Q ss_pred eechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHh-hccCCeEEEEeecccchhh
Q 001729 119 KTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLL-LKKNDLRVVLMSATADITK 183 (1020)
Q Consensus 119 ~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll-~~~~~lkiIlmSATld~~~ 183 (1020)
.++..+.+.+..-. ...++++||||-+= |+....-.+.-++.++ ...++-.++.+|||.....
T Consensus 303 ~d~~~L~~aL~~lk-~~~~~DvVLIDTaG-Rs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d 366 (436)
T PRK11889 303 RDEAAMTRALTYFK-EEARVDYILIDTAG-KNYRASETVEEMIETMGQVEPDYICLTLSASMKSKD 366 (436)
T ss_pred CCHHHHHHHHHHHH-hccCCCEEEEeCcc-ccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHH
Confidence 35555655443211 01158999999997 5444333333344443 3345656777999874443
No 202
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.52 E-value=0.0022 Score=65.83 Aligned_cols=121 Identities=17% Similarity=0.135 Sum_probs=69.4
Q ss_pred cccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc-eEEEEec--cccccccccc--eeEEe
Q 001729 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATN--IAESSVTIPK--VAYVI 350 (1020)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVLVATn--iae~GIdIp~--V~~VI 350 (1020)
+|.+|||+|+.+..+.+.+.+........+..+.. ...+...+++.|+.+. .|++++. .+.+|||+|+ ++.||
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vi 86 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVI 86 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhheee
Confidence 47999999999999999999875432111222222 2445667788888877 8999998 9999999995 77888
Q ss_pred ecccceeeeeecccc--cc----------ceeeEEeehhHHHHhcCCCCcccCCeeEEee
Q 001729 351 DSCRSLQVFWDVNRK--ID----------SAELVWVSQSQAEQRRGRTGRTCDGQVYRLV 398 (1020)
Q Consensus 351 d~G~~k~~~yd~~~~--~~----------~l~~~~iSkas~~QR~GRAGR~~~G~c~rLy 398 (1020)
-.|+.-...-|+... .+ .....+-.--...|-+||+=|...-.+..+.
T Consensus 87 i~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~l 146 (167)
T PF13307_consen 87 IVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIIL 146 (167)
T ss_dssp EES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEE
T ss_pred ecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEE
Confidence 777754322222110 00 0001111223567999999999654444443
No 203
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.52 E-value=0.0025 Score=81.53 Aligned_cols=124 Identities=15% Similarity=0.141 Sum_probs=74.7
Q ss_pred CcchhhhHHHHHHHHhh-ccEEEEecCCCCCCcCChhhh--hhhcCCccccccCCceehhhhHHHHHhhccccccCcccc
Q 001729 25 SLPVMSLREKIVEKVLE-NRVTLIVGETGCGKSSQVPQF--LLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (1020)
Q Consensus 25 ~LPi~~~Q~eil~~i~~-~~~vII~apTGSGKTt~ip~~--lle~~~~~IivtqPrrlaa~sva~rva~e~~~~lg~~Vg 101 (1020)
.+.+.+-|.+++..+.. ++.++|+|..|+||||.+-.. +++.....|+.+.|+-.+|..+.+ ..|..
T Consensus 344 g~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e----~tGi~------ 413 (988)
T PRK13889 344 GLVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEG----GSGIA------ 413 (988)
T ss_pred CCCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHhh----ccCcc------
Confidence 46789999999999887 467899999999999865332 223333467777887776655432 21111
Q ss_pred eeccccccccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhccCCeEEEEeecc
Q 001729 102 YHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (1020)
Q Consensus 102 y~i~~~~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmSAT 178 (1020)
-.|-..|+..+..+...+...++|||||+- ++++..+..+++... ....|||++-=+
T Consensus 414 ----------------a~TI~sll~~~~~~~~~l~~~~vlIVDEAS--Mv~~~~m~~LL~~a~--~~garvVLVGD~ 470 (988)
T PRK13889 414 ----------------SRTIASLEHGWGQGRDLLTSRDVLVIDEAG--MVGTRQLERVLSHAA--DAGAKVVLVGDP 470 (988)
T ss_pred ----------------hhhHHHHHhhhcccccccccCcEEEEECcc--cCCHHHHHHHHHhhh--hCCCEEEEECCH
Confidence 012122221111111123477999999998 555554444444332 346788887654
No 204
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=96.51 E-value=0.0094 Score=74.16 Aligned_cols=111 Identities=21% Similarity=0.275 Sum_probs=92.8
Q ss_pred cccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc---eEEEEeccccccccccceeEEeec
Q 001729 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR---KVILATNIAESSVTIPKVAYVIDS 352 (1020)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr---kVLVATniae~GIdIp~V~~VId~ 352 (1020)
+.++|||..-....+-+-..|. ..++..+-|.|....++|...++.|...+ ..|++|-....|||+-+.+.||.
T Consensus 1276 ghRvLIfTQMtkmLDVLeqFLn--yHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvF- 1352 (1958)
T KOG0391|consen 1276 GHRVLIFTQMTKMLDVLEQFLN--YHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVF- 1352 (1958)
T ss_pred CceEEehhHHHHHHHHHHHHHh--hcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEE-
Confidence 4689999988877777777776 45677888899999999999999997665 67899999999999999999997
Q ss_pred ccceeeeeeccccccceeeEEeehhHHHHhcCCCCcccCCeeEEeechhhc
Q 001729 353 CRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFF 403 (1020)
Q Consensus 353 G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~c~rLys~~~~ 403 (1020)
||...+.. =-+++.-|.-|.|+++.=..|||+++...
T Consensus 1353 -------YDsDwNPt-------MDaQAQDrChRIGqtRDVHIYRLISe~TI 1389 (1958)
T KOG0391|consen 1353 -------YDSDWNPT-------MDAQAQDRCHRIGQTRDVHIYRLISERTI 1389 (1958)
T ss_pred -------ecCCCCch-------hhhHHHHHHHhhcCccceEEEEeeccchH
Confidence 88766543 23677889999999999999999998644
No 205
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.47 E-value=0.0019 Score=69.04 Aligned_cols=63 Identities=22% Similarity=0.333 Sum_probs=49.2
Q ss_pred hhhhHHHHHHHHhhccE-EEEecCCCCCCcCChhhhhhhc----------CCccccccCCceehhhhHHHHHhh
Q 001729 28 VMSLREKIVEKVLENRV-TLIVGETGCGKSSQVPQFLLAE----------NMEPILCTQPRRFAVVAVAKMVAK 90 (1020)
Q Consensus 28 i~~~Q~eil~~i~~~~~-vII~apTGSGKTt~ip~~lle~----------~~~~IivtqPrrlaa~sva~rva~ 90 (1020)
+.+.|.+++..+..... ++|.||+|+|||+.+...+... ...+|+++.|+-.++..+.+++.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 46789999999998887 9999999999997666655443 234899999999999999888877
No 206
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=96.43 E-value=0.0017 Score=72.56 Aligned_cols=59 Identities=31% Similarity=0.649 Sum_probs=46.6
Q ss_pred CCCCccceeec-cccccCCCCCCCCcCc-CCCCCCccceeccCCCCCCCCCccCCCCCCCCCC
Q 001729 734 PGEAPLCVYFI-NGSCNRGTGCPFSHSL-QAKRPACKFFYSLQGCRNGDSCIFSHDLGQPVLP 794 (1020)
Q Consensus 734 ~~~~~~C~~f~-~G~C~~G~~C~f~H~~-~~~~~~C~~f~~~g~C~~g~~C~f~H~~~~~~~~ 794 (1020)
.+.++ |.||. .|.|.+|..|+|.|.. ..+...|++| ..|.|+.|..|++.|.......+
T Consensus 103 ~k~re-c~ff~~~g~c~~~~~c~y~h~dpqt~~k~c~~~-~~g~c~~g~~c~~~h~~~~~c~~ 163 (325)
T KOG1040|consen 103 TKMRE-CKFFSLFGECTNGKDCPYLHGDPQTAIKKCKWY-KEGFCRGGPSCKKRHERKVLCPP 163 (325)
T ss_pred ccccc-ccccccccccccccCCcccCCChhhhhhccchh-hhccCCCcchhhhhhhcccCCCc
Confidence 44445 77777 5999999999999985 5666789999 88999999999999988654333
No 207
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=96.34 E-value=0.0077 Score=65.90 Aligned_cols=61 Identities=34% Similarity=0.652 Sum_probs=48.9
Q ss_pred CCccceee-ccccccCCCCCCCCcCc-CCCCCCccceec--cCCCCCCCCCccCCCCCCCCCCCC
Q 001729 736 EAPLCVYF-INGSCNRGTGCPFSHSL-QAKRPACKFFYS--LQGCRNGDSCIFSHDLGQPVLPSS 796 (1020)
Q Consensus 736 ~~~~C~~f-~~G~C~~G~~C~f~H~~-~~~~~~C~~f~~--~g~C~~g~~C~f~H~~~~~~~~~~ 796 (1020)
....|+|| ..|.|..|..|.|.|.. ......|.+|.. .+.|.+|..|++.|......+.++
T Consensus 133 ~~~~c~~Fs~~G~cs~g~~c~~~h~dp~~~~~~~~~~~~~~~~f~p~g~~c~~~H~~~~~~~~~~ 197 (285)
T COG5084 133 QGPPCRSFSLKGSCSSGPSCGYSHIDPDSFAGNCDQYSGATYGFCPLGASCKFSHTLKRVSYGSS 197 (285)
T ss_pred cCCCcccccccceeccCCCCCccccCcccccccccccCcccccccCCCCcccccccccccccccc
Confidence 56779999 57999999999999974 334567999942 799999999999999865544443
No 208
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.32 E-value=0.0073 Score=71.12 Aligned_cols=124 Identities=20% Similarity=0.255 Sum_probs=68.3
Q ss_pred ccEEEEecCCCCCCcCChhhhhhhc-----CCcc-ccccCCceehhhhHHHHHhhccccccCcccceeccccccccccce
Q 001729 42 NRVTLIVGETGCGKSSQVPQFLLAE-----NMEP-ILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSK 115 (1020)
Q Consensus 42 ~~~vII~apTGSGKTt~ip~~lle~-----~~~~-IivtqPrrlaa~sva~rva~e~~~~lg~~Vgy~i~~~~~~~~~t~ 115 (1020)
+++++++||||+||||.+..+.... +.+. ++-+-|-|.++.......++.++.++
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~------------------- 281 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPV------------------- 281 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCce-------------------
Confidence 5689999999999998777664322 2222 22334445555544444454433221
Q ss_pred EEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhh-c-cCCeEEEEeecccchhhhhHHHh
Q 001729 116 IVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLL-K-KNDLRVVLMSATADITKYRDYFR 189 (1020)
Q Consensus 116 Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~-~-~~~lkiIlmSATld~~~~~~~f~ 189 (1020)
....++.-+...+.. +.++++||||.+- |.....-....++.++. . .+.-..+++|||.....+.+...
T Consensus 282 ~~~~~~~~l~~~l~~----~~~~DlVlIDt~G-~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~ 352 (424)
T PRK05703 282 EVVYDPKELAKALEQ----LRDCDVILIDTAG-RSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYK 352 (424)
T ss_pred EccCCHHhHHHHHHH----hCCCCEEEEeCCC-CCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHH
Confidence 111233334444432 2278999999997 33322222333444443 2 34456888999986665555443
No 209
>PRK08181 transposase; Validated
Probab=96.31 E-value=0.008 Score=66.42 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=18.2
Q ss_pred HHhhccEEEEecCCCCCCcCCh
Q 001729 38 KVLENRVTLIVGETGCGKSSQV 59 (1020)
Q Consensus 38 ~i~~~~~vII~apTGSGKTt~i 59 (1020)
.+.+++++++.||+|+|||..+
T Consensus 102 ~~~~~~nlll~Gp~GtGKTHLa 123 (269)
T PRK08181 102 WLAKGANLLLFGPPGGGKSHLA 123 (269)
T ss_pred HHhcCceEEEEecCCCcHHHHH
Confidence 3457789999999999999544
No 210
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.29 E-value=0.0042 Score=71.91 Aligned_cols=57 Identities=19% Similarity=0.308 Sum_probs=44.0
Q ss_pred hhhhHHHHHHHH------hhccEEEEecCCCCCCcCChhhhhh--hcCCccccccCCceehhhhH
Q 001729 28 VMSLREKIVEKV------LENRVTLIVGETGCGKSSQVPQFLL--AENMEPILCTQPRRFAVVAV 84 (1020)
Q Consensus 28 i~~~Q~eil~~i------~~~~~vII~apTGSGKTt~ip~~ll--e~~~~~IivtqPrrlaa~sv 84 (1020)
+.+-|.++++.+ .++.++.|.|+-|+|||+.+-.+.- ......++++.|+.+||..+
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhc
Confidence 456788888888 6778999999999999987654432 22334799999999998766
No 211
>PRK04296 thymidine kinase; Provisional
Probab=96.26 E-value=0.0045 Score=64.90 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=25.3
Q ss_pred ccEEEEecCCCCCCcCChhhhhhhc--CCccccccCC
Q 001729 42 NRVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQP 76 (1020)
Q Consensus 42 ~~~vII~apTGSGKTt~ip~~lle~--~~~~IivtqP 76 (1020)
+..+++.||+|+||||.+..++... ...++++.-|
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 4678999999999999888887654 2235555434
No 212
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=96.23 E-value=0.0023 Score=40.77 Aligned_cols=11 Identities=73% Similarity=1.555 Sum_probs=5.9
Q ss_pred CCCCCCCccCC
Q 001729 776 CRNGDSCIFSH 786 (1020)
Q Consensus 776 C~~g~~C~f~H 786 (1020)
|++|++|.|.|
T Consensus 8 C~~~~~C~f~H 18 (19)
T PF14608_consen 8 CTNGDNCPFSH 18 (19)
T ss_pred CCCCCcCccCC
Confidence 55555555555
No 213
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=96.17 E-value=0.0044 Score=66.74 Aligned_cols=56 Identities=20% Similarity=0.300 Sum_probs=48.6
Q ss_pred CCCCCccceeecc-ccccCCCCCCCCcCcCC------------CCCCccceeccCCCCCCCCCccCCCC
Q 001729 733 TPGEAPLCVYFIN-GSCNRGTGCPFSHSLQA------------KRPACKFFYSLQGCRNGDSCIFSHDL 788 (1020)
Q Consensus 733 ~~~~~~~C~~f~~-G~C~~G~~C~f~H~~~~------------~~~~C~~f~~~g~C~~g~~C~f~H~~ 788 (1020)
...++++|..|.. |.|.+|..|.|.|.... ...+|+-+...|.|..|.+|.++|+.
T Consensus 270 ~~frTePcinwe~sGyc~yg~Rc~F~hgd~~~ie~~~~~~~~y~~~~crt~~~~g~~p~g~~~c~~~dk 338 (351)
T COG5063 270 QNFRTEPCINWEKSGYCPYGLRCCFKHGDDSDIEMYEEASLGYLDGPCRTRAKGGAFPSGGAVCKSFDK 338 (351)
T ss_pred cccccCCccchhhcccCccccccccccCChhhccccccccccccccccccccccCccCCCCchhhcccc
Confidence 3568899999995 99999999999998621 24579999999999999999999987
No 214
>PRK14974 cell division protein FtsY; Provisional
Probab=96.15 E-value=0.014 Score=66.50 Aligned_cols=120 Identities=18% Similarity=0.241 Sum_probs=65.8
Q ss_pred cEEEEecCCCCCCcCChhhhh---hhcCCcccccc-CCceehhhhHHHHHhhccccccCcccceeccccccccccceEEe
Q 001729 43 RVTLIVGETGCGKSSQVPQFL---LAENMEPILCT-QPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVF 118 (1020)
Q Consensus 43 ~~vII~apTGSGKTt~ip~~l---le~~~~~Iivt-qPrrlaa~sva~rva~e~~~~lg~~Vgy~i~~~~~~~~~t~Iiv 118 (1020)
..++++|++|+||||.+..+. ...+...+++. -+.|..+....+..+..++.++.. +.. ..++
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~--~~~-------g~dp---- 207 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIK--HKY-------GADP---- 207 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceec--ccC-------CCCH----
Confidence 578999999999998765554 33333333333 345666655555556655543211 000 0000
Q ss_pred eechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHh-hccCCeEEEEeecccc
Q 001729 119 KTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLL-LKKNDLRVVLMSATAD 180 (1020)
Q Consensus 119 ~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll-~~~~~lkiIlmSATld 180 (1020)
..++.+.+... ...++++||||.++ |.....-++.-++.+. ...++..+++++||..
T Consensus 208 --~~v~~~ai~~~--~~~~~DvVLIDTaG-r~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g 265 (336)
T PRK14974 208 --AAVAYDAIEHA--KARGIDVVLIDTAG-RMHTDANLMDELKKIVRVTKPDLVIFVGDALAG 265 (336)
T ss_pred --HHHHHHHHHHH--HhCCCCEEEEECCC-ccCCcHHHHHHHHHHHHhhCCceEEEeeccccc
Confidence 01122222211 12268899999999 5543333333344443 2467888999999974
No 215
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.12 E-value=0.009 Score=71.01 Aligned_cols=126 Identities=17% Similarity=0.257 Sum_probs=66.0
Q ss_pred hhccEEEEecCCCCCCcCChhhhhhh---cC-Ccccc--ccCCceehhhhHHHHHhhccccccCcccceecccccccccc
Q 001729 40 LENRVTLIVGETGCGKSSQVPQFLLA---EN-MEPIL--CTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSER 113 (1020)
Q Consensus 40 ~~~~~vII~apTGSGKTt~ip~~lle---~~-~~~Ii--vtqPrrlaa~sva~rva~e~~~~lg~~Vgy~i~~~~~~~~~ 113 (1020)
..+++++++||||+||||.+..+... .. ..+|. -+-+.|+.+....+..+..++..+ .
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v------~---------- 411 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAV------H---------- 411 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCcee------E----------
Confidence 45789999999999999877655432 21 22332 233445555443333333222111 0
Q ss_pred ceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhccCCeEEEEeecccchhhhhHHHh
Q 001729 114 SKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADITKYRDYFR 189 (1020)
Q Consensus 114 t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmSATld~~~~~~~f~ 189 (1020)
...+++.+...+.. +.++++||||.+- ++.....+...+..+......-.+++++++.....+.+.+.
T Consensus 412 ---~a~d~~~L~~aL~~----l~~~DLVLIDTaG-~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~eii~ 479 (559)
T PRK12727 412 ---EADSAESLLDLLER----LRDYKLVLIDTAG-MGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLDEVVR 479 (559)
T ss_pred ---ecCcHHHHHHHHHH----hccCCEEEecCCC-cchhhHHHHHHHHHHHHhhcCCcEEEEECCCChhHHHHHHH
Confidence 01123344444432 2378999999997 33222222223333333334457888899875554444443
No 216
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=96.05 E-value=0.11 Score=60.86 Aligned_cols=111 Identities=15% Similarity=0.126 Sum_probs=82.6
Q ss_pred cccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc-eEEEEecccc--ccccccceeEEeec
Q 001729 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAE--SSVTIPKVAYVIDS 352 (1020)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVLVATniae--~GIdIp~V~~VId~ 352 (1020)
.+.+|||+|+.-+--.+...|+ ..++....+|--.+..+-.+.-..|..|+ +|++-|.=+- +=..|.+|+.||-
T Consensus 300 ~~~~LIfIPSYfDfVRlRN~lk--~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~viF- 376 (442)
T PF06862_consen 300 MSGTLIFIPSYFDFVRLRNYLK--KENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIF- 376 (442)
T ss_pred CCcEEEEecchhhhHHHHHHHH--hcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEEE-
Confidence 4789999999999999998888 45577778888777777777777888888 9999995321 2345778888887
Q ss_pred ccceeeeeeccccccceeeEEeehhHHHHhcCCCCc----ccCCeeEEeechhhc
Q 001729 353 CRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGR----TCDGQVYRLVTKSFF 403 (1020)
Q Consensus 353 G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR----~~~G~c~rLys~~~~ 403 (1020)
|.+|....-| ++...+.+.... ...+.|..||++-+.
T Consensus 377 -------Y~~P~~p~fY-------~El~n~~~~~~~~~~~~~~~~~~~lysk~D~ 417 (442)
T PF06862_consen 377 -------YGPPENPQFY-------SELLNMLDESSGGEVDAADATVTVLYSKYDA 417 (442)
T ss_pred -------ECCCCChhHH-------HHHHhhhcccccccccccCceEEEEecHhHH
Confidence 8888877766 444555554332 256889999997544
No 217
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.01 E-value=0.0094 Score=69.17 Aligned_cols=124 Identities=15% Similarity=0.181 Sum_probs=70.1
Q ss_pred ccEEEEecCCCCCCcCChhhhhhhc----CCc-cccccCCceehhhhHHHHHhhccccccCcccceeccccccccccceE
Q 001729 42 NRVTLIVGETGCGKSSQVPQFLLAE----NME-PILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKI 116 (1020)
Q Consensus 42 ~~~vII~apTGSGKTt~ip~~lle~----~~~-~IivtqPrrlaa~sva~rva~e~~~~lg~~Vgy~i~~~~~~~~~t~I 116 (1020)
+..++++||||+||||++.+++... +.. .++-+-+-|.++....++.++..+.++- .
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~-----~------------- 284 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFY-----P------------- 284 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCee-----e-------------
Confidence 4578899999999999988887532 222 2344455677777767776665543220 0
Q ss_pred EeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhc----cCCeEEEEeecccchh---hhhHHHh
Q 001729 117 VFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLK----KNDLRVVLMSATADIT---KYRDYFR 189 (1020)
Q Consensus 117 iv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~----~~~lkiIlmSATld~~---~~~~~f~ 189 (1020)
+.....+...+.. .++++||||=+- |.....-.+.-++.++.. .+.-.++++|||...+ ...++|.
T Consensus 285 -~~~~~~l~~~l~~-----~~~D~VLIDTaG-r~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~ 357 (432)
T PRK12724 285 -VKDIKKFKETLAR-----DGSELILIDTAG-YSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYE 357 (432)
T ss_pred -hHHHHHHHHHHHh-----CCCCEEEEeCCC-CCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhc
Confidence 0011223333321 278999999776 443222233333433332 2345788999998544 4444454
Q ss_pred h
Q 001729 190 D 190 (1020)
Q Consensus 190 ~ 190 (1020)
.
T Consensus 358 ~ 358 (432)
T PRK12724 358 S 358 (432)
T ss_pred C
Confidence 3
No 218
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.92 E-value=0.033 Score=64.70 Aligned_cols=109 Identities=19% Similarity=0.159 Sum_probs=73.3
Q ss_pred ccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc-eEEEEeccc--cccccccceeEEeecc
Q 001729 277 KSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIA--ESSVTIPKVAYVIDSC 353 (1020)
Q Consensus 277 g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVLVATnia--e~GIdIp~V~~VId~G 353 (1020)
..|||+.|+.-+--.+...++... +....+|.-.+...-.+.-..|-.|| +|++-|.=+ =+--+|.+|+-||.
T Consensus 553 s~~LiyIPSYfDFVRvRNy~K~e~--i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVf-- 628 (698)
T KOG2340|consen 553 SGILIYIPSYFDFVRVRNYMKKEE--ISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVF-- 628 (698)
T ss_pred CceEEEecchhhHHHHHHHhhhhh--cchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEE--
Confidence 578999999999888888877432 33333333223333223335566666 999999654 24567889999997
Q ss_pred cceeeeeeccccccceeeEEeehhHHHHhcCCCCcc-----cCCeeEEeechhh
Q 001729 354 RSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-----CDGQVYRLVTKSF 402 (1020)
Q Consensus 354 ~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-----~~G~c~rLys~~~ 402 (1020)
|.+|+...-| ++...+.+|+.-. ..-.|-.||++-+
T Consensus 629 ------YqpP~~P~FY-------sEiinm~~k~~~~gn~d~d~~t~~ilytKyD 669 (698)
T KOG2340|consen 629 ------YQPPNNPHFY-------SEIINMSDKTTSQGNTDLDIFTVRILYTKYD 669 (698)
T ss_pred ------ecCCCCcHHH-------HHHHhhhhhhhccCCccccceEEEEEeechh
Confidence 9999988777 5667888876322 2357888899744
No 219
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.84 E-value=0.016 Score=73.11 Aligned_cols=96 Identities=19% Similarity=0.219 Sum_probs=63.5
Q ss_pred hHHHHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccc------cceEEEEeecccchHHHHHHHHhhhc---
Q 001729 256 EVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLS------SFFKVHILHSSVDTEQALMAMKICKS--- 326 (1020)
Q Consensus 256 ~~~~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~------~~~~v~~lHs~l~~~er~~i~~~f~~--- 326 (1020)
...+.+.+.+..+.... +|.+|||.|+....+.+.+.+...+ ....+ +.-+-...++..+++.|+.
T Consensus 505 ~~~~~l~~~i~~~~~~~---pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i--~~E~~~~~~~~~~l~~f~~~~~ 579 (705)
T TIGR00604 505 SLVRNLGELLVEFSKII---PDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLI--FVETKDAQETSDALERYKQAVS 579 (705)
T ss_pred HHHHHHHHHHHHHhhcC---CCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCE--EEeCCCcchHHHHHHHHHHHHh
Confidence 34444555565555544 3789999999999998887765321 01112 1111112456777888854
Q ss_pred -cc-eEEEEe--ccccccccccc--eeEEeecccce
Q 001729 327 -HR-KVILAT--NIAESSVTIPK--VAYVIDSCRSL 356 (1020)
Q Consensus 327 -gr-kVLVAT--niae~GIdIp~--V~~VId~G~~k 356 (1020)
++ .|++|+ ..+.+|||++| .+.||-.|+.-
T Consensus 580 ~~~gavL~av~gGk~sEGIDf~~~~~r~ViivGlPf 615 (705)
T TIGR00604 580 EGRGAVLLSVAGGKVSEGIDFCDDLGRAVIMVGIPY 615 (705)
T ss_pred cCCceEEEEecCCcccCccccCCCCCcEEEEEccCC
Confidence 34 799999 89999999996 68888788764
No 220
>PF13173 AAA_14: AAA domain
Probab=95.81 E-value=0.0095 Score=58.16 Aligned_cols=38 Identities=18% Similarity=0.224 Sum_probs=26.5
Q ss_pred eeEEEEeecccccccccceeehhhhhHhhccCCeEEEEeecc
Q 001729 137 KYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (1020)
Q Consensus 137 ~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmSAT 178 (1020)
+-.+|+|||+|. . .-+...++.+....++.++|+++..
T Consensus 61 ~~~~i~iDEiq~-~---~~~~~~lk~l~d~~~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQY-L---PDWEDALKFLVDNGPNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhh-h---ccHHHHHHHHHHhccCceEEEEccc
Confidence 457899999993 2 2244556666666677888887655
No 221
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=95.81 E-value=0.0026 Score=65.42 Aligned_cols=113 Identities=27% Similarity=0.335 Sum_probs=53.9
Q ss_pred EEecCCCCCCcCChhhhhhhc---CCccccccCCceehhhhHHHHHhhccccccCcccceecccc-------ccccccce
Q 001729 46 LIVGETGCGKSSQVPQFLLAE---NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHS-------KHLSERSK 115 (1020)
Q Consensus 46 II~apTGSGKTt~ip~~lle~---~~~~IivtqPrrlaa~sva~rva~e~~~~lg~~Vgy~i~~~-------~~~~~~t~ 115 (1020)
||.|+-|-|||+.+-..+... +..+|+||.|+...+..+.+.....+.. .||..... ........
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~ 75 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFAEKGLKA-----LGYKEEKKKRIGQIIKLRFNKQR 75 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC-------------------------------CCC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHHhhccc-----cccccccccccccccccccccce
Confidence 689999999997765554332 2347999999999988887766543321 22221000 01123567
Q ss_pred EEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhccCCeEEEEeeccc
Q 001729 116 IVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATA 179 (1020)
Q Consensus 116 Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmSATl 179 (1020)
|.|..|..+...-. ..+++|||||= -+-..+++.++... ..++||.|+
T Consensus 76 i~f~~Pd~l~~~~~-------~~DlliVDEAA------aIp~p~L~~ll~~~---~~vv~stTi 123 (177)
T PF05127_consen 76 IEFVAPDELLAEKP-------QADLLIVDEAA------AIPLPLLKQLLRRF---PRVVFSTTI 123 (177)
T ss_dssp --B--HHHHCCT-----------SCEEECTGG------GS-HHHHHHHHCCS---SEEEEEEEB
T ss_pred EEEECCHHHHhCcC-------CCCEEEEechh------cCCHHHHHHHHhhC---CEEEEEeec
Confidence 77877776654321 45889999997 23344566665444 356777785
No 222
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=95.80 E-value=0.0057 Score=38.98 Aligned_cols=19 Identities=47% Similarity=1.097 Sum_probs=17.0
Q ss_pred cceeeccccccCCCCCCCCcC
Q 001729 739 LCVYFINGSCNRGTGCPFSHS 759 (1020)
Q Consensus 739 ~C~~f~~G~C~~G~~C~f~H~ 759 (1020)
+|+||.. |++|++|+|+|+
T Consensus 1 ~Ck~~~~--C~~~~~C~f~HP 19 (19)
T PF14608_consen 1 PCKFGPN--CTNGDNCPFSHP 19 (19)
T ss_pred CCcCcCC--CCCCCcCccCCc
Confidence 4998877 999999999995
No 223
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.79 E-value=0.014 Score=66.72 Aligned_cols=128 Identities=18% Similarity=0.190 Sum_probs=72.5
Q ss_pred hccEEEEecCCCCCCcCChhhhhhh---cCCc-cccccCCceehhhhHHHHHhhccccccCcccceeccccccccccceE
Q 001729 41 ENRVTLIVGETGCGKSSQVPQFLLA---ENME-PILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKI 116 (1020)
Q Consensus 41 ~~~~vII~apTGSGKTt~ip~~lle---~~~~-~IivtqPrrlaa~sva~rva~e~~~~lg~~Vgy~i~~~~~~~~~t~I 116 (1020)
.+++++++||||+||||.+..+... .+.+ .++-+-|-|.+|...-+..++.++.++ .
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv-------------------~ 265 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVEL-------------------I 265 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCE-------------------E
Confidence 4678999999999999877666542 3332 244445667766555454455433211 0
Q ss_pred EeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhh-ccCCeEEEEeecccchhhhhHHHh
Q 001729 117 VFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLL-KKNDLRVVLMSATADITKYRDYFR 189 (1020)
Q Consensus 117 iv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~-~~~~lkiIlmSATld~~~~~~~f~ 189 (1020)
...+|+-+.+.+..-. ...++++||||=+= |+...+-.+.-++.+.. ..++.-++++|||.......+.+.
T Consensus 266 ~~~dp~dL~~al~~l~-~~~~~D~VLIDTAG-r~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i~~ 337 (407)
T PRK12726 266 VATSPAELEEAVQYMT-YVNCVDHILIDTVG-RNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTILP 337 (407)
T ss_pred ecCCHHHHHHHHHHHH-hcCCCCEEEEECCC-CCccCHHHHHHHHHHhhccCCceEEEECCCcccHHHHHHHHH
Confidence 1124555544333211 11368999999997 44333333333343332 245666788899876655555543
No 224
>PRK08727 hypothetical protein; Validated
Probab=95.78 E-value=0.012 Score=63.76 Aligned_cols=17 Identities=24% Similarity=0.393 Sum_probs=14.4
Q ss_pred cEEEEecCCCCCCcCCh
Q 001729 43 RVTLIVGETGCGKSSQV 59 (1020)
Q Consensus 43 ~~vII~apTGSGKTt~i 59 (1020)
+.+++.|++|+|||+.+
T Consensus 42 ~~l~l~G~~G~GKThL~ 58 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLA 58 (233)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45999999999999644
No 225
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.76 E-value=0.017 Score=71.85 Aligned_cols=122 Identities=17% Similarity=0.203 Sum_probs=73.7
Q ss_pred ccEEEEecCCCCCCcCChhhhhh----hcCCccccc--cCCceehhhhHHHHHhhccccccCcccceeccccccccccce
Q 001729 42 NRVTLIVGETGCGKSSQVPQFLL----AENMEPILC--TQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSK 115 (1020)
Q Consensus 42 ~~~vII~apTGSGKTt~ip~~ll----e~~~~~Iiv--tqPrrlaa~sva~rva~e~~~~lg~~Vgy~i~~~~~~~~~t~ 115 (1020)
++++.++||||+||||.+..+.. ..+..+|.+ +-+-|+.+...-+.+++.++.++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv------------------- 245 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPV------------------- 245 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCc-------------------
Confidence 46889999999999988776652 333333322 33456666655555555544321
Q ss_pred EEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHh-hccCCeEEEEeecccchhhhhHH
Q 001729 116 IVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLL-LKKNDLRVVLMSATADITKYRDY 187 (1020)
Q Consensus 116 Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll-~~~~~lkiIlmSATld~~~~~~~ 187 (1020)
.++.++.-+...+.. +.++++||||=+= |+....-+...++.+. ...+.-.++++|||...+.+.+.
T Consensus 246 ~~~~~~~~l~~al~~----~~~~D~VLIDTAG-Rs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i 313 (767)
T PRK14723 246 HAVKDAADLRFALAA----LGDKHLVLIDTVG-MSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEV 313 (767)
T ss_pred cccCCHHHHHHHHHH----hcCCCEEEEeCCC-CCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHH
Confidence 112245555444442 2377999999998 5554433444444443 23466788999999866655543
No 226
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.76 E-value=0.019 Score=65.27 Aligned_cols=18 Identities=39% Similarity=0.529 Sum_probs=15.6
Q ss_pred hccEEEEecCCCCCCcCC
Q 001729 41 ENRVTLIVGETGCGKSSQ 58 (1020)
Q Consensus 41 ~~~~vII~apTGSGKTt~ 58 (1020)
.+.++++.|+||+|||+.
T Consensus 182 ~~~~Lll~G~~GtGKThL 199 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFL 199 (329)
T ss_pred cCCcEEEECCCCCcHHHH
Confidence 458899999999999963
No 227
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=95.63 E-value=0.012 Score=75.80 Aligned_cols=124 Identities=16% Similarity=0.163 Sum_probs=75.3
Q ss_pred CcchhhhHHHHHHHHh-hccEEEEecCCCCCCcCChhhhh--hhcCCccccccCCceehhhhHHHHHhhccccccCcccc
Q 001729 25 SLPVMSLREKIVEKVL-ENRVTLIVGETGCGKSSQVPQFL--LAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (1020)
Q Consensus 25 ~LPi~~~Q~eil~~i~-~~~~vII~apTGSGKTt~ip~~l--le~~~~~IivtqPrrlaa~sva~rva~e~~~~lg~~Vg 101 (1020)
...+++-|.+++..+. .++.++|+|+.|+||||.+-... ++....+|+.+.|+--+|..+. +..|...
T Consensus 379 ~~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~~L~----e~~Gi~a----- 449 (1102)
T PRK13826 379 HARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEGLE----KEAGIQS----- 449 (1102)
T ss_pred CCCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHHHHH----HhhCCCe-----
Confidence 3678999999999885 57899999999999998765432 3333346777778766665543 3222210
Q ss_pred eeccccccccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhccCCeEEEEeecc
Q 001729 102 YHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (1020)
Q Consensus 102 y~i~~~~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmSAT 178 (1020)
.|-..++..+..+...+..-++|||||+. ++++..+..+++.+. ....|+|++.=+
T Consensus 450 -----------------~TIas~ll~~~~~~~~l~~~~vlVIDEAs--Mv~~~~m~~Ll~~~~--~~garvVLVGD~ 505 (1102)
T PRK13826 450 -----------------RTLSSWELRWNQGRDQLDNKTVFVLDEAG--MVASRQMALFVEAVT--RAGAKLVLVGDP 505 (1102)
T ss_pred -----------------eeHHHHHhhhccCccCCCCCcEEEEECcc--cCCHHHHHHHHHHHH--hcCCEEEEECCH
Confidence 11111111111111123367899999998 566655555555543 345788887644
No 228
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.63 E-value=0.025 Score=69.68 Aligned_cols=38 Identities=24% Similarity=0.413 Sum_probs=24.1
Q ss_pred eeEEEEeecccccccccceeehhhhhHhhccCCeEEEEee
Q 001729 137 KYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (1020)
Q Consensus 137 ~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmS 176 (1020)
+++++||||+|. +..+-...++|.+-...++.++|+.+
T Consensus 119 r~KVIIIDEah~--LT~~A~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 119 RFKVYMIDEVHM--LTNHAFNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CceEEEEeChhh--CCHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 789999999993 33334455666554444455655544
No 229
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.51 E-value=0.022 Score=66.62 Aligned_cols=124 Identities=15% Similarity=0.194 Sum_probs=70.7
Q ss_pred hccEEEEecCCCCCCcCChhhhhhh----cCCc--cccccCCceehhhhHHHHHhhccccccCcccceeccccccccccc
Q 001729 41 ENRVTLIVGETGCGKSSQVPQFLLA----ENME--PILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERS 114 (1020)
Q Consensus 41 ~~~~vII~apTGSGKTt~ip~~lle----~~~~--~IivtqPrrlaa~sva~rva~e~~~~lg~~Vgy~i~~~~~~~~~t 114 (1020)
.++.+.++||||+||||.+..+... .+.. .++..-+.|+.+......+++.+|.++-.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~---------------- 253 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRS---------------- 253 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceec----------------
Confidence 3568999999999999888755432 2222 34555666777776666666655433210
Q ss_pred eEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhcc-CCeEEEEeecccchhhhhHHH
Q 001729 115 KIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKK-NDLRVVLMSATADITKYRDYF 188 (1020)
Q Consensus 115 ~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~-~~lkiIlmSATld~~~~~~~f 188 (1020)
+-++.-+...+. .+.++++|+||.+= |.-..+.+...++.+.... +.-.++++|||...+.+.+..
T Consensus 254 ---v~~~~dl~~al~----~l~~~d~VLIDTaG-rsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~ 320 (420)
T PRK14721 254 ---IKDIADLQLMLH----ELRGKHMVLIDTVG-MSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVI 320 (420)
T ss_pred ---CCCHHHHHHHHH----HhcCCCEEEecCCC-CCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHH
Confidence 111222222222 13377899999975 4433333444445443322 345678899998655555544
No 230
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=95.50 E-value=0.013 Score=67.05 Aligned_cols=55 Identities=29% Similarity=0.736 Sum_probs=47.0
Q ss_pred ccceeecc-ccccCCCCCCCCcCc------------------CCCCCCccceeccCCCCC-CCCCccCCCCCCCC
Q 001729 738 PLCVYFIN-GSCNRGTGCPFSHSL------------------QAKRPACKFFYSLQGCRN-GDSCIFSHDLGQPV 792 (1020)
Q Consensus 738 ~~C~~f~~-G~C~~G~~C~f~H~~------------------~~~~~~C~~f~~~g~C~~-g~~C~f~H~~~~~~ 792 (1020)
..|.+|.. |.|.+|..|+|.|.. ..+++.|++|...|.|+| |++|+|.|......
T Consensus 87 ~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~~~~~~~~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r 161 (332)
T KOG1677|consen 87 GDCSAYLRTGVCGYGSSCRYNHPDLRLRPRPVRRSRGERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELR 161 (332)
T ss_pred cccccccccCCCCCCCCCCccCcccccccCCccccccccCcccccCCcceeeecCccccccCchhhhcCCccccc
Confidence 56999994 999999999999984 113557999999999999 99999999886655
No 231
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=95.49 E-value=0.013 Score=69.32 Aligned_cols=66 Identities=29% Similarity=0.494 Sum_probs=54.5
Q ss_pred Ccc-hhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhh---hhhcCCccccccCCceehhhhHHHHHhh
Q 001729 25 SLP-VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQF---LLAENMEPILCTQPRRFAVVAVAKMVAK 90 (1020)
Q Consensus 25 ~LP-i~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~---lle~~~~~IivtqPrrlaa~sva~rva~ 90 (1020)
.|| +..-|..++++++.+...||.||+|+|||....-+ +.+....+|+|+.|.-+|+.++|+.+.+
T Consensus 407 ~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~ 476 (935)
T KOG1802|consen 407 NLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHK 476 (935)
T ss_pred CchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHh
Confidence 344 67789999999999999999999999999544333 3445667899999999999999998755
No 232
>PRK06893 DNA replication initiation factor; Validated
Probab=95.47 E-value=0.016 Score=62.63 Aligned_cols=18 Identities=28% Similarity=0.326 Sum_probs=14.9
Q ss_pred ccEEEEecCCCCCCcCCh
Q 001729 42 NRVTLIVGETGCGKSSQV 59 (1020)
Q Consensus 42 ~~~vII~apTGSGKTt~i 59 (1020)
+..+++.||+|+|||+.+
T Consensus 39 ~~~l~l~G~~G~GKThL~ 56 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLL 56 (229)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456899999999999644
No 233
>PRK05642 DNA replication initiation factor; Validated
Probab=95.47 E-value=0.018 Score=62.53 Aligned_cols=17 Identities=24% Similarity=0.532 Sum_probs=14.4
Q ss_pred cEEEEecCCCCCCcCCh
Q 001729 43 RVTLIVGETGCGKSSQV 59 (1020)
Q Consensus 43 ~~vII~apTGSGKTt~i 59 (1020)
..+++.|++|+|||+.+
T Consensus 46 ~~l~l~G~~G~GKTHLl 62 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLL 62 (234)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56899999999999643
No 234
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=95.45 E-value=0.0054 Score=68.39 Aligned_cols=22 Identities=23% Similarity=0.015 Sum_probs=14.0
Q ss_pred CccccceeeccccchhhHHhcc
Q 001729 861 TSLAGIRILWGLCHSLKTVISE 882 (1020)
Q Consensus 861 ~~~~~~~~~~~~~~~~~~~~~~ 882 (1020)
.++.++--|.+++=|-++-.+.
T Consensus 267 ~~e~~~g~~~~~~l~~~t~t~~ 288 (486)
T KOG2185|consen 267 GSEQGIGFLESTNLPRQTDTAL 288 (486)
T ss_pred cchhcccccccccccccccHHH
Confidence 3466666777777777665543
No 235
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.43 E-value=0.018 Score=63.64 Aligned_cols=38 Identities=13% Similarity=0.187 Sum_probs=30.1
Q ss_pred chhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhh
Q 001729 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLL 64 (1020)
Q Consensus 27 Pi~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~ll 64 (1020)
.+....++++..+..++.+++.||+|+|||+.+-.+..
T Consensus 6 ~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~ 43 (262)
T TIGR02640 6 AVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVAR 43 (262)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHH
Confidence 34566777888888899999999999999976655443
No 236
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=95.36 E-value=0.0054 Score=68.36 Aligned_cols=25 Identities=40% Similarity=0.990 Sum_probs=23.0
Q ss_pred CCccceeeccccccCCCCCCCCcCc
Q 001729 736 EAPLCVYFINGSCNRGTGCPFSHSL 760 (1020)
Q Consensus 736 ~~~~C~~f~~G~C~~G~~C~f~H~~ 760 (1020)
.+.+|+||+.|.|++|++|+|||..
T Consensus 139 sMkpC~ffLeg~CRF~enCRfSHG~ 163 (486)
T KOG2185|consen 139 SMKPCKFFLEGRCRFGENCRFSHGL 163 (486)
T ss_pred hhccchHhhccccccCcccccccCc
Confidence 5667999999999999999999987
No 237
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.32 E-value=0.018 Score=71.41 Aligned_cols=65 Identities=22% Similarity=0.253 Sum_probs=53.3
Q ss_pred cchhhhHHHHHHHHhhc-cEEEEecCCCCCCcCChhhhhhhc--CCccccccCCceehhhhHHHHHhh
Q 001729 26 LPVMSLREKIVEKVLEN-RVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPRRFAVVAVAKMVAK 90 (1020)
Q Consensus 26 LPi~~~Q~eil~~i~~~-~~vII~apTGSGKTt~ip~~lle~--~~~~IivtqPrrlaa~sva~rva~ 90 (1020)
-.+.+.|.+++..+..+ ..++|.||+|+|||+.+..++... ...+|+++.|+..|+..+.+++..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHh
Confidence 45788999999998876 789999999999997766655432 223899999999999999998876
No 238
>KOG4791 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.30 E-value=0.0052 Score=69.47 Aligned_cols=48 Identities=23% Similarity=0.616 Sum_probs=33.7
Q ss_pred Cccceeecccc-ccCCCCCCCCcCcC---CCCCCccceeccCC-CCCCCCCccCCCC
Q 001729 737 APLCVYFINGS-CNRGTGCPFSHSLQ---AKRPACKFFYSLQG-CRNGDSCIFSHDL 788 (1020)
Q Consensus 737 ~~~C~~f~~G~-C~~G~~C~f~H~~~---~~~~~C~~f~~~g~-C~~g~~C~f~H~~ 788 (1020)
...|+||+.|. |++ -|+|.|..- ....+|.|+ .+++ |.+-. |-|.|..
T Consensus 32 ~t~C~~w~~~~~C~k--~C~YRHSe~~~kr~e~~CYwe-~~p~gC~k~~-CgfRH~~ 84 (667)
T KOG4791|consen 32 ETVCTLWQEGRCCRK--VCRYRHSEIDKKRSEIPCYWE-NQPTGCQKLN-CGFRHNR 84 (667)
T ss_pred cchhhhhhhcCcccc--cccchhhHHhhhcCcccceee-cCCCccCCCc-cccccCC
Confidence 34488888764 554 689988752 234579888 5555 99866 9999954
No 239
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=95.28 E-value=0.0054 Score=67.37 Aligned_cols=127 Identities=16% Similarity=0.110 Sum_probs=66.0
Q ss_pred cchhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhh-hcC-CccccccCCceehhhhHHHHHhhccccccCccccee
Q 001729 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLL-AEN-MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYH 103 (1020)
Q Consensus 26 LPi~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~ll-e~~-~~~IivtqPrrlaa~sva~rva~e~~~~lg~~Vgy~ 103 (1020)
+-++++-.+++..+.=++.-|+...||=|||..+..+.. ... ...|-|+.....+|..=++.+...+. .+|..||+.
T Consensus 74 ~g~~p~~vQll~~l~L~~G~laEm~TGEGKTli~~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y~-~LGlsv~~~ 152 (266)
T PF07517_consen 74 LGLRPYDVQLLGALALHKGRLAEMKTGEGKTLIAALPAALNALQGKGVHVVTSNDYLAKRDAEEMRPFYE-FLGLSVGII 152 (266)
T ss_dssp TS----HHHHHHHHHHHTTSEEEESTTSHHHHHHHHHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHHH-HTT--EEEE
T ss_pred cCCcccHHHHhhhhhcccceeEEecCCCCcHHHHHHHHHHHHHhcCCcEEEeccHHHhhccHHHHHHHHH-HhhhccccC
Confidence 334444444555543333449999999999955444332 222 22344444444555544444443322 466677766
Q ss_pred ccccccc----cccceEEeeechhhhHH-HHHh----ccc--cceeEEEEeeccccccccc
Q 001729 104 IGHSKHL----SERSKIVFKTAGVLLDE-MRDR----GLN--ALKYKVIILDEVHERSVES 153 (1020)
Q Consensus 104 i~~~~~~----~~~t~Iiv~Tpg~Ll~~-l~~~----~l~--l~~~s~IIIDEaHER~l~~ 153 (1020)
....... .-..+|+|+|..-+.-- +++. ... ...+.++||||||...++.
T Consensus 153 ~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~LiDe 213 (266)
T PF07517_consen 153 TSDMSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSILIDE 213 (266)
T ss_dssp ETTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHTTTG
T ss_pred ccccCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEEEec
Confidence 4433211 12468999999876542 3321 111 2378999999999544443
No 240
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.22 E-value=0.039 Score=65.27 Aligned_cols=40 Identities=35% Similarity=0.459 Sum_probs=24.5
Q ss_pred eeEEEEeecccccccccceeehhhhhHhhccCCeEEEEeecccc
Q 001729 137 KYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATAD 180 (1020)
Q Consensus 137 ~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmSATld 180 (1020)
++.++|||||| .+..+....+++.+-. +..++++.-||-+
T Consensus 121 ~~KV~IIDEah--~Ls~~A~NALLKtLEE--Pp~~viFILaTte 160 (484)
T PRK14956 121 KYKVYIIDEVH--MLTDQSFNALLKTLEE--PPAHIVFILATTE 160 (484)
T ss_pred CCEEEEEechh--hcCHHHHHHHHHHhhc--CCCceEEEeecCC
Confidence 78999999999 3444555666666633 2334444445533
No 241
>PRK08116 hypothetical protein; Validated
Probab=95.13 E-value=0.053 Score=60.07 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=14.6
Q ss_pred cEEEEecCCCCCCcCChh
Q 001729 43 RVTLIVGETGCGKSSQVP 60 (1020)
Q Consensus 43 ~~vII~apTGSGKTt~ip 60 (1020)
..+++.|++|+|||+.+.
T Consensus 115 ~gl~l~G~~GtGKThLa~ 132 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAA 132 (268)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 359999999999996443
No 242
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.07 E-value=0.033 Score=62.46 Aligned_cols=130 Identities=18% Similarity=0.328 Sum_probs=74.9
Q ss_pred CcchhhhHHHHHHHHhhc--cEEEEecCCCCCCcCChhhhhhh-----cCCccccccCCceehhhhHHHHHhhccccccC
Q 001729 25 SLPVMSLREKIVEKVLEN--RVTLIVGETGCGKSSQVPQFLLA-----ENMEPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (1020)
Q Consensus 25 ~LPi~~~Q~eil~~i~~~--~~vII~apTGSGKTt~ip~~lle-----~~~~~IivtqPrrlaa~sva~rva~e~~~~lg 97 (1020)
--|....|.-++++++.. .-|.+.|.-|||||......-++ ..+++|+++-|.- .+|
T Consensus 226 i~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~v----------------pvG 289 (436)
T COG1875 226 IRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTV----------------PVG 289 (436)
T ss_pred cCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCc----------------Ccc
Confidence 356777899999999876 46888999999999544333332 3346888887742 355
Q ss_pred cccceeccccc-ccc-------ccceEEe----eechhhhHHHHHhccccc----------eeEEEEeecccccccccce
Q 001729 98 GEVGYHIGHSK-HLS-------ERSKIVF----KTAGVLLDEMRDRGLNAL----------KYKVIILDEVHERSVESDL 155 (1020)
Q Consensus 98 ~~Vgy~i~~~~-~~~-------~~t~Iiv----~Tpg~Ll~~l~~~~l~l~----------~~s~IIIDEaHER~l~~d~ 155 (1020)
..+||--+.+. +.. ++-..++ ++.+.|-..+....+.+. .=..||||||+. +
T Consensus 290 ~dIGfLPG~eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQN------L 363 (436)
T COG1875 290 EDIGFLPGTEEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQN------L 363 (436)
T ss_pred cccCcCCCchhhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhc------c
Confidence 66666543221 111 1111222 234445444443332221 336799999993 2
Q ss_pred eehhhhhHhhc-cCCeEEEEee
Q 001729 156 VLVCVKQLLLK-KNDLRVVLMS 176 (1020)
Q Consensus 156 ll~~lk~ll~~-~~~lkiIlmS 176 (1020)
-...+|.++.+ .+..|||++.
T Consensus 364 TpheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 364 TPHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred CHHHHHHHHHhccCCCEEEEcC
Confidence 22334444433 5677888865
No 243
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.04 E-value=0.046 Score=59.59 Aligned_cols=52 Identities=15% Similarity=0.305 Sum_probs=30.6
Q ss_pred eeEEEEeecccccccccceeehhhhhHhhcc-CCeEEEEeecccchhhhhHHHh
Q 001729 137 KYKVIILDEVHERSVESDLVLVCVKQLLLKK-NDLRVVLMSATADITKYRDYFR 189 (1020)
Q Consensus 137 ~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~-~~lkiIlmSATld~~~~~~~f~ 189 (1020)
++++|||||++... .+++-..++-.++..| .+.+-+++|.-++.+.+.+.++
T Consensus 162 ~~dlLvIDDig~~~-~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~~~g 214 (244)
T PRK07952 162 NVDLLVIDEIGVQT-ESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLG 214 (244)
T ss_pred cCCEEEEeCCCCCC-CCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHHHhC
Confidence 78999999999432 4555444555444433 2234444555556666666654
No 244
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=95.02 E-value=0.016 Score=67.50 Aligned_cols=49 Identities=29% Similarity=0.650 Sum_probs=38.8
Q ss_pred CCccceeeccccccCCCCCCCCcCcCC-----------CCCCccceeccCCCCCCCCCccCCCC
Q 001729 736 EAPLCVYFINGSCNRGTGCPFSHSLQA-----------KRPACKFFYSLQGCRNGDSCIFSHDL 788 (1020)
Q Consensus 736 ~~~~C~~f~~G~C~~G~~C~f~H~~~~-----------~~~~C~~f~~~g~C~~g~~C~f~H~~ 788 (1020)
|.+.|. ++.|.-|-.|+|.|+... ...+|.-| .+|.|..||.|-|.|..
T Consensus 200 Kir~C~---R~~shDwteCPf~HpgEkARRRDPRkyhYs~tpCPef-rkG~C~rGD~CEyaHgv 259 (528)
T KOG1595|consen 200 KIRRCS---RPRSHDWTECPFAHPGEKARRRDPRKYHYSSTPCPEF-RKGSCERGDSCEYAHGV 259 (528)
T ss_pred eecccC---CccCCCcccCCccCCCcccccCCcccccccCccCccc-ccCCCCCCCccccccce
Confidence 555564 357888999999996421 23489999 99999999999999964
No 245
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.00 E-value=0.073 Score=62.27 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=18.2
Q ss_pred cEEEEecCCCCCCcCChhhhhh
Q 001729 43 RVTLIVGETGCGKSSQVPQFLL 64 (1020)
Q Consensus 43 ~~vII~apTGSGKTt~ip~~ll 64 (1020)
.+++|.||+|+|||+.+-.++-
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~ 77 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFE 77 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999987665553
No 246
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.94 E-value=0.021 Score=59.22 Aligned_cols=21 Identities=19% Similarity=0.396 Sum_probs=15.5
Q ss_pred HhhccEEEEecCCCCCCcCCh
Q 001729 39 VLENRVTLIVGETGCGKSSQV 59 (1020)
Q Consensus 39 i~~~~~vII~apTGSGKTt~i 59 (1020)
+.+++++++.|++|+|||...
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa 64 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLA 64 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHH
Confidence 456789999999999999543
No 247
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.89 E-value=0.022 Score=62.67 Aligned_cols=27 Identities=19% Similarity=0.405 Sum_probs=19.5
Q ss_pred hhhhHHHHHhccccc--eeEEEEeecccc
Q 001729 122 GVLLDEMRDRGLNAL--KYKVIILDEVHE 148 (1020)
Q Consensus 122 g~Ll~~l~~~~l~l~--~~s~IIIDEaHE 148 (1020)
.+|+++++....+.. .-+.|.|||++.
T Consensus 145 NillkLlqaadydV~rAerGIIyIDEIDK 173 (408)
T COG1219 145 NILLKLLQAADYDVERAERGIIYIDEIDK 173 (408)
T ss_pred HHHHHHHHHcccCHHHHhCCeEEEechhh
Confidence 367888876544433 678999999993
No 248
>PF05729 NACHT: NACHT domain
Probab=94.87 E-value=0.029 Score=56.42 Aligned_cols=51 Identities=20% Similarity=0.333 Sum_probs=32.6
Q ss_pred EEEEeecccccccccce-----eehhhhhHhhc--cCCeEEEEeecccchhhhhHHHh
Q 001729 139 KVIILDEVHERSVESDL-----VLVCVKQLLLK--KNDLRVVLMSATADITKYRDYFR 189 (1020)
Q Consensus 139 s~IIIDEaHER~l~~d~-----ll~~lk~ll~~--~~~lkiIlmSATld~~~~~~~f~ 189 (1020)
-+||||=++|-....+. ....++.++.. .++.++++.|.+-....+.+.+.
T Consensus 83 ~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~ 140 (166)
T PF05729_consen 83 VLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLK 140 (166)
T ss_pred eEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcC
Confidence 45899999875443322 44455555555 67899999888765545555554
No 249
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.86 E-value=0.058 Score=65.10 Aligned_cols=38 Identities=24% Similarity=0.417 Sum_probs=24.3
Q ss_pred eeEEEEeecccccccccceeehhhhhHhhccCCeEEEEee
Q 001729 137 KYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (1020)
Q Consensus 137 ~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmS 176 (1020)
++.++||||||. +..+....++|.+-...+..++|+.+
T Consensus 119 ~~kV~iIDE~~~--ls~~a~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 119 RFKVYLIDEVHM--LSGHSFNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CcEEEEEEChHh--cCHHHHHHHHHHHhccCCCeEEEEEE
Confidence 789999999993 33344455666554444556666644
No 250
>PRK08084 DNA replication initiation factor; Provisional
Probab=94.84 E-value=0.029 Score=60.93 Aligned_cols=19 Identities=16% Similarity=0.293 Sum_probs=15.7
Q ss_pred ccEEEEecCCCCCCcCChh
Q 001729 42 NRVTLIVGETGCGKSSQVP 60 (1020)
Q Consensus 42 ~~~vII~apTGSGKTt~ip 60 (1020)
...+++.||+|+|||+.+-
T Consensus 45 ~~~l~l~Gp~G~GKThLl~ 63 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLH 63 (235)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3689999999999997543
No 251
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.81 E-value=0.028 Score=70.51 Aligned_cols=45 Identities=27% Similarity=0.383 Sum_probs=28.7
Q ss_pred eeEEEEeecccccccccceeehhhhhHhhccCCeEEEEeecccchhhhh
Q 001729 137 KYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADITKYR 185 (1020)
Q Consensus 137 ~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmSATld~~~~~ 185 (1020)
++.++||||||. +..+....++|.+-.....+++|+. |-+..++.
T Consensus 119 k~KViIIDEAh~--LT~eAqNALLKtLEEPP~~vrFILa--TTe~~kLl 163 (944)
T PRK14949 119 RFKVYLIDEVHM--LSRSSFNALLKTLEEPPEHVKFLLA--TTDPQKLP 163 (944)
T ss_pred CcEEEEEechHh--cCHHHHHHHHHHHhccCCCeEEEEE--CCCchhch
Confidence 789999999993 3445556666666544455666664 54444443
No 252
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=94.74 E-value=0.012 Score=65.95 Aligned_cols=117 Identities=18% Similarity=0.142 Sum_probs=68.0
Q ss_pred hhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhh---hhhcC---CccccccCCceehhhhHHHHHhhccccccCcccc
Q 001729 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQF---LLAEN---MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (1020)
Q Consensus 28 i~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~---lle~~---~~~IivtqPrrlaa~sva~rva~e~~~~lg~~Vg 101 (1020)
+++-|.+++.. .++.++|.|..|||||+.+..- ++..+ ..+|+++.+++.+|..+..|+...++........
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~~~~ 78 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEEEQQESSD 78 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCHCCTT
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCcccccccc
Confidence 35678888887 6788999999999999766543 33333 2479999999999999999988754332110000
Q ss_pred eeccccccccccceEEeeechhhhHHHHHhcccc--ceeEEEEeeccc
Q 001729 102 YHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNA--LKYKVIILDEVH 147 (1020)
Q Consensus 102 y~i~~~~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l--~~~s~IIIDEaH 147 (1020)
-. ...........+.|+|-..+...+....... .....-|+|+..
T Consensus 79 ~~-~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 79 NE-RLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp -H-HHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred cc-cccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 00 0011111235677888766655544321111 133455666665
No 253
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.74 E-value=0.041 Score=58.94 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=17.6
Q ss_pred hccEEEEecCCCCCCcCChhhh
Q 001729 41 ENRVTLIVGETGCGKSSQVPQF 62 (1020)
Q Consensus 41 ~~~~vII~apTGSGKTt~ip~~ 62 (1020)
.+..+++.||+|+|||+.+-.+
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~ 58 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAA 58 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHH
Confidence 4578999999999999765443
No 254
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=94.67 E-value=0.062 Score=57.46 Aligned_cols=102 Identities=17% Similarity=0.286 Sum_probs=62.1
Q ss_pred cCcchhhhHHHHHHHHhh---ccEEEEecCCCCCCcCChh-hhh--hhcCCccccccCCceehhhhHHHHHhhccccccC
Q 001729 24 SSLPVMSLREKIVEKVLE---NRVTLIVGETGCGKSSQVP-QFL--LAENMEPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (1020)
Q Consensus 24 ~~LPi~~~Q~eil~~i~~---~~~vII~apTGSGKTt~ip-~~l--le~~~~~IivtqPrrlaa~sva~rva~e~~~~lg 97 (1020)
.++=|++.|.++...+.+ +++.+...-.|.|||+.+. ... +.++.+-+.++.|..+ ..+..+.+...++.-++
T Consensus 20 ~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~~LvrviVpk~L-l~q~~~~L~~~lg~l~~ 98 (229)
T PF12340_consen 20 SNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIVPMLALALADGSRLVRVIVPKAL-LEQMRQMLRSRLGGLLN 98 (229)
T ss_pred cCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHHHHHHHHHcCCCcEEEEEcCHHH-HHHHHHHHHHHHHHHhC
Confidence 457789999999999875 4789999999999997653 332 2334344445556544 34444444443332233
Q ss_pred cccceeccccccc-----------------cccceEEeeechhhhHH
Q 001729 98 GEVGYHIGHSKHL-----------------SERSKIVFKTAGVLLDE 127 (1020)
Q Consensus 98 ~~Vgy~i~~~~~~-----------------~~~t~Iiv~Tpg~Ll~~ 127 (1020)
..| |.+.|+... .....|+++||+.++..
T Consensus 99 r~i-~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf 144 (229)
T PF12340_consen 99 RRI-YHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSF 144 (229)
T ss_pred Cee-EEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHH
Confidence 221 223333221 13457999999988654
No 255
>PHA00729 NTP-binding motif containing protein
Probab=94.65 E-value=0.058 Score=57.74 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=18.3
Q ss_pred HHHHHhhc--cEEEEecCCCCCCcCCh
Q 001729 35 IVEKVLEN--RVTLIVGETGCGKSSQV 59 (1020)
Q Consensus 35 il~~i~~~--~~vII~apTGSGKTt~i 59 (1020)
+++.+..+ .+++|.|++|+|||+..
T Consensus 8 ~~~~l~~~~f~nIlItG~pGvGKT~LA 34 (226)
T PHA00729 8 IVSAYNNNGFVSAVIFGKQGSGKTTYA 34 (226)
T ss_pred HHHHHhcCCeEEEEEECCCCCCHHHHH
Confidence 44444433 47999999999999744
No 256
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.63 E-value=0.035 Score=61.23 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=19.0
Q ss_pred cEEEEecCCCCCCcCChhhhhhh
Q 001729 43 RVTLIVGETGCGKSSQVPQFLLA 65 (1020)
Q Consensus 43 ~~vII~apTGSGKTt~ip~~lle 65 (1020)
..++|.||+|+||||.+-.++.+
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~ 66 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKR 66 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHh
Confidence 47999999999999877766544
No 257
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.62 E-value=0.062 Score=65.46 Aligned_cols=38 Identities=24% Similarity=0.429 Sum_probs=24.9
Q ss_pred eeEEEEeecccccccccceeehhhhhHhhccCCeEEEEee
Q 001729 137 KYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (1020)
Q Consensus 137 ~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmS 176 (1020)
+++++||||+|. ++..-...+||.+-.-..+.++|+.|
T Consensus 124 r~KViIIDEah~--Ls~~AaNALLKTLEEPP~~v~FILaT 161 (700)
T PRK12323 124 RFKVYMIDEVHM--LTNHAFNAMLKTLEEPPEHVKFILAT 161 (700)
T ss_pred CceEEEEEChHh--cCHHHHHHHHHhhccCCCCceEEEEe
Confidence 789999999993 33344556666654444556666654
No 258
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=94.58 E-value=0.071 Score=66.24 Aligned_cols=118 Identities=20% Similarity=0.216 Sum_probs=67.4
Q ss_pred HHHHHhhhhhccCCccccccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc-eEEEEeccc
Q 001729 259 KLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIA 337 (1020)
Q Consensus 259 ~li~~ll~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVLVATnia 337 (1020)
..+.+-+...+.. +++|||-..+.+..+.+.+.|.+.+ +.-..|.+.-...+.. +-...+.. -|=||||+|
T Consensus 416 ~Aiv~~I~~~~~~----gqPvLvgT~sie~SE~ls~~L~~~~--i~h~VLNAk~h~~EA~--Iia~AG~~gaVTiATNMA 487 (822)
T COG0653 416 KAIVEDIKERHEK----GQPVLVGTVSIEKSELLSKLLRKAG--IPHNVLNAKNHAREAE--IIAQAGQPGAVTIATNMA 487 (822)
T ss_pred HHHHHHHHHHHhc----CCCEEEcCcceecchhHHHHHHhcC--CCceeeccccHHHHHH--HHhhcCCCCccccccccc
Confidence 3333444444443 4699999999999999999998433 3333444433333322 22333334 899999999
Q ss_pred ccccccccee---EEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc-cCCee
Q 001729 338 ESSVTIPKVA---YVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQV 394 (1020)
Q Consensus 338 e~GIdIp~V~---~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c 394 (1020)
.+|-||-=-. .|...|---... ....+ |+--=.|-.||+||. -||..
T Consensus 488 GRGTDIkLg~~~~~V~~lGGL~VIg---TERhE-------SRRIDnQLRGRsGRQGDpG~S 538 (822)
T COG0653 488 GRGTDIKLGGNPEFVMELGGLHVIG---TERHE-------SRRIDNQLRGRAGRQGDPGSS 538 (822)
T ss_pred cCCcccccCCCHHHHHHhCCcEEEe---cccch-------hhHHHHHhhcccccCCCcchh
Confidence 9999985222 233332111100 00001 222226999999999 46653
No 259
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.58 E-value=0.069 Score=65.18 Aligned_cols=38 Identities=21% Similarity=0.398 Sum_probs=22.9
Q ss_pred eeEEEEeecccccccccceeehhhhhHhhccCCeEEEEee
Q 001729 137 KYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (1020)
Q Consensus 137 ~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmS 176 (1020)
++.++||||||. +..+....++|.+-...+...+|+.+
T Consensus 118 k~KV~IIDEVh~--LS~~A~NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 118 RFKVYLIDEVHM--LSTHSFNALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred CcEEEEEechHh--cCHHHHHHHHHHHhcCCCCcEEEEEE
Confidence 789999999993 33333444555444334455666543
No 260
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.57 E-value=0.069 Score=63.78 Aligned_cols=39 Identities=28% Similarity=0.402 Sum_probs=24.2
Q ss_pred ceeEEEEeecccccccccceeehhhhhHhhccCCeEEEEee
Q 001729 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (1020)
Q Consensus 136 ~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmS 176 (1020)
.++.++||||+|. +..+-...++|.+-...+...+|+.+
T Consensus 115 ~~~KVvIIDEah~--Ls~~A~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 115 SKFKVYIIDEVHM--LSNSAFNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred CCceEEEEeChHh--CCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 3899999999993 33333445555554444556666544
No 261
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=94.52 E-value=0.03 Score=61.45 Aligned_cols=36 Identities=28% Similarity=0.325 Sum_probs=26.7
Q ss_pred hhHHHHHHHHhh------ccEEEEecCCCCCCcCChhhhhhh
Q 001729 30 SLREKIVEKVLE------NRVTLIVGETGCGKSSQVPQFLLA 65 (1020)
Q Consensus 30 ~~Q~eil~~i~~------~~~vII~apTGSGKTt~ip~~lle 65 (1020)
..|+.++.++.+ ..+.+..||.|+|||+.+..+..+
T Consensus 39 ~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~ 80 (346)
T KOG0989|consen 39 AGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARA 80 (346)
T ss_pred cchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHH
Confidence 457777776642 368999999999999776666544
No 262
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.50 E-value=0.033 Score=65.40 Aligned_cols=45 Identities=22% Similarity=0.348 Sum_probs=33.5
Q ss_pred ccCcchhhhHHHHHHHHhh--ccEEEEecCCCCCCcCChhhhhhhcC
Q 001729 23 FSSLPVMSLREKIVEKVLE--NRVTLIVGETGCGKSSQVPQFLLAEN 67 (1020)
Q Consensus 23 r~~LPi~~~Q~eil~~i~~--~~~vII~apTGSGKTt~ip~~lle~~ 67 (1020)
..+|...+.+.+.+..+.+ +.-+++.|||||||||.+-.++-+..
T Consensus 237 l~~Lg~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~~L~~ln 283 (500)
T COG2804 237 LEKLGMSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTLYAALSELN 283 (500)
T ss_pred HHHhCCCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHHHhc
Confidence 3557777778777777654 46789999999999987766665543
No 263
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=94.48 E-value=0.062 Score=61.86 Aligned_cols=117 Identities=22% Similarity=0.342 Sum_probs=0.0
Q ss_pred cchhhhHHHHHHHHhhccE-----EEEecCCCCCCcCChhhhhhhcCCc--cccccCCceehhhhHHHHHhhccccccCc
Q 001729 26 LPVMSLREKIVEKVLENRV-----TLIVGETGCGKSSQVPQFLLAENME--PILCTQPRRFAVVAVAKMVAKGRNCELGG 98 (1020)
Q Consensus 26 LPi~~~Q~eil~~i~~~~~-----vII~apTGSGKTt~ip~~lle~~~~--~IivtqPrrlaa~sva~rva~e~~~~lg~ 98 (1020)
+|+-++|.+.+..+..... -|+.-+-|-|||.|...+++....+ .+++.++ +|.+|....+..... |.
T Consensus 183 i~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~~ra~tLVvaP~--VAlmQW~nEI~~~T~---gs 257 (791)
T KOG1002|consen 183 IPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEVDRAPTLVVAPT--VALMQWKNEIERHTS---GS 257 (791)
T ss_pred ecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhccccCCeeEEccH--HHHHHHHHHHHHhcc---Cc
Q ss_pred ccceeccccccccc-----cceEEeeechhhhHHHHHhc---------------cccceeEEEEeeccc
Q 001729 99 EVGYHIGHSKHLSE-----RSKIVFKTAGVLLDEMRDRG---------------LNALKYKVIILDEVH 147 (1020)
Q Consensus 99 ~Vgy~i~~~~~~~~-----~t~Iiv~Tpg~Ll~~l~~~~---------------l~l~~~s~IIIDEaH 147 (1020)
.--|...+.++... +.+++.+|..++-...+... +.--++--||+||||
T Consensus 258 lkv~~YhG~~R~~nikel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH 326 (791)
T KOG1002|consen 258 LKVYIYHGAKRDKNIKELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAH 326 (791)
T ss_pred eEEEEEecccccCCHHHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhc
No 264
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=94.48 E-value=0.022 Score=55.06 Aligned_cols=17 Identities=29% Similarity=0.524 Sum_probs=13.9
Q ss_pred EEEecCCCCCCcCChhh
Q 001729 45 TLIVGETGCGKSSQVPQ 61 (1020)
Q Consensus 45 vII~apTGSGKTt~ip~ 61 (1020)
+++.||.|+|||+.+-.
T Consensus 1 ill~G~~G~GKT~l~~~ 17 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARA 17 (132)
T ss_dssp EEEESSTTSSHHHHHHH
T ss_pred CEEECcCCCCeeHHHHH
Confidence 68999999999975533
No 265
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.47 E-value=0.039 Score=60.88 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=15.2
Q ss_pred cEEEEecCCCCCCcCChh
Q 001729 43 RVTLIVGETGCGKSSQVP 60 (1020)
Q Consensus 43 ~~vII~apTGSGKTt~ip 60 (1020)
.++++.||+|+|||+.+-
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 478999999999997553
No 266
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=94.45 E-value=0.09 Score=65.46 Aligned_cols=40 Identities=33% Similarity=0.430 Sum_probs=25.0
Q ss_pred cCcchhhhHHHHHHHHhh--------ccEEEEecCCCCCCcCChhhhh
Q 001729 24 SSLPVMSLREKIVEKVLE--------NRVTLIVGETGCGKSSQVPQFL 63 (1020)
Q Consensus 24 ~~LPi~~~Q~eil~~i~~--------~~~vII~apTGSGKTt~ip~~l 63 (1020)
..||=++-|.+-|..++. +..+.|.|+||+|||+.+-..+
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VL 802 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVI 802 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHH
Confidence 457766655554444331 1235699999999997654443
No 267
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.35 E-value=0.14 Score=63.46 Aligned_cols=135 Identities=20% Similarity=0.211 Sum_probs=81.6
Q ss_pred CcchhhhHHHHHHHHh-----hccEEEEecCCCCCCcCChhhh---hhhcC-CccccccCCceehhhhHHHHHhhccccc
Q 001729 25 SLPVMSLREKIVEKVL-----ENRVTLIVGETGCGKSSQVPQF---LLAEN-MEPILCTQPRRFAVVAVAKMVAKGRNCE 95 (1020)
Q Consensus 25 ~LPi~~~Q~eil~~i~-----~~~~vII~apTGSGKTt~ip~~---lle~~-~~~IivtqPrrlaa~sva~rva~e~~~~ 95 (1020)
.+..++-|.++++.+. ..+.++|.|.-|=|||.++-.. +.... ...|+||.|+..+++++.+..-+.+. .
T Consensus 209 ~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~~l~-~ 287 (758)
T COG1444 209 ELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGKGLE-F 287 (758)
T ss_pred hhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHhHH-H
Confidence 4566777877666653 2348999999999999665522 22222 34899999999998888776544221 1
Q ss_pred cCc--ccceecccc-c-cccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhccCCeE
Q 001729 96 LGG--EVGYHIGHS-K-HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLR 171 (1020)
Q Consensus 96 lg~--~Vgy~i~~~-~-~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lk 171 (1020)
+|- .|.+....+ . ...+...|-|..|.... + .-++||||||= .+-+.+++++.... +
T Consensus 288 lg~~~~v~~d~~g~~~~~~~~~~~i~y~~P~~a~-~---------~~DllvVDEAA------aIplplL~~l~~~~---~ 348 (758)
T COG1444 288 LGYKRKVAPDALGEIREVSGDGFRIEYVPPDDAQ-E---------EADLLVVDEAA------AIPLPLLHKLLRRF---P 348 (758)
T ss_pred hCCccccccccccceeeecCCceeEEeeCcchhc-c---------cCCEEEEehhh------cCChHHHHHHHhhc---C
Confidence 111 111111010 0 11233457777776553 1 24789999997 23345566665443 4
Q ss_pred EEEeeccc
Q 001729 172 VVLMSATA 179 (1020)
Q Consensus 172 iIlmSATl 179 (1020)
-++||.|+
T Consensus 349 rv~~sTTI 356 (758)
T COG1444 349 RVLFSTTI 356 (758)
T ss_pred ceEEEeee
Confidence 68899996
No 268
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=94.34 E-value=0.088 Score=62.95 Aligned_cols=112 Identities=18% Similarity=0.220 Sum_probs=91.2
Q ss_pred cccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc--eEEEEeccccccccccceeEEeecc
Q 001729 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR--KVILATNIAESSVTIPKVAYVIDSC 353 (1020)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr--kVLVATniae~GIdIp~V~~VId~G 353 (1020)
+.++|+|..-.+.++-+-++|. ..++.-+-|.|.....+|..+.+.|.... -.|++|-..+-||++-..+.||.
T Consensus 1044 gHRvL~yfQMTkM~dl~EdYl~--yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViF-- 1119 (1185)
T KOG0388|consen 1044 GHRVLMYFQMTKMIDLIEDYLV--YRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIF-- 1119 (1185)
T ss_pred CceEEehhHHHHHHHHHHHHHH--hhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEEE--
Confidence 3578888887777777777776 45578888999999999999999997654 67899999999999999999997
Q ss_pred cceeeeeeccccccceeeEEeehhHHHHhcCCCCcccCCeeEEeechhhcc
Q 001729 354 RSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFG 404 (1020)
Q Consensus 354 ~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~c~rLys~~~~~ 404 (1020)
||..-+... -.+++-|+-|-|.++.-.+|||.++...+
T Consensus 1120 ------YdSDWNPT~-------D~QAMDRAHRLGQTrdvtvyrl~~rgTvE 1157 (1185)
T KOG0388|consen 1120 ------YDSDWNPTA-------DQQAMDRAHRLGQTRDVTVYRLITRGTVE 1157 (1185)
T ss_pred ------ecCCCCcch-------hhHHHHHHHhccCccceeeeeecccccHH
Confidence 887665433 35667888888888999999999986543
No 269
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=94.33 E-value=0.11 Score=61.93 Aligned_cols=17 Identities=29% Similarity=0.477 Sum_probs=14.4
Q ss_pred cEEEEecCCCCCCcCCh
Q 001729 43 RVTLIVGETGCGKSSQV 59 (1020)
Q Consensus 43 ~~vII~apTGSGKTt~i 59 (1020)
+.+++.||+|+|||+.+
T Consensus 149 ~~l~l~G~~G~GKThL~ 165 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLL 165 (450)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45899999999999644
No 270
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=94.20 E-value=0.15 Score=62.25 Aligned_cols=140 Identities=13% Similarity=0.138 Sum_probs=80.4
Q ss_pred hccEEEEecCCCCCCcCChhhhh---hhcCCccccccCCceehhhhHHHHHhhccc---c-----ccCccccee-----c
Q 001729 41 ENRVTLIVGETGCGKSSQVPQFL---LAENMEPILCTQPRRFAVVAVAKMVAKGRN---C-----ELGGEVGYH-----I 104 (1020)
Q Consensus 41 ~~~~vII~apTGSGKTt~ip~~l---le~~~~~IivtqPrrlaa~sva~rva~e~~---~-----~lg~~Vgy~-----i 104 (1020)
+.+-.++.+|=|.|||+.+-.++ +.....+|++|.|+.-.+.++.+++...+. . ..+..+... +
T Consensus 186 kq~~tV~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~~fp~~~~iv~vkgg~E~I 265 (752)
T PHA03333 186 GKCYTAATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVETVVHAYQHKPWFPEEFKIVTLKGTDENL 265 (752)
T ss_pred hhcceEEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHHHHHHHhccccccCCCceEEEeeCCeeEE
Confidence 44778889999999997655332 221234799999998888888777655332 0 111111111 0
Q ss_pred cccc--ccc-ccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhccCCeEEEEeecccch
Q 001729 105 GHSK--HLS-ERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADI 181 (1020)
Q Consensus 105 ~~~~--~~~-~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmSATld~ 181 (1020)
.+.. ... ..+.|.|++.+ .+...-..+++||||||+. +..+.+..++--+.. .+.++|++|.+-+.
T Consensus 266 ~f~~p~gak~G~sti~F~Ars-------~~s~RG~~~DLLIVDEAAf--I~~~~l~aIlP~l~~--~~~k~IiISS~~~~ 334 (752)
T PHA03333 266 EYISDPAAKEGKTTAHFLASS-------PNAARGQNPDLVIVDEAAF--VNPGALLSVLPLMAV--KGTKQIHISSPVDA 334 (752)
T ss_pred EEecCcccccCcceeEEeccc-------CCCcCCCCCCEEEEECccc--CCHHHHHHHHHHHcc--CCCceEEEeCCCCc
Confidence 0000 001 11445554332 1111222679999999993 333444443333322 36789999999888
Q ss_pred hhhhHHHhhc
Q 001729 182 TKYRDYFRDL 191 (1020)
Q Consensus 182 ~~~~~~f~~~ 191 (1020)
+.+..++.++
T Consensus 335 ~s~tS~L~nL 344 (752)
T PHA03333 335 DSWISRVGEV 344 (752)
T ss_pred chHHHHhhhh
Confidence 8888777764
No 271
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=94.13 E-value=0.14 Score=62.84 Aligned_cols=39 Identities=26% Similarity=0.374 Sum_probs=24.6
Q ss_pred ceeEEEEeecccccccccceeehhhhhHhhccCCeEEEEee
Q 001729 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (1020)
Q Consensus 136 ~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmS 176 (1020)
.++.+|||||+|.. ..+-...++|.+-...+...+|+.+
T Consensus 131 a~~KVvIIDEad~L--s~~a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 131 ARYKVYIIDEVHML--STAAFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred CCcEEEEEEChHhC--CHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 37899999999942 3333444555554445566777654
No 272
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.11 E-value=0.11 Score=57.50 Aligned_cols=125 Identities=12% Similarity=0.214 Sum_probs=63.8
Q ss_pred ccEEEEecCCCCCCcCChhhhhhh---cCCc-cccccCCceehhhhHHHHHhhccccccCcccceeccccccccccceEE
Q 001729 42 NRVTLIVGETGCGKSSQVPQFLLA---ENME-PILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIV 117 (1020)
Q Consensus 42 ~~~vII~apTGSGKTt~ip~~lle---~~~~-~IivtqPrrlaa~sva~rva~e~~~~lg~~Vgy~i~~~~~~~~~t~Ii 117 (1020)
++.+.++|++|+||||.+..+... .+.. .++-+-+.|+.+....+..+...+ +. +.
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~--------~~------------~~ 134 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIG--------FE------------VI 134 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcC--------ce------------EE
Confidence 378999999999999866554332 1222 233333555444333222222221 11 11
Q ss_pred e-eechhhhHHHHHhccccceeEEEEeeccccccccc-ceeehhhhhHhhccCCeEEEEeecccchhhhhHHH
Q 001729 118 F-KTAGVLLDEMRDRGLNALKYKVIILDEVHERSVES-DLVLVCVKQLLLKKNDLRVVLMSATADITKYRDYF 188 (1020)
Q Consensus 118 v-~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~-d~ll~~lk~ll~~~~~lkiIlmSATld~~~~~~~f 188 (1020)
. .++..+.+.+..-. ...++++||||-+= |.... +.+..+.+.+....++..++++|||...+...+..
T Consensus 135 ~~~~~~~l~~~l~~l~-~~~~~D~ViIDt~G-r~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~ 205 (270)
T PRK06731 135 AVRDEAAMTRALTYFK-EEARVDYILIDTAG-KNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEII 205 (270)
T ss_pred ecCCHHHHHHHHHHHH-hcCCCCEEEEECCC-CCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHH
Confidence 1 23444433332110 11268999999997 44332 22333333222335666788899997554444433
No 273
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.11 E-value=0.12 Score=58.70 Aligned_cols=123 Identities=18% Similarity=0.240 Sum_probs=64.7
Q ss_pred ccEEEEecCCCCCCcCChhhhhh---hcCCcccccc-CCceehhhhHHHHHhhccccccCcccceeccccccccccceEE
Q 001729 42 NRVTLIVGETGCGKSSQVPQFLL---AENMEPILCT-QPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIV 117 (1020)
Q Consensus 42 ~~~vII~apTGSGKTt~ip~~ll---e~~~~~Iivt-qPrrlaa~sva~rva~e~~~~lg~~Vgy~i~~~~~~~~~t~Ii 117 (1020)
++++.++||+|+||||.+..+.. ..+.+..++. -+.|.+|.......+...+. ++.. ... ..++
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i------~~~~-~~~--~~dp--- 181 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGV------PVIA-QKE--GADP--- 181 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCc------eEEE-eCC--CCCH---
Confidence 46889999999999987665533 2233333333 34455554444444444332 1110 000 0000
Q ss_pred eeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhh-------ccCCeEEEEeecccchh
Q 001729 118 FKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLL-------KKNDLRVVLMSATADIT 182 (1020)
Q Consensus 118 v~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~-------~~~~lkiIlmSATld~~ 182 (1020)
.......+... ...++++||||=+- |....+-++.-++.+.. ..++-.+++++||...+
T Consensus 182 ---a~~v~~~l~~~--~~~~~D~ViIDTaG-r~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~ 247 (318)
T PRK10416 182 ---ASVAFDAIQAA--KARGIDVLIIDTAG-RLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQN 247 (318)
T ss_pred ---HHHHHHHHHHH--HhCCCCEEEEeCCC-CCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChH
Confidence 01111212211 12379999999998 65555554444444432 34667899999996443
No 274
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.11 E-value=0.085 Score=67.01 Aligned_cols=39 Identities=23% Similarity=0.368 Sum_probs=25.0
Q ss_pred ceeEEEEeecccccccccceeehhhhhHhhccCCeEEEEee
Q 001729 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (1020)
Q Consensus 136 ~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmS 176 (1020)
.++.++||||+|. +..+-...++|.+-.....+.+|+.+
T Consensus 119 ~~~KV~IIDEad~--lt~~a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHM--VTPQGFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhh--cCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 3899999999993 33344445555555445556666654
No 275
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.10 E-value=0.087 Score=62.70 Aligned_cols=123 Identities=17% Similarity=0.187 Sum_probs=65.3
Q ss_pred hccEEEEecCCCCCCcCChhhhhh----hcCCcc--ccccCCceehhhhHHHHHhhccccccCcccceeccccccccccc
Q 001729 41 ENRVTLIVGETGCGKSSQVPQFLL----AENMEP--ILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERS 114 (1020)
Q Consensus 41 ~~~~vII~apTGSGKTt~ip~~ll----e~~~~~--IivtqPrrlaa~sva~rva~e~~~~lg~~Vgy~i~~~~~~~~~t 114 (1020)
.++++.++||||+||||.+..+.. ..+..+ ++-+-+-|+.+....+.+++.++..+.. .
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~--~------------- 319 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHA--V------------- 319 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeec--c-------------
Confidence 357899999999999988777653 233322 3334455677766666666655432110 0
Q ss_pred eEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhc-cCCeEEEEeecccchhhhhHH
Q 001729 115 KIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLK-KNDLRVVLMSATADITKYRDY 187 (1020)
Q Consensus 115 ~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~-~~~lkiIlmSATld~~~~~~~ 187 (1020)
-+..-+...+. .+.++++++||.+= |+.....+...+..+... .+.-.++.++||.....+.+.
T Consensus 320 ----~~~~Dl~~aL~----~L~d~d~VLIDTaG-r~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i 384 (484)
T PRK06995 320 ----KDAADLRLALS----ELRNKHIVLIDTIG-MSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEV 384 (484)
T ss_pred ----CCchhHHHHHH----hccCCCeEEeCCCC-cChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHH
Confidence 00111111111 23367899999976 443222122222222111 133378889999765555443
No 276
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.09 E-value=0.071 Score=65.63 Aligned_cols=38 Identities=24% Similarity=0.349 Sum_probs=24.6
Q ss_pred ceeEEEEeecccccccccceeehhhhhHhhccCCeEEEEe
Q 001729 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLM 175 (1020)
Q Consensus 136 ~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlm 175 (1020)
.++.++||||||. +..+-...++|.+-.-.+..++|+.
T Consensus 118 g~~KV~IIDEah~--Ls~~a~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHM--LSRHSFNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHh--CCHHHHHHHHHHHHcCCCCeEEEEe
Confidence 3789999999993 3444556667755444445555554
No 277
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.06 E-value=0.053 Score=60.59 Aligned_cols=52 Identities=27% Similarity=0.363 Sum_probs=31.0
Q ss_pred ccEEEEecCCCCCCcCChhhhhhh---c-C-Cc-cccccCCceehhhhHHHHHhhccc
Q 001729 42 NRVTLIVGETGCGKSSQVPQFLLA---E-N-ME-PILCTQPRRFAVVAVAKMVAKGRN 93 (1020)
Q Consensus 42 ~~~vII~apTGSGKTt~ip~~lle---~-~-~~-~IivtqPrrlaa~sva~rva~e~~ 93 (1020)
+++++++||||+||||.+..+... . + .. .++-+-|-|..+.......+..++
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~ 251 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILG 251 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhC
Confidence 458899999999999877666532 2 3 22 233344445555544444444333
No 278
>PRK06921 hypothetical protein; Provisional
Probab=94.02 E-value=0.1 Score=57.73 Aligned_cols=20 Identities=20% Similarity=0.498 Sum_probs=16.4
Q ss_pred hccEEEEecCCCCCCcCChh
Q 001729 41 ENRVTLIVGETGCGKSSQVP 60 (1020)
Q Consensus 41 ~~~~vII~apTGSGKTt~ip 60 (1020)
.+..+++.|+||+|||+.+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~ 135 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLT 135 (266)
T ss_pred CCCeEEEECCCCCcHHHHHH
Confidence 35789999999999996443
No 279
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=93.96 E-value=0.081 Score=62.47 Aligned_cols=118 Identities=17% Similarity=0.237 Sum_probs=61.7
Q ss_pred cEEEEecCCCCCCcCChhhhhh---hcCCcc-ccccCCceehhhhHHHHHhhccccccCcccceeccccccccccceEEe
Q 001729 43 RVTLIVGETGCGKSSQVPQFLL---AENMEP-ILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVF 118 (1020)
Q Consensus 43 ~~vII~apTGSGKTt~ip~~ll---e~~~~~-IivtqPrrlaa~sva~rva~e~~~~lg~~Vgy~i~~~~~~~~~t~Iiv 118 (1020)
.+++++|++|+||||.+..+.. +.+.+. ++.+-+.|.+|....+.++...+.++- . .. ...+
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~-----~--~~----~~~d--- 161 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFY-----G--DP----DNKD--- 161 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEE-----e--cC----CccC---
Confidence 5788999999999987665543 334333 334445566655555555554433210 0 00 0000
Q ss_pred eechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhh-ccCCeEEEEeecccc
Q 001729 119 KTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLL-KKNDLRVVLMSATAD 180 (1020)
Q Consensus 119 ~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~-~~~~lkiIlmSATld 180 (1020)
....+.+.+.. ...+++||||.+- |....+-++.-++.+.. ..++.-+++++||..
T Consensus 162 -~~~i~~~al~~----~~~~DvVIIDTAG-r~~~d~~lm~El~~l~~~~~pdevlLVvda~~g 218 (437)
T PRK00771 162 -AVEIAKEGLEK----FKKADVIIVDTAG-RHALEEDLIEEMKEIKEAVKPDEVLLVIDATIG 218 (437)
T ss_pred -HHHHHHHHHHH----hhcCCEEEEECCC-cccchHHHHHHHHHHHHHhcccceeEEEecccc
Confidence 01122222222 1245899999996 33333333333333332 356778888898863
No 280
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.96 E-value=0.12 Score=62.70 Aligned_cols=39 Identities=26% Similarity=0.356 Sum_probs=24.4
Q ss_pred ceeEEEEeecccccccccceeehhhhhHhhccCCeEEEEee
Q 001729 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (1020)
Q Consensus 136 ~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmS 176 (1020)
.++.++||||+|.. ..+-...++|.+-...+...+|+.+
T Consensus 118 ~~~kVvIIDEad~l--s~~a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 118 GRFKVYIIDEVHML--SKSAFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred CCceEEEEcCcccC--CHHHHHHHHHHHhCCCCCEEEEEEe
Confidence 37899999999942 2223344566655444566666654
No 281
>PRK09183 transposase/IS protein; Provisional
Probab=93.91 E-value=0.097 Score=57.71 Aligned_cols=24 Identities=21% Similarity=0.439 Sum_probs=19.7
Q ss_pred HhhccEEEEecCCCCCCcCChhhh
Q 001729 39 VLENRVTLIVGETGCGKSSQVPQF 62 (1020)
Q Consensus 39 i~~~~~vII~apTGSGKTt~ip~~ 62 (1020)
+..+.++++.||+|+|||+....+
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al 122 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIAL 122 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHH
Confidence 567889999999999999755444
No 282
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=93.83 E-value=0.17 Score=61.67 Aligned_cols=17 Identities=35% Similarity=0.593 Sum_probs=14.0
Q ss_pred cEEEEecCCCCCCcCCh
Q 001729 43 RVTLIVGETGCGKSSQV 59 (1020)
Q Consensus 43 ~~vII~apTGSGKTt~i 59 (1020)
+.++|.|++|+|||..+
T Consensus 315 NpL~LyG~sGsGKTHLL 331 (617)
T PRK14086 315 NPLFIYGESGLGKTHLL 331 (617)
T ss_pred CcEEEECCCCCCHHHHH
Confidence 34899999999999643
No 283
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.82 E-value=0.087 Score=61.07 Aligned_cols=21 Identities=24% Similarity=0.359 Sum_probs=16.6
Q ss_pred EEEEecCCCCCCcCChhhhhh
Q 001729 44 VTLIVGETGCGKSSQVPQFLL 64 (1020)
Q Consensus 44 ~vII~apTGSGKTt~ip~~ll 64 (1020)
.+++.||.|+||||.+-.+..
T Consensus 40 ~~L~~Gp~G~GKTtla~~la~ 60 (363)
T PRK14961 40 AWLLSGTRGVGKTTIARLLAK 60 (363)
T ss_pred EEEEecCCCCCHHHHHHHHHH
Confidence 469999999999986655543
No 284
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.76 E-value=0.12 Score=62.57 Aligned_cols=39 Identities=26% Similarity=0.366 Sum_probs=23.3
Q ss_pred ceeEEEEeecccccccccceeehhhhhHhhccCCeEEEEee
Q 001729 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (1020)
Q Consensus 136 ~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmS 176 (1020)
.++.++||||||. ++.+....+++.+-...+...+|+.+
T Consensus 118 g~~kViIIDEa~~--ls~~a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 118 GRYKVYLIDEVHM--LSKQSFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred CCcEEEEEechhh--ccHHHHHHHHHHHhcCCCCceEEEEE
Confidence 3789999999993 33333444555544333455566544
No 285
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=93.75 E-value=0.086 Score=60.68 Aligned_cols=38 Identities=16% Similarity=0.330 Sum_probs=24.7
Q ss_pred eeEEEEeecccccccccceeehhhhhHhhccCCeEEEEee
Q 001729 137 KYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (1020)
Q Consensus 137 ~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmS 176 (1020)
.+.+|||||||. ++..-...++|.+-.-.+...+|++|
T Consensus 141 ~~rVviIDeAd~--l~~~aanaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 141 NWRIVIIDPADD--MNRNAANAILKTLEEPPARALFILIS 178 (351)
T ss_pred CceEEEEEchhh--cCHHHHHHHHHHHhcCCCCceEEEEE
Confidence 789999999994 34444555666665434445555554
No 286
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=93.75 E-value=0.067 Score=62.98 Aligned_cols=17 Identities=29% Similarity=0.477 Sum_probs=14.3
Q ss_pred cEEEEecCCCCCCcCCh
Q 001729 43 RVTLIVGETGCGKSSQV 59 (1020)
Q Consensus 43 ~~vII~apTGSGKTt~i 59 (1020)
..+++.|++|+|||+.+
T Consensus 137 n~l~l~G~~G~GKThL~ 153 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL 153 (405)
T ss_pred CeEEEECCCCCcHHHHH
Confidence 35899999999999654
No 287
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=93.66 E-value=0.12 Score=54.92 Aligned_cols=34 Identities=29% Similarity=0.447 Sum_probs=24.0
Q ss_pred HHHHHHHhh--ccEEEEecCCCCCCcCChhhhhhhc
Q 001729 33 EKIVEKVLE--NRVTLIVGETGCGKSSQVPQFLLAE 66 (1020)
Q Consensus 33 ~eil~~i~~--~~~vII~apTGSGKTt~ip~~lle~ 66 (1020)
+++.+.+.+ ++.++|.||-|+|||+.+-.++-..
T Consensus 9 ~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 9 EKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp HHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred HHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 344444554 4789999999999998766555443
No 288
>PRK12377 putative replication protein; Provisional
Probab=93.64 E-value=0.19 Score=55.03 Aligned_cols=18 Identities=22% Similarity=0.342 Sum_probs=15.1
Q ss_pred ccEEEEecCCCCCCcCCh
Q 001729 42 NRVTLIVGETGCGKSSQV 59 (1020)
Q Consensus 42 ~~~vII~apTGSGKTt~i 59 (1020)
...+++.|++|+|||+.+
T Consensus 101 ~~~l~l~G~~GtGKThLa 118 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLA 118 (248)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 368999999999999544
No 289
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=93.64 E-value=0.11 Score=55.94 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=16.7
Q ss_pred hccEEEEecCCCCCCcCChhh
Q 001729 41 ENRVTLIVGETGCGKSSQVPQ 61 (1020)
Q Consensus 41 ~~~~vII~apTGSGKTt~ip~ 61 (1020)
.++.+++.||+|+|||+.+-.
T Consensus 41 ~~~~~~l~G~~G~GKT~La~a 61 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQA 61 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 346899999999999975433
No 290
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=93.51 E-value=0.11 Score=61.65 Aligned_cols=17 Identities=29% Similarity=0.477 Sum_probs=14.3
Q ss_pred cEEEEecCCCCCCcCCh
Q 001729 43 RVTLIVGETGCGKSSQV 59 (1020)
Q Consensus 43 ~~vII~apTGSGKTt~i 59 (1020)
+.+++.||+|+|||+.+
T Consensus 131 n~l~lyG~~G~GKTHLl 147 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLL 147 (440)
T ss_pred CeEEEEcCCCCcHHHHH
Confidence 46999999999999644
No 291
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=93.41 E-value=0.091 Score=58.36 Aligned_cols=53 Identities=17% Similarity=0.236 Sum_probs=33.3
Q ss_pred cEEEEecCCCCCCcCChhhhhhhcCCc--------cccc-cCCceehhhhHHHHHhhccccc
Q 001729 43 RVTLIVGETGCGKSSQVPQFLLAENME--------PILC-TQPRRFAVVAVAKMVAKGRNCE 95 (1020)
Q Consensus 43 ~~vII~apTGSGKTt~ip~~lle~~~~--------~Iiv-tqPrrlaa~sva~rva~e~~~~ 95 (1020)
.+++|+|+||-|||+.+-.|.-.+... .|++ -.|..--...++..+...++.+
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAP 123 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence 589999999999999888887654321 2333 3333333445555555555544
No 292
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=93.38 E-value=0.092 Score=64.65 Aligned_cols=39 Identities=31% Similarity=0.417 Sum_probs=24.8
Q ss_pred ceeEEEEeecccccccccceeehhhhhHhhccCCeEEEEee
Q 001729 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (1020)
Q Consensus 136 ~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmS 176 (1020)
.++++|||||+|. +..+....++|.+-......++|+.+
T Consensus 118 gk~KVIIIDEad~--Ls~~A~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 118 GKYKVYIIDEVHM--LSKSAFNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred CCcEEEEEECccc--cCHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 3789999999993 33333445566655445566666654
No 293
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=93.31 E-value=0.4 Score=55.39 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=19.9
Q ss_pred cCCCCccchhhHHHHHHHHhhhhh
Q 001729 445 LDPPYPEVVGDALDLLDHKRALQK 468 (1020)
Q Consensus 445 ldpP~~~~i~~al~~L~~lgald~ 468 (1020)
++|.....+.+.+..|..+|.|+.
T Consensus 326 ~~~~~~~~~~~~l~~l~~~gli~~ 349 (365)
T TIGR02928 326 VDPLTQRRISDLLNELDMLGLVEA 349 (365)
T ss_pred CCCCcHHHHHHHHHHHHhcCCeEE
Confidence 356667788999999999999975
No 294
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=93.20 E-value=0.13 Score=60.42 Aligned_cols=33 Identities=18% Similarity=0.341 Sum_probs=26.8
Q ss_pred hHHHHHHHHhhccEEEEecCCCCCCcCChhhhh
Q 001729 31 LREKIVEKVLENRVTLIVGETGCGKSSQVPQFL 63 (1020)
Q Consensus 31 ~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~l 63 (1020)
..+.++.++..++++++.|++|+|||+.+-.+.
T Consensus 183 ~le~l~~~L~~~~~iil~GppGtGKT~lA~~la 215 (459)
T PRK11331 183 TIETILKRLTIKKNIILQGPPGVGKTFVARRLA 215 (459)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHH
Confidence 456778888889999999999999997665443
No 295
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=93.20 E-value=0.12 Score=61.48 Aligned_cols=17 Identities=24% Similarity=0.483 Sum_probs=14.3
Q ss_pred cEEEEecCCCCCCcCCh
Q 001729 43 RVTLIVGETGCGKSSQV 59 (1020)
Q Consensus 43 ~~vII~apTGSGKTt~i 59 (1020)
+.+++.||+|+|||+.+
T Consensus 142 npl~L~G~~G~GKTHLl 158 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLM 158 (445)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 45899999999999644
No 296
>PRK09087 hypothetical protein; Validated
Probab=93.15 E-value=0.18 Score=54.37 Aligned_cols=19 Identities=26% Similarity=0.543 Sum_probs=15.6
Q ss_pred ccEEEEecCCCCCCcCChh
Q 001729 42 NRVTLIVGETGCGKSSQVP 60 (1020)
Q Consensus 42 ~~~vII~apTGSGKTt~ip 60 (1020)
++.++|.||+|||||+.+-
T Consensus 44 ~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4569999999999997553
No 297
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=93.14 E-value=0.059 Score=57.94 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=18.4
Q ss_pred EEEecCCCCCCcCChhhhhhhc
Q 001729 45 TLIVGETGCGKSSQVPQFLLAE 66 (1020)
Q Consensus 45 vII~apTGSGKTt~ip~~lle~ 66 (1020)
++|.|+.|||||+.+...+...
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 4799999999999887776654
No 298
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=93.13 E-value=0.1 Score=62.08 Aligned_cols=17 Identities=35% Similarity=0.604 Sum_probs=14.3
Q ss_pred cEEEEecCCCCCCcCCh
Q 001729 43 RVTLIVGETGCGKSSQV 59 (1020)
Q Consensus 43 ~~vII~apTGSGKTt~i 59 (1020)
+.++|.|++|+|||+.+
T Consensus 142 npl~i~G~~G~GKTHLl 158 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL 158 (450)
T ss_pred CceEEECCCCCcHHHHH
Confidence 45899999999999644
No 299
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=93.10 E-value=0.086 Score=53.79 Aligned_cols=41 Identities=27% Similarity=0.397 Sum_probs=28.6
Q ss_pred eeEEEEeecccccccccceeehhhhhHhhccCCeEEEEeeccc
Q 001729 137 KYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATA 179 (1020)
Q Consensus 137 ~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmSATl 179 (1020)
.+.++|||||| .+..+...+++|.+-.-..+..+|++|-.+
T Consensus 102 ~~KviiI~~ad--~l~~~a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 102 KYKVIIIDEAD--KLTEEAQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp SSEEEEEETGG--GS-HHHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred CceEEEeehHh--hhhHHHHHHHHHHhcCCCCCEEEEEEECCh
Confidence 79999999999 345555667777766555677777776553
No 300
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=93.07 E-value=0.11 Score=64.62 Aligned_cols=119 Identities=20% Similarity=0.219 Sum_probs=69.8
Q ss_pred cchhhhHHHHHHHHh-hccEEEEecCCCCCCcCChhhhh--hhcCCccccccCCceehhhhHHHHHhhccc--cccCcc-
Q 001729 26 LPVMSLREKIVEKVL-ENRVTLIVGETGCGKSSQVPQFL--LAENMEPILCTQPRRFAVVAVAKMVAKGRN--CELGGE- 99 (1020)
Q Consensus 26 LPi~~~Q~eil~~i~-~~~~vII~apTGSGKTt~ip~~l--le~~~~~IivtqPrrlaa~sva~rva~e~~--~~lg~~- 99 (1020)
+-+..-|.+++..++ ...-.+|.|=+|+||||.+...+ +-...++|++|.-|-.|+..+-.++....- ..+|..
T Consensus 668 ~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNILiKL~~~~i~~lRLG~~~ 747 (1100)
T KOG1805|consen 668 LRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVALGKKVLLTSYTHSAVDNILIKLKGFGIYILRLGSEE 747 (1100)
T ss_pred hhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHcCCeEEEEehhhHHHHHHHHHHhccCcceeecCCcc
Confidence 456666777666655 45668999999999998776553 344456888888888887777666554321 112211
Q ss_pred -cceecccc--------------ccccccceEEeeechhhhHHHHHhccccceeEEEEeecccc
Q 001729 100 -VGYHIGHS--------------KHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHE 148 (1020)
Q Consensus 100 -Vgy~i~~~--------------~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHE 148 (1020)
|--.+... ...-+.+.|+.+|-=-+-.-+. ....+++.|||||-.
T Consensus 748 kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf----~~R~FD~cIiDEASQ 807 (1100)
T KOG1805|consen 748 KIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF----VNRQFDYCIIDEASQ 807 (1100)
T ss_pred ccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh----hccccCEEEEccccc
Confidence 11001000 0112456777777422222222 123799999999983
No 301
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.07 E-value=0.13 Score=62.90 Aligned_cols=39 Identities=21% Similarity=0.311 Sum_probs=24.7
Q ss_pred ceeEEEEeecccccccccceeehhhhhHhhccCCeEEEEee
Q 001729 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (1020)
Q Consensus 136 ~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmS 176 (1020)
.++.++||||+|. +..+-...++|.+-.-.+...+|+.+
T Consensus 117 ~~~KVvIIDEah~--Lt~~A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 117 SRYRIFIVDEAHM--VTTAGFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred CCceEEEEECCCc--CCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 3899999999993 33444445555554444456666544
No 302
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=93.00 E-value=0.083 Score=73.12 Aligned_cols=136 Identities=14% Similarity=0.202 Sum_probs=78.7
Q ss_pred CcchhhhHHHHHHHHhhc--cEEEEecCCCCCCcCChhhh--hhhcCCccccccCCceehhhhHHHHHhhccccccCccc
Q 001729 25 SLPVMSLREKIVEKVLEN--RVTLIVGETGCGKSSQVPQF--LLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEV 100 (1020)
Q Consensus 25 ~LPi~~~Q~eil~~i~~~--~~vII~apTGSGKTt~ip~~--lle~~~~~IivtqPrrlaa~sva~rva~e~~~~lg~~V 100 (1020)
.+++.+-|.+++..+..+ ++.+|.|+.|+||||.+-.. +++.....|+++.|+.-+|..+.+.. +..-....
T Consensus 427 ~~~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~~~~~~~G~~V~~lAPTgrAA~~L~e~~----g~~A~Ti~ 502 (1960)
T TIGR02760 427 EFALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLLHLASEQGYEIQIITAGSLSAQELRQKI----PRLASTFI 502 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHh----cchhhhHH
Confidence 478899999999998764 89999999999999765443 33433346777788777666655432 21110000
Q ss_pred ceeccccccccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhccCCeEEEEeecc
Q 001729 101 GYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (1020)
Q Consensus 101 gy~i~~~~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmSAT 178 (1020)
.+. ..... . ....|...++ .....+..-++||||||- +++...+..+++... ..+.|||++-=+
T Consensus 503 ~~l----~~l~~-~-~~~~tv~~fl----~~~~~l~~~~vlIVDEAs--Ml~~~~~~~Ll~~a~--~~garvVlvGD~ 566 (1960)
T TIGR02760 503 TWV----KNLFN-D-DQDHTVQGLL----DKSSPFSNKDIFVVDEAN--KLSNNELLKLIDKAE--QHNSKLILLNDS 566 (1960)
T ss_pred HHH----Hhhcc-c-ccchhHHHhh----cccCCCCCCCEEEEECCC--CCCHHHHHHHHHHHh--hcCCEEEEEcCh
Confidence 000 00000 0 0111222222 122233477999999998 555555555555432 345788877544
No 303
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=92.99 E-value=0.18 Score=56.07 Aligned_cols=123 Identities=17% Similarity=0.242 Sum_probs=64.1
Q ss_pred cEEEEecCCCCCCcCChhhhhh---hcCCccc-cccCCceehhhhHHHHHhhccccccCcccceeccccccccccceEEe
Q 001729 43 RVTLIVGETGCGKSSQVPQFLL---AENMEPI-LCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVF 118 (1020)
Q Consensus 43 ~~vII~apTGSGKTt~ip~~ll---e~~~~~I-ivtqPrrlaa~sva~rva~e~~~~lg~~Vgy~i~~~~~~~~~t~Iiv 118 (1020)
+.++++|++|+||||.+..+.. +.+.+.. +-+-+-|..+....+.+++.++..+ + .... ..+
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~---~--~~~~----~~d----- 138 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDV---I--KQKE----GAD----- 138 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEE---E--eCCC----CCC-----
Confidence 5788899999999987665543 3333322 2334556666555555555444221 0 0000 000
Q ss_pred eec-hhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhh-------ccCCeEEEEeecccchhhh
Q 001729 119 KTA-GVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLL-------KKNDLRVVLMSATADITKY 184 (1020)
Q Consensus 119 ~Tp-g~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~-------~~~~lkiIlmSATld~~~~ 184 (1020)
| ....+.+... ...++++||||=+- |......++.-++.+.. ..++-.+++++||...+.+
T Consensus 139 --p~~~~~~~l~~~--~~~~~D~ViIDT~G-~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~ 207 (272)
T TIGR00064 139 --PAAVAFDAIQKA--KARNIDVVLIDTAG-RLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNAL 207 (272)
T ss_pred --HHHHHHHHHHHH--HHCCCCEEEEeCCC-CCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHH
Confidence 1 1222222211 12379999999997 44332233333333322 2267789999999744333
No 304
>PRK04841 transcriptional regulator MalT; Provisional
Probab=92.98 E-value=0.17 Score=65.76 Aligned_cols=28 Identities=25% Similarity=0.487 Sum_probs=23.7
Q ss_pred hhccEEEEecCCCCCCcCChhhhhhhcC
Q 001729 40 LENRVTLIVGETGCGKSSQVPQFLLAEN 67 (1020)
Q Consensus 40 ~~~~~vII~apTGSGKTt~ip~~lle~~ 67 (1020)
...+.++|+||.|.||||.+.+++...+
T Consensus 30 ~~~~~~~v~apaG~GKTtl~~~~~~~~~ 57 (903)
T PRK04841 30 NNYRLVLVTSPAGYGKTTLISQWAAGKN 57 (903)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHhCC
Confidence 4557999999999999999999886544
No 305
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=92.97 E-value=0.045 Score=55.47 Aligned_cols=28 Identities=25% Similarity=0.632 Sum_probs=22.5
Q ss_pred CCCCCccceeec-cccccCCCCCCCCcCc
Q 001729 733 TPGEAPLCVYFI-NGSCNRGTGCPFSHSL 760 (1020)
Q Consensus 733 ~~~~~~~C~~f~-~G~C~~G~~C~f~H~~ 760 (1020)
...++.+|+-|. +|.|-+||+|+|.|+.
T Consensus 137 iD~qpdVCKdyk~TGYCGYGDsCKflH~R 165 (259)
T COG5152 137 IDTQPDVCKDYKETGYCGYGDSCKFLHDR 165 (259)
T ss_pred eecCcccccchhhcccccCCchhhhhhhh
Confidence 345777888888 6888888888888876
No 306
>KOG4791 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.94 E-value=0.052 Score=61.73 Aligned_cols=59 Identities=12% Similarity=0.085 Sum_probs=44.9
Q ss_pred CCCccCCCCCccceeecccc-ccCCCCCCCCcCcCC------------------------------CCCCccceeccCCC
Q 001729 728 VNGSETPGEAPLCVYFINGS-CNRGTGCPFSHSLQA------------------------------KRPACKFFYSLQGC 776 (1020)
Q Consensus 728 ~~~~~~~~~~~~C~~f~~G~-C~~G~~C~f~H~~~~------------------------------~~~~C~~f~~~g~C 776 (1020)
|..-........|.|+.+|+ |.+ ++|.|.|...+ -..||-+| ++|.|
T Consensus 52 HSe~~~kr~e~~CYwe~~p~gC~k-~~CgfRH~~pPLkg~l~~~p~~pe~ev~~~~~SAq~~sV~~~p~P~l~~-~K~~e 129 (667)
T KOG4791|consen 52 HSEIDKKRSEIPCYWENQPTGCQK-LNCGFRHNRPPLKGVLPTVPESPEEEVKASQLSAQQNSVQSNPSPQLRS-VKKVE 129 (667)
T ss_pred hhHHhhhcCcccceeecCCCccCC-CccccccCCCchhhhccCCCCCcccccccccccCCCcccccCCchHHHH-hhhhh
Confidence 33333344667899999987 988 78999993200 01279999 99999
Q ss_pred CCCCCCccCCCC
Q 001729 777 RNGDSCIFSHDL 788 (1020)
Q Consensus 777 ~~g~~C~f~H~~ 788 (1020)
..||-|-|.|.+
T Consensus 130 ~~~D~~s~Lh~P 141 (667)
T KOG4791|consen 130 SSEDVPSPLHPP 141 (667)
T ss_pred hhccccccCCCC
Confidence 999999999988
No 307
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=92.90 E-value=0.079 Score=56.43 Aligned_cols=16 Identities=31% Similarity=0.490 Sum_probs=13.7
Q ss_pred cEEEEecCCCCCCcCC
Q 001729 43 RVTLIVGETGCGKSSQ 58 (1020)
Q Consensus 43 ~~vII~apTGSGKTt~ 58 (1020)
..+|+.||+|+||||.
T Consensus 51 ~h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTL 66 (233)
T ss_dssp -EEEEESSTTSSHHHH
T ss_pred ceEEEECCCccchhHH
Confidence 4799999999999973
No 308
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=92.88 E-value=0.15 Score=58.18 Aligned_cols=31 Identities=23% Similarity=0.343 Sum_probs=21.6
Q ss_pred HHHHHHhhcc--EEEEecCCCCCCcCChhhhhh
Q 001729 34 KIVEKVLENR--VTLIVGETGCGKSSQVPQFLL 64 (1020)
Q Consensus 34 eil~~i~~~~--~vII~apTGSGKTt~ip~~ll 64 (1020)
.+...+..++ .+++.||+|+|||+.+-.+..
T Consensus 26 ~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~ 58 (337)
T PRK12402 26 RLSRAVDSPNLPHLLVQGPPGSGKTAAVRALAR 58 (337)
T ss_pred HHHHHHhCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3333344555 799999999999987655543
No 309
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=92.86 E-value=0.16 Score=61.22 Aligned_cols=33 Identities=27% Similarity=0.431 Sum_probs=22.5
Q ss_pred HHHHHHHH----hhcc---EEEEecCCCCCCcCChhhhhh
Q 001729 32 REKIVEKV----LENR---VTLIVGETGCGKSSQVPQFLL 64 (1020)
Q Consensus 32 Q~eil~~i----~~~~---~vII~apTGSGKTt~ip~~ll 64 (1020)
|+.++..+ .+++ .++++||.|+||||.+-.+..
T Consensus 26 q~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk 65 (507)
T PRK06645 26 QEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAK 65 (507)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 55555443 3443 689999999999986655443
No 310
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=92.79 E-value=0.095 Score=56.28 Aligned_cols=15 Identities=27% Similarity=0.549 Sum_probs=13.4
Q ss_pred cEEEEecCCCCCCcC
Q 001729 43 RVTLIVGETGCGKSS 57 (1020)
Q Consensus 43 ~~vII~apTGSGKTt 57 (1020)
+.+.|.|++|+|||.
T Consensus 35 ~~l~l~G~~G~GKTH 49 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTH 49 (219)
T ss_dssp SEEEEEESTTSSHHH
T ss_pred CceEEECCCCCCHHH
Confidence 358999999999996
No 311
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=92.72 E-value=0.31 Score=59.33 Aligned_cols=150 Identities=23% Similarity=0.358 Sum_probs=83.6
Q ss_pred chhhhHHHHHHHHh--------hccEEEEecCCCCCCcCChhhhhhhcCCccccccCCceehhhhHHHHHhhcc-ccccC
Q 001729 27 PVMSLREKIVEKVL--------ENRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGR-NCELG 97 (1020)
Q Consensus 27 Pi~~~Q~eil~~i~--------~~~~vII~apTGSGKTt~ip~~lle~~~~~IivtqPrrlaa~sva~rva~e~-~~~lg 97 (1020)
-+-.+.++|++-+. ++..+.++||+|.|||. ++.++|+.+.+++ ...+|
T Consensus 327 GLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTS----------------------LgkSIA~al~RkfvR~sLG 384 (782)
T COG0466 327 GLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTS----------------------LGKSIAKALGRKFVRISLG 384 (782)
T ss_pred CchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchh----------------------HHHHHHHHhCCCEEEEecC
Confidence 35567888888764 45689999999999995 4556666554432 23344
Q ss_pred cccceeccccccccccceEEe-eechhhhHHHHHhccccceeEEEEeecccc--cccccceeehhhhhHhh---------
Q 001729 98 GEVGYHIGHSKHLSERSKIVF-KTAGVLLDEMRDRGLNALKYKVIILDEVHE--RSVESDLVLVCVKQLLL--------- 165 (1020)
Q Consensus 98 ~~Vgy~i~~~~~~~~~t~Iiv-~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHE--R~l~~d~ll~~lk~ll~--------- 165 (1020)
+ +|.+......-+=-+ +-||.+.+-|..... .--++++||++. .+...|..-++|.-+-.
T Consensus 385 G-----vrDEAEIRGHRRTYIGamPGrIiQ~mkka~~---~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~Dh 456 (782)
T COG0466 385 G-----VRDEAEIRGHRRTYIGAMPGKIIQGMKKAGV---KNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDH 456 (782)
T ss_pred c-----cccHHHhccccccccccCChHHHHHHHHhCC---cCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhc
Confidence 3 233333332222222 459999998875432 335799999995 33444544444433211
Q ss_pred ---ccCCeEEEEeecccch-hhhhHHHhhcCCcceEEEEEecCCCchhhH
Q 001729 166 ---KKNDLRVVLMSATADI-TKYRDYFRDLGRGERVEVLAIPSTNQRTIF 211 (1020)
Q Consensus 166 ---~~~~lkiIlmSATld~-~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~ 211 (1020)
..-|+-=|++=||.|. +.+-.-+ -+.++++.+++......+
T Consensus 457 YLev~yDLS~VmFiaTANsl~tIP~PL-----lDRMEiI~lsgYt~~EKl 501 (782)
T COG0466 457 YLEVPYDLSKVMFIATANSLDTIPAPL-----LDRMEVIRLSGYTEDEKL 501 (782)
T ss_pred cccCccchhheEEEeecCccccCChHH-----hcceeeeeecCCChHHHH
Confidence 1224544566666431 1111111 134788888876443333
No 312
>CHL00181 cbbX CbbX; Provisional
Probab=92.67 E-value=0.15 Score=57.16 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=15.2
Q ss_pred cEEEEecCCCCCCcCChhh
Q 001729 43 RVTLIVGETGCGKSSQVPQ 61 (1020)
Q Consensus 43 ~~vII~apTGSGKTt~ip~ 61 (1020)
-++++.||+|+|||+.+-.
T Consensus 60 ~~ill~G~pGtGKT~lAr~ 78 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALK 78 (287)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4689999999999975433
No 313
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=92.61 E-value=0.23 Score=64.11 Aligned_cols=109 Identities=20% Similarity=0.213 Sum_probs=88.9
Q ss_pred cEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhcc--c-eEEEEeccccccccccceeEEeeccc
Q 001729 278 SILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSH--R-KVILATNIAESSVTIPKVAYVIDSCR 354 (1020)
Q Consensus 278 ~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~g--r-kVLVATniae~GIdIp~V~~VId~G~ 354 (1020)
++|||.+-.....-+...+.... +....++|+++..+|...++.|..+ . -++++|-.++.|+|.-..+.||.
T Consensus 713 kvlifsq~t~~l~il~~~l~~~~--~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~--- 787 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKALG--IKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVIL--- 787 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhcC--CcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEE---
Confidence 79999999998888888887443 6788999999999999999999875 3 67778889999999999999998
Q ss_pred ceeeeeeccccccceeeEEeehhHHHHhcCCCCcccCCeeEEeechhhc
Q 001729 355 SLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFF 403 (1020)
Q Consensus 355 ~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~c~rLys~~~~ 403 (1020)
||+..+.... .+|..|+-|.|+.++=.+|++.+++..
T Consensus 788 -----~d~~wnp~~~-------~Qa~dRa~RigQ~~~v~v~r~i~~~ti 824 (866)
T COG0553 788 -----FDPWWNPAVE-------LQAIDRAHRIGQKRPVKVYRLITRGTI 824 (866)
T ss_pred -----eccccChHHH-------HHHHHHHHHhcCcceeEEEEeecCCcH
Confidence 8887655443 455666666777788889999987654
No 314
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.50 E-value=0.16 Score=62.35 Aligned_cols=38 Identities=29% Similarity=0.434 Sum_probs=23.0
Q ss_pred eeEEEEeecccccccccceeehhhhhHhhccCCeEEEEee
Q 001729 137 KYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (1020)
Q Consensus 137 ~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmS 176 (1020)
+++++||||+|. +..+-...++|.+-.......+|+.+
T Consensus 124 ~~KV~IIDEvh~--Ls~~a~NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 124 RFKVFMIDEVHM--LTNTAFNAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred CceEEEEEChhh--CCHHHHHHHHHhcccCCCCeEEEEEE
Confidence 799999999993 33333444555544333445666544
No 315
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=92.41 E-value=0.098 Score=58.59 Aligned_cols=51 Identities=24% Similarity=0.326 Sum_probs=40.8
Q ss_pred cchhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhh----hhhcCCccccccCC
Q 001729 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQF----LLAENMEPILCTQP 76 (1020)
Q Consensus 26 LPi~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~----lle~~~~~IivtqP 76 (1020)
.|.++-|..-++++.++..+.-.||-|+|||+...-. +.....++|+.+-|
T Consensus 127 ~~kt~~Q~~y~eai~~~di~fGiGpAGTGKTyLava~av~al~~~~v~rIiLtRP 181 (348)
T COG1702 127 IPKTPGQNMYPEAIEEHDIVFGIGPAGTGKTYLAVAKAVDALGAGQVRRIILTRP 181 (348)
T ss_pred EecChhHHHHHHHHHhcCeeeeecccccCChhhhHHhHhhhhhhcccceeeecCc
Confidence 8899999999999999999999999999999533222 22223358999988
No 316
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=92.30 E-value=0.91 Score=56.06 Aligned_cols=72 Identities=13% Similarity=0.081 Sum_probs=51.3
Q ss_pred cccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhc----c-ceEEEEeccccccccc-------
Q 001729 276 EKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKS----H-RKVILATNIAESSVTI------- 343 (1020)
Q Consensus 276 ~g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~----g-rkVLVATniae~GIdI------- 343 (1020)
+|.+||-.+++..++.+++.|.... .+. +...|..+. +...++.|+. + ..||++|+.+-+|||+
T Consensus 470 ~G~~lvLfTS~~~~~~~~~~l~~~l-~~~-~l~qg~~~~--~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p 545 (636)
T TIGR03117 470 QGGTLVLTTAFSHISAIGQLVELGI-PAE-IVIQSEKNR--LASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSP 545 (636)
T ss_pred CCCEEEEechHHHHHHHHHHHHhhc-CCC-EEEeCCCcc--HHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCC
Confidence 4799999999999999999886422 133 334554432 2345566665 3 4999999999999999
Q ss_pred ---cceeEEee
Q 001729 344 ---PKVAYVID 351 (1020)
Q Consensus 344 ---p~V~~VId 351 (1020)
+.++.||-
T Consensus 546 ~~G~~Ls~ViI 556 (636)
T TIGR03117 546 DKDNLLTDLII 556 (636)
T ss_pred CCCCcccEEEE
Confidence 24777764
No 317
>PRK08939 primosomal protein DnaI; Reviewed
Probab=92.18 E-value=0.39 Score=54.28 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=16.6
Q ss_pred ccEEEEecCCCCCCcCChhhh
Q 001729 42 NRVTLIVGETGCGKSSQVPQF 62 (1020)
Q Consensus 42 ~~~vII~apTGSGKTt~ip~~ 62 (1020)
++.+++.|++|+|||+.+..+
T Consensus 156 ~~gl~L~G~~G~GKThLa~Ai 176 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAI 176 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 468999999999999654433
No 318
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=92.08 E-value=0.33 Score=56.99 Aligned_cols=128 Identities=16% Similarity=0.248 Sum_probs=67.4
Q ss_pred cEEEEecCCCCCCcCChhhhhh---hcCCcc-ccccCCceehhhhHHHHHhhccccccCcccceeccccccccccceEEe
Q 001729 43 RVTLIVGETGCGKSSQVPQFLL---AENMEP-ILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVF 118 (1020)
Q Consensus 43 ~~vII~apTGSGKTt~ip~~ll---e~~~~~-IivtqPrrlaa~sva~rva~e~~~~lg~~Vgy~i~~~~~~~~~t~Iiv 118 (1020)
.++.++|++|+||||.+..+.. ..+.+. ++-+-|.|.+|....+..++..+.++- ..... .
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~-----~~~~~------~---- 165 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFY-----GSYTE------S---- 165 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEE-----eecCC------C----
Confidence 4788999999999987665543 334332 333445566666555555554432210 00000 0
Q ss_pred eec-hhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHh-hccCCeEEEEeeccc--chhhhhHHHh
Q 001729 119 KTA-GVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLL-LKKNDLRVVLMSATA--DITKYRDYFR 189 (1020)
Q Consensus 119 ~Tp-g~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll-~~~~~lkiIlmSATl--d~~~~~~~f~ 189 (1020)
.| .+..+.+..- ...++++||||=+- |.-..+-++.-++.+. ...|+..+++++||. ++....+-|.
T Consensus 166 -dp~~i~~~~l~~~--~~~~~DvViIDTaG-r~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~ 236 (429)
T TIGR01425 166 -DPVKIASEGVEKF--KKENFDIIIVDTSG-RHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFK 236 (429)
T ss_pred -CHHHHHHHHHHHH--HhCCCCEEEEECCC-CCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHH
Confidence 11 1111122211 11268999999997 5433333444444433 235677888999986 3333445554
No 319
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=92.04 E-value=0.29 Score=60.95 Aligned_cols=19 Identities=37% Similarity=0.541 Sum_probs=15.3
Q ss_pred EEEEecCCCCCCcCChhhh
Q 001729 44 VTLIVGETGCGKSSQVPQF 62 (1020)
Q Consensus 44 ~vII~apTGSGKTt~ip~~ 62 (1020)
..|+.||.|+|||+.+-.+
T Consensus 42 AYLF~GP~GtGKTt~AriL 60 (725)
T PRK07133 42 AYLFSGPRGTGKTSVAKIF 60 (725)
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 4689999999999765444
No 320
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.91 E-value=0.28 Score=58.70 Aligned_cols=20 Identities=20% Similarity=0.393 Sum_probs=16.0
Q ss_pred EEEEecCCCCCCcCChhhhh
Q 001729 44 VTLIVGETGCGKSSQVPQFL 63 (1020)
Q Consensus 44 ~vII~apTGSGKTt~ip~~l 63 (1020)
.+|+.||+|+||||.+-.+.
T Consensus 38 ~~Lf~GPpGtGKTTlA~~lA 57 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARILA 57 (472)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47999999999998665443
No 321
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.75 E-value=0.38 Score=58.99 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=16.3
Q ss_pred cEEEEecCCCCCCcCChhhhh
Q 001729 43 RVTLIVGETGCGKSSQVPQFL 63 (1020)
Q Consensus 43 ~~vII~apTGSGKTt~ip~~l 63 (1020)
..+|+.||.|+|||+.+-.+.
T Consensus 39 ha~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 358899999999997654443
No 322
>PRK10436 hypothetical protein; Provisional
Probab=91.72 E-value=0.2 Score=59.75 Aligned_cols=41 Identities=22% Similarity=0.318 Sum_probs=28.8
Q ss_pred cCcchhhhHHHHHHHHh--hccEEEEecCCCCCCcCChhhhhh
Q 001729 24 SSLPVMSLREKIVEKVL--ENRVTLIVGETGCGKSSQVPQFLL 64 (1020)
Q Consensus 24 ~~LPi~~~Q~eil~~i~--~~~~vII~apTGSGKTt~ip~~ll 64 (1020)
..|-+.+.+.+.+..+. .+..++|+|||||||||.+-..+.
T Consensus 198 ~~LG~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL~a~l~ 240 (462)
T PRK10436 198 ETLGMTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTLYSALQ 240 (462)
T ss_pred HHcCcCHHHHHHHHHHHHhcCCeEEEECCCCCChHHHHHHHHH
Confidence 34556666666666553 456899999999999987654443
No 323
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.69 E-value=0.33 Score=57.01 Aligned_cols=20 Identities=25% Similarity=0.400 Sum_probs=16.0
Q ss_pred EEEEecCCCCCCcCChhhhh
Q 001729 44 VTLIVGETGCGKSSQVPQFL 63 (1020)
Q Consensus 44 ~vII~apTGSGKTt~ip~~l 63 (1020)
.+|+.||.|+||||.+-.+.
T Consensus 40 a~lf~Gp~G~GKtt~A~~~a 59 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVFA 59 (397)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 48899999999998665543
No 324
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=91.67 E-value=0.15 Score=62.71 Aligned_cols=55 Identities=16% Similarity=0.113 Sum_probs=40.2
Q ss_pred hhccceEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcc---cCCeeEE
Q 001729 324 CKSHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT---CDGQVYR 396 (1020)
Q Consensus 324 f~~grkVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~---~~G~c~r 396 (1020)
|...++.|++--++-.|.|=|+|=.+.- ..... |-.+=.|.+||.-|. ..|.-++
T Consensus 480 Fd~plRFIFS~waLrEGWDNPNVFtIck--------L~~S~----------SeiSK~QeVGRGLRLaVNe~G~RV~ 537 (985)
T COG3587 480 FDEPLRFIFSKWALREGWDNPNVFTICK--------LRSSG----------SEISKLQEVGRGLRLAVNENGERVT 537 (985)
T ss_pred cCCcceeeeehhHHhhcCCCCCeeEEEE--------ecCCC----------cchHHHHHhccceeeeeccccceec
Confidence 4556799999999999999999866652 22222 334458999999998 5676555
No 325
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=91.61 E-value=0.18 Score=50.31 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=18.4
Q ss_pred EEEEecCCCCCCcCChhhhhhhc
Q 001729 44 VTLIVGETGCGKSSQVPQFLLAE 66 (1020)
Q Consensus 44 ~vII~apTGSGKTt~ip~~lle~ 66 (1020)
.++|.|++|+|||+.+..++...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH
Confidence 36899999999998777776554
No 326
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=91.60 E-value=0.22 Score=56.87 Aligned_cols=35 Identities=31% Similarity=0.547 Sum_probs=23.6
Q ss_pred eeEEEEeecccccccc--cceeehhhhhHhhccCCeEEEEeeccc
Q 001729 137 KYKVIILDEVHERSVE--SDLVLVCVKQLLLKKNDLRVVLMSATA 179 (1020)
Q Consensus 137 ~~s~IIIDEaHER~l~--~d~ll~~lk~ll~~~~~lkiIlmSATl 179 (1020)
+=.+++|||+| |.-. .|+++..+. +-.|++.-||-
T Consensus 104 r~tiLflDEIH-RfnK~QQD~lLp~vE-------~G~iilIGATT 140 (436)
T COG2256 104 RRTILFLDEIH-RFNKAQQDALLPHVE-------NGTIILIGATT 140 (436)
T ss_pred CceEEEEehhh-hcChhhhhhhhhhhc-------CCeEEEEeccC
Confidence 45789999999 5422 255555443 44688889994
No 327
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=91.54 E-value=0.22 Score=61.54 Aligned_cols=38 Identities=29% Similarity=0.439 Sum_probs=28.5
Q ss_pred cccceEEeeechhhhHHHHHhccccc-eeEEEEeecccc
Q 001729 111 SERSKIVFKTAGVLLDEMRDRGLNAL-KYKVIILDEVHE 148 (1020)
Q Consensus 111 ~~~t~Iiv~Tpg~Ll~~l~~~~l~l~-~~s~IIIDEaHE 148 (1020)
.++++||||-...|++-...+...+. +=++||+||||.
T Consensus 220 ~edAdIIF~PYnYLiDp~iR~~~~v~LknsIVIfDEAHN 258 (945)
T KOG1132|consen 220 KEDADIIFCPYNYLIDPKIRRSHKVDLKNSIVIFDEAHN 258 (945)
T ss_pred cccCcEEEechhhhcCHhhhccccccccccEEEEecccc
Confidence 45689999999999877554432222 678999999993
No 328
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=91.54 E-value=0.2 Score=55.13 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=18.7
Q ss_pred HHHHhhccEEEEecCCCCCCcCCh
Q 001729 36 VEKVLENRVTLIVGETGCGKSSQV 59 (1020)
Q Consensus 36 l~~i~~~~~vII~apTGSGKTt~i 59 (1020)
.+.+.++.++++.|++|+|||..+
T Consensus 99 ~~~~~~~~nl~l~G~~G~GKThLa 122 (254)
T COG1484 99 VEFFERGENLVLLGPPGVGKTHLA 122 (254)
T ss_pred HHHhccCCcEEEECCCCCcHHHHH
Confidence 334446789999999999999543
No 329
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=91.47 E-value=0.096 Score=51.60 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=16.8
Q ss_pred EEEEecCCCCCCcCChhhhhhh
Q 001729 44 VTLIVGETGCGKSSQVPQFLLA 65 (1020)
Q Consensus 44 ~vII~apTGSGKTt~ip~~lle 65 (1020)
.|++.||+|+|||+.+-.+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999765544433
No 330
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=91.35 E-value=0.18 Score=67.55 Aligned_cols=58 Identities=22% Similarity=0.316 Sum_probs=42.0
Q ss_pred chhhhHHHHHHHHhh--ccEEEEecCCCCCCcCChhhhh---h---hcCCccccccCCceehhhhH
Q 001729 27 PVMSLREKIVEKVLE--NRVTLIVGETGCGKSSQVPQFL---L---AENMEPILCTQPRRFAVVAV 84 (1020)
Q Consensus 27 Pi~~~Q~eil~~i~~--~~~vII~apTGSGKTt~ip~~l---l---e~~~~~IivtqPrrlaa~sv 84 (1020)
.+++-|.+++..++. ++.++|.|..|+||||.+-.++ . +.....|+.+.|+--++..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHHHH
Confidence 578999999999985 4899999999999998753322 1 22223576677876665554
No 331
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.32 E-value=0.22 Score=61.39 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=16.3
Q ss_pred cEEEEecCCCCCCcCChhhhh
Q 001729 43 RVTLIVGETGCGKSSQVPQFL 63 (1020)
Q Consensus 43 ~~vII~apTGSGKTt~ip~~l 63 (1020)
+.+|+.||.|+|||+.+-.++
T Consensus 39 ~a~Lf~Gp~G~GKTtlA~~lA 59 (585)
T PRK14950 39 HAYLFTGPRGVGKTSTARILA 59 (585)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 346999999999998665544
No 332
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=91.25 E-value=0.52 Score=57.01 Aligned_cols=39 Identities=23% Similarity=0.413 Sum_probs=25.4
Q ss_pred ceeEEEEeecccccccccceeehhhhhHhhccCCeEEEEee
Q 001729 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (1020)
Q Consensus 136 ~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmS 176 (1020)
..+.++||||||. +..+....+++.+-...+...+|+.+
T Consensus 116 ~~~KVvIIDEad~--Lt~~A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 116 ARFKIFIIDEVHM--LTKEAFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred CCeEEEEEECccc--CCHHHHHHHHHHHhhcCCceEEEEEE
Confidence 4789999999993 33444455566555445556666654
No 333
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=91.24 E-value=0.6 Score=52.84 Aligned_cols=37 Identities=24% Similarity=0.329 Sum_probs=28.6
Q ss_pred HHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcCCc
Q 001729 33 EKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENME 69 (1020)
Q Consensus 33 ~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~~~ 69 (1020)
..++..+..++.+++.|++|+|||+.+-++....++.
T Consensus 55 ~~vl~~l~~~~~ilL~G~pGtGKTtla~~lA~~l~~~ 91 (327)
T TIGR01650 55 KAICAGFAYDRRVMVQGYHGTGKSTHIEQIAARLNWP 91 (327)
T ss_pred HHHHHHHhcCCcEEEEeCCCChHHHHHHHHHHHHCCC
Confidence 3466667778999999999999998777666555543
No 334
>PLN03025 replication factor C subunit; Provisional
Probab=91.18 E-value=0.37 Score=54.84 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=16.8
Q ss_pred cEEEEecCCCCCCcCChhhhh
Q 001729 43 RVTLIVGETGCGKSSQVPQFL 63 (1020)
Q Consensus 43 ~~vII~apTGSGKTt~ip~~l 63 (1020)
..+++.||+|+|||+.+-.+.
T Consensus 35 ~~lll~Gp~G~GKTtla~~la 55 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALA 55 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 478999999999997654443
No 335
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=91.15 E-value=0.19 Score=54.97 Aligned_cols=15 Identities=33% Similarity=0.638 Sum_probs=13.9
Q ss_pred cEEEEecCCCCCCcC
Q 001729 43 RVTLIVGETGCGKSS 57 (1020)
Q Consensus 43 ~~vII~apTGSGKTt 57 (1020)
+.+++.||+|-||||
T Consensus 53 DHvLl~GPPGlGKTT 67 (332)
T COG2255 53 DHVLLFGPPGLGKTT 67 (332)
T ss_pred CeEEeeCCCCCcHHH
Confidence 579999999999997
No 336
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=91.06 E-value=0.16 Score=57.66 Aligned_cols=33 Identities=27% Similarity=0.485 Sum_probs=24.6
Q ss_pred hHHHHHHH-HhhccEEEEecCCCCCCcCChhhhh
Q 001729 31 LREKIVEK-VLENRVTLIVGETGCGKSSQVPQFL 63 (1020)
Q Consensus 31 ~Q~eil~~-i~~~~~vII~apTGSGKTt~ip~~l 63 (1020)
.|.+.+.. +..+.+++|+|+|||||||.+-.++
T Consensus 136 ~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~ 169 (319)
T PRK13894 136 AQREAIIAAVRAHRNILVIGGTGSGKTTLVNAII 169 (319)
T ss_pred HHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHH
Confidence 35555554 5678999999999999997664443
No 337
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=91.02 E-value=0.24 Score=55.39 Aligned_cols=17 Identities=24% Similarity=0.378 Sum_probs=14.6
Q ss_pred cEEEEecCCCCCCcCCh
Q 001729 43 RVTLIVGETGCGKSSQV 59 (1020)
Q Consensus 43 ~~vII~apTGSGKTt~i 59 (1020)
..+++.||+|+|||+.+
T Consensus 59 ~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVA 75 (284)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 37999999999999754
No 338
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.95 E-value=0.32 Score=60.14 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=16.9
Q ss_pred cEEEEecCCCCCCcCChhhhhh
Q 001729 43 RVTLIVGETGCGKSSQVPQFLL 64 (1020)
Q Consensus 43 ~~vII~apTGSGKTt~ip~~ll 64 (1020)
..+|+.||.|+|||+.+-.+..
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lAk 60 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILAK 60 (620)
T ss_pred ceEEEECCCCCChHHHHHHHHH
Confidence 4569999999999976655443
No 339
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=90.88 E-value=0.16 Score=70.42 Aligned_cols=60 Identities=13% Similarity=0.238 Sum_probs=43.4
Q ss_pred cchhhhHHHHHHHHhhc--cEEEEecCCCCCCcCChh---hhh---hhcCCccccccCCceehhhhHH
Q 001729 26 LPVMSLREKIVEKVLEN--RVTLIVGETGCGKSSQVP---QFL---LAENMEPILCTQPRRFAVVAVA 85 (1020)
Q Consensus 26 LPi~~~Q~eil~~i~~~--~~vII~apTGSGKTt~ip---~~l---le~~~~~IivtqPrrlaa~sva 85 (1020)
..+++-|.+++..+..+ +.++|.|..|+||||.+- ..+ ++.....|+.+.|+--+|..+.
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa~~L~ 1085 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAVGELK 1085 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHH
Confidence 46899999999998754 788999999999998872 222 3333345777788766665553
No 340
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.77 E-value=0.55 Score=56.49 Aligned_cols=19 Identities=21% Similarity=0.427 Sum_probs=14.5
Q ss_pred EEEEecCCCCCCcCChhhh
Q 001729 44 VTLIVGETGCGKSSQVPQF 62 (1020)
Q Consensus 44 ~vII~apTGSGKTt~ip~~ 62 (1020)
..++.||.|+||||..-.+
T Consensus 40 ayLf~Gp~G~GKTtlAr~l 58 (486)
T PRK14953 40 AYIFAGPRGTGKTTIARIL 58 (486)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4588999999998755443
No 341
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=90.77 E-value=0.28 Score=54.49 Aligned_cols=61 Identities=21% Similarity=0.308 Sum_probs=35.7
Q ss_pred HHHHHHHhh----ccEEEEecCCCCCCcCChhhhhhh----cCCc-cccccCCceehhhhHHHHHhhccc
Q 001729 33 EKIVEKVLE----NRVTLIVGETGCGKSSQVPQFLLA----ENME-PILCTQPRRFAVVAVAKMVAKGRN 93 (1020)
Q Consensus 33 ~eil~~i~~----~~~vII~apTGSGKTt~ip~~lle----~~~~-~IivtqPrrlaa~sva~rva~e~~ 93 (1020)
+++.+.+.. .+.+.|.|..|+|||+.+.+++.+ .... .+.+...+.....++.+.+...++
T Consensus 6 ~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 6 EKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLG 75 (287)
T ss_dssp HHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHT
T ss_pred HHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccc
Confidence 455566655 578999999999999888776644 1222 233333333333445555555443
No 342
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=90.73 E-value=0.51 Score=57.82 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=16.2
Q ss_pred cEEEEecCCCCCCcCChhhhh
Q 001729 43 RVTLIVGETGCGKSSQVPQFL 63 (1020)
Q Consensus 43 ~~vII~apTGSGKTt~ip~~l 63 (1020)
+..|++||.|+|||+.+-.+.
T Consensus 39 hayLf~Gp~GtGKTt~Ak~lA 59 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKIFA 59 (559)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 457889999999997654443
No 343
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=90.72 E-value=0.27 Score=59.90 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=16.4
Q ss_pred cEEEEecCCCCCCcCChhhhh
Q 001729 43 RVTLIVGETGCGKSSQVPQFL 63 (1020)
Q Consensus 43 ~~vII~apTGSGKTt~ip~~l 63 (1020)
+..++.||.|+|||+.+-.+.
T Consensus 39 hA~Lf~GP~GvGKTTlA~~lA 59 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKIFA 59 (605)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 458899999999997654443
No 344
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.65 E-value=0.2 Score=63.40 Aligned_cols=59 Identities=10% Similarity=0.196 Sum_probs=37.9
Q ss_pred chhhhHHHHHHHH----hhccEEEEecCCCCCCcCChhhhhhh----cC-CccccccCCceehhhhHH
Q 001729 27 PVMSLREKIVEKV----LENRVTLIVGETGCGKSSQVPQFLLA----EN-MEPILCTQPRRFAVVAVA 85 (1020)
Q Consensus 27 Pi~~~Q~eil~~i----~~~~~vII~apTGSGKTt~ip~~lle----~~-~~~IivtqPrrlaa~sva 85 (1020)
|+++.|.+.++.+ .++++.++.+|||+|||..+.-..+. .+ ..+|++...+..-..++.
T Consensus 10 ~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i 77 (705)
T TIGR00604 10 KIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQAT 77 (705)
T ss_pred CCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHH
Confidence 5677888777665 46789999999999999655555443 22 135555544443333333
No 345
>PHA02533 17 large terminase protein; Provisional
Probab=90.64 E-value=0.84 Score=55.48 Aligned_cols=157 Identities=15% Similarity=0.145 Sum_probs=85.4
Q ss_pred cCcchhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhh----hcCCccccccCCceehhhhHHHHHhhcccc-ccCc
Q 001729 24 SSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLL----AENMEPILCTQPRRFAVVAVAKMVAKGRNC-ELGG 98 (1020)
Q Consensus 24 ~~LPi~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~ll----e~~~~~IivtqPrrlaa~sva~rva~e~~~-~lg~ 98 (1020)
..+++.+.|.+++..+..++-.++.-+=..|||+.+..+++ ......++++.|.+-.|..+.+++...... +--.
T Consensus 56 ~Pf~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l~ 135 (534)
T PHA02533 56 IKVQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQAIELLPDFL 135 (534)
T ss_pred eecCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHhCHHHh
Confidence 45889999999999987777788999999999977664432 122347888899888888777666532211 0000
Q ss_pred ccceec--cccccccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhccCCeEEEEee
Q 001729 99 EVGYHI--GHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (1020)
Q Consensus 99 ~Vgy~i--~~~~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmS 176 (1020)
..+... ...-....+..|.+.|.+- + ...-..++++||||+|...-..+++.. +...+......++++.|
T Consensus 136 ~~~i~~~~~~~I~l~NGS~I~~lss~~--~-----t~rG~~~~~liiDE~a~~~~~~e~~~a-i~p~lasg~~~r~iiiS 207 (534)
T PHA02533 136 QPGIVEWNKGSIELENGSKIGAYASSP--D-----AVRGNSFAMIYIDECAFIPNFIDFWLA-IQPVISSGRSSKIIITS 207 (534)
T ss_pred hcceeecCccEEEeCCCCEEEEEeCCC--C-----ccCCCCCceEEEeccccCCCHHHHHHH-HHHHHHcCCCceEEEEE
Confidence 011100 0000112345565555331 1 111126778999999942211122222 22223333345666666
Q ss_pred cccchhhhhHHH
Q 001729 177 ATADITKYRDYF 188 (1020)
Q Consensus 177 ATld~~~~~~~f 188 (1020)
..-....|-+.+
T Consensus 208 Tp~G~n~fye~~ 219 (534)
T PHA02533 208 TPNGLNHFYDIW 219 (534)
T ss_pred CCCchhhHHHHH
Confidence 653223244444
No 346
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=90.63 E-value=0.52 Score=53.38 Aligned_cols=19 Identities=21% Similarity=0.326 Sum_probs=14.3
Q ss_pred EEEEecCCCCCCcCChhhh
Q 001729 44 VTLIVGETGCGKSSQVPQF 62 (1020)
Q Consensus 44 ~vII~apTGSGKTt~ip~~ 62 (1020)
.+++.||+|+|||+.+-.+
T Consensus 45 ~lll~G~~G~GKT~la~~l 63 (316)
T PHA02544 45 MLLHSPSPGTGKTTVAKAL 63 (316)
T ss_pred EEEeeCcCCCCHHHHHHHH
Confidence 4555899999999865444
No 347
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=90.56 E-value=0.12 Score=57.15 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=20.7
Q ss_pred hhccEEEEecCCCCCCcCChhhhhh
Q 001729 40 LENRVTLIVGETGCGKSSQVPQFLL 64 (1020)
Q Consensus 40 ~~~~~vII~apTGSGKTt~ip~~ll 64 (1020)
..+.+++|+|+|||||||.+-.++.
T Consensus 125 ~~~~~ili~G~tGSGKTT~l~all~ 149 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLLNALLE 149 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCccccchHHHHHhh
Confidence 4579999999999999998755543
No 348
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.51 E-value=0.39 Score=59.11 Aligned_cols=39 Identities=23% Similarity=0.433 Sum_probs=23.3
Q ss_pred ceeEEEEeecccccccccceeehhhhhHhhccCCeEEEEee
Q 001729 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (1020)
Q Consensus 136 ~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmS 176 (1020)
.++.++||||+|. +..+-...++|.+-.-.+...+|+.+
T Consensus 118 ~~~KVvIIdev~~--Lt~~a~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 118 SRYKIFIIDEVHM--LSTNAFNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred CCceEEEEEChhh--CCHHHHHHHHHHHHcCCCCeEEEEEe
Confidence 3899999999993 33333344555554434455555544
No 349
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=90.41 E-value=0.71 Score=53.45 Aligned_cols=39 Identities=28% Similarity=0.451 Sum_probs=24.8
Q ss_pred CcchhhhHHHHHHHHh-----h--ccEEEEecCCCCCCcCChhhhhh
Q 001729 25 SLPVMSLREKIVEKVL-----E--NRVTLIVGETGCGKSSQVPQFLL 64 (1020)
Q Consensus 25 ~LPi~~~Q~eil~~i~-----~--~~~vII~apTGSGKTt~ip~~ll 64 (1020)
.||-+.-|-+-+..+. . ..+++|.|+||+|||..+ +++.
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~-~~v~ 63 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATV-KFVM 63 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHH-HHHH
Confidence 3776665555444333 2 246999999999999644 4443
No 350
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=90.36 E-value=0.26 Score=50.67 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=17.0
Q ss_pred EEEEecCCCCCCcCChhhhhhh
Q 001729 44 VTLIVGETGCGKSSQVPQFLLA 65 (1020)
Q Consensus 44 ~vII~apTGSGKTt~ip~~lle 65 (1020)
+++|+|+.|+||||.+...+-.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHH
Confidence 4789999999999988766543
No 351
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.35 E-value=0.71 Score=57.37 Aligned_cols=34 Identities=24% Similarity=0.503 Sum_probs=27.2
Q ss_pred hHHHHHHHHhh---ccEEEEecCCCCCCcCChhhhhh
Q 001729 31 LREKIVEKVLE---NRVTLIVGETGCGKSSQVPQFLL 64 (1020)
Q Consensus 31 ~Q~eil~~i~~---~~~vII~apTGSGKTt~ip~~ll 64 (1020)
.+.+++..+.+ .+.++|++|-|+||||.+.++..
T Consensus 23 ~R~rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~ 59 (894)
T COG2909 23 VRPRLLDRLRRANDYRLILISAPAGFGKTTLLAQWRE 59 (894)
T ss_pred ccHHHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHH
Confidence 35566666654 47899999999999999999963
No 352
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=90.34 E-value=0.17 Score=52.70 Aligned_cols=32 Identities=28% Similarity=0.365 Sum_probs=24.0
Q ss_pred hhHHHHHHH-HhhccEEEEecCCCCCCcCChhh
Q 001729 30 SLREKIVEK-VLENRVTLIVGETGCGKSSQVPQ 61 (1020)
Q Consensus 30 ~~Q~eil~~-i~~~~~vII~apTGSGKTt~ip~ 61 (1020)
+.+.+.+.. +..+.+++|+|||||||||.+-.
T Consensus 12 ~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll~a 44 (186)
T cd01130 12 PLQAAYLWLAVEARKNILISGGTGSGKTTLLNA 44 (186)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHH
Confidence 345555555 45688999999999999986643
No 353
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=90.32 E-value=0.21 Score=56.71 Aligned_cols=33 Identities=18% Similarity=0.325 Sum_probs=24.0
Q ss_pred hhHHHHHHH-HhhccEEEEecCCCCCCcCChhhh
Q 001729 30 SLREKIVEK-VLENRVTLIVGETGCGKSSQVPQF 62 (1020)
Q Consensus 30 ~~Q~eil~~-i~~~~~vII~apTGSGKTt~ip~~ 62 (1020)
+.|.+.+.. +..+.+++|+|+|||||||.+-.+
T Consensus 131 ~~~~~~L~~~v~~~~nilI~G~tGSGKTTll~aL 164 (323)
T PRK13833 131 EAQASVIRSAIDSRLNIVISGGTGSGKTTLANAV 164 (323)
T ss_pred HHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHH
Confidence 445555544 456789999999999999876443
No 354
>PRK13342 recombination factor protein RarA; Reviewed
Probab=90.32 E-value=0.41 Score=56.49 Aligned_cols=20 Identities=20% Similarity=0.385 Sum_probs=16.1
Q ss_pred cEEEEecCCCCCCcCChhhh
Q 001729 43 RVTLIVGETGCGKSSQVPQF 62 (1020)
Q Consensus 43 ~~vII~apTGSGKTt~ip~~ 62 (1020)
..+++.||+|+||||.+-.+
T Consensus 37 ~~ilL~GppGtGKTtLA~~i 56 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARII 56 (413)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 37899999999999765443
No 355
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=90.30 E-value=0.51 Score=48.39 Aligned_cols=21 Identities=38% Similarity=0.681 Sum_probs=16.8
Q ss_pred EEEEecCCCCCCcCChhhhhh
Q 001729 44 VTLIVGETGCGKSSQVPQFLL 64 (1020)
Q Consensus 44 ~vII~apTGSGKTt~ip~~ll 64 (1020)
.+++.|++|+||||....+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999987665543
No 356
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=90.28 E-value=0.18 Score=56.81 Aligned_cols=29 Identities=38% Similarity=0.613 Sum_probs=22.1
Q ss_pred HHHHHhhccEEEEecCCCCCCcCChhhhh
Q 001729 35 IVEKVLENRVTLIVGETGCGKSSQVPQFL 63 (1020)
Q Consensus 35 il~~i~~~~~vII~apTGSGKTt~ip~~l 63 (1020)
+..++..+.+++|+|+|||||||.+-.++
T Consensus 125 L~~~v~~~~~ilI~G~tGSGKTTll~al~ 153 (299)
T TIGR02782 125 LREAVLARKNILVVGGTGSGKTTLANALL 153 (299)
T ss_pred HHHHHHcCCeEEEECCCCCCHHHHHHHHH
Confidence 33445667899999999999998765444
No 357
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=90.26 E-value=0.2 Score=57.40 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=20.7
Q ss_pred HHhhccEEEEecCCCCCCcCChhhhh
Q 001729 38 KVLENRVTLIVGETGCGKSSQVPQFL 63 (1020)
Q Consensus 38 ~i~~~~~vII~apTGSGKTt~ip~~l 63 (1020)
++..+.+++|+|+|||||||.+-.++
T Consensus 158 ~v~~~~nilI~G~tGSGKTTll~aLl 183 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTMSKTLI 183 (344)
T ss_pred HHHcCCeEEEECCCCccHHHHHHHHH
Confidence 34577899999999999998764443
No 358
>PRK10867 signal recognition particle protein; Provisional
Probab=90.25 E-value=0.4 Score=56.61 Aligned_cols=119 Identities=15% Similarity=0.181 Sum_probs=63.6
Q ss_pred cEEEEecCCCCCCcCChhhhhh---hc-CCc-cccccCCceehhhhHHHHHhhccccccCcccceeccccccccccceEE
Q 001729 43 RVTLIVGETGCGKSSQVPQFLL---AE-NME-PILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIV 117 (1020)
Q Consensus 43 ~~vII~apTGSGKTt~ip~~ll---e~-~~~-~IivtqPrrlaa~sva~rva~e~~~~lg~~Vgy~i~~~~~~~~~t~Ii 117 (1020)
.+++++|++|+||||.+..+.. .. +.+ .++-+-+.|.+|....+.+++..+.++- ....
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~-----~~~~----------- 164 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVF-----PSGD----------- 164 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEE-----ecCC-----------
Confidence 4788999999999987666543 33 333 3455667777776555555554443211 0000
Q ss_pred eeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhh-ccCCeEEEEeeccc
Q 001729 118 FKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLL-KKNDLRVVLMSATA 179 (1020)
Q Consensus 118 v~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~-~~~~lkiIlmSATl 179 (1020)
-..|.-+....... ....++++||||=+= |....+-+...+..+.. ..|+--+++++|+.
T Consensus 165 ~~dp~~i~~~a~~~-a~~~~~DvVIIDTaG-rl~~d~~lm~eL~~i~~~v~p~evllVlda~~ 225 (433)
T PRK10867 165 GQDPVDIAKAALEE-AKENGYDVVIVDTAG-RLHIDEELMDELKAIKAAVNPDEILLVVDAMT 225 (433)
T ss_pred CCCHHHHHHHHHHH-HHhcCCCEEEEeCCC-CcccCHHHHHHHHHHHHhhCCCeEEEEEeccc
Confidence 01233333221111 012268999999997 44333333333333322 24555588888886
No 359
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=90.16 E-value=0.47 Score=54.94 Aligned_cols=41 Identities=20% Similarity=0.267 Sum_probs=26.7
Q ss_pred eeEEEEeecccccccccceeehhhhhHhhccCCeEEEEeeccc
Q 001729 137 KYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATA 179 (1020)
Q Consensus 137 ~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmSATl 179 (1020)
.+.+|||||+|. ++......++|.+-...+...+|++|...
T Consensus 141 ~~kVviIDead~--m~~~aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 141 GWRVVIVDTADE--MNANAANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred CCEEEEEechHh--cCHHHHHHHHHHHhcCCCCeEEEEEECCc
Confidence 789999999993 34455556666665444455566655443
No 360
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=90.16 E-value=0.39 Score=50.04 Aligned_cols=30 Identities=17% Similarity=0.273 Sum_probs=21.3
Q ss_pred HHHHHHhhc---cEEEEecCCCCCCcCChhhhh
Q 001729 34 KIVEKVLEN---RVTLIVGETGCGKSSQVPQFL 63 (1020)
Q Consensus 34 eil~~i~~~---~~vII~apTGSGKTt~ip~~l 63 (1020)
.+...+.++ +..++.||+|+|||+.+-.+.
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~ 35 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALA 35 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 345556555 468999999999997654443
No 361
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=90.14 E-value=0.29 Score=66.45 Aligned_cols=122 Identities=19% Similarity=0.236 Sum_probs=70.2
Q ss_pred cchhhhHHHHHHHHhh--ccEEEEecCCCCCCcCChhhhh--hh----cCCccccccCCceehhhhHHHHHhhccccccC
Q 001729 26 LPVMSLREKIVEKVLE--NRVTLIVGETGCGKSSQVPQFL--LA----ENMEPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (1020)
Q Consensus 26 LPi~~~Q~eil~~i~~--~~~vII~apTGSGKTt~ip~~l--le----~~~~~IivtqPrrlaa~sva~rva~e~~~~lg 97 (1020)
..+.+-|.+++..++. ++.++|.|..|+||||.+-..+ ++ .....|+.+.|+--+|..+.+ .|.. .
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L~e-----~Gi~-A 1039 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGEMRS-----AGVD-A 1039 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHHHHHh-----cCcc-h
Confidence 3578999999999986 4799999999999998764432 21 112356667776665544332 2211 0
Q ss_pred cccceeccccccccccceEEeeechhhhHHH----HHhccccceeEEEEeecccccccccceeehhhhhHhhccCCeEEE
Q 001729 98 GEVGYHIGHSKHLSERSKIVFKTAGVLLDEM----RDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVV 173 (1020)
Q Consensus 98 ~~Vgy~i~~~~~~~~~t~Iiv~Tpg~Ll~~l----~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiI 173 (1020)
.|-..|+... ..........++|||||+= +++...+..+++.+. ....|+|
T Consensus 1040 ---------------------~TI~s~L~~~~~~~~~~~~~~~~~~llIVDEaS--Mv~~~~m~~Ll~~~~--~~garvV 1094 (1747)
T PRK13709 1040 ---------------------QTLASFLHDTQLQQRSGETPDFSNTLFLLDESS--MVGNTDMARAYALIA--AGGGRAV 1094 (1747)
T ss_pred ---------------------hhHHHHhcccccccccccCCCCCCcEEEEEccc--cccHHHHHHHHHhhh--cCCCEEE
Confidence 1111121110 0001111256899999997 455544444444432 2356888
Q ss_pred Eeecc
Q 001729 174 LMSAT 178 (1020)
Q Consensus 174 lmSAT 178 (1020)
++-=+
T Consensus 1095 LVGD~ 1099 (1747)
T PRK13709 1095 SSGDT 1099 (1747)
T ss_pred Eecch
Confidence 87655
No 362
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.05 E-value=0.19 Score=55.36 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=20.2
Q ss_pred hccEEEEecCCCCCCcCChhhhhhh
Q 001729 41 ENRVTLIVGETGCGKSSQVPQFLLA 65 (1020)
Q Consensus 41 ~~~~vII~apTGSGKTt~ip~~lle 65 (1020)
...-++|.|||||||||.+..++-.
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~ 148 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDY 148 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHH
Confidence 4567899999999999888776643
No 363
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=90.05 E-value=0.18 Score=52.22 Aligned_cols=44 Identities=30% Similarity=0.311 Sum_probs=27.6
Q ss_pred EEEEecCCCCCCcCChhhhhhhcCC--ccccccCCceehhhhHHHHH
Q 001729 44 VTLIVGETGCGKSSQVPQFLLAENM--EPILCTQPRRFAVVAVAKMV 88 (1020)
Q Consensus 44 ~vII~apTGSGKTt~ip~~lle~~~--~~IivtqPrrlaa~sva~rv 88 (1020)
.++|.||+|+|||+...+++.+... .+++++.. .....++.++.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~-e~~~~~~~~~~ 46 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL-EESPEELIENA 46 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC-CCCHHHHHHHH
Confidence 3789999999999888887765422 24444332 33445554443
No 364
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=90.02 E-value=0.32 Score=55.53 Aligned_cols=36 Identities=14% Similarity=0.343 Sum_probs=27.0
Q ss_pred chhhhHHHHHHHHhhc----cEEEEecCCCCCCcCChhhh
Q 001729 27 PVMSLREKIVEKVLEN----RVTLIVGETGCGKSSQVPQF 62 (1020)
Q Consensus 27 Pi~~~Q~eil~~i~~~----~~vII~apTGSGKTt~ip~~ 62 (1020)
+++|.|....+.+... .-.++.||.|.|||+.+-.+
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~ 42 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERL 42 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHH
Confidence 4577888888887643 35889999999999755444
No 365
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=89.94 E-value=0.3 Score=58.76 Aligned_cols=40 Identities=23% Similarity=0.369 Sum_probs=28.7
Q ss_pred cCcchhhhHHHHHHHHhh--ccEEEEecCCCCCCcCChhhhh
Q 001729 24 SSLPVMSLREKIVEKVLE--NRVTLIVGETGCGKSSQVPQFL 63 (1020)
Q Consensus 24 ~~LPi~~~Q~eil~~i~~--~~~vII~apTGSGKTt~ip~~l 63 (1020)
..|-+.+.+.+.+..+.. +..++|+|||||||||.+-.++
T Consensus 222 ~~Lg~~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL~a~L 263 (486)
T TIGR02533 222 ETLGMSPELLSRFERLIRRPHGIILVTGPTGSGKTTTLYAAL 263 (486)
T ss_pred HHcCCCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 346666767777766543 3578999999999998775444
No 366
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=89.86 E-value=0.11 Score=52.70 Aligned_cols=26 Identities=38% Similarity=0.659 Sum_probs=23.7
Q ss_pred CCCccceeccCCCCCCCCCccCCCCC
Q 001729 764 RPACKFFYSLQGCRNGDSCIFSHDLG 789 (1020)
Q Consensus 764 ~~~C~~f~~~g~C~~g~~C~f~H~~~ 789 (1020)
..+|+-|-++|+|-|||.|+|.|...
T Consensus 141 pdVCKdyk~TGYCGYGDsCKflH~R~ 166 (259)
T COG5152 141 PDVCKDYKETGYCGYGDSCKFLHDRS 166 (259)
T ss_pred cccccchhhcccccCCchhhhhhhhh
Confidence 45799999999999999999999884
No 367
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=89.86 E-value=1 Score=54.81 Aligned_cols=106 Identities=18% Similarity=0.345 Sum_probs=63.9
Q ss_pred cchhhhHHHHHHHHh--------hccEEEEecCCCCCCcCChhhhhhhcCCccccccCCceehhhhHHHHHhhcc-cccc
Q 001729 26 LPVMSLREKIVEKVL--------ENRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGR-NCEL 96 (1020)
Q Consensus 26 LPi~~~Q~eil~~i~--------~~~~vII~apTGSGKTt~ip~~lle~~~~~IivtqPrrlaa~sva~rva~e~-~~~l 96 (1020)
.-+..++++|++.|. +|+.+.++||+|-|||. .+.++|+.+.+++ ...+
T Consensus 414 Ygm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTS----------------------I~kSIA~ALnRkFfRfSv 471 (906)
T KOG2004|consen 414 YGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTS----------------------IAKSIARALNRKFFRFSV 471 (906)
T ss_pred cchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCccc----------------------HHHHHHHHhCCceEEEec
Confidence 446678899999875 46789999999999995 3455555554432 2333
Q ss_pred Ccccceeccccccccccce-EEeeechhhhHHHHHhccccceeEEEEeecccc--cccccceeehhhh
Q 001729 97 GGEVGYHIGHSKHLSERSK-IVFKTAGVLLDEMRDRGLNALKYKVIILDEVHE--RSVESDLVLVCVK 161 (1020)
Q Consensus 97 g~~Vgy~i~~~~~~~~~t~-Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHE--R~l~~d~ll~~lk 161 (1020)
|+... ........+ -+=+-||.+.+.+..-.. .--+|.|||++. ++...|..-++|.
T Consensus 472 GG~tD-----vAeIkGHRRTYVGAMPGkiIq~LK~v~t---~NPliLiDEvDKlG~g~qGDPasALLE 531 (906)
T KOG2004|consen 472 GGMTD-----VAEIKGHRRTYVGAMPGKIIQCLKKVKT---ENPLILIDEVDKLGSGHQGDPASALLE 531 (906)
T ss_pred ccccc-----HHhhcccceeeeccCChHHHHHHHhhCC---CCceEEeehhhhhCCCCCCChHHHHHH
Confidence 43211 111111112 223459999998875332 335799999996 4455555544443
No 368
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=89.81 E-value=0.25 Score=49.76 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=17.3
Q ss_pred cEEEEecCCCCCCcCChhhhh
Q 001729 43 RVTLIVGETGCGKSSQVPQFL 63 (1020)
Q Consensus 43 ~~vII~apTGSGKTt~ip~~l 63 (1020)
-.+.|+|++|+||||.+....
T Consensus 6 mki~ITG~PGvGKtTl~~ki~ 26 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIA 26 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHH
Confidence 468999999999999776653
No 369
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=89.72 E-value=0.32 Score=56.62 Aligned_cols=23 Identities=30% Similarity=0.252 Sum_probs=19.6
Q ss_pred HHHhhccEEEEecCCCCCCcCCh
Q 001729 37 EKVLENRVTLIVGETGCGKSSQV 59 (1020)
Q Consensus 37 ~~i~~~~~vII~apTGSGKTt~i 59 (1020)
+.+.++.|++..||+|+|||+.+
T Consensus 204 ~fve~~~Nli~lGp~GTGKThla 226 (449)
T TIGR02688 204 PLVEPNYNLIELGPKGTGKSYIY 226 (449)
T ss_pred HHHhcCCcEEEECCCCCCHHHHH
Confidence 55678899999999999999643
No 370
>PRK04195 replication factor C large subunit; Provisional
Probab=89.61 E-value=0.66 Score=55.95 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=19.9
Q ss_pred ccEEEEecCCCCCCcCChhhhhhhcC
Q 001729 42 NRVTLIVGETGCGKSSQVPQFLLAEN 67 (1020)
Q Consensus 42 ~~~vII~apTGSGKTt~ip~~lle~~ 67 (1020)
.+.++|.||+|+|||+.+-.++.+.+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~ 64 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYG 64 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999986655544433
No 371
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=89.31 E-value=0.1 Score=56.30 Aligned_cols=30 Identities=43% Similarity=0.906 Sum_probs=26.5
Q ss_pred cCCCCCCccceeccCCCCCCCCCccCCCCCC
Q 001729 760 LQAKRPACKFFYSLQGCRNGDSCIFSHDLGQ 790 (1020)
Q Consensus 760 ~~~~~~~C~~f~~~g~C~~g~~C~f~H~~~~ 790 (1020)
..++..+|-|| ..|.|..|+.|+|+|++..
T Consensus 88 vDPKSvvCafF-k~g~C~KG~kCKFsHdl~~ 117 (343)
T KOG1763|consen 88 VDPKSVVCAFF-KQGTCTKGDKCKFSHDLAV 117 (343)
T ss_pred CCchHHHHHHH-hccCCCCCCcccccchHHH
Confidence 36778899999 8899999999999998854
No 372
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=89.30 E-value=0.47 Score=60.96 Aligned_cols=16 Identities=44% Similarity=0.775 Sum_probs=13.7
Q ss_pred EEEEecCCCCCCcCCh
Q 001729 44 VTLIVGETGCGKSSQV 59 (1020)
Q Consensus 44 ~vII~apTGSGKTt~i 59 (1020)
++++.||||+|||...
T Consensus 598 ~~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 598 VFLLVGPSGVGKTETA 613 (852)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999543
No 373
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.28 E-value=0.3 Score=49.27 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=18.5
Q ss_pred HhhccEEEEecCCCCCCcCChhh
Q 001729 39 VLENRVTLIVGETGCGKSSQVPQ 61 (1020)
Q Consensus 39 i~~~~~vII~apTGSGKTt~ip~ 61 (1020)
+..++.+.|.|++|+||||.+-.
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~ 44 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRA 44 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 34678999999999999975533
No 374
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.18 E-value=0.82 Score=55.24 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=15.8
Q ss_pred EEEEecCCCCCCcCChhhhh
Q 001729 44 VTLIVGETGCGKSSQVPQFL 63 (1020)
Q Consensus 44 ~vII~apTGSGKTt~ip~~l 63 (1020)
.++++||.|+||||.+-.+.
T Consensus 38 a~Lf~GppGtGKTTlA~~lA 57 (504)
T PRK14963 38 AYLFSGPRGVGKTTTARLIA 57 (504)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 35999999999998765443
No 375
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=89.12 E-value=0.66 Score=58.75 Aligned_cols=116 Identities=16% Similarity=0.221 Sum_probs=67.2
Q ss_pred hhhhHHHHHHHHh----hccEEEEecCCCCCCcCChhhhhh-----hcCCccccccCCceehhhh-H-HHHHhhcccccc
Q 001729 28 VMSLREKIVEKVL----ENRVTLIVGETGCGKSSQVPQFLL-----AENMEPILCTQPRRFAVVA-V-AKMVAKGRNCEL 96 (1020)
Q Consensus 28 i~~~Q~eil~~i~----~~~~vII~apTGSGKTt~ip~~ll-----e~~~~~IivtqPrrlaa~s-v-a~rva~e~~~~l 96 (1020)
++.||..-++.+. +|-|-|+.-+-|-|||.|...++. +.+|+.=+|+.|+-++... + .+|++-.+. +
T Consensus 616 LReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLnWEMElKRwcPglK--I 693 (1958)
T KOG0391|consen 616 LREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILNWEMELKRWCPGLK--I 693 (1958)
T ss_pred HHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhhhhHHHhhhCCcce--E
Confidence 5678888777763 667889999999999987666543 3455544444454443221 1 223322211 1
Q ss_pred Cccccee-----ccccccccccceEEeeechhhhHHHHHhccccceeEEEEeeccc
Q 001729 97 GGEVGYH-----IGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVH 147 (1020)
Q Consensus 97 g~~Vgy~-----i~~~~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaH 147 (1020)
-...|-. -|.........+|.|+.+..+++-+.. +.-.++.++||||||
T Consensus 694 LTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~A--FkrkrWqyLvLDEaq 747 (1958)
T KOG0391|consen 694 LTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTA--FKRKRWQYLVLDEAQ 747 (1958)
T ss_pred eeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHH--HHhhccceeehhhhh
Confidence 1111111 011122234568888888887765542 122388999999999
No 376
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=89.03 E-value=0.92 Score=53.09 Aligned_cols=40 Identities=10% Similarity=0.221 Sum_probs=23.4
Q ss_pred ceeEEEEeecccccccccceeehhhhhHhhccCCeEEEEeecc
Q 001729 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (1020)
Q Consensus 136 ~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmSAT 178 (1020)
.++.++||||+|. . +......++|.+ ...++-.++++.||
T Consensus 116 ~~~kViiIDead~-m-~~~aanaLLk~L-Eep~~~~~fIL~a~ 155 (394)
T PRK07940 116 GRWRIVVIEDADR-L-TERAANALLKAV-EEPPPRTVWLLCAP 155 (394)
T ss_pred CCcEEEEEechhh-c-CHHHHHHHHHHh-hcCCCCCeEEEEEC
Confidence 3789999999993 3 223334455544 33444445555555
No 377
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=88.96 E-value=0.28 Score=56.11 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=20.2
Q ss_pred HHhhccEEEEecCCCCCCcCChhhh
Q 001729 38 KVLENRVTLIVGETGCGKSSQVPQF 62 (1020)
Q Consensus 38 ~i~~~~~vII~apTGSGKTt~ip~~ 62 (1020)
++..+.+++|+|+|||||||.+-.+
T Consensus 156 ~v~~~~nili~G~tgSGKTTll~aL 180 (332)
T PRK13900 156 AVISKKNIIISGGTSTGKTTFTNAA 180 (332)
T ss_pred HHHcCCcEEEECCCCCCHHHHHHHH
Confidence 3456789999999999999877443
No 378
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=88.96 E-value=0.16 Score=43.05 Aligned_cols=19 Identities=47% Similarity=0.707 Sum_probs=16.1
Q ss_pred ccEEEEecCCCCCCcCChh
Q 001729 42 NRVTLIVGETGCGKSSQVP 60 (1020)
Q Consensus 42 ~~~vII~apTGSGKTt~ip 60 (1020)
+.+++|.|++||||||.+-
T Consensus 23 g~~tli~G~nGsGKSTllD 41 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLLD 41 (62)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4589999999999998653
No 379
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=88.92 E-value=0.3 Score=61.47 Aligned_cols=59 Identities=12% Similarity=0.131 Sum_probs=39.3
Q ss_pred cchhhhHHHHHHHHh----h-----ccEEEEecCCCCCCcCChhhhhhh--c-CCccccccCCceehhhhH
Q 001729 26 LPVMSLREKIVEKVL----E-----NRVTLIVGETGCGKSSQVPQFLLA--E-NMEPILCTQPRRFAVVAV 84 (1020)
Q Consensus 26 LPi~~~Q~eil~~i~----~-----~~~vII~apTGSGKTt~ip~~lle--~-~~~~IivtqPrrlaa~sv 84 (1020)
+-.++-|.+.+..|. + ++.++|.|+||+|||.++..+.+- . ..++|||...|..+-.|+
T Consensus 24 ~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~~k~vVIST~T~~LQeQL 94 (697)
T PRK11747 24 FIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAEKKKLVISTATVALQEQL 94 (697)
T ss_pred CCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHcCCeEEEEcCCHHHHHHH
Confidence 445666777666654 3 378999999999999666555432 2 335677777776665555
No 380
>PRK11823 DNA repair protein RadA; Provisional
Probab=88.87 E-value=0.42 Score=56.93 Aligned_cols=46 Identities=22% Similarity=0.194 Sum_probs=30.5
Q ss_pred hccEEEEecCCCCCCcCChhhhhhhcC--CccccccCCceehhhhHHHH
Q 001729 41 ENRVTLIVGETGCGKSSQVPQFLLAEN--MEPILCTQPRRFAVVAVAKM 87 (1020)
Q Consensus 41 ~~~~vII~apTGSGKTt~ip~~lle~~--~~~IivtqPrrlaa~sva~r 87 (1020)
.+..++|.|++|+||||.+.+++.+.. ..+++++.. +....++..+
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~-Ees~~qi~~r 126 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSG-EESASQIKLR 126 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc-cccHHHHHHH
Confidence 467999999999999998888876543 234444433 2333445444
No 381
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=88.85 E-value=0.55 Score=55.23 Aligned_cols=76 Identities=13% Similarity=0.183 Sum_probs=52.6
Q ss_pred hhhHHHHHHHHhhc-----cEEEEecCCCCCCcCChhhhhhhcCCccccccCCceehhhhHHHHHhhccccccCccccee
Q 001729 29 MSLREKIVEKVLEN-----RVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYH 103 (1020)
Q Consensus 29 ~~~Q~eil~~i~~~-----~~vII~apTGSGKTt~ip~~lle~~~~~IivtqPrrlaa~sva~rva~e~~~~lg~~Vgy~ 103 (1020)
..-|-++|+.+.++ +.-++.|-||||||+.+...|.+-.. ..+|..|...+|-|++..+.+.+.. ..|-|.
T Consensus 14 aGDQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT~AnVI~~~~r-PtLV~AhNKTLAaQLy~Efk~fFP~---NaVEYF 89 (663)
T COG0556 14 AGDQPEAIAELVEGIENGLKHQTLLGVTGSGKTFTMANVIAKVQR-PTLVLAHNKTLAAQLYSEFKEFFPE---NAVEYF 89 (663)
T ss_pred CCCcHHHHHHHHHHHhcCceeeEEeeeccCCchhHHHHHHHHhCC-CeEEEecchhHHHHHHHHHHHhCcC---cceEEE
Confidence 33455666665432 56788999999999888887766554 5566778888888888888776643 345566
Q ss_pred ccccc
Q 001729 104 IGHSK 108 (1020)
Q Consensus 104 i~~~~ 108 (1020)
|..-+
T Consensus 90 VSYYD 94 (663)
T COG0556 90 VSYYD 94 (663)
T ss_pred eeecc
Confidence 55433
No 382
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=88.77 E-value=0.8 Score=51.68 Aligned_cols=20 Identities=25% Similarity=0.424 Sum_probs=16.0
Q ss_pred cEEEEecCCCCCCcCChhhh
Q 001729 43 RVTLIVGETGCGKSSQVPQF 62 (1020)
Q Consensus 43 ~~vII~apTGSGKTt~ip~~ 62 (1020)
..+++.||+|+|||+.+-.+
T Consensus 39 ~~~ll~G~~G~GKt~~~~~l 58 (319)
T PRK00440 39 PHLLFAGPPGTGKTTAALAL 58 (319)
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 36899999999999755443
No 383
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.73 E-value=0.67 Score=53.77 Aligned_cols=20 Identities=25% Similarity=0.459 Sum_probs=16.0
Q ss_pred cEEEEecCCCCCCcCChhhh
Q 001729 43 RVTLIVGETGCGKSSQVPQF 62 (1020)
Q Consensus 43 ~~vII~apTGSGKTt~ip~~ 62 (1020)
+.+++.||.|+|||+.+-.+
T Consensus 40 ~~~L~~G~~G~GKt~~a~~l 59 (367)
T PRK14970 40 QALLFCGPRGVGKTTCARIL 59 (367)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 37899999999999755444
No 384
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.63 E-value=0.17 Score=57.34 Aligned_cols=23 Identities=43% Similarity=1.018 Sum_probs=11.7
Q ss_pred ccceeeccccccCCCCCCCCcCc
Q 001729 738 PLCVYFINGSCNRGTGCPFSHSL 760 (1020)
Q Consensus 738 ~~C~~f~~G~C~~G~~C~f~H~~ 760 (1020)
.+|+||..|.|++|+.|+|+|+.
T Consensus 9 tic~~~~~g~c~~g~~cr~~h~~ 31 (344)
T KOG1039|consen 9 TICKYYQKGNCKFGDLCRLSHSL 31 (344)
T ss_pred hhhhhcccccccccceeeeeccC
Confidence 34555555555555555555543
No 385
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=88.63 E-value=0.22 Score=53.20 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=17.4
Q ss_pred cEEEEecCCCCCCcCChhhhh
Q 001729 43 RVTLIVGETGCGKSSQVPQFL 63 (1020)
Q Consensus 43 ~~vII~apTGSGKTt~ip~~l 63 (1020)
+.++|+||.|+||||.+-...
T Consensus 30 ~~~~itGpNg~GKStlLk~i~ 50 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVA 50 (213)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 789999999999998665543
No 386
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.61 E-value=0.73 Score=56.91 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=16.4
Q ss_pred cEEEEecCCCCCCcCChhhhh
Q 001729 43 RVTLIVGETGCGKSSQVPQFL 63 (1020)
Q Consensus 43 ~~vII~apTGSGKTt~ip~~l 63 (1020)
+..|++||.|+||||.+-.+.
T Consensus 39 ha~Lf~Gp~GvGKttlA~~lA 59 (620)
T PRK14954 39 HGYIFSGLRGVGKTTAARVFA 59 (620)
T ss_pred eeEEEECCCCCCHHHHHHHHH
Confidence 358899999999998664443
No 387
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=88.49 E-value=0.48 Score=53.37 Aligned_cols=30 Identities=30% Similarity=0.420 Sum_probs=20.6
Q ss_pred cchhhHHH-HHHHHhhhhhcCCCCccCccccch
Q 001729 451 EVVGDALD-LLDHKRALQKISPRGRYEPTFYGR 482 (1020)
Q Consensus 451 ~~i~~al~-~L~~lgald~~~~~g~~~lT~lG~ 482 (1020)
..+...++ .|.+.|.|.. ...|+ ..|..|.
T Consensus 270 ~~~~~~~e~~Li~~~li~~-~~~g~-~~~~~~~ 300 (305)
T TIGR00635 270 DTIEDVYEPYLLQIGFLQR-TPRGR-IATELAY 300 (305)
T ss_pred chHHHhhhHHHHHcCCccc-CCchh-hhhHHHH
Confidence 45667677 6999999876 44564 4677765
No 388
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=88.49 E-value=0.71 Score=54.28 Aligned_cols=103 Identities=18% Similarity=0.327 Sum_probs=59.9
Q ss_pred EEEEecCCCCCCcCChhhhhhhcCCccccccCCceehhhhHHHHHhhccccccCcccceeccccccccccceEEeeechh
Q 001729 44 VTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVFKTAGV 123 (1020)
Q Consensus 44 ~vII~apTGSGKTt~ip~~lle~~~~~IivtqPrrlaa~sva~rva~e~~~~lg~~Vgy~i~~~~~~~~~t~Iiv~Tpg~ 123 (1020)
.+++.||.|||||+...++.+.....-|=++.|....-.+-..+++.
T Consensus 540 SvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~--------------------------------- 586 (744)
T KOG0741|consen 540 SVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAH--------------------------------- 586 (744)
T ss_pred EEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHH---------------------------------
Confidence 68999999999998888887777766555555543322111111110
Q ss_pred hhHHHHHhccccceeEEEEeeccccccccc--------ceeehhhhhHhhccCC--eEEEEeecccchh
Q 001729 124 LLDEMRDRGLNALKYKVIILDEVHERSVES--------DLVLVCVKQLLLKKND--LRVVLMSATADIT 182 (1020)
Q Consensus 124 Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~--------d~ll~~lk~ll~~~~~--lkiIlmSATld~~ 182 (1020)
+.+.+.+. .-+..++||||++. |.++- ...+..|+.++++.|. .|++++.-|-..+
T Consensus 587 i~k~F~DA--YkS~lsiivvDdiE-rLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~ 652 (744)
T KOG0741|consen 587 IKKIFEDA--YKSPLSIIVVDDIE-RLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRRE 652 (744)
T ss_pred HHHHHHHh--hcCcceEEEEcchh-hhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHH
Confidence 11112221 12267899999997 76653 2334445555555443 4777777774433
No 389
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=88.47 E-value=0.65 Score=54.79 Aligned_cols=119 Identities=14% Similarity=0.202 Sum_probs=62.6
Q ss_pred cEEEEecCCCCCCcCChhhhhhh----cCCc-cccccCCceehhhhHHHHHhhccccccCcccceeccccccccccceEE
Q 001729 43 RVTLIVGETGCGKSSQVPQFLLA----ENME-PILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIV 117 (1020)
Q Consensus 43 ~~vII~apTGSGKTt~ip~~lle----~~~~-~IivtqPrrlaa~sva~rva~e~~~~lg~~Vgy~i~~~~~~~~~t~Ii 117 (1020)
.+++++|++|+||||.+..+... .+.+ .++-+-++|.+|....++++...+.++-. ... .
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~-----~~~----~------ 164 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFA-----LGK----G------ 164 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEe-----cCC----C------
Confidence 47889999999999887666543 2333 34455567776665555555544432110 000 0
Q ss_pred eeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhh-ccCCeEEEEeeccc
Q 001729 118 FKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLL-KKNDLRVVLMSATA 179 (1020)
Q Consensus 118 v~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~-~~~~lkiIlmSATl 179 (1020)
..|..+....... ....++++||||=+- |....+-++..++.+.. ..++--+++++||.
T Consensus 165 -~~P~~i~~~al~~-~~~~~~DvVIIDTaG-r~~~d~~l~~eL~~i~~~~~p~e~lLVvda~t 224 (428)
T TIGR00959 165 -QSPVEIARRALEY-AKENGFDVVIVDTAG-RLQIDEELMEELAAIKEILNPDEILLVVDAMT 224 (428)
T ss_pred -CCHHHHHHHHHHH-HHhcCCCEEEEeCCC-ccccCHHHHHHHHHHHHhhCCceEEEEEeccc
Confidence 0121222211111 011268999999998 54433334444433332 23555577777774
No 390
>PTZ00293 thymidine kinase; Provisional
Probab=88.37 E-value=0.23 Score=52.72 Aligned_cols=36 Identities=11% Similarity=0.234 Sum_probs=25.4
Q ss_pred hccEEEEecCCCCCCcCChhhhhhhc--CCccccccCC
Q 001729 41 ENRVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQP 76 (1020)
Q Consensus 41 ~~~~vII~apTGSGKTt~ip~~lle~--~~~~IivtqP 76 (1020)
.|+..++.||-+||||+.+.+.+... ...+++++-|
T Consensus 3 ~G~i~vi~GpMfSGKTteLLr~i~~y~~ag~kv~~~kp 40 (211)
T PTZ00293 3 RGTISVIIGPMFSGKTTELMRLVKRFTYSEKKCVVIKY 40 (211)
T ss_pred ceEEEEEECCCCChHHHHHHHHHHHHHHcCCceEEEEe
Confidence 46778999999999999887766532 2235555555
No 391
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=88.37 E-value=0.76 Score=57.83 Aligned_cols=20 Identities=20% Similarity=0.393 Sum_probs=16.1
Q ss_pred cEEEEecCCCCCCcCChhhh
Q 001729 43 RVTLIVGETGCGKSSQVPQF 62 (1020)
Q Consensus 43 ~~vII~apTGSGKTt~ip~~ 62 (1020)
..+++.||+|+||||.+-.+
T Consensus 53 ~slLL~GPpGtGKTTLA~aI 72 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARII 72 (725)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 47899999999999755433
No 392
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=88.36 E-value=0.26 Score=56.87 Aligned_cols=29 Identities=28% Similarity=0.637 Sum_probs=22.0
Q ss_pred HHHHHh-hccEEEEecCCCCCCcCChhhhh
Q 001729 35 IVEKVL-ENRVTLIVGETGCGKSSQVPQFL 63 (1020)
Q Consensus 35 il~~i~-~~~~vII~apTGSGKTt~ip~~l 63 (1020)
+.+.+. .+..++|+|||||||||.+-.++
T Consensus 126 ~~~~~~~~~glilI~GpTGSGKTTtL~aLl 155 (358)
T TIGR02524 126 IIDAIAPQEGIVFITGATGSGKSTLLAAII 155 (358)
T ss_pred HHHHHhccCCEEEEECCCCCCHHHHHHHHH
Confidence 455554 66899999999999998764443
No 393
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=88.34 E-value=0.29 Score=54.09 Aligned_cols=39 Identities=28% Similarity=0.434 Sum_probs=27.7
Q ss_pred CcchhhhHHHHHHHHh--hccEEEEecCCCCCCcCChhhhh
Q 001729 25 SLPVMSLREKIVEKVL--ENRVTLIVGETGCGKSSQVPQFL 63 (1020)
Q Consensus 25 ~LPi~~~Q~eil~~i~--~~~~vII~apTGSGKTt~ip~~l 63 (1020)
+|-..+.|.+.+..+. .+..++|+|+|||||||.+-.++
T Consensus 61 ~lg~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all 101 (264)
T cd01129 61 KLGLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSAL 101 (264)
T ss_pred HcCCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHH
Confidence 3555566666666554 34679999999999998775544
No 394
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=88.34 E-value=1.9 Score=48.47 Aligned_cols=123 Identities=20% Similarity=0.244 Sum_probs=66.4
Q ss_pred hccEEEEecCCCCCCcCChhhhhhh--cCCcc-ccc-----cCCceehhhhHHHHHhhccccccCcccceeccccccccc
Q 001729 41 ENRVTLIVGETGCGKSSQVPQFLLA--ENMEP-ILC-----TQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSE 112 (1020)
Q Consensus 41 ~~~~vII~apTGSGKTt~ip~~lle--~~~~~-Iiv-----tqPrrlaa~sva~rva~e~~~~lg~~Vgy~i~~~~~~~~ 112 (1020)
+.+.++++||-|||||+.+--.+.+ ....+ ++| ++.-++|...++..++.++... +..+|
T Consensus 48 EsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~-~k~~g----------- 115 (408)
T KOG2228|consen 48 ESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLALELNRI-VKSFG----------- 115 (408)
T ss_pred CCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhh-heeec-----------
Confidence 4578999999999999877666655 22222 111 2334556666666666655422 11111
Q ss_pred cceEEeeech---hhhHHHHHhccccceeEEEEeeccccc--ccccceeehhhhhHhhccCCeEEEEeecccch
Q 001729 113 RSKIVFKTAG---VLLDEMRDRGLNALKYKVIILDEVHER--SVESDLVLVCVKQLLLKKNDLRVVLMSATADI 181 (1020)
Q Consensus 113 ~t~Iiv~Tpg---~Ll~~l~~~~l~l~~~s~IIIDEaHER--~l~~d~ll~~lk~ll~~~~~lkiIlmSATld~ 181 (1020)
.+.+ .|+..+..+.-.-..--++|+||+|-- ..+.-.+..++......+..+-||++|.-+|.
T Consensus 116 ------sfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~ 183 (408)
T KOG2228|consen 116 ------SFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDI 183 (408)
T ss_pred ------ccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccH
Confidence 1222 344444443221113345678888721 11112333444555556777888998888763
No 395
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=88.18 E-value=1.1 Score=51.44 Aligned_cols=19 Identities=32% Similarity=0.417 Sum_probs=15.1
Q ss_pred cEEEEecCCCCCCcCChhh
Q 001729 43 RVTLIVGETGCGKSSQVPQ 61 (1020)
Q Consensus 43 ~~vII~apTGSGKTt~ip~ 61 (1020)
+..++.||.|+|||+.+-.
T Consensus 37 ~~~Ll~G~~G~GKt~~a~~ 55 (355)
T TIGR02397 37 HAYLFSGPRGTGKTSIARI 55 (355)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3679999999999975533
No 396
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=87.71 E-value=0.35 Score=60.62 Aligned_cols=61 Identities=18% Similarity=0.138 Sum_probs=40.2
Q ss_pred ccCcchhhhHHHHHHHHh----hccEEEEecCCCCCCcCChhhhhhhcC---CccccccCCceehhhh
Q 001729 23 FSSLPVMSLREKIVEKVL----ENRVTLIVGETGCGKSSQVPQFLLAEN---MEPILCTQPRRFAVVA 83 (1020)
Q Consensus 23 r~~LPi~~~Q~eil~~i~----~~~~vII~apTGSGKTt~ip~~lle~~---~~~IivtqPrrlaa~s 83 (1020)
......++.|.+.+..+. +++.++|.||||+|||..+..+.+... ..++++..++..+-.|
T Consensus 11 ~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~~~viist~t~~lq~q 78 (654)
T COG1199 11 FPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREEGKKVIISTRTKALQEQ 78 (654)
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHcCCcEEEECCCHHHHHH
Confidence 344566778888876654 556799999999999977666655433 1355555555544333
No 397
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=87.69 E-value=0.31 Score=61.75 Aligned_cols=116 Identities=14% Similarity=0.092 Sum_probs=61.9
Q ss_pred hhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhc---CCccccccCCceehhhhHHHHHhhccccccCcccceeccc
Q 001729 30 SLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE---NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGH 106 (1020)
Q Consensus 30 ~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~---~~~~IivtqPrrlaa~sva~rva~e~~~~lg~~Vgy~i~~ 106 (1020)
+|--+++-.+.=++--|..+.||=|||....++++-+ |.+.-+||.- .-+|.-=+++++..+ ..+|-+||.....
T Consensus 139 ~ydVQLiGgivLh~G~IAEM~TGEGKTLvatlp~yLnAL~G~gVHvVTvN-DYLA~RDaewm~p~y-~flGLtVg~i~~~ 216 (1025)
T PRK12900 139 PYDVQLIGGIVLHSGKISEMATGEGKTLVSTLPTFLNALTGRGVHVVTVN-DYLAQRDKEWMNPVF-EFHGLSVGVILNT 216 (1025)
T ss_pred ccchHHhhhHHhhcCCccccCCCCCcchHhHHHHHHHHHcCCCcEEEeec-hHhhhhhHHHHHHHH-HHhCCeeeeeCCC
Confidence 3444466666656666899999999996554443322 2233444433 233333333332211 1345556643221
Q ss_pred ----cccccccceEEeeechhh-----hHHHHHh--ccccceeEEEEeeccc
Q 001729 107 ----SKHLSERSKIVFKTAGVL-----LDEMRDR--GLNALKYKVIILDEVH 147 (1020)
Q Consensus 107 ----~~~~~~~t~Iiv~Tpg~L-----l~~l~~~--~l~l~~~s~IIIDEaH 147 (1020)
+.+..-.++|+|+|..-| .+.|... ..-...+.+.|||||+
T Consensus 217 ~~~~~Rr~aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvD 268 (1025)
T PRK12900 217 MRPEERREQYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVD 268 (1025)
T ss_pred CCHHHHHHhCCCcceecCCCccccccchhccccchhhhhccCCceEEEechh
Confidence 112233689999997443 3333211 1112378899999999
No 398
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=87.67 E-value=0.16 Score=67.93 Aligned_cols=129 Identities=10% Similarity=0.069 Sum_probs=75.6
Q ss_pred hhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhhhc---C--CccccccCCceehhhhHHHHHhhccccccCccccee
Q 001729 29 MSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE---N--MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYH 103 (1020)
Q Consensus 29 ~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~---~--~~~IivtqPrrlaa~sva~rva~e~~~~lg~~Vgy~ 103 (1020)
++-|.+++. ..+++++|.|.-|||||+.+..-++.. + ..+|+++.-++.+|..+..|+...+...+...-...
T Consensus 3 t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~~~p~~~ 80 (1232)
T TIGR02785 3 TDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEALQKALQQEPNSK 80 (1232)
T ss_pred CHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHHHHHHhcCchhH
Confidence 567888887 467899999999999997765544332 2 236888888899999888888776543222111100
Q ss_pred ccccccccccceEEeeechhhhHHHHHhc-cccc-eeEEEEeecccccccccceeehhh
Q 001729 104 IGHSKHLSERSKIVFKTAGVLLDEMRDRG-LNAL-KYKVIILDEVHERSVESDLVLVCV 160 (1020)
Q Consensus 104 i~~~~~~~~~t~Iiv~Tpg~Ll~~l~~~~-l~l~-~~s~IIIDEaHER~l~~d~ll~~l 160 (1020)
........-...-|+|-..+...+.... ..+. +.+.=|.||.....+..+.+..++
T Consensus 81 -~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~~ll~~e~~~~~~ 138 (1232)
T TIGR02785 81 -HLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQLLLIKEVVDDVF 138 (1232)
T ss_pred -HHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHHHHHHHHHHHHHH
Confidence 1111222234556788766655444322 1111 445556888874334333333333
No 399
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.48 E-value=0.38 Score=51.91 Aligned_cols=26 Identities=31% Similarity=0.566 Sum_probs=21.1
Q ss_pred HhhccEEEEecCCCCCCcCChhhhhh
Q 001729 39 VLENRVTLIVGETGCGKSSQVPQFLL 64 (1020)
Q Consensus 39 i~~~~~vII~apTGSGKTt~ip~~ll 64 (1020)
+.+..-||++|+|||||||.+..++-
T Consensus 124 ~~kRGLviiVGaTGSGKSTtmAaMi~ 149 (375)
T COG5008 124 LAKRGLVIIVGATGSGKSTTMAAMIG 149 (375)
T ss_pred cccCceEEEECCCCCCchhhHHHHhc
Confidence 34667899999999999988776654
No 400
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=87.45 E-value=0.35 Score=54.43 Aligned_cols=48 Identities=19% Similarity=0.219 Sum_probs=30.4
Q ss_pred hhHHHHHHHHhhc-cEEEEecCCCCCCcCChhhhhhhcC-CccccccCCc
Q 001729 30 SLREKIVEKVLEN-RVTLIVGETGCGKSSQVPQFLLAEN-MEPILCTQPR 77 (1020)
Q Consensus 30 ~~Q~eil~~i~~~-~~vII~apTGSGKTt~ip~~lle~~-~~~IivtqPr 77 (1020)
+-+.+++..+... .+++|+|.|||||||.+-.++..-. ..+|++..-+
T Consensus 160 ~~~a~~L~~av~~r~NILisGGTGSGKTTlLNal~~~i~~~eRvItiEDt 209 (355)
T COG4962 160 RRAAKFLRRAVGIRCNILISGGTGSGKTTLLNALSGFIDSDERVITIEDT 209 (355)
T ss_pred HHHHHHHHHHHhhceeEEEeCCCCCCHHHHHHHHHhcCCCcccEEEEeeh
Confidence 3466666665544 5999999999999986544433221 1256665443
No 401
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=87.42 E-value=0.18 Score=57.22 Aligned_cols=37 Identities=22% Similarity=0.316 Sum_probs=31.3
Q ss_pred hhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhhhh
Q 001729 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLL 64 (1020)
Q Consensus 28 i~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~ll 64 (1020)
.+.+|.++|+.|+.+.+|+..|+||||||-++-.+++
T Consensus 25 ptdvqaeaiplilgggdvlmaaetgsgktgaf~lpil 61 (725)
T KOG0349|consen 25 PTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIL 61 (725)
T ss_pred ccccccccccEEecCCcEEEEeccCCCCccceehhhH
Confidence 3678999999999999999999999999965544443
No 402
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=87.41 E-value=1.1 Score=50.99 Aligned_cols=40 Identities=20% Similarity=0.173 Sum_probs=27.1
Q ss_pred eeEEEEeecccccccccceeehhhhhHhhccCCeEEEEeecc
Q 001729 137 KYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (1020)
Q Consensus 137 ~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmSAT 178 (1020)
.++++||||||. ++..-...++|.+-.-.++..+|+.|.-
T Consensus 113 ~~kV~iI~~ae~--m~~~AaNaLLKtLEEPp~~~~fiL~~~~ 152 (319)
T PRK08769 113 IAQVVIVDPADA--INRAACNALLKTLEEPSPGRYLWLISAQ 152 (319)
T ss_pred CcEEEEeccHhh--hCHHHHHHHHHHhhCCCCCCeEEEEECC
Confidence 789999999993 3444556677765544456666766654
No 403
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=87.17 E-value=0.87 Score=48.75 Aligned_cols=25 Identities=36% Similarity=0.527 Sum_probs=21.2
Q ss_pred hccEEEEecCCCCCCcCChhhhhhh
Q 001729 41 ENRVTLIVGETGCGKSSQVPQFLLA 65 (1020)
Q Consensus 41 ~~~~vII~apTGSGKTt~ip~~lle 65 (1020)
.++.+.|.|++|+|||+...+++..
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~ 42 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVE 42 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHH
Confidence 4689999999999999877777654
No 404
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=87.13 E-value=0.44 Score=54.78 Aligned_cols=17 Identities=41% Similarity=0.688 Sum_probs=14.7
Q ss_pred hccEEEEecCCCCCCcC
Q 001729 41 ENRVTLIVGETGCGKSS 57 (1020)
Q Consensus 41 ~~~~vII~apTGSGKTt 57 (1020)
+..|+|+.||||||||.
T Consensus 225 eKSNvLllGPtGsGKTl 241 (564)
T KOG0745|consen 225 EKSNVLLLGPTGSGKTL 241 (564)
T ss_pred ecccEEEECCCCCchhH
Confidence 34689999999999994
No 405
>PRK05973 replicative DNA helicase; Provisional
Probab=86.99 E-value=0.52 Score=51.16 Aligned_cols=56 Identities=11% Similarity=0.127 Sum_probs=36.1
Q ss_pred HHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcCC--ccccccCCceehhhhHHHHHh
Q 001729 33 EKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM--EPILCTQPRRFAVVAVAKMVA 89 (1020)
Q Consensus 33 ~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~~--~~IivtqPrrlaa~sva~rva 89 (1020)
+++..-+..+..++|.|++|+|||+...+++.+... .++++. ..+....++.++..
T Consensus 55 ~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyf-SlEes~~~i~~R~~ 112 (237)
T PRK05973 55 EELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFF-TLEYTEQDVRDRLR 112 (237)
T ss_pred HHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEE-EEeCCHHHHHHHHH
Confidence 344455667789999999999999988888765421 233333 22333455665553
No 406
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=86.95 E-value=1.5 Score=53.64 Aligned_cols=138 Identities=20% Similarity=0.227 Sum_probs=80.8
Q ss_pred ccEEEEecCCCCCCcCChh-hhhhhc---CCccccccCCceehhhhHHHHHhhcccccc-Cccccee----c--cccccc
Q 001729 42 NRVTLIVGETGCGKSSQVP-QFLLAE---NMEPILCTQPRRFAVVAVAKMVAKGRNCEL-GGEVGYH----I--GHSKHL 110 (1020)
Q Consensus 42 ~~~vII~apTGSGKTt~ip-~~lle~---~~~~IivtqPrrlaa~sva~rva~e~~~~l-g~~Vgy~----i--~~~~~~ 110 (1020)
.+-.++..|==.|||..+. .+.+.. ...+|+++.|++-.+..+.+++...+.... +..+... + .+.+
T Consensus 254 qk~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe~I~i~f~n-- 331 (738)
T PHA03368 254 QRATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGETISFSFPD-- 331 (738)
T ss_pred ccceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCcEEEEEecC--
Confidence 4678899999999997544 222111 234899999999998888887766332111 1111110 0 1111
Q ss_pred cccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhccCCeEEEEeecccchhhhhHHHhh
Q 001729 111 SERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADITKYRDYFRD 190 (1020)
Q Consensus 111 ~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmSATld~~~~~~~f~~ 190 (1020)
.....|.|.+.. ......-..++++|||||++ +..+.+..++--+. ..+.++|.+|.|-..+.-..|+.+
T Consensus 332 G~kstI~FaSar------ntNsiRGqtfDLLIVDEAqF--Ik~~al~~ilp~l~--~~n~k~I~ISS~Ns~~~sTSFL~n 401 (738)
T PHA03368 332 GSRSTIVFASSH------NTNGIRGQDFNLLFVDEANF--IRPDAVQTIMGFLN--QTNCKIIFVSSTNTGKASTSFLYN 401 (738)
T ss_pred CCccEEEEEecc------CCCCccCCcccEEEEechhh--CCHHHHHHHHHHHh--ccCccEEEEecCCCCccchHHHHh
Confidence 111355554320 01112223799999999995 44455555553322 238899999999877777777766
Q ss_pred c
Q 001729 191 L 191 (1020)
Q Consensus 191 ~ 191 (1020)
+
T Consensus 402 L 402 (738)
T PHA03368 402 L 402 (738)
T ss_pred h
Confidence 5
No 407
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=86.92 E-value=0.46 Score=54.25 Aligned_cols=32 Identities=25% Similarity=0.370 Sum_probs=22.6
Q ss_pred ccchhhHHH-HHHHHhhhhhcCCCCccCccccchh
Q 001729 450 PEVVGDALD-LLDHKRALQKISPRGRYEPTFYGRL 483 (1020)
Q Consensus 450 ~~~i~~al~-~L~~lgald~~~~~g~~~lT~lG~~ 483 (1020)
...+.+.++ .|.+.|.|.. ++.|+ .+|+.|..
T Consensus 290 ~~~~~~~~e~~Li~~~li~~-~~~gr-~~~~~~~~ 322 (328)
T PRK00080 290 RDTIEDVYEPYLIQQGFIQR-TPRGR-VATPKAYE 322 (328)
T ss_pred cchHHHHhhHHHHHcCCccc-CCchH-HHHHHHHH
Confidence 446777777 9999999976 55565 47777653
No 408
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=86.91 E-value=0.56 Score=55.17 Aligned_cols=18 Identities=33% Similarity=0.551 Sum_probs=15.2
Q ss_pred cEEEEecCCCCCCcCChh
Q 001729 43 RVTLIVGETGCGKSSQVP 60 (1020)
Q Consensus 43 ~~vII~apTGSGKTt~ip 60 (1020)
.++++.||||+|||+.+-
T Consensus 109 ~~iLl~Gp~GtGKT~lAr 126 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQ 126 (412)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 579999999999997543
No 409
>PHA03311 helicase-primase subunit BBLF4; Provisional
Probab=86.89 E-value=0.47 Score=58.07 Aligned_cols=44 Identities=27% Similarity=0.356 Sum_probs=35.2
Q ss_pred cEEEEecCCCCCCcCChhhhhhhcCCccccccCCceehhhhHHHHHh
Q 001729 43 RVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVA 89 (1020)
Q Consensus 43 ~~vII~apTGSGKTt~ip~~lle~~~~~IivtqPrrlaa~sva~rva 89 (1020)
..++|.|--|+||||.+- .+.+.. ..+++.|+++||+.+...+.
T Consensus 72 s~~~itG~AGsGKst~i~-~l~~~l--~cvitg~T~vAAqN~~~~L~ 115 (828)
T PHA03311 72 SVYLITGTAGAGKSTSIQ-TLNENL--DCVITGATRVAAQNLSAKLS 115 (828)
T ss_pred EEEEEecCCCCChHHHHH-HHHHhc--CEEEEcchHHHHHhhhcccc
Confidence 688999999999998664 444433 67899999999999877554
No 410
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=86.89 E-value=0.55 Score=56.57 Aligned_cols=143 Identities=18% Similarity=0.222 Sum_probs=73.4
Q ss_pred hhHHHHHHHHhh---------ccEEEEecCCCCCCcCChhhhhh-----hc-CCccccccCCceehhhhHHHHHhhcccc
Q 001729 30 SLREKIVEKVLE---------NRVTLIVGETGCGKSSQVPQFLL-----AE-NMEPILCTQPRRFAVVAVAKMVAKGRNC 94 (1020)
Q Consensus 30 ~~Q~eil~~i~~---------~~~vII~apTGSGKTt~ip~~ll-----e~-~~~~IivtqPrrlaa~sva~rva~e~~~ 94 (1020)
|.|.-++..+.. -+.+++.-+=|-|||+.+....+ +. ....|+++.+++-.|..+.+.+......
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 457777777652 14677888999999965444322 11 1246899999988888777665543221
Q ss_pred --ccCcccceeccccccccccceEEeeechhhhHHHHHh--ccccceeEEEEeecccccccccceeehhhhhHhhccCCe
Q 001729 95 --ELGGEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDR--GLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDL 170 (1020)
Q Consensus 95 --~lg~~Vgy~i~~~~~~~~~t~Iiv~Tpg~Ll~~l~~~--~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~l 170 (1020)
.+....+..+ .......|.+-..+.+++.+..+ ...-.+.+++|+||+|+.. .+-+...++.-...+++.
T Consensus 81 ~~~l~~~~~~~~----~~~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~--~~~~~~~l~~g~~~r~~p 154 (477)
T PF03354_consen 81 SPELRKRKKPKI----IKSNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHK--DDELYDALESGMGARPNP 154 (477)
T ss_pred Chhhccchhhhh----hhhhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCC--CHHHHHHHHhhhccCCCc
Confidence 1111111110 00112233333223332222211 1122278999999999532 222444455545555555
Q ss_pred EEEE-eecc
Q 001729 171 RVVL-MSAT 178 (1020)
Q Consensus 171 kiIl-mSAT 178 (1020)
.++. .||.
T Consensus 155 l~~~ISTag 163 (477)
T PF03354_consen 155 LIIIISTAG 163 (477)
T ss_pred eEEEEeCCC
Confidence 5444 4444
No 411
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=86.79 E-value=0.78 Score=56.19 Aligned_cols=21 Identities=29% Similarity=0.514 Sum_probs=16.4
Q ss_pred cEEEEecCCCCCCcCChhhhh
Q 001729 43 RVTLIVGETGCGKSSQVPQFL 63 (1020)
Q Consensus 43 ~~vII~apTGSGKTt~ip~~l 63 (1020)
+..++.||.|+|||+.+-.+.
T Consensus 39 hayLf~Gp~G~GKTt~Ar~lA 59 (563)
T PRK06647 39 NAYIFSGPRGVGKTSSARAFA 59 (563)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 347999999999998665544
No 412
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=86.68 E-value=0.95 Score=51.11 Aligned_cols=39 Identities=28% Similarity=0.426 Sum_probs=25.9
Q ss_pred ceeEEEEeecccccccccceeehhhhhHhhccCCeEEEEee
Q 001729 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (1020)
Q Consensus 136 ~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmS 176 (1020)
..+.+||||||+. +..|....++|.+.....+..+|+.+
T Consensus 108 ~~~kviiidead~--mt~~A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 108 GGYKVVIIDEADK--LTEDAANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred CCceEEEeCcHHH--HhHHHHHHHHHHhccCCCCeEEEEEc
Confidence 3789999999993 44455556666655555556666555
No 413
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=86.60 E-value=0.59 Score=55.98 Aligned_cols=41 Identities=29% Similarity=0.417 Sum_probs=27.6
Q ss_pred ceeEEEEeecccccccccceeehhhhhHhhccCCeEEEEeecccc
Q 001729 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATAD 180 (1020)
Q Consensus 136 ~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmSATld 180 (1020)
.+|.+.||||+| ++......++||.+-.-.+.+. +.=||-+
T Consensus 118 ~ryKVyiIDEvH--MLS~~afNALLKTLEEPP~hV~--FIlATTe 158 (515)
T COG2812 118 GRYKVYIIDEVH--MLSKQAFNALLKTLEEPPSHVK--FILATTE 158 (515)
T ss_pred ccceEEEEecHH--hhhHHHHHHHhcccccCccCeE--EEEecCC
Confidence 389999999999 5566666777777654444444 4445533
No 414
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=86.50 E-value=1.4 Score=50.45 Aligned_cols=41 Identities=17% Similarity=0.097 Sum_probs=26.5
Q ss_pred ceeEEEEeecccccccccceeehhhhhHhhccCCeEEEEeecc
Q 001729 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (1020)
Q Consensus 136 ~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmSAT 178 (1020)
..++++|||+||. ++..-...++|.+-.-.++..+|+.|.-
T Consensus 131 ~~~kV~iI~~ae~--m~~~AaNaLLKtLEEPp~~t~fiL~t~~ 171 (342)
T PRK06964 131 GGARVVVLYPAEA--LNVAAANALLKTLEEPPPGTVFLLVSAR 171 (342)
T ss_pred CCceEEEEechhh--cCHHHHHHHHHHhcCCCcCcEEEEEECC
Confidence 3799999999994 3334455667776544455555555544
No 415
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=86.03 E-value=0.58 Score=55.42 Aligned_cols=46 Identities=28% Similarity=0.454 Sum_probs=32.2
Q ss_pred cCcchhhhHHHHHHHHhh----------ccEEEEecCCCCCCcCChhhhhhhcCCc
Q 001729 24 SSLPVMSLREKIVEKVLE----------NRVTLIVGETGCGKSSQVPQFLLAENME 69 (1020)
Q Consensus 24 ~~LPi~~~Q~eil~~i~~----------~~~vII~apTGSGKTt~ip~~lle~~~~ 69 (1020)
.+|.|.+.+-.-++.++. ++.++|+||+||||||.+-.+.-+.+..
T Consensus 82 eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~ 137 (634)
T KOG1970|consen 82 EELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQ 137 (634)
T ss_pred HHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhCce
Confidence 446666655555554443 5799999999999999887666665543
No 416
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=85.96 E-value=0.54 Score=53.78 Aligned_cols=25 Identities=28% Similarity=0.195 Sum_probs=18.1
Q ss_pred cEEEEecCCCCCCcCChhhhhhhcC
Q 001729 43 RVTLIVGETGCGKSSQVPQFLLAEN 67 (1020)
Q Consensus 43 ~~vII~apTGSGKTt~ip~~lle~~ 67 (1020)
..++|.||.|||||.+.-...-+.+
T Consensus 149 lgllL~GPPGcGKTllAraiA~elg 173 (413)
T PLN00020 149 LILGIWGGKGQGKSFQCELVFKKMG 173 (413)
T ss_pred eEEEeeCCCCCCHHHHHHHHHHHcC
Confidence 4678999999999976554444433
No 417
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=85.80 E-value=0.92 Score=46.81 Aligned_cols=24 Identities=21% Similarity=0.451 Sum_probs=19.3
Q ss_pred HhhccEEEEecCCCCCCcCChhhh
Q 001729 39 VLENRVTLIVGETGCGKSSQVPQF 62 (1020)
Q Consensus 39 i~~~~~vII~apTGSGKTt~ip~~ 62 (1020)
+..++.+.|.|+.||||||.+-.+
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l 48 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLL 48 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH
Confidence 347899999999999999855433
No 418
>PRK10865 protein disaggregation chaperone; Provisional
Probab=85.74 E-value=1 Score=57.98 Aligned_cols=132 Identities=25% Similarity=0.347 Sum_probs=0.0
Q ss_pred HHHHHHHhhcc-----------EEEEecCCCCCCcCChhhhhhhcCCccccccCCceehhhhHHHHHhhccccccCcccc
Q 001729 33 EKIVEKVLENR-----------VTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (1020)
Q Consensus 33 ~eil~~i~~~~-----------~vII~apTGSGKTt~ip~~lle~~~~~IivtqPrrlaa~sva~rva~e~~~~lg~~Vg 101 (1020)
..+..++...+ .++++||||+|||+.+ ..+.+...+.---..........-...++...|.+.| .+|
T Consensus 578 ~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA-~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pg-y~g 655 (857)
T PRK10865 578 EAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELC-KALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPG-YVG 655 (857)
T ss_pred HHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHH-HHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCc-ccc
Q ss_pred eeccccccccccceEEeeechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhcc--------CCeE--
Q 001729 102 YHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKK--------NDLR-- 171 (1020)
Q Consensus 102 y~i~~~~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~--------~~lk-- 171 (1020)
|. --|.|...+... .+++|+|||++ ....+....++..+-..+ -+.+
T Consensus 656 ~~----------------~~g~l~~~v~~~-----p~~vLllDEie--ka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~ 712 (857)
T PRK10865 656 YE----------------EGGYLTEAVRRR-----PYSVILLDEVE--KAHPDVFNILLQVLDDGRLTDGQGRTVDFRNT 712 (857)
T ss_pred cc----------------hhHHHHHHHHhC-----CCCeEEEeehh--hCCHHHHHHHHHHHhhCceecCCceEEeeccc
Q ss_pred EEEeecccchhhhhHHHh
Q 001729 172 VVLMSATADITKYRDYFR 189 (1020)
Q Consensus 172 iIlmSATld~~~~~~~f~ 189 (1020)
+|+||..+..+.+.+.|+
T Consensus 713 iiI~TSN~g~~~~~~~~~ 730 (857)
T PRK10865 713 VVIMTSNLGSDLIQERFG 730 (857)
T ss_pred EEEEeCCcchHHHHHhcc
No 419
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=85.68 E-value=0.97 Score=54.42 Aligned_cols=17 Identities=35% Similarity=0.722 Sum_probs=14.6
Q ss_pred cEEEEecCCCCCCcCCh
Q 001729 43 RVTLIVGETGCGKSSQV 59 (1020)
Q Consensus 43 ~~vII~apTGSGKTt~i 59 (1020)
+.+++.||+|+|||+.+
T Consensus 217 ~GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 217 KGVLLYGPPGCGKTLIA 233 (512)
T ss_pred cceEEECCCCCcHHHHH
Confidence 57999999999999743
No 420
>CHL00176 ftsH cell division protein; Validated
Probab=85.61 E-value=1.1 Score=55.68 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=16.4
Q ss_pred cEEEEecCCCCCCcCChhhhh
Q 001729 43 RVTLIVGETGCGKSSQVPQFL 63 (1020)
Q Consensus 43 ~~vII~apTGSGKTt~ip~~l 63 (1020)
+.+++.||+|+|||+.+-...
T Consensus 217 ~gVLL~GPpGTGKT~LAralA 237 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAKAIA 237 (638)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 369999999999997554443
No 421
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=85.60 E-value=0.55 Score=57.70 Aligned_cols=40 Identities=20% Similarity=0.319 Sum_probs=28.3
Q ss_pred cCcchhhhHHHHHHHHh--hccEEEEecCCCCCCcCChhhhh
Q 001729 24 SSLPVMSLREKIVEKVL--ENRVTLIVGETGCGKSSQVPQFL 63 (1020)
Q Consensus 24 ~~LPi~~~Q~eil~~i~--~~~~vII~apTGSGKTt~ip~~l 63 (1020)
..|-+.+.+.+.+..+. .+..++|+|||||||||.+...+
T Consensus 296 ~~lg~~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl~a~l 337 (564)
T TIGR02538 296 DKLGFEPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSLYTAL 337 (564)
T ss_pred HHcCCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHH
Confidence 45666666666666553 35688999999999998764443
No 422
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=85.59 E-value=0.88 Score=49.04 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=21.7
Q ss_pred hhccEEEEecCCCCCCcCChhhhhhh
Q 001729 40 LENRVTLIVGETGCGKSSQVPQFLLA 65 (1020)
Q Consensus 40 ~~~~~vII~apTGSGKTt~ip~~lle 65 (1020)
..+..+.|.|++|||||+...+++..
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~ 42 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999999888777654
No 423
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=85.58 E-value=0.93 Score=57.97 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=16.5
Q ss_pred ccEEEEecCCCCCCcCChhhh
Q 001729 42 NRVTLIVGETGCGKSSQVPQF 62 (1020)
Q Consensus 42 ~~~vII~apTGSGKTt~ip~~ 62 (1020)
+..+++.||+|+|||+.+-.+
T Consensus 347 ~~~lll~GppG~GKT~lAk~i 367 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGKSI 367 (775)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 457999999999999755433
No 424
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=85.40 E-value=0.25 Score=59.57 Aligned_cols=133 Identities=15% Similarity=0.170 Sum_probs=0.0
Q ss_pred CCCCCCCcccCcchhhhHHHHHHHHh-----hccEEEEecCCCCCCcCChhhhhhhcCCc------------cccccCCc
Q 001729 15 SSPFTSPEFSSLPVMSLREKIVEKVL-----ENRVTLIVGETGCGKSSQVPQFLLAENME------------PILCTQPR 77 (1020)
Q Consensus 15 ~~~~~~~~r~~LPi~~~Q~eil~~i~-----~~~~vII~apTGSGKTt~ip~~lle~~~~------------~IivtqPr 77 (1020)
+.-.+.+.-..+++.++|...+..+. .++--|+...-|-|||..++..++..... .-+|+.|-
T Consensus 313 t~lte~P~g~~v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~Pa 392 (901)
T KOG4439|consen 313 TDLTETPDGLKVELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPA 392 (901)
T ss_pred ccccCCCCcceeecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcH
Q ss_pred eehhhhHHHHHhhccccccCcccceeccccccc---cccceEEeeechhhhH-------HHHHhccccc-eeEEEEeecc
Q 001729 78 RFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHL---SERSKIVFKTAGVLLD-------EMRDRGLNAL-KYKVIILDEV 146 (1020)
Q Consensus 78 rlaa~sva~rva~e~~~~lg~~Vgy~i~~~~~~---~~~t~Iiv~Tpg~Ll~-------~l~~~~l~l~-~~s~IIIDEa 146 (1020)
++..+.-++.-.+.-...+...+-+.....+.. -...+|+++|+..+.+ .-.+....+. .++.||+|||
T Consensus 393 Sli~qW~~Ev~~rl~~n~LsV~~~HG~n~r~i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEA 472 (901)
T KOG4439|consen 393 SLIHQWEAEVARRLEQNALSVYLYHGPNKREISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEA 472 (901)
T ss_pred HHHHHHHHHHHHHHhhcceEEEEecCCccccCCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhh
Q ss_pred c
Q 001729 147 H 147 (1020)
Q Consensus 147 H 147 (1020)
|
T Consensus 473 H 473 (901)
T KOG4439|consen 473 H 473 (901)
T ss_pred h
No 425
>PRK11054 helD DNA helicase IV; Provisional
Probab=85.33 E-value=0.53 Score=58.93 Aligned_cols=66 Identities=24% Similarity=0.253 Sum_probs=49.3
Q ss_pred CcchhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhh---hhhcC---CccccccCCceehhhhHHHHHhhcc
Q 001729 25 SLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQF---LLAEN---MEPILCTQPRRFAVVAVAKMVAKGR 92 (1020)
Q Consensus 25 ~LPi~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~---lle~~---~~~IivtqPrrlaa~sva~rva~e~ 92 (1020)
.-|+++.|.+++.. ....++|.|..|||||+.+..- ++..+ ...|+++..++-+|..+.+|+....
T Consensus 194 ~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 194 SSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred CCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 36899999988864 3356789999999999655433 34433 2378999999999999999887754
No 426
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=85.17 E-value=1.2 Score=49.41 Aligned_cols=32 Identities=25% Similarity=0.507 Sum_probs=22.5
Q ss_pred HHHHHHHHhhc---cEEEEecCCCCCCcCChhhhh
Q 001729 32 REKIVEKVLEN---RVTLIVGETGCGKSSQVPQFL 63 (1020)
Q Consensus 32 Q~eil~~i~~~---~~vII~apTGSGKTt~ip~~l 63 (1020)
.+.++..+.++ +++++.|||||||||.+-.++
T Consensus 98 ~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~ 132 (270)
T TIGR02858 98 ADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLA 132 (270)
T ss_pred HHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHh
Confidence 34455555443 689999999999998664443
No 427
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.15 E-value=1.7 Score=53.95 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=17.4
Q ss_pred HHHHHhhc---cEEEEecCCCCCCcCC
Q 001729 35 IVEKVLEN---RVTLIVGETGCGKSSQ 58 (1020)
Q Consensus 35 il~~i~~~---~~vII~apTGSGKTt~ 58 (1020)
+...+.++ +..|++||.|+|||+.
T Consensus 29 L~~~i~~~~l~hayLf~Gp~G~GKtt~ 55 (614)
T PRK14971 29 LKNAIATNKLAHAYLFCGPRGVGKTTC 55 (614)
T ss_pred HHHHHHcCCCCeeEEEECCCCCCHHHH
Confidence 34444454 3489999999999983
No 428
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=85.07 E-value=0.89 Score=47.09 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=24.1
Q ss_pred ccEEEEecCCCCCCcCChhhhhhh--cCCccccccCC
Q 001729 42 NRVTLIVGETGCGKSSQVPQFLLA--ENMEPILCTQP 76 (1020)
Q Consensus 42 ~~~vII~apTGSGKTt~ip~~lle--~~~~~IivtqP 76 (1020)
++..++.||-+||||+.+.+.+.. ....++++.-|
T Consensus 1 g~l~~i~GpM~sGKS~eLi~~~~~~~~~~~~v~~~kp 37 (176)
T PF00265_consen 1 GKLEFITGPMFSGKSTELIRRIHRYEIAGKKVLVFKP 37 (176)
T ss_dssp -EEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred CEEEEEECCcCChhHHHHHHHHHHHHhCCCeEEEEEe
Confidence 356789999999999988776643 33345666655
No 429
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=85.06 E-value=0.33 Score=51.18 Aligned_cols=21 Identities=33% Similarity=0.683 Sum_probs=16.9
Q ss_pred cEEEEecCCCCCCcCChhhhh
Q 001729 43 RVTLIVGETGCGKSSQVPQFL 63 (1020)
Q Consensus 43 ~~vII~apTGSGKTt~ip~~l 63 (1020)
..++|+|||||||||.+-.++
T Consensus 2 GlilI~GptGSGKTTll~~ll 22 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMI 22 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 358999999999998775443
No 430
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=85.04 E-value=1 Score=57.08 Aligned_cols=19 Identities=37% Similarity=0.527 Sum_probs=15.3
Q ss_pred EEEEecCCCCCCcCChhhh
Q 001729 44 VTLIVGETGCGKSSQVPQF 62 (1020)
Q Consensus 44 ~vII~apTGSGKTt~ip~~ 62 (1020)
.++++||||+|||+.+-.+
T Consensus 490 ~~Lf~GP~GvGKT~lAk~L 508 (758)
T PRK11034 490 SFLFAGPTGVGKTEVTVQL 508 (758)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 6899999999999755433
No 431
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=84.83 E-value=1 Score=57.36 Aligned_cols=33 Identities=24% Similarity=0.464 Sum_probs=23.6
Q ss_pred hhhhHHHHHHHHh--------hccEEEEecCCCCCCcCChh
Q 001729 28 VMSLREKIVEKVL--------ENRVTLIVGETGCGKSSQVP 60 (1020)
Q Consensus 28 i~~~Q~eil~~i~--------~~~~vII~apTGSGKTt~ip 60 (1020)
+....++|++.+. .+..+++.||+|+|||+.+-
T Consensus 327 ~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~ 367 (784)
T PRK10787 327 LERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQ 367 (784)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHH
Confidence 4456677776543 34689999999999997443
No 432
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=84.76 E-value=0.51 Score=54.72 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=19.1
Q ss_pred HhhccEEEEecCCCCCCcCChhh
Q 001729 39 VLENRVTLIVGETGCGKSSQVPQ 61 (1020)
Q Consensus 39 i~~~~~vII~apTGSGKTt~ip~ 61 (1020)
+-.|+.++|+||+|+||||.+-.
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~~~ 187 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLLQK 187 (415)
T ss_pred eCCCCEEEEECCCCCChhHHHHH
Confidence 34789999999999999985544
No 433
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=84.64 E-value=1 Score=46.08 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=19.2
Q ss_pred HhhccEEEEecCCCCCCcCChhhh
Q 001729 39 VLENRVTLIVGETGCGKSSQVPQF 62 (1020)
Q Consensus 39 i~~~~~vII~apTGSGKTt~ip~~ 62 (1020)
+..++.+.|.||.||||||.+-.+
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i 48 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLL 48 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH
Confidence 347899999999999999855433
No 434
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.46 E-value=0.33 Score=55.07 Aligned_cols=24 Identities=38% Similarity=0.891 Sum_probs=21.4
Q ss_pred CCccceeccCCCCCCCCCccCCCCC
Q 001729 765 PACKFFYSLQGCRNGDSCIFSHDLG 789 (1020)
Q Consensus 765 ~~C~~f~~~g~C~~g~~C~f~H~~~ 789 (1020)
.+|+|| +.|+|++|+.|+|+|.+.
T Consensus 9 tic~~~-~~g~c~~g~~cr~~h~~~ 32 (344)
T KOG1039|consen 9 TICKYY-QKGNCKFGDLCRLSHSLP 32 (344)
T ss_pred hhhhhc-ccccccccceeeeeccCc
Confidence 049999 999999999999999985
No 435
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=84.43 E-value=0.98 Score=52.44 Aligned_cols=35 Identities=29% Similarity=0.327 Sum_probs=25.8
Q ss_pred hccEEEEecCCCCCCcCChhhhhhhcCC--ccccccC
Q 001729 41 ENRVTLIVGETGCGKSSQVPQFLLAENM--EPILCTQ 75 (1020)
Q Consensus 41 ~~~~vII~apTGSGKTt~ip~~lle~~~--~~Iivtq 75 (1020)
.+..++|.|++|+|||+.+.+++.+... .+++++.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3588999999999999988888765322 3555543
No 436
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=84.41 E-value=4.4 Score=45.72 Aligned_cols=131 Identities=17% Similarity=0.239 Sum_probs=74.8
Q ss_pred cEEEEecCCCCCCcCChhhhh---hhcCCccccc-cCCceehhhhHHHHHhhccccccCcccceeccccccccccceEEe
Q 001729 43 RVTLIVGETGCGKSSQVPQFL---LAENMEPILC-TQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVF 118 (1020)
Q Consensus 43 ~~vII~apTGSGKTt~ip~~l---le~~~~~Iiv-tqPrrlaa~sva~rva~e~~~~lg~~Vgy~i~~~~~~~~~t~Iiv 118 (1020)
.+++++|-.|+||||.+..+. .+.+.+.++. .-+=|.+|+..-+.+++..|..+-. .. .-.+.+.
T Consensus 140 ~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~-------~~-~G~DpAa--- 208 (340)
T COG0552 140 FVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVIS-------GK-EGADPAA--- 208 (340)
T ss_pred EEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEc-------cC-CCCCcHH---
Confidence 478899999999999877654 3444443332 2344677776666666655544311 11 0111111
Q ss_pred eechhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhc-cCC------eEEEEeeccc--chhhhhHHHh
Q 001729 119 KTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLK-KND------LRVVLMSATA--DITKYRDYFR 189 (1020)
Q Consensus 119 ~Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~-~~~------lkiIlmSATl--d~~~~~~~f~ 189 (1020)
+..+.++... ..++++|+||=|- |.-+..-|+.-|+++.+. .++ -.++++=||. |+-.-.+.|+
T Consensus 209 ----VafDAi~~Ak--ar~~DvvliDTAG-RLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~ 281 (340)
T COG0552 209 ----VAFDAIQAAK--ARGIDVVLIDTAG-RLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFN 281 (340)
T ss_pred ----HHHHHHHHHH--HcCCCEEEEeCcc-cccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHH
Confidence 2333344332 2389999999999 766665566655555432 222 2556668886 4444455665
Q ss_pred hc
Q 001729 190 DL 191 (1020)
Q Consensus 190 ~~ 191 (1020)
..
T Consensus 282 ea 283 (340)
T COG0552 282 EA 283 (340)
T ss_pred Hh
Confidence 43
No 437
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=84.26 E-value=0.84 Score=49.34 Aligned_cols=26 Identities=35% Similarity=0.483 Sum_probs=22.2
Q ss_pred hccEEEEecCCCCCCcCChhhhhhhc
Q 001729 41 ENRVTLIVGETGCGKSSQVPQFLLAE 66 (1020)
Q Consensus 41 ~~~~vII~apTGSGKTt~ip~~lle~ 66 (1020)
.+..++|.|++|+|||+...+++.+.
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~ 49 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGA 49 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHH
Confidence 46889999999999999888887653
No 438
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=84.25 E-value=0.6 Score=52.12 Aligned_cols=26 Identities=27% Similarity=0.546 Sum_probs=22.0
Q ss_pred hccEEEEecCCCCCCcCChhhhhhhc
Q 001729 41 ENRVTLIVGETGCGKSSQVPQFLLAE 66 (1020)
Q Consensus 41 ~~~~vII~apTGSGKTt~ip~~lle~ 66 (1020)
.+.-+|+.|||||||||.+..|-++-
T Consensus 272 ~GElTvlTGpTGsGKTTFlsEYsLDL 297 (514)
T KOG2373|consen 272 PGELTVLTGPTGSGKTTFLSEYSLDL 297 (514)
T ss_pred CCceEEEecCCCCCceeEehHhhHHH
Confidence 35679999999999999988887764
No 439
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=84.13 E-value=1.8 Score=54.08 Aligned_cols=114 Identities=17% Similarity=0.159 Sum_probs=80.9
Q ss_pred ccccccEEEEecchhhHHHhhhhccc---c-----------------ccceEEEEeecccchHHHHHHHHhhhc---c--
Q 001729 273 SDIEKSILVFLPTYYALEQQWHLMKP---L-----------------SSFFKVHILHSSVDTEQALMAMKICKS---H-- 327 (1020)
Q Consensus 273 ~~~~g~iLVFl~~~~~ie~l~~~L~~---~-----------------~~~~~v~~lHs~l~~~er~~i~~~f~~---g-- 327 (1020)
.+.+.+.|||-.+.....-+-.+|.. . ..+..-+.+.|.....+|......|.+ .
T Consensus 1139 eeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRa 1218 (1567)
T KOG1015|consen 1139 EEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRA 1218 (1567)
T ss_pred HHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCccccee
Confidence 34467999998887766555555431 1 112345677899999999999888853 3
Q ss_pred ceEEEEeccccccccccceeEEeecccceeeeeeccccccceeeEEeehhHHHHhcCCCCcccCCeeEEeechh
Q 001729 328 RKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKS 401 (1020)
Q Consensus 328 rkVLVATniae~GIdIp~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~c~rLys~~ 401 (1020)
|-.||+|-...-|||+=..+-||- ||...+...- .+.+=|+=|-|-..|-.+|||+-..
T Consensus 1219 Rl~LISTRAGsLGiNLvAANRVII--------fDasWNPSyD-------tQSIFRvyRfGQtKPvyiYRfiAqG 1277 (1567)
T KOG1015|consen 1219 RLFLISTRAGSLGINLVAANRVII--------FDASWNPSYD-------TQSIFRVYRFGQTKPVYIYRFIAQG 1277 (1567)
T ss_pred EEEEEeeccCccccceeecceEEE--------EecccCCccc-------hHHHHHHHhhcCcCceeehhhhhcc
Confidence 378999999999999987777775 5544433211 2335688888999999999998754
No 440
>CHL00095 clpC Clp protease ATP binding subunit
Probab=84.08 E-value=1.3 Score=56.95 Aligned_cols=16 Identities=38% Similarity=0.540 Sum_probs=13.5
Q ss_pred EEEEecCCCCCCcCCh
Q 001729 44 VTLIVGETGCGKSSQV 59 (1020)
Q Consensus 44 ~vII~apTGSGKTt~i 59 (1020)
.++++||||+|||+..
T Consensus 541 ~~lf~Gp~GvGKt~lA 556 (821)
T CHL00095 541 SFLFSGPTGVGKTELT 556 (821)
T ss_pred EEEEECCCCCcHHHHH
Confidence 5789999999999643
No 441
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=83.99 E-value=0.61 Score=58.59 Aligned_cols=102 Identities=19% Similarity=0.216 Sum_probs=63.5
Q ss_pred hhhhHHHHHHHHhhccEEEEecCCCCCCcCChhh---hhhhc-CC--ccccccCCceehhhhHHHHHhhccccccCcccc
Q 001729 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQ---FLLAE-NM--EPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (1020)
Q Consensus 28 i~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~---~lle~-~~--~~IivtqPrrlaa~sva~rva~e~~~~lg~~Vg 101 (1020)
+.+.|.+++... +..++|.|..|||||+.+.. ++++. +. .+|+++..++-||..+.+|+...++..
T Consensus 3 Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~~~------ 74 (672)
T PRK10919 3 LNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLGRK------ 74 (672)
T ss_pred CCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhCcc------
Confidence 567788888753 46678889999999965443 33432 32 478888888888988888887754321
Q ss_pred eeccccccccccceEEeeechhhhHHHHHhcccc--ceeEEEEeeccc
Q 001729 102 YHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNA--LKYKVIILDEVH 147 (1020)
Q Consensus 102 y~i~~~~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l--~~~s~IIIDEaH 147 (1020)
....+.++|--.+...+....... ..-+.-|+|+.+
T Consensus 75 ----------~~~~v~i~TfHS~~~~iLr~~~~~~g~~~~~~i~d~~~ 112 (672)
T PRK10919 75 ----------EARGLMISTFHTLGLDIIKREYAALGMKSNFSLFDDTD 112 (672)
T ss_pred ----------cccCcEEEcHHHHHHHHHHHHHHHhCCCCCCeeCCHHH
Confidence 013467888766544333221010 022345778776
No 442
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=83.98 E-value=2.5 Score=48.21 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=22.9
Q ss_pred hhhHHHHHHHHhh--c---cEEEEecCCCCCCcCChhhh
Q 001729 29 MSLREKIVEKVLE--N---RVTLIVGETGCGKSSQVPQF 62 (1020)
Q Consensus 29 ~~~Q~eil~~i~~--~---~~vII~apTGSGKTt~ip~~ 62 (1020)
+|.++.....+.. + .-.++.||.|+|||+.+-.+
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~ 41 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFA 41 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHH
Confidence 4555555555542 2 36899999999999755444
No 443
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=83.98 E-value=1.7 Score=50.61 Aligned_cols=16 Identities=31% Similarity=0.474 Sum_probs=14.4
Q ss_pred ccEEEEecCCCCCCcC
Q 001729 42 NRVTLIVGETGCGKSS 57 (1020)
Q Consensus 42 ~~~vII~apTGSGKTt 57 (1020)
.+.+.|.|++|+|||.
T Consensus 113 ~nplfi~G~~GlGKTH 128 (408)
T COG0593 113 YNPLFIYGGVGLGKTH 128 (408)
T ss_pred CCcEEEECCCCCCHHH
Confidence 4679999999999996
No 444
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=83.87 E-value=2.4 Score=54.76 Aligned_cols=20 Identities=30% Similarity=0.600 Sum_probs=16.3
Q ss_pred ccEEEEecCCCCCCcCChhh
Q 001729 42 NRVTLIVGETGCGKSSQVPQ 61 (1020)
Q Consensus 42 ~~~vII~apTGSGKTt~ip~ 61 (1020)
..+.|++||+|+|||+.+-.
T Consensus 194 ~~n~lL~G~pGvGKT~l~~~ 213 (852)
T TIGR03346 194 KNNPVLIGEPGVGKTAIVEG 213 (852)
T ss_pred CCceEEEcCCCCCHHHHHHH
Confidence 36899999999999975543
No 445
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=83.83 E-value=0.95 Score=45.11 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=18.3
Q ss_pred HhhccEEEEecCCCCCCcCChh
Q 001729 39 VLENRVTLIVGETGCGKSSQVP 60 (1020)
Q Consensus 39 i~~~~~vII~apTGSGKTt~ip 60 (1020)
+..++.+.|.|+.||||||.+-
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~ 44 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLK 44 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHH
Confidence 3467899999999999997553
No 446
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=83.83 E-value=1.3 Score=50.64 Aligned_cols=39 Identities=15% Similarity=0.157 Sum_probs=23.6
Q ss_pred ceeEEEEeecccccccccceeehhhhhHhhccCCeEEEEee
Q 001729 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMS 176 (1020)
Q Consensus 136 ~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmS 176 (1020)
..+.++||||+|.. +.+....++|.+-.-.++..+|+.+
T Consensus 109 ~~~kvviI~~a~~~--~~~a~NaLLK~LEEPp~~~~~Il~t 147 (329)
T PRK08058 109 SNKKVYIIEHADKM--TASAANSLLKFLEEPSGGTTAILLT 147 (329)
T ss_pred cCceEEEeehHhhh--CHHHHHHHHHHhcCCCCCceEEEEe
Confidence 37899999999942 2333445555554444455555543
No 447
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=83.75 E-value=0.39 Score=50.72 Aligned_cols=21 Identities=38% Similarity=0.681 Sum_probs=18.4
Q ss_pred HhhccEEEEecCCCCCCcCCh
Q 001729 39 VLENRVTLIVGETGCGKSSQV 59 (1020)
Q Consensus 39 i~~~~~vII~apTGSGKTt~i 59 (1020)
+.++.+++|+||.||||||.+
T Consensus 25 v~~Gevv~iiGpSGSGKSTlL 45 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKSTLL 45 (240)
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 457899999999999999855
No 448
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=83.64 E-value=0.46 Score=50.46 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=17.8
Q ss_pred hccEEEEecCCCCCCcCChhhh
Q 001729 41 ENRVTLIVGETGCGKSSQVPQF 62 (1020)
Q Consensus 41 ~~~~vII~apTGSGKTt~ip~~ 62 (1020)
.++.++|.||.|+||||.+-..
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i 49 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQI 49 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 4578999999999999765443
No 449
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=83.56 E-value=1 Score=57.13 Aligned_cols=16 Identities=38% Similarity=0.563 Sum_probs=13.7
Q ss_pred EEEEecCCCCCCcCCh
Q 001729 44 VTLIVGETGCGKSSQV 59 (1020)
Q Consensus 44 ~vII~apTGSGKTt~i 59 (1020)
++++.||||+|||+.+
T Consensus 486 ~~lf~Gp~GvGKT~lA 501 (731)
T TIGR02639 486 SFLFTGPTGVGKTELA 501 (731)
T ss_pred eEEEECCCCccHHHHH
Confidence 5799999999999644
No 450
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=83.54 E-value=0.73 Score=44.76 Aligned_cols=46 Identities=24% Similarity=0.336 Sum_probs=28.0
Q ss_pred HHHHHHHhhccEEEEecCCCCCCcCChhhhhhhcCCccccccCCcee
Q 001729 33 EKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRF 79 (1020)
Q Consensus 33 ~eil~~i~~~~~vII~apTGSGKTt~ip~~lle~~~~~IivtqPrrl 79 (1020)
+.+...+..+.++++.|+-|+||||.+--++...+... .++.|+=.
T Consensus 6 ~~l~~~l~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~~-~V~SPTF~ 51 (123)
T PF02367_consen 6 KKLAQILKPGDVILLSGDLGAGKTTFVRGLARALGIDE-EVTSPTFS 51 (123)
T ss_dssp HHHHHHHSS-EEEEEEESTTSSHHHHHHHHHHHTT--S-----TTTT
T ss_pred HHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHHcCCCC-CcCCCCeE
Confidence 45566677889999999999999986655554444333 45556543
No 451
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=83.46 E-value=0.56 Score=54.37 Aligned_cols=23 Identities=39% Similarity=0.551 Sum_probs=18.4
Q ss_pred hhccEEEEecCCCCCCcCChhhh
Q 001729 40 LENRVTLIVGETGCGKSSQVPQF 62 (1020)
Q Consensus 40 ~~~~~vII~apTGSGKTt~ip~~ 62 (1020)
..+..++|+|||||||||.+-.+
T Consensus 147 ~~~GlilI~G~TGSGKTT~l~al 169 (372)
T TIGR02525 147 PAAGLGLICGETGSGKSTLAASI 169 (372)
T ss_pred hcCCEEEEECCCCCCHHHHHHHH
Confidence 35668899999999999876443
No 452
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=83.45 E-value=0.71 Score=52.30 Aligned_cols=25 Identities=24% Similarity=0.514 Sum_probs=20.2
Q ss_pred HhhccEEEEecCCCCCCcCChhhhh
Q 001729 39 VLENRVTLIVGETGCGKSSQVPQFL 63 (1020)
Q Consensus 39 i~~~~~vII~apTGSGKTt~ip~~l 63 (1020)
+..+.+++|+|+|||||||.+-.++
T Consensus 141 v~~~~~ili~G~tGsGKTTll~al~ 165 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFLKSLV 165 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHHHHHH
Confidence 4567899999999999998764433
No 453
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=83.43 E-value=1.7 Score=52.54 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=16.7
Q ss_pred cEEEEecCCCCCCcCChhhhh
Q 001729 43 RVTLIVGETGCGKSSQVPQFL 63 (1020)
Q Consensus 43 ~~vII~apTGSGKTt~ip~~l 63 (1020)
+.+++.||+|+|||+.+-.+.
T Consensus 89 ~giLL~GppGtGKT~la~alA 109 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAKAVA 109 (495)
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 469999999999997654443
No 454
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=83.38 E-value=3.2 Score=47.11 Aligned_cols=30 Identities=23% Similarity=0.389 Sum_probs=20.8
Q ss_pred HHHHHHHhhc---cEEEEecCCCCCCcCChhhh
Q 001729 33 EKIVEKVLEN---RVTLIVGETGCGKSSQVPQF 62 (1020)
Q Consensus 33 ~eil~~i~~~---~~vII~apTGSGKTt~ip~~ 62 (1020)
..+..++.++ ...++.||.|+||++.+..+
T Consensus 14 ~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~ 46 (314)
T PRK07399 14 ELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCF 46 (314)
T ss_pred HHHHHHHHhCCCCceEEEECCCCCCHHHHHHHH
Confidence 3444445555 47899999999999655444
No 455
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=83.10 E-value=2.4 Score=50.70 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=16.4
Q ss_pred cEEEEecCCCCCCcCChhhhh
Q 001729 43 RVTLIVGETGCGKSSQVPQFL 63 (1020)
Q Consensus 43 ~~vII~apTGSGKTt~ip~~l 63 (1020)
+..|+.||.|+|||+.+-.+.
T Consensus 40 ha~Lf~Gp~G~GKtt~A~~lA 60 (451)
T PRK06305 40 HAYLFSGIRGTGKTTLARIFA 60 (451)
T ss_pred eEEEEEcCCCCCHHHHHHHHH
Confidence 357899999999997654443
No 456
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=82.95 E-value=0.94 Score=46.12 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=19.6
Q ss_pred HhhccEEEEecCCCCCCcCChhhh
Q 001729 39 VLENRVTLIVGETGCGKSSQVPQF 62 (1020)
Q Consensus 39 i~~~~~vII~apTGSGKTt~ip~~ 62 (1020)
+..+..+.|.|+.||||||.+-.+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i 46 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKIL 46 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHH
Confidence 457899999999999999865433
No 457
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=82.75 E-value=0.51 Score=52.20 Aligned_cols=26 Identities=31% Similarity=0.666 Sum_probs=23.2
Q ss_pred CCccceeccCCCCCCCC-CccCCCCCCC
Q 001729 765 PACKFFYSLQGCRNGDS-CIFSHDLGQP 791 (1020)
Q Consensus 765 ~~C~~f~~~g~C~~g~~-C~f~H~~~~~ 791 (1020)
.+|+-| ++|.|+.||+ |+|.|+....
T Consensus 38 eVCReF-~rn~C~R~d~~CkfaHP~~~~ 64 (331)
T KOG2494|consen 38 EVCREF-LRNTCSRGDRECKFAHPPKNC 64 (331)
T ss_pred HHHHHH-HhccccCCCccccccCCCCCC
Confidence 479999 9999999999 9999998543
No 458
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=82.50 E-value=0.73 Score=30.80 Aligned_cols=20 Identities=50% Similarity=1.193 Sum_probs=0.0
Q ss_pred ccceeeccc-cccCCCCCCCCc
Q 001729 738 PLCVYFING-SCNRGTGCPFSH 758 (1020)
Q Consensus 738 ~~C~~f~~G-~C~~G~~C~f~H 758 (1020)
++|.|-++| .|...+ |.|.|
T Consensus 1 ~lC~yEl~Gg~Cnd~~-C~~QH 21 (23)
T PF10650_consen 1 PLCPYELTGGVCNDPD-CEFQH 21 (23)
T ss_pred CCCccccCCCeeCCCC-CCccc
No 459
>PLN02165 adenylate isopentenyltransferase
Probab=82.47 E-value=0.39 Score=54.43 Aligned_cols=28 Identities=32% Similarity=0.506 Sum_probs=19.7
Q ss_pred HHHHHHHHhhccEEEEecCCCCCCcCCh
Q 001729 32 REKIVEKVLENRVTLIVGETGCGKSSQV 59 (1020)
Q Consensus 32 Q~eil~~i~~~~~vII~apTGSGKTt~i 59 (1020)
|......-..+.+++|+||||||||+..
T Consensus 33 ~~~~~~~~~~g~iivIiGPTGSGKStLA 60 (334)
T PLN02165 33 TSVAMEQNCKDKVVVIMGATGSGKSRLS 60 (334)
T ss_pred cccccccCCCCCEEEEECCCCCcHHHHH
Confidence 3333333345678999999999999744
No 460
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.45 E-value=0.4 Score=52.17 Aligned_cols=25 Identities=28% Similarity=0.753 Sum_probs=22.1
Q ss_pred CCccceeec-cccccCCCCCCCCcCc
Q 001729 736 EAPLCVYFI-NGSCNRGTGCPFSHSL 760 (1020)
Q Consensus 736 ~~~~C~~f~-~G~C~~G~~C~f~H~~ 760 (1020)
.+.+|+-|. +|.|.+|++|+|.|+.
T Consensus 185 qpDicKdykeTgycg~gdSckFlh~r 210 (313)
T KOG1813|consen 185 QPDICKDYKETGYCGYGDSCKFLHDR 210 (313)
T ss_pred CchhhhhhHhhCcccccchhhhhhhh
Confidence 667899999 7999999999999986
No 461
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=82.44 E-value=0.73 Score=58.72 Aligned_cols=117 Identities=17% Similarity=0.091 Sum_probs=62.7
Q ss_pred hhhHHHHHHHHhhccEEEEecCCCCCCcCChhhh--hhhc-CCccccccCCceehhhhHHHHHhhccccccCcccceecc
Q 001729 29 MSLREKIVEKVLENRVTLIVGETGCGKSSQVPQF--LLAE-NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIG 105 (1020)
Q Consensus 29 ~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~--lle~-~~~~IivtqPrrlaa~sva~rva~e~~~~lg~~Vgy~i~ 105 (1020)
.+|--+++-.+.=++--|..+.||=|||+...++ +..- |.+.-+||.- .-+|.-=++.+.... ..+|-+||....
T Consensus 169 ~~yDVQliGgivLh~G~IAEM~TGEGKTLvAtlp~yLnAL~GkgVHvVTVN-DYLA~RDaewmgply-~fLGLsvg~i~~ 246 (1112)
T PRK12901 169 VHYDVQLIGGVVLHQGKIAEMATGEGKTLVATLPVYLNALTGNGVHVVTVN-DYLAKRDSEWMGPLY-EFHGLSVDCIDK 246 (1112)
T ss_pred cccchHHhhhhhhcCCceeeecCCCCchhHHHHHHHHHHHcCCCcEEEEec-hhhhhccHHHHHHHH-HHhCCceeecCC
Confidence 3444557777766777799999999999654444 3332 2233444443 233332233322211 134555553322
Q ss_pred -----ccccccccceEEeeechhh-----hHHHHH--hccccceeEEEEeeccc
Q 001729 106 -----HSKHLSERSKIVFKTAGVL-----LDEMRD--RGLNALKYKVIILDEVH 147 (1020)
Q Consensus 106 -----~~~~~~~~t~Iiv~Tpg~L-----l~~l~~--~~l~l~~~s~IIIDEaH 147 (1020)
.+.+..-.++|+|+|..-| .+.|.. +..-...+.+.|||||+
T Consensus 247 ~~~~~~~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvD 300 (1112)
T PRK12901 247 HQPNSEARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVD 300 (1112)
T ss_pred CCCCHHHHHHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechh
Confidence 1122233689999997443 222221 11112368899999999
No 462
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=82.44 E-value=0.5 Score=45.09 Aligned_cols=18 Identities=39% Similarity=0.641 Sum_probs=14.8
Q ss_pred EEEEecCCCCCCcCChhh
Q 001729 44 VTLIVGETGCGKSSQVPQ 61 (1020)
Q Consensus 44 ~vII~apTGSGKTt~ip~ 61 (1020)
+++|+|++||||||..-.
T Consensus 1 vI~I~G~~gsGKST~a~~ 18 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKE 18 (121)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHH
Confidence 478999999999985533
No 463
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=82.42 E-value=0.58 Score=53.82 Aligned_cols=23 Identities=30% Similarity=0.618 Sum_probs=18.9
Q ss_pred hccEEEEecCCCCCCcCChhhhh
Q 001729 41 ENRVTLIVGETGCGKSSQVPQFL 63 (1020)
Q Consensus 41 ~~~~vII~apTGSGKTt~ip~~l 63 (1020)
.+..++|+|||||||||.+-.++
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~ 143 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMI 143 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999998775544
No 464
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=82.31 E-value=0.93 Score=47.00 Aligned_cols=42 Identities=7% Similarity=0.097 Sum_probs=24.6
Q ss_pred ceeEEEEeecccccccccceeehhhhhHhhccC-CeEEEEeecc
Q 001729 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKN-DLRVVLMSAT 178 (1020)
Q Consensus 136 ~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~-~lkiIlmSAT 178 (1020)
.+.+++|+||.. ..++......+.+.+..... ...+|+.|--
T Consensus 115 ~~p~llilDEp~-~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~ 157 (178)
T cd03239 115 KPSPFYVLDEID-AALDPTNRRRVSDMIKEMAKHTSQFIVITLK 157 (178)
T ss_pred CCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 367999999999 56665544444444433222 3456655543
No 465
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=82.30 E-value=2 Score=54.75 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=16.3
Q ss_pred ccEEEEecCCCCCCcCChhh
Q 001729 42 NRVTLIVGETGCGKSSQVPQ 61 (1020)
Q Consensus 42 ~~~vII~apTGSGKTt~ip~ 61 (1020)
.+.+++.||+|+|||+.+-.
T Consensus 212 ~~giLL~GppGtGKT~lara 231 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAKA 231 (733)
T ss_pred CceEEEECCCCCChHHHHHH
Confidence 36799999999999975543
No 466
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=82.29 E-value=0.84 Score=57.91 Aligned_cols=101 Identities=17% Similarity=0.135 Sum_probs=63.3
Q ss_pred hhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhh---hhh-cCC--ccccccCCceehhhhHHHHHhhccccccCcccc
Q 001729 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQF---LLA-ENM--EPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (1020)
Q Consensus 28 i~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~---lle-~~~--~~IivtqPrrlaa~sva~rva~e~~~~lg~~Vg 101 (1020)
+.+-|.+++... ...++|.|..|||||+.+..- +++ .+. ..|+++.-++-||..+.+|+....+..
T Consensus 10 Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~~~------ 81 (721)
T PRK11773 10 LNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLGTS------ 81 (721)
T ss_pred cCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhccC------
Confidence 677888888743 467889999999999655433 343 232 368888888888888888887754311
Q ss_pred eeccccccccccceEEeeechhhhHHHHHhccc-c-ceeEEEEeeccc
Q 001729 102 YHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLN-A-LKYKVIILDEVH 147 (1020)
Q Consensus 102 y~i~~~~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~-l-~~~s~IIIDEaH 147 (1020)
...+.++|--.+...+...... . ..-+.-|+|+.+
T Consensus 82 -----------~~~~~i~TfHs~~~~iLr~~~~~~g~~~~f~i~d~~d 118 (721)
T PRK11773 82 -----------QGGMWVGTFHGLAHRLLRAHWQDANLPQDFQILDSDD 118 (721)
T ss_pred -----------CCCCEEEcHHHHHHHHHHHHHHHhCCCCCCeecCHHH
Confidence 1246778876554443322100 0 022345788876
No 467
>CHL00095 clpC Clp protease ATP binding subunit
Probab=82.25 E-value=2.8 Score=53.96 Aligned_cols=20 Identities=25% Similarity=0.562 Sum_probs=16.2
Q ss_pred ccEEEEecCCCCCCcCChhh
Q 001729 42 NRVTLIVGETGCGKSSQVPQ 61 (1020)
Q Consensus 42 ~~~vII~apTGSGKTt~ip~ 61 (1020)
.++++++||+|+|||+.+-.
T Consensus 200 ~~n~lL~G~pGvGKTal~~~ 219 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAEG 219 (821)
T ss_pred cCCeEEECCCCCCHHHHHHH
Confidence 36899999999999975533
No 468
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=82.08 E-value=2.2 Score=48.61 Aligned_cols=41 Identities=12% Similarity=0.084 Sum_probs=26.6
Q ss_pred ceeEEEEeecccccccccceeehhhhhHhhccCCeEEEEeecc
Q 001729 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (1020)
Q Consensus 136 ~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmSAT 178 (1020)
..+.++|||+||. ++......++|.+-.-.++..+|+.|..
T Consensus 106 g~~KV~iI~~a~~--m~~~AaNaLLKtLEEPp~~~~fiL~t~~ 146 (325)
T PRK06871 106 GGNKVVYIQGAER--LTEAAANALLKTLEEPRPNTYFLLQADL 146 (325)
T ss_pred CCceEEEEechhh--hCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 3789999999993 3334455667766554555655555443
No 469
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=82.01 E-value=0.6 Score=56.99 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=19.3
Q ss_pred hhccEEEEecCCCCCCcCChhhh
Q 001729 40 LENRVTLIVGETGCGKSSQVPQF 62 (1020)
Q Consensus 40 ~~~~~vII~apTGSGKTt~ip~~ 62 (1020)
..|+.+.|+||+||||||.+-..
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL 381 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLL 381 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999866444
No 470
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=81.99 E-value=3.6 Score=52.37 Aligned_cols=18 Identities=39% Similarity=0.680 Sum_probs=15.3
Q ss_pred ccEEEEecCCCCCCcCCh
Q 001729 42 NRVTLIVGETGCGKSSQV 59 (1020)
Q Consensus 42 ~~~vII~apTGSGKTt~i 59 (1020)
..++|+.||+|+|||+.+
T Consensus 203 ~~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIA 220 (731)
T ss_pred CCceEEECCCCCCHHHHH
Confidence 358999999999999644
No 471
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=81.96 E-value=3.1 Score=47.57 Aligned_cols=46 Identities=28% Similarity=0.442 Sum_probs=36.4
Q ss_pred cCcchhhhHHHHHHHHhhcc------EEEEecCCCCCCcCChhhhhhhcCCc
Q 001729 24 SSLPVMSLREKIVEKVLENR------VTLIVGETGCGKSSQVPQFLLAENME 69 (1020)
Q Consensus 24 ~~LPi~~~Q~eil~~i~~~~------~vII~apTGSGKTt~ip~~lle~~~~ 69 (1020)
+..|-++.|-..+..+..++ .++|-|.+|+|||..+-+++......
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~ 57 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLE 57 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCc
Confidence 46788889999999988664 45899999999998888877665433
No 472
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=81.90 E-value=1.4 Score=50.46 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=20.6
Q ss_pred hccEEEEecCCCCCCcCChhhhhhh
Q 001729 41 ENRVTLIVGETGCGKSSQVPQFLLA 65 (1020)
Q Consensus 41 ~~~~vII~apTGSGKTt~ip~~lle 65 (1020)
.+..+.|.|++|||||+...+++..
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~ 149 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVT 149 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHH
Confidence 4578999999999999877777653
No 473
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=81.78 E-value=0.64 Score=52.63 Aligned_cols=103 Identities=24% Similarity=0.282 Sum_probs=53.3
Q ss_pred hccEEEEecCCCCCCcCChhhhhhhcCCccccccCCceehhhhHHHHHhhccccccCcccceeccccccccccceEEeee
Q 001729 41 ENRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVFKT 120 (1020)
Q Consensus 41 ~~~~vII~apTGSGKTt~ip~~lle~~~~~IivtqPrrlaa~sva~rva~e~~~~lg~~Vgy~i~~~~~~~~~t~Iiv~T 120 (1020)
..+.+++-||.|+|||. +|+.++++.|...+..-++.+. .=.|+-
T Consensus 126 p~kGiLL~GPpG~GKTm--------------------------lAKA~Akeaga~fInv~~s~lt---------~KWfgE 170 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTM--------------------------LAKAIAKEAGANFINVSVSNLT---------SKWFGE 170 (386)
T ss_pred CCccceecCCCCchHHH--------------------------HHHHHHHHcCCCcceeeccccc---------hhhHHH
Confidence 34689999999999993 2444555554443332111111 111344
Q ss_pred chhhhHHHHHhccccceeEEEEeecccc----cccccceeehhhhh-------HhhccCCeEEEEeeccc
Q 001729 121 AGVLLDEMRDRGLNALKYKVIILDEVHE----RSVESDLVLVCVKQ-------LLLKKNDLRVVLMSATA 179 (1020)
Q Consensus 121 pg~Ll~~l~~~~l~l~~~s~IIIDEaHE----R~l~~d~ll~~lk~-------ll~~~~~lkiIlmSATl 179 (1020)
.+.+.+.+..-.- -...+.|.|||++- |.....-....+|. -+....+-+|++|-||=
T Consensus 171 ~eKlv~AvFslAs-Kl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATN 239 (386)
T KOG0737|consen 171 AQKLVKAVFSLAS-KLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATN 239 (386)
T ss_pred HHHHHHHHHhhhh-hcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCC
Confidence 4555555432111 12788999999983 21111111111111 12234556899999994
No 474
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=81.74 E-value=0.72 Score=57.97 Aligned_cols=103 Identities=20% Similarity=0.211 Sum_probs=64.1
Q ss_pred hhhhHHHHHHHHhhccEEEEecCCCCCCcCChhhh---hhhc-CC--ccccccCCceehhhhHHHHHhhccccccCcccc
Q 001729 28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQF---LLAE-NM--EPILCTQPRRFAVVAVAKMVAKGRNCELGGEVG 101 (1020)
Q Consensus 28 i~~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~---lle~-~~--~~IivtqPrrlaa~sva~rva~e~~~~lg~~Vg 101 (1020)
+.+-|.+++.. ....++|.|..|||||+.+..- +++. +. ..|+++..++-+|..+.+|+...++..
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~~------ 73 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLGKG------ 73 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhCcc------
Confidence 45678888764 3567899999999999665544 3332 22 367777777888888888887654311
Q ss_pred eeccccccccccceEEeeechhhhHHHHHhcccc--ceeEEEEeecccc
Q 001729 102 YHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNA--LKYKVIILDEVHE 148 (1020)
Q Consensus 102 y~i~~~~~~~~~t~Iiv~Tpg~Ll~~l~~~~l~l--~~~s~IIIDEaHE 148 (1020)
...++.+.|-..|...+....... .....-|+||...
T Consensus 74 ----------~~~~v~v~TfHs~a~~il~~~~~~~g~~~~~~il~~~~~ 112 (664)
T TIGR01074 74 ----------EARGLTISTFHTLGLDIIKREYNALGYKSNFSLFDETDQ 112 (664)
T ss_pred ----------ccCCeEEEeHHHHHHHHHHHHHHHhCCCCCCEEeCHHHH
Confidence 124577888766655443221000 0223457888773
No 475
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=81.74 E-value=0.57 Score=51.29 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=19.4
Q ss_pred HhhccEEEEecCCCCCCcCChhh
Q 001729 39 VLENRVTLIVGETGCGKSSQVPQ 61 (1020)
Q Consensus 39 i~~~~~vII~apTGSGKTt~ip~ 61 (1020)
+..++.++|.||.|+||||.+-.
T Consensus 13 i~~Gqr~~I~G~~G~GKTTLlr~ 35 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTLLQS 35 (249)
T ss_pred cCCCCEEEEECCCCCCHHHHHHH
Confidence 45789999999999999986544
No 476
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=81.68 E-value=1 Score=53.88 Aligned_cols=62 Identities=21% Similarity=0.329 Sum_probs=40.1
Q ss_pred hhHHHHHHHHhhccEEEEecCCCCCCcCChhhh---hhhcCC-----ccccccCCceehhhhHHHHHhhccc
Q 001729 30 SLREKIVEKVLENRVTLIVGETGCGKSSQVPQF---LLAENM-----EPILCTQPRRFAVVAVAKMVAKGRN 93 (1020)
Q Consensus 30 ~~Q~eil~~i~~~~~vII~apTGSGKTt~ip~~---lle~~~-----~~IivtqPrrlaa~sva~rva~e~~ 93 (1020)
+-|.+|+.. ..+..+||.|..||||||+..+- ++-... +.|+++.|.++...-++ +|--++|
T Consensus 215 kEQneIIR~-ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis-~VLPeLG 284 (747)
T COG3973 215 KEQNEIIRF-EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYIS-RVLPELG 284 (747)
T ss_pred HhHHHHHhc-cCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHH-Hhchhhc
Confidence 445555553 46789999999999999876654 333222 25899999888654433 3333444
No 477
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=81.63 E-value=1.3 Score=44.93 Aligned_cols=20 Identities=35% Similarity=0.629 Sum_probs=16.5
Q ss_pred cEEEEecCCCCCCcCChhhh
Q 001729 43 RVTLIVGETGCGKSSQVPQF 62 (1020)
Q Consensus 43 ~~vII~apTGSGKTt~ip~~ 62 (1020)
+.++|+||.|||||+.+-..
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i 41 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAI 41 (162)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 58999999999999765443
No 478
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=81.60 E-value=1.9 Score=54.85 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=17.1
Q ss_pred cEEEEecCCCCCCcCChhhhhhh
Q 001729 43 RVTLIVGETGCGKSSQVPQFLLA 65 (1020)
Q Consensus 43 ~~vII~apTGSGKTt~ip~~lle 65 (1020)
+.+++.||+|||||+.+-.+..+
T Consensus 488 ~giLL~GppGtGKT~lakalA~e 510 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLAKAVATE 510 (733)
T ss_pred ceEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999755444433
No 479
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=81.43 E-value=1.2 Score=53.40 Aligned_cols=46 Identities=22% Similarity=0.248 Sum_probs=31.4
Q ss_pred cEEEEecCCCCCCcCChhhhhhhcCCccccccCCceehhhhHHHHH
Q 001729 43 RVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMV 88 (1020)
Q Consensus 43 ~~vII~apTGSGKTt~ip~~lle~~~~~IivtqPrrlaa~sva~rv 88 (1020)
.+++|+||||||||+.+..+-+-...+.+||+-|...+....+...
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~~~s~iV~D~KgEl~~~t~~~r 90 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNYPGSMIVTDPKGELYEKTAGYR 90 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhccCCEEEEECCCcHHHHHHHHH
Confidence 4799999999999955433322223347888888877766555543
No 480
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=81.33 E-value=0.95 Score=50.30 Aligned_cols=32 Identities=31% Similarity=0.588 Sum_probs=23.9
Q ss_pred HHHHHH-hhccEEEEecCCCCCCcCChhhhhhh
Q 001729 34 KIVEKV-LENRVTLIVGETGCGKSSQVPQFLLA 65 (1020)
Q Consensus 34 eil~~i-~~~~~vII~apTGSGKTt~ip~~lle 65 (1020)
.+++.+ ..++.++++||||||||..+-..+.+
T Consensus 24 ~ll~~l~~~~~pvLl~G~~GtGKT~li~~~l~~ 56 (272)
T PF12775_consen 24 YLLDLLLSNGRPVLLVGPSGTGKTSLIQNFLSS 56 (272)
T ss_dssp HHHHHHHHCTEEEEEESSTTSSHHHHHHHHHHC
T ss_pred HHHHHHHHcCCcEEEECCCCCchhHHHHhhhcc
Confidence 344444 56789999999999999877666543
No 481
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=81.21 E-value=1.6 Score=45.51 Aligned_cols=122 Identities=14% Similarity=0.235 Sum_probs=58.8
Q ss_pred ccEEEEecCCCCCCcCChhhhhhhc--CCccccccCCceehhhhHHHHHhhccccccCcccceeccccccccccceEEee
Q 001729 42 NRVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVFK 119 (1020)
Q Consensus 42 ~~~vII~apTGSGKTt~ip~~lle~--~~~~IivtqPrrlaa~sva~rva~e~~~~lg~~Vgy~i~~~~~~~~~t~Iiv~ 119 (1020)
++..+++||-.||||+-+.+.+... ...++++.-|. +-.|.... .+....|. ...-+.|-
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~------iD~R~~~~---~V~Sr~G~---------~~~A~~i~ 65 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPA------IDTRYGVG---KVSSRIGL---------SSEAVVIP 65 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEecc------cccccccc---eeeeccCC---------cccceecC
Confidence 5677999999999998777766432 22344444441 11111000 01111111 11223344
Q ss_pred echhhhHHHHHhccccceeEEEEeecccccccccceeehhhhhHhhccCCeEEEEeecccchhhhhHHH
Q 001729 120 TAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADITKYRDYF 188 (1020)
Q Consensus 120 Tpg~Ll~~l~~~~l~l~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmSATld~~~~~~~f 188 (1020)
.+.-+...+..... ...+++|.||||+- ++.+ +...+.++. .++-+-++-+.++.+...+.|
T Consensus 66 ~~~~i~~~i~~~~~-~~~~~~v~IDEaQF--~~~~-~v~~l~~la---d~lgi~Vi~~GL~~DFrgepF 127 (201)
T COG1435 66 SDTDIFDEIAALHE-KPPVDCVLIDEAQF--FDEE-LVYVLNELA---DRLGIPVICYGLDTDFRGEPF 127 (201)
T ss_pred ChHHHHHHHHhccc-CCCcCEEEEehhHh--CCHH-HHHHHHHHH---hhcCCEEEEeccccccccCCC
Confidence 44455555543221 11378999999992 2211 222233332 223455566677655444444
No 482
>PRK13764 ATPase; Provisional
Probab=81.02 E-value=0.93 Score=55.58 Aligned_cols=30 Identities=33% Similarity=0.493 Sum_probs=22.2
Q ss_pred HHHHHHHh-hccEEEEecCCCCCCcCChhhh
Q 001729 33 EKIVEKVL-ENRVTLIVGETGCGKSSQVPQF 62 (1020)
Q Consensus 33 ~eil~~i~-~~~~vII~apTGSGKTt~ip~~ 62 (1020)
.++++.+. .+++++|+|+|||||||.+..+
T Consensus 247 ~~l~~~l~~~~~~ILIsG~TGSGKTTll~AL 277 (602)
T PRK13764 247 EKLKERLEERAEGILIAGAPGAGKSTFAQAL 277 (602)
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHH
Confidence 34555554 4678999999999999866443
No 483
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=80.99 E-value=1.4 Score=45.27 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=19.2
Q ss_pred HhhccEEEEecCCCCCCcCChhhh
Q 001729 39 VLENRVTLIVGETGCGKSSQVPQF 62 (1020)
Q Consensus 39 i~~~~~vII~apTGSGKTt~ip~~ 62 (1020)
+..++.+.|.||.||||||.+-.+
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l 48 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLI 48 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHH
Confidence 347889999999999999855433
No 484
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=80.84 E-value=1.4 Score=52.82 Aligned_cols=16 Identities=38% Similarity=0.733 Sum_probs=13.9
Q ss_pred cEEEEecCCCCCCcCC
Q 001729 43 RVTLIVGETGCGKSSQ 58 (1020)
Q Consensus 43 ~~vII~apTGSGKTt~ 58 (1020)
.-|+++||+|||||..
T Consensus 546 sGvLL~GPPGCGKTLl 561 (802)
T KOG0733|consen 546 SGVLLCGPPGCGKTLL 561 (802)
T ss_pred CceEEeCCCCccHHHH
Confidence 4789999999999953
No 485
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=80.82 E-value=0.68 Score=45.49 Aligned_cols=23 Identities=22% Similarity=0.405 Sum_probs=18.1
Q ss_pred EEEEecCCCCCCcCChhhhhhhc
Q 001729 44 VTLIVGETGCGKSSQVPQFLLAE 66 (1020)
Q Consensus 44 ~vII~apTGSGKTt~ip~~lle~ 66 (1020)
+++++|++||||||.+-.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 47999999999999776655443
No 486
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=80.82 E-value=0.55 Score=50.38 Aligned_cols=22 Identities=32% Similarity=0.524 Sum_probs=18.7
Q ss_pred HhhccEEEEecCCCCCCcCChh
Q 001729 39 VLENRVTLIVGETGCGKSSQVP 60 (1020)
Q Consensus 39 i~~~~~vII~apTGSGKTt~ip 60 (1020)
+.++..+.|.||+||||||.+-
T Consensus 28 i~~Ge~vaI~GpSGSGKSTLLn 49 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKSTLLN 49 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHH
Confidence 4578899999999999998653
No 487
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=80.79 E-value=2.9 Score=53.96 Aligned_cols=17 Identities=35% Similarity=0.696 Sum_probs=15.0
Q ss_pred cEEEEecCCCCCCcCCh
Q 001729 43 RVTLIVGETGCGKSSQV 59 (1020)
Q Consensus 43 ~~vII~apTGSGKTt~i 59 (1020)
.+.|++||.|+|||+.+
T Consensus 209 ~n~lLvG~pGvGKTal~ 225 (852)
T TIGR03345 209 NNPILTGEAGVGKTAVV 225 (852)
T ss_pred CceeEECCCCCCHHHHH
Confidence 68999999999999754
No 488
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=80.72 E-value=2.5 Score=53.29 Aligned_cols=74 Identities=19% Similarity=0.268 Sum_probs=60.8
Q ss_pred ccEEEEecchhhHHHhhhhcccccc--ceEEEEeecccchHHHHHHHHhhhccc-eEEEEecc-ccccccccceeEEe
Q 001729 277 KSILVFLPTYYALEQQWHLMKPLSS--FFKVHILHSSVDTEQALMAMKICKSHR-KVILATNI-AESSVTIPKVAYVI 350 (1020)
Q Consensus 277 g~iLVFl~~~~~ie~l~~~L~~~~~--~~~v~~lHs~l~~~er~~i~~~f~~gr-kVLVATni-ae~GIdIp~V~~VI 350 (1020)
.+++|.+||+.-+.+.++.+..... ++.+..+||+++..+|..++.....|. .|||+|.. +...+.+.++.+||
T Consensus 311 ~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 311 YQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred CeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 5799999999988888777765332 478999999999999999888888887 99999964 55567788888887
No 489
>PF12846 AAA_10: AAA-like domain
Probab=80.67 E-value=0.7 Score=51.32 Aligned_cols=23 Identities=43% Similarity=0.674 Sum_probs=18.7
Q ss_pred ccEEEEecCCCCCCcCChhhhhh
Q 001729 42 NRVTLIVGETGCGKSSQVPQFLL 64 (1020)
Q Consensus 42 ~~~vII~apTGSGKTt~ip~~ll 64 (1020)
|.+++|+|+||||||+.+-.++.
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~ 23 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLE 23 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 57899999999999987765543
No 490
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=80.54 E-value=0.84 Score=51.75 Aligned_cols=30 Identities=20% Similarity=0.316 Sum_probs=23.6
Q ss_pred HHHHHhhccEEEEecCCCCCCcCChhhhhh
Q 001729 35 IVEKVLENRVTLIVGETGCGKSSQVPQFLL 64 (1020)
Q Consensus 35 il~~i~~~~~vII~apTGSGKTt~ip~~ll 64 (1020)
+..++..+++++++|+|||||||.+-..+.
T Consensus 136 L~~~ie~~~siii~G~t~sGKTt~lnall~ 165 (312)
T COG0630 136 LWLAIEARKSIIICGGTASGKTTLLNALLD 165 (312)
T ss_pred HHHHHHcCCcEEEECCCCCCHHHHHHHHHH
Confidence 455567889999999999999987655443
No 491
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=80.47 E-value=2.6 Score=53.46 Aligned_cols=18 Identities=39% Similarity=0.706 Sum_probs=15.2
Q ss_pred ccEEEEecCCCCCCcCCh
Q 001729 42 NRVTLIVGETGCGKSSQV 59 (1020)
Q Consensus 42 ~~~vII~apTGSGKTt~i 59 (1020)
..++++.||+|+|||+.+
T Consensus 207 ~~n~LLvGppGvGKT~la 224 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 458999999999999654
No 492
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=80.41 E-value=1.3 Score=50.22 Aligned_cols=28 Identities=18% Similarity=0.283 Sum_probs=22.5
Q ss_pred HhhccEEEEecCCCCCCcCChhhhhhhc
Q 001729 39 VLENRVTLIVGETGCGKSSQVPQFLLAE 66 (1020)
Q Consensus 39 i~~~~~vII~apTGSGKTt~ip~~lle~ 66 (1020)
+..++.+.|.||+|||||+...+++.+.
T Consensus 52 lp~G~iteI~G~~GsGKTtLaL~~~~~~ 79 (321)
T TIGR02012 52 LPRGRIIEIYGPESSGKTTLALHAIAEA 79 (321)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3345899999999999998877777653
No 493
>PRK12608 transcription termination factor Rho; Provisional
Probab=80.35 E-value=1.1 Score=51.73 Aligned_cols=36 Identities=25% Similarity=0.317 Sum_probs=28.0
Q ss_pred hhhhHHHHHHHHh---hccEEEEecCCCCCCcCChhhhh
Q 001729 28 VMSLREKIVEKVL---ENRVTLIVGETGCGKSSQVPQFL 63 (1020)
Q Consensus 28 i~~~Q~eil~~i~---~~~~vII~apTGSGKTt~ip~~l 63 (1020)
....-.++++.+. +++..+|.||.|+||||.+-.++
T Consensus 116 ~~~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la 154 (380)
T PRK12608 116 SDDLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIA 154 (380)
T ss_pred CcchhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHH
Confidence 3345566788765 78999999999999998776644
No 494
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=80.09 E-value=0.74 Score=47.36 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=17.4
Q ss_pred ccEEEEecCCCCCCcCChhhhh
Q 001729 42 NRVTLIVGETGCGKSSQVPQFL 63 (1020)
Q Consensus 42 ~~~vII~apTGSGKTt~ip~~l 63 (1020)
++.++|.||+||||||++-.++
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~ 22 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALL 22 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4678999999999998654443
No 495
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=79.78 E-value=13 Score=46.26 Aligned_cols=52 Identities=27% Similarity=0.234 Sum_probs=31.2
Q ss_pred eeEEEEeecccc----cccccceeehh---hhhHhhc------cCCeEEEEeecccchhhhhHHH
Q 001729 137 KYKVIILDEVHE----RSVESDLVLVC---VKQLLLK------KNDLRVVLMSATADITKYRDYF 188 (1020)
Q Consensus 137 ~~s~IIIDEaHE----R~l~~d~ll~~---lk~ll~~------~~~lkiIlmSATld~~~~~~~f 188 (1020)
..-+|.+||.+- |+...|-...+ +.+++.. .+.-.|.++.||=.++.+..-+
T Consensus 764 ~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpAL 828 (953)
T KOG0736|consen 764 APCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPAL 828 (953)
T ss_pred CCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhh
Confidence 678899999993 66666654332 2233321 1345788899995444444443
No 496
>PRK05580 primosome assembly protein PriA; Validated
Probab=79.75 E-value=2.7 Score=52.84 Aligned_cols=72 Identities=21% Similarity=0.235 Sum_probs=57.1
Q ss_pred ccEEEEecchhhHHHhhhhccccccceEEEEeecccchHHHHHHHHhhhccc-eEEEEeccccccccccceeEEe
Q 001729 277 KSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVI 350 (1020)
Q Consensus 277 g~iLVFl~~~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~gr-kVLVATniae~GIdIp~V~~VI 350 (1020)
+++||.+|+++-+.++.+.++... +..+..+||+++..+|.........+. +|||+|.-+-. +.+.++.+||
T Consensus 191 ~~vLvLvPt~~L~~Q~~~~l~~~f-g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~liV 263 (679)
T PRK05580 191 KQALVLVPEIALTPQMLARFRARF-GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLGLII 263 (679)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHh-CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCCEEE
Confidence 589999999999999888887532 357889999999999888877777777 99999974432 4566777766
No 497
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=79.42 E-value=3.2 Score=47.21 Aligned_cols=41 Identities=10% Similarity=0.190 Sum_probs=27.1
Q ss_pred ceeEEEEeecccccccccceeehhhhhHhhccCCeEEEEeecc
Q 001729 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178 (1020)
Q Consensus 136 ~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~~~lkiIlmSAT 178 (1020)
..++++|||+||. ++......++|.+-.-.++.-+|+.|..
T Consensus 107 ~~~kV~iI~~ae~--m~~~AaNaLLKtLEEPp~~t~fiL~t~~ 147 (319)
T PRK06090 107 NGYRLFVIEPADA--MNESASNALLKTLEEPAPNCLFLLVTHN 147 (319)
T ss_pred CCceEEEecchhh--hCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 3799999999993 3344455667766555555666665544
No 498
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=79.32 E-value=0.47 Score=50.53 Aligned_cols=40 Identities=20% Similarity=0.332 Sum_probs=25.3
Q ss_pred ceeEEEEeecccccccccceeehhhhhHhhcc-CCeEEEEee
Q 001729 136 LKYKVIILDEVHERSVESDLVLVCVKQLLLKK-NDLRVVLMS 176 (1020)
Q Consensus 136 ~~~s~IIIDEaHER~l~~d~ll~~lk~ll~~~-~~lkiIlmS 176 (1020)
++.+++|+||-+ -.++.|-+..+-+-+...+ ++.-+++.|
T Consensus 161 lePkl~ILDE~D-SGLDIdalk~V~~~i~~lr~~~~~~liIT 201 (251)
T COG0396 161 LEPKLAILDEPD-SGLDIDALKIVAEGINALREEGRGVLIIT 201 (251)
T ss_pred cCCCEEEecCCC-cCccHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 378999999999 6788777665554444333 333444443
No 499
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=79.31 E-value=2.7 Score=51.51 Aligned_cols=65 Identities=14% Similarity=0.277 Sum_probs=48.5
Q ss_pred CcchhhhHHHHHHHHhhc--cEEEEecCCCCCCcCChhhhh---hhcCCccccccCCceehhhhHH-HHHh
Q 001729 25 SLPVMSLREKIVEKVLEN--RVTLIVGETGCGKSSQVPQFL---LAENMEPILCTQPRRFAVVAVA-KMVA 89 (1020)
Q Consensus 25 ~LPi~~~Q~eil~~i~~~--~~vII~apTGSGKTt~ip~~l---le~~~~~IivtqPrrlaa~sva-~rva 89 (1020)
..-.+|||.++++++... +.|++++++-+|||..+..++ ++.....+++++|+..+|.... .++.
T Consensus 14 ~~~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~~~l~v~Pt~~~a~~~~~~rl~ 84 (557)
T PF05876_consen 14 RTDRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDPGPMLYVQPTDDAAKDFSKERLD 84 (557)
T ss_pred CCCCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCCCCEEEEEEcHHHHHHHHHHHHH
Confidence 445788999999999765 589999999999997443332 3444568999999998877664 3443
No 500
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.26 E-value=3.2 Score=49.70 Aligned_cols=79 Identities=24% Similarity=0.226 Sum_probs=45.1
Q ss_pred ccccceEEeeechhhhHHHHHhc---cc---cceeE-EEEeeccccccccc-----c------eeehhhhhHhhccCCeE
Q 001729 110 LSERSKIVFKTAGVLLDEMRDRG---LN---ALKYK-VIILDEVHERSVES-----D------LVLVCVKQLLLKKNDLR 171 (1020)
Q Consensus 110 ~~~~t~Iiv~Tpg~Ll~~l~~~~---l~---l~~~s-~IIIDEaHER~l~~-----d------~ll~~lk~ll~~~~~lk 171 (1020)
....-.|.|+|.+.|...+.... +. +.+-. +.+=||||+-...+ | -+...++..+..+++--
T Consensus 78 hnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nkd~~ 157 (812)
T COG3421 78 HNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNKDNL 157 (812)
T ss_pred cCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCCCce
Confidence 34567899999998876654321 11 11333 45679999522211 1 11223444455667778
Q ss_pred EEEeecccc--hhhhhHHH
Q 001729 172 VVLMSATAD--ITKYRDYF 188 (1020)
Q Consensus 172 iIlmSATld--~~~~~~~f 188 (1020)
++..|||.+ .+....|-
T Consensus 158 ~lef~at~~k~k~v~~ky~ 176 (812)
T COG3421 158 LLEFSATIPKEKSVEDKYE 176 (812)
T ss_pred eehhhhcCCccccHHHHhc
Confidence 888999974 33344443
Done!