Query 001729
Match_columns 1020
No_of_seqs 600 out of 3944
Neff 7.3
Searched_HMMs 29240
Date Tue Mar 26 16:11:46 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001729.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1027-1031//hhsearch_pdb/001729hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xau_A PRE-mRNA-splicing facto 1.0 1 1 717.8 22.6 599 23-716 90-751 (773)
2 2va8_A SSO2462, SKI2-type heli 1.0 1 1 446.1 15.2 462 27-531 30-552 (715)
3 2p6r_A Afuhel308 helicase; pro 1.0 1 1 432.8 11.8 446 27-528 25-529 (702)
4 2zj8_A DNA helicase, putative 1.0 1 1 415.5 11.0 446 27-531 23-537 (720)
5 4f92_B U5 small nuclear ribonu 1.0 1 1 338.0 16.8 467 18-528 66-632 (1724)
6 4f92_B U5 small nuclear ribonu 1.0 1 1 334.7 7.6 441 28-517 927-1452(1724)
7 3o8b_A HCV NS3 protease/helica 1.0 1 1 329.2 6.6 301 23-404 213-517 (666)
8 3l9o_A ATP-dependent RNA helic 1.0 1 1 326.0 22.1 358 23-402 180-598 (1108)
9 4a4z_A Antiviral helicase SKI2 1.0 1 1 312.2 22.3 353 25-400 37-491 (997)
10 3eiq_A Eukaryotic initiation f 1.0 1 1 300.3 16.2 316 26-404 61-390 (414)
No 1
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=1.00 E-value=1 Score=717.85 Aligned_cols=599 Identities=28% Similarity=0.404 Sum_probs=497.5
Q ss_pred CCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHCCC-----CCCCCCCCCEEHHHHHHHHHHHCCCCCCC
Q ss_conf 6675213258999999861418899637888976870053663088-----52212477501125678987603465567
Q 001729 23 FSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM-----EPILCTQPRRFAVVAVAKMVAKGRNCELG 97 (1020)
Q Consensus 23 r~~LPi~~~Q~~il~~i~~~~~vII~g~TGSGKTtqip~~lle~~~-----~~IivtqPrriaa~s~a~rva~e~~~~lg 97 (1020)
+..+|++..+..+..++..+++++|+||||||||+++|+++++... ..+++++|+|.++.+++++++.+++..++
T Consensus 90 r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~ 169 (773)
T 2xau_A 90 RRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLG 169 (773)
T ss_dssp HTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBT
T ss_pred HHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCHH
T ss_conf 66189599999999999679839998899889999999999974001589965886185699999999999998488453
Q ss_pred CCCCEECCCCCCCCCCCEEEEEECHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCEEEHHHHHHHHCCCCEEEEEEEC
Q ss_conf 63202013343456554178652103269898712243013899950111123345632021356764169847997640
Q 001729 98 GEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSA 177 (1020)
Q Consensus 98 ~~VGy~v~~~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~r~~lkiIllSA 177 (1020)
..+||.++++......++|+++|+|++++.+..+. .+.++++|||||+|+|+++.|.++.+++.+...+++.++|+|||
T Consensus 170 ~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~-~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SA 248 (773)
T 2xau_A 170 EEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDH-DLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSA 248 (773)
T ss_dssp TTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHST-TCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred HEECCEECCCCCCCCCCCEEEECHHHHHHHHHHCC-CCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 25662224454558898779989999999974284-43577889954701036455899999999987487862999943
Q ss_pred CCCHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 44223415877422975137999802898102577765689998887247756431111133378999756555458468
Q 001729 178 TADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEV 257 (1020)
Q Consensus 178 Tld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 257 (1020)
|++.+.+.+||+. .+++.+++. .++++++|+ .... ...
T Consensus 249 T~~~~~l~~~~~~------~~vi~v~gr----~~pv~~~~~-----------------------~~~~---------~~~ 286 (773)
T 2xau_A 249 TLDAEKFQRYFND------APLLAVPGR----TYPVELYYT-----------------------PEFQ---------RDY 286 (773)
T ss_dssp CSCCHHHHHHTTS------CCEEECCCC----CCCEEEECC-----------------------SSCC---------SCH
T ss_pred CCCHHHHHHHHCC------CCCCCCCCC----CCCEEEEEE-----------------------CCCC---------HHH
T ss_conf 3568999998468------985453686----555388980-----------------------6882---------459
Q ss_pred HHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHCCC---------CCCCEEEEEEECCCCHHHHHHHHHHHH---
Q ss_conf 99898864321258864333178971005659976363034---------546148998404655699999978530---
Q 001729 258 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKP---------LSSFFKVHILHSSVDTEQALMAMKICK--- 325 (1020)
Q Consensus 258 ~~li~~li~~i~~~~~~~~g~iLVFl~s~~~ie~l~~~L~~---------~~~~~~v~~lHs~l~~~er~~i~~~f~--- 325 (1020)
...+...+..++...+ .+++|||++++.+++.+++.|.. ...++.+.++||+|+.++|..+++.|+
T Consensus 287 ~~~~l~~l~~~~~~~~--~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~ 364 (773)
T 2xau_A 287 LDSAIRTVLQIHATEE--AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESH 364 (773)
T ss_dssp HHHHHHHHHHHHHHSC--SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCS
T ss_pred HHHHHHHHHHHHHHCC--CCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 9999999999997268--99989989989999999999999887631345679759998078999999999985264345
Q ss_pred --CCC-EEEEEECCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCEEEEEEEHHHHHHHCCCCCCCCCCEEEEEECHHH
Q ss_conf --022-18898203444311360567760653115554045555420268750217887329987655770688531000
Q 001729 326 --SHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSF 402 (1020)
Q Consensus 326 --~~r-kVIVATniaEtGItIP~V~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~c~rLys~~~ 402 (1020)
.|. +||||||++|+|||||+|++|||+|+.|.+.||+..+++.+.+.|+|++++.||+|||||..+|.||+||++.+
T Consensus 365 ~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~~G~~~~l~~~~~ 444 (773)
T 2xau_A 365 NGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEA 444 (773)
T ss_dssp SSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSSSSEEEEESSCHHH
T ss_pred CCCCCEEEEEECCHHHHCCCCCCEEEEEECCCCCCEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCEEEEEECHHH
T ss_conf 78883499996767984767687379994797221222566683203300179999986534447899987999963788
Q ss_pred C-CCCCCCCCCCEEHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 0-333436883100145867888765067565578367876404999930056698888987552103999766764100
Q 001729 403 F-GTLEDHECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYG 481 (1020)
Q Consensus 403 ~-~~l~~~~~PEIlr~~L~~~iL~l~~~~~~~l~~~~~~l~~~ldpP~~~~i~~al~~L~~lgald~~~~~G~~~lT~lG 481 (1020)
+ +.+.++..|||++.+|..++|+++.++ +++... ++|++||+.+++..|++.|..+||||++ | .+|++|
T Consensus 445 ~~~~l~~~~~pEi~r~~L~~~~L~l~~~g---i~~~~~--f~~~~~p~~~~i~~a~~~L~~lgald~~---~--~lT~lG 514 (773)
T 2xau_A 445 FQKELIEQSYPEILRSNLSSTVLELKKLG---IDDLVH--FDFMDPPAPETMMRALEELNYLACLDDE---G--NLTPLG 514 (773)
T ss_dssp HHHTSCSSCCCGGGGSCCHHHHHHHHHTT---CCCGGG--CCCSSCCCHHHHHHHHHHHHHTTSBCTT---S--CBCHHH
T ss_pred HCCCCCCCCCCCCCCCCHHHHHHHHHHCC---CCCHHH--CCCCCCCCHHHHHHHHHHHHHCCCCCCC---C--CCCHHH
T ss_conf 40123016897533475899999999849---997232--4355798599999999999976876557---8--868305
Q ss_pred HHCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCEECCCCCCEEEECCCEEEEECC
Q ss_conf 00222213331048999835410234354332121577764237788620000001210067997025404411433100
Q 001729 482 RLLASFSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPFGDDALFAEYTGCYFGGDGNTRLLTGRKEMVIMGN 561 (1020)
Q Consensus 482 ~~la~lPldp~~a~~ll~~~~~gc~~e~l~Iaa~Ls~~~~~~~~P~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~ 561 (1020)
+.|+.||+||++++||+.+..++|++++++|+|||++++ +|++|.+++++++..+..|.+++|| |++.
T Consensus 515 ~~~a~~pl~p~~~~~l~~~~~~~c~~~~l~i~a~ls~~~-~f~~~~~~~~~~~~~~~~f~~~~~D-----------~~~~ 582 (773)
T 2xau_A 515 RLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSVPN-VFIRPTKDKKRADDAKNIFAHPDGD-----------HITL 582 (773)
T ss_dssp HHHTTSSSCHHHHHHHHHGGGGTCHHHHHHHHHHHTSCC-CBCCCTTCHHHHHHHHHTTCCTTBH-----------HHHH
T ss_pred HHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHHHCCCCCCC-----------HHHH
T ss_conf 642433688899999986212474168999999603688-5518747899999999850688985-----------9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 246888799721133379998755113210000231134-5634456799986556578999999986420265543345
Q 001729 562 LCAFQFWQHVFKDKQRLDHLQQVLKFDETKVTASLLPKI-EEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKFLGTS 640 (1020)
Q Consensus 562 l~af~~W~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~wC~~~fL~~~~l~~~~~i~~ql~~~~~~~~~~~~~~~ 640 (1020)
+|+|+.|..... .+. ...||++|||++++|++|.+++.||.+++.++++...+..
T Consensus 583 l~~~~~~~~~~~------------------------~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~~~~~~~~~~~~~ 638 (773)
T 2xau_A 583 LNVYHAFKSDEA------------------------YEYGIHKWCRDHYLNYRSLSAADNIRSQLERLMNRYNLELNTTD 638 (773)
T ss_dssp HHHHHHHTSHHH------------------------HHHCHHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTTCCCCCCC
T ss_pred HHHHHHHHHHCC------------------------CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 999999987022------------------------21068999998388999999999999999999874288757777
Q ss_pred CCCC------------------------CC-CCCCCCCCEEEE------EECCCCCCCCCCCCCCCCCCCCCCCCEEE--
Q ss_conf 8999------------------------76-687655401683------10899998974456788899811236044--
Q 001729 641 NGLP------------------------TY-YDPYEFEHTCLL------NCDPPRDMDPLAADNEHLGPSFEAKKCVA-- 687 (1020)
Q Consensus 641 ~~~~------------------------~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-- 687 (1020)
...+ .. |........+.+ ...++|++|++++.|+ ++|+|.|+.
T Consensus 639 ~~~~~~~~~i~~~l~~g~~~~~a~~~~~~~~y~~~~~~~~~~ihp~s~l~~~~~~~v~~e~~~t~----~~~~~~~~~i~ 714 (773)
T 2xau_A 639 YESPKYFDNIRKALASGFFMQVAKKRSGAKGYITVKDNQDVLIHPSTVLGHDAEWVIYNEFVLTS----KNYIRTVTSVR 714 (773)
T ss_dssp TTSTTHHHHHHHHHHHHHTTSEEEECCC--CEEETTTCCEEEECTTCCCCTTCSEEEEEEEEESS----SEEEEEEEECC
T ss_pred CCCHHHHHHHHHHHHHHCHHHHEEECCCCCCCEEEECCCEEEECCCCCCCCCCCEEEEEEEECCC----HHHEEECCCCC
T ss_conf 77320699999999986737551434678741573379779988986467998989999862024----42424416079
Q ss_pred --------ECCCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf --------21218875340799999999999987313
Q 001729 688 --------VPFVAPNQFQSNNVAEKLASIIKEIRVQY 716 (1020)
Q Consensus 688 --------~py~s~~~f~~~e~k~~LekiiKe~r~~~ 716 (1020)
|+||...+|++++.++.++++.++.....
T Consensus 715 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 751 (773)
T 2xau_A 715 PEWLIEIAPAYYDLSNFQKGDVKLSLERIKEKVDRLN 751 (773)
T ss_dssp HHHHHHHCTTTSCGGGCCSSHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9999998787622041783558999999999753111
No 2
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=446.09 Aligned_cols=462 Identities=15% Similarity=0.073 Sum_probs=322.2
Q ss_pred CHHHHHHHHHHH-HHHCCEEEEECCCCCCCCCCHHHHHHHCC---CCCCCCCCCCEEHHHHHHHHHH--HCCCCCCCCCC
Q ss_conf 213258999999-86141889963788897687005366308---8522124775011256789876--03465567632
Q 001729 27 PVMSLREKIVEK-VLENRVTLIVGETGCGKSSQVPQFLLAEN---MEPILCTQPRRFAVVAVAKMVA--KGRNCELGGEV 100 (1020)
Q Consensus 27 Pi~~~Q~~il~~-i~~~~~vII~g~TGSGKTtqip~~lle~~---~~~IivtqPrriaa~s~a~rva--~e~~~~lg~~V 100 (1020)
.++++|.++++. +.++++++++||||||||+++++++++.. ..++++++|++.++.++++++. ...+..++..+
T Consensus 30 ~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~~~~~~~g~~v~~~~ 109 (715)
T 2va8_A 30 KLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKDWELIGFKVAMTS 109 (715)
T ss_dssp BCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHHGGGGGGTCCEEECC
T ss_pred CCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 79999999999986489948998489875999999999999997798499990859999999999987652798899984
Q ss_pred CEECCCCCCCCCCCEEEEEECHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCEEEHHHHHHHHCCCCEEEEEEECCC-
Q ss_conf 0201334345655417865210326989871224301389995011112334563202135676416984799764044-
Q 001729 101 GYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATA- 179 (1020)
Q Consensus 101 Gy~v~~~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~r~~lkiIllSATl- 179 (1020)
|+..+.++.. ..++|+|+|||++.+.+..+...+.++++|||||+|+.. + +.....++.++.+.+++++|+||||+
T Consensus 110 G~~~~~~~~~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~-~-~~~~~~l~~i~~~~~~~~ii~lSATl~ 186 (715)
T 2va8_A 110 GDYDTDDAWL-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLN-D-PERGPVVESVTIRAKRRNLLALSATIS 186 (715)
T ss_dssp SCSSSCCGGG-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGG-C-TTTHHHHHHHHHHHHTSEEEEEESCCT
T ss_pred CCCCCCHHHC-CCCCEEEECHHHHHHHHHCCHHHHHCCCEEEEECHHHCC-C-CCCCHHHHHHHHHCCCCCEEEECCCCC
T ss_conf 8977762013-799999985899999996785576436989995355527-8-662229999998653672899717879
Q ss_pred CHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 22341587742297513799980289810257776568999888724775643111113337899975655545846899
Q 001729 180 DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHK 259 (1020)
Q Consensus 180 d~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 259 (1020)
+++.+.+||+. +++..+.+ .+++...+.. . ..........|........ ........
T Consensus 187 n~~~~~~~l~~-------~~~~~~~r----~~~l~~~~~~------~---~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 243 (715)
T 2va8_A 187 NYKQIAKWLGA-------EPVATNWR----PVPLIEGVIY------P---ERKKKEYNVIFKDNTTKKV---HGDDAIIA 243 (715)
T ss_dssp THHHHHHHHTC-------EEEECCCC----SSCEEEEEEE------E---CSSTTEEEEEETTSCEEEE---ESSSHHHH
T ss_pred CHHHHHHHHCC-------CCCCCCCC----CCCCEEEEEE------C---CCCCCCEEEECCCCHHHHC---CCCHHHHH
T ss_conf 99999998499-------74579999----8874688883------5---8766540465276044321---34438999
Q ss_pred HHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHCCCCCCC----------------------------------EEE
Q ss_conf 8988643212588643331789710056599763630345461----------------------------------489
Q 001729 260 LIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSF----------------------------------FKV 305 (1020)
Q Consensus 260 li~~li~~i~~~~~~~~g~iLVFl~s~~~ie~l~~~L~~~~~~----------------------------------~~v 305 (1020)
.+.+.+ . .++++|||++++++++.++..|...... ..+
T Consensus 244 ~~~~~~----~----~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v 315 (715)
T 2va8_A 244 YTLDSL----S----KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGV 315 (715)
T ss_dssp HHHHHH----T----TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTE
T ss_pred HHHHHH----H----CCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCE
T ss_conf 999998----6----69977999798899999999999987654288677899999999866345532299999996687
Q ss_pred EEEECCCCHHHHHHHHHHHHCCC-EEEEEECCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCEEEEEEEHHHHHHHCC
Q ss_conf 98404655699999978530022-18898203444311360567760653115554045555420268750217887329
Q 001729 306 HILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRG 384 (1020)
Q Consensus 306 ~~lHs~l~~~er~~i~~~f~~~r-kVIVATniaEtGItIP~V~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkas~~QR~G 384 (1020)
.++||+|+.++|..+++.|+.|. +|||||+++|+|||+|++++||++ ..+||+..+.. ..|+|.+++.||+|
T Consensus 316 ~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~----~~~~d~~~~~~---~~~~s~~~~~Qr~G 388 (715)
T 2va8_A 316 AYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGD----IYRFNKKIAGY---YDEIPIMEYKQMSG 388 (715)
T ss_dssp EEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECC----C-----------------CHHHHHHHHT
T ss_pred EEECCCCCHHHHHHHHHHHHCCCCEEEEECHHHHCCCCCCCEEEEEEC----CEECCCCCCCC---CCCCCHHHHHHHHH
T ss_conf 887899999999999999986998599978087661688854999918----75644667778---77599999999842
Q ss_pred CCCCCC---CCEEEEEECHHH-CCCCC---CCCCCCEEHHHHHH------HHHHHHCCCC-CCCCCHHHHHH-HHCC-CC
Q ss_conf 987655---770688531000-03334---36883100145867------8887650675-65578367876-4049-99
Q 001729 385 RTGRTC---DGQVYRLVTKSF-FGTLE---DHECPAILRLSLRL------QVLLICCAES-KAISDPKVLLQ-KALD-PP 448 (1020)
Q Consensus 385 RAGR~~---~G~c~rLys~~~-~~~l~---~~~~PEIlr~~L~~------~iL~l~~~~~-~~l~~~~~~l~-~~ld-pP 448 (1020)
||||.+ +|.||+++++.. +..+. ....||+++++|.. .++.+...+. ....+...++. .|+. +|
T Consensus 389 RaGR~g~~~~G~~~~l~~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~~~~~~~~ 468 (715)
T 2va8_A 389 RAGRPGFDQIGESIVVVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENFAYESLLAKQL 468 (715)
T ss_dssp TBCCTTTCSCEEEEEECSCGGGHHHHHHHTTSSCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHHHHHHTTSSSCHHH
T ss_pred HCCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 42799888875699996780679999999970899873533786667999999998515668899999999850787642
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCCEEEEEEEECCC---HHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 9300566988889875521039997667641000022221333104899983541---0234354332121577764237
Q 001729 449 YPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGEI---GMLREGILLGILMDTQPLPILH 525 (1020)
Q Consensus 449 ~~~~i~~al~~L~~lgald~~~~~G~~~lT~lG~~la~lPldp~~a~~ll~~~~~---gc~~e~l~Iaa~Ls~~~~~~~~ 525 (1020)
+...+..+++.|.++|+|+.++ +...+|++|+.|+.+|++|+.+++++.+... .|..+++.|+|+.+..+.++.+
T Consensus 469 ~~~~~~~al~~L~~~g~i~~~~--~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~~~~r 546 (715)
T 2va8_A 469 VDVYFDRAIRWLLEHSFIKEEG--NTFALTNFGKRVADLYINPFTADIIRKGLEGHKASCELAYLHLLAFTPDGPLVSVG 546 (715)
T ss_dssp HHHHHHHHHHHHHHTTSEEECS--SEEEECHHHHHHHHHTCCHHHHHHHHHHHHHSCCCCHHHHHHHHHHSTTSCCCCCC
T ss_pred CHHHHHHHHHHHHHCCCEEECC--CEEEECHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCC
T ss_conf 6388999999998884976669--86866768999999748986799999986542578789999995268433457648
Q ss_pred CCCCCC
Q ss_conf 788620
Q 001729 526 PFGDDA 531 (1020)
Q Consensus 526 P~~~~~ 531 (1020)
|.+.+.
T Consensus 547 ~~e~~~ 552 (715)
T 2va8_A 547 RNEEEE 552 (715)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 678999
No 3
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=1.00 E-value=1 Score=432.77 Aligned_cols=446 Identities=17% Similarity=0.165 Sum_probs=318.9
Q ss_pred CHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHCC--CCCCCCCCCCEEHHHHHHHHHHH--CCCCCCCCCCCE
Q ss_conf 21325899999986141889963788897687005366308--85221247750112567898760--346556763202
Q 001729 27 PVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN--MEPILCTQPRRFAVVAVAKMVAK--GRNCELGGEVGY 102 (1020)
Q Consensus 27 Pi~~~Q~~il~~i~~~~~vII~g~TGSGKTtqip~~lle~~--~~~IivtqPrriaa~s~a~rva~--e~~~~lg~~VGy 102 (1020)
.++++|.++++.+.++++++++||||||||+++++++++.. ..++++++|++.++.++++++.. ..+..++..+|+
T Consensus 25 ~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~ 104 (702)
T 2p6r_A 25 ELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGD 104 (702)
T ss_dssp CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSS
T ss_pred CCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 89999999999983899689986896179999999999999868959999370999999999999777049889998388
Q ss_pred ECCCCCCCCCCCEEEEEECHHHHHHHHHHCCCCCEEEEEEEECCCC-----CCCCCCEEEHHHHHHHHCCCCEEEEEEEC
Q ss_conf 0133434565541786521032698987122430138999501111-----23345632021356764169847997640
Q 001729 103 HIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHE-----RSVESDLVLVCVKQLLLKKNDLRVVLMSA 177 (1020)
Q Consensus 103 ~v~~~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHE-----R~~~~d~ll~~lk~ll~~r~~lkiIllSA 177 (1020)
..+.++.. ..++|+|+|||++.+.+..+...+.++++|||||+|+ |+...+.++..++ ..++++++|+|||
T Consensus 105 ~~~~~~~~-~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~---~~~~~~~ii~lSA 180 (702)
T 2p6r_A 105 YESRDEHL-GDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMR---RMNKALRVIGLSA 180 (702)
T ss_dssp CBCCSSCS-TTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHH---HHCTTCEEEEEEC
T ss_pred CCCCHHHC-CCCCEEEECHHHHHHHHHCCHHHHHHCCEEEEEEEEECCCCCCCCHHHHHHHHHH---HCCCCCEEEEECC
T ss_conf 77664352-6999999898999999975755776259898850255478776527999999998---4386765999788
Q ss_pred CCC-HHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 442-2341587742297513799980289810257776568999888724775643111113337899975655545846
Q 001729 178 TAD-ITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPE 256 (1020)
Q Consensus 178 Tld-~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 256 (1020)
|++ .+.+.+|++. +++..+.++ +++...+. .... ..+...... ..... .
T Consensus 181 Tl~n~~~~~~~l~~-------~~~~~~~r~----~~l~~~~~------------~~~~---~~~~~~~~~--~~~~~--~ 230 (702)
T 2p6r_A 181 TAPNVTEIAEWLDA-------DYYVSDWRP----VPLVEGVL------------CEGT---LELFDGAFS--TSRRV--K 230 (702)
T ss_dssp CCTTHHHHHHHTTC-------EEEECCCCS----SCEEEEEE------------CSSE---EEEEETTEE--EEEEC--C
T ss_pred CCCCHHHHHHHHCC-------CCCCCCCCC----CCCEEEEE------------ECCE---EECCCCCHH--HHHHH--H
T ss_conf 76899999998489-------723688877----66468886------------1782---310576301--44454--6
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHCCCCCC----------------------------CEEEEEE
Q ss_conf 899898864321258864333178971005659976363034546----------------------------1489984
Q 001729 257 VHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSS----------------------------FFKVHIL 308 (1020)
Q Consensus 257 ~~~li~~li~~i~~~~~~~~g~iLVFl~s~~~ie~l~~~L~~~~~----------------------------~~~v~~l 308 (1020)
....+.+.+ . .++++|||++++++++.++..|..... +..+.++
T Consensus 231 ~~~~~~~~~----~----~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~ 302 (702)
T 2p6r_A 231 FEELVEECV----A----ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFH 302 (702)
T ss_dssp HHHHHHHHH----H----TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHH----H----CCCCEEEECCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHCCEEEE
T ss_conf 999999999----6----69978998388789999999999998764695889999986245532199999984692886
Q ss_pred ECCCCHHHHHHHHHHHHCCC-EEEEEECCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCEEEEEEEHHHHHHHCCCCC
Q ss_conf 04655699999978530022-18898203444311360567760653115554045555420268750217887329987
Q 001729 309 HSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTG 387 (1020)
Q Consensus 309 Hs~l~~~er~~i~~~f~~~r-kVIVATniaEtGItIP~V~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAG 387 (1020)
||+|+.++|..+++.|+.|. +|||||+++++|||+|++++||++ ..+|| +. ..|+|.+++.||+||||
T Consensus 303 h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~----~~~yd---~~----~~~~s~~~~~Qr~GRaG 371 (702)
T 2p6r_A 303 HAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRS----LYRFD---GY----SKRIKVSEYKQMAGRAG 371 (702)
T ss_dssp CTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECC----SEEES---SS----EEECCHHHHHHHHTTBS
T ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEEEEECC----CEEEC---CC----CCCCCHHHHHHHHHHCC
T ss_conf 699999999999999987998499978388665788733999847----62307---87----77589999999843327
Q ss_pred CCC---CCEEEEEECHHHCCCCC---CCCCCCEEHHHHHH------HHHHHHCCCC-CCCCCHHHHHH-HH----CCCCC
Q ss_conf 655---77068853100003334---36883100145867------8887650675-65578367876-40----49999
Q 001729 388 RTC---DGQVYRLVTKSFFGTLE---DHECPAILRLSLRL------QVLLICCAES-KAISDPKVLLQ-KA----LDPPY 449 (1020)
Q Consensus 388 R~~---~G~c~rLys~~~~~~l~---~~~~PEIlr~~L~~------~iL~l~~~~~-~~l~~~~~~l~-~~----ldpP~ 449 (1020)
|.+ +|.||+++++..++.+. ....||+.+++|.. .++.+...+. ....+...++. .| .++|.
T Consensus 372 R~g~~~~G~~~~l~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~t~~~~~~~~~~ 451 (702)
T 2p6r_A 372 RPGMDERGEAIIIVGKRDREIAVKRYIFGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEISL 451 (702)
T ss_dssp CTTTCSCEEEEEECCGGGHHHHHHTTTSSCCCCCCCCCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHCCCC
T ss_pred CCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999873699995573189999999608998846516860558999999997177888999999998506777501789
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCCEEEEEEEECCC--HHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 300566988889875521039997667641000022221333104899983541--023435433212157776423778
Q 001729 450 PEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGEI--GMLREGILLGILMDTQPLPILHPF 527 (1020)
Q Consensus 450 ~~~i~~al~~L~~lgald~~~~~G~~~lT~lG~~la~lPldp~~a~~ll~~~~~--gc~~e~l~Iaa~Ls~~~~~~~~P~ 527 (1020)
.+.+..+++.|.++|+|+.+ +...+|++|+.|+.+|++|+.+++++.+... .|..+++.|.++.+..+..+.++.
T Consensus 452 ~~~~~~al~~L~~~g~i~~~---~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~i~~r~~ 528 (702)
T 2p6r_A 452 SYELERVVRQLENWGMVVEA---AHLAPTKLGSLVSRLYIDPLTGFIFHDVLSRMELSDIGALHLICRTPDMERLTVRKT 528 (702)
T ss_dssp HHHHHHHHHHHHHTTSEEES---SSEEECHHHHHHHHTTCCHHHHHHHHHHTTTCCCCHHHHHHHHHHSTTSCCCCCCTT
T ss_pred HHHHHHHHHHHHHCCCEEEC---CEECCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 99999999999988594289---906648699999998578989999999743046878999999537744445777876
Q ss_pred C
Q ss_conf 8
Q 001729 528 G 528 (1020)
Q Consensus 528 ~ 528 (1020)
+
T Consensus 529 e 529 (702)
T 2p6r_A 529 D 529 (702)
T ss_dssp T
T ss_pred H
T ss_conf 5
No 4
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=1.00 E-value=1 Score=415.46 Aligned_cols=446 Identities=13% Similarity=0.109 Sum_probs=303.9
Q ss_pred CHHHHHHHHHHH-HHHCCEEEEECCCCCCCCCCHHHHHHHCC---CCCCCCCCCCEEHHHHHHHHHHH--CCCCCCCCCC
Q ss_conf 213258999999-86141889963788897687005366308---85221247750112567898760--3465567632
Q 001729 27 PVMSLREKIVEK-VLENRVTLIVGETGCGKSSQVPQFLLAEN---MEPILCTQPRRFAVVAVAKMVAK--GRNCELGGEV 100 (1020)
Q Consensus 27 Pi~~~Q~~il~~-i~~~~~vII~g~TGSGKTtqip~~lle~~---~~~IivtqPrriaa~s~a~rva~--e~~~~lg~~V 100 (1020)
.++++|.++++. +.++++++++||||||||+++++++++.. ..++++++|++.++.++++++.. ..+..++..+
T Consensus 23 ~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~~ 102 (720)
T 2zj8_A 23 SFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMAT 102 (720)
T ss_dssp BCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEEC
T ss_pred CCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 89999999999985579948998699637999999999999986799899985969999999999998873597799963
Q ss_pred CEECCCCCCCCCCCEEEEEECHHHHHHHHHHCCCCCEEEEEEEECCC-----CCCCCCCEEEHHHHHHHHCCCCEEEEEE
Q ss_conf 02013343456554178652103269898712243013899950111-----1233456320213567641698479976
Q 001729 101 GYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVH-----ERSVESDLVLVCVKQLLLKKNDLRVVLM 175 (1020)
Q Consensus 101 Gy~v~~~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaH-----ER~~~~d~ll~~lk~ll~~r~~lkiIll 175 (1020)
|.. .........++|+|+|||++.+.+..+...+.++++|||||+| +|+...+.++..++ .+.++|+|
T Consensus 103 G~~-~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~------~~~~ii~l 175 (720)
T 2zj8_A 103 GDY-DSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILAHML------GKAQIIGL 175 (720)
T ss_dssp SCS-SCCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHB------TTBEEEEE
T ss_pred CCC-CCCCCCCCCCCEEEECHHHHHHHHHCCHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHH------CCCEEEEE
T ss_conf 897-76412147999999888999999975714665279899989855678764479999999864------07769997
Q ss_pred ECCC-CHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4044-223415877422975137999802898102577765689998887247756431111133378999756555458
Q 001729 176 SATA-DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIK 254 (1020)
Q Consensus 176 SATl-d~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 254 (1020)
|||+ +++.+.+|++. +.+..+.++ .+....+. ... ...+..... ...
T Consensus 176 SATl~n~~~~~~~l~~-------~~~~~~~rp----~~l~~~~~------------~~~---~~~~~~~~~------~~~ 223 (720)
T 2zj8_A 176 SATIGNPEELAEWLNA-------ELIVSDWRP----VKLRRGVF------------YQG---FVTWEDGSI------DRF 223 (720)
T ss_dssp ECCCSCHHHHHHHTTE-------EEEECCCCS----SEEEEEEE------------ETT---EEEETTSCE------EEC
T ss_pred CCCCCCHHHHHHHHCC-------CCCCCCCCC----CCCEEEEE------------ECC---EEECCCCCH------HHH
T ss_conf 5886899999998298-------603789888----76368897------------578---131165320------001
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHCCCCCC-------------------------------CE
Q ss_conf 46899898864321258864333178971005659976363034546-------------------------------14
Q 001729 255 PEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSS-------------------------------FF 303 (1020)
Q Consensus 255 ~~~~~li~~li~~i~~~~~~~~g~iLVFl~s~~~ie~l~~~L~~~~~-------------------------------~~ 303 (1020)
......+.+.+ . .++++|||++++++++.++..|..... ..
T Consensus 224 ~~~~~~~~~~~----~----~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~ 295 (720)
T 2zj8_A 224 SSWEELVYDAI----R----KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRG 295 (720)
T ss_dssp SSTTHHHHHHH----H----TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH----H----CCCCEEEEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHC
T ss_conf 69999999998----6----799889996587999999999999998745906689999999987516650889999851
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCEEEEEEEHHHHHHH
Q ss_conf 8998404655699999978530022-188982034443113605677606531155540455554202687502178873
Q 001729 304 KVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQR 382 (1020)
Q Consensus 304 ~v~~lHs~l~~~er~~i~~~f~~~r-kVIVATniaEtGItIP~V~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkas~~QR 382 (1020)
.+.++||+|+.++|..+++.|+.|. +|||||+++++|||+|++++||+.+ .+|| .. ...|+|.+++.||
T Consensus 296 ~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~----~~yd-~~-----g~~~~s~~~~~Qr 365 (720)
T 2zj8_A 296 GVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDI----WRYS-DF-----GMERIPIIEVHQM 365 (720)
T ss_dssp TEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCS----EECC-SS-----SCEECCHHHHHHH
T ss_pred CEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEEEEECCC----EEEC-CC-----CCCCCCHHHHHHH
T ss_conf 946324899999999999999779975999881866628888528998487----2406-88-----8760899999998
Q ss_pred CCCCCCCC---CCEEEEEECHHHCC----CCCCCCCCCEEHH-----HHHHHHHHHHCCCC-CCCCCHHHHH-HHHC---
Q ss_conf 29987655---77068853100003----3343688310014-----58678887650675-6557836787-6404---
Q 001729 383 RGRTGRTC---DGQVYRLVTKSFFG----TLEDHECPAILRL-----SLRLQVLLICCAES-KAISDPKVLL-QKAL--- 445 (1020)
Q Consensus 383 ~GRAGR~~---~G~c~rLys~~~~~----~l~~~~~PEIlr~-----~L~~~iL~l~~~~~-~~l~~~~~~l-~~~l--- 445 (1020)
+|||||.+ +|.||+++++...+ .+.....+++... .|...++.+...+. ....+...++ ..|+
T Consensus 366 ~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~~ 445 (720)
T 2zj8_A 366 LGRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQ 445 (720)
T ss_dssp HTTBCCTTTCSEEEEEEECSSSCHHHHHHHHTTSCCCCCCCCTTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHHH
T ss_pred HHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHH
T ss_conf 75448998888766999966710999999996189987176568604399999999971778899999999982768774
Q ss_pred ---CCCCCCCHHHHHHHHHHHHHHH-HCCCCCCCCCCCCCHHCCCCCCCCCEEEEEEEECCC----HHHHHHHHHHHHCC
Q ss_conf ---9999300566988889875521-039997667641000022221333104899983541----02343543321215
Q 001729 446 ---DPPYPEVVGDALDLLDHKRALQ-KISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGEI----GMLREGILLGILMD 517 (1020)
Q Consensus 446 ---dpP~~~~i~~al~~L~~lgald-~~~~~G~~~lT~lG~~la~lPldp~~a~~ll~~~~~----gc~~e~l~Iaa~Ls 517 (1020)
+++..+.+..+++.|.+.|+|+ .++ +.+.+|++|+.|+.+|++|..+++++.+... +|..+++.|+|+++
T Consensus 446 ~~~~~~~~~~~~~~l~~L~~~~~i~~~~~--~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 523 (720)
T 2zj8_A 446 RKDTYSLEEKIRNILYFLLENEFIEISLE--DKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLISLTP 523 (720)
T ss_dssp CSCCHHHHHHHHHHHHHHHHTTSEEECTT--SCEEECHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHTST
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEECCC--CCEEECHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCC
T ss_conf 36457899999999999998879357789--8275576999999973899999999999876425898889999750585
Q ss_pred CCCCCCCCCCCCCC
Q ss_conf 77764237788620
Q 001729 518 TQPLPILHPFGDDA 531 (1020)
Q Consensus 518 ~~~~~~~~P~~~~~ 531 (1020)
..+..+.+|.+.+.
T Consensus 524 e~~~i~~r~~e~~~ 537 (720)
T 2zj8_A 524 DITPFNYSKREFER 537 (720)
T ss_dssp TCCCCCCCHHHHHH
T ss_pred CCCCCCCCHHHHHH
T ss_conf 32126637778999
No 5
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=1.00 E-value=1 Score=338.05 Aligned_cols=467 Identities=15% Similarity=0.157 Sum_probs=276.0
Q ss_pred CCCCCCCCCC----HHHHHHHHHHHHH-HCCEEEEECCCCCCCCCCHHHHHHHCC-------------CCCCCCCCCCEE
Q ss_conf 8887666752----1325899999986-141889963788897687005366308-------------852212477501
Q 001729 18 FTSPEFSSLP----VMSLREKIVEKVL-ENRVTLIVGETGCGKSSQVPQFLLAEN-------------MEPILCTQPRRF 79 (1020)
Q Consensus 18 ~~~~~r~~LP----i~~~Q~~il~~i~-~~~~vII~g~TGSGKTtqip~~lle~~-------------~~~IivtqPrri 79 (1020)
.|+..|..+| +.++|.++++.+. .+++++|+||||||||......++... ..+++++.|.+.
T Consensus 66 Lp~~~~~~f~g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kA 145 (1724)
T 4f92_B 66 LPKYAQAGFEGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRS 145 (1724)
T ss_dssp SCGGGSTTCTTCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHH
T ss_pred CCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHH
T ss_conf 59988874478999999999999999758993999968814699999999999998623434444579988999899799
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCEECCCC---CCCCCCCEEEEEECHHHHHHHHHHC--CCCCEEEEEEEECCCC----CC
Q ss_conf 1256789876034655676320201334---3456554178652103269898712--2430138999501111----23
Q 001729 80 AVVAVAKMVAKGRNCELGGEVGYHIGHS---KHLSERSKIVFKTAGVLLDEMRDRG--LNALKYKVIILDEVHE----RS 150 (1020)
Q Consensus 80 aa~s~a~rva~e~~~~lg~~VGy~v~~~---~~~~~~t~Iiv~T~g~Ll~~l~~~~--l~l~~~~~IIIDEaHE----R~ 150 (1020)
++.+..+.+...++ .+|..|+...+.. ......++|+++|||++...+.... ..+.++++|||||+|- |+
T Consensus 146 La~e~~~~l~~~~~-~~gi~V~~~tGd~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG 224 (1724)
T 4f92_B 146 LVQEMVGSFGKRLA-TYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRG 224 (1724)
T ss_dssp HHHHHHHHHHHHHT-TTTCCEEECCSSCSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGSTTH
T ss_pred HHHHHHHHHHHHHH-HCCCEEEEEECCCCCCCCCCCCCCEEEECHHHHHHHHCCCCCCHHHCCCCEEEEECCHHCCCCCH
T ss_conf 99999999997775-47988999979988871435899999988799999975885304454758899955544299567
Q ss_pred CCCCEEEHHHHH-HHHCCCCEEEEEEECCC-CHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 345632021356-76416984799764044-2234158774229751379998028981025777656899988872477
Q 001729 151 VESDLVLVCVKQ-LLLKKNDLRVVLMSATA-DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVD 228 (1020)
Q Consensus 151 ~~~d~ll~~lk~-ll~~r~~lkiIllSATl-d~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~ 228 (1020)
...+.++..+++ .....++.|+|+||||+ |.+.+++|++... +..+..+... ..|+.
T Consensus 225 ~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N~~dvA~wL~~~~---~~~~~~~~~~----~RPvp-------------- 283 (1724)
T 4f92_B 225 PVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDP---AKGLFYFDNS----FRPVP-------------- 283 (1724)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCEEEEEECSCTTHHHHHHHTTCCH---HHHEEECCGG----GCSSC--------------
T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCC---CCCEEEECCC----CCCCC--------------
T ss_conf 99999999999999737999809999545699999999867888---8886997999----76673--------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHCCCC---------
Q ss_conf 56431111133378999756555458468998988643212588643331789710056599763630345---------
Q 001729 229 HGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL--------- 299 (1020)
Q Consensus 229 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~li~~li~~i~~~~~~~~g~iLVFl~s~~~ie~l~~~L~~~--------- 299 (1020)
+...+... ... ........+.+.+........ .++++|||++++..++.+++.|...
T Consensus 284 -------L~~~~~~~-----~~~-~~~~~~~~~~~~~~~~v~~~~-~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~ 349 (1724)
T 4f92_B 284 -------LEQTYVGI-----TEK-KAIKRFQIMNEIVYEKIMEHA-GKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGL 349 (1724)
T ss_dssp -------EEEECCEE-----CCC-CHHHHHHHHHHHHHHHHTTCC-SSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTC
T ss_pred -------CEEEEECC-----CCC-CHHHHHHHHHHHHHHHHHHHH-CCCCEEEECCCHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf -------17999656-----875-414566778899999999975-6996899878889999999999998764552122
Q ss_pred --------------------------CCCEEEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCCCCCCCCCCEEEEEEC
Q ss_conf --------------------------46148998404655699999978530022-188982034443113605677606
Q 001729 300 --------------------------SSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDS 352 (1020)
Q Consensus 300 --------------------------~~~~~v~~lHs~l~~~er~~i~~~f~~~r-kVIVATniaEtGItIP~V~~VIDs 352 (1020)
.....|..|||+|+.++|..+++.|+.|. +|||||++++.|||+|.+++||..
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~ 429 (1724)
T 4f92_B 350 FLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKG 429 (1724)
T ss_dssp CSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEEC
T ss_pred HCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHCCCCCCEEEEEC
T ss_conf 13333057888776640244488999864577887599999999999999877997499984266713888870699828
Q ss_pred CCCEEEEEECCCCCCCEEEEEEEHHHHHHHCCCCCCC---CCCEEEEEECHHHCC---CCCCCCCC-C-EEHHHHHHHHH
Q ss_conf 5311555404555542026875021788732998765---577068853100003---33436883-1-00145867888
Q 001729 353 CRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT---CDGQVYRLVTKSFFG---TLEDHECP-A-ILRLSLRLQVL 424 (1020)
Q Consensus 353 G~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~---~~G~c~rLys~~~~~---~l~~~~~P-E-Ilr~~L~~~iL 424 (1020)
...||+..+ ...++|.+++.||+|||||. ..|.++.+.++.+.. .+.....| | -+...+...++
T Consensus 430 ----~~~~~~~~~----~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~ll~~~~pieS~l~~~l~d~L~ 501 (1724)
T 4f92_B 430 ----TQVYSPEKG----RWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLN 501 (1724)
T ss_dssp ----CEEEETTTT----EEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHHTTTCSCCCCCTTTTHHHHHH
T ss_pred ----CEEECCCCC----CCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHHHHCCCCCCHHHCCCCHHHHHH
T ss_conf ----877047678----756389999987640126888887647999835025999999974998510203310788999
Q ss_pred HHHCCC-CCCCCCHHHHHH-------------------------HHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 765067-565578367876-------------------------404999930056698888987552103999766764
Q 001729 425 LICCAE-SKAISDPKVLLQ-------------------------KALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPT 478 (1020)
Q Consensus 425 ~l~~~~-~~~l~~~~~~l~-------------------------~~ldpP~~~~i~~al~~L~~lgald~~~~~G~~~lT 478 (1020)
....++ .....+...++. +.++....+.+..++..|.+.|.+..+...|.+.+|
T Consensus 502 aeI~~g~i~~~~~a~~~l~~T~~~~r~~~~p~~y~~~~~~~~~d~~l~~~~~~~i~~~~~~L~~~~li~~d~~~~~~~~T 581 (1724)
T 4f92_B 502 AEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVT 581 (1724)
T ss_dssp HHHHHTSCCBHHHHHHHHHHSHHHHHHHHCTTTTTCCHHHHHHCTTCHHHHHHHHHHHHHHHHHTTSEEECTTTCBEEEC
T ss_pred HHHHHHHCCCHHHHHHHHHCCHHHHHHHHCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCC
T ss_conf 99987024789999999964378877532746543671001236378999999999999999887990140677864344
Q ss_pred CCCHHCCCCCCCCCEEEEEEEECCCHH-HHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 100002222133310489998354102-34354332121577764237788
Q 001729 479 FYGRLLASFSLSFDASVLVLKFGEIGM-LREGILLGILMDTQPLPILHPFG 528 (1020)
Q Consensus 479 ~lG~~la~lPldp~~a~~ll~~~~~gc-~~e~l~Iaa~Ls~~~~~~~~P~~ 528 (1020)
++|++|+++.+++..++.+.....-.+ ..+++.+.++.+.......+.-+
T Consensus 582 ~lGr~~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~is~s~ef~~i~~R~~E 632 (1724)
T 4f92_B 582 ELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVREEE 632 (1724)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGTTCCCCGGG
T ss_pred HHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHCCCCCCHHH
T ss_conf 487999983689999999986358889999999997577521667707789
No 6
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=1.00 E-value=1 Score=334.70 Aligned_cols=441 Identities=13% Similarity=0.109 Sum_probs=274.0
Q ss_pred HHHHHHHHHHHHH-HCCEEEEECCCCCCCCCCHHHHHHHC----CCCCCCCCCCCEEHHHHHHHHHHHCCCCCCCCCCCE
Q ss_conf 1325899999986-14188996378889768700536630----885221247750112567898760346556763202
Q 001729 28 VMSLREKIVEKVL-ENRVTLIVGETGCGKSSQVPQFLLAE----NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (1020)
Q Consensus 28 i~~~Q~~il~~i~-~~~~vII~g~TGSGKTtqip~~lle~----~~~~IivtqPrriaa~s~a~rva~e~~~~lg~~VGy 102 (1020)
..++|.+++..+. .+++++|+||||||||+....+++.. ..++++++.|+|.++.+.++.+...++..+|..|+.
T Consensus 927 fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ 1006 (1724)
T 4f92_B 927 FNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVL 1006 (1724)
T ss_dssp CCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEE
T ss_pred CCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCHHCCCEEEE
T ss_conf 99799999999966899689993798874699999999999858998799986829999999999999844220978999
Q ss_pred ECCCCC---CCCCCCEEEEEECHHHHHHHHHH--CCCCCEEEEEEEECCCCCCC----CCCEEEHHHHHHHH-CCCCEEE
Q ss_conf 013343---45655417865210326989871--22430138999501111233----45632021356764-1698479
Q 001729 103 HIGHSK---HLSERSKIVFKTAGVLLDEMRDR--GLNALKYKVIILDEVHERSV----ESDLVLVCVKQLLL-KKNDLRV 172 (1020)
Q Consensus 103 ~v~~~~---~~~~~t~Iiv~T~g~Ll~~l~~~--~l~l~~~~~IIIDEaHER~~----~~d~ll~~lk~ll~-~r~~lki 172 (1020)
..+... ....+++|+++|||++...+... ...+.++++||+||+|..+- ..+..+..++.+.. ..++.|+
T Consensus 1007 ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl~~i~~~~~~~~ri 1086 (1724)
T 4f92_B 1007 LTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRI 1086 (1724)
T ss_dssp CCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHHHHHHHTTSSCCEE
T ss_pred EECCCCCCHHHCCCCCEEEECHHHHHHHHHCCCCCCCCCEEEEEEEECHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCEE
T ss_conf 97997812111589999998879999998384446413523189701011047878763999999999998636888639
Q ss_pred EEEECCC-CHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9764044-223415877422975137999802898102577765689998887247756431111133378999756555
Q 001729 173 VLMSATA-DITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANA 251 (1020)
Q Consensus 173 IllSATl-d~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~y~~~~~~~~~~~ 251 (1020)
|+||||+ |++.+++|++.-... +..+... .+..+.+.. . ..+ ..........
T Consensus 1087 I~lSATl~N~~dla~WL~~~~~~----~~~~~~~--~RPvpL~~~------------------i--~~~-~~~~~~~~~~ 1139 (1724)
T 4f92_B 1087 VALSSSLSNAKDVAHWLGCSATS----TFNFHPN--VRPVPLELH------------------I--QGF-NISHTQTRLL 1139 (1724)
T ss_dssp EEEESCBTTHHHHHHHHTCCSTT----EEECCGG--GCSSCEEEE------------------E--EEE-CCCSHHHHHH
T ss_pred EEEECCCCCHHHHHHHHCCCCCC----EEEECCC--CCCCCEEEE------------------E--EEC-CCCCCHHHHH
T ss_conf 99928889999999986799877----5894888--888870899------------------9--803-6777166665
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHCCCC--------------------------------
Q ss_conf 458468998988643212588643331789710056599763630345--------------------------------
Q 001729 252 EIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPL-------------------------------- 299 (1020)
Q Consensus 252 ~~~~~~~~li~~li~~i~~~~~~~~g~iLVFl~s~~~ie~l~~~L~~~-------------------------------- 299 (1020)
.....+...+.. ..+ .+++|||++++..++.++..|...
T Consensus 1140 ----~~~~~~~~~i~~---~~~--~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~ 1210 (1724)
T 4f92_B 1140 ----SMAKPVYHAITK---HSP--KKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKE 1210 (1724)
T ss_dssp ----TTHHHHHHHHHH---HCS--SSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHH
T ss_pred ----HHCCHHHHHHHH---HCC--CCCEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHCCCHHHHH
T ss_conf ----320149999998---537--99721557888999999999998876264302220133999999986414288999
Q ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCEEEEEEEHHH
Q ss_conf 46148998404655699999978530022-18898203444311360567760653115554045555420268750217
Q 001729 300 SSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQ 378 (1020)
Q Consensus 300 ~~~~~v~~lHs~l~~~er~~i~~~f~~~r-kVIVATniaEtGItIP~V~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkas 378 (1020)
.....|..+|++|+.++|..+++.|+.|. +|||||+++++|||+|++.+||... .+||... ....+.|..+
T Consensus 1211 ~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~----~~~dg~~----~~~~~~s~~~ 1282 (1724)
T 4f92_B 1211 TLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDT----QYYNGKI----HAYVDYPIYD 1282 (1724)
T ss_dssp HHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECS----EEEETTT----TEEEECCHHH
T ss_pred HHHCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECHHHHCCCCCCCCEEEEECC----CCCCCCC----CCCCCCCHHH
T ss_conf 8747889977999999999999999779984999886997578988618999567----1136755----5667799999
Q ss_pred HHHHCCCCCCCC---CCEEEEEECHHHC---CCCCCCCCCCEEHHHHHH----HHHHHHCCCCCCCCCHH---HHHH---
Q ss_conf 887329987655---7706885310000---333436883100145867----88876506756557836---7876---
Q 001729 379 AEQRRGRTGRTC---DGQVYRLVTKSFF---GTLEDHECPAILRLSLRL----QVLLICCAESKAISDPK---VLLQ--- 442 (1020)
Q Consensus 379 ~~QR~GRAGR~~---~G~c~rLys~~~~---~~l~~~~~PEIlr~~L~~----~iL~l~~~~~~~l~~~~---~~l~--- 442 (1020)
+.||+|||||.+ .|.|+.++..... ..+. ..|+...+.|.. .++.....+ .+.+.. .++.
T Consensus 1283 ~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~ll--~~~~pveS~L~~~l~~~l~~eI~~~--~i~~~~d~~~~l~~Tf 1358 (1724)
T 4f92_B 1283 VLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFL--YEPLPVESHLDHCMHDHFNAEIVTK--TIENKQDAVDYLTWTF 1358 (1724)
T ss_dssp HHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHT--TSCBCCCCCGGGSCHHHHHHHHHTT--SCCBHHHHHHHHTTSS
T ss_pred HHHHHCCCCCCCCCCCEEEEEEECCHHHHHHHHHH--CCCCCEEEECCCCHHHHHHHHHHHC--CCCCHHHHHHHHHHHH
T ss_conf 99761513578878862899996545778999973--7997035454411178999999854--3488999999997307
Q ss_pred -------------------HHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCCEEEEEEEECCC
Q ss_conf -------------------4049999300566988889875521039997667641000022221333104899983541
Q 001729 443 -------------------KALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGEI 503 (1020)
Q Consensus 443 -------------------~~ldpP~~~~i~~al~~L~~lgald~~~~~G~~~lT~lG~~la~lPldp~~a~~ll~~~~~ 503 (1020)
..++....+.+..+++.|.+.|+|..+ .++.+.+|++|++++.++++|..++++.....-
T Consensus 1359 l~~r~~~nP~~y~l~~~~~~~~~~~l~~lv~~~l~~L~~~~~I~~~-~~~~l~~T~lG~i~s~~yi~~~t~~~~~~~l~~ 1437 (1724)
T 4f92_B 1359 LYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSKCISIE-DEMDVAPLNLGMIAAYYYINYTTIELFSMSLNA 1437 (1724)
T ss_dssp HHHHHHHSGGGTTCSCCSHHHHHHHHHHHHHHHHHHHHHTTSEEEE-TTTEEEECHHHHHHHHTTCCHHHHHHHHHHCCT
T ss_pred HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEC-CCCCEEECHHHHHHHHHCCCHHHHHHHHHHCCC
T ss_conf 9998730732025665335567899999999999999988899986-998786668999999977899999999985443
Q ss_pred HH-HHHHHHHHHHCC
Q ss_conf 02-343543321215
Q 001729 504 GM-LREGILLGILMD 517 (1020)
Q Consensus 504 gc-~~e~l~Iaa~Ls 517 (1020)
++ +.+++.+.+...
T Consensus 1438 ~~~~~~~L~il~~a~ 1452 (1724)
T 4f92_B 1438 KTKVRGLIEIISNAA 1452 (1724)
T ss_dssp TCCHHHHHHHHHTSG
T ss_pred CCCHHHHHHHHCCCC
T ss_conf 698888998840784
No 7
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=1.00 E-value=1 Score=329.20 Aligned_cols=301 Identities=22% Similarity=0.200 Sum_probs=221.2
Q ss_pred CCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHHCCCCCCCCCCCE
Q ss_conf 66752132589999998614188996378889768700536630885221247750112567898760346556763202
Q 001729 23 FSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (1020)
Q Consensus 23 r~~LPi~~~Q~~il~~i~~~~~vII~g~TGSGKTtqip~~lle~~~~~IivtqPrriaa~s~a~rva~e~~~~lg~~VGy 102 (1020)
+..||++.+|+++++.+.++++++++|+||||||+++++++++.+ .++++++|+|.+|.+++++++..++..++..+|+
T Consensus 213 r~~lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~g-~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~ 291 (666)
T 3o8b_A 213 TMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQG-YKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGV 291 (666)
T ss_dssp HHHSCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHTT-CCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSS
T ss_pred HCCCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 025975999999999997698499991895149999999999789-9699996549999999999999859972589885
Q ss_pred ECCCCCCCCCCCEEEEEECHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCEEEHHHHHHHHCCCCEEEEEEECCCCHH
Q ss_conf 01334345655417865210326989871224301389995011112334563202135676416984799764044223
Q 001729 103 HIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADIT 182 (1020)
Q Consensus 103 ~v~~~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~r~~lkiIllSATld~~ 182 (1020)
.. .....+|+|+|||+|+ ....+.+.++++|||||+|+++...+..+..+...+.......+++||||++..
T Consensus 292 ~~-----~~~~~~IlV~TPGrLl---~~~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~llil~SAT~~~~ 363 (666)
T 3o8b_A 292 RT-----ITTGAPVTYSTYGKFL---ADGGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGS 363 (666)
T ss_dssp CE-----ECCCCSEEEEEHHHHH---HTTSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEESSCTTC
T ss_pred EE-----CCCCCCEEEECCHHHH---HCCCCCCCCCCEEEECCCHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 76-----1589899998907887---488745475158998262324846799999999862412772699987889844
Q ss_pred HHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 41587742297513799980289810257776568999888724775643111113337899975655545846899898
Q 001729 183 KYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIH 262 (1020)
Q Consensus 183 ~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~li~ 262 (1020)
+. . ......++ ....... ... ......
T Consensus 364 -i~----~-~~p~i~~v-~~~~~~~-------------------------------------i~~-~~~~~~-------- 390 (666)
T 3o8b_A 364 -VT----V-PHPNIEEV-ALSNTGE-------------------------------------IPF-YGKAIP-------- 390 (666)
T ss_dssp -CC----C-CCTTEEEE-ECBSCSS-------------------------------------EEE-TTEEEC--------
T ss_pred -CC----C-CCCCEEEE-EECCCCH-------------------------------------HHH-HHHHHH--------
T ss_conf -45----6-77614777-5023204-------------------------------------678-876434--------
Q ss_pred HHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCC
Q ss_conf 86432125886433317897100565997636303454614899840465569999997853002218898203444311
Q 001729 263 DLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATNIAESSVT 342 (1020)
Q Consensus 263 ~li~~i~~~~~~~~g~iLVFl~s~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~~rkVIVATniaEtGIt 342 (1020)
+.. ...+++|||++++++++.+++.|.. .++.+..+||+++++++ ++++++|||||+++|+|||
T Consensus 391 -----l~~---~~~~~vLVFv~Tr~~ae~la~~L~~--~g~~v~~lHG~l~q~er------~~~~~~VLVATdVaerGID 454 (666)
T 3o8b_A 391 -----IEA---IRGGRHLIFCHSKKKCDELAAKLSG--LGINAVAYYRGLDVSVI------PTIGDVVVVATDALMTGYT 454 (666)
T ss_dssp -----GGG---SSSSEEEEECSCHHHHHHHHHHHHT--TTCCEEEECTTSCGGGS------CSSSCEEEEECTTHHHHCC
T ss_pred -----HHH---CCCCCEEEEECCHHHHHHHHHHHHH--CCCCEEEECCCCCHHHH------HHCCCCEEEECCHHHCCCC
T ss_conf -----554---0699589996888999999999986--79938986087889999------7289849998974772677
Q ss_pred CCCEEEEEECCCCEEEE----EECCCCCCCEEEEEEEHHHHHHHCCCCCCCCCCEEEEEECHHHCC
Q ss_conf 36056776065311555----404555542026875021788732998765577068853100003
Q 001729 343 IPKVAYVIDSCRSLQVF----WDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFG 404 (1020)
Q Consensus 343 IP~V~~VIDsG~~k~~~----yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~~G~c~rLys~~~~~ 404 (1020)
|| +++|||+|+.+... ||+..++.. ...|+|.+++.||+||+||.++|. |.|+++.+..
T Consensus 455 Id-V~~VI~~Gl~~~~ViNyDydP~~gl~~-~~~P~s~~syiQRiGRtGRg~~G~-i~lvt~~e~~ 517 (666)
T 3o8b_A 455 GD-FDSVIDCNTCVTQTVDFSLDPTFTIET-TTVPQDAVSRSQRRGRTGRGRRGI-YRFVTPGERP 517 (666)
T ss_dssp CC-BSEEEECCEEEEEEEECCCSSSCEEEE-EEEECBHHHHHHHHTTBCSSSCEE-EEESCCCCBC
T ss_pred CC-CCEEEECCCCCCCCCCCCCCCCCCCCC-CCCCCCHHHHHHHHCCCCCCCCCE-EEEEECCHHH
T ss_conf 89-758996676432211235553223223-557699999999863578899988-9998231310
No 8
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=326.02 Aligned_cols=358 Identities=16% Similarity=0.192 Sum_probs=237.0
Q ss_pred CCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHC--CCCCCCCCCCCEEHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 66752132589999998614188996378889768700536630--8852212477501125678987603465567632
Q 001729 23 FSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAE--NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEV 100 (1020)
Q Consensus 23 r~~LPi~~~Q~~il~~i~~~~~vII~g~TGSGKTtqip~~lle~--~~~~IivtqPrriaa~s~a~rva~e~~~~lg~~V 100 (1020)
.-.++++++|.++++++.++++++++|+||||||+++..+++.. ..++++++.|++.++.+.++++....+ .|
T Consensus 180 ~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~-----~V 254 (1108)
T 3l9o_A 180 TYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFG-----DV 254 (1108)
T ss_dssp CCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTS-----SE
T ss_pred HCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHC-----CC
T ss_conf 4799999999999999976998899889999719999999999975597499990849999999999999828-----92
Q ss_pred CEECCCCCCCCCCCEEEEEECHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCEEEHHHHHHHHCCCCEEEEEEECCC-
Q ss_conf 0201334345655417865210326989871224301389995011112334563202135676416984799764044-
Q 001729 101 GYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATA- 179 (1020)
Q Consensus 101 Gy~v~~~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~r~~lkiIllSATl- 179 (1020)
|+..+ .......++|+|+|||+|.+.+......+.++++||||||| +..+.++...+...+....++.++|+||||+
T Consensus 255 glltG-d~~~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH-~l~d~~rg~~~e~ii~~l~~~~qvl~lSATip 332 (1108)
T 3l9o_A 255 GLMTG-DITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVH-YMRDKERGVVWEETIILLPDKVRYVFLSATIP 332 (1108)
T ss_dssp EEECS-SCBCCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGG-GTTSHHHHHHHHHHHHHSCTTSEEEEEECSCS
T ss_pred CEEEC-CCCCCCCCCEEEECHHHHHHHHHCCCCCCCCCCEEEEHHHH-HCCCCCHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 18967-65268999989967699999997475432237899870021-20230068999999986477764999728889
Q ss_pred CHHHHHHHHHHCCCCCEEEEEEECCCCCHH---HHHHH-----------HHH-HHHHHHHHCCC-CCCCCCCCCCCCCCC
Q ss_conf 223415877422975137999802898102---57776-----------568-99988872477-564311111333789
Q 001729 180 DITKYRDYFRDLGRGERVEVLAIPSTNQRT---IFQRR-----------VSY-LEQVTELLGVD-HGMTSELSSLRYCSG 243 (1020)
Q Consensus 180 d~~~~~~~f~~~~~~~~v~v~~~p~~~~~~---~~~v~-----------v~y-l~~~~~~l~~~-~~~~~~~~~~~y~~~ 243 (1020)
+...+..|+..... .++.++.....+... .++.. -.+ .......+... .......... ....
T Consensus 333 n~~e~a~~l~~~~~-~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~ 410 (1108)
T 3l9o_A 333 NAMEFAEWICKIHS-QPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNST-DSRG 410 (1108)
T ss_dssp SCHHHHHHHHHHTC-SCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC----------------
T ss_pred CHHHHHHHHHHHCC-CCEEEEECCCCCCCCEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCC-CCCC
T ss_conf 87999999985158-982798347875540689862477642564144220115668999999875411332112-3433
Q ss_pred CCC-CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHCCCCCC---------------------
Q ss_conf 997-5655545846899898864321258864333178971005659976363034546---------------------
Q 001729 244 PSP-SMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSS--------------------- 301 (1020)
Q Consensus 244 ~~~-~~~~~~~~~~~~~li~~li~~i~~~~~~~~g~iLVFl~s~~~ie~l~~~L~~~~~--------------------- 301 (1020)
... ..............+..++..+.... .+++|||++++.+++.++..|.....
T Consensus 411 ~~~~~~~~~~~~~~~~~~l~~li~~l~~~~---~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~ 487 (1108)
T 3l9o_A 411 KKGQTYKGGSAKGDAKGDIYKIVKMIWKKK---YNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLP 487 (1108)
T ss_dssp --------------CHHHHHHHHHHHHHTT---CCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHCC---CCCEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 222234455544320568999999999628---99889995848789999999986469977789999999998875046
Q ss_pred ----------------CEEEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCCCCCCCCCCEEEEEECCCCEEEEEECCC
Q ss_conf ----------------148998404655699999978530022-188982034443113605677606531155540455
Q 001729 302 ----------------FFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNR 364 (1020)
Q Consensus 302 ----------------~~~v~~lHs~l~~~er~~i~~~f~~~r-kVIVATniaEtGItIP~V~~VIDsG~~k~~~yd~~~ 364 (1020)
...|.++||+|++.+|..+++.|+.|. +|||||+++++|||+|++++||+ |+.+.
T Consensus 488 ~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~--------~~~~~ 559 (1108)
T 3l9o_A 488 ETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFT--------SVRKW 559 (1108)
T ss_dssp HHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEES--------CSEEE
T ss_pred HHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCEEEEE--------CCCCC
T ss_conf 4433005688787765157565258998999999999986799849998727765778787459996--------57666
Q ss_pred CCCCEEEEEEEHHHHHHHCCCCCCCC---CCEEEEEECHHH
Q ss_conf 55420268750217887329987655---770688531000
Q 001729 365 KIDSAELVWVSQSQAEQRRGRTGRTC---DGQVYRLVTKSF 402 (1020)
Q Consensus 365 ~~~~l~~~~iSkas~~QR~GRAGR~~---~G~c~rLys~~~ 402 (1020)
+.. ...|+|.++|.||+|||||.+ .|.||.++++..
T Consensus 560 d~~--~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~ 598 (1108)
T 3l9o_A 560 DGQ--QFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKM 598 (1108)
T ss_dssp SSS--CEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCC
T ss_pred CCC--CCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEECCCC
T ss_conf 864--456389999997636347789998559999955886
No 9
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=1.00 E-value=1 Score=312.24 Aligned_cols=353 Identities=15% Similarity=0.194 Sum_probs=228.8
Q ss_pred CCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCC--HHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHHCCCCCCCCCCCE
Q ss_conf 7521325899999986141889963788897687--00536630885221247750112567898760346556763202
Q 001729 25 SLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQ--VPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGY 102 (1020)
Q Consensus 25 ~LPi~~~Q~~il~~i~~~~~vII~g~TGSGKTtq--ip~~lle~~~~~IivtqPrriaa~s~a~rva~e~~~~lg~~VGy 102 (1020)
.++++++|.++++.+.+++++++++|||||||+. ++.........+++++.|++.++.++++++....+ +..++.
T Consensus 37 ~f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l~~~~~---~~~v~~ 113 (997)
T 4a4z_A 37 PFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFD---DVNIGL 113 (997)
T ss_dssp SSCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHTTC-----CCEEE
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCC---CCEEEE
T ss_conf 99999999999999984998999979998589999999999983598599995879999999999999769---983999
Q ss_pred ECCCCCCCCCCCEEEEEECHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCEEEHHHHHHHHCCCCEEEEEEECCC-CH
Q ss_conf 01334345655417865210326989871224301389995011112334563202135676416984799764044-22
Q 001729 103 HIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATA-DI 181 (1020)
Q Consensus 103 ~v~~~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~r~~lkiIllSATl-d~ 181 (1020)
..+.. .....++|+|+||++|++.+......+.++++|||||+| +..+.++...+.+.+...+++.++|+||||+ +.
T Consensus 114 l~G~~-~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH-~l~d~~~g~~~e~ii~~l~~~v~iIlLSAT~~n~ 191 (997)
T 4a4z_A 114 ITGDV-QINPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVH-YVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNT 191 (997)
T ss_dssp ECSSC-EECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTT-CCCTTCTTCCHHHHHHHSCTTCEEEEEECCCTTH
T ss_pred EECCC-CCCCCCCEEEECHHHHHHHHHHCCHHHCCCCEEEEECCC-CCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCH
T ss_conf 96898-667999989988999999998181120578899998954-6666544899999998546688789976998976
Q ss_pred HHHHHHHHHCCCCCEEEEEEECCCCCH---------HHHH--------HHHHHHHHHHHHHCCCCCCCC--CC----CC-
Q ss_conf 341587742297513799980289810---------2577--------765689998887247756431--11----11-
Q 001729 182 TKYRDYFRDLGRGERVEVLAIPSTNQR---------TIFQ--------RRVSYLEQVTELLGVDHGMTS--EL----SS- 237 (1020)
Q Consensus 182 ~~~~~~f~~~~~~~~v~v~~~p~~~~~---------~~~~--------v~v~yl~~~~~~l~~~~~~~~--~~----~~- 237 (1020)
..|.+|++.... ..+.++..+..+.. ..++ ....|. ...+.+........ .. ..
T Consensus 192 ~ef~~~l~~~~~-~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~ 269 (997)
T 4a4z_A 192 YEFANWIGRTKQ-KNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFR-KHKEILNGESAKGAPSKTDNGRGGS 269 (997)
T ss_dssp HHHHHHHHHHHT-CCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHH-HHHHHHC------------------
T ss_pred HHHHHHHHCCCC-CCEEEEECCCCCCCCEEEEECCCCCHHCCCCHHHHHHHHHH-HHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 899999832358-86599836888756468885487500000420356677799-9999863224334321000001222
Q ss_pred -CCCCC----------------------C---CCCC--------CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEE
Q ss_conf -33378----------------------9---9975--------655545846899898864321258864333178971
Q 001729 238 -LRYCS----------------------G---PSPS--------MANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFL 283 (1020)
Q Consensus 238 -~~y~~----------------------~---~~~~--------~~~~~~~~~~~~li~~li~~i~~~~~~~~g~iLVFl 283 (1020)
.+... . .... ......... .+..++..+.... .+++|||+
T Consensus 270 ~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~li~~l~~~~---~~~~IVF~ 343 (997)
T 4a4z_A 270 TARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKK---TWPEIVNYLRKRE---LLPMVVFV 343 (997)
T ss_dssp -----------------------------------------------CCCCTT---HHHHHHHHHHHTT---CCSEEEEC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH---HHHHHHHHHHHCC---CCCEEEEE
T ss_conf 22344443212354333444445554444433444345665422122466666---8999999998479---99789998
Q ss_pred CCHHHHHHHHHHCCCCCC-------------------------------------CEEEEEEECCCCHHHHHHHHHHHHC
Q ss_conf 005659976363034546-------------------------------------1489984046556999999785300
Q 001729 284 PTYYALEQQWHLMKPLSS-------------------------------------FFKVHILHSSVDTEQALMAMKICKS 326 (1020)
Q Consensus 284 ~s~~~ie~l~~~L~~~~~-------------------------------------~~~v~~lHs~l~~~er~~i~~~f~~ 326 (1020)
+++.+++.++..|..... ...+.++||+|++.+|..+++.|+.
T Consensus 344 ~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~ 423 (997)
T 4a4z_A 344 FSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSK 423 (997)
T ss_dssp SCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHC
T ss_conf 98889999999984579997788999999999999744654421124787888863684662499999999999999977
Q ss_pred CC-EEEEEECCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCEEEEEEEHHHHHHHCCCCCCCC---CCEEEEEECH
Q ss_conf 22-18898203444311360567760653115554045555420268750217887329987655---7706885310
Q 001729 327 HR-KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTC---DGQVYRLVTK 400 (1020)
Q Consensus 327 ~r-kVIVATniaEtGItIP~V~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~~---~G~c~rLys~ 400 (1020)
|. +|||||+++++|||+|++.+|+ .+..+ ||.. ...|+|.+++.||+|||||.+ .|.||.++..
T Consensus 424 G~~kVLvAT~~~a~GIDiP~~~VVi-~~~~k---~dg~------~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~ 491 (997)
T 4a4z_A 424 GFIKVLFATETFAMGLNLPTRTVIF-SSIRK---HDGN------GLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYN 491 (997)
T ss_dssp TCCSEEEECTHHHHSCCCCCSEEEE-SCSEE---EETT------EEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCS
T ss_pred CCCCEEEECHHHHCCCCCCCCEEEE-ECCCC---CCCC------CCCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCC
T ss_conf 9983999720866779888866999-40532---4676------6777999998277413356887763599996488
No 10
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=1.00 E-value=1 Score=300.29 Aligned_cols=316 Identities=19% Similarity=0.240 Sum_probs=221.6
Q ss_pred CCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHCC-----CCCCCCCCCCEEHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 521325899999986141889963788897687005366308-----852212477501125678987603465567632
Q 001729 26 LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAEN-----MEPILCTQPRRFAVVAVAKMVAKGRNCELGGEV 100 (1020)
Q Consensus 26 LPi~~~Q~~il~~i~~~~~vII~g~TGSGKTtqip~~lle~~-----~~~IivtqPrriaa~s~a~rva~e~~~~lg~~V 100 (1020)
..++++|.++++.+.+++++++++|||+|||+++..++++.. ..+++++.|++.++.++++++..... ..+..+
T Consensus 61 ~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~-~~~~~~ 139 (414)
T 3eiq_A 61 EKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGD-YMGASC 139 (414)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGG-GSCCCE
T ss_pred CCCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHHHC-CCCCEE
T ss_conf 9999899998679857997899878998505999999999986057861699993759999999999999845-158339
Q ss_pred CEECCCCC-------CCCCCCEEEEEECHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCEEEHHHHHHHHCCCCEEEE
Q ss_conf 02013343-------45655417865210326989871224301389995011112334563202135676416984799
Q 001729 101 GYHIGHSK-------HLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVV 173 (1020)
Q Consensus 101 Gy~v~~~~-------~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~r~~lkiI 173 (1020)
+..++... .....++|+++||+.|++.+..+.+.+..+++|||||+|+ ..+.++...+.+.+...+++.++|
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~-~~~~~~~~~~~~~~~~~~~~~~~i 218 (414)
T 3eiq_A 140 HACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADE-MLSRGFKDQIYDIFQKLNSNTQVV 218 (414)
T ss_dssp EECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHH-HHHTTTHHHHHHHHTTSCTTCEEE
T ss_pred EEEECCCCHHHHHHHHHCCCCCEEEECHHHHHHHHHCCCCCCCCCCEEEEECHHH-HHCCCCHHHHHHHHHHCCCCCEEE
T ss_conf 9997896557899997369999999898999999975995630382999989888-620373999999998388877699
Q ss_pred EEECCCCHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 76404422341587742297513799980289810257776568999888724775643111113337899975655545
Q 001729 174 LMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEI 253 (1020)
Q Consensus 174 llSATld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 253 (1020)
+||||++.+.....-..+. .+..+. ...... . .......+ .....
T Consensus 219 ~~SAT~~~~~~~~~~~~~~--~~~~~~-~~~~~~--~----------------------~~~~~~~~--------~~~~~ 263 (414)
T 3eiq_A 219 LLSATMPSDVLEVTKKFMR--DPIRIL-VKKEEL--T----------------------LEGIRQFY--------INVER 263 (414)
T ss_dssp EECSCCCHHHHHHHTTTCS--SCEEEC-CCCCCC--C----------------------TTSCCEEE--------EECSS
T ss_pred EEEEECCHHHHHHHHHHCC--CCEEEE-ECCCCC--C----------------------CCCCEEEE--------EEECH
T ss_conf 9998368789999998758--978999-247766--8----------------------89805999--------99676
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCC-EEEE
Q ss_conf 846899898864321258864333178971005659976363034546148998404655699999978530022-1889
Q 001729 254 KPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVIL 332 (1020)
Q Consensus 254 ~~~~~~li~~li~~i~~~~~~~~g~iLVFl~s~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~er~~i~~~f~~~r-kVIV 332 (1020)
.......+.+++. ... .+++|||++++.+++.+++.|.. .++.+..+||+++.++|..+++.|+++. +|||
T Consensus 264 ~~~~~~~l~~~~~----~~~--~~~~lvf~~~~~~~~~l~~~l~~--~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv 335 (414)
T 3eiq_A 264 EEWKLDTLCDLYE----TLT--ITQAVIFINTRRKVDWLTEKMHA--RDFTVSAMHGDMDQKERDVIMREFRSGSSRVLI 335 (414)
T ss_dssp STTHHHHHHHHHH----SSC--CSSCEEECSCHHHHHHHHHHHHT--TTCCCEEC---CHHHHHHHHHHHHSCC---CEE
T ss_pred HHHHHHHHHHHHH----HCC--CCCEEEEECCHHHHHHHHHHHHH--CCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEE
T ss_conf 8758999999998----479--98289996878999999999986--697089734779999999999999759993999
Q ss_pred EECCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCEEEEEEEHHHHHHHCCCCCCC-CCCEEEEEECHHHCC
Q ss_conf 820344431136056776065311555404555542026875021788732998765-577068853100003
Q 001729 333 ATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRT-CDGQVYRLVTKSFFG 404 (1020)
Q Consensus 333 ATniaEtGItIP~V~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkas~~QR~GRAGR~-~~G~c~rLys~~~~~ 404 (1020)
||+++++|+|+|++++||+ |+.+. |..++.||+|||||. ++|.|+.++++.+..
T Consensus 336 ~T~~~~~Gidip~v~~Vi~--------~~~p~----------s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 390 (414)
T 3eiq_A 336 TTDLLARGIDVQQVSLVIN--------YDLPT----------NRENYIHRIGRGGRFGRKGVAINMVTEEDKR 390 (414)
T ss_dssp ECSSCC--CCGGGCSCEEE--------SSCCS----------STHHHHHHSCCC-------CEEEEECSTHHH
T ss_pred ECCCCCCCCCCCCCCEEEE--------ECCCC----------CHHHHHHHCCCCCCCCCCCEEEEEECHHHHH
T ss_conf 8883126978567888999--------67999----------8888234157256898976699997277899
Done!