BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001731
         (1019 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q2NKX8|ERC6L_HUMAN DNA excision repair protein ERCC-6-like OS=Homo sapiens GN=ERCC6L
           PE=1 SV=1
          Length = 1250

 Score =  481 bits (1238), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 266/626 (42%), Positives = 382/626 (61%), Gaps = 67/626 (10%)

Query: 292 STYMLPGKIGNMLFPHQREGLRWLWSLHCQG-KGGILGDDMGLGKTMQICGFLAGLFHSR 350
           S  +L  ++ N LF HQ+EG+ +L+SL+  G KGGIL DDMGLGKT+QI  FL+G+F + 
Sbjct: 84  SGLLLYRELHNQLFEHQKEGIAFLYSLYRDGRKGGILADDMGLGKTVQIIAFLSGMFDAS 143

Query: 351 LIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYD 410
           L+   L++ P  L++ W+KE        +++ + G     R   L  + Q  GV++TTY 
Sbjct: 144 LVNHVLLIMPTNLINTWVKEFIKWTPGMRVKTFHGPSKDERTRNLNRIQQRNGVIITTYQ 203

Query: 411 IVRNNSK---SLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRI 467
           ++ NN +   S RG  F+          WDY+ILDE H IK  ST+ A     IP+++R+
Sbjct: 204 MLINNWQQLSSFRGQEFV----------WDYVILDEAHKIKTSSTKSAICARAIPASNRL 253

Query: 468 IISGTPIQNNLKELWALFNFCCP-ELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAV 526
           +++GTPIQNNL+ELW+LF+F C   LLG  K FK +YE PI R  +K A   EK +G  +
Sbjct: 254 LLTGTPIQNNLQELWSLFDFACQGSLLGTLKTFKMEYENPITRAREKDATPGEKALGFKI 313

Query: 527 AKELRERIQPYFLRRLKNEVFHE----------------DDVTSSATLSKKNEMIVWLRL 570
           ++ L   I+PYFLRR K +V  +                D +    +LS+KN++I+W+RL
Sbjct: 314 SENLMAIIKPYFLRRTKEDVQKKKSSNPEARLNEKNPDVDAICEMPSLSRKNDLIIWIRL 373

Query: 571 TSCQRQLYEAFLN----SEIVLSAFDGSPLAALTILKKICDHPLLLTKRA---------- 616
              Q ++Y  F++     E+++     SPLA L +LKK+CDHP LL+ RA          
Sbjct: 374 VPLQEEIYRKFVSLDHIKELLMET--RSPLAELGVLKKLCDHPRLLSARACCLLNLGTFS 431

Query: 617 AEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPE 676
           A+D  +G DS   P+          HI  V +    +E     S K+ F++ LL +L  E
Sbjct: 432 AQDGNEGEDS---PD--------VDHIDQVTDDTLMEE-----SGKMIFLMDLLKRLRDE 475

Query: 677 GHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGT-TKASDRVKIVNDFQEGDVAPIFLLT 735
           GH  L+FSQ+R++LN+I+  + ++ +K LRIDGT T   +R K +N FQ+     +FLLT
Sbjct: 476 GHQTLVFSQSRQILNIIERLLKNRHFKTLRIDGTVTHLLEREKRINLFQQNKDYSVFLLT 535

Query: 736 SQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIY 795
           +QVGG+GLTLT A RV++ DP+WNP+TD Q+VDR YRIGQK++VVVYRL+TCGTVEEKIY
Sbjct: 536 TQVGGVGLTLTAATRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIY 595

Query: 796 RKQIFKGGLFKTAT-EHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGDQHNMD 854
           R+Q+FK  L +  T E K   RYFS+Q+LREL ++  +    S+TQ QL   H  Q   D
Sbjct: 596 RRQVFKDSLIRQTTGEKKNPFRYFSKQELRELFTI--EDLQNSVTQLQLQSLHAAQRKSD 653

Query: 855 ESLEAHIQFLDTLGIAGVSHHSLLFS 880
             L+ HI +L +LGIAG+S H L+++
Sbjct: 654 IKLDEHIAYLQSLGIAGISDHDLMYT 679


>sp|Q8BHK9|ERC6L_MOUSE DNA excision repair protein ERCC-6-like OS=Mus musculus GN=Ercc6l
           PE=1 SV=1
          Length = 1240

 Score =  479 bits (1232), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 270/653 (41%), Positives = 392/653 (60%), Gaps = 58/653 (8%)

Query: 304 LFPHQREGLRWLWSLHCQG-KGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKT 362
           LF HQ+EG+ +L+SL+  G KGGIL DDMGLGKT+QI  FL+G+F + L+   L++ P  
Sbjct: 97  LFEHQKEGIAFLYSLYKDGRKGGILADDMGLGKTVQIIAFLSGMFDASLVNHVLLIMPTN 156

Query: 363 LLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSK---SL 419
           L++ W+ E        +++ + G+    R   L  + Q  GV++TTY ++ NN +   S 
Sbjct: 157 LINTWVNEFAKWTPGMRVKTFHGSSKSERTRSLTRIQQRNGVVITTYQMLLNNWQQLASF 216

Query: 420 RGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLK 479
            G +F+          WDY+ILDE H IK+ ST+ A     IP+++R++++GTP+QNNL+
Sbjct: 217 NGQAFV----------WDYVILDEAHKIKSASTKSAVCARAIPASNRLLLTGTPVQNNLQ 266

Query: 480 ELWALFNFCCP-ELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYF 538
           ELW+LF+F C   LLG  K FK +YE PI+R  +K A   EK +G  +++ L E I+PYF
Sbjct: 267 ELWSLFDFACQGSLLGTLKTFKMEYEHPIIRAREKDATPGEKALGLKISENLMEIIKPYF 326

Query: 539 LRRLKNEV-----------FHEDDVTSSA-----TLSKKNEMIVWLRLTSCQRQLYEAFL 582
           LRR K EV             E +    A     +L++KN++IVW+RL   Q ++Y  F+
Sbjct: 327 LRRTKEEVQTKKADNPEARLGEKNPAGEAICDMFSLARKNDLIVWIRLLPLQEEIYRKFV 386

Query: 583 N----SEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEK 638
           +     E+++     SPLA L +LKK+CDHP LL+ RA          +LN   A  + +
Sbjct: 387 SLDHIKELLMET--RSPLAELGVLKKLCDHPRLLSARACR--------LLNLGTATFSAQ 436

Query: 639 LAMHIADVAEKDDFQEQHDNI----SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQ 694
                 DV+  +      D      S K+ F++SLL++L  EGH  L+FSQ+ K+LN+I+
Sbjct: 437 DENEQEDVSNMNSIDHLPDKTLIQESGKMIFLMSLLERLQDEGHQTLVFSQSIKILNIIE 496

Query: 695 ESIGSKGYKFLRIDGT-TKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIV 753
             + +K +K LRIDGT T   +R K +  FQ+     +FLLT+QVGG+GLTLT A RV++
Sbjct: 497 RLLKNKHFKTLRIDGTVTHLWEREKRIQLFQQNKEYSVFLLTTQVGGVGLTLTAATRVVI 556

Query: 754 VDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTAT-EHK 812
            DP+WNP+TD Q+VDR YRIGQK++VVVYRL+TCGTVEEKIYR+Q+FK  L +  T E K
Sbjct: 557 FDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTGEKK 616

Query: 813 EQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGDQHNMDESLEAHIQFLDTLGIAGV 872
              RYF++Q+L+EL ++       S TQ QL   H  Q   DE L+ HI +L  LGIAG+
Sbjct: 617 NPFRYFTKQELKELFTV--GDLQKSATQMQLQCLHAAQRRSDEKLDEHIAYLHLLGIAGI 674

Query: 873 SHHSLLFSKTARVQ----VVQEEEEATRRKGTA-FVGNSSSSYLVARNVDGAE 920
           S H L+F++   V+    ++++ +   +R   A F+  S S   V R   G E
Sbjct: 675 SDHDLMFTRDLSVKEELDMLEDSQYIHQRVQKAQFLVESESQNTVQRQTTGIE 727


>sp|A6QQR4|ERC6L_BOVIN DNA excision repair protein ERCC-6-like OS=Bos taurus GN=ERCC6L
           PE=2 SV=1
          Length = 1242

 Score =  478 bits (1231), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 260/626 (41%), Positives = 386/626 (61%), Gaps = 53/626 (8%)

Query: 292 STYMLPGKIGNMLFPHQREGLRWLWSLHCQGK-GGILGDDMGLGKTMQICGFLAGLFHSR 350
           S  +L  ++ N L+ +Q+EG+ +L+SL+  G+ GGIL DDMGLGKT+QI  FL+G+F + 
Sbjct: 84  SGLLLYQELHNQLYEYQKEGIAFLYSLYRDGRRGGILADDMGLGKTVQIIAFLSGMFDAS 143

Query: 351 LIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYD 410
           L+   L++ P +L+S W++E        +++ + G     R   L  + Q  GV++TTY 
Sbjct: 144 LVNHVLLIMPTSLISTWLREFVKWTPGMRVKTFHGPSKDERTRNLCRIQQRNGVIITTYQ 203

Query: 411 IVRNNSK---SLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRI 467
           ++ NN +   SL G  F+          WDY+ILDE H IK+ ST+ A     IP+++RI
Sbjct: 204 MLINNWQQLSSLNGQEFL----------WDYVILDEAHKIKSSSTKSAICARAIPASNRI 253

Query: 468 IISGTPIQNNLKELWALFNFCCP-ELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAV 526
           +++GTPIQNNL+ELW+LF+F C   LLG  + FK +YE PI R  +K A   EK +G  +
Sbjct: 254 LLTGTPIQNNLQELWSLFDFACQGSLLGTLRTFKMEYENPITRAREKDATPGEKALGFKI 313

Query: 527 AKELRERIQPYFLRRLKNEVFHEDD----------------VTSSATLSKKNEMIVWLRL 570
           ++ L   I+PYFLRR K EV  +                  +    +LS+KN++I+W+RL
Sbjct: 314 SENLMAIIKPYFLRRTKEEVQKKKSSNPEVQLSEKSPDVGAICEMPSLSRKNDLIIWIRL 373

Query: 571 TSCQRQLYEAFLN----SEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLDGMDS 626
              Q ++Y  F++     E+++     SPLA L +LKK+CDHP LL+ RA          
Sbjct: 374 VPLQEEIYRKFVSLDHIKELLMET--RSPLAELGVLKKLCDHPRLLSARAC--------G 423

Query: 627 MLNPEDAALAEKLAMHIADVAEKDDFQEQHDNI----SCKISFILSLLDKLIPEGHNVLI 682
           +LN   A  + +  +   D ++ D   +  D+     S K+ F++ LL KL  EGH  L+
Sbjct: 424 LLNLGAAKFSVQDEIEGEDSSDVDHIDQISDDTLMEESGKMLFLMDLLKKLRDEGHQTLV 483

Query: 683 FSQTRKMLNLIQESIGSKGYKFLRIDGT-TKASDRVKIVNDFQEGDVAPIFLLTSQVGGL 741
           FSQ+R++LN+I+  + ++ +K LRIDGT T   +R K ++ FQ+     +FLLT+QVGG+
Sbjct: 484 FSQSRRILNIIERLLKNRHFKILRIDGTITHLVEREKRISLFQQNKDYSVFLLTTQVGGV 543

Query: 742 GLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 801
           GLTLT A RV++ DP+WNP+TD Q+VDR YRIGQK++VVVYRL+TCGTVEEKIYR+Q+FK
Sbjct: 544 GLTLTAASRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFK 603

Query: 802 GGLFKTAT-EHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGDQHNMDESLEAH 860
             L +  T + K   RYFS+Q+LREL ++  + F  S TQ QL   H  Q   D++L+ H
Sbjct: 604 DSLIRQTTGDKKNPFRYFSKQELRELFTI--EDFQNSATQLQLQSLHAAQRRSDKNLDEH 661

Query: 861 IQFLDTLGIAGVSHHSLLFSKTARVQ 886
           I FL +L IAG+S H L++++   V+
Sbjct: 662 IAFLHSLRIAGISDHDLMYTRDLSVK 687


>sp|A2BGR3|ERC6L_DANRE DNA excision repair protein ERCC-6-like OS=Danio rerio GN=ercc6l
           PE=1 SV=1
          Length = 1451

 Score =  475 bits (1223), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 254/607 (41%), Positives = 382/607 (62%), Gaps = 45/607 (7%)

Query: 304 LFPHQREGLRWLWSLHCQG-KGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKT 362
           L+ HQ+EG+ +L+SL+  G KGGIL DDMGLGKT+Q+  FL+G++ + L    L+V P +
Sbjct: 105 LYDHQKEGVAFLYSLYRDGRKGGILADDMGLGKTIQVISFLSGMYDAELANHTLLVMPTS 164

Query: 363 LLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGS 422
           L+ +W++E        +++E+ G+    R   L+ + +  GV++TTY ++ NN + L GS
Sbjct: 165 LIKNWVREFAKWTPGMRVKEFHGSSKTERNRNLERIQRKGGVIITTYQMLINNYEQL-GS 223

Query: 423 SFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELW 482
           +      G  +  WDY+ILDE H IK  ST+ AKS   IP+ +R++++GTP+QNNL+E+W
Sbjct: 224 N------GHREFKWDYVILDEAHKIKTSSTKTAKSAHAIPAKNRVLLTGTPVQNNLREMW 277

Query: 483 ALFNFCCP-ELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRR 541
           ALF+F C   LLG +K FK +YE PI R  +K A   EK +G  +++ L + I+PYFLRR
Sbjct: 278 ALFDFACQGSLLGTSKTFKTEYENPITRAREKDATPGEKALGLRISQNLTDIIKPYFLRR 337

Query: 542 LK---------------------NEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEA 580
            K                     N+  +  +     +L++KN++IVW  L+S Q  +Y  
Sbjct: 338 TKADVQQKKLKLEEGFEEEEDQENKCPNAREGVEMPSLTRKNDLIVWTYLSSVQEDIYNK 397

Query: 581 FLNSEIV--LSAFDGSPLAALTILKKICDHPLLLTKRAAEDV--LDGMDSMLNPEDAALA 636
           F++ + +  L     SPLA LT+LKK+CDHP LL++RA   +    G DS L   D +  
Sbjct: 398 FISLDQIKELLTTTRSPLAELTVLKKLCDHPRLLSQRAVIQLGLERGSDSELVHSDES-- 455

Query: 637 EKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQES 696
           E     I ++++    +E     S K+ F++SL++ L  EGH  LIFSQ+RKML++++  
Sbjct: 456 ESAVSQIDNISDHTLIEE-----SGKLQFVVSLMECLREEGHRTLIFSQSRKMLDIMERV 510

Query: 697 IGSKGYKFLRIDGT-TKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVD 755
           + ++ ++ LR+DGT T+ ++R K ++ FQ      IFLLT+QVGG+G+TLT A+RV++ D
Sbjct: 511 LRNRNFRLLRLDGTVTQLAEREKRISLFQTDKRYTIFLLTTQVGGVGITLTGANRVVIFD 570

Query: 756 PAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTAT-EHKEQ 814
           P+WNP+TD Q+VDRAYRIGQ ++V++YRL+TCGTVEEKIYR+Q+FK  L +  T + K  
Sbjct: 571 PSWNPATDAQAVDRAYRIGQTENVIIYRLITCGTVEEKIYRRQVFKDSLIRQTTGDKKNP 630

Query: 815 IRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGDQHNMDESLEAHIQFLDTLGIAGVSH 874
            RYFS+Q+LREL  L  +    S TQQQL   H      D SL+ HI  L ++ + G+S 
Sbjct: 631 FRYFSKQELRELFKL--EDTRSSSTQQQLQAMHAQSRRSDTSLDHHIARLHSMEMFGISD 688

Query: 875 HSLLFSK 881
           H L+F+K
Sbjct: 689 HDLMFTK 695


>sp|Q03468|ERCC6_HUMAN DNA excision repair protein ERCC-6 OS=Homo sapiens GN=ERCC6 PE=1 SV=1
          Length = 1493

 Score =  372 bits (955), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 216/576 (37%), Positives = 323/576 (56%), Gaps = 66/576 (11%)

Query: 270  LDDYSDDSVLE-DEGSITLSGPRSTYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILG 328
            L+D S++S  E DEG          + +PG +   LF +Q+ G+RWLW LHCQ  GGILG
Sbjct: 482  LEDDSEESDAEFDEG----------FKVPGFLFKKLFKYQQTGVRWLWELHCQQAGGILG 531

Query: 329  DDMGLGKTMQICGFLAGLFHSRLIKRA-----------LVVAPKTLLSHWIKELTA--VG 375
            D+MGLGKT+QI  FLAGL +S++  R            ++V P T++  W+KE       
Sbjct: 532  DEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRFEGLGPTVIVCPTTVMHQWVKEFHTWWPP 591

Query: 376  LSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAI 435
                I    G+    ++  ++ V    G+L+T+Y  +R           + D+    D  
Sbjct: 592  FRVAILHETGSYTHKKEKLIRDVAHCHGILITSYSYIR----------LMQDDISRYD-- 639

Query: 436  WDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGD 495
            W Y+ILDEGH I+NP+     +  +  + HRII+SG+P+QNNL+ELW+LF+F  P  LG 
Sbjct: 640  WHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGT 699

Query: 496  NKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSS 555
               F E++ +PI  G   +A   + +     A  LR+ I PY LRR+K+      DV  S
Sbjct: 700  LPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKS------DVKMS 753

Query: 556  ATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSP--LAALTILKKICDHPLLLT 613
             +L  KNE +++ RLT  Q ++Y+ F++S+ V    +G     + L  L+KIC+HP L +
Sbjct: 754  LSLPDKNEQVLFCRLTDEQHKVYQNFVDSKEVYRILNGEMQIFSGLIALRKICNHPDLFS 813

Query: 614  KRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKL 673
                   L G+     P+D               E+D F   +   S K+  + SLL   
Sbjct: 814  --GGPKNLKGL-----PDDEL-------------EEDQFG--YWKRSGKMIVVESLLKIW 851

Query: 674  IPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFL 733
              +G  VL+FSQ+R+ML++++  + ++ Y +L++DGTT  + R  ++  + E     +FL
Sbjct: 852  HKQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDGTTTIASRQPLITRYNEDTSIFVFL 911

Query: 734  LTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEK 793
            LT++VGGLG+ LT A+RV++ DP WNPSTD Q+ +RA+RIGQKK V VYRL+T GT+EEK
Sbjct: 912  LTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEK 971

Query: 794  IYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSL 829
            IY +QIFK  L     +  +Q R+F   DL EL +L
Sbjct: 972  IYHRQIFKQFLTNRVLKDPKQRRFFKSNDLYELFTL 1007


>sp|Q9UR24|RHP26_SCHPO DNA repair protein rhp26 OS=Schizosaccharomyces pombe (strain 972 /
           ATCC 24843) GN=rhp26 PE=4 SV=1
          Length = 973

 Score =  357 bits (916), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 217/567 (38%), Positives = 318/567 (56%), Gaps = 70/567 (12%)

Query: 294 YMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHS-RLI 352
           + +PG I   LF +Q   ++WLW L+CQ  GGI+GD+MGLGKT+QI  FL+ L HS +  
Sbjct: 267 FTIPGDIRPHLFRYQVTCVQWLWELYCQEAGGIIGDEMGLGKTIQIVSFLSSLHHSGKFQ 326

Query: 353 KRALVVAPKTLLSHWIKE------------LTAVG----LSAKIREYFGTCVKTRQYELQ 396
           K AL+V P TL+  W+ E            L A G     S + R+Y     ++   E +
Sbjct: 327 KPALIVCPATLMKQWVNEFHTWWAPLRVVVLHATGSGQRASREKRQYESDASESEAEESK 386

Query: 397 YVLQDKGVLLTTYDIVRNNSKSL--RGSSFISDEAG---DDDAI----WDYMILDEGHLI 447
             ++ +G   + +   +N  +S+  RG   I+  AG     D I    W Y +LDEGH I
Sbjct: 387 TSIKLRGASSSFHRYAKNLVESVFTRGHILITTYAGLRIYGDLILPREWGYCVLDEGHKI 446

Query: 448 KNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPI 507
           +NP ++ + S  +I + +RII+SGTPIQNNL ELW LF+F  P  LG    F+ ++ LPI
Sbjct: 447 RNPDSEISISCKQIRTVNRIILSGTPIQNNLTELWNLFDFVFPGRLGTLPVFQNQFALPI 506

Query: 508 LRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVW 567
             G   +A + + +     A  LR+ I PY LRR+K +V        +A L KK+E +++
Sbjct: 507 NIGGYANASNVQVQTAYKCACMLRDLISPYLLRRMKLDV--------AADLPKKSEQVLF 558

Query: 568 LRLTSCQRQLYEAFLNSEIVLSAFDG--SPLAALTILKKICDHPLLLTKRAAEDVLDGMD 625
            +LT  QR+ Y+ FL    +    +G    L  + IL+KIC+HP L+T+           
Sbjct: 559 CKLTPLQRKAYQDFLQGSDMQKILNGKRQMLYGIDILRKICNHPDLVTR----------- 607

Query: 626 SMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQ 685
                       +  +H      K+D+       S K+  I +LL     +GH  L+FSQ
Sbjct: 608 ------------EYLLH------KEDYNYGDPEKSGKLKVIRALLTLWKKQGHRTLLFSQ 649

Query: 686 TRKMLNLIQESIGSKGY---KFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLG 742
           TR+ML++++  IG K      + R+DG+T  + R  +V++F + +   +FLLT++VGGLG
Sbjct: 650 TRQMLDILE--IGLKDLPDVHYCRMDGSTSIALRQDLVDNFNKNEYFDVFLLTTRVGGLG 707

Query: 743 LTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKG 802
           + LT ADRVI+ DP WNPSTD Q+ +RA+R+GQKKDVVVYRLMT GT+EEKIY +QIFK 
Sbjct: 708 VNLTGADRVILFDPDWNPSTDAQARERAWRLGQKKDVVVYRLMTAGTIEEKIYHRQIFKQ 767

Query: 803 GLFKTATEHKEQIRYFSQQDLRELLSL 829
            L     +  +Q R+F   DL +L +L
Sbjct: 768 FLTNKILKDPKQRRFFKMTDLHDLFTL 794


>sp|P40352|RAD26_YEAST DNA repair and recombination protein RAD26 OS=Saccharomyces
           cerevisiae (strain ATCC 204508 / S288c) GN=RAD26 PE=1
           SV=1
          Length = 1085

 Score =  318 bits (814), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 204/599 (34%), Positives = 325/599 (54%), Gaps = 90/599 (15%)

Query: 292 STYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRL 351
           S + +PG+I ++LF +Q+  ++WL+ L+ Q  GGI+GD+MGLGKT+Q+  F+A L HS L
Sbjct: 285 SQFKIPGEIYSLLFNYQKTCVQWLYELYQQNCGGIIGDEMGLGKTIQVIAFIAALHHSGL 344

Query: 352 IK-RALVVAPKTLLSHWIKELTAVG--LSAKIREYFGTCVKTRQY------ELQYVLQDK 402
           +    L+V P T++  W  E       L   I    G+ + + Q       +L+ ++ + 
Sbjct: 345 LTGPVLIVCPATVMKQWCNEFQHWWPPLRTVILHSMGSGMASDQKFKMDENDLENLIMNS 404

Query: 403 GVLLTTYDIVRNNSKSLRG--SSF----ISDEAGDDDAI-------------------WD 437
                +Y+  +N++++ +   SS+    + D+   D  I                   W 
Sbjct: 405 KPSDFSYEDWKNSTRTKKALESSYHLDKLIDKVVTDGHILITTYVGLRIHSDKLLKVKWQ 464

Query: 438 YMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNK 497
           Y +LDEGH I+NP ++ + +  ++ + +RII+SGTPIQNNL ELW+LF+F  P  LG   
Sbjct: 465 YAVLDEGHKIRNPDSEISLTCKKLKTHNRIILSGTPIQNNLTELWSLFDFIFPGKLGTLP 524

Query: 498 WFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSAT 557
            F++++ +PI  G   +A + + + G   A  LR+ I PY LRR+K +V        +  
Sbjct: 525 VFQQQFVIPINIGGYANATNIQVQTGYKCAVALRDLISPYLLRRVKADV--------AKD 576

Query: 558 LSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDG--SPLAALTILKKICDHPLLL--- 612
           L +K EM+++ +LT  QR  Y  FL+S  +    +G  + L  + IL+KIC+HP LL   
Sbjct: 577 LPQKKEMVLFCKLTKYQRSKYLEFLHSSDLNQIQNGKRNVLFGIDILRKICNHPDLLDRD 636

Query: 613 TKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDK 672
           TKR   D  D       P+                            S K+  +  LL  
Sbjct: 637 TKRHNPDYGD-------PKR---------------------------SGKMQVVKQLLLL 662

Query: 673 LIPEGHNVLIFSQTRKMLNLIQESIGSKG-----YKFLRIDGTTKASDRVKIVNDFQEGD 727
              +G+  L+F+Q+R+ML++++E I +K        +LR+DGTT    R  +V+ F   +
Sbjct: 663 WHKQGYKALLFTQSRQMLDILEEFISTKDPDLSHLNYLRMDGTTNIKGRQSLVDRFN-NE 721

Query: 728 VAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTC 787
              +FLLT++VGGLG+ LT A+R+I+ DP WNPSTD Q+ +RA+RIGQK++V +YRLM  
Sbjct: 722 SFDVFLLTTRVGGLGVNLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVSIYRLMVG 781

Query: 788 GTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEE 846
           G++EEKIY +QIFK  L        +Q R+F   +L +L SL   G +   + ++L+EE
Sbjct: 782 GSIEEKIYHRQIFKQFLTNRILTDPKQKRFFKIHELHDLFSL---GGENGYSTEELNEE 837


>sp|O14981|BTAF1_HUMAN TATA-binding protein-associated factor 172 OS=Homo sapiens GN=BTAF1
            PE=1 SV=2
          Length = 1849

 Score =  271 bits (694), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 196/590 (33%), Positives = 285/590 (48%), Gaps = 91/590 (15%)

Query: 294  YMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIK 353
            Y +P  I   L  +Q++G+ WL  L+     GIL DDMGLGKT+Q    LAG    R  +
Sbjct: 1256 YKIPVPINAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCHRAQE 1315

Query: 354  RA------------LVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQD 401
             A            LVV P TL  HW+ E+        +     T   T +  LQ+ ++ 
Sbjct: 1316 YARSKLAECMPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERIRLQHQVKR 1375

Query: 402  KGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEI 461
              +++ +YD+VRN+    R   F            +Y ILDEGH+IKN  T+ +K++ ++
Sbjct: 1376 HNLIVASYDVVRNDIDFFRNIKF------------NYCILDEGHVIKNGKTKLSKAVKQL 1423

Query: 462  PSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKR 521
             + +RII+SGTPIQNN+ ELW+LF+F  P  LG  + F  +Y  PIL   D  +  RE+ 
Sbjct: 1424 TANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQE 1483

Query: 522  IGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAF 581
             G      L  ++ P+ LRR+K +V  +        L  K     +  L+  Q QLYE F
Sbjct: 1484 AGVLAMDALHRQVLPFLLRRMKEDVLQD--------LPPKIIQDYYCTLSPLQVQLYEDF 1535

Query: 582  LNS-------EIVLSA------------FDGSPLAALTILKKICDHP-LLLTKRAAEDVL 621
              S       E V SA              G    AL  L+K+C+HP L+LT +      
Sbjct: 1536 AKSRAKCDVDETVSSATLSEETEKPKLKATGHVFQALQYLRKLCNHPALVLTPQ------ 1589

Query: 622  DGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLL----------- 670
                   +PE    AEKLA+  + +    D Q      + K+S +  LL           
Sbjct: 1590 -------HPEFKTTAEKLAVQNSSL---HDIQH-----APKLSALKQLLLDCGLGNGSTS 1634

Query: 671  ---DKLIPEGHNVLIFSQTRKMLNLIQESIGS---KGYKFLRIDGTTKASDRVKIVNDFQ 724
                + +   H +LIF Q + ML++++  +         +LR+DG+     R  IV+ F 
Sbjct: 1635 ESGTESVVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFN 1694

Query: 725  EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRL 784
                  + LLT+ VGGLGL LT AD V+ V+  WNP  D Q++DRA+RIGQK+ V VYRL
Sbjct: 1695 NDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRL 1754

Query: 785  MTCGTVEEKIYRKQIFKGGLFKTA-TEHKEQIRYFSQQDLRELLSLPKQG 833
            +T GT+EEKI   Q FK  +  T  ++    ++      L +L +L K G
Sbjct: 1755 ITRGTLEEKIMGLQKFKMNIANTVISQENSSLQSMGTDQLLDLFTLDKDG 1804


>sp|P32333|MOT1_YEAST TATA-binding protein-associated factor MOT1 OS=Saccharomyces
            cerevisiae (strain ATCC 204508 / S288c) GN=MOT1 PE=1 SV=1
          Length = 1867

 Score =  269 bits (687), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 186/570 (32%), Positives = 285/570 (50%), Gaps = 66/570 (11%)

Query: 294  YMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSR--- 350
            + LP  I   L  +Q++G+ WL  L+     GIL DDMGLGKT+Q    +A   + R   
Sbjct: 1262 FKLPIAIKATLRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRKED 1321

Query: 351  ------LIKRAL---VVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQD 401
                  +  RAL   ++ P +L  HW  E        K+  Y G    T +  L+  L D
Sbjct: 1322 YEKTRSVESRALPSLIICPPSLTGHWENEFDQYAPFLKVVVYAGG--PTVRLTLRPQLSD 1379

Query: 402  KGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEI 461
              +++T+YD+ RN+   L  + +            +Y +LDEGH+IKN  ++ AK++ EI
Sbjct: 1380 ADIIVTSYDVARNDLAVLNKTEY------------NYCVLDEGHIIKNSQSKLAKAVKEI 1427

Query: 462  PSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKR 521
             + HR+I++GTPIQNN+ ELW+LF+F  P  LG  K F+E++  PI    +     +E+ 
Sbjct: 1428 TANHRLILTGTPIQNNVLELWSLFDFLMPGFLGTEKMFQERFAKPIAASRNSKTSSKEQE 1487

Query: 522  IGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAF 581
             G    + L +++ P+ LRRLK +V  +        L  K     +  L   Q+QLY  F
Sbjct: 1488 AGVLALEALHKQVLPFMLRRLKEDVLSD--------LPPKIIQDYYCELGDLQKQLYMDF 1539

Query: 582  LNSE--IVLSAFDGSPLA--------ALTILKKICDHPLLLTKRAAEDVLDGMDSM---- 627
               +  +V    + S +A        AL  ++K+C+HP L+       +    D +    
Sbjct: 1540 TKKQKNVVEKDIENSEIADGKQHIFQALQYMRKLCNHPALVLSPNHPQLAQVQDYLKQTG 1599

Query: 628  LNPEDAALAEKLA-----MHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLI 682
            L+  D   A KL+     +    + E+D  ++   + +  I  ++S         H  LI
Sbjct: 1600 LDLHDIINAPKLSALRTLLFECGIGEEDIDKKASQDQNFPIQNVIS--------QHRALI 1651

Query: 683  FSQTRKMLNLIQESIGSK---GYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVG 739
            F Q + ML++++  +  K      ++R+DG+    DR K+V  F E       LLT++VG
Sbjct: 1652 FCQLKDMLDMVENDLFKKYMPSVTYMRLDGSIDPRDRQKVVRKFNEDPSIDCLLLTTKVG 1711

Query: 740  GLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQI 799
            GLGL LT AD VI V+  WNP  D Q++DRA+RIGQKK V VYR++T GT+EEKI   Q 
Sbjct: 1712 GLGLNLTGADTVIFVEHDWNPMNDLQAMDRAHRIGQKKVVNVYRIITKGTLEEKIMGLQK 1771

Query: 800  FKGGLFKTATEHKEQIRYFSQQDLRELLSL 829
            FK  +  T     +Q    +  D  +LL L
Sbjct: 1772 FKMNIASTVV--NQQNSGLASMDTHQLLDL 1799


>sp|Q9DG67|RA54B_CHICK DNA repair and recombination protein RAD54B OS=Gallus gallus
           GN=RAD54B PE=2 SV=1
          Length = 918

 Score =  261 bits (668), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 184/553 (33%), Positives = 287/553 (51%), Gaps = 52/553 (9%)

Query: 300 IGNMLFPHQREGLRWLW----SLHCQGK-GGILGDDMGLGKTMQICGFL-----AGLFHS 349
           I N L PHQREG+ +L+     +   G+ G IL D+MGLGKT+Q    +      G++  
Sbjct: 299 IANNLRPHQREGIVFLYECVMGMRVSGRFGAILADEMGLGKTLQCISLVWTLLRQGVYGC 358

Query: 350 R-LIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTT 408
           + ++KRAL+V P +L+ +W KE      S +I+ +  T  +  + E         V++ +
Sbjct: 359 KPVLKRALIVTPGSLVKNWKKEFQKWLGSERIKVF--TVDQDHKVEEFISSPLYSVMIIS 416

Query: 409 YDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRII 468
           Y+++  +   ++   F            + +I DEGH +KN S +   +L  +    RII
Sbjct: 417 YEMLLRSLDQIQAIEF------------NLLICDEGHRLKNSSIKTTTALTNLSCERRII 464

Query: 469 ISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAK 528
           ++GTPIQN+L+E +AL  F  P +LG    +++ YE PI+R  +  A   EK +G   A 
Sbjct: 465 LTGTPIQNDLQEFYALIEFVNPGVLGSLSTYRKIYEEPIVRSREPSATKEEKDLGEKRAA 524

Query: 529 ELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVL 588
           EL  R+   F+ R   EV ++        L  K E I++ + T+ Q +LY   L+S ++ 
Sbjct: 525 EL-TRLTGLFILRRTQEVINK-------FLPPKKENIIFCQPTALQLELYRKLLSSRVIS 576

Query: 589 SAFDG----SP-LAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHI 643
           S   G    SP L  +  LKK+C+HP LL K   E   D         D  +   L   +
Sbjct: 577 SCLQGRLENSPHLICIGALKKLCNHPCLLFKALKEKCCDPKS------DEHVESSLYEGL 630

Query: 644 ADVAEKDDFQEQHDNI-SCKISFILSLLDKL--IPEGHNVLIFSQTRKMLNLIQESIGSK 700
            DV  +D   +    I S K+  ++ LL  +  +     V++ S   + LN++ E+    
Sbjct: 631 TDVFPQDYTSDTFSEIDSGKLQVLVKLLAAIRELSSSERVVLVSNYTQTLNVLLETCKCY 690

Query: 701 GYKFLRIDGTTKASDRVKIVNDFQEG-DVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWN 759
           GY + R+DG T  S R +IV+ F      A IFLL+S+ GG+GL L  A  +I+ D  WN
Sbjct: 691 GYSYTRLDGNTPVSQRQQIVDSFNSKFSPAFIFLLSSKAGGVGLNLVGASHLILYDIDWN 750

Query: 760 PSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK---GGLFKTATEHKEQIR 816
           P+TD Q++ R +R GQK  V +YRL+T GT+EEKIY++QI K    G     ++  E I 
Sbjct: 751 PATDIQAMARVWRDGQKCTVHIYRLLTTGTIEEKIYQRQISKQDLSGAVVDLSKTSEHI- 809

Query: 817 YFSQQDLRELLSL 829
           +FS ++LR L +L
Sbjct: 810 HFSVEELRNLFTL 822


>sp|O43065|MOT1_SCHPO Probable helicase mot1 OS=Schizosaccharomyces pombe (strain 972 /
            ATCC 24843) GN=mot1 PE=1 SV=4
          Length = 1953

 Score =  259 bits (661), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 182/564 (32%), Positives = 281/564 (49%), Gaps = 80/564 (14%)

Query: 293  TYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSR-- 350
             + +P  I   L  +Q+EG+ WL  L+     GIL DDMGLGKT+Q    +A   ++R  
Sbjct: 1347 AFSIPVPISADLRKYQQEGVNWLAFLNKYELHGILCDDMGLGKTLQTICIVASDHYNRQK 1406

Query: 351  LIKRA----------LVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQ 400
            L + +          L+V P TL  HW +EL+      K+  Y G      + +++  ++
Sbjct: 1407 LFEESGSPKFAHVPSLIVCPSTLAGHWQQELSTYAPFLKVSAYVGP--PAERAKIRSKMK 1464

Query: 401  DKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLE 460
               V++T+YDI RN+           DE    D  W+Y +LDEGH+IKN   +  K++  
Sbjct: 1465 KSDVVVTSYDICRNDV----------DELVKID--WNYCVLDEGHVIKNARAKLTKAVKS 1512

Query: 461  IPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREK 520
            + S HR+I+SGTPIQNN+ ELW+LF+F  P  LG  K F+E++  PI    D  +  +E+
Sbjct: 1513 LRSYHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKTFQERFVRPIAASRDAKSSSKER 1572

Query: 521  RIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEA 580
              G+   + + +++ P+ LRRLK +V         A L  K     +  ++  QR+L   
Sbjct: 1573 ERGTLALEAIHKQVLPFMLRRLKEDVL--------ADLPPKIIQDYYCDMSDLQRKLLND 1624

Query: 581  FLNSEIVLSAFD-----------------GSPLAALTILKKICDHP-LLLTKRAAEDVLD 622
            F++   +    +                      AL  ++K+C+HP L+LT++       
Sbjct: 1625 FVSQLNINEELEDDETEKTQGTRKKKSQKAHIFQALQYMRKLCNHPALILTEK------- 1677

Query: 623  GMDSMLNPEDAALAEKLA-----MHIADVAEKDDFQEQ------HDNISCKISFILSLLD 671
                  +P+  A+ ++LA     +H    A K     Q        N S   + I S L 
Sbjct: 1678 ------HPKRNAIVKQLAKENSGLHDLKHAPKLTALGQLLRDCGLGNSSVNSNGIDSALT 1731

Query: 672  KLIPEGHNVLIFSQTRKMLNLIQESI---GSKGYKFLRIDGTTKASDRVKIVNDFQEGDV 728
              + E H VLIF Q + ML+++++ +         ++R+DG+ + + R + V  F     
Sbjct: 1732 NAVSE-HRVLIFCQLKDMLDMVEKDLLQATMPDVTYMRLDGSVEPTKRQEAVTKFNNDPS 1790

Query: 729  APIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCG 788
              + LLT+ VGGLGL LT AD VI V+  WNP  D Q++DRA+RIGQKK V VYRL+T G
Sbjct: 1791 IDVLLLTTHVGGLGLNLTGADTVIFVEHDWNPMRDLQAMDRAHRIGQKKVVNVYRLITRG 1850

Query: 789  TVEEKIYRKQIFKGGLFKTATEHK 812
             +EEKI   Q FK  +  T    +
Sbjct: 1851 CLEEKIMGLQRFKMNVASTVVNQQ 1874


>sp|P41410|RAD54_SCHPO DNA repair protein rhp54 OS=Schizosaccharomyces pombe (strain 972 /
           ATCC 24843) GN=rhp54 PE=1 SV=2
          Length = 852

 Score =  256 bits (654), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 177/563 (31%), Positives = 290/563 (51%), Gaps = 72/563 (12%)

Query: 299 KIGNMLFPHQREGLRWLWSL------HCQGKGGILGDDMGLGKTMQICGFLAGLFHSR-- 350
           K+  +L PHQ EG+++L+         C   G I+ D+MGLGKT+Q    L  L      
Sbjct: 259 KLARILRPHQIEGVKFLYKCVTGRIDRC-ANGCIMADEMGLGKTLQCIALLWTLLKQSPQ 317

Query: 351 ----LIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQD----- 401
                I++A++  P +L+ +W  EL    L       F    K+ + EL   LQ      
Sbjct: 318 AGKPTIEKAIITCPSSLVKNWANELVK-WLGKDAITPFILDGKSSKQELIMALQQWASVH 376

Query: 402 -----KGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAK 456
                + VL+ +Y+ +R+  + L  +     E G        ++ DEGH +KN  +    
Sbjct: 377 GRQVTRPVLIASYETLRSYVEHLNNA-----EIG-------MLLCDEGHRLKNSDSLTFT 424

Query: 457 SLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHAL 516
           +L ++    R+I+SGTPIQN+L E ++L NF  P LLG  + F++ YE+PIL+G D    
Sbjct: 425 ALDKLNVQRRVILSGTPIQNDLSEYFSLLNFANPGLLGSRQEFRKNYEIPILKGRDADGT 484

Query: 517 DREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQ 576
           +++K  G A   EL + +  + +RR  N++        S  L  K E +V+  L+  Q  
Sbjct: 485 EKDKENGDAKLAELAKIVNRFIIRR-TNDIL-------SKYLPVKYEHVVFCNLSEFQLS 536

Query: 577 LYEAFLNS-EI--VLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDA 633
           LY+ F+ S EI  +L      PL A+ +LKKIC+HP LL     ED L+G +++  P   
Sbjct: 537 LYKHFITSPEINKILRGTGSQPLKAIGLLKKICNHPDLLN--LTED-LEGCEALFPPGFI 593

Query: 634 ALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPE-----GHNVLIFSQTRK 688
                            + + +  NI   +S  + +L++++ +        +++ S    
Sbjct: 594 P---------------RELRGRDRNIDSSLSGKMLVLERMLYQIKQETDDKIVLISNYTS 638

Query: 689 MLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDV-APIFLLTSQVGGLGLTLTK 747
            L+L ++   ++GYK LR+DGT   + R ++V+ F + +  A +FLL+S+ GG G+ L  
Sbjct: 639 TLDLFEQLCRARGYKALRLDGTMNVNKRQRLVDTFNDPEKDAFVFLLSSKAGGCGINLIG 698

Query: 748 ADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKT 807
           A+R+I+ DP WNP+ D Q++ R +R GQKKD  VYR +  GT+EEKI+++Q  K  L   
Sbjct: 699 ANRLILFDPDWNPAADQQALARVWRDGQKKDCFVYRFIATGTIEEKIFQRQSHKQSLSSC 758

Query: 808 ATEHKEQI-RYFSQQDLRELLSL 829
             +  + + R+FS  +LR+L  L
Sbjct: 759 VVDEAQDVERHFSLDNLRQLFQL 781


>sp|Q9JIM3|RAD26_MOUSE Putative DNA repair and recombination protein RAD26-like OS=Mus
           musculus GN=Rad26l PE=2 SV=2
          Length = 699

 Score =  253 bits (646), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 180/588 (30%), Positives = 279/588 (47%), Gaps = 103/588 (17%)

Query: 296 LPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFH------- 348
           +P  I   L  +QREG ++L+  + +G+G ILGDDMGLGKT+Q+  FLA + H       
Sbjct: 114 IPYTINRYLRDYQREGAQFLYRHYIEGRGCILGDDMGLGKTIQVISFLAAVLHKKGTRED 173

Query: 349 ------------------SRLIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCV-- 388
                             S   K  L+VAP ++L +W  EL   G       YF   V  
Sbjct: 174 IENNMPEFLLKSMKKKPPSTAKKMFLIVAPLSVLYNWKDELDTWG-------YFRVTVLH 226

Query: 389 -KTRQYELQYVLQDKG-VLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHL 446
              +  EL  + Q K  + LTTY+ +R   + L            +   W  +I+DE H 
Sbjct: 227 GSKKDNELLRLKQRKCEIALTTYETLRLCLEEL------------NSLEWSAIIVDEAHR 274

Query: 447 IKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELP 506
           IKNP  +  + +  +    RI ++GT +QNN+KELW + ++  P LLG    FK+++  P
Sbjct: 275 IKNPKARVTEVMKAVKCKVRIGLTGTVLQNNMKELWCVMDWAVPGLLGSRIHFKKQFSDP 334

Query: 507 ILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIV 566
           +  G    A  RE   G      L +++  +FLRR K  +           L KK + +V
Sbjct: 335 VEHGQRHTATKRELATGRKAMHRLAKKMSGWFLRRTKTLI--------KGQLPKKEDRMV 386

Query: 567 WLRLTSCQRQLYEAFLNSE-IVLSAFDGSP---------------------------LAA 598
           +  LT  Q+ +Y+  L +E + L      P                           L+ 
Sbjct: 387 YCSLTDFQKAVYQTVLETEDVALILTSSQPCTCGSGQKRRKCCYKTNSRGDTVRTLCLSY 446

Query: 599 LTILKKICDHPLLL----TKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDD--- 651
           LT+L+K+ +H  LL    T +  E V+             + +++     D  +K     
Sbjct: 447 LTVLQKVANHVALLQAASTSKHQETVIK-----------RICDRVFSRFPDFVQKSKDAA 495

Query: 652 FQEQHD-NISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGT 710
           F+   D   S K+  +  LL+    +   VL+FS + K+L+++Q+   + G  + R+DG+
Sbjct: 496 FETLSDPKYSGKMKVLQQLLNHFRKQRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGS 555

Query: 711 TKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRA 770
           TK+ +R+KIV +F       I L+++  GGLGL    A+ VI+ DP WNP+ D Q+VDRA
Sbjct: 556 TKSEERLKIVKEFNSSQDVNICLVSTMAGGLGLNFVGANVVILFDPTWNPANDLQAVDRA 615

Query: 771 YRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYF 818
           YRIGQ +DV V RL++ GTVEE +Y +Q++K  L       +   RYF
Sbjct: 616 YRIGQCRDVKVLRLISLGTVEEIMYLRQVYKQQLHCVVVGSENAKRYF 663


>sp|Q5T890|RAD26_HUMAN Putative DNA repair and recombination protein RAD26-like OS=Homo
           sapiens GN=RAD26L PE=1 SV=1
          Length = 712

 Score =  253 bits (645), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 180/585 (30%), Positives = 278/585 (47%), Gaps = 96/585 (16%)

Query: 296 LPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFH------- 348
           +P  I   L  +QREG R+L+  +  G G ILGDDMGLGKT+Q+  FLA + H       
Sbjct: 126 IPYTINRYLRDYQREGTRFLYGHYIHGGGCILGDDMGLGKTVQVISFLAAVLHKKGTRED 185

Query: 349 -------------------SRLIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCV- 388
                              S   K  L+VAP ++L +W  EL   G       YF   V 
Sbjct: 186 IENNMPEFLLRSMKKEPLSSTAKKMFLIVAPLSVLYNWKDELDTWG-------YFRVTVL 238

Query: 389 --KTRQYELQYVLQDKG-VLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGH 445
               +  EL  V Q K  + LTTY+ +R             DE    +  W  +I+DE H
Sbjct: 239 HGNRKDNELIRVKQRKCEIALTTYETLR----------LCLDELNSLE--WSAVIVDEAH 286

Query: 446 LIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYEL 505
            IKNP  +  + +  +    RI ++GT +QNN+KELW + ++  P LLG   +FK+++  
Sbjct: 287 RIKNPKARVTEVMKALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSGTYFKKQFSD 346

Query: 506 PILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMI 565
           P+  G    A  RE   G    + L +++  +FLRR K  +  +        L KK + +
Sbjct: 347 PVEHGQRHTATKRELATGRKAMQRLAKKMSGWFLRRTKTLIKDQ--------LPKKEDRM 398

Query: 566 VWLRLTSCQRQLYEAFLNSEIVLSAFDGSP----------------------------LA 597
           V+  LT  Q+ +Y+  L +E V      S                             L+
Sbjct: 399 VYCSLTDFQKAVYQTVLETEDVTLILQSSEPCTCRSGQKRRNCCYKTNSHGETVKTLYLS 458

Query: 598 ALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDD---FQE 654
            LT+L+K+ +H  LL    A       ++++      + +++     D  +K     F+ 
Sbjct: 459 YLTVLQKVANHVALL---QAASTSKQQETLIK----RICDQVFSRFPDFVQKSKDAAFET 511

Query: 655 QHD-NISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKA 713
             D   S K+  +  LL+        VL+FS + K+L+++Q+   + G  + R+DG+TK+
Sbjct: 512 LSDPKYSGKMKVLQQLLNHCRKNRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKS 571

Query: 714 SDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRI 773
            +R+KIV +F       I L+++  GGLGL    A+ V++ DP WNP+ D Q++DRAYRI
Sbjct: 572 EERLKIVKEFNSTQDVNICLVSTMAGGLGLNFVGANVVVLFDPTWNPANDLQAIDRAYRI 631

Query: 774 GQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYF 818
           GQ +DV V RL++ GTVEE +Y +QI+K  L       +   RYF
Sbjct: 632 GQCRDVKVLRLISLGTVEEIMYLRQIYKQQLHCVVVGSENAKRYF 676


>sp|P51532|SMCA4_HUMAN Transcription activator BRG1 OS=Homo sapiens GN=SMARCA4 PE=1 SV=2
          Length = 1647

 Score =  251 bits (641), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 174/545 (31%), Positives = 265/545 (48%), Gaps = 70/545 (12%)

Query: 300  IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLF-HSRLIKRALVV 358
            +  +L  +Q +GL WL SL+     GIL D+MGLGKT+Q    +  L  H R+    L++
Sbjct: 750  VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLII 809

Query: 359  APKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKS 418
             P + LS+W  E      S     Y G+    R +  Q       VLLTTY+ +      
Sbjct: 810  VPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYI------ 863

Query: 419  LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSL-LEIPSAHRIIISGTPIQNN 477
                  I D+       W YMI+DEGH +KN   +  + L     +  R++++GTP+QN 
Sbjct: 864  ------IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNK 917

Query: 478  LKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPY 537
            L ELWAL NF  P +      F++ +  P     +K  L+ E+ I   + + L + ++P+
Sbjct: 918  LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETI--LIIRRLHKVLRPF 975

Query: 538  FLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSP-- 595
             LRRLK EV         A L +K E ++   +++ QR LY       ++L+  DGS   
Sbjct: 976  LLRRLKKEV--------EAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLT--DGSEKD 1025

Query: 596  ----------LAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIAD 645
                      +  +  L+KIC+HP                 M    + + +E L      
Sbjct: 1026 KKGKGGTKTLMNTIMQLRKICNHPY----------------MFQHIEESFSEHLGFTGGI 1069

Query: 646  VAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFL 705
            V   D ++      S K   +  +L KL    H VL+F Q   ++ ++++    +G+K+L
Sbjct: 1070 VQGLDLYR-----ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYL 1124

Query: 706  RIDGTTKASDRVKIVNDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDN 764
            R+DGTTKA DR  ++  F E G    IFLL+++ GGLGL L  AD VI+ D  WNP  D 
Sbjct: 1125 RLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDL 1184

Query: 765  QSVDRAYRIGQKKDVVVYRLMTCGTVEEKI-----YR----KQIFKGGLFKTATEHKEQI 815
            Q+ DRA+RIGQ+ +V V RL T  +VEEKI     Y+    +++ + G+F   +   E+ 
Sbjct: 1185 QAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHER- 1243

Query: 816  RYFSQ 820
            R F Q
Sbjct: 1244 RAFLQ 1248


>sp|Q3TKT4|SMCA4_MOUSE Transcription activator BRG1 OS=Mus musculus GN=Smarca4 PE=1 SV=1
          Length = 1613

 Score =  251 bits (640), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 174/545 (31%), Positives = 265/545 (48%), Gaps = 70/545 (12%)

Query: 300  IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLF-HSRLIKRALVV 358
            +  +L  +Q +GL WL SL+     GIL D+MGLGKT+Q    +  L  H R+    L++
Sbjct: 750  VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLII 809

Query: 359  APKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKS 418
             P + LS+W  E      S     Y G+    R +  Q       VLLTTY+ +      
Sbjct: 810  VPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYI------ 863

Query: 419  LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSL-LEIPSAHRIIISGTPIQNN 477
                  I D+       W YMI+DEGH +KN   +  + L     +  R++++GTP+QN 
Sbjct: 864  ------IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNK 917

Query: 478  LKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPY 537
            L ELWAL NF  P +      F++ +  P     +K  L+ E+ I   + + L + ++P+
Sbjct: 918  LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETI--LIIRRLHKVLRPF 975

Query: 538  FLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSP-- 595
             LRRLK EV         A L +K E ++   +++ QR LY       ++L+  DGS   
Sbjct: 976  LLRRLKKEV--------EAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLT--DGSEKD 1025

Query: 596  ----------LAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIAD 645
                      +  +  L+KIC+HP                 M    + + +E L      
Sbjct: 1026 KKGKGGTKTLMNTIMQLRKICNHPY----------------MFQHIEESFSEHLGFTGGI 1069

Query: 646  VAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFL 705
            V   D ++      S K   +  +L KL    H VL+F Q   ++ ++++    +G+K+L
Sbjct: 1070 VQGLDLYR-----ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYL 1124

Query: 706  RIDGTTKASDRVKIVNDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDN 764
            R+DGTTKA DR  ++  F E G    IFLL+++ GGLGL L  AD VI+ D  WNP  D 
Sbjct: 1125 RLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDL 1184

Query: 765  QSVDRAYRIGQKKDVVVYRLMTCGTVEEKI-----YR----KQIFKGGLFKTATEHKEQI 815
            Q+ DRA+RIGQ+ +V V RL T  +VEEKI     Y+    +++ + G+F   +   E+ 
Sbjct: 1185 QAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHER- 1243

Query: 816  RYFSQ 820
            R F Q
Sbjct: 1244 RAFLQ 1248


>sp|Q8K1P7|SMCA4_RAT Transcription activator BRG1 OS=Rattus norvegicus GN=Smarca4 PE=1
            SV=1
          Length = 1613

 Score =  251 bits (640), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 174/545 (31%), Positives = 265/545 (48%), Gaps = 70/545 (12%)

Query: 300  IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLF-HSRLIKRALVV 358
            +  +L  +Q +GL WL SL+     GIL D+MGLGKT+Q    +  L  H R+    L++
Sbjct: 750  VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLII 809

Query: 359  APKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKS 418
             P + LS+W  E      S     Y G+    R +  Q       VLLTTY+ +      
Sbjct: 810  VPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYI------ 863

Query: 419  LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSL-LEIPSAHRIIISGTPIQNN 477
                  I D+       W YMI+DEGH +KN   +  + L     +  R++++GTP+QN 
Sbjct: 864  ------IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNK 917

Query: 478  LKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPY 537
            L ELWAL NF  P +      F++ +  P     +K  L+ E+ I   + + L + ++P+
Sbjct: 918  LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETI--LIIRRLHKVLRPF 975

Query: 538  FLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSP-- 595
             LRRLK EV         A L +K E ++   +++ QR LY       ++L+  DGS   
Sbjct: 976  LLRRLKKEV--------EAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLT--DGSEKD 1025

Query: 596  ----------LAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIAD 645
                      +  +  L+KIC+HP                 M    + + +E L      
Sbjct: 1026 KKGKGGTKTLMNTIMQLRKICNHPY----------------MFQHIEESFSEHLGFTGGI 1069

Query: 646  VAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFL 705
            V   D ++      S K   +  +L KL    H VL+F Q   ++ ++++    +G+K+L
Sbjct: 1070 VQGLDLYR-----ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYL 1124

Query: 706  RIDGTTKASDRVKIVNDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDN 764
            R+DGTTKA DR  ++  F E G    IFLL+++ GGLGL L  AD VI+ D  WNP  D 
Sbjct: 1125 RLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDL 1184

Query: 765  QSVDRAYRIGQKKDVVVYRLMTCGTVEEKI-----YR----KQIFKGGLFKTATEHKEQI 815
            Q+ DRA+RIGQ+ +V V RL T  +VEEKI     Y+    +++ + G+F   +   E+ 
Sbjct: 1185 QAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHER- 1243

Query: 816  RYFSQ 820
            R F Q
Sbjct: 1244 RAFLQ 1248


>sp|A7Z019|SMCA4_BOVIN Transcription activator BRG1 OS=Bos taurus GN=SMARCA4 PE=2 SV=1
          Length = 1606

 Score =  251 bits (640), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 174/545 (31%), Positives = 265/545 (48%), Gaps = 70/545 (12%)

Query: 300  IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLF-HSRLIKRALVV 358
            +  +L  +Q +GL WL SL+     GIL D+MGLGKT+Q    +  L  H R+    L++
Sbjct: 742  VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLII 801

Query: 359  APKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKS 418
             P + LS+W  E      S     Y G+    R +  Q       VLLTTY+ +      
Sbjct: 802  VPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYI------ 855

Query: 419  LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSL-LEIPSAHRIIISGTPIQNN 477
                  I D+       W YMI+DEGH +KN   +  + L     +  R++++GTP+QN 
Sbjct: 856  ------IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNK 909

Query: 478  LKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPY 537
            L ELWAL NF  P +      F++ +  P     +K  L+ E+ I   + + L + ++P+
Sbjct: 910  LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETI--LIIRRLHKVLRPF 967

Query: 538  FLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSP-- 595
             LRRLK EV         A L +K E ++   +++ QR LY       ++L+  DGS   
Sbjct: 968  LLRRLKKEV--------EAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLT--DGSEKD 1017

Query: 596  ----------LAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIAD 645
                      +  +  L+KIC+HP                 M    + + +E L      
Sbjct: 1018 KKGKGGTKTLMNTIMQLRKICNHPY----------------MFQHIEESFSEHLGFTGGI 1061

Query: 646  VAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFL 705
            V   D ++      S K   +  +L KL    H VL+F Q   ++ ++++    +G+K+L
Sbjct: 1062 VQGLDLYR-----ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYL 1116

Query: 706  RIDGTTKASDRVKIVNDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDN 764
            R+DGTTKA DR  ++  F E G    IFLL+++ GGLGL L  AD VI+ D  WNP  D 
Sbjct: 1117 RLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDL 1176

Query: 765  QSVDRAYRIGQKKDVVVYRLMTCGTVEEKI-----YR----KQIFKGGLFKTATEHKEQI 815
            Q+ DRA+RIGQ+ +V V RL T  +VEEKI     Y+    +++ + G+F   +   E+ 
Sbjct: 1177 QAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHER- 1235

Query: 816  RYFSQ 820
            R F Q
Sbjct: 1236 RAFLQ 1240


>sp|P25439|BRM_DROME ATP-dependent helicase brm OS=Drosophila melanogaster GN=brm PE=1
            SV=2
          Length = 1638

 Score =  251 bits (640), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 166/546 (30%), Positives = 271/546 (49%), Gaps = 76/546 (13%)

Query: 300  IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLF-HSRLIKRALVV 358
            +   L  +Q +GL WL SL+     GIL D+MGLGKT+Q    +  L    +++   L++
Sbjct: 769  VNGTLKEYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTISLVTYLMDRKKVMGPYLII 828

Query: 359  APKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKS 418
             P + L +W+ E      +  +  Y G+    R  + Q       VLLTTY+ V      
Sbjct: 829  VPLSTLPNWVLEFEKWAPAVGVVSYKGSPQGRRLLQNQMRATKFNVLLTTYEYV------ 882

Query: 419  LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSL-LEIPSAHRIIISGTPIQNN 477
                  I D+A      W YMI+DEGH +KN   +  + L     + +R++++GTP+QN 
Sbjct: 883  ------IKDKAVLAKIQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPYRLLLTGTPLQNK 936

Query: 478  LKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPY 537
            L ELWAL NF  P +      F++ +  P     +K  L+ E+ I   + + L + ++P+
Sbjct: 937  LPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETI--LIIRRLHKVLRPF 994

Query: 538  FLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSP-- 595
             LRRLK EV H+        L  K E I+   +++ QR LY+   +  ++L+  DGS   
Sbjct: 995  LLRRLKKEVEHQ--------LPDKVEYIIKCDMSALQRVLYKHMQSKGVLLT--DGSEKG 1044

Query: 596  ----------LAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIAD 645
                      +  +  L+K+C+HP +                       + EK   H   
Sbjct: 1045 KHGKGGAKALMNTIVQLRKLCNHPFMFQH--------------------IEEKYCDHTGG 1084

Query: 646  ---VAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGY 702
               V+  D ++     +S K   +  +L KL    H VL+F Q  + + +I++ +G + +
Sbjct: 1085 HGVVSGPDLYR-----VSGKFELLDRILPKLKATNHRVLLFCQMTQCMTIIEDYLGWRQF 1139

Query: 703  KFLRIDGTTKASDRVKIVNDFQ-EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPS 761
             +LR+DGTTKA DR +++  F  +G    +FLL+++ GGLGL L  AD V++ D  WNP 
Sbjct: 1140 GYLRLDGTTKAEDRGELLRKFNAKGSDVFVFLLSTRAGGLGLNLQTADTVVIFDSDWNPH 1199

Query: 762  TDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKI-----YR----KQIFKGGLFKTATEHK 812
             D Q+ DRA+RIGQ+ +V V RLMT  +VEE+I     Y+    +++ + G+F   +   
Sbjct: 1200 QDLQAQDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQAGMFDQKSTGS 1259

Query: 813  EQIRYF 818
            E+ ++ 
Sbjct: 1260 ERQQFL 1265


>sp|P38144|ISW1_YEAST ISWI chromatin-remodeling complex ATPase ISW1 OS=Saccharomyces
           cerevisiae (strain ATCC 204508 / S288c) GN=ISW1 PE=1
           SV=2
          Length = 1129

 Score =  250 bits (639), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 168/512 (32%), Positives = 271/512 (52%), Gaps = 78/512 (15%)

Query: 297 PGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGL-FHSRLIKRA 355
           P  +   L P+Q +G+ WL SLH     GIL D+MGLGKT+Q   FL  L +  ++    
Sbjct: 189 PAYVNGQLRPYQIQGVNWLVSLHKNKIAGILADEMGLGKTLQTISFLGYLRYIEKIPGPF 248

Query: 356 LVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYEL---QYVLQDKGVLLTTYDIV 412
           LV+APK+ L++W++E+     +  +  +     K  + EL   + +  D  V++ +Y+I+
Sbjct: 249 LVIAPKSTLNNWLREINR--WTPDVNAFILQGDKEERAELIQKKLLGCDFDVVIASYEII 306

Query: 413 RNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGT 472
                 L+  +            W+Y+I+DE H IKN  +  ++ L E  S +R++I+GT
Sbjct: 307 IREKSPLKKIN------------WEYIIIDEAHRIKNEESMLSQVLREFTSRNRLLITGT 354

Query: 473 PIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRE 532
           P+QNNL ELWAL NF  P++  D + F + +       ++    D++K     + K+L  
Sbjct: 355 PLQNNLHELWALLNFLLPDIFSDAQDFDDWF------SSESTEEDQDK-----IVKQLHT 403

Query: 533 RIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFD 592
            +QP+ LRR+K++V          +L  K E+ +++ ++S Q++ Y+  L  +  L A +
Sbjct: 404 VLQPFLLRRIKSDV--------ETSLLPKKELNLYVGMSSMQKKWYKKILEKD--LDAVN 453

Query: 593 GSP---------LAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHI 643
           GS          L  +  L+K C+HP L          DG            AE    + 
Sbjct: 454 GSNGSKESKTRLLNIMMQLRKCCNHPYL---------FDG------------AEPGPPYT 492

Query: 644 ADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYK 703
            D        E     + K+  +  LL KL  EG  VLIFSQ  ++L+++++    + Y+
Sbjct: 493 TD--------EHLVYNAAKLQVLDKLLKKLKEEGSRVLIFSQMSRLLDILEDYCYFRNYE 544

Query: 704 FLRIDGTTKASDRVKIVNDFQEGDVAP-IFLLTSQVGGLGLTLTKADRVIVVDPAWNPST 762
           + RIDG+T   DR++ ++D+   D    +FLLT++ GGLG+ LT AD V++ D  WNP  
Sbjct: 545 YCRIDGSTAHEDRIQAIDDYNAPDSKKFVFLLTTRAGGLGINLTSADVVVLYDSDWNPQA 604

Query: 763 DNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKI 794
           D Q++DRA+RIGQKK V V+RL+T  +VEEKI
Sbjct: 605 DLQAMDRAHRIGQKKQVKVFRLVTDNSVEEKI 636


>sp|A4PBL4|RAD54_ORYSJ DNA repair and recombination protein RAD54 OS=Oryza sativa subsp.
           japonica GN=RAD54 PE=1 SV=1
          Length = 980

 Score =  250 bits (639), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 182/567 (32%), Positives = 285/567 (50%), Gaps = 73/567 (12%)

Query: 304 LFPHQREGLRWLWS-----LHCQG-KGGILGDDMGLGKTMQICGFLAGL----FHSR-LI 352
           L PHQREG+++++      L+  G  G IL DDMGLGKT+Q    L  L    F ++ ++
Sbjct: 235 LRPHQREGVQFMFDCVSGLLNDDGISGCILADDMGLGKTLQSITLLYTLLCQGFDAKPMV 294

Query: 353 KRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYV------LQDKGVLL 406
           KRA+VV P +L+S+W  E+    L  ++ +    C  TR   L  +      L    VL+
Sbjct: 295 KRAVVVTPTSLVSNWESEIIK-WLKGRV-QLLALCESTRADVLSGIESFLKPLSRLQVLI 352

Query: 407 TTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHR 466
            +Y+  R +S              +     D +I DE H +KN  T   K+L  +P   R
Sbjct: 353 VSYETFRMHSSKF-----------ERPGSCDLLICDEAHRLKNDQTLTNKALAALPCKRR 401

Query: 467 IIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAV 526
           I++SGTP+QN+L+E +++ NF  P +LGD  +F+  YE PI+ G +  A   EK +GS  
Sbjct: 402 ILLSGTPMQNDLEEFFSMVNFTNPGVLGDATYFRRYYEAPIICGREPTASAEEKNLGSER 461

Query: 527 AKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEI 586
           + EL  ++  + LRR         +   S  L  K   +V  +LT+ Q  LY  F++S+ 
Sbjct: 462 SAELSAKVNLFILRR--------TNALLSNHLPPKIVEVVCCKLTALQTALYNHFIHSKN 513

Query: 587 VLSAF-DGSP----LAALTILKKICDHPLLL--TKRAAEDVLDGMDSMLN---PE----- 631
           V     +G+     LA +T LKK+C+HP L+  T ++      G D  L    PE     
Sbjct: 514 VKRLISEGTKQSKVLAYITALKKLCNHPKLIYDTIKSNNSGGSGFDDCLRFFPPELFSGR 573

Query: 632 DAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKL-IPEGHNVLIFSQTRKML 690
             +      M +               +S K+  +  LL  L +     +++ S   + L
Sbjct: 574 SGSWTGGGGMWV--------------ELSGKMHVLARLLGHLRLKTDDRIVLVSNYTQTL 619

Query: 691 NLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAP-IFLLTSQVGGLGLTLTKAD 749
           +L  +    + Y ++R+DG T  + R K+VN F +      +FLL+S+ GG GL L   +
Sbjct: 620 DLFAQLCRERRYPYIRLDGATSINKRQKLVNQFNDPSRDEFVFLLSSKAGGCGLNLVGGN 679

Query: 750 RVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTAT 809
           R+I+ DP WNP+ D Q+  R +R GQKK V +YR ++ GT+EEK+Y++Q+ K GL K   
Sbjct: 680 RLILFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSTGTIEEKVYQRQMSKEGLQKVIQ 739

Query: 810 EH----KEQIRYFSQQDLRELLSLPKQ 832
           +     K Q    S +DLR+L +  +Q
Sbjct: 740 QEQADGKMQGSSLSTEDLRDLFTFHEQ 766


>sp|O94421|SNF22_SCHPO SWI/SNF chromatin-remodeling complex subunit snf22
            OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
            GN=snf22 PE=1 SV=2
          Length = 1680

 Score =  247 bits (630), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 166/519 (31%), Positives = 261/519 (50%), Gaps = 72/519 (13%)

Query: 300  IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVV 358
            +G  L  +Q +GL W+ SL+     GIL D+MGLGKT+Q   F+  L   +  +   L++
Sbjct: 865  VGGTLKDYQLKGLEWMLSLYNNNLNGILADEMGLGKTIQTIAFITYLIEKKNQQGPFLII 924

Query: 359  APKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKS 418
             P + L++WI E      S K   Y G     +  + Q    +  VLLTT++ +      
Sbjct: 925  VPLSTLTNWIMEFEKWAPSVKKIAYKGPPQLRKTLQSQIRSSNFNVLLTTFEYI------ 978

Query: 419  LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSL-LEIPSAHRIIISGTPIQNN 477
                  I D        W +MI+DEGH IKN  ++   +L     S +R+I++GTP+QNN
Sbjct: 979  ------IKDRPLLSRIKWVHMIIDEGHRIKNTQSKLTSTLSTYYHSQYRLILTGTPLQNN 1032

Query: 478  LKELWALFNFCCPELLGDNKWFKEKYELPILR--GNDKHALDREKRIGSAVAKELRERIQ 535
            L ELWAL NF  P++    K F E +  P     G DK  L+ E+ +   + K L + ++
Sbjct: 1033 LPELWALLNFVLPKIFNSIKSFDEWFNTPFANTGGQDKIGLNEEEAL--LIIKRLHKVLR 1090

Query: 536  PYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEA-------FLNSEIVL 588
            P+  RRLK +V  E        L  K E ++   L+  Q +LY+        F++ E   
Sbjct: 1091 PFLFRRLKKDVEKE--------LPDKVEKVIKCPLSGLQLKLYQQMKKHGMLFVDGEKGK 1142

Query: 589  SAFDGSPLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAE 648
            +   G     +  LKKIC+HP +      EDV   +D    P    +             
Sbjct: 1143 TGIKGLQNTVMQ-LKKICNHPFIF-----EDVERAID----PSGTNV------------- 1179

Query: 649  KDDFQEQHDNISCKISFILSLLDKLIPE----GHNVLIFSQTRKMLNLIQESIGSKGYKF 704
                     ++  + +    LLD+++P+    GH  L+F Q  +++ ++++ + SK +K+
Sbjct: 1180 ---------DLLWRAAGKFELLDRILPKLFLTGHKTLMFFQMTQIMTIMEDYLRSKNWKY 1230

Query: 705  LRIDGTTKASDRVKIVNDFQE--GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPST 762
            LR+DG+TK+ DR  ++  F +   DV  IF+L+++ GGLGL L  AD VI+ D  WNP  
Sbjct: 1231 LRLDGSTKSDDRCSLLAQFNDPKSDVY-IFMLSTRAGGLGLNLQTADTVIIFDTDWNPHQ 1289

Query: 763  DNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 801
            D Q+ DRA+RIGQ K+V + RL+T  ++EE I  +  +K
Sbjct: 1290 DLQAQDRAHRIGQTKEVRILRLITEKSIEENILSRAQYK 1328


>sp|G5EDG2|SMRCD_CAEEL SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A containing DEAD/H box 1 homolog
           OS=Caenorhabditis elegans GN=M03C11.8 PE=3 SV=1
          Length = 989

 Score =  246 bits (629), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 180/557 (32%), Positives = 290/557 (52%), Gaps = 61/557 (10%)

Query: 266 LVNVLDDYSDD--SVLEDEGSITLSGPRSTYMLPGKIGNMLFPHQREGLRWLWSLHCQGK 323
           L  +LDD  D   +V +D    T  GP    +L  K G  L  +Q  G++WL  ++ +  
Sbjct: 357 LSRILDDCKDHAHTVTKDFERCT-EGPLQLPLL--KEGCTLHDYQLIGVKWLIMMYNKDL 413

Query: 324 GGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVGLSAKIREY 383
             ILGD+MGLGKT+QI  FL+ L         L+V P + + +WI E      S ++  Y
Sbjct: 414 NAILGDEMGLGKTIQIVAFLSYLKQIGKTGPHLIVVPSSTIENWIGEFHKWCPSIQLLTY 473

Query: 384 FGTCVKTRQYELQYVLQDKG---VLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMI 440
           +G+    R++    V + K    V+LTTY++V + S          D+    +   +Y+I
Sbjct: 474 YGS-QDERKHLRHRVKKQKDHIDVILTTYNMVTSKS---------DDKKFFKNFSLNYVI 523

Query: 441 LDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFK 500
            DEGH++KN  ++R + L+++    +I+++GTP+QNNL EL +L  F   ++   NK+ +
Sbjct: 524 YDEGHMLKNCDSERYRGLMKVKGKKKILLTGTPLQNNLIELISLMYFVLSKVF--NKYCE 581

Query: 501 EKYEL--------PILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDV 552
           +   L        P L   +K AL ++ RI  A A      +QPY LRRLKN+V      
Sbjct: 582 DITHLLQHFKQLGPALDTKNK-ALYQQDRIEEAKAI-----LQPYILRRLKNQVL----- 630

Query: 553 TSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLL 612
               +L  K+E I+ + +   Q+QLY+  + + +  S   G    +L  L++  +HPLL 
Sbjct: 631 ---GSLPSKSEQIIEVEMKKPQKQLYDNIVEA-LQQSEESGDSYGSLMRLRQAANHPLLR 686

Query: 613 TKRAAEDVLDGMDSMLNPEDAALAEKLAMHIA-DVAEKDDFQEQH--DNISCKISFILS- 668
                +  LD +  ML   + A A+K   H++ D+A   D +     +   C   F+L+ 
Sbjct: 687 RSEYTDQKLDKIAKMLCLREKAYADKKWQHVSEDLAWLSDIKIHQLCERFRCTSKFLLNE 746

Query: 669 ----------LLDKLIPE----GHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKAS 714
                      LD ++PE    G  VLIFSQ   ML++++  +  +GY + R+DG T   
Sbjct: 747 QLALKSGKCEQLDVMLPEIQKKGDKVLIFSQFTSMLDILEVYLNIRGYSYKRLDGQTPVL 806

Query: 715 DRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIG 774
           DR +++N+F       +FLL+++ GGLG+ LT A+ +I+ D  +NP  D Q+ DR +R+G
Sbjct: 807 DRQEMINEFNLSKDLFVFLLSTRAGGLGINLTSANHIIIHDIDFNPYNDKQAEDRCHRMG 866

Query: 775 QKKDVVVYRLMTCGTVE 791
           Q+K V V RL++ GTVE
Sbjct: 867 QEKPVHVTRLVSKGTVE 883


>sp|P22082|SNF2_YEAST Transcription regulatory protein SNF2 OS=Saccharomyces cerevisiae
            (strain ATCC 204508 / S288c) GN=SNF2 PE=1 SV=1
          Length = 1703

 Score =  243 bits (621), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 167/545 (30%), Positives = 279/545 (51%), Gaps = 87/545 (15%)

Query: 300  IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVV 358
            +G  L  +Q +GL+W+ SL      GIL D+MGLGKT+Q    L  L+  + I+   LV+
Sbjct: 763  VGGTLKDYQIKGLQWMVSLFNNHLNGILADEMGLGKTIQTISLLTYLYEMKNIRGPYLVI 822

Query: 359  APKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKS 418
             P + LS+W  E      + +   + G+  + +  + +    +  V+LTT++ +      
Sbjct: 823  VPLSTLSNWSSEFAKWAPTLRTISFKGSPNERKAKQAKIRAGEFDVVLTTFEYI------ 876

Query: 419  LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSL-LEIPSAHRIIISGTPIQNN 477
                  I + A      W +MI+DEGH +KN  ++ + +L     + +R+I++GTP+QNN
Sbjct: 877  ------IKERALLSKVKWVHMIIDEGHRMKNAQSKLSLTLNTHYHADYRLILTGTPLQNN 930

Query: 478  LKELWALFNFCCPELLGDNKWFKEKYELPILR--GNDKHALDREKRIGSAVAKELRERIQ 535
            L ELWAL NF  P++    K F E +  P     G DK  L  E+ +   V + L + ++
Sbjct: 931  LPELWALLNFVLPKIFNSVKSFDEWFNTPFANTGGQDKIELSEEETL--LVIRRLHKVLR 988

Query: 536  PYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFL-----------NS 584
            P+ LRRLK +V  E        L  K E +V  ++++ Q+ +Y+  L           N 
Sbjct: 989  PFLLRRLKKDVEKE--------LPDKVEKVVKCKMSALQQIMYQQMLKYRRLFIGDQNNK 1040

Query: 585  EIV-LSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHI 643
            ++V L  F+      +  LKKIC+HP          V + ++  +NP             
Sbjct: 1041 KMVGLRGFNNQ----IMQLKKICNHPF---------VFEEVEDQINPT------------ 1075

Query: 644  ADVAEKDDFQEQHDNISCKISFILSLLDKLIPE----GHNVLIFSQTRKMLNLIQESIGS 699
                     +E +D+I  +++    LLD+++P+    GH VLIF Q  ++++++++ +  
Sbjct: 1076 ---------RETNDDI-WRVAGKFELLDRILPKLKATGHRVLIFFQMTQIMDIMEDFLRY 1125

Query: 700  KGYKFLRIDGTTKASDRVKIVNDFQEGDVAPI-FLLTSQVGGLGLTLTKADRVIVVDPAW 758
               K+LR+DG TK+ +R +++  F   D   + F+L+++ GGLGL L  AD VI+ D  W
Sbjct: 1126 INIKYLRLDGHTKSDERSELLRLFNAPDSEYLCFILSTRAGGLGLNLQTADTVIIFDTDW 1185

Query: 759  NPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKI----YRK-----QIFKGGLFKTAT 809
            NP  D Q+ DRA+RIGQK +V + RL+T  +VEE I    Y+K     ++ + G F   +
Sbjct: 1186 NPHQDLQAQDRAHRIGQKNEVRILRLITTNSVEEVILERAYKKLDIDGKVIQAGKFDNKS 1245

Query: 810  EHKEQ 814
              +EQ
Sbjct: 1246 TSEEQ 1250


>sp|P43610|IRC5_YEAST Uncharacterized ATP-dependent helicase IRC5 OS=Saccharomyces
           cerevisiae (strain ATCC 204508 / S288c) GN=IRC5 PE=3
           SV=2
          Length = 853

 Score =  243 bits (621), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 169/550 (30%), Positives = 267/550 (48%), Gaps = 71/550 (12%)

Query: 303 MLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKT 362
           +L P+Q EGL WL +L+  G  GIL D+MGLGKT+Q    LA ++        LV AP +
Sbjct: 221 ILKPYQLEGLNWLITLYENGLNGILADEMGLGKTVQSIALLAFIYEMDTKGPFLVTAPLS 280

Query: 363 LLSHWIKELTAVGLSAKIREYFGTC-VKTRQYELQYVLQD---KGVLLTTYDIVRNNSKS 418
            L +W+ E         + +Y+GT   K R  +L+   +     G+++T+Y+I+      
Sbjct: 281 TLDNWMNEFAKFAPDLPVLKYYGTNGYKERSAKLKNFFKQHGGTGIVITSYEII------ 334

Query: 419 LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNL 478
           LR +  I  +       W ++I+DEGH +KN + +  K L +I +++R++++GTP+QNNL
Sbjct: 335 LRDTDLIMSQN------WKFLIVDEGHRLKNINCRLIKELKKINTSNRLLLTGTPLQNNL 388

Query: 479 KELWALFNFCCPELLGD----NKWFKEKYELPILRGNDKHALDR--EKRIGSAVAKELRE 532
            ELW+L NF  P++  D    NKWF +   L +  G++  AL++     +   +   L  
Sbjct: 389 AELWSLLNFIMPDIFADFEIFNKWF-DFDSLNLGSGSNSEALNKLINDELQKNLISNLHT 447

Query: 533 RIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFD 592
            ++P+ LRRLK  V        +  L  K E I+   +TS Q + Y+A LN ++  + F 
Sbjct: 448 ILKPFLLRRLKKVVL-------ANILPPKREYIINCPMTSAQEKFYKAGLNGKLKKTMFK 500

Query: 593 GSPLAALTILKKICDHPLLLTKRAAEDVLD---------GMDSMLNPE----DAALAEKL 639
                  T+  +   H   ++ R+  D ++           D+ +NP     D    + L
Sbjct: 501 ELIKDFFTLNDEYIGH---VSNRSIRDFINYKLSGNETSNTDNKINPTLLQMDKLYKKNL 557

Query: 640 AMHIADVAEKDDFQEQHDNISCKISFI--------------------LSLLDKLIP---- 675
            M I++   ++   +    I     F                     L +L KLIP    
Sbjct: 558 QMEISNKKLQNMMMQLRQIIDSTFLFYFPYLHPEDLTLETLLKTSGKLQILQKLIPPLIS 617

Query: 676 EGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEG-DVAPIFLL 734
           EGH VLI+SQ   ML+LI++      +   RIDG+     R   +  F    D   IFLL
Sbjct: 618 EGHKVLIYSQFVNMLDLIEDWCDLNSFATFRIDGSVNNETRKDQLEKFNSSKDKHNIFLL 677

Query: 735 TSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKI 794
           +++  GLG+ L  AD V++ D  WNP  D Q++DR +RIGQ+  V+VYRL    T+E  I
Sbjct: 678 STRAAGLGINLVGADTVVLFDSDWNPQVDLQAMDRCHRIGQESPVIVYRLCCDNTIEHVI 737

Query: 795 YRKQIFKGGL 804
             +   K  L
Sbjct: 738 LTRAANKRNL 747


>sp|Q9UTN6|SNF21_SCHPO Chromatin structure-remodeling complex subunit snf21
           OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
           GN=snf21 PE=1 SV=1
          Length = 1199

 Score =  243 bits (620), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 168/514 (32%), Positives = 251/514 (48%), Gaps = 61/514 (11%)

Query: 300 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHS-RLIKRALVV 358
           +G  L  +Q  GL+W+ SL+     GIL D+MGLGKT+Q    +  L    R     LV+
Sbjct: 413 VGGKLKEYQLRGLQWMISLYNNHLNGILADEMGLGKTIQTISLITHLIEKKRQNGPFLVI 472

Query: 359 APKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKS 418
            P + L++W  E      S     Y G     +    Q    +  VLLTTY+ +      
Sbjct: 473 VPLSTLTNWTMEFERWAPSIVKIVYKGPPQVRKALHPQVRHSNFQVLLTTYEYI------ 526

Query: 419 LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSA-HRIIISGTPIQNN 477
                 I D        W YMI+DEGH +KN  ++   +L    S+ +R+I++GTP+QNN
Sbjct: 527 ------IKDRPLLSRIKWIYMIIDEGHRMKNTQSKLTNTLTTYYSSRYRLILTGTPLQNN 580

Query: 478 LKELWALFNFCCPELLGDNKWFKEKYELPILR--GNDKHALDREKRIGSAVAKELRERIQ 535
           L ELWAL NF  P +    K F E +  P     G DK  L  E+ +   V + L + ++
Sbjct: 581 LPELWALLNFVLPRIFNSIKSFDEWFNTPFANTGGQDKMELTEEESL--LVIRRLHKVLR 638

Query: 536 PYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLY-----EAFLNSEIVLSA 590
           P+ LRRLK +V         A L  K E ++  +++  Q++LY        L  E     
Sbjct: 639 PFLLRRLKKDV--------EAELPDKVEKVIRCQMSGLQQKLYYQMKKHGMLYVEDAKRG 690

Query: 591 FDGSPLAALTI--LKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAE 648
             G      T+  LKKIC+HP +      EDV   +D      D                
Sbjct: 691 KTGIKGLQNTVMQLKKICNHPFVF-----EDVERSIDPTGFNYDMLW------------- 732

Query: 649 KDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRID 708
                     +S K   +  +L KL   GH +L+F Q  +++N++++ +  + +++LR+D
Sbjct: 733 ---------RVSGKFELLDRILPKLFRSGHRILMFFQMTQIMNIMEDYLHYRQWRYLRLD 783

Query: 709 GTTKASDRVKIVNDFQEGDV-APIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSV 767
           G+TKA DR K++  F +      +FLL+++ GGLGL L  AD VI+ D  WNP  D Q+ 
Sbjct: 784 GSTKADDRSKLLGVFNDPTAEVNLFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQ 843

Query: 768 DRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 801
           DRA+RIGQ K+V +YRL+T  +VEE I  +  +K
Sbjct: 844 DRAHRIGQTKEVRIYRLITEKSVEENILARAQYK 877


>sp|O12944|RAD54_CHICK DNA repair and recombination protein RAD54-like (Fragment)
           OS=Gallus gallus GN=RAD54L PE=2 SV=1
          Length = 733

 Score =  243 bits (619), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 169/556 (30%), Positives = 283/556 (50%), Gaps = 63/556 (11%)

Query: 300 IGNMLFPHQREGLRWLWSLHCQGK-----GGILGDDMGLGKTMQICGFLAGLFHSRL--- 351
           +  +L PHQREG+++LW      +     G I+ D+MGLGKT+Q    +  L        
Sbjct: 138 LSRVLRPHQREGVKFLWDCVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPDCK 197

Query: 352 --IKRALVVAPKTLLSHWIKELTAVGLSAKIREYF--GTCVKTRQYELQYVLQDKG---- 403
             I++A+VV+P +L+ +W  E+    L  +I+     G   +    +L   +  +G    
Sbjct: 198 PEIEKAMVVSPSSLVRNWYNEVEK-WLGGRIQPLAIDGGSKEEIDRKLVGSMNQRGLRVP 256

Query: 404 --VLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEI 461
             +L+ +Y+  R ++++L+  S               +I DEGH +KN   Q  ++L  +
Sbjct: 257 SPILIISYETFRLHAEALQKGSV------------GLVICDEGHRLKNSENQTYQALNSL 304

Query: 462 PSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKR 521
            +  R++ISGTPIQN+L E ++L +F    +LG  + FK  +ELPIL+G D  A + E++
Sbjct: 305 NTPRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKRHFELPILKGRDADASEAERQ 364

Query: 522 IGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAF 581
            G    KEL   +    +RR  + +        S  L  K E +V  RLT  Q +LY+ F
Sbjct: 365 KGEERLKELISIVNRCLIRRTSDIL--------SKYLPVKIEQVVCCRLTPLQAELYKNF 416

Query: 582 LNS-----EIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALA 636
           L       E+     + S L+++T LKK+C+HP L+  +  E            E+    
Sbjct: 417 LKQAKPVEELKEGKINVSSLSSITSLKKLCNHPALIYDKCVE------------EEEGFM 464

Query: 637 EKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQES 696
             L +  A  + K   + Q       + +IL++          V++ S   + L+L ++ 
Sbjct: 465 GALDLFPAGYSTKS-VEPQLSGKMLVLDYILAVTKST--SNDKVVLVSNYTQTLDLFEKL 521

Query: 697 IGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAP--IFLLTSQVGGLGLTLTKADRVIVV 754
             ++ Y ++R+DGT     R K+V  F     +P  IF+L+S+ GG GL L  A+R+++ 
Sbjct: 522 CRNRRYLYVRLDGTMSIKKRAKVVERFNSPS-SPEFIFMLSSKAGGCGLNLIGANRLVMF 580

Query: 755 DPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQ 814
           DP WNP+ D Q++ R +R GQKK   +YRL++ GT+EEKI+++Q  K  L     + ++ 
Sbjct: 581 DPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKIFQRQTHKKALSSCVVDEEQD 640

Query: 815 I-RYFSQQDLRELLSL 829
           + R+FS  +L+EL SL
Sbjct: 641 VERHFSLGELKELFSL 656


>sp|P51531|SMCA2_HUMAN Probable global transcription activator SNF2L2 OS=Homo sapiens
            GN=SMARCA2 PE=1 SV=2
          Length = 1590

 Score =  243 bits (619), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 170/545 (31%), Positives = 261/545 (47%), Gaps = 70/545 (12%)

Query: 300  IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLF-HSRLIKRALVV 358
            I   L  +Q +GL W+ SL+     GIL D+MGLGKT+Q    +  L  H RL    L++
Sbjct: 720  INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLII 779

Query: 359  APKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKS 418
             P + LS+W  E      S     Y GT    R    Q       VLLTTY+ +      
Sbjct: 780  VPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYI------ 833

Query: 419  LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSL-LEIPSAHRIIISGTPIQNN 477
                  I D+       W YMI+DEGH +KN   +  + L     +  RI+++GTP+QN 
Sbjct: 834  ------IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNK 887

Query: 478  LKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPY 537
            L ELWAL NF  P +      F++ +  P     ++  L+ E+ I   + + L + ++P+
Sbjct: 888  LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETI--LIIRRLHKVLRPF 945

Query: 538  FLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSP-- 595
             LRRLK EV         + L +K E ++   +++ Q+ LY       I+L+  DGS   
Sbjct: 946  LLRRLKKEV--------ESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLT--DGSEKD 995

Query: 596  ----------LAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIAD 645
                      +  +  L+KIC+HP                 M    + + AE L      
Sbjct: 996  KKGKGGAKTLMNTIMQLRKICNHPY----------------MFQHIEESFAEHLGYSNGV 1039

Query: 646  VAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFL 705
            +   + ++      S K   +  +L KL    H VL+F Q   ++ ++++    + + +L
Sbjct: 1040 INGAELYR-----ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYL 1094

Query: 706  RIDGTTKASDRVKIVNDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDN 764
            R+DGTTK+ DR  ++  F E G    IFLL+++ GGLGL L  AD V++ D  WNP  D 
Sbjct: 1095 RLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDL 1154

Query: 765  QSVDRAYRIGQKKDVVVYRLMTCGTVEEKI-----YR----KQIFKGGLFKTATEHKEQI 815
            Q+ DRA+RIGQ+ +V V RL T  +VEEKI     Y+    +++ + G+F   +   E+ 
Sbjct: 1155 QAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHER- 1213

Query: 816  RYFSQ 820
            R F Q
Sbjct: 1214 RAFLQ 1218


>sp|Q6DIC0|SMCA2_MOUSE Probable global transcription activator SNF2L2 OS=Mus musculus
            GN=Smarca2 PE=1 SV=1
          Length = 1577

 Score =  242 bits (618), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 170/545 (31%), Positives = 261/545 (47%), Gaps = 70/545 (12%)

Query: 300  IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLF-HSRLIKRALVV 358
            I   L  +Q +GL W+ SL+     GIL D+MGLGKT+Q    +  L  H RL    L++
Sbjct: 725  INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLII 784

Query: 359  APKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKS 418
             P + LS+W  E      S     Y GT    R    Q       VLLTTY+ +      
Sbjct: 785  VPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYI------ 838

Query: 419  LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSL-LEIPSAHRIIISGTPIQNN 477
                  I D+       W YMI+DEGH +KN   +  + L     +  RI+++GTP+QN 
Sbjct: 839  ------IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNK 892

Query: 478  LKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPY 537
            L ELWAL NF  P +      F++ +  P     ++  L+ E+ I   + + L + ++P+
Sbjct: 893  LPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETI--LIIRRLHKVLRPF 950

Query: 538  FLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSP-- 595
             LRRLK EV         + L +K E ++   +++ Q+ LY       I+L+  DGS   
Sbjct: 951  LLRRLKKEV--------ESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLT--DGSEKD 1000

Query: 596  ----------LAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIAD 645
                      +  +  L+KIC+HP                 M    + + AE L      
Sbjct: 1001 KKGKGGAKTLMNTIMQLRKICNHPY----------------MFQHIEESFAEHLGYSNGV 1044

Query: 646  VAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFL 705
            +   + ++      S K   +  +L KL    H VL+F Q   ++ ++++    + + +L
Sbjct: 1045 INGAELYR-----ASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYL 1099

Query: 706  RIDGTTKASDRVKIVNDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDN 764
            R+DGTTK+ DR  ++  F E G    IFLL+++ GGLGL L  AD V++ D  WNP  D 
Sbjct: 1100 RLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDL 1159

Query: 765  QSVDRAYRIGQKKDVVVYRLMTCGTVEEKI-----YR----KQIFKGGLFKTATEHKEQI 815
            Q+ DRA+RIGQ+ +V V RL T  +VEEKI     Y+    +++ + G+F   +   E+ 
Sbjct: 1160 QAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHER- 1218

Query: 816  RYFSQ 820
            R F Q
Sbjct: 1219 RAFLQ 1223


>sp|Q9Y620|RA54B_HUMAN DNA repair and recombination protein RAD54B OS=Homo sapiens
           GN=RAD54B PE=1 SV=1
          Length = 910

 Score =  242 bits (618), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 177/548 (32%), Positives = 286/548 (52%), Gaps = 50/548 (9%)

Query: 304 LFPHQREGLRWLW----SLHCQGK-GGILGDDMGLGKTMQICGFL-----AGLFHSR-LI 352
           L PHQ+EG+ +L+     +   G+ G IL D+MGLGKT+Q    +      G +  + +I
Sbjct: 296 LRPHQKEGIIFLYECVMGMRMNGRCGAILADEMGLGKTLQCISLIWTLQCQGPYGGKPVI 355

Query: 353 KRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQD--KGVLLTTYD 410
           K+ L+V P +L+++W KE      S +I+ +       + ++++  ++     VL+ +Y+
Sbjct: 356 KKTLIVTPGSLVNNWKKEFQKWLGSERIKIF----TVDQDHKVEEFIKSIFYSVLIISYE 411

Query: 411 IVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIIS 470
           ++  +   ++   F            D +I DEGH +KN + +   +L+ +    RII++
Sbjct: 412 MLLRSLDQIKNIKF------------DLLICDEGHRLKNSAIKTTTALISLSCEKRIILT 459

Query: 471 GTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKEL 530
           GTPIQN+L+E +AL +F  P +LG    +++ YE PI+   +  A + EK +G   A EL
Sbjct: 460 GTPIQNDLQEFFALIDFVNPGILGSLSSYRKIYEEPIILSREPSASEEEKELGERRAAEL 519

Query: 531 RERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSA 590
                 + LRR +  +        +  L  K E +V+ R  + Q +LY   LNS++V   
Sbjct: 520 TCLTGLFILRRTQEII--------NKYLPPKIENVVFCRPGALQIELYRKLLNSQVVRFC 571

Query: 591 FDG----SP-LAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIAD 645
             G    SP L  +  LKK+C+HP LL     E          N E +     L++  AD
Sbjct: 572 LQGLLENSPHLICIGALKKLCNHPCLLFNSIKEKECSSTCDK-NEEKSLYKGLLSVFPAD 630

Query: 646 VAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFL 705
                 F E+       +S +L+++ +L P    VL+ S   + LN++QE     GY + 
Sbjct: 631 Y-NPLLFTEKESGKLQVLSKLLAVIHELRPTEKVVLV-SNYTQTLNILQEVCKRHGYAYT 688

Query: 706 RIDGTTKASDRVKIVNDFQ-EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDN 764
           R+DG T  S R +IV+ F  +     IFLL+S+ GG+GL L     +I+ D  WNP+TD 
Sbjct: 689 RLDGQTPISQRQQIVDGFNSQHSSFFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDI 748

Query: 765 QSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTA---TEHKEQIRYFSQQ 821
           Q++ R +R GQK  V +YRL+T GT+EEKIY++QI K GL       T+  E I+ FS +
Sbjct: 749 QAMSRVWRDGQKYPVHIYRLLTTGTIEEKIYQRQISKQGLCGAVVDLTKTSEHIQ-FSVE 807

Query: 822 DLRELLSL 829
           +L+ L +L
Sbjct: 808 ELKNLFTL 815


>sp|B3NAN8|RAD54_DROER DNA repair and recombination protein RAD54-like OS=Drosophila
           erecta GN=okr PE=3 SV=1
          Length = 784

 Score =  242 bits (617), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 169/558 (30%), Positives = 281/558 (50%), Gaps = 67/558 (12%)

Query: 300 IGNMLFPHQREGLRWLWSLHCQGK-----GGILGDDMGLGKTMQICGFLAGLFHS----- 349
           + N+L PHQREG+R+++    +GK     G I+ D+MGLGKT+Q    +  L        
Sbjct: 152 LSNILRPHQREGVRFMYEC-VEGKRGNFNGCIMADEMGLGKTLQCVTLVWTLLRQGPECK 210

Query: 350 RLIKRALVVAPKTLLSHWIKELT--------AVGLSAKIREYFGTCVKTRQYELQYVLQD 401
             I +A+VV+P +L+ +W KE T         + +    +E   T     Q+ +      
Sbjct: 211 PTINKAIVVSPSSLVKNWEKEFTKWLQGRLLCLPMEGGTKE--NTIRALEQFSMTSSRLG 268

Query: 402 KGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEI 461
             VLL +Y+  R     +        E G        +I DEGH +KN      ++L+ +
Sbjct: 269 TPVLLISYETFR-----IYAEILCKYEVG-------MVICDEGHRLKNSDNLTYQALMGL 316

Query: 462 PSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKR 521
            +  R+++SGTPIQN+L E ++L NF  PE+LG    FK  +E  ILRG +  + D E++
Sbjct: 317 KTKRRVLLSGTPIQNDLTEYYSLVNFVNPEMLGTAAVFKRNFESAILRGQNTDSTDAERQ 376

Query: 522 IGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAF 581
              A  +EL   +    +RR  N++        +  L  K EM++  +LTS Q +LY  F
Sbjct: 377 RAIAKTQELIGLVDQCIIRR-TNQIL-------TKYLPVKFEMVICAKLTSIQLELYTNF 428

Query: 582 LNSEIVLSAFDG-------SPLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAA 634
           L S+ V  +          + LA +T LKKIC HP L+ ++            +   D  
Sbjct: 429 LKSDQVRRSLADCKEKASLTALADITTLKKICSHPNLIYEK------------ITARDKG 476

Query: 635 LAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHN-VLIFSQTRKMLNLI 693
                 +  ++   KD   E    +S K   +  +L  +  +G++ V++ S   + L+L 
Sbjct: 477 FENSQNVLPSNYNAKDLNPE----LSGKFMLLDFMLAAIRADGNDKVVLISNYTQTLDLF 532

Query: 694 QESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDV-APIFLLTSQVGGLGLTLTKADRVI 752
           ++    + Y F+R+DGT     R K+V+ F + +  + +F+L+S+ GG GL L  A+R+ 
Sbjct: 533 EQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDPESDSFLFMLSSKAGGCGLNLIGANRLF 592

Query: 753 VVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHK 812
           + DP WNP+ D Q++ R +R GQKK   +YRL+  G++EEKI ++Q  K  L  T  ++ 
Sbjct: 593 MFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTIIDNN 652

Query: 813 EQI-RYFSQQDLRELLSL 829
           E   ++F++ DL++L + 
Sbjct: 653 ESAEKHFTRDDLKDLFTF 670


>sp|B3MMA5|RAD54_DROAN DNA repair and recombination protein RAD54-like OS=Drosophila
           ananassae GN=okr PE=3 SV=1
          Length = 791

 Score =  240 bits (612), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 172/560 (30%), Positives = 282/560 (50%), Gaps = 71/560 (12%)

Query: 300 IGNMLFPHQREGLRWLWSLHCQGK-----GGILGDDMGLGKTMQICGFLAGLFHS----- 349
           + N+L PHQREG+R+++    +GK     G I+ D+MGLGKT+Q    +  L        
Sbjct: 155 LSNILRPHQREGVRFMYEC-VEGKKGDFNGCIMADEMGLGKTLQCVTLVWTLLRQGPESK 213

Query: 350 RLIKRALVVAPKTLLSHWIKELT--------AVGLSAKIREYFGTCVKTRQYELQYVLQD 401
             I +A+VV+P +L+ +W KE T         + +    +E   T     Q+ +      
Sbjct: 214 PTINKAIVVSPSSLVKNWEKEFTKWLQGRLLCLAMEGGTKE--NTIRVLEQFSMTSSKLG 271

Query: 402 KGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEI 461
             VLL +Y+  R     +        E G        +I DEGH +KN      ++L+ +
Sbjct: 272 TPVLLISYETFR-----IYAEILCKYEVG-------MVICDEGHRLKNSDNLTYQALMGL 319

Query: 462 PSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKR 521
            +  R+++SGTPIQN+L E ++L NF  PE+LG    FK  +E  ILRG +  + + E++
Sbjct: 320 KTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAADFKRNFENSILRGQNADSTEGERK 379

Query: 522 IGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAF 581
                 +EL   +    +RR  N++        +  L  K EM++ ++LT+ Q QLY  F
Sbjct: 380 KAIEKTQELIGLVDQCIIRR-TNQIL-------TKYLPIKFEMVICVKLTAIQLQLYTNF 431

Query: 582 LNSEIVLSAFDG-------SPLAALTILKKICDHPLLLTKR--AAEDVLDGMDSMLNPED 632
           LNS+ V  +          + LA +T LKKIC HP L+ ++  A E   +   ++L    
Sbjct: 432 LNSDQVRRSLADCNEKASLTALADITTLKKICSHPDLIHQKIEAKEKGFENSQNVLP--- 488

Query: 633 AALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHN-VLIFSQTRKMLN 691
                      ++   K+   E     S K   +  +L  +   G++ V++ S   + L+
Sbjct: 489 -----------SNYKPKEICPEW----SGKFMLLDFMLAAIRAAGNDKVVLISNYTQTLD 533

Query: 692 LIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDV-APIFLLTSQVGGLGLTLTKADR 750
           L ++    + Y F+R+DGT     R K+V+ F + D    +F+L+S+ GG GL L  A+R
Sbjct: 534 LFEQLARKRKYGFVRLDGTMSIKKRSKVVDKFNDPDSECFLFMLSSKAGGCGLNLIGANR 593

Query: 751 VIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATE 810
           + + DP WNP+ D Q++ R +R GQKK   +YRL+  GT+EEKI ++Q  K  L  T  +
Sbjct: 594 LFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGTIEEKILQRQTHKKSLSSTIID 653

Query: 811 HKEQI-RYFSQQDLRELLSL 829
           + E   ++F++ DL++L S 
Sbjct: 654 NNESSEKHFTRDDLKDLFSF 673


>sp|O76460|RAD54_DROME DNA repair and recombination protein RAD54-like OS=Drosophila
           melanogaster GN=okr PE=1 SV=1
          Length = 784

 Score =  239 bits (611), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 167/564 (29%), Positives = 282/564 (50%), Gaps = 79/564 (14%)

Query: 300 IGNMLFPHQREGLRWLWSLHCQGK-----GGILGDDMGLGKTMQICGFLAGLFHS----- 349
           + N+L PHQREG+R+++    +GK     G I+ D+MGLGKT+Q    +  L        
Sbjct: 152 LSNILRPHQREGVRFMYEC-VEGKRGNFNGCIMADEMGLGKTLQCVTLVWTLLRQGPECK 210

Query: 350 RLIKRALVVAPKTLLSHWIKELT--------AVGLSAKIREYFGTCVKTRQYELQYVLQD 401
             I +A+VV+P +L+ +W KE T         + +    +E   T     Q+ +      
Sbjct: 211 PTINKAIVVSPSSLVKNWEKEFTKWLHGRLLCLPMEGGTKE--NTIRALEQFSMTSARLG 268

Query: 402 KGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEI 461
             VLL +Y+  R     +        E G        +I DEGH +KN      ++L+ +
Sbjct: 269 TPVLLISYETFR-----IYAEILCKYEVG-------MVICDEGHRLKNSDNLTYQALMGL 316

Query: 462 PSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKR 521
            +  R+++SGTPIQN+L E ++L NF  PE+LG    FK  +E  ILRG +  + ++E++
Sbjct: 317 KTKRRVLLSGTPIQNDLTEYYSLVNFVNPEMLGTAAVFKRNFESAILRGQNTDSTEQERQ 376

Query: 522 IGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAF 581
                 +EL   +    +RR  N++        +  L  K EM++  +LT+ Q +LY  F
Sbjct: 377 RAIEKTQELIGLVDQCIIRR-TNQIL-------TKYLPVKFEMVICAKLTAIQLELYTNF 428

Query: 582 LNSEIVLSAFDG-------SPLAALTILKKICDHPLLLTKRAA------EDVLDGMDSML 628
           L S+ V  +          + LA +T LKKIC HP L+ ++        E+  + + S  
Sbjct: 429 LKSDQVRRSLADCNEKASLTALADITTLKKICSHPDLIYEKLTAREKGFENSQNVLPSNY 488

Query: 629 NPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHN-VLIFSQTR 687
            P+D                       +  +S K   +  +L  +  EG++ V++ S   
Sbjct: 489 KPKDL----------------------NPELSGKFMLLDFMLAAIRAEGNDKVVLISNYT 526

Query: 688 KMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDV-APIFLLTSQVGGLGLTLT 746
           + L+L ++    + Y F+R+DGT     R K+V+ F + +  + +F+L+S+ GG GL L 
Sbjct: 527 QTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDPESDSFLFMLSSKAGGCGLNLI 586

Query: 747 KADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFK 806
            A+R+ + DP WNP+ D Q++ R +R GQKK   +YRL+  G++EEKI ++Q  K  L  
Sbjct: 587 GANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSS 646

Query: 807 TATEHKEQI-RYFSQQDLRELLSL 829
           T  ++ E   ++F++ DL++L + 
Sbjct: 647 TIIDNNESAEKHFTRDDLKDLFTF 670


>sp|B4MX21|RAD54_DROWI DNA repair and recombination protein RAD54-like OS=Drosophila
           willistoni GN=okr PE=3 SV=1
          Length = 784

 Score =  239 bits (610), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 174/572 (30%), Positives = 280/572 (48%), Gaps = 94/572 (16%)

Query: 300 IGNMLFPHQREGLRWLWSLHCQGK-----GGILGDDMGLGKTMQICGFLAGLFHSRL--- 351
           + N+L PHQREG+R+++    +GK     G I+ D+MGLGKT+Q    +  L        
Sbjct: 149 LSNILRPHQREGVRFMYDC-VEGKKGNFNGCIMADEMGLGKTLQCVTLVWTLLRQSCECK 207

Query: 352 --IKRALVVAPKTLLSHWIKELT--------AVGLSAKIREYFGTCVKTRQYELQYVLQ- 400
             I +A++V+P +L+ +W KE T         + +    +E   T     Q+ +    + 
Sbjct: 208 PTITKAIIVSPSSLVKNWEKEFTKWLHGRMHCLAMEGGSKE--DTIKALEQFSMNTSTRL 265

Query: 401 DKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLE 460
              VLL +Y+  R     +  +    +E G        +I DEGH +KN      ++L+ 
Sbjct: 266 GTPVLLISYETFR-----IYANILCQNEVG-------MVICDEGHRLKNSDNLTYQALMG 313

Query: 461 IPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREK 520
           + +  R+++SGTPIQN+L E ++L NF  PE+LG    FK  +E PIL+G +  + D+E+
Sbjct: 314 LKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAADFKRNFENPILKGQNTDSSDKER 373

Query: 521 RIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEA 580
                  +EL   +    +RR  N++        +  L  K EM++ +RLTS Q + Y  
Sbjct: 374 ERALEKTQELIGLVNQCIIRR-TNQIL-------TKYLPVKFEMVICVRLTSVQLEFYTN 425

Query: 581 FLNSEIVLSAFDG-------SPLAALTILKKICDHP-LLLTKRAAEDVLDGMDSM----- 627
           FL S+ V  +          + LA +T LKK+C HP L+  K  A D   G ++      
Sbjct: 426 FLKSDKVRRSLADCNEKASLTALADITTLKKLCSHPDLIYEKMLARD--KGFENSQNILP 483

Query: 628 -------LNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNV 680
                  LNPE +     L   +A +    D                   DK       V
Sbjct: 484 TNYKPKDLNPELSGKFMLLDFMLATIRANSD-------------------DK-------V 517

Query: 681 LIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQ--EGDVAPIFLLTSQV 738
           ++ S   + L+L ++    + Y F+R+DGT     R K+V+ F   E D   +F+L+S+ 
Sbjct: 518 VLISNYTQTLDLFEQLARKRKYTFVRLDGTMTIKKRSKVVDRFNDPENDCF-LFMLSSKA 576

Query: 739 GGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQ 798
           GG GL L  A+R+ + DP WNP+ D Q++ R +R GQKK   +YRL+  G++EEKI ++Q
Sbjct: 577 GGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQ 636

Query: 799 IFKGGLFKTATEHKEQI-RYFSQQDLRELLSL 829
             K  L  T  ++ E   ++F++ DL++L S 
Sbjct: 637 THKKSLSSTIIDNNESAEKHFTRDDLKDLFSF 668


>sp|P32863|RAD54_YEAST DNA repair and recombination protein RAD54 OS=Saccharomyces
           cerevisiae (strain ATCC 204508 / S288c) GN=RAD54 PE=1
           SV=1
          Length = 898

 Score =  238 bits (607), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 166/531 (31%), Positives = 264/531 (49%), Gaps = 63/531 (11%)

Query: 324 GGILGDDMGLGKTMQICGFLAGLFHS-----RLIKRALVVAPKTLLSHWIKEL------- 371
           G I+ D+MGLGKT+Q    +  L        RLI + ++V P +L+++W  EL       
Sbjct: 330 GCIMADEMGLGKTLQCIALMWTLLRQGPQGKRLIDKCIIVCPSSLVNNWANELIKWLGPN 389

Query: 372 --TAVGLSAKIREYFGTCVKTRQYELQYVLQDKG------VLLTTYDIVRNNSKSLRGSS 423
             T + +  K +   G    T    +    Q +G      VL+ +Y+ +R N   L+  +
Sbjct: 390 TLTPLAVDGK-KSSMGGGNTTVSQAIHAWAQAQGRNIVKPVLIISYETLRRNVDQLKNCN 448

Query: 424 FISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWA 483
                          M+ DEGH +KN  +    +L  I    R+I+SGTPIQN+L E +A
Sbjct: 449 V------------GLMLADEGHRLKNGDSLTFTALDSISCPRRVILSGTPIQNDLSEYFA 496

Query: 484 LFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLK 543
           L +F  P LLG    F++ +E PILRG D  A D+E   G A  ++L   +  + +RR  
Sbjct: 497 LLSFSNPGLLGSRAEFRKNFENPILRGRDADATDKEITKGEAQLQKLSTIVSKFIIRR-T 555

Query: 544 NEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSE----IVLSAFDGSPLAAL 599
           N++        +  L  K E ++++ L   Q +LY   + S     +V       PL A+
Sbjct: 556 NDIL-------AKYLPCKYEHVIFVNLKPLQNELYNKLIKSREVKKVVKGVGGSQPLRAI 608

Query: 600 TILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNI 659
            ILKK+C+HP LL                  +D    E    +    ++  D Q ++   
Sbjct: 609 GILKKLCNHPNLLNFEDEF------------DDEDDLELPDDYNMPGSKARDVQTKY--- 653

Query: 660 SCKISFILSLLDKLIPEGHN-VLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVK 718
           S K S +   L K+  E  + +++ S   + L+LI++    K Y  +R+DGT   + R K
Sbjct: 654 SAKFSILERFLHKIKTESDDKIVLISNYTQTLDLIEKMCRYKHYSAVRLDGTMSINKRQK 713

Query: 719 IVNDFQEGDVAP-IFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKK 777
           +V+ F + +    IFLL+S+ GG G+ L  A+R+I++DP WNP+ D Q++ R +R GQKK
Sbjct: 714 LVDRFNDPEGQEFIFLLSSKAGGCGINLIGANRLILMDPDWNPAADQQALARVWRDGQKK 773

Query: 778 DVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQI-RYFSQQDLRELL 827
           D  +YR ++ GT+EEKI+++Q  K  L     + KE + R FS  +LR+L 
Sbjct: 774 DCFIYRFISTGTIEEKIFQRQSMKMSLSSCVVDAKEDVERLFSSDNLRQLF 824


>sp|Q08773|ISW2_YEAST ISWI chromatin-remodeling complex ATPase ISW2 OS=Saccharomyces
           cerevisiae (strain ATCC 204508 / S288c) GN=ISW2 PE=1
           SV=1
          Length = 1120

 Score =  237 bits (605), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 165/538 (30%), Positives = 269/538 (50%), Gaps = 87/538 (16%)

Query: 269 VLDDYSDDSVLEDEGSITLSGPRSTYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILG 328
           ++D Y +D  + +  S   SG    Y             Q +GL WL SLH     GIL 
Sbjct: 162 IVDTYQEDIFVSESPSFVKSGKLRDY-------------QVQGLNWLISLHENKLSGILA 208

Query: 329 DDMGLGKTMQICGFLAGLFHSRLIKRA-LVVAPKTLLSHWIKELTAVGLSAKIREYFGTC 387
           D+MGLGKT+Q   FL  L + + I+   L++ PK+ L +W +E      +  +    G  
Sbjct: 209 DEMGLGKTLQTISFLGYLRYVKQIEGPFLIIVPKSTLDNWRREFLKWTPNVNVLVLHGDK 268

Query: 388 VKTRQYELQYVLQDK-GVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHL 446
                     +L+ +  VL+T+Y++V     +L+  +            W Y+++DE H 
Sbjct: 269 DTRADIVRNIILEARFDVLITSYEMVIREKNALKRLA------------WQYIVIDEAHR 316

Query: 447 IKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELP 506
           IKN  +  ++ +    S +R++I+GTP+QNNL ELWAL NF  P++ GD++ F E +E  
Sbjct: 317 IKNEQSALSQIIRLFYSKNRLLITGTPLQNNLHELWALLNFLLPDIFGDSELFDEWFE-- 374

Query: 507 ILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIV 566
             + N +   D+E      V ++L   + P+ LRR+K +V          +L  K E  V
Sbjct: 375 --QNNSEQ--DQE-----IVIQQLHSVLNPFLLRRVKADV--------EKSLLPKIETNV 417

Query: 567 WLRLTSCQRQLYEAFLNSEIVLSAFDGSP---------LAALTILKKICDHPLLLTKRAA 617
           ++ +T  Q Q Y++ L  +I   A +G+          L  +  L+K C+HP L      
Sbjct: 418 YVGMTDMQIQWYKSLLEKDI--DAVNGAVGKREGKTRLLNIVMQLRKCCNHPYL------ 469

Query: 618 EDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEG 677
               +G            AE    +  D        E     S K+  +  LL +L  +G
Sbjct: 470 ---FEG------------AEPGPPYTTD--------EHLIFNSGKMIILDKLLKRLKEKG 506

Query: 678 HNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAP-IFLLTS 736
             VLIFSQ  ++L+++++    + +++ RIDG+T   +R++ ++++ + +    +FLLT+
Sbjct: 507 SRVLIFSQMSRLLDILEDYCYFRDFEYCRIDGSTSHEERIEAIDEYNKPNSEKFVFLLTT 566

Query: 737 QVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKI 794
           + GGLG+ L  AD VI+ D  WNP  D Q++DRA+RIGQKK V VYR +T   +EEK+
Sbjct: 567 RAGGLGINLVTADTVILFDSDWNPQADLQAMDRAHRIGQKKQVHVYRFVTENAIEEKV 624


>sp|Q29KH2|RAD54_DROPS DNA repair and recombination protein RAD54-like OS=Drosophila
           pseudoobscura pseudoobscura GN=okr PE=3 SV=2
          Length = 782

 Score =  236 bits (603), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 172/561 (30%), Positives = 280/561 (49%), Gaps = 71/561 (12%)

Query: 300 IGNMLFPHQREGLRWLWSLHCQGK-----GGILGDDMGLGKTMQICGFLAGLFHSR---- 350
           + N+L PHQREG+R+++    +GK     G I+ D+MGLGKT+Q    +  L        
Sbjct: 148 LSNILRPHQREGVRFMYEC-VEGKRGNFNGCIMADEMGLGKTLQCVALVWTLLKQSAECK 206

Query: 351 -LIKRALVVAPKTLLSHWIKELT--------AVGLSAKIREYFGTCVKTRQYELQYVLQ- 400
             I + ++V+P +L+ +W KE T         + +    +E   T     Q+ +    + 
Sbjct: 207 PTINKCIIVSPSSLVKNWEKEFTKWLHGRMHCLAMEGGSKE--NTVRALEQFSMNASTRL 264

Query: 401 DKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLE 460
              VLL +Y+  R     +        E G        +I DEGH +KN      ++L+ 
Sbjct: 265 GTPVLLISYETFR-----IYAEILCKYEVG-------MVICDEGHRLKNSDNLTYQALMG 312

Query: 461 IPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREK 520
           + +  R+++SGTPIQN+L E ++L NF  PE+LG    FK  +E  ILRG +  + D+E+
Sbjct: 313 LKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAADFKRNFENCILRGQNADSTDKER 372

Query: 521 RIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEA 580
                  +EL + +    +RR  N++        +  L  K EM++  +LT  Q QLY  
Sbjct: 373 DRALEKTQELIKLVDQCIIRR-TNQIL-------TKYLPVKFEMVICAKLTPIQLQLYTN 424

Query: 581 FLNSEIVLSAFDG-------SPLAALTILKKICDHP-LLLTKRAAEDVLDGMDSMLNPED 632
           FL S+ V  +          + LA +T LKK+C HP L+  K AAE+   G ++  N   
Sbjct: 425 FLKSDQVRRSLADCKEKASLTALADITTLKKLCSHPNLICEKIAAEE--KGFENSQNILP 482

Query: 633 AALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHN-VLIFSQTRKMLN 691
                K               E +  +S K   +  +L  +   G++ V++ S   + L+
Sbjct: 483 INYNPK--------------GEINPELSGKFKLLDFMLAAIRAHGNDKVVLISNYTQTLD 528

Query: 692 LIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQ--EGDVAPIFLLTSQVGGLGLTLTKAD 749
           L ++    + Y F+R+DGT     R K+V+ F   E D   +F+L+S+ GG GL L  A+
Sbjct: 529 LFEQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDPESDCF-LFMLSSKAGGCGLNLIGAN 587

Query: 750 RVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTAT 809
           R+ + DP WNP+ D Q++ R +R GQKK   +YRL+  G++EEKI ++Q  K  L  T  
Sbjct: 588 RLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTII 647

Query: 810 EHKEQI-RYFSQQDLRELLSL 829
           ++ E   ++F++ DL++L S 
Sbjct: 648 DNNESAEKHFTRDDLKDLFSF 668


>sp|B4KHL5|RAD54_DROMO DNA repair and recombination protein RAD54-like OS=Drosophila
           mojavensis GN=okr PE=3 SV=1
          Length = 783

 Score =  236 bits (603), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 169/565 (29%), Positives = 280/565 (49%), Gaps = 80/565 (14%)

Query: 300 IGNMLFPHQREGLRWLWSLHCQGK-----GGILGDDMGLGKTMQICGFLAGLFHSR---- 350
           + N+L PHQREG+R+++    +GK     G I+ D+MGLGKT+Q       L        
Sbjct: 145 LSNVLRPHQREGVRFMYEC-VEGKRGNFNGCIMADEMGLGKTLQCVTLTWTLLRQSPDCK 203

Query: 351 -LIKRALVVAPKTLLSHWIKELT--------AVGLSAKIREYFGTCVKTRQYELQYVLQ- 400
             I +A++V+P +L+ +W KE T         + +    +E   T     Q+ +    + 
Sbjct: 204 PTISKAIIVSPSSLVKNWEKEFTKWLHGRMHCLAMEGGSKE--DTTRALEQFAMNTATRC 261

Query: 401 DKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLE 460
              VLL +Y+  R     L        E G        +I DEGH +KN      ++L+ 
Sbjct: 262 GTPVLLISYETFR-----LYAHILCKTEVG-------MVICDEGHRLKNSDNLTYQALMG 309

Query: 461 IPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREK 520
           + +  R+++SGTPIQN+L E ++L NF  PE+LG    FK  +E  ILRG +  + D E+
Sbjct: 310 LKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAADFKRNFENSILRGQNADSTDAER 369

Query: 521 RIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEA 580
           +      +EL   +    +RR  N++        +  L  K EM+V ++LT  Q Q+Y  
Sbjct: 370 QRALQKTQELIGLVNQCIIRR-TNQIL-------TKYLPVKFEMVVCVKLTPVQLQIYTN 421

Query: 581 FLNSEIVLSAFDG-------SPLAALTILKKICDHPLLLTKR--AAEDVLDGMDSMLNPE 631
           FL S+ V  +          + LA +T LKK+C+HP L+ ++  A E   +   ++L P 
Sbjct: 422 FLKSDQVRRSLADCNEKASLTALADITTLKKLCNHPDLIYEKIAAKEKGFENSQNVLPP- 480

Query: 632 DAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIP-----EGHNVLIFSQT 686
                        +   KD        ++ ++S    LLD ++          V++ S  
Sbjct: 481 -------------NYKPKD--------VNPELSGKFMLLDFMLAAIRANSDDKVVLISNY 519

Query: 687 RKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDV-APIFLLTSQVGGLGLTL 745
            + L+L ++    + Y ++R+DGT     R K+V+ F +      +F+L+S+ GG GL L
Sbjct: 520 TQTLDLFEQLARKRKYTYVRLDGTMTIKKRSKVVDRFNDPSTDCFLFMLSSKAGGCGLNL 579

Query: 746 TKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLF 805
             A+R+ + DP WNP+ D Q++ R +R GQKK   +YRL+  G++EEKI ++Q  K  L 
Sbjct: 580 IGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLS 639

Query: 806 KTATEHKEQI-RYFSQQDLRELLSL 829
            T  ++ E   ++F++ DL++L S 
Sbjct: 640 STIIDNNESSEKHFTRDDLKDLFSF 664


>sp|Q9US25|HRP1_SCHPO Chromodomain helicase hrp1 OS=Schizosaccharomyces pombe (strain 972
           / ATCC 24843) GN=hrp1 PE=1 SV=1
          Length = 1373

 Score =  236 bits (602), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 184/582 (31%), Positives = 290/582 (49%), Gaps = 100/582 (17%)

Query: 293 TYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSR-- 350
           +Y+  G+I +     Q  G+ W+  L  + + GIL D+MGLGKT+Q   FL+ L HS   
Sbjct: 383 SYIKGGEIRDF----QLTGINWMAYLWHRNENGILADEMGLGKTVQTVCFLSYLVHSLKQ 438

Query: 351 ------LIKRALVVAPKTLLSHWIKELTAVGLS------AKIREY-FGTCVKTRQYELQY 397
                 ++  + V A +  L++W  +L ++  +      A IREY F     +R+ +   
Sbjct: 439 HGPFLIVVPLSTVPAWQETLANWTPDLNSICYTGNTESRANIREYEFYLSTNSRKLKF-- 496

Query: 398 VLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKS 457
                 +LLTTY+ +  + + L            ++  W Y+ +DE H +KN  +   ++
Sbjct: 497 -----NILLTTYEYILKDKQEL------------NNIRWQYLAIDEAHRLKNSESSLYET 539

Query: 458 LLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALD 517
           L +  +A+R++I+GTP+QNNLKEL +L NF  P        F  + EL      D+   +
Sbjct: 540 LSQFRTANRLLITGTPLQNNLKELASLVNFLMPGK------FYIRDELNF----DQPNAE 589

Query: 518 REKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQL 577
           +E+ I     ++L+ER+QP+ LRRLK +V          +L  K+E I+ + L+  Q + 
Sbjct: 590 QERDI-----RDLQERLQPFILRRLKKDV--------EKSLPSKSERILRVELSDMQTEW 636

Query: 578 YEAFL--NSEIVLSAFDG----SPLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPE 631
           Y+  L  N   +    DG    S L  +  LKK+ +HP L    AAE  +  M   +  E
Sbjct: 637 YKNILTKNYRALTGHTDGRGQLSLLNIVVELKKVSNHPYLFPG-AAEKWM--MGRKMTRE 693

Query: 632 DAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLN 691
           D      + M+                 S K+  +  LL +L  +GH VLIFSQ  +MLN
Sbjct: 694 DTLRG--IIMN-----------------SGKMVLLDKLLQRLKHDGHRVLIFSQMVRMLN 734

Query: 692 LIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAP--IFLLTSQVGGLGLTLTKAD 749
           ++ E +  +GY + R+DGT  AS R   ++ F   D +P  +FLL+++ GGLG+ L  AD
Sbjct: 735 ILGEYMSLRGYNYQRLDGTIPASVRRVSIDHFNAPD-SPDFVFLLSTRAGGLGINLNTAD 793

Query: 750 RVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIY----RKQIFKGGLF 805
            VI+ D  WNP  D Q++ RA+RIGQK  V VYR ++  TVEE I     RK I +  + 
Sbjct: 794 TVIIFDSDWNPQADLQAMARAHRIGQKNHVNVYRFLSKDTVEEDILERARRKMILEYAII 853

Query: 806 KTATEHKEQIRYFSQQDLRELLSLPKQG----FDVSLTQQQL 843
                 K +     + D +EL ++ K G    F  +  Q++L
Sbjct: 854 SLGVTEKSKNSKNDKYDAQELSAILKFGASNMFKATENQKKL 895


>sp|B4NXB8|RAD54_DROYA DNA repair and recombination protein RAD54-like OS=Drosophila
           yakuba GN=okr PE=3 SV=2
          Length = 784

 Score =  236 bits (602), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 166/560 (29%), Positives = 284/560 (50%), Gaps = 71/560 (12%)

Query: 300 IGNMLFPHQREGLRWLWSLHCQGK-----GGILGDDMGLGKTMQICGFLAGLFHS----- 349
           + N+L PHQREG+R+++    +GK     G I+ D+MGLGKT+Q    +  L        
Sbjct: 152 LSNILRPHQREGVRFMYEC-VEGKRGNFNGCIMADEMGLGKTLQCVTLVWTLLRQGPECK 210

Query: 350 RLIKRALVVAPKTLLSHWIKELT--------AVGLSAKIREYFGTCVKTRQYELQYVLQD 401
             I +A+VV+P +L+ +W KE T         + +    +E   T     Q+ +      
Sbjct: 211 PTINKAIVVSPSSLVKNWEKEFTKWLQGRLLCLPMEGGTKE--NTIRALEQFSMTSSRLG 268

Query: 402 KGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEI 461
             VLL +Y+  R     +        E G        +I DEGH +KN      ++L+ +
Sbjct: 269 TPVLLISYETFR-----IYAEILCKYEVG-------MVICDEGHRLKNSDNLTYQALMGL 316

Query: 462 PSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKR 521
            +  R+++SGTPIQN+L E ++L NF  PE+LG    FK  +E  ILRG +  + + E++
Sbjct: 317 KTKRRVLLSGTPIQNDLTEYYSLVNFVNPEMLGTAAVFKRNFESAILRGQNTDSTEGERQ 376

Query: 522 IGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAF 581
                 +EL   +    +RR  N++        +  L  K EM++  +LTS Q +LY  F
Sbjct: 377 RAIEKTQELIGLVDQCIIRR-TNQIL-------TKYLPVKFEMVICAKLTSIQLELYTNF 428

Query: 582 LNSEIVLSAFDG-------SPLAALTILKKICDHPLLLTKR--AAEDVLDGMDSMLNPED 632
           L S+ V  +          + LA +T LKKIC HP L+ ++  A E   +   ++L P +
Sbjct: 429 LKSDQVRRSLADCNEKASLTALADITTLKKICSHPDLIYEKITAREKGFENSQNVL-PSN 487

Query: 633 AALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHN-VLIFSQTRKMLN 691
                             + ++ +  +S K   +  +L  +  +G++ V++ S   + L+
Sbjct: 488 Y-----------------NTKDLNPELSGKFMLLDFMLAAIRADGNDKVVLISNYTQTLD 530

Query: 692 LIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDV-APIFLLTSQVGGLGLTLTKADR 750
           L ++    + Y F+R+DGT     R K+V+ F + +  + +F+L+S+ GG GL L  A+R
Sbjct: 531 LFEQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDPESDSFLFMLSSKAGGCGLNLIGANR 590

Query: 751 VIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATE 810
           + + DP WNP+ D Q++ R +R GQKK   +YR++  G++EEKI ++Q  K  L  T  +
Sbjct: 591 LFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRMVASGSIEEKILQRQTHKKSLSSTIID 650

Query: 811 HKEQI-RYFSQQDLRELLSL 829
           + E   ++F++ DL++L + 
Sbjct: 651 NNESAEKHFTRDDLKDLFTF 670


>sp|B4JCS7|RAD54_DROGR DNA repair and recombination protein RAD54-like OS=Drosophila
           grimshawi GN=okr PE=3 SV=1
          Length = 786

 Score =  236 bits (602), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 174/562 (30%), Positives = 281/562 (50%), Gaps = 74/562 (13%)

Query: 300 IGNMLFPHQREGLRWLWSLHCQGK-----GGILGDDMGLGKTMQICGFLAGLFHSR---- 350
           + N+L PHQREG+R+++    +GK     G I+ D+MGLGKT+Q       L        
Sbjct: 145 LSNVLRPHQREGVRFMYEC-VEGKRGSFNGCIMADEMGLGKTLQCVTLTWTLLRQSADCK 203

Query: 351 -LIKRALVVAPKTLLSHWIKELTAV--GLSAKIREYFGTCVKTRQYELQYVLQDKG---- 403
             I +A+VV+P +L+ +W KE T    G    +    G+  +T +   Q+ +        
Sbjct: 204 PTISKAIVVSPSSLVKNWEKEFTKWLHGRMHCLAMEGGSKEETTRTLEQFAMNTSTRCGT 263

Query: 404 -VLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIP 462
            VLL +Y+  R     L        E G        +I DEGH +KN      ++L+ + 
Sbjct: 264 PVLLISYETFR-----LYAHILCKTEVG-------MVICDEGHRLKNSDNLTYQALMGLK 311

Query: 463 SAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRI 522
           +  R+++SGTPIQN+L E ++L NF  PE+LG    FK  +E  ILRG +  + D E+  
Sbjct: 312 TKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTATDFKRNFENAILRGQNADSTDTERER 371

Query: 523 GSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFL 582
                +EL   +    +RR  N++        +  L  K EM+V  +LT+ Q Q+Y  FL
Sbjct: 372 ALLKTQELIGLVNQCIIRR-TNQIL-------TKYLPVKFEMVVCAKLTAVQLQIYTNFL 423

Query: 583 NSEIVLSAF----DGSPLAAL---TILKKICDHP-LLLTKRAAEDVLDGMDSMLNPEDAA 634
            S+ V  +     + + L AL   T LKK+C+HP L+  K AA +   G ++  N   A 
Sbjct: 424 KSDQVCRSLADCNEKTSLTALSDITTLKKLCNHPDLIYEKLAARE--KGFENSQNVLPAN 481

Query: 635 LAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIP-----EGHNVLIFSQTRKM 689
              K                   +I+ ++S    LLD ++          V++ S   + 
Sbjct: 482 YKPK-------------------DINPELSGKFMLLDFMLAAIRANSDDKVVLISNYTQT 522

Query: 690 LNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDV-APIFLLTSQVGGLGLTLTKA 748
           L+L ++    + Y ++R+DGT     R K+V+ F +      +F+L+S+ GG GL L  A
Sbjct: 523 LDLFEQLARKRKYSYVRLDGTMTIKKRSKVVDRFNDPSSDCFLFMLSSKAGGCGLNLIGA 582

Query: 749 DRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTA 808
           +R+ + DP WNP+ D Q++ R +R GQKK   +YRL+  G++EEKI ++Q  K  L  T 
Sbjct: 583 NRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTI 642

Query: 809 TEHKEQI-RYFSQQDLRELLSL 829
            ++ E + ++F++ DL++L S 
Sbjct: 643 IDNNESVEKHFTRDDLKDLFSF 664


>sp|Q9H4L7|SMRCD_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A containing DEAD/H box 1 OS=Homo
           sapiens GN=SMARCAD1 PE=1 SV=2
          Length = 1026

 Score =  236 bits (601), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 153/520 (29%), Positives = 269/520 (51%), Gaps = 54/520 (10%)

Query: 304 LFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTL 363
           L P+Q+ GL WL  +H  G  GIL D+MGLGKT+Q   FLA L+        L+V P + 
Sbjct: 497 LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNNGPHLIVVPAST 556

Query: 364 LSHWIKELTAVGLSAKIREYFGTCVKTRQ--YELQYVLQDKGVLLTTYDIVRNNSKSLRG 421
           + +W++E+     + K+  Y+G+  + +Q  + +    +D  V++TTY+   ++S     
Sbjct: 557 IDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSS----- 611

Query: 422 SSFISDEAGDDDAIW-----DYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQN 476
                    DD +++     +Y I DEGH++KN  + R + L+ I + +R++++GTP+QN
Sbjct: 612 ---------DDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQN 662

Query: 477 NLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQP 536
           NL EL +L NF  P +   +     +      +  D+ ++  ++RI  A     ++ I+P
Sbjct: 663 NLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHA-----KQIIKP 717

Query: 537 YFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLN---SEIVLSAFDG 593
           + LRR+K EV  +        L  K + I    ++  Q QLY    N     I     + 
Sbjct: 718 FILRRVKEEVLKQ--------LPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLEKNT 769

Query: 594 SPLAALTILKKICDHPLLLTKRAAEDVLDGMDSML---------NP----EDAALAEKLA 640
                +  L+K+ +HPLL  +    + L  M  ++         NP    ED  +     
Sbjct: 770 EMCNVMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFE 829

Query: 641 MHI--ADVAEKDDFQEQHDNI--SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQES 696
           +H+        ++FQ   D I  S K   +  +L +L  +G  V++FSQ   ML++++  
Sbjct: 830 LHVLCKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVL 889

Query: 697 IGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDP 756
           +    +++LR+DG T+ S+R+ ++++F       +FLL+++ GGLG+ LT A+ VI+ D 
Sbjct: 890 LKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDI 949

Query: 757 AWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYR 796
             NP  D Q+ DR +R+GQ K+V+V +L++ GT+EE + +
Sbjct: 950 DCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLK 989


>sp|Q9VL72|SMRCD_DROME SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A containing DEAD/H box 1 homolog
           OS=Drosophila melanogaster GN=Etl1 PE=1 SV=1
          Length = 844

 Score =  235 bits (599), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 160/519 (30%), Positives = 265/519 (51%), Gaps = 44/519 (8%)

Query: 301 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRA-LVVA 359
           G  L  +Q  GL WL  +H Q   GIL D+MGLGKT+Q+  FLA L  + L + A L+V 
Sbjct: 286 GLQLADYQIIGLNWLTVMHKQEMNGILADEMGLGKTIQVIAFLAYLKENGLSQAAHLIVV 345

Query: 360 PKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYV---LQDKGVLLTTYDIVRNNS 416
           P + L +W  E++       + +Y G+  + R+   ++         VLLTTY IV +  
Sbjct: 346 PSSTLDNWEAEISRWCPELVVEKYHGSQDERRRMRGRFAKDGFTGFDVLLTTYHIVGSTP 405

Query: 417 KSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQN 476
           +  +                DY+I DE H++KN +TQR  +L+ I +  RI+++GTP+QN
Sbjct: 406 EERKMFRVCK---------LDYVIFDEAHMLKNMTTQRYANLITINARMRILLTGTPLQN 456

Query: 477 NLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQP 536
           NL EL +L  F  P+     K  ++   L   +G      D   +      +  +  ++P
Sbjct: 457 NLLELISLLCFVMPKFFA--KSIEDIKSLFAKKGKSDGDQDEVSQFQETQIQRAKRIMKP 514

Query: 537 YFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFL-----NSEIVLSAF 591
           + LRRLK +V           L KK  ++  + ++S Q+  Y   +     N   V S+ 
Sbjct: 515 FVLRRLKKDVLK--------NLPKKLSLVEKVPMSSQQKIYYHELVDYYSNNKGEVCSSS 566

Query: 592 DGSPLAALTILKKICDHPLLLTKRAAEDVLDGMDSML-------NPEDAALAEKLAM--- 641
           + + +A +  +++I +HPLL+     +  L G    L          +  + E+LA+   
Sbjct: 567 ERAGIAIMMEMRRIANHPLLMRHYFTDANLRGFSKRLANASSFKKTNEQYIFEELAVMSD 626

Query: 642 -HIADVAEKDDFQEQH--DNISC---KISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQE 695
             +  +  K +F +    DN+ C   K  ++ +LL KL  EGH VL+FSQ   ML++++E
Sbjct: 627 FQVYQMMNKHEFYDVKIPDNLICDSGKFLYLDTLLPKLKAEGHRVLLFSQFTMMLDIVEE 686

Query: 696 SIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVD 755
            +  + + F R+DG T  + R  ++ DF   D   +FLL+++ GG+G+ LT AD  ++ D
Sbjct: 687 YLRIRKFGFCRLDGATAVNVRQDLITDFNGDDSIFVFLLSTKAGGVGINLTAADTCVIHD 746

Query: 756 PAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKI 794
             +NP  D Q+ DR +R+GQ++ V +YRL++  T+EE I
Sbjct: 747 IDFNPYNDKQAEDRCHRMGQQRPVTIYRLISESTIEEGI 785


>sp|Q9XFH4|DDM1_ARATH ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana GN=DDM1
           PE=1 SV=1
          Length = 764

 Score =  234 bits (597), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 164/522 (31%), Positives = 263/522 (50%), Gaps = 64/522 (12%)

Query: 295 MLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKR 354
           + P   G  L  +Q +G++WL SL   G  GIL D MGLGKT+Q  GFL+ L  + L   
Sbjct: 193 LCPLLTGGQLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLSHLKGNGLDGP 252

Query: 355 ALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKG----VLLTTYD 410
            LV+AP + LS+W  E+     S     Y G   +  +   +++ +  G    +++T+Y+
Sbjct: 253 YLVIAPLSTLSNWFNEIARFTPSINAIIYHGDKNQRDELRRKHMPKTVGPKFPIVITSYE 312

Query: 411 IVRNNSKS-LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIII 469
           +  N++K  LR               W Y+++DEGH +KN   +  + L  +   +++++
Sbjct: 313 VAMNDAKRILRHYP------------WKYVVIDEGHRLKNHKCKLLRELKHLKMDNKLLL 360

Query: 470 SGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKE 529
           +GTP+QNNL ELW+L NF  P++   +  F+  ++      N+    + EKR    V+K 
Sbjct: 361 TGTPLQNNLSELWSLLNFILPDIFTSHDEFESWFDFSEKNKNEATKEEEEKRRAQVVSK- 419

Query: 530 LRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVL- 588
           L   ++P+ LRR+K +V          +L +K E+I++  +T  Q++  E  +N+ +   
Sbjct: 420 LHGILRPFILRRMKCDV--------ELSLPRKKEIIMYATMTDHQKKFQEHLVNNTLEAH 471

Query: 589 ---SAFDGS----PLAALTI-LKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLA 640
              +A  G      L  L I L+K C+HP LL  +     +DG  S L P    +  +  
Sbjct: 472 LGENAIRGQGWKGKLNNLVIQLRKNCNHPDLLQGQ-----IDG--SYLYPPVEEIVGQCG 524

Query: 641 MHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSK 700
                                K   +  LL +L    H VLIFSQ  K+L+++      K
Sbjct: 525 ---------------------KFRLLERLLVRLFANNHKVLIFSQWTKLLDIMDYYFSEK 563

Query: 701 GYKFLRIDGTTKASDRVKIVNDFQ-EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWN 759
           G++  RIDG+ K  +R + + DF  E     IFLL+++ GGLG+ LT AD  I+ D  WN
Sbjct: 564 GFEVCRIDGSVKLDERRRQIKDFSDEKSSCSIFLLSTRAGGLGINLTAADTCILYDSDWN 623

Query: 760 PSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 801
           P  D Q++DR +RIGQ K V VYRL T  ++E ++ ++   K
Sbjct: 624 PQMDLQAMDRCHRIGQTKPVHVYRLSTAQSIETRVLKRAYSK 665


>sp|B4GS98|RAD54_DROPE DNA repair and recombination protein RAD54-like OS=Drosophila
           persimilis GN=okr PE=3 SV=1
          Length = 782

 Score =  234 bits (597), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 170/566 (30%), Positives = 280/566 (49%), Gaps = 81/566 (14%)

Query: 300 IGNMLFPHQREGLRWLWSLHCQGK-----GGILGDDMGLGKTMQICGFLAGLFHSR---- 350
           + N+L PHQREG+R+++    +GK     G I+ D+MGLGKT+Q    +  L        
Sbjct: 148 LSNILRPHQREGVRFMYEC-VEGKRGNFNGCIMADEMGLGKTLQCVALVWTLLKQSAECK 206

Query: 351 -LIKRALVVAPKTLLSHWIKELT--------AVGLSAKIREYFGTCVKTRQYELQYVLQ- 400
             I + ++V+P +L+ +W KE T         + +    +E   T     Q+ +    + 
Sbjct: 207 PTINKCIIVSPSSLVKNWEKEFTKWLHGRMHCLAMEGGSKE--NTVRALEQFSMNASTRL 264

Query: 401 DKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLE 460
              VLL +Y+  R     +        E G        +I DEGH +KN      ++L+ 
Sbjct: 265 GTPVLLISYETFR-----IYAEILCKYEVG-------MVICDEGHRLKNSDNLTYQALMG 312

Query: 461 IPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREK 520
           + +  R+++SGTPIQN+L E ++L NF  PE+LG    FK  +E  ILRG +  + D+E+
Sbjct: 313 LKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAADFKRNFENCILRGQNADSTDKER 372

Query: 521 RIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEA 580
                  +EL + +    +RR  N++        +  L  K EM++  +LT  Q QLY  
Sbjct: 373 DRALEKTQELIKLVDQCIIRR-TNQIL-------TKYLPVKFEMVICAKLTPIQLQLYTN 424

Query: 581 FLNSEIVLSAFDG-------SPLAALTILKKICDHPLLLTKR--AAEDVLDGMDSML--- 628
           FL S+ V  +          + LA +T LKK+C HP L+ ++  A E   +   ++L   
Sbjct: 425 FLKSDQVRRSLADCKEKASLTALADITTLKKLCSHPNLICEKIAAGEKGFENSQNILPIN 484

Query: 629 -NPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHN-VLIFSQT 686
            NP+                      E +  +S K   +  +L  +   G++ V++ S  
Sbjct: 485 YNPKG---------------------EINPELSGKFKLLDFMLAAIRAHGNDKVVLISNY 523

Query: 687 RKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQ--EGDVAPIFLLTSQVGGLGLT 744
            + L+L +     + Y F+R+DGT     R K+V+ F   E D   +F+L+S+ GG GL 
Sbjct: 524 TQTLDLFELLARKRKYGFVRLDGTMSIKKRSKVVDRFNDPESDCF-LFMLSSKAGGCGLN 582

Query: 745 LTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGL 804
           L  A+R+ + DP WNP+ D Q++ R +R GQKK   +YRL+  G++EEKI ++Q  K  L
Sbjct: 583 LIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSL 642

Query: 805 FKTATEHKEQI-RYFSQQDLRELLSL 829
             T  ++ E   ++F++ DL++L S 
Sbjct: 643 SSTIIDNNESAEKHFTRDDLKDLFSF 668


>sp|E1B7X9|SMRCD_BOVIN SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A containing DEAD/H box 1 OS=Bos
           taurus GN=SMARCAD1 PE=3 SV=2
          Length = 1028

 Score =  234 bits (596), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 153/520 (29%), Positives = 268/520 (51%), Gaps = 54/520 (10%)

Query: 304 LFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTL 363
           L P+Q+ GL WL  +H  G  GIL D+MGLGKT+Q   FLA L+        L+V P + 
Sbjct: 499 LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGNKGPHLIVVPAST 558

Query: 364 LSHWIKELTAVGLSAKIREYFGTCVKTRQ--YELQYVLQDKGVLLTTYDIVRNNSKSLRG 421
           + +W++E+     + K+  Y+G+  + +Q  Y +    ++  V++TTY+   ++S     
Sbjct: 559 IDNWLREVNLWCPTLKVLCYYGSQEERKQIRYNIHSRYEEYNVIVTTYNCAISSS----- 613

Query: 422 SSFISDEAGDDDAIW-----DYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQN 476
                    DD +++     +Y I DEGH++KN  + R + L+ I + +R++++GTP+QN
Sbjct: 614 ---------DDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQN 664

Query: 477 NLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQP 536
           NL EL +L NF  P +   +     +      +  D+ ++  ++RI  A     ++ I+P
Sbjct: 665 NLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKPADEQSIYEKERIAHA-----KQIIKP 719

Query: 537 YFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLN---SEIVLSAFDG 593
           + LRR+K EV  +        L  K + I    ++  Q QLY    N     I     + 
Sbjct: 720 FILRRVKEEVLKQ--------LPPKKDRIELCAMSEKQEQLYMNLFNRLKKSINNMEKNT 771

Query: 594 SPLAALTILKKICDHPLLLTKRAAEDVLDGMDSML---------NP----EDAALAEKLA 640
                +  L+K+ +HPLL  +    + L  M  ++         NP    ED  +     
Sbjct: 772 EMCNVMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFE 831

Query: 641 MHI--ADVAEKDDFQEQHDNI--SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQES 696
           +H+        ++FQ   D I  S K   +  +L +L  +G  V++FSQ   ML++++  
Sbjct: 832 LHVLCKQYRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVL 891

Query: 697 IGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDP 756
           +    +++LR+DG T+ S+R+ ++++F       +FLL+++ GGLG+ LT A+ VI+ D 
Sbjct: 892 LKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDI 951

Query: 757 AWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYR 796
             NP  D Q+ DR +R+GQ K+V+V +L+  GT+EE + +
Sbjct: 952 DCNPYNDKQAEDRCHRVGQTKEVLVIKLIGQGTIEESMLK 991


>sp|O14647|CHD2_HUMAN Chromodomain-helicase-DNA-binding protein 2 OS=Homo sapiens GN=CHD2
           PE=1 SV=2
          Length = 1828

 Score =  233 bits (595), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 165/501 (32%), Positives = 252/501 (50%), Gaps = 75/501 (14%)

Query: 307 HQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHS-RLIKRALVVAPKTLLS 365
           +Q EGL WL    C+    IL D+MGLGKT+Q   FL+ LFH  +L    L+V P + L+
Sbjct: 487 YQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPLSTLT 546

Query: 366 HWIKELTAVGLSAKIREYFGTCVK---TRQYELQYVLQDK---GVLLTTYDIVRNNSKSL 419
            W +E         +  Y G  +     R+YE  +    +     L+TTY+I+  + K++
Sbjct: 547 SWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALITTYEILLKD-KTV 605

Query: 420 RGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLK 479
            GS             W ++ +DE H +KN  +   K+L++  S HR++I+GTP+QN+LK
Sbjct: 606 LGS-----------INWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLK 654

Query: 480 ELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFL 539
           ELW+L +F  PE       F E +E       + H   RE    S     L + ++P+ L
Sbjct: 655 ELWSLLHFIMPEKFE----FWEDFE-------EDHGKGRENGYQS-----LHKVLEPFLL 698

Query: 540 RRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFL--NSEIVLSAFDGSPLA 597
           RR+K +V          +L  K E I+ + +++ Q+Q Y+  L  N + +     GS   
Sbjct: 699 RRVKKDV--------EKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRGSTSG 750

Query: 598 ALTI---LKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQE 654
            L I   LKK C+H  L+      +  +G + +L     +L                   
Sbjct: 751 FLNIVMELKKCCNHCYLIKPPEENERENGQEILL-----SLIRS---------------- 789

Query: 655 QHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKAS 714
                S K+  +  LL +L   G+ VLIFSQ  +ML+++ E +  K Y F R+DG+ K  
Sbjct: 790 -----SGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGE 844

Query: 715 DRVKIVNDFQ-EGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRI 773
            R + ++ F  +G     FLL+++ GGLG+ L  AD V++ D  WNP  D Q+  RA+RI
Sbjct: 845 IRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRI 904

Query: 774 GQKKDVVVYRLMTCGTVEEKI 794
           GQKK V +YRL+T GTVEE+I
Sbjct: 905 GQKKQVNIYRLVTKGTVEEEI 925


>sp|P32597|STH1_YEAST Nuclear protein STH1/NPS1 OS=Saccharomyces cerevisiae (strain ATCC
           204508 / S288c) GN=STH1 PE=1 SV=1
          Length = 1359

 Score =  233 bits (594), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 166/545 (30%), Positives = 273/545 (50%), Gaps = 86/545 (15%)

Query: 300 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRL-IKRALVV 358
           +G  L  +Q  GL W+ SL+     GIL D+MGLGKT+Q    +  L+  +  I   LV+
Sbjct: 466 VGGTLKEYQLRGLEWMVSLYNNHLNGILADEMGLGKTIQSISLITYLYEVKKDIGPFLVI 525

Query: 359 APKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKS 418
            P + +++W  E      S     Y GT  +    + Q  + +  VLLTTY+ +      
Sbjct: 526 VPLSTITNWTLEFEKWAPSLNTIIYKGTPNQRHSLQHQIRVGNFDVLLTTYEYI------ 579

Query: 419 LRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAH------RIIISGT 472
           ++  S +S         W +MI+DEGH +KN     A+S L    +H      R+I++GT
Sbjct: 580 IKDKSLLSKHD------WAHMIIDEGHRMKN-----AQSKLSFTISHYYRTRNRLILTGT 628

Query: 473 PIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRE 532
           P+QNNL ELWAL NF  P++    K F++ +  P      +  L+  +     + + L +
Sbjct: 629 PLQNNLPELWALLNFVLPKIFNSAKTFEDWFNTPFANTGTQEKLELTEEETLLIIRRLHK 688

Query: 533 RIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFL--NSEIVLSA 590
            ++P+ LRRLK EV  E D      L  K E ++  +L+  Q+QLY+  L  N+  V + 
Sbjct: 689 VLRPFLLRRLKKEV--EKD------LPDKVEKVIKCKLSGLQQQLYQQMLKHNALFVGAG 740

Query: 591 FDGSPLAAL-------TILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHI 643
            +G+    +         L+KIC+HP          V D ++ ++NP             
Sbjct: 741 TEGATKGGIKGLNNKIMQLRKICNHPF---------VFDEVEGVVNPSRG---------- 781

Query: 644 ADVAEKDDFQEQHDNISCKISFILSLLDKLIPE----GHNVLIFSQTRKMLNLIQESIGS 699
                       + ++  +++    LLD+++P+    GH VL+F Q  ++++++++ +  
Sbjct: 782 ------------NSDLLFRVAGKFELLDRVLPKFKASGHRVLMFFQMTQVMDIMEDFLRM 829

Query: 700 KGYKFLRIDGTTKASDRVKIVNDFQEGDVAPI-FLLTSQVGGLGLTLTKADRVIVVDPAW 758
           K  K++R+DG+TK  +R +++N F   D     FLL+++ GGLGL L  AD VI+ D  W
Sbjct: 830 KDLKYMRLDGSTKTEERTEMLNAFNAPDSDYFCFLLSTRAGGLGLNLQTADTVIIFDTDW 889

Query: 759 NPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRK---------QIFKGGLFKTAT 809
           NP  D Q+ DRA+RIGQK +V + RL+T  +VEE I  +         ++ + G F   +
Sbjct: 890 NPHQDLQAQDRAHRIGQKNEVRILRLITTDSVEEVILERAMQKLDIDGKVIQAGKFDNKS 949

Query: 810 EHKEQ 814
             +EQ
Sbjct: 950 TAEEQ 954


>sp|Q04692|SMRCD_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A containing DEAD/H box 1 OS=Mus
           musculus GN=Smarcad1 PE=1 SV=2
          Length = 1021

 Score =  233 bits (594), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 153/520 (29%), Positives = 263/520 (50%), Gaps = 54/520 (10%)

Query: 304 LFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTL 363
           L P+Q+ GL WL  +H  G  GIL D+MGLGKT+Q   FLA LF        L+V P + 
Sbjct: 492 LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLFQEGNKGPHLIVVPAST 551

Query: 364 LSHWIKELTAVGLSAKIREYFGTCVKTRQ--YELQYVLQDKGVLLTTYDIVRNNSKSLRG 421
           + +W++E+     S  +  Y+G+  + +Q  + +    +D  V++TTY+   ++S     
Sbjct: 552 IDNWLREVNLWCPSLNVLCYYGSQEERKQIRFNIHNKYEDYNVIVTTYNCAISSS----- 606

Query: 422 SSFISDEAGDDDAIW-----DYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQN 476
                    DD +++     +Y I DEGH++KN  + R + L+ I + +R++++GTP+QN
Sbjct: 607 ---------DDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINARNRLLLTGTPVQN 657

Query: 477 NLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQP 536
           NL EL +L NF  P +   +     +      +  D+ ++  ++RI  A     ++ I+P
Sbjct: 658 NLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKPADEQSIYEKERIAHA-----KQIIKP 712

Query: 537 YFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLN---SEIVLSAFDG 593
           + LRR+K EV           L  K + I    ++  Q QLY    N     I     + 
Sbjct: 713 FILRRVKEEVL--------KLLPPKKDRIELCAMSEKQEQLYSGLFNRLKKSINNLEKNT 764

Query: 594 SPLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDF- 652
                +  L+K+ +HPLL  +    + L  M  ++  E         +   D+    DF 
Sbjct: 765 EMCNVMMQLRKMANHPLLHRQYYTPEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFE 824

Query: 653 ------QEQHDNI----------SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQES 696
                 Q QH N           S K   +  +L +L  +G  V++FSQ   ML++++  
Sbjct: 825 LHVLCKQYQHINSYQLDMDLILDSGKFRALGCILSELKQKGDRVVLFSQFTMMLDILEVL 884

Query: 697 IGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDP 756
           +    +++LR+DG T+ S+R+ ++++F       +FLL+++ GGLG+ LT A+ VI+ D 
Sbjct: 885 LKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDI 944

Query: 757 AWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYR 796
             NP  D Q+ DR +R+GQ K+V+V +L++ GT+EE + +
Sbjct: 945 DCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLK 984


>sp|D3Z9Z9|SMRCD_RAT SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily A containing DEAD/H box 1 OS=Rattus
           norvegicus GN=Smarcad1 PE=3 SV=1
          Length = 1024

 Score =  233 bits (594), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 152/520 (29%), Positives = 263/520 (50%), Gaps = 54/520 (10%)

Query: 304 LFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTL 363
           L P+Q+ GL WL  +H  G  GIL D+MGLGKT+Q   FLA LF        L+V P + 
Sbjct: 495 LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLFQEGNKGPHLIVVPAST 554

Query: 364 LSHWIKELTAVGLSAKIREYFGTCVKTRQ--YELQYVLQDKGVLLTTYDIVRNNSKSLRG 421
           + +W++E+     +  +  Y+G+  + +Q  + +    +D  V++TTY+   ++S     
Sbjct: 555 IDNWLREVNLWCPTLNVLCYYGSQEERKQIRFNIHNKYEDYNVIVTTYNCAISSS----- 609

Query: 422 SSFISDEAGDDDAIW-----DYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQN 476
                    DD +++     +Y I DEGH++KN  + R + L+ I + +R++++GTP+QN
Sbjct: 610 ---------DDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINARNRLLLTGTPVQN 660

Query: 477 NLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQP 536
           NL EL +L NF  P +   +     +      +  D+ ++  ++RI  A     ++ I+P
Sbjct: 661 NLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKPADEQSIYEKERIAHA-----KQIIKP 715

Query: 537 YFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLN---SEIVLSAFDG 593
           + LRR+K EV           L  K + I    ++  Q QLY    N     I     + 
Sbjct: 716 FILRRVKEEVL--------KLLPPKKDQIELCAMSEKQEQLYSGLFNRLKKSINNLEKNT 767

Query: 594 SPLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDF- 652
                +  L+K+ +HPLL  +    + L  M  ++  E         +   D+    DF 
Sbjct: 768 EMCNVMMQLRKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFE 827

Query: 653 ------QEQHDNI----------SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQES 696
                 Q QH N           S K   +  +L +L  +G  V++FSQ   ML++++  
Sbjct: 828 LHVLCKQYQHINSYQLDMDLILDSGKFRTLGCILSELKQKGDRVVLFSQFTMMLDILEVL 887

Query: 697 IGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDP 756
           +    +++LR+DG T+ S+R+ ++++F       +FLL+++ GGLG+ LT A+ VI+ D 
Sbjct: 888 LKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDI 947

Query: 757 AWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYR 796
             NP  D Q+ DR +R+GQ K+V+V +L++ GT+EE + +
Sbjct: 948 DCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLK 987


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.134    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 388,053,808
Number of Sequences: 539616
Number of extensions: 17401006
Number of successful extensions: 44456
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 377
Number of HSP's that attempted gapping in prelim test: 42329
Number of HSP's gapped (non-prelim): 1561
length of query: 1019
length of database: 191,569,459
effective HSP length: 128
effective length of query: 891
effective length of database: 122,498,611
effective search space: 109146262401
effective search space used: 109146262401
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 66 (30.0 bits)