Query 001731
Match_columns 1019
No_of_seqs 519 out of 2564
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 07:58:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001731.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001731hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0387 Transcription-coupled 100.0 8E-125 2E-129 1078.9 48.0 688 280-1015 182-888 (923)
2 KOG0385 Chromatin remodeling c 100.0 4.4E-93 9.5E-98 812.1 40.6 475 296-831 159-646 (971)
3 KOG0391 SNF2 family DNA-depend 100.0 2E-89 4.3E-94 798.2 37.0 520 287-831 599-1431(1958)
4 KOG0392 SNF2 family DNA-depend 100.0 3.1E-87 6.7E-92 791.0 41.4 496 292-829 964-1496(1549)
5 KOG0389 SNF2 family DNA-depend 100.0 1.3E-85 2.9E-90 754.0 38.7 491 303-814 399-914 (941)
6 KOG0384 Chromodomain-helicase 100.0 3.5E-84 7.6E-89 770.1 38.0 479 297-833 363-862 (1373)
7 PLN03142 Probable chromatin-re 100.0 1.2E-82 2.6E-87 787.0 49.1 476 295-831 161-644 (1033)
8 KOG1015 Transcription regulato 100.0 6.6E-82 1.4E-86 725.5 33.4 584 293-891 658-1373(1567)
9 KOG0388 SNF2 family DNA-depend 100.0 7.5E-81 1.6E-85 701.1 31.8 487 292-811 556-1177(1185)
10 KOG0390 DNA repair protein, SN 100.0 6E-78 1.3E-82 713.4 40.4 505 292-832 227-752 (776)
11 KOG0386 Chromatin remodeling c 100.0 1E-76 2.3E-81 694.7 28.2 460 301-811 392-861 (1157)
12 KOG1002 Nucleotide excision re 100.0 1.2E-71 2.6E-76 608.2 40.8 515 294-828 175-790 (791)
13 KOG4439 RNA polymerase II tran 100.0 3.4E-70 7.4E-75 619.2 36.8 518 287-829 309-901 (901)
14 KOG1016 Predicted DNA helicase 100.0 4.1E-69 8.8E-74 609.4 27.7 531 292-831 243-892 (1387)
15 COG0553 HepA Superfamily II DN 100.0 2.7E-62 5.9E-67 623.7 37.1 492 298-829 333-865 (866)
16 KOG1000 Chromatin remodeling p 100.0 3.3E-55 7.1E-60 480.9 31.5 432 295-814 190-629 (689)
17 PRK04914 ATP-dependent helicas 100.0 1.5E-54 3.2E-59 536.1 33.1 441 300-814 149-631 (956)
18 KOG1001 Helicase-like transcri 100.0 6.4E-52 1.4E-56 495.9 27.6 471 306-811 135-673 (674)
19 KOG0383 Predicted helicase [Ge 100.0 8E-44 1.7E-48 419.9 10.1 378 302-742 294-696 (696)
20 TIGR00603 rad25 DNA repair hel 100.0 1E-38 2.2E-43 383.3 35.9 353 301-796 253-615 (732)
21 PF00176 SNF2_N: SNF2 family N 100.0 1E-39 2.2E-44 364.4 21.2 272 307-612 1-299 (299)
22 PRK13766 Hef nuclease; Provisi 100.0 2.3E-35 5E-40 371.0 37.3 463 303-806 15-497 (773)
23 COG1111 MPH1 ERCC4-like helica 100.0 8.5E-33 1.8E-37 309.1 35.6 460 303-809 15-502 (542)
24 KOG0298 DEAD box-containing he 100.0 1.5E-33 3.2E-38 339.4 20.1 268 322-612 374-691 (1394)
25 COG1061 SSL2 DNA or RNA helica 100.0 2.6E-28 5.6E-33 286.2 33.6 369 299-800 32-406 (442)
26 PHA02558 uvsW UvsW helicase; P 100.0 3.4E-28 7.3E-33 290.5 34.4 339 302-789 113-456 (501)
27 KOG1123 RNA polymerase II tran 100.0 1.9E-29 4.1E-34 278.1 18.6 359 293-794 292-659 (776)
28 KOG0354 DEAD-box like helicase 100.0 2.3E-27 4.9E-32 280.1 35.8 468 303-827 62-564 (746)
29 PTZ00110 helicase; Provisional 100.0 1E-26 2.3E-31 279.7 33.0 322 302-788 151-484 (545)
30 TIGR00614 recQ_fam ATP-depende 100.0 6.6E-27 1.4E-31 277.8 29.0 310 302-782 10-329 (470)
31 PRK04837 ATP-dependent RNA hel 100.0 2.4E-26 5.3E-31 269.9 29.7 316 303-787 30-361 (423)
32 PRK10590 ATP-dependent RNA hel 99.9 3.2E-26 6.9E-31 271.1 29.9 313 302-781 22-347 (456)
33 PRK11776 ATP-dependent RNA hel 99.9 5.6E-26 1.2E-30 269.7 30.7 317 302-788 25-349 (460)
34 PLN00206 DEAD-box ATP-dependen 99.9 5.5E-26 1.2E-30 272.6 30.6 318 302-788 142-475 (518)
35 PRK11192 ATP-dependent RNA hel 99.9 8.4E-26 1.8E-30 266.3 31.2 315 302-781 22-347 (434)
36 PRK04537 ATP-dependent RNA hel 99.9 8.3E-26 1.8E-30 272.9 31.1 314 302-781 30-359 (572)
37 PRK01297 ATP-dependent RNA hel 99.9 1.9E-25 4.1E-30 266.0 31.1 312 302-780 108-436 (475)
38 TIGR01389 recQ ATP-dependent D 99.9 2E-25 4.3E-30 272.5 30.3 304 303-781 13-326 (591)
39 PRK11057 ATP-dependent DNA hel 99.9 1.9E-25 4.2E-30 272.2 29.5 304 303-781 25-338 (607)
40 PRK11634 ATP-dependent RNA hel 99.9 6.5E-25 1.4E-29 266.8 31.2 312 302-781 27-347 (629)
41 PTZ00424 helicase 45; Provisio 99.9 6.2E-25 1.3E-29 256.3 29.8 318 302-788 49-374 (401)
42 PLN03137 ATP-dependent DNA hel 99.9 2.9E-25 6.4E-30 273.0 27.9 315 301-783 458-784 (1195)
43 KOG0331 ATP-dependent RNA heli 99.9 2.9E-25 6.3E-30 255.5 25.4 315 303-780 113-442 (519)
44 KOG0330 ATP-dependent RNA heli 99.9 2E-25 4.3E-30 241.5 21.7 322 302-791 82-410 (476)
45 COG0513 SrmB Superfamily II DN 99.9 2E-22 4.3E-27 240.6 31.8 331 303-800 51-391 (513)
46 TIGR03817 DECH_helic helicase/ 99.9 2.2E-22 4.9E-27 249.1 32.6 338 302-795 35-393 (742)
47 TIGR00643 recG ATP-dependent D 99.9 2.7E-22 5.9E-27 245.7 31.8 307 300-781 232-561 (630)
48 PRK10917 ATP-dependent DNA hel 99.9 4.4E-22 9.5E-27 245.5 31.4 305 300-780 258-583 (681)
49 PRK11448 hsdR type I restricti 99.9 5.6E-22 1.2E-26 252.1 32.0 361 302-785 412-815 (1123)
50 TIGR00580 mfd transcription-re 99.9 4E-22 8.6E-27 249.3 30.0 308 300-787 448-769 (926)
51 COG0514 RecQ Superfamily II DN 99.9 7.6E-23 1.6E-27 239.7 21.6 314 302-790 16-339 (590)
52 PRK13767 ATP-dependent helicas 99.9 6.7E-22 1.5E-26 249.5 31.8 109 673-783 280-395 (876)
53 KOG0350 DEAD-box ATP-dependent 99.9 3.9E-22 8.3E-27 221.8 22.4 371 300-802 156-552 (620)
54 PRK10689 transcription-repair 99.9 4.4E-21 9.5E-26 244.8 33.7 306 300-780 597-913 (1147)
55 PRK02362 ski2-like helicase; P 99.9 4.7E-21 1E-25 239.4 28.4 318 302-787 22-396 (737)
56 KOG0338 ATP-dependent RNA heli 99.9 2E-21 4.4E-26 216.0 15.8 325 303-796 203-539 (691)
57 KOG0333 U5 snRNP-like RNA heli 99.9 1.5E-20 3.3E-25 210.0 21.5 124 659-788 501-624 (673)
58 TIGR03714 secA2 accessory Sec 99.9 8.9E-20 1.9E-24 220.3 29.7 128 659-796 406-542 (762)
59 PRK01172 ski2-like helicase; P 99.9 5.2E-20 1.1E-24 228.3 27.9 312 303-785 22-375 (674)
60 KOG0328 Predicted ATP-dependen 99.9 6.2E-21 1.3E-25 198.8 16.1 316 306-788 52-373 (400)
61 KOG0335 ATP-dependent RNA heli 99.9 3.1E-20 6.7E-25 210.8 21.3 316 302-782 95-440 (482)
62 PRK00254 ski2-like helicase; P 99.8 2.4E-19 5.2E-24 223.5 31.4 319 302-788 22-388 (720)
63 TIGR01587 cas3_core CRISPR-ass 99.8 2.2E-19 4.8E-24 206.5 28.4 121 662-788 208-338 (358)
64 KOG0342 ATP-dependent RNA heli 99.8 3.1E-20 6.7E-25 207.2 18.0 312 303-778 104-429 (543)
65 KOG0348 ATP-dependent RNA heli 99.8 1.5E-19 3.3E-24 202.4 21.8 125 663-791 409-557 (708)
66 KOG0343 RNA Helicase [RNA proc 99.8 2.3E-19 5E-24 201.3 22.6 331 303-801 91-434 (758)
67 KOG0340 ATP-dependent RNA heli 99.8 4.1E-19 8.9E-24 190.8 21.2 318 303-779 29-354 (442)
68 TIGR02621 cas3_GSU0051 CRISPR- 99.8 2.2E-18 4.8E-23 210.3 29.5 99 676-779 271-383 (844)
69 TIGR00348 hsdR type I site-spe 99.8 6.3E-18 1.4E-22 207.9 31.1 159 302-476 237-405 (667)
70 KOG0345 ATP-dependent RNA heli 99.8 2.8E-18 6E-23 190.3 23.1 312 303-782 28-360 (567)
71 KOG0347 RNA helicase [RNA proc 99.8 3.8E-20 8.3E-25 207.6 7.8 98 677-776 463-560 (731)
72 KOG0351 ATP-dependent DNA heli 99.8 5.9E-19 1.3E-23 218.2 17.8 318 302-786 263-592 (941)
73 PRK12898 secA preprotein trans 99.8 2.1E-17 4.5E-22 197.9 30.0 130 659-797 455-592 (656)
74 PRK09200 preprotein translocas 99.8 1.3E-17 2.9E-22 203.5 28.5 130 659-797 410-547 (790)
75 COG4096 HsdR Type I site-speci 99.8 1.2E-18 2.7E-23 205.8 18.3 347 294-773 156-525 (875)
76 PRK09751 putative ATP-dependen 99.8 1.9E-17 4E-22 212.8 29.5 96 676-773 243-371 (1490)
77 COG1201 Lhr Lhr-like helicases 99.8 1.5E-17 3.3E-22 202.0 27.1 338 301-802 20-374 (814)
78 PRK09401 reverse gyrase; Revie 99.8 1.5E-17 3.3E-22 213.0 27.5 104 662-774 316-432 (1176)
79 TIGR00963 secA preprotein tran 99.8 1.4E-17 3E-22 200.3 24.8 118 660-781 388-512 (745)
80 PHA02653 RNA helicase NPH-II; 99.8 3.3E-17 7.1E-22 199.1 26.4 108 676-790 394-516 (675)
81 KOG0344 ATP-dependent RNA heli 99.8 2.3E-17 5E-22 188.5 21.0 117 659-779 371-488 (593)
82 COG1205 Distinct helicase fami 99.8 3.9E-17 8.4E-22 203.5 24.5 335 303-796 70-430 (851)
83 COG1200 RecG RecG-like helicas 99.8 1.3E-16 2.7E-21 187.1 26.8 305 300-780 259-585 (677)
84 TIGR03158 cas3_cyano CRISPR-as 99.8 1.6E-16 3.4E-21 182.4 27.2 85 676-771 271-357 (357)
85 KOG4284 DEAD box protein [Tran 99.8 1.4E-17 3.1E-22 189.5 17.4 312 306-778 50-371 (980)
86 KOG0336 ATP-dependent RNA heli 99.7 6.8E-17 1.5E-21 175.8 20.7 309 303-779 242-565 (629)
87 KOG0339 ATP-dependent RNA heli 99.7 6.4E-17 1.4E-21 180.2 20.8 126 661-791 453-578 (731)
88 KOG0352 ATP-dependent DNA heli 99.7 8.2E-17 1.8E-21 176.1 20.2 321 306-783 23-359 (641)
89 KOG0326 ATP-dependent RNA heli 99.7 4.9E-18 1.1E-22 179.8 8.7 311 303-786 107-427 (459)
90 TIGR01054 rgy reverse gyrase. 99.7 3.2E-16 6.9E-21 201.3 23.0 131 300-449 75-213 (1171)
91 PRK14701 reverse gyrase; Provi 99.7 7.5E-16 1.6E-20 201.5 26.6 105 665-779 321-449 (1638)
92 PRK05580 primosome assembly pr 99.7 2.4E-15 5.1E-20 185.4 28.5 152 302-474 143-305 (679)
93 TIGR01970 DEAH_box_HrpB ATP-de 99.7 7.6E-16 1.7E-20 191.3 23.4 108 677-789 209-337 (819)
94 KOG0353 ATP-dependent DNA heli 99.7 9.1E-17 2E-21 172.9 12.9 321 303-786 94-467 (695)
95 COG1202 Superfamily II helicas 99.7 7.6E-16 1.6E-20 174.1 19.9 316 301-788 214-553 (830)
96 KOG0332 ATP-dependent RNA heli 99.7 1.5E-15 3.3E-20 164.5 20.2 121 662-788 317-443 (477)
97 KOG0341 DEAD-box protein abstr 99.7 1.2E-16 2.7E-21 172.7 11.5 128 660-794 407-534 (610)
98 cd00079 HELICc Helicase superf 99.7 2.3E-16 5.1E-21 153.5 12.4 120 661-782 12-131 (131)
99 COG1204 Superfamily II helicas 99.7 1.5E-15 3.3E-20 186.9 22.3 311 303-775 31-395 (766)
100 COG4889 Predicted helicase [Ge 99.7 1.8E-16 3.9E-21 184.9 13.1 167 293-473 151-350 (1518)
101 PRK13104 secA preprotein trans 99.7 7.9E-15 1.7E-19 178.9 27.9 121 659-783 426-584 (896)
102 PF04851 ResIII: Type III rest 99.7 1.8E-16 3.9E-21 163.6 11.2 165 303-474 3-183 (184)
103 PRK11664 ATP-dependent RNA hel 99.7 4.4E-15 9.5E-20 185.0 24.1 110 676-790 211-341 (812)
104 KOG0346 RNA helicase [RNA proc 99.7 1.7E-15 3.6E-20 167.0 17.9 311 306-783 44-407 (569)
105 KOG0334 RNA helicase [RNA proc 99.7 3.1E-15 6.7E-20 181.0 21.7 123 660-787 597-719 (997)
106 PRK12906 secA preprotein trans 99.7 1.2E-14 2.6E-19 176.5 26.0 119 659-781 422-548 (796)
107 TIGR00595 priA primosomal prot 99.6 2.4E-14 5.2E-19 170.7 26.6 94 690-785 271-380 (505)
108 COG1197 Mfd Transcription-repa 99.6 4.5E-14 9.8E-19 174.1 29.3 311 300-787 591-912 (1139)
109 PRK09694 helicase Cas3; Provis 99.6 3.3E-14 7.1E-19 176.9 27.5 100 674-776 557-665 (878)
110 PRK13107 preprotein translocas 99.6 2.7E-13 5.8E-18 165.1 32.0 120 659-782 431-587 (908)
111 PRK12904 preprotein translocas 99.6 7.1E-14 1.5E-18 170.6 26.7 120 659-782 412-569 (830)
112 COG4098 comFA Superfamily II D 99.6 6.2E-13 1.3E-17 143.3 26.9 309 302-786 96-414 (441)
113 KOG0337 ATP-dependent RNA heli 99.6 2.6E-14 5.7E-19 157.1 15.5 319 302-788 42-368 (529)
114 smart00487 DEXDc DEAD-like hel 99.6 3.9E-14 8.4E-19 146.7 16.1 159 301-476 6-173 (201)
115 PRK11131 ATP-dependent RNA hel 99.6 1.4E-13 3E-18 174.7 23.9 108 676-790 285-413 (1294)
116 PF00271 Helicase_C: Helicase 99.6 6.3E-15 1.4E-19 131.0 7.0 78 695-774 1-78 (78)
117 KOG0327 Translation initiation 99.5 3.3E-14 7.1E-19 155.8 13.3 119 662-788 252-370 (397)
118 cd00046 DEXDc DEAD-like helica 99.5 8.6E-14 1.9E-18 135.7 12.8 139 323-473 1-144 (144)
119 TIGR01967 DEAH_box_HrpA ATP-de 99.5 3.2E-13 7E-18 172.0 20.0 110 676-792 278-408 (1283)
120 TIGR00631 uvrb excinuclease AB 99.5 1.9E-11 4.1E-16 149.5 33.8 126 659-789 424-554 (655)
121 KOG0952 DNA/RNA helicase MER3/ 99.5 1.5E-12 3.3E-17 156.6 23.5 302 319-778 123-481 (1230)
122 PRK12900 secA preprotein trans 99.5 1.2E-11 2.7E-16 151.3 29.8 118 659-780 580-705 (1025)
123 PRK12899 secA preprotein trans 99.4 1E-10 2.2E-15 143.1 30.7 119 659-782 550-677 (970)
124 smart00490 HELICc helicase sup 99.4 6.1E-13 1.3E-17 118.2 8.0 81 692-774 2-82 (82)
125 cd00268 DEADc DEAD-box helicas 99.4 4.1E-12 8.8E-17 134.1 15.5 156 303-474 21-185 (203)
126 PRK12326 preprotein translocas 99.4 9.8E-11 2.1E-15 140.0 28.3 120 659-782 409-543 (764)
127 PF00270 DEAD: DEAD/DEAH box h 99.4 6E-12 1.3E-16 128.4 15.0 158 306-479 2-167 (169)
128 PRK05298 excinuclease ABC subu 99.4 1.2E-09 2.6E-14 134.6 37.5 125 659-788 428-557 (652)
129 COG1203 CRISPR-associated heli 99.4 3.9E-11 8.5E-16 149.6 24.0 129 673-804 436-568 (733)
130 PRK13103 secA preprotein trans 99.2 2.5E-09 5.3E-14 131.2 27.8 121 659-783 431-588 (913)
131 PRK12903 secA preprotein trans 99.2 4.2E-09 9.2E-14 127.8 26.7 119 659-782 408-535 (925)
132 KOG0947 Cytoplasmic exosomal R 99.2 8.9E-09 1.9E-13 123.4 28.1 144 303-473 297-444 (1248)
133 COG0556 UvrB Helicase subunit 99.2 4E-09 8.6E-14 120.2 24.0 131 662-795 431-566 (663)
134 KOG0951 RNA helicase BRR2, DEA 99.2 8.6E-10 1.9E-14 134.8 19.8 72 701-774 607-688 (1674)
135 KOG0329 ATP-dependent RNA heli 99.2 5.1E-10 1.1E-14 116.2 15.2 127 306-448 67-198 (387)
136 PF13872 AAA_34: P-loop contai 99.1 5.1E-10 1.1E-14 122.1 14.1 258 285-580 17-302 (303)
137 TIGR01407 dinG_rel DnaQ family 99.1 1.6E-08 3.4E-13 128.9 26.8 78 676-758 673-756 (850)
138 COG1110 Reverse gyrase [DNA re 99.0 5.4E-08 1.2E-12 118.3 24.0 129 300-447 79-215 (1187)
139 CHL00122 secA preprotein trans 99.0 9.3E-08 2E-12 117.1 24.9 84 659-745 406-490 (870)
140 TIGR00596 rad1 DNA repair prot 98.9 1.8E-08 3.9E-13 125.2 18.9 94 398-501 4-102 (814)
141 COG4581 Superfamily II RNA hel 98.9 6.9E-08 1.5E-12 120.3 20.8 149 300-473 116-270 (1041)
142 PF11496 HDA2-3: Class II hist 98.8 6E-08 1.3E-12 107.8 16.5 211 562-799 4-256 (297)
143 KOG0948 Nuclear exosomal RNA h 98.8 5.7E-08 1.2E-12 114.1 16.7 145 302-473 128-276 (1041)
144 COG0610 Type I site-specific r 98.8 9.3E-08 2E-12 122.0 20.4 158 305-477 250-417 (962)
145 COG1198 PriA Primosomal protei 98.8 1.6E-07 3.4E-12 114.8 21.4 153 302-474 197-360 (730)
146 PRK12901 secA preprotein trans 98.8 8.3E-07 1.8E-11 109.7 26.9 119 659-782 610-737 (1112)
147 KOG0349 Putative DEAD-box RNA 98.8 3.7E-08 8E-13 109.0 13.6 97 676-774 504-603 (725)
148 PRK12902 secA preprotein trans 98.8 1.7E-06 3.7E-11 106.1 28.6 84 659-745 421-505 (939)
149 TIGR00604 rad3 DNA repair heli 98.8 6.8E-07 1.5E-11 111.9 25.6 70 304-373 11-82 (705)
150 KOG0949 Predicted helicase, DE 98.8 3E-07 6.6E-12 110.8 20.6 164 306-486 514-682 (1330)
151 KOG1513 Nuclear helicase MOP-3 98.8 1.3E-07 2.8E-12 111.2 16.7 200 292-500 253-477 (1300)
152 KOG0950 DNA polymerase theta/e 98.7 1.5E-07 3.2E-12 114.1 16.1 69 703-774 524-597 (1008)
153 COG1643 HrpA HrpA-like helicas 98.6 1.5E-06 3.3E-11 107.8 20.1 110 677-791 259-390 (845)
154 PRK08074 bifunctional ATP-depe 98.6 4.2E-05 9.1E-10 98.5 32.4 95 665-761 739-839 (928)
155 TIGR03117 cas_csf4 CRISPR-asso 98.5 5.8E-05 1.3E-09 91.9 29.6 68 308-375 2-70 (636)
156 PRK07246 bifunctional ATP-depe 98.5 4.7E-05 1E-09 96.5 29.8 88 666-758 636-725 (820)
157 KOG0924 mRNA splicing factor A 98.5 2.5E-06 5.4E-11 99.6 16.4 130 678-809 564-721 (1042)
158 KOG0922 DEAH-box RNA helicase 98.5 9.6E-06 2.1E-10 95.8 21.0 112 677-790 258-392 (674)
159 PRK15483 type III restriction- 98.4 2.5E-06 5.4E-11 106.4 16.1 146 324-474 61-239 (986)
160 KOG0920 ATP-dependent RNA heli 98.4 1.9E-05 4E-10 98.1 22.9 122 662-788 396-544 (924)
161 PF07652 Flavi_DEAD: Flaviviru 98.4 2.1E-06 4.5E-11 84.3 10.9 129 322-474 4-137 (148)
162 COG1199 DinG Rad3-related DNA 98.4 3.9E-05 8.5E-10 95.8 24.9 101 676-780 478-611 (654)
163 COG0653 SecA Preprotein transl 98.2 0.00019 4.1E-09 88.3 24.0 114 659-776 411-535 (822)
164 smart00489 DEXDc3 DEAD-like he 98.1 2.8E-05 6.2E-10 86.9 14.1 71 304-374 9-84 (289)
165 smart00488 DEXDc2 DEAD-like he 98.1 2.8E-05 6.2E-10 86.9 14.1 71 304-374 9-84 (289)
166 KOG4150 Predicted ATP-dependen 98.1 3.3E-05 7.1E-10 88.7 14.1 115 660-776 508-630 (1034)
167 PF02399 Herpes_ori_bp: Origin 98.1 0.00019 4.2E-09 87.7 21.4 99 675-782 280-384 (824)
168 PF13871 Helicase_C_4: Helicas 98.1 5.6E-06 1.2E-10 90.6 7.3 94 718-813 52-153 (278)
169 TIGR02562 cas3_yersinia CRISPR 98.1 0.0014 3E-08 82.4 27.9 46 729-777 838-883 (1110)
170 KOG0923 mRNA splicing factor A 97.9 0.00047 1E-08 81.2 18.4 107 677-790 473-608 (902)
171 PF13086 AAA_11: AAA domain; P 97.9 0.00013 2.9E-09 77.9 13.4 67 303-373 1-75 (236)
172 KOG0953 Mitochondrial RNA heli 97.9 3.1E-05 6.7E-10 89.4 8.2 100 676-778 357-466 (700)
173 KOG0925 mRNA splicing factor A 97.9 0.00058 1.3E-08 77.9 17.7 108 678-791 254-390 (699)
174 KOG0926 DEAH-box RNA helicase 97.8 0.00022 4.7E-09 85.3 14.0 78 705-787 608-703 (1172)
175 PF02562 PhoH: PhoH-like prote 97.8 0.00013 2.7E-09 77.0 10.3 149 304-479 5-161 (205)
176 PRK10536 hypothetical protein; 97.6 0.00034 7.4E-09 75.8 9.8 147 304-477 60-216 (262)
177 COG3587 Restriction endonuclea 97.3 0.00096 2.1E-08 81.0 10.2 147 324-473 76-242 (985)
178 PF07517 SecA_DEAD: SecA DEAD- 97.2 0.0042 9.1E-08 68.3 12.8 132 300-447 74-209 (266)
179 KOG1803 DNA helicase [Replicat 97.1 0.0026 5.6E-08 75.1 10.7 67 299-370 181-248 (649)
180 PF13604 AAA_30: AAA domain; P 96.9 0.015 3.3E-07 61.3 13.9 131 303-475 1-132 (196)
181 PRK14873 primosome assembly pr 96.7 0.0085 1.8E-07 74.2 11.9 125 331-474 169-304 (665)
182 PF13307 Helicase_C_2: Helicas 96.7 0.0036 7.8E-08 64.3 6.7 77 676-758 8-92 (167)
183 PF09848 DUF2075: Uncharacteri 96.6 0.0069 1.5E-07 69.9 9.5 47 326-372 5-52 (352)
184 KOG1131 RNA polymerase II tran 96.5 0.0066 1.4E-07 70.1 8.3 61 302-362 15-76 (755)
185 KOG1802 RNA helicase nonsense 96.5 0.026 5.7E-07 67.1 12.8 68 303-375 410-478 (935)
186 KOG1132 Helicase of the DEAD s 96.4 0.016 3.5E-07 71.1 10.8 47 295-341 13-59 (945)
187 TIGR01447 recD exodeoxyribonuc 96.4 0.023 5E-07 69.6 12.3 146 306-475 148-297 (586)
188 TIGR00376 DNA helicase, putati 96.3 0.051 1.1E-06 67.5 15.0 67 302-373 156-223 (637)
189 PF13401 AAA_22: AAA domain; P 96.2 0.01 2.2E-07 57.6 6.8 35 437-473 89-125 (131)
190 TIGR01448 recD_rel helicase, p 96.2 0.04 8.7E-07 69.4 13.1 136 300-476 320-455 (720)
191 COG0553 HepA Superfamily II DN 96.0 0.0034 7.5E-08 80.9 2.9 185 301-495 82-289 (866)
192 PRK11747 dinG ATP-dependent DN 96.0 0.067 1.5E-06 67.2 14.1 88 665-758 522-616 (697)
193 PRK10875 recD exonuclease V su 95.7 0.041 8.9E-07 67.7 10.0 147 304-475 153-303 (615)
194 PF12340 DUF3638: Protein of u 95.7 0.041 8.9E-07 58.9 8.5 110 303-414 23-143 (229)
195 PRK11747 dinG ATP-dependent DN 95.2 0.11 2.4E-06 65.4 11.7 62 303-365 25-91 (697)
196 cd00009 AAA The AAA+ (ATPases 95.0 0.21 4.4E-06 48.4 10.6 42 322-365 19-60 (151)
197 COG3421 Uncharacterized protei 94.9 0.026 5.6E-07 66.5 4.5 115 328-447 3-124 (812)
198 COG1875 NYN ribonuclease and A 94.8 0.099 2.2E-06 58.9 8.5 57 305-363 230-287 (436)
199 KOG1805 DNA replication helica 94.8 0.27 6E-06 61.3 12.8 155 294-475 656-831 (1100)
200 KOG0951 RNA helicase BRR2, DEA 94.5 0.13 2.8E-06 65.5 9.2 110 319-452 1156-1270(1674)
201 PRK04296 thymidine kinase; Pro 94.5 0.083 1.8E-06 55.4 6.7 34 325-360 5-38 (190)
202 PRK12723 flagellar biosynthesi 94.1 0.44 9.5E-06 55.5 12.1 55 436-490 255-314 (388)
203 smart00382 AAA ATPases associa 94.0 0.19 4E-06 48.1 7.8 44 323-368 3-46 (148)
204 PLN03025 replication factor C 94.0 0.47 1E-05 54.0 12.2 41 308-348 18-60 (319)
205 PHA02533 17 large terminase pr 93.8 0.12 2.7E-06 62.6 7.4 56 302-361 58-113 (534)
206 TIGR03015 pepcterm_ATPase puta 93.8 0.32 6.9E-06 53.5 10.0 42 305-346 25-67 (269)
207 smart00492 HELICc3 helicase su 93.6 0.35 7.7E-06 48.2 8.9 53 704-758 25-79 (141)
208 PF06862 DUF1253: Protein of u 92.9 1.1 2.3E-05 52.9 12.6 111 676-787 299-414 (442)
209 TIGR02881 spore_V_K stage V sp 92.8 0.44 9.4E-06 52.6 9.1 26 324-349 44-69 (261)
210 PF13245 AAA_19: Part of AAA d 92.8 0.3 6.5E-06 43.3 6.2 41 325-365 13-55 (76)
211 PRK12402 replication factor C 92.8 0.33 7.1E-06 55.4 8.3 42 308-349 20-63 (337)
212 PRK05703 flhF flagellar biosyn 92.7 0.97 2.1E-05 53.5 12.3 55 436-490 300-359 (424)
213 PF05876 Terminase_GpA: Phage 92.7 0.2 4.4E-06 61.3 6.7 173 295-486 8-192 (557)
214 KOG0952 DNA/RNA helicase MER3/ 92.6 0.12 2.6E-06 64.7 4.7 117 319-450 940-1061(1230)
215 smart00491 HELICc2 helicase su 92.6 0.43 9.4E-06 47.6 7.8 68 690-758 4-80 (142)
216 KOG0442 Structure-specific end 92.5 2.8 6E-05 52.1 15.6 184 303-510 13-203 (892)
217 PF00448 SRP54: SRP54-type pro 92.2 0.47 1E-05 50.0 8.0 134 326-490 5-142 (196)
218 PRK09112 DNA polymerase III su 91.9 0.59 1.3E-05 53.9 8.9 42 308-349 28-72 (351)
219 PRK14956 DNA polymerase III su 91.8 0.89 1.9E-05 54.2 10.4 42 307-348 22-66 (484)
220 PRK06526 transposase; Provisio 91.3 0.58 1.3E-05 51.5 7.7 52 311-372 91-142 (254)
221 TIGR02768 TraA_Ti Ti-type conj 91.3 1.4 3E-05 56.0 12.1 59 302-365 351-409 (744)
222 PRK08769 DNA polymerase III su 91.2 1.7 3.7E-05 49.4 11.6 51 300-350 1-54 (319)
223 TIGR02880 cbbX_cfxQ probable R 90.8 0.79 1.7E-05 51.3 8.4 27 324-350 60-86 (284)
224 PRK05707 DNA polymerase III su 90.8 0.98 2.1E-05 51.6 9.2 48 303-350 3-50 (328)
225 PRK08116 hypothetical protein; 90.0 2 4.3E-05 47.7 10.6 46 322-369 114-159 (268)
226 PRK08181 transposase; Validate 90.0 2.2 4.7E-05 47.4 10.8 54 304-359 88-141 (269)
227 CHL00181 cbbX CbbX; Provisiona 89.7 1 2.2E-05 50.5 8.1 41 325-365 62-104 (287)
228 PRK11889 flhF flagellar biosyn 89.7 3.2 6.9E-05 48.3 12.0 126 326-489 245-378 (436)
229 PRK07003 DNA polymerase III su 89.6 2 4.4E-05 53.6 11.0 41 308-348 21-64 (830)
230 PRK14722 flhF flagellar biosyn 89.3 2.8 6.1E-05 48.6 11.4 39 324-362 139-177 (374)
231 PRK14974 cell division protein 89.1 3.5 7.5E-05 47.3 11.9 46 326-373 144-193 (336)
232 PRK14087 dnaA chromosomal repl 89.1 2.2 4.7E-05 51.0 10.6 49 323-371 142-190 (450)
233 PRK00149 dnaA chromosomal repl 89.0 1.8 3.9E-05 51.7 10.0 49 323-371 149-197 (450)
234 PRK14949 DNA polymerase III su 88.9 1.2 2.5E-05 56.7 8.3 41 308-348 21-64 (944)
235 TIGR00362 DnaA chromosomal rep 88.8 1.9 4.1E-05 50.8 9.9 42 324-365 138-179 (405)
236 PRK06645 DNA polymerase III su 88.8 2.1 4.5E-05 51.8 10.2 42 308-349 26-70 (507)
237 PHA03372 DNA packaging termina 88.2 0.86 1.9E-05 55.0 6.3 130 321-472 202-336 (668)
238 PRK12323 DNA polymerase III su 88.2 5.3 0.00012 49.3 13.0 25 324-348 40-64 (700)
239 KOG0989 Replication factor C, 87.9 2.5 5.5E-05 47.0 9.1 42 307-348 40-83 (346)
240 PHA03368 DNA packaging termina 87.7 1.2 2.6E-05 54.5 7.1 146 323-491 255-419 (738)
241 PRK13889 conjugal transfer rel 87.5 3.8 8.3E-05 53.3 12.0 59 302-365 345-403 (988)
242 PRK14963 DNA polymerase III su 87.3 3.2 7E-05 50.3 10.6 43 308-350 19-64 (504)
243 TIGR03420 DnaA_homol_Hda DnaA 87.2 3.1 6.6E-05 44.4 9.5 27 322-348 38-64 (226)
244 PRK14961 DNA polymerase III su 87.0 3.1 6.7E-05 48.3 10.0 40 308-347 21-63 (363)
245 COG1484 DnaC DNA replication p 86.7 2.3 5.1E-05 46.7 8.3 50 320-371 103-152 (254)
246 PF00580 UvrD-helicase: UvrD/R 86.3 1.4 3.1E-05 49.1 6.7 63 304-372 1-66 (315)
247 PF13177 DNA_pol3_delta2: DNA 86.2 4.7 0.0001 41.1 9.7 47 308-354 2-51 (162)
248 PRK08084 DNA replication initi 86.1 4.9 0.00011 43.6 10.4 25 323-347 46-70 (235)
249 PRK14948 DNA polymerase III su 86.1 4.1 9E-05 50.6 10.9 43 307-349 20-65 (620)
250 PRK07993 DNA polymerase III su 86.0 4.6 0.0001 46.3 10.6 48 303-350 2-52 (334)
251 PRK14962 DNA polymerase III su 86.0 4 8.7E-05 49.0 10.4 24 325-348 39-62 (472)
252 PRK06964 DNA polymerase III su 86.0 4.8 0.0001 46.2 10.6 47 304-350 2-49 (342)
253 PRK05580 primosome assembly pr 85.9 3.9 8.4E-05 51.5 10.7 95 659-756 172-267 (679)
254 PRK14960 DNA polymerase III su 85.6 6.3 0.00014 48.8 11.8 41 308-348 20-63 (702)
255 PRK06871 DNA polymerase III su 85.4 4.5 9.7E-05 46.2 10.0 47 304-350 3-52 (325)
256 PRK07994 DNA polymerase III su 85.2 5.4 0.00012 49.6 11.2 42 308-349 21-65 (647)
257 TIGR00595 priA primosomal prot 85.1 7.8 0.00017 47.1 12.4 95 658-755 6-101 (505)
258 PRK14958 DNA polymerase III su 85.1 8.9 0.00019 46.6 12.9 42 308-349 21-65 (509)
259 PRK08451 DNA polymerase III su 84.9 3.9 8.6E-05 49.6 9.7 42 308-349 19-63 (535)
260 PRK14088 dnaA chromosomal repl 84.8 9.9 0.00021 45.4 12.9 40 324-363 132-171 (440)
261 PRK08727 hypothetical protein; 84.7 4.1 8.8E-05 44.2 8.9 26 324-349 43-68 (233)
262 COG3267 ExeA Type II secretory 84.6 6.1 0.00013 43.0 9.8 70 300-373 29-105 (269)
263 PRK07940 DNA polymerase III su 84.4 3.8 8.1E-05 48.1 9.0 26 324-349 38-63 (394)
264 TIGR02928 orc1/cdc6 family rep 84.4 9.3 0.0002 44.1 12.3 44 305-348 20-66 (365)
265 PHA02544 44 clamp loader, smal 84.4 7.7 0.00017 43.8 11.4 40 436-475 101-142 (316)
266 PF13173 AAA_14: AAA domain 84.3 6.3 0.00014 38.2 9.3 38 436-474 62-99 (128)
267 PRK14086 dnaA chromosomal repl 84.0 6.2 0.00013 48.6 10.9 48 324-371 316-363 (617)
268 PRK14964 DNA polymerase III su 83.9 9.7 0.00021 45.9 12.3 41 308-348 18-61 (491)
269 COG1702 PhoH Phosphate starvat 83.9 2.4 5.3E-05 47.9 6.7 52 304-360 129-181 (348)
270 PF15328 GCOM2: Putative GRINL 83.9 0.75 1.6E-05 49.5 2.7 34 956-989 6-39 (223)
271 PRK10917 ATP-dependent DNA hel 83.7 4.6 0.0001 50.9 10.0 100 657-757 290-393 (681)
272 PRK00771 signal recognition pa 83.7 8.9 0.00019 45.6 11.8 34 325-360 98-131 (437)
273 PRK00440 rfc replication facto 83.7 13 0.00028 41.8 12.9 40 308-347 22-63 (319)
274 PRK06090 DNA polymerase III su 83.5 8.5 0.00018 43.8 11.1 48 303-350 3-53 (319)
275 PRK12727 flagellar biosynthesi 83.1 15 0.00033 44.5 13.3 34 326-359 354-387 (559)
276 PRK07471 DNA polymerase III su 82.6 6.7 0.00015 45.5 10.1 43 308-350 24-69 (365)
277 PRK07764 DNA polymerase III su 82.5 9.1 0.0002 49.1 12.0 25 325-349 40-64 (824)
278 PRK14952 DNA polymerase III su 82.4 10 0.00022 46.8 11.9 42 308-349 18-62 (584)
279 cd01120 RecA-like_NTPases RecA 82.4 13 0.00028 36.7 11.0 34 326-361 3-36 (165)
280 PF06733 DEAD_2: DEAD_2; Inte 82.3 0.95 2.1E-05 46.6 2.7 44 398-449 116-159 (174)
281 COG1198 PriA Primosomal protei 82.1 2.7 5.8E-05 52.7 6.9 135 659-796 227-367 (730)
282 PTZ00112 origin recognition co 82.1 12 0.00026 47.7 12.2 43 305-347 760-806 (1164)
283 PRK08691 DNA polymerase III su 82.0 8 0.00017 48.2 10.7 42 308-349 21-65 (709)
284 PRK13826 Dtr system oriT relax 81.9 11 0.00024 49.6 12.4 58 302-364 380-437 (1102)
285 PRK14957 DNA polymerase III su 81.6 8 0.00017 47.2 10.5 41 308-348 21-64 (546)
286 PRK10416 signal recognition pa 81.2 12 0.00026 42.6 11.3 32 327-360 119-150 (318)
287 PRK12422 chromosomal replicati 80.8 5.9 0.00013 47.3 8.9 39 323-363 142-180 (445)
288 PRK09111 DNA polymerase III su 80.6 11 0.00023 46.8 11.3 42 308-349 29-73 (598)
289 COG1419 FlhF Flagellar GTP-bin 80.6 12 0.00027 43.4 11.0 56 436-491 282-341 (407)
290 PRK14951 DNA polymerase III su 80.3 9.1 0.0002 47.5 10.5 42 308-349 21-65 (618)
291 COG4626 Phage terminase-like p 80.1 19 0.00041 43.5 12.5 183 299-499 57-253 (546)
292 PRK14969 DNA polymerase III su 80.1 12 0.00026 45.7 11.4 41 308-348 21-64 (527)
293 PRK00411 cdc6 cell division co 80.0 15 0.00034 42.8 12.1 28 323-350 56-83 (394)
294 TIGR00643 recG ATP-dependent D 79.8 7.6 0.00017 48.6 9.9 97 658-755 265-365 (630)
295 PF05621 TniB: Bacterial TniB 79.5 7 0.00015 43.8 8.3 40 305-344 39-83 (302)
296 cd01124 KaiC KaiC is a circadi 79.2 5 0.00011 41.3 6.9 49 325-375 2-50 (187)
297 PRK14873 primosome assembly pr 79.2 6.4 0.00014 49.3 8.8 131 659-793 170-308 (665)
298 COG0552 FtsY Signal recognitio 78.9 15 0.00033 41.6 10.7 125 326-481 143-277 (340)
299 PRK14955 DNA polymerase III su 78.7 19 0.00042 42.3 12.3 42 308-349 21-65 (397)
300 PRK08058 DNA polymerase III su 78.4 10 0.00022 43.5 9.5 43 307-349 10-55 (329)
301 TIGR03345 VI_ClpV1 type VI sec 78.2 12 0.00025 48.5 11.0 39 308-346 192-232 (852)
302 PRK06995 flhF flagellar biosyn 78.2 12 0.00026 45.0 10.3 52 436-488 335-391 (484)
303 PRK06893 DNA replication initi 77.9 15 0.00032 39.6 10.3 25 325-349 42-66 (229)
304 COG0470 HolB ATPase involved i 77.3 4 8.7E-05 46.0 5.9 26 325-350 27-52 (325)
305 PRK14950 DNA polymerase III su 77.2 14 0.0003 45.9 10.9 41 308-348 21-64 (585)
306 PRK04132 replication factor C 77.0 7.7 0.00017 49.7 8.7 43 436-478 631-674 (846)
307 PF01695 IstB_IS21: IstB-like 76.8 2.5 5.4E-05 43.9 3.7 46 321-372 46-91 (178)
308 PF00308 Bac_DnaA: Bacterial d 76.8 18 0.0004 38.8 10.5 36 325-360 37-72 (219)
309 PRK14959 DNA polymerase III su 76.7 13 0.00028 46.0 10.3 40 309-348 22-64 (624)
310 cd01122 GP4d_helicase GP4d_hel 76.5 15 0.00032 40.5 10.1 50 321-371 29-78 (271)
311 PRK07133 DNA polymerase III su 76.3 11 0.00024 47.4 9.6 65 815-881 561-631 (725)
312 PRK11054 helD DNA helicase IV; 76.2 5.1 0.00011 50.4 6.8 63 302-370 195-259 (684)
313 PRK14721 flhF flagellar biosyn 75.9 19 0.00042 42.5 11.1 54 436-490 270-328 (420)
314 cd01121 Sms Sms (bacterial rad 75.6 19 0.00041 42.0 10.8 49 324-374 84-132 (372)
315 PRK10689 transcription-repair 75.6 23 0.00051 47.3 12.9 94 659-753 631-728 (1147)
316 PRK07952 DNA replication prote 75.3 8.3 0.00018 42.2 7.4 61 306-372 79-143 (244)
317 TIGR03499 FlhF flagellar biosy 75.2 10 0.00023 42.3 8.4 36 325-360 197-232 (282)
318 PRK05563 DNA polymerase III su 75.2 20 0.00044 44.1 11.6 24 325-348 41-64 (559)
319 PF05127 Helicase_RecD: Helica 75.0 2.7 5.9E-05 43.5 3.3 50 435-505 90-139 (177)
320 PRK13709 conjugal transfer nic 74.7 20 0.00043 49.6 12.1 65 298-364 962-1028(1747)
321 COG1435 Tdk Thymidine kinase [ 74.7 17 0.00036 38.2 8.9 35 326-362 8-42 (201)
322 PRK13833 conjugal transfer pro 74.5 8.3 0.00018 43.9 7.4 52 304-358 129-180 (323)
323 PRK06731 flhF flagellar biosyn 74.2 45 0.00098 37.1 12.9 130 323-490 76-213 (270)
324 PRK14712 conjugal transfer nic 74.1 19 0.00041 49.2 11.4 64 299-364 831-896 (1623)
325 TIGR02782 TrbB_P P-type conjug 74.0 6.7 0.00015 44.3 6.5 46 313-358 123-168 (299)
326 KOG0780 Signal recognition par 73.9 8.5 0.00019 44.1 7.0 57 326-384 105-161 (483)
327 PF03354 Terminase_1: Phage Te 73.9 9.8 0.00021 45.9 8.3 56 306-361 1-63 (477)
328 TIGR00708 cobA cob(I)alamin ad 73.8 9.3 0.0002 39.5 6.9 53 433-488 95-151 (173)
329 PRK08699 DNA polymerase III su 73.8 17 0.00038 41.5 9.8 46 304-349 2-48 (325)
330 cd00984 DnaB_C DnaB helicase C 73.6 12 0.00027 40.3 8.3 39 321-360 12-50 (242)
331 COG1200 RecG RecG-like helicas 73.5 42 0.0009 41.6 13.2 105 659-772 293-401 (677)
332 PF00004 AAA: ATPase family as 73.0 5.2 0.00011 38.3 4.7 34 326-364 2-35 (132)
333 PRK05896 DNA polymerase III su 73.0 28 0.00061 43.0 11.8 42 308-349 21-65 (605)
334 PF01443 Viral_helicase1: Vira 72.7 5.5 0.00012 42.6 5.3 40 435-477 62-101 (234)
335 KOG1133 Helicase of the DEAD s 72.7 6.3 0.00014 48.2 6.0 46 302-347 14-59 (821)
336 PRK05642 DNA replication initi 72.4 14 0.00031 40.0 8.4 37 436-472 98-138 (234)
337 PRK14953 DNA polymerase III su 72.4 26 0.00057 42.3 11.3 41 308-348 21-64 (486)
338 TIGR03346 chaperone_ClpB ATP-d 71.7 13 0.00029 48.2 9.2 39 309-347 179-219 (852)
339 KOG0991 Replication factor C, 71.6 19 0.00041 38.8 8.5 26 323-348 49-74 (333)
340 PRK04195 replication factor C 71.6 14 0.00031 44.5 9.0 25 322-346 39-63 (482)
341 CHL00095 clpC Clp protease ATP 71.5 22 0.00047 46.1 11.0 26 322-347 200-225 (821)
342 TIGR00580 mfd transcription-re 71.3 15 0.00033 47.8 9.5 95 658-753 481-579 (926)
343 PRK05986 cob(I)alamin adenolsy 70.9 36 0.00078 35.8 10.5 53 433-485 113-169 (191)
344 PRK13342 recombination factor 70.1 18 0.00038 42.8 9.1 23 323-345 37-59 (413)
345 TIGR02640 gas_vesic_GvpN gas v 69.8 9.3 0.0002 42.2 6.3 49 306-359 5-53 (262)
346 PHA03333 putative ATPase subun 69.8 28 0.0006 43.3 10.6 51 309-361 175-225 (752)
347 PRK10865 protein disaggregatio 69.6 26 0.00057 45.5 11.1 37 311-347 186-224 (857)
348 PF06745 KaiC: KaiC; InterPro 69.4 10 0.00022 40.6 6.5 51 323-375 20-71 (226)
349 PRK14965 DNA polymerase III su 69.1 26 0.00057 43.3 10.6 42 308-349 21-65 (576)
350 KOG1832 HIV-1 Vpr-binding prot 68.8 4.9 0.00011 49.9 4.0 9 87-95 1327-1335(1516)
351 PRK07399 DNA polymerase III su 68.8 21 0.00044 40.7 8.9 43 308-350 9-54 (314)
352 PRK13894 conjugal transfer ATP 68.7 13 0.00028 42.4 7.2 55 304-361 133-187 (319)
353 TIGR01075 uvrD DNA helicase II 68.3 10 0.00023 48.1 7.2 66 303-374 4-72 (715)
354 PRK14723 flhF flagellar biosyn 67.7 27 0.00059 44.2 10.3 51 436-487 264-319 (767)
355 PRK14954 DNA polymerase III su 67.7 25 0.00053 43.8 9.9 41 308-348 21-64 (620)
356 PRK06835 DNA replication prote 67.2 13 0.00027 42.6 6.8 54 304-359 161-218 (329)
357 PRK08939 primosomal protein Dn 67.1 15 0.00032 41.7 7.3 52 311-364 143-196 (306)
358 PRK09165 replicative DNA helic 67.1 38 0.00082 41.1 11.2 59 313-371 208-279 (497)
359 PRK10919 ATP-dependent DNA hel 67.0 12 0.00026 47.2 7.2 65 303-373 2-69 (672)
360 PRK12726 flagellar biosynthesi 66.6 22 0.00048 41.4 8.5 45 326-372 210-258 (407)
361 TIGR02397 dnaX_nterm DNA polym 65.6 40 0.00086 38.6 10.7 42 308-349 19-63 (355)
362 PF05496 RuvB_N: Holliday junc 65.3 16 0.00035 39.3 6.7 18 323-340 51-68 (233)
363 PF05970 PIF1: PIF1-like helic 65.0 20 0.00044 41.6 8.1 61 303-365 1-63 (364)
364 PRK08760 replicative DNA helic 64.6 45 0.00097 40.3 11.1 55 319-374 226-280 (476)
365 PRK14701 reverse gyrase; Provi 64.6 33 0.00072 47.4 11.0 77 659-736 104-186 (1638)
366 COG3972 Superfamily I DNA and 64.4 11 0.00024 44.5 5.6 36 331-366 185-220 (660)
367 PRK10867 signal recognition pa 64.4 27 0.00059 41.5 9.0 34 326-360 104-137 (433)
368 PRK11773 uvrD DNA-dependent he 64.3 13 0.00028 47.3 6.9 67 302-374 8-77 (721)
369 COG3973 Superfamily I DNA and 64.3 14 0.0003 44.9 6.4 44 326-369 230-277 (747)
370 TIGR01547 phage_term_2 phage t 64.1 23 0.00049 41.5 8.5 36 326-361 5-41 (396)
371 COG2256 MGS1 ATPase related to 64.1 34 0.00073 39.8 9.2 18 323-340 49-66 (436)
372 PRK05973 replicative DNA helic 64.0 20 0.00043 39.1 7.2 53 319-373 61-113 (237)
373 PF02456 Adeno_IVa2: Adenoviru 63.8 8.9 0.00019 42.8 4.5 124 325-462 90-223 (369)
374 TIGR02760 TraI_TIGR conjugativ 63.8 45 0.00097 47.2 12.3 61 301-364 1017-1080(1960)
375 cd00561 CobA_CobO_BtuR ATP:cor 63.8 61 0.0013 33.0 10.3 50 433-482 93-146 (159)
376 COG0464 SpoVK ATPases of the A 63.4 11 0.00023 45.7 5.7 65 304-373 250-322 (494)
377 TIGR00064 ftsY signal recognit 63.2 38 0.00082 37.7 9.5 33 326-360 76-108 (272)
378 KOG1133 Helicase of the DEAD s 63.1 46 0.001 41.1 10.5 77 680-759 632-721 (821)
379 PRK12724 flagellar biosynthesi 62.9 46 0.001 39.3 10.4 56 435-490 299-361 (432)
380 TIGR01054 rgy reverse gyrase. 62.6 31 0.00067 46.3 10.0 78 658-737 102-186 (1171)
381 KOG0740 AAA+-type ATPase [Post 62.5 13 0.00027 43.8 5.7 47 322-373 186-232 (428)
382 TIGR00678 holB DNA polymerase 62.3 48 0.001 34.3 9.6 26 324-349 16-41 (188)
383 PHA00012 I assembly protein 61.9 19 0.0004 40.9 6.6 25 326-350 5-29 (361)
384 PRK06647 DNA polymerase III su 61.7 67 0.0015 39.7 12.0 25 325-349 41-65 (563)
385 PRK06904 replicative DNA helic 61.3 86 0.0019 37.8 12.7 53 319-372 218-270 (472)
386 COG0593 DnaA ATPase involved i 61.2 63 0.0014 38.0 11.1 52 436-487 176-235 (408)
387 cd03115 SRP The signal recogni 61.1 61 0.0013 32.9 10.0 32 326-359 4-35 (173)
388 TIGR02760 TraI_TIGR conjugativ 60.9 73 0.0016 45.2 13.5 59 302-364 428-486 (1960)
389 PRK06305 DNA polymerase III su 60.8 38 0.00082 40.6 9.5 42 308-349 22-66 (451)
390 PRK12377 putative replication 60.0 25 0.00055 38.6 7.2 43 323-367 102-144 (248)
391 TIGR03877 thermo_KaiC_1 KaiC d 59.8 24 0.00051 38.3 7.0 50 322-373 21-70 (237)
392 PF00437 T2SE: Type II/IV secr 59.7 14 0.0003 40.9 5.3 45 313-359 118-162 (270)
393 PRK13341 recombination factor 58.8 40 0.00087 42.8 9.6 22 323-344 53-74 (725)
394 COG2109 BtuR ATP:corrinoid ade 58.6 27 0.00059 36.5 6.6 56 433-488 120-179 (198)
395 TIGR01074 rep ATP-dependent DN 58.5 19 0.00041 45.3 6.9 65 304-374 2-69 (664)
396 PF03237 Terminase_6: Terminas 58.4 38 0.00082 38.5 8.8 36 326-361 1-36 (384)
397 TIGR03880 KaiC_arch_3 KaiC dom 58.2 28 0.00061 37.2 7.2 48 325-374 19-66 (224)
398 cd01129 PulE-GspE PulE/GspE Th 57.9 23 0.00049 39.2 6.6 41 304-347 64-105 (264)
399 CHL00176 ftsH cell division pr 57.0 40 0.00086 42.2 9.1 24 322-345 216-239 (638)
400 PRK11034 clpA ATP-dependent Cl 56.5 39 0.00084 43.2 9.0 25 322-346 207-231 (758)
401 TIGR00665 DnaB replicative DNA 56.4 95 0.0021 36.9 12.0 48 321-369 194-241 (434)
402 TIGR01425 SRP54_euk signal rec 56.3 50 0.0011 39.2 9.3 33 326-360 104-136 (429)
403 PF04931 DNA_pol_phi: DNA poly 55.8 9.7 0.00021 48.9 3.6 20 39-58 548-567 (784)
404 PRK06921 hypothetical protein; 55.7 36 0.00079 37.7 7.7 38 322-360 117-154 (266)
405 PF04364 DNA_pol3_chi: DNA pol 55.3 41 0.00088 33.4 7.2 108 663-801 15-126 (137)
406 TIGR02655 circ_KaiC circadian 55.0 55 0.0012 39.6 9.7 65 309-375 249-314 (484)
407 PRK08840 replicative DNA helic 54.5 1.2E+02 0.0026 36.5 12.3 52 319-371 214-265 (464)
408 PF07015 VirC1: VirC1 protein; 54.3 51 0.0011 35.7 8.2 41 331-373 11-53 (231)
409 PRK08506 replicative DNA helic 54.3 92 0.002 37.6 11.4 51 319-371 189-239 (472)
410 COG0467 RAD55 RecA-superfamily 54.0 33 0.00072 37.6 7.0 50 321-372 22-71 (260)
411 TIGR03881 KaiC_arch_4 KaiC dom 53.6 37 0.0008 36.3 7.2 48 322-371 20-67 (229)
412 PRK08533 flagellar accessory p 53.4 38 0.00083 36.6 7.3 38 322-361 24-61 (230)
413 PF06068 TIP49: TIP49 C-termin 53.3 27 0.00058 40.4 6.1 52 307-361 31-86 (398)
414 PRK11331 5-methylcytosine-spec 53.0 27 0.00059 41.5 6.4 35 313-347 185-219 (459)
415 TIGR00614 recQ_fam ATP-depende 52.9 79 0.0017 38.1 10.6 80 677-757 51-137 (470)
416 COG2804 PulE Type II secretory 52.5 22 0.00047 42.6 5.4 43 304-349 242-285 (500)
417 PRK06067 flagellar accessory p 51.9 41 0.0009 36.2 7.3 51 323-375 26-76 (234)
418 TIGR01073 pcrA ATP-dependent D 51.7 32 0.00069 43.9 7.3 54 302-361 3-58 (726)
419 PF12846 AAA_10: AAA-like doma 51.6 27 0.00058 38.5 6.0 43 323-367 2-44 (304)
420 PRK13900 type IV secretion sys 51.3 29 0.00063 39.8 6.2 35 312-346 150-184 (332)
421 PRK14971 DNA polymerase III su 50.7 1.7E+02 0.0037 36.6 13.1 24 325-348 42-65 (614)
422 KOG2028 ATPase related to the 50.3 57 0.0012 37.5 7.9 36 437-474 224-259 (554)
423 TIGR00767 rho transcription te 49.7 44 0.00096 39.2 7.3 26 321-346 167-192 (415)
424 PRK09183 transposase/IS protei 49.6 23 0.00051 39.0 4.9 41 321-363 101-141 (259)
425 TIGR00959 ffh signal recogniti 49.6 54 0.0012 39.0 8.2 35 325-360 102-136 (428)
426 PRK05564 DNA polymerase III su 49.3 91 0.002 35.3 9.8 25 325-349 29-53 (313)
427 PRK04328 hypothetical protein; 48.8 45 0.00097 36.5 7.0 49 323-373 24-72 (249)
428 PRK11776 ATP-dependent RNA hel 48.5 80 0.0017 37.8 9.7 92 659-755 51-155 (460)
429 PRK04537 ATP-dependent RNA hel 48.0 80 0.0017 39.1 9.7 72 677-753 84-165 (572)
430 KOG0651 26S proteasome regulat 48.0 30 0.00064 39.0 5.2 40 321-365 165-204 (388)
431 PRK06620 hypothetical protein; 47.6 1.1E+02 0.0023 32.8 9.4 36 436-473 86-122 (214)
432 PTZ00293 thymidine kinase; Pro 47.2 27 0.00058 37.3 4.7 35 326-362 8-42 (211)
433 TIGR02525 plasmid_TraJ plasmid 47.0 35 0.00076 39.7 6.0 37 322-358 149-185 (372)
434 COG1474 CDC6 Cdc6-related prot 46.7 2.7E+02 0.0059 32.4 13.2 46 304-349 21-69 (366)
435 COG0541 Ffh Signal recognition 46.4 69 0.0015 37.8 8.1 58 326-385 104-161 (451)
436 PRK11192 ATP-dependent RNA hel 45.4 1.2E+02 0.0026 35.9 10.5 87 677-768 73-172 (434)
437 KOG1807 Helicases [Replication 45.3 46 0.00099 41.6 6.7 67 303-373 378-449 (1025)
438 COG4646 DNA methylase [Transcr 45.2 9.4 0.0002 44.4 1.0 33 462-494 472-504 (637)
439 PRK08006 replicative DNA helic 45.0 2E+02 0.0044 34.7 12.3 53 319-372 221-273 (471)
440 PF13481 AAA_25: AAA domain; P 44.8 52 0.0011 33.9 6.5 54 322-375 32-93 (193)
441 PRK04837 ATP-dependent RNA hel 44.7 1.2E+02 0.0026 35.8 10.3 73 677-754 83-164 (423)
442 KOG1189 Global transcriptional 44.4 18 0.00038 44.7 3.1 10 121-130 866-875 (960)
443 TIGR03878 thermo_KaiC_2 KaiC d 44.1 53 0.0012 36.2 6.7 34 325-360 39-72 (259)
444 TIGR02785 addA_Gpos recombinat 43.9 50 0.0011 44.8 7.5 60 304-369 2-62 (1232)
445 KOG0943 Predicted ubiquitin-pr 43.8 35 0.00076 44.0 5.4 11 42-52 1611-1621(3015)
446 smart00763 AAA_PrkA PrkA AAA d 43.4 52 0.0011 38.1 6.5 45 304-348 56-104 (361)
447 TIGR00347 bioD dethiobiotin sy 43.4 30 0.00065 35.0 4.3 34 326-361 2-35 (166)
448 KOG0737 AAA+-type ATPase [Post 43.2 25 0.00053 40.4 3.8 51 318-373 123-173 (386)
449 PRK10590 ATP-dependent RNA hel 42.6 1.3E+02 0.0029 35.9 10.3 71 678-753 76-155 (456)
450 PLN00020 ribulose bisphosphate 42.5 16 0.00036 42.2 2.3 71 293-370 120-191 (413)
451 cd01125 repA Hexameric Replica 42.3 33 0.00073 37.1 4.7 37 324-360 3-49 (239)
452 KOG2340 Uncharacterized conser 42.3 97 0.0021 37.3 8.4 95 678-773 553-648 (698)
453 PRK06321 replicative DNA helic 42.2 1.4E+02 0.003 36.0 10.3 57 314-371 218-274 (472)
454 COG1224 TIP49 DNA helicase TIP 42.2 31 0.00066 39.5 4.3 26 321-346 64-89 (450)
455 PRK07004 replicative DNA helic 42.2 1.5E+02 0.0032 35.8 10.4 51 320-371 211-261 (460)
456 cd03028 GRX_PICOT_like Glutare 41.3 81 0.0018 28.6 6.4 59 676-735 6-70 (90)
457 PF02606 LpxK: Tetraacyldisacc 41.1 1E+02 0.0023 35.2 8.6 124 332-477 47-192 (326)
458 PF13607 Succ_CoA_lig: Succiny 41.0 1.6E+02 0.0034 29.3 8.8 86 679-785 3-90 (138)
459 COG2812 DnaX DNA polymerase II 40.9 74 0.0016 38.6 7.6 42 308-349 21-65 (515)
460 PRK05636 replicative DNA helic 40.8 1.7E+02 0.0038 35.6 10.8 48 322-370 265-312 (505)
461 PRK13235 nifH nitrogenase redu 40.6 26 0.00056 38.8 3.6 27 330-358 9-35 (274)
462 TIGR02533 type_II_gspE general 40.6 35 0.00075 41.3 4.9 41 303-346 225-266 (486)
463 PRK13851 type IV secretion sys 40.4 36 0.00078 39.2 4.8 46 313-361 153-198 (344)
464 TIGR01281 DPOR_bchL light-inde 40.3 26 0.00057 38.5 3.6 27 330-358 8-34 (268)
465 PRK07276 DNA polymerase III su 40.3 1.4E+02 0.003 33.7 9.1 46 304-350 3-50 (290)
466 KOG1806 DEAD box containing he 40.1 42 0.00091 43.1 5.4 67 303-373 738-805 (1320)
467 COG0513 SrmB Superfamily II DN 39.5 1.4E+02 0.0031 36.4 10.0 90 658-753 75-180 (513)
468 cd01130 VirB11-like_ATPase Typ 39.4 54 0.0012 34.0 5.6 38 304-344 10-47 (186)
469 PRK13531 regulatory ATPase Rav 39.3 40 0.00087 40.5 5.0 39 308-346 25-63 (498)
470 KOG0744 AAA+-type ATPase [Post 39.2 44 0.00095 37.8 4.9 74 299-372 149-231 (423)
471 PRK06646 DNA polymerase III su 39.1 45 0.00097 33.9 4.6 41 659-699 11-51 (154)
472 TIGR03817 DECH_helic helicase/ 39.0 1.2E+02 0.0026 38.9 9.5 61 659-719 61-126 (742)
473 TIGR00365 monothiol glutaredox 38.8 89 0.0019 28.9 6.3 59 676-735 10-74 (97)
474 PRK10037 cell division protein 38.8 29 0.00063 37.8 3.6 30 327-358 7-36 (250)
475 PF04665 Pox_A32: Poxvirus A32 38.5 47 0.001 36.3 5.0 39 321-361 12-50 (241)
476 KOG1942 DNA helicase, TBP-inte 38.4 46 0.001 37.0 4.8 26 321-346 63-88 (456)
477 PRK13230 nitrogenase reductase 38.3 30 0.00066 38.4 3.7 28 329-358 8-35 (279)
478 cd01983 Fer4_NifH The Fer4_Nif 38.1 56 0.0012 28.8 4.8 31 327-359 4-34 (99)
479 PF07726 AAA_3: ATPase family 38.0 25 0.00054 34.6 2.5 22 325-346 2-23 (131)
480 COG1222 RPT1 ATP-dependent 26S 38.0 40 0.00086 38.7 4.4 39 306-344 157-207 (406)
481 COG1444 Predicted P-loop ATPas 37.9 2.1E+02 0.0045 36.5 10.9 61 303-363 211-272 (758)
482 PRK10436 hypothetical protein; 37.8 47 0.001 39.9 5.3 41 303-346 201-242 (462)
483 PRK09401 reverse gyrase; Revie 37.7 1.6E+02 0.0035 39.7 10.7 95 658-753 104-207 (1176)
484 KOG0652 26S proteasome regulat 37.7 43 0.00093 36.6 4.4 25 320-344 203-227 (424)
485 PF00265 TK: Thymidine kinase; 37.5 47 0.001 34.4 4.7 34 326-361 5-38 (176)
486 PF13500 AAA_26: AAA domain; P 37.4 47 0.001 34.7 4.7 33 326-360 5-37 (199)
487 cd02037 MRP-like MRP (Multiple 37.3 41 0.0009 34.1 4.2 51 435-489 67-117 (169)
488 PRK05728 DNA polymerase III su 37.0 51 0.0011 32.9 4.6 111 659-801 11-125 (142)
489 PRK03992 proteasome-activating 36.8 44 0.00096 39.2 4.9 41 322-367 165-205 (389)
490 TIGR00764 lon_rel lon-related 36.6 76 0.0017 39.6 7.1 54 293-347 9-62 (608)
491 TIGR01389 recQ ATP-dependent D 36.6 7.2E+02 0.016 30.8 15.8 60 677-737 53-112 (591)
492 PRK13766 Hef nuclease; Provisi 36.4 4E+02 0.0086 34.3 13.8 116 657-778 37-163 (773)
493 cd01520 RHOD_YbbB Member of th 36.3 51 0.0011 31.9 4.5 39 674-712 83-122 (128)
494 cd03418 GRX_GRXb_1_3_like Glut 36.3 1.4E+02 0.003 25.4 6.8 57 679-735 1-58 (75)
495 PRK11823 DNA repair protein Ra 36.3 1.9E+02 0.0042 34.6 10.2 50 324-375 82-131 (446)
496 PRK08903 DnaA regulatory inact 36.0 89 0.0019 33.3 6.8 37 322-360 42-78 (227)
497 PTZ00454 26S protease regulato 35.9 42 0.0009 39.5 4.4 42 321-367 178-219 (398)
498 PRK13185 chlL protochlorophyll 35.7 35 0.00075 37.6 3.6 28 329-358 9-36 (270)
499 PRK07773 replicative DNA helic 35.7 87 0.0019 41.0 7.7 125 306-442 201-334 (886)
500 cd02117 NifH_like This family 35.7 36 0.00078 36.1 3.6 25 332-358 10-34 (212)
No 1
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=7.5e-125 Score=1078.94 Aligned_cols=688 Identities=40% Similarity=0.626 Sum_probs=605.9
Q ss_pred ccCCCccccCCCCccccCccccCCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhc-CCCCeEEEE
Q 001731 280 EDEGSITLSGPRSTYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHS-RLIKRALVV 358 (1019)
Q Consensus 280 ~~~~~~~~~~~~~~~~lp~~i~~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~-~~~~~~LIV 358 (1019)
.+...+........|.+|+.|+..|+|||++||+|||++|+++.||||||+||||||+|+|+|+++++++ ...+|+|||
T Consensus 182 ~~~~~~~~~~~~~~~~vPg~I~~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIV 261 (923)
T KOG0387|consen 182 EDHSEISGKKLEGGFKVPGFIWSKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIV 261 (923)
T ss_pred ccccccccccccccccccHHHHHHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEE
Confidence 3444555555666799999999999999999999999999999999999999999999999999999998 677899999
Q ss_pred eCcccHHHHHHHHHHhcCCCcEEEEcccccchhhHH-----------HHHhhhCCCEEEecHHHHHhccccccCCCcccC
Q 001731 359 APKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYE-----------LQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISD 427 (1019)
Q Consensus 359 vP~sLl~qW~~E~~k~~~~~~v~~~~g~~~~~~~~~-----------~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~ 427 (1019)
||++++.||++||.+|+|..++.++++++...+... ........+|+||||+.++.....+
T Consensus 262 CP~Tii~qW~~E~~~w~p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~d~l-------- 333 (923)
T KOG0387|consen 262 CPATIIHQWMKEFQTWWPPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQGDDL-------- 333 (923)
T ss_pred ccHHHHHHHHHHHHHhCcceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccCccc--------
Confidence 999999999999999999999999999876422110 1112335679999999998765543
Q ss_pred cCCCCCCCccEEEEcCCcccCCcchHHhHHhhcCCcccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhccc
Q 001731 428 EAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPI 507 (1019)
Q Consensus 428 ~~~~~~~~wd~VIlDEAH~iKN~~s~~~kal~~l~~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi 507 (1019)
....|+|+|+||+|+|||++|+++.+|+.+++.+||+||||||||++.|||+||+|+.|+.||+...|.+.|..||
T Consensus 334 ----~~~~W~y~ILDEGH~IrNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI 409 (923)
T KOG0387|consen 334 ----LGILWDYVILDEGHRIRNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPI 409 (923)
T ss_pred ----ccccccEEEecCcccccCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhhe
Confidence 3677999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcchhhHHHHhhHHHHHHHHHHhHHHHHHhhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhHHH
Q 001731 508 LRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIV 587 (1019)
Q Consensus 508 ~~~~~~~a~~~e~~~~~~~~~~L~~~i~p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~ 587 (1019)
..|.+.+|++.+.+++++|+..|+.+|+||+|||+|.+|.. ..||.|.++|+||.||++|+++|..|+++..+
T Consensus 410 ~~GgyaNAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~-------~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v 482 (923)
T KOG0387|consen 410 NRGGYANASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKG-------LKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEV 482 (923)
T ss_pred eccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh-------ccCCCccceEEEEeccHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999999999999999999953 37999999999999999999999999999999
Q ss_pred hhhcCCCh--HHHHHHHHHHhcChhhhhhhhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHH
Q 001731 588 LSAFDGSP--LAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISF 665 (1019)
Q Consensus 588 ~~~~~~~~--l~~l~~Lrkic~hP~ll~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~ 665 (1019)
...+++.. +..+..||++||||.++..... ....+ .++ +..++.|+|+.+
T Consensus 483 ~~i~ng~~~~l~Gi~iLrkICnHPdll~~~~~-~~~~~--------------------------~D~-~g~~k~sGKm~v 534 (923)
T KOG0387|consen 483 NKILNGKRNCLSGIDILRKICNHPDLLDRRDE-DEKQG--------------------------PDY-EGDPKRSGKMKV 534 (923)
T ss_pred HHHHcCCccceechHHHHhhcCCcccccCccc-ccccC--------------------------CCc-CCChhhcchHHH
Confidence 88888775 8999999999999999876421 00000 000 134557999999
Q ss_pred HHHHHHhhccCCCceeEecccHHHHHHHHHHHh-hcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccC
Q 001731 666 ILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIG-SKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLT 744 (1019)
Q Consensus 666 L~~LL~~~~~~g~KvLIFsq~~~~ldiL~~~L~-~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLN 744 (1019)
+..+|..|+..|+|||+|+|++.||++|+.+|. ..||.|+|+||.++.+.|+.+|++||.++..+|||+||+|||.|||
T Consensus 535 l~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlN 614 (923)
T KOG0387|consen 535 LAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLN 614 (923)
T ss_pred HHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccc
Confidence 999999999999999999999999999999999 6899999999999999999999999999999999999999999999
Q ss_pred cccCCEEEEcCCCCCchhhhhhhhhhhhhCCCCcEEEEEEeeCCCHHHHHHHHHHHHHhHHHHHhccccccccCCHHHHH
Q 001731 745 LTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLR 824 (1019)
Q Consensus 745 Lt~A~~VIi~D~~WNp~~~~QaiGRa~RiGQ~k~V~VyrLit~gTiEEkI~~rq~~K~~l~~~~~~~~~~~~~fs~~dL~ 824 (1019)
||+||+||+|||.|||+++.||..||||+||+++|.||||++.|||||+||.+|++|+.|.+.++.++++.|||...+|+
T Consensus 615 LTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI~Kq~Ltn~il~~p~q~RfF~~~dl~ 694 (923)
T KOG0387|consen 615 LTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQIFKQFLTNRILKNPEQRRFFKGNDLH 694 (923)
T ss_pred cccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHHHHHHHHHHHHhcCHHHhhhcccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCCCchhhHHHHhhhhcCCCCCChhHHHHHHHHhhcCcccccccccccchhhhhhccchH-HHHHhhcccccc
Q 001731 825 ELLSLPKQGFDVSLTQQQLHEEHGDQHNMDESLEAHIQFLDTLGIAGVSHHSLLFSKTARVQVVQEE-EEATRRKGTAFV 903 (1019)
Q Consensus 825 eLf~~~~~~~~~s~tq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~h~~l~~~~~~~~~~~~~-~~~~~~~~~~~~ 903 (1019)
+||++...|.+...|+....+.|.. .........+++|.+...+.++++|..+|+........++. +...+..+..++
T Consensus 695 dLFsl~~~G~~~~~te~~~~~~~~~-~~~~lk~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~il 773 (923)
T KOG0387|consen 695 DLFSLKDFGDDGESTETSSKEVHRN-EKVNLKRNSSIDFEEKEDLLALSKHSELSSSVSNGSSEEEVEEAKDREMIKPIL 773 (923)
T ss_pred HHhCCCCCCcCcchhhhhhhhhhhh-HHHHHhhcccccchhhhhhhhhccccccccccCchHHHHHHHHHhhhhhhhhhh
Confidence 9999999999999998877776654 23344455678888888999999999998887777666663 233444556778
Q ss_pred cCCccchhhccccCCcccccCccccccccc-cCCchhhhhhhhhHHHHHHhHHHHHhcccceecccCCCchhHHHHHHHH
Q 001731 904 GNSSSSYLVARNVDGAEYAFNPRDIKLNKK-SSSPKNEAKLKESDIKERIKRLSQLISNKVTVERLPDKGTKLQKQIAEL 982 (1019)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 982 (1019)
|.-+.++.+.+...+..+++.++.....++ ..++.++..+.......+.++++..+.+.++|+|.|+.+.++..+++++
T Consensus 774 g~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~n~~~s~dr~~~~~~~~s~~~~~t~~~g~~g~~~r~~~~k~~~~~~~~~~ 853 (923)
T KOG0387|consen 774 GSLSDSVVNNHRNEEEKNIIETEASTSVKRANDALSDDRKLSKRKGCSGEETWTDSSGEAGKVERPSDYKMKIESTANEL 853 (923)
T ss_pred ccchhhhHHhhhhhhhhccccccccchhhhhccccccchhhhhhcccccCcchhhccccCCCcccCchhcchhHHHHHHH
Confidence 777666788888888999999888877766 6677788888888888999999999999999999999999999999999
Q ss_pred HHHHHHhhhccCC-CCcccccc-chhHHhhhhccc
Q 001731 983 NSELNKIKMEKRP-EPGVIDLD-DVTGKLQRGLFL 1015 (1019)
Q Consensus 983 ~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~ 1015 (1019)
+..+..+++.... ..+++|.- ++.++.+..+|.
T Consensus 854 ~~~t~~~ksa~~~~~~e~~d~~~~~~r~k~~~~n~ 888 (923)
T KOG0387|consen 854 LNITKDVKSASKNGRQELLDSGLKFSRAKQKNLNL 888 (923)
T ss_pred HHHhhccccccccccHHHHHhhHhhhhhhhhchhh
Confidence 9999777644433 45666554 778888877775
No 2
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=4.4e-93 Score=812.12 Aligned_cols=475 Identities=35% Similarity=0.563 Sum_probs=413.1
Q ss_pred cCcccc-CCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhh-cCCCCeEEEEeCcccHHHHHHHHHH
Q 001731 296 LPGKIG-NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFH-SRLIKRALVVAPKTLLSHWIKELTA 373 (1019)
Q Consensus 296 lp~~i~-~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~-~~~~~~~LIVvP~sLl~qW~~E~~k 373 (1019)
-|..+. ..|+|||.+|++||+.+|..+-+|||||+||||||+|+|+++.++.. .+..+|+||+||.|++.||.+||.+
T Consensus 159 sP~~v~~g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~NW~~Ef~r 238 (971)
T KOG0385|consen 159 SPSYVKGGELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDNWMNEFKR 238 (971)
T ss_pred CchhhcCCccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHHHHHHHHH
Confidence 366666 68999999999999999999999999999999999999999999987 5557899999999999999999999
Q ss_pred hcCCCcEEEEcccccchhhHHHHHhh-hCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcch
Q 001731 374 VGLSAKIREYFGTCVKTRQYELQYVL-QDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPST 452 (1019)
Q Consensus 374 ~~~~~~v~~~~g~~~~~~~~~~~~~~-~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s 452 (1019)
|+|+..+.+|+|....+......... ..++|+||||+++.+....+. ...|.|+||||||+|||.+|
T Consensus 239 f~P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~~lk------------~~~W~ylvIDEaHRiKN~~s 306 (971)
T KOG0385|consen 239 FTPSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKSFLK------------KFNWRYLVIDEAHRIKNEKS 306 (971)
T ss_pred hCCCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHHHHh------------cCCceEEEechhhhhcchhh
Confidence 99999999999987655443322222 368999999999988765543 67799999999999999999
Q ss_pred HHhHHhhcCCcccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHHH
Q 001731 453 QRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRE 532 (1019)
Q Consensus 453 ~~~kal~~l~~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~~L~~ 532 (1019)
..++.++.+.+.+|++|||||+|||+.|||+|++|+.|++|++...|..||......+. ...+.+|+.
T Consensus 307 ~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~------------~e~v~~Lh~ 374 (971)
T KOG0385|consen 307 KLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGD------------QELVSRLHK 374 (971)
T ss_pred HHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccC------------HHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999976532222 235778999
Q ss_pred HhHHHHHHhhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhHHHhhh--c---CCChHHHHHHHHHHhc
Q 001731 533 RIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSA--F---DGSPLAALTILKKICD 607 (1019)
Q Consensus 533 ~i~p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~--~---~~~~l~~l~~Lrkic~ 607 (1019)
.++||++||+|.+|. ..||++.+.++++.|+..|++.|..++........ . .....+.+++||||||
T Consensus 375 vL~pFlLRR~K~dVe--------~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccn 446 (971)
T KOG0385|consen 375 VLRPFLLRRIKSDVE--------KSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCN 446 (971)
T ss_pred hhhHHHHHHHHHhHh--------hcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcC
Confidence 999999999999994 45999999999999999999999999987543222 1 1346778899999999
Q ss_pred ChhhhhhhhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhccCCCceeEecccH
Q 001731 608 HPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTR 687 (1019)
Q Consensus 608 hP~ll~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~ 687 (1019)
||+|+...... .. +...+-....|+|+.+|.+||..+.+.|||||||||++
T Consensus 447 HPYLF~g~ePg------~p-----------------------yttdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt 497 (971)
T KOG0385|consen 447 HPYLFDGAEPG------PP-----------------------YTTDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMT 497 (971)
T ss_pred CccccCCCCCC------CC-----------------------CCcchHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHH
Confidence 99998742110 00 00011122369999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCC-CccEEEEecCCcccccCcccCCEEEEcCCCCCchhhhhh
Q 001731 688 KMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGD-VAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQS 766 (1019)
Q Consensus 688 ~~ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~-~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~Qa 766 (1019)
.|||+|+.++..++|.|+||||+++.++|...|+.||..+ ..+|||+||+|||+||||++|++||+||.+|||..+.||
T Consensus 498 ~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQA 577 (971)
T KOG0385|consen 498 RMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQA 577 (971)
T ss_pred HHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHH
Confidence 9999999999999999999999999999999999999866 588999999999999999999999999999999999999
Q ss_pred hhhhhhhCCCCcEEEEEEeeCCCHHHHHHHHHHHHHhHHHHHhccccc----cccCCHHHHHHHHcCCC
Q 001731 767 VDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQ----IRYFSQQDLRELLSLPK 831 (1019)
Q Consensus 767 iGRa~RiGQ~k~V~VyrLit~gTiEEkI~~rq~~K~~l~~~~~~~~~~----~~~fs~~dL~eLf~~~~ 831 (1019)
++|||||||+++|+||||+|.+||||+|++|...|..|-+.++.+... .....++++..++.++.
T Consensus 578 mDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL~Ld~~VIq~g~l~~~~~~~~~k~~~l~~~r~g~ 646 (971)
T KOG0385|consen 578 MDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKLRLDKLVIQQGRLEEQKSNGLGKDELLNLLRFGA 646 (971)
T ss_pred HHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHhchhhhhhccCchhhhhccccchHHHHHHHHcCc
Confidence 999999999999999999999999999999999999999999876622 22355788888877653
No 3
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=2e-89 Score=798.22 Aligned_cols=520 Identities=32% Similarity=0.543 Sum_probs=431.2
Q ss_pred ccCCCCccccCccccCCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhc-CCCCeEEEEeCcccHH
Q 001731 287 LSGPRSTYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHS-RLIKRALVVAPKTLLS 365 (1019)
Q Consensus 287 ~~~~~~~~~lp~~i~~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~-~~~~~~LIVvP~sLl~ 365 (1019)
+......+.+|.-+...|+.||+.|+.||..+|..+-+|||||+||||||+|+|++++++.+. +.++|.|||||++++-
T Consensus 599 l~tTqVktpvPsLLrGqLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviL 678 (1958)
T KOG0391|consen 599 LVTTQVKTPVPSLLRGQLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVIL 678 (1958)
T ss_pred eeeeeeccCchHHHHHHHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhh
Confidence 333445778999999999999999999999999999999999999999999999999999875 5567999999999999
Q ss_pred HHHHHHHHhcCCCcEEEEcccccchhhHHHHHh-hhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCC
Q 001731 366 HWIKELTAVGLSAKIREYFGTCVKTRQYELQYV-LQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEG 444 (1019)
Q Consensus 366 qW~~E~~k~~~~~~v~~~~g~~~~~~~~~~~~~-~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEA 444 (1019)
+|.-||++|||+.++..|+|+...++.....+. -+.++|+||+|..+..+...++ ...|.|+|||||
T Consensus 679 nWEMElKRwcPglKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~AFk------------rkrWqyLvLDEa 746 (1958)
T KOG0391|consen 679 NWEMELKRWCPGLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTAFK------------RKRWQYLVLDEA 746 (1958)
T ss_pred hhhHHHhhhCCcceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHHHH------------hhccceeehhhh
Confidence 999999999999999999998765544332221 1247999999999988776554 667999999999
Q ss_pred cccCCcchHHhHHhhcCCcccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhH
Q 001731 445 HLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGS 524 (1019)
Q Consensus 445 H~iKN~~s~~~kal~~l~~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~ 524 (1019)
|+|||..+++|+++..+.+.+|++|||||+||++.|||+|++||.|..|.+...|+.||.+|+..-... ...++.
T Consensus 747 qnIKnfksqrWQAllnfnsqrRLLLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~wfsnPltgmiEg-----sqeyn~ 821 (1958)
T KOG0391|consen 747 QNIKNFKSQRWQALLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKPWFSNPLTGMIEG-----SQEYNH 821 (1958)
T ss_pred hhhcchhHHHHHHHhccchhheeeecCCchhhHHHHHHHHHHHhhchhhhhhhhHHHHhcCcchhhccc-----chhhch
Confidence 999999999999999999999999999999999999999999999999999999999999997543332 233456
Q ss_pred HHHHHHHHHhHHHHHHhhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhH----HHhhhcCCChHHHHH
Q 001731 525 AVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSE----IVLSAFDGSPLAALT 600 (1019)
Q Consensus 525 ~~~~~L~~~i~p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~----~~~~~~~~~~l~~l~ 600 (1019)
..+.+||+.++||+|||+|.+| ...||+|++++|+|+|+..||.+|+.|+... .+.+..-.+++++++
T Consensus 822 klV~RLHkVlrPfiLRRlK~dV--------EKQlpkKyEHvv~CrLSkRQR~LYDDfmsq~~TKetLkSGhfmsVlnilm 893 (1958)
T KOG0391|consen 822 KLVIRLHKVLRPFILRRLKRDV--------EKQLPKKYEHVVKCRLSKRQRALYDDFMSQPGTKETLKSGHFMSVLNILM 893 (1958)
T ss_pred HHHHHHHHHhHHHHHHHHHHHH--------HHhcchhhhhheeeehhhhHHHHHHHHhhccchhhHhhcCchhHHHHHHH
Confidence 7788999999999999999999 5569999999999999999999999998653 334444456899999
Q ss_pred HHHHHhcChhhhhhhhhh-------------------------------------------hh------------hhhcc
Q 001731 601 ILKKICDHPLLLTKRAAE-------------------------------------------DV------------LDGMD 625 (1019)
Q Consensus 601 ~Lrkic~hP~ll~~~~~~-------------------------------------------~~------------~~~~~ 625 (1019)
+||++||||.|+..+... .+ ...+.
T Consensus 894 qLrKvCNHPnLfEpRpv~ssfV~e~l~~s~as~~~r~l~el~~k~p~~~~ls~~p~~~~vp~v~pas~~~sAspl~s~l~ 973 (1958)
T KOG0391|consen 894 QLRKVCNHPNLFEPRPVGSSFVAEPLEYSSASKITRHLAELLSKKPIPRKLSEEPSTSAVPAVRPASAKLSASPLASALP 973 (1958)
T ss_pred HHHHHcCCCCcCCCCCCCcccccCceeccccccchhhhhhhccCCCCchhhhcCCCcccccccchhhhhhcccccccccc
Confidence 999999999886422100 00 00000
Q ss_pred CC---------------C-----------------------------------------------C--------------
Q 001731 626 SM---------------L-----------------------------------------------N-------------- 629 (1019)
Q Consensus 626 ~~---------------~-----------------------------------------------~-------------- 629 (1019)
.+ + +
T Consensus 974 ~ls~~~rPp~pt~~g~~F~~~aa~atsphteea~~~~v~r~~~~~~va~~q~r~lt~p~~~veq~n~~k~~~htt~~~p~ 1053 (1958)
T KOG0391|consen 974 QLSLRGRPPIPTFAGAPFQTSAASATSPHTEEASASSVARLPSGEVVAIAQLRSLTGPQSRVEQPNTPKTLQHTTAGQPL 1053 (1958)
T ss_pred cccCCCCCCCccccccccccchhcccCCccccccccchhcccchheeeccccccccCcHhHhhcCCCceeeeeecccCcc
Confidence 00 0 0
Q ss_pred ----------------------h----------------------------------------------------h-HHH
Q 001731 630 ----------------------P----------------------------------------------------E-DAA 634 (1019)
Q Consensus 630 ----------------------~----------------------------------------------------e-~~~ 634 (1019)
+ + ...
T Consensus 1054 ~~~~svl~~~sv~t~pl~~ap~p~~~~l~~a~gsr~pv~~ddpa~ltp~sg~pkl~gtat~~~g~~pr~~~~klee~Rkr 1133 (1958)
T KOG0391|consen 1054 QLQGSVLQIVSVPTQPLLRAPGPVVMALHGALGSRPPVGGDDPAPLTPQSGVPKLVGTATLAVGEPPRAIGGKLEEERKR 1133 (1958)
T ss_pred ccccceeeeccccccccccCCCCcceecchhhccCCCCCCCCccccccccCCCCCcchhhhccCCCccccccchhhHHHH
Confidence 0 0 000
Q ss_pred H-HHHHHHH--------------------------------------------Hhhhhhhhhh-----------------
Q 001731 635 L-AEKLAMH--------------------------------------------IADVAEKDDF----------------- 652 (1019)
Q Consensus 635 ~-~~~l~~~--------------------------------------------~~~~~~~~~~----------------- 652 (1019)
. .+.+... +.++.+...+
T Consensus 1134 ql~erl~ri~~~~APvyg~e~l~~c~lp~e~i~p~~~ea~~e~~l~~~r~le~l~~iIdrfafv~ppvva~ppslra~~p 1213 (1958)
T KOG0391|consen 1134 QLKERLDRIYLVNAPVYGRELLRICALPSEGIVPWRSEAPSELMLTLCRCLESLQDIIDRFAFVIPPVVAAPPSLRAPRP 1213 (1958)
T ss_pred HHHHHHHHHhhccCcccchhhhhhhccchhhhccccccCchhhhhhHHHHHHHHHHHHHHheeecccccCCChhhcCCCC
Confidence 0 0000000 0000000000
Q ss_pred -----------------------h---------------hhccchhhhHHHHHHHHHhhccCCCceeEecccHHHHHHHH
Q 001731 653 -----------------------Q---------------EQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQ 694 (1019)
Q Consensus 653 -----------------------~---------------~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~ 694 (1019)
. ....-.++|++.|.-||+.++..|||||||+|++.|||+|+
T Consensus 1214 pp~~~~r~r~~~~qlrsel~p~~~~~q~~~~r~lqFPelrLiqyDcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLe 1293 (1958)
T KOG0391|consen 1214 PPLYSHRMRILRQQLRSELAPYFQQRQTTAPRLLQFPELRLIQYDCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLE 1293 (1958)
T ss_pred CcccchHHHHHHHHHHHHhccccchhhccchhhhcCcchheeecccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHH
Confidence 0 00001278999999999999999999999999999999999
Q ss_pred HHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCCCCCchhhhhhhhhhhhhC
Q 001731 695 ESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIG 774 (1019)
Q Consensus 695 ~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QaiGRa~RiG 774 (1019)
.+|+.+||-|+|+||+++.++|+.++++||.+..++|||+||+.||+||||++|++|||||.+|||..+.||.+|+||||
T Consensus 1294 qFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIG 1373 (1958)
T KOG0391|consen 1294 QFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIG 1373 (1958)
T ss_pred HHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEEeeCCCHHHHHHHHHHHHHhHHHHHhcccc-ccccCCHHHHHHHHcCCC
Q 001731 775 QKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKE-QIRYFSQQDLRELLSLPK 831 (1019)
Q Consensus 775 Q~k~V~VyrLit~gTiEEkI~~rq~~K~~l~~~~~~~~~-~~~~fs~~dL~eLf~~~~ 831 (1019)
|+++|+|||||...||||+|+++...|+.|-+.++.+.+ ...||++.++++||.++.
T Consensus 1374 qtRDVHIYRLISe~TIEeniLkkanqKr~L~evaiqggdfTt~ff~q~ti~dLFd~~~ 1431 (1958)
T KOG0391|consen 1374 QTRDVHIYRLISERTIEENILKKANQKRMLDEVAIQGGDFTTAFFKQRTIRDLFDVYL 1431 (1958)
T ss_pred CccceEEEEeeccchHHHHHHhhhhHHHHHHHHhhccCCccHHHHhhhhHHHHhcCCC
Confidence 999999999999999999999999999999888887665 467899999999998754
No 4
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=3.1e-87 Score=791.03 Aligned_cols=496 Identities=37% Similarity=0.602 Sum_probs=434.8
Q ss_pred CccccCccccCCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcC-------CCCeEEEEeCcccH
Q 001731 292 STYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSR-------LIKRALVVAPKTLL 364 (1019)
Q Consensus 292 ~~~~lp~~i~~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~-------~~~~~LIVvP~sLl 364 (1019)
..|.||..|...||.||.+||+||..+...+-.|||||+||||||+|+|++++.-...+ ...|.|||||.+|.
T Consensus 964 ~~y~Ip~pI~a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPsTLt 1043 (1549)
T KOG0392|consen 964 PEYKIPVPISAKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPSTLT 1043 (1549)
T ss_pred CccccccchhHHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCchhh
Confidence 35899999999999999999999999988889999999999999999999998766554 34589999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCC
Q 001731 365 SHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEG 444 (1019)
Q Consensus 365 ~qW~~E~~k~~~~~~v~~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEA 444 (1019)
.+|+.|+.+|+|-.++..|.|....+. .++...++.+|+||+|+.++++...+. .+.|.|+|+||+
T Consensus 1044 GHW~~E~~kf~pfL~v~~yvg~p~~r~--~lR~q~~~~~iiVtSYDv~RnD~d~l~------------~~~wNYcVLDEG 1109 (1549)
T KOG0392|consen 1044 GHWKSEVKKFFPFLKVLQYVGPPAERR--ELRDQYKNANIIVTSYDVVRNDVDYLI------------KIDWNYCVLDEG 1109 (1549)
T ss_pred hHHHHHHHHhcchhhhhhhcCChHHHH--HHHhhccccceEEeeHHHHHHHHHHHH------------hcccceEEecCc
Confidence 999999999999999999988765443 344455678999999999999988765 567999999999
Q ss_pred cccCCcchHHhHHhhcCCcccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhH
Q 001731 445 HLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGS 524 (1019)
Q Consensus 445 H~iKN~~s~~~kal~~l~~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~ 524 (1019)
|-|||..++.+++++.+++.||++|||||||||+.|||+||+|+.|+++|+.+.|+.+|.+||...++...+..+...|.
T Consensus 1110 HVikN~ktkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~ 1189 (1549)
T KOG0392|consen 1110 HVIKNSKTKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGV 1189 (1549)
T ss_pred ceecchHHHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHhhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhHHH----------hhh--cC
Q 001731 525 AVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIV----------LSA--FD 592 (1019)
Q Consensus 525 ~~~~~L~~~i~p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~----------~~~--~~ 592 (1019)
.++..||+.+-||++||+|.+|+. .||+|.....+|.|++.|+++|+.|..+... .+. ..
T Consensus 1190 lAleaLHKqVLPF~LRRlKedVL~--------DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~ 1261 (1549)
T KOG0392|consen 1190 LALEALHKQVLPFLLRRLKEDVLK--------DLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDK 1261 (1549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--------hCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcch
Confidence 999999999999999999999966 5999999999999999999999999876211 000 12
Q ss_pred CChHHHHHHHHHHhcChhhhhhhhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHh
Q 001731 593 GSPLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDK 672 (1019)
Q Consensus 593 ~~~l~~l~~Lrkic~hP~ll~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~ 672 (1019)
..+++++..||++|+||.++.... .|.-......+....... -....|||+.+|.++|.+
T Consensus 1262 ~HvFqaLqYlrKLcnHpaLvlt~~------------hp~la~i~~~l~~~~~~L--------Hdi~hspKl~AL~qLL~e 1321 (1549)
T KOG0392|consen 1262 THVFQALQYLRKLCNHPALVLTPV------------HPDLAAIVSHLAHFNSSL--------HDIQHSPKLSALKQLLSE 1321 (1549)
T ss_pred HHHHHHHHHHHHhcCCcceeeCCC------------cchHHHHHHHHHHhhhhH--------HHhhhchhHHHHHHHHHH
Confidence 347899999999999999876421 111112222211111110 012469999999999998
Q ss_pred hcc--------------CCCceeEecccHHHHHHHHHHHhhc---CCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEe
Q 001731 673 LIP--------------EGHNVLIFSQTRKMLNLIQESIGSK---GYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLT 735 (1019)
Q Consensus 673 ~~~--------------~g~KvLIFsq~~~~ldiL~~~L~~~---gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlS 735 (1019)
+-- .+||+|||||++.|++++++-|-+. .+.|.|+||++++.+|++++.+||+++.+.|+|+|
T Consensus 1322 CGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLT 1401 (1549)
T KOG0392|consen 1322 CGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLT 1401 (1549)
T ss_pred hCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEe
Confidence 731 4799999999999999999887654 56799999999999999999999999999999999
Q ss_pred cCCcccccCcccCCEEEEcCCCCCchhhhhhhhhhhhhCCCCcEEEEEEeeCCCHHHHHHHHHHHHHhHHHHHhccccc-
Q 001731 736 SQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQ- 814 (1019)
Q Consensus 736 T~agg~GLNLt~A~~VIi~D~~WNp~~~~QaiGRa~RiGQ~k~V~VyrLit~gTiEEkI~~rq~~K~~l~~~~~~~~~~- 814 (1019)
|.+||.|||||+|++||+++-+|||..+.||++|||||||+|.|.||||+|+||+||||+..|.+|....+++++..+.
T Consensus 1402 ThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGTLEEKVMgLQkFKmnvAntvInqqNas 1481 (1549)
T KOG0392|consen 1402 THVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKVMGLQKFKMNVANTVINQQNAS 1481 (1549)
T ss_pred eeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhcccHHHHHhhHHHHhhHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999986653
Q ss_pred cccCCHHHHHHHHcC
Q 001731 815 IRYFSQQDLRELLSL 829 (1019)
Q Consensus 815 ~~~fs~~dL~eLf~~ 829 (1019)
+..+..++|.+||+.
T Consensus 1482 l~tM~TdqLLdlF~~ 1496 (1549)
T KOG0392|consen 1482 LETMDTDQLLDLFTV 1496 (1549)
T ss_pred ccccCHHHHHHHhcc
Confidence 667888999999983
No 5
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=1.3e-85 Score=754.02 Aligned_cols=491 Identities=32% Similarity=0.499 Sum_probs=407.8
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHHHHHHHHHHhcCCCcEEE
Q 001731 303 MLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVGLSAKIRE 382 (1019)
Q Consensus 303 ~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~qW~~E~~k~~~~~~v~~ 382 (1019)
+|.|||..||+||.-+|..+-.|||||+||||||+|+|+|+++++..+..+|.|||||++++.||.+||.+|||..+|..
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~~gpHLVVvPsSTleNWlrEf~kwCPsl~Ve~ 478 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGNPGPHLVVVPSSTLENWLREFAKWCPSLKVEP 478 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCCCCCcEEEecchhHHHHHHHHHHhCCceEEEe
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcccccchhhHHHHHh--hhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcchHHhHHhhc
Q 001731 383 YFGTCVKTRQYELQYV--LQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLE 460 (1019)
Q Consensus 383 ~~g~~~~~~~~~~~~~--~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s~~~kal~~ 460 (1019)
|+|+...++....... ...|+|++|||.++..... +...+...+|+++|.||||.+||..|.+++-+..
T Consensus 479 YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kd---------DRsflk~~~~n~viyDEgHmLKN~~SeRy~~LM~ 549 (941)
T KOG0389|consen 479 YYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKD---------DRSFLKNQKFNYVIYDEGHMLKNRTSERYKHLMS 549 (941)
T ss_pred ccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChH---------HHHHHHhccccEEEecchhhhhccchHHHHHhcc
Confidence 9998865544322222 2268999999999864432 1223457789999999999999999999999999
Q ss_pred CCcccEEEeecCCCCCCHHHHHHHHHhhcCCCCCCh-HHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHHHHhHHHHH
Q 001731 461 IPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDN-KWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFL 539 (1019)
Q Consensus 461 l~~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~-~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~~L~~~i~p~~l 539 (1019)
+++.+||+|||||+|||+.|||+||.|+.|..|.+. ..+...|...-.. .............+.+.+.+++||+|
T Consensus 550 I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~----d~d~e~~~l~qerIsrAK~im~PFIL 625 (941)
T KOG0389|consen 550 INANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTS----DGDIENALLSQERISRAKTIMKPFIL 625 (941)
T ss_pred ccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCc----cchhhHHHHHHHHHHHHHHhhhHHHH
Confidence 999999999999999999999999999999988765 4555555432111 22223333444567888999999999
Q ss_pred HhhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhHHHh-hhcCC----ChHHHHHHHHHHhcChhhhhh
Q 001731 540 RRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVL-SAFDG----SPLAALTILKKICDHPLLLTK 614 (1019)
Q Consensus 540 RR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~-~~~~~----~~l~~l~~Lrkic~hP~ll~~ 614 (1019)
||.|.+|+. .||+|..++.+|.|+..|+++|..++...... ..... .....+++||++++||.|+..
T Consensus 626 RR~K~qVL~--------~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~ 697 (941)
T KOG0389|consen 626 RRLKSQVLK--------QLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRS 697 (941)
T ss_pred HHHHHHHHH--------hcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHH
Confidence 999999965 59999999999999999999999998754211 11111 124588999999999999987
Q ss_pred hhhhhhhhhccCCCCh-------------hHHHHHHHHHHHH--hhh--hhhhhhhhhccchhhhHHHHHHHHHhhccCC
Q 001731 615 RAAEDVLDGMDSMLNP-------------EDAALAEKLAMHI--ADV--AEKDDFQEQHDNISCKISFILSLLDKLIPEG 677 (1019)
Q Consensus 615 ~~~~~~~~~~~~~~~~-------------e~~~~~~~l~~~~--~~~--~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g 677 (1019)
....+.+..|...+-. ++.+....+..|. ... .....+....+-.|+|...|..||.++...|
T Consensus 698 ~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G 777 (941)
T KOG0389|consen 698 IYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKG 777 (941)
T ss_pred hccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcC
Confidence 7666555554433221 1222222211111 111 1112233334456999999999999999999
Q ss_pred CceeEecccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCCC
Q 001731 678 HNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPA 757 (1019)
Q Consensus 678 ~KvLIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~ 757 (1019)
+||||||||+.|||||+.+|...+++|+|+||+|....|+.+|+.|+.+.+++|||+||+|||.||||++||+||++|.+
T Consensus 778 ~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~d 857 (941)
T KOG0389|consen 778 DRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDID 857 (941)
T ss_pred CEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhhhhhhhhhhCCCCcEEEEEEeeCCCHHHHHHHHHHHHHhHHHHHhccccc
Q 001731 758 WNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQ 814 (1019)
Q Consensus 758 WNp~~~~QaiGRa~RiGQ~k~V~VyrLit~gTiEEkI~~rq~~K~~l~~~~~~~~~~ 814 (1019)
+||..+.||.+||||+||+|+|+|||||+.+||||.|++....|..|-..++++.+.
T Consensus 858 FNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt~~~k~ 914 (941)
T KOG0389|consen 858 FNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLTEDGKG 914 (941)
T ss_pred CCCcccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhhccCccc
Confidence 999999999999999999999999999999999999999999999998888876544
No 6
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=3.5e-84 Score=770.11 Aligned_cols=479 Identities=34% Similarity=0.558 Sum_probs=410.1
Q ss_pred Ccccc-CCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcC-CCCeEEEEeCcccHHHHHHHHHHh
Q 001731 297 PGKIG-NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSR-LIKRALVVAPKTLLSHWIKELTAV 374 (1019)
Q Consensus 297 p~~i~-~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~-~~~~~LIVvP~sLl~qW~~E~~k~ 374 (1019)
|.++. ..||+||.+|++||+..|+.+.+|||||+||||||+|+|+|+.+++... ..+|+|||||.+.+.+|.+||..|
T Consensus 363 p~~~~g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~~W~~ef~~w 442 (1373)
T KOG0384|consen 363 PEYKGGNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTITAWEREFETW 442 (1373)
T ss_pred ccccccchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhHHHHHHHHHH
Confidence 44443 5899999999999999999999999999999999999999999998877 778999999999999999999999
Q ss_pred cCCCcEEEEcccccchhhHHHHHh-h-h-----CCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCccc
Q 001731 375 GLSAKIREYFGTCVKTRQYELQYV-L-Q-----DKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLI 447 (1019)
Q Consensus 375 ~~~~~v~~~~g~~~~~~~~~~~~~-~-~-----~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~i 447 (1019)
. ..++++|+|....+.-.....+ . . +++++||||+++.++...+ ..+.|.++++||||++
T Consensus 443 ~-~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~L------------~~i~w~~~~vDeahrL 509 (1373)
T KOG0384|consen 443 T-DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAEL------------SKIPWRYLLVDEAHRL 509 (1373)
T ss_pred h-hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhhh------------ccCCcceeeecHHhhc
Confidence 9 8999999997655432221111 1 1 4789999999997765544 4788999999999999
Q ss_pred CCcchHHhHHhhcCCcccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHH
Q 001731 448 KNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVA 527 (1019)
Q Consensus 448 KN~~s~~~kal~~l~~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~ 527 (1019)
||..++.+..+..+...||+++||||+||++.|||+|++|+.|+.|.++..|...|... ...-+
T Consensus 510 kN~~~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~----------------~e~~~ 573 (1373)
T KOG0384|consen 510 KNDESKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEE----------------TEEQV 573 (1373)
T ss_pred CchHHHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcch----------------hHHHH
Confidence 99999999999999999999999999999999999999999999999999999877211 12335
Q ss_pred HHHHHHhHHHHHHhhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhHHHh--hhcC---CChHHHHHHH
Q 001731 528 KELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVL--SAFD---GSPLAALTIL 602 (1019)
Q Consensus 528 ~~L~~~i~p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~--~~~~---~~~l~~l~~L 602 (1019)
..|+..|+|+||||++.+| ...||++.+.++.|.||..|++.|+.+|...... .... .+.++.++.|
T Consensus 574 ~~L~~~L~P~~lRr~kkdv--------ekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmEL 645 (1373)
T KOG0384|consen 574 RKLQQILKPFLLRRLKKDV--------EKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMEL 645 (1373)
T ss_pred HHHHHHhhHHHHHHHHhhh--------ccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHH
Confidence 6799999999999999999 5579999999999999999999999999875422 1111 3578889999
Q ss_pred HHHhcChhhhhhhhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhccCCCceeE
Q 001731 603 KKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLI 682 (1019)
Q Consensus 603 rkic~hP~ll~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLI 682 (1019)
|+|||||+|+...... .+.+.. .+ ..+.........|+|+..|.+||..++..||||||
T Consensus 646 kKccNHpyLi~gaee~-~~~~~~---------------~~-----~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLI 704 (1373)
T KOG0384|consen 646 KKCCNHPYLIKGAEEK-ILGDFR---------------DK-----MRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLI 704 (1373)
T ss_pred HHhcCCccccCcHHHH-HHHhhh---------------hc-----chHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEE
Confidence 9999999998753221 111100 00 01122233445799999999999999999999999
Q ss_pred ecccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcC-CCccEEEEecCCcccccCcccCCEEEEcCCCCCch
Q 001731 683 FSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEG-DVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPS 761 (1019)
Q Consensus 683 Fsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~-~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~ 761 (1019)
|||++.|||+|+++|..++|+|-||||+++.+-|+.+|++||.. ...+|||+||+|||+||||+.|++|||||.+|||+
T Consensus 705 FSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQ 784 (1373)
T KOG0384|consen 705 FSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQ 784 (1373)
T ss_pred hHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcc
Confidence 99999999999999999999999999999999999999999974 45789999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhCCCCcEEEEEEeeCCCHHHHHHHHHHHHHhHHHHHhccc------cccccCCHHHHHHHHcCCCCC
Q 001731 762 TDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHK------EQIRYFSQQDLRELLSLPKQG 833 (1019)
Q Consensus 762 ~~~QaiGRa~RiGQ~k~V~VyrLit~gTiEEkI~~rq~~K~~l~~~~~~~~------~~~~~fs~~dL~eLf~~~~~~ 833 (1019)
.+.||+.|||||||++.|.||||+|.+|+||-|+.|+..|..|-.+++... .....|+++||..|+.++..+
T Consensus 785 NDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk~KmvLD~aVIQ~m~t~~~~s~~~~f~K~ELsaILKfGA~~ 862 (1373)
T KOG0384|consen 785 NDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAKLKMVLDHAVIQRMDTKGKTSKSNPFSKEELSAILKFGAYE 862 (1373)
T ss_pred hHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHHHHhhhHHHHHHhhccccccCCCCCCCHHHHHHHHHhchHH
Confidence 999999999999999999999999999999999999999999888776432 235679999999999876443
No 7
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=1.2e-82 Score=786.97 Aligned_cols=476 Identities=32% Similarity=0.521 Sum_probs=407.4
Q ss_pred ccCccccCCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhh-cCCCCeEEEEeCcccHHHHHHHHHH
Q 001731 295 MLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFH-SRLIKRALVVAPKTLLSHWIKELTA 373 (1019)
Q Consensus 295 ~lp~~i~~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~-~~~~~~~LIVvP~sLl~qW~~E~~k 373 (1019)
..|..+...|+|||++||+||+.++..+.||||||+||||||+|+|+++.++.. .+..+|+|||||++++.||..||.+
T Consensus 161 ~qP~~i~~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~SlL~nW~~Ei~k 240 (1033)
T PLN03142 161 VQPSCIKGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWMNEIRR 240 (1033)
T ss_pred cCChHhccchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeChHHHHHHHHHHHH
Confidence 357778889999999999999999999999999999999999999999998875 3556799999999999999999999
Q ss_pred hcCCCcEEEEcccccchhhHHHH-HhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcch
Q 001731 374 VGLSAKIREYFGTCVKTRQYELQ-YVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPST 452 (1019)
Q Consensus 374 ~~~~~~v~~~~g~~~~~~~~~~~-~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s 452 (1019)
|+|...+..++|....+...... .....++|+||||+++.+....+ ....|++|||||||+|||..|
T Consensus 241 w~p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~L------------~k~~W~~VIvDEAHrIKN~~S 308 (1033)
T PLN03142 241 FCPVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTAL------------KRFSWRYIIIDEAHRIKNENS 308 (1033)
T ss_pred HCCCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHHh------------ccCCCCEEEEcCccccCCHHH
Confidence 99999999998876543321111 12346899999999998765443 356799999999999999999
Q ss_pred HHhHHhhcCCcccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHHH
Q 001731 453 QRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRE 532 (1019)
Q Consensus 453 ~~~kal~~l~~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~~L~~ 532 (1019)
+++++++.+++.+||+|||||++|++.|||++++|+.|+.|++...|..+|..+... ........|+.
T Consensus 309 klskalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~------------~~~e~i~~L~~ 376 (1033)
T PLN03142 309 LLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGEN------------DQQEVVQQLHK 376 (1033)
T ss_pred HHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHcccccc------------chHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999763211 12245678999
Q ss_pred HhHHHHHHhhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhHHHhhhc---CCChHHHHHHHHHHhcCh
Q 001731 533 RIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAF---DGSPLAALTILKKICDHP 609 (1019)
Q Consensus 533 ~i~p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~---~~~~l~~l~~Lrkic~hP 609 (1019)
+++||++||+|.+|. ..||++.+.+++|.||+.|+.+|..++......... ....+..++.||++|+||
T Consensus 377 ~L~pf~LRR~KsdV~--------~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP 448 (1033)
T PLN03142 377 VLRPFLLRRLKSDVE--------KGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHP 448 (1033)
T ss_pred HhhHHHhhhhHHHHh--------hhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCH
Confidence 999999999999994 359999999999999999999999998754322211 123577889999999999
Q ss_pred hhhhhhhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhccCCCceeEecccHHH
Q 001731 610 LLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKM 689 (1019)
Q Consensus 610 ~ll~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ 689 (1019)
+++...... .... ........|+|+.+|..+|..+...|+||||||||+.+
T Consensus 449 ~L~~~~ep~------~~~~-----------------------~~e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~ 499 (1033)
T PLN03142 449 YLFQGAEPG------PPYT-----------------------TGEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRL 499 (1033)
T ss_pred Hhhhccccc------Cccc-----------------------chhHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHH
Confidence 987532110 0000 00111236899999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCC-CccEEEEecCCcccccCcccCCEEEEcCCCCCchhhhhhhh
Q 001731 690 LNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGD-VAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVD 768 (1019)
Q Consensus 690 ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~-~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QaiG 768 (1019)
+++|+.+|...|++|++|+|+++..+|+.+|+.|+.+. ..+|||+||+|||+||||+.|++||+||++|||+.+.||+|
T Consensus 500 LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAid 579 (1033)
T PLN03142 500 LDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQD 579 (1033)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHH
Confidence 99999999999999999999999999999999999754 45689999999999999999999999999999999999999
Q ss_pred hhhhhCCCCcEEEEEEeeCCCHHHHHHHHHHHHHhHHHHHhccccc--cccCCHHHHHHHHcCCC
Q 001731 769 RAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQ--IRYFSQQDLRELLSLPK 831 (1019)
Q Consensus 769 Ra~RiGQ~k~V~VyrLit~gTiEEkI~~rq~~K~~l~~~~~~~~~~--~~~fs~~dL~eLf~~~~ 831 (1019)
|+|||||+++|+||||++.|||||+|+.++..|..+...+++.... ...++.++|.+||.++.
T Consensus 580 RaHRIGQkk~V~VyRLIt~gTIEEkIlera~~Kl~Ld~~Vi~~g~~~~~~~~~~~eL~~ll~~ga 644 (1033)
T PLN03142 580 RAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRYGA 644 (1033)
T ss_pred HhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHhcCcccccccCCHHHHHHHHHhCh
Confidence 9999999999999999999999999999999999999999875432 25689999999998754
No 8
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=6.6e-82 Score=725.48 Aligned_cols=584 Identities=28% Similarity=0.437 Sum_probs=462.9
Q ss_pred ccccCccccCCCchHHHHHHHHHHHhh---------cCCCceEEEcCCCchHHHHHHHHHHHHhhcC--CCCeEEEEeCc
Q 001731 293 TYMLPGKIGNMLFPHQREGLRWLWSLH---------CQGKGGILGDDMGLGKTMQICGFLAGLFHSR--LIKRALVVAPK 361 (1019)
Q Consensus 293 ~~~lp~~i~~~L~phQ~egV~~L~~~~---------~~~~GgILaDemGLGKTlqaIali~~l~~~~--~~~~~LIVvP~ 361 (1019)
.+.+|..|...|+|||..||+|||... ..|-||||||-||||||+|+|+|+..++... ..+++|||||.
T Consensus 658 ~VqV~rslv~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~Pl 737 (1567)
T KOG1015|consen 658 LVQVHRSLVIKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVCPL 737 (1567)
T ss_pred hhhccHhHHhhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEEEcch
Confidence 456788899999999999999999742 3578999999999999999999998887643 34699999999
Q ss_pred ccHHHHHHHHHHhcCCC----cEEEEcccc---cchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcc-c--CcCCC
Q 001731 362 TLLSHWIKELTAVGLSA----KIREYFGTC---VKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFI-S--DEAGD 431 (1019)
Q Consensus 362 sLl~qW~~E~~k~~~~~----~v~~~~g~~---~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~-~--~~~~~ 431 (1019)
+++.||.+||.+|.++. .+.++.-.. ...+.+.+..|...++|+|+.|+++++....-.....- . -...+
T Consensus 738 Nt~~NW~~EFekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~l 817 (1567)
T KOG1015|consen 738 NTALNWMNEFEKWMEGLEDDEKLEVSELATVKRPEERSYMLQRWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKAL 817 (1567)
T ss_pred HHHHHHHHHHHHhcccccccccceeehhhhccChHHHHHHHHHHHhcCCEEEEehHHHHHHhcccchhhhHHHHHHHHhc
Confidence 99999999999998863 233333222 24566778888899999999999998754321110000 0 01112
Q ss_pred CCCCccEEEEcCCcccCCcchHHhHHhhcCCcccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCC
Q 001731 432 DDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGN 511 (1019)
Q Consensus 432 ~~~~wd~VIlDEAH~iKN~~s~~~kal~~l~~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~ 511 (1019)
-.-++|+|||||||.|||..+.+++++..+++++||+|||||+||||.|+|++++|+.|++||+..+|.++|.+||.+|+
T Consensus 818 vdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs~~EfrNRFvNpI~nGq 897 (1567)
T KOG1015|consen 818 VDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGSIKEFRNRFVNPIQNGQ 897 (1567)
T ss_pred cCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcccccccCcHHHHHhhcCccccCc
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhHHHHhhHHHHHHHHHHhHHHHHHhhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhHHHh---
Q 001731 512 DKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVL--- 588 (1019)
Q Consensus 512 ~~~a~~~e~~~~~~~~~~L~~~i~p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~--- 588 (1019)
+.+++..+..++......|+.+|..++-|+--.-+ ...|||+.+++|.++||+.|..+|..|+......
T Consensus 898 ~~dST~~DVr~Mk~RsHILye~LkgcVqRkDy~Vl--------tk~LPPK~eyVi~vrltelQ~~LYq~yL~h~~~~G~d 969 (1567)
T KOG1015|consen 898 CADSTMVDVRVMKKRSHILYEMLKGCVQRKDYTVL--------TKFLPPKHEYVIAVRLTELQCKLYQYYLDHLTGVGND 969 (1567)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh--------cccCCCceeEEEEEeccHHHHHHHHHHHhhccccCCc
Confidence 99999999999999999999999999988866555 5679999999999999999999999999832111
Q ss_pred ----hhcCCChHHHHHHHHHHhcChhhhhhhhhhhhhh------hccCCCChhH--------------------------
Q 001731 589 ----SAFDGSPLAALTILKKICDHPLLLTKRAAEDVLD------GMDSMLNPED-------------------------- 632 (1019)
Q Consensus 589 ----~~~~~~~l~~l~~Lrkic~hP~ll~~~~~~~~~~------~~~~~~~~e~-------------------------- 632 (1019)
.......++.+..|++|++||..+..+....... .+...+....
T Consensus 970 ~eg~~g~~arlf~dfqmlsrIwtHP~~lqL~s~~~enkR~~seddm~~fi~D~sde~e~s~~s~d~~~~~ks~~~s~~De 1049 (1567)
T KOG1015|consen 970 SEGGRGAGARLFQDFQMLSRIWTHPWCLQLDSISKENKRYFSEDDMDEFIADDSDETEMSLSSDDYTKKKKSGKKSKKDE 1049 (1567)
T ss_pred cccccchhhhHHHHHHHHHHHhcCCCceeechhhhhhcccccccchhccccCCCccccccccccchhhcccccccccccc
Confidence 1122346888999999999999876443211000 0111110000
Q ss_pred ----------HHH---HH------------------HHH-HHHhhhhhh---------hhhh-------hhccchhhhHH
Q 001731 633 ----------AAL---AE------------------KLA-MHIADVAEK---------DDFQ-------EQHDNISCKIS 664 (1019)
Q Consensus 633 ----------~~~---~~------------------~l~-~~~~~~~~~---------~~~~-------~~~~~~S~Kl~ 664 (1019)
... .. ... ..+.+.... .+|. ......|+||.
T Consensus 1050 sss~~~~~g~~ev~k~k~rk~r~~~~~~~~~~g~~~D~~l~ll~dlag~~s~~~d~ppew~kd~v~e~d~~v~~~SgKmi 1129 (1567)
T KOG1015|consen 1050 SSSGSGSDGDVEVIKVKNRKSRGGGEGNVDETGNNPDVSLKLLEDLAGSSSNPSDPPPEWYKDFVTEADAEVLEHSGKMI 1129 (1567)
T ss_pred cccccccCCchhhhhhhhhhccccccCcccccCCCcchHHHHhhcccccccCCCCCchHhHHhhhhhhhhhhhhcCccee
Confidence 000 00 000 000110000 0000 11123699999
Q ss_pred HHHHHHHhhccCCCceeEecccHHHHHHHHHHHhh----------------------cCCeEEEEECCCCHHHHHHHHHh
Q 001731 665 FILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGS----------------------KGYKFLRIDGTTKASDRVKIVND 722 (1019)
Q Consensus 665 ~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~~~L~~----------------------~gi~~~ridG~~s~~eR~~ii~~ 722 (1019)
.|+++|..+.+-|.|+|||||+..+|++|+.+|.. .|..|.+|||+++..+|++++++
T Consensus 1130 LLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~ 1209 (1567)
T KOG1015|consen 1130 LLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEE 1209 (1567)
T ss_pred hHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHH
Confidence 99999999999999999999999999999999963 26689999999999999999999
Q ss_pred hhcCCC--ccEEEEecCCcccccCcccCCEEEEcCCCCCchhhhhhhhhhhhhCCCCcEEEEEEeeCCCHHHHHHHHHHH
Q 001731 723 FQEGDV--APIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIF 800 (1019)
Q Consensus 723 F~~~~~--~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QaiGRa~RiGQ~k~V~VyrLit~gTiEEkI~~rq~~ 800 (1019)
||+..+ .++|||||+||++||||.+||+|||||..|||+.+.|++-|+||.||+++|+||||++.||+||+||.||+.
T Consensus 1210 FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmEeKIYkRQVT 1289 (1567)
T KOG1015|consen 1210 FNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTMEEKIYKRQVT 1289 (1567)
T ss_pred hcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcccHHHHHHHHHHh
Confidence 998655 558999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHhccccccccCCHHHHHHHHcCCCCCCCchhhHHHHhhhhcCCCCCChhHHHHHHHHhhcCcccccccccccc
Q 001731 801 KGGLFKTATEHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGDQHNMDESLEAHIQFLDTLGIAGVSHHSLLFS 880 (1019)
Q Consensus 801 K~~l~~~~~~~~~~~~~fs~~dL~eLf~~~~~~~~~s~tq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~h~~l~~ 880 (1019)
|+.+...+++.....|.|+++||.+||++.+.-++.... +. .-.-..+.+.+|+-..+..-|+|...|+.||.
T Consensus 1290 Kqsls~RVVDeqQv~Rhy~~neLteLy~fep~~ddp~sE------r~-~~~lpKdrllae~l~~~q~~i~~y~ehdSll~ 1362 (1567)
T KOG1015|consen 1290 KQSLSFRVVDEQQVERHYTMNELTELYTFEPDLDDPNSE------RD-TPMLPKDRLLAELLQIHQEHIVGYHEHDSLLD 1362 (1567)
T ss_pred HhhhhhhhhhHHHHHHHhhHhhhHHHhhcCCccCCcccc------cc-cccCCchhHHHHHHHHHHHHhhhhhhhhhhhc
Confidence 999999999999999999999999999998654443221 00 00011234556666666667999999999998
Q ss_pred hhhhhhccchH
Q 001731 881 KTARVQVVQEE 891 (1019)
Q Consensus 881 ~~~~~~~~~~~ 891 (1019)
..+..+.+.++
T Consensus 1363 ~~e~eelteee 1373 (1567)
T KOG1015|consen 1363 HKEEEELTEEE 1373 (1567)
T ss_pred chhHHHHHHHh
Confidence 87776666553
No 9
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=7.5e-81 Score=701.15 Aligned_cols=487 Identities=36% Similarity=0.572 Sum_probs=403.1
Q ss_pred CccccCccccCCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcC-CCCeEEEEeCcccHHHHHHH
Q 001731 292 STYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSR-LIKRALVVAPKTLLSHWIKE 370 (1019)
Q Consensus 292 ~~~~lp~~i~~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~-~~~~~LIVvP~sLl~qW~~E 370 (1019)
...+-|.-+..+|+.||..|++||..+|.+|-+|||||+||||||+|+|++++++.... .++|+|||+|++++.+|.+|
T Consensus 556 ~tV~qPkil~ctLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL~NWaqE 635 (1185)
T KOG0388|consen 556 RTVPQPKILKCTLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTLHNWAQE 635 (1185)
T ss_pred eeccCchhhhhhhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHHHhHHHHH
Confidence 34566777889999999999999999999999999999999999999999999998754 45799999999999999999
Q ss_pred HHHhcCCCcEEEEcccccchhhHHHHHh---------hhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEE
Q 001731 371 LTAVGLSAKIREYFGTCVKTRQYELQYV---------LQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMIL 441 (1019)
Q Consensus 371 ~~k~~~~~~v~~~~g~~~~~~~~~~~~~---------~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIl 441 (1019)
|.+|+|..++..|.|+...++ .+.+. ...++|+||||++++.+.+.++ ..+|.|+|+
T Consensus 636 isrFlP~~k~lpywGs~~eRk--iLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~q------------kvKWQYMIL 701 (1185)
T KOG0388|consen 636 ISRFLPSFKVLPYWGSPSERK--ILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQ------------KVKWQYMIL 701 (1185)
T ss_pred HHHhCccceeecCcCChhhhH--HHHHhcchhhhhccCCCceEEEEeeeeeechHHHHH------------hhhhhheeh
Confidence 999999999999988765432 23332 2357899999999998887765 677999999
Q ss_pred cCCcccCCcchHHhHHhhcCCcccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHH
Q 001731 442 DEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKR 521 (1019)
Q Consensus 442 DEAH~iKN~~s~~~kal~~l~~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~ 521 (1019)
|||+.||...|.+|+.+..++|+.|++||||||||+..|||+|++|+.|.+|.+..+|.+||.+.|......+.+-
T Consensus 702 DEAQAIKSSsS~RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFseWFSKdIEshAe~~~tl---- 777 (1185)
T KOG0388|consen 702 DEAQAIKSSSSSRWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAEMNTTL---- 777 (1185)
T ss_pred hHHHHhhhhhhhHHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhHHHhcCCc----
Confidence 9999999999999999999999999999999999999999999999999999999999999998876644433332
Q ss_pred hhHHHHHHHHHHhHHHHHHhhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHH
Q 001731 522 IGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTI 601 (1019)
Q Consensus 522 ~~~~~~~~L~~~i~p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~ 601 (1019)
....+.+|+.+++||||||.|.+|..+ |..|+++.|+|.||..|+.+|+.+..+-.... ...++++
T Consensus 778 -neqqL~RLH~ILKPFMLRRvKkdV~sE--------Lg~Kteidv~CdLs~RQ~~lYq~ik~~iS~~E-----~~~~vmQ 843 (1185)
T KOG0388|consen 778 -NEQQLQRLHAILKPFMLRRVKKDVISE--------LGQKTEIDVYCDLSYRQKVLYQEIKRSISSME-----MENLVMQ 843 (1185)
T ss_pred -CHHHHHHHHHHHhHHHHHHHHHHHHHH--------hccceEEEEEechhHHHHHHHHHHHHHhhHHH-----HHHHHHH
Confidence 334568899999999999999999664 88999999999999999999999876532221 1247899
Q ss_pred HHHHhcChhhhhhhhh------------hhhhhhccCC----------------------------------C-------
Q 001731 602 LKKICDHPLLLTKRAA------------EDVLDGMDSM----------------------------------L------- 628 (1019)
Q Consensus 602 Lrkic~hP~ll~~~~~------------~~~~~~~~~~----------------------------------~------- 628 (1019)
||++||||.|+.+... .++....... .
T Consensus 844 lrKVCNHPdLFer~e~~s~L~~~V~~nl~dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~~g~~~~v~Geg~~~ 923 (1185)
T KOG0388|consen 844 LRKVCNHPDLFERLEPRSGLSLEVSDNLGDVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIERINGLRRIVNGEGPNA 923 (1185)
T ss_pred HHHhcCChHHHhhcCCcceeEEEcccCHHHHHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHHHhhhHhhhcCCCcch
Confidence 9999999999864321 0000000000 0
Q ss_pred -----------------ChhHHH--HH-----------HHHHHHHhhhhh----------------------hhhh----
Q 001731 629 -----------------NPEDAA--LA-----------EKLAMHIADVAE----------------------KDDF---- 652 (1019)
Q Consensus 629 -----------------~~e~~~--~~-----------~~l~~~~~~~~~----------------------~~~~---- 652 (1019)
+.+... .. +.....+..... ..+.
T Consensus 924 w~~~l~~e~k~G~~~~~n~e~~~Kavtr~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~PeId 1003 (1185)
T KOG0388|consen 924 WYLRLSLEFKYGGYVFRNVEEAGKAVTRNLLNPESSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPEID 1003 (1185)
T ss_pred hcccceeeeccCCcccccHHHHHHHHHHHhcCcccchhHHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccCCCCCC
Confidence 000000 00 000000000000 0000
Q ss_pred ----------------hhhccchhhhHHHHHHHHHhhccCCCceeEecccHHHHHHHHHHHhhcCCeEEEEECCCCHHHH
Q 001731 653 ----------------QEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDR 716 (1019)
Q Consensus 653 ----------------~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eR 716 (1019)
.......|+|+..|.+||.++...|||||+|.|.++|+++|+++|..+||+|+|+||+.+...|
T Consensus 1004 ~E~~~~pLn~~i~~Ppm~~FitdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dR 1083 (1185)
T KOG0388|consen 1004 LENRHIPLNTTIYVPPMNTFITDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDR 1083 (1185)
T ss_pred ccccCcccccceecCcHHhhhccccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHH
Confidence 0001123899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCCCCCchhhhhhhhhhhhhCCCCcEEEEEEeeCCCHHHHHHH
Q 001731 717 VKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYR 796 (1019)
Q Consensus 717 ~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QaiGRa~RiGQ~k~V~VyrLit~gTiEEkI~~ 796 (1019)
..+|..|+. +.++|||+||+|||.|||||+|++||+||.+|||..+.||++||||.||+++|+||||++.|||||+|..
T Consensus 1084 rd~vrDwQ~-sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~ 1162 (1185)
T KOG0388|consen 1084 RDVVRDWQA-SDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLE 1162 (1185)
T ss_pred HHHHhhccC-CceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHH
Confidence 999999999 6689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHhcc
Q 001731 797 KQIFKGGLFKTATEH 811 (1019)
Q Consensus 797 rq~~K~~l~~~~~~~ 811 (1019)
+...|......++.+
T Consensus 1163 rA~qK~~vQq~Vm~G 1177 (1185)
T KOG0388|consen 1163 RANQKDEVQQMVMHG 1177 (1185)
T ss_pred HhhhHHHHHHHHHcC
Confidence 999998888877765
No 10
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=6e-78 Score=713.41 Aligned_cols=505 Identities=32% Similarity=0.530 Sum_probs=418.7
Q ss_pred CccccCccccCCCchHHHHHHHHHHHhhc------CCCceEEEcCCCchHHHHHHHHHHHHhhcCCC-----CeEEEEeC
Q 001731 292 STYMLPGKIGNMLFPHQREGLRWLWSLHC------QGKGGILGDDMGLGKTMQICGFLAGLFHSRLI-----KRALVVAP 360 (1019)
Q Consensus 292 ~~~~lp~~i~~~L~phQ~egV~~L~~~~~------~~~GgILaDemGLGKTlqaIali~~l~~~~~~-----~~~LIVvP 360 (1019)
.++.+-|.+...|||||++|+.|||+... ...|||+||+||+|||+|+|+|++.+++..+. .++|||||
T Consensus 227 v~v~~dP~l~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P 306 (776)
T KOG0390|consen 227 VHVVIDPLLKKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAP 306 (776)
T ss_pred ceEEecccHhhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEcc
Confidence 35667788999999999999999998632 45799999999999999999999999998777 89999999
Q ss_pred cccHHHHHHHHHHhcCC--CcEEEEcccccchhh-----HHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCC
Q 001731 361 KTLLSHWIKELTAVGLS--AKIREYFGTCVKTRQ-----YELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDD 433 (1019)
Q Consensus 361 ~sLl~qW~~E~~k~~~~--~~v~~~~g~~~~~~~-----~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~ 433 (1019)
++|+.+|.+||.+|... .....+.+.....-. ....+..-.+-|++++|+.++.+...+. .
T Consensus 307 ~sLv~nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~il------------~ 374 (776)
T KOG0390|consen 307 SSLVNNWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRKIL------------L 374 (776)
T ss_pred HHHHHHHHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHHHh------------c
Confidence 99999999999999764 344444444332000 0111122235689999999987666543 4
Q ss_pred CCccEEEEcCCcccCCcchHHhHHhhcCCcccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCc
Q 001731 434 AIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDK 513 (1019)
Q Consensus 434 ~~wd~VIlDEAH~iKN~~s~~~kal~~l~~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~ 513 (1019)
..+++|||||||++||..+.+++++..+++++||+|||||+||++.|+|++++|++|+.+++...|...|..|+..++..
T Consensus 375 ~~~glLVcDEGHrlkN~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~ 454 (776)
T KOG0390|consen 375 IRPGLLVCDEGHRLKNSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDA 454 (776)
T ss_pred CCCCeEEECCCCCccchhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCC
Confidence 55899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred chhhHHHHhhHHHHHHHHHHhHHHHHHhhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhHHHhhhcCC
Q 001731 514 HALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDG 593 (1019)
Q Consensus 514 ~a~~~e~~~~~~~~~~L~~~i~p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~ 593 (1019)
.++...... .+.+++|+.++..|++||+.... ...||.+.+++|+|.+++.|+.+|..+++.. ......+
T Consensus 455 ~~s~e~~~~-~~rl~eL~~~t~~fi~rrt~~il--------~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~-~~~~~~~ 524 (776)
T KOG0390|consen 455 DASEEDRER-EERLQELRELTNKFILRRTGDIL--------LKYLPGKYEYVVFCNPTPIQKELYKKLLDSM-KMRTLKG 524 (776)
T ss_pred Ccchhhhhh-HHHHHHHHHHHHhheeecccchh--------hhhCCCceeEEEEeCCcHHHHHHHHHHHHHH-Hhhhhhc
Confidence 888877776 56689999999999999998554 5679999999999999999999999999987 6666677
Q ss_pred ChHHHHHHHHHHhcChhhhhhhhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhh
Q 001731 594 SPLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKL 673 (1019)
Q Consensus 594 ~~l~~l~~Lrkic~hP~ll~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~ 673 (1019)
..+..++.|+++|+||.|+....... .-.....+..... .............|+|+..|+.+|...
T Consensus 525 ~~l~~~~~L~k~cnhP~L~~~~~~~~---~e~~~~~~~~~~~-----------~~~~~~~~~~~~ks~kl~~L~~ll~~~ 590 (776)
T KOG0390|consen 525 YALELITKLKKLCNHPSLLLLCEKTE---KEKAFKNPALLLD-----------PGKLKLDAGDGSKSGKLLVLVFLLEVI 590 (776)
T ss_pred chhhHHHHHHHHhcCHHhhccccccc---ccccccChHhhhc-----------ccccccccccchhhhHHHHHHHHHHHH
Confidence 79999999999999999985211100 0000000000000 000011112223589999999998666
Q ss_pred cc-CCCceeEecccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCc-cEEEEecCCcccccCcccCCEE
Q 001731 674 IP-EGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVA-PIFLLTSQVGGLGLTLTKADRV 751 (1019)
Q Consensus 674 ~~-~g~KvLIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~-~V~LlST~agg~GLNLt~A~~V 751 (1019)
.+ ...++++-++++.++++++..+..+|+.++++||+|+..+|+.+|+.||+.... +|||+|++|||+||||.+|+||
T Consensus 591 ~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRl 670 (776)
T KOG0390|consen 591 REKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRL 670 (776)
T ss_pred hhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceE
Confidence 44 335666777889999999999999999999999999999999999999988776 9999999999999999999999
Q ss_pred EEcCCCCCchhhhhhhhhhhhhCCCCcEEEEEEeeCCCHHHHHHHHHHHHHhHHHHHhcccc-ccccCCHHHHHHHHcCC
Q 001731 752 IVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKE-QIRYFSQQDLRELLSLP 830 (1019)
Q Consensus 752 Ii~D~~WNp~~~~QaiGRa~RiGQ~k~V~VyrLit~gTiEEkI~~rq~~K~~l~~~~~~~~~-~~~~fs~~dL~eLf~~~ 830 (1019)
|+|||+|||+.+.||++||||.||+|+|+||||++.||+||+||+||..|..+...+++... ..+.|+.++++.||.+.
T Consensus 671 il~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiEEk~~qrq~~K~~lS~~v~~~~~~~~~~~~~~~~~~lf~~~ 750 (776)
T KOG0390|consen 671 ILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIEEKIYQRQTHKEGLSSMVFDEEEDVEKHFFTEDLKTLFDLE 750 (776)
T ss_pred EEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCCCchHHHHHHHHHhhhhhheEEecccccccccchHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999998654 34567778999999875
Q ss_pred CC
Q 001731 831 KQ 832 (1019)
Q Consensus 831 ~~ 832 (1019)
..
T Consensus 751 ~~ 752 (776)
T KOG0390|consen 751 LD 752 (776)
T ss_pred cc
Confidence 43
No 11
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1e-76 Score=694.67 Aligned_cols=460 Identities=33% Similarity=0.558 Sum_probs=404.9
Q ss_pred cCCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhc-CCCCeEEEEeCcccHHHHHHHHHHhcCCCc
Q 001731 301 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHS-RLIKRALVVAPKTLLSHWIKELTAVGLSAK 379 (1019)
Q Consensus 301 ~~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~-~~~~~~LIVvP~sLl~qW~~E~~k~~~~~~ 379 (1019)
+.+|++||+.|++||..+|..+-+|||||+||||||+|+|+++.+++.. +..+|.|||||.+++.+|..||.+|.|+..
T Consensus 392 GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~NW~~Ef~kWaPSv~ 471 (1157)
T KOG0386|consen 392 GGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVNWSSEFPKWAPSVQ 471 (1157)
T ss_pred CCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCCchhhcccccccee
Confidence 3489999999999999999999999999999999999999999999875 456799999999999999999999999999
Q ss_pred EEEEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcchHHhHHhh
Q 001731 380 IREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLL 459 (1019)
Q Consensus 380 v~~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s~~~kal~ 459 (1019)
...|.|+...++.........+++|++|||+.+.++...+ ..+.|.|+||||+|++||..++.+..+.
T Consensus 472 ~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiikdk~lL------------sKI~W~yMIIDEGHRmKNa~~KLt~~L~ 539 (1157)
T KOG0386|consen 472 KIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIKDKALL------------SKISWKYMIIDEGHRMKNAICKLTDTLN 539 (1157)
T ss_pred eeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcCCHHHH------------hccCCcceeecccccccchhhHHHHHhh
Confidence 9999999888877766666688999999999998755444 4778999999999999999999999998
Q ss_pred -cCCcccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCC-cchhhHHHHhhHHHHHHHHHHhHHH
Q 001731 460 -EIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGND-KHALDREKRIGSAVAKELRERIQPY 537 (1019)
Q Consensus 460 -~l~~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~-~~a~~~e~~~~~~~~~~L~~~i~p~ 537 (1019)
...+.+|++|||||+||++.|||+||+|+-|.+|.+...|..||..|+...+. ...+..+.. -++.+|+..++||
T Consensus 540 t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtl---LIIrRLHkVLRPF 616 (1157)
T KOG0386|consen 540 THYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETL---LIIRRLHKVLRPF 616 (1157)
T ss_pred ccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHH---HHHHHHHHhhhHH
Confidence 67899999999999999999999999999999999999999999999988775 344444333 3678899999999
Q ss_pred HHHhhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhHHHh------hhcCCChHHHHHHHHHHhcChhh
Q 001731 538 FLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVL------SAFDGSPLAALTILKKICDHPLL 611 (1019)
Q Consensus 538 ~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~------~~~~~~~l~~l~~Lrkic~hP~l 611 (1019)
++||+|.+| ...||.|++.++.|.||..|+.+|..+.+..... ....+.....++.||+|||||++
T Consensus 617 lLRRlKkeV--------E~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~l 688 (1157)
T KOG0386|consen 617 LLRRLKKEV--------EQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYL 688 (1157)
T ss_pred HHHhhhHHH--------hhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchh
Confidence 999999999 4569999999999999999999999998764433 11223467788999999999999
Q ss_pred hhhhhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhccCCCceeEecccHHHHH
Q 001731 612 LTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLN 691 (1019)
Q Consensus 612 l~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ld 691 (1019)
+..... .+..... .......|+|+..|.++|.++++.||+||.|||.+.+++
T Consensus 689 f~~ve~-----~~~~~~~-----------------------~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmd 740 (1157)
T KOG0386|consen 689 FANVEN-----SYTLHYD-----------------------IKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMD 740 (1157)
T ss_pred hhhhcc-----ccccccC-----------------------hhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHH
Confidence 853210 0000000 012234799999999999999999999999999999999
Q ss_pred HHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcC-CCccEEEEecCCcccccCcccCCEEEEcCCCCCchhhhhhhhhh
Q 001731 692 LIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEG-DVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRA 770 (1019)
Q Consensus 692 iL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~-~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QaiGRa 770 (1019)
+++.+|..++++|.|+||+++..+|-.+++.||.. ..+++||+||++||+||||+.|++||+||+.|||..+.||.+|+
T Consensus 741 imEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdra 820 (1157)
T KOG0386|consen 741 ILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRA 820 (1157)
T ss_pred HHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHH
Confidence 99999999999999999999999999999999974 45889999999999999999999999999999999999999999
Q ss_pred hhhCCCCcEEEEEEeeCCCHHHHHHHHHHHHHhHHHHHhcc
Q 001731 771 YRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEH 811 (1019)
Q Consensus 771 ~RiGQ~k~V~VyrLit~gTiEEkI~~rq~~K~~l~~~~~~~ 811 (1019)
|||||+++|.|+||++.+++||+|++++..|.++-+.++..
T Consensus 821 hrigq~~evRv~rl~tv~sveE~il~~a~~Kl~~d~kviqa 861 (1157)
T KOG0386|consen 821 HRIGQKKEVRVLRLITVNSVEEKILAEAFYKLDVDGKVIQA 861 (1157)
T ss_pred HHhhchhheeeeeeehhhHHHHHHHHHHHHhcCchHhhhhc
Confidence 99999999999999999999999999999998887777643
No 12
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=1.2e-71 Score=608.25 Aligned_cols=515 Identities=27% Similarity=0.384 Sum_probs=397.6
Q ss_pred cccCccccCCCchHHHHHHHHHHHhhc-CCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHHHHHHHHH
Q 001731 294 YMLPGKIGNMLFPHQREGLRWLWSLHC-QGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELT 372 (1019)
Q Consensus 294 ~~lp~~i~~~L~phQ~egV~~L~~~~~-~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~qW~~E~~ 372 (1019)
..-|..+...|.|||++|+.|+..... ...||||||+||+|||+|+|+++.+ .....|+|||||.-.+.||.+|+.
T Consensus 175 aeqP~dlii~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLlla---e~~ra~tLVvaP~VAlmQW~nEI~ 251 (791)
T KOG1002|consen 175 AEQPDDLIIPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLA---EVDRAPTLVVAPTVALMQWKNEIE 251 (791)
T ss_pred ccCcccceecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHh---ccccCCeeEEccHHHHHHHHHHHH
Confidence 345777888899999999999998755 5689999999999999999998876 233458999999999999999999
Q ss_pred HhcC-CCcEEEEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccc-----cCCCcccCcCCCCCCCccEEEEcCCcc
Q 001731 373 AVGL-SAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSL-----RGSSFISDEAGDDDAIWDYMILDEGHL 446 (1019)
Q Consensus 373 k~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l-----~~~~~~~~~~~~~~~~wd~VIlDEAH~ 446 (1019)
++.. ..++.+|+|........ .+..||||+|||..+.+.+... +.....+....+..+.|.+||+||||.
T Consensus 252 ~~T~gslkv~~YhG~~R~~nik----el~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~ 327 (791)
T KOG1002|consen 252 RHTSGSLKVYIYHGAKRDKNIK----ELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHN 327 (791)
T ss_pred HhccCceEEEEEecccccCCHH----HhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhcc
Confidence 9865 45788888865443322 2458999999999886554331 111122334556788999999999999
Q ss_pred cCCcchHHhHHhhcCCcccEEEeecCCCCCCHHHHHHHHHhhcCCCCCCh------------------------------
Q 001731 447 IKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDN------------------------------ 496 (1019)
Q Consensus 447 iKN~~s~~~kal~~l~~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~------------------------------ 496 (1019)
||+..+.+++++..+.+.+||||||||+||++.|||+|++|++..+|..+
T Consensus 328 IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~~~~~~ftdr~~c~~c~h~~m~h 407 (791)
T KOG1002|consen 328 IKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCASLDWKFTDRMHCDHCSHNIMQH 407 (791)
T ss_pred cccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhccccccceeecccccCCcccchhhhh
Confidence 99999999999999999999999999999999999999999987765422
Q ss_pred -HHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHHHHhHHHHHHhhhhcccccCccccccccCccceEEEEEcCCHHHH
Q 001731 497 -KWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQR 575 (1019)
Q Consensus 497 -~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~~L~~~i~p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~ 575 (1019)
.+|......||...+... .|...+...+..++.+|+||++-.-.. ...||+....+..--++..+.
T Consensus 408 ~~~~n~~mlk~IqkfG~eG-------pGk~af~~~h~llk~ImlrrTkl~RAd------DLgLPPRiv~vRrD~fn~eE~ 474 (791)
T KOG1002|consen 408 TCFFNHFMLKPIQKFGVEG-------PGKEAFNNIHTLLKNIMLRRTKLERAD------DLGLPPRIVTVRRDFFNEEEK 474 (791)
T ss_pred hhhhcccccccchhhcccC-------chHHHHHHHHHHHHHHHHHHhhccccc------ccCCCccceeeehhhhhhHHH
Confidence 111122223333322111 244556678889999999999976543 456888888777778899999
Q ss_pred HHHHHHHhhHH----------HhhhcCCChHHHHHHHHHHhcChhhhhhhhhhhhhhhccC----CC--ChhHHHHHHH-
Q 001731 576 QLYEAFLNSEI----------VLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLDGMDS----ML--NPEDAALAEK- 638 (1019)
Q Consensus 576 ~lY~~~l~~~~----------~~~~~~~~~l~~l~~Lrkic~hP~ll~~~~~~~~~~~~~~----~~--~~e~~~~~~~- 638 (1019)
.+|+.+..... .......+++..+++|||+++||+|+...+...+...-.. .+ ++....+...
T Consensus 475 D~YeSLY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S~~~n~~~enk~~~~C~lc~d~aed~i~s~C 554 (791)
T KOG1002|consen 475 DLYESLYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLYSANANLPDENKGEVECGLCHDPAEDYIESSC 554 (791)
T ss_pred HHHHHHHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeeehhhcCCCccccCceeecccCChhhhhHhhhh
Confidence 99998764211 1122234578899999999999999876433222221110 01 1111111111
Q ss_pred ---HHHH-H----hhh-------------------h----h---hhh---------hhhhccchhhhHHHHHHHHHhhcc
Q 001731 639 ---LAMH-I----ADV-------------------A----E---KDD---------FQEQHDNISCKISFILSLLDKLIP 675 (1019)
Q Consensus 639 ---l~~~-~----~~~-------------------~----~---~~~---------~~~~~~~~S~Kl~~L~~LL~~~~~ 675 (1019)
+... + ..+ . + ... +.-.....|.|+++|.+-|..+.+
T Consensus 555 hH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~alek~~l~~Fk~sSIlnRinm~~~qsSTKIEAL~EEl~~l~~ 634 (791)
T KOG1002|consen 555 HHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPALEKTDLKGFKASSILNRINMDDWQSSTKIEALVEELYFLRE 634 (791)
T ss_pred hHHHHHHHHHHHHHhhhcccCCCCccccccccccccchhhhhcchhhhhhHHHhhhcchhhhcchhHHHHHHHHHHHHHH
Confidence 0000 0 000 0 0 000 001123469999999999988876
Q ss_pred CC--CceeEecccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEE
Q 001731 676 EG--HNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIV 753 (1019)
Q Consensus 676 ~g--~KvLIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi 753 (1019)
.+ -|.||||||+.||++|...|.+.|+.++.+.|+|+++.|...|+.|.++.++.|||+|.+|||+.|||+.|++|++
T Consensus 635 rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFm 714 (791)
T KOG1002|consen 635 RDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFM 714 (791)
T ss_pred cccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEe
Confidence 44 5789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCchhhhhhhhhhhhhCCCCcEEEEEEeeCCCHHHHHHHHHHHHHhHHHHHhcccc-ccccCCHHHHHHHHc
Q 001731 754 VDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKE-QIRYFSQQDLRELLS 828 (1019)
Q Consensus 754 ~D~~WNp~~~~QaiGRa~RiGQ~k~V~VyrLit~gTiEEkI~~rq~~K~~l~~~~~~~~~-~~~~fs~~dL~eLf~ 828 (1019)
+||||||+...||.+|+|||||.++|.|.||+..+|||++|.+.|..|..++.+.+++.+ ....++.+|++-||.
T Consensus 715 mDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~mihaTi~qde~Ai~kLt~eDmqfLF~ 790 (791)
T KOG1002|consen 715 MDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKKANMIHATIGQDEEAISKLTEEDMQFLFN 790 (791)
T ss_pred ecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHHhhhhhhhcCCcHHHHHhcCHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999887654 567899999999985
No 13
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=3.4e-70 Score=619.22 Aligned_cols=518 Identities=30% Similarity=0.451 Sum_probs=404.0
Q ss_pred ccCCCCccccCccccCCCchHHHHHHHHHHHhh-cCCCceEEEcCCCchHHHHHHHHHHHHhhc--------CCCCeEEE
Q 001731 287 LSGPRSTYMLPGKIGNMLFPHQREGLRWLWSLH-CQGKGGILGDDMGLGKTMQICGFLAGLFHS--------RLIKRALV 357 (1019)
Q Consensus 287 ~~~~~~~~~lp~~i~~~L~phQ~egV~~L~~~~-~~~~GgILaDemGLGKTlqaIali~~l~~~--------~~~~~~LI 357 (1019)
.+++..-+.-|..+...|.|||+.|+.||.-.. ..+.||||||+||+|||+++|+++..-... ....++||
T Consensus 309 ~P~et~lte~P~g~~v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLI 388 (901)
T KOG4439|consen 309 IPGETDLTETPDGLKVELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLI 388 (901)
T ss_pred CCCcccccCCCCcceeecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEE
Confidence 344444556688888999999999999996554 456899999999999999999998765431 11236999
Q ss_pred EeCcccHHHHHHHHHHhcCC--CcEEEEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCC
Q 001731 358 VAPKTLLSHWIKELTAVGLS--AKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAI 435 (1019)
Q Consensus 358 VvP~sLl~qW~~E~~k~~~~--~~v~~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~ 435 (1019)
|||++|+.||..|+.+-.-. ..|+.|+|... + ..-.+.+..||||||||..+.+....... .......+..+.
T Consensus 389 I~PaSli~qW~~Ev~~rl~~n~LsV~~~HG~n~--r-~i~~~~L~~YDvViTTY~lva~~~~~e~~--~~~~~spL~~I~ 463 (901)
T KOG4439|consen 389 ICPASLIHQWEAEVARRLEQNALSVYLYHGPNK--R-EISAKELRKYDVVITTYNLVANKPDDELE--EGKNSSPLARIA 463 (901)
T ss_pred eCcHHHHHHHHHHHHHHHhhcceEEEEecCCcc--c-cCCHHHHhhcceEEEeeeccccCCchhhh--cccCccHHHHhh
Confidence 99999999999999875433 45677777764 1 12234567899999999999873221111 111223345678
Q ss_pred ccEEEEcCCcccCCcchHHhHHhhcCCcccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcch
Q 001731 436 WDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHA 515 (1019)
Q Consensus 436 wd~VIlDEAH~iKN~~s~~~kal~~l~~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a 515 (1019)
|.+|||||||.|||+.++.+.+++.|.+..|||||||||||++-|+|+|+.|++..+|++...|+++...+-..+
T Consensus 464 W~RVILDEAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~Wke~i~~~s~~g----- 538 (901)
T KOG4439|consen 464 WSRVILDEAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQWKENIDNMSKGG----- 538 (901)
T ss_pred HHHhhhhhhhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchHHHHHHhccCccccc-----
Confidence 999999999999999999999999999999999999999999999999999999999999999998886543222
Q ss_pred hhHHHHhhHHHHHHHHHHhHHHHHHhhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhHHHh--h----
Q 001731 516 LDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVL--S---- 589 (1019)
Q Consensus 516 ~~~e~~~~~~~~~~L~~~i~p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~--~---- 589 (1019)
..+|.-++++.||||||.......+ ...||.++..++.+.|+..+...|.-+....... .
T Consensus 539 -----------~~rlnll~K~LmLRRTKdQl~a~~k---lv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~ 604 (901)
T KOG4439|consen 539 -----------ANRLNLLTKSLMLRRTKDQLQANGK---LVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQ 604 (901)
T ss_pred -----------hhhhhhhhhhHHhhhhHHhhccccc---cccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHh
Confidence 2346667899999999998866433 4469999999999999999999998775432110 0
Q ss_pred --------hcC--------------------------------CChHHHHHHHHHHhcChhhhhhhhhhhhhhhccCCCC
Q 001731 590 --------AFD--------------------------------GSPLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLN 629 (1019)
Q Consensus 590 --------~~~--------------------------------~~~l~~l~~Lrkic~hP~ll~~~~~~~~~~~~~~~~~ 629 (1019)
.+. +.+|..|.+|||+|+||.++.................
T Consensus 605 ~e~~~~~~~~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~~~g~~~s 684 (901)
T KOG4439|consen 605 REDRNNDGGYQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEFQMNGGDDS 684 (901)
T ss_pred hhhhccccCccccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHhhhcCcchh
Confidence 000 0137788999999999976654333222222222222
Q ss_pred hhHHHHHHHHHHHHhhhhhh----h----------hhhhhccchhhhHHHHHHHHHhh-ccCCCceeEecccHHHHHHHH
Q 001731 630 PEDAALAEKLAMHIADVAEK----D----------DFQEQHDNISCKISFILSLLDKL-IPEGHNVLIFSQTRKMLNLIQ 694 (1019)
Q Consensus 630 ~e~~~~~~~l~~~~~~~~~~----~----------~~~~~~~~~S~Kl~~L~~LL~~~-~~~g~KvLIFsq~~~~ldiL~ 694 (1019)
.++......+.+ +...... + .-.-.....|+|+..+++.++.+ ....+|++|.|||+.+|+++.
T Consensus 685 de~~~e~~~l~e-l~k~~~T~~~~D~~ed~p~~~~~q~Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~ 763 (901)
T KOG4439|consen 685 DEEQLEEDNLAE-LEKNDETDCSDDNCEDLPTAFPDQAFEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVR 763 (901)
T ss_pred hhhhhhhhHHHh-hhhcccccccccccccccccchhhhcccccchhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHH
Confidence 222111111111 0000000 0 00011234699999999999988 557899999999999999999
Q ss_pred HHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCC-ccEEEEecCCcccccCcccCCEEEEcCCCCCchhhhhhhhhhhhh
Q 001731 695 ESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDV-APIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRI 773 (1019)
Q Consensus 695 ~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~-~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QaiGRa~Ri 773 (1019)
..|...|+.|..++|....++|+.+|+.||.... .+|+|+|.-+||+||||++|||+|++|.+|||+.+.||.+|+||+
T Consensus 764 ~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~ 843 (901)
T KOG4439|consen 764 KHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRM 843 (901)
T ss_pred HHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999997665 889999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEEeeCCCHHHHHHHHHHHHHhHHHHHhcccc--ccccCCHHHHHHHHcC
Q 001731 774 GQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKE--QIRYFSQQDLRELLSL 829 (1019)
Q Consensus 774 GQ~k~V~VyrLit~gTiEEkI~~rq~~K~~l~~~~~~~~~--~~~~fs~~dL~eLf~~ 829 (1019)
||+++|+||||++.||+|++|...|..|..+...++.+.. ..+.++..+|+-||++
T Consensus 844 GQkK~V~IhR~~~~gTvEqrV~~LQdkKldlA~~VL~G~~tr~~~kLT~adlk~LFgl 901 (901)
T KOG4439|consen 844 GQKKDVFIHRLMCKGTVEQRVKSLQDKKLDLAKGVLTGSATRKMNKLTLADLKKLFGL 901 (901)
T ss_pred cccCceEEEEEEecCcHHHHHHHHHHHHHHHHhhhccCccccccccccHHHHHHHhCC
Confidence 9999999999999999999999999999999999998654 4788999999999974
No 14
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=4.1e-69 Score=609.39 Aligned_cols=531 Identities=31% Similarity=0.486 Sum_probs=428.2
Q ss_pred CccccCccccCCCchHHHHHHHHHHHh---------hcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcc
Q 001731 292 STYMLPGKIGNMLFPHQREGLRWLWSL---------HCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKT 362 (1019)
Q Consensus 292 ~~~~lp~~i~~~L~phQ~egV~~L~~~---------~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~s 362 (1019)
..+.+.+.+...|+|||.-||+||+.. -..|.|||||+.||||||+|+|+|+..+++...++.+|+|+|-.
T Consensus 243 e~iflapqla~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflRhT~AKtVL~ivPiN 322 (1387)
T KOG1016|consen 243 EDIFLAPQLAHVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLRHTKAKTVLVIVPIN 322 (1387)
T ss_pred cceeehhhhHhhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHhhcCccceEEEEEehH
Confidence 456677889999999999999999853 24578999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHhcCCC-----------cEEEEccccc---chhhHHHHHhhhCCCEEEecHHHHHhccccc---------
Q 001731 363 LLSHWIKELTAVGLSA-----------KIREYFGTCV---KTRQYELQYVLQDKGVLLTTYDIVRNNSKSL--------- 419 (1019)
Q Consensus 363 Ll~qW~~E~~k~~~~~-----------~v~~~~g~~~---~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l--------- 419 (1019)
.+++|..||.+|.|.. .+.+. +... ..+...+..|...++|+++.|++++-.....
T Consensus 323 TlQNWlsEfnmWiP~y~sD~~vrpR~F~vf~L-nD~~KT~~~Rakvi~~Wv~~GGVlLvGYemfRLL~lk~~~~~grpkk 401 (1387)
T KOG1016|consen 323 TLQNWLSEFNMWIPKYFSDTGVRPRSFEVFLL-NDGVKTFDQRAKVIEQWVQTGGVLLVGYEMFRLLILKTLPKKGRPKK 401 (1387)
T ss_pred HHHHHHHHhhhhcCCCcccCCCccceeEEEEe-cCchhhHHHHHHHHHHHhccCCEEEehHHHHHHHHHhcccccCCccc
Confidence 9999999999998862 11111 1111 1233345567788999999999997543220
Q ss_pred --cC--CCcccCcC-------------CCCCCCccEEEEcCCcccCCcchHHhHHhhcCCcccEEEeecCCCCCCHHHHH
Q 001731 420 --RG--SSFISDEA-------------GDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELW 482 (1019)
Q Consensus 420 --~~--~~~~~~~~-------------~~~~~~wd~VIlDEAH~iKN~~s~~~kal~~l~~~~RllLTGTPiqN~l~EL~ 482 (1019)
.. ..++.+.. .+-.-+.|+|||||+|+|||..+.++.+++.|++++||.|||-|+|||+.|+|
T Consensus 402 t~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTGYPLQNNLlEYw 481 (1387)
T KOG1016|consen 402 TLKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTGYPLQNNLLEYW 481 (1387)
T ss_pred cccccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEeccccccchHHHh
Confidence 00 00111110 01133579999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHHHHhHHHHHHhhhhcccccCccccccccCccc
Q 001731 483 ALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKN 562 (1019)
Q Consensus 483 sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~~L~~~i~p~~lRR~k~dv~~~~~~~~~~~LP~k~ 562 (1019)
++++|++|..||++.+|.+.|++||..|++.+.+.....+.......|+.++..|+-||+..-+ ...||.+.
T Consensus 482 CMVDFVRP~yLGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvL--------k~~LP~k~ 553 (1387)
T KOG1016|consen 482 CMVDFVRPKYLGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVL--------KKILPEKK 553 (1387)
T ss_pred hhheeccccccchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhH--------hhhccccc
Confidence 9999999999999999999999999999999999999999999999999999999999988765 55799999
Q ss_pred eEEEEEcCCHHHHHHHHHHHhh-HHHh--hhc-CCChHHHHHHHHHHhcChhhhhhhhhhhhh-------------hhcc
Q 001731 563 EMIVWLRLTSCQRQLYEAFLNS-EIVL--SAF-DGSPLAALTILKKICDHPLLLTKRAAEDVL-------------DGMD 625 (1019)
Q Consensus 563 e~vv~~~ls~~Q~~lY~~~l~~-~~~~--~~~-~~~~l~~l~~Lrkic~hP~ll~~~~~~~~~-------------~~~~ 625 (1019)
++++.+++|..||++|+.|+.. .... ... .-++|.++..+.||+|||+.+......... .+..
T Consensus 554 EyViLvr~s~iQR~LY~~Fm~d~~r~~~~~~~~~~NPLkAF~vCcKIWNHPDVLY~~l~k~~~a~e~dl~vee~~~ag~~ 633 (1387)
T KOG1016|consen 554 EYVILVRKSQIQRQLYRNFMLDAKREIAANNDAVFNPLKAFSVCCKIWNHPDVLYRLLEKKKRAEEDDLRVEEMKFAGLQ 633 (1387)
T ss_pred ceEEEEeHHHHHHHHHHHHHHHHHHhhccccccccChHHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhhHHHHhhhccc
Confidence 9999999999999999999832 2211 111 236899999999999999987643221100 0000
Q ss_pred C-------CCChhHHHHHHHHHHHHhhh---------------------------hhhhhhhhhccchhhhHHHHHHHHH
Q 001731 626 S-------MLNPEDAALAEKLAMHIADV---------------------------AEKDDFQEQHDNISCKISFILSLLD 671 (1019)
Q Consensus 626 ~-------~~~~e~~~~~~~l~~~~~~~---------------------------~~~~~~~~~~~~~S~Kl~~L~~LL~ 671 (1019)
. ....+....+..+....... .....++......++|+..+++++.
T Consensus 634 ~~~~P~~~~~~~~s~~laSs~~k~~n~t~kp~~s~~~p~f~ee~~e~~~y~~w~~el~~nYq~gvLen~pk~V~~~~~~d 713 (1387)
T KOG1016|consen 634 QQQSPFNSIPSNPSTPLASSTSKSANKTKKPRGSKKAPKFDEEDEEVEKYSDWTFELFENYQEGVLENGPKIVISLEILD 713 (1387)
T ss_pred ccCCCCCCCCCCCCCcccchhhhhhcccCCcccCcCCCCcccccccccchhhHHHHHHhhhhcccccCCCceEEEEeeec
Confidence 0 00001111111111111000 0011223333345788888888888
Q ss_pred hhccCCCceeEecccHHHHHHHHHHHhhc------------------CCeEEEEECCCCHHHHHHHHHhhhcCCCcc-EE
Q 001731 672 KLIPEGHNVLIFSQTRKMLNLIQESIGSK------------------GYKFLRIDGTTKASDRVKIVNDFQEGDVAP-IF 732 (1019)
Q Consensus 672 ~~~~~g~KvLIFsq~~~~ldiL~~~L~~~------------------gi~~~ridG~~s~~eR~~ii~~F~~~~~~~-V~ 732 (1019)
+-..-|.|+|||||....|++|+.+|..+ +..|.+++|.++..+|.++|++||...+.. .|
T Consensus 714 es~~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlf 793 (1387)
T KOG1016|consen 714 ESTQIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLF 793 (1387)
T ss_pred cccccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeee
Confidence 88888999999999999999999999764 246899999999999999999999887655 89
Q ss_pred EEecCCcccccCcccCCEEEEcCCCCCchhhhhhhhhhhhhCCCCcEEEEEEeeCCCHHHHHHHHHHHHHhHHHHHhccc
Q 001731 733 LLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHK 812 (1019)
Q Consensus 733 LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QaiGRa~RiGQ~k~V~VyrLit~gTiEEkI~~rq~~K~~l~~~~~~~~ 812 (1019)
|+||++|..|+||.+|+++|+||..|||..+.||++|++|+||+|+|+||||++..++|.+||.||+.|++|...++++-
T Consensus 794 llstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIydRQIsKqGmsdRvVDd~ 873 (1387)
T KOG1016|consen 794 LLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYDRQISKQGMSDRVVDDA 873 (1387)
T ss_pred eehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHHHHHhhccchhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCHHHHHHHHcCCC
Q 001731 813 EQIRYFSQQDLRELLSLPK 831 (1019)
Q Consensus 813 ~~~~~fs~~dL~eLf~~~~ 831 (1019)
++.-.||+.||..|+-+.+
T Consensus 874 np~an~s~Ke~enLl~~~e 892 (1387)
T KOG1016|consen 874 NPDANISQKELENLLMYDE 892 (1387)
T ss_pred CccccccHHHHHHHhhhhh
Confidence 9999999999999996653
No 15
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=2.7e-62 Score=623.66 Aligned_cols=492 Identities=37% Similarity=0.584 Sum_probs=410.2
Q ss_pred ccccCCCchHHHHHHHHHH-HhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCC--CCeEEEEeCcccHHHHHHHHHHh
Q 001731 298 GKIGNMLFPHQREGLRWLW-SLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRL--IKRALVVAPKTLLSHWIKELTAV 374 (1019)
Q Consensus 298 ~~i~~~L~phQ~egV~~L~-~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~--~~~~LIVvP~sLl~qW~~E~~k~ 374 (1019)
..+...|+|||.+|++|+. .+...+.||||||+||+|||+|+|+++.+.+.... .+++|||||.+++.+|..|+.+|
T Consensus 333 ~~~~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~~~nw~~e~~k~ 412 (866)
T COG0553 333 VDLSAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLSNWKREFEKF 412 (866)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecHHHHHHHHHHHhhh
Confidence 5667789999999999999 78888999999999999999999999988655544 47999999999999999999999
Q ss_pred cCCCc-EEEEcccccc--hhhHHHHHhhhC-----CCEEEecHHHHHh---ccccccCCCcccCcCCCCCCCccEEEEcC
Q 001731 375 GLSAK-IREYFGTCVK--TRQYELQYVLQD-----KGVLLTTYDIVRN---NSKSLRGSSFISDEAGDDDAIWDYMILDE 443 (1019)
Q Consensus 375 ~~~~~-v~~~~g~~~~--~~~~~~~~~~~~-----~dVvItTy~~l~~---~~~~l~~~~~~~~~~~~~~~~wd~VIlDE 443 (1019)
.|... +..++|.... .+...+...... ++++++||+.++. .... +....|+++|+||
T Consensus 413 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~------------l~~~~~~~~v~DE 480 (866)
T COG0553 413 APDLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGG------------LKKIEWDRVVLDE 480 (866)
T ss_pred CccccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHH------------Hhhceeeeeehhh
Confidence 99999 8888887642 112223333332 7999999999998 3333 3467899999999
Q ss_pred CcccCCcchHHhHHhhcCCcccEEEeecCCCCCCHHHHHHHHH-hhcCCCCC-ChHHHHHHhhcccccCCCcchhhHHHH
Q 001731 444 GHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFN-FCCPELLG-DNKWFKEKYELPILRGNDKHALDREKR 521 (1019)
Q Consensus 444 AH~iKN~~s~~~kal~~l~~~~RllLTGTPiqN~l~EL~sll~-fl~p~~lg-~~~~F~~~f~~pi~~~~~~~a~~~e~~ 521 (1019)
||+|||..+..++++..+++.+|++|||||++|++.|||++++ |+.|+.++ +...|..+|..|+........ ..
T Consensus 481 a~~ikn~~s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~----~~ 556 (866)
T COG0553 481 AHRIKNDQSSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGP----LE 556 (866)
T ss_pred HHHHhhhhhHHHHHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccc----hh
Confidence 9999999999999999999999999999999999999999999 99999999 558999999999887776543 12
Q ss_pred hhHHHHHHHHHHhHHHHHHhhhhc--ccccCccccccccCccceEEEEEcCCHHHHHHHHHHHh---hHH--Hhh---hc
Q 001731 522 IGSAVAKELRERIQPYFLRRLKNE--VFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLN---SEI--VLS---AF 591 (1019)
Q Consensus 522 ~~~~~~~~L~~~i~p~~lRR~k~d--v~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~---~~~--~~~---~~ 591 (1019)
........|+..++||++||++.+ + ...||++.+.+++|.+++.|+.+|..++. ... +.. ..
T Consensus 557 ~~~~~~~~l~~~i~~f~lrr~k~~~~v--------~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~ 628 (866)
T COG0553 557 ARELGIELLRKLLSPFILRRTKEDVEV--------LKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKAD 628 (866)
T ss_pred hHHHHHHHHHHHHHHHhhcccccchhH--------HHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 223344558999999999999999 5 34699999999999999999999999988 321 111 11
Q ss_pred ---------CCChHHHHHHHHHHhcChhhhhhhhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchh-h
Q 001731 592 ---------DGSPLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNIS-C 661 (1019)
Q Consensus 592 ---------~~~~l~~l~~Lrkic~hP~ll~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S-~ 661 (1019)
....+..++.||++|+||.++..... ............. .............| +
T Consensus 629 ~~~~~~~~~~~~~l~~~~~lr~~~~~p~l~~~~~~--------~~~~~~~~~~~~~--------~~~~~~~~~~~~~s~~ 692 (866)
T COG0553 629 SDENRIGDSELNILALLTRLRQICNHPALVDEGLE--------ATFDRIVLLLRED--------KDFDYLKKPLIQLSKG 692 (866)
T ss_pred cccccccchhhHHHHHHHHHHHhccCccccccccc--------cccchhhhhhhcc--------cccccccchhhhccch
Confidence 33578889999999999998875410 0000000000000 00111112223356 8
Q ss_pred hHHHHHHHH-HhhccCCC--ceeEecccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCC
Q 001731 662 KISFILSLL-DKLIPEGH--NVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQV 738 (1019)
Q Consensus 662 Kl~~L~~LL-~~~~~~g~--KvLIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~a 738 (1019)
|+..+.++| ..+...|+ |+|||+|++.++++|...|...++.+++++|+++...|+.+++.|++++...||++++++
T Consensus 693 k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~ka 772 (866)
T COG0553 693 KLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKA 772 (866)
T ss_pred HHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecc
Confidence 999999999 78888999 999999999999999999999999999999999999999999999999888999999999
Q ss_pred cccccCcccCCEEEEcCCCCCchhhhhhhhhhhhhCCCCcEEEEEEeeCCCHHHHHHHHHHHHHhHHHHHhcc--ccccc
Q 001731 739 GGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEH--KEQIR 816 (1019)
Q Consensus 739 gg~GLNLt~A~~VIi~D~~WNp~~~~QaiGRa~RiGQ~k~V~VyrLit~gTiEEkI~~rq~~K~~l~~~~~~~--~~~~~ 816 (1019)
||.||||+.|++||+|||+|||+.+.||++|+||+||+++|.||++++.+|+||+|+.+|..|..+...+++. .....
T Consensus 773 gg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe~i~~~~~~K~~l~~~~~~~~~~~~~~ 852 (866)
T COG0553 773 GGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGTIEEKILELQEKKQELLDSLIDAEGEKELS 852 (866)
T ss_pred cccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCcHHHHHHHHHHHHHHHHHHHhhhhcccchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999885 45567
Q ss_pred cCCHHHHHHHHcC
Q 001731 817 YFSQQDLRELLSL 829 (1019)
Q Consensus 817 ~fs~~dL~eLf~~ 829 (1019)
.++.+++..||..
T Consensus 853 ~~~~~~~~~l~~~ 865 (866)
T COG0553 853 KLSIEDLLDLFSL 865 (866)
T ss_pred hccHHHHHHHhcc
Confidence 7889999999864
No 16
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=3.3e-55 Score=480.94 Aligned_cols=432 Identities=24% Similarity=0.315 Sum_probs=339.5
Q ss_pred ccCccccCCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHHHHHHHHHHh
Q 001731 295 MLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAV 374 (1019)
Q Consensus 295 ~lp~~i~~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~qW~~E~~k~ 374 (1019)
.+|+.+...|+|||++||.|.++ +|+.+||||+||||||+|||+++.++.. .+|.|||||+++...|.+++.+|
T Consensus 190 v~d~kLvs~LlPFQreGv~faL~---RgGR~llADeMGLGKTiQAlaIA~yyra---EwplliVcPAsvrftWa~al~r~ 263 (689)
T KOG1000|consen 190 VMDPKLVSRLLPFQREGVIFALE---RGGRILLADEMGLGKTIQALAIARYYRA---EWPLLIVCPASVRFTWAKALNRF 263 (689)
T ss_pred ccCHHHHHhhCchhhhhHHHHHh---cCCeEEEecccccchHHHHHHHHHHHhh---cCcEEEEecHHHhHHHHHHHHHh
Confidence 46889999999999999999988 5778899999999999999998776643 36899999999999999999999
Q ss_pred cCCCcE-EEEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcchH
Q 001731 375 GLSAKI-REYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQ 453 (1019)
Q Consensus 375 ~~~~~v-~~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s~ 453 (1019)
.|.... .+..+.... +..+-....|.|++|+++......+. ...|.+||+||+|.+|+..++
T Consensus 264 lps~~pi~vv~~~~D~-----~~~~~t~~~v~ivSye~ls~l~~~l~------------~~~~~vvI~DEsH~Lk~sktk 326 (689)
T KOG1000|consen 264 LPSIHPIFVVDKSSDP-----LPDVCTSNTVAIVSYEQLSLLHDILK------------KEKYRVVIFDESHMLKDSKTK 326 (689)
T ss_pred cccccceEEEecccCC-----ccccccCCeEEEEEHHHHHHHHHHHh------------cccceEEEEechhhhhccchh
Confidence 987653 333332221 11122235699999999988766554 445999999999999999999
Q ss_pred HhHHhhcC--CcccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHH
Q 001731 454 RAKSLLEI--PSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELR 531 (1019)
Q Consensus 454 ~~kal~~l--~~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~~L~ 531 (1019)
+.+++.-+ .+.|.|+|||||.-.++.|||.++..+.+.++....+|-..|+.--..+...+ ..+..++.+|+
T Consensus 327 r~Ka~~dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~D------ykg~tnl~EL~ 400 (689)
T KOG1000|consen 327 RTKAATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFD------YKGCTNLEELA 400 (689)
T ss_pred hhhhhhhHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeee------cCCCCCHHHHH
Confidence 99988876 67899999999999999999999999999999999999999986533332211 22344567788
Q ss_pred HHhH-HHHHHhhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcChh
Q 001731 532 ERIQ-PYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPL 610 (1019)
Q Consensus 532 ~~i~-p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~ 610 (1019)
.++. ..|+||+|.+|+. .||+|...++++- ...+-..-..+.......... .. +.- +|-.
T Consensus 401 ~lL~k~lMIRRlK~dvL~--------qLPpKrr~Vv~~~-~gr~da~~~~lv~~a~~~t~~-----~~-~e~----~~~~ 461 (689)
T KOG1000|consen 401 ALLFKRLMIRRLKADVLK--------QLPPKRREVVYVS-GGRIDARMDDLVKAAADYTKV-----NS-MER----KHES 461 (689)
T ss_pred HHHHHHHHHHHHHHHHHh--------hCCccceEEEEEc-CCccchHHHHHHHHhhhcchh-----hh-hhh----hhHH
Confidence 7774 4689999999965 5999966655543 333322222222211100000 00 000 0000
Q ss_pred hhhhhhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHh----hccCCCceeEeccc
Q 001731 611 LLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDK----LIPEGHNVLIFSQT 686 (1019)
Q Consensus 611 ll~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~----~~~~g~KvLIFsq~ 686 (1019)
++ ..+ ....-.|+..+.+.|.. ..+.+.|++||+++
T Consensus 462 l~----------------------------l~y------------~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH 501 (689)
T KOG1000|consen 462 LL----------------------------LFY------------SLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHH 501 (689)
T ss_pred HH----------------------------HHH------------HHhcccccHHHHHHHHhCcccccCCCceEEEEehh
Confidence 00 000 00123477777777766 44578999999999
Q ss_pred HHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCCCCCchhhhhh
Q 001731 687 RKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQS 766 (1019)
Q Consensus 687 ~~~ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~Qa 766 (1019)
..+++-|+.++..+++.+.||||+++...|+.+++.|+.++...|-++|..|+|+||+|++|+.|++.+.+|||....||
T Consensus 502 ~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQA 581 (689)
T KOG1000|consen 502 QIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQA 581 (689)
T ss_pred HHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhCCCCcEEEEEEeeCCCHHHHHHHHHHHHHhHHHHHhccccc
Q 001731 767 VDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQ 814 (1019)
Q Consensus 767 iGRa~RiGQ~k~V~VyrLit~gTiEEkI~~rq~~K~~l~~~~~~~~~~ 814 (1019)
.+|+||+||+..|.||+|+++||+||.+|.....|...+..+..++.+
T Consensus 582 EDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~vl~s~gl~s~~ 629 (689)
T KOG1000|consen 582 EDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDVLGSVGLSSDT 629 (689)
T ss_pred hhhhhhccccceeeEEEEEecCchHHHHHHHHHHHHHHHhhcccCccc
Confidence 999999999999999999999999999999999999988877655544
No 17
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=1.5e-54 Score=536.10 Aligned_cols=441 Identities=18% Similarity=0.264 Sum_probs=318.6
Q ss_pred ccCCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHHHHHHHHHHhcCCCc
Q 001731 300 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVGLSAK 379 (1019)
Q Consensus 300 i~~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~qW~~E~~k~~~~~~ 379 (1019)
....|+|||..++.++... ...++||||+||||||++|++++..+...+..+|+|||||++|+.||..|+.+++. ..
T Consensus 149 ~~~~l~pHQl~~~~~vl~~--~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~sL~~QW~~El~~kF~-l~ 225 (956)
T PRK04914 149 ARASLIPHQLYIAHEVGRR--HAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPETLQHQWLVEMLRRFN-LR 225 (956)
T ss_pred CCCCCCHHHHHHHHHHhhc--cCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCHHHHHHHHHHHHHHhC-CC
Confidence 4456999999999877553 35688999999999999999999998888888999999999999999999976442 22
Q ss_pred EEEEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCc---chHHhH
Q 001731 380 IREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNP---STQRAK 456 (1019)
Q Consensus 380 v~~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~---~s~~~k 456 (1019)
..++.+.............+..++++|+||+.++.+...... +....|++|||||||+++|. .|+.++
T Consensus 226 ~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~---------l~~~~wdlvIvDEAH~lk~~~~~~s~~y~ 296 (956)
T PRK04914 226 FSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQ---------ALAAEWDLLVVDEAHHLVWSEEAPSREYQ 296 (956)
T ss_pred eEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHH---------HhhcCCCEEEEechhhhccCCCCcCHHHH
Confidence 333332211100000001223578999999999875432111 12457999999999999953 466788
Q ss_pred HhhcC--CcccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhc--cc-------ccCCCcchhhHH---HHh
Q 001731 457 SLLEI--PSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYEL--PI-------LRGNDKHALDRE---KRI 522 (1019)
Q Consensus 457 al~~l--~~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~--pi-------~~~~~~~a~~~e---~~~ 522 (1019)
++..+ +++++++|||||+||++.|+|++++|++|+.|++...|....+. |+ ..+......... ...
T Consensus 297 ~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll 376 (956)
T PRK04914 297 VVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELL 376 (956)
T ss_pred HHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHh
Confidence 88777 57899999999999999999999999999999999999875543 22 111110000000 000
Q ss_pred ----------------------hHHHHHHHHHH--hHHHHHHhhhhcccccCccccccccCccceEEEEEcCCHHHHHHH
Q 001731 523 ----------------------GSAVAKELRER--IQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLY 578 (1019)
Q Consensus 523 ----------------------~~~~~~~L~~~--i~p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY 578 (1019)
....+..|... ..++|+|+++.+|. .+|......+.+++.+. |
T Consensus 377 ~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~---------~fp~R~~~~~~l~~~~~----y 443 (956)
T PRK04914 377 GEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVK---------GFPKRELHPIPLPLPEQ----Y 443 (956)
T ss_pred cccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhc---------CCCcCceeEeecCCCHH----H
Confidence 00011111111 12456677777653 37788888888888654 3
Q ss_pred HHHHhhHHHhhhcCCChHHHHHHHHHHhcChhhhhhhhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccc
Q 001731 579 EAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDN 658 (1019)
Q Consensus 579 ~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~ll~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~ 658 (1019)
........ ...+++ +.+|..+... +. .......
T Consensus 444 ~~~~~~~~------------~~~~~~-~l~pe~~~~~---------------------------~~-------~~~~~~~ 476 (956)
T PRK04914 444 QTAIKVSL------------EARARD-MLYPEQIYQE---------------------------FE-------DNATWWN 476 (956)
T ss_pred HHHHHHhH------------HHHHHh-hcCHHHHHHH---------------------------Hh-------hhhhccc
Confidence 33221100 011111 2233211100 00 0011233
Q ss_pred hhhhHHHHHHHHHhhccCCCceeEecccHHHHHHHHHHH-hhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecC
Q 001731 659 ISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESI-GSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQ 737 (1019)
Q Consensus 659 ~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~~~L-~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~ 737 (1019)
.++|+..|.++|+.. .+.|+||||+++.+++.|...| ...|++++.|||+++..+|.++++.|++++....+||+|.
T Consensus 477 ~d~Ki~~L~~~L~~~--~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTd 554 (956)
T PRK04914 477 FDPRVEWLIDFLKSH--RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSE 554 (956)
T ss_pred cCHHHHHHHHHHHhc--CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEech
Confidence 578999999999876 3789999999999999999999 5679999999999999999999999998653334678889
Q ss_pred CcccccCcccCCEEEEcCCCCCchhhhhhhhhhhhhCCCCcEEEEEEeeCCCHHHHHHHHHHHHHhHHHHHhccccc
Q 001731 738 VGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQ 814 (1019)
Q Consensus 738 agg~GLNLt~A~~VIi~D~~WNp~~~~QaiGRa~RiGQ~k~V~VyrLit~gTiEEkI~~rq~~K~~l~~~~~~~~~~ 814 (1019)
+||+|+||+.|++||+||+||||..++||+||+||+||+++|.||.++..+|++++|++....|.+++...+.....
T Consensus 555 vgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ife~~~~~~~~ 631 (956)
T PRK04914 555 IGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLNAFEHTCPTGRA 631 (956)
T ss_pred hhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhcCceeccCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888877655443
No 18
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=6.4e-52 Score=495.93 Aligned_cols=471 Identities=31% Similarity=0.392 Sum_probs=364.4
Q ss_pred hHHHHHHHHHHHh-hcCCCceEEEcCCCchHHHHHHHHHHHHhhcC-------CCCeEEEEeCcccHHHHHHHHHHhcCC
Q 001731 306 PHQREGLRWLWSL-HCQGKGGILGDDMGLGKTMQICGFLAGLFHSR-------LIKRALVVAPKTLLSHWIKELTAVGLS 377 (1019)
Q Consensus 306 phQ~egV~~L~~~-~~~~~GgILaDemGLGKTlqaIali~~l~~~~-------~~~~~LIVvP~sLl~qW~~E~~k~~~~ 377 (1019)
.+|..+-.|+... ...-.|||++|+||+|||+++|+++....... ..+.+|||||.+++.||..|+.+....
T Consensus 135 ~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~~~qW~~elek~~~~ 214 (674)
T KOG1001|consen 135 LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSLLTQWKTELEKVTEE 214 (674)
T ss_pred HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHHHHHHHHHHhccCCc
Confidence 4555444444333 23348999999999999999999887654332 356899999999999999999666554
Q ss_pred Cc--EEEEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcchHHh
Q 001731 378 AK--IREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRA 455 (1019)
Q Consensus 378 ~~--v~~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s~~~ 455 (1019)
.+ +.+|+| .. ........++||||||+++... .+..+.|.+||+||||.++|.+++.+
T Consensus 215 ~~l~v~v~~g-r~-----kd~~el~~~dVVltTy~il~~~--------------~l~~i~w~Riildea~~ikn~~tq~~ 274 (674)
T KOG1001|consen 215 DKLSIYVYHG-RT-----KDKSELNSYDVVLTTYDILKNS--------------PLVKIKWLRIVLDEAHTIKNKDTQIF 274 (674)
T ss_pred cceEEEEecc-cc-----cccchhcCCceEEeeHHHhhcc--------------cccceeEEEEEeccccccCCcchHhh
Confidence 44 455566 11 1122346789999999999851 12357799999999999999999999
Q ss_pred HHhhcCCcccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHHHHhH
Q 001731 456 KSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQ 535 (1019)
Q Consensus 456 kal~~l~~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~~L~~~i~ 535 (1019)
+++..+.+.+||+|||||+||++.|+|+++.|+.-.++.....|...+..|+..+.+ ......++..++
T Consensus 275 ~a~~~L~a~~RWcLtgtPiqn~~~~lysl~~fl~~~p~~~~~~~~~~i~~p~~~~~~-----------~~~~k~l~~~L~ 343 (674)
T KOG1001|consen 275 KAVCQLDAKYRWCLTGTPIQNNLDELYSLFKFLEIHPYCDQNYFKLLIQDPDERNKY-----------KEGVKTLQGILK 343 (674)
T ss_pred hhheeeccceeeeecCChhhhhHHHHHHHHHHhhcCCchhhHHHHHHhcChhhhhhH-----------HHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999877664 234567888999
Q ss_pred HHHHHhhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhHHHhhh----------cCCChHHHHHHHHHH
Q 001731 536 PYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSA----------FDGSPLAALTILKKI 605 (1019)
Q Consensus 536 p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~----------~~~~~l~~l~~Lrki 605 (1019)
++++||+|..-.... ....||++...++++.++..++.+|..+.......-. .....+..+.+||++
T Consensus 344 ~v~lrrtK~~~~~gk---~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~~~~~~~~~~~~~~Y~~~l~~lLrlrq~ 420 (674)
T KOG1001|consen 344 KVMLRRTKEMEVDGK---PILELPPKTVFVTEVDLSKSERSAYKALKANSRNQFSNYANEGTVSSTYAFFLKNLLRLRQA 420 (674)
T ss_pred HHHhcccccccccCc---cccccCcceeEeeeccccHhHHHHHHHHhhhhhhHHHHHhhhchhhhhHHHHHHHHHHHHHH
Confidence 999999998665422 2557999999999999999999999998765332111 112356778899999
Q ss_pred hcChhhhhhhhhhhhhhh------------c------cCCCChhHH--------HHHHHHHHHH----------------
Q 001731 606 CDHPLLLTKRAAEDVLDG------------M------DSMLNPEDA--------ALAEKLAMHI---------------- 643 (1019)
Q Consensus 606 c~hP~ll~~~~~~~~~~~------------~------~~~~~~e~~--------~~~~~l~~~~---------------- 643 (1019)
|+||.++..........+ + ......+.. ...+-+...+
T Consensus 421 c~h~~lv~~~~~~~~~~~~~~~~~~~~i~~l~~~~~c~ic~~~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 421 CDHSLLVMYEMDSLGDSGSAAALIIRLIVDLSVSHWCHICCDLDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred ccchHhhhhhhhccccccccchHHHHHHHHHhhccccccccccccceeecccchHHHHHHHhccccccCCCCcHHHHHHH
Confidence 999998764322111000 0 000000000 0000000000
Q ss_pred -hhhhh----hhhhhhhccchhhhHHHHHHHHHhhccCCC-ceeEecccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHH
Q 001731 644 -ADVAE----KDDFQEQHDNISCKISFILSLLDKLIPEGH-NVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRV 717 (1019)
Q Consensus 644 -~~~~~----~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~-KvLIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eR~ 717 (1019)
..... ...... ....|.|+..++.+|........ ++|||||++.+++++...|...++.+.+++|.++...|.
T Consensus 501 ~~~l~s~~~~~~~~~~-~~~~s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~ 579 (674)
T KOG1001|consen 501 EKKLLSANPLPSIIND-LLPESSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRT 579 (674)
T ss_pred HHHHhhcccccchhhh-ccchhhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHH
Confidence 00000 000000 11157788888888885544444 999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCCCCCchhhhhhhhhhhhhCCCCcEEEEEEeeCCCHHHHHHHH
Q 001731 718 KIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRK 797 (1019)
Q Consensus 718 ~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QaiGRa~RiGQ~k~V~VyrLit~gTiEEkI~~r 797 (1019)
+.+..|..++...|+++|.+|||.||||+.|++||++||+|||+.+.||++|+||+||+++|.|+|+++.+|+||+|.+.
T Consensus 580 ~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i~dtveer~l~i 659 (674)
T KOG1001|consen 580 KSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFIIKDTVEERILKI 659 (674)
T ss_pred hhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeeeeeehhhhccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHhcc
Q 001731 798 QIFKGGLFKTATEH 811 (1019)
Q Consensus 798 q~~K~~l~~~~~~~ 811 (1019)
|..|..+.+.+.+.
T Consensus 660 q~~K~~~~~~a~~~ 673 (674)
T KOG1001|consen 660 QEKKREYNASAFGE 673 (674)
T ss_pred HHHHHHHHhhhccC
Confidence 99999998887653
No 19
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=100.00 E-value=8e-44 Score=419.89 Aligned_cols=378 Identities=33% Similarity=0.509 Sum_probs=317.9
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCC-CeEEEEeCcccHHHHHHHHHHhcCCCcE
Q 001731 302 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLI-KRALVVAPKTLLSHWIKELTAVGLSAKI 380 (1019)
Q Consensus 302 ~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~-~~~LIVvP~sLl~qW~~E~~k~~~~~~v 380 (1019)
..|.|||.+|++|+...+..+..+||||+||+|||+|++.|+..++..... +|.|+++|.+.+.+|..++..|.|...+
T Consensus 294 g~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~~~~~~~P~Lv~ap~sT~~nwe~e~~~wap~~~v 373 (696)
T KOG0383|consen 294 GTLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPKEIHSPGPPLVVAPLSTIVNWEREFELWAPSFYV 373 (696)
T ss_pred ccccccchhhhhhhhcccccCCCcccchhhcCCceeeEEEEEeecccccCCCCCceeeccCccccCCCCchhccCCCccc
Confidence 689999999999999999999999999999999999999999988776554 6999999999999999999999999999
Q ss_pred EEEcccccchhhHHH--------------------HHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEE
Q 001731 381 REYFGTCVKTRQYEL--------------------QYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMI 440 (1019)
Q Consensus 381 ~~~~g~~~~~~~~~~--------------------~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VI 440 (1019)
..|.|......-... ....-.+.+.+++|.+.......+ ..+.|.++|
T Consensus 374 v~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~~~~il------------~~v~w~~li 441 (696)
T KOG0383|consen 374 VPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEIDQSIL------------FSVQWGLLI 441 (696)
T ss_pred ccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhcccCHHHH------------hhhhcceeE
Confidence 988886543211000 001124678888998887665544 367799999
Q ss_pred EcCCcccCCcchHHhHHhhcCCcccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHH
Q 001731 441 LDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREK 520 (1019)
Q Consensus 441 lDEAH~iKN~~s~~~kal~~l~~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~ 520 (1019)
+||+|+++|..+.+.+.+...+..++++|||||.||++.+|+++|+|+.|+.+++..+|.+.|..-
T Consensus 442 vde~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~~d~-------------- 507 (696)
T KOG0383|consen 442 VDEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEFHDI-------------- 507 (696)
T ss_pred eechhhcccchhhhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhhcchh--------------
Confidence 999999999999999999999999999999999999999999999999999999999999988642
Q ss_pred HhhHHHHHHHHHHhHHHHHHhhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhHHHhhhcC---CChHH
Q 001731 521 RIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFD---GSPLA 597 (1019)
Q Consensus 521 ~~~~~~~~~L~~~i~p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~---~~~l~ 597 (1019)
....++..|+.++.|+|+||.+.+|+.+ +|.|++.++.+.+++.|+++|+.++.......... -+.+.
T Consensus 508 -~~~~~~~~l~~l~~p~~lrr~k~d~l~~--------~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~~~~~~s~~n 578 (696)
T KOG0383|consen 508 -SCEEQIKKLHLLLCPHMLRRLKLDVLKP--------MPLKTELIGRVELSPCQKKYYKKILTRNWQGLLAGVHQYSLLN 578 (696)
T ss_pred -hHHHHHHhhccccCchhhhhhhhhhccC--------CCccceeEEEEecCHHHHHHHHHHHcCChHHHhhcchhHHHHH
Confidence 2345678899999999999999999763 89999999999999999999999987533221112 23567
Q ss_pred HHHHHHHHhcChhhhhhhhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhccCC
Q 001731 598 ALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEG 677 (1019)
Q Consensus 598 ~l~~Lrkic~hP~ll~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g 677 (1019)
.++.|||.|+||+++..... ...... .......+.|+|+..|..++++++..|
T Consensus 579 ~~mel~K~~~hpy~~~~~e~----------~~~~~~-----------------~~~~~l~k~~~k~~~l~~~~~~l~~~g 631 (696)
T KOG0383|consen 579 IVMELRKQCNHPYLSPLEEP----------LEENGE-----------------YLGSALIKASGKLTLLLKMLKKLKSSG 631 (696)
T ss_pred HHHHHHHhhcCcccCccccc----------cccchH-----------------HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88999999999999875111 000000 011122347999999999999999999
Q ss_pred CceeEecccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhh-cCCCccEEEEecCCcccc
Q 001731 678 HNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQ-EGDVAPIFLLTSQVGGLG 742 (1019)
Q Consensus 678 ~KvLIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~-~~~~~~V~LlST~agg~G 742 (1019)
|||+||+|++.++|+++.++...+ .|.|+||+.+..+|+.++++|| .+...+|||+||++||+|
T Consensus 632 hrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 632 HRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred hhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 999999999999999999999999 9999999999999999999999 466788999999999998
No 20
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1e-38 Score=383.26 Aligned_cols=353 Identities=18% Similarity=0.266 Sum_probs=251.0
Q ss_pred cCCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCccc-HHHHHHHHHHhcC--C
Q 001731 301 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTL-LSHWIKELTAVGL--S 377 (1019)
Q Consensus 301 ~~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sL-l~qW~~E~~k~~~--~ 377 (1019)
...|||||.+++.+++.. ...++|||+++||+|||++++++++.+ .+++|||||.++ +.||.++|.+|+. .
T Consensus 253 ~~~LRpYQ~eAl~~~~~~-gr~r~GIIvLPtGaGKTlvai~aa~~l-----~k~tLILvps~~Lv~QW~~ef~~~~~l~~ 326 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVTAACTV-----KKSCLVLCTSAVSVEQWKQQFKMWSTIDD 326 (732)
T ss_pred CCCcCHHHHHHHHHHHhc-CCCCCcEEEeCCCCChHHHHHHHHHHh-----CCCEEEEeCcHHHHHHHHHHHHHhcCCCC
Confidence 467999999999998751 123589999999999999999888765 368999999864 7999999999963 3
Q ss_pred CcEEEEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcchHHhHH
Q 001731 378 AKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKS 457 (1019)
Q Consensus 378 ~~v~~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s~~~ka 457 (1019)
..+..+.|..... .....+|+|+||+++........... .....+....|++||+||||++.+ ....+.
T Consensus 327 ~~I~~~tg~~k~~-------~~~~~~VvVtTYq~l~~~~~r~~~~~--~~l~~l~~~~~gLII~DEvH~lpA--~~fr~i 395 (732)
T TIGR00603 327 SQICRFTSDAKER-------FHGEAGVVVSTYSMVAHTGKRSYESE--KVMEWLTNREWGLILLDEVHVVPA--AMFRRV 395 (732)
T ss_pred ceEEEEecCcccc-------cccCCcEEEEEHHHhhcccccchhhh--HHHHHhccccCCEEEEEccccccH--HHHHHH
Confidence 4455555432111 12347899999999975432211000 000112345799999999999943 445556
Q ss_pred hhcCCcccEEEeecCCCCCCHHHHHHHHHhh-cCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHHHHhHH
Q 001731 458 LLEIPSAHRIIISGTPIQNNLKELWALFNFC-CPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQP 536 (1019)
Q Consensus 458 l~~l~~~~RllLTGTPiqN~l~EL~sll~fl-~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~~L~~~i~p 536 (1019)
+..+.+.+||+|||||++++ +.+..+.++ .|..+.. . +.+++
T Consensus 396 l~~l~a~~RLGLTATP~ReD--~~~~~L~~LiGP~vye~-~--------------------------------~~eLi-- 438 (732)
T TIGR00603 396 LTIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYEA-N--------------------------------WMELQ-- 438 (732)
T ss_pred HHhcCcCcEEEEeecCcccC--CchhhhhhhcCCeeeec-C--------------------------------HHHHH--
Confidence 77789999999999999876 334444443 3322110 0 00000
Q ss_pred HHHHhhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcChhhhhhhh
Q 001731 537 YFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLTKRA 616 (1019)
Q Consensus 537 ~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~ll~~~~ 616 (1019)
. ...|.+.....|||+|++... ..++..... .+.. +
T Consensus 439 -----------~------~G~LA~~~~~ev~v~~t~~~~---~~yl~~~~~--------------~k~~-----l----- 474 (732)
T TIGR00603 439 -----------K------KGFIANVQCAEVWCPMTPEFY---REYLRENSR--------------KRML-----L----- 474 (732)
T ss_pred -----------h------CCccccceEEEEEecCCHHHH---HHHHHhcch--------------hhhH-----H-----
Confidence 0 223555566779999998753 333321100 0000 0
Q ss_pred hhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhccCCCceeEecccHHHHHHHHHH
Q 001731 617 AEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQES 696 (1019)
Q Consensus 617 ~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~~~ 696 (1019)
......|+..+..++..+...++|+||||+++..+..+...
T Consensus 475 ---------------------------------------~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~ 515 (732)
T TIGR00603 475 ---------------------------------------YVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIK 515 (732)
T ss_pred ---------------------------------------hhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHH
Confidence 00123588888888877666899999999999988888887
Q ss_pred HhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCCCC-CchhhhhhhhhhhhhCC
Q 001731 697 IGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAW-NPSTDNQSVDRAYRIGQ 775 (1019)
Q Consensus 697 L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~W-Np~~~~QaiGRa~RiGQ 775 (1019)
|. +..|+|.++..+|.+++++|+.++... +|++|++|++|||++.|++||++++++ |+..++||+||+.|.+.
T Consensus 516 L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~-vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~ 589 (732)
T TIGR00603 516 LG-----KPFIYGPTSQQERMQILQNFQHNPKVN-TIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKK 589 (732)
T ss_pred cC-----CceEECCCCHHHHHHHHHHHHhCCCcc-EEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCC
Confidence 73 346899999999999999999775444 455569999999999999999999986 99999999999999987
Q ss_pred CC-----cEEEEEEeeCCCHHHHHHH
Q 001731 776 KK-----DVVVYRLMTCGTVEEKIYR 796 (1019)
Q Consensus 776 ~k-----~V~VyrLit~gTiEEkI~~ 796 (1019)
.+ +.++|.|++.+|.|+..-.
T Consensus 590 ~~~~~~~~A~fY~lVs~dT~E~~~s~ 615 (732)
T TIGR00603 590 GSDAEEYNAFFYSLVSKDTQEMYYST 615 (732)
T ss_pred CCccccccceEEEEecCCchHHHHHH
Confidence 65 3789999999999988753
No 21
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=1e-39 Score=364.36 Aligned_cols=272 Identities=32% Similarity=0.555 Sum_probs=215.5
Q ss_pred HHHHHHHHHHHhh---------cCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCC---eEEEEeCcccHHHHHHHHHHh
Q 001731 307 HQREGLRWLWSLH---------CQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIK---RALVVAPKTLLSHWIKELTAV 374 (1019)
Q Consensus 307 hQ~egV~~L~~~~---------~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~---~~LIVvP~sLl~qW~~E~~k~ 374 (1019)
||+.||.||+.++ ...+||||||+||+|||+++++++..+....... ++|||||.+++.||..||.+|
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~~~W~~E~~~~ 80 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLLSQWKEEIEKW 80 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchhhhhhhhhccc
Confidence 8999999999998 7789999999999999999999999887655443 699999999999999999999
Q ss_pred cC--CCcEEEEcccccchhhHHHHHhhhCCCEEEecHHHHH-----hccccccCCCcccCcCCCCCCCccEEEEcCCccc
Q 001731 375 GL--SAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVR-----NNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLI 447 (1019)
Q Consensus 375 ~~--~~~v~~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~-----~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~i 447 (1019)
++ ..++..+.+.... ..........++++|+||+.+. .....+ ....|++||+||||.+
T Consensus 81 ~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l------------~~~~~~~vIvDEaH~~ 146 (299)
T PF00176_consen 81 FDPDSLRVIIYDGDSER--RRLSKNQLPKYDVVITTYETLRKARKKKDKEDL------------KQIKWDRVIVDEAHRL 146 (299)
T ss_dssp SGT-TS-EEEESSSCHH--HHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHH------------HTSEEEEEEETTGGGG
T ss_pred ccccccccccccccccc--ccccccccccceeeecccccccccccccccccc------------ccccceeEEEeccccc
Confidence 94 4566666665511 1112223457899999999998 222222 2456999999999999
Q ss_pred CCcchHHhHHhhcCCcccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHH
Q 001731 448 KNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVA 527 (1019)
Q Consensus 448 KN~~s~~~kal~~l~~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~ 527 (1019)
||..+..++++..+.+.++|+|||||++|++.|+|++++|+.|..++....|.+.|..+ .........
T Consensus 147 k~~~s~~~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~------------~~~~~~~~~ 214 (299)
T PF00176_consen 147 KNKDSKRYKALRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRP------------DKENSYENI 214 (299)
T ss_dssp TTTTSHHHHHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHH------------HHTHHHHHH
T ss_pred ccccccccccccccccceEEeeccccccccccccccchheeeccccccchhhhhhhhhh------------ccccccccc
Confidence 99999999999999999999999999999999999999999999999999999998765 233345667
Q ss_pred HHHHHHhHHHHHHhhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhHHHhhhcC--------CChHHHH
Q 001731 528 KELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFD--------GSPLAAL 599 (1019)
Q Consensus 528 ~~L~~~i~p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~--------~~~l~~l 599 (1019)
..|+..++++++||++.++ ...+|+..+.++.++|++.|+.+|+.+........... ...+..+
T Consensus 215 ~~L~~~l~~~~~r~~~~d~--------~~~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (299)
T PF00176_consen 215 ERLRELLSEFMIRRTKKDV--------EKELPPKIEHVINVELSPEQRELYNELLKEARENLKQSSRKKSKKLSSLLQIL 286 (299)
T ss_dssp HHHHHHHCCCEECHCGGGG--------CTTSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCTT-T--TCHHHHHHHHHH
T ss_pred cccccccchhhhhhhcccc--------cccCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHH
Confidence 8899999999999999988 34599999999999999999999999887654322211 2357888
Q ss_pred HHHHHHhcChhhh
Q 001731 600 TILKKICDHPLLL 612 (1019)
Q Consensus 600 ~~Lrkic~hP~ll 612 (1019)
.+||++|+||.|+
T Consensus 287 ~~lr~~c~hp~l~ 299 (299)
T PF00176_consen 287 KRLRQVCNHPYLV 299 (299)
T ss_dssp HHHHHHHH-THHC
T ss_pred HHHHHHhCCcccC
Confidence 9999999999874
No 22
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=2.3e-35 Score=371.01 Aligned_cols=463 Identities=16% Similarity=0.138 Sum_probs=282.4
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCc-ccHHHHHHHHHHhcCC--Cc
Q 001731 303 MLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK-TLLSHWIKELTAVGLS--AK 379 (1019)
Q Consensus 303 ~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~-sLl~qW~~E~~k~~~~--~~ 379 (1019)
.+++||.+.+..++. +++|++++||+|||++++.++..++. ...+++|||||+ .|+.||..++.++... ..
T Consensus 15 ~~r~yQ~~~~~~~l~-----~n~lv~~ptG~GKT~~a~~~i~~~l~-~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~ 88 (773)
T PRK13766 15 EARLYQQLLAATALK-----KNTLVVLPTGLGKTAIALLVIAERLH-KKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEK 88 (773)
T ss_pred CccHHHHHHHHHHhc-----CCeEEEcCCCccHHHHHHHHHHHHHH-hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCce
Confidence 579999998887765 38999999999999998888777663 445799999998 7889999999887533 35
Q ss_pred EEEEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcchHHhHHhh
Q 001731 380 IREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLL 459 (1019)
Q Consensus 380 v~~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s~~~kal~ 459 (1019)
+..+.|...... ....+..++|+++||+.+........ .....|++||+||||++.+..+..+.+-.
T Consensus 89 v~~~~g~~~~~~---r~~~~~~~~iiv~T~~~l~~~l~~~~----------~~~~~~~liVvDEaH~~~~~~~~~~i~~~ 155 (773)
T PRK13766 89 IVVFTGEVSPEK---RAELWEKAKVIVATPQVIENDLIAGR----------ISLEDVSLLIFDEAHRAVGNYAYVYIAER 155 (773)
T ss_pred EEEEeCCCCHHH---HHHHHhCCCEEEECHHHHHHHHHcCC----------CChhhCcEEEEECCccccccccHHHHHHH
Confidence 666666443322 22345678999999999987543211 12446899999999999876554333222
Q ss_pred c---CCcccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHHHHhHH
Q 001731 460 E---IPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQP 536 (1019)
Q Consensus 460 ~---l~~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~~L~~~i~p 536 (1019)
. .+..++++|||||.++ ...+..++..+....+..+..|.......+....... ........+..++..+..
T Consensus 156 ~~~~~~~~~il~lTaTP~~~-~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~----~~v~l~~~~~~i~~~l~~ 230 (773)
T PRK13766 156 YHEDAKNPLVLGLTASPGSD-EEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEW----VRVELPEELKEIRDLLNE 230 (773)
T ss_pred HHhcCCCCEEEEEEcCCCCC-HHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEE----EEeCCcHHHHHHHHHHHH
Confidence 2 2455689999999875 5666666666543322222112111111000000000 000011234567777778
Q ss_pred HHHHhhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcChhhhhhhh
Q 001731 537 YFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLTKRA 616 (1019)
Q Consensus 537 ~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~ll~~~~ 616 (1019)
++.++.+...-.. ..+.....+....+...++.++..+..... . ....+..+..+.+++....++....
T Consensus 231 ~~~~~l~~l~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~-~---~~~~~~~~~~~~~l~~~~~~l~~~~ 299 (773)
T PRK13766 231 ALKDRLKKLKELG-------VIVSISPDVSKKELLGLQKKLQQEIANDDS-E---GYEAISILAEAMKLRHAVELLETQG 299 (773)
T ss_pred HHHHHHHHHHHCC-------CcccCCCCcCHHHHHHHHHHHHHHhhcCch-H---HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 7777665432111 011111111111222233333322221000 0 0000111111222222111111110
Q ss_pred hhhh---hhhccCCCC-hhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhc--cCCCceeEecccHHHH
Q 001731 617 AEDV---LDGMDSMLN-PEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLI--PEGHNVLIFSQTRKML 690 (1019)
Q Consensus 617 ~~~~---~~~~~~~~~-~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~--~~g~KvLIFsq~~~~l 690 (1019)
.... ...+..... .........+... ................++|+..|.++|.++. ..+.|+||||+++.++
T Consensus 300 ~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~ 378 (773)
T PRK13766 300 VEALRRYLERLREEARSSGGSKASKRLVED-PRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTA 378 (773)
T ss_pred HHHHHHHHHHHHhhccccCCcHHHHHHHhC-HHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHH
Confidence 0000 000000000 0000000000000 0000000001112335789999999999876 5789999999999999
Q ss_pred HHHHHHHhhcCCeEEEEECC--------CCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCCCCCchh
Q 001731 691 NLIQESIGSKGYKFLRIDGT--------TKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPST 762 (1019)
Q Consensus 691 diL~~~L~~~gi~~~ridG~--------~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~ 762 (1019)
+.|...|...|+++.+++|. ++..+|.+++.+|+++... +|++|.++++|+|++.+++||+|||+||+..
T Consensus 379 ~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~--vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r 456 (773)
T PRK13766 379 EKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFN--VLVSTSVAEEGLDIPSVDLVIFYEPVPSEIR 456 (773)
T ss_pred HHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCC--EEEECChhhcCCCcccCCEEEEeCCCCCHHH
Confidence 99999999999999999996 8889999999999998643 7889999999999999999999999999999
Q ss_pred hhhhhhhhhhhCCCCcEEEEEEeeCCCHHHHHHHHHHHHHhHHH
Q 001731 763 DNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFK 806 (1019)
Q Consensus 763 ~~QaiGRa~RiGQ~k~V~VyrLit~gTiEEkI~~rq~~K~~l~~ 806 (1019)
++||+||++|.|+ +.||.|++.+|+||.+|.....|...+.
T Consensus 457 ~iQR~GR~gR~~~---~~v~~l~~~~t~ee~~y~~~~~ke~~~~ 497 (773)
T PRK13766 457 SIQRKGRTGRQEE---GRVVVLIAKGTRDEAYYWSSRRKEKKMK 497 (773)
T ss_pred HHHHhcccCcCCC---CEEEEEEeCCChHHHHHHHhhHHHHHHH
Confidence 9999998888765 6789999999999999988777766653
No 23
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=8.5e-33 Score=309.11 Aligned_cols=460 Identities=19% Similarity=0.155 Sum_probs=283.4
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCc-ccHHHHHHHHHHhc--CCCc
Q 001731 303 MLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK-TLLSHWIKELTAVG--LSAK 379 (1019)
Q Consensus 303 ~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~-sLl~qW~~E~~k~~--~~~~ 379 (1019)
..|.||...+...+. ++++++.+||||||++|+.+++..+.+... ++|+++|+ .|+.|...-|.++. |...
T Consensus 15 e~R~YQ~~i~a~al~-----~NtLvvlPTGLGKT~IA~~V~~~~l~~~~~-kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~ 88 (542)
T COG1111 15 EPRLYQLNIAAKALF-----KNTLVVLPTGLGKTFIAAMVIANRLRWFGG-KVLFLAPTKPLVLQHAEFCRKVTGIPEDE 88 (542)
T ss_pred cHHHHHHHHHHHHhh-----cCeEEEecCCccHHHHHHHHHHHHHHhcCC-eEEEecCCchHHHHHHHHHHHHhCCChhh
Confidence 468899988776665 599999999999999999999888777655 89999998 77888888888764 4466
Q ss_pred EEEEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcchH--HhHH
Q 001731 380 IREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQ--RAKS 457 (1019)
Q Consensus 380 v~~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s~--~~ka 457 (1019)
+..+.|.-....+ ...|....|++.||+++.++..... ++...+.+||+||||+.-...+- +++.
T Consensus 89 i~~ltGev~p~~R---~~~w~~~kVfvaTPQvveNDl~~Gr----------id~~dv~~lifDEAHRAvGnyAYv~Va~~ 155 (542)
T COG1111 89 IAALTGEVRPEER---EELWAKKKVFVATPQVVENDLKAGR----------IDLDDVSLLIFDEAHRAVGNYAYVFVAKE 155 (542)
T ss_pred eeeecCCCChHHH---HHHHhhCCEEEeccHHHHhHHhcCc----------cChHHceEEEechhhhccCcchHHHHHHH
Confidence 7777775544332 3357788999999999999876433 34566899999999998766554 3444
Q ss_pred hhcCCcc-cEEEeecCCCCCCHHHHHHHHHhhcCCCCCCh---HHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHHHH
Q 001731 458 LLEIPSA-HRIIISGTPIQNNLKELWALFNFCCPELLGDN---KWFKEKYELPILRGNDKHALDREKRIGSAVAKELRER 533 (1019)
Q Consensus 458 l~~l~~~-~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~---~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~~L~~~ 533 (1019)
......+ +.++|||||- +....+...++-|..+..--. ..=...|...+.....+-....+ .......|...
T Consensus 156 y~~~~k~~~ilgLTASPG-s~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e---~~~ir~~l~~~ 231 (542)
T COG1111 156 YLRSAKNPLILGLTASPG-SDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEE---IKEIRDLLRDA 231 (542)
T ss_pred HHHhccCceEEEEecCCC-CCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHH---HHHHHHHHHHH
Confidence 4444444 6788999994 566777777666544322110 01111222221111111111111 11222333444
Q ss_pred hHHHHHHhhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHH--HhcCh-h
Q 001731 534 IQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKK--ICDHP-L 610 (1019)
Q Consensus 534 i~p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrk--ic~hP-~ 610 (1019)
++|.+- .++.--+. ...++ -.++.+...............+..+.++..+.. -|.|+ .
T Consensus 232 l~~~Lk-~L~~~g~~----------------~~~~~--~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~e 292 (542)
T COG1111 232 LKPRLK-PLKELGVI----------------ESSSP--VSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALE 292 (542)
T ss_pred HHHHHH-HHHHcCce----------------eccCc--ccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHH
Confidence 443321 11111100 00011 123333333311111111111111122211111 12222 1
Q ss_pred hhhhhhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhh-----hhhhccchhhhHHHHHHHHHhhc--cCCCceeEe
Q 001731 611 LLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDD-----FQEQHDNISCKISFILSLLDKLI--PEGHNVLIF 683 (1019)
Q Consensus 611 ll~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~S~Kl~~L~~LL~~~~--~~g~KvLIF 683 (1019)
++...........+..+...............+.+...... ......-..||+..+.++|.+.. ..+.|+|||
T Consensus 293 lletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVF 372 (542)
T COG1111 293 LLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVF 372 (542)
T ss_pred HHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEE
Confidence 22111111111111000000000000000000000000000 00122235899999999999987 567899999
Q ss_pred cccHHHHHHHHHHHhhcCCeEE-EEEC--------CCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEc
Q 001731 684 SQTRKMLNLIQESIGSKGYKFL-RIDG--------TTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVV 754 (1019)
Q Consensus 684 sq~~~~ldiL~~~L~~~gi~~~-ridG--------~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~ 754 (1019)
++|+.+++.|..+|...|+... ++-| +|++++...+|++|+.|... +|++|.+|.+|||++.++.||+|
T Consensus 373 T~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~n--VLVaTSVgEEGLDIp~vDlVifY 450 (542)
T COG1111 373 TEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYN--VLVATSVGEEGLDIPEVDLVIFY 450 (542)
T ss_pred ehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCce--EEEEcccccccCCCCcccEEEEe
Confidence 9999999999999999988775 6655 69999999999999999855 89999999999999999999999
Q ss_pred CCCCCchhhhhhhhhhhhhCCCCcEEEEEEeeCCCHHHHHHHHHHHHHhHHHHHh
Q 001731 755 DPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTAT 809 (1019)
Q Consensus 755 D~~WNp~~~~QaiGRa~RiGQ~k~V~VyrLit~gTiEEkI~~rq~~K~~l~~~~~ 809 (1019)
||.-+|...+||.||++| ++.-.||.|++.||-||..|....+|..-+...+
T Consensus 451 EpvpSeIR~IQR~GRTGR---~r~Grv~vLvt~gtrdeayy~~s~rke~~m~e~i 502 (542)
T COG1111 451 EPVPSEIRSIQRKGRTGR---KRKGRVVVLVTEGTRDEAYYYSSRRKEQKMIESI 502 (542)
T ss_pred cCCcHHHHHHHhhCcccc---CCCCeEEEEEecCchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998 5778899999999999999999888876665544
No 24
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=100.00 E-value=1.5e-33 Score=339.38 Aligned_cols=268 Identities=23% Similarity=0.317 Sum_probs=199.3
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHHhhc----------------CCCCeEEEEeCcccHHHHHHHHHHhcCCC-cEEEEc
Q 001731 322 GKGGILGDDMGLGKTMQICGFLAGLFHS----------------RLIKRALVVAPKTLLSHWIKELTAVGLSA-KIREYF 384 (1019)
Q Consensus 322 ~~GgILaDemGLGKTlqaIali~~l~~~----------------~~~~~~LIVvP~sLl~qW~~E~~k~~~~~-~v~~~~ 384 (1019)
|..++++++||+|||...++........ ...|.+|||||.+++.||..||.++++.. ++..|.
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~QW~~EI~kH~~~~lKv~~Y~ 453 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAILMQWFEEIHKHISSLLKVLLYF 453 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHHHHHHHHHHHHhccccceEEEEe
Confidence 3456999999999999877655432211 12468999999999999999999999888 888888
Q ss_pred ccccchhhHHHHHhhhCCCEEEecHHHHHhccccccC----------CCcccCcCCCCCCCccEEEEcCCcccCCcchHH
Q 001731 385 GTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRG----------SSFISDEAGDDDAIWDYMILDEGHLIKNPSTQR 454 (1019)
Q Consensus 385 g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~----------~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s~~ 454 (1019)
|......-.. ..+..||||+|||+.+++....-.. .++..-..++-.+.|.+||||||+.+...+|..
T Consensus 454 Girk~~~~~~--~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvesssS~~ 531 (1394)
T KOG0298|consen 454 GIRKTFWLSP--FELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESSSSAA 531 (1394)
T ss_pred chhhhcccCc--hhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcchHHHH
Confidence 8654322211 3456899999999999876543211 111222233456679999999999999999999
Q ss_pred hHHhhcCCcccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHHHHh
Q 001731 455 AKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERI 534 (1019)
Q Consensus 455 ~kal~~l~~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~~L~~~i 534 (1019)
++.+..|++.++|+.||||+|+ +.+|+.||.|+.-.+|+..++|.+....+.... +....+.++.
T Consensus 532 a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~~~~r--------------a~~~~~~dl~ 596 (1394)
T KOG0298|consen 532 AEMVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKAYQLR--------------AKCEPLLDLF 596 (1394)
T ss_pred HHHHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHHHHHH--------------hhhhhHHHHH
Confidence 9999999999999999999999 999999999999999999999988776544322 2334567778
Q ss_pred HHHHHHhhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHh----hH-----HHh-hhcC------------
Q 001731 535 QPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLN----SE-----IVL-SAFD------------ 592 (1019)
Q Consensus 535 ~p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~----~~-----~~~-~~~~------------ 592 (1019)
...+-|+.+..|.. ...+|+..+.+.+..+++.+-.+|+.... .. ... ....
T Consensus 597 ~q~l~R~~k~~v~~------el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~~l~~~~ 670 (1394)
T KOG0298|consen 597 KQLLWRTFKSKVEH------ELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLASLSPQL 670 (1394)
T ss_pred HhhhhhhhhHHHHH------HhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccccCChhh
Confidence 88888999988876 45688888888888888888777765321 10 000 0000
Q ss_pred -CChHHHHHHHHHHhcChhhh
Q 001731 593 -GSPLAALTILKKICDHPLLL 612 (1019)
Q Consensus 593 -~~~l~~l~~Lrkic~hP~ll 612 (1019)
...+..+.+||++|+||...
T Consensus 671 ~a~i~~~l~rLRq~Cchplv~ 691 (1394)
T KOG0298|consen 671 LAIILKWLLRLRQACCHPLVG 691 (1394)
T ss_pred HHHHHHHHHHHHHhhcccccc
Confidence 01345678899999999753
No 25
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.97 E-value=2.6e-28 Score=286.18 Aligned_cols=369 Identities=24% Similarity=0.257 Sum_probs=262.6
Q ss_pred cccCCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCc-ccHHHHHHHHHHhcCC
Q 001731 299 KIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK-TLLSHWIKELTAVGLS 377 (1019)
Q Consensus 299 ~i~~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~-sLl~qW~~E~~k~~~~ 377 (1019)
.....|+|||.+++.-++......+.|++..+||.|||+.++.++..+.. ++|||||. .|+.||...+.++...
T Consensus 32 ~~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~-----~~Lvlv~~~~L~~Qw~~~~~~~~~~ 106 (442)
T COG1061 32 AFEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKR-----STLVLVPTKELLDQWAEALKKFLLL 106 (442)
T ss_pred ccCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcC-----CEEEEECcHHHHHHHHHHHHHhcCC
Confidence 34557999999999888776555889999999999999999988887643 39999998 5679999888777655
Q ss_pred C-cEEEEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcchHHhH
Q 001731 378 A-KIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAK 456 (1019)
Q Consensus 378 ~-~v~~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s~~~k 456 (1019)
. .+..+.+...... ...|.|+||+++.... .+. ......|++||+||||++..+....
T Consensus 107 ~~~~g~~~~~~~~~~---------~~~i~vat~qtl~~~~-~l~---------~~~~~~~~liI~DE~Hh~~a~~~~~-- 165 (442)
T COG1061 107 NDEIGIYGGGEKELE---------PAKVTVATVQTLARRQ-LLD---------EFLGNEFGLIIFDEVHHLPAPSYRR-- 165 (442)
T ss_pred ccccceecCceeccC---------CCcEEEEEhHHHhhhh-hhh---------hhcccccCEEEEEccccCCcHHHHH--
Confidence 4 3444444332211 1469999999998753 000 0113369999999999996554332
Q ss_pred HhhcCCccc-EEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHHHHhH
Q 001731 457 SLLEIPSAH-RIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQ 535 (1019)
Q Consensus 457 al~~l~~~~-RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~~L~~~i~ 535 (1019)
.+..+...+ +++|||||.......+..++.++.|-.+
T Consensus 166 ~~~~~~~~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy------------------------------------------ 203 (442)
T COG1061 166 ILELLSAAYPRLGLTATPEREDGGRIGDLFDLIGPIVY------------------------------------------ 203 (442)
T ss_pred HHHhhhcccceeeeccCceeecCCchhHHHHhcCCeEe------------------------------------------
Confidence 333344445 9999999975543444444444332211
Q ss_pred HHHHHhhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcChhhhhhh
Q 001731 536 PYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLTKR 615 (1019)
Q Consensus 536 p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~ll~~~ 615 (1019)
.....+.+. ...|.+.....+++.++......|..............+. +..
T Consensus 204 ----~~~~~~li~------~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~----------------~~~-- 255 (442)
T COG1061 204 ----EVSLKELID------EGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGT----------------LRA-- 255 (442)
T ss_pred ----ecCHHHHHh------CCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhh----------------hhH--
Confidence 111111111 2346777888889989998888887765432211100000 000
Q ss_pred hhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhccCCCceeEecccHHHHHHHHH
Q 001731 616 AAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQE 695 (1019)
Q Consensus 616 ~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~~ 695 (1019)
.............|+..+..++.... .+.+++||+.+......+..
T Consensus 256 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~ 301 (442)
T COG1061 256 ---------------------------------ENEARRIAIASERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAK 301 (442)
T ss_pred ---------------------------------HHHHHHHhhccHHHHHHHHHHHHHhc-CCCcEEEEeccHHHHHHHHH
Confidence 00000011123557777778887766 78899999999999999999
Q ss_pred HHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCCCCCchhhhhhhhhhhh-hC
Q 001731 696 SIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYR-IG 774 (1019)
Q Consensus 696 ~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QaiGRa~R-iG 774 (1019)
.+...|+ +..++|.++..+|..+++.|..+. ..+|++++++.+|+|+++|+.+|+..|.-++..+.|++||+.| ..
T Consensus 302 ~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~--~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~ 378 (442)
T COG1061 302 LFLAPGI-VEAITGETPKEEREAILERFRTGG--IKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAE 378 (442)
T ss_pred HhcCCCc-eEEEECCCCHHHHHHHHHHHHcCC--CCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCC
Confidence 9998888 999999999999999999999987 3488899999999999999999999999999999999999999 44
Q ss_pred CCCc--EEEEEEeeCCCHHHHHHHHHHH
Q 001731 775 QKKD--VVVYRLMTCGTVEEKIYRKQIF 800 (1019)
Q Consensus 775 Q~k~--V~VyrLit~gTiEEkI~~rq~~ 800 (1019)
.+.. +..|-++...+.+..+.+....
T Consensus 379 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (442)
T COG1061 379 GKEDTLALDYSLVPDDLGEEDIARRRRL 406 (442)
T ss_pred CCCceEEEEEEeecCcccccchhhhhhh
Confidence 4444 6788888889988888765544
No 26
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.97 E-value=3.4e-28 Score=290.48 Aligned_cols=339 Identities=14% Similarity=0.161 Sum_probs=224.7
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCc-ccHHHHHHHHHHhcCC--C
Q 001731 302 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK-TLLSHWIKELTAVGLS--A 378 (1019)
Q Consensus 302 ~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~-sLl~qW~~E~~k~~~~--~ 378 (1019)
..|+|||.+++..++. +..+|+..+||+|||++++.++..+...+ ..++|||||+ .|+.||.++|.+|+.. .
T Consensus 113 ~~~r~~Q~~av~~~l~----~~~~il~apTGsGKT~i~~~l~~~~~~~~-~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~ 187 (501)
T PHA02558 113 IEPHWYQYDAVYEGLK----NNRRLLNLPTSAGKSLIQYLLSRYYLENY-EGKVLIIVPTTSLVTQMIDDFVDYRLFPRE 187 (501)
T ss_pred CCCCHHHHHHHHHHHh----cCceEEEeCCCCCHHHHHHHHHHHHHhcC-CCeEEEEECcHHHHHHHHHHHHHhcccccc
Confidence 4799999999977665 56789999999999998776554443332 3489999998 7889999999997632 2
Q ss_pred cEEEEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcchHHhHHh
Q 001731 379 KIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSL 458 (1019)
Q Consensus 379 ~v~~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s~~~kal 458 (1019)
.+....+..... ...+|+|+||+.+.+.... ....|++||+||||++... .....+
T Consensus 188 ~~~~i~~g~~~~---------~~~~I~VaT~qsl~~~~~~-------------~~~~~~~iIvDEaH~~~~~--~~~~il 243 (501)
T PHA02558 188 AMHKIYSGTAKD---------TDAPIVVSTWQSAVKQPKE-------------WFDQFGMVIVDECHLFTGK--SLTSII 243 (501)
T ss_pred ceeEEecCcccC---------CCCCEEEeeHHHHhhchhh-------------hccccCEEEEEchhcccch--hHHHHH
Confidence 222222222111 3468999999998653321 1235799999999999653 234455
Q ss_pred hcC-CcccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHHHHhHHH
Q 001731 459 LEI-PSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPY 537 (1019)
Q Consensus 459 ~~l-~~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~~L~~~i~p~ 537 (1019)
..+ ++.++++|||||..... ..+.+..++.|-.. ... ...++
T Consensus 244 ~~~~~~~~~lGLTATp~~~~~-~~~~~~~~fG~i~~----------------~v~-----------------~~~li--- 286 (501)
T PHA02558 244 TKLDNCKFKFGLTGSLRDGKA-NILQYVGLFGDIFK----------------PVT-----------------TSQLM--- 286 (501)
T ss_pred HhhhccceEEEEeccCCCccc-cHHHHHHhhCCceE----------------Eec-----------------HHHHH---
Confidence 556 57889999999954321 12222222222100 000 00000
Q ss_pred HHHhhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcChhhhhhhhh
Q 001731 538 FLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAA 617 (1019)
Q Consensus 538 ~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~ll~~~~~ 617 (1019)
. ...+.+.....+.+..++.....+. . .... ..+..++
T Consensus 287 ----------~------~g~l~~~~~~~v~~~~~~~~~~~~~---~----------~~~~--~~~~~l~----------- 324 (501)
T PHA02558 287 ----------E------EGQVTDLKINSIFLRYPDEDRVKLK---G----------EDYQ--EEIKYIT----------- 324 (501)
T ss_pred ----------h------CCCcCCceEEEEeccCCHHHhhhhc---c----------cchH--HHHHHHh-----------
Confidence 0 0011111222233333322110000 0 0000 0000000
Q ss_pred hhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhccCCCceeEecccHHHHHHHHHHH
Q 001731 618 EDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESI 697 (1019)
Q Consensus 618 ~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~~~L 697 (1019)
....+...+..++..+...+.++|||+..+..++.|...|
T Consensus 325 ----------------------------------------~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L 364 (501)
T PHA02558 325 ----------------------------------------SHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEML 364 (501)
T ss_pred ----------------------------------------ccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHH
Confidence 1123555666666666667889999999999999999999
Q ss_pred hhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCCCCCchhhhhhhhhhhhhCCCC
Q 001731 698 GSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKK 777 (1019)
Q Consensus 698 ~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QaiGRa~RiGQ~k 777 (1019)
...|+++..++|+++.++|.++++.|+.+. ..|+|+|+++.|+|+|++.+++||++.|+.+...+.|++||++|.|..+
T Consensus 365 ~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~-~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 365 KKVYDKVYYVSGEVDTEDRNEMKKIAEGGK-GIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred HHcCCCEEEEeCCCCHHHHHHHHHHHhCCC-CeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCC
Confidence 999999999999999999999999998765 3455556699999999999999999999999999999999999998766
Q ss_pred -cEEEEEEeeCCC
Q 001731 778 -DVVVYRLMTCGT 789 (1019)
Q Consensus 778 -~V~VyrLit~gT 789 (1019)
.|.||.++-.-.
T Consensus 444 ~~~~i~D~vD~~~ 456 (501)
T PHA02558 444 SIATVWDIIDDLS 456 (501)
T ss_pred ceEEEEEeecccc
Confidence 588999986543
No 27
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.96 E-value=1.9e-29 Score=278.12 Aligned_cols=359 Identities=19% Similarity=0.303 Sum_probs=251.4
Q ss_pred ccccCccccCCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCccc-HHHHHHHH
Q 001731 293 TYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTL-LSHWIKEL 371 (1019)
Q Consensus 293 ~~~lp~~i~~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sL-l~qW~~E~ 371 (1019)
.+.|.-.-...|+|||...+..|.. ..+.+.||++.++|.|||+..+..++.. .+++||+|..++ +.||..+|
T Consensus 292 dl~idLKPst~iRpYQEksL~KMFG-NgRARSGiIVLPCGAGKtLVGvTAa~ti-----kK~clvLcts~VSVeQWkqQf 365 (776)
T KOG1123|consen 292 DLDIDLKPSTQIRPYQEKSLSKMFG-NGRARSGIIVLPCGAGKTLVGVTAACTI-----KKSCLVLCTSAVSVEQWKQQF 365 (776)
T ss_pred CCCcCcCcccccCchHHHHHHHHhC-CCcccCceEEEecCCCCceeeeeeeeee-----cccEEEEecCccCHHHHHHHH
Confidence 3344444456799999999999976 2334789999999999999877655543 368999999876 79999999
Q ss_pred HHhcCCC--cEEEEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCC
Q 001731 372 TAVGLSA--KIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKN 449 (1019)
Q Consensus 372 ~k~~~~~--~v~~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN 449 (1019)
..|..-. .+..+... .... .....+|+|+||.|+....+...... .-...+....|.++|+||.|-+
T Consensus 366 k~wsti~d~~i~rFTsd--~Ke~-----~~~~~gvvvsTYsMva~t~kRS~eae--k~m~~l~~~EWGllllDEVHvv-- 434 (776)
T KOG1123|consen 366 KQWSTIQDDQICRFTSD--AKER-----FPSGAGVVVTTYSMVAYTGKRSHEAE--KIMDFLRGREWGLLLLDEVHVV-- 434 (776)
T ss_pred HhhcccCccceEEeecc--cccc-----CCCCCcEEEEeeehhhhcccccHHHH--HHHHHHhcCeeeeEEeehhccc--
Confidence 9996433 23333222 2111 12467899999999964432211110 0112234667999999999998
Q ss_pred cchHHhHHhhcCCcccEEEeecCCCCCCHHHHHHHHHhhc-CCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHH
Q 001731 450 PSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCC-PELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAK 528 (1019)
Q Consensus 450 ~~s~~~kal~~l~~~~RllLTGTPiqN~l~EL~sll~fl~-p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~ 528 (1019)
|.....+.+..+.+..+++||||-+... |-..-|+||- |.++ ...|..-.-
T Consensus 435 PA~MFRRVlsiv~aHcKLGLTATLvRED--dKI~DLNFLIGPKlY-EAnWmdL~~------------------------- 486 (776)
T KOG1123|consen 435 PAKMFRRVLSIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLY-EANWMDLQK------------------------- 486 (776)
T ss_pred hHHHHHHHHHHHHHHhhccceeEEeecc--ccccccceeecchhh-hccHHHHHh-------------------------
Confidence 5556666666778899999999987542 3344456653 3322 111111000
Q ss_pred HHHHHhHHHHHHhhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcC
Q 001731 529 ELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDH 608 (1019)
Q Consensus 529 ~L~~~i~p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~h 608 (1019)
...+....-..|||+||+. +|..++........
T Consensus 487 --------------------------kGhIA~VqCaEVWCpMt~e---Fy~eYL~~~t~kr~------------------ 519 (776)
T KOG1123|consen 487 --------------------------KGHIAKVQCAEVWCPMTPE---FYREYLRENTRKRM------------------ 519 (776)
T ss_pred --------------------------CCceeEEeeeeeecCCCHH---HHHHHHhhhhhhhh------------------
Confidence 1112233344699999987 56666553211100
Q ss_pred hhhhhhhhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhccCCCceeEecccHH
Q 001731 609 PLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRK 688 (1019)
Q Consensus 609 P~ll~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~ 688 (1019)
| .......|++++.-|++.+...|.|+|||+...-
T Consensus 520 --l-------------------------------------------LyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvf 554 (776)
T KOG1123|consen 520 --L-------------------------------------------LYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVF 554 (776)
T ss_pred --e-------------------------------------------eeecCcchhHHHHHHHHHHHhcCCeEEEEeccHH
Confidence 0 0011245888888888888889999999999988
Q ss_pred HHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCCCC-Cchhhhhhh
Q 001731 689 MLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAW-NPSTDNQSV 767 (1019)
Q Consensus 689 ~ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~W-Np~~~~Qai 767 (1019)
.|...+-.|.+ -.|.|.+++.+|.++++.|+.++.+.-+.+| ++|...++|+.|+.+|....+. +-..+.||.
T Consensus 555 ALk~YAikl~K-----pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlS-KVgDtSiDLPEAnvLIQISSH~GSRRQEAQRL 628 (776)
T KOG1123|consen 555 ALKEYAIKLGK-----PFIYGPTSQNERMKILQNFQTNPKVNTIFLS-KVGDTSIDLPEANVLIQISSHGGSRRQEAQRL 628 (776)
T ss_pred HHHHHHHHcCC-----ceEECCCchhHHHHHHHhcccCCccceEEEe-eccCccccCCcccEEEEEcccccchHHHHHHH
Confidence 77776665544 3689999999999999999998877777777 9999999999999999998887 667899999
Q ss_pred hhhhhhCCCC----cEEEEEEeeCCCHHHHH
Q 001731 768 DRAYRIGQKK----DVVVYRLMTCGTVEEKI 794 (1019)
Q Consensus 768 GRa~RiGQ~k----~V~VyrLit~gTiEEkI 794 (1019)
||+.|.-... +++.|.|+..+|.|...
T Consensus 629 GRILRAKk~~de~fnafFYSLVS~DTqEM~Y 659 (776)
T KOG1123|consen 629 GRILRAKKRNDEEFNAFFYSLVSKDTQEMYY 659 (776)
T ss_pred HHHHHHhhcCccccceeeeeeeecchHHHHh
Confidence 9999986433 48899999999988644
No 28
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.96 E-value=2.3e-27 Score=280.06 Aligned_cols=468 Identities=17% Similarity=0.217 Sum_probs=282.6
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCc-ccHHHHHHHHHHhcCCCcEE
Q 001731 303 MLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK-TLLSHWIKELTAVGLSAKIR 381 (1019)
Q Consensus 303 ~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~-sLl~qW~~E~~k~~~~~~v~ 381 (1019)
.||+||.+.++-.+ +++.|+|.+||+|||++|+.++..++++.+.+++++++|+ .|+.|....|..++.+..+.
T Consensus 62 ~lR~YQ~eivq~AL-----gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~~~~T 136 (746)
T KOG0354|consen 62 ELRNYQEELVQPAL-----GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIYLIPYSVT 136 (746)
T ss_pred cccHHHHHHhHHhh-----cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhccCcccce
Confidence 49999999886553 5899999999999999999999999999988999999998 56788888888887665555
Q ss_pred EEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCC--cchHHhHHhh
Q 001731 382 EYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKN--PSTQRAKSLL 459 (1019)
Q Consensus 382 ~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN--~~s~~~kal~ 459 (1019)
...+......... ..+...+|++.|++.+.++........ ...|.++|+||||+... +.+.+.+.+.
T Consensus 137 ~~l~~~~~~~~r~--~i~~s~~vff~TpQil~ndL~~~~~~~---------ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l 205 (746)
T KOG0354|consen 137 GQLGDTVPRSNRG--EIVASKRVFFRTPQILENDLKSGLHDE---------LSDFSLIVFDECHRTSKNHPYNNIMREYL 205 (746)
T ss_pred eeccCccCCCchh--hhhcccceEEeChHhhhhhcccccccc---------cceEEEEEEcccccccccccHHHHHHHHH
Confidence 5555433333322 466788999999999999877544221 25589999999999843 3455555555
Q ss_pred cCC--cccEEEeecCCCCCCHHHHHHHHHhhcCCCCCCh--HHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHHHHhH
Q 001731 460 EIP--SAHRIIISGTPIQNNLKELWALFNFCCPELLGDN--KWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQ 535 (1019)
Q Consensus 460 ~l~--~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~--~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~~L~~~i~ 535 (1019)
.++ ..+.|+|||||- ++.......++-|+-. +.-+ ..-...|..--...... .. -..-....-..|...+.
T Consensus 206 ~~k~~~~qILgLTASpG-~~~~~v~~~I~~L~as-ldvr~~ssi~~~y~~lr~~~~i~--v~-~~~~~~~~~~~f~~~i~ 280 (746)
T KOG0354|consen 206 DLKNQGNQILGLTASPG-SKLEQVQNVIDNLCAS-LDVRTESSIKSNYEELREHVQIP--VD-LSLCERDIEDPFGMIIE 280 (746)
T ss_pred HhhhccccEEEEecCCC-ccHHHHHHHHHhhhee-cccchhhhhhhhHHHHhccCccc--Cc-HHHhhhhhhhhHHHHHH
Confidence 543 336688999998 7777777777666554 2211 11122222110000000 00 11112233455777777
Q ss_pred HHHHHhhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHH-----HHhcChh
Q 001731 536 PYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILK-----KICDHPL 610 (1019)
Q Consensus 536 p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lr-----kic~hP~ 610 (1019)
|++.+-....+....... ...+. .....+...+..+... ....+.++..+. .++.+-.
T Consensus 281 p~l~~l~~~~l~~~~~~~------~~~~~----~~~~~~~~~~~~~~~~-------q~~~f~~~~~~~~~~~ll~~~gir 343 (746)
T KOG0354|consen 281 PLLQQLQEEGLIEISDKS------TSYEQ----WVVQAEKAAAPNGPEN-------QRNCFYALHLRKYNLALLISDGIR 343 (746)
T ss_pred HHHHHHHhcCcccccccc------ccccc----hhhhhhhhhccCCCcc-------chhhHHHHHHHHHHHHHHhhcchh
Confidence 877655433332111000 00000 0001111111100000 000011111111 0111111
Q ss_pred hhhhhhhhhhhhhccCCCChhHHH----------HHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhcc--CCC
Q 001731 611 LLTKRAAEDVLDGMDSMLNPEDAA----------LAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIP--EGH 678 (1019)
Q Consensus 611 ll~~~~~~~~~~~~~~~~~~e~~~----------~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~--~g~ 678 (1019)
.+. ..+.+.......... ...-+...+. +-..+.......++|+..|.++|..... +..
T Consensus 344 ~~~------~l~~~~~f~~e~~~~k~~~~~~e~~~~~~~~~~m~---~~~~l~~~~~~~npkle~l~~~l~e~f~~~~ds 414 (746)
T KOG0354|consen 344 FVD------ALDYLEDFYEEVALKKYLKLELEARLIRNFTENMN---ELEHLSLDPPKENPKLEKLVEILVEQFEQNPDS 414 (746)
T ss_pred hHH------HHhhhhhhccccchhHHHHHHhcchhhHHHHHHHH---hhhhhhcCCCccChhHHHHHHHHHHHhhcCCCc
Confidence 000 000000000000000 0000000000 0111112222468999999999987754 678
Q ss_pred ceeEecccHHHHHHHHHHHhh---cCCeEEEEEC--------CCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCccc
Q 001731 679 NVLIFSQTRKMLNLIQESIGS---KGYKFLRIDG--------TTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTK 747 (1019)
Q Consensus 679 KvLIFsq~~~~ldiL~~~L~~---~gi~~~ridG--------~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~ 747 (1019)
|+|||+.++..+..|..+|.. .|++...+-| +|++.+.+.+++.|++|... +|++|.+|.+|||++.
T Consensus 415 R~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~N--vLVATSV~EEGLDI~e 492 (746)
T KOG0354|consen 415 RTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEIN--VLVATSVAEEGLDIGE 492 (746)
T ss_pred cEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCcc--EEEEecchhccCCccc
Confidence 999999999999999998872 2566666655 68899999999999999876 9999999999999999
Q ss_pred CCEEEEcCCCCCchhhhhhhhhhhhhCCCCcEEEEEEeeCCCHHHHHHHHHHHHHhHHHHHhccccccccCCHHHHHHHH
Q 001731 748 ADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELL 827 (1019)
Q Consensus 748 A~~VIi~D~~WNp~~~~QaiGRa~RiGQ~k~V~VyrLit~gTiEEkI~~rq~~K~~l~~~~~~~~~~~~~fs~~dL~eLf 827 (1019)
|+-||.||..-||...+||+|| +| +++-.++.|.+ +.-+-+--..+..|..+++..+..... ....+++...
T Consensus 493 c~lVIcYd~~snpIrmIQrrGR-gR---a~ns~~vll~t-~~~~~~~E~~~~~~e~lm~~~i~~~q~---~~p~~~~~~i 564 (746)
T KOG0354|consen 493 CNLVICYDYSSNPIRMVQRRGR-GR---ARNSKCVLLTT-GSEVIEFERNNLAKEKLMNQTISKIQL---MLPAEFRPKI 564 (746)
T ss_pred ccEEEEecCCccHHHHHHHhcc-cc---ccCCeEEEEEc-chhHHHHHHHHHhHHHHHHHHHHHHHh---cCHHHHHHHh
Confidence 9999999999999999999999 77 55555666666 443334445567788887776654332 3445555444
No 29
>PTZ00110 helicase; Provisional
Probab=99.96 E-value=1e-26 Score=279.74 Aligned_cols=322 Identities=21% Similarity=0.253 Sum_probs=218.7
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHH-HHHHHHhhc-----CCCCeEEEEeCc-ccHHHHHHHHHHh
Q 001731 302 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQIC-GFLAGLFHS-----RLIKRALVVAPK-TLLSHWIKELTAV 374 (1019)
Q Consensus 302 ~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaI-ali~~l~~~-----~~~~~~LIVvP~-sLl~qW~~E~~k~ 374 (1019)
..++|+|..++..++. ++..|+..+||+|||++.+ .++..+... +....+|||||+ .|..||..++.++
T Consensus 151 ~~pt~iQ~~aip~~l~----G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~ 226 (545)
T PTZ00110 151 TEPTPIQVQGWPIALS----GRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKF 226 (545)
T ss_pred CCCCHHHHHHHHHHhc----CCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHH
Confidence 3578999999987776 8899999999999999853 344444322 122368999998 6778999999998
Q ss_pred cCCCc--EEEEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcch
Q 001731 375 GLSAK--IREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPST 452 (1019)
Q Consensus 375 ~~~~~--v~~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s 452 (1019)
+.... +...++...... .........+|+|+|++.+........ .....+.+|||||||++.....
T Consensus 227 ~~~~~i~~~~~~gg~~~~~--q~~~l~~~~~IlVaTPgrL~d~l~~~~----------~~l~~v~~lViDEAd~mld~gf 294 (545)
T PTZ00110 227 GASSKIRNTVAYGGVPKRG--QIYALRRGVEILIACPGRLIDFLESNV----------TNLRRVTYLVLDEADRMLDMGF 294 (545)
T ss_pred hcccCccEEEEeCCCCHHH--HHHHHHcCCCEEEECHHHHHHHHHcCC----------CChhhCcEEEeehHHhhhhcch
Confidence 76543 333444332222 222334568999999998865543211 1234578999999999976542
Q ss_pred --HHhHHhhcCC-cccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHH
Q 001731 453 --QRAKSLLEIP-SAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKE 529 (1019)
Q Consensus 453 --~~~kal~~l~-~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~~ 529 (1019)
++.+.+..++ ....+++|||.- .++-.+...+... .|+.
T Consensus 295 ~~~i~~il~~~~~~~q~l~~SAT~p----~~v~~l~~~l~~~-------------~~v~--------------------- 336 (545)
T PTZ00110 295 EPQIRKIVSQIRPDRQTLMWSATWP----KEVQSLARDLCKE-------------EPVH--------------------- 336 (545)
T ss_pred HHHHHHHHHhCCCCCeEEEEEeCCC----HHHHHHHHHHhcc-------------CCEE---------------------
Confidence 3344444554 345688999952 1221111110000 0000
Q ss_pred HHHHhHHHHHHhhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcCh
Q 001731 530 LRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHP 609 (1019)
Q Consensus 530 L~~~i~p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP 609 (1019)
-.+... . ..........+..+
T Consensus 337 --------------i~vg~~-~---l~~~~~i~q~~~~~----------------------------------------- 357 (545)
T PTZ00110 337 --------------VNVGSL-D---LTACHNIKQEVFVV----------------------------------------- 357 (545)
T ss_pred --------------EEECCC-c---cccCCCeeEEEEEE-----------------------------------------
Confidence 000000 0 00000000000000
Q ss_pred hhhhhhhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhccCCCceeEecccHHH
Q 001731 610 LLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKM 689 (1019)
Q Consensus 610 ~ll~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ 689 (1019)
....|...|..+|..+...+.++||||+++..
T Consensus 358 ------------------------------------------------~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~ 389 (545)
T PTZ00110 358 ------------------------------------------------EEHEKRGKLKMLLQRIMRDGDKILIFVETKKG 389 (545)
T ss_pred ------------------------------------------------echhHHHHHHHHHHHhcccCCeEEEEecChHH
Confidence 01225556667777766678899999999999
Q ss_pred HHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCCCCCchhhhhhhhh
Q 001731 690 LNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDR 769 (1019)
Q Consensus 690 ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QaiGR 769 (1019)
++.|...|...|+++..+||++++.+|..+++.|+++... +|++|.++++|||++.+++||+||+|+++..|.||+||
T Consensus 390 a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~--ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGR 467 (545)
T PTZ00110 390 ADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSP--IMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGR 467 (545)
T ss_pred HHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCc--EEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcc
Confidence 9999999999999999999999999999999999998755 89999999999999999999999999999999999999
Q ss_pred hhhhCCCCcEEEEEEeeCC
Q 001731 770 AYRIGQKKDVVVYRLMTCG 788 (1019)
Q Consensus 770 a~RiGQ~k~V~VyrLit~g 788 (1019)
++|.|.+-.+ |.|++.+
T Consensus 468 tGR~G~~G~a--i~~~~~~ 484 (545)
T PTZ00110 468 TGRAGAKGAS--YTFLTPD 484 (545)
T ss_pred cccCCCCceE--EEEECcc
Confidence 9999986544 5556654
No 30
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=6.6e-27 Score=277.78 Aligned_cols=310 Identities=16% Similarity=0.165 Sum_probs=211.5
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCc-ccHHHHHHHHHHhcCCCcE
Q 001731 302 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK-TLLSHWIKELTAVGLSAKI 380 (1019)
Q Consensus 302 ~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~-sLl~qW~~E~~k~~~~~~v 380 (1019)
..++|+|.+++.-+.. ++.+++..+||+|||+..+..+ +. ..+.+|||+|. .|+.+|...+..++.. .
T Consensus 10 ~~~r~~Q~~ai~~~l~----g~dvlv~apTGsGKTl~y~lp~--l~---~~~~~lVi~P~~~L~~dq~~~l~~~gi~--~ 78 (470)
T TIGR00614 10 SSFRPVQLEVINAVLL----GRDCFVVMPTGGGKSLCYQLPA--LC---SDGITLVISPLISLMEDQVLQLKASGIP--A 78 (470)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCCcHhHHHHHHH--HH---cCCcEEEEecHHHHHHHHHHHHHHcCCc--E
Confidence 3589999999998876 7789999999999998643222 21 23579999998 7788999999876543 3
Q ss_pred EEEcccccchhhHH-HHH-hhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcchH-----
Q 001731 381 REYFGTCVKTRQYE-LQY-VLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQ----- 453 (1019)
Q Consensus 381 ~~~~g~~~~~~~~~-~~~-~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s~----- 453 (1019)
..+.+......... ... ....++|+++|++.+........... ....+.+|||||||++..+...
T Consensus 79 ~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~--------~~~~i~~iViDEaH~i~~~g~~fr~~~ 150 (470)
T TIGR00614 79 TFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLE--------ERKGITLIAVDEAHCISQWGHDFRPDY 150 (470)
T ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHH--------hcCCcCEEEEeCCcccCccccccHHHH
Confidence 33333322221111 111 22357899999999865432111100 2345789999999999765432
Q ss_pred --HhHHhhcCCcccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHH
Q 001731 454 --RAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELR 531 (1019)
Q Consensus 454 --~~kal~~l~~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~~L~ 531 (1019)
+......++....++|||||-.....++...+.+-.|..+.. .|
T Consensus 151 ~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~------s~---------------------------- 196 (470)
T TIGR00614 151 KALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCT------SF---------------------------- 196 (470)
T ss_pred HHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeC------CC----------------------------
Confidence 122233456677899999997655555555443322211100 00
Q ss_pred HHhHHHHHHhhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcChhh
Q 001731 532 ERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLL 611 (1019)
Q Consensus 532 ~~i~p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~l 611 (1019)
.-|.. ...+.-..
T Consensus 197 -------------------------~r~nl-~~~v~~~~----------------------------------------- 209 (470)
T TIGR00614 197 -------------------------DRPNL-YYEVRRKT----------------------------------------- 209 (470)
T ss_pred -------------------------CCCCc-EEEEEeCC-----------------------------------------
Confidence 00000 00000000
Q ss_pred hhhhhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhccCCCceeEecccHHHHH
Q 001731 612 LTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLN 691 (1019)
Q Consensus 612 l~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ld 691 (1019)
..++..+..++.. ..++.++||||.++...+
T Consensus 210 ------------------------------------------------~~~~~~l~~~l~~-~~~~~~~IIF~~s~~~~e 240 (470)
T TIGR00614 210 ------------------------------------------------PKILEDLLRFIRK-EFKGKSGIIYCPSRKKSE 240 (470)
T ss_pred ------------------------------------------------ccHHHHHHHHHHH-hcCCCceEEEECcHHHHH
Confidence 0011122222222 125667899999999999
Q ss_pred HHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCCCCCchhhhhhhhhhh
Q 001731 692 LIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAY 771 (1019)
Q Consensus 692 iL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QaiGRa~ 771 (1019)
.+...|...|+.+..+||+++..+|..+++.|..+... +|++|.+.|+|||+++++.||+|++|.++..|.|++||++
T Consensus 241 ~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~--vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaG 318 (470)
T TIGR00614 241 QVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQ--VVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAG 318 (470)
T ss_pred HHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCc--EEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcC
Confidence 99999999999999999999999999999999988755 8889999999999999999999999999999999999999
Q ss_pred hhCCCCcEEEE
Q 001731 772 RIGQKKDVVVY 782 (1019)
Q Consensus 772 RiGQ~k~V~Vy 782 (1019)
|.|+...+.+|
T Consensus 319 R~G~~~~~~~~ 329 (470)
T TIGR00614 319 RDGLPSECHLF 329 (470)
T ss_pred CCCCCceEEEE
Confidence 99998877664
No 31
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.95 E-value=2.4e-26 Score=269.88 Aligned_cols=316 Identities=18% Similarity=0.204 Sum_probs=211.8
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHH-HHHHhhcC-------CCCeEEEEeCc-ccHHHHHHHHHH
Q 001731 303 MLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGF-LAGLFHSR-------LIKRALVVAPK-TLLSHWIKELTA 373 (1019)
Q Consensus 303 ~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIal-i~~l~~~~-------~~~~~LIVvP~-sLl~qW~~E~~k 373 (1019)
.+.|+|..++..++. +++.|+..+||+|||++.+.. +..+.... ....+|||||+ .|..||.+++..
T Consensus 30 ~pt~iQ~~aip~il~----g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~ 105 (423)
T PRK04837 30 NCTPIQALALPLTLA----GRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEP 105 (423)
T ss_pred CCCHHHHHHHHHHhC----CCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHH
Confidence 568999999988776 788999999999999985433 33333221 12479999999 667899888887
Q ss_pred hcC--CCcEEEEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcc
Q 001731 374 VGL--SAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPS 451 (1019)
Q Consensus 374 ~~~--~~~v~~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~ 451 (1019)
+.. +..+..++|....... ........+|+|+|++.+....... ......+.+||+||||++....
T Consensus 106 l~~~~~~~v~~~~gg~~~~~~--~~~l~~~~~IlV~TP~~l~~~l~~~----------~~~l~~v~~lViDEad~l~~~~ 173 (423)
T PRK04837 106 LAQATGLKLGLAYGGDGYDKQ--LKVLESGVDILIGTTGRLIDYAKQN----------HINLGAIQVVVLDEADRMFDLG 173 (423)
T ss_pred HhccCCceEEEEECCCCHHHH--HHHhcCCCCEEEECHHHHHHHHHcC----------CcccccccEEEEecHHHHhhcc
Confidence 654 3445555554332222 2223345799999999987654321 1224457899999999986543
Q ss_pred --hHHhHHhhcCCc---ccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHH
Q 001731 452 --TQRAKSLLEIPS---AHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAV 526 (1019)
Q Consensus 452 --s~~~kal~~l~~---~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~ 526 (1019)
......+..++. ...+++|||.-. .+.++.. .++ ..|...
T Consensus 174 f~~~i~~i~~~~~~~~~~~~~l~SAT~~~-~~~~~~~--~~~---------------~~p~~i----------------- 218 (423)
T PRK04837 174 FIKDIRWLFRRMPPANQRLNMLFSATLSY-RVRELAF--EHM---------------NNPEYV----------------- 218 (423)
T ss_pred cHHHHHHHHHhCCCccceeEEEEeccCCH-HHHHHHH--HHC---------------CCCEEE-----------------
Confidence 223333444432 334788999631 1111100 000 000000
Q ss_pred HHHHHHHhHHHHHHhhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHh
Q 001731 527 AKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKIC 606 (1019)
Q Consensus 527 ~~~L~~~i~p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic 606 (1019)
.+.. ...........++.
T Consensus 219 ------------------~v~~------~~~~~~~i~~~~~~-------------------------------------- 236 (423)
T PRK04837 219 ------------------EVEP------EQKTGHRIKEELFY-------------------------------------- 236 (423)
T ss_pred ------------------EEcC------CCcCCCceeEEEEe--------------------------------------
Confidence 0000 00000000000000
Q ss_pred cChhhhhhhhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhccCCCceeEeccc
Q 001731 607 DHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQT 686 (1019)
Q Consensus 607 ~hP~ll~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~ 686 (1019)
.....|+..|..++... ...++||||+.
T Consensus 237 --------------------------------------------------~~~~~k~~~l~~ll~~~--~~~~~lVF~~t 264 (423)
T PRK04837 237 --------------------------------------------------PSNEEKMRLLQTLIEEE--WPDRAIIFANT 264 (423)
T ss_pred --------------------------------------------------CCHHHHHHHHHHHHHhc--CCCeEEEEECC
Confidence 00122555566666542 46789999999
Q ss_pred HHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCCCCCchhhhhh
Q 001731 687 RKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQS 766 (1019)
Q Consensus 687 ~~~ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~Qa 766 (1019)
+..++.+...|...|+++..++|+++..+|.++++.|+++... +|++|.++++|||++++++||+||+|+++..|.||
T Consensus 265 ~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~--vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR 342 (423)
T PRK04837 265 KHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLD--ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHR 342 (423)
T ss_pred HHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCc--EEEEechhhcCCCccccCEEEEeCCCCchhheEec
Confidence 9999999999999999999999999999999999999999865 89999999999999999999999999999999999
Q ss_pred hhhhhhhCCCCcEEEEEEeeC
Q 001731 767 VDRAYRIGQKKDVVVYRLMTC 787 (1019)
Q Consensus 767 iGRa~RiGQ~k~V~VyrLit~ 787 (1019)
+||++|.|+.-.+ +.|++.
T Consensus 343 ~GR~gR~G~~G~a--i~~~~~ 361 (423)
T PRK04837 343 IGRTGRAGASGHS--ISLACE 361 (423)
T ss_pred cccccCCCCCeeE--EEEeCH
Confidence 9999999977544 444543
No 32
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.95 E-value=3.2e-26 Score=271.06 Aligned_cols=313 Identities=17% Similarity=0.250 Sum_probs=207.9
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHH-HHHHHhhcC------CCCeEEEEeCc-ccHHHHHHHHHH
Q 001731 302 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICG-FLAGLFHSR------LIKRALVVAPK-TLLSHWIKELTA 373 (1019)
Q Consensus 302 ~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIa-li~~l~~~~------~~~~~LIVvP~-sLl~qW~~E~~k 373 (1019)
..++|+|..++..+.. +++.|+..+||+|||+..+. ++..+.... ...++|||||+ .|..||..++..
T Consensus 22 ~~pt~iQ~~ai~~il~----g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~ 97 (456)
T PRK10590 22 REPTPIQQQAIPAVLE----GRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRD 97 (456)
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHH
Confidence 3578999999988776 78899999999999998544 344433221 11369999998 677899999988
Q ss_pred hcCC--CcEEEEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcc
Q 001731 374 VGLS--AKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPS 451 (1019)
Q Consensus 374 ~~~~--~~v~~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~ 451 (1019)
+... ..+....|...... ........++|+|+|++.+........ .....+++|||||||++....
T Consensus 98 ~~~~~~~~~~~~~gg~~~~~--~~~~l~~~~~IiV~TP~rL~~~~~~~~----------~~l~~v~~lViDEah~ll~~~ 165 (456)
T PRK10590 98 YSKYLNIRSLVVFGGVSINP--QMMKLRGGVDVLVATPGRLLDLEHQNA----------VKLDQVEILVLDEADRMLDMG 165 (456)
T ss_pred HhccCCCEEEEEECCcCHHH--HHHHHcCCCcEEEEChHHHHHHHHcCC----------cccccceEEEeecHHHHhccc
Confidence 7543 33444444332222 222344578999999999865433211 123457899999999986543
Q ss_pred h--HHhHHhhcCCcc-cEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHH
Q 001731 452 T--QRAKSLLEIPSA-HRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAK 528 (1019)
Q Consensus 452 s--~~~kal~~l~~~-~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~ 528 (1019)
. .+...+..++.. ..+++|||+-. .+.++ ...+ +..|...
T Consensus 166 ~~~~i~~il~~l~~~~q~l~~SAT~~~-~~~~l---~~~~--------------~~~~~~i------------------- 208 (456)
T PRK10590 166 FIHDIRRVLAKLPAKRQNLLFSATFSD-DIKAL---AEKL--------------LHNPLEI------------------- 208 (456)
T ss_pred cHHHHHHHHHhCCccCeEEEEeCCCcH-HHHHH---HHHH--------------cCCCeEE-------------------
Confidence 2 233344445443 46899999732 11111 1110 0000000
Q ss_pred HHHHHhHHHHHHhhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcC
Q 001731 529 ELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDH 608 (1019)
Q Consensus 529 ~L~~~i~p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~h 608 (1019)
.+... ....+.....+.++.
T Consensus 209 ----------------~~~~~-----~~~~~~i~~~~~~~~--------------------------------------- 228 (456)
T PRK10590 209 ----------------EVARR-----NTASEQVTQHVHFVD--------------------------------------- 228 (456)
T ss_pred ----------------EEecc-----cccccceeEEEEEcC---------------------------------------
Confidence 00000 000000000111110
Q ss_pred hhhhhhhhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhccCCCceeEecccHH
Q 001731 609 PLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRK 688 (1019)
Q Consensus 609 P~ll~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~ 688 (1019)
...|...|..++.. ....++||||.++.
T Consensus 229 --------------------------------------------------~~~k~~~l~~l~~~--~~~~~~lVF~~t~~ 256 (456)
T PRK10590 229 --------------------------------------------------KKRKRELLSQMIGK--GNWQQVLVFTRTKH 256 (456)
T ss_pred --------------------------------------------------HHHHHHHHHHHHHc--CCCCcEEEEcCcHH
Confidence 00122223333322 24568999999999
Q ss_pred HHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCCCCCchhhhhhhh
Q 001731 689 MLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVD 768 (1019)
Q Consensus 689 ~ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QaiG 768 (1019)
..+.|...|...|+.+..+||+++..+|.++++.|+++... +|++|.++++|||++++++||+||+|+++..|.|++|
T Consensus 257 ~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~--iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~G 334 (456)
T PRK10590 257 GANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR--VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIG 334 (456)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCc--EEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhcc
Confidence 99999999999999999999999999999999999998755 8889999999999999999999999999999999999
Q ss_pred hhhhhCCCCcEEE
Q 001731 769 RAYRIGQKKDVVV 781 (1019)
Q Consensus 769 Ra~RiGQ~k~V~V 781 (1019)
|++|.|.+..+++
T Consensus 335 RaGR~g~~G~ai~ 347 (456)
T PRK10590 335 RTGRAAATGEALS 347 (456)
T ss_pred ccccCCCCeeEEE
Confidence 9999998765443
No 33
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.95 E-value=5.6e-26 Score=269.66 Aligned_cols=317 Identities=19% Similarity=0.259 Sum_probs=216.9
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHH-HHHHHHhhcCCCCeEEEEeCc-ccHHHHHHHHHHhc---C
Q 001731 302 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQIC-GFLAGLFHSRLIKRALVVAPK-TLLSHWIKELTAVG---L 376 (1019)
Q Consensus 302 ~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaI-ali~~l~~~~~~~~~LIVvP~-sLl~qW~~E~~k~~---~ 376 (1019)
..+.|+|.+++..+.. ++..|+..+||+|||++.+ +++..+........+||+||+ .|..||.+++..++ +
T Consensus 25 ~~~t~iQ~~ai~~~l~----g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~ 100 (460)
T PRK11776 25 TEMTPIQAQSLPAILA----GKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIP 100 (460)
T ss_pred CCCCHHHHHHHHHHhc----CCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCC
Confidence 3588999999998876 7889999999999998744 444443322223479999999 67789999988764 3
Q ss_pred CCcEEEEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcc--hHH
Q 001731 377 SAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPS--TQR 454 (1019)
Q Consensus 377 ~~~v~~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~--s~~ 454 (1019)
+..+..++|....... ........+|+|+|++.+........ .....+.+||+||||++.... ...
T Consensus 101 ~~~v~~~~Gg~~~~~~--~~~l~~~~~IvV~Tp~rl~~~l~~~~----------~~l~~l~~lViDEad~~l~~g~~~~l 168 (460)
T PRK11776 101 NIKVLTLCGGVPMGPQ--IDSLEHGAHIIVGTPGRILDHLRKGT----------LDLDALNTLVLDEADRMLDMGFQDAI 168 (460)
T ss_pred CcEEEEEECCCChHHH--HHHhcCCCCEEEEChHHHHHHHHcCC----------ccHHHCCEEEEECHHHHhCcCcHHHH
Confidence 5566666665433222 22333567999999999876543211 123457899999999986643 223
Q ss_pred hHHhhcCCc-ccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHHHH
Q 001731 455 AKSLLEIPS-AHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRER 533 (1019)
Q Consensus 455 ~kal~~l~~-~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~~L~~~ 533 (1019)
...+..++. ...+++|||+-. ++-.+.... ...|...
T Consensus 169 ~~i~~~~~~~~q~ll~SAT~~~----~~~~l~~~~--------------~~~~~~i------------------------ 206 (460)
T PRK11776 169 DAIIRQAPARRQTLLFSATYPE----GIAAISQRF--------------QRDPVEV------------------------ 206 (460)
T ss_pred HHHHHhCCcccEEEEEEecCcH----HHHHHHHHh--------------cCCCEEE------------------------
Confidence 344445543 446889999731 111111100 0000000
Q ss_pred hHHHHHHhhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcChhhhh
Q 001731 534 IQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLT 613 (1019)
Q Consensus 534 i~p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~ll~ 613 (1019)
.+ .. ....+......+.+.
T Consensus 207 -----------~~-~~-----~~~~~~i~~~~~~~~-------------------------------------------- 225 (460)
T PRK11776 207 -----------KV-ES-----THDLPAIEQRFYEVS-------------------------------------------- 225 (460)
T ss_pred -----------EE-Cc-----CCCCCCeeEEEEEeC--------------------------------------------
Confidence 00 00 000011111111110
Q ss_pred hhhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhccCCCceeEecccHHHHHHH
Q 001731 614 KRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLI 693 (1019)
Q Consensus 614 ~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL 693 (1019)
...|+..|..++... .+.++||||+++..++.+
T Consensus 226 ---------------------------------------------~~~k~~~l~~ll~~~--~~~~~lVF~~t~~~~~~l 258 (460)
T PRK11776 226 ---------------------------------------------PDERLPALQRLLLHH--QPESCVVFCNTKKECQEV 258 (460)
T ss_pred ---------------------------------------------cHHHHHHHHHHHHhc--CCCceEEEECCHHHHHHH
Confidence 111555566666543 456899999999999999
Q ss_pred HHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCCCCCchhhhhhhhhhhhh
Q 001731 694 QESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRI 773 (1019)
Q Consensus 694 ~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QaiGRa~Ri 773 (1019)
...|...|+.+..+||++++.+|..+++.|+++... +|++|.++++|||++++++||+||+|.++..|.||+||++|.
T Consensus 259 ~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~--vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~ 336 (460)
T PRK11776 259 ADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCS--VLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRA 336 (460)
T ss_pred HHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCc--EEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCC
Confidence 999999999999999999999999999999998755 888999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEEeeCC
Q 001731 774 GQKKDVVVYRLMTCG 788 (1019)
Q Consensus 774 GQ~k~V~VyrLit~g 788 (1019)
|+.-. .|.|++..
T Consensus 337 g~~G~--ai~l~~~~ 349 (460)
T PRK11776 337 GSKGL--ALSLVAPE 349 (460)
T ss_pred CCcce--EEEEEchh
Confidence 97644 45566553
No 34
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.95 E-value=5.5e-26 Score=272.56 Aligned_cols=318 Identities=17% Similarity=0.225 Sum_probs=214.8
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHH-HHHHHhhc-------CCCCeEEEEeCc-ccHHHHHHHHH
Q 001731 302 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICG-FLAGLFHS-------RLIKRALVVAPK-TLLSHWIKELT 372 (1019)
Q Consensus 302 ~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIa-li~~l~~~-------~~~~~~LIVvP~-sLl~qW~~E~~ 372 (1019)
..++|+|..++..+.. ++..|+..+||+|||+..+. ++..+... .....+|||+|+ .|..|+..++.
T Consensus 142 ~~ptpiQ~~aip~il~----g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~ 217 (518)
T PLN00206 142 EFPTPIQMQAIPAALS----GRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAK 217 (518)
T ss_pred CCCCHHHHHHHHHHhc----CCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHH
Confidence 4678999999988876 78999999999999998543 44433221 123479999998 56788888888
Q ss_pred HhcCCC--cEEEEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCc
Q 001731 373 AVGLSA--KIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNP 450 (1019)
Q Consensus 373 k~~~~~--~v~~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~ 450 (1019)
.+.... ++....|...... .........+|+|+|++.+....... ........+||+||||++...
T Consensus 218 ~l~~~~~~~~~~~~gG~~~~~--q~~~l~~~~~IiV~TPgrL~~~l~~~----------~~~l~~v~~lViDEad~ml~~ 285 (518)
T PLN00206 218 VLGKGLPFKTALVVGGDAMPQ--QLYRIQQGVELIVGTPGRLIDLLSKH----------DIELDNVSVLVLDEVDCMLER 285 (518)
T ss_pred HHhCCCCceEEEEECCcchHH--HHHHhcCCCCEEEECHHHHHHHHHcC----------CccchheeEEEeecHHHHhhc
Confidence 776543 3333344332222 22334456899999999886554321 112345789999999998654
Q ss_pred c--hHHhHHhhcCCcccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHH
Q 001731 451 S--TQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAK 528 (1019)
Q Consensus 451 ~--s~~~kal~~l~~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~ 528 (1019)
+ ......+..++....+++|||.-. .+.. +...+... ++
T Consensus 286 gf~~~i~~i~~~l~~~q~l~~SATl~~-~v~~---l~~~~~~~--------------~~--------------------- 326 (518)
T PLN00206 286 GFRDQVMQIFQALSQPQVLLFSATVSP-EVEK---FASSLAKD--------------II--------------------- 326 (518)
T ss_pred chHHHHHHHHHhCCCCcEEEEEeeCCH-HHHH---HHHHhCCC--------------CE---------------------
Confidence 3 334455566677788999999732 1111 11111000 00
Q ss_pred HHHHHhHHHHHHhhhhcccccCccccccccCc--cceEEEEEcCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHh
Q 001731 529 ELRERIQPYFLRRLKNEVFHEDDVTSSATLSK--KNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKIC 606 (1019)
Q Consensus 529 ~L~~~i~p~~lRR~k~dv~~~~~~~~~~~LP~--k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic 606 (1019)
.+... ....+. .....+++.-
T Consensus 327 -----------------~i~~~----~~~~~~~~v~q~~~~~~~------------------------------------ 349 (518)
T PLN00206 327 -----------------LISIG----NPNRPNKAVKQLAIWVET------------------------------------ 349 (518)
T ss_pred -----------------EEEeC----CCCCCCcceeEEEEeccc------------------------------------
Confidence 00000 000000 0111122210
Q ss_pred cChhhhhhhhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhccCCCceeEeccc
Q 001731 607 DHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQT 686 (1019)
Q Consensus 607 ~hP~ll~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~ 686 (1019)
..|...|.++|........++|||+.+
T Consensus 350 -----------------------------------------------------~~k~~~l~~~l~~~~~~~~~~iVFv~s 376 (518)
T PLN00206 350 -----------------------------------------------------KQKKQKLFDILKSKQHFKPPAVVFVSS 376 (518)
T ss_pred -----------------------------------------------------hhHHHHHHHHHHhhcccCCCEEEEcCC
Confidence 113334444554443345689999999
Q ss_pred HHHHHHHHHHHhh-cCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCCCCCchhhhh
Q 001731 687 RKMLNLIQESIGS-KGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQ 765 (1019)
Q Consensus 687 ~~~ldiL~~~L~~-~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~Q 765 (1019)
+..++.+...|.. .|+++..+||+++..+|..+++.|.++... +|++|.++++|||++.+++||+||+|.++..|.|
T Consensus 377 ~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~--ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yih 454 (518)
T PLN00206 377 RLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVP--VIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIH 454 (518)
T ss_pred chhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCC--EEEEecHhhccCCcccCCEEEEeCCCCCHHHHHH
Confidence 9999999999975 699999999999999999999999998865 8899999999999999999999999999999999
Q ss_pred hhhhhhhhCCCCcEEEEEEeeCC
Q 001731 766 SVDRAYRIGQKKDVVVYRLMTCG 788 (1019)
Q Consensus 766 aiGRa~RiGQ~k~V~VyrLit~g 788 (1019)
|+||++|.|..-. +|.|++.+
T Consensus 455 RiGRaGR~g~~G~--ai~f~~~~ 475 (518)
T PLN00206 455 QIGRASRMGEKGT--AIVFVNEE 475 (518)
T ss_pred hccccccCCCCeE--EEEEEchh
Confidence 9999999997543 44455543
No 35
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.95 E-value=8.4e-26 Score=266.35 Aligned_cols=315 Identities=17% Similarity=0.203 Sum_probs=210.7
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHH-HHHHhhc----CCCCeEEEEeCc-ccHHHHHHHHHHhc
Q 001731 302 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGF-LAGLFHS----RLIKRALVVAPK-TLLSHWIKELTAVG 375 (1019)
Q Consensus 302 ~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIal-i~~l~~~----~~~~~~LIVvP~-sLl~qW~~E~~k~~ 375 (1019)
..++|+|.+++..++. +++.|+..+||+|||++++.. +..+... ....++||++|+ .|..||.+.+..+.
T Consensus 22 ~~p~~iQ~~ai~~~~~----g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~ 97 (434)
T PRK11192 22 TRPTAIQAEAIPPALD----GRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELA 97 (434)
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHH
Confidence 3578999999988876 778999999999999885543 3333221 123479999998 56788888888775
Q ss_pred CC--CcEEEEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcc--
Q 001731 376 LS--AKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPS-- 451 (1019)
Q Consensus 376 ~~--~~v~~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~-- 451 (1019)
.. ..+..+.|....... ........+|+|+|++.+........ +....+++||+||||++....
T Consensus 98 ~~~~~~v~~~~gg~~~~~~--~~~l~~~~~IlV~Tp~rl~~~~~~~~----------~~~~~v~~lViDEah~~l~~~~~ 165 (434)
T PRK11192 98 KHTHLDIATITGGVAYMNH--AEVFSENQDIVVATPGRLLQYIKEEN----------FDCRAVETLILDEADRMLDMGFA 165 (434)
T ss_pred ccCCcEEEEEECCCCHHHH--HHHhcCCCCEEEEChHHHHHHHHcCC----------cCcccCCEEEEECHHHHhCCCcH
Confidence 43 445555554333222 22233567899999998876543211 123457899999999986543
Q ss_pred hHHhHHhhcCC-cccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHH
Q 001731 452 TQRAKSLLEIP-SAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKEL 530 (1019)
Q Consensus 452 s~~~kal~~l~-~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~~L 530 (1019)
......+..++ ....+++|||+-...+.++... +. ..|+..
T Consensus 166 ~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~---~~--------------~~~~~i--------------------- 207 (434)
T PRK11192 166 QDIETIAAETRWRKQTLLFSATLEGDAVQDFAER---LL--------------NDPVEV--------------------- 207 (434)
T ss_pred HHHHHHHHhCccccEEEEEEeecCHHHHHHHHHH---Hc--------------cCCEEE---------------------
Confidence 22222223333 2345889999843222221110 00 000000
Q ss_pred HHHhHHHHHHhhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcChh
Q 001731 531 RERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPL 610 (1019)
Q Consensus 531 ~~~i~p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~ 610 (1019)
.+. + ...........+..
T Consensus 208 --------------~~~---~---~~~~~~~i~~~~~~------------------------------------------ 225 (434)
T PRK11192 208 --------------EAE---P---SRRERKKIHQWYYR------------------------------------------ 225 (434)
T ss_pred --------------Eec---C---CcccccCceEEEEE------------------------------------------
Confidence 000 0 00000000000000
Q ss_pred hhhhhhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhccCCCceeEecccHHHH
Q 001731 611 LLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKML 690 (1019)
Q Consensus 611 ll~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~l 690 (1019)
......|...|..++.. ....++||||.++..+
T Consensus 226 ---------------------------------------------~~~~~~k~~~l~~l~~~--~~~~~~lVF~~s~~~~ 258 (434)
T PRK11192 226 ---------------------------------------------ADDLEHKTALLCHLLKQ--PEVTRSIVFVRTRERV 258 (434)
T ss_pred ---------------------------------------------eCCHHHHHHHHHHHHhc--CCCCeEEEEeCChHHH
Confidence 00012255555555543 2457899999999999
Q ss_pred HHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCCCCCchhhhhhhhhh
Q 001731 691 NLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRA 770 (1019)
Q Consensus 691 diL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QaiGRa 770 (1019)
+.|...|...|+.+..++|+++..+|..+++.|+++... +|++|.++++|||++.+++||+||+|+++..|.||+||+
T Consensus 259 ~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~--vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~ 336 (434)
T PRK11192 259 HELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVN--VLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRT 336 (434)
T ss_pred HHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCc--EEEEccccccCccCCCCCEEEEECCCCCHHHHhhccccc
Confidence 999999999999999999999999999999999998765 889999999999999999999999999999999999999
Q ss_pred hhhCCCCcEEE
Q 001731 771 YRIGQKKDVVV 781 (1019)
Q Consensus 771 ~RiGQ~k~V~V 781 (1019)
+|.|....+.+
T Consensus 337 gR~g~~g~ai~ 347 (434)
T PRK11192 337 GRAGRKGTAIS 347 (434)
T ss_pred ccCCCCceEEE
Confidence 99998765544
No 36
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.95 E-value=8.3e-26 Score=272.91 Aligned_cols=314 Identities=19% Similarity=0.266 Sum_probs=211.7
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHH-HHHHhhcC-------CCCeEEEEeCc-ccHHHHHHHHH
Q 001731 302 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGF-LAGLFHSR-------LIKRALVVAPK-TLLSHWIKELT 372 (1019)
Q Consensus 302 ~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIal-i~~l~~~~-------~~~~~LIVvP~-sLl~qW~~E~~ 372 (1019)
..++|+|..++..++. +++.|+..+||+|||+..+.. +..+.... ...++|||||+ .|..|+.+.+.
T Consensus 30 ~~ptpiQ~~~ip~~l~----G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~ 105 (572)
T PRK04537 30 TRCTPIQALTLPVALP----GGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAV 105 (572)
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHH
Confidence 3578999999998877 888999999999999985543 33333211 12489999999 67789999998
Q ss_pred HhcCCC--cEEEEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCc
Q 001731 373 AVGLSA--KIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNP 450 (1019)
Q Consensus 373 k~~~~~--~v~~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~ 450 (1019)
+++... .+..++|....... ........+|+|+|++.+......... +....+.+|||||||++...
T Consensus 106 ~l~~~~~i~v~~l~Gg~~~~~q--~~~l~~~~dIiV~TP~rL~~~l~~~~~---------~~l~~v~~lViDEAh~lld~ 174 (572)
T PRK04537 106 KFGADLGLRFALVYGGVDYDKQ--RELLQQGVDVIIATPGRLIDYVKQHKV---------VSLHACEICVLDEADRMFDL 174 (572)
T ss_pred HHhccCCceEEEEECCCCHHHH--HHHHhCCCCEEEECHHHHHHHHHhccc---------cchhheeeeEecCHHHHhhc
Confidence 886544 34445554332222 222334679999999998765432110 12334688999999998653
Q ss_pred c--hHHhHHhhcCC---cccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHH
Q 001731 451 S--TQRAKSLLEIP---SAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSA 525 (1019)
Q Consensus 451 ~--s~~~kal~~l~---~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~ 525 (1019)
. ..+...+..++ ....+++|||.-. .+.++... ++ ..|.
T Consensus 175 gf~~~i~~il~~lp~~~~~q~ll~SATl~~-~v~~l~~~--~l---------------~~p~------------------ 218 (572)
T PRK04537 175 GFIKDIRFLLRRMPERGTRQTLLFSATLSH-RVLELAYE--HM---------------NEPE------------------ 218 (572)
T ss_pred chHHHHHHHHHhcccccCceEEEEeCCccH-HHHHHHHH--Hh---------------cCCc------------------
Confidence 3 22333344444 3456889999632 11111100 00 0000
Q ss_pred HHHHHHHHhHHHHHHhhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHH
Q 001731 526 VAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKI 605 (1019)
Q Consensus 526 ~~~~L~~~i~p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrki 605 (1019)
..+... ....+......+++.
T Consensus 219 ------------------~i~v~~-----~~~~~~~i~q~~~~~------------------------------------ 239 (572)
T PRK04537 219 ------------------KLVVET-----ETITAARVRQRIYFP------------------------------------ 239 (572)
T ss_pred ------------------EEEecc-----ccccccceeEEEEec------------------------------------
Confidence 000000 000000000000000
Q ss_pred hcChhhhhhhhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhccCCCceeEecc
Q 001731 606 CDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQ 685 (1019)
Q Consensus 606 c~hP~ll~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq 685 (1019)
....|+..|..++.. ..+.++||||.
T Consensus 240 ----------------------------------------------------~~~~k~~~L~~ll~~--~~~~k~LVF~n 265 (572)
T PRK04537 240 ----------------------------------------------------ADEEKQTLLLGLLSR--SEGARTMVFVN 265 (572)
T ss_pred ----------------------------------------------------CHHHHHHHHHHHHhc--ccCCcEEEEeC
Confidence 011244555555543 25779999999
Q ss_pred cHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCCCCCchhhhh
Q 001731 686 TRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQ 765 (1019)
Q Consensus 686 ~~~~ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~Q 765 (1019)
++..++.|...|...|+.+..+||.++..+|.++++.|+++... +||+|+++++|||++.+++||+||.||++..|.|
T Consensus 266 t~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~--VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvq 343 (572)
T PRK04537 266 TKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLE--ILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVH 343 (572)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCe--EEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhh
Confidence 99999999999999999999999999999999999999998755 8999999999999999999999999999999999
Q ss_pred hhhhhhhhCCCCcEEE
Q 001731 766 SVDRAYRIGQKKDVVV 781 (1019)
Q Consensus 766 aiGRa~RiGQ~k~V~V 781 (1019)
++||++|.|....+++
T Consensus 344 RiGRaGR~G~~G~ai~ 359 (572)
T PRK04537 344 RIGRTARLGEEGDAIS 359 (572)
T ss_pred hhcccccCCCCceEEE
Confidence 9999999998765543
No 37
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.94 E-value=1.9e-25 Score=266.02 Aligned_cols=312 Identities=20% Similarity=0.281 Sum_probs=208.5
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHH-HHHHHHhhcCC-------CCeEEEEeCc-ccHHHHHHHHH
Q 001731 302 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQIC-GFLAGLFHSRL-------IKRALVVAPK-TLLSHWIKELT 372 (1019)
Q Consensus 302 ~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaI-ali~~l~~~~~-------~~~~LIVvP~-sLl~qW~~E~~ 372 (1019)
..++|||.+++..++. |+..|++.+||+|||+..+ .++..+..... ..++|||+|+ .|..||.+.+.
T Consensus 108 ~~~~~iQ~~ai~~~~~----G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~ 183 (475)
T PRK01297 108 PYCTPIQAQVLGYTLA----GHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAA 183 (475)
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHH
Confidence 3589999999987776 8889999999999998744 44444443221 3479999998 67789999888
Q ss_pred HhcC--CCcEEEEcccccchhhHHHHHh-hhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCC
Q 001731 373 AVGL--SAKIREYFGTCVKTRQYELQYV-LQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKN 449 (1019)
Q Consensus 373 k~~~--~~~v~~~~g~~~~~~~~~~~~~-~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN 449 (1019)
.+.. +..+..+.|....... .... ....+|+|+|++++........ .....+.+|||||||++.+
T Consensus 184 ~l~~~~~~~v~~~~gg~~~~~~--~~~~~~~~~~Iiv~TP~~Ll~~~~~~~----------~~l~~l~~lViDEah~l~~ 251 (475)
T PRK01297 184 ALTKYTGLNVMTFVGGMDFDKQ--LKQLEARFCDILVATPGRLLDFNQRGE----------VHLDMVEVMVLDEADRMLD 251 (475)
T ss_pred HhhccCCCEEEEEEccCChHHH--HHHHhCCCCCEEEECHHHHHHHHHcCC----------cccccCceEEechHHHHHh
Confidence 7754 3445555554332221 1112 2457999999999865432211 1234568999999999976
Q ss_pred cch--HHhHHhhcCC---cccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhH
Q 001731 450 PST--QRAKSLLEIP---SAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGS 524 (1019)
Q Consensus 450 ~~s--~~~kal~~l~---~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~ 524 (1019)
... .....+..++ ....+++|||... ++.++...+ + ..|...
T Consensus 252 ~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~-~~~~~~~~~--~---------------~~~~~v--------------- 298 (475)
T PRK01297 252 MGFIPQVRQIIRQTPRKEERQTLLFSATFTD-DVMNLAKQW--T---------------TDPAIV--------------- 298 (475)
T ss_pred cccHHHHHHHHHhCCCCCCceEEEEEeecCH-HHHHHHHHh--c---------------cCCEEE---------------
Confidence 432 2333334442 2457889999632 222211110 0 000000
Q ss_pred HHHHHHHHHhHHHHHHhhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHH
Q 001731 525 AVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKK 604 (1019)
Q Consensus 525 ~~~~~L~~~i~p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrk 604 (1019)
.+... .. ........+++.
T Consensus 299 --------------------~~~~~-----~~-~~~~~~~~~~~~----------------------------------- 317 (475)
T PRK01297 299 --------------------EIEPE-----NV-ASDTVEQHVYAV----------------------------------- 317 (475)
T ss_pred --------------------EeccC-----cC-CCCcccEEEEEe-----------------------------------
Confidence 00000 00 000000000000
Q ss_pred HhcChhhhhhhhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhccCCCceeEec
Q 001731 605 ICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFS 684 (1019)
Q Consensus 605 ic~hP~ll~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFs 684 (1019)
..+.|...|..++.. ....++||||
T Consensus 318 -----------------------------------------------------~~~~k~~~l~~ll~~--~~~~~~IVF~ 342 (475)
T PRK01297 318 -----------------------------------------------------AGSDKYKLLYNLVTQ--NPWERVMVFA 342 (475)
T ss_pred -----------------------------------------------------cchhHHHHHHHHHHh--cCCCeEEEEe
Confidence 012234444444443 2456899999
Q ss_pred ccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCCCCCchhhh
Q 001731 685 QTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDN 764 (1019)
Q Consensus 685 q~~~~ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~ 764 (1019)
+++..++.|...|...|+.+..++|+++..+|.++++.|+++... +|++|.++++|||+.++++||+||+|+++..|+
T Consensus 343 ~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~--vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~ 420 (475)
T PRK01297 343 NRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIR--VLVATDVAGRGIHIDGISHVINFTLPEDPDDYV 420 (475)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCc--EEEEccccccCCcccCCCEEEEeCCCCCHHHHH
Confidence 999999999999999999999999999999999999999998855 888999999999999999999999999999999
Q ss_pred hhhhhhhhhCCCCcEE
Q 001731 765 QSVDRAYRIGQKKDVV 780 (1019)
Q Consensus 765 QaiGRa~RiGQ~k~V~ 780 (1019)
|++||++|.|+...++
T Consensus 421 Qr~GRaGR~g~~g~~i 436 (475)
T PRK01297 421 HRIGRTGRAGASGVSI 436 (475)
T ss_pred HhhCccCCCCCCceEE
Confidence 9999999999865443
No 38
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.94 E-value=2e-25 Score=272.51 Aligned_cols=304 Identities=19% Similarity=0.215 Sum_probs=211.6
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCc-ccHHHHHHHHHHhcCCCcEE
Q 001731 303 MLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK-TLLSHWIKELTAVGLSAKIR 381 (1019)
Q Consensus 303 ~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~-sLl~qW~~E~~k~~~~~~v~ 381 (1019)
.++|+|.+++.-++. ++..+++.+||.|||+.+... .+. ..+.+|||+|. +|+.++...+...+ ..+.
T Consensus 13 ~fr~~Q~~~i~~il~----g~dvlv~~PTG~GKTl~y~lp--al~---~~g~~lVisPl~sL~~dq~~~l~~~g--i~~~ 81 (591)
T TIGR01389 13 DFRPGQEEIISHVLD----GRDVLVVMPTGGGKSLCYQVP--ALL---LKGLTVVISPLISLMKDQVDQLRAAG--VAAA 81 (591)
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEcCCCccHhHHHHHH--HHH---cCCcEEEEcCCHHHHHHHHHHHHHcC--CcEE
Confidence 589999999988876 788999999999999875422 222 23578999998 78899999998864 3343
Q ss_pred EEcccccchhhHH-HHH-hhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcch-------
Q 001731 382 EYFGTCVKTRQYE-LQY-VLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPST------- 452 (1019)
Q Consensus 382 ~~~g~~~~~~~~~-~~~-~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s------- 452 (1019)
.+.+......... ... ..+..+++++|++.+....-.. .+....+.+|||||||++..+..
T Consensus 82 ~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~----------~l~~~~l~~iViDEaH~i~~~g~~frp~y~ 151 (591)
T TIGR01389 82 YLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLN----------MLQRIPIALVAVDEAHCVSQWGHDFRPEYQ 151 (591)
T ss_pred EEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHH----------HHhcCCCCEEEEeCCcccccccCccHHHHH
Confidence 3444332222211 111 2346789999999885432110 01234679999999999965442
Q ss_pred HHhHHhhcCCcccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHHH
Q 001731 453 QRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRE 532 (1019)
Q Consensus 453 ~~~kal~~l~~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~~L~~ 532 (1019)
+.......++....++||||+......++...+.+-.+..+ ...|
T Consensus 152 ~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~------~~~~----------------------------- 196 (591)
T TIGR01389 152 RLGSLAERFPQVPRIALTATADAETRQDIRELLRLADANEF------ITSF----------------------------- 196 (591)
T ss_pred HHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeE------ecCC-----------------------------
Confidence 22333344556668999999976555555544432211110 0000
Q ss_pred HhHHHHHHhhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcChhhh
Q 001731 533 RIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLL 612 (1019)
Q Consensus 533 ~i~p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~ll 612 (1019)
..|.....++ .
T Consensus 197 ------------------------~r~nl~~~v~--~------------------------------------------- 207 (591)
T TIGR01389 197 ------------------------DRPNLRFSVV--K------------------------------------------- 207 (591)
T ss_pred ------------------------CCCCcEEEEE--e-------------------------------------------
Confidence 0000000000 0
Q ss_pred hhhhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhccCCCceeEecccHHHHHH
Q 001731 613 TKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNL 692 (1019)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldi 692 (1019)
...+...+..++... .+.++||||.++...+.
T Consensus 208 ----------------------------------------------~~~~~~~l~~~l~~~--~~~~~IIf~~sr~~~e~ 239 (591)
T TIGR01389 208 ----------------------------------------------KNNKQKFLLDYLKKH--RGQSGIIYASSRKKVEE 239 (591)
T ss_pred ----------------------------------------------CCCHHHHHHHHHHhc--CCCCEEEEECcHHHHHH
Confidence 011223344444433 36789999999999999
Q ss_pred HHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCCCCCchhhhhhhhhhhh
Q 001731 693 IQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYR 772 (1019)
Q Consensus 693 L~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QaiGRa~R 772 (1019)
+...|...|+++..+||+++.++|..+++.|..+... +|++|.++|+|||++.++.||+|++|+|+..|.|++||++|
T Consensus 240 la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~--vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR 317 (591)
T TIGR01389 240 LAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVK--VMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGR 317 (591)
T ss_pred HHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCc--EEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccC
Confidence 9999999999999999999999999999999998754 89999999999999999999999999999999999999999
Q ss_pred hCCCCcEEE
Q 001731 773 IGQKKDVVV 781 (1019)
Q Consensus 773 iGQ~k~V~V 781 (1019)
.|+...+.+
T Consensus 318 ~G~~~~~il 326 (591)
T TIGR01389 318 DGLPAEAIL 326 (591)
T ss_pred CCCCceEEE
Confidence 998776653
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.94 E-value=1.9e-25 Score=272.24 Aligned_cols=304 Identities=16% Similarity=0.172 Sum_probs=206.7
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCc-ccHHHHHHHHHHhcCCCcEE
Q 001731 303 MLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK-TLLSHWIKELTAVGLSAKIR 381 (1019)
Q Consensus 303 ~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~-sLl~qW~~E~~k~~~~~~v~ 381 (1019)
.++|+|.+++..+.. ++.+++..+||+|||+.....+ +.. .+.+|||+|. +|+.+|...+...+. ...
T Consensus 25 ~~r~~Q~~ai~~il~----g~dvlv~apTGsGKTl~y~lpa--l~~---~g~tlVisPl~sL~~dqv~~l~~~gi--~~~ 93 (607)
T PRK11057 25 QFRPGQQEIIDAVLS----GRDCLVVMPTGGGKSLCYQIPA--LVL---DGLTLVVSPLISLMKDQVDQLLANGV--AAA 93 (607)
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHHH--HHc---CCCEEEEecHHHHHHHHHHHHHHcCC--cEE
Confidence 589999999988776 7899999999999998643222 222 3579999998 778899999987643 233
Q ss_pred EEcccccchhhHHH-HH-hhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcchH------
Q 001731 382 EYFGTCVKTRQYEL-QY-VLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQ------ 453 (1019)
Q Consensus 382 ~~~g~~~~~~~~~~-~~-~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s~------ 453 (1019)
...+.......... .. .....+++++|++.+....- .. .+....+.+|||||||++..+...
T Consensus 94 ~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~-~~---------~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~ 163 (607)
T PRK11057 94 CLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNF-LE---------HLAHWNPALLAVDEAHCISQWGHDFRPEYA 163 (607)
T ss_pred EEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHH-HH---------HHhhCCCCEEEEeCccccccccCcccHHHH
Confidence 33333222211111 11 12346899999998764211 00 012345789999999999765421
Q ss_pred -HhHHhhcCCcccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHHH
Q 001731 454 -RAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRE 532 (1019)
Q Consensus 454 -~~kal~~l~~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~~L~~ 532 (1019)
+......++....++||||+-.....++...+.+..|..+. ..|
T Consensus 164 ~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~------~~~----------------------------- 208 (607)
T PRK11057 164 ALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQI------SSF----------------------------- 208 (607)
T ss_pred HHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEE------CCC-----------------------------
Confidence 22222334566789999999765555555444322221000 000
Q ss_pred HhHHHHHHhhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcChhhh
Q 001731 533 RIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLL 612 (1019)
Q Consensus 533 ~i~p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~ll 612 (1019)
..|... ..+ +.
T Consensus 209 ------------------------~r~nl~-~~v-~~------------------------------------------- 219 (607)
T PRK11057 209 ------------------------DRPNIR-YTL-VE------------------------------------------- 219 (607)
T ss_pred ------------------------CCCcce-eee-ee-------------------------------------------
Confidence 000000 000 00
Q ss_pred hhhhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhccCCCceeEecccHHHHHH
Q 001731 613 TKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNL 692 (1019)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldi 692 (1019)
...++..+..++.. ..+.++||||.++..++.
T Consensus 220 ----------------------------------------------~~~~~~~l~~~l~~--~~~~~~IIFc~tr~~~e~ 251 (607)
T PRK11057 220 ----------------------------------------------KFKPLDQLMRYVQE--QRGKSGIIYCNSRAKVED 251 (607)
T ss_pred ----------------------------------------------ccchHHHHHHHHHh--cCCCCEEEEECcHHHHHH
Confidence 00011122223322 257789999999999999
Q ss_pred HHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCCCCCchhhhhhhhhhhh
Q 001731 693 IQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYR 772 (1019)
Q Consensus 693 L~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QaiGRa~R 772 (1019)
+...|...|+++..+||+++.++|.++++.|..+... +|++|.+.|+|||+++++.||+||+|+++..|.|++||++|
T Consensus 252 la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~--VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR 329 (607)
T PRK11057 252 TAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQ--IVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGR 329 (607)
T ss_pred HHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCC--EEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccC
Confidence 9999999999999999999999999999999998755 88899999999999999999999999999999999999999
Q ss_pred hCCCCcEEE
Q 001731 773 IGQKKDVVV 781 (1019)
Q Consensus 773 iGQ~k~V~V 781 (1019)
.|....+.+
T Consensus 330 ~G~~~~~il 338 (607)
T PRK11057 330 DGLPAEAML 338 (607)
T ss_pred CCCCceEEE
Confidence 998766544
No 40
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.94 E-value=6.5e-25 Score=266.78 Aligned_cols=312 Identities=17% Similarity=0.215 Sum_probs=213.8
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHH-HHHHHHHhhcCCCCeEEEEeCc-ccHHHHHHHHHHhc---C
Q 001731 302 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQI-CGFLAGLFHSRLIKRALVVAPK-TLLSHWIKELTAVG---L 376 (1019)
Q Consensus 302 ~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqa-Iali~~l~~~~~~~~~LIVvP~-sLl~qW~~E~~k~~---~ 376 (1019)
..+.|+|.+++..+.. ++..|+..+||+|||++. +.++..+........+||+||+ .|..||..++.++. +
T Consensus 27 ~~ptpiQ~~ai~~ll~----g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~ 102 (629)
T PRK11634 27 EKPSPIQAECIPHLLN----GRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMR 102 (629)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcC
Confidence 3588999999988876 778899999999999874 3444444333334579999999 67799999887764 4
Q ss_pred CCcEEEEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcch--HH
Q 001731 377 SAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPST--QR 454 (1019)
Q Consensus 377 ~~~v~~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s--~~ 454 (1019)
+..+..++|...... .........+|||+|++.+........ +....+.+|||||||.+.+... .+
T Consensus 103 ~i~v~~~~gG~~~~~--q~~~l~~~~~IVVgTPgrl~d~l~r~~----------l~l~~l~~lVlDEAd~ml~~gf~~di 170 (629)
T PRK11634 103 GVNVVALYGGQRYDV--QLRALRQGPQIVVGTPGRLLDHLKRGT----------LDLSKLSGLVLDEADEMLRMGFIEDV 170 (629)
T ss_pred CceEEEEECCcCHHH--HHHHhcCCCCEEEECHHHHHHHHHcCC----------cchhhceEEEeccHHHHhhcccHHHH
Confidence 566666655533222 222233467999999999876543211 1234578899999999865442 34
Q ss_pred hHHhhcCCcc-cEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhh-cccccCCCcchhhHHHHhhHHHHHHHHH
Q 001731 455 AKSLLEIPSA-HRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYE-LPILRGNDKHALDREKRIGSAVAKELRE 532 (1019)
Q Consensus 455 ~kal~~l~~~-~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~-~pi~~~~~~~a~~~e~~~~~~~~~~L~~ 532 (1019)
...+..++.. ..+++|||.-. .+.++. . .|. .|.
T Consensus 171 ~~Il~~lp~~~q~llfSAT~p~-~i~~i~---~---------------~~l~~~~------------------------- 206 (629)
T PRK11634 171 ETIMAQIPEGHQTALFSATMPE-AIRRIT---R---------------RFMKEPQ------------------------- 206 (629)
T ss_pred HHHHHhCCCCCeEEEEEccCCh-hHHHHH---H---------------HHcCCCe-------------------------
Confidence 4555566544 45889999521 111111 0 000 000
Q ss_pred HhHHHHHHhhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcChhhh
Q 001731 533 RIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLL 612 (1019)
Q Consensus 533 ~i~p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~ll 612 (1019)
.+.-... ....|......+.+
T Consensus 207 ------------~i~i~~~---~~~~~~i~q~~~~v-------------------------------------------- 227 (629)
T PRK11634 207 ------------EVRIQSS---VTTRPDISQSYWTV-------------------------------------------- 227 (629)
T ss_pred ------------EEEccCc---cccCCceEEEEEEe--------------------------------------------
Confidence 0000000 00000000000000
Q ss_pred hhhhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhccCCCceeEecccHHHHHH
Q 001731 613 TKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNL 692 (1019)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldi 692 (1019)
....|...|..+|... ...++||||..+..++.
T Consensus 228 ---------------------------------------------~~~~k~~~L~~~L~~~--~~~~~IVF~~tk~~a~~ 260 (629)
T PRK11634 228 ---------------------------------------------WGMRKNEALVRFLEAE--DFDAAIIFVRTKNATLE 260 (629)
T ss_pred ---------------------------------------------chhhHHHHHHHHHHhc--CCCCEEEEeccHHHHHH
Confidence 0122555566666543 34679999999999999
Q ss_pred HHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCCCCCchhhhhhhhhhhh
Q 001731 693 IQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYR 772 (1019)
Q Consensus 693 L~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QaiGRa~R 772 (1019)
|...|...|+.+..++|.+++.+|.+++++|+.+... +||+|+++++|||++.+++||+||+|.++..|.|++||++|
T Consensus 261 l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~--ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGR 338 (629)
T PRK11634 261 VAEALERNGYNSAALNGDMNQALREQTLERLKDGRLD--ILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR 338 (629)
T ss_pred HHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCC--EEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccC
Confidence 9999999999999999999999999999999998755 89999999999999999999999999999999999999999
Q ss_pred hCCCCcEEE
Q 001731 773 IGQKKDVVV 781 (1019)
Q Consensus 773 iGQ~k~V~V 781 (1019)
.|..-.+.+
T Consensus 339 aGr~G~ai~ 347 (629)
T PRK11634 339 AGRAGRALL 347 (629)
T ss_pred CCCcceEEE
Confidence 998664443
No 41
>PTZ00424 helicase 45; Provisional
Probab=99.94 E-value=6.2e-25 Score=256.30 Aligned_cols=318 Identities=20% Similarity=0.238 Sum_probs=208.6
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhh-cCCCCeEEEEeCc-ccHHHHHHHHHHhcCCCc
Q 001731 302 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFH-SRLIKRALVVAPK-TLLSHWIKELTAVGLSAK 379 (1019)
Q Consensus 302 ~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~-~~~~~~~LIVvP~-sLl~qW~~E~~k~~~~~~ 379 (1019)
..+.|+|..++..+.. +...|+..+||+|||++++..+..... .....++|||+|. .|..||.+.+..++....
T Consensus 49 ~~~~~~Q~~ai~~i~~----~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~ 124 (401)
T PTZ00424 49 EKPSAIQQRGIKPILD----GYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLK 124 (401)
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcC
Confidence 3588999999998876 788999999999999875543333332 2234589999998 566888887777654333
Q ss_pred --EEEEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcc--hHHh
Q 001731 380 --IREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPS--TQRA 455 (1019)
Q Consensus 380 --v~~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~--s~~~ 455 (1019)
.....|..... ..........+|+|+|++.+........ .....+++||+||||++.... ....
T Consensus 125 ~~~~~~~g~~~~~--~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~----------~~l~~i~lvViDEah~~~~~~~~~~~~ 192 (401)
T PTZ00424 125 VRCHACVGGTVVR--DDINKLKAGVHMVVGTPGRVYDMIDKRH----------LRVDDLKLFILDEADEMLSRGFKGQIY 192 (401)
T ss_pred ceEEEEECCcCHH--HHHHHHcCCCCEEEECcHHHHHHHHhCC----------cccccccEEEEecHHHHHhcchHHHHH
Confidence 22333332221 2223334457999999998765433211 123457899999999986533 3344
Q ss_pred HHhhcCCc-ccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhh-cccccCCCcchhhHHHHhhHHHHHHHHHH
Q 001731 456 KSLLEIPS-AHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYE-LPILRGNDKHALDREKRIGSAVAKELRER 533 (1019)
Q Consensus 456 kal~~l~~-~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~-~pi~~~~~~~a~~~e~~~~~~~~~~L~~~ 533 (1019)
..+..++. ...+++|||+-. ...++.. .|. .|.
T Consensus 193 ~i~~~~~~~~~~i~~SAT~~~-~~~~~~~------------------~~~~~~~-------------------------- 227 (401)
T PTZ00424 193 DVFKKLPPDVQVALFSATMPN-EILELTT------------------KFMRDPK-------------------------- 227 (401)
T ss_pred HHHhhCCCCcEEEEEEecCCH-HHHHHHH------------------HHcCCCE--------------------------
Confidence 55555543 456889999732 1111100 000 000
Q ss_pred hHHHHHHhhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcChhhhh
Q 001731 534 IQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLT 613 (1019)
Q Consensus 534 i~p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~ll~ 613 (1019)
....... ...+.......+.+. .
T Consensus 228 ----------~~~~~~~----~~~~~~~~~~~~~~~--~----------------------------------------- 250 (401)
T PTZ00424 228 ----------RILVKKD----ELTLEGIRQFYVAVE--K----------------------------------------- 250 (401)
T ss_pred ----------EEEeCCC----CcccCCceEEEEecC--h-----------------------------------------
Confidence 0000000 000000001111110 0
Q ss_pred hhhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhccCCCceeEecccHHHHHHH
Q 001731 614 KRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLI 693 (1019)
Q Consensus 614 ~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL 693 (1019)
...|...+..++... ...++||||.++..++.+
T Consensus 251 ---------------------------------------------~~~~~~~l~~~~~~~--~~~~~ivF~~t~~~~~~l 283 (401)
T PTZ00424 251 ---------------------------------------------EEWKFDTLCDLYETL--TITQAIIYCNTRRKVDYL 283 (401)
T ss_pred ---------------------------------------------HHHHHHHHHHHHHhc--CCCeEEEEecCcHHHHHH
Confidence 001222233333322 346799999999999999
Q ss_pred HHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCCCCCchhhhhhhhhhhhh
Q 001731 694 QESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRI 773 (1019)
Q Consensus 694 ~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QaiGRa~Ri 773 (1019)
...|...++.+..+||+++..+|..+++.|+++... +|++|.++++|+|++.+++||+||+|.++..+.|++||++|.
T Consensus 284 ~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~--vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~ 361 (401)
T PTZ00424 284 TKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTR--VLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRF 361 (401)
T ss_pred HHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCC--EEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccC
Confidence 999999999999999999999999999999998855 889999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEEeeCC
Q 001731 774 GQKKDVVVYRLMTCG 788 (1019)
Q Consensus 774 GQ~k~V~VyrLit~g 788 (1019)
|..- .+|.|++..
T Consensus 362 g~~G--~~i~l~~~~ 374 (401)
T PTZ00424 362 GRKG--VAINFVTPD 374 (401)
T ss_pred CCCc--eEEEEEcHH
Confidence 8654 445566554
No 42
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.94 E-value=2.9e-25 Score=273.00 Aligned_cols=315 Identities=16% Similarity=0.160 Sum_probs=209.3
Q ss_pred cCCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCc-ccHHHHHHHHHHhcCCCc
Q 001731 301 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK-TLLSHWIKELTAVGLSAK 379 (1019)
Q Consensus 301 ~~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~-sLl~qW~~E~~k~~~~~~ 379 (1019)
+..++|+|.++|..++. |+.+|+..+||.|||+.....+ +. ..+.+|||+|. +|+.++...+...+ ..
T Consensus 458 ~~sFRp~Q~eaI~aiL~----GrDVLVimPTGSGKSLcYQLPA--L~---~~GiTLVISPLiSLmqDQV~~L~~~G--I~ 526 (1195)
T PLN03137 458 NHSFRPNQREIINATMS----GYDVFVLMPTGGGKSLTYQLPA--LI---CPGITLVISPLVSLIQDQIMNLLQAN--IP 526 (1195)
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEcCCCccHHHHHHHHH--HH---cCCcEEEEeCHHHHHHHHHHHHHhCC--Ce
Confidence 35799999999988876 8899999999999998643222 11 13579999998 77776777776543 22
Q ss_pred EEEEcccccch-hhHHHHHh---hhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcchHH-
Q 001731 380 IREYFGTCVKT-RQYELQYV---LQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQR- 454 (1019)
Q Consensus 380 v~~~~g~~~~~-~~~~~~~~---~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s~~- 454 (1019)
...+.+..... ....+... ....+|+++|++.+......+.....+ .....+.+|||||||++..+....
T Consensus 527 Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L-----~~~~~LslIVIDEAHcVSqWGhDFR 601 (1195)
T PLN03137 527 AASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENL-----NSRGLLARFVIDEAHCVSQWGHDFR 601 (1195)
T ss_pred EEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhh-----hhccccceeccCcchhhhhcccchH
Confidence 33233322222 22222222 246799999999875421111100000 012336889999999997654321
Q ss_pred --hH----HhhcCCcccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHH
Q 001731 455 --AK----SLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAK 528 (1019)
Q Consensus 455 --~k----al~~l~~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~ 528 (1019)
++ ....++....++||||.......++...+.+..+-. |...|.
T Consensus 602 pdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~v------fr~Sf~------------------------ 651 (1195)
T PLN03137 602 PDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVV------FRQSFN------------------------ 651 (1195)
T ss_pred HHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEE------eecccC------------------------
Confidence 22 223456677899999987766666655543221110 000000
Q ss_pred HHHHHhHHHHHHhhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcC
Q 001731 529 ELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDH 608 (1019)
Q Consensus 529 ~L~~~i~p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~h 608 (1019)
-|... +.| ++-. .
T Consensus 652 -----------------------------RpNL~-y~V-v~k~---k--------------------------------- 664 (1195)
T PLN03137 652 -----------------------------RPNLW-YSV-VPKT---K--------------------------------- 664 (1195)
T ss_pred -----------------------------ccceE-EEE-eccc---h---------------------------------
Confidence 00000 000 0000 0
Q ss_pred hhhhhhhhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhccCCCceeEecccHH
Q 001731 609 PLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRK 688 (1019)
Q Consensus 609 P~ll~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~ 688 (1019)
..+..|..++... ..+...||||.++.
T Consensus 665 ----------------------------------------------------k~le~L~~~I~~~-~~~esgIIYC~SRk 691 (1195)
T PLN03137 665 ----------------------------------------------------KCLEDIDKFIKEN-HFDECGIIYCLSRM 691 (1195)
T ss_pred ----------------------------------------------------hHHHHHHHHHHhc-ccCCCceeEeCchh
Confidence 0011122222211 12457899999999
Q ss_pred HHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCCCCCchhhhhhhh
Q 001731 689 MLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVD 768 (1019)
Q Consensus 689 ~ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QaiG 768 (1019)
.++.+...|...|+++..|||+++..+|..+++.|..+... +|++|.++|+|||++.++.||+|++|.++..|.|++|
T Consensus 692 e~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~--VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriG 769 (1195)
T PLN03137 692 DCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEIN--IICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECG 769 (1195)
T ss_pred HHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCc--EEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhc
Confidence 99999999999999999999999999999999999998855 8899999999999999999999999999999999999
Q ss_pred hhhhhCCCCcEEEEE
Q 001731 769 RAYRIGQKKDVVVYR 783 (1019)
Q Consensus 769 Ra~RiGQ~k~V~Vyr 783 (1019)
|++|.|+...|.+|+
T Consensus 770 RAGRDG~~g~cILly 784 (1195)
T PLN03137 770 RAGRDGQRSSCVLYY 784 (1195)
T ss_pred ccCCCCCCceEEEEe
Confidence 999999988877654
No 43
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=2.9e-25 Score=255.49 Aligned_cols=315 Identities=22% Similarity=0.257 Sum_probs=222.1
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHH-HHHHHHHHhh------cCCCCeEEEEeCcc-cHHHHHHHHHHh
Q 001731 303 MLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQ-ICGFLAGLFH------SRLIKRALVVAPKT-LLSHWIKELTAV 374 (1019)
Q Consensus 303 ~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlq-aIali~~l~~------~~~~~~~LIVvP~s-Ll~qW~~E~~k~ 374 (1019)
.+.|.|..+...++. |+.++....||+|||+. .|.++.++.. .+....+||++|+. |..|...++..+
T Consensus 113 ~PtpIQaq~wp~~l~----GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~ 188 (519)
T KOG0331|consen 113 KPTPIQAQGWPIALS----GRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREF 188 (519)
T ss_pred CCchhhhcccceecc----CCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHH
Confidence 466788876665655 89999999999999998 5556666554 22234699999995 667888889888
Q ss_pred cCCCc--EEEEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCC--c
Q 001731 375 GLSAK--IREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKN--P 450 (1019)
Q Consensus 375 ~~~~~--v~~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN--~ 450 (1019)
+.... ....+|......+ .....+..+|+|.|++.+........ .......|+|||||.++.. .
T Consensus 189 ~~~~~~~~~cvyGG~~~~~Q--~~~l~~gvdiviaTPGRl~d~le~g~----------~~l~~v~ylVLDEADrMldmGF 256 (519)
T KOG0331|consen 189 GKSLRLRSTCVYGGAPKGPQ--LRDLERGVDVVIATPGRLIDLLEEGS----------LNLSRVTYLVLDEADRMLDMGF 256 (519)
T ss_pred cCCCCccEEEEeCCCCccHH--HHHHhcCCcEEEeCChHHHHHHHcCC----------ccccceeEEEeccHHhhhcccc
Confidence 77665 4444554433322 23344568999999999987665332 3456689999999999955 4
Q ss_pred chHHhHHhhcC-Cccc-EEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHH
Q 001731 451 STQRAKSLLEI-PSAH-RIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAK 528 (1019)
Q Consensus 451 ~s~~~kal~~l-~~~~-RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~ 528 (1019)
..++-+.+..+ ++.+ .++-|||-- .+
T Consensus 257 e~qI~~Il~~i~~~~rQtlm~saTwp----~~------------------------------------------------ 284 (519)
T KOG0331|consen 257 EPQIRKILSQIPRPDRQTLMFSATWP----KE------------------------------------------------ 284 (519)
T ss_pred HHHHHHHHHhcCCCcccEEEEeeecc----HH------------------------------------------------
Confidence 45677777777 3332 466677731 01
Q ss_pred HHHHHhHHHHHHhhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcC
Q 001731 529 ELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDH 608 (1019)
Q Consensus 529 ~L~~~i~p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~h 608 (1019)
.+.+-..|+-.-.+-.+ ... ..+. ....+.++-..|
T Consensus 285 -v~~lA~~fl~~~~~i~i-------------------g~~---~~~~-------------------a~~~i~qive~~-- 320 (519)
T KOG0331|consen 285 -VRQLAEDFLNNPIQINV-------------------GNK---KELK-------------------ANHNIRQIVEVC-- 320 (519)
T ss_pred -HHHHHHHHhcCceEEEe-------------------cch---hhhh-------------------hhcchhhhhhhc--
Confidence 11111111110000000 000 0000 000000010111
Q ss_pred hhhhhhhhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhc-cCCCceeEecccH
Q 001731 609 PLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLI-PEGHNVLIFSQTR 687 (1019)
Q Consensus 609 P~ll~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~-~~g~KvLIFsq~~ 687 (1019)
....|...|..+|..+. ..+.|+||||.++
T Consensus 321 -------------------------------------------------~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tk 351 (519)
T KOG0331|consen 321 -------------------------------------------------DETAKLRKLGKLLEDISSDSEGKVIIFCETK 351 (519)
T ss_pred -------------------------------------------------CHHHHHHHHHHHHHHHhccCCCcEEEEecch
Confidence 13458888888888876 4667999999999
Q ss_pred HHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCCCCCchhhhhhh
Q 001731 688 KMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSV 767 (1019)
Q Consensus 688 ~~ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~Qai 767 (1019)
..++.|...|...++++.-|||..++.+|..+++.|.+|... +|++|+++++|||+.++++||+||+|-|...|+||+
T Consensus 352 r~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~--vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRi 429 (519)
T KOG0331|consen 352 RTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSP--VLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRI 429 (519)
T ss_pred hhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcc--eEEEcccccccCCCccccEEEeCCCCCCHHHHHhhc
Confidence 999999999999999999999999999999999999999866 999999999999999999999999999999999999
Q ss_pred hhhhhhCCCCcEE
Q 001731 768 DRAYRIGQKKDVV 780 (1019)
Q Consensus 768 GRa~RiGQ~k~V~ 780 (1019)
||++|.|++-..+
T Consensus 430 GRTGRa~~~G~A~ 442 (519)
T KOG0331|consen 430 GRTGRAGKKGTAI 442 (519)
T ss_pred CccccCCCCceEE
Confidence 9999988876543
No 44
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=2e-25 Score=241.54 Aligned_cols=322 Identities=21% Similarity=0.272 Sum_probs=237.5
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHH-HHHHHHHHhhcCCCCeEEEEeCcccH-HHHHHHHHHhcCCC-
Q 001731 302 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQ-ICGFLAGLFHSRLIKRALVVAPKTLL-SHWIKELTAVGLSA- 378 (1019)
Q Consensus 302 ~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlq-aIali~~l~~~~~~~~~LIVvP~sLl-~qW~~E~~k~~~~~- 378 (1019)
..+.+.|.+++...+. |+.+|.+.+||+|||.. +|.++..++..+..-.+||++|+.-+ .|....|..++.+.
T Consensus 82 ~~PT~IQ~~aiP~~L~----g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~ig 157 (476)
T KOG0330|consen 82 KKPTKIQSEAIPVALG----GRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIG 157 (476)
T ss_pred CCCchhhhhhcchhhC----CCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccC
Confidence 3456789999988877 88999999999999998 88888999887777789999999655 66677788876544
Q ss_pred -cEEEEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcch--HHh
Q 001731 379 -KIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPST--QRA 455 (1019)
Q Consensus 379 -~v~~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s--~~~ 455 (1019)
++.+..|....... .....++.+|+|.|++.+..+....+. +......++|+|||.++.|... ...
T Consensus 158 lr~~~lvGG~~m~~q--~~~L~kkPhilVaTPGrL~dhl~~Tkg---------f~le~lk~LVlDEADrlLd~dF~~~ld 226 (476)
T KOG0330|consen 158 LRVAVLVGGMDMMLQ--ANQLSKKPHILVATPGRLWDHLENTKG---------FSLEQLKFLVLDEADRLLDMDFEEELD 226 (476)
T ss_pred eEEEEEecCchHHHH--HHHhhcCCCEEEeCcHHHHHHHHhccC---------ccHHHhHHHhhchHHhhhhhhhHHHHH
Confidence 55556665544332 233456789999999999888764332 2344578999999999998653 567
Q ss_pred HHhhcCCcccE-EEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHHHHh
Q 001731 456 KSLLEIPSAHR-IIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERI 534 (1019)
Q Consensus 456 kal~~l~~~~R-llLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~~L~~~i 534 (1019)
+.+..++..++ ++.|||-.. +...|...
T Consensus 227 ~ILk~ip~erqt~LfsATMt~-kv~kL~ra-------------------------------------------------- 255 (476)
T KOG0330|consen 227 YILKVIPRERQTFLFSATMTK-KVRKLQRA-------------------------------------------------- 255 (476)
T ss_pred HHHHhcCccceEEEEEeecch-hhHHHHhh--------------------------------------------------
Confidence 77888887665 677888532 22222100
Q ss_pred HHHHHHhhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcChhhhhh
Q 001731 535 QPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLTK 614 (1019)
Q Consensus 535 ~p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~ll~~ 614 (1019)
.++ -| +.|.-+. .|+.+ ..|.|-. ++
T Consensus 256 ---sl~-----------------~p------~~v~~s~----ky~tv------------------~~lkQ~y----lf-- 281 (476)
T KOG0330|consen 256 ---SLD-----------------NP------VKVAVSS----KYQTV------------------DHLKQTY----LF-- 281 (476)
T ss_pred ---ccC-----------------CC------eEEeccc----hhcch------------------HHhhhhe----Ee--
Confidence 000 00 0010000 11110 0000000 00
Q ss_pred hhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhccCCCceeEecccHHHHHHHH
Q 001731 615 RAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQ 694 (1019)
Q Consensus 615 ~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~ 694 (1019)
...--|-..|+.+|.+. .|..+||||..-.+.+.+.
T Consensus 282 ------------------------------------------v~~k~K~~yLV~ll~e~--~g~s~iVF~~t~~tt~~la 317 (476)
T KOG0330|consen 282 ------------------------------------------VPGKDKDTYLVYLLNEL--AGNSVIVFCNTCNTTRFLA 317 (476)
T ss_pred ------------------------------------------ccccccchhHHHHHHhh--cCCcEEEEEeccchHHHHH
Confidence 00122667788888876 5688999999999999999
Q ss_pred HHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCCCCCchhhhhhhhhhhhhC
Q 001731 695 ESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIG 774 (1019)
Q Consensus 695 ~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QaiGRa~RiG 774 (1019)
-+|...|+....++|.|++..|..+++.|+++... +|++|+++++|||++.++.||+||.|-+...|++|+||++|.|
T Consensus 318 ~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~--iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaG 395 (476)
T KOG0330|consen 318 LLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARS--ILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAG 395 (476)
T ss_pred HHHHhcCcceecccchhhHHHHHHHHHHHhccCCc--EEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccC
Confidence 99999999999999999999999999999998755 9999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEEeeCCCHH
Q 001731 775 QKKDVVVYRLMTCGTVE 791 (1019)
Q Consensus 775 Q~k~V~VyrLit~gTiE 791 (1019)
+.-.+..|++...+|
T Consensus 396 --rsG~~ItlVtqyDve 410 (476)
T KOG0330|consen 396 --RSGKAITLVTQYDVE 410 (476)
T ss_pred --CCcceEEEEehhhhH
Confidence 666678899885444
No 45
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=2e-22 Score=240.65 Aligned_cols=331 Identities=21% Similarity=0.293 Sum_probs=225.2
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHH-HHHHHHHHhh-cCCCCe-EEEEeCcc-cHHHHHHHHHHhcC--
Q 001731 303 MLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQ-ICGFLAGLFH-SRLIKR-ALVVAPKT-LLSHWIKELTAVGL-- 376 (1019)
Q Consensus 303 ~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlq-aIali~~l~~-~~~~~~-~LIVvP~s-Ll~qW~~E~~k~~~-- 376 (1019)
.+.|.|..++..++. ++..|....||+|||+. .|.++..+.. ...... +||++|+. |..|..+++.+++.
T Consensus 51 ~pt~IQ~~~IP~~l~----g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~ 126 (513)
T COG0513 51 EPTPIQLAAIPLILA----GRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNL 126 (513)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhc
Confidence 456999999988877 78889999999999987 5566666542 222223 99999995 55788888877655
Q ss_pred -CCcEEEEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcch--H
Q 001731 377 -SAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPST--Q 453 (1019)
Q Consensus 377 -~~~v~~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s--~ 453 (1019)
+..+..++|......+. .......+|||.|++.+..+.... .+......++|+|||.++.+.+. .
T Consensus 127 ~~~~~~~i~GG~~~~~q~--~~l~~~~~ivVaTPGRllD~i~~~----------~l~l~~v~~lVlDEADrmLd~Gf~~~ 194 (513)
T COG0513 127 GGLRVAVVYGGVSIRKQI--EALKRGVDIVVATPGRLLDLIKRG----------KLDLSGVETLVLDEADRMLDMGFIDD 194 (513)
T ss_pred CCccEEEEECCCCHHHHH--HHHhcCCCEEEECccHHHHHHHcC----------CcchhhcCEEEeccHhhhhcCCCHHH
Confidence 34455555554333332 222235899999999998655432 23456688999999999988643 3
Q ss_pred HhHHhhcCCc-ccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHHH
Q 001731 454 RAKSLLEIPS-AHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRE 532 (1019)
Q Consensus 454 ~~kal~~l~~-~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~~L~~ 532 (1019)
+...+..++. ...++.|||.-. .+.+ +..- |..
T Consensus 195 i~~I~~~~p~~~qtllfSAT~~~-~i~~---l~~~---------------~l~--------------------------- 228 (513)
T COG0513 195 IEKILKALPPDRQTLLFSATMPD-DIRE---LARR---------------YLN--------------------------- 228 (513)
T ss_pred HHHHHHhCCcccEEEEEecCCCH-HHHH---HHHH---------------Hcc---------------------------
Confidence 4555666655 556788999632 1211 1110 000
Q ss_pred HhHHHHHHhhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcChhhh
Q 001731 533 RIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLL 612 (1019)
Q Consensus 533 ~i~p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~ll 612 (1019)
.|..+ .+.. .......+......+.|.-
T Consensus 229 --~p~~i-----~v~~---~~~~~~~~~i~q~~~~v~~------------------------------------------ 256 (513)
T COG0513 229 --DPVEI-----EVSV---EKLERTLKKIKQFYLEVES------------------------------------------ 256 (513)
T ss_pred --CCcEE-----EEcc---ccccccccCceEEEEEeCC------------------------------------------
Confidence 00000 0000 0000011111111121210
Q ss_pred hhhhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhccCCCceeEecccHHHHHH
Q 001731 613 TKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNL 692 (1019)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldi 692 (1019)
...|+..|..++.... ..++||||.....++.
T Consensus 257 ----------------------------------------------~~~k~~~L~~ll~~~~--~~~~IVF~~tk~~~~~ 288 (513)
T COG0513 257 ----------------------------------------------EEEKLELLLKLLKDED--EGRVIVFVRTKRLVEE 288 (513)
T ss_pred ----------------------------------------------HHHHHHHHHHHHhcCC--CCeEEEEeCcHHHHHH
Confidence 0137777777776643 2369999999999999
Q ss_pred HHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCCCCCchhhhhhhhhhhh
Q 001731 693 IQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYR 772 (1019)
Q Consensus 693 L~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QaiGRa~R 772 (1019)
|...|...|+++..|||++++.+|.++++.|+++... +|++|+++++||++...++||+||+|.++..|.||+||++|
T Consensus 289 l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~--vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgR 366 (513)
T COG0513 289 LAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELR--VLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGR 366 (513)
T ss_pred HHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCC--EEEEechhhccCCccccceeEEccCCCCHHHheeccCcccc
Confidence 9999999999999999999999999999999988765 89999999999999999999999999999999999999999
Q ss_pred hCCCCcEEEEEEeeCCCHHHHHHHHHHH
Q 001731 773 IGQKKDVVVYRLMTCGTVEEKIYRKQIF 800 (1019)
Q Consensus 773 iGQ~k~V~VyrLit~gTiEEkI~~rq~~ 800 (1019)
.|.+- ..+.|++. .-|...+.+...
T Consensus 367 aG~~G--~ai~fv~~-~~e~~~l~~ie~ 391 (513)
T COG0513 367 AGRKG--VAISFVTE-EEEVKKLKRIEK 391 (513)
T ss_pred CCCCC--eEEEEeCc-HHHHHHHHHHHH
Confidence 99443 55566665 224444444333
No 46
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.91 E-value=2.2e-22 Score=249.14 Aligned_cols=338 Identities=16% Similarity=0.220 Sum_probs=215.5
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHH-HHHHHHhhcCCCCeEEEEeCc-ccHHHHHHHHHHhcC-CC
Q 001731 302 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQIC-GFLAGLFHSRLIKRALVVAPK-TLLSHWIKELTAVGL-SA 378 (1019)
Q Consensus 302 ~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaI-ali~~l~~~~~~~~~LIVvP~-sLl~qW~~E~~k~~~-~~ 378 (1019)
..|+|||.+++..+.. |++.|+..+||+|||+..+ .++..+.. ....++|||+|+ .|..|...++.++.. +.
T Consensus 35 ~~p~~~Q~~ai~~il~----G~nvvv~apTGSGKTla~~LPiL~~l~~-~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i 109 (742)
T TIGR03817 35 HRPWQHQARAAELAHA----GRHVVVATGTASGKSLAYQLPVLSALAD-DPRATALYLAPTKALAADQLRAVRELTLRGV 109 (742)
T ss_pred CcCCHHHHHHHHHHHC----CCCEEEECCCCCcHHHHHHHHHHHHHhh-CCCcEEEEEcChHHHHHHHHHHHHHhccCCe
Confidence 3589999999998866 8899999999999999844 44544443 334589999998 566888888888763 34
Q ss_pred cEEEEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCc-chHHhHH
Q 001731 379 KIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNP-STQRAKS 457 (1019)
Q Consensus 379 ~v~~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~-~s~~~ka 457 (1019)
.+..+.|......+ .......+|+|+|++++....-... ..+. .......+|||||||.+... .+.....
T Consensus 110 ~v~~~~Gdt~~~~r---~~i~~~~~IivtTPd~L~~~~L~~~-~~~~-----~~l~~l~~vViDEah~~~g~fg~~~~~i 180 (742)
T TIGR03817 110 RPATYDGDTPTEER---RWAREHARYVLTNPDMLHRGILPSH-ARWA-----RFLRRLRYVVIDECHSYRGVFGSHVALV 180 (742)
T ss_pred EEEEEeCCCCHHHH---HHHhcCCCEEEEChHHHHHhhccch-hHHH-----HHHhcCCEEEEeChhhccCccHHHHHHH
Confidence 56666665443222 2233467999999999864221100 0000 00124689999999999762 3343333
Q ss_pred hhcC--------CcccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHH
Q 001731 458 LLEI--------PSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKE 529 (1019)
Q Consensus 458 l~~l--------~~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~~ 529 (1019)
+..+ .....+++|||. +++.++... +.. .|+.
T Consensus 181 l~rL~ri~~~~g~~~q~i~~SATi--~n~~~~~~~---l~g--------------~~~~--------------------- 220 (742)
T TIGR03817 181 LRRLRRLCARYGASPVFVLASATT--ADPAAAASR---LIG--------------APVV--------------------- 220 (742)
T ss_pred HHHHHHHHHhcCCCCEEEEEecCC--CCHHHHHHH---HcC--------------CCeE---------------------
Confidence 3332 124578899995 233443211 100 0000
Q ss_pred HHHHhHHHHHHhhhhcccccCccccccccCcc-ceEEEEEcCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcC
Q 001731 530 LRERIQPYFLRRLKNEVFHEDDVTSSATLSKK-NEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDH 608 (1019)
Q Consensus 530 L~~~i~p~~lRR~k~dv~~~~~~~~~~~LP~k-~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~h 608 (1019)
+... ...|.. ....+|.+.- .. ... . .+ .
T Consensus 221 ----------------~i~~------~~~~~~~~~~~~~~p~~-~~------~~~------~-~~--------------~ 250 (742)
T TIGR03817 221 ----------------AVTE------DGSPRGARTVALWEPPL-TE------LTG------E-NG--------------A 250 (742)
T ss_pred ----------------EECC------CCCCcCceEEEEecCCc-cc------ccc------c-cc--------------c
Confidence 0000 001111 1111221110 00 000 0 00 0
Q ss_pred hhhhhhhhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhccCCCceeEecccHH
Q 001731 609 PLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRK 688 (1019)
Q Consensus 609 P~ll~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~ 688 (1019)
+ . .......|...+..++. .+.++||||+++.
T Consensus 251 ~--~------------------------------------------r~~~~~~~~~~l~~l~~----~~~~~IVF~~sr~ 282 (742)
T TIGR03817 251 P--V------------------------------------------RRSASAEAADLLADLVA----EGARTLTFVRSRR 282 (742)
T ss_pred c--c------------------------------------------ccchHHHHHHHHHHHHH----CCCCEEEEcCCHH
Confidence 0 0 00001123444444443 4789999999999
Q ss_pred HHHHHHHHHhhc--------CCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCCCCCc
Q 001731 689 MLNLIQESIGSK--------GYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNP 760 (1019)
Q Consensus 689 ~ldiL~~~L~~~--------gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp 760 (1019)
..+.|...|... +.++..++|++++.+|.++.++|.++... +|++|++.++|||+...+.||+|+.|-+.
T Consensus 283 ~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~--vLVaTd~lerGIDI~~vd~VI~~~~P~s~ 360 (742)
T TIGR03817 283 GAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELL--GVATTNALELGVDISGLDAVVIAGFPGTR 360 (742)
T ss_pred HHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCce--EEEECchHhccCCcccccEEEEeCCCCCH
Confidence 999999887653 56788999999999999999999998855 89999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhCCCCcEEEEEEeeCCCHHHHHH
Q 001731 761 STDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIY 795 (1019)
Q Consensus 761 ~~~~QaiGRa~RiGQ~k~V~VyrLit~gTiEEkI~ 795 (1019)
..|.||+||++|.|+..- ++.++..+..|..++
T Consensus 361 ~~y~qRiGRaGR~G~~g~--ai~v~~~~~~d~~~~ 393 (742)
T TIGR03817 361 ASLWQQAGRAGRRGQGAL--VVLVARDDPLDTYLV 393 (742)
T ss_pred HHHHHhccccCCCCCCcE--EEEEeCCChHHHHHH
Confidence 999999999999997653 344555555665544
No 47
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.91 E-value=2.7e-22 Score=245.72 Aligned_cols=307 Identities=18% Similarity=0.242 Sum_probs=199.7
Q ss_pred ccCCCchHHHHHHHHHHHhhcCC--CceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCc-ccHHHHHHHHHHhcC
Q 001731 300 IGNMLFPHQREGLRWLWSLHCQG--KGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK-TLLSHWIKELTAVGL 376 (1019)
Q Consensus 300 i~~~L~phQ~egV~~L~~~~~~~--~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~-sLl~qW~~E~~k~~~ 376 (1019)
+...|.++|..++..+....... .+.+|..+||+|||+.++..+...... ...++|++|+ .|..||.+.+.++++
T Consensus 232 lpf~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~--g~qvlilaPT~~LA~Q~~~~~~~l~~ 309 (630)
T TIGR00643 232 LPFKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA--GYQVALMAPTEILAEQHYNSLRNLLA 309 (630)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc--CCcEEEECCHHHHHHHHHHHHHHHhc
Confidence 33469999999999988754322 357999999999999866544444333 3589999999 556899999999876
Q ss_pred C--CcEEEEcccccchhhHH-HHHh-hhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcch
Q 001731 377 S--AKIREYFGTCVKTRQYE-LQYV-LQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPST 452 (1019)
Q Consensus 377 ~--~~v~~~~g~~~~~~~~~-~~~~-~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s 452 (1019)
. .++..+.|......+.. .... .+..+|+|.|+..+..... -....+||+||+|++.- .
T Consensus 310 ~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~---------------~~~l~lvVIDEaH~fg~--~ 372 (630)
T TIGR00643 310 PLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVE---------------FKRLALVIIDEQHRFGV--E 372 (630)
T ss_pred ccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhcccc---------------ccccceEEEechhhccH--H
Confidence 4 56666666544333222 2222 2356999999998864321 22468999999999732 2
Q ss_pred HHhHHhhcCC---cccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHH
Q 001731 453 QRAKSLLEIP---SAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKE 529 (1019)
Q Consensus 453 ~~~kal~~l~---~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~~ 529 (1019)
++........ ..+.+++||||+...+. +..+ +.+
T Consensus 373 qr~~l~~~~~~~~~~~~l~~SATp~prtl~----l~~~---~~l------------------------------------ 409 (630)
T TIGR00643 373 QRKKLREKGQGGFTPHVLVMSATPIPRTLA----LTVY---GDL------------------------------------ 409 (630)
T ss_pred HHHHHHHhcccCCCCCEEEEeCCCCcHHHH----HHhc---CCc------------------------------------
Confidence 2222222233 56789999999753221 1000 000
Q ss_pred HHHHhHHHHHHhhhhcccccCccccccccCc--cceEEEEEcCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhc
Q 001731 530 LRERIQPYFLRRLKNEVFHEDDVTSSATLSK--KNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICD 607 (1019)
Q Consensus 530 L~~~i~p~~lRR~k~dv~~~~~~~~~~~LP~--k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~ 607 (1019)
...++ ..+|. ......++.-..
T Consensus 410 -------------~~~~i--------~~~p~~r~~i~~~~~~~~~----------------------------------- 433 (630)
T TIGR00643 410 -------------DTSII--------DELPPGRKPITTVLIKHDE----------------------------------- 433 (630)
T ss_pred -------------ceeee--------ccCCCCCCceEEEEeCcch-----------------------------------
Confidence 00000 01111 111111111100
Q ss_pred ChhhhhhhhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhccCCCceeEecccH
Q 001731 608 HPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTR 687 (1019)
Q Consensus 608 hP~ll~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~ 687 (1019)
...+...+.+....+++++|||...
T Consensus 434 -------------------------------------------------------~~~~~~~i~~~l~~g~q~~v~~~~i 458 (630)
T TIGR00643 434 -------------------------------------------------------KDIVYEFIEEEIAKGRQAYVVYPLI 458 (630)
T ss_pred -------------------------------------------------------HHHHHHHHHHHHHhCCcEEEEEccc
Confidence 0111222222233577888888754
Q ss_pred --------HHHHHHHHHHhh--cCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCCC
Q 001731 688 --------KMLNLIQESIGS--KGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPA 757 (1019)
Q Consensus 688 --------~~ldiL~~~L~~--~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~ 757 (1019)
..+..+...|.. .++++..+||+++..+|.++++.|.++... +|++|.+.++|+|++.++.||+++++
T Consensus 459 ~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~--ILVaT~vie~GvDiP~v~~VIi~~~~ 536 (630)
T TIGR00643 459 EESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVD--ILVATTVIEVGVDVPNATVMVIEDAE 536 (630)
T ss_pred cccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCC--EEEECceeecCcccCCCcEEEEeCCC
Confidence 234445555543 378899999999999999999999998755 88999999999999999999999998
Q ss_pred C-CchhhhhhhhhhhhhCCCCcEEE
Q 001731 758 W-NPSTDNQSVDRAYRIGQKKDVVV 781 (1019)
Q Consensus 758 W-Np~~~~QaiGRa~RiGQ~k~V~V 781 (1019)
. +.+.+.|++||++|.|....|.+
T Consensus 537 r~gls~lhQ~~GRvGR~g~~g~~il 561 (630)
T TIGR00643 537 RFGLSQLHQLRGRVGRGDHQSYCLL 561 (630)
T ss_pred cCCHHHHHHHhhhcccCCCCcEEEE
Confidence 5 67889999999999987765543
No 48
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.90 E-value=4.4e-22 Score=245.50 Aligned_cols=305 Identities=16% Similarity=0.216 Sum_probs=199.3
Q ss_pred ccCCCchHHHHHHHHHHHhhcCC--CceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCc-ccHHHHHHHHHHhcC
Q 001731 300 IGNMLFPHQREGLRWLWSLHCQG--KGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK-TLLSHWIKELTAVGL 376 (1019)
Q Consensus 300 i~~~L~phQ~egV~~L~~~~~~~--~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~-sLl~qW~~E~~k~~~ 376 (1019)
+...|.++|..++..+..-...+ ...+|..+||+|||+.++..+...... ..++||++|+ .|..|+...+.++++
T Consensus 258 l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~--g~q~lilaPT~~LA~Q~~~~l~~l~~ 335 (681)
T PRK10917 258 LPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA--GYQAALMAPTEILAEQHYENLKKLLE 335 (681)
T ss_pred CCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc--CCeEEEEeccHHHHHHHHHHHHHHHh
Confidence 44569999999999887744332 367999999999999876554443332 3589999999 556899999999876
Q ss_pred C--CcEEEEcccccchh-hHHHHHhh-hCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcch
Q 001731 377 S--AKIREYFGTCVKTR-QYELQYVL-QDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPST 452 (1019)
Q Consensus 377 ~--~~v~~~~g~~~~~~-~~~~~~~~-~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s 452 (1019)
. ..+..+.|...... ........ +..+|+|.|+..+..... -....+||+||+|++. .
T Consensus 336 ~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~---------------~~~l~lvVIDE~Hrfg---~ 397 (681)
T PRK10917 336 PLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVE---------------FHNLGLVIIDEQHRFG---V 397 (681)
T ss_pred hcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccch---------------hcccceEEEechhhhh---H
Confidence 5 45666666554332 22222222 358999999988753211 2246899999999972 2
Q ss_pred HHhHHhhcC-CcccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHH
Q 001731 453 QRAKSLLEI-PSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELR 531 (1019)
Q Consensus 453 ~~~kal~~l-~~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~~L~ 531 (1019)
.....+... ...+.++|||||+...+. +..+ +.
T Consensus 398 ~qr~~l~~~~~~~~iL~~SATp~prtl~----~~~~------g~------------------------------------ 431 (681)
T PRK10917 398 EQRLALREKGENPHVLVMTATPIPRTLA----MTAY------GD------------------------------------ 431 (681)
T ss_pred HHHHHHHhcCCCCCEEEEeCCCCHHHHH----HHHc------CC------------------------------------
Confidence 222333333 346789999999642211 0000 00
Q ss_pred HHhHHHHHHhhhhcccccCccccccccCc--cceEEEEEcCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcCh
Q 001731 532 ERIQPYFLRRLKNEVFHEDDVTSSATLSK--KNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHP 609 (1019)
Q Consensus 532 ~~i~p~~lRR~k~dv~~~~~~~~~~~LP~--k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP 609 (1019)
....++ ..+|. +.....++...
T Consensus 432 ----------~~~s~i--------~~~p~~r~~i~~~~~~~~-------------------------------------- 455 (681)
T PRK10917 432 ----------LDVSVI--------DELPPGRKPITTVVIPDS-------------------------------------- 455 (681)
T ss_pred ----------CceEEE--------ecCCCCCCCcEEEEeCcc--------------------------------------
Confidence 000000 00111 00111111100
Q ss_pred hhhhhhhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhccCCCceeEecccHH-
Q 001731 610 LLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRK- 688 (1019)
Q Consensus 610 ~ll~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~- 688 (1019)
+...+.+.+......|++++|||....
T Consensus 456 ----------------------------------------------------~~~~~~~~i~~~~~~g~q~~v~~~~ie~ 483 (681)
T PRK10917 456 ----------------------------------------------------RRDEVYERIREEIAKGRQAYVVCPLIEE 483 (681)
T ss_pred ----------------------------------------------------cHHHHHHHHHHHHHcCCcEEEEEccccc
Confidence 011122222223346889999997532
Q ss_pred -------HHHHHHHHHhhc--CCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCCCC-
Q 001731 689 -------MLNLIQESIGSK--GYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAW- 758 (1019)
Q Consensus 689 -------~ldiL~~~L~~~--gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~W- 758 (1019)
.+..+...|... ++++..+||+|+..+|.+++++|.++... +|++|.+.++|+|+++++.||+++++.
T Consensus 484 s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~--ILVaT~vie~GiDip~v~~VIi~~~~r~ 561 (681)
T PRK10917 484 SEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEID--ILVATTVIEVGVDVPNATVMVIENAERF 561 (681)
T ss_pred ccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCC--EEEECcceeeCcccCCCcEEEEeCCCCC
Confidence 334455555544 57899999999999999999999998755 889999999999999999999999985
Q ss_pred CchhhhhhhhhhhhhCCCCcEE
Q 001731 759 NPSTDNQSVDRAYRIGQKKDVV 780 (1019)
Q Consensus 759 Np~~~~QaiGRa~RiGQ~k~V~ 780 (1019)
..+.+.|++||++|.|....|+
T Consensus 562 gls~lhQ~~GRvGR~g~~g~~i 583 (681)
T PRK10917 562 GLAQLHQLRGRVGRGAAQSYCV 583 (681)
T ss_pred CHHHHHHHhhcccCCCCceEEE
Confidence 5788999999999998765444
No 49
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.90 E-value=5.6e-22 Score=252.05 Aligned_cols=361 Identities=14% Similarity=0.164 Sum_probs=208.4
Q ss_pred CCCchHHHHHHHHHHHhhcC-CCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCc-ccHHHHHHHHHHhcCCCc
Q 001731 302 NMLFPHQREGLRWLWSLHCQ-GKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK-TLLSHWIKELTAVGLSAK 379 (1019)
Q Consensus 302 ~~L~phQ~egV~~L~~~~~~-~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~-sLl~qW~~E~~k~~~~~~ 379 (1019)
..|||||.++|..+...... .++++|+++||+|||+++++++..++.....+++|||||. .|+.||..+|..+.+...
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~ 491 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEGD 491 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhcccccc
Confidence 46999999999887765443 4678999999999999999999888877777899999997 688999999998754322
Q ss_pred E--EEEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcc------
Q 001731 380 I--REYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPS------ 451 (1019)
Q Consensus 380 v--~~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~------ 451 (1019)
. ...++...... .......+|+|+|++.+.+........ ........+++||+||||+.-...
T Consensus 492 ~~~~~i~~i~~L~~----~~~~~~~~I~iaTiQtl~~~~~~~~~~-----~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~ 562 (1123)
T PRK11448 492 QTFASIYDIKGLED----KFPEDETKVHVATVQGMVKRILYSDDP-----MDKPPVDQYDCIIVDEAHRGYTLDKEMSEG 562 (1123)
T ss_pred cchhhhhchhhhhh----hcccCCCCEEEEEHHHHHHhhhccccc-----cccCCCCcccEEEEECCCCCCccccccccc
Confidence 1 00111100000 001235789999999986543211100 001123568999999999963110
Q ss_pred ----------hHHhHHhhcCCcccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHH
Q 001731 452 ----------TQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKR 521 (1019)
Q Consensus 452 ----------s~~~kal~~l~~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~ 521 (1019)
...++.+.......+|+|||||..+. +. . |..|+....
T Consensus 563 ~~~~~~~~~~~~~yr~iL~yFdA~~IGLTATP~r~t----~~--------------~----FG~pv~~Ys---------- 610 (1123)
T PRK11448 563 ELQFRDQLDYVSKYRRVLDYFDAVKIGLTATPALHT----TE--------------I----FGEPVYTYS---------- 610 (1123)
T ss_pred hhccchhhhHHHHHHHHHhhcCccEEEEecCCccch----hH--------------H----hCCeeEEee----------
Confidence 12334444333357899999997432 11 1 112221111
Q ss_pred hhHHHHHHHHHHhH-HHHHHhhhhcccccCccccccccCccceEEEEEcCC--------HHHHHHHHHHHhhHHHhhhcC
Q 001731 522 IGSAVAKELRERIQ-PYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLT--------SCQRQLYEAFLNSEIVLSAFD 592 (1019)
Q Consensus 522 ~~~~~~~~L~~~i~-p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls--------~~Q~~lY~~~l~~~~~~~~~~ 592 (1019)
+.+.+. .|++. ..|+.. +...++ ..+...|+..... ....
T Consensus 611 --------l~eAI~DG~Lv~----------------~~~p~~---i~t~~~~~gi~~~~~e~~~~~~~~~~~-i~~~--- 659 (1123)
T PRK11448 611 --------YREAVIDGYLID----------------HEPPIR---IETRLSQEGIHFEKGEEVEVINTQTGE-IDLA--- 659 (1123)
T ss_pred --------HHHHHhcCCccc----------------CcCCEE---EEEEeccccccccccchhhhcchhhhh-hhhc---
Confidence 001110 00000 001111 111111 0111111111000 0000
Q ss_pred CChHHHHHHHHHHhcChhhhhhhhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHH-HHH
Q 001731 593 GSPLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILS-LLD 671 (1019)
Q Consensus 593 ~~~l~~l~~Lrkic~hP~ll~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~-LL~ 671 (1019)
..|. +..-....+...+ + .......+++ ++.
T Consensus 660 --------------~l~d--------------------~~~~~~~~~~~~v--------i------~~~~~~~i~~~l~~ 691 (1123)
T PRK11448 660 --------------TLED--------------------EVDFEVEDFNRRV--------I------TESFNRVVCEELAK 691 (1123)
T ss_pred --------------cCcH--------------------HHhhhHHHHHHHH--------h------hHHHHHHHHHHHHH
Confidence 0000 0000000000000 0 0001111111 222
Q ss_pred hhcc-CCCceeEecccHHHHHHHHHHHhhc------CC---eEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCccc
Q 001731 672 KLIP-EGHNVLIFSQTRKMLNLIQESIGSK------GY---KFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGL 741 (1019)
Q Consensus 672 ~~~~-~g~KvLIFsq~~~~ldiL~~~L~~~------gi---~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~ 741 (1019)
.+.. .+.|+||||.++..++.+...|... ++ .+..++|+++ ++.+++++|.++. .+.++++++..++
T Consensus 692 ~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~-~p~IlVsvdmL~T 768 (1123)
T PRK11448 692 YLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNER-LPNIVVTVDLLTT 768 (1123)
T ss_pred HHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCC-CCeEEEEeccccc
Confidence 1211 2479999999999988888776542 22 4567999886 6788999998865 4578899999999
Q ss_pred ccCcccCCEEEEcCCCCCchhhhhhhhhhhhhCC---CCcEEEEEEe
Q 001731 742 GLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQ---KKDVVVYRLM 785 (1019)
Q Consensus 742 GLNLt~A~~VIi~D~~WNp~~~~QaiGRa~RiGQ---~k~V~VyrLi 785 (1019)
|+|.+.+.+||++.|+-++..+.|++||+.|..- +..+.||.++
T Consensus 769 G~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~~~~~K~~f~I~D~v 815 (1123)
T PRK11448 769 GIDVPSICNLVFLRRVRSRILYEQMLGRATRLCPEIGKTHFRIFDAV 815 (1123)
T ss_pred CCCcccccEEEEecCCCCHHHHHHHHhhhccCCccCCCceEEEEehH
Confidence 9999999999999999999999999999999854 4556677654
No 50
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.90 E-value=4e-22 Score=249.27 Aligned_cols=308 Identities=14% Similarity=0.161 Sum_probs=202.6
Q ss_pred ccCCCchHHHHHHHHHHHhhcCC--CceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcc-cHHHHHHHHHHhcC
Q 001731 300 IGNMLFPHQREGLRWLWSLHCQG--KGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKT-LLSHWIKELTAVGL 376 (1019)
Q Consensus 300 i~~~L~phQ~egV~~L~~~~~~~--~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~s-Ll~qW~~E~~k~~~ 376 (1019)
+...+.|+|..++..+..-...+ ...+++.+||+|||.+++..+...... .+.++|+||+. |..|+...|.+++.
T Consensus 448 ~~f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~--g~qvlvLvPT~~LA~Q~~~~f~~~~~ 525 (926)
T TIGR00580 448 FPFEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD--GKQVAVLVPTTLLAQQHFETFKERFA 525 (926)
T ss_pred CCCCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh--CCeEEEEeCcHHHHHHHHHHHHHHhc
Confidence 44568999999999887744333 467999999999999866444333333 26899999995 56889999998765
Q ss_pred CCc--EEEEcccccc-hhhHHHHHhh-hCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcch
Q 001731 377 SAK--IREYFGTCVK-TRQYELQYVL-QDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPST 452 (1019)
Q Consensus 377 ~~~--v~~~~g~~~~-~~~~~~~~~~-~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s 452 (1019)
... +..+.+.... .+...+..+. +..+|||.|+..+..... -....+|||||+|++. .
T Consensus 526 ~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~---------------f~~L~llVIDEahrfg---v 587 (926)
T TIGR00580 526 NFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVK---------------FKDLGLLIIDEEQRFG---V 587 (926)
T ss_pred cCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCC---------------cccCCEEEeecccccc---h
Confidence 443 3334443222 2222222222 357999999976643211 2246899999999973 2
Q ss_pred HHhHHhhcCC-cccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHH
Q 001731 453 QRAKSLLEIP-SAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELR 531 (1019)
Q Consensus 453 ~~~kal~~l~-~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~~L~ 531 (1019)
.....+..++ ..+.++|||||+...+.. .+.....+
T Consensus 588 ~~~~~L~~~~~~~~vL~~SATpiprtl~~--~l~g~~d~----------------------------------------- 624 (926)
T TIGR00580 588 KQKEKLKELRTSVDVLTLSATPIPRTLHM--SMSGIRDL----------------------------------------- 624 (926)
T ss_pred hHHHHHHhcCCCCCEEEEecCCCHHHHHH--HHhcCCCc-----------------------------------------
Confidence 3334455554 457899999997532211 00000000
Q ss_pred HHhHHHHHHhhhhcccccCccccccccCccc---eEEEEEcCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcC
Q 001731 532 ERIQPYFLRRLKNEVFHEDDVTSSATLSKKN---EMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDH 608 (1019)
Q Consensus 532 ~~i~p~~lRR~k~dv~~~~~~~~~~~LP~k~---e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~h 608 (1019)
.++ ..|+.. .....+.... .
T Consensus 625 -------------s~I---------~~~p~~R~~V~t~v~~~~~--~--------------------------------- 647 (926)
T TIGR00580 625 -------------SII---------ATPPEDRLPVRTFVMEYDP--E--------------------------------- 647 (926)
T ss_pred -------------EEE---------ecCCCCccceEEEEEecCH--H---------------------------------
Confidence 000 001000 0001111110 0
Q ss_pred hhhhhhhhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhccCCCceeEecccHH
Q 001731 609 PLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRK 688 (1019)
Q Consensus 609 P~ll~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~ 688 (1019)
.+...+......+.+++|||+.+.
T Consensus 648 --------------------------------------------------------~i~~~i~~el~~g~qv~if~n~i~ 671 (926)
T TIGR00580 648 --------------------------------------------------------LVREAIRRELLRGGQVFYVHNRIE 671 (926)
T ss_pred --------------------------------------------------------HHHHHHHHHHHcCCeEEEEECCcH
Confidence 000001111124778999999999
Q ss_pred HHHHHHHHHhhc--CCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCCC-CCchhhhh
Q 001731 689 MLNLIQESIGSK--GYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPA-WNPSTDNQ 765 (1019)
Q Consensus 689 ~ldiL~~~L~~~--gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~-WNp~~~~Q 765 (1019)
.++.+...|... ++++..+||.|+..+|.+++++|.++... +|+||.+.++|||++.+++||+++++ +..+.+.|
T Consensus 672 ~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~--ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Q 749 (926)
T TIGR00580 672 SIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQ--VLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQ 749 (926)
T ss_pred HHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCC--EEEECChhhcccccccCCEEEEecCCCCCHHHHHH
Confidence 999999999874 78999999999999999999999999865 89999999999999999999999986 46678999
Q ss_pred hhhhhhhhCCCCcEEEEEEeeC
Q 001731 766 SVDRAYRIGQKKDVVVYRLMTC 787 (1019)
Q Consensus 766 aiGRa~RiGQ~k~V~VyrLit~ 787 (1019)
++||++|.|... ++|.|+..
T Consensus 750 r~GRvGR~g~~g--~aill~~~ 769 (926)
T TIGR00580 750 LRGRVGRSKKKA--YAYLLYPH 769 (926)
T ss_pred HhcCCCCCCCCe--EEEEEECC
Confidence 999999988754 44555544
No 51
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.90 E-value=7.6e-23 Score=239.75 Aligned_cols=314 Identities=16% Similarity=0.201 Sum_probs=220.4
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCc-ccHHHHHHHHHHhcCCCcE
Q 001731 302 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK-TLLSHWIKELTAVGLSAKI 380 (1019)
Q Consensus 302 ~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~-sLl~qW~~E~~k~~~~~~v 380 (1019)
..++|-|.++|..+.. ++.+|..++||.||++.. -|-++.. .+.+|||.|. +|+...++.+...+.. +
T Consensus 16 ~~FR~gQ~evI~~~l~----g~d~lvvmPTGgGKSlCy--QiPAll~---~G~TLVVSPLiSLM~DQV~~l~~~Gi~--A 84 (590)
T COG0514 16 ASFRPGQQEIIDALLS----GKDTLVVMPTGGGKSLCY--QIPALLL---EGLTLVVSPLISLMKDQVDQLEAAGIR--A 84 (590)
T ss_pred cccCCCHHHHHHHHHc----CCcEEEEccCCCCcchHh--hhHHHhc---CCCEEEECchHHHHHHHHHHHHHcCce--e
Confidence 4588999999998888 789999999999999632 1222222 4689999998 9999999999886632 2
Q ss_pred EEEcccccchhhHHHHHh--hhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcc-------
Q 001731 381 REYFGTCVKTRQYELQYV--LQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPS------- 451 (1019)
Q Consensus 381 ~~~~g~~~~~~~~~~~~~--~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~------- 451 (1019)
....++............ ....+++..+++.+.+..-.- .+......+++|||||++..++
T Consensus 85 ~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~----------~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y 154 (590)
T COG0514 85 AYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLE----------LLKRLPISLVAIDEAHCISQWGHDFRPDY 154 (590)
T ss_pred ehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHH----------HHHhCCCceEEechHHHHhhcCCccCHhH
Confidence 222222122222222222 234789999999987652110 1125567899999999996654
Q ss_pred hHHhHHhhcCCcccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHH
Q 001731 452 TQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELR 531 (1019)
Q Consensus 452 s~~~kal~~l~~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~~L~ 531 (1019)
.........++...+++||||.-.--..|+...|..-.+..+ ...|..|
T Consensus 155 ~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~------~~sfdRp------------------------- 203 (590)
T COG0514 155 RRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIF------RGSFDRP------------------------- 203 (590)
T ss_pred HHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceE------EecCCCc-------------------------
Confidence 344555566677788999999877777777777665433221 1111111
Q ss_pred HHhHHHHHHhhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcChhh
Q 001731 532 ERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLL 611 (1019)
Q Consensus 532 ~~i~p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~l 611 (1019)
. +|-.....
T Consensus 204 ----------------------------N----------------i~~~v~~~--------------------------- 212 (590)
T COG0514 204 ----------------------------N----------------LALKVVEK--------------------------- 212 (590)
T ss_pred ----------------------------h----------------hhhhhhhc---------------------------
Confidence 0 00000000
Q ss_pred hhhhhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhccCCCceeEecccHHHHH
Q 001731 612 LTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLN 691 (1019)
Q Consensus 612 l~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ld 691 (1019)
.+.-.++.++.. .....+...||||.++...+
T Consensus 213 ---------------------------------------------~~~~~q~~fi~~---~~~~~~~~GIIYc~sRk~~E 244 (590)
T COG0514 213 ---------------------------------------------GEPSDQLAFLAT---VLPQLSKSGIIYCLTRKKVE 244 (590)
T ss_pred ---------------------------------------------ccHHHHHHHHHh---hccccCCCeEEEEeeHHhHH
Confidence 000001122222 11224555899999999999
Q ss_pred HHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCCCCCchhhhhhhhhhh
Q 001731 692 LIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAY 771 (1019)
Q Consensus 692 iL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QaiGRa~ 771 (1019)
.++..|...|++...|||+++.++|..+.++|.+++.. ++++|.|.|+|||-++...|||||+|-+...|.|-+|||+
T Consensus 245 ~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~--iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAG 322 (590)
T COG0514 245 ELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIK--VMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAG 322 (590)
T ss_pred HHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCc--EEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhcc
Confidence 99999999999999999999999999999999998866 8999999999999999999999999999999999999999
Q ss_pred hhCCCCcEEEEEEeeCCCH
Q 001731 772 RIGQKKDVVVYRLMTCGTV 790 (1019)
Q Consensus 772 RiGQ~k~V~VyrLit~gTi 790 (1019)
|.|....+.+ |+..+.+
T Consensus 323 RDG~~a~ail--l~~~~D~ 339 (590)
T COG0514 323 RDGLPAEAIL--LYSPEDI 339 (590)
T ss_pred CCCCcceEEE--eeccccH
Confidence 9999887654 4444433
No 52
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.90 E-value=6.7e-22 Score=249.49 Aligned_cols=109 Identities=18% Similarity=0.228 Sum_probs=94.9
Q ss_pred hccCCCceeEecccHHHHHHHHHHHhhc------CCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcc
Q 001731 673 LIPEGHNVLIFSQTRKMLNLIQESIGSK------GYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLT 746 (1019)
Q Consensus 673 ~~~~g~KvLIFsq~~~~ldiL~~~L~~~------gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt 746 (1019)
+...++++||||+++..++.+...|... +..+..+||+++.++|..+.+.|+++... +|++|.+.++|||++
T Consensus 280 ~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~--vLVaTs~Le~GIDip 357 (876)
T PRK13767 280 LIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELK--VVVSSTSLELGIDIG 357 (876)
T ss_pred HHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCe--EEEECChHHhcCCCC
Confidence 3345778999999999999999888762 46789999999999999999999999854 888999999999999
Q ss_pred cCCEEEEcCCCCCchhhhhhhhhhhhh-CCCCcEEEEE
Q 001731 747 KADRVIVVDPAWNPSTDNQSVDRAYRI-GQKKDVVVYR 783 (1019)
Q Consensus 747 ~A~~VIi~D~~WNp~~~~QaiGRa~Ri-GQ~k~V~Vyr 783 (1019)
.++.||+|++|.+...+.||+||++|. |......++-
T Consensus 358 ~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~ 395 (876)
T PRK13767 358 YIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIV 395 (876)
T ss_pred CCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEE
Confidence 999999999999999999999999986 4545555554
No 53
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=3.9e-22 Score=221.77 Aligned_cols=371 Identities=18% Similarity=0.191 Sum_probs=229.2
Q ss_pred ccCCCchHHHHHHHHHHHhhc-----CCCceEEEcCCCchHHHH-HHHHHHHHhhcCCCC-eEEEEeCcc-cHHHHHHHH
Q 001731 300 IGNMLFPHQREGLRWLWSLHC-----QGKGGILGDDMGLGKTMQ-ICGFLAGLFHSRLIK-RALVVAPKT-LLSHWIKEL 371 (1019)
Q Consensus 300 i~~~L~phQ~egV~~L~~~~~-----~~~GgILaDemGLGKTlq-aIali~~l~~~~~~~-~~LIVvP~s-Ll~qW~~E~ 371 (1019)
....+||.|...+.|++.-.. +.+...+..+||+|||+. +|.++..+..+.... +++||+|+. |..|..++|
T Consensus 156 ~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f 235 (620)
T KOG0350|consen 156 AISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTF 235 (620)
T ss_pred hcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHH
Confidence 345799999999999976543 123446677999999998 777777665554333 899999995 568999999
Q ss_pred HHhcCCCcEEEEcccccchhhHHHHHhhh-----CCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcc
Q 001731 372 TAVGLSAKIREYFGTCVKTRQYELQYVLQ-----DKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHL 446 (1019)
Q Consensus 372 ~k~~~~~~v~~~~g~~~~~~~~~~~~~~~-----~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~ 446 (1019)
.+|+++..+.+..-...+.-..+...... ..||+|+|++.++.+..... ++......++|||||.+
T Consensus 236 ~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k---------~f~Lk~LrfLVIDEADR 306 (620)
T KOG0350|consen 236 KRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTK---------SFDLKHLRFLVIDEADR 306 (620)
T ss_pred HHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCC---------CcchhhceEEEechHHH
Confidence 99999887766554444433333333322 23899999999998876432 23456678999999999
Q ss_pred cCCcchHHhH--HhhcCCcccEEEeecC-------CCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhh
Q 001731 447 IKNPSTQRAK--SLLEIPSAHRIIISGT-------PIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALD 517 (1019)
Q Consensus 447 iKN~~s~~~k--al~~l~~~~RllLTGT-------PiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~ 517 (1019)
+.+...+-|- .+..++...++.+.+- |...-+.++.+.+.-+-|.
T Consensus 307 ll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~-------------------------- 360 (620)
T KOG0350|consen 307 LLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPP-------------------------- 360 (620)
T ss_pred HHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCch--------------------------
Confidence 9886665443 2333333333322111 1111112222211000000
Q ss_pred HHHHhhHHHHHHHHHHhHHHHHHhhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhHHHhhhcCCChHH
Q 001731 518 REKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLA 597 (1019)
Q Consensus 518 ~e~~~~~~~~~~L~~~i~p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~ 597 (1019)
|..++.+-.+.+.-..+..- ....|... .+.-+ +.
T Consensus 361 ------------l~kL~~satLsqdP~Kl~~l-----~l~~Prl~--~v~~~--------------------------~~ 395 (620)
T KOG0350|consen 361 ------------LWKLVFSATLSQDPSKLKDL-----TLHIPRLF--HVSKP--------------------------LI 395 (620)
T ss_pred ------------hHhhhcchhhhcChHHHhhh-----hcCCCceE--Eeecc--------------------------cc
Confidence 11111111111111000000 00011000 00000 00
Q ss_pred HHHHHHHHhcChhhhhhhhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhccCC
Q 001731 598 ALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEG 677 (1019)
Q Consensus 598 ~l~~Lrkic~hP~ll~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g 677 (1019)
....+-.-..|-.+ ....--|...+..+|..+ +.
T Consensus 396 ~ryslp~~l~~~~v--------------------------------------------v~~~~~kpl~~~~lI~~~--k~ 429 (620)
T KOG0350|consen 396 GRYSLPSSLSHRLV--------------------------------------------VTEPKFKPLAVYALITSN--KL 429 (620)
T ss_pred eeeecChhhhhcee--------------------------------------------ecccccchHhHHHHHHHh--hc
Confidence 00000000000000 000112555666666665 57
Q ss_pred CceeEecccHHHHHHHHHHHh----hcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEE
Q 001731 678 HNVLIFSQTRKMLNLIQESIG----SKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIV 753 (1019)
Q Consensus 678 ~KvLIFsq~~~~ldiL~~~L~----~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi 753 (1019)
.++|+|+.+......+...|+ ..+.++..++|+.+.+.|.+++++|+.+... +||+++++++|+|+.+.+.||+
T Consensus 430 ~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~--vLIcSD~laRGiDv~~v~~VIN 507 (620)
T KOG0350|consen 430 NRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDIN--VLICSDALARGIDVNDVDNVIN 507 (620)
T ss_pred ceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCce--EEEehhhhhcCCcccccceEee
Confidence 789999999999988888887 3467778899999999999999999999876 8888999999999999999999
Q ss_pred cCCCCCchhhhhhhhhhhhhCCCCcEEEEEEeeCCCHHHHHHHHHHHHH
Q 001731 754 VDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKG 802 (1019)
Q Consensus 754 ~D~~WNp~~~~QaiGRa~RiGQ~k~V~VyrLit~gTiEEkI~~rq~~K~ 802 (1019)
||||-.-..|++|+||+.|.||.- ++|.|+... |++.|.....|.
T Consensus 508 Yd~P~~~ktyVHR~GRTARAgq~G--~a~tll~~~--~~r~F~klL~~~ 552 (620)
T KOG0350|consen 508 YDPPASDKTYVHRAGRTARAGQDG--YAITLLDKH--EKRLFSKLLKKT 552 (620)
T ss_pred cCCCchhhHHHHhhcccccccCCc--eEEEeeccc--cchHHHHHHHHh
Confidence 999999999999999999999965 455666544 555555554443
No 54
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.89 E-value=4.4e-21 Score=244.77 Aligned_cols=306 Identities=15% Similarity=0.175 Sum_probs=199.5
Q ss_pred ccCCCchHHHHHHHHHHHhhcC--CCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCccc-HHHHHHHHHHhcC
Q 001731 300 IGNMLFPHQREGLRWLWSLHCQ--GKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTL-LSHWIKELTAVGL 376 (1019)
Q Consensus 300 i~~~L~phQ~egV~~L~~~~~~--~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sL-l~qW~~E~~k~~~ 376 (1019)
+...+.|.|..++.-+..-... ....+++.+||+|||.+++-.+..... ..+++||+||+.. ..|+...|.+++.
T Consensus 597 ~~~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~--~g~qvlvLvPT~eLA~Q~~~~f~~~~~ 674 (1147)
T PRK10689 597 FPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE--NHKQVAVLVPTTLLAQQHYDNFRDRFA 674 (1147)
T ss_pred CCCCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH--cCCeEEEEeCcHHHHHHHHHHHHHhhc
Confidence 3447899999999887764322 357899999999999886643333222 3468999999954 5888888887554
Q ss_pred C--CcEEEEcccccchhhHH-HHHhh-hCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcch
Q 001731 377 S--AKIREYFGTCVKTRQYE-LQYVL-QDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPST 452 (1019)
Q Consensus 377 ~--~~v~~~~g~~~~~~~~~-~~~~~-~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s 452 (1019)
. ..+..+.+......+.. +.... +..+|||.|+..+..... ...+++|||||+|++..
T Consensus 675 ~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~---------------~~~L~lLVIDEahrfG~--- 736 (1147)
T PRK10689 675 NWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVK---------------WKDLGLLIVDEEHRFGV--- 736 (1147)
T ss_pred cCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCC---------------HhhCCEEEEechhhcch---
Confidence 3 34444444333322222 22222 357999999987753221 23478999999999832
Q ss_pred HHhHHhhcCC-cccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHH
Q 001731 453 QRAKSLLEIP-SAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELR 531 (1019)
Q Consensus 453 ~~~kal~~l~-~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~~L~ 531 (1019)
.....++.++ ....+++||||++..+.-. +..+.++.
T Consensus 737 ~~~e~lk~l~~~~qvLl~SATpiprtl~l~--~~gl~d~~---------------------------------------- 774 (1147)
T PRK10689 737 RHKERIKAMRADVDILTLTATPIPRTLNMA--MSGMRDLS---------------------------------------- 774 (1147)
T ss_pred hHHHHHHhcCCCCcEEEEcCCCCHHHHHHH--HhhCCCcE----------------------------------------
Confidence 2233445554 4577999999976432110 00000000
Q ss_pred HHhHHHHHHhhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcChhh
Q 001731 532 ERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLL 611 (1019)
Q Consensus 532 ~~i~p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~l 611 (1019)
++...+ ...+|- ..+.......
T Consensus 775 --------------~I~~~p---~~r~~v---~~~~~~~~~~-------------------------------------- 796 (1147)
T PRK10689 775 --------------IIATPP---ARRLAV---KTFVREYDSL-------------------------------------- 796 (1147)
T ss_pred --------------EEecCC---CCCCCc---eEEEEecCcH--------------------------------------
Confidence 000000 000000 0000000000
Q ss_pred hhhhhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhccCCCceeEecccHHHHH
Q 001731 612 LTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLN 691 (1019)
Q Consensus 612 l~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ld 691 (1019)
..|.. ++.++. .+++++|||+.+..++
T Consensus 797 ------------------------------------------------~~k~~----il~el~-r~gqv~vf~n~i~~ie 823 (1147)
T PRK10689 797 ------------------------------------------------VVREA----ILREIL-RGGQVYYLYNDVENIQ 823 (1147)
T ss_pred ------------------------------------------------HHHHH----HHHHHh-cCCeEEEEECCHHHHH
Confidence 00111 111221 3678999999999999
Q ss_pred HHHHHHhhc--CCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCCC-CCchhhhhhhh
Q 001731 692 LIQESIGSK--GYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPA-WNPSTDNQSVD 768 (1019)
Q Consensus 692 iL~~~L~~~--gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~-WNp~~~~QaiG 768 (1019)
.+...|... ++++..+||+|+..+|.+++.+|.++... +|++|.+.++|||++.+++||+.+++ |+.+.+.|++|
T Consensus 824 ~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~--VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~G 901 (1147)
T PRK10689 824 KAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFN--VLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRG 901 (1147)
T ss_pred HHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCC--EEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhh
Confidence 999999876 78999999999999999999999998855 88899999999999999999988774 68889999999
Q ss_pred hhhhhCCCCcEE
Q 001731 769 RAYRIGQKKDVV 780 (1019)
Q Consensus 769 Ra~RiGQ~k~V~ 780 (1019)
|++|.|.+.-|+
T Consensus 902 RvGR~g~~g~a~ 913 (1147)
T PRK10689 902 RVGRSHHQAYAW 913 (1147)
T ss_pred ccCCCCCceEEE
Confidence 999998765443
No 55
>PRK02362 ski2-like helicase; Provisional
Probab=99.88 E-value=4.7e-21 Score=239.39 Aligned_cols=318 Identities=19% Similarity=0.185 Sum_probs=201.5
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCc-ccHHHHHHHHHHhcC-CCc
Q 001731 302 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK-TLLSHWIKELTAVGL-SAK 379 (1019)
Q Consensus 302 ~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~-sLl~qW~~E~~k~~~-~~~ 379 (1019)
..|+|+|.+++..++. .+++++++.+||+|||+.+...+..... ..+++|+|+|. .|+.|+..+|.++.+ +.+
T Consensus 22 ~~l~p~Q~~ai~~~~~---~g~nvlv~APTGSGKTlia~lail~~l~--~~~kal~i~P~raLa~q~~~~~~~~~~~g~~ 96 (737)
T PRK02362 22 EELYPPQAEAVEAGLL---DGKNLLAAIPTASGKTLIAELAMLKAIA--RGGKALYIVPLRALASEKFEEFERFEELGVR 96 (737)
T ss_pred CcCCHHHHHHHHHHHh---CCCcEEEECCCcchHHHHHHHHHHHHHh--cCCcEEEEeChHHHHHHHHHHHHHhhcCCCE
Confidence 4699999999975332 4789999999999999986543333222 34689999998 788999999987643 455
Q ss_pred EEEEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcch-HHh---
Q 001731 380 IREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPST-QRA--- 455 (1019)
Q Consensus 380 v~~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s-~~~--- 455 (1019)
+..+.|...... ......+|+|+||+.+........ .+ ....++||+||+|.+.+... ...
T Consensus 97 v~~~tGd~~~~~-----~~l~~~~IiV~Tpek~~~llr~~~--~~--------l~~v~lvViDE~H~l~d~~rg~~le~i 161 (737)
T PRK02362 97 VGISTGDYDSRD-----EWLGDNDIIVATSEKVDSLLRNGA--PW--------LDDITCVVVDEVHLIDSANRGPTLEVT 161 (737)
T ss_pred EEEEeCCcCccc-----cccCCCCEEEECHHHHHHHHhcCh--hh--------hhhcCEEEEECccccCCCcchHHHHHH
Confidence 666666433222 123568999999998755433110 00 12468999999999975432 111
Q ss_pred -HHhhcC-CcccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHHHH
Q 001731 456 -KSLLEI-PSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRER 533 (1019)
Q Consensus 456 -kal~~l-~~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~~L~~~ 533 (1019)
..++.+ +..+.++||||+- +..++...++ ...+. ..| .|+
T Consensus 162 l~rl~~~~~~~qii~lSATl~--n~~~la~wl~---~~~~~------~~~-rpv-------------------------- 203 (737)
T PRK02362 162 LAKLRRLNPDLQVVALSATIG--NADELADWLD---AELVD------SEW-RPI-------------------------- 203 (737)
T ss_pred HHHHHhcCCCCcEEEEcccCC--CHHHHHHHhC---CCccc------CCC-CCC--------------------------
Confidence 112222 3456788999973 4666554332 11110 000 000
Q ss_pred hHHHHHHhhhhcccccCccccccccCccceEEEEEc----CCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcCh
Q 001731 534 IQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLR----LTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHP 609 (1019)
Q Consensus 534 i~p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~----ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP 609 (1019)
| ....++.. ....++.
T Consensus 204 -------------------------~--l~~~v~~~~~~~~~~~~~~--------------------------------- 223 (737)
T PRK02362 204 -------------------------D--LREGVFYGGAIHFDDSQRE--------------------------------- 223 (737)
T ss_pred -------------------------C--CeeeEecCCeecccccccc---------------------------------
Confidence 0 00000000 0000000
Q ss_pred hhhhhhhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhccCCCceeEecccHHH
Q 001731 610 LLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKM 689 (1019)
Q Consensus 610 ~ll~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ 689 (1019)
+ . ......++..+.+.+ ..++++||||.++..
T Consensus 224 -~-~------------------------------------------~~~~~~~~~~~~~~~----~~~~~~LVF~~sr~~ 255 (737)
T PRK02362 224 -V-E------------------------------------------VPSKDDTLNLVLDTL----EEGGQCLVFVSSRRN 255 (737)
T ss_pred -C-C------------------------------------------CccchHHHHHHHHHH----HcCCCeEEEEeCHHH
Confidence 0 0 000001122222222 357889999999987
Q ss_pred HHHHHHHHhhc------------------------------------CCeEEEEECCCCHHHHHHHHHhhhcCCCccEEE
Q 001731 690 LNLIQESIGSK------------------------------------GYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFL 733 (1019)
Q Consensus 690 ldiL~~~L~~~------------------------------------gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~L 733 (1019)
+..++..|... ...+..+||+++..+|..+.+.|++|... +|
T Consensus 256 ~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~--VL 333 (737)
T PRK02362 256 AEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIK--VI 333 (737)
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCe--EE
Confidence 77666655432 13678899999999999999999998855 89
Q ss_pred EecCCcccccCcccCCEEEE----cC-----CCCCchhhhhhhhhhhhhCCCCcEEEEEEeeC
Q 001731 734 LTSQVGGLGLTLTKADRVIV----VD-----PAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTC 787 (1019)
Q Consensus 734 lST~agg~GLNLt~A~~VIi----~D-----~~WNp~~~~QaiGRa~RiGQ~k~V~VyrLit~ 787 (1019)
++|.+.+.|+|+++.+.||. || .|.++..+.|++|||+|.|....-.++-++..
T Consensus 334 vaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~ 396 (737)
T PRK02362 334 SSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKS 396 (737)
T ss_pred EechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecC
Confidence 99999999999999887776 77 57788999999999999998765555555544
No 56
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.86 E-value=2e-21 Score=216.02 Aligned_cols=325 Identities=17% Similarity=0.228 Sum_probs=213.6
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHH-HHHHHHHHhhcCC---CCeEEEEeCcccH----HHHHHHHHHh
Q 001731 303 MLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQ-ICGFLAGLFHSRL---IKRALVVAPKTLL----SHWIKELTAV 374 (1019)
Q Consensus 303 ~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlq-aIali~~l~~~~~---~~~~LIVvP~sLl----~qW~~E~~k~ 374 (1019)
.+.|.|...|.-.+- |+..+-|..||+|||-. ++.++-.+++.+. ..++||+||+.-| ++..+.+..|
T Consensus 203 ~PTpIQ~a~IPvall----gkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqF 278 (691)
T KOG0338|consen 203 KPTPIQVATIPVALL----GKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQF 278 (691)
T ss_pred CCCchhhhcccHHhh----cchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhh
Confidence 455788887764444 56666777999999977 6666766665443 3489999998533 4455566666
Q ss_pred cCCCcEEEEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcchH-
Q 001731 375 GLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQ- 453 (1019)
Q Consensus 375 ~~~~~v~~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s~- 453 (1019)
+. ..+....|.-.-..+.. ......||||.|++.+..+...... +......++|+|||.++...+..
T Consensus 279 t~-I~~~L~vGGL~lk~QE~--~LRs~PDIVIATPGRlIDHlrNs~s---------f~ldsiEVLvlDEADRMLeegFad 346 (691)
T KOG0338|consen 279 TD-ITVGLAVGGLDLKAQEA--VLRSRPDIVIATPGRLIDHLRNSPS---------FNLDSIEVLVLDEADRMLEEGFAD 346 (691)
T ss_pred cc-ceeeeeecCccHHHHHH--HHhhCCCEEEecchhHHHHhccCCC---------ccccceeEEEechHHHHHHHHHHH
Confidence 54 44444445433332222 2335689999999999877654332 33455778999999999654432
Q ss_pred HhHHhhcCCccc--EEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHH
Q 001731 454 RAKSLLEIPSAH--RIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELR 531 (1019)
Q Consensus 454 ~~kal~~l~~~~--RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~~L~ 531 (1019)
-..-+..+.+.+ .++.|||- ...+.||.++- ..+|+
T Consensus 347 emnEii~lcpk~RQTmLFSATM-teeVkdL~slS-----------------L~kPv------------------------ 384 (691)
T KOG0338|consen 347 EMNEIIRLCPKNRQTMLFSATM-TEEVKDLASLS-----------------LNKPV------------------------ 384 (691)
T ss_pred HHHHHHHhccccccceeehhhh-HHHHHHHHHhh-----------------cCCCe------------------------
Confidence 222333344443 48888885 33444444331 01111
Q ss_pred HHhHHHHHHhhhhcccccCccccccccCccceEEEEEcCCH-HHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcChh
Q 001731 532 ERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTS-CQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPL 610 (1019)
Q Consensus 532 ~~i~p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~-~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~ 610 (1019)
.+++..+. .-..+-+.|+.- | |
T Consensus 385 ---------------------------------rifvd~~~~~a~~LtQEFiRI------------------R-----~- 407 (691)
T KOG0338|consen 385 ---------------------------------RIFVDPNKDTAPKLTQEFIRI------------------R-----P- 407 (691)
T ss_pred ---------------------------------EEEeCCccccchhhhHHHhee------------------c-----c-
Confidence 11111100 000011111100 0 0
Q ss_pred hhhhhhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhccCCCceeEecccHHHH
Q 001731 611 LLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKML 690 (1019)
Q Consensus 611 ll~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~l 690 (1019)
....-+-.+|..|+.... ..+++||.+....+
T Consensus 408 ----------------------------------------------~re~dRea~l~~l~~rtf--~~~~ivFv~tKk~A 439 (691)
T KOG0338|consen 408 ----------------------------------------------KREGDREAMLASLITRTF--QDRTIVFVRTKKQA 439 (691)
T ss_pred ----------------------------------------------ccccccHHHHHHHHHHhc--ccceEEEEehHHHH
Confidence 000113344555555554 45799999999999
Q ss_pred HHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCCCCCchhhhhhhhhh
Q 001731 691 NLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRA 770 (1019)
Q Consensus 691 diL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QaiGRa 770 (1019)
..+.-.|...|+++.-+||+.++.+|...+..|+..... +|++|+++++||++.++.+||+|+.|-+...|++|+||+
T Consensus 440 HRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eid--vLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRT 517 (691)
T KOG0338|consen 440 HRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEID--VLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRT 517 (691)
T ss_pred HHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCC--EEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhh
Confidence 999999999999999999999999999999999998866 899999999999999999999999999999999999999
Q ss_pred hhhCCCCcEEEEEEeeCCCHHHHHHH
Q 001731 771 YRIGQKKDVVVYRLMTCGTVEEKIYR 796 (1019)
Q Consensus 771 ~RiGQ~k~V~VyrLit~gTiEEkI~~ 796 (1019)
.|.|..- +...|+..+ |-+|++
T Consensus 518 ARAGRaG--rsVtlvgE~--dRkllK 539 (691)
T KOG0338|consen 518 ARAGRAG--RSVTLVGES--DRKLLK 539 (691)
T ss_pred hhcccCc--ceEEEeccc--cHHHHH
Confidence 9999753 233456655 444443
No 57
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.86 E-value=1.5e-20 Score=210.03 Aligned_cols=124 Identities=22% Similarity=0.349 Sum_probs=111.4
Q ss_pred hhhhHHHHHHHHHhhccCCCceeEecccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCC
Q 001731 659 ISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQV 738 (1019)
Q Consensus 659 ~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~a 738 (1019)
.+.|...|+++|... -...+|||.+..+.++.|++.|.+.||+++++||+-++++|..++..|+++... +|++|++
T Consensus 501 ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~d--IlVaTDv 576 (673)
T KOG0333|consen 501 EDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGD--ILVATDV 576 (673)
T ss_pred chHHHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCC--EEEEecc
Confidence 355788888988876 355799999999999999999999999999999999999999999999998766 8999999
Q ss_pred cccccCcccCCEEEEcCCCCCchhhhhhhhhhhhhCCCCcEEEEEEeeCC
Q 001731 739 GGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCG 788 (1019)
Q Consensus 739 gg~GLNLt~A~~VIi~D~~WNp~~~~QaiGRa~RiGQ~k~V~VyrLit~g 788 (1019)
+|+||+++.+++||+||.+-+...|.+||||++|.|+.-.++ .|++..
T Consensus 577 AgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~Gtai--Sflt~~ 624 (673)
T KOG0333|consen 577 AGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAI--SFLTPA 624 (673)
T ss_pred cccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeE--EEeccc
Confidence 999999999999999999999999999999999999976544 344443
No 58
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.86 E-value=8.9e-20 Score=220.31 Aligned_cols=128 Identities=15% Similarity=0.184 Sum_probs=108.7
Q ss_pred hhhhHHHHHHHHHhhccCCCceeEecccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCC
Q 001731 659 ISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQV 738 (1019)
Q Consensus 659 ~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~a 738 (1019)
...|+.++.+.+..+...+.++||||.++...+.+...|...|+++..++|.+...+|..+...|+.+. ++++|..
T Consensus 406 ~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g~----VlIATdm 481 (762)
T TIGR03714 406 LPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKGA----VTVATSM 481 (762)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCCe----EEEEccc
Confidence 466999999999988888999999999999999999999999999999999999888877777766653 8899999
Q ss_pred cccccCcc---------cCCEEEEcCCCCCchhhhhhhhhhhhhCCCCcEEEEEEeeCCCHHHHHHH
Q 001731 739 GGLGLTLT---------KADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYR 796 (1019)
Q Consensus 739 gg~GLNLt---------~A~~VIi~D~~WNp~~~~QaiGRa~RiGQ~k~V~VyrLit~gTiEEkI~~ 796 (1019)
+|+|+|+. +.+.||.|++|-+... .|++||++|.|..-.+.. |++ .|+.+++
T Consensus 482 AgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~--~is---~eD~l~~ 542 (762)
T TIGR03714 482 AGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQF--FVS---LEDDLIK 542 (762)
T ss_pred cccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEE--EEc---cchhhhh
Confidence 99999998 8899999999977655 999999999998766443 333 3555554
No 59
>PRK01172 ski2-like helicase; Provisional
Probab=99.86 E-value=5.2e-20 Score=228.33 Aligned_cols=312 Identities=19% Similarity=0.197 Sum_probs=194.2
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCc-ccHHHHHHHHHHhcC-CCcE
Q 001731 303 MLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK-TLLSHWIKELTAVGL-SAKI 380 (1019)
Q Consensus 303 ~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~-sLl~qW~~E~~k~~~-~~~v 380 (1019)
.|+|+|.+++..+.. +.+.|++.+||+|||+++...+...... .+++|+|+|. .|..|+.+++.++.. +..+
T Consensus 22 ~l~~~Q~~ai~~l~~----~~nvlv~apTGSGKTl~a~lail~~l~~--~~k~v~i~P~raLa~q~~~~~~~l~~~g~~v 95 (674)
T PRK01172 22 ELYDHQRMAIEQLRK----GENVIVSVPTAAGKTLIAYSAIYETFLA--GLKSIYIVPLRSLAMEKYEELSRLRSLGMRV 95 (674)
T ss_pred CCCHHHHHHHHHHhc----CCcEEEECCCCchHHHHHHHHHHHHHHh--CCcEEEEechHHHHHHHHHHHHHHhhcCCeE
Confidence 589999999987644 7889999999999999876554443333 3689999998 677889998887642 3445
Q ss_pred EEEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcch-HHhH---
Q 001731 381 REYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPST-QRAK--- 456 (1019)
Q Consensus 381 ~~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s-~~~k--- 456 (1019)
....|...... ......+|+|+|++.+........ .....+++||+||+|.+..... ....
T Consensus 96 ~~~~G~~~~~~-----~~~~~~dIiv~Tpek~~~l~~~~~----------~~l~~v~lvViDEaH~l~d~~rg~~le~ll 160 (674)
T PRK01172 96 KISIGDYDDPP-----DFIKRYDVVILTSEKADSLIHHDP----------YIINDVGLIVADEIHIIGDEDRGPTLETVL 160 (674)
T ss_pred EEEeCCCCCCh-----hhhccCCEEEECHHHHHHHHhCCh----------hHHhhcCEEEEecchhccCCCccHHHHHHH
Confidence 55555433221 123567999999987654332111 0123478999999999965321 1112
Q ss_pred -HhhcCC-cccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHHHHh
Q 001731 457 -SLLEIP-SAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERI 534 (1019)
Q Consensus 457 -al~~l~-~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~~L~~~i 534 (1019)
.++.+. ..+.++||||+- +..++.. |+....+. ..+
T Consensus 161 ~~~~~~~~~~riI~lSATl~--n~~~la~---wl~~~~~~------~~~------------------------------- 198 (674)
T PRK01172 161 SSARYVNPDARILALSATVS--NANELAQ---WLNASLIK------SNF------------------------------- 198 (674)
T ss_pred HHHHhcCcCCcEEEEeCccC--CHHHHHH---HhCCCccC------CCC-------------------------------
Confidence 122233 345688999973 3444432 22211100 000
Q ss_pred HHHHHHhhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcChhhhhh
Q 001731 535 QPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLTK 614 (1019)
Q Consensus 535 ~p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~ll~~ 614 (1019)
...|-. ..+++.. ..| ... ..
T Consensus 199 ---------------------r~vpl~-~~i~~~~------~~~---~~~------~~---------------------- 219 (674)
T PRK01172 199 ---------------------RPVPLK-LGILYRK------RLI---LDG------YE---------------------- 219 (674)
T ss_pred ---------------------CCCCeE-EEEEecC------eee---ecc------cc----------------------
Confidence 000100 0010000 000 000 00
Q ss_pred hhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhccCCCceeEecccHHHHHHHH
Q 001731 615 RAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQ 694 (1019)
Q Consensus 615 ~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~ 694 (1019)
..+ ..+..++......++++|||+..+.....++
T Consensus 220 ---------------------------------------------~~~-~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a 253 (674)
T PRK01172 220 ---------------------------------------------RSQ-VDINSLIKETVNDGGQVLVFVSSRKNAEDYA 253 (674)
T ss_pred ---------------------------------------------ccc-ccHHHHHHHHHhCCCcEEEEeccHHHHHHHH
Confidence 000 0012223333346788999999998877777
Q ss_pred HHHhhc-------------------------CCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCC
Q 001731 695 ESIGSK-------------------------GYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKAD 749 (1019)
Q Consensus 695 ~~L~~~-------------------------gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~ 749 (1019)
..|... ...+..+||+++..+|..+.+.|+++... +|++|.+.+.|+|+++ .
T Consensus 254 ~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~--VLvaT~~la~Gvnipa-~ 330 (674)
T PRK01172 254 EMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIK--VIVATPTLAAGVNLPA-R 330 (674)
T ss_pred HHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCe--EEEecchhhccCCCcc-e
Confidence 666432 12467889999999999999999998755 8899999999999996 6
Q ss_pred EEEEcCC---------CCCchhhhhhhhhhhhhCCCCcEEEEEEe
Q 001731 750 RVIVVDP---------AWNPSTDNQSVDRAYRIGQKKDVVVYRLM 785 (1019)
Q Consensus 750 ~VIi~D~---------~WNp~~~~QaiGRa~RiGQ~k~V~VyrLi 785 (1019)
+||+++. ++++..+.|++|||+|.|.......+-++
T Consensus 331 ~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~ 375 (674)
T PRK01172 331 LVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYA 375 (674)
T ss_pred EEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEe
Confidence 7888764 35778899999999999976654333333
No 60
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=6.2e-21 Score=198.76 Aligned_cols=316 Identities=21% Similarity=0.233 Sum_probs=217.9
Q ss_pred hHHHHHHHHHHHhhcCCCceEEEcCCCchHHHH-HHHHHHHHhhcCCCCeEEEEeCcccH-HHHHHHHHHhcCCCcEEEE
Q 001731 306 PHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQ-ICGFLAGLFHSRLIKRALVVAPKTLL-SHWIKELTAVGLSAKIREY 383 (1019)
Q Consensus 306 phQ~egV~~L~~~~~~~~GgILaDemGLGKTlq-aIali~~l~~~~~~~~~LIVvP~sLl-~qW~~E~~k~~~~~~v~~~ 383 (1019)
..|..++.-+++ |+..|.-...|+|||.+ +|+++..+--......+||+.|+.-+ .|-.+-+...+....+..+
T Consensus 52 ~IQqrAi~~Ilk----GrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~h 127 (400)
T KOG0328|consen 52 AIQQRAIPQILK----GRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVILALGDYMNVQCH 127 (400)
T ss_pred HHHhhhhhhhhc----ccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHHHHHhcccccceEE
Confidence 468888877776 88889989999999987 66666655444333579999999544 6666667766555544433
Q ss_pred cccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCc--chHHhHHhhcC
Q 001731 384 FGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNP--STQRAKSLLEI 461 (1019)
Q Consensus 384 ~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~--~s~~~kal~~l 461 (1019)
.....+.-...+.+.--..+||.-|++.+..-.+.- .+......++|+|||..+.|. ..+++...+.+
T Consensus 128 acigg~n~gedikkld~G~hvVsGtPGrv~dmikr~----------~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~l 197 (400)
T KOG0328|consen 128 ACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRR----------SLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYL 197 (400)
T ss_pred EEecCCccchhhhhhcccceEeeCCCchHHHHHHhc----------cccccceeEEEeccHHHHHHhhHHHHHHHHHHhC
Confidence 222112212222333334578888988876544321 233556789999999998664 56788888888
Q ss_pred C-cccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHHHHhHHHHHH
Q 001731 462 P-SAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLR 540 (1019)
Q Consensus 462 ~-~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~~L~~~i~p~~lR 540 (1019)
+ ....+++|||- +.|+..+.++..+++..
T Consensus 198 p~~~Qvv~~SATl----p~eilemt~kfmtdpvr---------------------------------------------- 227 (400)
T KOG0328|consen 198 PPGAQVVLVSATL----PHEILEMTEKFMTDPVR---------------------------------------------- 227 (400)
T ss_pred CCCceEEEEeccC----cHHHHHHHHHhcCCcee----------------------------------------------
Confidence 7 56678899995 23444444333222110
Q ss_pred hhhhcccccCccccccccCccceEEEEEcCCHH-HHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcChhhhhhhhhhh
Q 001731 541 RLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSC-QRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAED 619 (1019)
Q Consensus 541 R~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~-Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~ll~~~~~~~ 619 (1019)
..+-.-.++-+ -+++|-+.
T Consensus 228 ----------------------ilvkrdeltlEgIKqf~v~v-------------------------------------- 247 (400)
T KOG0328|consen 228 ----------------------ILVKRDELTLEGIKQFFVAV-------------------------------------- 247 (400)
T ss_pred ----------------------EEEecCCCchhhhhhheeee--------------------------------------
Confidence 00000011111 01111000
Q ss_pred hhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhccCCCceeEecccHHHHHHHHHHHhh
Q 001731 620 VLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGS 699 (1019)
Q Consensus 620 ~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~~~L~~ 699 (1019)
.....|...|+.|...+ .=...+|||+.+...++|.+.+..
T Consensus 248 -------------------------------------e~EewKfdtLcdLYd~L--tItQavIFcnTk~kVdwLtekm~~ 288 (400)
T KOG0328|consen 248 -------------------------------------EKEEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMRE 288 (400)
T ss_pred -------------------------------------chhhhhHhHHHHHhhhh--ehheEEEEecccchhhHHHHHHHh
Confidence 01122666666666555 234589999999999999999999
Q ss_pred cCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCCCCCchhhhhhhhhhhhhCCCCcE
Q 001731 700 KGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDV 779 (1019)
Q Consensus 700 ~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QaiGRa~RiGQ~k~V 779 (1019)
.++.+..+||.|++++|.+++..|+++.+. +|++|++-++|++.+..+.||+||+|-|+..|++|+||.+|.|.+-
T Consensus 289 ~nftVssmHGDm~qkERd~im~dFRsg~Sr--vLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkG-- 364 (400)
T KOG0328|consen 289 ANFTVSSMHGDMEQKERDKIMNDFRSGKSR--VLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKG-- 364 (400)
T ss_pred hCceeeeccCCcchhHHHHHHHHhhcCCce--EEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcc--
Confidence 999999999999999999999999999876 9999999999999999999999999999999999999999999865
Q ss_pred EEEEEeeCC
Q 001731 780 VVYRLMTCG 788 (1019)
Q Consensus 780 ~VyrLit~g 788 (1019)
.+..|+...
T Consensus 365 vainFVk~~ 373 (400)
T KOG0328|consen 365 VAINFVKSD 373 (400)
T ss_pred eEEEEecHH
Confidence 344555544
No 61
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.85 E-value=3.1e-20 Score=210.76 Aligned_cols=316 Identities=19% Similarity=0.257 Sum_probs=210.3
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHH-HHHHHHHHhhcCC----------CCeEEEEeCc-ccHHHHHH
Q 001731 302 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQ-ICGFLAGLFHSRL----------IKRALVVAPK-TLLSHWIK 369 (1019)
Q Consensus 302 ~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlq-aIali~~l~~~~~----------~~~~LIVvP~-sLl~qW~~ 369 (1019)
..+.|+|+.++.-+.. |++.+.+..||+|||.. -+.++.+++..+. ...+||++|+ .|+.|-..
T Consensus 95 ~~ptpvQk~sip~i~~----Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~n 170 (482)
T KOG0335|consen 95 TKPTPVQKYSIPIISG----GRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYN 170 (482)
T ss_pred cCCCcceeeccceeec----CCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHH
Confidence 4456899999876655 88888999999999987 4455666655432 3478999999 67799999
Q ss_pred HHHHhcCCCc--EEEEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCccc
Q 001731 370 ELTAVGLSAK--IREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLI 447 (1019)
Q Consensus 370 E~~k~~~~~~--v~~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~i 447 (1019)
|..++.-... ....+|. ..-..........++|+++|++.+........ +......++|||||.++
T Consensus 171 ea~k~~~~s~~~~~~~ygg--~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~----------i~l~~~k~~vLDEADrM 238 (482)
T KOG0335|consen 171 EARKFSYLSGMKSVVVYGG--TDLGAQLRFIKRGCDILVATPGRLKDLIERGK----------ISLDNCKFLVLDEADRM 238 (482)
T ss_pred HHHhhcccccceeeeeeCC--cchhhhhhhhccCccEEEecCchhhhhhhcce----------eehhhCcEEEecchHHh
Confidence 9998765443 3333333 22222334456789999999999876554322 12333469999999998
Q ss_pred CCc---chHHhHHhhcC-----CcccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHH
Q 001731 448 KNP---STQRAKSLLEI-----PSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDRE 519 (1019)
Q Consensus 448 KN~---~s~~~kal~~l-----~~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e 519 (1019)
... .-.+.+.+... ....-++.|||=- .+
T Consensus 239 lD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp----~~--------------------------------------- 275 (482)
T KOG0335|consen 239 LDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFP----KE--------------------------------------- 275 (482)
T ss_pred hhhccccccHHHHhcccCCCCccceeEEEEeccCC----hh---------------------------------------
Confidence 541 12223322222 1223355555520 00
Q ss_pred HHhhHHHHHHHHHHhHHHHHH-hhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhHHHhhhcCCChHHH
Q 001731 520 KRIGSAVAKELRERIQPYFLR-RLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAA 598 (1019)
Q Consensus 520 ~~~~~~~~~~L~~~i~p~~lR-R~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~ 598 (1019)
+..++..|+.. .+.-.|... ..........++||.=
T Consensus 276 ----------iq~l~~~fl~~~yi~laV~rv-----g~~~~ni~q~i~~V~~---------------------------- 312 (482)
T KOG0335|consen 276 ----------IQRLAADFLKDNYIFLAVGRV-----GSTSENITQKILFVNE---------------------------- 312 (482)
T ss_pred ----------hhhhHHHHhhccceEEEEeee-----ccccccceeEeeeecc----------------------------
Confidence 11111111100 000000000 0111122223333321
Q ss_pred HHHHHHHhcChhhhhhhhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhcc---
Q 001731 599 LTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIP--- 675 (1019)
Q Consensus 599 l~~Lrkic~hP~ll~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~--- 675 (1019)
..|...|+++|.....
T Consensus 313 -------------------------------------------------------------~~kr~~Lldll~~~~~~~~ 331 (482)
T KOG0335|consen 313 -------------------------------------------------------------MEKRSKLLDLLNKDDGPPS 331 (482)
T ss_pred -------------------------------------------------------------hhhHHHHHHHhhcccCCcc
Confidence 2244444555543331
Q ss_pred ----CCCceeEecccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEE
Q 001731 676 ----EGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRV 751 (1019)
Q Consensus 676 ----~g~KvLIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~V 751 (1019)
..++++||+..+++++.++.+|...++++..|||.-++.+|.+.+..|.++... +|++|.++++|||++.+.+|
T Consensus 332 ~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~p--vlVaT~VaaRGlDi~~V~hV 409 (482)
T KOG0335|consen 332 DGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAP--VLVATNVAARGLDIPNVKHV 409 (482)
T ss_pred cCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcc--eEEEehhhhcCCCCCCCcee
Confidence 125899999999999999999999999999999999999999999999999876 89999999999999999999
Q ss_pred EEcCCCCCchhhhhhhhhhhhhCCCCcEEEE
Q 001731 752 IVVDPAWNPSTDNQSVDRAYRIGQKKDVVVY 782 (1019)
Q Consensus 752 Ii~D~~WNp~~~~QaiGRa~RiGQ~k~V~Vy 782 (1019)
|+||.|-+-..|++|+||++|.|+.--.+.+
T Consensus 410 InyDmP~d~d~YvHRIGRTGR~Gn~G~atsf 440 (482)
T KOG0335|consen 410 INYDMPADIDDYVHRIGRTGRVGNGGRATSF 440 (482)
T ss_pred EEeecCcchhhHHHhccccccCCCCceeEEE
Confidence 9999999999999999999999998765543
No 62
>PRK00254 ski2-like helicase; Provisional
Probab=99.85 E-value=2.4e-19 Score=223.54 Aligned_cols=319 Identities=19% Similarity=0.172 Sum_probs=195.7
Q ss_pred CCCchHHHHHHHH-HHHhhcCCCceEEEcCCCchHHHHH-HHHHHHHhhcCCCCeEEEEeCc-ccHHHHHHHHHHhcC-C
Q 001731 302 NMLFPHQREGLRW-LWSLHCQGKGGILGDDMGLGKTMQI-CGFLAGLFHSRLIKRALVVAPK-TLLSHWIKELTAVGL-S 377 (1019)
Q Consensus 302 ~~L~phQ~egV~~-L~~~~~~~~GgILaDemGLGKTlqa-Iali~~l~~~~~~~~~LIVvP~-sLl~qW~~E~~k~~~-~ 377 (1019)
..|+|+|.+++.- +. .+++.|++.+||+|||+.+ ++++..+... .+++|+|+|. .|+.|+..+|..|.. +
T Consensus 22 ~~l~~~Q~~ai~~~~~----~g~nvlv~apTGsGKT~~~~l~il~~l~~~--~~~~l~l~P~~aLa~q~~~~~~~~~~~g 95 (720)
T PRK00254 22 EELYPPQAEALKSGVL----EGKNLVLAIPTASGKTLVAEIVMVNKLLRE--GGKAVYLVPLKALAEEKYREFKDWEKLG 95 (720)
T ss_pred CCCCHHHHHHHHHHHh----CCCcEEEECCCCcHHHHHHHHHHHHHHHhc--CCeEEEEeChHHHHHHHHHHHHHHhhcC
Confidence 4689999999964 33 4789999999999999987 4444444332 3689999998 677899988887642 4
Q ss_pred CcEEEEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCc--chHHh
Q 001731 378 AKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNP--STQRA 455 (1019)
Q Consensus 378 ~~v~~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~--~s~~~ 455 (1019)
.++..+.|...... .+...++|+|+|++.+........ .+ ...+++||+||+|.+... .....
T Consensus 96 ~~v~~~~Gd~~~~~-----~~~~~~~IiV~Tpe~~~~ll~~~~--~~--------l~~l~lvViDE~H~l~~~~rg~~le 160 (720)
T PRK00254 96 LRVAMTTGDYDSTD-----EWLGKYDIIIATAEKFDSLLRHGS--SW--------IKDVKLVVADEIHLIGSYDRGATLE 160 (720)
T ss_pred CEEEEEeCCCCCch-----hhhccCCEEEEcHHHHHHHHhCCc--hh--------hhcCCEEEEcCcCccCCccchHHHH
Confidence 55555666443221 134568999999998765432110 11 234789999999999643 33344
Q ss_pred HHhhcCC-cccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHHHHh
Q 001731 456 KSLLEIP-SAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERI 534 (1019)
Q Consensus 456 kal~~l~-~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~~L~~~i 534 (1019)
..+..+. ..+.++||||+- +..++...+ ....+.. .+ .|
T Consensus 161 ~il~~l~~~~qiI~lSATl~--n~~~la~wl---~~~~~~~------~~-rp---------------------------- 200 (720)
T PRK00254 161 MILTHMLGRAQILGLSATVG--NAEELAEWL---NAELVVS------DW-RP---------------------------- 200 (720)
T ss_pred HHHHhcCcCCcEEEEEccCC--CHHHHHHHh---CCccccC------CC-CC----------------------------
Confidence 4444443 356688999973 356654332 2111000 00 00
Q ss_pred HHHHHHhhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcChhhhhh
Q 001731 535 QPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLTK 614 (1019)
Q Consensus 535 ~p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~ll~~ 614 (1019)
.|-.. .++..- ..+ ... +.. . + .|
T Consensus 201 -----------------------v~l~~--~~~~~~-----~~~---~~~--------~~~----~---~---~~----- 224 (720)
T PRK00254 201 -----------------------VKLRK--GVFYQG-----FLF---WED--------GKI----E---R---FP----- 224 (720)
T ss_pred -----------------------Cccee--eEecCC-----eee---ccC--------cch----h---c---ch-----
Confidence 00000 000000 000 000 000 0 0 00
Q ss_pred hhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhccCCCceeEecccHHHHHHHH
Q 001731 615 RAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQ 694 (1019)
Q Consensus 615 ~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~ 694 (1019)
......+.+.+ ..+.++||||.++.....++
T Consensus 225 ---------------------------------------------~~~~~~~~~~i----~~~~~vLVF~~sr~~~~~~a 255 (720)
T PRK00254 225 ---------------------------------------------NSWESLVYDAV----KKGKGALVFVNTRRSAEKEA 255 (720)
T ss_pred ---------------------------------------------HHHHHHHHHHH----HhCCCEEEEEcChHHHHHHH
Confidence 00011112222 24778999999987665544
Q ss_pred HHHhh---------------------------------cCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCccc
Q 001731 695 ESIGS---------------------------------KGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGL 741 (1019)
Q Consensus 695 ~~L~~---------------------------------~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~ 741 (1019)
..|.. ....+..+||+++..+|..+.+.|++|... +|++|.+.+.
T Consensus 256 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~--VLvaT~tLa~ 333 (720)
T PRK00254 256 LELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIK--VITATPTLSA 333 (720)
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCe--EEEeCcHHhh
Confidence 33321 123588999999999999999999998755 8899999999
Q ss_pred ccCcccCCEEEE-------cCCCC-CchhhhhhhhhhhhhCCCCcEEEEEEeeCC
Q 001731 742 GLTLTKADRVIV-------VDPAW-NPSTDNQSVDRAYRIGQKKDVVVYRLMTCG 788 (1019)
Q Consensus 742 GLNLt~A~~VIi-------~D~~W-Np~~~~QaiGRa~RiGQ~k~V~VyrLit~g 788 (1019)
|+|+++.+.||. ++.++ ....+.|++|||+|.|....-.++.++...
T Consensus 334 Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~ 388 (720)
T PRK00254 334 GINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTE 388 (720)
T ss_pred hcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCc
Confidence 999998877774 33333 345789999999999876655566555543
No 63
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.85 E-value=2.2e-19 Score=206.50 Aligned_cols=121 Identities=19% Similarity=0.268 Sum_probs=95.7
Q ss_pred hHHHHHHHHHhhccCCCceeEecccHHHHHHHHHHHhhcCC--eEEEEECCCCHHHHHHH----HHhhhcCCCccEEEEe
Q 001731 662 KISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGY--KFLRIDGTTKASDRVKI----VNDFQEGDVAPIFLLT 735 (1019)
Q Consensus 662 Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~~~L~~~gi--~~~ridG~~s~~eR~~i----i~~F~~~~~~~V~LlS 735 (1019)
|...+..++..+ ..+.++||||+.+..++.+...|...+. .+..+||+++..+|.+. ++.|.++... +|++
T Consensus 208 ~~~~l~~l~~~~-~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~--ilva 284 (358)
T TIGR01587 208 EISSLERLLEFI-KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKF--VIVA 284 (358)
T ss_pred CHHHHHHHHHHh-hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCe--EEEE
Confidence 333444444332 3578999999999999999999988766 59999999999999764 8899987644 8999
Q ss_pred cCCcccccCcccCCEEEEcCCCCCchhhhhhhhhhhhhCCCC----cEEEEEEeeCC
Q 001731 736 SQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKK----DVVVYRLMTCG 788 (1019)
Q Consensus 736 T~agg~GLNLt~A~~VIi~D~~WNp~~~~QaiGRa~RiGQ~k----~V~VyrLit~g 788 (1019)
|++.++|+|+. ++.||+++.| +..+.||+||++|.|... .|+||.....+
T Consensus 285 T~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~ 338 (358)
T TIGR01587 285 TQVIEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEG 338 (358)
T ss_pred CcchhceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCCC
Confidence 99999999994 8999988765 789999999999999764 35555544443
No 64
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.84 E-value=3.1e-20 Score=207.17 Aligned_cols=312 Identities=19% Similarity=0.233 Sum_probs=206.9
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHH-HHHHHhh----cCCCCeEEEEeCcccH-HHHHHH---HHH
Q 001731 303 MLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICG-FLAGLFH----SRLIKRALVVAPKTLL-SHWIKE---LTA 373 (1019)
Q Consensus 303 ~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIa-li~~l~~----~~~~~~~LIVvP~sLl-~qW~~E---~~k 373 (1019)
++.+.|...+.-++. ++..+.+.-||+|||+.-+. .+..++. .+..-.+|||||+.-+ .|-..| +.+
T Consensus 104 ~MT~VQ~~ti~pll~----gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~ 179 (543)
T KOG0342|consen 104 TMTPVQQKTIPPLLE----GKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLK 179 (543)
T ss_pred chhHHHHhhcCccCC----CccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHh
Confidence 467788877765555 77888999999999987332 2233322 2222378999999544 565554 445
Q ss_pred hcCCCcEEEEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcch-
Q 001731 374 VGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPST- 452 (1019)
Q Consensus 374 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s- 452 (1019)
+.++..+....|..... .+..+..+.+.++|.|++.+..+...-.... -...+++|+|||.+|...+.
T Consensus 180 ~h~~~~v~~viGG~~~~--~e~~kl~k~~niliATPGRLlDHlqNt~~f~---------~r~~k~lvlDEADrlLd~GF~ 248 (543)
T KOG0342|consen 180 YHESITVGIVIGGNNFS--VEADKLVKGCNILIATPGRLLDHLQNTSGFL---------FRNLKCLVLDEADRLLDIGFE 248 (543)
T ss_pred hCCCcceEEEeCCccch--HHHHHhhccccEEEeCCchHHhHhhcCCcch---------hhccceeEeecchhhhhcccH
Confidence 66566666555544332 2334445578999999999987766443311 22237899999999965432
Q ss_pred -HHhHHhhcCCc-ccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHH
Q 001731 453 -QRAKSLLEIPS-AHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKEL 530 (1019)
Q Consensus 453 -~~~kal~~l~~-~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~~L 530 (1019)
.+-+.+..++. ...++.|||-- -.+.++..
T Consensus 249 ~di~~Ii~~lpk~rqt~LFSAT~~-~kV~~l~~----------------------------------------------- 280 (543)
T KOG0342|consen 249 EDVEQIIKILPKQRQTLLFSATQP-SKVKDLAR----------------------------------------------- 280 (543)
T ss_pred HHHHHHHHhccccceeeEeeCCCc-HHHHHHHH-----------------------------------------------
Confidence 23444444443 33477777741 11111110
Q ss_pred HHHhHHHHHHh--hhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcC
Q 001731 531 RERIQPYFLRR--LKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDH 608 (1019)
Q Consensus 531 ~~~i~p~~lRR--~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~h 608 (1019)
..+.| ..-++.+.... .....+.|-
T Consensus 281 ------~~L~~d~~~v~~~d~~~~--------------------------------------------~The~l~Qg--- 307 (543)
T KOG0342|consen 281 ------GALKRDPVFVNVDDGGER--------------------------------------------ETHERLEQG--- 307 (543)
T ss_pred ------HhhcCCceEeecCCCCCc--------------------------------------------chhhcccce---
Confidence 01111 00000000000 000000000
Q ss_pred hhhhhhhhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhccCCCceeEecccHH
Q 001731 609 PLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRK 688 (1019)
Q Consensus 609 P~ll~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~ 688 (1019)
........++..+..+|++.... .|+|||+.+-.
T Consensus 308 ---------------------------------------------yvv~~~~~~f~ll~~~LKk~~~~-~KiiVF~sT~~ 341 (543)
T KOG0342|consen 308 ---------------------------------------------YVVAPSDSRFSLLYTFLKKNIKR-YKIIVFFSTCM 341 (543)
T ss_pred ---------------------------------------------EEeccccchHHHHHHHHHHhcCC-ceEEEEechhh
Confidence 00001223467777888776544 89999999999
Q ss_pred HHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCCCCCchhhhhhhh
Q 001731 689 MLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVD 768 (1019)
Q Consensus 689 ~ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QaiG 768 (1019)
+...+...|+...+++.-|||+.++..|..+..+|...+.. +|++|+++++|+|++.++-||.||||-+|..|++|+|
T Consensus 342 ~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesg--IL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvG 419 (543)
T KOG0342|consen 342 SVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESG--ILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVG 419 (543)
T ss_pred HHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccc--eEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhc
Confidence 99999999999999999999999999999999999988866 9999999999999999999999999999999999999
Q ss_pred hhhhhCCCCc
Q 001731 769 RAYRIGQKKD 778 (1019)
Q Consensus 769 Ra~RiGQ~k~ 778 (1019)
|++|-|-+-.
T Consensus 420 RTaR~gk~G~ 429 (543)
T KOG0342|consen 420 RTAREGKEGK 429 (543)
T ss_pred cccccCCCce
Confidence 9999776554
No 65
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.84 E-value=1.5e-19 Score=202.35 Aligned_cols=125 Identities=22% Similarity=0.393 Sum_probs=98.0
Q ss_pred HHHHHHHHHhhcc--CCCceeEecccHHHHHHHHHHHh----h------------------cCCeEEEEECCCCHHHHHH
Q 001731 663 ISFILSLLDKLIP--EGHNVLIFSQTRKMLNLIQESIG----S------------------KGYKFLRIDGTTKASDRVK 718 (1019)
Q Consensus 663 l~~L~~LL~~~~~--~g~KvLIFsq~~~~ldiL~~~L~----~------------------~gi~~~ridG~~s~~eR~~ 718 (1019)
+..|..+|.+... ...|+|||-...++.+.=...|. . .+.++.++||+|++.+|..
T Consensus 409 LV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts 488 (708)
T KOG0348|consen 409 LVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTS 488 (708)
T ss_pred HHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHH
Confidence 4445555554432 45688999888777654444332 2 1457999999999999999
Q ss_pred HHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCCCCCchhhhhhhhhhhhhCCCCcEEEEEEeeCCCHH
Q 001731 719 IVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVE 791 (1019)
Q Consensus 719 ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QaiGRa~RiGQ~k~V~VyrLit~gTiE 791 (1019)
+...|...... +|++|+++++||||+.+..||-||||.+++.|++|+||+.|+|-+-.... ++.+...|
T Consensus 489 ~f~~Fs~~~~~--VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alL--fL~P~Eae 557 (708)
T KOG0348|consen 489 VFQEFSHSRRA--VLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALL--FLLPSEAE 557 (708)
T ss_pred HHHhhccccce--EEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEE--EecccHHH
Confidence 99999988755 99999999999999999999999999999999999999999998876543 34444333
No 66
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.83 E-value=2.3e-19 Score=201.34 Aligned_cols=331 Identities=19% Similarity=0.263 Sum_probs=224.5
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHH-HHHHHHHHhhcCC---CC-eEEEEeCcc-cHHHHHHHHHHhcC
Q 001731 303 MLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQ-ICGFLAGLFHSRL---IK-RALVVAPKT-LLSHWIKELTAVGL 376 (1019)
Q Consensus 303 ~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlq-aIali~~l~~~~~---~~-~~LIVvP~s-Ll~qW~~E~~k~~~ 376 (1019)
.+...|+..|...+. |+..|-|.-||+|||+. .+.++..+++.+. .+ .+|||.|+. |..|-..-+.+.+.
T Consensus 91 ~~teiQ~~~Ip~aL~----G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk 166 (758)
T KOG0343|consen 91 KMTEIQRDTIPMALQ----GHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGK 166 (758)
T ss_pred cHHHHHHhhcchhcc----CcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhh
Confidence 456789888877666 77777778999999998 5566666665432 12 689999995 55677666766433
Q ss_pred CC--cEEEEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcchH-
Q 001731 377 SA--KIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQ- 453 (1019)
Q Consensus 377 ~~--~v~~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s~- 453 (1019)
.. ....+.|... -.++.. ......|+|+|++.+..+..... .+......++|||||.++.....+
T Consensus 167 ~h~fSaGLiiGG~~--~k~E~e-Ri~~mNILVCTPGRLLQHmde~~---------~f~t~~lQmLvLDEADR~LDMGFk~ 234 (758)
T KOG0343|consen 167 HHDFSAGLIIGGKD--VKFELE-RISQMNILVCTPGRLLQHMDENP---------NFSTSNLQMLVLDEADRMLDMGFKK 234 (758)
T ss_pred ccccccceeecCch--hHHHHH-hhhcCCeEEechHHHHHHhhhcC---------CCCCCcceEEEeccHHHHHHHhHHH
Confidence 21 1112223322 222222 24578999999999988776433 234566789999999999664432
Q ss_pred -HhHHhhcCCc-ccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHH
Q 001731 454 -RAKSLLEIPS-AHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELR 531 (1019)
Q Consensus 454 -~~kal~~l~~-~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~~L~ 531 (1019)
....+..|+. +..++.|||+. ++..+|..| .+-+|.+
T Consensus 235 tL~~Ii~~lP~~RQTLLFSATqt-~svkdLaRL-sL~dP~~--------------------------------------- 273 (758)
T KOG0343|consen 235 TLNAIIENLPKKRQTLLFSATQT-KSVKDLARL-SLKDPVY--------------------------------------- 273 (758)
T ss_pred HHHHHHHhCChhheeeeeecccc-hhHHHHHHh-hcCCCcE---------------------------------------
Confidence 3334455654 45699999995 455555333 1111111
Q ss_pred HHhHHHHHHhhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcChhh
Q 001731 532 ERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLL 611 (1019)
Q Consensus 532 ~~i~p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~l 611 (1019)
|++.-+. ....|..
T Consensus 274 ----------------------------------vsvhe~a--------------------------------~~atP~~ 287 (758)
T KOG0343|consen 274 ----------------------------------VSVHENA--------------------------------VAATPSN 287 (758)
T ss_pred ----------------------------------EEEeccc--------------------------------cccChhh
Confidence 1111000 0000000
Q ss_pred hhhhhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhccCCCceeEecccHHHHH
Q 001731 612 LTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLN 691 (1019)
Q Consensus 612 l~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ld 691 (1019)
+... ......--|+.+|...|..+ ...|.|||..+-+...
T Consensus 288 L~Q~--------------------------------------y~~v~l~~Ki~~L~sFI~sh--lk~K~iVF~SscKqvk 327 (758)
T KOG0343|consen 288 LQQS--------------------------------------YVIVPLEDKIDMLWSFIKSH--LKKKSIVFLSSCKQVK 327 (758)
T ss_pred hhhe--------------------------------------EEEEehhhHHHHHHHHHHhc--cccceEEEEehhhHHH
Confidence 0000 00001233888888888877 4568999999988888
Q ss_pred HHHHHHhhc--CCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCCCCCchhhhhhhhh
Q 001731 692 LIQESIGSK--GYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDR 769 (1019)
Q Consensus 692 iL~~~L~~~--gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QaiGR 769 (1019)
.+...+.+. |++...++|+|++..|..+..+|.... .++|.+|+++++||+++.++-||.||.|-+..+|++|+||
T Consensus 328 f~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~--~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGR 405 (758)
T KOG0343|consen 328 FLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKR--AVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGR 405 (758)
T ss_pred HHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhc--ceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhh
Confidence 888888764 999999999999999999999999865 4599999999999999999999999999999999999999
Q ss_pred hhhhCCCCcEEEEEEeeCCCHHHHHHHHHHHH
Q 001731 770 AYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 801 (1019)
Q Consensus 770 a~RiGQ~k~V~VyrLit~gTiEEkI~~rq~~K 801 (1019)
+.|.+..-+..+|- ..+-+|.+..+...|
T Consensus 406 tAR~~~~G~sll~L---~psEeE~~l~~Lq~k 434 (758)
T KOG0343|consen 406 TARYKERGESLLML---TPSEEEAMLKKLQKK 434 (758)
T ss_pred hhcccCCCceEEEE---cchhHHHHHHHHHHc
Confidence 99998877765432 234557777666655
No 67
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.82 E-value=4.1e-19 Score=190.84 Aligned_cols=318 Identities=20% Similarity=0.274 Sum_probs=221.0
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHH-HHHHHHHHhhcCCCCeEEEEeCcc-cHHHHHHHHHHhc--CCC
Q 001731 303 MLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQ-ICGFLAGLFHSRLIKRALVVAPKT-LLSHWIKELTAVG--LSA 378 (1019)
Q Consensus 303 ~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlq-aIali~~l~~~~~~~~~LIVvP~s-Ll~qW~~E~~k~~--~~~ 378 (1019)
+..|.|..+|..+++ |+.||=+.-||+|||.. ++.++..+...+..--.||++|+. +..|-.++|...+ .+.
T Consensus 29 ~pTpiQ~~cIpkILe----Grdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~l 104 (442)
T KOG0340|consen 29 KPTPIQQACIPKILE----GRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLNL 104 (442)
T ss_pred CCCchHhhhhHHHhc----ccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHHhcccccc
Confidence 356899999999988 99999999999999986 566666665555555789999995 4467777776654 345
Q ss_pred cEEEEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcchH-HhHH
Q 001731 379 KIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQ-RAKS 457 (1019)
Q Consensus 379 ~v~~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s~-~~ka 457 (1019)
++.+++|......+ ........+||++|++.+..+....... .........++|+|||.++.+..-. ....
T Consensus 105 K~~vivGG~d~i~q--a~~L~~rPHvVvatPGRlad~l~sn~~~------~~~~~~rlkflVlDEADrvL~~~f~d~L~~ 176 (442)
T KOG0340|consen 105 KVSVIVGGTDMIMQ--AAILSDRPHVVVATPGRLADHLSSNLGV------CSWIFQRLKFLVLDEADRVLAGCFPDILEG 176 (442)
T ss_pred eEEEEEccHHHhhh--hhhcccCCCeEecCccccccccccCCcc------chhhhhceeeEEecchhhhhccchhhHHhh
Confidence 66666666544332 2234457899999999987665433111 1112334579999999999775322 2222
Q ss_pred h-hcCCcc-cEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHHHHhH
Q 001731 458 L-LEIPSA-HRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQ 535 (1019)
Q Consensus 458 l-~~l~~~-~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~~L~~~i~ 535 (1019)
+ ..++.+ .-+++|||-- +++.++ +..|+..+....
T Consensus 177 i~e~lP~~RQtLlfSATit-d~i~ql---------------------~~~~i~k~~a~~--------------------- 213 (442)
T KOG0340|consen 177 IEECLPKPRQTLLFSATIT-DTIKQL---------------------FGCPITKSIAFE--------------------- 213 (442)
T ss_pred hhccCCCccceEEEEeehh-hHHHHh---------------------hcCCcccccceE---------------------
Confidence 2 234444 5699999952 222222 111111110000
Q ss_pred HHHHHhhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcChhhhhhh
Q 001731 536 PYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLTKR 615 (1019)
Q Consensus 536 p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~ll~~~ 615 (1019)
+ ++ .+-.+.-..+|..++.
T Consensus 214 ---~-----e~---------------------~~~vstvetL~q~yI~-------------------------------- 232 (442)
T KOG0340|consen 214 ---L-----EV---------------------IDGVSTVETLYQGYIL-------------------------------- 232 (442)
T ss_pred ---E-----ec---------------------cCCCCchhhhhhheee--------------------------------
Confidence 0 00 0000111112222211
Q ss_pred hhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhcc-CCCceeEecccHHHHHHHH
Q 001731 616 AAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIP-EGHNVLIFSQTRKMLNLIQ 694 (1019)
Q Consensus 616 ~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~-~g~KvLIFsq~~~~ldiL~ 694 (1019)
.....|-.+|..+|..... +...++||++.+...++|.
T Consensus 233 -----------------------------------------~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~ 271 (442)
T KOG0340|consen 233 -----------------------------------------VSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLS 271 (442)
T ss_pred -----------------------------------------cchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHH
Confidence 0123466667777777765 5678999999999999999
Q ss_pred HHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCCCCCchhhhhhhhhhhhhC
Q 001731 695 ESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIG 774 (1019)
Q Consensus 695 ~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QaiGRa~RiG 774 (1019)
..|...++.+..+|+-|++++|...+.+|+++.-. +|++|+++++|||++.+.-||+||.|-.|..|++|+||..|.|
T Consensus 272 ~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~--iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAG 349 (442)
T KOG0340|consen 272 MTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAAR--ILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAG 349 (442)
T ss_pred HHHhhhceeeeehhhcchHHHHHHHHHHHhhcCcc--EEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhccc
Confidence 99999999999999999999999999999998755 8899999999999999999999999999999999999999999
Q ss_pred CCCcE
Q 001731 775 QKKDV 779 (1019)
Q Consensus 775 Q~k~V 779 (1019)
..-..
T Consensus 350 R~G~a 354 (442)
T KOG0340|consen 350 RKGMA 354 (442)
T ss_pred CCcce
Confidence 87653
No 68
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.82 E-value=2.2e-18 Score=210.28 Aligned_cols=99 Identities=20% Similarity=0.437 Sum_probs=85.9
Q ss_pred CCCceeEecccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHH-----HHHHhhhc----CC-----CccEEEEecCCccc
Q 001731 676 EGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRV-----KIVNDFQE----GD-----VAPIFLLTSQVGGL 741 (1019)
Q Consensus 676 ~g~KvLIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eR~-----~ii~~F~~----~~-----~~~V~LlST~agg~ 741 (1019)
.+.++||||+++..++.|...|...++ ..+||.+++.+|. +++++|.. +. ....+||+|+++++
T Consensus 271 ~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaer 348 (844)
T TIGR02621 271 SGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEV 348 (844)
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhh
Confidence 567899999999999999999998887 8999999999999 78899986 32 11468999999999
Q ss_pred ccCcccCCEEEEcCCCCCchhhhhhhhhhhhhCCCCcE
Q 001731 742 GLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDV 779 (1019)
Q Consensus 742 GLNLt~A~~VIi~D~~WNp~~~~QaiGRa~RiGQ~k~V 779 (1019)
|||+.. ++||++..|+ ..|+||+||++|.|.....
T Consensus 349 GLDId~-d~VI~d~aP~--esyIQRiGRtgR~G~~~~~ 383 (844)
T TIGR02621 349 GVNISA-DHLVCDLAPF--ESMQQRFGRVNRFGELQAC 383 (844)
T ss_pred cccCCc-ceEEECCCCH--HHHHHHhcccCCCCCCCCc
Confidence 999986 9999988775 7899999999999986544
No 69
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.81 E-value=6.3e-18 Score=207.86 Aligned_cols=159 Identities=21% Similarity=0.214 Sum_probs=109.2
Q ss_pred CCCchHHHHHHHHHHHhhcC------CCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCc-ccHHHHHHHHHHh
Q 001731 302 NMLFPHQREGLRWLWSLHCQ------GKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK-TLLSHWIKELTAV 374 (1019)
Q Consensus 302 ~~L~phQ~egV~~L~~~~~~------~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~-sLl~qW~~E~~k~ 374 (1019)
.-.++||..+|+.+...... .++|++.+++|+|||++++.++..+.......++|||||. .|..||.++|..+
T Consensus 237 ~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~ 316 (667)
T TIGR00348 237 PYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSL 316 (667)
T ss_pred eehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhh
Confidence 34789999999998876543 3689999999999999999888887766666799999998 6789999999998
Q ss_pred cCCCcEEEEcccccchhhHHHHHhh--hCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcch
Q 001731 375 GLSAKIREYFGTCVKTRQYELQYVL--QDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPST 452 (1019)
Q Consensus 375 ~~~~~v~~~~g~~~~~~~~~~~~~~--~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s 452 (1019)
.+...... +. ...+...+ ...+|+|+|.+.+......... .+ .......+||+||||+.- ..
T Consensus 317 ~~~~~~~~--~s-----~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~-~~------~~~~~~~lvIvDEaHrs~--~~ 380 (667)
T TIGR00348 317 QKDCAERI--ES-----IAELKRLLEKDDGGIIITTIQKFDKKLKEEEE-KF------PVDRKEVVVIFDEAHRSQ--YG 380 (667)
T ss_pred CCCCCccc--CC-----HHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhh-cc------CCCCCCEEEEEEcCcccc--ch
Confidence 75321110 10 11121222 2468999999999753221100 00 001112489999999863 23
Q ss_pred HHhHHh-hcCCcccEEEeecCCCCC
Q 001731 453 QRAKSL-LEIPSAHRIIISGTPIQN 476 (1019)
Q Consensus 453 ~~~kal-~~l~~~~RllLTGTPiqN 476 (1019)
.....+ ..++..++++|||||+..
T Consensus 381 ~~~~~l~~~~p~a~~lGfTaTP~~~ 405 (667)
T TIGR00348 381 ELAKNLKKALKNASFFGFTGTPIFK 405 (667)
T ss_pred HHHHHHHhhCCCCcEEEEeCCCccc
Confidence 344445 357788999999999853
No 70
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.81 E-value=2.8e-18 Score=190.34 Aligned_cols=312 Identities=18% Similarity=0.200 Sum_probs=209.3
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHh-hc---CCCC--eEEEEeCcccH-HH---HHHHHH
Q 001731 303 MLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLF-HS---RLIK--RALVVAPKTLL-SH---WIKELT 372 (1019)
Q Consensus 303 ~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~-~~---~~~~--~~LIVvP~sLl-~q---W~~E~~ 372 (1019)
...|.|..++..+.. ++...+-..||+|||+.-+.-+.... +. .+.+ ..|||+|+.-+ .| ....|.
T Consensus 28 ~mTpVQa~tIPlll~----~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~ 103 (567)
T KOG0345|consen 28 KMTPVQAATIPLLLK----NKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFL 103 (567)
T ss_pred ccCHHHHhhhHHHhc----CCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHHH
Confidence 467999999988877 77777778999999998554444333 22 1222 57999998544 33 344555
Q ss_pred HhcCCCcEEEEcccccchhhHHHHHh-hhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcc
Q 001731 373 AVGLSAKIREYFGTCVKTRQYELQYV-LQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPS 451 (1019)
Q Consensus 373 k~~~~~~v~~~~g~~~~~~~~~~~~~-~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~ 451 (1019)
.+.++.....+.|+..-.. ..... .....|+|.|++.+......-. ..+.-....++|+|||.++...+
T Consensus 104 ~~l~~l~~~l~vGG~~v~~--Di~~fkee~~nIlVgTPGRL~di~~~~~--------~~l~~rsLe~LVLDEADrLldmg 173 (567)
T KOG0345|consen 104 EHLPNLNCELLVGGRSVEE--DIKTFKEEGPNILVGTPGRLLDILQREA--------EKLSFRSLEILVLDEADRLLDMG 173 (567)
T ss_pred HhhhccceEEEecCccHHH--HHHHHHHhCCcEEEeCchhHHHHHhchh--------hhccccccceEEecchHhHhccc
Confidence 5667777777777633222 22222 3456799999998865544311 11123346899999999997655
Q ss_pred h--HHhHHhhcCCcccEEE-eecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHH
Q 001731 452 T--QRAKSLLEIPSAHRII-ISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAK 528 (1019)
Q Consensus 452 s--~~~kal~~l~~~~Rll-LTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~ 528 (1019)
. .+...+..|+..+|-+ .|||-.+. ..+ |+.
T Consensus 174 Fe~~~n~ILs~LPKQRRTGLFSATq~~~-v~d---L~r------------------------------------------ 207 (567)
T KOG0345|consen 174 FEASVNTILSFLPKQRRTGLFSATQTQE-VED---LAR------------------------------------------ 207 (567)
T ss_pred HHHHHHHHHHhcccccccccccchhhHH-HHH---HHH------------------------------------------
Confidence 3 4556677778777755 57775321 111 111
Q ss_pred HHHHHhHHHHHHhhhhcccccCccccccccCccceEEEEEcC-----CHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHH
Q 001731 529 ELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRL-----TSCQRQLYEAFLNSEIVLSAFDGSPLAALTILK 603 (1019)
Q Consensus 529 ~L~~~i~p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~l-----s~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lr 603 (1019)
.-||-... |.+.. +|....+|
T Consensus 208 --------aGLRNpv~---------------------V~V~~k~~~~tPS~L~~~------------------------- 233 (567)
T KOG0345|consen 208 --------AGLRNPVR---------------------VSVKEKSKSATPSSLALE------------------------- 233 (567)
T ss_pred --------hhccCcee---------------------eeecccccccCchhhcce-------------------------
Confidence 00100000 00000 01000000
Q ss_pred HHhcChhhhhhhhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhccCCCceeEe
Q 001731 604 KICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIF 683 (1019)
Q Consensus 604 kic~hP~ll~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIF 683 (1019)
.......-|+..|+++|... ..+|+|||
T Consensus 234 --------------------------------------------------Y~v~~a~eK~~~lv~~L~~~--~~kK~iVF 261 (567)
T KOG0345|consen 234 --------------------------------------------------YLVCEADEKLSQLVHLLNNN--KDKKCIVF 261 (567)
T ss_pred --------------------------------------------------eeEecHHHHHHHHHHHHhcc--ccccEEEE
Confidence 00011234888888888773 56789999
Q ss_pred cccHHHHHHHHHHHhhc--CCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCCCCCch
Q 001731 684 SQTRKMLNLIQESIGSK--GYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPS 761 (1019)
Q Consensus 684 sq~~~~ldiL~~~L~~~--gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~ 761 (1019)
-.+-...++....|... +..++-+||.|+..+|.++++.|....+. +|++|+++++|||+++++.||.||||-+|.
T Consensus 262 F~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~--vl~~TDVaARGlDip~iD~VvQ~DpP~~~~ 339 (567)
T KOG0345|consen 262 FPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNG--VLFCTDVAARGLDIPGIDLVVQFDPPKDPS 339 (567)
T ss_pred ecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCc--eEEeehhhhccCCCCCceEEEecCCCCChh
Confidence 88777777777777654 67899999999999999999999986555 888999999999999999999999999999
Q ss_pred hhhhhhhhhhhhCCCCcEEEE
Q 001731 762 TDNQSVDRAYRIGQKKDVVVY 782 (1019)
Q Consensus 762 ~~~QaiGRa~RiGQ~k~V~Vy 782 (1019)
.+.+|.||++|.|..-...|+
T Consensus 340 ~FvHR~GRTaR~gr~G~Aivf 360 (567)
T KOG0345|consen 340 SFVHRCGRTARAGREGNAIVF 360 (567)
T ss_pred HHHhhcchhhhccCccceEEE
Confidence 999999999999988776554
No 71
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.80 E-value=3.8e-20 Score=207.64 Aligned_cols=98 Identities=14% Similarity=0.225 Sum_probs=93.1
Q ss_pred CCceeEecccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCC
Q 001731 677 GHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDP 756 (1019)
Q Consensus 677 g~KvLIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~ 756 (1019)
..|+||||+++..+..|..+|+..++....+|..|.+++|.+-+++|.+.++. +|++|+++++||+++++.|||+|..
T Consensus 463 PGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~--VLiaTDVAARGLDIp~V~HVIHYqV 540 (731)
T KOG0347|consen 463 PGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSG--VLIATDVAARGLDIPGVQHVIHYQV 540 (731)
T ss_pred CCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCe--EEEeehhhhccCCCCCcceEEEeec
Confidence 45799999999999999999999999999999999999999999999998765 9999999999999999999999999
Q ss_pred CCCchhhhhhhhhhhhhCCC
Q 001731 757 AWNPSTDNQSVDRAYRIGQK 776 (1019)
Q Consensus 757 ~WNp~~~~QaiGRa~RiGQ~ 776 (1019)
|-....|++|-||+.|.+..
T Consensus 541 PrtseiYVHRSGRTARA~~~ 560 (731)
T KOG0347|consen 541 PRTSEIYVHRSGRTARANSE 560 (731)
T ss_pred CCccceeEecccccccccCC
Confidence 99999999999999998754
No 72
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.80 E-value=5.9e-19 Score=218.16 Aligned_cols=318 Identities=17% Similarity=0.150 Sum_probs=221.1
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCc-ccHHHHHHHHHHhcCCCcE
Q 001731 302 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK-TLLSHWIKELTAVGLSAKI 380 (1019)
Q Consensus 302 ~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~-sLl~qW~~E~~k~~~~~~v 380 (1019)
..+||-|+++|.-.+. |+.+++-++||.||++. +.+...-..+-+|||.|. +|+......+.+.+.....
T Consensus 263 ~~FR~~Q~eaI~~~l~----Gkd~fvlmpTG~GKSLC-----YQlPA~l~~gitvVISPL~SLm~DQv~~L~~~~I~a~~ 333 (941)
T KOG0351|consen 263 KGFRPNQLEAINATLS----GKDCFVLMPTGGGKSLC-----YQLPALLLGGVTVVISPLISLMQDQVTHLSKKGIPACF 333 (941)
T ss_pred ccCChhHHHHHHHHHc----CCceEEEeecCCceeeE-----eeccccccCCceEEeccHHHHHHHHHHhhhhcCcceee
Confidence 4689999999985555 89999999999999963 333322234578999998 8988777777544333222
Q ss_pred EEEcccccc-hhhHHHHHhhh---CCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcchH---
Q 001731 381 REYFGTCVK-TRQYELQYVLQ---DKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQ--- 453 (1019)
Q Consensus 381 ~~~~g~~~~-~~~~~~~~~~~---~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s~--- 453 (1019)
..+.... .+....+.+.. .++|+..|++.+............+ .......++|+||||++..+...
T Consensus 334 --L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L-----~~~~~lal~vIDEAHCVSqWgHdFRp 406 (941)
T KOG0351|consen 334 --LSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADL-----YARGLLALFVIDEAHCVSQWGHDFRP 406 (941)
T ss_pred --ccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhc-----cCCCeeEEEEecHHHHhhhhcccccH
Confidence 2222221 22222333322 4689999999997665443222111 11223689999999999776533
Q ss_pred ----HhHHhhcCCcccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHH
Q 001731 454 ----RAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKE 529 (1019)
Q Consensus 454 ----~~kal~~l~~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~~ 529 (1019)
......+++....|+||||....--.|+...|++-+|..+.+ .|..
T Consensus 407 ~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~------sfnR------------------------ 456 (941)
T KOG0351|consen 407 SYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKS------SFNR------------------------ 456 (941)
T ss_pred HHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecc------cCCC------------------------
Confidence 233333445667799999998888899988888777753322 1211
Q ss_pred HHHHhHHHHHHhhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcCh
Q 001731 530 LRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHP 609 (1019)
Q Consensus 530 L~~~i~p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP 609 (1019)
+...+-|.-+.+ ..
T Consensus 457 ------------------------------~NL~yeV~~k~~--~~---------------------------------- 470 (941)
T KOG0351|consen 457 ------------------------------PNLKYEVSPKTD--KD---------------------------------- 470 (941)
T ss_pred ------------------------------CCceEEEEeccC--cc----------------------------------
Confidence 111111111111 00
Q ss_pred hhhhhhhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhccCCCceeEecccHHH
Q 001731 610 LLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKM 689 (1019)
Q Consensus 610 ~ll~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ 689 (1019)
....+...+. ...++...||||.++.+
T Consensus 471 ----------------------------------------------------~~~~~~~~~~-~~~~~~s~IIYC~sr~~ 497 (941)
T KOG0351|consen 471 ----------------------------------------------------ALLDILEESK-LRHPDQSGIIYCLSRKE 497 (941)
T ss_pred ----------------------------------------------------chHHHHHHhh-hcCCCCCeEEEeCCcch
Confidence 0000011111 12256779999999999
Q ss_pred HHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCCCCCchhhhhhhhh
Q 001731 690 LNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDR 769 (1019)
Q Consensus 690 ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QaiGR 769 (1019)
++.+...|...|++...||++++..+|+.+...|..+... ++++|-|.|+|||..++..||+|..|-+...|.|..||
T Consensus 498 ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~--VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GR 575 (941)
T KOG0351|consen 498 CEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIR--VIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGR 575 (941)
T ss_pred HHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCe--EEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccc
Confidence 9999999999999999999999999999999999999844 88899999999999999999999999999999999999
Q ss_pred hhhhCCCCcEEEEEEee
Q 001731 770 AYRIGQKKDVVVYRLMT 786 (1019)
Q Consensus 770 a~RiGQ~k~V~VyrLit 786 (1019)
|+|.|+...|+.|+=..
T Consensus 576 AGRDG~~s~C~l~y~~~ 592 (941)
T KOG0351|consen 576 AGRDGLPSSCVLLYGYA 592 (941)
T ss_pred cCcCCCcceeEEecchh
Confidence 99999999988665433
No 73
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.80 E-value=2.1e-17 Score=197.89 Aligned_cols=130 Identities=12% Similarity=0.192 Sum_probs=107.4
Q ss_pred hhhhHHHHHHHHHhhccCCCceeEecccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCC
Q 001731 659 ISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQV 738 (1019)
Q Consensus 659 ~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~a 738 (1019)
...|+.+|.+++..+...+..+||||.+....+.|...|...|+++..++|.+. +|++.+..|...... ++|+|.+
T Consensus 455 ~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~--VlVATdm 530 (656)
T PRK12898 455 AAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGR--ITVATNM 530 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCc--EEEEccc
Confidence 356999999999887777888999999999999999999999999999999865 566666666654433 8899999
Q ss_pred cccccCcc---cCC-----EEEEcCCCCCchhhhhhhhhhhhhCCCCcEEEEEEeeCCCHHHHHHHH
Q 001731 739 GGLGLTLT---KAD-----RVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRK 797 (1019)
Q Consensus 739 gg~GLNLt---~A~-----~VIi~D~~WNp~~~~QaiGRa~RiGQ~k~V~VyrLit~gTiEEkI~~r 797 (1019)
+|+|+|+. .+. +||+||.|-|+..|.|++||++|.|..-.+.. |+ |.|+.++.+
T Consensus 531 AgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~--~i---s~eD~l~~~ 592 (656)
T PRK12898 531 AGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEA--IL---SLEDDLLQS 592 (656)
T ss_pred hhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEE--Ee---chhHHHHHh
Confidence 99999998 444 99999999999999999999999998654432 33 346666654
No 74
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.79 E-value=1.3e-17 Score=203.48 Aligned_cols=130 Identities=15% Similarity=0.209 Sum_probs=111.5
Q ss_pred hhhhHHHHHHHHHhhccCCCceeEecccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCC
Q 001731 659 ISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQV 738 (1019)
Q Consensus 659 ~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~a 738 (1019)
...|+.+|+.++......+.++||||.+....+.+...|...|+++..++|.+...+|..+...++.+. ++++|..
T Consensus 410 ~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g~----VlIATdm 485 (790)
T PRK09200 410 LDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKGA----VTVATNM 485 (790)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCCe----EEEEccc
Confidence 356999999999887778999999999999999999999999999999999998888877777776552 8899999
Q ss_pred cccccCc---ccCC-----EEEEcCCCCCchhhhhhhhhhhhhCCCCcEEEEEEeeCCCHHHHHHHH
Q 001731 739 GGLGLTL---TKAD-----RVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRK 797 (1019)
Q Consensus 739 gg~GLNL---t~A~-----~VIi~D~~WNp~~~~QaiGRa~RiGQ~k~V~VyrLit~gTiEEkI~~r 797 (1019)
+|+|+|+ +.+. +||+||.|-|+..|.|++||++|.|..-.+.. ++ |.|+.++++
T Consensus 486 AgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~--~i---s~eD~l~~~ 547 (790)
T PRK09200 486 AGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQF--FI---SLEDDLLKR 547 (790)
T ss_pred hhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEE--EE---cchHHHHHh
Confidence 9999999 5777 99999999999999999999999998865433 22 446666654
No 75
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.79 E-value=1.2e-18 Score=205.77 Aligned_cols=347 Identities=15% Similarity=0.168 Sum_probs=220.6
Q ss_pred cccCccccCCCchHHHHHHHHHHHhhcCC-CceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCc-ccHHHHHHHH
Q 001731 294 YMLPGKIGNMLFPHQREGLRWLWSLHCQG-KGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK-TLLSHWIKEL 371 (1019)
Q Consensus 294 ~~lp~~i~~~L~phQ~egV~~L~~~~~~~-~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~-sLl~qW~~E~ 371 (1019)
+..|......+|+||..+|+.+.+.+..+ ..++|++.||+|||.+||++|..|++.+..+++|+++-. +|+.|-...|
T Consensus 156 ~~~~~~s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af 235 (875)
T COG4096 156 AYIDIDSAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAF 235 (875)
T ss_pred ccCcccccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHH
Confidence 34455556679999999999999887665 468999999999999999999999999999999999997 7788989899
Q ss_pred HHhcCCCcEEEEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcc
Q 001731 372 TAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPS 451 (1019)
Q Consensus 372 ~k~~~~~~v~~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~ 451 (1019)
..+.|............. ...+.|+++||+++........ .....+....||+||+||||+- .
T Consensus 236 ~~~~P~~~~~n~i~~~~~---------~~s~~i~lsTyqt~~~~~~~~~-----~~~~~f~~g~FDlIvIDEaHRg---i 298 (875)
T COG4096 236 EDFLPFGTKMNKIEDKKG---------DTSSEIYLSTYQTMTGRIEQKE-----DEYRRFGPGFFDLIVIDEAHRG---I 298 (875)
T ss_pred HHhCCCccceeeeecccC---------CcceeEEEeehHHHHhhhhccc-----cccccCCCCceeEEEechhhhh---H
Confidence 999998766544332211 1257899999999987655431 1122345667999999999983 2
Q ss_pred hHHhHHhhcCCcccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHH
Q 001731 452 TQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELR 531 (1019)
Q Consensus 452 s~~~kal~~l~~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~~L~ 531 (1019)
...++.+...-...+++|||||-...-..-|.+|+ ..|+.......+...
T Consensus 299 ~~~~~~I~dYFdA~~~gLTATP~~~~d~~T~~~F~-----------------g~Pt~~YsleeAV~D------------- 348 (875)
T COG4096 299 YSEWSSILDYFDAATQGLTATPKETIDRSTYGFFN-----------------GEPTYAYSLEEAVED------------- 348 (875)
T ss_pred HhhhHHHHHHHHHHHHhhccCcccccccccccccC-----------------CCcceeecHHHHhhc-------------
Confidence 33344555555667788899996522111122221 222222111111000
Q ss_pred HHhHHHHHHhhhhcccccCccccccccCccceEEEEE--c--------CCHHHHHHHHHHHhhHHHhhhcCCChHHHHHH
Q 001731 532 ERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWL--R--------LTSCQRQLYEAFLNSEIVLSAFDGSPLAALTI 601 (1019)
Q Consensus 532 ~~i~p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~--~--------ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~ 601 (1019)
..|-+.....+.+ . ++ .+.+++...+..
T Consensus 349 ------------------------GfLvpy~vi~i~~~~~~~G~~~~~~s-erek~~g~~i~~----------------- 386 (875)
T COG4096 349 ------------------------GFLVPYKVIRIDTDFDLDGWKPDAGS-EREKLQGEAIDE----------------- 386 (875)
T ss_pred ------------------------cccCCCCceEEeeeccccCcCcCccc-hhhhhhccccCc-----------------
Confidence 0011111111111 1 11 111111111000
Q ss_pred HHHHhcChhhhhhhhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhcc---C--
Q 001731 602 LKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIP---E-- 676 (1019)
Q Consensus 602 Lrkic~hP~ll~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~---~-- 676 (1019)
. +.... ..++.... ........+...|..... .
T Consensus 387 -------d---------------d~~~~-------------------~~d~dr~~-v~~~~~~~V~r~~~~~l~~~~~g~ 424 (875)
T COG4096 387 -------D---------------DQNFE-------------------ARDFDRTL-VIPFRTETVARELTEYLKRGATGD 424 (875)
T ss_pred -------c---------------ccccc-------------------ccccchhc-cccchHHHHHHHHHHHhccccCCC
Confidence 0 00000 00000000 001111222222222222 2
Q ss_pred -CCceeEecccHHHHHHHHHHHhhc----C-CeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCE
Q 001731 677 -GHNVLIFSQTRKMLNLIQESIGSK----G-YKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADR 750 (1019)
Q Consensus 677 -g~KvLIFsq~~~~ldiL~~~L~~~----g-i~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~ 750 (1019)
-.|+||||.....++.|...|... + -=+..|+|... +=++.|+.|...+..+.+.+|.+.+.+|+|.+.+-.
T Consensus 425 ~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~--~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~n 502 (875)
T COG4096 425 EIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAE--QAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVN 502 (875)
T ss_pred ccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccch--hhHHHHHHHHhcCCCCceEEehhhhhcCCCchheee
Confidence 358999999999999999999765 2 23566788765 456789999887778889999999999999999999
Q ss_pred EEEcCCCCCchhhhhhhhhhhhh
Q 001731 751 VIVVDPAWNPSTDNQSVDRAYRI 773 (1019)
Q Consensus 751 VIi~D~~WNp~~~~QaiGRa~Ri 773 (1019)
++++-+-.+...+.|.+||.-|+
T Consensus 503 lVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 503 LVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred eeehhhhhhHHHHHHHhcCcccc
Confidence 99999999999999999999997
No 76
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.79 E-value=1.9e-17 Score=212.81 Aligned_cols=96 Identities=15% Similarity=0.253 Sum_probs=85.9
Q ss_pred CCCceeEecccHHHHHHHHHHHhhcC---------------------------------CeEEEEECCCCHHHHHHHHHh
Q 001731 676 EGHNVLIFSQTRKMLNLIQESIGSKG---------------------------------YKFLRIDGTTKASDRVKIVND 722 (1019)
Q Consensus 676 ~g~KvLIFsq~~~~ldiL~~~L~~~g---------------------------------i~~~ridG~~s~~eR~~ii~~ 722 (1019)
.+.++||||+++..++.+...|+... +.+..+||+++.++|..+.+.
T Consensus 243 ~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~ 322 (1490)
T PRK09751 243 RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQA 322 (1490)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHH
Confidence 46789999999999999998886531 124578899999999999999
Q ss_pred hhcCCCccEEEEecCCcccccCcccCCEEEEcCCCCCchhhhhhhhhhhhh
Q 001731 723 FQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRI 773 (1019)
Q Consensus 723 F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QaiGRa~Ri 773 (1019)
|+++... +|++|.+.+.|||+..++.||+|+.|.+.+.+.||+||++|.
T Consensus 323 fK~G~Lr--vLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 323 LKSGELR--CVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HHhCCce--EEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 9999854 889999999999999999999999999999999999999995
No 77
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.79 E-value=1.5e-17 Score=201.96 Aligned_cols=338 Identities=19% Similarity=0.152 Sum_probs=220.9
Q ss_pred cCCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHH-HHHHHhhcC--CC---CeEEEEeCcccH-HHHHHHHHH
Q 001731 301 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICG-FLAGLFHSR--LI---KRALVVAPKTLL-SHWIKELTA 373 (1019)
Q Consensus 301 ~~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIa-li~~l~~~~--~~---~~~LIVvP~sLl-~qW~~E~~k 373 (1019)
+..|.|+|+.++..+.+ |.+.++..+||+|||.+|+. ++..+...+ .. -.+|-|.|...+ ..-..-+..
T Consensus 20 ~~~~t~~Q~~a~~~i~~----G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~ 95 (814)
T COG1201 20 FTSLTPPQRYAIPEIHS----GENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEE 95 (814)
T ss_pred cCCCCHHHHHHHHHHhC----CCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHH
Confidence 56789999999987766 99999999999999999764 455555552 11 268999998554 445555555
Q ss_pred hc--CCCcEEEEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcc
Q 001731 374 VG--LSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPS 451 (1019)
Q Consensus 374 ~~--~~~~v~~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~ 451 (1019)
|+ .+..+.+-+|......+. ....+.++|+|||++.+.-......... ...+..+||+||.|.+.+.+
T Consensus 96 ~~~~~G~~v~vRhGDT~~~er~--r~~~~PPdILiTTPEsL~lll~~~~~r~--------~l~~vr~VIVDEiHel~~sK 165 (814)
T COG1201 96 PLRELGIEVAVRHGDTPQSEKQ--KMLKNPPHILITTPESLAILLNSPKFRE--------LLRDVRYVIVDEIHALAESK 165 (814)
T ss_pred HHHHcCCccceecCCCChHHhh--hccCCCCcEEEeChhHHHHHhcCHHHHH--------HhcCCcEEEeehhhhhhccc
Confidence 53 344555566654433322 2234678999999999865443321111 12346789999999997643
Q ss_pred --hHHhHHhhcC---C-cccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHH
Q 001731 452 --TQRAKSLLEI---P-SAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSA 525 (1019)
Q Consensus 452 --s~~~kal~~l---~-~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~ 525 (1019)
++.+-.+.++ . .-.||+||||-- ++.++ .+|+.+...
T Consensus 166 RG~~Lsl~LeRL~~l~~~~qRIGLSATV~--~~~~v---arfL~g~~~-------------------------------- 208 (814)
T COG1201 166 RGVQLALSLERLRELAGDFQRIGLSATVG--PPEEV---AKFLVGFGD-------------------------------- 208 (814)
T ss_pred cchhhhhhHHHHHhhCcccEEEeehhccC--CHHHH---HHHhcCCCC--------------------------------
Confidence 5555555444 3 467899999953 44444 333322110
Q ss_pred HHHHHHHHhHHHHHHhhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHH
Q 001731 526 VAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKI 605 (1019)
Q Consensus 526 ~~~~L~~~i~p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrki 605 (1019)
...+. .....++.++.|.++-......
T Consensus 209 -----------------~~~Iv-------~~~~~k~~~i~v~~p~~~~~~~----------------------------- 235 (814)
T COG1201 209 -----------------PCEIV-------DVSAAKKLEIKVISPVEDLIYD----------------------------- 235 (814)
T ss_pred -----------------ceEEE-------EcccCCcceEEEEecCCccccc-----------------------------
Confidence 00010 1112222233332221110000
Q ss_pred hcChhhhhhhhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhccCCCceeEecc
Q 001731 606 CDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQ 685 (1019)
Q Consensus 606 c~hP~ll~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq 685 (1019)
.| ...+-+..+.++++ +...+|||++
T Consensus 236 -~~-------------------------------------------------~~~~~~~~i~~~v~----~~~ttLIF~N 261 (814)
T COG1201 236 -EE-------------------------------------------------LWAALYERIAELVK----KHRTTLIFTN 261 (814)
T ss_pred -cc-------------------------------------------------hhHHHHHHHHHHHh----hcCcEEEEEe
Confidence 00 01112233334443 3457999999
Q ss_pred cHHHHHHHHHHHhhcC-CeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCCCCCchhhh
Q 001731 686 TRKMLNLIQESIGSKG-YKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDN 764 (1019)
Q Consensus 686 ~~~~ldiL~~~L~~~g-i~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~ 764 (1019)
.+.+.+.+...|...+ ..+..-||+.+.++|..+-++|.+|.-. .++||.....|||...++.||+|.+|-.-+...
T Consensus 262 TR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lr--avV~TSSLELGIDiG~vdlVIq~~SP~sV~r~l 339 (814)
T COG1201 262 TRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELK--AVVATSSLELGIDIGDIDLVIQLGSPKSVNRFL 339 (814)
T ss_pred ChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCce--EEEEccchhhccccCCceEEEEeCCcHHHHHHh
Confidence 9999999999999886 8899999999999999999999999843 677889999999999999999999999999999
Q ss_pred hhhhhhh-hhCCCCcEEEEEEeeCCCHHHHHHHHHHHHH
Q 001731 765 QSVDRAY-RIGQKKDVVVYRLMTCGTVEEKIYRKQIFKG 802 (1019)
Q Consensus 765 QaiGRa~-RiGQ~k~V~VyrLit~gTiEEkI~~rq~~K~ 802 (1019)
||+||++ |+|... -+++++.+ .++.+-.....+.
T Consensus 340 QRiGRsgHr~~~~S---kg~ii~~~-r~dllE~~vi~~~ 374 (814)
T COG1201 340 QRIGRAGHRLGEVS---KGIIIAED-RDDLLECLVLADL 374 (814)
T ss_pred HhccccccccCCcc---cEEEEecC-HHHHHHHHHHHHH
Confidence 9999994 555433 34445555 5666555544443
No 78
>PRK09401 reverse gyrase; Reviewed
Probab=99.78 E-value=1.5e-17 Score=213.03 Aligned_cols=104 Identities=17% Similarity=0.162 Sum_probs=84.6
Q ss_pred hHHHHHHHHHhhccCCCceeEecccHHH---HHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEe---
Q 001731 662 KISFILSLLDKLIPEGHNVLIFSQTRKM---LNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLT--- 735 (1019)
Q Consensus 662 Kl~~L~~LL~~~~~~g~KvLIFsq~~~~---ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlS--- 735 (1019)
|...|.+++..+ +..+||||+.... ++.|...|...|+++..+||++ .+.+++|.+|.. .|++.+
T Consensus 316 k~~~L~~ll~~l---~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~-~VLVatas~ 386 (1176)
T PRK09401 316 SVEKLVELVKRL---GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGEV-DVLVGVASY 386 (1176)
T ss_pred HHHHHHHHHHhc---CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCC-CEEEEecCC
Confidence 455566666554 4579999998766 9999999999999999999999 234699999984 444444
Q ss_pred cCCcccccCccc-CCEEEEcCCCC------CchhhhhhhhhhhhhC
Q 001731 736 SQVGGLGLTLTK-ADRVIVVDPAW------NPSTDNQSVDRAYRIG 774 (1019)
Q Consensus 736 T~agg~GLNLt~-A~~VIi~D~~W------Np~~~~QaiGRa~RiG 774 (1019)
|.++++|||++. .++||+|+.|- ....+.+++||+.++-
T Consensus 387 tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~~~ 432 (1176)
T PRK09401 387 YGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLSLL 432 (1176)
T ss_pred CCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHhhc
Confidence 789999999998 89999999998 6777889999997543
No 79
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.78 E-value=1.4e-17 Score=200.27 Aligned_cols=118 Identities=15% Similarity=0.150 Sum_probs=107.9
Q ss_pred hhhHHHHHHHHHhhccCCCceeEecccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCc
Q 001731 660 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVG 739 (1019)
Q Consensus 660 S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~ag 739 (1019)
..|+.++.+.+.++...|+.|||||.+....+.|...|...|+++..++|. ..+|+..+..|..++.. ++|+|..+
T Consensus 388 ~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g~--VtIATnmA 463 (745)
T TIGR00963 388 EEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKGA--VTIATNMA 463 (745)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCce--EEEEeccc
Confidence 458889999888888899999999999999999999999999999999998 77999999999887755 89999999
Q ss_pred ccccCccc-------CCEEEEcCCCCCchhhhhhhhhhhhhCCCCcEEE
Q 001731 740 GLGLTLTK-------ADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVV 781 (1019)
Q Consensus 740 g~GLNLt~-------A~~VIi~D~~WNp~~~~QaiGRa~RiGQ~k~V~V 781 (1019)
|+|+|+.. ..+||.+++|-|+..+.|++||++|.|..-....
T Consensus 464 gRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~ 512 (745)
T TIGR00963 464 GRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRF 512 (745)
T ss_pred cCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEE
Confidence 99999987 6799999999999999999999999999866543
No 80
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.77 E-value=3.3e-17 Score=199.05 Aligned_cols=108 Identities=14% Similarity=0.187 Sum_probs=90.7
Q ss_pred CCCceeEecccHHHHHHHHHHHhhc--CCeEEEEECCCCHHHHHHHHHhh-hcCCCccEEEEecCCcccccCcccCCEEE
Q 001731 676 EGHNVLIFSQTRKMLNLIQESIGSK--GYKFLRIDGTTKASDRVKIVNDF-QEGDVAPIFLLTSQVGGLGLTLTKADRVI 752 (1019)
Q Consensus 676 ~g~KvLIFsq~~~~ldiL~~~L~~~--gi~~~ridG~~s~~eR~~ii~~F-~~~~~~~V~LlST~agg~GLNLt~A~~VI 752 (1019)
.+.++|||+.....++.+...|... ++.+..+||++++. ++.+++| .++. .-+|++|.++++||+++++++||
T Consensus 394 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk--~kILVATdIAERGIDIp~V~~VI 469 (675)
T PHA02653 394 KGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKN--PSIIISTPYLESSVTIRNATHVY 469 (675)
T ss_pred cCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCc--eeEEeccChhhccccccCeeEEE
Confidence 4568999999999999999999877 79999999999863 5677787 4554 34899999999999999999999
Q ss_pred EcC---CC---------CCchhhhhhhhhhhhhCCCCcEEEEEEeeCCCH
Q 001731 753 VVD---PA---------WNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTV 790 (1019)
Q Consensus 753 i~D---~~---------WNp~~~~QaiGRa~RiGQ~k~V~VyrLit~gTi 790 (1019)
.++ .| .+.+.+.||.||++|. ++-.+|+|++....
T Consensus 470 D~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~---~~G~c~rLyt~~~~ 516 (675)
T PHA02653 470 DTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV---SPGTYVYFYDLDLL 516 (675)
T ss_pred ECCCccCCCcccCcccccCHHHHHHhccCcCCC---CCCeEEEEECHHHh
Confidence 997 22 2777899999999997 46788999988764
No 81
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.76 E-value=2.3e-17 Score=188.50 Aligned_cols=117 Identities=18% Similarity=0.209 Sum_probs=106.8
Q ss_pred hhhhHHHHHHHHHhhccCCCceeEecccHHHHHHHHHHH-hhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecC
Q 001731 659 ISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESI-GSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQ 737 (1019)
Q Consensus 659 ~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~~~L-~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~ 737 (1019)
.-+|+.++.+++.....+ .+|||.|+.+.+..|...| ...++.+..|||..++.+|...+++|+.|..+ +|++|.
T Consensus 371 e~~K~lA~rq~v~~g~~P--P~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~Iw--vLicTd 446 (593)
T KOG0344|consen 371 EKGKLLALRQLVASGFKP--PVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIW--VLICTD 446 (593)
T ss_pred chhHHHHHHHHHhccCCC--CeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCee--EEEehh
Confidence 356888888888876443 5999999999999999999 67799999999999999999999999999987 899999
Q ss_pred CcccccCcccCCEEEEcCCCCCchhhhhhhhhhhhhCCCCcE
Q 001731 738 VGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDV 779 (1019)
Q Consensus 738 agg~GLNLt~A~~VIi~D~~WNp~~~~QaiGRa~RiGQ~k~V 779 (1019)
+.++|+++.+++.||+||.|-+-..|++|+||++|.|+....
T Consensus 447 ll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~A 488 (593)
T KOG0344|consen 447 LLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKA 488 (593)
T ss_pred hhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcce
Confidence 999999999999999999999999999999999999987654
No 82
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.76 E-value=3.9e-17 Score=203.53 Aligned_cols=335 Identities=19% Similarity=0.213 Sum_probs=222.9
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHH-HHHHHHhhcCCCCeEEEEeCc-ccHHHHHHHHHHhcC----
Q 001731 303 MLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQIC-GFLAGLFHSRLIKRALVVAPK-TLLSHWIKELTAVGL---- 376 (1019)
Q Consensus 303 ~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaI-ali~~l~~~~~~~~~LIVvP~-sLl~qW~~E~~k~~~---- 376 (1019)
.||+||.++++.+.+ |++.|+.-+||+|||..-+ .++..+... ...++|+|-|+ .|...+...|.++.-
T Consensus 70 ~lY~HQ~~A~~~~~~----G~~vvVtTgTgSGKTe~FllPIld~~l~~-~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~ 144 (851)
T COG1205 70 RLYSHQVDALRLIRE----GRNVVVTTGTGSGKTESFLLPILDHLLRD-PSARALLLYPTNALANDQAERLRELISDLPG 144 (851)
T ss_pred cccHHHHHHHHHHHC----CCCEEEECCCCCchhHHHHHHHHHHHhhC-cCccEEEEechhhhHhhHHHHHHHHHHhCCC
Confidence 399999999998887 8999999999999999844 455555444 34589999998 556778888887642
Q ss_pred CCcEEEEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccc-cCCCcccCcCCCCCCCccEEEEcCCcccCC-cchHH
Q 001731 377 SAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSL-RGSSFISDEAGDDDAIWDYMILDEGHLIKN-PSTQR 454 (1019)
Q Consensus 377 ~~~v~~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l-~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN-~~s~~ 454 (1019)
...+..|.|.....++. ....+..+|++|+|+|+....-.. ....+ ....+.+|||||+|-++. ..|..
T Consensus 145 ~v~~~~y~Gdt~~~~r~--~~~~~pp~IllTNpdMLh~~llr~~~~~~~-------~~~~Lk~lVvDElHtYrGv~GS~v 215 (851)
T COG1205 145 KVTFGRYTGDTPPEERR--AIIRNPPDILLTNPDMLHYLLLRNHDAWLW-------LLRNLKYLVVDELHTYRGVQGSEV 215 (851)
T ss_pred cceeeeecCCCChHHHH--HHHhCCCCEEEeCHHHHHHHhccCcchHHH-------HHhcCcEEEEecceeccccchhHH
Confidence 34556676765544432 223467899999999997532211 11111 122389999999999977 45666
Q ss_pred hHHhhcCC--------cccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHH
Q 001731 455 AKSLLEIP--------SAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAV 526 (1019)
Q Consensus 455 ~kal~~l~--------~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~ 526 (1019)
+..+++|. ....|+.|||- .++.| |...+..-
T Consensus 216 A~llRRL~~~~~~~~~~~q~i~~SAT~--~np~e------------------~~~~l~~~-------------------- 255 (851)
T COG1205 216 ALLLRRLLRRLRRYGSPLQIICTSATL--ANPGE------------------FAEELFGR-------------------- 255 (851)
T ss_pred HHHHHHHHHHHhccCCCceEEEEeccc--cChHH------------------HHHHhcCC--------------------
Confidence 66666652 34458899995 23333 22222110
Q ss_pred HHHHHHHhHHHHHHhhhhcccccCccccccccCcc-ceEEEEEcCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHH
Q 001731 527 AKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKK-NEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKI 605 (1019)
Q Consensus 527 ~~~L~~~i~p~~lRR~k~dv~~~~~~~~~~~LP~k-~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrki 605 (1019)
....+..+ ..-|.. ...+++-+........ .
T Consensus 256 ---------------~f~~~v~~------~g~~~~~~~~~~~~p~~~~~~~~---~------------------------ 287 (851)
T COG1205 256 ---------------DFEVPVDE------DGSPRGLRYFVRREPPIRELAES---I------------------------ 287 (851)
T ss_pred ---------------cceeeccC------CCCCCCceEEEEeCCcchhhhhh---c------------------------
Confidence 00000000 011111 1122222221111100 0
Q ss_pred hcChhhhhhhhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhccCCCceeEecc
Q 001731 606 CDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQ 685 (1019)
Q Consensus 606 c~hP~ll~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq 685 (1019)
.-.+...+..++..+...+-++|+|+.
T Consensus 288 -----------------------------------------------------r~s~~~~~~~~~~~~~~~~~~tL~F~~ 314 (851)
T COG1205 288 -----------------------------------------------------RRSALAELATLAALLVRNGIQTLVFFR 314 (851)
T ss_pred -----------------------------------------------------ccchHHHHHHHHHHHHHcCceEEEEEe
Confidence 011333344444555567899999999
Q ss_pred cHHHHHHHH----HHHhhcC----CeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCCC
Q 001731 686 TRKMLNLIQ----ESIGSKG----YKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPA 757 (1019)
Q Consensus 686 ~~~~ldiL~----~~L~~~g----i~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~ 757 (1019)
++..++.+. ..+...+ ..+..+.|++...+|.++...|+.++.. ++++|.+.-.|+++.+.+.||.+..|
T Consensus 315 sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~--~~~st~AlelgidiG~ldavi~~g~P 392 (851)
T COG1205 315 SRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELL--GVIATNALELGIDIGSLDAVIAYGYP 392 (851)
T ss_pred hhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCcc--EEecchhhhhceeehhhhhHhhcCCC
Confidence 999998886 4444445 6788999999999999999999999866 99999999999999999999999999
Q ss_pred C-CchhhhhhhhhhhhhCCCCcEEEEEEeeCCCHHHHHHH
Q 001731 758 W-NPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYR 796 (1019)
Q Consensus 758 W-Np~~~~QaiGRa~RiGQ~k~V~VyrLit~gTiEEkI~~ 796 (1019)
- +-....|+.||++|-||.-- ++...-...++..+..
T Consensus 393 ~~s~~~~~Q~~GRaGR~~~~~l--~~~v~~~~~~d~yy~~ 430 (851)
T COG1205 393 GVSVLSFRQRAGRAGRRGQESL--VLVVLRSDPLDSYYLR 430 (851)
T ss_pred CchHHHHHHhhhhccCCCCCce--EEEEeCCCccchhhhh
Confidence 8 88999999999999995443 3333336677776653
No 83
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.76 E-value=1.3e-16 Score=187.09 Aligned_cols=305 Identities=18% Similarity=0.232 Sum_probs=202.0
Q ss_pred ccCCCchHHHHHHHHHHHhhcCC--CceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccH-HHHHHHHHHhcC
Q 001731 300 IGNMLFPHQREGLRWLWSLHCQG--KGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLL-SHWIKELTAVGL 376 (1019)
Q Consensus 300 i~~~L~phQ~egV~~L~~~~~~~--~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl-~qW~~E~~k~~~ 376 (1019)
+...|...|+.++.-+..-.... -.-+|--++|+|||+.|+..+......+ .-+..++|+.++ .|....+.+|.+
T Consensus 259 LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G--~Q~ALMAPTEILA~QH~~~~~~~l~ 336 (677)
T COG1200 259 LPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAG--YQAALMAPTEILAEQHYESLRKWLE 336 (677)
T ss_pred CCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcC--CeeEEeccHHHHHHHHHHHHHHHhh
Confidence 44567889999998776533332 2337777999999998765555554443 578999999776 788999999987
Q ss_pred CCcEE--EEcccccc-hhhHHHHHh-hhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcch
Q 001731 377 SAKIR--EYFGTCVK-TRQYELQYV-LQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPST 452 (1019)
Q Consensus 377 ~~~v~--~~~g~~~~-~~~~~~~~~-~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s 452 (1019)
...+. ...|.-.. .++..+..+ .+..++||-|+-.+...... .+..+||+||=||+. .
T Consensus 337 ~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F---------------~~LgLVIiDEQHRFG---V 398 (677)
T COG1200 337 PLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEF---------------HNLGLVIIDEQHRFG---V 398 (677)
T ss_pred hcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceee---------------cceeEEEEecccccc---H
Confidence 54443 34443332 333333333 33479999999998755442 236899999999983 2
Q ss_pred HHhHHhhcC-C-cccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHH
Q 001731 453 QRAKSLLEI-P-SAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKEL 530 (1019)
Q Consensus 453 ~~~kal~~l-~-~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~~L 530 (1019)
.....++.- . .++.+.||||||...+.=-
T Consensus 399 ~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt------------------------------------------------- 429 (677)
T COG1200 399 HQRLALREKGEQNPHVLVMTATPIPRTLALT------------------------------------------------- 429 (677)
T ss_pred HHHHHHHHhCCCCCcEEEEeCCCchHHHHHH-------------------------------------------------
Confidence 222333332 3 5899999999997654310
Q ss_pred HHHhHHHHHHhhhhcccccCccccccccCcc--ceEEEEEcCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcC
Q 001731 531 RERIQPYFLRRLKNEVFHEDDVTSSATLSKK--NEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDH 608 (1019)
Q Consensus 531 ~~~i~p~~lRR~k~dv~~~~~~~~~~~LP~k--~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~h 608 (1019)
++.+.+......+|+. ...+.+++.... .++|+.+
T Consensus 430 ---------------~fgDldvS~IdElP~GRkpI~T~~i~~~~~-~~v~e~i--------------------------- 466 (677)
T COG1200 430 ---------------AFGDLDVSIIDELPPGRKPITTVVIPHERR-PEVYERI--------------------------- 466 (677)
T ss_pred ---------------HhccccchhhccCCCCCCceEEEEeccccH-HHHHHHH---------------------------
Confidence 0001111112235543 334444443322 2233322
Q ss_pred hhhhhhhhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhccCCCceeEecccHH
Q 001731 609 PLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRK 688 (1019)
Q Consensus 609 P~ll~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~ 688 (1019)
.+-...|+++.+-|.-++
T Consensus 467 --------------------------------------------------------------~~ei~~GrQaY~VcPLIe 484 (677)
T COG1200 467 --------------------------------------------------------------REEIAKGRQAYVVCPLIE 484 (677)
T ss_pred --------------------------------------------------------------HHHHHcCCEEEEEecccc
Confidence 122225666666665443
Q ss_pred --------HHHHHHHHHhhc--CCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCCC-
Q 001731 689 --------MLNLIQESIGSK--GYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPA- 757 (1019)
Q Consensus 689 --------~ldiL~~~L~~~--gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~- 757 (1019)
.+..+...|... ++++..+||.|+.+++++++.+|++++.. +|++|-+..+|+|+++|+.+||+++.
T Consensus 485 ESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~--ILVaTTVIEVGVdVPnATvMVIe~AER 562 (677)
T COG1200 485 ESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEID--ILVATTVIEVGVDVPNATVMVIENAER 562 (677)
T ss_pred ccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCc--EEEEeeEEEecccCCCCeEEEEechhh
Confidence 233344444422 67899999999999999999999999877 99999999999999999999999987
Q ss_pred CCchhhhhhhhhhhhhCCCCcEE
Q 001731 758 WNPSTDNQSVDRAYRIGQKKDVV 780 (1019)
Q Consensus 758 WNp~~~~QaiGRa~RiGQ~k~V~ 780 (1019)
+--+..-|-.||++|=+...-|.
T Consensus 563 FGLaQLHQLRGRVGRG~~qSyC~ 585 (677)
T COG1200 563 FGLAQLHQLRGRVGRGDLQSYCV 585 (677)
T ss_pred hhHHHHHHhccccCCCCcceEEE
Confidence 57889999999999966655554
No 84
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.76 E-value=1.6e-16 Score=182.36 Aligned_cols=85 Identities=19% Similarity=0.234 Sum_probs=72.2
Q ss_pred CCCceeEecccHHHHHHHHHHHhhcC--CeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEE
Q 001731 676 EGHNVLIFSQTRKMLNLIQESIGSKG--YKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIV 753 (1019)
Q Consensus 676 ~g~KvLIFsq~~~~ldiL~~~L~~~g--i~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi 753 (1019)
.+.|+|||++....++.+...|...| +.+..++|.++..+|.++. . ..+|++|++.++|||+... .||
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~------~--~~iLVaTdv~~rGiDi~~~-~vi- 340 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM------Q--FDILLGTSTVDVGVDFKRD-WLI- 340 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc------c--CCEEEEecHHhcccCCCCc-eEE-
Confidence 57899999999999999999998764 6788999999999887653 2 2388999999999999864 666
Q ss_pred cCCCCCchhhhhhhhhhh
Q 001731 754 VDPAWNPSTDNQSVDRAY 771 (1019)
Q Consensus 754 ~D~~WNp~~~~QaiGRa~ 771 (1019)
++ |-++..|.||+||++
T Consensus 341 ~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred EC-CCCHHHHhhhcccCC
Confidence 56 678899999999985
No 85
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.75 E-value=1.4e-17 Score=189.51 Aligned_cols=312 Identities=17% Similarity=0.208 Sum_probs=213.4
Q ss_pred hHHHHHHHHHHHhhcCCCceEEEcCCCchHHHH-HHHHHHHHhhcCCCCeEEEEeCcccH-HHHHHHHHHhcC---CCcE
Q 001731 306 PHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQ-ICGFLAGLFHSRLIKRALVVAPKTLL-SHWIKELTAVGL---SAKI 380 (1019)
Q Consensus 306 phQ~egV~~L~~~~~~~~GgILaDemGLGKTlq-aIali~~l~~~~~~~~~LIVvP~sLl-~qW~~E~~k~~~---~~~v 380 (1019)
|.|..+|..... +-.-|+-.--|+|||+. +++.+..+-........+||+|+.-+ .|....|.+.++ +.+.
T Consensus 50 kiQaaAIP~~~~----kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~c 125 (980)
T KOG4284|consen 50 KIQAAAIPAIFS----KMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARC 125 (980)
T ss_pred chhhhhhhhhhc----ccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCcce
Confidence 578888875554 55678888999999987 33344444444444578999999554 678888888877 4566
Q ss_pred EEEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcc---hHHhHH
Q 001731 381 REYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPS---TQRAKS 457 (1019)
Q Consensus 381 ~~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~---s~~~ka 457 (1019)
.+|.|+....... ..++.++|+|-|++.+......- .++.....++|||||.++-... -.+...
T Consensus 126 svfIGGT~~~~d~---~rlk~~rIvIGtPGRi~qL~el~----------~~n~s~vrlfVLDEADkL~~t~sfq~~In~i 192 (980)
T KOG4284|consen 126 SVFIGGTAHKLDL---IRLKQTRIVIGTPGRIAQLVELG----------AMNMSHVRLFVLDEADKLMDTESFQDDINII 192 (980)
T ss_pred EEEecCchhhhhh---hhhhhceEEecCchHHHHHHHhc----------CCCccceeEEEeccHHhhhchhhHHHHHHHH
Confidence 6777765433221 23567889999999987655422 2345668999999999996543 346667
Q ss_pred hhcCCccc-EEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHHHHh-H
Q 001731 458 LLEIPSAH-RIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERI-Q 535 (1019)
Q Consensus 458 l~~l~~~~-RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~~L~~~i-~ 535 (1019)
+..++..+ .++.|||=-+| +.++ |...+ .
T Consensus 193 i~slP~~rQv~a~SATYp~n-Ldn~------------------------------------------------Lsk~mrd 223 (980)
T KOG4284|consen 193 INSLPQIRQVAAFSATYPRN-LDNL------------------------------------------------LSKFMRD 223 (980)
T ss_pred HHhcchhheeeEEeccCchh-HHHH------------------------------------------------HHHHhcc
Confidence 77776544 56789994322 2222 11111 1
Q ss_pred HHHHHhhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcChhhhhhh
Q 001731 536 PYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLTKR 615 (1019)
Q Consensus 536 p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~ll~~~ 615 (1019)
|.++|-...++ .|-....+++- .|..|.-..
T Consensus 224 p~lVr~n~~d~----------~L~GikQyv~~-------------------------------------~~s~nnsve-- 254 (980)
T KOG4284|consen 224 PALVRFNADDV----------QLFGIKQYVVA-------------------------------------KCSPNNSVE-- 254 (980)
T ss_pred cceeecccCCc----------eeechhheeee-------------------------------------ccCCcchHH--
Confidence 22222222211 01111111111 011110000
Q ss_pred hhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhccCCCceeEecccHHHHHHHHH
Q 001731 616 AAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQE 695 (1019)
Q Consensus 616 ~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~~ 695 (1019)
..--|++.|-+++..+ +=...||||....-++-|+.
T Consensus 255 ------------------------------------------emrlklq~L~~vf~~i--py~QAlVF~~~~sra~~~a~ 290 (980)
T KOG4284|consen 255 ------------------------------------------EMRLKLQKLTHVFKSI--PYVQALVFCDQISRAEPIAT 290 (980)
T ss_pred ------------------------------------------HHHHHHHHHHHHHhhC--chHHHHhhhhhhhhhhHHHH
Confidence 0122666676766665 33458999999999999999
Q ss_pred HHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCCCCCchhhhhhhhhhhhhCC
Q 001731 696 SIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQ 775 (1019)
Q Consensus 696 ~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QaiGRa~RiGQ 775 (1019)
.|...|+.+-.|.|.|++.+|.-+++.+++-.- -+|++|+..++||+-..+|.||++|+|-+..+|.+|||||+|.|.
T Consensus 291 ~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~--rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~ 368 (980)
T KOG4284|consen 291 HLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRV--RILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGA 368 (980)
T ss_pred HhhccCCCeEEeccccchhHHHHHHHHhhhceE--EEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccc
Confidence 999999999999999999999999999887542 389999999999999999999999999999999999999999998
Q ss_pred CCc
Q 001731 776 KKD 778 (1019)
Q Consensus 776 ~k~ 778 (1019)
.--
T Consensus 369 ~G~ 371 (980)
T KOG4284|consen 369 HGA 371 (980)
T ss_pred cce
Confidence 653
No 86
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.75 E-value=6.8e-17 Score=175.78 Aligned_cols=309 Identities=22% Similarity=0.269 Sum_probs=204.1
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHH--HHHHH-----hhcCCCCeEEEEeCcc-cHHHHHHHHHHh
Q 001731 303 MLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICG--FLAGL-----FHSRLIKRALVVAPKT-LLSHWIKELTAV 374 (1019)
Q Consensus 303 ~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIa--li~~l-----~~~~~~~~~LIVvP~s-Ll~qW~~E~~k~ 374 (1019)
+..|.|-.+ |-...+|..+|-...||.|||+.-+. ++... +.......+||+.|+. |..|-.-|..++
T Consensus 242 KPtPIqSQa----WPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~ky 317 (629)
T KOG0336|consen 242 KPTPIQSQA----WPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKY 317 (629)
T ss_pred CCCcchhcc----cceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHh
Confidence 344555543 33344588999999999999975331 11111 1122334789999985 446677777776
Q ss_pred cC-CCcEEEEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCc--c
Q 001731 375 GL-SAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNP--S 451 (1019)
Q Consensus 375 ~~-~~~v~~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~--~ 451 (1019)
.- +.+...++|... +...........+++|.|+..|...... ...+.....|+|||||.++... .
T Consensus 318 syng~ksvc~ygggn--R~eqie~lkrgveiiiatPgrlndL~~~----------n~i~l~siTYlVlDEADrMLDMgFE 385 (629)
T KOG0336|consen 318 SYNGLKSVCVYGGGN--RNEQIEDLKRGVEIIIATPGRLNDLQMD----------NVINLASITYLVLDEADRMLDMGFE 385 (629)
T ss_pred hhcCcceEEEecCCC--chhHHHHHhcCceEEeeCCchHhhhhhc----------CeeeeeeeEEEEecchhhhhccccc
Confidence 43 233333333322 2233444556789999999988654321 1123455789999999999764 4
Q ss_pred hHHhHHhhcCCcccE-EEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHH
Q 001731 452 TQRAKSLLEIPSAHR-IIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKEL 530 (1019)
Q Consensus 452 s~~~kal~~l~~~~R-llLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~~L 530 (1019)
-++.+.+..++..+- ++-|||-
T Consensus 386 pqIrkilldiRPDRqtvmTSATW--------------------------------------------------------- 408 (629)
T KOG0336|consen 386 PQIRKILLDIRPDRQTVMTSATW--------------------------------------------------------- 408 (629)
T ss_pred HHHHHHhhhcCCcceeeeecccC---------------------------------------------------------
Confidence 577888888876665 4455662
Q ss_pred HHHhHHHHHHhhhhcccccCccccccccCccceEEEEEc---CCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhc
Q 001731 531 RERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLR---LTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICD 607 (1019)
Q Consensus 531 ~~~i~p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~---ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~ 607 (1019)
|--+||+....++ ...++++- |... ...+|..
T Consensus 409 -----P~~VrrLa~sY~K-------------ep~~v~vGsLdL~a~--------------------------~sVkQ~i- 443 (629)
T KOG0336|consen 409 -----PEGVRRLAQSYLK-------------EPMIVYVGSLDLVAV--------------------------KSVKQNI- 443 (629)
T ss_pred -----chHHHHHHHHhhh-------------CceEEEecccceeee--------------------------eeeeeeE-
Confidence 1112222211111 11111110 0000 0000000
Q ss_pred ChhhhhhhhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhccCCCceeEecccH
Q 001731 608 HPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTR 687 (1019)
Q Consensus 608 hP~ll~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~ 687 (1019)
.....+-|+..+..++..+ ....|+|||+...
T Consensus 444 -----------------------------------------------~v~~d~~k~~~~~~f~~~m-s~ndKvIiFv~~K 475 (629)
T KOG0336|consen 444 -----------------------------------------------IVTTDSEKLEIVQFFVANM-SSNDKVIIFVSRK 475 (629)
T ss_pred -----------------------------------------------EecccHHHHHHHHHHHHhc-CCCceEEEEEech
Confidence 0011233555554555444 4678999999999
Q ss_pred HHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCCCCCchhhhhhh
Q 001731 688 KMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSV 767 (1019)
Q Consensus 688 ~~ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~Qai 767 (1019)
.+++-|..-|...|+....+||+-.+.+|+.+++.|++|... +|++|+.+++||+++.++||++||.|.|-..|++|+
T Consensus 476 ~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vr--ILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRv 553 (629)
T KOG0336|consen 476 VMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVR--ILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRV 553 (629)
T ss_pred hhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceE--EEEEechhhcCCCchhcceeeccCCCccHHHHHHHh
Confidence 999999999999999999999999999999999999999865 899999999999999999999999999999999999
Q ss_pred hhhhhhCCCCcE
Q 001731 768 DRAYRIGQKKDV 779 (1019)
Q Consensus 768 GRa~RiGQ~k~V 779 (1019)
||++|.|.+-.-
T Consensus 554 GrtGRaGr~G~s 565 (629)
T KOG0336|consen 554 GRTGRAGRTGTS 565 (629)
T ss_pred cccccCCCCcce
Confidence 999999987653
No 87
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.75 E-value=6.4e-17 Score=180.20 Aligned_cols=126 Identities=25% Similarity=0.413 Sum_probs=113.1
Q ss_pred hhHHHHHHHHHhhccCCCceeEecccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcc
Q 001731 661 CKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGG 740 (1019)
Q Consensus 661 ~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg 740 (1019)
.|+.+|++.|......| +||||..-....+.|...|...|+++..+||.+.+++|.+.+.+|+..... +|+.|++..
T Consensus 453 ~Kl~wl~~~L~~f~S~g-kvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~--VlvatDvaa 529 (731)
T KOG0339|consen 453 KKLNWLLRHLVEFSSEG-KVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKP--VLVATDVAA 529 (731)
T ss_pred HHHHHHHHHhhhhccCC-cEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCc--eEEEeeHhh
Confidence 37788887777765544 799999999999999999999999999999999999999999999988755 888999999
Q ss_pred cccCcccCCEEEEcCCCCCchhhhhhhhhhhhhCCCCcEEEEEEeeCCCHH
Q 001731 741 LGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVE 791 (1019)
Q Consensus 741 ~GLNLt~A~~VIi~D~~WNp~~~~QaiGRa~RiGQ~k~V~VyrLit~gTiE 791 (1019)
+||++....+||+||..-.-.++.||+||.+|.|-+ -+.|.|+|....+
T Consensus 530 rgldI~~ikTVvnyD~ardIdththrigrtgRag~k--GvayTlvTeKDa~ 578 (731)
T KOG0339|consen 530 RGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEK--GVAYTLVTEKDAE 578 (731)
T ss_pred cCCCccccceeecccccchhHHHHHHhhhccccccc--ceeeEEechhhHH
Confidence 999999999999999999999999999999999987 5678999976554
No 88
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.74 E-value=8.2e-17 Score=176.09 Aligned_cols=321 Identities=16% Similarity=0.174 Sum_probs=207.2
Q ss_pred hHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCc-ccHHHHHHHHHHhcCCCcEEEEc
Q 001731 306 PHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK-TLLSHWIKELTAVGLSAKIREYF 384 (1019)
Q Consensus 306 phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~-sLl~qW~~E~~k~~~~~~v~~~~ 384 (1019)
|-|..++.-... ......++++||.||++. ..+...-..+-++||.|. .|+....+.+.++-....-....
T Consensus 23 ~LQE~A~~c~VK---~k~DVyVsMPTGaGKSLC-----yQLPaL~~~gITIV~SPLiALIkDQiDHL~~LKVp~~SLNSK 94 (641)
T KOG0352|consen 23 RLQEQAINCIVK---RKCDVYVSMPTGAGKSLC-----YQLPALVHGGITIVISPLIALIKDQIDHLKRLKVPCESLNSK 94 (641)
T ss_pred hHHHHHHHHHHh---ccCcEEEeccCCCchhhh-----hhchHHHhCCeEEEehHHHHHHHHHHHHHHhcCCchhHhcch
Confidence 679999987776 467889999999999963 222111122468999998 77788888887753221111000
Q ss_pred ccccchhhH---HHHHhhhCCCEEEecHHHHHhcc-----ccccCCCcccCcCCCCCCCccEEEEcCCcccCCcchHH--
Q 001731 385 GTCVKTRQY---ELQYVLQDKGVLLTTYDIVRNNS-----KSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQR-- 454 (1019)
Q Consensus 385 g~~~~~~~~---~~~~~~~~~dVvItTy~~l~~~~-----~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s~~-- 454 (1019)
- +...+.. .+........++.+|+++..... ..+. ......|+++||||++..+....
T Consensus 95 l-St~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~-----------~r~~L~Y~vVDEAHCVSQWGHDFRP 162 (641)
T KOG0352|consen 95 L-STVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLA-----------NRDVLRYIVVDEAHCVSQWGHDFRP 162 (641)
T ss_pred h-hHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHh-----------hhceeeeEEechhhhHhhhccccCc
Confidence 0 1111111 12222334578999998765332 1111 23346899999999996655432
Q ss_pred ----hHHhhc-CCcccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHH
Q 001731 455 ----AKSLLE-IPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKE 529 (1019)
Q Consensus 455 ----~kal~~-l~~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~~ 529 (1019)
.-+++. +.....++||||.-..--+|+|..|++-.|-..-.-..|+..
T Consensus 163 DYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~N--------------------------- 215 (641)
T KOG0352|consen 163 DYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDN--------------------------- 215 (641)
T ss_pred chhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhh---------------------------
Confidence 223332 234455779999988888889988887666321111111110
Q ss_pred HHHHhHHHHHHhhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcCh
Q 001731 530 LRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHP 609 (1019)
Q Consensus 530 L~~~i~p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP 609 (1019)
-+|+....+. +-..+..|.-.|.|-
T Consensus 216 ----------------------------------------------LFYD~~~K~~---------I~D~~~~LaDF~~~~ 240 (641)
T KOG0352|consen 216 ----------------------------------------------LFYDNHMKSF---------ITDCLTVLADFSSSN 240 (641)
T ss_pred ----------------------------------------------hhHHHHHHHH---------hhhHhHhHHHHHHHh
Confidence 0111111110 001111222222211
Q ss_pred hhhhhhhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhccCCCceeEecccHHH
Q 001731 610 LLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKM 689 (1019)
Q Consensus 610 ~ll~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ 689 (1019)
.=-. +. +. ...| ....--||||..+..
T Consensus 241 LG~~-----------------~~-------------------~~-----~~~K------------~~~GCGIVYCRTR~~ 267 (641)
T KOG0352|consen 241 LGKH-----------------EK-------------------AS-----QNKK------------TFTGCGIVYCRTRNE 267 (641)
T ss_pred cCCh-----------------hh-------------------hh-----cCCC------------CcCcceEEEeccHHH
Confidence 0000 00 00 0000 011236999999999
Q ss_pred HHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCCCCCchhhhhhhhh
Q 001731 690 LNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDR 769 (1019)
Q Consensus 690 ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QaiGR 769 (1019)
.+.++-.|...|++..-||.+....+|..+.+.|.++... +|++|-..|+|++-+.+..||+++++-|.+.|.|.-||
T Consensus 268 cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~P--vI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGR 345 (641)
T KOG0352|consen 268 CEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIP--VIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGR 345 (641)
T ss_pred HHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCC--EEEEEeccccccCCcceeEEEecCchhhhHHHHHhccc
Confidence 9999999999999999999999999999999999999876 88899999999999999999999999999999999999
Q ss_pred hhhhCCCCcEEEEE
Q 001731 770 AYRIGQKKDVVVYR 783 (1019)
Q Consensus 770 a~RiGQ~k~V~Vyr 783 (1019)
++|.|-..-|..|+
T Consensus 346 AGRDGk~SyCRLYY 359 (641)
T KOG0352|consen 346 AGRDGKRSYCRLYY 359 (641)
T ss_pred cccCCCccceeeee
Confidence 99999998888775
No 89
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.73 E-value=4.9e-18 Score=179.82 Aligned_cols=311 Identities=22% Similarity=0.247 Sum_probs=200.8
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEc-CCCchHHHH-HHHHHHHHhhcCCCCeEEEEeCccc----HHHHHHHHHHhcC
Q 001731 303 MLFPHQREGLRWLWSLHCQGKGGILGD-DMGLGKTMQ-ICGFLAGLFHSRLIKRALVVAPKTL----LSHWIKELTAVGL 376 (1019)
Q Consensus 303 ~L~phQ~egV~~L~~~~~~~~GgILaD-emGLGKTlq-aIali~~l~~~~~~~~~LIVvP~sL----l~qW~~E~~k~~~ 376 (1019)
..-|.|.+++.-.+. |+ .|||- -.|+|||-. +|..+..+-.....-.++|+||+.- ..|...++.++..
T Consensus 107 kPSPiQeesIPiaLt----Gr-diLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~ 181 (459)
T KOG0326|consen 107 KPSPIQEESIPIALT----GR-DILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHLG 181 (459)
T ss_pred CCCCccccccceeec----ch-hhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhcccC
Confidence 456788887765544 33 45554 899999965 3334333322333336899999743 3567777777654
Q ss_pred CCcEEEEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcchH--H
Q 001731 377 SAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQ--R 454 (1019)
Q Consensus 377 ~~~v~~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s~--~ 454 (1019)
.++.+..|....+. .+......-+++|.|++.+....+.... .......+|+|||.++.....+ .
T Consensus 182 -i~vmvttGGT~lrD--DI~Rl~~~VH~~vgTPGRIlDL~~KgVa----------~ls~c~~lV~DEADKlLs~~F~~~~ 248 (459)
T KOG0326|consen 182 -IKVMVTTGGTSLRD--DIMRLNQTVHLVVGTPGRILDLAKKGVA----------DLSDCVILVMDEADKLLSVDFQPIV 248 (459)
T ss_pred -eEEEEecCCccccc--ceeeecCceEEEEcCChhHHHHHhcccc----------cchhceEEEechhhhhhchhhhhHH
Confidence 44444444332221 2222334567999999998765543221 2334678999999999775543 3
Q ss_pred hHHhhcCCcc-cEEEeecCC-CCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHHH
Q 001731 455 AKSLLEIPSA-HRIIISGTP-IQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRE 532 (1019)
Q Consensus 455 ~kal~~l~~~-~RllLTGTP-iqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~~L~~ 532 (1019)
.+.+..++.. ..++.|||- + . ...|
T Consensus 249 e~li~~lP~~rQillySATFP~--t------------------Vk~F--------------------------------- 275 (459)
T KOG0326|consen 249 EKLISFLPKERQILLYSATFPL--T------------------VKGF--------------------------------- 275 (459)
T ss_pred HHHHHhCCccceeeEEecccch--h------------------HHHH---------------------------------
Confidence 4555556544 446678882 1 0 0112
Q ss_pred HhHHHHHHhhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcChhhh
Q 001731 533 RIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLL 612 (1019)
Q Consensus 533 ~i~p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~ll 612 (1019)
+-|.++. ..++.+.-.||..-...|.+|.
T Consensus 276 -----m~~~l~k----------------Py~INLM~eLtl~GvtQyYafV------------------------------ 304 (459)
T KOG0326|consen 276 -----MDRHLKK----------------PYEINLMEELTLKGVTQYYAFV------------------------------ 304 (459)
T ss_pred -----HHHhccC----------------cceeehhhhhhhcchhhheeee------------------------------
Confidence 2222111 1111111111111111111111
Q ss_pred hhhhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhccCCCceeEecccHHHHHH
Q 001731 613 TKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNL 692 (1019)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldi 692 (1019)
..+-|+-.|-.|+.++. =...||||+++...++
T Consensus 305 ---------------------------------------------~e~qKvhCLntLfskLq--INQsIIFCNS~~rVEL 337 (459)
T KOG0326|consen 305 ---------------------------------------------EERQKVHCLNTLFSKLQ--INQSIIFCNSTNRVEL 337 (459)
T ss_pred ---------------------------------------------chhhhhhhHHHHHHHhc--ccceEEEeccchHhHH
Confidence 12335555555555553 2348999999999999
Q ss_pred HHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCCCCCchhhhhhhhhhhh
Q 001731 693 IQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYR 772 (1019)
Q Consensus 693 L~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QaiGRa~R 772 (1019)
|++.+...||.+.++|..|.++.|.++...|.+|.-. .|++|+..-+||++++.|.||+||.|.|+.+|.+|+||.+|
T Consensus 338 LAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~cr--nLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGR 415 (459)
T KOG0326|consen 338 LAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCR--NLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGR 415 (459)
T ss_pred HHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccc--eeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCcc
Confidence 9999999999999999999999999999999999743 77888999999999999999999999999999999999999
Q ss_pred hCCCCcEEEEEEee
Q 001731 773 IGQKKDVVVYRLMT 786 (1019)
Q Consensus 773 iGQ~k~V~VyrLit 786 (1019)
.|-.- ....|++
T Consensus 416 FGhlG--lAInLit 427 (459)
T KOG0326|consen 416 FGHLG--LAINLIT 427 (459)
T ss_pred CCCcc--eEEEEEe
Confidence 99643 2344554
No 90
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.71 E-value=3.2e-16 Score=201.27 Aligned_cols=131 Identities=18% Similarity=0.217 Sum_probs=91.3
Q ss_pred ccCCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCc-ccHHHHHHHHHHhcCCC
Q 001731 300 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK-TLLSHWIKELTAVGLSA 378 (1019)
Q Consensus 300 i~~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~-sLl~qW~~E~~k~~~~~ 378 (1019)
....++|+|..++..++. |+..++..+||+|||..++.++..+.. ...++|||+|+ .|..|+...|.+++...
T Consensus 75 ~g~~p~~iQ~~~i~~il~----G~d~vi~ApTGsGKT~f~l~~~~~l~~--~g~~vLIL~PTreLa~Qi~~~l~~l~~~~ 148 (1171)
T TIGR01054 75 VGSEPWSIQKMWAKRVLR----GDSFAIIAPTGVGKTTFGLAMSLFLAK--KGKRCYIILPTTLLVIQVAEKISSLAEKA 148 (1171)
T ss_pred cCCCCcHHHHHHHHHHhC----CCeEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEeCHHHHHHHHHHHHHHHHHhc
Confidence 345689999999887776 788899999999999755544443332 24689999999 66789999999887533
Q ss_pred c-----EEEEcccccchhhH-HHHHhh-hCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCC
Q 001731 379 K-----IREYFGTCVKTRQY-ELQYVL-QDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKN 449 (1019)
Q Consensus 379 ~-----v~~~~g~~~~~~~~-~~~~~~-~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN 449 (1019)
. +..++|......+. ...... +.++|+|+|++.+......+. . .++++|+||||++..
T Consensus 149 ~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~------------~-~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 149 GVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG------------P-KFDFIFVDDVDALLK 213 (1171)
T ss_pred CCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc------------C-CCCEEEEeChHhhhh
Confidence 2 22355543332222 222222 348999999999876654321 1 589999999999965
No 91
>PRK14701 reverse gyrase; Provisional
Probab=99.71 E-value=7.5e-16 Score=201.47 Aligned_cols=105 Identities=19% Similarity=0.278 Sum_probs=86.5
Q ss_pred HHHHHHHhhccCCCceeEecccHHH---HHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEec----C
Q 001731 665 FILSLLDKLIPEGHNVLIFSQTRKM---LNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTS----Q 737 (1019)
Q Consensus 665 ~L~~LL~~~~~~g~KvLIFsq~~~~---ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST----~ 737 (1019)
.|.+++..+ +..+||||+++.. ++.|...|...|+++..+||+ |.+.+++|.++... +|++| .
T Consensus 321 ~L~~ll~~~---g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G~~~--VLVaT~s~~g 390 (1638)
T PRK14701 321 HVRELLKKL---GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEEGEID--YLIGVATYYG 390 (1638)
T ss_pred HHHHHHHhC---CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHcCCCC--EEEEecCCCC
Confidence 455666554 5679999998764 589999999999999999994 99999999999855 67777 5
Q ss_pred CcccccCccc-CCEEEEcCCCC---Cchhhhhhh-------------hhhhhhCCCCcE
Q 001731 738 VGGLGLTLTK-ADRVIVVDPAW---NPSTDNQSV-------------DRAYRIGQKKDV 779 (1019)
Q Consensus 738 agg~GLNLt~-A~~VIi~D~~W---Np~~~~Qai-------------GRa~RiGQ~k~V 779 (1019)
++++|||++. +.+|||||.|- |...+.|.. ||++|.|..-++
T Consensus 391 vaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~ 449 (1638)
T PRK14701 391 TLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEG 449 (1638)
T ss_pred eeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchh
Confidence 7899999998 99999999998 777666665 999998876443
No 92
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.70 E-value=2.4e-15 Score=185.39 Aligned_cols=152 Identities=18% Similarity=0.129 Sum_probs=101.6
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCc-ccHHHHHHHHHHhcCCCcE
Q 001731 302 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK-TLLSHWIKELTAVGLSAKI 380 (1019)
Q Consensus 302 ~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~-sLl~qW~~E~~k~~~~~~v 380 (1019)
..|.++|.+++..+.... .+...+|..+||+|||...+.++...... .+.+||++|. .|..||.+.|.++++ ..+
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~-~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~--g~~vLvLvPt~~L~~Q~~~~l~~~fg-~~v 218 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAA-GFSPFLLDGVTGSGKTEVYLQAIAEVLAQ--GKQALVLVPEIALTPQMLARFRARFG-APV 218 (679)
T ss_pred CCCCHHHHHHHHHHHhcc-CCCcEEEECCCCChHHHHHHHHHHHHHHc--CCeEEEEeCcHHHHHHHHHHHHHHhC-CCE
Confidence 368999999998887632 33567888899999999887666655544 3689999998 678999999988654 456
Q ss_pred EEEcccccc-hhhHHHHHh-hhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCC--cchHHh-
Q 001731 381 REYFGTCVK-TRQYELQYV-LQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKN--PSTQRA- 455 (1019)
Q Consensus 381 ~~~~g~~~~-~~~~~~~~~-~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN--~~s~~~- 455 (1019)
..+++.... .+...+..+ .+..+|+|.|+..+... -.++.+||+||+|...- .....+
T Consensus 219 ~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~~p-----------------~~~l~liVvDEeh~~s~~~~~~p~y~ 281 (679)
T PRK05580 219 AVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALFLP-----------------FKNLGLIIVDEEHDSSYKQQEGPRYH 281 (679)
T ss_pred EEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhccc-----------------ccCCCEEEEECCCccccccCcCCCCc
Confidence 666665333 222222222 23568999998765311 23468999999997632 111111
Q ss_pred -H---Hh-hcCCcccEEEeecCCC
Q 001731 456 -K---SL-LEIPSAHRIIISGTPI 474 (1019)
Q Consensus 456 -k---al-~~l~~~~RllLTGTPi 474 (1019)
+ .+ ........+++||||.
T Consensus 282 ~r~va~~ra~~~~~~~il~SATps 305 (679)
T PRK05580 282 ARDLAVVRAKLENIPVVLGSATPS 305 (679)
T ss_pred HHHHHHHHhhccCCCEEEEcCCCC
Confidence 1 11 1234456788999995
No 93
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.70 E-value=7.6e-16 Score=191.34 Aligned_cols=108 Identities=20% Similarity=0.289 Sum_probs=93.4
Q ss_pred CCceeEecccHHHHHHHHHHHhh---cCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEE
Q 001731 677 GHNVLIFSQTRKMLNLIQESIGS---KGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIV 753 (1019)
Q Consensus 677 g~KvLIFsq~~~~ldiL~~~L~~---~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi 753 (1019)
+.++|||+.....++.+...|.. .++.++.+||++++++|.++++.|..+... +|++|.++.+||++.++++||.
T Consensus 209 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rk--VlVATnIAErgItIp~V~~VID 286 (819)
T TIGR01970 209 TGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRK--VVLATNIAETSLTIEGIRVVID 286 (819)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeE--EEEecchHhhcccccCceEEEE
Confidence 46799999999999999999976 478999999999999999999999987643 8899999999999999999999
Q ss_pred cCCC----CCchh--------------hhhhhhhhhhhCCCCcEEEEEEeeCCC
Q 001731 754 VDPA----WNPST--------------DNQSVDRAYRIGQKKDVVVYRLMTCGT 789 (1019)
Q Consensus 754 ~D~~----WNp~~--------------~~QaiGRa~RiGQ~k~V~VyrLit~gT 789 (1019)
++.+ +||.. +.||.||++|. ++-.+|+|++...
T Consensus 287 ~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~~ 337 (819)
T TIGR01970 287 SGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEEQ 337 (819)
T ss_pred cCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHHH
Confidence 9876 45544 78999999886 5777899998653
No 94
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.70 E-value=9.1e-17 Score=172.85 Aligned_cols=321 Identities=16% Similarity=0.149 Sum_probs=220.2
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCc-ccHHHHHHHHHHhcCCCcEE
Q 001731 303 MLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK-TLLSHWIKELTAVGLSAKIR 381 (1019)
Q Consensus 303 ~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~-sLl~qW~~E~~k~~~~~~v~ 381 (1019)
+++|.|+.+++.... +..++|..++|-||++. +.+...-..+-+|||||. +|+....-.++..+.+....
T Consensus 94 kfrplq~~ain~~ma----~ed~~lil~tgggkslc-----yqlpal~adg~alvi~plislmedqil~lkqlgi~as~l 164 (695)
T KOG0353|consen 94 KFRPLQLAAINATMA----GEDAFLILPTGGGKSLC-----YQLPALCADGFALVICPLISLMEDQILQLKQLGIDASML 164 (695)
T ss_pred hcChhHHHHhhhhhc----cCceEEEEeCCCccchh-----hhhhHHhcCCceEeechhHHHHHHHHHHHHHhCcchhhc
Confidence 589999999987766 78899999999999963 333222234678999998 88888888888887665544
Q ss_pred EEcccccchhhHHHHHh--hhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcch-------
Q 001731 382 EYFGTCVKTRQYELQYV--LQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPST------- 452 (1019)
Q Consensus 382 ~~~g~~~~~~~~~~~~~--~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s------- 452 (1019)
....+....+....... ...+.++.+|++.+.+........ +..+....|.+|-+||.|+...+..
T Consensus 165 nansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkl-----eka~~~~~~~~iaidevhccsqwghdfr~dy~ 239 (695)
T KOG0353|consen 165 NANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKL-----EKALEAGFFKLIAIDEVHCCSQWGHDFRPDYK 239 (695)
T ss_pred cCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHH-----HHHhhcceeEEEeecceeehhhhCcccCcchH
Confidence 33222222222111111 124678999999876543322211 1112344578999999999865443
Q ss_pred HHhHHhhcCCcccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHHH
Q 001731 453 QRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRE 532 (1019)
Q Consensus 453 ~~~kal~~l~~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~~L~~ 532 (1019)
.....-+.++....++||||...+-+.|.-.++..-. .-.|..-|.+|-
T Consensus 240 ~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~------~~tf~a~fnr~n------------------------- 288 (695)
T KOG0353|consen 240 ALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEA------AFTFRAGFNRPN------------------------- 288 (695)
T ss_pred HHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHh------hheeecccCCCC-------------------------
Confidence 2233335567888899999999998888776654310 012333332221
Q ss_pred HhHHHHHHhhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcChhhh
Q 001731 533 RIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLL 612 (1019)
Q Consensus 533 ~i~p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~ll 612 (1019)
... .|..++.... ..
T Consensus 289 ----------------------------l~y-ev~qkp~n~d-d~----------------------------------- 303 (695)
T KOG0353|consen 289 ----------------------------LKY-EVRQKPGNED-DC----------------------------------- 303 (695)
T ss_pred ----------------------------cee-EeeeCCCChH-HH-----------------------------------
Confidence 000 0111111000 00
Q ss_pred hhhhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhccCCCceeEecccHHHHHH
Q 001731 613 TKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNL 692 (1019)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldi 692 (1019)
+.-+..++..- -.|+.-||||-+..-.+.
T Consensus 304 --------------------------------------------------~edi~k~i~~~-f~gqsgiiyc~sq~d~ek 332 (695)
T KOG0353|consen 304 --------------------------------------------------IEDIAKLIKGD-FAGQSGIIYCFSQKDCEK 332 (695)
T ss_pred --------------------------------------------------HHHHHHHhccc-cCCCcceEEEeccccHHH
Confidence 00011111111 157788999999999999
Q ss_pred HHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCCCCCchhhhh-------
Q 001731 693 IQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQ------- 765 (1019)
Q Consensus 693 L~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~Q------- 765 (1019)
+...|+.+|+....||..+.+.+|..+...|-.++.. ++++|-+.|+||+-+.++.||+-..|-+...|.|
T Consensus 333 va~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiq--vivatvafgmgidkpdvrfvihhsl~ksienyyqasarill 410 (695)
T KOG0353|consen 333 VAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQ--VIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILL 410 (695)
T ss_pred HHHHHHhcCccccccccccCccccccccccccccceE--EEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999866 7888899999999999999999999999999999
Q ss_pred ------------------------------------hhhhhhhhCCCCcEEEEEEee
Q 001731 766 ------------------------------------SVDRAYRIGQKKDVVVYRLMT 786 (1019)
Q Consensus 766 ------------------------------------aiGRa~RiGQ~k~V~VyrLit 786 (1019)
.-||++|.|++.+|..|+=++
T Consensus 411 rmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~ 467 (695)
T KOG0353|consen 411 RMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFA 467 (695)
T ss_pred HHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechH
Confidence 579999999999998776443
No 95
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.69 E-value=7.6e-16 Score=174.08 Aligned_cols=316 Identities=19% Similarity=0.205 Sum_probs=207.4
Q ss_pred cCCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhc-CCCCeEEEEeCc-ccHHHHHHHHHHhcC--
Q 001731 301 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHS-RLIKRALVVAPK-TLLSHWIKELTAVGL-- 376 (1019)
Q Consensus 301 ~~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~-~~~~~~LIVvP~-sLl~qW~~E~~k~~~-- 376 (1019)
...|.|.|.-+|..-+ -.|.+-++..+|++|||+++ =++++... ...++.|.+||. .|.+|-..+|..-+.
T Consensus 214 ~~eLlPVQ~laVe~GL---LeG~nllVVSaTasGKTLIg--ElAGi~~~l~~g~KmlfLvPLVALANQKy~dF~~rYs~L 288 (830)
T COG1202 214 IEELLPVQVLAVEAGL---LEGENLLVVSATASGKTLIG--ELAGIPRLLSGGKKMLFLVPLVALANQKYEDFKERYSKL 288 (830)
T ss_pred cceecchhhhhhhhcc---ccCCceEEEeccCCCcchHH--HhhCcHHHHhCCCeEEEEehhHHhhcchHHHHHHHhhcc
Confidence 3468999998885422 24788899999999999852 33333332 234799999998 455666667765332
Q ss_pred CCcEEEEcccccchhhHH--HHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCc--ch
Q 001731 377 SAKIREYFGTCVKTRQYE--LQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNP--ST 452 (1019)
Q Consensus 377 ~~~v~~~~g~~~~~~~~~--~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~--~s 452 (1019)
+.++.+-.|......... ....-.+.||++-||+.+--....- ........|||||.|.+... ..
T Consensus 289 glkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-----------~~lgdiGtVVIDEiHtL~deERG~ 357 (830)
T COG1202 289 GLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-----------KDLGDIGTVVIDEIHTLEDEERGP 357 (830)
T ss_pred cceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-----------CcccccceEEeeeeeeccchhccc
Confidence 233333344332211110 0111235799999999764333221 12345789999999999652 22
Q ss_pred HH---hHHhhcC-CcccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHH
Q 001731 453 QR---AKSLLEI-PSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAK 528 (1019)
Q Consensus 453 ~~---~kal~~l-~~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~ 528 (1019)
.. ...++.+ +....|.||||- .|+.|+...+..-
T Consensus 358 RLdGLI~RLr~l~~~AQ~i~LSATV--gNp~elA~~l~a~---------------------------------------- 395 (830)
T COG1202 358 RLDGLIGRLRYLFPGAQFIYLSATV--GNPEELAKKLGAK---------------------------------------- 395 (830)
T ss_pred chhhHHHHHHHhCCCCeEEEEEeec--CChHHHHHHhCCe----------------------------------------
Confidence 22 2223333 556778899995 5677776554320
Q ss_pred HHHHHhHHHHHHhhhhcccccCccccccccC-ccceEEEEEcCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhc
Q 001731 529 ELRERIQPYFLRRLKNEVFHEDDVTSSATLS-KKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICD 607 (1019)
Q Consensus 529 ~L~~~i~p~~lRR~k~dv~~~~~~~~~~~LP-~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~ 607 (1019)
-|..+ .-| +...+.++|+-.
T Consensus 396 ----------------lV~y~-------~RPVplErHlvf~~~e------------------------------------ 416 (830)
T COG1202 396 ----------------LVLYD-------ERPVPLERHLVFARNE------------------------------------ 416 (830)
T ss_pred ----------------eEeec-------CCCCChhHeeeeecCc------------------------------------
Confidence 00000 011 223333444311
Q ss_pred ChhhhhhhhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhcc----C--CCcee
Q 001731 608 HPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIP----E--GHNVL 681 (1019)
Q Consensus 608 hP~ll~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~----~--g~KvL 681 (1019)
+.|+..+.+|++.-.. . ...+|
T Consensus 417 ----------------------------------------------------~eK~~ii~~L~k~E~~~~sskg~rGQtI 444 (830)
T COG1202 417 ----------------------------------------------------SEKWDIIARLVKREFSTESSKGYRGQTI 444 (830)
T ss_pred ----------------------------------------------------hHHHHHHHHHHHHHHhhhhccCcCCceE
Confidence 2234444444332211 1 24599
Q ss_pred EecccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEE----cCCC
Q 001731 682 IFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIV----VDPA 757 (1019)
Q Consensus 682 IFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi----~D~~ 757 (1019)
||+.++.-...|+.+|..+|++..-||++++..+|+.+-..|.++.-. .++||.|.|.|+|+++. .||+ +...
T Consensus 445 VFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~--~VVTTAAL~AGVDFPAS-QVIFEsLaMG~~ 521 (830)
T COG1202 445 VFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELA--AVVTTAALAAGVDFPAS-QVIFESLAMGIE 521 (830)
T ss_pred EEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcc--eEeehhhhhcCCCCchH-HHHHHHHHcccc
Confidence 999999999999999999999999999999999999999999999866 88999999999999954 4554 4555
Q ss_pred C-CchhhhhhhhhhhhhCCCCcEEEEEEeeCC
Q 001731 758 W-NPSTDNQSVDRAYRIGQKKDVVVYRLMTCG 788 (1019)
Q Consensus 758 W-Np~~~~QaiGRa~RiGQ~k~V~VyrLit~g 788 (1019)
| +|..+.|..|||+|.|=.-.-.||-++-.|
T Consensus 522 WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 522 WLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred cCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 6 999999999999999877767788887665
No 96
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.68 E-value=1.5e-15 Score=164.46 Aligned_cols=121 Identities=21% Similarity=0.311 Sum_probs=103.2
Q ss_pred hHHHHHHHHHhhccCCCceeEecccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCccc
Q 001731 662 KISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGL 741 (1019)
Q Consensus 662 Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~ 741 (1019)
|+++|..+..-+ . =...||||+.+.++.+|...|...|+.+..++|.+...+|.+++++|+.+... +|++|.++++
T Consensus 317 K~~~l~~lyg~~-t-igqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~k--VLitTnV~AR 392 (477)
T KOG0332|consen 317 KYQALVNLYGLL-T-IGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEK--VLITTNVCAR 392 (477)
T ss_pred HHHHHHHHHhhh-h-hhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcce--EEEEechhhc
Confidence 666666643322 1 23479999999999999999999999999999999999999999999999866 9999999999
Q ss_pred ccCcccCCEEEEcCCCC------CchhhhhhhhhhhhhCCCCcEEEEEEeeCC
Q 001731 742 GLTLTKADRVIVVDPAW------NPSTDNQSVDRAYRIGQKKDVVVYRLMTCG 788 (1019)
Q Consensus 742 GLNLt~A~~VIi~D~~W------Np~~~~QaiGRa~RiGQ~k~V~VyrLit~g 788 (1019)
||+...++.||+||.|- .+.+|.+|+||++|.|.+-- .+.|+-.+
T Consensus 393 GiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~--a~n~v~~~ 443 (477)
T KOG0332|consen 393 GIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGL--AINLVDDK 443 (477)
T ss_pred ccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccce--EEEeeccc
Confidence 99999999999999995 67899999999999997653 33355444
No 97
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.68 E-value=1.2e-16 Score=172.71 Aligned_cols=128 Identities=23% Similarity=0.333 Sum_probs=110.4
Q ss_pred hhhHHHHHHHHHhhccCCCceeEecccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCc
Q 001731 660 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVG 739 (1019)
Q Consensus 660 S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~ag 739 (1019)
-.|+..|++.|++ ..-+||||+.-..-.+.|.++|-..|+..+.|||+..+++|...|..|+.++.. +|++|+++
T Consensus 407 EaKiVylLeCLQK---T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKD--VLVATDVA 481 (610)
T KOG0341|consen 407 EAKIVYLLECLQK---TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKD--VLVATDVA 481 (610)
T ss_pred hhhhhhHHHHhcc---CCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCc--eEEEecch
Confidence 4477777777665 566799999999999999999999999999999999999999999999999865 99999999
Q ss_pred ccccCcccCCEEEEcCCCCCchhhhhhhhhhhhhCCCCcEEEEEEeeCCCHHHHH
Q 001731 740 GLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKI 794 (1019)
Q Consensus 740 g~GLNLt~A~~VIi~D~~WNp~~~~QaiGRa~RiGQ~k~V~VyrLit~gTiEEkI 794 (1019)
+-||++++..|||+||-|-.-..|.+|+||++|-|.+--.+ .|+.+++-+..+
T Consensus 482 SKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiAT--TfINK~~~esvL 534 (610)
T KOG0341|consen 482 SKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIAT--TFINKNQEESVL 534 (610)
T ss_pred hccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceee--eeecccchHHHH
Confidence 99999999999999999999999999999999999876432 345555444433
No 98
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.68 E-value=2.3e-16 Score=153.50 Aligned_cols=120 Identities=32% Similarity=0.541 Sum_probs=111.9
Q ss_pred hhHHHHHHHHHhhccCCCceeEecccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcc
Q 001731 661 CKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGG 740 (1019)
Q Consensus 661 ~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg 740 (1019)
.|...+..++......+.++|||+.+...++.+...|...+.++..++|+++..+|..+++.|+.+. ..+|++|.+++
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~--~~ili~t~~~~ 89 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGE--IVVLVATDVIA 89 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCC--CcEEEEcChhh
Confidence 6899999999988777899999999999999999999988999999999999999999999999987 44888999999
Q ss_pred cccCcccCCEEEEcCCCCCchhhhhhhhhhhhhCCCCcEEEE
Q 001731 741 LGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVY 782 (1019)
Q Consensus 741 ~GLNLt~A~~VIi~D~~WNp~~~~QaiGRa~RiGQ~k~V~Vy 782 (1019)
+|+|++.+++||+++++|++..+.|++||++|.||+..|++|
T Consensus 90 ~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 90 RGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 999999999999999999999999999999999998877664
No 99
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.68 E-value=1.5e-15 Score=186.94 Aligned_cols=311 Identities=18% Similarity=0.124 Sum_probs=197.7
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCc-ccHHHHHHHHHHh-cCCCcE
Q 001731 303 MLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK-TLLSHWIKELTAV-GLSAKI 380 (1019)
Q Consensus 303 ~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~-sLl~qW~~E~~k~-~~~~~v 380 (1019)
.|+|+|.++|.-.+. .+.+.|++.+||+|||+.|...+..-...+ .++++.|||. +|..+-..+|.+| ..+.++
T Consensus 31 el~~~qq~av~~~~~---~~~N~li~aPTgsGKTlIA~lai~~~l~~~-~~k~vYivPlkALa~Ek~~~~~~~~~~GirV 106 (766)
T COG1204 31 ELFNPQQEAVEKGLL---SDENVLISAPTGSGKTLIALLAILSTLLEG-GGKVVYIVPLKALAEEKYEEFSRLEELGIRV 106 (766)
T ss_pred HhhHHHHHHhhcccc---CCCcEEEEcCCCCchHHHHHHHHHHHHHhc-CCcEEEEeChHHHHHHHHHHhhhHHhcCCEE
Confidence 699999999965544 278999999999999998776555444333 4799999998 7778888888854 345677
Q ss_pred EEEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcc------hHH
Q 001731 381 REYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPS------TQR 454 (1019)
Q Consensus 381 ~~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~------s~~ 454 (1019)
..+.|....... ....++|+|+||+.+-........ -....++||+||+|.+.... +-.
T Consensus 107 ~~~TgD~~~~~~-----~l~~~~ViVtT~EK~Dsl~R~~~~----------~~~~V~lvViDEiH~l~d~~RG~~lE~iv 171 (766)
T COG1204 107 GISTGDYDLDDE-----RLARYDVIVTTPEKLDSLTRKRPS----------WIEEVDLVVIDEIHLLGDRTRGPVLESIV 171 (766)
T ss_pred EEecCCcccchh-----hhccCCEEEEchHHhhHhhhcCcc----------hhhcccEEEEeeeeecCCcccCceehhHH
Confidence 777776554332 346799999999987543332211 12346899999999996541 122
Q ss_pred hHHhhcCCcccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHHHHh
Q 001731 455 AKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERI 534 (1019)
Q Consensus 455 ~kal~~l~~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~~L~~~i 534 (1019)
++....-..-+.++||||- .|..|+...++-- +..+.-.|..
T Consensus 172 ~r~~~~~~~~rivgLSATl--pN~~evA~wL~a~---~~~~~~rp~~--------------------------------- 213 (766)
T COG1204 172 ARMRRLNELIRIVGLSATL--PNAEEVADWLNAK---LVESDWRPVP--------------------------------- 213 (766)
T ss_pred HHHHhhCcceEEEEEeeec--CCHHHHHHHhCCc---ccccCCCCcc---------------------------------
Confidence 2222222334668899995 4677766555421 1100000000
Q ss_pred HHHHHHhhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcChhhhhh
Q 001731 535 QPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLTK 614 (1019)
Q Consensus 535 ~p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~ll~~ 614 (1019)
++| ..|. .....+..-...
T Consensus 214 ----l~~---------------~v~~-~~~~~~~~~~~k----------------------------------------- 232 (766)
T COG1204 214 ----LRR---------------GVPY-VGAFLGADGKKK----------------------------------------- 232 (766)
T ss_pred ----ccc---------------CCcc-ceEEEEecCccc-----------------------------------------
Confidence 000 0000 000000000000
Q ss_pred hhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhccCCCceeEecccHHHHHHHH
Q 001731 615 RAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQ 694 (1019)
Q Consensus 615 ~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~ 694 (1019)
.....+...+..++....+.|+.+|||++++......+
T Consensus 233 ------------------------------------------~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A 270 (766)
T COG1204 233 ------------------------------------------TWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTA 270 (766)
T ss_pred ------------------------------------------cccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHH
Confidence 00111233445555566667888999999887665555
Q ss_pred HHHhh----c---------------------------------CCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecC
Q 001731 695 ESIGS----K---------------------------------GYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQ 737 (1019)
Q Consensus 695 ~~L~~----~---------------------------------gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~ 737 (1019)
+.|.. . -..+..-|.+++.++|+-+-+.|+.+... +|++|.
T Consensus 271 ~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ik--Vlv~Tp 348 (766)
T COG1204 271 KKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIK--VLVSTP 348 (766)
T ss_pred HHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCce--EEEech
Confidence 55541 0 01255678899999999999999999866 899999
Q ss_pred CcccccCcccCCEEE----EcC-----CCCCchhhhhhhhhhhhhCC
Q 001731 738 VGGLGLTLTKADRVI----VVD-----PAWNPSTDNQSVDRAYRIGQ 775 (1019)
Q Consensus 738 agg~GLNLt~A~~VI----i~D-----~~WNp~~~~QaiGRa~RiGQ 775 (1019)
..+.|+||++-..|| .|| -+-++..+.|..|||+|.|=
T Consensus 349 TLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~ 395 (766)
T COG1204 349 TLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGY 395 (766)
T ss_pred HHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCc
Confidence 999999999654443 255 33467889999999999884
No 100
>COG4889 Predicted helicase [General function prediction only]
Probab=99.68 E-value=1.8e-16 Score=184.92 Aligned_cols=167 Identities=24% Similarity=0.231 Sum_probs=107.6
Q ss_pred ccccCccccCCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCc-ccHHHHHHHH
Q 001731 293 TYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK-TLLSHWIKEL 371 (1019)
Q Consensus 293 ~~~lp~~i~~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~-sLl~qW~~E~ 371 (1019)
...+|..-..+|||||.+++....+.+..+..|=|-+.+|+|||++++-+...+.. .++|.+||. +|+.|-.+|.
T Consensus 151 ~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~----~~iL~LvPSIsLLsQTlrew 226 (1518)
T COG4889 151 QDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAA----ARILFLVPSISLLSQTLREW 226 (1518)
T ss_pred ccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhh----hheEeecchHHHHHHHHHHH
Confidence 44567777788999999999999998888888989999999999999988877744 689999998 8888865554
Q ss_pred HHh----------cCCCcEEEE----c----ccccchhhHH-HH-----HhhhCCCEEEecHHHHHhccccccCCCcccC
Q 001731 372 TAV----------GLSAKIREY----F----GTCVKTRQYE-LQ-----YVLQDKGVLLTTYDIVRNNSKSLRGSSFISD 427 (1019)
Q Consensus 372 ~k~----------~~~~~v~~~----~----g~~~~~~~~~-~~-----~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~ 427 (1019)
..- |.+.++... . +.....+... +. .....--||++||+.+-.-...-.
T Consensus 227 ~~~~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe------- 299 (1518)
T COG4889 227 TAQKELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQE------- 299 (1518)
T ss_pred hhccCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHH-------
Confidence 321 111111100 0 0000000001 11 111233589999998754322111
Q ss_pred cCCCCCCCccEEEEcCCcccCCcc------hHH--hHHhhcCCcccEEEeecCC
Q 001731 428 EAGDDDAIWDYMILDEGHLIKNPS------TQR--AKSLLEIPSAHRIIISGTP 473 (1019)
Q Consensus 428 ~~~~~~~~wd~VIlDEAH~iKN~~------s~~--~kal~~l~~~~RllLTGTP 473 (1019)
.....||+|||||||+--... +.. ...-..+++..|+-|||||
T Consensus 300 ---~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATP 350 (1518)
T COG4889 300 ---AGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATP 350 (1518)
T ss_pred ---cCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCc
Confidence 134568999999999963311 111 1122346788899999999
No 101
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.68 E-value=7.9e-15 Score=178.90 Aligned_cols=121 Identities=16% Similarity=0.155 Sum_probs=110.6
Q ss_pred hhhhHHHHHHHHHhhccCCCceeEecccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCC
Q 001731 659 ISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQV 738 (1019)
Q Consensus 659 ~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~a 738 (1019)
...|+.++++.+.++...|..|||||.++...+.|...|...|+++..++|.+...+|+.+.+.|+.|. ++|+|..
T Consensus 426 ~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~----VtIATNm 501 (896)
T PRK13104 426 QADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA----VTIATNM 501 (896)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc----EEEeccC
Confidence 456999999999999999999999999999999999999999999999999999999999999999985 8999999
Q ss_pred cccccCcc--------------------------------------cCCEEEEcCCCCCchhhhhhhhhhhhhCCCCcEE
Q 001731 739 GGLGLTLT--------------------------------------KADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVV 780 (1019)
Q Consensus 739 gg~GLNLt--------------------------------------~A~~VIi~D~~WNp~~~~QaiGRa~RiGQ~k~V~ 780 (1019)
+|+|+|+. +.=+||.-..+-|-..+.|-.||++|.|..-...
T Consensus 502 AGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~ 581 (896)
T PRK13104 502 AGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSR 581 (896)
T ss_pred ccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceE
Confidence 99999974 3458999999999999999999999999987765
Q ss_pred EEE
Q 001731 781 VYR 783 (1019)
Q Consensus 781 Vyr 783 (1019)
.|-
T Consensus 582 f~l 584 (896)
T PRK13104 582 FYL 584 (896)
T ss_pred EEE
Confidence 543
No 102
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.67 E-value=1.8e-16 Score=163.56 Aligned_cols=165 Identities=22% Similarity=0.277 Sum_probs=110.2
Q ss_pred CCchHHHHHHHHHHHhhcC---CCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCc-ccHHHHHHHHHHhcCCC
Q 001731 303 MLFPHQREGLRWLWSLHCQ---GKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK-TLLSHWIKELTAVGLSA 378 (1019)
Q Consensus 303 ~L~phQ~egV~~L~~~~~~---~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~-sLl~qW~~E~~k~~~~~ 378 (1019)
+|+|||.+++.-++..+.. .+.++|..+||+|||++++.++..+.. ++|||||. +++.||..+|..+....
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~-----~~l~~~p~~~l~~Q~~~~~~~~~~~~ 77 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR-----KVLIVAPNISLLEQWYDEFDDFGSEK 77 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC-----EEEEEESSHHHHHHHHHHHHHHSTTS
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc-----ceeEecCHHHHHHHHHHHHHHhhhhh
Confidence 5899999999999876654 478899999999999999988887765 89999998 78899999998776654
Q ss_pred cEEEEccc-----------ccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCC-cccCcCCCCCCCccEEEEcCCcc
Q 001731 379 KIREYFGT-----------CVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSS-FISDEAGDDDAIWDYMILDEGHL 446 (1019)
Q Consensus 379 ~v~~~~g~-----------~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~-~~~~~~~~~~~~wd~VIlDEAH~ 446 (1019)
........ ................+++++|++.+........... ............+++||+||||+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~ 157 (184)
T PF04851_consen 78 YNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHH 157 (184)
T ss_dssp EEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGC
T ss_pred hhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhh
Confidence 43321110 0001111122234567899999999976654321100 00000111234579999999999
Q ss_pred cCCcchHHhHHhhcCCcccEEEeecCCC
Q 001731 447 IKNPSTQRAKSLLEIPSAHRIIISGTPI 474 (1019)
Q Consensus 447 iKN~~s~~~kal~~l~~~~RllLTGTPi 474 (1019)
+.+... ++.+..++..++|+|||||.
T Consensus 158 ~~~~~~--~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 158 YPSDSS--YREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp THHHHH--HHHHHHSSCCEEEEEESS-S
T ss_pred cCCHHH--HHHHHcCCCCeEEEEEeCcc
Confidence 854332 66666688999999999994
No 103
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.66 E-value=4.4e-15 Score=184.99 Aligned_cols=110 Identities=17% Similarity=0.241 Sum_probs=93.8
Q ss_pred CCCceeEecccHHHHHHHHHHHhh---cCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEE
Q 001731 676 EGHNVLIFSQTRKMLNLIQESIGS---KGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVI 752 (1019)
Q Consensus 676 ~g~KvLIFsq~~~~ldiL~~~L~~---~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VI 752 (1019)
.+..+|||+.....++.+...|.. .++.++.+||+++..+|.+++..|..+.. -+|++|.++.+||++.++++||
T Consensus 211 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~r--kVlvATnIAErsLtIp~V~~VI 288 (812)
T PRK11664 211 ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRR--KVVLATNIAETSLTIEGIRLVV 288 (812)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCe--EEEEecchHHhcccccCceEEE
Confidence 357899999999999999999986 57889999999999999999999988764 4899999999999999999999
Q ss_pred EcCCC----CCc--------------hhhhhhhhhhhhhCCCCcEEEEEEeeCCCH
Q 001731 753 VVDPA----WNP--------------STDNQSVDRAYRIGQKKDVVVYRLMTCGTV 790 (1019)
Q Consensus 753 i~D~~----WNp--------------~~~~QaiGRa~RiGQ~k~V~VyrLit~gTi 790 (1019)
.++.+ |+| +.+.||.||++|. .+-.+|+|+++...
T Consensus 289 D~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~~~ 341 (812)
T PRK11664 289 DSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKEQA 341 (812)
T ss_pred ECCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHHHH
Confidence 97655 222 3588999998886 47889999987543
No 104
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.66 E-value=1.7e-15 Score=166.98 Aligned_cols=311 Identities=15% Similarity=0.156 Sum_probs=197.3
Q ss_pred hHHHHHHHHHHHhhcCCCceEEEcCCCchHHHH-HHHHHHHHhhcCC------CCeEEEEeCcc-cHHHHHHHHHH---h
Q 001731 306 PHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQ-ICGFLAGLFHSRL------IKRALVVAPKT-LLSHWIKELTA---V 374 (1019)
Q Consensus 306 phQ~egV~~L~~~~~~~~GgILaDemGLGKTlq-aIali~~l~~~~~------~~~~LIVvP~s-Ll~qW~~E~~k---~ 374 (1019)
-.|..+|..+++ |+..+.-.-||+|||.+ +|.++..++.... ....+|+||+. |..|....+.+ +
T Consensus 44 lIQs~aIplaLE----gKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~ 119 (569)
T KOG0346|consen 44 LIQSSAIPLALE----GKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEY 119 (569)
T ss_pred hhhhcccchhhc----CcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHHH
Confidence 357788877777 77666667999999998 5666666654322 23689999994 56777777665 3
Q ss_pred cC-CCcEEEEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcchH
Q 001731 375 GL-SAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQ 453 (1019)
Q Consensus 375 ~~-~~~v~~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s~ 453 (1019)
|+ ..++..... ...............+||++|+..+..+...-.. .......++|+|||..+...+-.
T Consensus 120 c~k~lr~~nl~s--~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~---------~~~~~l~~LVvDEADLllsfGYe 188 (569)
T KOG0346|consen 120 CSKDLRAINLAS--SMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVL---------EYLDSLSFLVVDEADLLLSFGYE 188 (569)
T ss_pred HHHhhhhhhhhc--ccchHHHHHHHccCCCeEEeChHHHHHHHhhccc---------hhhhheeeEEechhhhhhhcccH
Confidence 44 222222211 1111111123445689999999988766543221 12334689999999998654422
Q ss_pred --HhHHhhcCCcc-cEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHH
Q 001731 454 --RAKSLLEIPSA-HRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKEL 530 (1019)
Q Consensus 454 --~~kal~~l~~~-~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~~L 530 (1019)
.-+....++.. ..++||||-- .|+..|=.+++.
T Consensus 189 edlk~l~~~LPr~~Q~~LmSATl~----dDv~~LKkL~l~---------------------------------------- 224 (569)
T KOG0346|consen 189 EDLKKLRSHLPRIYQCFLMSATLS----DDVQALKKLFLH---------------------------------------- 224 (569)
T ss_pred HHHHHHHHhCCchhhheeehhhhh----hHHHHHHHHhcc----------------------------------------
Confidence 23333344432 3477888852 122222111111
Q ss_pred HHHhHHHHHHhhhhcccccCccccccccC---ccceEEEEEcCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhc
Q 001731 531 RERIQPYFLRRLKNEVFHEDDVTSSATLS---KKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICD 607 (1019)
Q Consensus 531 ~~~i~p~~lRR~k~dv~~~~~~~~~~~LP---~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~ 607 (1019)
.|+++.-+.. .+| ....+.|.|. +.
T Consensus 225 ----nPviLkl~e~------------el~~~dqL~Qy~v~cs--e~---------------------------------- 252 (569)
T KOG0346|consen 225 ----NPVILKLTEG------------ELPNPDQLTQYQVKCS--EE---------------------------------- 252 (569)
T ss_pred ----CCeEEEeccc------------cCCCcccceEEEEEec--cc----------------------------------
Confidence 1222111111 122 1122233332 11
Q ss_pred ChhhhhhhhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhccCCCceeEecccH
Q 001731 608 HPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTR 687 (1019)
Q Consensus 608 hP~ll~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~ 687 (1019)
-|+..|..+|+--. -..|.|||.+..
T Consensus 253 -----------------------------------------------------DKflllyallKL~L-I~gKsliFVNtI 278 (569)
T KOG0346|consen 253 -----------------------------------------------------DKFLLLYALLKLRL-IRGKSLIFVNTI 278 (569)
T ss_pred -----------------------------------------------------hhHHHHHHHHHHHH-hcCceEEEEech
Confidence 13333333332111 134799999999
Q ss_pred HHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecC------------------------------
Q 001731 688 KMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQ------------------------------ 737 (1019)
Q Consensus 688 ~~ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~------------------------------ 737 (1019)
...-.|.-+|+.-|++.+.++|.++...|.-++++||.|-.. +||+|+
T Consensus 279 dr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~Yd--ivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK 356 (569)
T KOG0346|consen 279 DRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYD--IVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKK 356 (569)
T ss_pred hhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCccee--EEEEccCccchhhhhccccccccccCCCCccccccc
Confidence 999999999999999999999999999999999999998744 666666
Q ss_pred -----CcccccCcccCCEEEEcCCCCCchhhhhhhhhhhhhCCCCcEEEEE
Q 001731 738 -----VGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYR 783 (1019)
Q Consensus 738 -----agg~GLNLt~A~~VIi~D~~WNp~~~~QaiGRa~RiGQ~k~V~Vyr 783 (1019)
-.++|||+..+++||+||.|-++..|++|+||+.|-|.+-.+..|.
T Consensus 357 ~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv 407 (569)
T KOG0346|consen 357 LDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFV 407 (569)
T ss_pred cCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEe
Confidence 1247999999999999999999999999999999988877655443
No 105
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.66 E-value=3.1e-15 Score=181.02 Aligned_cols=123 Identities=22% Similarity=0.303 Sum_probs=111.5
Q ss_pred hhhHHHHHHHHHhhccCCCceeEecccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCc
Q 001731 660 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVG 739 (1019)
Q Consensus 660 S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~ag 739 (1019)
+.|+..|.+||..+.+ ..++|||++.-.-++.|.+.|...||.+..+||+.++.+|...+.+|+++... +|++|.+.
T Consensus 597 ~eKf~kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~--LLvaTsvv 673 (997)
T KOG0334|consen 597 NEKFLKLLELLGERYE-DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVN--LLVATSVV 673 (997)
T ss_pred hHHHHHHHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCce--EEEehhhh
Confidence 5588888999988776 66899999999999999999999999999999999999999999999999865 99999999
Q ss_pred ccccCcccCCEEEEcCCCCCchhhhhhhhhhhhhCCCCcEEEEEEeeC
Q 001731 740 GLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTC 787 (1019)
Q Consensus 740 g~GLNLt~A~~VIi~D~~WNp~~~~QaiGRa~RiGQ~k~V~VyrLit~ 787 (1019)
+.||+......||+||.|--...|.+|.||++|.|.+- ..|.|+..
T Consensus 674 arGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg--~AvtFi~p 719 (997)
T KOG0334|consen 674 ARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKG--AAVTFITP 719 (997)
T ss_pred hcccccccceEEEEcccchhHHHHHHHhcccccCCccc--eeEEEeCh
Confidence 99999999999999999999999999999999999887 44555555
No 106
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.66 E-value=1.2e-14 Score=176.52 Aligned_cols=119 Identities=17% Similarity=0.216 Sum_probs=106.2
Q ss_pred hhhhHHHHHHHHHhhccCCCceeEecccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCC
Q 001731 659 ISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQV 738 (1019)
Q Consensus 659 ~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~a 738 (1019)
...|+.+|.+.+......|..|||||.++...+.|...|...|+++..++|.+...++.-+...++.+. ++|+|..
T Consensus 422 ~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~----VtIATnm 497 (796)
T PRK12906 422 LDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA----VTIATNM 497 (796)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce----EEEEecc
Confidence 355899999999888889999999999999999999999999999999999988777777777776665 8999999
Q ss_pred cccccCcc---cCC-----EEEEcCCCCCchhhhhhhhhhhhhCCCCcEEE
Q 001731 739 GGLGLTLT---KAD-----RVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVV 781 (1019)
Q Consensus 739 gg~GLNLt---~A~-----~VIi~D~~WNp~~~~QaiGRa~RiGQ~k~V~V 781 (1019)
+|+|+|+. .+. +||.++.|-|...+.|++||++|.|..-....
T Consensus 498 AGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~ 548 (796)
T PRK12906 498 AGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRF 548 (796)
T ss_pred ccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEE
Confidence 99999994 677 99999999999999999999999999876643
No 107
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.65 E-value=2.4e-14 Score=170.65 Aligned_cols=94 Identities=22% Similarity=0.323 Sum_probs=75.7
Q ss_pred HHHHHHHHhhc--CCeEEEEECCCCHHHH--HHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCCC--CC-c--
Q 001731 690 LNLIQESIGSK--GYKFLRIDGTTKASDR--VKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPA--WN-P-- 760 (1019)
Q Consensus 690 ldiL~~~L~~~--gi~~~ridG~~s~~eR--~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~--WN-p-- 760 (1019)
.+.+++.|... +.++.++|+.++..++ .++++.|.+++.. +|++|+..+.|+|++.++.|+++|.+ .+ |
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~--ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ 348 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKAD--ILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDF 348 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCC--EEEeCcccccCCCCCcccEEEEEcCcccccCccc
Confidence 46777777765 7899999999876655 8999999998755 88999999999999999999876655 22 3
Q ss_pred -------hhhhhhhhhhhhhCCCCcEEEEEEe
Q 001731 761 -------STDNQSVDRAYRIGQKKDVVVYRLM 785 (1019)
Q Consensus 761 -------~~~~QaiGRa~RiGQ~k~V~VyrLi 785 (1019)
+.+.|+.||++|.+....|.+..+-
T Consensus 349 ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~ 380 (505)
T TIGR00595 349 RAAERGFQLLTQVAGRAGRAEDPGQVIIQTYN 380 (505)
T ss_pred chHHHHHHHHHHHHhccCCCCCCCEEEEEeCC
Confidence 5789999999998877777554333
No 108
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.64 E-value=4.5e-14 Score=174.11 Aligned_cols=311 Identities=17% Similarity=0.181 Sum_probs=205.5
Q ss_pred ccCCCchHHHHHHHHHHHhhcCCC--ceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccH-HHHHHHHHHhcC
Q 001731 300 IGNMLFPHQREGLRWLWSLHCQGK--GGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLL-SHWIKELTAVGL 376 (1019)
Q Consensus 300 i~~~L~phQ~egV~~L~~~~~~~~--GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl-~qW~~E~~k~~~ 376 (1019)
+...-.|-|..+|.-..+-...++ .-+||-++|-|||=.|+=.+. ......+-+.|+||++++ .|..+.|+.-+.
T Consensus 591 FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAF--kAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~ 668 (1139)
T COG1197 591 FPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAF--KAVMDGKQVAVLVPTTLLAQQHYETFKERFA 668 (1139)
T ss_pred CCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHH--HHhcCCCeEEEEcccHHhHHHHHHHHHHHhc
Confidence 334456789999998877555443 459999999999987764332 222334789999999988 566777766544
Q ss_pred CCcEEEEccc---ccchhhHHHHH-hhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcch
Q 001731 377 SAKIREYFGT---CVKTRQYELQY-VLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPST 452 (1019)
Q Consensus 377 ~~~v~~~~g~---~~~~~~~~~~~-~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s 452 (1019)
+..|.+-.-+ ..+.....+.. ..+.-||||-|+..+.++.... +..+|||||=|++.=.
T Consensus 669 ~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~Fk---------------dLGLlIIDEEqRFGVk-- 731 (1139)
T COG1197 669 GFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFK---------------DLGLLIIDEEQRFGVK-- 731 (1139)
T ss_pred CCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEe---------------cCCeEEEechhhcCcc--
Confidence 4444432221 11112222222 2345799999999998776533 3589999999998432
Q ss_pred HHhHHhhcCCc-ccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHH
Q 001731 453 QRAKSLLEIPS-AHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELR 531 (1019)
Q Consensus 453 ~~~kal~~l~~-~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~~L~ 531 (1019)
.-..++.+++ .+.+-||||||...+.= +|. .++
T Consensus 732 -~KEkLK~Lr~~VDvLTLSATPIPRTL~M--sm~-------------------------------------------GiR 765 (1139)
T COG1197 732 -HKEKLKELRANVDVLTLSATPIPRTLNM--SLS-------------------------------------------GIR 765 (1139)
T ss_pred -HHHHHHHHhccCcEEEeeCCCCcchHHH--HHh-------------------------------------------cch
Confidence 2334556654 56788999999765321 000 000
Q ss_pred HHhHHHHHHhhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcChhh
Q 001731 532 ERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLL 611 (1019)
Q Consensus 532 ~~i~p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~l 611 (1019)
++ . ....||.....|..-..+..-.+.+..
T Consensus 766 dl-----------S---------vI~TPP~~R~pV~T~V~~~d~~~ireA------------------------------ 795 (1139)
T COG1197 766 DL-----------S---------VIATPPEDRLPVKTFVSEYDDLLIREA------------------------------ 795 (1139)
T ss_pred hh-----------h---------hccCCCCCCcceEEEEecCChHHHHHH------------------------------
Confidence 00 0 112344444433332222211111111
Q ss_pred hhhhhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhccCCCceeEecccHHHHH
Q 001731 612 LTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLN 691 (1019)
Q Consensus 612 l~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ld 691 (1019)
+++++ ..|..|-.-.+.+..+.
T Consensus 796 ---------------------------------------------------------I~REl-~RgGQvfYv~NrV~~Ie 817 (1139)
T COG1197 796 ---------------------------------------------------------ILREL-LRGGQVFYVHNRVESIE 817 (1139)
T ss_pred ---------------------------------------------------------HHHHH-hcCCEEEEEecchhhHH
Confidence 11222 25667777778888899
Q ss_pred HHHHHHhhc--CCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCCC-CCchhhhhhhh
Q 001731 692 LIQESIGSK--GYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPA-WNPSTDNQSVD 768 (1019)
Q Consensus 692 iL~~~L~~~--gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~-WNp~~~~QaiG 768 (1019)
.+...|... ..++++.||.|+..+-++++..|.++.-. +|+||-....|||++.||++|+-+.+ +--+...|-.|
T Consensus 818 ~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~d--VLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRG 895 (1139)
T COG1197 818 KKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYD--VLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRG 895 (1139)
T ss_pred HHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCC--EEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhcc
Confidence 999988875 56789999999999999999999999855 88888999999999999999998776 57899999999
Q ss_pred hhhhhCCCCcEEEEEEeeC
Q 001731 769 RAYRIGQKKDVVVYRLMTC 787 (1019)
Q Consensus 769 Ra~RiGQ~k~V~VyrLit~ 787 (1019)
|++|-. +..+.|.|+..
T Consensus 896 RVGRS~--~~AYAYfl~p~ 912 (1139)
T COG1197 896 RVGRSN--KQAYAYFLYPP 912 (1139)
T ss_pred ccCCcc--ceEEEEEeecC
Confidence 999943 34566767664
No 109
>PRK09694 helicase Cas3; Provisional
Probab=99.64 E-value=3.3e-14 Score=176.95 Aligned_cols=100 Identities=17% Similarity=0.161 Sum_probs=83.4
Q ss_pred ccCCCceeEecccHHHHHHHHHHHhhcC---CeEEEEECCCCHHHH----HHHHHhh-hcCCC-ccEEEEecCCcccccC
Q 001731 674 IPEGHNVLIFSQTRKMLNLIQESIGSKG---YKFLRIDGTTKASDR----VKIVNDF-QEGDV-APIFLLTSQVGGLGLT 744 (1019)
Q Consensus 674 ~~~g~KvLIFsq~~~~ldiL~~~L~~~g---i~~~ridG~~s~~eR----~~ii~~F-~~~~~-~~V~LlST~agg~GLN 744 (1019)
...|+++|||++.+..+..+...|...+ +++..+||.++..+| +++++.| +++.. ...+||+|++...|||
T Consensus 557 ~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLD 636 (878)
T PRK09694 557 ANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLD 636 (878)
T ss_pred HhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheee
Confidence 3468899999999999999999998764 689999999999999 4678889 44432 1368999999999999
Q ss_pred cccCCEEEEcCCCCCchhhhhhhhhhhhhCCC
Q 001731 745 LTKADRVIVVDPAWNPSTDNQSVDRAYRIGQK 776 (1019)
Q Consensus 745 Lt~A~~VIi~D~~WNp~~~~QaiGRa~RiGQ~ 776 (1019)
+ .++.+|....| ...++||+||++|.|..
T Consensus 637 I-d~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 637 L-DFDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred c-CCCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 9 57888886665 56899999999999874
No 110
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.62 E-value=2.7e-13 Score=165.15 Aligned_cols=120 Identities=14% Similarity=0.153 Sum_probs=110.0
Q ss_pred hhhhHHHHHHHHHhhccCCCceeEecccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCC
Q 001731 659 ISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQV 738 (1019)
Q Consensus 659 ~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~a 738 (1019)
...|+.++++-+.++.+.|..|||||.+....+.|...|...|+++..+++..+..+|..+...|+.|. ++|+|..
T Consensus 431 ~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~----VtIATnm 506 (908)
T PRK13107 431 ADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA----VTIATNM 506 (908)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc----EEEecCC
Confidence 466999999999999999999999999999999999999999999999999999999999999999887 8999999
Q ss_pred cccccCcc-------------------------------------cCCEEEEcCCCCCchhhhhhhhhhhhhCCCCcEEE
Q 001731 739 GGLGLTLT-------------------------------------KADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVV 781 (1019)
Q Consensus 739 gg~GLNLt-------------------------------------~A~~VIi~D~~WNp~~~~QaiGRa~RiGQ~k~V~V 781 (1019)
+|+|+|+. +.=+||.-..+-|-..+.|..||++|.|..-....
T Consensus 507 AGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f 586 (908)
T PRK13107 507 AGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRF 586 (908)
T ss_pred cCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeE
Confidence 99999974 45689999999999999999999999999876554
Q ss_pred E
Q 001731 782 Y 782 (1019)
Q Consensus 782 y 782 (1019)
|
T Consensus 587 ~ 587 (908)
T PRK13107 587 Y 587 (908)
T ss_pred E
Confidence 4
No 111
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.62 E-value=7.1e-14 Score=170.60 Aligned_cols=120 Identities=16% Similarity=0.157 Sum_probs=108.3
Q ss_pred hhhhHHHHHHHHHhhccCCCceeEecccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCC
Q 001731 659 ISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQV 738 (1019)
Q Consensus 659 ~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~a 738 (1019)
...|+.++.+.+.++...|..|||||.++...+.|...|...|+++..++|. ..+|.+.+..|..++.. ++|+|..
T Consensus 412 ~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~--VtIATNm 487 (830)
T PRK12904 412 EKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGA--VTIATNM 487 (830)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCce--EEEeccc
Confidence 3569999999999888899999999999999999999999999999999995 67999999999988866 9999999
Q ss_pred cccccCcc--------------------------------------cCCEEEEcCCCCCchhhhhhhhhhhhhCCCCcEE
Q 001731 739 GGLGLTLT--------------------------------------KADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVV 780 (1019)
Q Consensus 739 gg~GLNLt--------------------------------------~A~~VIi~D~~WNp~~~~QaiGRa~RiGQ~k~V~ 780 (1019)
+|+|+|+. +.=+||.-..+-|-..+.|..||++|.|..-...
T Consensus 488 AGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~ 567 (830)
T PRK12904 488 AGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSR 567 (830)
T ss_pred ccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCcee
Confidence 99999863 3568999999999999999999999999988766
Q ss_pred EE
Q 001731 781 VY 782 (1019)
Q Consensus 781 Vy 782 (1019)
.|
T Consensus 568 f~ 569 (830)
T PRK12904 568 FY 569 (830)
T ss_pred EE
Confidence 54
No 112
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.58 E-value=6.2e-13 Score=143.27 Aligned_cols=309 Identities=18% Similarity=0.243 Sum_probs=204.5
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCc-ccHHHHHHHHHHhcCCCcE
Q 001731 302 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK-TLLSHWIKELTAVGLSAKI 380 (1019)
Q Consensus 302 ~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~-sLl~qW~~E~~k~~~~~~v 380 (1019)
.+|-|+|+.+.+-+.....+....|+..-+|+|||-++...+...+..+ +++.|..|. -++-.-...++.-+++..+
T Consensus 96 G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G--~~vciASPRvDVclEl~~Rlk~aF~~~~I 173 (441)
T COG4098 96 GTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQG--GRVCIASPRVDVCLELYPRLKQAFSNCDI 173 (441)
T ss_pred cccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcC--CeEEEecCcccchHHHHHHHHHhhccCCe
Confidence 4789999999999998888888999999999999998887777776665 689999997 5666666677777777777
Q ss_pred EEEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCc-chHHhHHhh
Q 001731 381 REYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNP-STQRAKSLL 459 (1019)
Q Consensus 381 ~~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~-~s~~~kal~ 459 (1019)
...+|.+...-+ ..=||-||++.++-. ..||++|+||...+-=. +-....++.
T Consensus 174 ~~Lyg~S~~~fr--------~plvVaTtHQLlrFk------------------~aFD~liIDEVDAFP~~~d~~L~~Av~ 227 (441)
T COG4098 174 DLLYGDSDSYFR--------APLVVATTHQLLRFK------------------QAFDLLIIDEVDAFPFSDDQSLQYAVK 227 (441)
T ss_pred eeEecCCchhcc--------ccEEEEehHHHHHHH------------------hhccEEEEeccccccccCCHHHHHHHH
Confidence 777776543221 223666777777532 23899999999987221 122333443
Q ss_pred cC--CcccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHHHHhHHH
Q 001731 460 EI--PSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPY 537 (1019)
Q Consensus 460 ~l--~~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~~L~~~i~p~ 537 (1019)
.- ....+|.|||||-..-..++ ..+. +.+.
T Consensus 228 ~ark~~g~~IylTATp~k~l~r~~--------------------------~~g~----------------------~~~~ 259 (441)
T COG4098 228 KARKKEGATIYLTATPTKKLERKI--------------------------LKGN----------------------LRIL 259 (441)
T ss_pred HhhcccCceEEEecCChHHHHHHh--------------------------hhCC----------------------eeEe
Confidence 32 34567999999942100000 0000 0000
Q ss_pred -HHHhhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcChhhhhhhh
Q 001731 538 -FLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLTKRA 616 (1019)
Q Consensus 538 -~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~ll~~~~ 616 (1019)
+-+|... ..||- ...+|+.. .-+.+ .
T Consensus 260 klp~RfH~-----------~pLpv--Pkf~w~~~--~~k~l-----~--------------------------------- 286 (441)
T COG4098 260 KLPARFHG-----------KPLPV--PKFVWIGN--WNKKL-----Q--------------------------------- 286 (441)
T ss_pred ecchhhcC-----------CCCCC--CceEEecc--HHHHh-----h---------------------------------
Confidence 0111110 11221 11233321 11100 0
Q ss_pred hhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHH-HHHHHHHhhccCCCceeEecccHHHHHHHHH
Q 001731 617 AEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKIS-FILSLLDKLIPEGHNVLIFSQTRKMLNLIQE 695 (1019)
Q Consensus 617 ~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~-~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~~ 695 (1019)
-.|+. .|..+|++....|..++||.....+++.+..
T Consensus 287 -------------------------------------------r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~ 323 (441)
T COG4098 287 -------------------------------------------RNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAA 323 (441)
T ss_pred -------------------------------------------hccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHH
Confidence 01221 4567778888889999999999999999999
Q ss_pred HHhhc--CCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCCC--CCchhhhhhhhhhh
Q 001731 696 SIGSK--GYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPA--WNPSTDNQSVDRAY 771 (1019)
Q Consensus 696 ~L~~~--gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~--WNp~~~~QaiGRa~ 771 (1019)
.|+.. ...++.++... ..|.+.|.+|++|... +|++|....+|++++..+..++=.-. ++.+..+|.-||++
T Consensus 324 ~lk~~~~~~~i~~Vhs~d--~~R~EkV~~fR~G~~~--lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvG 399 (441)
T COG4098 324 ALKKKLPKETIASVHSED--QHRKEKVEAFRDGKIT--LLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVG 399 (441)
T ss_pred HHHhhCCccceeeeeccC--ccHHHHHHHHHcCceE--EEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhcc
Confidence 99543 23345555544 4799999999999865 99999999999999999998884444 89999999999999
Q ss_pred hhCCCCcEEEEEEee
Q 001731 772 RIGQKKDVVVYRLMT 786 (1019)
Q Consensus 772 RiGQ~k~V~VyrLit 786 (1019)
|--..-.-.|+.+-.
T Consensus 400 Rs~~~PtGdv~FFH~ 414 (441)
T COG4098 400 RSLERPTGDVLFFHY 414 (441)
T ss_pred CCCcCCCCcEEEEec
Confidence 965443333444443
No 113
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.57 E-value=2.6e-14 Score=157.08 Aligned_cols=319 Identities=20% Similarity=0.249 Sum_probs=209.6
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHH-HHHHHHHHhhcCC-CCeEEEEeCcc-cHHHHHHHHHHhcCCC
Q 001731 302 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQ-ICGFLAGLFHSRL-IKRALVVAPKT-LLSHWIKELTAVGLSA 378 (1019)
Q Consensus 302 ~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlq-aIali~~l~~~~~-~~~~LIVvP~s-Ll~qW~~E~~k~~~~~ 378 (1019)
....|.|+..+.-+++ ++...-..=+|+|||.. .|..+..+...-. .-++||+.|+. |..|-.+-++.++.+.
T Consensus 42 ~~ptpiqRKTipliLe----~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt 117 (529)
T KOG0337|consen 42 NTPTPIQRKTIPLILE----GRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGT 117 (529)
T ss_pred CCCCchhcccccceee----ccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhcccc
Confidence 3456788887776655 44434444799999977 3344444443322 23899999984 5566555555554433
Q ss_pred cEEE--EcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCC--cchHH
Q 001731 379 KIRE--YFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKN--PSTQR 454 (1019)
Q Consensus 379 ~v~~--~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN--~~s~~ 454 (1019)
.... .+|......+ ...+..+.|||+.|+..+.-... +..+......|||+|||.+|-. +.-+.
T Consensus 118 ~lr~s~~~ggD~~eeq--f~~l~~npDii~ATpgr~~h~~v----------em~l~l~sveyVVfdEadrlfemgfqeql 185 (529)
T KOG0337|consen 118 KLRQSLLVGGDSIEEQ--FILLNENPDIIIATPGRLLHLGV----------EMTLTLSSVEYVVFDEADRLFEMGFQEQL 185 (529)
T ss_pred chhhhhhcccchHHHH--HHHhccCCCEEEecCceeeeeeh----------heeccccceeeeeehhhhHHHhhhhHHHH
Confidence 3322 2333322222 33344578999999987643221 1112345578999999999954 44567
Q ss_pred hHHhhcCCcc-cEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHHHH
Q 001731 455 AKSLLEIPSA-HRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRER 533 (1019)
Q Consensus 455 ~kal~~l~~~-~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~~L~~~ 533 (1019)
.+.+.+++.. ..+++|||-- +. |.+|..-+..
T Consensus 186 ~e~l~rl~~~~QTllfSatlp-~~------lv~fakaGl~---------------------------------------- 218 (529)
T KOG0337|consen 186 HEILSRLPESRQTLLFSATLP-RD------LVDFAKAGLV---------------------------------------- 218 (529)
T ss_pred HHHHHhCCCcceEEEEeccCc-hh------hHHHHHccCC----------------------------------------
Confidence 7788888654 5688999941 11 1122111100
Q ss_pred hHHHHHHhhhhcccccCccccccccCccceEEEEEcCCHHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcChhhhh
Q 001731 534 IQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLT 613 (1019)
Q Consensus 534 i~p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~ll~ 613 (1019)
.|..+| ..|..+.++.-+ ++.
T Consensus 219 -~p~lVR-----------------------ldvetkise~lk--------------------------~~f--------- 239 (529)
T KOG0337|consen 219 -PPVLVR-----------------------LDVETKISELLK--------------------------VRF--------- 239 (529)
T ss_pred -CCceEE-----------------------eehhhhcchhhh--------------------------hhe---------
Confidence 000000 000001111000 000
Q ss_pred hhhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhccCCCceeEecccHHHHHHH
Q 001731 614 KRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLI 693 (1019)
Q Consensus 614 ~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL 693 (1019)
.......|..+|+.++..... .++++||+......+.+
T Consensus 240 -----------------------------------------~~~~~a~K~aaLl~il~~~~~-~~~t~vf~~tk~hve~~ 277 (529)
T KOG0337|consen 240 -----------------------------------------FRVRKAEKEAALLSILGGRIK-DKQTIVFVATKHHVEYV 277 (529)
T ss_pred -----------------------------------------eeeccHHHHHHHHHHHhcccc-ccceeEEecccchHHHH
Confidence 001123377777777776543 45799999999999999
Q ss_pred HHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCCCCCchhhhhhhhhhhhh
Q 001731 694 QESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRI 773 (1019)
Q Consensus 694 ~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QaiGRa~Ri 773 (1019)
...|...|+.+..+.|++.+..|..-+.+|+.+... +|+.|+++++|++++.-+.||+||.|-.+..+.+|+||+.|.
T Consensus 278 ~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~--~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~ara 355 (529)
T KOG0337|consen 278 RGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTS--ILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARA 355 (529)
T ss_pred HHHHHhcCCCccccccccChHhhhhccccccCCccc--eEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhc
Confidence 999999999999999999999999999999988765 899999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEEeeCC
Q 001731 774 GQKKDVVVYRLMTCG 788 (1019)
Q Consensus 774 GQ~k~V~VyrLit~g 788 (1019)
|.+- +.|-+++..
T Consensus 356 grtg--~aYs~V~~~ 368 (529)
T KOG0337|consen 356 GRTG--RAYSLVAST 368 (529)
T ss_pred cccc--eEEEEEecc
Confidence 8754 456666654
No 114
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.57 E-value=3.9e-14 Score=146.74 Aligned_cols=159 Identities=26% Similarity=0.292 Sum_probs=113.0
Q ss_pred cCCCchHHHHHHHHHHHhhcCC-CceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCc-ccHHHHHHHHHHhcCCC
Q 001731 301 GNMLFPHQREGLRWLWSLHCQG-KGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK-TLLSHWIKELTAVGLSA 378 (1019)
Q Consensus 301 ~~~L~phQ~egV~~L~~~~~~~-~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~-sLl~qW~~E~~k~~~~~ 378 (1019)
...++|||.+++.++.. . ..+++..+||+|||.+++.++.........+++||++|. .+..||..++..+++..
T Consensus 6 ~~~~~~~Q~~~~~~~~~----~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 81 (201)
T smart00487 6 FEPLRPYQKEAIEALLS----GLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSL 81 (201)
T ss_pred CCCCCHHHHHHHHHHHc----CCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 34689999999998876 4 789999999999999877777766665556799999996 77799999999887653
Q ss_pred c---EEEEcccccchhhHHHHHhhhCC-CEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCC-cchH
Q 001731 379 K---IREYFGTCVKTRQYELQYVLQDK-GVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKN-PSTQ 453 (1019)
Q Consensus 379 ~---v~~~~g~~~~~~~~~~~~~~~~~-dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN-~~s~ 453 (1019)
. ...+.+... ........... +|+++||+.+........ .....|+++|+||||.+.+ ....
T Consensus 82 ~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~----------~~~~~~~~iIiDE~h~~~~~~~~~ 148 (201)
T smart00487 82 GLKVVGLYGGDSK---REQLRKLESGKTDILVTTPGRLLDLLENDL----------LELSNVDLVILDEAHRLLDGGFGD 148 (201)
T ss_pred CeEEEEEeCCcch---HHHHHHHhcCCCCEEEeChHHHHHHHHcCC----------cCHhHCCEEEEECHHHHhcCCcHH
Confidence 2 223333221 11222233344 999999999887665432 1345688999999999986 3333
Q ss_pred H-hHHhhcC-CcccEEEeecCCCCC
Q 001731 454 R-AKSLLEI-PSAHRIIISGTPIQN 476 (1019)
Q Consensus 454 ~-~kal~~l-~~~~RllLTGTPiqN 476 (1019)
. ...+..+ +..+++++||||..+
T Consensus 149 ~~~~~~~~~~~~~~~v~~saT~~~~ 173 (201)
T smart00487 149 QLEKLLKLLPKNVQLLLLSATPPEE 173 (201)
T ss_pred HHHHHHHhCCccceEEEEecCCchh
Confidence 3 3333444 577889999999743
No 115
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.57 E-value=1.4e-13 Score=174.65 Aligned_cols=108 Identities=17% Similarity=0.258 Sum_probs=89.0
Q ss_pred CCCceeEecccHHHHHHHHHHHhhcCCe---EEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEE
Q 001731 676 EGHNVLIFSQTRKMLNLIQESIGSKGYK---FLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVI 752 (1019)
Q Consensus 676 ~g~KvLIFsq~~~~ldiL~~~L~~~gi~---~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VI 752 (1019)
....+|||+.....++.+...|...+++ +..++|++++.+|.++++.+ + ..-+|++|.++++||+++++++||
T Consensus 285 ~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~--g--~rkIIVATNIAEtSITIpgI~yVI 360 (1294)
T PRK11131 285 GPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH--S--GRRIVLATNVAETSLTVPGIKYVI 360 (1294)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc--C--CeeEEEeccHHhhccccCcceEEE
Confidence 4567999999999999999999987764 67889999999999987753 2 345889999999999999999999
Q ss_pred EcC---------------CCCCc---hhhhhhhhhhhhhCCCCcEEEEEEeeCCCH
Q 001731 753 VVD---------------PAWNP---STDNQSVDRAYRIGQKKDVVVYRLMTCGTV 790 (1019)
Q Consensus 753 i~D---------------~~WNp---~~~~QaiGRa~RiGQ~k~V~VyrLit~gTi 790 (1019)
.++ ++..| +.+.||.||++|. ++-.+|+|++....
T Consensus 361 D~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~---~~G~c~rLyte~d~ 413 (1294)
T PRK11131 361 DPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV---SEGICIRLYSEDDF 413 (1294)
T ss_pred ECCCccccccccccCcccCCeeecCHhhHhhhccccCCC---CCcEEEEeCCHHHH
Confidence 975 33333 6789999999987 46778999986544
No 116
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.55 E-value=6.3e-15 Score=131.04 Aligned_cols=78 Identities=33% Similarity=0.615 Sum_probs=74.2
Q ss_pred HHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCCCCCchhhhhhhhhhhhhC
Q 001731 695 ESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIG 774 (1019)
Q Consensus 695 ~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QaiGRa~RiG 774 (1019)
++|+..|+++..++|+++..+|+.+++.|+.+... +|++|.++++|+|++.+++||+++++||+..+.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~--vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIR--VLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSS--EEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCce--EEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 46888999999999999999999999999998864 8888999999999999999999999999999999999999987
No 117
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=3.3e-14 Score=155.80 Aligned_cols=119 Identities=20% Similarity=0.370 Sum_probs=104.6
Q ss_pred hHHHHHHHHHhhccCCCceeEecccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCccc
Q 001731 662 KISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGL 741 (1019)
Q Consensus 662 Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~ 741 (1019)
|+..|..+.+ .-...+|||+.+.-++.|...|..+|++...++|.+.+.+|..+...|+.+.+. +|++|...++
T Consensus 252 k~~~l~dl~~----~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssr--vlIttdl~ar 325 (397)
T KOG0327|consen 252 KLDTLCDLYR----RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSR--VLITTDLLAR 325 (397)
T ss_pred cccHHHHHHH----hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCce--EEeecccccc
Confidence 6666666666 234589999999999999999999999999999999999999999999999876 8999999999
Q ss_pred ccCcccCCEEEEcCCCCCchhhhhhhhhhhhhCCCCcEEEEEEeeCC
Q 001731 742 GLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCG 788 (1019)
Q Consensus 742 GLNLt~A~~VIi~D~~WNp~~~~QaiGRa~RiGQ~k~V~VyrLit~g 788 (1019)
|++++.++-||+||+|-|+..|.+|+||++|.|.+- .+..+++..
T Consensus 326 gidv~~~slvinydlP~~~~~yihR~gr~gr~grkg--~~in~v~~~ 370 (397)
T KOG0327|consen 326 GIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKG--VAINFVTEE 370 (397)
T ss_pred ccchhhcceeeeeccccchhhhhhhcccccccCCCc--eeeeeehHh
Confidence 999999999999999999999999999999999754 334455543
No 118
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.52 E-value=8.6e-14 Score=135.66 Aligned_cols=139 Identities=21% Similarity=0.189 Sum_probs=99.5
Q ss_pred CceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccH-HHHHHHHHHhcC-CCcEEEEcccccchhhHHHHHhhh
Q 001731 323 KGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLL-SHWIKELTAVGL-SAKIREYFGTCVKTRQYELQYVLQ 400 (1019)
Q Consensus 323 ~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl-~qW~~E~~k~~~-~~~v~~~~g~~~~~~~~~~~~~~~ 400 (1019)
+++++.+++|+|||.+++.++..+......+++||+||...+ .+|...+..+.. ...+..+.+....... ......
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 78 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQ--EKLLSG 78 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHH--HHHhcC
Confidence 368999999999999999998888776667899999999655 566667777665 3444444443322221 122345
Q ss_pred CCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcchHHh---HHhhcCCcccEEEeecCC
Q 001731 401 DKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRA---KSLLEIPSAHRIIISGTP 473 (1019)
Q Consensus 401 ~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s~~~---kal~~l~~~~RllLTGTP 473 (1019)
..+|+++||+.+........ .....|++||+||+|.+.+...... .........+++++||||
T Consensus 79 ~~~i~i~t~~~~~~~~~~~~----------~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 79 KTDIVVGTPGRLLDELERLK----------LSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CCCEEEECcHHHHHHHHcCC----------cchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 78999999998876554321 1234689999999999988765553 344456778889999998
No 119
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.51 E-value=3.2e-13 Score=171.96 Aligned_cols=110 Identities=16% Similarity=0.222 Sum_probs=90.1
Q ss_pred CCCceeEecccHHHHHHHHHHHhhcC---CeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEE
Q 001731 676 EGHNVLIFSQTRKMLNLIQESIGSKG---YKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVI 752 (1019)
Q Consensus 676 ~g~KvLIFsq~~~~ldiL~~~L~~~g---i~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VI 752 (1019)
....+|||+.....++.+...|...+ +.+..++|+++.++|.++++.+ . .+-+|++|.++..||++.++.+||
T Consensus 278 ~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~---~-~rkIVLATNIAEtSLTIpgV~yVI 353 (1283)
T TIGR01967 278 GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH---S-GRRIVLATNVAETSLTVPGIHYVI 353 (1283)
T ss_pred CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC---C-CceEEEeccHHHhccccCCeeEEE
Confidence 34679999999999999999998764 4588899999999999986544 2 234889999999999999999999
Q ss_pred EcCCC------------------CCchhhhhhhhhhhhhCCCCcEEEEEEeeCCCHHH
Q 001731 753 VVDPA------------------WNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEE 792 (1019)
Q Consensus 753 i~D~~------------------WNp~~~~QaiGRa~RiGQ~k~V~VyrLit~gTiEE 792 (1019)
.++.+ -+.+.+.||.||++|.| +-.+|+|++....+.
T Consensus 354 DsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~~~~ 408 (1283)
T TIGR01967 354 DTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEEDFNS 408 (1283)
T ss_pred eCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHHHHh
Confidence 98732 24468999999999987 667899998765443
No 120
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.50 E-value=1.9e-11 Score=149.47 Aligned_cols=126 Identities=21% Similarity=0.235 Sum_probs=110.7
Q ss_pred hhhhHHHHHHHHHhhccCCCceeEecccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCC
Q 001731 659 ISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQV 738 (1019)
Q Consensus 659 ~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~a 738 (1019)
..+++..|++.|..+...|.++||||.....++.|...|...|+++..+||.++..+|.+++..|..+... +|++|..
T Consensus 424 ~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~--VLV~t~~ 501 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFD--VLVGINL 501 (655)
T ss_pred ccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCce--EEEEcCh
Confidence 45678888999998888999999999999999999999999999999999999999999999999988744 7889999
Q ss_pred cccccCcccCCEEEEcC-----CCCCchhhhhhhhhhhhhCCCCcEEEEEEeeCCC
Q 001731 739 GGLGLTLTKADRVIVVD-----PAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGT 789 (1019)
Q Consensus 739 gg~GLNLt~A~~VIi~D-----~~WNp~~~~QaiGRa~RiGQ~k~V~VyrLit~gT 789 (1019)
.++|++++.++.||++| .+-+...++|++||++|.. ...++.|+...|
T Consensus 502 L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~---~G~vi~~~~~~~ 554 (655)
T TIGR00631 502 LREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV---NGKVIMYADKIT 554 (655)
T ss_pred hcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCC---CCEEEEEEcCCC
Confidence 99999999999999999 5668899999999999963 334555555444
No 121
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.50 E-value=1.5e-12 Score=156.64 Aligned_cols=302 Identities=19% Similarity=0.212 Sum_probs=180.1
Q ss_pred hcCCCceEEEcCCCchHHHHHHHHHHHHhhc--------CCCCeEEEEeCcc-cHH----HHHHHHHHhcCCCcEEEEcc
Q 001731 319 HCQGKGGILGDDMGLGKTMQICGFLAGLFHS--------RLIKRALVVAPKT-LLS----HWIKELTAVGLSAKIREYFG 385 (1019)
Q Consensus 319 ~~~~~GgILaDemGLGKTlqaIali~~l~~~--------~~~~~~LIVvP~s-Ll~----qW~~E~~k~~~~~~v~~~~g 385 (1019)
|..+.++|++.+||+|||..|.-.|...... +..-+++-|+|.. |.. .|-+.|.-| +..+..+.|
T Consensus 123 Y~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~--gi~v~ELTG 200 (1230)
T KOG0952|consen 123 YKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPL--GISVRELTG 200 (1230)
T ss_pred hcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccc--cceEEEecC
Confidence 5678899999999999998866555444442 1234899999974 433 344443333 456666767
Q ss_pred cccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcchH-----HhHHhhc
Q 001731 386 TCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQ-----RAKSLLE 460 (1019)
Q Consensus 386 ~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s~-----~~kal~~ 460 (1019)
.....+.. ...++|+|||++..---......... --....+|||||.|.+...... .++.++.
T Consensus 201 D~ql~~te-----i~~tqiiVTTPEKwDvvTRk~~~d~~-------l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~ 268 (1230)
T KOG0952|consen 201 DTQLTKTE-----IADTQIIVTTPEKWDVVTRKSVGDSA-------LFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRL 268 (1230)
T ss_pred cchhhHHH-----HHhcCEEEecccceeeeeeeeccchh-------hhhheeeEEeeeehhhcCcccchHHHHHHHHHHH
Confidence 65443332 35789999999865211111110000 0123679999999999765433 3333322
Q ss_pred C----CcccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccCCCcchhhHHHHhhHHHHHHHHHHhHH
Q 001731 461 I----PSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQP 536 (1019)
Q Consensus 461 l----~~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~~L~~~i~p 536 (1019)
. ..-+.++||||- -|+.|+. .||...+......|...|. |
T Consensus 269 vessqs~IRivgLSATl--PN~eDvA---~fL~vn~~~glfsFd~~yR-------------------------------P 312 (1230)
T KOG0952|consen 269 VESSQSMIRIVGLSATL--PNYEDVA---RFLRVNPYAGLFSFDQRYR-------------------------------P 312 (1230)
T ss_pred HHhhhhheEEEEeeccC--CCHHHHH---HHhcCCCccceeeeccccc-------------------------------c
Confidence 2 334557899994 2556654 4444443333334443331 1
Q ss_pred HHHHhhhhcccccCccccccccCccceEEEEEcCC--HHHHHHHHHHHhhHHHhhhcCCChHHHHHHHHHHhcChhhhhh
Q 001731 537 YFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLT--SCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLTK 614 (1019)
Q Consensus 537 ~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls--~~Q~~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~ll~~ 614 (1019)
..+ ....+-++-. ..|.+..
T Consensus 313 vpL----------------------~~~~iG~k~~~~~~~~~~~------------------------------------ 334 (1230)
T KOG0952|consen 313 VPL----------------------TQGFIGIKGKKNRQQKKNI------------------------------------ 334 (1230)
T ss_pred cce----------------------eeeEEeeecccchhhhhhH------------------------------------
Confidence 000 0001111100 0111000
Q ss_pred hhhhhhhhhccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhhccCCCceeEecccHHHHHHHH
Q 001731 615 RAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQ 694 (1019)
Q Consensus 615 ~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~ 694 (1019)
..++...+.+.+ .+|+.|+||+..+...-..+
T Consensus 335 --------------------------------------------d~~~~~kv~e~~----~~g~qVlvFvhsR~~Ti~tA 366 (1230)
T KOG0952|consen 335 --------------------------------------------DEVCYDKVVEFL----QEGHQVLVFVHSRNETIRTA 366 (1230)
T ss_pred --------------------------------------------HHHHHHHHHHHH----HcCCeEEEEEecChHHHHHH
Confidence 011233333333 36889999998887555555
Q ss_pred HHHhhc----CC-------------------eEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEE
Q 001731 695 ESIGSK----GY-------------------KFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRV 751 (1019)
Q Consensus 695 ~~L~~~----gi-------------------~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~V 751 (1019)
+.|... |. .+..-|.++.-.+|+-.-+.|..|... +|++|...+.|+||++--.+
T Consensus 367 ~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~--vL~cTaTLAwGVNLPA~aVi 444 (1230)
T KOG0952|consen 367 KKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIK--VLCCTATLAWGVNLPAYAVI 444 (1230)
T ss_pred HHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCce--EEEecceeeeccCCcceEEE
Confidence 555332 21 244557788889999999999999876 89999999999999987777
Q ss_pred EEcCCCCCchh----------hhhhhhhhhhhCCCCc
Q 001731 752 IVVDPAWNPST----------DNQSVDRAYRIGQKKD 778 (1019)
Q Consensus 752 Ii~D~~WNp~~----------~~QaiGRa~RiGQ~k~ 778 (1019)
|-=.+.|++.. ..|-+|||+|.+=.+.
T Consensus 445 IKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~ 481 (1230)
T KOG0952|consen 445 IKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSS 481 (1230)
T ss_pred ecCCcccccccCceeeehHHHHHHHHhccCCCCCCCC
Confidence 76677777654 6899999999764443
No 122
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.48 E-value=1.2e-11 Score=151.31 Aligned_cols=118 Identities=17% Similarity=0.170 Sum_probs=106.0
Q ss_pred hhhhHHHHHHHHHhhccCCCceeEecccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCC
Q 001731 659 ISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQV 738 (1019)
Q Consensus 659 ~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~a 738 (1019)
...|+.+|.+.+..+...|..|||||.++...+.|...|...|+++..+++ .+.+|++.+..|..++.. ++|+|..
T Consensus 580 ~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~--VtIATNM 655 (1025)
T PRK12900 580 RREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGA--VTIATNM 655 (1025)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCe--EEEeccC
Confidence 356999999999998889999999999999999999999999999999997 577999999999988766 9999999
Q ss_pred cccccCcc---cCC-----EEEEcCCCCCchhhhhhhhhhhhhCCCCcEE
Q 001731 739 GGLGLTLT---KAD-----RVIVVDPAWNPSTDNQSVDRAYRIGQKKDVV 780 (1019)
Q Consensus 739 gg~GLNLt---~A~-----~VIi~D~~WNp~~~~QaiGRa~RiGQ~k~V~ 780 (1019)
+|+|+|+. .+. +||.++.+-+...|.|++||++|.|..-...
T Consensus 656 AGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ 705 (1025)
T PRK12900 656 AGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESV 705 (1025)
T ss_pred cCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceE
Confidence 99999998 332 4588999999999999999999999887653
No 123
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.41 E-value=1e-10 Score=143.11 Aligned_cols=119 Identities=13% Similarity=0.196 Sum_probs=98.4
Q ss_pred hhhhHHHHHHHHHhhccCCCceeEecccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHH-HHHHhhhcCCCccEEEEecC
Q 001731 659 ISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRV-KIVNDFQEGDVAPIFLLTSQ 737 (1019)
Q Consensus 659 ~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eR~-~ii~~F~~~~~~~V~LlST~ 737 (1019)
...|+.++++-+..+...|..|||-|.+....+.|...|...|+++..++.... +++ .+|.. .|. ...+-|+|.
T Consensus 550 ~~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~--~~Ea~iia~--AG~-~g~VTIATN 624 (970)
T PRK12899 550 EREKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNH--AQEAEIIAG--AGK-LGAVTVATN 624 (970)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchh--hhHHHHHHh--cCC-CCcEEEeec
Confidence 457999999999999999999999999999999999999999999999988643 333 44443 222 223888999
Q ss_pred CcccccCcc--------cCCEEEEcCCCCCchhhhhhhhhhhhhCCCCcEEEE
Q 001731 738 VGGLGLTLT--------KADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVY 782 (1019)
Q Consensus 738 agg~GLNLt--------~A~~VIi~D~~WNp~~~~QaiGRa~RiGQ~k~V~Vy 782 (1019)
.+|+|-|+. +.=+||.-..+-|...+.|..||++|.|..-....|
T Consensus 625 mAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~ 677 (970)
T PRK12899 625 MAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFF 677 (970)
T ss_pred cccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEE
Confidence 999998873 456899999999999999999999999998765544
No 124
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.40 E-value=6.1e-13 Score=118.25 Aligned_cols=81 Identities=31% Similarity=0.532 Sum_probs=75.7
Q ss_pred HHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCCCCCchhhhhhhhhhh
Q 001731 692 LIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAY 771 (1019)
Q Consensus 692 iL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QaiGRa~ 771 (1019)
.|...|...++.+..++|.++..+|..+++.|+.+.. .+|++|.++++|+|++.+++||+++++||+..+.|++||++
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~--~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~ 79 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKI--KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAG 79 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCC--eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccc
Confidence 4667788889999999999999999999999998875 58899999999999999999999999999999999999999
Q ss_pred hhC
Q 001731 772 RIG 774 (1019)
Q Consensus 772 RiG 774 (1019)
|.|
T Consensus 80 R~g 82 (82)
T smart00490 80 RAG 82 (82)
T ss_pred cCC
Confidence 987
No 125
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.40 E-value=4.1e-12 Score=134.12 Aligned_cols=156 Identities=21% Similarity=0.208 Sum_probs=105.9
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHH-HHHHHHhhc--CCCCeEEEEeCc-ccHHHHHHHHHHhcC--
Q 001731 303 MLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQIC-GFLAGLFHS--RLIKRALVVAPK-TLLSHWIKELTAVGL-- 376 (1019)
Q Consensus 303 ~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaI-ali~~l~~~--~~~~~~LIVvP~-sLl~qW~~E~~k~~~-- 376 (1019)
.+++||.+++..+.. +++.+++.++|+|||+.++ +++..+... ....++|||+|. .++.||...+..+..
T Consensus 21 ~~~~~Q~~~~~~~~~----~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~ 96 (203)
T cd00268 21 KPTPIQARAIPPLLS----GRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHT 96 (203)
T ss_pred CCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 589999999988776 7889999999999999844 444444444 344589999998 677999999988765
Q ss_pred CCcEEEEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcc-hH-H
Q 001731 377 SAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPS-TQ-R 454 (1019)
Q Consensus 377 ~~~v~~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~-s~-~ 454 (1019)
+..+..+.|....... ........+|+|+|++.+........ .....++++|+||+|.+.+.. .. .
T Consensus 97 ~~~~~~~~~~~~~~~~--~~~~~~~~~iiv~T~~~l~~~l~~~~----------~~~~~l~~lIvDE~h~~~~~~~~~~~ 164 (203)
T cd00268 97 NLKVVVIYGGTSIDKQ--IRKLKRGPHIVVATPGRLLDLLERGK----------LDLSKVKYLVLDEADRMLDMGFEDQI 164 (203)
T ss_pred CceEEEEECCCCHHHH--HHHhcCCCCEEEEChHHHHHHHHcCC----------CChhhCCEEEEeChHHhhccChHHHH
Confidence 3344445554332221 22223478999999988766443221 123457899999999986543 22 2
Q ss_pred hHHhhcCC-cccEEEeecCCC
Q 001731 455 AKSLLEIP-SAHRIIISGTPI 474 (1019)
Q Consensus 455 ~kal~~l~-~~~RllLTGTPi 474 (1019)
...+..+. ....+++||||-
T Consensus 165 ~~~~~~l~~~~~~~~~SAT~~ 185 (203)
T cd00268 165 REILKLLPKDRQTLLFSATMP 185 (203)
T ss_pred HHHHHhCCcccEEEEEeccCC
Confidence 22333444 456788999996
No 126
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.39 E-value=9.8e-11 Score=140.03 Aligned_cols=120 Identities=18% Similarity=0.243 Sum_probs=99.4
Q ss_pred hhhhHHHHHHHHHhhccCCCceeEecccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCC
Q 001731 659 ISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQV 738 (1019)
Q Consensus 659 ~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~a 738 (1019)
...|+.++++-+.++.+.|..|||.+.+....+.|...|...|+++..++.... +.-..+|.+= |. ...+-|+|..
T Consensus 409 ~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~-~~EA~IIa~A--G~-~gaVTIATNM 484 (764)
T PRK12326 409 AAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKND-AEEARIIAEA--GK-YGAVTVSTQM 484 (764)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCch-HhHHHHHHhc--CC-CCcEEEEecC
Confidence 456999999999999999999999999999999999999999999999998754 2334555442 22 2337888999
Q ss_pred cccccCcc---------------cCCEEEEcCCCCCchhhhhhhhhhhhhCCCCcEEEE
Q 001731 739 GGLGLTLT---------------KADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVY 782 (1019)
Q Consensus 739 gg~GLNLt---------------~A~~VIi~D~~WNp~~~~QaiGRa~RiGQ~k~V~Vy 782 (1019)
+|+|-|+. +.=+||.-..+-|...+.|..||++|.|..-....|
T Consensus 485 AGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~ 543 (764)
T PRK12326 485 AGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFF 543 (764)
T ss_pred CCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEE
Confidence 99998874 456899999999999999999999999998766544
No 127
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.38 E-value=6e-12 Score=128.36 Aligned_cols=158 Identities=17% Similarity=0.202 Sum_probs=108.2
Q ss_pred hHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCc-ccHHHHHHHHHHhcCC--CcEEE
Q 001731 306 PHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK-TLLSHWIKELTAVGLS--AKIRE 382 (1019)
Q Consensus 306 phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~-sLl~qW~~E~~k~~~~--~~v~~ 382 (1019)
|+|.+++.-+.. ++..++..++|+|||..++..+...+.......+||++|. .++.|-..++..++.. ..+..
T Consensus 2 ~~Q~~~~~~i~~----~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~ 77 (169)
T PF00270_consen 2 PLQQEAIEAIIS----GKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVL 77 (169)
T ss_dssp HHHHHHHHHHHT----TSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEE
T ss_pred HHHHHHHHHHHc----CCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeeccccccccccccccccccccccccc
Confidence 799999987774 6789999999999999877655555444444699999998 6788888999888765 45555
Q ss_pred EcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCc-chH-HhHHhhc
Q 001731 383 YFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNP-STQ-RAKSLLE 460 (1019)
Q Consensus 383 ~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~-~s~-~~kal~~ 460 (1019)
+++...... ..........+|+|+|++.+......... .....++||+||+|.+... ... ....+..
T Consensus 78 ~~~~~~~~~-~~~~~~~~~~~ilv~T~~~l~~~~~~~~~----------~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~ 146 (169)
T PF00270_consen 78 LHGGQSISE-DQREVLSNQADILVTTPEQLLDLISNGKI----------NISRLSLIVIDEAHHLSDETFRAMLKSILRR 146 (169)
T ss_dssp ESTTSCHHH-HHHHHHHTTSSEEEEEHHHHHHHHHTTSS----------TGTTESEEEEETHHHHHHTTHHHHHHHHHHH
T ss_pred ccccccccc-cccccccccccccccCcchhhcccccccc----------ccccceeeccCcccccccccHHHHHHHHHHH
Confidence 555443221 11222235689999999999876654111 1123799999999999663 222 2222233
Q ss_pred C---CcccEEEeecCCCCCCHH
Q 001731 461 I---PSAHRIIISGTPIQNNLK 479 (1019)
Q Consensus 461 l---~~~~RllLTGTPiqN~l~ 479 (1019)
+ +..+.+++||||- .++.
T Consensus 147 ~~~~~~~~~i~~SAT~~-~~~~ 167 (169)
T PF00270_consen 147 LKRFKNIQIILLSATLP-SNVE 167 (169)
T ss_dssp SHTTTTSEEEEEESSST-HHHH
T ss_pred hcCCCCCcEEEEeeCCC-hhHh
Confidence 3 3466899999996 4443
No 128
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.38 E-value=1.2e-09 Score=134.60 Aligned_cols=125 Identities=20% Similarity=0.262 Sum_probs=109.8
Q ss_pred hhhhHHHHHHHHHhhccCCCceeEecccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCC
Q 001731 659 ISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQV 738 (1019)
Q Consensus 659 ~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~a 738 (1019)
...++..|+..|..+...|.++||||.+...++.|...|...|+++..+||.++..+|..++..|..+... +|++|.+
T Consensus 428 ~~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~--vlV~t~~ 505 (652)
T PRK05298 428 TKGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFD--VLVGINL 505 (652)
T ss_pred ccccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCce--EEEEeCH
Confidence 45678888899988888999999999999999999999999999999999999999999999999987743 7889999
Q ss_pred cccccCcccCCEEEEcCC-----CCCchhhhhhhhhhhhhCCCCcEEEEEEeeCC
Q 001731 739 GGLGLTLTKADRVIVVDP-----AWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCG 788 (1019)
Q Consensus 739 gg~GLNLt~A~~VIi~D~-----~WNp~~~~QaiGRa~RiGQ~k~V~VyrLit~g 788 (1019)
.++|++++.++.||++|. +-++..+.|++||++|. . .-.++.|+...
T Consensus 506 L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~--~G~~i~~~~~~ 557 (652)
T PRK05298 506 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-V--NGKVILYADKI 557 (652)
T ss_pred HhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-C--CCEEEEEecCC
Confidence 999999999999999996 56899999999999994 2 33455566543
No 129
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.37 E-value=3.9e-11 Score=149.65 Aligned_cols=129 Identities=22% Similarity=0.217 Sum_probs=102.9
Q ss_pred hccCCCceeEecccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhc--CCCccEEEEecCCcccccCcccCCE
Q 001731 673 LIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQE--GDVAPIFLLTSQVGGLGLTLTKADR 750 (1019)
Q Consensus 673 ~~~~g~KvLIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~--~~~~~V~LlST~agg~GLNLt~A~~ 750 (1019)
-...|.+++|-++.+..+..+...|+..+.+++.+||.++...|.+.++.... ..+...++|+|++...|+|+. .+.
T Consensus 436 ~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~ 514 (733)
T COG1203 436 EVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDV 514 (733)
T ss_pred hhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCe
Confidence 34578999999999999999999999888789999999999999998886553 222345899999999999998 665
Q ss_pred EEEcCCCCCchhhhhhhhhhhhhC--CCCcEEEEEEeeCCCHHHHHHHHHHHHHhH
Q 001731 751 VIVVDPAWNPSTDNQSVDRAYRIG--QKKDVVVYRLMTCGTVEEKIYRKQIFKGGL 804 (1019)
Q Consensus 751 VIi~D~~WNp~~~~QaiGRa~RiG--Q~k~V~VyrLit~gTiEEkI~~rq~~K~~l 804 (1019)
+|- |+. -....+||.||++|-| ....+++|...-.+....+.++....+...
T Consensus 515 mIT-e~a-PidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 568 (733)
T COG1203 515 LIT-ELA-PIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSYEKLEKKLKS 568 (733)
T ss_pred eee-cCC-CHHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhhhcchhhhcc
Confidence 553 322 2456899999999999 556688888888888888888776666443
No 130
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.23 E-value=2.5e-09 Score=131.15 Aligned_cols=121 Identities=18% Similarity=0.232 Sum_probs=99.6
Q ss_pred hhhhHHHHHHHHHhhccCCCceeEecccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCC
Q 001731 659 ISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQV 738 (1019)
Q Consensus 659 ~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~a 738 (1019)
...|+.++++-+..+.+.|..|||-+.+....+.|...|...|+++..++.... +.-..+|. +.|. ...+-|+|..
T Consensus 431 ~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~-~~EA~IIa--~AG~-~GaVTIATNM 506 (913)
T PRK13103 431 AEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYH-EKEAEIIA--QAGR-PGALTIATNM 506 (913)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccc-hhHHHHHH--cCCC-CCcEEEeccC
Confidence 467999999999999999999999999999999999999999999988887644 23334555 3333 2237888899
Q ss_pred cccccCcc-------------------------------------cCCEEEEcCCCCCchhhhhhhhhhhhhCCCCcEEE
Q 001731 739 GGLGLTLT-------------------------------------KADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVV 781 (1019)
Q Consensus 739 gg~GLNLt-------------------------------------~A~~VIi~D~~WNp~~~~QaiGRa~RiGQ~k~V~V 781 (1019)
+|+|-|+. +.=+||.-..+-|-..+.|..||++|.|..-....
T Consensus 507 AGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f 586 (913)
T PRK13103 507 AGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRF 586 (913)
T ss_pred CCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEE
Confidence 99998874 45689999999999999999999999999877655
Q ss_pred EE
Q 001731 782 YR 783 (1019)
Q Consensus 782 yr 783 (1019)
|-
T Consensus 587 ~l 588 (913)
T PRK13103 587 YL 588 (913)
T ss_pred EE
Confidence 43
No 131
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.19 E-value=4.2e-09 Score=127.83 Aligned_cols=119 Identities=16% Similarity=0.207 Sum_probs=99.3
Q ss_pred hhhhHHHHHHHHHhhccCCCceeEecccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHH-HHHHhhhcCCCccEEEEecC
Q 001731 659 ISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRV-KIVNDFQEGDVAPIFLLTSQ 737 (1019)
Q Consensus 659 ~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eR~-~ii~~F~~~~~~~V~LlST~ 737 (1019)
...|+.++++-+.++...|..|||.|.+....+.|...|...|+++..++.... +|+ .+|. +.|. ...+-|+|.
T Consensus 408 ~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~--e~EA~IIa--~AG~-~GaVTIATN 482 (925)
T PRK12903 408 KHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN--AREAEIIA--KAGQ-KGAITIATN 482 (925)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch--hhHHHHHH--hCCC-CCeEEEecc
Confidence 467999999999998899999999999999999999999999999999998643 444 3444 4443 234788889
Q ss_pred CcccccCccc--------CCEEEEcCCCCCchhhhhhhhhhhhhCCCCcEEEE
Q 001731 738 VGGLGLTLTK--------ADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVY 782 (1019)
Q Consensus 738 agg~GLNLt~--------A~~VIi~D~~WNp~~~~QaiGRa~RiGQ~k~V~Vy 782 (1019)
.+|+|-|+.- .=+||....+-|-..+.|..||++|.|..-....|
T Consensus 483 MAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~ 535 (925)
T PRK12903 483 MAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFF 535 (925)
T ss_pred cccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEE
Confidence 9999998753 34999999999999999999999999998765544
No 132
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.17 E-value=8.9e-09 Score=123.43 Aligned_cols=144 Identities=18% Similarity=0.200 Sum_probs=94.0
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccH-HHHHHHHHHhcCCCcEE
Q 001731 303 MLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLL-SHWIKELTAVGLSAKIR 381 (1019)
Q Consensus 303 ~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl-~qW~~E~~k~~~~~~v~ 381 (1019)
.|-++|+++|--|.+ |...++|..|-+|||+.|=..++.. .....+++.-.|-..+ .|=.++|+.-+.+..
T Consensus 297 elD~FQk~Ai~~ler----g~SVFVAAHTSAGKTvVAEYAiala--q~h~TR~iYTSPIKALSNQKfRDFk~tF~Dvg-- 368 (1248)
T KOG0947|consen 297 ELDTFQKEAIYHLER----GDSVFVAAHTSAGKTVVAEYAIALA--QKHMTRTIYTSPIKALSNQKFRDFKETFGDVG-- 368 (1248)
T ss_pred CccHHHHHHHHHHHc----CCeEEEEecCCCCcchHHHHHHHHH--HhhccceEecchhhhhccchHHHHHHhccccc--
Confidence 577899999977766 8889999999999999865443322 2234688999997666 555677765443332
Q ss_pred EEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcchH-HhHHhh-
Q 001731 382 EYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQ-RAKSLL- 459 (1019)
Q Consensus 382 ~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s~-~~kal~- 459 (1019)
...|... +.....++|+|-+.+++-.-.... . -.....||+||.|.+.+.... .|.-+.
T Consensus 369 LlTGDvq---------inPeAsCLIMTTEILRsMLYrgad--l--------iRDvE~VIFDEVHYiND~eRGvVWEEViI 429 (1248)
T KOG0947|consen 369 LLTGDVQ---------INPEASCLIMTTEILRSMLYRGAD--L--------IRDVEFVIFDEVHYINDVERGVVWEEVII 429 (1248)
T ss_pred eeeccee---------eCCCcceEeehHHHHHHHHhcccc--h--------hhccceEEEeeeeecccccccccceeeee
Confidence 2223221 224567999999999875532221 1 122678999999999765433 344433
Q ss_pred cCCc-ccEEEeecCC
Q 001731 460 EIPS-AHRIIISGTP 473 (1019)
Q Consensus 460 ~l~~-~~RllLTGTP 473 (1019)
.++. -..|+||||-
T Consensus 430 MlP~HV~~IlLSATV 444 (1248)
T KOG0947|consen 430 MLPRHVNFILLSATV 444 (1248)
T ss_pred eccccceEEEEeccC
Confidence 3333 3458899994
No 133
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.17 E-value=4e-09 Score=120.16 Aligned_cols=131 Identities=22% Similarity=0.307 Sum_probs=105.7
Q ss_pred hHHHHHHHHHhhccCCCceeEecccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCccc
Q 001731 662 KISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGL 741 (1019)
Q Consensus 662 Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~ 741 (1019)
-+.-|+.-+....+.+.|+||-+-.++|++-|..+|...|+++.++|.....-+|..++...+.|.-. +|+.....-+
T Consensus 431 QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~D--vLVGINLLRE 508 (663)
T COG0556 431 QVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFD--VLVGINLLRE 508 (663)
T ss_pred cHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCcc--EEEeehhhhc
Confidence 34445555555566899999999999999999999999999999999999999999999999999744 8888999999
Q ss_pred ccCcccCCEEEEcCCCC-----CchhhhhhhhhhhhhCCCCcEEEEEEeeCCCHHHHHH
Q 001731 742 GLTLTKADRVIVVDPAW-----NPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIY 795 (1019)
Q Consensus 742 GLNLt~A~~VIi~D~~W-----Np~~~~QaiGRa~RiGQ~k~V~VyrLit~gTiEEkI~ 795 (1019)
||+++.++-|.|+|.+. +-...+|-+|||.|--. -.|..|-=...+++.+.|-
T Consensus 509 GLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~-GkvIlYAD~iT~sM~~Ai~ 566 (663)
T COG0556 509 GLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKVILYADKITDSMQKAID 566 (663)
T ss_pred cCCCcceeEEEEeecCccccccccchHHHHHHHHhhccC-CeEEEEchhhhHHHHHHHH
Confidence 99999999999999884 78899999999999322 2344443333334444443
No 134
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.17 E-value=8.6e-10 Score=134.78 Aligned_cols=72 Identities=25% Similarity=0.384 Sum_probs=61.9
Q ss_pred CCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEE----cCCC---C---Cchhhhhhhhhh
Q 001731 701 GYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIV----VDPA---W---NPSTDNQSVDRA 770 (1019)
Q Consensus 701 gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi----~D~~---W---Np~~~~QaiGRa 770 (1019)
.+.|+.-|.+++..+|...-+-|.++... +|++|...+.|+||++-+.+|- |||. | +|....|..||+
T Consensus 607 pygfaIHhAGl~R~dR~~~EdLf~~g~iq--vlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgra 684 (1674)
T KOG0951|consen 607 PYGFAIHHAGLNRKDRELVEDLFADGHIQ--VLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRA 684 (1674)
T ss_pred hccceeeccCCCcchHHHHHHHHhcCcee--EEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhc
Confidence 46789999999999999999999999866 8999999999999997655542 7775 4 688999999999
Q ss_pred hhhC
Q 001731 771 YRIG 774 (1019)
Q Consensus 771 ~RiG 774 (1019)
+|.+
T Consensus 685 grp~ 688 (1674)
T KOG0951|consen 685 GRPQ 688 (1674)
T ss_pred CCCc
Confidence 9975
No 135
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.17 E-value=5.1e-10 Score=116.23 Aligned_cols=127 Identities=18% Similarity=0.105 Sum_probs=83.3
Q ss_pred hHHHHHHHHHHHhhcCCCceEEEcCCCchHHHH-HHHHHHHHhhcCCCCeEEEEeCcc-cHHHHHHHH---HHhcCCCcE
Q 001731 306 PHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQ-ICGFLAGLFHSRLIKRALVVAPKT-LLSHWIKEL---TAVGLSAKI 380 (1019)
Q Consensus 306 phQ~egV~~L~~~~~~~~GgILaDemGLGKTlq-aIali~~l~~~~~~~~~LIVvP~s-Ll~qW~~E~---~k~~~~~~v 380 (1019)
..|.+++...+- |...+.-.-.|+|||.. +++.+..+-.....-.+||+|.+. |..|..+|. .++.|+.++
T Consensus 67 evqhecipqail----gmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~vkv 142 (387)
T KOG0329|consen 67 EVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKV 142 (387)
T ss_pred HhhhhhhhHHhh----cchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceE
Confidence 467777755443 44455555789999954 344444443334334789999984 556777765 567899999
Q ss_pred EEEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccC
Q 001731 381 REYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIK 448 (1019)
Q Consensus 381 ~~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iK 448 (1019)
.+++|.....+..++. .+-.+|++.|++.+...... ..+........|+|||.++.
T Consensus 143 aVFfGG~~Ikkdee~l--k~~PhivVgTPGrilALvr~----------k~l~lk~vkhFvlDEcdkml 198 (387)
T KOG0329|consen 143 SVFFGGLFIKKDEELL--KNCPHIVVGTPGRILALVRN----------RSLNLKNVKHFVLDECDKML 198 (387)
T ss_pred EEEEcceeccccHHHH--hCCCeEEEcCcHHHHHHHHh----------ccCchhhcceeehhhHHHHH
Confidence 9999876554443332 23578999999987654332 12344557789999998763
No 136
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=99.13 E-value=5.1e-10 Score=122.09 Aligned_cols=258 Identities=22% Similarity=0.259 Sum_probs=149.6
Q ss_pred ccccCCCCccccCccc--cCCCchHHHHHHHHHHHhhc------CCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEE
Q 001731 285 ITLSGPRSTYMLPGKI--GNMLFPHQREGLRWLWSLHC------QGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRAL 356 (1019)
Q Consensus 285 ~~~~~~~~~~~lp~~i--~~~L~phQ~egV~~L~~~~~------~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~L 356 (1019)
+.+|.+.....||..+ ...|-.-|.++|-+....+. .+.|-+|+|.+|.||..|+.++|...+..+..+++.
T Consensus 17 v~~P~~~y~~~lp~~~~~~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vw 96 (303)
T PF13872_consen 17 VAPPDPTYRLHLPEEVIDSGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVW 96 (303)
T ss_pred CCCCCCCcccCCCHHHHhcccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCCceEE
Confidence 3444555566788854 34789999999998887665 357889999999999999998888777776544444
Q ss_pred EEeCcccHHHHHHHHHHhcCCCcEEEEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccC-CCcccC-cCCCCCC
Q 001731 357 VVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRG-SSFISD-EAGDDDA 434 (1019)
Q Consensus 357 IVvP~sLl~qW~~E~~k~~~~~~v~~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~-~~~~~~-~~~~~~~ 434 (1019)
|-+...|...-.+.+...+... +.+..-..-+.. .. ..-..+|+++||..++........ ...+.. ...+...
T Consensus 97 vS~s~dL~~Da~RDl~DIG~~~-i~v~~l~~~~~~--~~--~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~d 171 (303)
T PF13872_consen 97 VSVSNDLKYDAERDLRDIGADN-IPVHPLNKFKYG--DI--IRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGED 171 (303)
T ss_pred EECChhhhhHHHHHHHHhCCCc-ccceechhhccC--cC--CCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcC
Confidence 4455577777777777654332 111111110000 00 112568999999999876432110 000000 0000011
Q ss_pred CccEEEEcCCcccCCcch------HHhHHhhc----CCcccEEEeecCCCCCCHHHHHHHHHhhcCCCCC------ChHH
Q 001731 435 IWDYMILDEGHLIKNPST------QRAKSLLE----IPSAHRIIISGTPIQNNLKELWALFNFCCPELLG------DNKW 498 (1019)
Q Consensus 435 ~wd~VIlDEAH~iKN~~s------~~~kal~~----l~~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg------~~~~ 498 (1019)
.=.+||+||||+.||..+ ++..++.. ++..+.+-.|||.... +. +|.-+.+-+++| +...
T Consensus 172 fdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgase-p~---NmaYm~RLGLWG~gtpf~~~~~ 247 (303)
T PF13872_consen 172 FDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGASE-PR---NMAYMSRLGLWGPGTPFPDFDD 247 (303)
T ss_pred CCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccCC-Cc---eeeeeeeccccCCCCCCCCHHH
Confidence 125899999999999755 55556544 4555678899998742 22 222223334443 4444
Q ss_pred HHHHhhcccccCCCcchhhHHHHhhHHHHHHHHHHh--HHHHHHhhhhcccccCccccccccCccceEEEEEcCCHHHHH
Q 001731 499 FKEKYELPILRGNDKHALDREKRIGSAVAKELRERI--QPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQ 576 (1019)
Q Consensus 499 F~~~f~~pi~~~~~~~a~~~e~~~~~~~~~~L~~~i--~p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~ 576 (1019)
|...... +. ...++-+...+ ...+++|.. ........++.++|++.|.+
T Consensus 248 f~~a~~~----gG------------v~amE~vA~dlKa~G~yiaR~L-------------Sf~gvef~~~e~~l~~~~~~ 298 (303)
T PF13872_consen 248 FLEAMEK----GG------------VGAMEMVAMDLKARGMYIARQL-------------SFEGVEFEIEEVPLTPEQIK 298 (303)
T ss_pred HHHHHHh----cC------------chHHHHHHHHHHhcchheeeec-------------ccCCceEEEEEecCCHHHHH
Confidence 5444321 11 11222222222 233444432 24455667888999999999
Q ss_pred HHHH
Q 001731 577 LYEA 580 (1019)
Q Consensus 577 lY~~ 580 (1019)
+|+.
T Consensus 299 ~Yd~ 302 (303)
T PF13872_consen 299 MYDA 302 (303)
T ss_pred HhcC
Confidence 9975
No 137
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.08 E-value=1.6e-08 Score=128.93 Aligned_cols=78 Identities=18% Similarity=0.367 Sum_probs=59.8
Q ss_pred CCCceeEecccHHHHHHHHHHHhh----cCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCC--
Q 001731 676 EGHNVLIFSQTRKMLNLIQESIGS----KGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKAD-- 749 (1019)
Q Consensus 676 ~g~KvLIFsq~~~~ldiL~~~L~~----~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~-- 749 (1019)
.+.++|||+.+..+++.+...|.. .++. .+..+.. ..|.+++++|+.++.. +|++|.+..+|+|+++..
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~--~l~q~~~-~~r~~ll~~F~~~~~~--iLlgt~sf~EGVD~~g~~l~ 747 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPEFEGYE--VLAQGIN-GSRAKIKKRFNNGEKA--ILLGTSSFWEGVDFPGNGLV 747 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhccccCce--EEecCCC-ccHHHHHHHHHhCCCe--EEEEcceeecccccCCCceE
Confidence 456899999999999999999875 2444 3333333 5799999999987644 778889999999998754
Q ss_pred EEEEcCCCC
Q 001731 750 RVIVVDPAW 758 (1019)
Q Consensus 750 ~VIi~D~~W 758 (1019)
.||+.-.|+
T Consensus 748 ~viI~~LPf 756 (850)
T TIGR01407 748 CLVIPRLPF 756 (850)
T ss_pred EEEEeCCCC
Confidence 677776665
No 138
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.98 E-value=5.4e-08 Score=118.30 Aligned_cols=129 Identities=21% Similarity=0.266 Sum_probs=87.0
Q ss_pred ccCCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcc-cHHHHHHHHHHhcCC-
Q 001731 300 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKT-LLSHWIKELTAVGLS- 377 (1019)
Q Consensus 300 i~~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~s-Ll~qW~~E~~k~~~~- 377 (1019)
....++..|+.-...+.+ |..--+..+||+|||.-.+. ++++-....++++||+|++ |+.|-.+.+.++...
T Consensus 79 ~G~~~ws~QR~WakR~~r----g~SFaiiAPTGvGKTTfg~~--~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~ 152 (1187)
T COG1110 79 TGFRPWSAQRVWAKRLVR----GKSFAIIAPTGVGKTTFGLL--MSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDA 152 (1187)
T ss_pred hCCCchHHHHHHHHHHHc----CCceEEEcCCCCchhHHHHH--HHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhc
Confidence 344678889864444444 55555566999999954333 3333333348999999995 568888888887632
Q ss_pred ----CcEEEEcccccc-hhhHHHHHhh-hCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCccc
Q 001731 378 ----AKIREYFGTCVK-TRQYELQYVL-QDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLI 447 (1019)
Q Consensus 378 ----~~v~~~~g~~~~-~~~~~~~~~~-~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~i 447 (1019)
..+. ||+.-.. .++..+..+. ++++|+|||-+.+.++...+. ..+||+|++|-+..+
T Consensus 153 ~~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~------------~~kFdfifVDDVDA~ 215 (1187)
T COG1110 153 GSLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELS------------KLKFDFIFVDDVDAI 215 (1187)
T ss_pred CCcceeee-eccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhc------------ccCCCEEEEccHHHH
Confidence 2233 7775333 3333344333 469999999999998887664 456999999999976
No 139
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.95 E-value=9.3e-08 Score=117.08 Aligned_cols=84 Identities=14% Similarity=0.166 Sum_probs=67.5
Q ss_pred hhhhHHHHHHHHHhhccCCCceeEecccHHHHHHHHHHHhhcCCeEEEEECCCCH-HHHHHHHHhhhcCCCccEEEEecC
Q 001731 659 ISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKA-SDRVKIVNDFQEGDVAPIFLLTSQ 737 (1019)
Q Consensus 659 ~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~-~eR~~ii~~F~~~~~~~V~LlST~ 737 (1019)
...|+.++++-+......|..|||-|.+....+.|...|...|+++..++..... +.-..+|.+ .|. ...+-|+|.
T Consensus 406 ~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~--AG~-~G~VTIATN 482 (870)
T CHL00122 406 ELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQ--AGR-KGSITIATN 482 (870)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHh--cCC-CCcEEEecc
Confidence 4568889999888888999999999999999999999999999999999997432 344456665 333 233788889
Q ss_pred CcccccCc
Q 001731 738 VGGLGLTL 745 (1019)
Q Consensus 738 agg~GLNL 745 (1019)
.+|+|-|+
T Consensus 483 MAGRGTDI 490 (870)
T CHL00122 483 MAGRGTDI 490 (870)
T ss_pred ccCCCcCe
Confidence 99999664
No 140
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.95 E-value=1.8e-08 Score=125.15 Aligned_cols=94 Identities=11% Similarity=-0.048 Sum_probs=60.2
Q ss_pred hhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcchHHhHH--hhc-CCcccEEEeecCCC
Q 001731 398 VLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKS--LLE-IPSAHRIIISGTPI 474 (1019)
Q Consensus 398 ~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s~~~ka--l~~-l~~~~RllLTGTPi 474 (1019)
.+..++|+++|+..+..+.-... +....+..||+||||++....+-.+.+ .+. -+..+..++|+.|-
T Consensus 4 ly~~ggi~~~T~rIl~~DlL~~r----------i~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~ 73 (814)
T TIGR00596 4 VYLEGGIFSITSRILVVDLLTGI----------IPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPE 73 (814)
T ss_pred HhhcCCEEEEechhhHhHHhcCC----------CCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCc
Confidence 46688999999999988764322 234557899999999997655433222 222 14566788999997
Q ss_pred CC--CHHHHHHHHHhhcCCCCCChHHHHH
Q 001731 475 QN--NLKELWALFNFCCPELLGDNKWFKE 501 (1019)
Q Consensus 475 qN--~l~EL~sll~fl~p~~lg~~~~F~~ 501 (1019)
.- ...-+-.+++-|.-..+.-+..|..
T Consensus 74 ~~~~g~~~l~~vmk~L~i~~v~l~prf~~ 102 (814)
T TIGR00596 74 AFTMGFSPLETKMRNLFLRHVYLWPRFHV 102 (814)
T ss_pred ccccchHHHHHHHHHhCcCeEEEeCCCch
Confidence 63 3455555666555444333334433
No 141
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=98.89 E-value=6.9e-08 Score=120.31 Aligned_cols=149 Identities=19% Similarity=0.193 Sum_probs=98.2
Q ss_pred ccCCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcc-cHHHHHHHHHHhcCC-
Q 001731 300 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKT-LLSHWIKELTAVGLS- 377 (1019)
Q Consensus 300 i~~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~s-Ll~qW~~E~~k~~~~- 377 (1019)
....|.|+|++++.-+-+ +.+.+++.+||+|||+.+-.+++..+..+ .+++-..|.. |-.|=..+|..-+..
T Consensus 116 ~~F~LD~fQ~~a~~~Ler----~esVlV~ApTssGKTvVaeyAi~~al~~~--qrviYTsPIKALsNQKyrdl~~~fgdv 189 (1041)
T COG4581 116 YPFELDPFQQEAIAILER----GESVLVCAPTSSGKTVVAEYAIALALRDG--QRVIYTSPIKALSNQKYRDLLAKFGDV 189 (1041)
T ss_pred CCCCcCHHHHHHHHHHhC----CCcEEEEccCCCCcchHHHHHHHHHHHcC--CceEeccchhhhhhhHHHHHHHHhhhh
Confidence 455789999999987766 89999999999999998877666555444 4699999974 556666666543321
Q ss_pred -CcEEEEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcchHHh-
Q 001731 378 -AKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRA- 455 (1019)
Q Consensus 378 -~~v~~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s~~~- 455 (1019)
..+..+.|.-. +..+..++++|-+.+++-.-.- .........||+||.|.|....-...
T Consensus 190 ~~~vGL~TGDv~---------IN~~A~clvMTTEILRnMlyrg----------~~~~~~i~~ViFDEvHyi~D~eRG~VW 250 (1041)
T COG4581 190 ADMVGLMTGDVS---------INPDAPCLVMTTEILRNMLYRG----------SESLRDIEWVVFDEVHYIGDRERGVVW 250 (1041)
T ss_pred hhhccceeccee---------eCCCCceEEeeHHHHHHHhccC----------cccccccceEEEEeeeeccccccchhH
Confidence 11222222211 2235568888889988754321 11234467899999999977654433
Q ss_pred H-HhhcCCcc-cEEEeecCC
Q 001731 456 K-SLLEIPSA-HRIIISGTP 473 (1019)
Q Consensus 456 k-al~~l~~~-~RllLTGTP 473 (1019)
. .+..++.. +-++||||-
T Consensus 251 EE~Ii~lP~~v~~v~LSATv 270 (1041)
T COG4581 251 EEVIILLPDHVRFVFLSATV 270 (1041)
T ss_pred HHHHHhcCCCCcEEEEeCCC
Confidence 3 33344444 678899994
No 142
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=98.84 E-value=6e-08 Score=107.80 Aligned_cols=211 Identities=21% Similarity=0.206 Sum_probs=120.7
Q ss_pred ceEEEEEcCCHHHHHHHHHHHhhHH--H----hhhcC-------------CChHHHHHHHHHHhcChhhhhhhhhhhhhh
Q 001731 562 NEMIVWLRLTSCQRQLYEAFLNSEI--V----LSAFD-------------GSPLAALTILKKICDHPLLLTKRAAEDVLD 622 (1019)
Q Consensus 562 ~e~vv~~~ls~~Q~~lY~~~l~~~~--~----~~~~~-------------~~~l~~l~~Lrkic~hP~ll~~~~~~~~~~ 622 (1019)
.++.+.++|+..|+.+|+.++.... . ..... .....++..|+.+|+||.|+.......-..
T Consensus 4 ~~y~lP~pmt~~QKdl~e~iislh~~~il~~~~~~~~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP~LlvdH~mPk~ll 83 (297)
T PF11496_consen 4 GEYYLPTPMTSFQKDLYEQIISLHYSDILKFCETNDSSESIDSLLDESLVQSMELLIENLRLVANHPSLLVDHYMPKQLL 83 (297)
T ss_dssp SEEEEEE---HHHHHHHHHHHHHTHHHHHHHHHSTTT--HHHH-------HHHHHHHHHHHHHHH-GGGT--TT--S-S-
T ss_pred ceEEEecCccHHHHHHHHHHHHHHHHHHHHHHcccCccccccchhhhhhHHHHHHHHHHHHHhccCccccccccCccccc
Confidence 3567889999999999999875311 1 11100 112346678999999999976543211100
Q ss_pred hccCCCChhHHHHHHHHHHHHhhhhhhhhhhhhccchhhhHHHHHHHHHhh-----ccCCCceeEecccHHHHHHHHHHH
Q 001731 623 GMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKL-----IPEGHNVLIFSQTRKMLNLIQESI 697 (1019)
Q Consensus 623 ~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~-----~~~g~KvLIFsq~~~~ldiL~~~L 697 (1019)
...........|+|+++|-.++..+ ...+.+++|.++..+++++|+.+|
T Consensus 84 --------------------------~~e~~~~~~~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~l 137 (297)
T PF11496_consen 84 --------------------------LSEPAEWLAYTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLL 137 (297)
T ss_dssp --------------------------STTHHHHHHHT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHH
T ss_pred --------------------------cchHHHHHHHcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHH
Confidence 1111122334799999999999999 666789999999999999999999
Q ss_pred hhcCCeEEEEECCCCHHHHHHHH------------Hhhhc--CCCccEEEEecCCccc----ccCcccCCEEEEcCCCCC
Q 001731 698 GSKGYKFLRIDGTTKASDRVKIV------------NDFQE--GDVAPIFLLTSQVGGL----GLTLTKADRVIVVDPAWN 759 (1019)
Q Consensus 698 ~~~gi~~~ridG~~s~~eR~~ii------------~~F~~--~~~~~V~LlST~agg~----GLNLt~A~~VIi~D~~WN 759 (1019)
...++.|-|++|..-..+....- ..... .....++|+++.-... .++-...+.||-||+.++
T Consensus 138 lGk~~~~kr~sg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d 217 (297)
T PF11496_consen 138 LGKKLNYKRYSGESLYDEKHKVPKNGNTESNSSNNSKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFD 217 (297)
T ss_dssp TTSSSEEEESSS--S--S---S----------------------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--
T ss_pred ccCCeeEEecCCCCCcCccccCCcccccccccccccccccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCC
Confidence 99999999999976554443332 11111 1223466776654433 233456789999999999
Q ss_pred chhhhhhhhhhhhhCCCCcEEEEEEeeCCCHHHHHHHHHH
Q 001731 760 PSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQI 799 (1019)
Q Consensus 760 p~~~~QaiGRa~RiGQ~k~V~VyrLit~gTiEEkI~~rq~ 799 (1019)
+....-..-|.....+ +.+-|+||++.+|+|--+.....
T Consensus 218 ~~~p~i~~lR~~~~~~-~~~PiirLv~~nSiEHi~L~~~~ 256 (297)
T PF11496_consen 218 TSLPSIEQLRTQNRRN-RLCPIIRLVPSNSIEHIELCFPK 256 (297)
T ss_dssp TTSHHHHHHH--------S--EEEEEETTSHHHHHHHHTT
T ss_pred CCChHHHHHHhhcCCC-CCCcEEEEeeCCCHHHHHHHccC
Confidence 8875554445443333 78999999999999988765433
No 143
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=98.84 E-value=5.7e-08 Score=114.08 Aligned_cols=145 Identities=18% Similarity=0.203 Sum_probs=90.9
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccH-HHHHHHHHHhcCCCcE
Q 001731 302 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLL-SHWIKELTAVGLSAKI 380 (1019)
Q Consensus 302 ~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl-~qW~~E~~k~~~~~~v 380 (1019)
..|-|+|..+|.-+- ++...++..-|..|||+.|-..|+..++.+ .|++.-.|-..+ .|=.+||..-+.+.-
T Consensus 128 F~LDpFQ~~aI~Cid----r~eSVLVSAHTSAGKTVVAeYAIA~sLr~k--QRVIYTSPIKALSNQKYREl~~EF~DVG- 200 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKCID----RGESVLVSAHTSAGKTVVAEYAIAMSLREK--QRVIYTSPIKALSNQKYRELLEEFKDVG- 200 (1041)
T ss_pred cccCchHhhhhhhhc----CCceEEEEeecCCCcchHHHHHHHHHHHhc--CeEEeeChhhhhcchhHHHHHHHhcccc-
Confidence 378899999986553 367888888999999998665555444433 589999997555 555666654332211
Q ss_pred EEEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcchHHhH--Hh
Q 001731 381 REYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAK--SL 458 (1019)
Q Consensus 381 ~~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s~~~k--al 458 (1019)
...|.-. +......+|+|-+.+++-.-... . --.....||+||.|.+|........ .+
T Consensus 201 -LMTGDVT---------InP~ASCLVMTTEILRsMLYRGS--E--------vmrEVaWVIFDEIHYMRDkERGVVWEETI 260 (1041)
T KOG0948|consen 201 -LMTGDVT---------INPDASCLVMTTEILRSMLYRGS--E--------VMREVAWVIFDEIHYMRDKERGVVWEETI 260 (1041)
T ss_pred -eeeccee---------eCCCCceeeeHHHHHHHHHhccc--h--------HhheeeeEEeeeehhccccccceeeeeeE
Confidence 1122111 12345689999999986543211 1 1223567999999999876544322 23
Q ss_pred hcCCc-ccEEEeecCC
Q 001731 459 LEIPS-AHRIIISGTP 473 (1019)
Q Consensus 459 ~~l~~-~~RllLTGTP 473 (1019)
.-++. .+-+.||||-
T Consensus 261 IllP~~vr~VFLSATi 276 (1041)
T KOG0948|consen 261 ILLPDNVRFVFLSATI 276 (1041)
T ss_pred EeccccceEEEEeccC
Confidence 33443 4457899994
No 144
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.84 E-value=9.3e-08 Score=122.00 Aligned_cols=158 Identities=22% Similarity=0.164 Sum_probs=100.5
Q ss_pred chHHHHHHHHHHHh------hcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcc-cHHHHHHHHHHhcCC
Q 001731 305 FPHQREGLRWLWSL------HCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKT-LLSHWIKELTAVGLS 377 (1019)
Q Consensus 305 ~phQ~egV~~L~~~------~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~s-Ll~qW~~E~~k~~~~ 377 (1019)
+.||..+++..... ...++||++.|-+|+|||++++-++..+........++|||-.. |-.|-..+|..+...
T Consensus 250 ~~~q~~av~~~i~~~~~~~~~~~~~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~ 329 (962)
T COG0610 250 RYAQYRAVQKAIKRILKASNPGDGKGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKV 329 (962)
T ss_pred HHHHHHHHHHHHHHHHhccCCCcCCceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHh
Confidence 44566666522221 13457899999999999999887777676666666888888875 457889999887654
Q ss_pred CcEEEEcccccchhhHHHHHhhh--CCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcchHHh
Q 001731 378 AKIREYFGTCVKTRQYELQYVLQ--DKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRA 455 (1019)
Q Consensus 378 ~~v~~~~g~~~~~~~~~~~~~~~--~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s~~~ 455 (1019)
..... . ......+...+. ..+|+|||-+.|........ ........-+||+||||+- ......
T Consensus 330 ~~~~~-~----~~s~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~--------~~~~~~~~ivvI~DEaHRS--Q~G~~~ 394 (962)
T COG0610 330 AFNDP-K----AESTSELKELLEDGKGKIIVTTIQKFNKAVKEDE--------LELLKRKNVVVIIDEAHRS--QYGELA 394 (962)
T ss_pred hhhcc-c----ccCHHHHHHHHhcCCCcEEEEEecccchhhhccc--------ccccCCCcEEEEEechhhc--cccHHH
Confidence 44322 1 111122333333 45899999988765443220 0012345678999999985 333344
Q ss_pred HHhhc-CCcccEEEeecCCCCCC
Q 001731 456 KSLLE-IPSAHRIIISGTPIQNN 477 (1019)
Q Consensus 456 kal~~-l~~~~RllLTGTPiqN~ 477 (1019)
+.++. ++...-++.||||+.-.
T Consensus 395 ~~~~~~~~~a~~~gFTGTPi~~~ 417 (962)
T COG0610 395 KLLKKALKKAIFIGFTGTPIFKE 417 (962)
T ss_pred HHHHHHhccceEEEeeCCccccc
Confidence 44333 45567789999998643
No 145
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.84 E-value=1.6e-07 Score=114.77 Aligned_cols=153 Identities=20% Similarity=0.128 Sum_probs=105.5
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCc-ccHHHHHHHHHHhcCCCcE
Q 001731 302 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK-TLLSHWIKELTAVGLSAKI 380 (1019)
Q Consensus 302 ~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~-sLl~qW~~E~~k~~~~~~v 380 (1019)
..|-+-|..++..+........-.+|.-.||+|||-.-+.+|+..+..+ +.+||+||- ++..|-...|+..+. .++
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G--kqvLvLVPEI~Ltpq~~~rf~~rFg-~~v 273 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG--KQVLVLVPEIALTPQLLARFKARFG-AKV 273 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcC--CEEEEEeccccchHHHHHHHHHHhC-CCh
Confidence 4678899999998887542234557788999999998888888887766 789999997 889998888887655 666
Q ss_pred EEEccccc-chhhHHHHHhh-hCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCccc--CCcchHHhH
Q 001731 381 REYFGTCV-KTRQYELQYVL-QDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLI--KNPSTQRAK 456 (1019)
Q Consensus 381 ~~~~g~~~-~~~~~~~~~~~-~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~i--KN~~s~~~k 456 (1019)
.++++.-. ..+...+.++. +...|||-|-..+-.-.+ +..+||+||=|-- |..+.-++.
T Consensus 274 ~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~Pf~-----------------~LGLIIvDEEHD~sYKq~~~prYh 336 (730)
T COG1198 274 AVLHSGLSPGERYRVWRRARRGEARVVIGTRSALFLPFK-----------------NLGLIIVDEEHDSSYKQEDGPRYH 336 (730)
T ss_pred hhhcccCChHHHHHHHHHHhcCCceEEEEechhhcCchh-----------------hccEEEEeccccccccCCcCCCcC
Confidence 66665433 33333444443 467899988776643322 3579999999963 544432222
Q ss_pred ----Hh--hcCCcccEEEeecCCC
Q 001731 457 ----SL--LEIPSAHRIIISGTPI 474 (1019)
Q Consensus 457 ----al--~~l~~~~RllLTGTPi 474 (1019)
++ .....-..++-||||.
T Consensus 337 ARdvA~~Ra~~~~~pvvLgSATPS 360 (730)
T COG1198 337 ARDVAVLRAKKENAPVVLGSATPS 360 (730)
T ss_pred HHHHHHHHHHHhCCCEEEecCCCC
Confidence 11 1223445678899994
No 146
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.83 E-value=8.3e-07 Score=109.74 Aligned_cols=119 Identities=16% Similarity=0.220 Sum_probs=98.7
Q ss_pred hhhhHHHHHHHHHhhccCCCceeEecccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHH-HHHHhhhcCCCccEEEEecC
Q 001731 659 ISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRV-KIVNDFQEGDVAPIFLLTSQ 737 (1019)
Q Consensus 659 ~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eR~-~ii~~F~~~~~~~V~LlST~ 737 (1019)
...|+.++++-+..+...|+.|||-+.+....+.|...|...|+++..++.... +++ .+|.+= |. .-.+-|+|.
T Consensus 610 ~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h--~~EAeIVA~A--G~-~GaVTIATN 684 (1112)
T PRK12901 610 KREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLH--QKEAEIVAEA--GQ-PGTVTIATN 684 (1112)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccch--hhHHHHHHhc--CC-CCcEEEecc
Confidence 456999999999999999999999999999999999999999999988887644 333 444432 22 123788889
Q ss_pred CcccccCcc--------cCCEEEEcCCCCCchhhhhhhhhhhhhCCCCcEEEE
Q 001731 738 VGGLGLTLT--------KADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVY 782 (1019)
Q Consensus 738 agg~GLNLt--------~A~~VIi~D~~WNp~~~~QaiGRa~RiGQ~k~V~Vy 782 (1019)
.+|+|-|+. +.=+||.-..+-|...+.|..||++|.|..-....|
T Consensus 685 MAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~ 737 (1112)
T PRK12901 685 MAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFY 737 (1112)
T ss_pred CcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEE
Confidence 999998875 668999999999999999999999999988765544
No 147
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=98.82 E-value=3.7e-08 Score=109.02 Aligned_cols=97 Identities=23% Similarity=0.356 Sum_probs=88.7
Q ss_pred CCCceeEecccHHHHHHHHHHHhhcC---CeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEE
Q 001731 676 EGHNVLIFSQTRKMLNLIQESIGSKG---YKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVI 752 (1019)
Q Consensus 676 ~g~KvLIFsq~~~~ldiL~~~L~~~g---i~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VI 752 (1019)
.-.|.||||....-.+-|++++...| +.++-++|...+.+|.+-++.|....-. |||+|+++++||++++...+|
T Consensus 504 ~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvk--flictdvaargldi~g~p~~i 581 (725)
T KOG0349|consen 504 AMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVK--FLICTDVAARGLDITGLPFMI 581 (725)
T ss_pred ccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeE--EEEEehhhhccccccCCceEE
Confidence 45689999999999999999998764 7899999999999999999999987755 999999999999999999999
Q ss_pred EcCCCCCchhhhhhhhhhhhhC
Q 001731 753 VVDPAWNPSTDNQSVDRAYRIG 774 (1019)
Q Consensus 753 i~D~~WNp~~~~QaiGRa~RiG 774 (1019)
++.+|-....|.+|+||++|.-
T Consensus 582 nvtlpd~k~nyvhrigrvgrae 603 (725)
T KOG0349|consen 582 NVTLPDDKTNYVHRIGRVGRAE 603 (725)
T ss_pred EEecCcccchhhhhhhccchhh
Confidence 9999999999999999998853
No 148
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.81 E-value=1.7e-06 Score=106.07 Aligned_cols=84 Identities=13% Similarity=0.218 Sum_probs=66.8
Q ss_pred hhhhHHHHHHHHHhhccCCCceeEecccHHHHHHHHHHHhhcCCeEEEEECCC-CHHHHHHHHHhhhcCCCccEEEEecC
Q 001731 659 ISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTT-KASDRVKIVNDFQEGDVAPIFLLTSQ 737 (1019)
Q Consensus 659 ~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~~~L~~~gi~~~ridG~~-s~~eR~~ii~~F~~~~~~~V~LlST~ 737 (1019)
...|+.++++-+.++.+.|..|||-+.+....+.|...|...|+++..++... ..+.-..+|.+ .|. ..-+-|+|.
T Consensus 421 ~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~--AG~-~GaVTIATN 497 (939)
T PRK12902 421 EIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQ--AGR-KGAVTIATN 497 (939)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHh--cCC-CCcEEEecc
Confidence 45799999999999999999999999999999999999999999999999973 33344456665 333 223777889
Q ss_pred CcccccCc
Q 001731 738 VGGLGLTL 745 (1019)
Q Consensus 738 agg~GLNL 745 (1019)
.+|+|-|+
T Consensus 498 MAGRGTDI 505 (939)
T PRK12902 498 MAGRGTDI 505 (939)
T ss_pred CCCCCcCE
Confidence 88988554
No 149
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.79 E-value=6.8e-07 Score=111.94 Aligned_cols=70 Identities=21% Similarity=0.313 Sum_probs=56.4
Q ss_pred CchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhh-cCCCCeEEEEeCc-ccHHHHHHHHHH
Q 001731 304 LFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFH-SRLIKRALVVAPK-TLLSHWIKELTA 373 (1019)
Q Consensus 304 L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~-~~~~~~~LIVvP~-sLl~qW~~E~~k 373 (1019)
+||.|++....++.....+..+++-.+||+|||+.+++....+.. .+...++++.+.+ +-+.|-.+|+++
T Consensus 11 ~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 11 IYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred CCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 699999999999998888999999999999999987765555443 3333466666666 568899999987
No 150
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=98.78 E-value=3e-07 Score=110.77 Aligned_cols=164 Identities=20% Similarity=0.150 Sum_probs=107.0
Q ss_pred hHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCc-ccHHHHHHHHHH-h-cCCCcEE-
Q 001731 306 PHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK-TLLSHWIKELTA-V-GLSAKIR- 381 (1019)
Q Consensus 306 phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~-sLl~qW~~E~~k-~-~~~~~v~- 381 (1019)
.+|++-+ ....++..+++..++-.|||..+--++...++....+-++.|+|+ +++.|-..++.. | .+.....
T Consensus 514 ~WQ~elL----DsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~ 589 (1330)
T KOG0949|consen 514 EWQRELL----DSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGV 589 (1330)
T ss_pred HHHHHHh----hhhhcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccch
Confidence 4677643 334457889999999999999988888888888888899999998 677777666543 2 1111110
Q ss_pred EEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcc-hHHhHHhhc
Q 001731 382 EYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPS-TQRAKSLLE 460 (1019)
Q Consensus 382 ~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~-s~~~kal~~ 460 (1019)
...| .-.+.+.+. .-.+.|+||-++.+....-.-..... --....|||+||.|.|.|.. +..+..+..
T Consensus 590 sl~g--~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~-------~cerIRyiIfDEVH~iG~~ed~l~~Eqll~ 658 (1330)
T KOG0949|consen 590 SLLG--DLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQK-------FCERIRYIIFDEVHLIGNEEDGLLWEQLLL 658 (1330)
T ss_pred hhHh--hhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhh-------hhhcceEEEechhhhccccccchHHHHHHH
Confidence 0111 111222211 11578999999988654432100000 01235799999999998854 556666666
Q ss_pred CCcccEEEeecCCCCCCHHHHHHHHH
Q 001731 461 IPSAHRIIISGTPIQNNLKELWALFN 486 (1019)
Q Consensus 461 l~~~~RllLTGTPiqN~l~EL~sll~ 486 (1019)
+-.-.-++||||- +|+..++..++
T Consensus 659 li~CP~L~LSATi--gN~~l~qkWln 682 (1330)
T KOG0949|consen 659 LIPCPFLVLSATI--GNPNLFQKWLN 682 (1330)
T ss_pred hcCCCeeEEeccc--CCHHHHHHHHH
Confidence 6666778999994 77777777766
No 151
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=98.77 E-value=1.3e-07 Score=111.20 Aligned_cols=200 Identities=23% Similarity=0.292 Sum_probs=112.9
Q ss_pred CccccCccccCCCchHHHHHHHHHHHhhcC------CCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCc-ccH
Q 001731 292 STYMLPGKIGNMLFPHQREGLRWLWSLHCQ------GKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK-TLL 364 (1019)
Q Consensus 292 ~~~~lp~~i~~~L~phQ~egV~~L~~~~~~------~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~-sLl 364 (1019)
..+.||..-...|-.-|.++|-|....+.. .-|-+|+|.-|.||-.++.++|...+-.+ .+++|.+.-. -|.
T Consensus 253 YqlalP~i~sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkG-RKrAlW~SVSsDLK 331 (1300)
T KOG1513|consen 253 YQLALPSIDSGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKG-RKRALWFSVSSDLK 331 (1300)
T ss_pred EEEecccCcccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcc-cceeEEEEeccccc
Confidence 345677755568889999999998875432 24679999999988776555554443333 3567766544 565
Q ss_pred HHHHHHHHHhcCCCcEEEEcccccchhhHHH-HHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCc------c
Q 001731 365 SHWIKELTAVGLSAKIREYFGTCVKTRQYEL-QYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIW------D 437 (1019)
Q Consensus 365 ~qW~~E~~k~~~~~~v~~~~g~~~~~~~~~~-~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~w------d 437 (1019)
..-.+.+...+-.. +.++.-+.-+-.+... .....+.+|+++||..+.......... +-. ..-....| .
T Consensus 332 fDAERDL~DigA~~-I~V~alnK~KYakIss~en~n~krGViFaTYtaLIGEs~~~~~k-yrt--R~rQllqW~Ge~feG 407 (1300)
T KOG1513|consen 332 FDAERDLRDIGATG-IAVHALNKFKYAKISSKENTNTKRGVIFATYTALIGESQGKGGK-YRT--RFRQLLQWCGEDFEG 407 (1300)
T ss_pred cchhhchhhcCCCC-ccceehhhcccccccccccCCccceeEEEeeHhhhhhccccCch-HHH--HHHHHHHHhhhccce
Confidence 66667776643222 2222111000000000 000124589999999886544321100 000 00001112 6
Q ss_pred EEEEcCCcccCC-------cchHHhHHhhc----CCcccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHH
Q 001731 438 YMILDEGHLIKN-------PSTQRAKSLLE----IPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFK 500 (1019)
Q Consensus 438 ~VIlDEAH~iKN-------~~s~~~kal~~----l~~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~ 500 (1019)
+||+||||+.|| ..+++.+++.. |+..+.+-.|||-.. |=-++...++-+++|....|.
T Consensus 408 vIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATGAs----EPrNMaYM~RLGlWGegtaf~ 477 (1300)
T KOG1513|consen 408 VIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASATGAS----EPRNMAYMVRLGLWGEGTAFP 477 (1300)
T ss_pred eEEehhhhhhcccccccCCCcCcccHhHHHHHHhCCCceEEEeeccCCC----CcchhhhhhhhccccCCCcCc
Confidence 899999999999 34566666654 456667778988543 333455555667766654443
No 152
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=98.73 E-value=1.5e-07 Score=114.07 Aligned_cols=69 Identities=26% Similarity=0.325 Sum_probs=55.0
Q ss_pred eEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCCC-----CCchhhhhhhhhhhhhC
Q 001731 703 KFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPA-----WNPSTDNQSVDRAYRIG 774 (1019)
Q Consensus 703 ~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~~-----WNp~~~~QaiGRa~RiG 774 (1019)
.+.+.|.+.+.++|.-+-..|+.+... ++++|...+-|+||++- +||+=-|. -.-..|.|.+|||+|.|
T Consensus 524 GvAyHhaGLT~eER~~iE~afr~g~i~--vl~aTSTlaaGVNLPAr-RVIiraP~~g~~~l~~~~YkQM~GRAGR~g 597 (1008)
T KOG0950|consen 524 GVAYHHAGLTSEEREIIEAAFREGNIF--VLVATSTLAAGVNLPAR-RVIIRAPYVGREFLTRLEYKQMVGRAGRTG 597 (1008)
T ss_pred cceecccccccchHHHHHHHHHhcCeE--EEEecchhhccCcCCcc-eeEEeCCccccchhhhhhHHhhhhhhhhcc
Confidence 467788889999999888899998754 77777889999999964 55553333 35578999999999997
No 153
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.61 E-value=1.5e-06 Score=107.84 Aligned_cols=110 Identities=20% Similarity=0.328 Sum_probs=81.1
Q ss_pred CCceeEecccHHHHHHHHHHHhh----cCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEE
Q 001731 677 GHNVLIFSQTRKMLNLIQESIGS----KGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVI 752 (1019)
Q Consensus 677 g~KvLIFsq~~~~ldiL~~~L~~----~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VI 752 (1019)
..-+|||-.-...++...+.|.. ..+.++-++|.++.++..++++--..+. +-++++|.++..+|++.++..||
T Consensus 259 ~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~--RKVVlATNIAETSLTI~gIr~VI 336 (845)
T COG1643 259 SGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGK--RKVVLATNIAETSLTIPGIRYVI 336 (845)
T ss_pred CCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCc--ceEEEEccccccceeeCCeEEEe
Confidence 45699999988888888888876 3578899999999998888544333332 33889999999999999999987
Q ss_pred E--------cCCCC----------CchhhhhhhhhhhhhCCCCcEEEEEEeeCCCHH
Q 001731 753 V--------VDPAW----------NPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVE 791 (1019)
Q Consensus 753 i--------~D~~W----------Np~~~~QaiGRa~RiGQ~k~V~VyrLit~gTiE 791 (1019)
= |++.- +-+.-.||-||| |.+.+-..|||++.+..+
T Consensus 337 DsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRA---GR~~pGicyRLyse~~~~ 390 (845)
T COG1643 337 DSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRA---GRTGPGICYRLYSEEDFL 390 (845)
T ss_pred cCCcccccccccccCceeeeEEEechhhhhhhcccc---ccCCCceEEEecCHHHHH
Confidence 2 33321 223444555555 557888999999987665
No 154
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.57 E-value=4.2e-05 Score=98.52 Aligned_cols=95 Identities=15% Similarity=0.255 Sum_probs=65.4
Q ss_pred HHHHHHHhhc-cCCCceeEecccHHHHHHHHHHHhhcCC--eEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCccc
Q 001731 665 FILSLLDKLI-PEGHNVLIFSQTRKMLNLIQESIGSKGY--KFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGL 741 (1019)
Q Consensus 665 ~L~~LL~~~~-~~g~KvLIFsq~~~~ldiL~~~L~~~gi--~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~ 741 (1019)
.+.+.|..+. ..+.++|||..+..++..+...|..... .+..+.-+++...|.+++++|+.++.. +|+.+....+
T Consensus 739 ~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~--iLlG~~sFwE 816 (928)
T PRK08074 739 EVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKA--ILLGTSSFWE 816 (928)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCe--EEEecCcccC
Confidence 3344443333 2456788888888889988888865422 133333234335689999999986644 7778899999
Q ss_pred ccCcccC--CEEEEcCCCC-Cch
Q 001731 742 GLTLTKA--DRVIVVDPAW-NPS 761 (1019)
Q Consensus 742 GLNLt~A--~~VIi~D~~W-Np~ 761 (1019)
|+|+++. ..||+.-.|+ +|.
T Consensus 817 GVD~pg~~l~~viI~kLPF~~p~ 839 (928)
T PRK08074 817 GIDIPGDELSCLVIVRLPFAPPD 839 (928)
T ss_pred ccccCCCceEEEEEecCCCCCCC
Confidence 9999874 8899988777 453
No 155
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.50 E-value=5.8e-05 Score=91.92 Aligned_cols=68 Identities=19% Similarity=0.198 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCc-ccHHHHHHHHHHhc
Q 001731 308 QREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK-TLLSHWIKELTAVG 375 (1019)
Q Consensus 308 Q~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~-sLl~qW~~E~~k~~ 375 (1019)
|.+-+.++...+..+...++-.+||+|||+..+..+..+......+++||.+|+ .|..|+.+++..+.
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~l~~l~ 70 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSELERLT 70 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHHHHHHH
Confidence 777788888877777777777899999999866544333332234799999999 56688888776543
No 156
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.50 E-value=4.7e-05 Score=96.49 Aligned_cols=88 Identities=14% Similarity=0.157 Sum_probs=62.3
Q ss_pred HHHHHHhhccCCCceeEecccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCc
Q 001731 666 ILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTL 745 (1019)
Q Consensus 666 L~~LL~~~~~~g~KvLIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNL 745 (1019)
+.+.|..+...+.++||+..+..+++.+...|....+.. ...|... .|.+++++|+.+++. +|+.|....+|+|+
T Consensus 636 ~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~--vLlG~~sFwEGVD~ 710 (820)
T PRK07246 636 IAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQ--ILLGLGSFWEGVDF 710 (820)
T ss_pred HHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCe--EEEecchhhCCCCC
Confidence 333343333456788888888899998888887655544 5556432 367799999986644 78888999999999
Q ss_pred c--cCCEEEEcCCCC
Q 001731 746 T--KADRVIVVDPAW 758 (1019)
Q Consensus 746 t--~A~~VIi~D~~W 758 (1019)
+ .+..||+.-.|+
T Consensus 711 p~~~~~~viI~kLPF 725 (820)
T PRK07246 711 VQADRMIEVITRLPF 725 (820)
T ss_pred CCCCeEEEEEecCCC
Confidence 6 356677766553
No 157
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.49 E-value=2.5e-06 Score=99.60 Aligned_cols=130 Identities=20% Similarity=0.274 Sum_probs=86.0
Q ss_pred CceeEecccHH----HHHHHHHHHhh------cCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCccc
Q 001731 678 HNVLIFSQTRK----MLNLIQESIGS------KGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTK 747 (1019)
Q Consensus 678 ~KvLIFsq~~~----~ldiL~~~L~~------~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~ 747 (1019)
.-+|||-.-.+ +.++|...|.. .++.++-|...++..-..++... ...+.+-++++|..+...|++.+
T Consensus 564 GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~--a~~~vRK~IvATNIAETSLTi~g 641 (1042)
T KOG0924|consen 564 GDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQK--AEGGVRKCIVATNIAETSLTIPG 641 (1042)
T ss_pred CCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhccc--CCCCceeEEEeccchhhceeecc
Confidence 34677754332 45555555543 26788889999887766555332 23345668999999999999999
Q ss_pred CCEEEEcCCC----CC-----------chhhhhhhhhhhhhCCCCcEEEEEEeeCCCHHHHHHHH---HHHHHhHHHHHh
Q 001731 748 ADRVIVVDPA----WN-----------PSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRK---QIFKGGLFKTAT 809 (1019)
Q Consensus 748 A~~VIi~D~~----WN-----------p~~~~QaiGRa~RiGQ~k~V~VyrLit~gTiEEkI~~r---q~~K~~l~~~~~ 809 (1019)
+.+||=.... +| |..-.||--|++|.|.+.+-+.|||+|..+....++.. -+....+.+.++
T Consensus 642 I~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~stvPEIqRTNl~nvVL 721 (1042)
T KOG0924|consen 642 IRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGPGTCYRLYTEDAYKNEMLPSTVPEIQRTNLSNVVL 721 (1042)
T ss_pred eEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCCCcceeeehhhhHHHhhcccCCCchhhhcchhhHHH
Confidence 9999842211 23 34445566666666778899999999999888887732 233445555543
No 158
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=98.48 E-value=9.6e-06 Score=95.84 Aligned_cols=112 Identities=17% Similarity=0.249 Sum_probs=81.8
Q ss_pred CCceeEecccHHHHHHHHHHHhhc----C--C--eEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccC
Q 001731 677 GHNVLIFSQTRKMLNLIQESIGSK----G--Y--KFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKA 748 (1019)
Q Consensus 677 g~KvLIFsq~~~~ldiL~~~L~~~----g--i--~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A 748 (1019)
..-+|||=...+.++...+.|... + . -++-++|+++.++..++.+.-- ++.+-++++|..+...|++.+.
T Consensus 258 ~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p--~g~RKvIlsTNIAETSlTI~GI 335 (674)
T KOG0922|consen 258 PGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAP--PGKRKVILSTNIAETSLTIDGI 335 (674)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCC--CCcceEEEEcceeeeeEEecce
Confidence 336999999888777777776543 1 1 2567899999888766644322 2456699999999999999999
Q ss_pred CEEE--------EcCCCC-------CchhhhhhhhhhhhhCCCCcEEEEEEeeCCCH
Q 001731 749 DRVI--------VVDPAW-------NPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTV 790 (1019)
Q Consensus 749 ~~VI--------i~D~~W-------Np~~~~QaiGRa~RiGQ~k~V~VyrLit~gTi 790 (1019)
.+|| .|+|.- -|..-.||.-|++|.|.+.+..+|||+++.-.
T Consensus 336 ~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 336 RYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAY 392 (674)
T ss_pred EEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHH
Confidence 8886 233321 12355677778888888999999999998766
No 159
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.45 E-value=2.5e-06 Score=106.42 Aligned_cols=146 Identities=15% Similarity=0.103 Sum_probs=90.5
Q ss_pred ceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCccc-HHHHHHH---------HHHhcCCCcEE--EEccccc--c
Q 001731 324 GGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTL-LSHWIKE---------LTAVGLSAKIR--EYFGTCV--K 389 (1019)
Q Consensus 324 GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sL-l~qW~~E---------~~k~~~~~~v~--~~~g~~~--~ 389 (1019)
+..+.++||+|||.+++..|..+.......++|||||... .....+- |...+.+..+. +|.+... +
T Consensus 61 n~~~~M~TGtGKT~~~~~~i~~l~~~~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k~ 140 (986)
T PRK15483 61 NIDIKMETGTGKTYVYTRLMYELHQKYGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKKS 140 (986)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCccccc
Confidence 5678899999999999999999988877889999999843 3333332 22333333333 3332210 0
Q ss_pred hh---hHHHHHhhh-------CCCEEEecHHHHHhccccccCCCcccCcC--CCCCCCc-------cEEEEcCCcccCCc
Q 001731 390 TR---QYELQYVLQ-------DKGVLLTTYDIVRNNSKSLRGSSFISDEA--GDDDAIW-------DYMILDEGHLIKNP 450 (1019)
Q Consensus 390 ~~---~~~~~~~~~-------~~dVvItTy~~l~~~~~~l~~~~~~~~~~--~~~~~~w-------d~VIlDEAH~iKN~ 450 (1019)
.+ ...+..... ...|+|+|-+++.+....... .+.. ......| -.||+||+|++..
T Consensus 141 gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~----~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~- 215 (986)
T PRK15483 141 GRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDD----YDQTLLGGFTSPVDALAATRPVVIIDEPHRFPR- 215 (986)
T ss_pred ccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccch----hhhhhccCCCChHHHHHhCCCEEEEECCCCCCc-
Confidence 01 111111111 357999999999654210000 0110 0111223 4799999999955
Q ss_pred chHHhHHhhcCCcccEEEeecCCC
Q 001731 451 STQRAKSLLEIPSAHRIIISGTPI 474 (1019)
Q Consensus 451 ~s~~~kal~~l~~~~RllLTGTPi 474 (1019)
..+.+.++..+.....+.-|||--
T Consensus 216 ~~k~~~~i~~lnpl~~lrysAT~~ 239 (986)
T PRK15483 216 DNKFYQAIEALKPQMIIRFGATFP 239 (986)
T ss_pred chHHHHHHHhcCcccEEEEeeecC
Confidence 345778899999989888999963
No 160
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=98.43 E-value=1.9e-05 Score=98.11 Aligned_cols=122 Identities=17% Similarity=0.309 Sum_probs=87.5
Q ss_pred hHHHHHHHHHhhcc--CCCceeEecccHHHHHHHHHHHhhc-------CCeEEEEECCCCHHHHHHHHHhhhcCCCccEE
Q 001731 662 KISFILSLLDKLIP--EGHNVLIFSQTRKMLNLIQESIGSK-------GYKFLRIDGTTKASDRVKIVNDFQEGDVAPIF 732 (1019)
Q Consensus 662 Kl~~L~~LL~~~~~--~g~KvLIFsq~~~~ldiL~~~L~~~-------gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~ 732 (1019)
....+..++..+.+ ....+|||-....-+..+...|..+ .+-+..+|+.++..+.+.+...--.|. +-+
T Consensus 396 d~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~--RKI 473 (924)
T KOG0920|consen 396 DYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGT--RKI 473 (924)
T ss_pred cHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCc--chh
Confidence 34445555554443 3467999999988888887777532 255778899999888777755544443 448
Q ss_pred EEecCCcccccCcccCCEEE--------EcCCC---------C-CchhhhhhhhhhhhhCCCCcEEEEEEeeCC
Q 001731 733 LLTSQVGGLGLTLTKADRVI--------VVDPA---------W-NPSTDNQSVDRAYRIGQKKDVVVYRLMTCG 788 (1019)
Q Consensus 733 LlST~agg~GLNLt~A~~VI--------i~D~~---------W-Np~~~~QaiGRa~RiGQ~k~V~VyrLit~g 788 (1019)
|++|..+..+|++.++-+|| .|||. | +-+.-.||.|||+| .++-.+|+|++..
T Consensus 474 IlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGR---v~~G~cy~L~~~~ 544 (924)
T KOG0920|consen 474 ILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGR---VRPGICYHLYTRS 544 (924)
T ss_pred hhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccC---ccCCeeEEeechh
Confidence 99999999999998887776 45554 3 44566788888877 6777899998865
No 161
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.40 E-value=2.1e-06 Score=84.28 Aligned_cols=129 Identities=21% Similarity=0.233 Sum_probs=67.4
Q ss_pred CCceEEEcCCCchHHHHHHH-HHHHHhhcCCCCeEEEEeCcccHHHHHHHHHHhcCCCcEEEEcccccchhhHHHHHhhh
Q 001731 322 GKGGILGDDMGLGKTMQICG-FLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQ 400 (1019)
Q Consensus 322 ~~GgILaDemGLGKTlqaIa-li~~l~~~~~~~~~LIVvP~sLl~qW~~E~~k~~~~~~v~~~~g~~~~~~~~~~~~~~~ 400 (1019)
+.--+|-..+|.|||..++. ++...... ..++||+.|+.++. +|+.+...+..+... . ..... ....
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~~--~~rvLvL~PTRvva---~em~~aL~~~~~~~~-t-~~~~~-----~~~g 71 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIKR--RLRVLVLAPTRVVA---EEMYEALKGLPVRFH-T-NARMR-----THFG 71 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHHT--T--EEEEESSHHHH---HHHHHHTTTSSEEEE-S-TTSS---------S
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHHc--cCeEEEecccHHHH---HHHHHHHhcCCcccC-c-eeeec-----cccC
Confidence 44457788999999998765 33333333 36999999997653 333333333333322 1 11111 1124
Q ss_pred CCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcchHHhH-HhhcC---CcccEEEeecCCC
Q 001731 401 DKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAK-SLLEI---PSAHRIIISGTPI 474 (1019)
Q Consensus 401 ~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s~~~k-al~~l---~~~~RllLTGTPi 474 (1019)
..-|-++||.++...... .....+|++||+||||.. .+.|-... .+..+ .....|.+||||-
T Consensus 72 ~~~i~vMc~at~~~~~~~-----------p~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~~~~i~mTATPP 137 (148)
T PF07652_consen 72 SSIIDVMCHATYGHFLLN-----------PCRLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGEAKVIFMTATPP 137 (148)
T ss_dssp SSSEEEEEHHHHHHHHHT-----------SSCTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS-EEEEEESS-T
T ss_pred CCcccccccHHHHHHhcC-----------cccccCccEEEEeccccC-CHHHHhhheeHHHhhhccCeeEEEEeCCCC
Confidence 456788999987665432 123567999999999985 33333222 22222 2235688999993
No 162
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.38 E-value=3.9e-05 Score=95.77 Aligned_cols=101 Identities=17% Similarity=0.265 Sum_probs=75.7
Q ss_pred CCCceeEecccHHHHHHHHHHHhhcCCe-EEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCccc--CCEEE
Q 001731 676 EGHNVLIFSQTRKMLNLIQESIGSKGYK-FLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTK--ADRVI 752 (1019)
Q Consensus 676 ~g~KvLIFsq~~~~ldiL~~~L~~~gi~-~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~--A~~VI 752 (1019)
.+.++|||..+-.++..+...|...... .+...|.. .+..++++|...... .+++.+....+|+|+++ +..||
T Consensus 478 ~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~---~~~~~l~~f~~~~~~-~~lv~~gsf~EGVD~~g~~l~~vv 553 (654)
T COG1199 478 SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGED---EREELLEKFKASGEG-LILVGGGSFWEGVDFPGDALRLVV 553 (654)
T ss_pred cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCC---cHHHHHHHHHHhcCC-eEEEeeccccCcccCCCCCeeEEE
Confidence 3448999999999999999999876553 44455544 455899999987653 58999999999999976 48899
Q ss_pred EcCCCCC-c-----------------------------hhhhhhhhhhhhhCCCCcEE
Q 001731 753 VVDPAWN-P-----------------------------STDNQSVDRAYRIGQKKDVV 780 (1019)
Q Consensus 753 i~D~~WN-p-----------------------------~~~~QaiGRa~RiGQ~k~V~ 780 (1019)
+.-.|+= | ....|++||+.|--+-+-|.
T Consensus 554 I~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~i 611 (654)
T COG1199 554 IVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVI 611 (654)
T ss_pred EEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEE
Confidence 9877763 2 35679999999954444443
No 163
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.20 E-value=0.00019 Score=88.27 Aligned_cols=114 Identities=17% Similarity=0.142 Sum_probs=91.0
Q ss_pred hhhhHHHHHHHHHhhccCCCceeEecccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCC
Q 001731 659 ISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQV 738 (1019)
Q Consensus 659 ~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~a 738 (1019)
.-.|+.++++-+......|..|||-+.+....+.+.+.|.+.|++...++.... .|..-+-.+.-... .+=++|..
T Consensus 411 ~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~AG~~g--aVTiATNM 486 (822)
T COG0653 411 EEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQAGQPG--AVTIATNM 486 (822)
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhhcCCCC--cccccccc
Confidence 456999999999999999999999999999999999999999999999988766 44433333332222 26678899
Q ss_pred cccccCcccC-----------CEEEEcCCCCCchhhhhhhhhhhhhCCC
Q 001731 739 GGLGLTLTKA-----------DRVIVVDPAWNPSTDNQSVDRAYRIGQK 776 (1019)
Q Consensus 739 gg~GLNLt~A-----------~~VIi~D~~WNp~~~~QaiGRa~RiGQ~ 776 (1019)
+|+|-++.-. =+||--.-+=+-..+.|-.||++|.|-.
T Consensus 487 AGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDp 535 (822)
T COG0653 487 AGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDP 535 (822)
T ss_pred ccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCc
Confidence 9999887422 2577777777888899999999999943
No 164
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.13 E-value=2.8e-05 Score=86.90 Aligned_cols=71 Identities=23% Similarity=0.256 Sum_probs=51.4
Q ss_pred CchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCC----CeEEEEeCc-ccHHHHHHHHHHh
Q 001731 304 LFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLI----KRALVVAPK-TLLSHWIKELTAV 374 (1019)
Q Consensus 304 L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~----~~~LIVvP~-sLl~qW~~E~~k~ 374 (1019)
.||.|.+-+..++..+..+..+|+-.+||+|||+..+..+..+...... .++++++++ +++.|-..++++.
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 4999999888888888888889999999999999877655433332222 278888887 4445555555543
No 165
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.13 E-value=2.8e-05 Score=86.90 Aligned_cols=71 Identities=23% Similarity=0.256 Sum_probs=51.4
Q ss_pred CchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCC----CeEEEEeCc-ccHHHHHHHHHHh
Q 001731 304 LFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLI----KRALVVAPK-TLLSHWIKELTAV 374 (1019)
Q Consensus 304 L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~----~~~LIVvP~-sLl~qW~~E~~k~ 374 (1019)
.||.|.+-+..++..+..+..+|+-.+||+|||+..+..+..+...... .++++++++ +++.|-..++++.
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 4999999888888888888889999999999999877655433332222 278888887 4445555555543
No 166
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.11 E-value=3.3e-05 Score=88.66 Aligned_cols=115 Identities=21% Similarity=0.249 Sum_probs=91.6
Q ss_pred hhhHHHHHHHHHhhccCCCceeEecccHHHHHHHHHHHhh----cCC----eEEEEECCCCHHHHHHHHHhhhcCCCccE
Q 001731 660 SCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGS----KGY----KFLRIDGTTKASDRVKIVNDFQEGDVAPI 731 (1019)
Q Consensus 660 S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~~~L~~----~gi----~~~ridG~~s~~eR~~ii~~F~~~~~~~V 731 (1019)
+.|+.....++.++...|-|+|-||..+...+++...... -|- .+..|.|+.+.++|.++-...-.|+-+
T Consensus 508 ~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~-- 585 (1034)
T KOG4150|consen 508 SSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLC-- 585 (1034)
T ss_pred hhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeee--
Confidence 3455555566666667799999999999987776544332 121 345678999999999998877777644
Q ss_pred EEEecCCcccccCcccCCEEEEcCCCCCchhhhhhhhhhhhhCCC
Q 001731 732 FLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQK 776 (1019)
Q Consensus 732 ~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QaiGRa~RiGQ~ 776 (1019)
-+++|.|...||++..-+.|+++..|.+.+...|..|||+|-...
T Consensus 586 giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~ 630 (1034)
T KOG4150|consen 586 GIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKP 630 (1034)
T ss_pred EEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCC
Confidence 788999999999999999999999999999999999999996543
No 167
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.11 E-value=0.00019 Score=87.68 Aligned_cols=99 Identities=20% Similarity=0.335 Sum_probs=70.6
Q ss_pred cCCCceeEecccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCccc--CCEEE
Q 001731 675 PEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTK--ADRVI 752 (1019)
Q Consensus 675 ~~g~KvLIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~--A~~VI 752 (1019)
..|++|.|||.+..+.++++.++...+.++..++|..+..+ ++.| ..++ +++-|.+..+|+++-. -+.|.
T Consensus 280 ~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d----v~~W---~~~~-VviYT~~itvG~Sf~~~HF~~~f 351 (824)
T PF02399_consen 280 NAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED----VESW---KKYD-VVIYTPVITVGLSFEEKHFDSMF 351 (824)
T ss_pred hCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc----cccc---ccee-EEEEeceEEEEeccchhhceEEE
Confidence 47899999999999999999999999999999998766552 2233 2233 5566688899999954 35555
Q ss_pred Ec--CCCCCch--hhhhhhhhhhhhCCCCcEEEE
Q 001731 753 VV--DPAWNPS--TDNQSVDRAYRIGQKKDVVVY 782 (1019)
Q Consensus 753 i~--D~~WNp~--~~~QaiGRa~RiGQ~k~V~Vy 782 (1019)
.| .-...|. ...|.+||+-.+... ++.||
T Consensus 352 ~yvk~~~~gpd~~s~~Q~lgRvR~l~~~-ei~v~ 384 (824)
T PF02399_consen 352 AYVKPMSYGPDMVSVYQMLGRVRSLLDN-EIYVY 384 (824)
T ss_pred EEecCCCCCCcHHHHHHHHHHHHhhccC-eEEEE
Confidence 55 2223344 368999999887653 34443
No 168
>PF13871 Helicase_C_4: Helicase_C-like
Probab=98.10 E-value=5.6e-06 Score=90.55 Aligned_cols=94 Identities=19% Similarity=0.230 Sum_probs=76.7
Q ss_pred HHHHhhhcCCCccEEEEecCCcccccCccc-------CCEE-EEcCCCCCchhhhhhhhhhhhhCCCCcEEEEEEeeCCC
Q 001731 718 KIVNDFQEGDVAPIFLLTSQVGGLGLTLTK-------ADRV-IVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGT 789 (1019)
Q Consensus 718 ~ii~~F~~~~~~~V~LlST~agg~GLNLt~-------A~~V-Ii~D~~WNp~~~~QaiGRa~RiGQ~k~V~VyrLit~gT 789 (1019)
...+.|++|. ..|+|+ +.+|+.||.|++ -.+| |.+++||+....+|-+||+||.||..+..+..+++.-.
T Consensus 52 ~e~~~F~~g~-k~v~ii-s~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~ 129 (278)
T PF13871_consen 52 AEKQAFMDGE-KDVAII-SDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLP 129 (278)
T ss_pred HHHHHHhCCC-ceEEEE-ecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCH
Confidence 5677999997 455555 499999999985 3344 56999999999999999999999999876666667777
Q ss_pred HHHHHHHHHHHHHhHHHHHhcccc
Q 001731 790 VEEKIYRKQIFKGGLFKTATEHKE 813 (1019)
Q Consensus 790 iEEkI~~rq~~K~~l~~~~~~~~~ 813 (1019)
.|.+......+|..-.++.+.+..
T Consensus 130 gE~Rfas~va~rL~sLgAlt~gdr 153 (278)
T PF13871_consen 130 GERRFASTVARRLESLGALTRGDR 153 (278)
T ss_pred HHHHHHHHHHHHHhhccccccCcc
Confidence 888988888999888888776543
No 169
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.06 E-value=0.0014 Score=82.44 Aligned_cols=46 Identities=24% Similarity=0.240 Sum_probs=34.8
Q ss_pred ccEEEEecCCcccccCcccCCEEEEcCCCCCchhhhhhhhhhhhhCCCC
Q 001731 729 APIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKK 777 (1019)
Q Consensus 729 ~~V~LlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QaiGRa~RiGQ~k 777 (1019)
..+++|+|++...|+|+- .+.+|. ++. .....+|+.||+.|-|+..
T Consensus 838 ~~~i~v~Tqv~E~g~D~d-fd~~~~-~~~-~~~sliQ~aGR~~R~~~~~ 883 (1110)
T TIGR02562 838 HLFIVLATPVEEVGRDHD-YDWAIA-DPS-SMRSIIQLAGRVNRHRLEK 883 (1110)
T ss_pred CCeEEEEeeeEEEEeccc-CCeeee-ccC-cHHHHHHHhhcccccccCC
Confidence 557999999999999985 444443 322 3456899999999999765
No 170
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.90 E-value=0.00047 Score=81.18 Aligned_cols=107 Identities=23% Similarity=0.300 Sum_probs=70.9
Q ss_pred CCceeEecccHHHHHHHHHHHh----hc-----CCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCccc
Q 001731 677 GHNVLIFSQTRKMLNLIQESIG----SK-----GYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTK 747 (1019)
Q Consensus 677 g~KvLIFsq~~~~ldiL~~~L~----~~-----gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~ 747 (1019)
..-+|||-.-...++.....|. .. .+-++-|+.+.+.....++.+- ..++.+-++++|..+...|++.+
T Consensus 473 ~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFeP--tP~gaRKVVLATNIAETSlTIdg 550 (902)
T KOG0923|consen 473 LGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEP--TPPGARKVVLATNIAETSLTIDG 550 (902)
T ss_pred CccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCC--CCCCceeEEEeecchhhceeecC
Confidence 3457888765554444333332 22 3557888999998877766443 23445668889999999999999
Q ss_pred CCEEEEcCCCC------Cc--------------hhhhhhhhhhhhhCCCCcEEEEEEeeCCCH
Q 001731 748 ADRVIVVDPAW------NP--------------STDNQSVDRAYRIGQKKDVVVYRLMTCGTV 790 (1019)
Q Consensus 748 A~~VIi~D~~W------Np--------------~~~~QaiGRa~RiGQ~k~V~VyrLit~gTi 790 (1019)
+..|| ||-+ || +.-.||.|||+|. .+-..|||++.-+.
T Consensus 551 I~yVi--DpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRt---gPGKCfRLYt~~aY 608 (902)
T KOG0923|consen 551 IKYVI--DPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRT---GPGKCFRLYTAWAY 608 (902)
T ss_pred eEEEe--cCccccccCcCCCcCceeEEEeeechhhhhhhccccCCC---CCCceEEeechhhh
Confidence 99987 4432 33 4556777776664 45668999986544
No 171
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.89 E-value=0.00013 Score=77.90 Aligned_cols=67 Identities=27% Similarity=0.397 Sum_probs=46.2
Q ss_pred CCchHHHHHHHHHHHhhcCCCc-eEEEcCCCchHHHHHHHHHHHHh------hcCCCCeEEEEeCc-ccHHHHHHHHHH
Q 001731 303 MLFPHQREGLRWLWSLHCQGKG-GILGDDMGLGKTMQICGFLAGLF------HSRLIKRALVVAPK-TLLSHWIKELTA 373 (1019)
Q Consensus 303 ~L~phQ~egV~~L~~~~~~~~G-gILaDemGLGKTlqaIali~~l~------~~~~~~~~LIVvP~-sLl~qW~~E~~k 373 (1019)
+|-+.|+.+|..+.. ..+ .++.-++|+|||-++.+++..+. .....+++||++|+ ..+.+-...+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~----~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALS----SNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCT----SSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHc----CCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 367899999977655 455 78888999999988777777773 35566799999998 445666555554
No 172
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=97.87 E-value=3.1e-05 Score=89.36 Aligned_cols=100 Identities=25% Similarity=0.284 Sum_probs=80.4
Q ss_pred CCCceeEecccHHHHHHHHHHHhhcCCe-EEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEc
Q 001731 676 EGHNVLIFSQTRKMLNLIQESIGSKGYK-FLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVV 754 (1019)
Q Consensus 676 ~g~KvLIFsq~~~~ldiL~~~L~~~gi~-~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~ 754 (1019)
+|.-|+-||.. -+--+...++++|.. +++|.|+.+++.|.+--..||+..+..-+|++|+|.|+|||| +++|||+|
T Consensus 357 ~GDCvV~FSkk--~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~ 433 (700)
T KOG0953|consen 357 PGDCVVAFSKK--DIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFY 433 (700)
T ss_pred CCCeEEEeehh--hHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEe
Confidence 67777777764 233445666677655 999999999999999999999976666689999999999999 47899998
Q ss_pred CCC---------CCchhhhhhhhhhhhhCCCCc
Q 001731 755 DPA---------WNPSTDNQSVDRAYRIGQKKD 778 (1019)
Q Consensus 755 D~~---------WNp~~~~QaiGRa~RiGQ~k~ 778 (1019)
+.- -......|.-|||+|.|.+-+
T Consensus 434 sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~ 466 (700)
T KOG0953|consen 434 SLIKYSGRETEDITVSQIKQIAGRAGRFGSKYP 466 (700)
T ss_pred ecccCCcccceeccHHHHHHHhhcccccccCCc
Confidence 875 345678899999999987654
No 173
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.86 E-value=0.00058 Score=77.86 Aligned_cols=108 Identities=20% Similarity=0.327 Sum_probs=73.3
Q ss_pred CceeEecccHHHHHHHHHHHhhc---------CCeEEEEECCCCHHHHHHHHHhhh---cCCCccEEEEecCCcccccCc
Q 001731 678 HNVLIFSQTRKMLNLIQESIGSK---------GYKFLRIDGTTKASDRVKIVNDFQ---EGDVAPIFLLTSQVGGLGLTL 745 (1019)
Q Consensus 678 ~KvLIFsq~~~~ldiL~~~L~~~---------gi~~~ridG~~s~~eR~~ii~~F~---~~~~~~V~LlST~agg~GLNL 745 (1019)
.-+|||-...+.++...+.+... .++++-++ +.+.+++.+--. ++...+-+++||..+...|.+
T Consensus 254 GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetslti 329 (699)
T KOG0925|consen 254 GDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTI 329 (699)
T ss_pred CCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeee
Confidence 34888887776655555554422 23455555 444444433222 233456689999999999999
Q ss_pred ccCCEEEEcCCC------CC-----------chhhhhhhhhhhhhCCCCcEEEEEEeeCCCHH
Q 001731 746 TKADRVIVVDPA------WN-----------PSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVE 791 (1019)
Q Consensus 746 t~A~~VIi~D~~------WN-----------p~~~~QaiGRa~RiGQ~k~V~VyrLit~gTiE 791 (1019)
.++-+|| ||. +| |..-.||.-|++|.|.+++-..++|+++...+
T Consensus 330 dgiv~VI--DpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~ 390 (699)
T KOG0925|consen 330 DGIVFVI--DPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFE 390 (699)
T ss_pred ccEEEEe--cCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhh
Confidence 9887776 443 23 56677999999999999999999999976444
No 174
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=0.00022 Score=85.31 Aligned_cols=78 Identities=19% Similarity=0.351 Sum_probs=53.2
Q ss_pred EEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEE--------cC---------CCC-Cchhhhhh
Q 001731 705 LRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIV--------VD---------PAW-NPSTDNQS 766 (1019)
Q Consensus 705 ~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi--------~D---------~~W-Np~~~~Qa 766 (1019)
+-++.-.+.+...++.+.-- ...+.++++|.++...|+++++.+||= || ..| +-+.-.||
T Consensus 608 LPLYSLLs~~~Q~RVF~~~p--~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQR 685 (1172)
T KOG0926|consen 608 LPLYSLLSTEKQMRVFDEVP--KGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQR 685 (1172)
T ss_pred eehhhhcCHHHhhhhccCCC--CCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchh
Confidence 34444455554444433322 235679999999999999999999973 33 335 56677788
Q ss_pred hhhhhhhCCCCcEEEEEEeeC
Q 001731 767 VDRAYRIGQKKDVVVYRLMTC 787 (1019)
Q Consensus 767 iGRa~RiGQ~k~V~VyrLit~ 787 (1019)
.|||+|+| +-+.|||+..
T Consensus 686 AGRAGRtg---pGHcYRLYSS 703 (1172)
T KOG0926|consen 686 AGRAGRTG---PGHCYRLYSS 703 (1172)
T ss_pred ccccCCCC---CCceeehhhh
Confidence 88888866 4568888764
No 175
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.77 E-value=0.00013 Score=77.00 Aligned_cols=149 Identities=19% Similarity=0.203 Sum_probs=78.1
Q ss_pred CchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHHHHHHHHHHhcCCC---cE
Q 001731 304 LFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVGLSA---KI 380 (1019)
Q Consensus 304 L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~qW~~E~~k~~~~~---~v 380 (1019)
+-+.|...+..|.. ..-.++.-+.|+|||+.|++....+...+..++++|+-|..-...+ + -|.|+. +.
T Consensus 5 ~~~~Q~~~~~al~~----~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~---l-GflpG~~~eK~ 76 (205)
T PF02562_consen 5 KNEEQKFALDALLN----NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGED---L-GFLPGDLEEKM 76 (205)
T ss_dssp -SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT--------SS--------
T ss_pred CCHHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccc---c-ccCCCCHHHHH
Confidence 45789999988874 4556777799999999999988888888888899998887533222 1 122221 11
Q ss_pred EEEccc-----ccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcchHHh
Q 001731 381 REYFGT-----CVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRA 455 (1019)
Q Consensus 381 ~~~~g~-----~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s~~~ 455 (1019)
..|... ............+..+.|-+.+...++. ......+||+|||+++. ..+.-
T Consensus 77 ~p~~~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRG-----------------rt~~~~~iIvDEaQN~t--~~~~k 137 (205)
T PF02562_consen 77 EPYLRPIYDALEELFGKEKLEELIQNGKIEIEPLAFIRG-----------------RTFDNAFIIVDEAQNLT--PEELK 137 (205)
T ss_dssp -TTTHHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT-------------------B-SEEEEE-SGGG----HHHHH
T ss_pred HHHHHHHHHHHHHHhChHhHHHHhhcCeEEEEehhhhcC-----------------ccccceEEEEecccCCC--HHHHH
Confidence 001000 0000111233344566677776665542 23346899999999883 34555
Q ss_pred HHhhcCCcccEEEeecCCCCCCHH
Q 001731 456 KSLLEIPSAHRIIISGTPIQNNLK 479 (1019)
Q Consensus 456 kal~~l~~~~RllLTGTPiqN~l~ 479 (1019)
..+.++....+++++|-|.|....
T Consensus 138 ~ilTR~g~~skii~~GD~~Q~D~~ 161 (205)
T PF02562_consen 138 MILTRIGEGSKIIITGDPSQIDLP 161 (205)
T ss_dssp HHHTTB-TT-EEEEEE--------
T ss_pred HHHcccCCCcEEEEecCceeecCC
Confidence 667778888999999999876544
No 176
>PRK10536 hypothetical protein; Provisional
Probab=97.55 E-value=0.00034 Score=75.84 Aligned_cols=147 Identities=19% Similarity=0.143 Sum_probs=86.9
Q ss_pred CchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHHHHHHHHHHhcCCCc---E
Q 001731 304 LFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVGLSAK---I 380 (1019)
Q Consensus 304 L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~qW~~E~~k~~~~~~---v 380 (1019)
.-..|...+.++.. +.-.++.-+.|+|||+.|+++.......+...+++|+-|.--. .+...|.|+.. +
T Consensus 60 ~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~----ge~LGfLPG~~~eK~ 131 (262)
T PRK10536 60 RNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQA----DEDLGFLPGDIAEKF 131 (262)
T ss_pred CCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCc----hhhhCcCCCCHHHHH
Confidence 45688888887765 4466777799999999999888755433445566666554221 12222233211 0
Q ss_pred EEEccc-----ccchhhHHHHHhh--hCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcchH
Q 001731 381 REYFGT-----CVKTRQYELQYVL--QDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQ 453 (1019)
Q Consensus 381 ~~~~g~-----~~~~~~~~~~~~~--~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s~ 453 (1019)
..|... ..........+.+ ....|-|.+...++.. ...-++|||||||++.- .+
T Consensus 132 ~p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGr-----------------tl~~~~vIvDEaqn~~~--~~ 192 (262)
T PRK10536 132 APYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGR-----------------TFENAVVILDEAQNVTA--AQ 192 (262)
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCC-----------------cccCCEEEEechhcCCH--HH
Confidence 000000 0000000112121 2355667776666532 22348999999999843 56
Q ss_pred HhHHhhcCCcccEEEeecCCCCCC
Q 001731 454 RAKSLLEIPSAHRIIISGTPIQNN 477 (1019)
Q Consensus 454 ~~kal~~l~~~~RllLTGTPiqN~ 477 (1019)
....+.++....+++++|-|-|.+
T Consensus 193 ~k~~ltR~g~~sk~v~~GD~~QiD 216 (262)
T PRK10536 193 MKMFLTRLGENVTVIVNGDITQCD 216 (262)
T ss_pred HHHHHhhcCCCCEEEEeCChhhcc
Confidence 666778889999999999997654
No 177
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.29 E-value=0.00096 Score=80.97 Aligned_cols=147 Identities=12% Similarity=0.046 Sum_probs=89.6
Q ss_pred ceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccH-HH-------HHHHH-HHhcCCCcEEEEcccccchhhHH
Q 001731 324 GGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLL-SH-------WIKEL-TAVGLSAKIREYFGTCVKTRQYE 394 (1019)
Q Consensus 324 GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl-~q-------W~~E~-~k~~~~~~v~~~~g~~~~~~~~~ 394 (1019)
++=+-++||+|||.+-+-.|..|++....-+++||||+..+ .- -.+.| ..++.+.+...|...... .. .
T Consensus 76 NiDI~METGTGKTy~YlrtmfeLhk~YG~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~~~-~~-~ 153 (985)
T COG3587 76 NIDILMETGTGKTYTYLRTMFELHKKYGLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDEDI-EK-F 153 (985)
T ss_pred eeeEEEecCCCceeeHHHHHHHHHHHhCceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeechHH-HH-H
Confidence 45567899999999999999999998888899999997433 21 12233 333444444333322111 11 1
Q ss_pred HHHhhhCCCEEEecHHHHHhc---cccccCCCcccCcCC-CCCCC-------ccEEEEcCCcccCCcchHHhHHhhcCCc
Q 001731 395 LQYVLQDKGVLLTTYDIVRNN---SKSLRGSSFISDEAG-DDDAI-------WDYMILDEGHLIKNPSTQRAKSLLEIPS 463 (1019)
Q Consensus 395 ~~~~~~~~dVvItTy~~l~~~---~~~l~~~~~~~~~~~-~~~~~-------wd~VIlDEAH~iKN~~s~~~kal~~l~~ 463 (1019)
.........|++++.+.+.+. ...+.....-..... ..... --.||+||-|++... .+.+.++..+.+
T Consensus 154 ~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~-~k~~~~i~~l~p 232 (985)
T COG3587 154 KFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGD-DKTYGAIKQLNP 232 (985)
T ss_pred hhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhcccc-hHHHHHHHhhCc
Confidence 111223467888888887665 222211110000000 00011 147999999999765 788999999998
Q ss_pred ccEEEeecCC
Q 001731 464 AHRIIISGTP 473 (1019)
Q Consensus 464 ~~RllLTGTP 473 (1019)
...+=-+||-
T Consensus 233 l~ilRfgATf 242 (985)
T COG3587 233 LLILRFGATF 242 (985)
T ss_pred eEEEEecccc
Confidence 8888888883
No 178
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.16 E-value=0.0042 Score=68.26 Aligned_cols=132 Identities=17% Similarity=0.077 Sum_probs=69.5
Q ss_pred ccCCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccH----HHHHHHHHHhc
Q 001731 300 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLL----SHWIKELTAVG 375 (1019)
Q Consensus 300 i~~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl----~qW~~E~~k~~ 375 (1019)
+...+++-|.-|+-.| ..|-|.=..||=|||+++. +++++... ..+++-||+.+..| .+|...|-++.
T Consensus 74 ~g~~p~~vQll~~l~L------~~G~laEm~TGEGKTli~~-l~a~~~AL-~G~~V~vvT~NdyLA~RD~~~~~~~y~~L 145 (266)
T PF07517_consen 74 LGLRPYDVQLLGALAL------HKGRLAEMKTGEGKTLIAA-LPAALNAL-QGKGVHVVTSNDYLAKRDAEEMRPFYEFL 145 (266)
T ss_dssp TS----HHHHHHHHHH------HTTSEEEESTTSHHHHHHH-HHHHHHHT-TSS-EEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred cCCcccHHHHhhhhhc------ccceeEEecCCCCcHHHHH-HHHHHHHH-hcCCcEEEeccHHHhhccHHHHHHHHHHh
Confidence 3445677788777555 3467888999999999764 33333322 23678888888655 34777666643
Q ss_pred CCCcEEEEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCccc
Q 001731 376 LSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLI 447 (1019)
Q Consensus 376 ~~~~v~~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~i 447 (1019)
. ..+...........+ +..-.++|+.+|-..+.-+.-.-. ............++++||||+..+
T Consensus 146 G-lsv~~~~~~~~~~~r----~~~Y~~dI~Y~t~~~~~fD~Lrd~---~~~~~~~~~~r~~~~~ivDEvDs~ 209 (266)
T PF07517_consen 146 G-LSVGIITSDMSSEER----REAYAADIVYGTNSEFGFDYLRDN---LALSKNEQVQRGFDFAIVDEVDSI 209 (266)
T ss_dssp T---EEEEETTTEHHHH----HHHHHSSEEEEEHHHHHHHHHHHT---T-SSGGG--SSSSSEEEECTHHHH
T ss_pred h-hccccCccccCHHHH----HHHHhCcccccccchhhHHHHHHH---HhhccchhccCCCCEEEEeccceE
Confidence 2 333333332221111 112246899998766543211000 000011112456899999999876
No 179
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.09 E-value=0.0026 Score=75.09 Aligned_cols=67 Identities=21% Similarity=0.302 Sum_probs=50.9
Q ss_pred cccCCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCccc-HHHHHHH
Q 001731 299 KIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTL-LSHWIKE 370 (1019)
Q Consensus 299 ~i~~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sL-l~qW~~E 370 (1019)
.+...|-+-|+.++.+.... ..=.++--++|+|||.+..-+|..+...+ +++||.+|+.+ +.|-...
T Consensus 181 ~~~~~ln~SQk~Av~~~~~~---k~l~~I~GPPGTGKT~TlvEiI~qlvk~~--k~VLVcaPSn~AVdNiver 248 (649)
T KOG1803|consen 181 FFNKNLNSSQKAAVSFAINN---KDLLIIHGPPGTGKTRTLVEIISQLVKQK--KRVLVCAPSNVAVDNIVER 248 (649)
T ss_pred cCCccccHHHHHHHHHHhcc---CCceEeeCCCCCCceeeHHHHHHHHHHcC--CeEEEEcCchHHHHHHHHH
Confidence 34556889999999988761 12234555999999999888888887766 79999999965 5676664
No 180
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.91 E-value=0.015 Score=61.32 Aligned_cols=131 Identities=23% Similarity=0.269 Sum_probs=68.8
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHHHHHHHHHHhcCCCcEEE
Q 001731 303 MLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVGLSAKIRE 382 (1019)
Q Consensus 303 ~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~qW~~E~~k~~~~~~v~~ 382 (1019)
+|-+-|++++..++. ...+-.+|.-..|+|||.....+...+...+ .++++++|+.-... ++..-.
T Consensus 1 ~L~~~Q~~a~~~~l~--~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g--~~v~~~apT~~Aa~---~L~~~~------- 66 (196)
T PF13604_consen 1 TLNEEQREAVRAILT--SGDRVSVLQGPAGTGKTTLLKALAEALEAAG--KRVIGLAPTNKAAK---ELREKT------- 66 (196)
T ss_dssp -S-HHHHHHHHHHHH--CTCSEEEEEESTTSTHHHHHHHHHHHHHHTT----EEEEESSHHHHH---HHHHHH-------
T ss_pred CCCHHHHHHHHHHHh--cCCeEEEEEECCCCCHHHHHHHHHHHHHhCC--CeEEEECCcHHHHH---HHHHhh-------
Confidence 377899999999876 1223456777999999986555555554433 78999999854321 122110
Q ss_pred EcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcchHHhHHhhcCC
Q 001731 383 YFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIP 462 (1019)
Q Consensus 383 ~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s~~~kal~~l~ 462 (1019)
++-..|-..+.......... ........++||||||-.+-+ ......+..++
T Consensus 67 --------------------~~~a~Ti~~~l~~~~~~~~~------~~~~~~~~~vliVDEasmv~~--~~~~~ll~~~~ 118 (196)
T PF13604_consen 67 --------------------GIEAQTIHSFLYRIPNGDDE------GRPELPKKDVLIVDEASMVDS--RQLARLLRLAK 118 (196)
T ss_dssp --------------------TS-EEEHHHHTTEECCEECC------SSCC-TSTSEEEESSGGG-BH--HHHHHHHHHS-
T ss_pred --------------------CcchhhHHHHHhcCCccccc------ccccCCcccEEEEecccccCH--HHHHHHHHHHH
Confidence 01111222222111111000 000023457999999999843 33444444454
Q ss_pred c-ccEEEeecCCCC
Q 001731 463 S-AHRIIISGTPIQ 475 (1019)
Q Consensus 463 ~-~~RllLTGTPiq 475 (1019)
. ..+++|.|-|-|
T Consensus 119 ~~~~klilvGD~~Q 132 (196)
T PF13604_consen 119 KSGAKLILVGDPNQ 132 (196)
T ss_dssp T-T-EEEEEE-TTS
T ss_pred hcCCEEEEECCcch
Confidence 3 679999999976
No 181
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.75 E-value=0.0085 Score=74.22 Aligned_cols=125 Identities=14% Similarity=0.060 Sum_probs=83.6
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEEEeCc-ccHHHHHHHHHHhcCCCcEEEEcccccchhhH-HHHHhh-hCCCEEEe
Q 001731 331 MGLGKTMQICGFLAGLFHSRLIKRALVVAPK-TLLSHWIKELTAVGLSAKIREYFGTCVKTRQY-ELQYVL-QDKGVLLT 407 (1019)
Q Consensus 331 mGLGKTlqaIali~~l~~~~~~~~~LIVvP~-sLl~qW~~E~~k~~~~~~v~~~~g~~~~~~~~-~~~~~~-~~~dVvIt 407 (1019)
.|+|||-..+.++...+..+ +.+||++|. ++..|+...|...++...+.++++......++ .+..+. +...|||-
T Consensus 169 ~GSGKTevyl~~i~~~l~~G--k~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViG 246 (665)
T PRK14873 169 PGEDWARRLAAAAAATLRAG--RGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVG 246 (665)
T ss_pred CCCcHHHHHHHHHHHHHHcC--CeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEE
Confidence 49999999888888777654 579999998 78899999999988766777787754443333 333332 34679999
Q ss_pred cHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCccc--CCcchHHhH----H-hh-cCCcccEEEeecCCC
Q 001731 408 TYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLI--KNPSTQRAK----S-LL-EIPSAHRIIISGTPI 474 (1019)
Q Consensus 408 Ty~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~i--KN~~s~~~k----a-l~-~l~~~~RllLTGTPi 474 (1019)
|...+-.- -.+..+|||||=|.- |...+-.+. + ++ ....-..++-|+||.
T Consensus 247 tRSAvFaP-----------------~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPS 304 (665)
T PRK14873 247 TRSAVFAP-----------------VEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHART 304 (665)
T ss_pred cceeEEec-----------------cCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCC
Confidence 97755322 224689999999954 443322211 1 11 223445577799994
No 182
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.67 E-value=0.0036 Score=64.26 Aligned_cols=77 Identities=19% Similarity=0.308 Sum_probs=55.8
Q ss_pred CCCceeEecccHHHHHHHHHHHhhcC----CeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecC--CcccccCccc--
Q 001731 676 EGHNVLIFSQTRKMLNLIQESIGSKG----YKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQ--VGGLGLTLTK-- 747 (1019)
Q Consensus 676 ~g~KvLIFsq~~~~ldiL~~~L~~~g----i~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~--agg~GLNLt~-- 747 (1019)
.+.++|||..+-..++.+...+...+ +.+ ... ....+.++++.|..++.. +|+++. ...+|+|+.+
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v-~~q---~~~~~~~~l~~~~~~~~~--il~~v~~g~~~EGiD~~~~~ 81 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPV-FVQ---GSKSRDELLEEFKRGEGA--ILLAVAGGSFSEGIDFPGDL 81 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCE-EES---TCCHHHHHHHHHCCSSSE--EEEEETTSCCGSSS--ECES
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhccccccee-eec---CcchHHHHHHHHHhccCe--EEEEEecccEEEeecCCCch
Confidence 45789999999999999999987653 322 222 245889999999997655 888887 8999999985
Q ss_pred CCEEEEcCCCC
Q 001731 748 ADRVIVVDPAW 758 (1019)
Q Consensus 748 A~~VIi~D~~W 758 (1019)
+..||+.-.|+
T Consensus 82 ~r~vii~glPf 92 (167)
T PF13307_consen 82 LRAVIIVGLPF 92 (167)
T ss_dssp EEEEEEES---
T ss_pred hheeeecCCCC
Confidence 78899988886
No 183
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.63 E-value=0.0069 Score=69.89 Aligned_cols=47 Identities=21% Similarity=0.273 Sum_probs=34.1
Q ss_pred EEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHHHHHH-HHH
Q 001731 326 ILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIK-ELT 372 (1019)
Q Consensus 326 ILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~qW~~-E~~ 372 (1019)
|+--..|+|||+.++.++..+........++++|+...+.+... .+.
T Consensus 5 ~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~ 52 (352)
T PF09848_consen 5 LITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLA 52 (352)
T ss_pred EEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHh
Confidence 44458999999999998888844445568899999876655444 443
No 184
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.55 E-value=0.0066 Score=70.07 Aligned_cols=61 Identities=21% Similarity=0.225 Sum_probs=44.4
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCC-CCeEEEEeCcc
Q 001731 302 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRL-IKRALVVAPKT 362 (1019)
Q Consensus 302 ~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~-~~~~LIVvP~s 362 (1019)
...||-|..-..-+.+....++.|+|-++.|+|||+.-++++.++....+ ..+-||-|..+
T Consensus 15 ~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRT 76 (755)
T KOG1131|consen 15 DYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRT 76 (755)
T ss_pred cccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCc
Confidence 35899998766656665667788999999999999998887766544433 33556767643
No 185
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=96.49 E-value=0.026 Score=67.08 Aligned_cols=68 Identities=18% Similarity=0.258 Sum_probs=56.0
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCccc-HHHHHHHHHHhc
Q 001731 303 MLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTL-LSHWIKELTAVG 375 (1019)
Q Consensus 303 ~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sL-l~qW~~E~~k~~ 375 (1019)
+|-.-|..||...+. +.=.||--++|+|||+++.++++.+... ..+|+||++|..+ +.|-...|++-+
T Consensus 410 kLN~SQ~~AV~~VL~----rplsLIQGPPGTGKTvtsa~IVyhl~~~-~~~~VLvcApSNiAVDqLaeKIh~tg 478 (935)
T KOG1802|consen 410 KLNASQSNAVKHVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQ-HAGPVLVCAPSNIAVDQLAEKIHKTG 478 (935)
T ss_pred hhchHHHHHHHHHHc----CCceeeecCCCCCceehhHHHHHHHHHh-cCCceEEEcccchhHHHHHHHHHhcC
Confidence 577889999988877 5566888899999999998888888766 5689999999966 677777787654
No 186
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.39 E-value=0.016 Score=71.06 Aligned_cols=47 Identities=19% Similarity=0.251 Sum_probs=38.9
Q ss_pred ccCccccCCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHH
Q 001731 295 MLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICG 341 (1019)
Q Consensus 295 ~lp~~i~~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIa 341 (1019)
.+|-.+-..+||-|+.-...++.......+|+|-.+||+|||+.-|+
T Consensus 13 Gv~V~fP~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLC 59 (945)
T KOG1132|consen 13 GVPVEFPFQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLC 59 (945)
T ss_pred CceeeccCCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHH
Confidence 35666777789999998888888777788899999999999987443
No 187
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.39 E-value=0.023 Score=69.64 Aligned_cols=146 Identities=16% Similarity=0.170 Sum_probs=81.7
Q ss_pred hHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCC---CCeEEEEeCcccHH-HHHHHHHHhcCCCcEE
Q 001731 306 PHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRL---IKRALVVAPKTLLS-HWIKELTAVGLSAKIR 381 (1019)
Q Consensus 306 phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~---~~~~LIVvP~sLl~-qW~~E~~k~~~~~~v~ 381 (1019)
+.|+.++..... +.-.+|.-..|+|||.++..++..+..... ..++++++|+.--. ...+-+.........
T Consensus 148 ~~Qk~A~~~al~----~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~- 222 (586)
T TIGR01447 148 NWQKVAVALALK----SNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAA- 222 (586)
T ss_pred HHHHHHHHHHhh----CCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhccccc-
Confidence 789999887766 567788899999999988777776654322 14789999985443 333323221111000
Q ss_pred EEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcchHHhHHhhcC
Q 001731 382 EYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEI 461 (1019)
Q Consensus 382 ~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s~~~kal~~l 461 (1019)
.. . ......+--.|...+....... ..+. ........+++||||||-.+- .....+.+..+
T Consensus 223 -----~~-----~---~~~~~~~~a~TiHrlLg~~~~~--~~~~--~~~~~~l~~dvlIiDEaSMvd--~~l~~~ll~al 283 (586)
T TIGR01447 223 -----AE-----A---LIAALPSEAVTIHRLLGIKPDT--KRFR--HHERNPLPLDVLVVDEASMVD--LPLMAKLLKAL 283 (586)
T ss_pred -----ch-----h---hhhccccccchhhhhhcccCCc--chhh--hcccCCCcccEEEEcccccCC--HHHHHHHHHhc
Confidence 00 0 0000001111211111100000 0000 001123468999999999884 34556667778
Q ss_pred CcccEEEeecCCCC
Q 001731 462 PSAHRIIISGTPIQ 475 (1019)
Q Consensus 462 ~~~~RllLTGTPiq 475 (1019)
+...|++|.|-|-|
T Consensus 284 ~~~~rlIlvGD~~Q 297 (586)
T TIGR01447 284 PPNTKLILLGDKNQ 297 (586)
T ss_pred CCCCEEEEECChhh
Confidence 88899999999865
No 188
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.32 E-value=0.051 Score=67.46 Aligned_cols=67 Identities=22% Similarity=0.310 Sum_probs=51.2
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCccc-HHHHHHHHHH
Q 001731 302 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTL-LSHWIKELTA 373 (1019)
Q Consensus 302 ~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sL-l~qW~~E~~k 373 (1019)
..|-+.|+.+|.+... .....++--++|+|||.++++++..+...+ .++||++|+.. +.+....+..
T Consensus 156 ~~ln~~Q~~Av~~~l~---~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g--~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALS---SKDLFLIHGPPGTGKTRTLVELIRQLVKRG--LRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhc---CCCeEEEEcCCCCCHHHHHHHHHHHHHHcC--CCEEEEcCcHHHHHHHHHHHHh
Confidence 4588999999988754 224456777999999999888888776654 48999999854 5677666765
No 189
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.24 E-value=0.01 Score=57.56 Aligned_cols=35 Identities=23% Similarity=0.400 Sum_probs=25.5
Q ss_pred cEEEEcCCcccCCcchHHhHHhhcC--CcccEEEeecCC
Q 001731 437 DYMILDEGHLIKNPSTQRAKSLLEI--PSAHRIIISGTP 473 (1019)
Q Consensus 437 d~VIlDEAH~iKN~~s~~~kal~~l--~~~~RllLTGTP 473 (1019)
.+|||||+|++. .......++.+ .....++|+|||
T Consensus 89 ~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 89 VLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp EEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred eEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 589999999984 24444444444 666779999999
No 190
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.17 E-value=0.04 Score=69.38 Aligned_cols=136 Identities=19% Similarity=0.178 Sum_probs=83.0
Q ss_pred ccCCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHHHHHHHHHHhcCCCc
Q 001731 300 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVGLSAK 379 (1019)
Q Consensus 300 i~~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~qW~~E~~k~~~~~~ 379 (1019)
....|-+-|++++..+.. ++-.+|.-..|+|||.++-+++..+...+...++++++|+........+...
T Consensus 320 ~~~~l~~~Q~~Ai~~~~~----~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g------ 389 (720)
T TIGR01448 320 LRKGLSEEQKQALDTAIQ----HKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTG------ 389 (720)
T ss_pred cCCCCCHHHHHHHHHHHh----CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcC------
Confidence 345688999999987754 4567888899999998776666665544333578889998766655444310
Q ss_pred EEEEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcchHHhHHhh
Q 001731 380 IREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLL 459 (1019)
Q Consensus 380 v~~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s~~~kal~ 459 (1019)
.... .+...+.. ....... .........++||||||+.+-. ......+.
T Consensus 390 ------~~a~----Tih~lL~~-------------~~~~~~~------~~~~~~~~~~llIvDEaSMvd~--~~~~~Ll~ 438 (720)
T TIGR01448 390 ------LTAS----TIHRLLGY-------------GPDTFRH------NHLEDPIDCDLLIVDESSMMDT--WLALSLLA 438 (720)
T ss_pred ------Cccc----cHHHHhhc-------------cCCccch------hhhhccccCCEEEEeccccCCH--HHHHHHHH
Confidence 0000 00001100 0000000 0000123468999999999943 34456666
Q ss_pred cCCcccEEEeecCCCCC
Q 001731 460 EIPSAHRIIISGTPIQN 476 (1019)
Q Consensus 460 ~l~~~~RllLTGTPiqN 476 (1019)
.++...|++|-|=|-|-
T Consensus 439 ~~~~~~rlilvGD~~QL 455 (720)
T TIGR01448 439 ALPDHARLLLVGDTDQL 455 (720)
T ss_pred hCCCCCEEEEECccccc
Confidence 77888899999988663
No 191
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=96.03 E-value=0.0034 Score=80.89 Aligned_cols=185 Identities=24% Similarity=0.330 Sum_probs=97.9
Q ss_pred cCCCchHHHHHHHHHHHhhcCCCceEEEcCCCch--HHHHHHHHHHHHhhcCCCCeEEEEeCcccHHHHHHHHHHhcCCC
Q 001731 301 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLG--KTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVGLSA 378 (1019)
Q Consensus 301 ~~~L~phQ~egV~~L~~~~~~~~GgILaDemGLG--KTlqaIali~~l~~~~~~~~~LIVvP~sLl~qW~~E~~k~~~~~ 378 (1019)
...+.+||.....-..... .....+++..|+| ||+.+..+.......+...+.++++|..+..+|..+...+....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 159 (866)
T COG0553 82 RFILIPHQLDIALEVLNEL--ALRVLIADEVGLGDLKTIEAGAILKELLLRGEIKRVLILVPKTLRAQWVVELLEKFNIR 159 (866)
T ss_pred ccccCcchhhhhhhhhhhh--hhchhhcccccccccccccccccchHhhhhhhhccceeccchHHHHHHHHHhhhhcccc
Confidence 3446677776553322211 2237899999999 89988887777777777789999999999999998876642111
Q ss_pred cEEEEcc-cccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCc---cEEEEcCCcccCCcc---
Q 001731 379 KIREYFG-TCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIW---DYMILDEGHLIKNPS--- 451 (1019)
Q Consensus 379 ~v~~~~g-~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~w---d~VIlDEAH~iKN~~--- 451 (1019)
....... ...................++...+.......... .......| +++++||+|.+.+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (866)
T COG0553 160 LAVLDKEGLRYLLKQYDAYNPFSTEDLVLISLDLAKRSDSKRR--------EALLEAEWGERDLLVIDEAHNLGSSEGTR 231 (866)
T ss_pred chhhhhhhhhhhhhhhcccccccchhhhhhhhhhhhhhhhhhh--------hhhhcccccchhhhhcchHhhcccccccc
Confidence 1110000 00000000000000000002222232222111100 11123335 899999999997742
Q ss_pred ------hHHhHHhhcCC--c------ccEEEeecCCCCCCHHHHHHHHHhhcCCCCCC
Q 001731 452 ------TQRAKSLLEIP--S------AHRIIISGTPIQNNLKELWALFNFCCPELLGD 495 (1019)
Q Consensus 452 ------s~~~kal~~l~--~------~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~ 495 (1019)
...+..+..+. . .....+++||......+++....+..+..+..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (866)
T COG0553 232 KLAPLETLEYELLKQLAEKIPSKLLDLKVLLLSATPEQLKEEDLFARLRLLDPLRLAD 289 (866)
T ss_pred cccchhhhHHHHHHHHhhcccccccccchhhhccchhhccccccchhhhhccccchhh
Confidence 22233333221 1 12247899999888888777666665554443
No 192
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=96.02 E-value=0.067 Score=67.24 Aligned_cols=88 Identities=17% Similarity=0.312 Sum_probs=60.9
Q ss_pred HHHHHHHhhccCCCceeEecccHHHHHHHHHHHhhc-CCeEEEEECCCCHHHHHHHHHhhhc----CCCccEEEEecCCc
Q 001731 665 FILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSK-GYKFLRIDGTTKASDRVKIVNDFQE----GDVAPIFLLTSQVG 739 (1019)
Q Consensus 665 ~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~~~L~~~-gi~~~ridG~~s~~eR~~ii~~F~~----~~~~~V~LlST~ag 739 (1019)
.+.+.|..+...+.++|||..+..+++.+...|... ++. +.+.|. ..|.++++.|.. +.+ .+|+++...
T Consensus 522 ~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~--~VL~g~~sf 595 (697)
T PRK11747 522 EMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEG--SVLFGLQSF 595 (697)
T ss_pred HHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCC--eEEEEeccc
Confidence 444444444334445788888888888888888643 333 445664 357888877764 333 367777999
Q ss_pred ccccCccc--CCEEEEcCCCC
Q 001731 740 GLGLTLTK--ADRVIVVDPAW 758 (1019)
Q Consensus 740 g~GLNLt~--A~~VIi~D~~W 758 (1019)
.+|+|+++ ++.||+.-.|+
T Consensus 596 ~EGVD~pGd~l~~vII~kLPF 616 (697)
T PRK11747 596 AEGLDLPGDYLTQVIITKIPF 616 (697)
T ss_pred cccccCCCCceEEEEEEcCCC
Confidence 99999976 78999988776
No 193
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=95.69 E-value=0.041 Score=67.68 Aligned_cols=147 Identities=16% Similarity=0.155 Sum_probs=82.3
Q ss_pred CchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcC--CCCeEEEEeCcccHHHHHHH-HHHhcCCCcE
Q 001731 304 LFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSR--LIKRALVVAPKTLLSHWIKE-LTAVGLSAKI 380 (1019)
Q Consensus 304 L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~--~~~~~LIVvP~sLl~qW~~E-~~k~~~~~~v 380 (1019)
..+.|+.++..... .+-.+|.-.+|+|||.++..++..+.... ...++++++|+.--..=..| +..-......
T Consensus 153 ~~d~Qk~Av~~a~~----~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~ 228 (615)
T PRK10875 153 EVDWQKVAAAVALT----RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPL 228 (615)
T ss_pred CCHHHHHHHHHHhc----CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhcccc
Confidence 34899999976655 56678888999999998888877765532 23478889998544332222 2211100000
Q ss_pred EEEcccccchhhHHHHHhhhCCCEEEec-HHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcchHHhHHhh
Q 001731 381 REYFGTCVKTRQYELQYVLQDKGVLLTT-YDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLL 459 (1019)
Q Consensus 381 ~~~~g~~~~~~~~~~~~~~~~~dVvItT-y~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s~~~kal~ 459 (1019)
... .. .....-..| +..+....... .+. ........+++||||||-.+ .....+..+.
T Consensus 229 ------~~~-----~~---~~~~~~a~TiHrlLg~~~~~~---~~~--~~~~~~l~~dvlIvDEaSMv--d~~lm~~ll~ 287 (615)
T PRK10875 229 ------TDE-----QK---KRIPEEASTLHRLLGAQPGSQ---RLR--YHAGNPLHLDVLVVDEASMV--DLPMMARLID 287 (615)
T ss_pred ------chh-----hh---hcCCCchHHHHHHhCcCCCcc---chh--hccccCCCCCeEEEChHhcc--cHHHHHHHHH
Confidence 000 00 000000111 11111110000 000 01113445799999999998 3445667777
Q ss_pred cCCcccEEEeecCCCC
Q 001731 460 EIPSAHRIIISGTPIQ 475 (1019)
Q Consensus 460 ~l~~~~RllLTGTPiq 475 (1019)
.++...|++|-|-|-|
T Consensus 288 al~~~~rlIlvGD~~Q 303 (615)
T PRK10875 288 ALPPHARVIFLGDRDQ 303 (615)
T ss_pred hcccCCEEEEecchhh
Confidence 8888999999999865
No 194
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=95.66 E-value=0.041 Score=58.86 Aligned_cols=110 Identities=25% Similarity=0.218 Sum_probs=72.8
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHHHHHHHHHHhcC---CCc
Q 001731 303 MLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVGL---SAK 379 (1019)
Q Consensus 303 ~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~qW~~E~~k~~~---~~~ 379 (1019)
.|||-|.+.+..|... ..+.+.++-.-||-|||-.++.+++.++..+ .+=+-+|||.+++.|-..-+..-.. +..
T Consensus 23 liR~~Q~~ia~~mi~~-~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg-~~LvrviVpk~Ll~q~~~~L~~~lg~l~~r~ 100 (229)
T PF12340_consen 23 LIRPVQVEIAREMISP-PSGKNSVMQLNMGEGKTSVIVPMLALALADG-SRLVRVIVPKALLEQMRQMLRSRLGGLLNRR 100 (229)
T ss_pred eeeHHHHHHHHHHhCC-CCCCCeEeeecccCCccchHHHHHHHHHcCC-CcEEEEEcCHHHHHHHHHHHHHHHHHHhCCe
Confidence 4899999999999873 4567889999999999988777777666443 3467789999999887777654321 222
Q ss_pred EEEEcccc-cch-------hhHHHHHhhhCCCEEEecHHHHHh
Q 001731 380 IREYFGTC-VKT-------RQYELQYVLQDKGVLLTTYDIVRN 414 (1019)
Q Consensus 380 v~~~~g~~-~~~-------~~~~~~~~~~~~dVvItTy~~l~~ 414 (1019)
+..+.-.. ... -...........+|+++|++.+.+
T Consensus 101 i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilS 143 (229)
T PF12340_consen 101 IYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILS 143 (229)
T ss_pred eEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHH
Confidence 32222111 110 011112344578999999997643
No 195
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=95.21 E-value=0.11 Score=65.40 Aligned_cols=62 Identities=13% Similarity=0.033 Sum_probs=38.2
Q ss_pred CCchHHHHHHHHHHHhhcCC-----CceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHH
Q 001731 303 MLFPHQREGLRWLWSLHCQG-----KGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLS 365 (1019)
Q Consensus 303 ~L~phQ~egV~~L~~~~~~~-----~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~ 365 (1019)
..||-|.+-...+.+.+... .-+++=.+||+|||+.-+.-+. ++.....++++|=+.+..|+
T Consensus 25 e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai-~~A~~~~k~vVIST~T~~LQ 91 (697)
T PRK11747 25 IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGI-PIARAEKKKLVISTATVALQ 91 (697)
T ss_pred CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHH-HHHHHcCCeEEEEcCCHHHH
Confidence 47899999777777766552 3344555999999986443222 22222335666666664443
No 196
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=94.96 E-value=0.21 Score=48.42 Aligned_cols=42 Identities=26% Similarity=0.186 Sum_probs=25.9
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHH
Q 001731 322 GKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLS 365 (1019)
Q Consensus 322 ~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~ 365 (1019)
+...++.-++|+|||..+-.++..+.. ...+++++.......
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~~~~~~ 60 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFR--PGAPFLYLNASDLLE 60 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhc--CCCCeEEEehhhhhh
Confidence 456678889999999766666555542 224555554444333
No 197
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.91 E-value=0.026 Score=66.52 Aligned_cols=115 Identities=14% Similarity=0.153 Sum_probs=57.9
Q ss_pred EcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeC-cccHHHHHHHHH-----HhcCCCcEEEEcccccchhhH-HHHHhhh
Q 001731 328 GDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP-KTLLSHWIKELT-----AVGLSAKIREYFGTCVKTRQY-ELQYVLQ 400 (1019)
Q Consensus 328 aDemGLGKTlqaIali~~l~~~~~~~~~LIVvP-~sLl~qW~~E~~-----k~~~~~~v~~~~g~~~~~~~~-~~~~~~~ 400 (1019)
-+.||+|||+++.++|..++..+. +.+|+.|- ++++..-..-|. ++.-+..+ .+.+.....+.. .......
T Consensus 3 ~matgsgkt~~ma~lil~~y~kgy-r~flffvnq~nilekt~~nftd~~s~kylf~e~i-~~~d~~i~ikkvn~fsehnd 80 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYKKGY-RNFLFFVNQANILEKTKLNFTDSVSSKYLFSENI-NINDENIEIKKVNNFSEHND 80 (812)
T ss_pred ccccCCChhhHHHHHHHHHHHhch-hhEEEEecchhHHHHHHhhcccchhhhHhhhhhh-hcCCceeeeeeecccCccCC
Confidence 468999999999999998887765 45666555 466654433331 12111111 111111111110 0011112
Q ss_pred CCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCccc
Q 001731 401 DKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLI 447 (1019)
Q Consensus 401 ~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~i 447 (1019)
...|++||-+.+..+....+...... ..+.. .--+.+-||||++
T Consensus 81 ~iei~fttiq~l~~d~~~~ken~itl--edl~~-~klvfl~deahhl 124 (812)
T COG3421 81 AIEIYFTTIQGLFSDFTRAKENAITL--EDLKD-QKLVFLADEAHHL 124 (812)
T ss_pred ceEEEEeehHHHHHHHHhhccccccH--hhHhh-CceEEEechhhhh
Confidence 34688999888766554332211000 00000 0125678999998
No 198
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=94.80 E-value=0.099 Score=58.86 Aligned_cols=57 Identities=21% Similarity=0.200 Sum_probs=35.3
Q ss_pred chHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHH-HHHhhcCCCCeEEEEeCccc
Q 001731 305 FPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFL-AGLFHSRLIKRALVVAPKTL 363 (1019)
Q Consensus 305 ~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali-~~l~~~~~~~~~LIVvP~sL 363 (1019)
--+|+-++.-|.. ..-.=..|.-.-|+|||+-|+|.. ...+..+..++++|--|..-
T Consensus 230 n~eQ~~ALdlLld--~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vp 287 (436)
T COG1875 230 NAEQRVALDLLLD--DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVP 287 (436)
T ss_pred cHHHHHHHHHhcC--CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcC
Confidence 3578888877755 112334677799999998766533 23344555567777666533
No 199
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=94.75 E-value=0.27 Score=61.32 Aligned_cols=155 Identities=23% Similarity=0.242 Sum_probs=91.2
Q ss_pred cccCccccC----CCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCc-ccHHHHH
Q 001731 294 YMLPGKIGN----MLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK-TLLSHWI 368 (1019)
Q Consensus 294 ~~lp~~i~~----~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~-sLl~qW~ 368 (1019)
..++|.+.. .|-.-|+.|+...+. +....-|++ -+|+|||-+...++..+...+ +++|+.+=+ +.+.|-.
T Consensus 656 ~~~~p~~~~~~~~~LN~dQr~A~~k~L~--aedy~LI~G-MPGTGKTTtI~~LIkiL~~~g--kkVLLtsyThsAVDNIL 730 (1100)
T KOG1805|consen 656 KVLIPKIKKIILLRLNNDQRQALLKALA--AEDYALILG-MPGTGKTTTISLLIKILVALG--KKVLLTSYTHSAVDNIL 730 (1100)
T ss_pred cccCchhhHHHHhhcCHHHHHHHHHHHh--ccchheeec-CCCCCchhhHHHHHHHHHHcC--CeEEEEehhhHHHHHHH
Confidence 345555555 888999999966544 333344555 469999988888888877665 789999988 5578877
Q ss_pred HHHHHhcCCCcEEEEcccccchhh----------------HHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCC
Q 001731 369 KELTAVGLSAKIREYFGTCVKTRQ----------------YELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDD 432 (1019)
Q Consensus 369 ~E~~k~~~~~~v~~~~g~~~~~~~----------------~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~ 432 (1019)
.-+..+... ..-.|...+... ..+.+.+....||.+|--.+- ...+.
T Consensus 731 iKL~~~~i~---~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~--------------~plf~ 793 (1100)
T KOG1805|consen 731 IKLKGFGIY---ILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGIN--------------HPLFV 793 (1100)
T ss_pred HHHhccCcc---eeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCC--------------chhhh
Confidence 777655332 111222222111 112233344445555421110 11123
Q ss_pred CCCccEEEEcCCcccCCcchHHhHHhhcCCcccEEEeecCCCC
Q 001731 433 DAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQ 475 (1019)
Q Consensus 433 ~~~wd~VIlDEAH~iKN~~s~~~kal~~l~~~~RllLTGTPiq 475 (1019)
...|||+|||||-.|.-|- .+--+....++.|-|-+.|
T Consensus 794 ~R~FD~cIiDEASQI~lP~-----~LgPL~~s~kFVLVGDh~Q 831 (1100)
T KOG1805|consen 794 NRQFDYCIIDEASQILLPL-----CLGPLSFSNKFVLVGDHYQ 831 (1100)
T ss_pred ccccCEEEEccccccccch-----hhhhhhhcceEEEeccccc
Confidence 4559999999998775432 2333455667777787654
No 200
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=94.47 E-value=0.13 Score=65.50 Aligned_cols=110 Identities=27% Similarity=0.284 Sum_probs=72.6
Q ss_pred hcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccH-----HHHHHHHHHhcCCCcEEEEcccccchhhH
Q 001731 319 HCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLL-----SHWIKELTAVGLSAKIREYFGTCVKTRQY 393 (1019)
Q Consensus 319 ~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl-----~qW~~E~~k~~~~~~v~~~~g~~~~~~~~ 393 (1019)
+..+...++|.+.|+|||+.|= ++.+ +.....++.-++|...+ ..|...|.+. .+..+....|.....
T Consensus 1156 y~~nd~v~vga~~gsgkt~~ae--~a~l-~~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~-~G~~~~~l~ge~s~~--- 1228 (1674)
T KOG0951|consen 1156 YNTNDNVLVGAPNGSGKTACAE--LALL-RPDTIGRAVYIAPLEEIADEQYRDWEKKFSKL-LGLRIVKLTGETSLD--- 1228 (1674)
T ss_pred ecccceEEEecCCCCchhHHHH--HHhc-CCccceEEEEecchHHHHHHHHHHHHHhhccc-cCceEEecCCccccc---
Confidence 4456788999999999996432 2222 24455789999997654 5588888776 444444333322211
Q ss_pred HHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcch
Q 001731 394 ELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPST 452 (1019)
Q Consensus 394 ~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s 452 (1019)
.+.....+|+|.|++.+.... . -...++.|+||.|.+.....
T Consensus 1229 --lkl~~~~~vii~tpe~~d~lq-~--------------iQ~v~l~i~d~lh~igg~~g 1270 (1674)
T KOG0951|consen 1229 --LKLLQKGQVIISTPEQWDLLQ-S--------------IQQVDLFIVDELHLIGGVYG 1270 (1674)
T ss_pred --hHHhhhcceEEechhHHHHHh-h--------------hhhcceEeeehhhhhcccCC
Confidence 123456899999999875542 1 12358999999999976443
No 201
>PRK04296 thymidine kinase; Provisional
Probab=94.46 E-value=0.083 Score=55.42 Aligned_cols=34 Identities=18% Similarity=0.157 Sum_probs=26.1
Q ss_pred eEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeC
Q 001731 325 GILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP 360 (1019)
Q Consensus 325 gILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP 360 (1019)
.++.-+||.|||..++.++..+... .++++|+.|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~--g~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEER--GMKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHc--CCeEEEEec
Confidence 3567799999999888888777554 367888866
No 202
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.06 E-value=0.44 Score=55.55 Aligned_cols=55 Identities=15% Similarity=0.173 Sum_probs=36.4
Q ss_pred ccEEEEcCCcccCCcch---HHhHHhhcCC--cccEEEeecCCCCCCHHHHHHHHHhhcC
Q 001731 436 WDYMILDEGHLIKNPST---QRAKSLLEIP--SAHRIIISGTPIQNNLKELWALFNFCCP 490 (1019)
Q Consensus 436 wd~VIlDEAH~iKN~~s---~~~kal~~l~--~~~RllLTGTPiqN~l~EL~sll~fl~p 490 (1019)
.++||||++.+...... .....+.... ....+.|+||--++.+.+++.-+..+.+
T Consensus 255 ~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~ 314 (388)
T PRK12723 255 FDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSY 314 (388)
T ss_pred CCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCC
Confidence 68999999998754322 2222333332 2455789999988888888877765544
No 203
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=94.02 E-value=0.19 Score=48.15 Aligned_cols=44 Identities=14% Similarity=0.086 Sum_probs=30.4
Q ss_pred CceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHHHHH
Q 001731 323 KGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWI 368 (1019)
Q Consensus 323 ~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~qW~ 368 (1019)
...+|.-++|+|||..+..++..+.... ..++++.+......|.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~ 46 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVL 46 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCH
Confidence 4567888999999988777766554333 3577777776554443
No 204
>PLN03025 replication factor C subunit; Provisional
Probab=94.01 E-value=0.47 Score=53.99 Aligned_cols=41 Identities=24% Similarity=0.300 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhhcCC--CceEEEcCCCchHHHHHHHHHHHHhh
Q 001731 308 QREGLRWLWSLHCQG--KGGILGDDMGLGKTMQICGFLAGLFH 348 (1019)
Q Consensus 308 Q~egV~~L~~~~~~~--~GgILaDemGLGKTlqaIali~~l~~ 348 (1019)
|...+.++......+ ..-|+.-+.|+|||-.+.+++..+..
T Consensus 18 ~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~ 60 (319)
T PLN03025 18 NEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLG 60 (319)
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhc
Confidence 444555554433222 34688889999999988888777653
No 205
>PHA02533 17 large terminase protein; Provisional
Probab=93.84 E-value=0.12 Score=62.59 Aligned_cols=56 Identities=20% Similarity=0.097 Sum_probs=39.4
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCc
Q 001731 302 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK 361 (1019)
Q Consensus 302 ~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~ 361 (1019)
..|.|+|+..+..|.. ++-.++.-+=..|||..+.+++..+........+++++|.
T Consensus 58 f~L~p~Q~~i~~~~~~----~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~ 113 (534)
T PHA02533 58 VQMRDYQKDMLKIMHK----NRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHK 113 (534)
T ss_pred cCCcHHHHHHHHHHhc----CeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 4588999998887743 3444777788899998866555443333444588889995
No 206
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=93.78 E-value=0.32 Score=53.55 Aligned_cols=42 Identities=24% Similarity=0.304 Sum_probs=27.0
Q ss_pred chHHHHHHHHHHHhhcCCCc-eEEEcCCCchHHHHHHHHHHHH
Q 001731 305 FPHQREGLRWLWSLHCQGKG-GILGDDMGLGKTMQICGFLAGL 346 (1019)
Q Consensus 305 ~phQ~egV~~L~~~~~~~~G-gILaDemGLGKTlqaIali~~l 346 (1019)
-+.+..++..+......+.| .+|.-+.|+|||..+-.++..+
T Consensus 25 ~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l 67 (269)
T TIGR03015 25 SKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRL 67 (269)
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhc
Confidence 35566677666544444444 5677899999998666554443
No 207
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=93.57 E-value=0.35 Score=48.20 Aligned_cols=53 Identities=17% Similarity=0.273 Sum_probs=38.2
Q ss_pred EEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCccc--CCEEEEcCCCC
Q 001731 704 FLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTK--ADRVIVVDPAW 758 (1019)
Q Consensus 704 ~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~--A~~VIi~D~~W 758 (1019)
.+.+-| ....+...+++.|...... .+|+++....+|+|+++ +..||+.-.|+
T Consensus 25 ~i~~e~-~~~~~~~~~l~~f~~~~~~-~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 25 LLLVQG-EDGKETGKLLEKYVEACEN-AILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred eEEEeC-CChhHHHHHHHHHHHcCCC-EEEEEccceecceecCCCCeeEEEEEecCC
Confidence 344444 4444678999999875432 47777777999999976 67898888665
No 208
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=92.86 E-value=1.1 Score=52.94 Aligned_cols=111 Identities=20% Similarity=0.214 Sum_probs=85.9
Q ss_pred CCCceeEecccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCc-ccccCcccCCEEEEc
Q 001731 676 EGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVG-GLGLTLTKADRVIVV 754 (1019)
Q Consensus 676 ~g~KvLIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~ag-g~GLNLt~A~~VIi~ 754 (1019)
...++|||.++=--.-.|..+|...++.|+.++--++.++-.++-..|..|. .+++|.|-+.. =.=..+.++.+||+|
T Consensus 299 ~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~-~~iLL~TER~HFfrRy~irGi~~viFY 377 (442)
T PF06862_consen 299 KMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGR-KPILLYTERFHFFRRYRIRGIRHVIFY 377 (442)
T ss_pred CCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCC-ceEEEEEhHHhhhhhceecCCcEEEEE
Confidence 4567999998877777889999999999999999999999999999999997 56777774432 123456789999999
Q ss_pred CCCCCchhhhhhhhhhhhhCC----CCcEEEEEEeeC
Q 001731 755 DPAWNPSTDNQSVDRAYRIGQ----KKDVVVYRLMTC 787 (1019)
Q Consensus 755 D~~WNp~~~~QaiGRa~RiGQ----~k~V~VyrLit~ 787 (1019)
.||-+|.-|...+.-...-.+ ..++.+.-|.+.
T Consensus 378 ~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk 414 (442)
T PF06862_consen 378 GPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSK 414 (442)
T ss_pred CCCCChhHHHHHHhhhcccccccccccCceEEEEecH
Confidence 999999999888866554433 233445555543
No 209
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=92.84 E-value=0.44 Score=52.60 Aligned_cols=26 Identities=19% Similarity=-0.018 Sum_probs=19.6
Q ss_pred ceEEEcCCCchHHHHHHHHHHHHhhc
Q 001731 324 GGILGDDMGLGKTMQICGFLAGLFHS 349 (1019)
Q Consensus 324 GgILaDemGLGKTlqaIali~~l~~~ 349 (1019)
+.+|.-++|+|||..|-++...+...
T Consensus 44 ~vll~GppGtGKTtlA~~ia~~l~~~ 69 (261)
T TIGR02881 44 HMIFKGNPGTGKTTVARILGKLFKEM 69 (261)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 45788899999998877776655443
No 210
>PF13245 AAA_19: Part of AAA domain
Probab=92.79 E-value=0.3 Score=43.28 Aligned_cols=41 Identities=29% Similarity=0.348 Sum_probs=31.5
Q ss_pred eEEEcCCCchHHHHHHHHHHHHhhc--CCCCeEEEEeCcccHH
Q 001731 325 GILGDDMGLGKTMQICGFLAGLFHS--RLIKRALVVAPKTLLS 365 (1019)
Q Consensus 325 gILaDemGLGKTlqaIali~~l~~~--~~~~~~LIVvP~sLl~ 365 (1019)
.++--++|+|||.+++..+..+... ...+++||++|+....
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa 55 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAA 55 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHH
Confidence 4457799999999888888888742 3357999999995543
No 211
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=92.76 E-value=0.33 Score=55.36 Aligned_cols=42 Identities=19% Similarity=0.133 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhhcCCC--ceEEEcCCCchHHHHHHHHHHHHhhc
Q 001731 308 QREGLRWLWSLHCQGK--GGILGDDMGLGKTMQICGFLAGLFHS 349 (1019)
Q Consensus 308 Q~egV~~L~~~~~~~~--GgILaDemGLGKTlqaIali~~l~~~ 349 (1019)
|...+.++......+. ..++.-+.|+|||..+.+++..+...
T Consensus 20 ~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~ 63 (337)
T PRK12402 20 QDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGD 63 (337)
T ss_pred CHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 4445555555444444 56778899999999888888777543
No 212
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.73 E-value=0.97 Score=53.50 Aligned_cols=55 Identities=15% Similarity=0.156 Sum_probs=35.4
Q ss_pred ccEEEEcCCcccCCcchH---HhHHhhc--CCcccEEEeecCCCCCCHHHHHHHHHhhcC
Q 001731 436 WDYMILDEGHLIKNPSTQ---RAKSLLE--IPSAHRIIISGTPIQNNLKELWALFNFCCP 490 (1019)
Q Consensus 436 wd~VIlDEAH~iKN~~s~---~~kal~~--l~~~~RllLTGTPiqN~l~EL~sll~fl~p 490 (1019)
+++||||-+-+....... ....+.. .+....++|++|+-.+.+.+++..+..+.+
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~ 359 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPL 359 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCC
Confidence 699999998765332222 1222221 133456889999988888888888776654
No 213
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=92.66 E-value=0.2 Score=61.28 Aligned_cols=173 Identities=15% Similarity=0.090 Sum_probs=99.2
Q ss_pred ccCccccCCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCc-ccHHHHHHH-HH
Q 001731 295 MLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK-TLLSHWIKE-LT 372 (1019)
Q Consensus 295 ~lp~~i~~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~-sLl~qW~~E-~~ 372 (1019)
..|+.......|||++-...|-... -....+.-..-+|||..++.++.+.....+ .++|+|.|+ .....|.++ |.
T Consensus 8 ~~pG~w~~~~~Py~~eimd~~~~~~--v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P-~~~l~v~Pt~~~a~~~~~~rl~ 84 (557)
T PF05876_consen 8 AEPGPWRTDRTPYLREIMDALSDPS--VREVVVMKSAQVGKTELLLNWIGYSIDQDP-GPMLYVQPTDDAAKDFSKERLD 84 (557)
T ss_pred CCCCCCCCCCChhHHHHHHhcCCcC--ccEEEEEEcchhhHhHHHHhhceEEEEeCC-CCEEEEEEcHHHHHHHHHHHHH
Confidence 4566677789999999877664421 245567779999999977777666655544 799999998 556777644 33
Q ss_pred Hh---cCCCcEEEEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccC-
Q 001731 373 AV---GLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIK- 448 (1019)
Q Consensus 373 k~---~~~~~v~~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iK- 448 (1019)
.. .|..+-.+..............+.+....+.+.....- ..+......+|++||...+-
T Consensus 85 Pmi~~sp~l~~~~~~~~~~~~~~t~~~k~f~gg~l~~~ga~S~----------------~~l~s~~~r~~~~DEvD~~p~ 148 (557)
T PF05876_consen 85 PMIRASPVLRRKLSPSKSRDSGNTILYKRFPGGFLYLVGANSP----------------SNLRSRPARYLLLDEVDRYPD 148 (557)
T ss_pred HHHHhCHHHHHHhCchhhcccCCchhheecCCCEEEEEeCCCC----------------cccccCCcCEEEEechhhccc
Confidence 21 22211111100000111111111122233444332211 12235567999999999982
Q ss_pred ---CcchHHhHH---hhcCCcccEEEeecCCCCCCHHHHHHHHH
Q 001731 449 ---NPSTQRAKS---LLEIPSAHRIIISGTPIQNNLKELWALFN 486 (1019)
Q Consensus 449 ---N~~s~~~ka---l~~l~~~~RllLTGTPiqN~l~EL~sll~ 486 (1019)
+.......+ ...+....++++..||....-.-++.++.
T Consensus 149 ~~~~eGdp~~la~~R~~tf~~~~K~~~~STPt~~~~~~I~~~~~ 192 (557)
T PF05876_consen 149 DVGGEGDPVELAEKRTKTFGSNRKILRISTPTIEGTSRIERLYE 192 (557)
T ss_pred cCccCCCHHHHHHHHHhhhccCcEEEEeCCCCCCCCCHHHHHHH
Confidence 223333333 33445678899999998775555555543
No 214
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=92.63 E-value=0.12 Score=64.72 Aligned_cols=117 Identities=20% Similarity=0.232 Sum_probs=77.2
Q ss_pred hcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCc-ccH----HHHHHHHHHhcCCCcEEEEcccccchhhH
Q 001731 319 HCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK-TLL----SHWIKELTAVGLSAKIREYFGTCVKTRQY 393 (1019)
Q Consensus 319 ~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~-sLl----~qW~~E~~k~~~~~~v~~~~g~~~~~~~~ 393 (1019)
+......++++++|.|||+.+-..+...+...+.+++.+|+|. .|+ ..|..-+. .++.++....|.....-
T Consensus 940 y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~--~~g~k~ie~tgd~~pd~-- 1015 (1230)
T KOG0952|consen 940 YHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDE--LPGIKVIELTGDVTPDV-- 1015 (1230)
T ss_pred eecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcc--cCCceeEeccCccCCCh--
Confidence 3445677899999999999876666666666667899999996 443 55866553 33555655555433221
Q ss_pred HHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCc
Q 001731 394 ELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNP 450 (1019)
Q Consensus 394 ~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~ 450 (1019)
......+++|||++..-.....+....++ ..+..+|+||.|.++..
T Consensus 1016 ---~~v~~~~~~ittpek~dgi~Rsw~~r~~v--------~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1016 ---KAVREADIVITTPEKWDGISRSWQTRKYV--------QSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred ---hheecCceEEcccccccCccccccchhhh--------ccccceeecccccccCC
Confidence 12356789999999876555444333322 12567999999998654
No 215
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=92.57 E-value=0.43 Score=47.63 Aligned_cols=68 Identities=18% Similarity=0.284 Sum_probs=42.5
Q ss_pred HHHHHHHHhhcCC----eEEEEECCCCHHHHHHHHHhhhcCCC-ccEEEEecCC--cccccCccc--CCEEEEcCCCC
Q 001731 690 LNLIQESIGSKGY----KFLRIDGTTKASDRVKIVNDFQEGDV-APIFLLTSQV--GGLGLTLTK--ADRVIVVDPAW 758 (1019)
Q Consensus 690 ldiL~~~L~~~gi----~~~ridG~~s~~eR~~ii~~F~~~~~-~~V~LlST~a--gg~GLNLt~--A~~VIi~D~~W 758 (1019)
++.+...+...+. ..+.+.+.. ..+..++++.|+.... ...+|+++.. .++|||+++ ++.||+.-.|+
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~~~-~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEGKD-SGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEECCC-CchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 4444445544332 234455543 3355789999986432 1236666555 899999976 68899988775
No 216
>KOG0442 consensus Structure-specific endonuclease ERCC1-XPF, catalytic component XPF/ERCC4 [Replication, recombination and repair]
Probab=92.46 E-value=2.8 Score=52.14 Aligned_cols=184 Identities=15% Similarity=0.045 Sum_probs=91.2
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHHHHHHH-HHHhcCCCcEE
Q 001731 303 MLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKE-LTAVGLSAKIR 381 (1019)
Q Consensus 303 ~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~qW~~E-~~k~~~~~~v~ 381 (1019)
.|.+||+..+.-+.. ..||++....|||==-.++.++..+ ...+.|+++=. ...|..+ |........+.
T Consensus 13 ~lL~Ye~qv~~~ll~----~d~~L~V~a~GLsl~~l~~~~l~~~----s~~~sL~LvLN--~~~~ee~~f~s~lk~~~~t 82 (892)
T KOG0442|consen 13 ALLEYEQQVLLELLE----ADGNLLVLAPGLSLLRLVAELLILF----SPPGSLVLVLN--TQEAEEEYFSSKLKEPLVT 82 (892)
T ss_pred ccchhHHHHHHhhhc----ccCceEEecCCcCHHHHHHHHHHHh----CCccceEEEec--CchhhHHHHHHhcCcCCCc
Confidence 388999998877764 5788999999999544333333222 22234444433 3345444 11111111111
Q ss_pred EEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcchHHhHHhhcC
Q 001731 382 EYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEI 461 (1019)
Q Consensus 382 ~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s~~~kal~~l 461 (1019)
.... ...........-.++|+++|.-.+..+.-... +......-|+++-||.+.|..+. +-.++.+
T Consensus 83 ~~~s---~ls~~~R~~~Yl~GGv~fiSsRiLvvDlLt~r----------Ip~~ki~gI~vl~Ah~i~ets~e-aFIlRl~ 148 (892)
T KOG0442|consen 83 EDPS---ELSVNKRRSKYLEGGVFFISSRILVVDLLTGR----------IPTEKITGILVLNAHTISETSQE-AFILRLY 148 (892)
T ss_pred cChh---hcchhhhHHhhhcCCeEEeeeceeeeehhcCc----------cchhHcceEEEechhhhhhcchh-HHHHHHH
Confidence 0000 00111112233467788877766654432111 22344678999999999875433 3333333
Q ss_pred CcccEE----EeecCCCC--CCHHHHHHHHHhhcCCCCCChHHHHHHhhcccccC
Q 001731 462 PSAHRI----IISGTPIQ--NNLKELWALFNFCCPELLGDNKWFKEKYELPILRG 510 (1019)
Q Consensus 462 ~~~~Rl----lLTGTPiq--N~l~EL~sll~fl~p~~lg~~~~F~~~f~~pi~~~ 510 (1019)
+.+.++ +.|--|.+ -.+.-+-..++++.-...--+..|...+..+....
T Consensus 149 R~knk~gfIkAFsd~P~sf~~gf~~l~r~mR~Lfvr~v~l~PRF~~~V~s~L~~~ 203 (892)
T KOG0442|consen 149 RSKNKTGFIKAFSDSPESFVSGFSHLERKMRNLFVRHVLLWPRFHVNVESSLNQL 203 (892)
T ss_pred HHhcCCcceeccccCchhhhccchHHHHHHHHHHhhhheeccchHhHHhhhhccC
Confidence 333332 34444421 22333444555554444444556666666555443
No 217
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=92.19 E-value=0.47 Score=50.04 Aligned_cols=134 Identities=16% Similarity=0.177 Sum_probs=67.7
Q ss_pred EEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHHHHHHHHHHhcCCCcEEEEcccccchhhHHHHHhhhCCCEE
Q 001731 326 ILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVL 405 (1019)
Q Consensus 326 ILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~qW~~E~~k~~~~~~v~~~~g~~~~~~~~~~~~~~~~~dVv 405 (1019)
+++-++|.|||-++.-+++.+... .+++.+|+--.--.-=.++++.|+-...+..+.............
T Consensus 5 ~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~--------- 73 (196)
T PF00448_consen 5 ALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAR--------- 73 (196)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHH---------
T ss_pred EEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHH---------
Confidence 567799999998887777777655 456666665433222233444443333333332211110000000
Q ss_pred EecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcchH---HhHHhhcC-CcccEEEeecCCCCCCHHHH
Q 001731 406 LTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQ---RAKSLLEI-PSAHRIIISGTPIQNNLKEL 481 (1019)
Q Consensus 406 ItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s~---~~kal~~l-~~~~RllLTGTPiqN~l~EL 481 (1019)
+.+.. . ...++|+|++|=+-+.-+.... ..+.+..+ +....++|++|--+..+..+
T Consensus 74 ----~~l~~----~------------~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~ 133 (196)
T PF00448_consen 74 ----EALEK----F------------RKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQA 133 (196)
T ss_dssp ----HHHHH----H------------HHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHH
T ss_pred ----HHHHH----H------------hhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHH
Confidence 01110 0 0223689999998776443322 22222223 44556789999877666666
Q ss_pred HHHHHhhcC
Q 001731 482 WALFNFCCP 490 (1019)
Q Consensus 482 ~sll~fl~p 490 (1019)
......+.+
T Consensus 134 ~~~~~~~~~ 142 (196)
T PF00448_consen 134 LAFYEAFGI 142 (196)
T ss_dssp HHHHHHSST
T ss_pred HHHhhcccC
Confidence 655555544
No 218
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=91.88 E-value=0.59 Score=53.88 Aligned_cols=42 Identities=17% Similarity=0.185 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhcCCCc---eEEEcCCCchHHHHHHHHHHHHhhc
Q 001731 308 QREGLRWLWSLHCQGKG---GILGDDMGLGKTMQICGFLAGLFHS 349 (1019)
Q Consensus 308 Q~egV~~L~~~~~~~~G---gILaDemGLGKTlqaIali~~l~~~ 349 (1019)
|..++..|...+..++. -++.-+.|+|||..|..++..+...
T Consensus 28 h~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~ 72 (351)
T PRK09112 28 HEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSH 72 (351)
T ss_pred cHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 45667777776666653 5677799999999998888887663
No 219
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.83 E-value=0.89 Score=54.17 Aligned_cols=42 Identities=26% Similarity=0.124 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhhcCCC---ceEEEcCCCchHHHHHHHHHHHHhh
Q 001731 307 HQREGLRWLWSLHCQGK---GGILGDDMGLGKTMQICGFLAGLFH 348 (1019)
Q Consensus 307 hQ~egV~~L~~~~~~~~---GgILaDemGLGKTlqaIali~~l~~ 348 (1019)
.|..++..|......++ .-|+.-+.|+|||..|..++..+..
T Consensus 22 GQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 22 HQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 35555555544443443 2488889999999988888777654
No 220
>PRK06526 transposase; Provisional
Probab=91.29 E-value=0.58 Score=51.46 Aligned_cols=52 Identities=19% Similarity=0.316 Sum_probs=34.5
Q ss_pred HHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHHHHHHHHH
Q 001731 311 GLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELT 372 (1019)
Q Consensus 311 gV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~qW~~E~~ 372 (1019)
+..|+-. +.+.+|.-++|+|||..+.++...+...+ .+++++.. .+|..++.
T Consensus 91 ~~~fi~~----~~nlll~Gp~GtGKThLa~al~~~a~~~g--~~v~f~t~----~~l~~~l~ 142 (254)
T PRK06526 91 TLDFVTG----KENVVFLGPPGTGKTHLAIGLGIRACQAG--HRVLFATA----AQWVARLA 142 (254)
T ss_pred cCchhhc----CceEEEEeCCCCchHHHHHHHHHHHHHCC--CchhhhhH----HHHHHHHH
Confidence 3456643 66788888999999999998877665543 34544322 35665554
No 221
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=91.29 E-value=1.4 Score=55.99 Aligned_cols=59 Identities=17% Similarity=0.078 Sum_probs=42.9
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHH
Q 001731 302 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLS 365 (1019)
Q Consensus 302 ~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~ 365 (1019)
..|-+-|+.++..+.. .++-.+|.-..|+|||.++-+++..+... ..++++++|+....
T Consensus 351 ~~Ls~~Q~~Av~~i~~---s~~~~il~G~aGTGKTtll~~i~~~~~~~--g~~V~~~ApTg~Aa 409 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTG---SGDIAVVVGRAGTGKSTMLKAAREAWEAA--GYRVIGAALSGKAA 409 (744)
T ss_pred CCCCHHHHHHHHHHhc---CCCEEEEEecCCCCHHHHHHHHHHHHHhC--CCeEEEEeCcHHHH
Confidence 4688999999987754 23446788899999998766665554433 35789999986543
No 222
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=91.23 E-value=1.7 Score=49.41 Aligned_cols=51 Identities=18% Similarity=0.216 Sum_probs=40.4
Q ss_pred ccCCCchHHHHHHHHHHHhhcCCC---ceEEEcCCCchHHHHHHHHHHHHhhcC
Q 001731 300 IGNMLFPHQREGLRWLWSLHCQGK---GGILGDDMGLGKTMQICGFLAGLFHSR 350 (1019)
Q Consensus 300 i~~~L~phQ~egV~~L~~~~~~~~---GgILaDemGLGKTlqaIali~~l~~~~ 350 (1019)
|...+||+|....+.+...+..++ .-++.-+.|+||+..|.+++..++...
T Consensus 1 ~~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~ 54 (319)
T PRK08769 1 MTSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASG 54 (319)
T ss_pred CCccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCC
Confidence 345799999999988887765543 346777999999999999998887654
No 223
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=90.82 E-value=0.79 Score=51.31 Aligned_cols=27 Identities=19% Similarity=0.044 Sum_probs=21.2
Q ss_pred ceEEEcCCCchHHHHHHHHHHHHhhcC
Q 001731 324 GGILGDDMGLGKTMQICGFLAGLFHSR 350 (1019)
Q Consensus 324 GgILaDemGLGKTlqaIali~~l~~~~ 350 (1019)
+.++.-++|+|||..|.++...++..+
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g 86 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLG 86 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 567778999999998887777766544
No 224
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=90.75 E-value=0.98 Score=51.63 Aligned_cols=48 Identities=19% Similarity=0.186 Sum_probs=35.8
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcC
Q 001731 303 MLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSR 350 (1019)
Q Consensus 303 ~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~ 350 (1019)
.+||+|....+.+...-.-...-++.-+.|.|||..|.+++..+....
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~ 50 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEA 50 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 368999988887777422223346777999999999999998887643
No 225
>PRK08116 hypothetical protein; Validated
Probab=90.01 E-value=2 Score=47.68 Aligned_cols=46 Identities=22% Similarity=0.175 Sum_probs=31.9
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHHHHHH
Q 001731 322 GKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIK 369 (1019)
Q Consensus 322 ~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~qW~~ 369 (1019)
+.|.+|.-++|+|||..+.+++..+... ..+++++.-..++..+..
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~~~~ll~~i~~ 159 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVNFPQLLNRIKS 159 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHHHHHHHHH
Confidence 3467888899999999999888887665 246665554444444433
No 226
>PRK08181 transposase; Validated
Probab=89.97 E-value=2.2 Score=47.38 Aligned_cols=54 Identities=19% Similarity=0.033 Sum_probs=35.4
Q ss_pred CchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEe
Q 001731 304 LFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVA 359 (1019)
Q Consensus 304 L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVv 359 (1019)
+-+.|..++.++-.....+.+.+|.-++|+|||..+.++...+...+ .+++++.
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g--~~v~f~~ 141 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIENG--WRVLFTR 141 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHcC--Cceeeee
Confidence 44567766644422223467789999999999998888877665543 3454443
No 227
>CHL00181 cbbX CbbX; Provisional
Probab=89.71 E-value=1 Score=50.46 Aligned_cols=41 Identities=22% Similarity=0.199 Sum_probs=26.1
Q ss_pred eEEEcCCCchHHHHHHHHHHHHhhcCCC--CeEEEEeCcccHH
Q 001731 325 GILGDDMGLGKTMQICGFLAGLFHSRLI--KRALVVAPKTLLS 365 (1019)
Q Consensus 325 gILaDemGLGKTlqaIali~~l~~~~~~--~~~LIVvP~sLl~ 365 (1019)
.+|.-++|+|||..|-+++..+...+.. ++++.|....++.
T Consensus 62 ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~ 104 (287)
T CHL00181 62 MSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVG 104 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHH
Confidence 4788899999999888877766544332 2444444333333
No 228
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=89.70 E-value=3.2 Score=48.34 Aligned_cols=126 Identities=13% Similarity=0.170 Sum_probs=64.6
Q ss_pred EEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCc----ccHHHHHHHHHHhcCCCcEEEEcccccchhhHHHHHhhhC
Q 001731 326 ILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK----TLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQD 401 (1019)
Q Consensus 326 ILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~----sLl~qW~~E~~k~~~~~~v~~~~g~~~~~~~~~~~~~~~~ 401 (1019)
.|+-++|+|||.++..++..+... ..++.++.-- ..+.||..-..... ..+.
T Consensus 245 ~LVGptGvGKTTTiaKLA~~L~~~--GkkVglI~aDt~RiaAvEQLk~yae~lg--ipv~-------------------- 300 (436)
T PRK11889 245 ALIGPTGVGKTTTLAKMAWQFHGK--KKTVGFITTDHSRIGTVQQLQDYVKTIG--FEVI-------------------- 300 (436)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHc--CCcEEEEecCCcchHHHHHHHHHhhhcC--CcEE--------------------
Confidence 566689999998877776666433 2466666552 24566654322211 1111
Q ss_pred CCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcchHHh---HHhhcC-CcccEEEeecCCCCCC
Q 001731 402 KGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRA---KSLLEI-PSAHRIIISGTPIQNN 477 (1019)
Q Consensus 402 ~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s~~~---kal~~l-~~~~RllLTGTPiqN~ 477 (1019)
+..++..+......+. ....+|+||||-+=+.-+...... +.+... +....+.|+||--.+.
T Consensus 301 ---v~~d~~~L~~aL~~lk-----------~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d 366 (436)
T PRK11889 301 ---AVRDEAAMTRALTYFK-----------EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKD 366 (436)
T ss_pred ---ecCCHHHHHHHHHHHH-----------hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHH
Confidence 1112333332222111 012368999998866543332222 222222 2223355888876677
Q ss_pred HHHHHHHHHhhc
Q 001731 478 LKELWALFNFCC 489 (1019)
Q Consensus 478 l~EL~sll~fl~ 489 (1019)
+.++...|+.+.
T Consensus 367 ~~~i~~~F~~~~ 378 (436)
T PRK11889 367 MIEIITNFKDIH 378 (436)
T ss_pred HHHHHHHhcCCC
Confidence 677766666543
No 229
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=89.62 E-value=2 Score=53.60 Aligned_cols=41 Identities=24% Similarity=0.144 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhhcCC---CceEEEcCCCchHHHHHHHHHHHHhh
Q 001731 308 QREGLRWLWSLHCQG---KGGILGDDMGLGKTMQICGFLAGLFH 348 (1019)
Q Consensus 308 Q~egV~~L~~~~~~~---~GgILaDemGLGKTlqaIali~~l~~ 348 (1019)
|...+..|...+..+ +.-||.-+.|+|||..+..|+..+..
T Consensus 21 Qe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnC 64 (830)
T PRK07003 21 QEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 (830)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 555555555544443 23477889999999988888877754
No 230
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=89.31 E-value=2.8 Score=48.64 Aligned_cols=39 Identities=15% Similarity=0.069 Sum_probs=25.5
Q ss_pred ceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcc
Q 001731 324 GGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKT 362 (1019)
Q Consensus 324 GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~s 362 (1019)
-.+|.-++|.|||.++..++..+.......++.+|+.-.
T Consensus 139 ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~ 177 (374)
T PRK14722 139 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDS 177 (374)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 346677999999998887776654332224566665443
No 231
>PRK14974 cell division protein FtsY; Provisional
Probab=89.12 E-value=3.5 Score=47.25 Aligned_cols=46 Identities=15% Similarity=0.079 Sum_probs=28.4
Q ss_pred EEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCc----ccHHHHHHHHHH
Q 001731 326 ILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK----TLLSHWIKELTA 373 (1019)
Q Consensus 326 ILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~----sLl~qW~~E~~k 373 (1019)
++.-.+|+|||.++..++..+... ..+++++..- ....||......
T Consensus 144 ~~~G~~GvGKTTtiakLA~~l~~~--g~~V~li~~Dt~R~~a~eqL~~~a~~ 193 (336)
T PRK14974 144 VFVGVNGTGKTTTIAKLAYYLKKN--GFSVVIAAGDTFRAGAIEQLEEHAER 193 (336)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHc--CCeEEEecCCcCcHHHHHHHHHHHHH
Confidence 456699999998766666555433 2466666543 334666554444
No 232
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=89.05 E-value=2.2 Score=51.00 Aligned_cols=49 Identities=10% Similarity=-0.007 Sum_probs=33.4
Q ss_pred CceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHHHHHHHH
Q 001731 323 KGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKEL 371 (1019)
Q Consensus 323 ~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~qW~~E~ 371 (1019)
.+.+|.-++|+|||..+-++...+.......+++.|.+..++......+
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l 190 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDIL 190 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHH
Confidence 3467888999999987777766665544455777666655555554444
No 233
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=89.03 E-value=1.8 Score=51.73 Aligned_cols=49 Identities=14% Similarity=0.230 Sum_probs=32.7
Q ss_pred CceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHHHHHHHH
Q 001731 323 KGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKEL 371 (1019)
Q Consensus 323 ~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~qW~~E~ 371 (1019)
...+|.-+.|+|||..+-++...+....+..+++.+....++..+...+
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~ 197 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNAL 197 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHH
Confidence 3467888999999998888777776554445566665555554444443
No 234
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.86 E-value=1.2 Score=56.68 Aligned_cols=41 Identities=27% Similarity=0.195 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhhcCC--Cce-EEEcCCCchHHHHHHHHHHHHhh
Q 001731 308 QREGLRWLWSLHCQG--KGG-ILGDDMGLGKTMQICGFLAGLFH 348 (1019)
Q Consensus 308 Q~egV~~L~~~~~~~--~Gg-ILaDemGLGKTlqaIali~~l~~ 348 (1019)
|...+..|......+ ... |+.-+.|+|||..|-.|+..+..
T Consensus 21 Qe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnc 64 (944)
T PRK14949 21 QSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC 64 (944)
T ss_pred cHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccC
Confidence 444444444333332 344 78889999999988888877754
No 235
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=88.84 E-value=1.9 Score=50.78 Aligned_cols=42 Identities=14% Similarity=0.203 Sum_probs=28.5
Q ss_pred ceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHH
Q 001731 324 GGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLS 365 (1019)
Q Consensus 324 GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~ 365 (1019)
..+|.-+.|+|||..+.++...+.......+++.+....++.
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~ 179 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTN 179 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHH
Confidence 347888999999998888777776554445666664333333
No 236
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=88.81 E-value=2.1 Score=51.80 Aligned_cols=42 Identities=21% Similarity=0.061 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhhcCC---CceEEEcCCCchHHHHHHHHHHHHhhc
Q 001731 308 QREGLRWLWSLHCQG---KGGILGDDMGLGKTMQICGFLAGLFHS 349 (1019)
Q Consensus 308 Q~egV~~L~~~~~~~---~GgILaDemGLGKTlqaIali~~l~~~ 349 (1019)
|...+..|......+ ...|+.-+.|+|||..|-.++..+...
T Consensus 26 q~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 26 QEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 555555554433333 356888899999999888888777543
No 237
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=88.19 E-value=0.86 Score=54.97 Aligned_cols=130 Identities=16% Similarity=0.050 Sum_probs=69.3
Q ss_pred CCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCc-ccHHH----HHHHHHHhcCCCcEEEEcccccchhhHHH
Q 001731 321 QGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK-TLLSH----WIKELTAVGLSAKIREYFGTCVKTRQYEL 395 (1019)
Q Consensus 321 ~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~-sLl~q----W~~E~~k~~~~~~v~~~~g~~~~~~~~~~ 395 (1019)
+.-.+.|. |=--|||...+++|+.++..-..-++..|+-- ++..- ....+.+|+|...+....+
T Consensus 202 QkaTVFLV-PRRHGKTWf~VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~---------- 270 (668)
T PHA03372 202 QKATVFLV-PRRHGKTWFIIPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKD---------- 270 (668)
T ss_pred ccceEEEe-cccCCceehHHHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecC----------
Confidence 33334443 77889999999988888775554578888874 33333 3444567988776532211
Q ss_pred HHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcchHHhHHhhcCCcccEEEeecC
Q 001731 396 QYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGT 472 (1019)
Q Consensus 396 ~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s~~~kal~~l~~~~RllLTGT 472 (1019)
+++..++...+...-.. .-.....++...|+++++||||-|+-..-...--+...+....|.+|-|
T Consensus 271 -------~tI~~s~pg~Kst~~fa----sc~n~NsiRGQ~fnll~VDEA~FI~~~a~~tilgfm~q~~~KiIfISS~ 336 (668)
T PHA03372 271 -------NVISIDHRGAKSTALFA----SCYNTNSIRGQNFHLLLVDEAHFIKKDAFNTILGFLAQNTTKIIFISST 336 (668)
T ss_pred -------cEEEEecCCCcceeeeh----hhccCccccCCCCCEEEEehhhccCHHHHHHhhhhhcccCceEEEEeCC
Confidence 12221211111000000 0001123345669999999999997543322222333344455666644
No 238
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.16 E-value=5.3 Score=49.32 Aligned_cols=25 Identities=20% Similarity=0.122 Sum_probs=20.7
Q ss_pred ceEEEcCCCchHHHHHHHHHHHHhh
Q 001731 324 GGILGDDMGLGKTMQICGFLAGLFH 348 (1019)
Q Consensus 324 GgILaDemGLGKTlqaIali~~l~~ 348 (1019)
.-|+.-+.|+|||..+..++..+..
T Consensus 40 A~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 40 AYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3477889999999998888887765
No 239
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=87.88 E-value=2.5 Score=46.99 Aligned_cols=42 Identities=19% Similarity=0.068 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhhcCC--CceEEEcCCCchHHHHHHHHHHHHhh
Q 001731 307 HQREGLRWLWSLHCQG--KGGILGDDMGLGKTMQICGFLAGLFH 348 (1019)
Q Consensus 307 hQ~egV~~L~~~~~~~--~GgILaDemGLGKTlqaIali~~l~~ 348 (1019)
+|...|+-|......+ ..-++--+.|+|||-++.+|...+..
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 6888888877654441 22355559999999999999988865
No 240
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=87.69 E-value=1.2 Score=54.51 Aligned_cols=146 Identities=14% Similarity=0.196 Sum_probs=76.5
Q ss_pred CceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCc-ccHHHHHHHH----HHhcCCCcEEEEcccccchhhHHHHH
Q 001731 323 KGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK-TLLSHWIKEL----TAVGLSAKIREYFGTCVKTRQYELQY 397 (1019)
Q Consensus 323 ~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~-sLl~qW~~E~----~k~~~~~~v~~~~g~~~~~~~~~~~~ 397 (1019)
+-.+..-+=--|||..+.++++.+........+++++|- ++...-.+++ ++|.+...+....|.. - ..
T Consensus 255 k~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe~-I--~i---- 327 (738)
T PHA03368 255 RATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGET-I--SF---- 327 (738)
T ss_pred cceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCcE-E--EE----
Confidence 445666688899999877777766655555789999996 4444444444 5576654443332210 0 00
Q ss_pred hhhCC---CEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcchHHhHHhhcCCcccEEEeecCC-
Q 001731 398 VLQDK---GVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTP- 473 (1019)
Q Consensus 398 ~~~~~---dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s~~~kal~~l~~~~RllLTGTP- 473 (1019)
....+ .|.+.|- + ....+....++++||||||-|+...-....-+..-.....|.+|-|-
T Consensus 328 ~f~nG~kstI~FaSa---r-------------ntNsiRGqtfDLLIVDEAqFIk~~al~~ilp~l~~~n~k~I~ISS~Ns 391 (738)
T PHA03368 328 SFPDGSRSTIVFASS---H-------------NTNGIRGQDFNLLFVDEANFIRPDAVQTIMGFLNQTNCKIIFVSSTNT 391 (738)
T ss_pred EecCCCccEEEEEec---c-------------CCCCccCCcccEEEEechhhCCHHHHHHHHHHHhccCccEEEEecCCC
Confidence 00001 1222110 0 01123345799999999999965221111111222344556676552
Q ss_pred ----------CCCCHHHHHHHHHhhcCC
Q 001731 474 ----------IQNNLKELWALFNFCCPE 491 (1019)
Q Consensus 474 ----------iqN~l~EL~sll~fl~p~ 491 (1019)
+.|...+|.+.+.|+|++
T Consensus 392 ~~~sTSFL~nLk~a~~~lLNVVsYvCde 419 (738)
T PHA03368 392 GKASTSFLYNLKGAADELLNVVTYICDE 419 (738)
T ss_pred CccchHHHHhhcCchhhheeeEEEEChh
Confidence 334444555555566554
No 241
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=87.51 E-value=3.8 Score=53.25 Aligned_cols=59 Identities=14% Similarity=-0.005 Sum_probs=39.8
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHH
Q 001731 302 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLS 365 (1019)
Q Consensus 302 ~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~ 365 (1019)
..|-+-|+++|..+.. ...-.+|.-..|+|||.+.-+++..+... ..+++.++|+....
T Consensus 345 ~~Ls~eQr~Av~~il~---s~~v~vv~G~AGTGKTT~l~~~~~~~e~~--G~~V~~~ApTGkAA 403 (988)
T PRK13889 345 LVLSGEQADALAHVTD---GRDLGVVVGYAGTGKSAMLGVAREAWEAA--GYEVRGAALSGIAA 403 (988)
T ss_pred CCCCHHHHHHHHHHhc---CCCeEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEecCcHHHH
Confidence 3589999999987754 12235777799999997644433333222 35788899986543
No 242
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.30 E-value=3.2 Score=50.26 Aligned_cols=43 Identities=21% Similarity=0.133 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhhcCCCc--e-EEEcCCCchHHHHHHHHHHHHhhcC
Q 001731 308 QREGLRWLWSLHCQGKG--G-ILGDDMGLGKTMQICGFLAGLFHSR 350 (1019)
Q Consensus 308 Q~egV~~L~~~~~~~~G--g-ILaDemGLGKTlqaIali~~l~~~~ 350 (1019)
|..++..|......++- . |+.-+.|+|||..|.+++..+...+
T Consensus 19 q~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~ 64 (504)
T PRK14963 19 QEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSG 64 (504)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 55556656554444432 3 7888999999999888888776543
No 243
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=87.17 E-value=3.1 Score=44.42 Aligned_cols=27 Identities=19% Similarity=0.028 Sum_probs=20.1
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHHhh
Q 001731 322 GKGGILGDDMGLGKTMQICGFLAGLFH 348 (1019)
Q Consensus 322 ~~GgILaDemGLGKTlqaIali~~l~~ 348 (1019)
+...+|.-+.|+|||..+.++......
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~~ 64 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEE 64 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 345677789999999888777665543
No 244
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.03 E-value=3.1 Score=48.29 Aligned_cols=40 Identities=20% Similarity=0.138 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhcCC--Cce-EEEcCCCchHHHHHHHHHHHHh
Q 001731 308 QREGLRWLWSLHCQG--KGG-ILGDDMGLGKTMQICGFLAGLF 347 (1019)
Q Consensus 308 Q~egV~~L~~~~~~~--~Gg-ILaDemGLGKTlqaIali~~l~ 347 (1019)
|...+..+......+ ..+ |+.-+.|+|||..|-+++..+.
T Consensus 21 q~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 21 QKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 556666555544443 233 7888999999998888877765
No 245
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=86.66 E-value=2.3 Score=46.73 Aligned_cols=50 Identities=22% Similarity=0.215 Sum_probs=38.4
Q ss_pred cCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHHHHHHHH
Q 001731 320 CQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKEL 371 (1019)
Q Consensus 320 ~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~qW~~E~ 371 (1019)
.++.|.+|.-++|.|||..++|+...+... ..+++++.-+.++.+++..+
T Consensus 103 ~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~--g~sv~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 103 ERGENLVLLGPPGVGKTHLAIAIGNELLKA--GISVLFITAPDLLSKLKAAF 152 (254)
T ss_pred ccCCcEEEECCCCCcHHHHHHHHHHHHHHc--CCeEEEEEHHHHHHHHHHHH
Confidence 367888999999999999999988888733 35777777667776666554
No 246
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=86.32 E-value=1.4 Score=49.11 Aligned_cols=63 Identities=21% Similarity=0.135 Sum_probs=42.3
Q ss_pred CchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcC--CCCeEEEEeCcccH-HHHHHHHH
Q 001731 304 LFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSR--LIKRALVVAPKTLL-SHWIKELT 372 (1019)
Q Consensus 304 L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~--~~~~~LIVvP~sLl-~qW~~E~~ 372 (1019)
|-+-|..+|.+ . .+..++-...|+|||.+++.-+..+...+ ...++|+|+++... ..-...+.
T Consensus 1 l~~eQ~~~i~~-~-----~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~ 66 (315)
T PF00580_consen 1 LTDEQRRIIRS-T-----EGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIR 66 (315)
T ss_dssp S-HHHHHHHHS-------SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC-C-----CCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHH
Confidence 45678888876 2 34556666899999999888877776655 34589999998553 33333343
No 247
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=86.20 E-value=4.7 Score=41.12 Aligned_cols=47 Identities=23% Similarity=0.186 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhhcCC--Cc-eEEEcCCCchHHHHHHHHHHHHhhcCCCCe
Q 001731 308 QREGLRWLWSLHCQG--KG-GILGDDMGLGKTMQICGFLAGLFHSRLIKR 354 (1019)
Q Consensus 308 Q~egV~~L~~~~~~~--~G-gILaDemGLGKTlqaIali~~l~~~~~~~~ 354 (1019)
|.+.+..|......+ .. -|+.-+.|.||+-.|.+++..++.......
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~ 51 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNED 51 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCC
Confidence 566666676665554 23 377779999999999999998877655433
No 248
>PRK08084 DNA replication initiation factor; Provisional
Probab=86.15 E-value=4.9 Score=43.59 Aligned_cols=25 Identities=20% Similarity=0.032 Sum_probs=18.7
Q ss_pred CceEEEcCCCchHHHHHHHHHHHHh
Q 001731 323 KGGILGDDMGLGKTMQICGFLAGLF 347 (1019)
Q Consensus 323 ~GgILaDemGLGKTlqaIali~~l~ 347 (1019)
...+|.-+.|+|||-.+.+++..+.
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~ 70 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELS 70 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4568888999999987666665544
No 249
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.07 E-value=4.1 Score=50.60 Aligned_cols=43 Identities=16% Similarity=-0.014 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhhcCCC---ceEEEcCCCchHHHHHHHHHHHHhhc
Q 001731 307 HQREGLRWLWSLHCQGK---GGILGDDMGLGKTMQICGFLAGLFHS 349 (1019)
Q Consensus 307 hQ~egV~~L~~~~~~~~---GgILaDemGLGKTlqaIali~~l~~~ 349 (1019)
.|...+..|......++ .-|+.-+.|+|||..|.+++..+...
T Consensus 20 Gq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~ 65 (620)
T PRK14948 20 GQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCL 65 (620)
T ss_pred ChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCC
Confidence 35555666655544443 33788899999999999888887653
No 250
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=86.05 E-value=4.6 Score=46.31 Aligned_cols=48 Identities=17% Similarity=0.196 Sum_probs=37.8
Q ss_pred CCchHHHHHHHHHHHhhcCCC---ceEEEcCCCchHHHHHHHHHHHHhhcC
Q 001731 303 MLFPHQREGLRWLWSLHCQGK---GGILGDDMGLGKTMQICGFLAGLFHSR 350 (1019)
Q Consensus 303 ~L~phQ~egV~~L~~~~~~~~---GgILaDemGLGKTlqaIali~~l~~~~ 350 (1019)
.+||+|....+.+...+..++ .-++.-+.|+||+..|.+++..+....
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~ 52 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQ 52 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 378999888888887765553 335777999999999999999887643
No 251
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.01 E-value=4 Score=49.03 Aligned_cols=24 Identities=25% Similarity=0.122 Sum_probs=19.5
Q ss_pred eEEEcCCCchHHHHHHHHHHHHhh
Q 001731 325 GILGDDMGLGKTMQICGFLAGLFH 348 (1019)
Q Consensus 325 gILaDemGLGKTlqaIali~~l~~ 348 (1019)
-|+.-+.|+|||..|-+++..+..
T Consensus 39 ~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 39 YIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcc
Confidence 488889999999888877776643
No 252
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=85.98 E-value=4.8 Score=46.22 Aligned_cols=47 Identities=23% Similarity=0.318 Sum_probs=34.8
Q ss_pred CchHHHHHHHHHHHhhcCCC-ceEEEcCCCchHHHHHHHHHHHHhhcC
Q 001731 304 LFPHQREGLRWLWSLHCQGK-GGILGDDMGLGKTMQICGFLAGLFHSR 350 (1019)
Q Consensus 304 L~phQ~egV~~L~~~~~~~~-GgILaDemGLGKTlqaIali~~l~~~~ 350 (1019)
+||+|...-+.+.....+-. .-++.-+.|.|||..|..++..+....
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~ 49 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLLCET 49 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 58888887777776533323 345677999999999999998887654
No 253
>PRK05580 primosome assembly protein PriA; Validated
Probab=85.89 E-value=3.9 Score=51.54 Aligned_cols=95 Identities=13% Similarity=0.217 Sum_probs=73.3
Q ss_pred hhhhHHHHHHHHHhhccCCCceeEecccHHHHHHHHHHHhhc-CCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecC
Q 001731 659 ISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSK-GYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQ 737 (1019)
Q Consensus 659 ~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~~~L~~~-gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~ 737 (1019)
.|+|....+.++......|.++||.+..+.....+.+.|... |..+..++|+++..+|.+...+...+.. . ++++|+
T Consensus 172 GSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~-~-IVVgTr 249 (679)
T PRK05580 172 GSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEA-K-VVIGAR 249 (679)
T ss_pred CChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCC-C-EEEecc
Confidence 588998888888777777899999999999988888888764 7889999999999999988888877763 3 555655
Q ss_pred CcccccCcccCCEEEEcCC
Q 001731 738 VGGLGLTLTKADRVIVVDP 756 (1019)
Q Consensus 738 agg~GLNLt~A~~VIi~D~ 756 (1019)
.. .=+.+.....||+-+-
T Consensus 250 sa-l~~p~~~l~liVvDEe 267 (679)
T PRK05580 250 SA-LFLPFKNLGLIIVDEE 267 (679)
T ss_pred HH-hcccccCCCEEEEECC
Confidence 32 2244566677776543
No 254
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.59 E-value=6.3 Score=48.80 Aligned_cols=41 Identities=24% Similarity=0.099 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhhcCC---CceEEEcCCCchHHHHHHHHHHHHhh
Q 001731 308 QREGLRWLWSLHCQG---KGGILGDDMGLGKTMQICGFLAGLFH 348 (1019)
Q Consensus 308 Q~egV~~L~~~~~~~---~GgILaDemGLGKTlqaIali~~l~~ 348 (1019)
|...++.|......+ ...|+.-+.|+|||..|.+++..+..
T Consensus 20 Qe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 20 QNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 344444444433333 34488899999999988888777654
No 255
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=85.43 E-value=4.5 Score=46.15 Aligned_cols=47 Identities=21% Similarity=0.282 Sum_probs=36.4
Q ss_pred CchHHHHHHHHHHHhhcCCC--ce-EEEcCCCchHHHHHHHHHHHHhhcC
Q 001731 304 LFPHQREGLRWLWSLHCQGK--GG-ILGDDMGLGKTMQICGFLAGLFHSR 350 (1019)
Q Consensus 304 L~phQ~egV~~L~~~~~~~~--Gg-ILaDemGLGKTlqaIali~~l~~~~ 350 (1019)
+||+|...-+.+...+..++ .+ |+.-+.|+||+..|.+++..+....
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~ 52 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQT 52 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCC
Confidence 57888888777777665543 34 5677999999999999998887644
No 256
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=85.22 E-value=5.4 Score=49.57 Aligned_cols=42 Identities=24% Similarity=0.152 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhcCCC--c-eEEEcCCCchHHHHHHHHHHHHhhc
Q 001731 308 QREGLRWLWSLHCQGK--G-GILGDDMGLGKTMQICGFLAGLFHS 349 (1019)
Q Consensus 308 Q~egV~~L~~~~~~~~--G-gILaDemGLGKTlqaIali~~l~~~ 349 (1019)
|...+..|......++ . -|+.-+.|+|||..|-.++..+...
T Consensus 21 Qe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 21 QEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 4444444444443332 3 4788899999999888888777653
No 257
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.10 E-value=7.8 Score=47.07 Aligned_cols=95 Identities=14% Similarity=0.233 Sum_probs=72.7
Q ss_pred chhhhHHHHHHHHHhhccCCCceeEecccHHHHHHHHHHHhhc-CCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEec
Q 001731 658 NISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSK-GYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTS 736 (1019)
Q Consensus 658 ~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~~~L~~~-gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST 736 (1019)
..|+|....+.++......|.++||.+..+.....+...|... |..+..++|+++..+|.+...+-..+.. . ++++|
T Consensus 6 TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~-~-IVVGT 83 (505)
T TIGR00595 6 TGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEI-L-VVIGT 83 (505)
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCC-C-EEECC
Confidence 3689999988888888888999999999999888888888654 7889999999999999888887777653 3 55565
Q ss_pred CCcccccCcccCCEEEEcC
Q 001731 737 QVGGLGLTLTKADRVIVVD 755 (1019)
Q Consensus 737 ~agg~GLNLt~A~~VIi~D 755 (1019)
...- =+-+.....||+=+
T Consensus 84 rsal-f~p~~~l~lIIVDE 101 (505)
T TIGR00595 84 RSAL-FLPFKNLGLIIVDE 101 (505)
T ss_pred hHHH-cCcccCCCEEEEEC
Confidence 5421 23455666666644
No 258
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.07 E-value=8.9 Score=46.59 Aligned_cols=42 Identities=21% Similarity=0.065 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhhcCC--Cce-EEEcCCCchHHHHHHHHHHHHhhc
Q 001731 308 QREGLRWLWSLHCQG--KGG-ILGDDMGLGKTMQICGFLAGLFHS 349 (1019)
Q Consensus 308 Q~egV~~L~~~~~~~--~Gg-ILaDemGLGKTlqaIali~~l~~~ 349 (1019)
|...+..|......+ ..+ |+.-+.|+|||..|-.++..+...
T Consensus 21 q~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 21 QAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred CHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 555555555544333 334 778899999999888888777543
No 259
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=84.88 E-value=3.9 Score=49.64 Aligned_cols=42 Identities=19% Similarity=0.071 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhhcCCC--ce-EEEcCCCchHHHHHHHHHHHHhhc
Q 001731 308 QREGLRWLWSLHCQGK--GG-ILGDDMGLGKTMQICGFLAGLFHS 349 (1019)
Q Consensus 308 Q~egV~~L~~~~~~~~--Gg-ILaDemGLGKTlqaIali~~l~~~ 349 (1019)
|...+..|......++ .. |+.-+.|+|||-.|-+++..+...
T Consensus 19 qe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~ 63 (535)
T PRK08451 19 QESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCE 63 (535)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCC
Confidence 4444555544443442 23 788899999999888888877643
No 260
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=84.78 E-value=9.9 Score=45.37 Aligned_cols=40 Identities=15% Similarity=0.159 Sum_probs=28.6
Q ss_pred ceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCccc
Q 001731 324 GGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTL 363 (1019)
Q Consensus 324 GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sL 363 (1019)
..+|.-++|+|||..+-++...+....+..+++.+....+
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f 171 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF 171 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH
Confidence 4678889999999988877777665554456666654433
No 261
>PRK08727 hypothetical protein; Validated
Probab=84.70 E-value=4.1 Score=44.18 Aligned_cols=26 Identities=23% Similarity=0.098 Sum_probs=19.9
Q ss_pred ceEEEcCCCchHHHHHHHHHHHHhhc
Q 001731 324 GGILGDDMGLGKTMQICGFLAGLFHS 349 (1019)
Q Consensus 324 GgILaDemGLGKTlqaIali~~l~~~ 349 (1019)
..+|.-++|+|||-.+.+++..+...
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~ 68 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQA 68 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 36888899999998777777665443
No 262
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=84.62 E-value=6.1 Score=43.03 Aligned_cols=70 Identities=23% Similarity=0.182 Sum_probs=37.1
Q ss_pred ccCCCchHHHHHHHHHHHhhcCCC-ceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccH------HHHHHHHH
Q 001731 300 IGNMLFPHQREGLRWLWSLHCQGK-GGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLL------SHWIKELT 372 (1019)
Q Consensus 300 i~~~L~phQ~egV~~L~~~~~~~~-GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl------~qW~~E~~ 372 (1019)
+....-+|+...+.-.+. ...+. -+.+.-++|+|||+.+=++++.+- ....++|+.|+..+ .-|..++.
T Consensus 29 ~~~~~a~h~e~l~~l~~~-i~d~qg~~~vtGevGsGKTv~~Ral~~s~~---~d~~~~v~i~~~~~s~~~~~~ai~~~l~ 104 (269)
T COG3267 29 LDYWAADHNEALLMLHAA-IADGQGILAVTGEVGSGKTVLRRALLASLN---EDQVAVVVIDKPTLSDATLLEAIVADLE 104 (269)
T ss_pred hhhhhhhhhHHHHHHHHH-HhcCCceEEEEecCCCchhHHHHHHHHhcC---CCceEEEEecCcchhHHHHHHHHHHHhc
Confidence 333444555443322222 22333 234556999999997664444432 22345567776543 44777765
Q ss_pred H
Q 001731 373 A 373 (1019)
Q Consensus 373 k 373 (1019)
.
T Consensus 105 ~ 105 (269)
T COG3267 105 S 105 (269)
T ss_pred c
Confidence 3
No 263
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=84.40 E-value=3.8 Score=48.10 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=20.9
Q ss_pred ceEEEcCCCchHHHHHHHHHHHHhhc
Q 001731 324 GGILGDDMGLGKTMQICGFLAGLFHS 349 (1019)
Q Consensus 324 GgILaDemGLGKTlqaIali~~l~~~ 349 (1019)
.-|+.-+.|+|||..|.+++..+...
T Consensus 38 a~Lf~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 38 AWLFTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 34677799999999999888777654
No 264
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=84.37 E-value=9.3 Score=44.07 Aligned_cols=44 Identities=18% Similarity=-0.009 Sum_probs=29.6
Q ss_pred chHHHHHHHHHHHhhc---CCCceEEEcCCCchHHHHHHHHHHHHhh
Q 001731 305 FPHQREGLRWLWSLHC---QGKGGILGDDMGLGKTMQICGFLAGLFH 348 (1019)
Q Consensus 305 ~phQ~egV~~L~~~~~---~~~GgILaDemGLGKTlqaIali~~l~~ 348 (1019)
+..|.+.+...+.... ...+.+|.-+.|+|||.++-.++..+..
T Consensus 20 Re~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 20 RDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred cHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6677776655544322 2245677889999999988777776643
No 265
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=84.35 E-value=7.7 Score=43.80 Aligned_cols=40 Identities=13% Similarity=0.077 Sum_probs=24.8
Q ss_pred ccEEEEcCCcccCCcch--HHhHHhhcCCcccEEEeecCCCC
Q 001731 436 WDYMILDEGHLIKNPST--QRAKSLLEIPSAHRIIISGTPIQ 475 (1019)
Q Consensus 436 wd~VIlDEAH~iKN~~s--~~~kal~~l~~~~RllLTGTPiq 475 (1019)
.++||+||+|.+..... .....+...+...++++|++...
T Consensus 101 ~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~ 142 (316)
T PHA02544 101 GKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKN 142 (316)
T ss_pred CeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChh
Confidence 47899999999833221 12222344456667888886543
No 266
>PF13173 AAA_14: AAA domain
Probab=84.34 E-value=6.3 Score=38.24 Aligned_cols=38 Identities=16% Similarity=0.214 Sum_probs=25.7
Q ss_pred ccEEEEcCCcccCCcchHHhHHhhcCCcccEEEeecCCC
Q 001731 436 WDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPI 474 (1019)
Q Consensus 436 wd~VIlDEAH~iKN~~s~~~kal~~l~~~~RllLTGTPi 474 (1019)
-.+|++||+|++.+.....-..+.. ....++++||+-.
T Consensus 62 ~~~i~iDEiq~~~~~~~~lk~l~d~-~~~~~ii~tgS~~ 99 (128)
T PF13173_consen 62 KKYIFIDEIQYLPDWEDALKFLVDN-GPNIKIILTGSSS 99 (128)
T ss_pred CcEEEEehhhhhccHHHHHHHHHHh-ccCceEEEEccch
Confidence 3689999999997644333333332 2456899999864
No 267
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=84.05 E-value=6.2 Score=48.55 Aligned_cols=48 Identities=17% Similarity=0.110 Sum_probs=31.6
Q ss_pred ceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHHHHHHHH
Q 001731 324 GGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKEL 371 (1019)
Q Consensus 324 GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~qW~~E~ 371 (1019)
..+|.-+.|+|||..+.+++..+.......+++.+.-..++..+...+
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al 363 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSI 363 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHH
Confidence 367888999999998777777665443345666665555555544433
No 268
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.91 E-value=9.7 Score=45.87 Aligned_cols=41 Identities=22% Similarity=0.050 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhhcCC---CceEEEcCCCchHHHHHHHHHHHHhh
Q 001731 308 QREGLRWLWSLHCQG---KGGILGDDMGLGKTMQICGFLAGLFH 348 (1019)
Q Consensus 308 Q~egV~~L~~~~~~~---~GgILaDemGLGKTlqaIali~~l~~ 348 (1019)
|...++.|...+..+ ..-|+.-+.|+|||-.|..++..+..
T Consensus 18 Qe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC 61 (491)
T PRK14964 18 QDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNC 61 (491)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcC
Confidence 444444444433333 35678889999999888877766654
No 269
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=83.89 E-value=2.4 Score=47.87 Aligned_cols=52 Identities=19% Similarity=0.175 Sum_probs=37.0
Q ss_pred CchHHHHHHHHHHHhhc-CCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeC
Q 001731 304 LFPHQREGLRWLWSLHC-QGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP 360 (1019)
Q Consensus 304 L~phQ~egV~~L~~~~~-~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP 360 (1019)
.-+-|..-+..+.+... .|.| +-|+|||+.+.+........+..+++|.-=|
T Consensus 129 kt~~Q~~y~eai~~~di~fGiG-----pAGTGKTyLava~av~al~~~~v~rIiLtRP 181 (348)
T COG1702 129 KTPGQNMYPEAIEEHDIVFGIG-----PAGTGKTYLAVAKAVDALGAGQVRRIILTRP 181 (348)
T ss_pred cChhHHHHHHHHHhcCeeeeec-----ccccCChhhhHHhHhhhhhhcccceeeecCc
Confidence 34678887777766321 1222 8999999998888888877777777777666
No 270
>PF15328 GCOM2: Putative GRINL1B complex locus protein 2
Probab=83.88 E-value=0.75 Score=49.52 Aligned_cols=34 Identities=32% Similarity=0.574 Sum_probs=28.9
Q ss_pred HHHhcccceecccCCCchhHHHHHHHHHHHHHHh
Q 001731 956 SQLISNKVTVERLPDKGTKLQKQIAELNSELNKI 989 (1019)
Q Consensus 956 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 989 (1019)
-.+|+|+.++.+|||+|.||+.=.++|..+|+.-
T Consensus 6 ~klL~nkkfi~kLpDKGkKI~~~~~kL~~ai~~r 39 (223)
T PF15328_consen 6 EKLLRNKKFICKLPDKGKKIQDFVEKLKAAIAER 39 (223)
T ss_pred HHHhcchhhhhcCCchhHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999998888777776654
No 271
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=83.71 E-value=4.6 Score=50.93 Aligned_cols=100 Identities=18% Similarity=0.181 Sum_probs=72.2
Q ss_pred cchhhhHHHHHHHHHhhccCCCceeEecccHHHHHHHHHHHh----hcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEE
Q 001731 657 DNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIG----SKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIF 732 (1019)
Q Consensus 657 ~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~~~L~----~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~ 732 (1019)
+..|+|..+..-.+......|.+++|.+..+..+..+...+. ..|+++..++|+++..+|..++....++. ..|+
T Consensus 290 ~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~-~~Iv 368 (681)
T PRK10917 290 DVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGE-ADIV 368 (681)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCC-CCEE
Confidence 346889775554444444578899999999887766655544 45799999999999999999999998876 3445
Q ss_pred EEecCCcccccCcccCCEEEEcCCC
Q 001731 733 LLTSQVGGLGLTLTKADRVIVVDPA 757 (1019)
Q Consensus 733 LlST~agg~GLNLt~A~~VIi~D~~ 757 (1019)
+.|.......+.+.....||+=+.+
T Consensus 369 VgT~~ll~~~v~~~~l~lvVIDE~H 393 (681)
T PRK10917 369 IGTHALIQDDVEFHNLGLVIIDEQH 393 (681)
T ss_pred EchHHHhcccchhcccceEEEechh
Confidence 5444455556778888877764333
No 272
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=83.67 E-value=8.9 Score=45.56 Aligned_cols=34 Identities=21% Similarity=0.075 Sum_probs=24.0
Q ss_pred eEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeC
Q 001731 325 GILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP 360 (1019)
Q Consensus 325 gILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP 360 (1019)
.+++-.+|+|||.++..++..+...+ .++++|+.
T Consensus 98 I~lvG~~GsGKTTtaakLA~~L~~~g--~kV~lV~~ 131 (437)
T PRK00771 98 IMLVGLQGSGKTTTAAKLARYFKKKG--LKVGLVAA 131 (437)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcC--CeEEEecC
Confidence 46777999999998887776665432 45665554
No 273
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=83.65 E-value=13 Score=41.79 Aligned_cols=40 Identities=23% Similarity=0.174 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhhcCC--CceEEEcCCCchHHHHHHHHHHHHh
Q 001731 308 QREGLRWLWSLHCQG--KGGILGDDMGLGKTMQICGFLAGLF 347 (1019)
Q Consensus 308 Q~egV~~L~~~~~~~--~GgILaDemGLGKTlqaIali~~l~ 347 (1019)
|.+++..+......+ ...+|.-+.|+|||..+-+++..+.
T Consensus 22 ~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 22 QEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred cHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 444555444433222 3468888999999988777766654
No 274
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=83.45 E-value=8.5 Score=43.80 Aligned_cols=48 Identities=19% Similarity=0.108 Sum_probs=37.8
Q ss_pred CCchHHHHHHHHHHHhhcCCC---ceEEEcCCCchHHHHHHHHHHHHhhcC
Q 001731 303 MLFPHQREGLRWLWSLHCQGK---GGILGDDMGLGKTMQICGFLAGLFHSR 350 (1019)
Q Consensus 303 ~L~phQ~egV~~L~~~~~~~~---GgILaDemGLGKTlqaIali~~l~~~~ 350 (1019)
.+||+|....+.+...+..++ .-++.-+.|+||+..|..++..+....
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~ 53 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQN 53 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 478999888888877665543 446778999999999999998887654
No 275
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=83.14 E-value=15 Score=44.50 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=22.5
Q ss_pred EEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEe
Q 001731 326 ILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVA 359 (1019)
Q Consensus 326 ILaDemGLGKTlqaIali~~l~~~~~~~~~LIVv 359 (1019)
.|.-++|.|||.++..++..+...+..+++.+|.
T Consensus 354 aLVGPtGvGKTTtaakLAa~la~~~~gkkVaLId 387 (559)
T PRK12727 354 ALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVT 387 (559)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 4556899999988777766654443334566554
No 276
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=82.60 E-value=6.7 Score=45.54 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhhcCC---CceEEEcCCCchHHHHHHHHHHHHhhcC
Q 001731 308 QREGLRWLWSLHCQG---KGGILGDDMGLGKTMQICGFLAGLFHSR 350 (1019)
Q Consensus 308 Q~egV~~L~~~~~~~---~GgILaDemGLGKTlqaIali~~l~~~~ 350 (1019)
|..++..+...+..+ ..-|+.-+.|+|||..|.+++..++...
T Consensus 24 q~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~ 69 (365)
T PRK07471 24 HAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATP 69 (365)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCC
Confidence 566666666655554 2446777999999999999999998654
No 277
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=82.55 E-value=9.1 Score=49.10 Aligned_cols=25 Identities=20% Similarity=0.093 Sum_probs=20.6
Q ss_pred eEEEcCCCchHHHHHHHHHHHHhhc
Q 001731 325 GILGDDMGLGKTMQICGFLAGLFHS 349 (1019)
Q Consensus 325 gILaDemGLGKTlqaIali~~l~~~ 349 (1019)
-|+.-+.|+|||..+..|+..+.+.
T Consensus 40 ~Lf~Gp~G~GKTt~A~~lAr~L~C~ 64 (824)
T PRK07764 40 YLFSGPRGCGKTSSARILARSLNCV 64 (824)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCcc
Confidence 4677899999999998888877653
No 278
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.39 E-value=10 Score=46.80 Aligned_cols=42 Identities=21% Similarity=0.082 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhhcCC--Cce-EEEcCCCchHHHHHHHHHHHHhhc
Q 001731 308 QREGLRWLWSLHCQG--KGG-ILGDDMGLGKTMQICGFLAGLFHS 349 (1019)
Q Consensus 308 Q~egV~~L~~~~~~~--~Gg-ILaDemGLGKTlqaIali~~l~~~ 349 (1019)
|...+..|......+ ..+ |+.-+.|+|||..|..++..+...
T Consensus 18 q~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 62 (584)
T PRK14952 18 QEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCA 62 (584)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 666666665554443 233 788899999999988888777653
No 279
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=82.37 E-value=13 Score=36.66 Aligned_cols=34 Identities=15% Similarity=0.073 Sum_probs=24.5
Q ss_pred EEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCc
Q 001731 326 ILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK 361 (1019)
Q Consensus 326 ILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~ 361 (1019)
+|.-+.|+|||..+..++..... ..++++++...
T Consensus 3 ~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~e 36 (165)
T cd01120 3 LVFGPTGSGKTTLALQLALNIAT--KGGKVVYVDIE 36 (165)
T ss_pred eEeCCCCCCHHHHHHHHHHHHHh--cCCEEEEEECC
Confidence 56678999999988887776644 33567777654
No 280
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=82.34 E-value=0.95 Score=46.63 Aligned_cols=44 Identities=16% Similarity=0.236 Sum_probs=26.7
Q ss_pred hhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCC
Q 001731 398 VLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKN 449 (1019)
Q Consensus 398 ~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN 449 (1019)
.....+|||++|..+.......... .-...-.+||+||||+|-+
T Consensus 116 ~~~~adivi~~y~yl~~~~~~~~~~--------~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 116 LAKNADIVICNYNYLFDPSIRKSLF--------GIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp CGGG-SEEEEETHHHHSHHHHHHHC--------T--CCCEEEEETTGGGCGG
T ss_pred hcccCCEEEeCHHHHhhHHHHhhhc--------cccccCcEEEEecccchHH
Confidence 3456899999999886543211100 0112347899999999843
No 281
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=82.13 E-value=2.7 Score=52.70 Aligned_cols=135 Identities=16% Similarity=0.188 Sum_probs=90.3
Q ss_pred hhhhHHHHHHHHHhhccCCCceeEecccHHHHHHHHHHHhhc-CCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecC
Q 001731 659 ISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSK-GYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQ 737 (1019)
Q Consensus 659 ~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~~~L~~~-gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~ 737 (1019)
.|+|.++.++++......|+.+||-..-......+...|..+ |.++..+|++.+..+|.....+..+|.. +|++.+ +
T Consensus 227 GSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~-~vVIGt-R 304 (730)
T COG1198 227 GSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEA-RVVIGT-R 304 (730)
T ss_pred CCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCc-eEEEEe-c
Confidence 699999999999999999999999999888777777777655 7899999999999999999999999884 444444 3
Q ss_pred CcccccCcccCCEEEEc---CCCCCch--hhhhhhhhhhhhCCCCcEEEEEEeeCCCHHHHHHH
Q 001731 738 VGGLGLTLTKADRVIVV---DPAWNPS--TDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYR 796 (1019)
Q Consensus 738 agg~GLNLt~A~~VIi~---D~~WNp~--~~~QaiGRa~RiGQ~k~V~VyrLit~gTiEEkI~~ 796 (1019)
.+= =+=+..---||+- |..+-.. -..+|.+=|...++...+-|.-=-+.-|+|.....
T Consensus 305 SAl-F~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~~~pvvLgSATPSLES~~~~ 367 (730)
T COG1198 305 SAL-FLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKENAPVVLGSATPSLESYANA 367 (730)
T ss_pred hhh-cCchhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHHhCCCEEEecCCCCHHHHHhh
Confidence 310 1112222334432 2222111 14455555555555555555444444566655443
No 282
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=82.11 E-value=12 Score=47.67 Aligned_cols=43 Identities=14% Similarity=0.108 Sum_probs=29.2
Q ss_pred chHHHHHHHHHHHhhc--CCC-ceE-EEcCCCchHHHHHHHHHHHHh
Q 001731 305 FPHQREGLRWLWSLHC--QGK-GGI-LGDDMGLGKTMQICGFLAGLF 347 (1019)
Q Consensus 305 ~phQ~egV~~L~~~~~--~~~-GgI-LaDemGLGKTlqaIali~~l~ 347 (1019)
|.-|...|...+.... .+. ++| |.-.+|+|||.++-.++..+.
T Consensus 760 REeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELq 806 (1164)
T PTZ00112 760 REKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQ 806 (1164)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 6677777765554322 222 343 788999999999888876664
No 283
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=81.96 E-value=8 Score=48.24 Aligned_cols=42 Identities=21% Similarity=0.143 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhcCC---CceEEEcCCCchHHHHHHHHHHHHhhc
Q 001731 308 QREGLRWLWSLHCQG---KGGILGDDMGLGKTMQICGFLAGLFHS 349 (1019)
Q Consensus 308 Q~egV~~L~~~~~~~---~GgILaDemGLGKTlqaIali~~l~~~ 349 (1019)
|...+..|...+..+ ..-|+.-+.|+|||..|.+++..+...
T Consensus 21 Qe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 21 QEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCE 65 (709)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 445555454443333 344788899999999888887776543
No 284
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=81.87 E-value=11 Score=49.58 Aligned_cols=58 Identities=14% Similarity=-0.008 Sum_probs=40.3
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccH
Q 001731 302 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLL 364 (1019)
Q Consensus 302 ~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl 364 (1019)
..|-+-|+.+|..+.. .++-++|.-.-|+|||.+.-++...+... ..+++.++|+.-.
T Consensus 380 ~~Ls~eQ~~Av~~i~~---~~r~~~v~G~AGTGKTt~l~~~~~~~e~~--G~~V~g~ApTgkA 437 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAG---PARIAAVVGRAGAGKTTMMKAAREAWEAA--GYRVVGGALAGKA 437 (1102)
T ss_pred CCCCHHHHHHHHHHhc---cCCeEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEcCcHHH
Confidence 3689999999987642 23446777799999997655555444333 2578888998544
No 285
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.56 E-value=8 Score=47.23 Aligned_cols=41 Identities=22% Similarity=0.062 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhhcCCC---ceEEEcCCCchHHHHHHHHHHHHhh
Q 001731 308 QREGLRWLWSLHCQGK---GGILGDDMGLGKTMQICGFLAGLFH 348 (1019)
Q Consensus 308 Q~egV~~L~~~~~~~~---GgILaDemGLGKTlqaIali~~l~~ 348 (1019)
|..++..|......++ .-|+.-+.|+|||..|..++..+..
T Consensus 21 q~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 21 QQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4444444444443433 2467889999999988888877754
No 286
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=81.23 E-value=12 Score=42.59 Aligned_cols=32 Identities=25% Similarity=0.186 Sum_probs=22.1
Q ss_pred EEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeC
Q 001731 327 LGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP 360 (1019)
Q Consensus 327 LaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP 360 (1019)
+.-+.|.|||.++..++..+... .++++++.-
T Consensus 119 lvGpnGsGKTTt~~kLA~~l~~~--g~~V~Li~~ 150 (318)
T PRK10416 119 VVGVNGVGKTTTIGKLAHKYKAQ--GKKVLLAAG 150 (318)
T ss_pred EECCCCCcHHHHHHHHHHHHHhc--CCeEEEEec
Confidence 44599999998877766665433 356777653
No 287
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=80.77 E-value=5.9 Score=47.28 Aligned_cols=39 Identities=23% Similarity=0.101 Sum_probs=26.4
Q ss_pred CceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCccc
Q 001731 323 KGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTL 363 (1019)
Q Consensus 323 ~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sL 363 (1019)
.+.+|.-+.|+|||-.+-+++..+... ..+++.+....+
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~~~~f 180 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRES--GGKILYVRSELF 180 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEeeHHHH
Confidence 356788899999998877777766543 245655554333
No 288
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=80.63 E-value=11 Score=46.81 Aligned_cols=42 Identities=24% Similarity=0.131 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhhcCC---CceEEEcCCCchHHHHHHHHHHHHhhc
Q 001731 308 QREGLRWLWSLHCQG---KGGILGDDMGLGKTMQICGFLAGLFHS 349 (1019)
Q Consensus 308 Q~egV~~L~~~~~~~---~GgILaDemGLGKTlqaIali~~l~~~ 349 (1019)
|...+..|...+..+ ..-|+.-+.|+|||..|..++..+...
T Consensus 29 q~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 29 QEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 555555555544444 345777799999999998888887654
No 289
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=80.56 E-value=12 Score=43.45 Aligned_cols=56 Identities=18% Similarity=0.312 Sum_probs=34.3
Q ss_pred ccEEEEcCC-cccCCcch-HHhHHhhcC--CcccEEEeecCCCCCCHHHHHHHHHhhcCC
Q 001731 436 WDYMILDEG-HLIKNPST-QRAKSLLEI--PSAHRIIISGTPIQNNLKELWALFNFCCPE 491 (1019)
Q Consensus 436 wd~VIlDEA-H~iKN~~s-~~~kal~~l--~~~~RllLTGTPiqN~l~EL~sll~fl~p~ 491 (1019)
.|+|.+|=+ +.-++... .-.+++... ....-+.||+|-=.+.+.+++..+..+...
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~~i~ 341 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSLFPID 341 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhccCCcc
Confidence 477888844 43443221 111222221 334558899999889999999998887654
No 290
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.34 E-value=9.1 Score=47.47 Aligned_cols=42 Identities=19% Similarity=0.113 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhhcCCC--ce-EEEcCCCchHHHHHHHHHHHHhhc
Q 001731 308 QREGLRWLWSLHCQGK--GG-ILGDDMGLGKTMQICGFLAGLFHS 349 (1019)
Q Consensus 308 Q~egV~~L~~~~~~~~--Gg-ILaDemGLGKTlqaIali~~l~~~ 349 (1019)
|...+..|...+..++ .. |+.-+.|+|||..+..++..+...
T Consensus 21 Qe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~ 65 (618)
T PRK14951 21 QEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQ 65 (618)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 6666666666554443 34 778899999999888888777653
No 291
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=80.05 E-value=19 Score=43.47 Aligned_cols=183 Identities=15% Similarity=0.078 Sum_probs=96.2
Q ss_pred cccCCCchHHHHHHHHHHHhhcCCC------ceEEEcCCCchHHHHHHHHHH--HHhhcCCCCeEEEEeCcc-cHHHHHH
Q 001731 299 KIGNMLFPHQREGLRWLWSLHCQGK------GGILGDDMGLGKTMQICGFLA--GLFHSRLIKRALVVAPKT-LLSHWIK 369 (1019)
Q Consensus 299 ~i~~~L~phQ~egV~~L~~~~~~~~------GgILaDemGLGKTlqaIali~--~l~~~~~~~~~LIVvP~s-Ll~qW~~ 369 (1019)
.....|-|||+..+.-+...+..+. -+++-.+=|=|||-.+.+++. .++.+.....++|++|+- ...+-..
T Consensus 57 ~~p~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~ 136 (546)
T COG4626 57 GFPESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFN 136 (546)
T ss_pred CCccccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhH
Confidence 3455689999999988876554443 358888999999977554443 334455556889999973 2333333
Q ss_pred HHHHhcCCCcEEEEcccccchhhHHHHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCC
Q 001731 370 ELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKN 449 (1019)
Q Consensus 370 E~~k~~~~~~v~~~~g~~~~~~~~~~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN 449 (1019)
+++....... ......-.+...+. +++..-....+.+.. +.......+..++|+||-|...+
T Consensus 137 ~ar~mv~~~~------------~l~~~~~~q~~s~~-i~~~~~~s~ik~~aa-----~~~~~Dg~~~~~~I~DEih~f~~ 198 (546)
T COG4626 137 PARDMVKRDD------------DLRDLCNVQTHSRT-ITHRKTDSTIKAVAA-----DPNTVDGLNSVGAIIDELHLFGK 198 (546)
T ss_pred HHHHHHHhCc------------chhhhhccccceeE-EEecccceeeeeecc-----CCCcccCCCcceEEEehhhhhcC
Confidence 4332211111 00000001111222 333222222222211 12234566789999999999988
Q ss_pred cchHHhHHhhcCC---cccEEEe--ecCCCCCCHHHHHHHHHhhcCCCCCChHHH
Q 001731 450 PSTQRAKSLLEIP---SAHRIII--SGTPIQNNLKELWALFNFCCPELLGDNKWF 499 (1019)
Q Consensus 450 ~~s~~~kal~~l~---~~~RllL--TGTPiqN~l~EL~sll~fl~p~~lg~~~~F 499 (1019)
+......+...+. -...+.+ +|-|...-+.+.+....-+..+...+...|
T Consensus 199 ~~~~~~~~~~g~~ar~~~l~~~ITT~g~~~~g~~~q~~~y~k~vl~g~~~d~~~f 253 (546)
T COG4626 199 QEDMYSEAKGGLGARPEGLVVYITTSGDPPAGVFKQKLQYAKDVLDGKIKDPHFF 253 (546)
T ss_pred HHHHHHHHHhhhccCcCceEEEEecCCCCCccHHHHHHHHHHHHhcCCcCCcceE
Confidence 7623333333332 2222333 455666666666666655555544444333
No 292
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.05 E-value=12 Score=45.71 Aligned_cols=41 Identities=22% Similarity=0.089 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhhcCC---CceEEEcCCCchHHHHHHHHHHHHhh
Q 001731 308 QREGLRWLWSLHCQG---KGGILGDDMGLGKTMQICGFLAGLFH 348 (1019)
Q Consensus 308 Q~egV~~L~~~~~~~---~GgILaDemGLGKTlqaIali~~l~~ 348 (1019)
|...+..+......+ ..-|+.-+.|+|||..|-.++..+..
T Consensus 21 q~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 21 QEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred cHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 444454444433332 33478889999999988888777754
No 293
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=80.00 E-value=15 Score=42.75 Aligned_cols=28 Identities=18% Similarity=0.112 Sum_probs=21.9
Q ss_pred CceEEEcCCCchHHHHHHHHHHHHhhcC
Q 001731 323 KGGILGDDMGLGKTMQICGFLAGLFHSR 350 (1019)
Q Consensus 323 ~GgILaDemGLGKTlqaIali~~l~~~~ 350 (1019)
.+.+|.-+.|+|||..+-.++..+....
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~~l~~~~ 83 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFEELEEIA 83 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 4578888999999998888777665443
No 294
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=79.85 E-value=7.6 Score=48.55 Aligned_cols=97 Identities=15% Similarity=0.154 Sum_probs=69.9
Q ss_pred chhhhHHHHHHHHHhhccCCCceeEecccHHHHHHHHHHHh----hcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEE
Q 001731 658 NISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIG----SKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFL 733 (1019)
Q Consensus 658 ~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~~~L~----~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~L 733 (1019)
..|+|..+..-.+......|.+++|-+..+..+..+...+. ..|+++..++|+++..+|..++....++. ..|++
T Consensus 265 TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~-~~IiV 343 (630)
T TIGR00643 265 VGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQ-IHLVV 343 (630)
T ss_pred CCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCC-CCEEE
Confidence 46889765443333334568899999999887776665554 44899999999999999999999988876 34555
Q ss_pred EecCCcccccCcccCCEEEEcC
Q 001731 734 LTSQVGGLGLTLTKADRVIVVD 755 (1019)
Q Consensus 734 lST~agg~GLNLt~A~~VIi~D 755 (1019)
.|....-..+.+.....||+=+
T Consensus 344 gT~~ll~~~~~~~~l~lvVIDE 365 (630)
T TIGR00643 344 GTHALIQEKVEFKRLALVIIDE 365 (630)
T ss_pred ecHHHHhccccccccceEEEec
Confidence 5545555567777777777633
No 295
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=79.46 E-value=7 Score=43.79 Aligned_cols=40 Identities=30% Similarity=0.294 Sum_probs=27.6
Q ss_pred chHHHHHHHHHHHhhcCC-----CceEEEcCCCchHHHHHHHHHH
Q 001731 305 FPHQREGLRWLWSLHCQG-----KGGILGDDMGLGKTMQICGFLA 344 (1019)
Q Consensus 305 ~phQ~egV~~L~~~~~~~-----~GgILaDemGLGKTlqaIali~ 344 (1019)
||.=.+++..|-.++... .+-+|.-++|.|||..+=-|..
T Consensus 39 Y~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~ 83 (302)
T PF05621_consen 39 YPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRR 83 (302)
T ss_pred CHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHH
Confidence 666667777776654332 4668888999999985544544
No 296
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=79.25 E-value=5 Score=41.29 Aligned_cols=49 Identities=22% Similarity=0.224 Sum_probs=36.6
Q ss_pred eEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHHHHHHHHHHhc
Q 001731 325 GILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVG 375 (1019)
Q Consensus 325 gILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~qW~~E~~k~~ 375 (1019)
.++.-++|+|||..++.++...... ..++++++.-....+..+.+..++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~--g~~v~~~s~e~~~~~~~~~~~~~g 50 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR--GEPGLYVTLEESPEELIENAESLG 50 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC--CCcEEEEECCCCHHHHHHHHHHcC
Confidence 3678899999999998888776543 368999988766666666665543
No 297
>PRK14873 primosome assembly protein PriA; Provisional
Probab=79.17 E-value=6.4 Score=49.27 Aligned_cols=131 Identities=8% Similarity=0.047 Sum_probs=87.3
Q ss_pred hhhhHHHHHHHHHhhccCCCceeEecccHHHHHHHHHHHhhc-C-CeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEec
Q 001731 659 ISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSK-G-YKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTS 736 (1019)
Q Consensus 659 ~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~~~L~~~-g-i~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST 736 (1019)
.|+|.+..++++......|+.+||...-......+...|... | ..++.+|++++..+|.+...+..+|... +++.|
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~--IViGt 247 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQAR--VVVGT 247 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCc--EEEEc
Confidence 589999999999999999999999999999888888888765 4 6799999999999999999999888743 55555
Q ss_pred CCcccccCcccCCEEEEcCCCCCch------hhhhhhhhhhhhCCCCcEEEEEEeeCCCHHHH
Q 001731 737 QVGGLGLTLTKADRVIVVDPAWNPS------TDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEK 793 (1019)
Q Consensus 737 ~agg~GLNLt~A~~VIi~D~~WNp~------~~~QaiGRa~RiGQ~k~V~VyrLit~gTiEEk 793 (1019)
+++- =+=+..-.-||+-|-+ +.+ -+.++.+=+...++...+.++.--+.-|+|..
T Consensus 248 RSAv-FaP~~~LgLIIvdEEh-d~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~ 308 (665)
T PRK14873 248 RSAV-FAPVEDLGLVAIWDDG-DDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQ 308 (665)
T ss_pred ceeE-EeccCCCCEEEEEcCC-chhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHH
Confidence 5431 1112233344443322 111 12344443433344444444444445566654
No 298
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=78.94 E-value=15 Score=41.64 Aligned_cols=125 Identities=19% Similarity=0.233 Sum_probs=68.4
Q ss_pred EEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHHHHHHHHHHhcCCCcEEEEcccccchhhHHHHHhhhCCCEE
Q 001731 326 ILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVL 405 (1019)
Q Consensus 326 ILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~qW~~E~~k~~~~~~v~~~~g~~~~~~~~~~~~~~~~~dVv 405 (1019)
++.---|.|||-+..-++..+...+ +++|+.+--+--.--.+++..|+-...+.+..+. .......
T Consensus 143 l~vGVNG~GKTTTIaKLA~~l~~~g--~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~-~G~DpAa----------- 208 (340)
T COG0552 143 LFVGVNGVGKTTTIAKLAKYLKQQG--KSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGK-EGADPAA----------- 208 (340)
T ss_pred EEEecCCCchHhHHHHHHHHHHHCC--CeEEEEecchHHHHHHHHHHHHHHHhCCeEEccC-CCCCcHH-----------
Confidence 4455899999965544555444333 5777777655544455556666544444444332 1111111
Q ss_pred EecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcch------HHhHHhhcC--CcccEEEe--ecCCCC
Q 001731 406 LTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPST------QRAKSLLEI--PSAHRIII--SGTPIQ 475 (1019)
Q Consensus 406 ItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s------~~~kal~~l--~~~~RllL--TGTPiq 475 (1019)
.-|+.+... ...++|+|++|=|-|+-|... ++.+.+... .++|.++| =||-=|
T Consensus 209 -VafDAi~~A----------------kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGq 271 (340)
T COG0552 209 -VAFDAIQAA----------------KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQ 271 (340)
T ss_pred -HHHHHHHHH----------------HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccCh
Confidence 123333221 134579999999999976542 333333332 34555554 588888
Q ss_pred CCHHHH
Q 001731 476 NNLKEL 481 (1019)
Q Consensus 476 N~l~EL 481 (1019)
|.+...
T Consensus 272 nal~QA 277 (340)
T COG0552 272 NALSQA 277 (340)
T ss_pred hHHHHH
Confidence 876654
No 299
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.72 E-value=19 Score=42.32 Aligned_cols=42 Identities=24% Similarity=0.164 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhhcCC---CceEEEcCCCchHHHHHHHHHHHHhhc
Q 001731 308 QREGLRWLWSLHCQG---KGGILGDDMGLGKTMQICGFLAGLFHS 349 (1019)
Q Consensus 308 Q~egV~~L~~~~~~~---~GgILaDemGLGKTlqaIali~~l~~~ 349 (1019)
|...+..|......+ ..-|+.-+.|+|||..|.+++..+...
T Consensus 21 q~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 21 QEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred hHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 445555554444443 234677899999999998888777653
No 300
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=78.36 E-value=10 Score=43.49 Aligned_cols=43 Identities=16% Similarity=0.132 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhhcCC--Cce-EEEcCCCchHHHHHHHHHHHHhhc
Q 001731 307 HQREGLRWLWSLHCQG--KGG-ILGDDMGLGKTMQICGFLAGLFHS 349 (1019)
Q Consensus 307 hQ~egV~~L~~~~~~~--~Gg-ILaDemGLGKTlqaIali~~l~~~ 349 (1019)
.|...+..+......+ ..+ |+.-+.|.|||..|..++..+...
T Consensus 10 ~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~ 55 (329)
T PRK08058 10 LQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCL 55 (329)
T ss_pred hHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCC
Confidence 4666666666655444 334 788899999999888888887654
No 301
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=78.16 E-value=12 Score=48.53 Aligned_cols=39 Identities=21% Similarity=0.382 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhhcC--CCceEEEcCCCchHHHHHHHHHHHH
Q 001731 308 QREGLRWLWSLHCQ--GKGGILGDDMGLGKTMQICGFLAGL 346 (1019)
Q Consensus 308 Q~egV~~L~~~~~~--~~GgILaDemGLGKTlqaIali~~l 346 (1019)
|..-+++++...++ ..+.||.-++|+|||..+=.++..+
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i 232 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRI 232 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHH
Confidence 33346666654333 3577999999999998766655544
No 302
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=78.15 E-value=12 Score=44.95 Aligned_cols=52 Identities=12% Similarity=0.156 Sum_probs=29.4
Q ss_pred ccEEEEcCCcccCCcchHHhHH---hhcC--CcccEEEeecCCCCCCHHHHHHHHHhh
Q 001731 436 WDYMILDEGHLIKNPSTQRAKS---LLEI--PSAHRIIISGTPIQNNLKELWALFNFC 488 (1019)
Q Consensus 436 wd~VIlDEAH~iKN~~s~~~ka---l~~l--~~~~RllLTGTPiqN~l~EL~sll~fl 488 (1019)
+++++||.+=+..+.. ..... +... +....+.|++|.-++.+.++...++.+
T Consensus 335 ~d~VLIDTaGr~~~d~-~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~~~f~~~ 391 (484)
T PRK06995 335 KHIVLIDTIGMSQRDR-MVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEVVQAYRGP 391 (484)
T ss_pred CCeEEeCCCCcChhhH-HHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHHHHHhccC
Confidence 5789999976543322 12222 2222 334457789998777666666555443
No 303
>PRK06893 DNA replication initiation factor; Validated
Probab=77.89 E-value=15 Score=39.64 Aligned_cols=25 Identities=8% Similarity=-0.048 Sum_probs=19.2
Q ss_pred eEEEcCCCchHHHHHHHHHHHHhhc
Q 001731 325 GILGDDMGLGKTMQICGFLAGLFHS 349 (1019)
Q Consensus 325 gILaDemGLGKTlqaIali~~l~~~ 349 (1019)
.+|.-+.|+|||-.+.+++..+...
T Consensus 42 l~l~G~~G~GKThL~~ai~~~~~~~ 66 (229)
T PRK06893 42 FYIWGGKSSGKSHLLKAVSNHYLLN 66 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4788899999998777777665443
No 304
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=77.32 E-value=4 Score=46.02 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=22.0
Q ss_pred eEEEcCCCchHHHHHHHHHHHHhhcC
Q 001731 325 GILGDDMGLGKTMQICGFLAGLFHSR 350 (1019)
Q Consensus 325 gILaDemGLGKTlqaIali~~l~~~~ 350 (1019)
-++..+.|.|||..|.+++..+....
T Consensus 27 lL~~Gp~G~Gktt~a~~lA~~l~~~~ 52 (325)
T COG0470 27 LLFYGPPGVGKTTAALALAKELLCEN 52 (325)
T ss_pred eeeeCCCCCCHHHHHHHHHHHHhCCC
Confidence 57778999999999999998887654
No 305
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.21 E-value=14 Score=45.88 Aligned_cols=41 Identities=17% Similarity=0.181 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhcCCC--ce-EEEcCCCchHHHHHHHHHHHHhh
Q 001731 308 QREGLRWLWSLHCQGK--GG-ILGDDMGLGKTMQICGFLAGLFH 348 (1019)
Q Consensus 308 Q~egV~~L~~~~~~~~--Gg-ILaDemGLGKTlqaIali~~l~~ 348 (1019)
|...+.+|...+..++ .. |+.-+.|+|||..+..++..+..
T Consensus 21 q~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c 64 (585)
T PRK14950 21 QEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNC 64 (585)
T ss_pred CHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 5566666655444443 22 78889999999988888877753
No 306
>PRK04132 replication factor C small subunit; Provisional
Probab=76.99 E-value=7.7 Score=49.67 Aligned_cols=43 Identities=16% Similarity=0.255 Sum_probs=26.4
Q ss_pred ccEEEEcCCcccCCcch-HHhHHhhcCCcccEEEeecCCCCCCH
Q 001731 436 WDYMILDEGHLIKNPST-QRAKSLLEIPSAHRIIISGTPIQNNL 478 (1019)
Q Consensus 436 wd~VIlDEAH~iKN~~s-~~~kal~~l~~~~RllLTGTPiqN~l 478 (1019)
+.+|||||||++-.... ...+.+...+...+++|+.++...-+
T Consensus 631 ~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi 674 (846)
T PRK04132 631 FKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKII 674 (846)
T ss_pred CEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCc
Confidence 67999999999943111 12222233346778889888765443
No 307
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=76.81 E-value=2.5 Score=43.86 Aligned_cols=46 Identities=22% Similarity=0.254 Sum_probs=30.6
Q ss_pred CCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHHHHHHHHH
Q 001731 321 QGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELT 372 (1019)
Q Consensus 321 ~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~qW~~E~~ 372 (1019)
.+.|.+|.-++|+|||..|++++..+...+ .+++++.-. .+..+++
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g--~~v~f~~~~----~L~~~l~ 91 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKG--YSVLFITAS----DLLDELK 91 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT----EEEEEHH----HHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCC--cceeEeecC----ceecccc
Confidence 467778888999999999999988777643 466666533 3444554
No 308
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=76.81 E-value=18 Score=38.77 Aligned_cols=36 Identities=22% Similarity=0.159 Sum_probs=23.7
Q ss_pred eEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeC
Q 001731 325 GILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP 360 (1019)
Q Consensus 325 gILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP 360 (1019)
.+|.-+.|+|||--.-+++..+....+..+++.+..
T Consensus 37 l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~ 72 (219)
T PF00308_consen 37 LFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA 72 (219)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccccccceeecH
Confidence 578889999999876666666655544445554443
No 309
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=76.68 E-value=13 Score=45.96 Aligned_cols=40 Identities=18% Similarity=0.056 Sum_probs=26.2
Q ss_pred HHHHHHHHHhhcCC---CceEEEcCCCchHHHHHHHHHHHHhh
Q 001731 309 REGLRWLWSLHCQG---KGGILGDDMGLGKTMQICGFLAGLFH 348 (1019)
Q Consensus 309 ~egV~~L~~~~~~~---~GgILaDemGLGKTlqaIali~~l~~ 348 (1019)
...+..|.+....+ ..-|+.-+.|+|||..|..++..+..
T Consensus 22 e~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 22 ETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred HHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence 33344444443333 33456779999999999888877754
No 310
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=76.55 E-value=15 Score=40.47 Aligned_cols=50 Identities=20% Similarity=0.193 Sum_probs=32.9
Q ss_pred CCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHHHHHHHH
Q 001731 321 QGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKEL 371 (1019)
Q Consensus 321 ~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~qW~~E~ 371 (1019)
.+.-.+|+-++|+|||..++.++..+... ...+++++.--.-..++...+
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~-~g~~vl~iS~E~~~~~~~~r~ 78 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQ-HGVRVGTISLEEPVVRTARRL 78 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHh-cCceEEEEEcccCHHHHHHHH
Confidence 34556889999999999888887766443 135788887643333333333
No 311
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=76.28 E-value=11 Score=47.42 Aligned_cols=65 Identities=23% Similarity=0.248 Sum_probs=39.4
Q ss_pred cccCCHHHHHHHHcCCCCCCCchhhHHHHhhhhc------CCCCCChhHHHHHHHHhhcCcccccccccccch
Q 001731 815 IRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHG------DQHNMDESLEAHIQFLDTLGIAGVSHHSLLFSK 881 (1019)
Q Consensus 815 ~~~fs~~dL~eLf~~~~~~~~~s~tq~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~g~~~h~~l~~~ 881 (1019)
..|++.+++-.||.+...- .+-++..+.+++. ....-+......+.||+...|...++.-.||+-
T Consensus 561 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fi~~~~ 631 (725)
T PRK07133 561 KDYLSVEEVINLIMLAIKF--HSQNQVEYKKLVQNWNKNLPLFEYDVEFMEIAHFLKDLKILASSDNFILFSS 631 (725)
T ss_pred hhhhhHHHHHHHHHHHHhh--cCccchhHHHHHHHHHhccchhhccHHHHHHHHHHhhhheeeecCceEEEec
Confidence 4578888888887653211 1112222222211 112346777788888999888888888888876
No 312
>PRK11054 helD DNA helicase IV; Provisional
Probab=76.16 E-value=5.1 Score=50.41 Aligned_cols=63 Identities=17% Similarity=0.074 Sum_probs=47.0
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCC--CCeEEEEeCcccHHHHHHH
Q 001731 302 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRL--IKRALVVAPKTLLSHWIKE 370 (1019)
Q Consensus 302 ~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~--~~~~LIVvP~sLl~qW~~E 370 (1019)
..|-+-|+++|..- ....++....|+|||.++++-++++...+. ...+|+++.+.-..+...+
T Consensus 195 ~~L~~~Q~~av~~~------~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~e 259 (684)
T PRK11054 195 SPLNPSQARAVVNG------EDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDE 259 (684)
T ss_pred CCCCHHHHHHHhCC------CCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHH
Confidence 35889999998522 234566668999999999998888876543 3489999998777665554
No 313
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=75.92 E-value=19 Score=42.48 Aligned_cols=54 Identities=11% Similarity=0.172 Sum_probs=31.5
Q ss_pred ccEEEEcCCcccCCcchHHhHHhhcC-----CcccEEEeecCCCCCCHHHHHHHHHhhcC
Q 001731 436 WDYMILDEGHLIKNPSTQRAKSLLEI-----PSAHRIIISGTPIQNNLKELWALFNFCCP 490 (1019)
Q Consensus 436 wd~VIlDEAH~iKN~~s~~~kal~~l-----~~~~RllLTGTPiqN~l~EL~sll~fl~p 490 (1019)
.++|++|.+=+..+ .......+..+ +....++|+||--.+.+.+++..+..+.+
T Consensus 270 ~d~VLIDTaGrsqr-d~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~~~~~ 328 (420)
T PRK14721 270 KHMVLIDTVGMSQR-DQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQGHGI 328 (420)
T ss_pred CCEEEecCCCCCcc-hHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhcCCCC
Confidence 57888888643322 12222223222 23445779999877777777777665544
No 314
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=75.61 E-value=19 Score=41.99 Aligned_cols=49 Identities=18% Similarity=0.186 Sum_probs=33.7
Q ss_pred ceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHHHHHHHHHHh
Q 001731 324 GGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAV 374 (1019)
Q Consensus 324 GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~qW~~E~~k~ 374 (1019)
-.+|+-++|.|||..++.++..+...+ +++|+|.-.--..|......++
T Consensus 84 lvLI~G~pG~GKStLllq~a~~~a~~g--~~VlYvs~EEs~~qi~~Ra~rl 132 (372)
T cd01121 84 VILIGGDPGIGKSTLLLQVAARLAKRG--GKVLYVSGEESPEQIKLRADRL 132 (372)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcC--CeEEEEECCcCHHHHHHHHHHc
Confidence 347788999999998888877665432 5788887654455555444443
No 315
>PRK10689 transcription-repair coupling factor; Provisional
Probab=75.58 E-value=23 Score=47.26 Aligned_cols=94 Identities=12% Similarity=0.081 Sum_probs=66.4
Q ss_pred hhhhHHHHHHHHHhhccCCCceeEecccHHHHHHHHHHHhh----cCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEE
Q 001731 659 ISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGS----KGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLL 734 (1019)
Q Consensus 659 ~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~~~L~~----~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~Ll 734 (1019)
.++|....+..+......|.+++|.+..+..+..+...+.. .++++..++|..+.+++..++.....+. ..|++.
T Consensus 631 GsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~-~dIVVg 709 (1147)
T PRK10689 631 GFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGK-IDILIG 709 (1147)
T ss_pred CcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCC-CCEEEE
Confidence 57787655443333344688999999999988877776654 3578888999999999999999888765 345555
Q ss_pred ecCCcccccCcccCCEEEE
Q 001731 735 TSQVGGLGLTLTKADRVIV 753 (1019)
Q Consensus 735 ST~agg~GLNLt~A~~VIi 753 (1019)
|.......+.+.....||+
T Consensus 710 Tp~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 710 THKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred CHHHHhCCCCHhhCCEEEE
Confidence 5444544566666666665
No 316
>PRK07952 DNA replication protein DnaC; Validated
Probab=75.30 E-value=8.3 Score=42.20 Aligned_cols=61 Identities=15% Similarity=0.149 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHhh---cCC-CceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHHHHHHHHH
Q 001731 306 PHQREGLRWLWSLH---CQG-KGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELT 372 (1019)
Q Consensus 306 phQ~egV~~L~~~~---~~~-~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~qW~~E~~ 372 (1019)
+.|..++..+.... ..+ .+.+|.-++|+|||..+.+++..+...+ .+++++. +..|...+.
T Consensus 79 ~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g--~~v~~it----~~~l~~~l~ 143 (244)
T PRK07952 79 EGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRG--KSVLIIT----VADIMSAMK 143 (244)
T ss_pred chHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEE----HHHHHHHHH
Confidence 45666665554421 222 3568888999999999999888876543 4566552 455665554
No 317
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=75.24 E-value=10 Score=42.33 Aligned_cols=36 Identities=19% Similarity=0.214 Sum_probs=24.1
Q ss_pred eEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeC
Q 001731 325 GILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP 360 (1019)
Q Consensus 325 gILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP 360 (1019)
.+++-++|+|||.++..++..+.......++.+|.-
T Consensus 197 i~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~ 232 (282)
T TIGR03499 197 IALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITT 232 (282)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 346669999999988877776654422245666653
No 318
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=75.24 E-value=20 Score=44.10 Aligned_cols=24 Identities=21% Similarity=0.142 Sum_probs=19.1
Q ss_pred eEEEcCCCchHHHHHHHHHHHHhh
Q 001731 325 GILGDDMGLGKTMQICGFLAGLFH 348 (1019)
Q Consensus 325 gILaDemGLGKTlqaIali~~l~~ 348 (1019)
-|+.-+.|+|||..|-.++..+..
T Consensus 41 yLf~Gp~GtGKTt~Ak~lAkal~c 64 (559)
T PRK05563 41 YLFSGPRGTGKTSAAKIFAKAVNC 64 (559)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcC
Confidence 366889999999988877776654
No 319
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=75.01 E-value=2.7 Score=43.55 Aligned_cols=50 Identities=24% Similarity=0.256 Sum_probs=29.4
Q ss_pred CccEEEEcCCcccCCcchHHhHHhhcCCcccEEEeecCCCCCCHHHHHHHHHhhcCCCCCChHHHHHHhhc
Q 001731 435 IWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYEL 505 (1019)
Q Consensus 435 ~wd~VIlDEAH~iKN~~s~~~kal~~l~~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg~~~~F~~~f~~ 505 (1019)
..|++|||||=.| +-....+. +....|+++|.|-. +.=|+...|.-+|..
T Consensus 90 ~~DlliVDEAAaI--p~p~L~~l---l~~~~~vv~stTi~----------------GYEGtGRgF~lkf~~ 139 (177)
T PF05127_consen 90 QADLLIVDEAAAI--PLPLLKQL---LRRFPRVVFSTTIH----------------GYEGTGRGFSLKFLK 139 (177)
T ss_dssp --SCEEECTGGGS---HHHHHHH---HCCSSEEEEEEEBS----------------STTBB-HHHHHHHHC
T ss_pred CCCEEEEechhcC--CHHHHHHH---HhhCCEEEEEeecc----------------ccccCCceeeeehhh
Confidence 3589999999877 22222222 45667888988852 445566666655543
No 320
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=74.69 E-value=20 Score=49.56 Aligned_cols=65 Identities=18% Similarity=0.215 Sum_probs=43.0
Q ss_pred ccccCCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhc--CCCCeEEEEeCcccH
Q 001731 298 GKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHS--RLIKRALVVAPKTLL 364 (1019)
Q Consensus 298 ~~i~~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~--~~~~~~LIVvP~sLl 364 (1019)
..+...|-+-|++++..++. ...+-.+|--..|+|||.+.-+++..+... ....+++.++|+.-.
T Consensus 962 ~~~~~~Lt~~Q~~Av~~il~--s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrA 1028 (1747)
T PRK13709 962 GELMEGLTSGQRAATRMILE--STDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRA 1028 (1747)
T ss_pred HHhcCCCCHHHHHHHHHHHh--CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHH
Confidence 33455789999999988765 123456777799999998755555444321 222467888998543
No 321
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=74.65 E-value=17 Score=38.22 Aligned_cols=35 Identities=20% Similarity=0.110 Sum_probs=23.6
Q ss_pred EEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcc
Q 001731 326 ILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKT 362 (1019)
Q Consensus 326 ILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~s 362 (1019)
++.-+|++|||...|-.+..+... ..+++|..|..
T Consensus 8 ~i~gpM~SGKT~eLl~r~~~~~~~--g~~v~vfkp~i 42 (201)
T COG1435 8 FIYGPMFSGKTEELLRRARRYKEA--GMKVLVFKPAI 42 (201)
T ss_pred EEEccCcCcchHHHHHHHHHHHHc--CCeEEEEeccc
Confidence 567799999997554444433332 25899999873
No 322
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=74.53 E-value=8.3 Score=43.94 Aligned_cols=52 Identities=17% Similarity=0.138 Sum_probs=32.7
Q ss_pred CchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEE
Q 001731 304 LFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVV 358 (1019)
Q Consensus 304 L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIV 358 (1019)
+.+.|...+..+ ...+++.|++-+||+|||-.+-+++..+.......++++|
T Consensus 129 ~~~~~~~~L~~~---v~~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivti 180 (323)
T PRK13833 129 MTEAQASVIRSA---IDSRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVIL 180 (323)
T ss_pred CCHHHHHHHHHH---HHcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEe
Confidence 455666544444 3456677899999999998776666655433333455444
No 323
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=74.21 E-value=45 Score=37.06 Aligned_cols=130 Identities=12% Similarity=0.107 Sum_probs=65.5
Q ss_pred CceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCc----ccHHHHHHHHHHhcCCCcEEEEcccccchhhHHHHHh
Q 001731 323 KGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK----TLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYV 398 (1019)
Q Consensus 323 ~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~----sLl~qW~~E~~k~~~~~~v~~~~g~~~~~~~~~~~~~ 398 (1019)
....+.-+.|+|||..+..++..+... ..++.+|.-- ..+.||........ +..+..
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~--~~~v~~i~~D~~ri~~~~ql~~~~~~~~----~~~~~~------------- 136 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGK--KKTVGFITTDHSRIGTVQQLQDYVKTIG----FEVIAV------------- 136 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHHHhhhcC----ceEEec-------------
Confidence 445677789999998666555554332 2456555542 35667765443321 111111
Q ss_pred hhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcchHH---hHHhhcCCc-ccEEEeecCCC
Q 001731 399 LQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQR---AKSLLEIPS-AHRIIISGTPI 474 (1019)
Q Consensus 399 ~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s~~---~kal~~l~~-~~RllLTGTPi 474 (1019)
.+...+......+. ....+++||+|-+=+.-+..... .+.+..... ...+.|+||--
T Consensus 137 --------~~~~~l~~~l~~l~-----------~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~ 197 (270)
T PRK06731 137 --------RDEAAMTRALTYFK-----------EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK 197 (270)
T ss_pred --------CCHHHHHHHHHHHH-----------hcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC
Confidence 11122211111111 01236999999886653322222 122222222 33466899987
Q ss_pred CCCHHHHHHHHHhhcC
Q 001731 475 QNNLKELWALFNFCCP 490 (1019)
Q Consensus 475 qN~l~EL~sll~fl~p 490 (1019)
.+...+....++-+.+
T Consensus 198 ~~d~~~~~~~f~~~~~ 213 (270)
T PRK06731 198 SKDMIEIITNFKDIHI 213 (270)
T ss_pred HHHHHHHHHHhCCCCC
Confidence 7777777666655433
No 324
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=74.08 E-value=19 Score=49.23 Aligned_cols=64 Identities=17% Similarity=0.199 Sum_probs=42.1
Q ss_pred cccCCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhh--cCCCCeEEEEeCcccH
Q 001731 299 KIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFH--SRLIKRALVVAPKTLL 364 (1019)
Q Consensus 299 ~i~~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~--~~~~~~~LIVvP~sLl 364 (1019)
.+...|-+-|++++..++. ...+-.+|--..|+|||.+.-+++..+.. ......++.++|+.-.
T Consensus 831 ~~~~~Lt~~Qr~Av~~iLt--s~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkA 896 (1623)
T PRK14712 831 ELMEKLTSGQRAATRMILE--TSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRA 896 (1623)
T ss_pred hhhcccCHHHHHHHHHHHh--CCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHH
Confidence 3445789999999987764 12345677779999999875554443322 1223467888997543
No 325
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=74.01 E-value=6.7 Score=44.27 Aligned_cols=46 Identities=20% Similarity=0.190 Sum_probs=30.0
Q ss_pred HHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEE
Q 001731 313 RWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVV 358 (1019)
Q Consensus 313 ~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIV 358 (1019)
.+|+.....+++.+++-+||+|||-.+-+++..+.......++++|
T Consensus 123 ~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~ti 168 (299)
T TIGR02782 123 DVLREAVLARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVII 168 (299)
T ss_pred HHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEE
Confidence 4455555566778899999999998766666555433333455544
No 326
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.92 E-value=8.5 Score=44.14 Aligned_cols=57 Identities=16% Similarity=0.072 Sum_probs=32.0
Q ss_pred EEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHHHHHHHHHHhcCCCcEEEEc
Q 001731 326 ILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVGLSAKIREYF 384 (1019)
Q Consensus 326 ILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~qW~~E~~k~~~~~~v~~~~ 384 (1019)
+++-=-|.|||-++.-+++++... . .++.+||--+--.--.++++.++....+..|.
T Consensus 105 mfVGLqG~GKTTtc~KlA~y~kkk-G-~K~~LvcaDTFRagAfDQLkqnA~k~~iP~yg 161 (483)
T KOG0780|consen 105 MFVGLQGSGKTTTCTKLAYYYKKK-G-YKVALVCADTFRAGAFDQLKQNATKARVPFYG 161 (483)
T ss_pred EEEeccCCCcceeHHHHHHHHHhc-C-CceeEEeecccccchHHHHHHHhHhhCCeeEe
Confidence 455678999997766665555433 3 34555555443333344555555555554443
No 327
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=73.90 E-value=9.8 Score=45.91 Aligned_cols=56 Identities=14% Similarity=0.034 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHhh-----cCCCceEEEcCCCchHHHHHHHHHHHHhh-cCCC-CeEEEEeCc
Q 001731 306 PHQREGLRWLWSLH-----CQGKGGILGDDMGLGKTMQICGFLAGLFH-SRLI-KRALVVAPK 361 (1019)
Q Consensus 306 phQ~egV~~L~~~~-----~~~~GgILaDemGLGKTlqaIali~~l~~-~~~~-~~~LIVvP~ 361 (1019)
|+|+..+..++... ...+.++|.-+=|-|||..+.+++.+.+. .+.. .-++++++.
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~ 63 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANT 63 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCC
Confidence 78888777665321 11245678889999999876665544433 2222 346666665
No 328
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=73.81 E-value=9.3 Score=39.49 Aligned_cols=53 Identities=25% Similarity=0.350 Sum_probs=34.3
Q ss_pred CCCccEEEEcCCcccCCcc----hHHhHHhhcCCcccEEEeecCCCCCCHHHHHHHHHhh
Q 001731 433 DAIWDYMILDEGHLIKNPS----TQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFC 488 (1019)
Q Consensus 433 ~~~wd~VIlDEAH~iKN~~----s~~~kal~~l~~~~RllLTGTPiqN~l~EL~sll~fl 488 (1019)
...||+||+||.=..-+.. ..+...+..-+..--++|||.-. +.+|..+.+++
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~---p~~l~e~AD~V 151 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC---PQDLLELADLV 151 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC---CHHHHHhCcee
Confidence 3468999999997654422 34555555556666799999855 44554444443
No 329
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=73.77 E-value=17 Score=41.47 Aligned_cols=46 Identities=17% Similarity=0.235 Sum_probs=34.2
Q ss_pred CchHHHHHHHHHHHhhcCCCce-EEEcCCCchHHHHHHHHHHHHhhc
Q 001731 304 LFPHQREGLRWLWSLHCQGKGG-ILGDDMGLGKTMQICGFLAGLFHS 349 (1019)
Q Consensus 304 L~phQ~egV~~L~~~~~~~~Gg-ILaDemGLGKTlqaIali~~l~~~ 349 (1019)
+||+|....+.+.....+-..+ |+.-+.|+|||..|..++..+...
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~ 48 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLCE 48 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHcCC
Confidence 5888888777776654443444 577799999999999888887653
No 330
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=73.57 E-value=12 Score=40.25 Aligned_cols=39 Identities=18% Similarity=0.142 Sum_probs=29.2
Q ss_pred CCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeC
Q 001731 321 QGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP 360 (1019)
Q Consensus 321 ~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP 360 (1019)
.|.=.+|+-.+|+|||..++.++....... ..++++++.
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~-g~~vly~s~ 50 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQ-GKPVLFFSL 50 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCceEEEeC
Confidence 344458899999999998888877665442 358888884
No 331
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=73.52 E-value=42 Score=41.59 Aligned_cols=105 Identities=16% Similarity=0.203 Sum_probs=73.5
Q ss_pred hhhhHHHHHHHHHhhccCCCceeEecccHH----HHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEE
Q 001731 659 ISCKISFILSLLDKLIPEGHNVLIFSQTRK----MLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLL 734 (1019)
Q Consensus 659 ~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~----~ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~Ll 734 (1019)
.|+|.....--.-.....|..+.+....-- ..+-+.++|...|+.+..+.|+++.++|.++.++-.+|... +++-
T Consensus 293 GSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~-ivVG 371 (677)
T COG1200 293 GSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEID-IVVG 371 (677)
T ss_pred CCCHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCC-EEEE
Confidence 577854433333333456778888887643 45566777777899999999999999999999999999854 4444
Q ss_pred ecCCcccccCcccCCEEEEcCCCCCchhhhhhhhhhhh
Q 001731 735 TSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYR 772 (1019)
Q Consensus 735 ST~agg~GLNLt~A~~VIi~D~~WNp~~~~QaiGRa~R 772 (1019)
|-...-..+.+...-.||+ .+.+|+|=.-|
T Consensus 372 THALiQd~V~F~~LgLVIi--------DEQHRFGV~QR 401 (677)
T COG1200 372 THALIQDKVEFHNLGLVII--------DEQHRFGVHQR 401 (677)
T ss_pred cchhhhcceeecceeEEEE--------eccccccHHHH
Confidence 4455677888888877776 34555554444
No 332
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=73.03 E-value=5.2 Score=38.27 Aligned_cols=34 Identities=21% Similarity=0.137 Sum_probs=22.9
Q ss_pred EEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccH
Q 001731 326 ILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLL 364 (1019)
Q Consensus 326 ILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl 364 (1019)
+|.-++|+|||..+-.++..+ ..+++.+....+.
T Consensus 2 ll~G~~G~GKT~l~~~la~~l-----~~~~~~i~~~~~~ 35 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQYL-----GFPFIEIDGSELI 35 (132)
T ss_dssp EEESSTTSSHHHHHHHHHHHT-----TSEEEEEETTHHH
T ss_pred EEECcCCCCeeHHHHHHHhhc-----ccccccccccccc
Confidence 566699999998776666554 2356666665554
No 333
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=73.02 E-value=28 Score=42.97 Aligned_cols=42 Identities=19% Similarity=0.056 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhhcCC---CceEEEcCCCchHHHHHHHHHHHHhhc
Q 001731 308 QREGLRWLWSLHCQG---KGGILGDDMGLGKTMQICGFLAGLFHS 349 (1019)
Q Consensus 308 Q~egV~~L~~~~~~~---~GgILaDemGLGKTlqaIali~~l~~~ 349 (1019)
|...+..+......+ +.-|+.-+.|+|||..|.+++..+...
T Consensus 21 Qe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~ 65 (605)
T PRK05896 21 QELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCL 65 (605)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 444444444443333 234678899999999998888877643
No 334
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=72.73 E-value=5.5 Score=42.62 Aligned_cols=40 Identities=30% Similarity=0.500 Sum_probs=26.0
Q ss_pred CccEEEEcCCcccCCcchHHhHHhhcCCcccEEEeecCCCCCC
Q 001731 435 IWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNN 477 (1019)
Q Consensus 435 ~wd~VIlDEAH~iKN~~s~~~kal~~l~~~~RllLTGTPiqN~ 477 (1019)
..+++||||++.+-. ....- +..+.....+.|-|=|.|-.
T Consensus 62 ~~~~liiDE~~~~~~--g~l~~-l~~~~~~~~~~l~GDp~Q~~ 101 (234)
T PF01443_consen 62 SYDTLIIDEAQLLPP--GYLLL-LLSLSPAKNVILFGDPLQIP 101 (234)
T ss_pred cCCEEEEeccccCCh--HHHHH-HHhhccCcceEEEECchhcc
Confidence 368999999999733 22222 34444445677889998754
No 335
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=72.67 E-value=6.3 Score=48.17 Aligned_cols=46 Identities=22% Similarity=0.292 Sum_probs=37.7
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHh
Q 001731 302 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLF 347 (1019)
Q Consensus 302 ~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~ 347 (1019)
.++|+.|..-.+-+++-...|+=||+-.+||+|||+..|+....++
T Consensus 14 y~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL 59 (821)
T KOG1133|consen 14 YTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWL 59 (821)
T ss_pred CCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHH
Confidence 4578899988888888888899999999999999998665554443
No 336
>PRK05642 DNA replication initiation factor; Validated
Probab=72.43 E-value=14 Score=39.98 Aligned_cols=37 Identities=14% Similarity=0.322 Sum_probs=23.4
Q ss_pred ccEEEEcCCcccCCcch---HHhHHhhcCC-cccEEEeecC
Q 001731 436 WDYMILDEGHLIKNPST---QRAKSLLEIP-SAHRIIISGT 472 (1019)
Q Consensus 436 wd~VIlDEAH~iKN~~s---~~~kal~~l~-~~~RllLTGT 472 (1019)
.+++|||+.|.+.+... ..+..+..+. ...++++|+|
T Consensus 98 ~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~ 138 (234)
T PRK05642 98 YELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAAS 138 (234)
T ss_pred CCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 47899999998865322 2334443333 3466888887
No 337
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=72.36 E-value=26 Score=42.34 Aligned_cols=41 Identities=22% Similarity=0.021 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhcCC--Cce-EEEcCCCchHHHHHHHHHHHHhh
Q 001731 308 QREGLRWLWSLHCQG--KGG-ILGDDMGLGKTMQICGFLAGLFH 348 (1019)
Q Consensus 308 Q~egV~~L~~~~~~~--~Gg-ILaDemGLGKTlqaIali~~l~~ 348 (1019)
|...+..+......+ ..+ |+.-+.|+|||..|-.++..+..
T Consensus 21 q~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c 64 (486)
T PRK14953 21 QEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNC 64 (486)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 555555555544443 233 67889999999888877776653
No 338
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=71.67 E-value=13 Score=48.16 Aligned_cols=39 Identities=21% Similarity=0.308 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhcC--CCceEEEcCCCchHHHHHHHHHHHHh
Q 001731 309 REGLRWLWSLHCQ--GKGGILGDDMGLGKTMQICGFLAGLF 347 (1019)
Q Consensus 309 ~egV~~L~~~~~~--~~GgILaDemGLGKTlqaIali~~l~ 347 (1019)
..-++++....++ ..+.||.-++|.|||..+-+++..+.
T Consensus 179 ~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~ 219 (852)
T TIGR03346 179 DEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIV 219 (852)
T ss_pred HHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHh
Confidence 3347777764433 35678888999999988777665543
No 339
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=71.61 E-value=19 Score=38.79 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=21.2
Q ss_pred CceEEEcCCCchHHHHHHHHHHHHhh
Q 001731 323 KGGILGDDMGLGKTMQICGFLAGLFH 348 (1019)
Q Consensus 323 ~GgILaDemGLGKTlqaIali~~l~~ 348 (1019)
.+-|++-++|.|||-.+.+++..++.
T Consensus 49 P~liisGpPG~GKTTsi~~LAr~LLG 74 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCLARELLG 74 (333)
T ss_pred CceEeeCCCCCchhhHHHHHHHHHhC
Confidence 56799999999999888777776653
No 340
>PRK04195 replication factor C large subunit; Provisional
Probab=71.61 E-value=14 Score=44.54 Aligned_cols=25 Identities=24% Similarity=0.198 Sum_probs=19.3
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHH
Q 001731 322 GKGGILGDDMGLGKTMQICGFLAGL 346 (1019)
Q Consensus 322 ~~GgILaDemGLGKTlqaIali~~l 346 (1019)
.+..||.-+.|+|||..+-+++..+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4567888899999998776665544
No 341
>CHL00095 clpC Clp protease ATP binding subunit
Probab=71.50 E-value=22 Score=46.06 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=20.5
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHHh
Q 001731 322 GKGGILGDDMGLGKTMQICGFLAGLF 347 (1019)
Q Consensus 322 ~~GgILaDemGLGKTlqaIali~~l~ 347 (1019)
..+.||.-++|.|||..+-+++..+.
T Consensus 200 ~~n~lL~G~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred cCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 35779999999999988777666554
No 342
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=71.32 E-value=15 Score=47.81 Aligned_cols=95 Identities=13% Similarity=0.116 Sum_probs=70.2
Q ss_pred chhhhHHHHHHHHHhhccCCCceeEecccHHHHHHHHHHHhh----cCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEE
Q 001731 658 NISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGS----KGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFL 733 (1019)
Q Consensus 658 ~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~~~L~~----~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~L 733 (1019)
..|+|..+.+..+-.....|.+++|.+..+..+......+.. .++++..++|.++..++.++++.+..+. ..|++
T Consensus 481 TGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~-~dIVI 559 (926)
T TIGR00580 481 VGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGK-IDILI 559 (926)
T ss_pred CCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCC-ceEEE
Confidence 368887765544433444678999999999988877776654 4678899999999999999999998875 34455
Q ss_pred EecCCcccccCcccCCEEEE
Q 001731 734 LTSQVGGLGLTLTKADRVIV 753 (1019)
Q Consensus 734 lST~agg~GLNLt~A~~VIi 753 (1019)
.|.......+.+.....||+
T Consensus 560 GTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 560 GTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred chHHHhhCCCCcccCCEEEe
Confidence 55455555677778877776
No 343
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=70.90 E-value=36 Score=35.79 Aligned_cols=53 Identities=23% Similarity=0.300 Sum_probs=34.2
Q ss_pred CCCccEEEEcCCcccCCc----chHHhHHhhcCCcccEEEeecCCCCCCHHHHHHHH
Q 001731 433 DAIWDYMILDEGHLIKNP----STQRAKSLLEIPSAHRIIISGTPIQNNLKELWALF 485 (1019)
Q Consensus 433 ~~~wd~VIlDEAH~iKN~----~s~~~kal~~l~~~~RllLTGTPiqN~l~EL~sll 485 (1019)
...|++|||||.=..-+. ...+...+..-+..--++|||--....+.|+..++
T Consensus 113 ~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~ADlV 169 (191)
T PRK05986 113 DESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEAADLV 169 (191)
T ss_pred CCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCchh
Confidence 456899999998766543 23455555555666679999985544444444333
No 344
>PRK13342 recombination factor protein RarA; Reviewed
Probab=70.09 E-value=18 Score=42.85 Aligned_cols=23 Identities=26% Similarity=0.099 Sum_probs=17.4
Q ss_pred CceEEEcCCCchHHHHHHHHHHH
Q 001731 323 KGGILGDDMGLGKTMQICGFLAG 345 (1019)
Q Consensus 323 ~GgILaDemGLGKTlqaIali~~ 345 (1019)
...||.-+.|+|||..|-++...
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~ 59 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGA 59 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35688889999999876665443
No 345
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=69.84 E-value=9.3 Score=42.19 Aligned_cols=49 Identities=12% Similarity=-0.004 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEe
Q 001731 306 PHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVA 359 (1019)
Q Consensus 306 phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVv 359 (1019)
|+.+..+..+......+...+|..++|+|||..|-++...+ ..+++.++
T Consensus 5 ~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~l-----g~~~~~i~ 53 (262)
T TIGR02640 5 DAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKR-----DRPVMLIN 53 (262)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHh-----CCCEEEEe
Confidence 45556666666656667888999999999998877765432 24566553
No 346
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=69.82 E-value=28 Score=43.33 Aligned_cols=51 Identities=14% Similarity=0.010 Sum_probs=31.9
Q ss_pred HHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCc
Q 001731 309 REGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK 361 (1019)
Q Consensus 309 ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~ 361 (1019)
.+-|..+...+.+.-. ++.-+=|.|||..+..++..+.... ..+++|.+|.
T Consensus 175 ~~~id~~~~~fkq~~t-V~taPRqrGKS~iVgi~l~~La~f~-Gi~IlvTAH~ 225 (752)
T PHA03333 175 LREIDRIFDEYGKCYT-AATVPRRCGKTTIMAIILAAMISFL-EIDIVVQAQR 225 (752)
T ss_pred HHHHHHHHHHHhhcce-EEEeccCCCcHHHHHHHHHHHHHhc-CCeEEEECCC
Confidence 3334445555555433 4445889999987665555554322 3589999996
No 347
>PRK10865 protein disaggregation chaperone; Provisional
Probab=69.64 E-value=26 Score=45.48 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=25.9
Q ss_pred HHHHHHHhhc--CCCceEEEcCCCchHHHHHHHHHHHHh
Q 001731 311 GLRWLWSLHC--QGKGGILGDDMGLGKTMQICGFLAGLF 347 (1019)
Q Consensus 311 gV~~L~~~~~--~~~GgILaDemGLGKTlqaIali~~l~ 347 (1019)
-++.++...+ ...+.||.-++|+|||..+-+++..+.
T Consensus 186 ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~ 224 (857)
T PRK10865 186 EIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII 224 (857)
T ss_pred HHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhh
Confidence 3666665433 235778999999999988777666553
No 348
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=69.41 E-value=10 Score=40.55 Aligned_cols=51 Identities=20% Similarity=0.236 Sum_probs=36.4
Q ss_pred CceEEEcCCCchHHHHHHHHHHHHhhc-CCCCeEEEEeCcccHHHHHHHHHHhc
Q 001731 323 KGGILGDDMGLGKTMQICGFLAGLFHS-RLIKRALVVAPKTLLSHWIKELTAVG 375 (1019)
Q Consensus 323 ~GgILaDemGLGKTlqaIali~~l~~~-~~~~~~LIVvP~sLl~qW~~E~~k~~ 375 (1019)
.-.++.-++|+|||+.++.+++..... + .+++.|+-..-..++.+.+..++
T Consensus 20 s~~li~G~~GsGKT~l~~q~l~~~~~~~g--e~vlyvs~ee~~~~l~~~~~s~g 71 (226)
T PF06745_consen 20 SVVLISGPPGSGKTTLALQFLYNGLKNFG--EKVLYVSFEEPPEELIENMKSFG 71 (226)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHHT----EEEEESSS-HHHHHHHHHTTT
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHhhhhcC--CcEEEEEecCCHHHHHHHHHHcC
Confidence 344777799999999999888766555 4 57888887666677777776654
No 349
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=69.06 E-value=26 Score=43.31 Aligned_cols=42 Identities=21% Similarity=0.117 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhhcCC--Cce-EEEcCCCchHHHHHHHHHHHHhhc
Q 001731 308 QREGLRWLWSLHCQG--KGG-ILGDDMGLGKTMQICGFLAGLFHS 349 (1019)
Q Consensus 308 Q~egV~~L~~~~~~~--~Gg-ILaDemGLGKTlqaIali~~l~~~ 349 (1019)
|...+..|......+ ..+ |+.-+.|+|||..+..++..+...
T Consensus 21 q~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~ 65 (576)
T PRK14965 21 QEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCE 65 (576)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCC
Confidence 444555555443333 234 677799999999888888777543
No 350
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=68.80 E-value=4.9 Score=49.87 Aligned_cols=9 Identities=11% Similarity=-0.097 Sum_probs=3.9
Q ss_pred CCCCccccc
Q 001731 87 SKGNLPEYA 95 (1019)
Q Consensus 87 ~~~~~~~~~ 95 (1019)
+-++-+.|.
T Consensus 1327 sdvh~~r~k 1335 (1516)
T KOG1832|consen 1327 SDVHTRRVK 1335 (1516)
T ss_pred hhhcccccc
Confidence 344444443
No 351
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=68.78 E-value=21 Score=40.68 Aligned_cols=43 Identities=19% Similarity=0.285 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhhcCC---CceEEEcCCCchHHHHHHHHHHHHhhcC
Q 001731 308 QREGLRWLWSLHCQG---KGGILGDDMGLGKTMQICGFLAGLFHSR 350 (1019)
Q Consensus 308 Q~egV~~L~~~~~~~---~GgILaDemGLGKTlqaIali~~l~~~~ 350 (1019)
|..++..+......+ ..-++.-+.|.||+..|.+++..++...
T Consensus 9 q~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~ 54 (314)
T PRK07399 9 QPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQG 54 (314)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 556666666655454 3446777999999999999999887654
No 352
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=68.68 E-value=13 Score=42.44 Aligned_cols=55 Identities=15% Similarity=0.216 Sum_probs=34.0
Q ss_pred CchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCc
Q 001731 304 LFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK 361 (1019)
Q Consensus 304 L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~ 361 (1019)
+-+.|.+.+ +.....+++.+++-+||+|||-.+-+++..+.......++++|-..
T Consensus 133 ~~~~~~~~L---~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~ 187 (319)
T PRK13894 133 MTAAQREAI---IAAVRAHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDT 187 (319)
T ss_pred CCHHHHHHH---HHHHHcCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCC
Confidence 345565544 4333456778899999999997666666555333334465555443
No 353
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=68.35 E-value=10 Score=48.12 Aligned_cols=66 Identities=18% Similarity=0.081 Sum_probs=47.3
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcC--CCCeEEEEeCcc-cHHHHHHHHHHh
Q 001731 303 MLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSR--LIKRALVVAPKT-LLSHWIKELTAV 374 (1019)
Q Consensus 303 ~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~--~~~~~LIVvP~s-Ll~qW~~E~~k~ 374 (1019)
.|-|-|+++|.+- .+.+++....|+|||.+.+.-++++.... ....+|+|+.+. .......-+.+.
T Consensus 4 ~Ln~~Q~~av~~~------~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~ 72 (715)
T TIGR01075 4 GLNDKQREAVAAP------PGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGAL 72 (715)
T ss_pred ccCHHHHHHHcCC------CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHH
Confidence 4889999988531 34567777999999999988888887643 335789999874 444455555544
No 354
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=67.68 E-value=27 Score=44.22 Aligned_cols=51 Identities=8% Similarity=0.230 Sum_probs=28.3
Q ss_pred ccEEEEcCCcccCCcchHHhHHhhcC-----CcccEEEeecCCCCCCHHHHHHHHHh
Q 001731 436 WDYMILDEGHLIKNPSTQRAKSLLEI-----PSAHRIIISGTPIQNNLKELWALFNF 487 (1019)
Q Consensus 436 wd~VIlDEAH~iKN~~s~~~kal~~l-----~~~~RllLTGTPiqN~l~EL~sll~f 487 (1019)
.++||||=+=+.-+... ....+..+ +....+.|++|.-...+.++..-++.
T Consensus 264 ~D~VLIDTAGRs~~d~~-l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~ 319 (767)
T PRK14723 264 KHLVLIDTVGMSQRDRN-VSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRH 319 (767)
T ss_pred CCEEEEeCCCCCccCHH-HHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhh
Confidence 47888988876643322 22322222 23445678898655555556555543
No 355
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=67.66 E-value=25 Score=43.81 Aligned_cols=41 Identities=20% Similarity=0.080 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhhcCC---CceEEEcCCCchHHHHHHHHHHHHhh
Q 001731 308 QREGLRWLWSLHCQG---KGGILGDDMGLGKTMQICGFLAGLFH 348 (1019)
Q Consensus 308 Q~egV~~L~~~~~~~---~GgILaDemGLGKTlqaIali~~l~~ 348 (1019)
|...+..|......+ ..-|+.-+.|+|||..|..++..+..
T Consensus 21 Qe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 21 QEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (620)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 666666666655443 23467789999999999888877755
No 356
>PRK06835 DNA replication protein DnaC; Validated
Probab=67.21 E-value=13 Score=42.64 Aligned_cols=54 Identities=13% Similarity=0.049 Sum_probs=35.4
Q ss_pred CchHHHHHHHHHHH----hhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEe
Q 001731 304 LFPHQREGLRWLWS----LHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVA 359 (1019)
Q Consensus 304 L~phQ~egV~~L~~----~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVv 359 (1019)
.+.++..++.++.. ....+.+.+|.-++|+|||..+.+++..+...+ ..++.+.
T Consensus 161 ~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g--~~V~y~t 218 (329)
T PRK06835 161 PRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRG--KSVIYRT 218 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHCC--CeEEEEE
Confidence 45566666654432 122346778888999999999988888876553 3454443
No 357
>PRK08939 primosomal protein DnaI; Reviewed
Probab=67.14 E-value=15 Score=41.66 Aligned_cols=52 Identities=19% Similarity=0.236 Sum_probs=32.6
Q ss_pred HHHHHHHhhc--CCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccH
Q 001731 311 GLRWLWSLHC--QGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLL 364 (1019)
Q Consensus 311 gV~~L~~~~~--~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl 364 (1019)
+..|+-.... .++|.+|.-++|+|||..+.|++..+...+ .+++++.-..++
T Consensus 143 ~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g--~~v~~~~~~~l~ 196 (306)
T PRK08939 143 ALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKG--VSSTLLHFPEFI 196 (306)
T ss_pred HHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcC--CCEEEEEHHHHH
Confidence 3455543221 345677888999999999998888776443 345555333333
No 358
>PRK09165 replicative DNA helicase; Provisional
Probab=67.07 E-value=38 Score=41.15 Aligned_cols=59 Identities=8% Similarity=-0.137 Sum_probs=37.6
Q ss_pred HHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcC-------------CCCeEEEEeCcccHHHHHHHH
Q 001731 313 RWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSR-------------LIKRALVVAPKTLLSHWIKEL 371 (1019)
Q Consensus 313 ~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~-------------~~~~~LIVvP~sLl~qW~~E~ 371 (1019)
.-+..-+..|.=.||+..+|+|||.-++.++....... ...+++++..---..++...+
T Consensus 208 D~~~gG~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~R~ 279 (497)
T PRK09165 208 DSKLGGLHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLATRI 279 (497)
T ss_pred hhhcCCCCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHHHH
Confidence 33333233344468999999999998887776554321 235888887765555555544
No 359
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=67.03 E-value=12 Score=47.21 Aligned_cols=65 Identities=17% Similarity=0.177 Sum_probs=45.8
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhc-C-CCCeEEEEeCcc-cHHHHHHHHHH
Q 001731 303 MLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHS-R-LIKRALVVAPKT-LLSHWIKELTA 373 (1019)
Q Consensus 303 ~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~-~-~~~~~LIVvP~s-Ll~qW~~E~~k 373 (1019)
.|-|-|+++|.+. .+.+++....|+|||.+.+.-++++... + ...++|+|+.+. ....-...+.+
T Consensus 2 ~Ln~~Q~~av~~~------~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~ 69 (672)
T PRK10919 2 RLNPGQQQAVEFV------TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQ 69 (672)
T ss_pred CCCHHHHHHHhCC------CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHH
Confidence 3778999998642 3456777789999999999888888764 3 235799999974 33444444444
No 360
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=66.63 E-value=22 Score=41.41 Aligned_cols=45 Identities=13% Similarity=0.152 Sum_probs=29.4
Q ss_pred EEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCc----ccHHHHHHHHH
Q 001731 326 ILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK----TLLSHWIKELT 372 (1019)
Q Consensus 326 ILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~----sLl~qW~~E~~ 372 (1019)
+++-+.|+|||-++..++..+...+ .++.+|+-- ..+.||..-..
T Consensus 210 ~lvGptGvGKTTt~akLA~~l~~~g--~~V~lItaDtyR~gAveQLk~yae 258 (407)
T PRK12726 210 SLIGQTGVGKTTTLVKLGWQLLKQN--RTVGFITTDTFRSGAVEQFQGYAD 258 (407)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCCccCccHHHHHHHHhh
Confidence 5666999999988777776654443 456666542 23678866444
No 361
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=65.65 E-value=40 Score=38.60 Aligned_cols=42 Identities=21% Similarity=0.128 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhhcCCC---ceEEEcCCCchHHHHHHHHHHHHhhc
Q 001731 308 QREGLRWLWSLHCQGK---GGILGDDMGLGKTMQICGFLAGLFHS 349 (1019)
Q Consensus 308 Q~egV~~L~~~~~~~~---GgILaDemGLGKTlqaIali~~l~~~ 349 (1019)
|...+..+......++ .-|+.-+.|+|||..+-+++..+...
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~ 63 (355)
T TIGR02397 19 QEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQ 63 (355)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4444544444333332 34778899999998888887776543
No 362
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=65.35 E-value=16 Score=39.34 Aligned_cols=18 Identities=28% Similarity=0.207 Sum_probs=13.9
Q ss_pred CceEEEcCCCchHHHHHH
Q 001731 323 KGGILGDDMGLGKTMQIC 340 (1019)
Q Consensus 323 ~GgILaDemGLGKTlqaI 340 (1019)
...|+.-++|+|||-.|-
T Consensus 51 ~h~lf~GPPG~GKTTLA~ 68 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLAR 68 (233)
T ss_dssp -EEEEESSTTSSHHHHHH
T ss_pred ceEEEECCCccchhHHHH
Confidence 357999999999995443
No 363
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=65.05 E-value=20 Score=41.59 Aligned_cols=61 Identities=23% Similarity=0.190 Sum_probs=42.6
Q ss_pred CCchHHHHHHHHHHHhhc--CCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHH
Q 001731 303 MLFPHQREGLRWLWSLHC--QGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLS 365 (1019)
Q Consensus 303 ~L~phQ~egV~~L~~~~~--~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~ 365 (1019)
+|-+-|+.++.++..... .+...+|.-+-|+|||...=+++..+.. ..+.+++++|+.+..
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~--~~~~~~~~a~tg~AA 63 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRS--RGKKVLVTAPTGIAA 63 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhcc--ccceEEEecchHHHH
Confidence 366789999988866543 3444567779999999865555554433 346899999986543
No 364
>PRK08760 replicative DNA helicase; Provisional
Probab=64.61 E-value=45 Score=40.28 Aligned_cols=55 Identities=16% Similarity=-0.040 Sum_probs=39.0
Q ss_pred hcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHHHHHHHHHHh
Q 001731 319 HCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAV 374 (1019)
Q Consensus 319 ~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~qW~~E~~k~ 374 (1019)
+..+.=.|||..+|.|||..++.++...... ...++++++.---..||...+...
T Consensus 226 ~~~G~LivIaarPg~GKTafal~iA~~~a~~-~g~~V~~fSlEMs~~ql~~Rl~a~ 280 (476)
T PRK08760 226 LQPTDLIILAARPAMGKTTFALNIAEYAAIK-SKKGVAVFSMEMSASQLAMRLISS 280 (476)
T ss_pred CCCCceEEEEeCCCCChhHHHHHHHHHHHHh-cCCceEEEeccCCHHHHHHHHHHh
Confidence 3334445889999999999888887665422 235889998876667777766543
No 365
>PRK14701 reverse gyrase; Provisional
Probab=64.56 E-value=33 Score=47.41 Aligned_cols=77 Identities=17% Similarity=0.197 Sum_probs=53.8
Q ss_pred hhhhHHHHHHHHHhhccCCCceeEecccHHHHHHHHHHHhh------cCCeEEEEECCCCHHHHHHHHHhhhcCCCccEE
Q 001731 659 ISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGS------KGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIF 732 (1019)
Q Consensus 659 ~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~~~L~~------~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~ 732 (1019)
.++|..+..-+...+...|.++||.+..+..+..+...|.. .++.++.++|+++..++.++++.+..+. ..|+
T Consensus 104 GsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~-~dIL 182 (1638)
T PRK14701 104 GMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGD-FDIL 182 (1638)
T ss_pred CCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCC-CCEE
Confidence 56676633222222223677899999999988877777765 2567889999999999999999888764 3344
Q ss_pred EEec
Q 001731 733 LLTS 736 (1019)
Q Consensus 733 LlST 736 (1019)
+.|+
T Consensus 183 V~TP 186 (1638)
T PRK14701 183 VTTA 186 (1638)
T ss_pred EECC
Confidence 4443
No 366
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=64.44 E-value=11 Score=44.46 Aligned_cols=36 Identities=22% Similarity=0.134 Sum_probs=26.2
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHHH
Q 001731 331 MGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSH 366 (1019)
Q Consensus 331 mGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~q 366 (1019)
-|+|||..-..=++.++..++..+++|-+=+..+.+
T Consensus 185 AGSGKT~~La~Kaa~lh~knPd~~I~~Tfftk~L~s 220 (660)
T COG3972 185 AGSGKTELLAHKAAELHSKNPDSRIAFTFFTKILAS 220 (660)
T ss_pred cCCCchhHHHHHHHHHhcCCCCceEEEEeehHHHHH
Confidence 599999865545566666777789999988755543
No 367
>PRK10867 signal recognition particle protein; Provisional
Probab=64.41 E-value=27 Score=41.50 Aligned_cols=34 Identities=26% Similarity=0.262 Sum_probs=24.3
Q ss_pred EEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeC
Q 001731 326 ILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP 360 (1019)
Q Consensus 326 ILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP 360 (1019)
+++-..|+|||.++.-++.++.... .+++++|+=
T Consensus 104 ~~vG~~GsGKTTtaakLA~~l~~~~-G~kV~lV~~ 137 (433)
T PRK10867 104 MMVGLQGAGKTTTAGKLAKYLKKKK-KKKVLLVAA 137 (433)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHhc-CCcEEEEEc
Confidence 5677999999998888877765542 245666553
No 368
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=64.34 E-value=13 Score=47.30 Aligned_cols=67 Identities=16% Similarity=0.078 Sum_probs=46.8
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcC--CCCeEEEEeCcc-cHHHHHHHHHHh
Q 001731 302 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSR--LIKRALVVAPKT-LLSHWIKELTAV 374 (1019)
Q Consensus 302 ~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~--~~~~~LIVvP~s-Ll~qW~~E~~k~ 374 (1019)
..|-|-|+++|.+- .+..++....|+|||.+.+.-++++.... ....+|+|+-+. ....-...+.+.
T Consensus 8 ~~Ln~~Q~~av~~~------~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~ 77 (721)
T PRK11773 8 DSLNDKQREAVAAP------LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQL 77 (721)
T ss_pred HhcCHHHHHHHhCC------CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHH
Confidence 35889999998632 34566777899999999988888887643 234789999874 334444445443
No 369
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=64.32 E-value=14 Score=44.87 Aligned_cols=44 Identities=25% Similarity=0.314 Sum_probs=31.6
Q ss_pred EEEcCCCchHHHHHHHHHHHHhhcC----CCCeEEEEeCcccHHHHHH
Q 001731 326 ILGDDMGLGKTMQICGFLAGLFHSR----LIKRALVVAPKTLLSHWIK 369 (1019)
Q Consensus 326 ILaDemGLGKTlqaIali~~l~~~~----~~~~~LIVvP~sLl~qW~~ 369 (1019)
|+--..|+|||-.|+-=++++.... ..+++||+.|+.+......
T Consensus 230 VVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis 277 (747)
T COG3973 230 VVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYIS 277 (747)
T ss_pred EEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHH
Confidence 4445999999988887666665432 2357999999988765544
No 370
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=64.15 E-value=23 Score=41.53 Aligned_cols=36 Identities=22% Similarity=0.113 Sum_probs=23.9
Q ss_pred EEEcCCCchHHHHHHHHHH-HHhhcCCCCeEEEEeCc
Q 001731 326 ILGDDMGLGKTMQICGFLA-GLFHSRLIKRALVVAPK 361 (1019)
Q Consensus 326 ILaDemGLGKTlqaIali~-~l~~~~~~~~~LIVvP~ 361 (1019)
++.-.-|+|||..++..+. .+.......++||+.|.
T Consensus 5 i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~ 41 (396)
T TIGR01547 5 IAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKV 41 (396)
T ss_pred EEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehh
Confidence 5566899999998664443 33333244688888885
No 371
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=64.10 E-value=34 Score=39.83 Aligned_cols=18 Identities=33% Similarity=0.204 Sum_probs=14.4
Q ss_pred CceEEEcCCCchHHHHHH
Q 001731 323 KGGILGDDMGLGKTMQIC 340 (1019)
Q Consensus 323 ~GgILaDemGLGKTlqaI 340 (1019)
...||.-++|+|||-.|-
T Consensus 49 ~SmIl~GPPG~GKTTlA~ 66 (436)
T COG2256 49 HSMILWGPPGTGKTTLAR 66 (436)
T ss_pred ceeEEECCCCCCHHHHHH
Confidence 467999999999995443
No 372
>PRK05973 replicative DNA helicase; Provisional
Probab=63.96 E-value=20 Score=39.10 Aligned_cols=53 Identities=19% Similarity=0.105 Sum_probs=35.3
Q ss_pred hcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHHHHHHHHHH
Q 001731 319 HCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTA 373 (1019)
Q Consensus 319 ~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~qW~~E~~k 373 (1019)
+..+.-.+|+-.+|+|||..++.++...... ..++++++-----.+-...+..
T Consensus 61 l~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~--Ge~vlyfSlEes~~~i~~R~~s 113 (237)
T PRK05973 61 LKPGDLVLLGARPGHGKTLLGLELAVEAMKS--GRTGVFFTLEYTEQDVRDRLRA 113 (237)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEEeCCHHHHHHHHHH
Confidence 3344556889999999999999888766543 3678888754333343344443
No 373
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=63.82 E-value=8.9 Score=42.83 Aligned_cols=124 Identities=15% Similarity=0.139 Sum_probs=64.5
Q ss_pred eEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcc-c-----HHHHHHHHHH--hcCC--CcEEEEcccccchhhHH
Q 001731 325 GILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKT-L-----LSHWIKELTA--VGLS--AKIREYFGTCVKTRQYE 394 (1019)
Q Consensus 325 gILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~s-L-----l~qW~~E~~k--~~~~--~~v~~~~g~~~~~~~~~ 394 (1019)
|++--+||+||+--.=.++..-+-.+....+++|+|.. . +.-|..++.. +.++ ..+....++
T Consensus 90 ~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFItP~~~mIpp~E~~aW~~Ql~EgNY~~~~~gTi~P~t~t-------- 161 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFITPQKDMIPPQEITAWETQLCEGNYDCGPDGTIVPQTGT-------- 161 (369)
T ss_pred EEEECCCCCCHHHHHHHhhhcCcccCCCCceEEECCCCCCCCHHHHHHHHHHHHhcCCCCCCCCeecccccc--------
Confidence 57778999999952222333323334445789999962 2 3459888865 2221 111111111
Q ss_pred HHHhhhCCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCcchHHhHHhhcCC
Q 001731 395 LQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIP 462 (1019)
Q Consensus 395 ~~~~~~~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~~s~~~kal~~l~ 462 (1019)
-..+.|-+||+-+......--....-. -......+.-.||+|||=.-......+++...+++
T Consensus 162 -----~~P~Fv~msy~e~t~~~NldI~~p~Ni-F~~Aa~~GPiaIImDECMe~Lg~~~~is~fFHAlP 223 (369)
T PF02456_consen 162 -----FRPKFVEMSYDEATSPENLDITNPNNI-FAQAAKKGPIAIIMDECMEKLGSHKSISKFFHALP 223 (369)
T ss_pred -----ccccceeecHhhhCCccccCCCCchHH-HHHHHhcCCEEEEhHHHHHHhcCCCChhHHHhcCc
Confidence 124577888887765443211000000 00001334568999999755445555555555553
No 374
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=63.81 E-value=45 Score=47.24 Aligned_cols=61 Identities=18% Similarity=0.142 Sum_probs=39.7
Q ss_pred cCCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHH---hhcCCCCeEEEEeCcccH
Q 001731 301 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGL---FHSRLIKRALVVAPKTLL 364 (1019)
Q Consensus 301 ~~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l---~~~~~~~~~LIVvP~sLl 364 (1019)
...|-+-|+.++..++. ...+-.+|--..|+|||.+..+++..+ +.. ...+++.++|+.-.
T Consensus 1017 ~~~Lt~~Q~~Ai~~il~--~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~-~g~~v~glApT~~A 1080 (1960)
T TIGR02760 1017 LERLTHGQKQAIHLIIS--TKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES-EQLQVIGLAPTHEA 1080 (1960)
T ss_pred cCCCCHHHHHHHHHHHh--CCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh-cCCeEEEEeChHHH
Confidence 34689999999987755 223445666799999998764433322 222 22468888998543
No 375
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=63.77 E-value=61 Score=33.04 Aligned_cols=50 Identities=20% Similarity=0.252 Sum_probs=32.8
Q ss_pred CCCccEEEEcCCcccCCcc----hHHhHHhhcCCcccEEEeecCCCCCCHHHHH
Q 001731 433 DAIWDYMILDEGHLIKNPS----TQRAKSLLEIPSAHRIIISGTPIQNNLKELW 482 (1019)
Q Consensus 433 ~~~wd~VIlDEAH~iKN~~----s~~~kal~~l~~~~RllLTGTPiqN~l~EL~ 482 (1019)
...+|+||+||.=..-+.. ..+...+..-+...-++|||--.+..+.|+.
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~A 146 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAA 146 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhC
Confidence 3458999999987664322 3455556655666679999986554444443
No 376
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=63.42 E-value=11 Score=45.73 Aligned_cols=65 Identities=23% Similarity=0.198 Sum_probs=45.6
Q ss_pred CchHHHHHHHHHHHhh--------cCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHHHHHHHHHH
Q 001731 304 LFPHQREGLRWLWSLH--------CQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTA 373 (1019)
Q Consensus 304 L~phQ~egV~~L~~~~--------~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~qW~~E~~k 373 (1019)
.....++++.|..... ...+|.||.-+.|+|||+.|-++...+ ..+++-|-...++..|.-|..+
T Consensus 250 ~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~-----~~~fi~v~~~~l~sk~vGesek 322 (494)
T COG0464 250 AKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES-----RSRFISVKGSELLSKWVGESEK 322 (494)
T ss_pred HHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC-----CCeEEEeeCHHHhccccchHHH
Confidence 5667778888876532 234578899999999999877766522 2456655555899999877764
No 377
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=63.18 E-value=38 Score=37.70 Aligned_cols=33 Identities=27% Similarity=0.266 Sum_probs=23.3
Q ss_pred EEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeC
Q 001731 326 ILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP 360 (1019)
Q Consensus 326 ILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP 360 (1019)
++.-.+|.|||.++.-++..+... .+++++|.-
T Consensus 76 ~l~G~~G~GKTTt~akLA~~l~~~--g~~V~li~~ 108 (272)
T TIGR00064 76 LFVGVNGVGKTTTIAKLANKLKKQ--GKSVLLAAG 108 (272)
T ss_pred EEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEeC
Confidence 455699999998887777666433 357777763
No 378
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=63.09 E-value=46 Score=41.10 Aligned_cols=77 Identities=21% Similarity=0.317 Sum_probs=49.6
Q ss_pred eeEecccHHHHHHHHHHHhhcCCeEEEEECCCC-----HHHHHHHHHhhhc----CCCccEEEEec--CCcccccCccc-
Q 001731 680 VLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTK-----ASDRVKIVNDFQE----GDVAPIFLLTS--QVGGLGLTLTK- 747 (1019)
Q Consensus 680 vLIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s-----~~eR~~ii~~F~~----~~~~~V~LlST--~agg~GLNLt~- 747 (1019)
|++|-.+-..+..+.+.+...|+- .+|.|.-+ ..--..+++.|.. +.+ .+|++. .-.++|||+.+
T Consensus 632 vV~FfPSy~yL~~v~k~w~~~gil-~ri~~kK~vF~E~k~~~~dvl~~Ya~a~~~g~G--aiLlaVVGGKlSEGINF~D~ 708 (821)
T KOG1133|consen 632 VVCFFPSYAYLGQVRKRWEQNGIL-ARIVGKKKVFYEPKDTVEDVLEGYAEAAERGRG--AILLAVVGGKLSEGINFSDD 708 (821)
T ss_pred EEEEeccHHHHHHHHHHHHhcchH-HHhhccchhhccCcccHHHHHHHHHHHhhcCCC--eEEEEEeccccccccccccc
Confidence 888888888899999988876642 23333211 0013456666653 332 366663 34568999986
Q ss_pred -CCEEEEcCCCCC
Q 001731 748 -ADRVIVVDPAWN 759 (1019)
Q Consensus 748 -A~~VIi~D~~WN 759 (1019)
++.||.+..|+-
T Consensus 709 LgRaVvvVGlPyP 721 (821)
T KOG1133|consen 709 LGRAVVVVGLPYP 721 (821)
T ss_pred cccEEEEeecCCC
Confidence 889999988874
No 379
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=62.87 E-value=46 Score=39.33 Aligned_cols=56 Identities=7% Similarity=0.005 Sum_probs=32.9
Q ss_pred CccEEEEcCCcccCCcchHH---hHHhhcC----CcccEEEeecCCCCCCHHHHHHHHHhhcC
Q 001731 435 IWDYMILDEGHLIKNPSTQR---AKSLLEI----PSAHRIIISGTPIQNNLKELWALFNFCCP 490 (1019)
Q Consensus 435 ~wd~VIlDEAH~iKN~~s~~---~kal~~l----~~~~RllLTGTPiqN~l~EL~sll~fl~p 490 (1019)
.+++||||=+-+.-+...+. .+.+... +....+.|+||--++.+.+++..+..+.+
T Consensus 299 ~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~ 361 (432)
T PRK12724 299 GSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNY 361 (432)
T ss_pred CCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCC
Confidence 36899999776553222222 1112111 23455779999877777777776665544
No 380
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=62.57 E-value=31 Score=46.28 Aligned_cols=78 Identities=19% Similarity=0.228 Sum_probs=54.7
Q ss_pred chhhhHHHHHHHHHhhccCCCceeEecccHHHHHHHHHHHhh----cCCeE---EEEECCCCHHHHHHHHHhhhcCCCcc
Q 001731 658 NISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGS----KGYKF---LRIDGTTKASDRVKIVNDFQEGDVAP 730 (1019)
Q Consensus 658 ~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~~~L~~----~gi~~---~ridG~~s~~eR~~ii~~F~~~~~~~ 730 (1019)
..++|..+.+-++..+...+.++||.+..+..+..+...+.. .|+.. ..++|+++..+|...++.+.++. ..
T Consensus 102 TGsGKT~f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~-~d 180 (1171)
T TIGR01054 102 TGVGKTTFGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGD-FD 180 (1171)
T ss_pred CCCCHHHHHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCC-CC
Confidence 357777665555544445688999999999988777766654 34443 35799999999988888888764 33
Q ss_pred EEEEecC
Q 001731 731 IFLLTSQ 737 (1019)
Q Consensus 731 V~LlST~ 737 (1019)
+|++|.
T Consensus 181 -IlV~Tp 186 (1171)
T TIGR01054 181 -ILITTT 186 (1171)
T ss_pred -EEEECH
Confidence 444443
No 381
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=62.50 E-value=13 Score=43.84 Aligned_cols=47 Identities=21% Similarity=0.186 Sum_probs=35.3
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHHHHHHHHHH
Q 001731 322 GKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTA 373 (1019)
Q Consensus 322 ~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~qW~~E~~k 373 (1019)
.+|-+|.-+.|.|||+.+.+++... .-.+.-|.|.+|...|.-|-.+
T Consensus 186 ~rglLLfGPpgtGKtmL~~aiAsE~-----~atff~iSassLtsK~~Ge~eK 232 (428)
T KOG0740|consen 186 VRGLLLFGPPGTGKTMLAKAIATES-----GATFFNISASSLTSKYVGESEK 232 (428)
T ss_pred cchhheecCCCCchHHHHHHHHhhh-----cceEeeccHHHhhhhccChHHH
Confidence 3577899999999999887776644 2356678888999988665543
No 382
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=62.29 E-value=48 Score=34.31 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=20.6
Q ss_pred ceEEEcCCCchHHHHHHHHHHHHhhc
Q 001731 324 GGILGDDMGLGKTMQICGFLAGLFHS 349 (1019)
Q Consensus 324 GgILaDemGLGKTlqaIali~~l~~~ 349 (1019)
.-|+.-+.|.|||-.+..++..+...
T Consensus 16 ~~L~~G~~G~gkt~~a~~~~~~l~~~ 41 (188)
T TIGR00678 16 AYLFAGPEGVGKELLALALAKALLCE 41 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 34677799999999888888777643
No 383
>PHA00012 I assembly protein
Probab=61.86 E-value=19 Score=40.94 Aligned_cols=25 Identities=16% Similarity=0.299 Sum_probs=18.5
Q ss_pred EEEcCCCchHHHHHHHHHHHHhhcC
Q 001731 326 ILGDDMGLGKTMQICGFLAGLFHSR 350 (1019)
Q Consensus 326 ILaDemGLGKTlqaIali~~l~~~~ 350 (1019)
++.--+|+|||+-|++-|...+..+
T Consensus 5 lITGkPGSGKSl~aV~~I~~~L~~G 29 (361)
T PHA00012 5 VVTGKLGAGKTLVAVSRIQDKLVKG 29 (361)
T ss_pred EEecCCCCCchHHHHHHHHHHHHcC
Confidence 3455789999999988666665554
No 384
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=61.66 E-value=67 Score=39.65 Aligned_cols=25 Identities=28% Similarity=0.254 Sum_probs=20.5
Q ss_pred eEEEcCCCchHHHHHHHHHHHHhhc
Q 001731 325 GILGDDMGLGKTMQICGFLAGLFHS 349 (1019)
Q Consensus 325 gILaDemGLGKTlqaIali~~l~~~ 349 (1019)
-|+.-+.|.|||..|-+++..+...
T Consensus 41 yLf~Gp~G~GKTt~Ar~lAk~L~c~ 65 (563)
T PRK06647 41 YIFSGPRGVGKTSSARAFARCLNCV 65 (563)
T ss_pred EEEECCCCCCHHHHHHHHHHhhccc
Confidence 4788899999999888888777643
No 385
>PRK06904 replicative DNA helicase; Validated
Probab=61.31 E-value=86 Score=37.84 Aligned_cols=53 Identities=13% Similarity=0.019 Sum_probs=36.9
Q ss_pred hcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHHHHHHHHH
Q 001731 319 HCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELT 372 (1019)
Q Consensus 319 ~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~qW~~E~~ 372 (1019)
+..+.=.|||.-+|+|||.-++.++...... ...++++++.---..++...+-
T Consensus 218 l~~G~LiiIaarPg~GKTafalnia~~~a~~-~g~~Vl~fSlEMs~~ql~~Rll 270 (472)
T PRK06904 218 LQPSDLIIVAARPSMGKTTFAMNLCENAAMA-SEKPVLVFSLEMPAEQIMMRML 270 (472)
T ss_pred cCCCcEEEEEeCCCCChHHHHHHHHHHHHHh-cCCeEEEEeccCCHHHHHHHHH
Confidence 3444455899999999998887776655322 2368999988766666666544
No 386
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=61.20 E-value=63 Score=38.02 Aligned_cols=52 Identities=12% Similarity=0.309 Sum_probs=32.2
Q ss_pred ccEEEEcCCcccCCcc---hHHhHHhhcCC-cccEEEeec--CCCCCC--HHHHHHHHHh
Q 001731 436 WDYMILDEGHLIKNPS---TQRAKSLLEIP-SAHRIIISG--TPIQNN--LKELWALFNF 487 (1019)
Q Consensus 436 wd~VIlDEAH~iKN~~---s~~~kal~~l~-~~~RllLTG--TPiqN~--l~EL~sll~f 487 (1019)
.+++++|-.|.+-+.. ......+..+. ....|+||+ +|-+-+ ..+|.+=+.+
T Consensus 176 ~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~ 235 (408)
T COG0593 176 LDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEW 235 (408)
T ss_pred cCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhc
Confidence 5899999999997653 22344444443 344899999 674432 3355555554
No 387
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=61.07 E-value=61 Score=32.94 Aligned_cols=32 Identities=31% Similarity=0.323 Sum_probs=22.4
Q ss_pred EEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEe
Q 001731 326 ILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVA 359 (1019)
Q Consensus 326 ILaDemGLGKTlqaIali~~l~~~~~~~~~LIVv 359 (1019)
++.-++|+|||..+..++..+...+ .++++|.
T Consensus 4 ~~~G~~G~GKTt~~~~la~~~~~~g--~~v~~i~ 35 (173)
T cd03115 4 LLVGLQGVGKTTTAAKLALYLKKKG--KKVLLVA 35 (173)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCC--CcEEEEE
Confidence 5667999999998888777665442 3454443
No 388
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=60.91 E-value=73 Score=45.21 Aligned_cols=59 Identities=15% Similarity=0.065 Sum_probs=41.3
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccH
Q 001731 302 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLL 364 (1019)
Q Consensus 302 ~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl 364 (1019)
..|-+-|+++|.-++. ...+-.||--..|+|||-++-+++..+... ..++++++|+.-.
T Consensus 428 ~~Ls~~Q~~Av~~il~--s~~~v~ii~G~aGTGKTt~l~~l~~~~~~~--G~~V~~lAPTgrA 486 (1960)
T TIGR02760 428 FALSPSNKDAVSTLFT--STKRFIIINGFGGTGSTEIAQLLLHLASEQ--GYEIQIITAGSLS 486 (1960)
T ss_pred CCCCHHHHHHHHHHHh--CCCCeEEEEECCCCCHHHHHHHHHHHHHhc--CCeEEEEeCCHHH
Confidence 3688899999987765 123445677799999997655555544333 3689999998654
No 389
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=60.75 E-value=38 Score=40.60 Aligned_cols=42 Identities=19% Similarity=0.021 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhhcCCC--c-eEEEcCCCchHHHHHHHHHHHHhhc
Q 001731 308 QREGLRWLWSLHCQGK--G-GILGDDMGLGKTMQICGFLAGLFHS 349 (1019)
Q Consensus 308 Q~egV~~L~~~~~~~~--G-gILaDemGLGKTlqaIali~~l~~~ 349 (1019)
|...+.++......++ . -|+.-+.|+|||..|.+++..+...
T Consensus 22 q~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~ 66 (451)
T PRK06305 22 QDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQ 66 (451)
T ss_pred cHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 5566777666554442 3 4677799999999998888877653
No 390
>PRK12377 putative replication protein; Provisional
Probab=59.98 E-value=25 Score=38.55 Aligned_cols=43 Identities=16% Similarity=0.223 Sum_probs=29.5
Q ss_pred CceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHHHH
Q 001731 323 KGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHW 367 (1019)
Q Consensus 323 ~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~qW 367 (1019)
.+.+|.-++|+|||-.+.+++..+...+ .+++++.-..++...
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g--~~v~~i~~~~l~~~l 144 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKG--RSVIVVTVPDVMSRL 144 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC--CCeEEEEHHHHHHHH
Confidence 4567888999999999998888776543 345555434444443
No 391
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=59.76 E-value=24 Score=38.28 Aligned_cols=50 Identities=16% Similarity=0.103 Sum_probs=34.2
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHHHHHHHHHH
Q 001731 322 GKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTA 373 (1019)
Q Consensus 322 ~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~qW~~E~~k 373 (1019)
+.-.+++-++|+|||..++.+++..... ..++++|+---...+-.+.+..
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~--ge~~lyvs~ee~~~~i~~~~~~ 70 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGIYVALEEHPVQVRRNMAQ 70 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEEEeeCCHHHHHHHHHH
Confidence 4455788899999999998888765543 3578888865444444444443
No 392
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=59.74 E-value=14 Score=40.85 Aligned_cols=45 Identities=18% Similarity=0.198 Sum_probs=28.4
Q ss_pred HHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEe
Q 001731 313 RWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVA 359 (1019)
Q Consensus 313 ~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVv 359 (1019)
.+|......+++.+++-+||+|||-++-+++..+... ..++++|=
T Consensus 118 ~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~--~~~iv~iE 162 (270)
T PF00437_consen 118 EFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPE--DERIVTIE 162 (270)
T ss_dssp HHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTT--TSEEEEEE
T ss_pred HHHhhccccceEEEEECCCccccchHHHHHhhhcccc--ccceEEec
Confidence 4444433445666788899999998877766544333 24555554
No 393
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=58.78 E-value=40 Score=42.82 Aligned_cols=22 Identities=27% Similarity=0.099 Sum_probs=17.0
Q ss_pred CceEEEcCCCchHHHHHHHHHH
Q 001731 323 KGGILGDDMGLGKTMQICGFLA 344 (1019)
Q Consensus 323 ~GgILaDemGLGKTlqaIali~ 344 (1019)
...||.-++|+|||..|-++..
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~ 74 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIAN 74 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4678888999999976665554
No 394
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=58.64 E-value=27 Score=36.46 Aligned_cols=56 Identities=27% Similarity=0.267 Sum_probs=36.6
Q ss_pred CCCccEEEEcCCcccCCc----chHHhHHhhcCCcccEEEeecCCCCCCHHHHHHHHHhh
Q 001731 433 DAIWDYMILDEGHLIKNP----STQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFC 488 (1019)
Q Consensus 433 ~~~wd~VIlDEAH~iKN~----~s~~~kal~~l~~~~RllLTGTPiqN~l~EL~sll~fl 488 (1019)
...|++||+||.-..... -..+...+..-+...-+++||.-.+..+.|+..++.=+
T Consensus 120 ~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADlVTEm 179 (198)
T COG2109 120 DGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADLVTEM 179 (198)
T ss_pred CCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHHHhhc
Confidence 446999999998654332 23344555555667779999976666666666655433
No 395
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=58.54 E-value=19 Score=45.31 Aligned_cols=65 Identities=18% Similarity=0.197 Sum_probs=45.4
Q ss_pred CchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhc-C-CCCeEEEEeCc-ccHHHHHHHHHHh
Q 001731 304 LFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHS-R-LIKRALVVAPK-TLLSHWIKELTAV 374 (1019)
Q Consensus 304 L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~-~-~~~~~LIVvP~-sLl~qW~~E~~k~ 374 (1019)
|-|-|+.+|.+- .+.+++....|+|||.+.+.-+.++... + ....+|+|+.+ .....-...+.+.
T Consensus 2 Ln~~Q~~av~~~------~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~ 69 (664)
T TIGR01074 2 LNPQQQEAVEYV------TGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKT 69 (664)
T ss_pred CCHHHHHHHhCC------CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 678899988532 3456777799999999988888888754 2 33567888776 4445555555543
No 396
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=58.41 E-value=38 Score=38.47 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=17.6
Q ss_pred EEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCc
Q 001731 326 ILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK 361 (1019)
Q Consensus 326 ILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~ 361 (1019)
|+.-.-|+|||..++..+..........+.+|++|.
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~~~ 36 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIAST 36 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEEES
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEecC
Confidence 345578999998755434333333333345555565
No 397
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=58.20 E-value=28 Score=37.17 Aligned_cols=48 Identities=15% Similarity=0.095 Sum_probs=35.3
Q ss_pred eEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHHHHHHHHHHh
Q 001731 325 GILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAV 374 (1019)
Q Consensus 325 gILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~qW~~E~~k~ 374 (1019)
.+++-++|+|||..++.++...... ..++++|+...-..+-.+.+..+
T Consensus 19 ~li~G~~G~GKt~~~~~~~~~~~~~--g~~~~y~s~e~~~~~l~~~~~~~ 66 (224)
T TIGR03880 19 IVVIGEYGTGKTTFSLQFLYQGLKN--GEKAMYISLEEREERILGYAKSK 66 (224)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCCHHHHHHHHHHc
Confidence 3677899999999888887765544 36889998876666666665554
No 398
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=57.95 E-value=23 Score=39.23 Aligned_cols=41 Identities=29% Similarity=0.324 Sum_probs=29.6
Q ss_pred CchHHHHHHHHHHHhhcCCCc-eEEEcCCCchHHHHHHHHHHHHh
Q 001731 304 LFPHQREGLRWLWSLHCQGKG-GILGDDMGLGKTMQICGFLAGLF 347 (1019)
Q Consensus 304 L~phQ~egV~~L~~~~~~~~G-gILaDemGLGKTlqaIali~~l~ 347 (1019)
+.+.|.+.+.++.. ...| .+++-++|+|||-+.-+++..+.
T Consensus 64 ~~~~~~~~l~~~~~---~~~GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 64 LKPENLEIFRKLLE---KPHGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred CCHHHHHHHHHHHh---cCCCEEEEECCCCCcHHHHHHHHHhhhC
Confidence 56778887777654 2333 57888999999987777776653
No 399
>CHL00176 ftsH cell division protein; Validated
Probab=57.00 E-value=40 Score=42.23 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=19.0
Q ss_pred CCceEEEcCCCchHHHHHHHHHHH
Q 001731 322 GKGGILGDDMGLGKTMQICGFLAG 345 (1019)
Q Consensus 322 ~~GgILaDemGLGKTlqaIali~~ 345 (1019)
.+|.+|.-++|+|||..|=+++..
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e 239 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGE 239 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999877666543
No 400
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=56.48 E-value=39 Score=43.17 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=19.6
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHH
Q 001731 322 GKGGILGDDMGLGKTMQICGFLAGL 346 (1019)
Q Consensus 322 ~~GgILaDemGLGKTlqaIali~~l 346 (1019)
..+.||.-+.|+|||..+-++...+
T Consensus 207 ~~n~LLvGppGvGKT~lae~la~~i 231 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHH
Confidence 4677999999999998776665544
No 401
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=56.36 E-value=95 Score=36.87 Aligned_cols=48 Identities=13% Similarity=-0.060 Sum_probs=32.3
Q ss_pred CCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHHHHHH
Q 001731 321 QGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIK 369 (1019)
Q Consensus 321 ~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~qW~~ 369 (1019)
.|.=.+|+-.+|+|||.-++.++...... ...++++++.---..+...
T Consensus 194 ~G~l~vi~g~pg~GKT~~~l~~a~~~a~~-~g~~vl~~SlEm~~~~i~~ 241 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAFALNIAENAAIK-EGKPVAFFSLEMSAEQLAM 241 (434)
T ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHh-CCCeEEEEeCcCCHHHHHH
Confidence 34445889999999999888887765432 1257888887544444333
No 402
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=56.32 E-value=50 Score=39.20 Aligned_cols=33 Identities=15% Similarity=0.025 Sum_probs=23.2
Q ss_pred EEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeC
Q 001731 326 ILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP 360 (1019)
Q Consensus 326 ILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP 360 (1019)
.++-..|+|||-++.-++..+... ..++++|+-
T Consensus 104 ~lvG~~GvGKTTtaaKLA~~l~~~--G~kV~lV~~ 136 (429)
T TIGR01425 104 MFVGLQGSGKTTTCTKLAYYYQRK--GFKPCLVCA 136 (429)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHC--CCCEEEEcC
Confidence 466699999998877777665433 246666665
No 403
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=55.77 E-value=9.7 Score=48.92 Aligned_cols=20 Identities=35% Similarity=0.403 Sum_probs=10.1
Q ss_pred CchhHHHHHHHHhhhhccce
Q 001731 39 GGNEIRDILNDLSARLEILS 58 (1019)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~ 58 (1019)
+..+..++|+||..-.+.+.
T Consensus 548 ~~~~~~~~l~dl~~c~~~~~ 567 (784)
T PF04931_consen 548 GPEEAVDVLDDLQICYEKAF 567 (784)
T ss_pred CChHHHHHHHHHHHHHHHHh
Confidence 33445555666655444443
No 404
>PRK06921 hypothetical protein; Provisional
Probab=55.71 E-value=36 Score=37.69 Aligned_cols=38 Identities=18% Similarity=0.060 Sum_probs=27.2
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeC
Q 001731 322 GKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP 360 (1019)
Q Consensus 322 ~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP 360 (1019)
+.+.+|.-++|+|||..+.+++..+.... ...++.+..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~-g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKK-GVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhc-CceEEEEEH
Confidence 45678888999999998888887776542 245555543
No 405
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=55.34 E-value=41 Score=33.35 Aligned_cols=108 Identities=15% Similarity=0.168 Sum_probs=55.2
Q ss_pred HHHHHHHHHhhccCCCceeEecccHHHHHHHHHHHhhcC----CeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCC
Q 001731 663 ISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKG----YKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQV 738 (1019)
Q Consensus 663 l~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~~~L~~~g----i~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~a 738 (1019)
..++.+|+.+....|+|++|+|.....+..|-+.|-... ++..+...... ...+|+| ++..
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~~~--------------~~~PV~i-~~~~ 79 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTFSPDSFLPHGLAGEPPA--------------ARQPVLI-TWDQ 79 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTSSTT----EEETT-SST--------------T--SEEE-E-TT
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcccCCCCC--------------CCCeEEE-ecCc
Confidence 488999999999999999999999999999999996542 22332211111 1124444 4332
Q ss_pred cccccCcccCCEEEEcCCCCCchhhhhhhhhhhhhCCCCcEEEEEEeeCCCHHHHHHHHHHHH
Q 001731 739 GGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 801 (1019)
Q Consensus 739 gg~GLNLt~A~~VIi~D~~WNp~~~~QaiGRa~RiGQ~k~V~VyrLit~gTiEEkI~~rq~~K 801 (1019)
.. -....++.+|++++.+-+ +..+..| |+-++....- .+-..|..+|
T Consensus 80 ~~--~~~~~~~vLinL~~~~p~--~~~~f~r-----------vieiv~~~~~-~~~~aR~r~r 126 (137)
T PF04364_consen 80 EA--NPNNHADVLINLSGEVPP--FFSRFER-----------VIEIVDQDDE-AKQAARERYR 126 (137)
T ss_dssp S------S--SEEEE--SS--G--GGGG-SE-----------EEEEE-SSHH-HHHHHHHHHH
T ss_pred cc--CCCCCCCEEEECCCCCcc--hhhcccE-----------EEEEecCCHH-HHHHHHHHHH
Confidence 11 233448999999988822 2222232 4555554433 5555555554
No 406
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=54.97 E-value=55 Score=39.58 Aligned_cols=65 Identities=17% Similarity=0.187 Sum_probs=43.2
Q ss_pred HHHHHHHHHh-hcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHHHHHHHHHHhc
Q 001731 309 REGLRWLWSL-HCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVG 375 (1019)
Q Consensus 309 ~egV~~L~~~-~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~qW~~E~~k~~ 375 (1019)
..++..++.- +..+.-.++.-++|.|||..++.|++.....+ .++++|+----..|-...+..++
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~g--e~~~y~s~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANK--ERAILFAYEESRAQLLRNAYSWG 314 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEEeeCCHHHHHHHHHHcC
Confidence 3445444431 22233447888999999999998888776543 57888887666666666666554
No 407
>PRK08840 replicative DNA helicase; Provisional
Probab=54.46 E-value=1.2e+02 Score=36.54 Aligned_cols=52 Identities=12% Similarity=0.020 Sum_probs=35.7
Q ss_pred hcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHHHHHHHH
Q 001731 319 HCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKEL 371 (1019)
Q Consensus 319 ~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~qW~~E~ 371 (1019)
+..+.=.|||.-+|+|||.-++.++...... ...+++++..---..++...+
T Consensus 214 ~~~g~LiviaarPg~GKTafalnia~~~a~~-~~~~v~~fSlEMs~~ql~~Rl 265 (464)
T PRK08840 214 LQGSDLIIVAARPSMGKTTFAMNLCENAAMD-QDKPVLIFSLEMPAEQLMMRM 265 (464)
T ss_pred CCCCceEEEEeCCCCchHHHHHHHHHHHHHh-CCCeEEEEeccCCHHHHHHHH
Confidence 3344445899999999998887776655322 246889988765556665554
No 408
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=54.34 E-value=51 Score=35.70 Aligned_cols=41 Identities=24% Similarity=0.400 Sum_probs=28.8
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCeEEEE-e-CcccHHHHHHHHHH
Q 001731 331 MGLGKTMQICGFLAGLFHSRLIKRALVV-A-PKTLLSHWIKELTA 373 (1019)
Q Consensus 331 mGLGKTlqaIali~~l~~~~~~~~~LIV-v-P~sLl~qW~~E~~k 373 (1019)
=|.|||-.+++++..+...+ +++.+| + |..-+..|.+-..+
T Consensus 11 GGaGKTT~~~~LAs~la~~G--~~V~lIDaDpn~pl~~W~~~a~~ 53 (231)
T PF07015_consen 11 GGAGKTTAAMALASELAARG--ARVALIDADPNQPLAKWAENAQR 53 (231)
T ss_pred CCCcHHHHHHHHHHHHHHCC--CeEEEEeCCCCCcHHHHHHhccc
Confidence 48999988888777776554 456555 3 66778899765543
No 409
>PRK08506 replicative DNA helicase; Provisional
Probab=54.26 E-value=92 Score=37.60 Aligned_cols=51 Identities=12% Similarity=0.075 Sum_probs=35.6
Q ss_pred hcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHHHHHHHH
Q 001731 319 HCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKEL 371 (1019)
Q Consensus 319 ~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~qW~~E~ 371 (1019)
+..+.=.|||..+|.|||.-++.++...... ..++++++.---..++...+
T Consensus 189 ~~~G~LivIaarpg~GKT~fal~ia~~~~~~--g~~V~~fSlEMs~~ql~~Rl 239 (472)
T PRK08506 189 FNKGDLIIIAARPSMGKTTLCLNMALKALNQ--DKGVAFFSLEMPAEQLMLRM 239 (472)
T ss_pred CCCCceEEEEcCCCCChHHHHHHHHHHHHhc--CCcEEEEeCcCCHHHHHHHH
Confidence 3344445899999999999888888776433 35888888765455554444
No 410
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=53.96 E-value=33 Score=37.65 Aligned_cols=50 Identities=18% Similarity=0.155 Sum_probs=35.1
Q ss_pred CCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHHHHHHHHH
Q 001731 321 QGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELT 372 (1019)
Q Consensus 321 ~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~qW~~E~~ 372 (1019)
.+.-.++.-++|+|||+-++.|+...... ..|++.|+-...-..-.+.+.
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~--ge~vlyvs~~e~~~~l~~~~~ 71 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGARE--GEPVLYVSTEESPEELLENAR 71 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhc--CCcEEEEEecCCHHHHHHHHH
Confidence 34445777899999999999988877766 368999987544333333333
No 411
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=53.61 E-value=37 Score=36.32 Aligned_cols=48 Identities=17% Similarity=0.092 Sum_probs=31.5
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHHHHHHHH
Q 001731 322 GKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKEL 371 (1019)
Q Consensus 322 ~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~qW~~E~ 371 (1019)
+.-.+++-++|+|||..+..++...... ..++++|+.-....+.....
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~~~~--g~~~~~is~e~~~~~i~~~~ 67 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKGLRD--GDPVIYVTTEESRESIIRQA 67 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHHhc--CCeEEEEEccCCHHHHHHHH
Confidence 3444778899999999888877655433 35788887654444444333
No 412
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=53.42 E-value=38 Score=36.60 Aligned_cols=38 Identities=16% Similarity=0.199 Sum_probs=28.6
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCc
Q 001731 322 GKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK 361 (1019)
Q Consensus 322 ~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~ 361 (1019)
+.-.+|.-+.|+|||..++.+++.+...+ .+++.|+..
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g--~~~~yi~~e 61 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNG--YSVSYVSTQ 61 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEEeCC
Confidence 44557788999999998888888765443 577777764
No 413
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=53.32 E-value=27 Score=40.38 Aligned_cols=52 Identities=15% Similarity=0.140 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhhcC----CCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCc
Q 001731 307 HQREGLRWLWSLHCQ----GKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK 361 (1019)
Q Consensus 307 hQ~egV~~L~~~~~~----~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~ 361 (1019)
..++|...+..+... |++.+|+-++|+|||-.|+++...+ +..-|+..++-+
T Consensus 31 ~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eL---G~~~PF~~isgS 86 (398)
T PF06068_consen 31 KAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKEL---GEDVPFVSISGS 86 (398)
T ss_dssp HHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHC---TTTS-EEEEEGG
T ss_pred HHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHh---CCCCCeeEcccc
Confidence 456666666665443 4566899999999998887777665 333466665553
No 414
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=52.98 E-value=27 Score=41.50 Aligned_cols=35 Identities=23% Similarity=0.073 Sum_probs=26.0
Q ss_pred HHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHh
Q 001731 313 RWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLF 347 (1019)
Q Consensus 313 ~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~ 347 (1019)
..+......+++.||..++|+|||..|..++..+.
T Consensus 185 e~l~~~L~~~~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 185 ETILKRLTIKKNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred HHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhc
Confidence 34444455678899999999999998877665553
No 415
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=52.90 E-value=79 Score=38.05 Aligned_cols=80 Identities=9% Similarity=0.141 Sum_probs=58.3
Q ss_pred CCceeEecccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCccccc-------CcccCC
Q 001731 677 GHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGL-------TLTKAD 749 (1019)
Q Consensus 677 g~KvLIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GL-------NLt~A~ 749 (1019)
+..+||.+..+..+......|...|+....+.|+.+..++..++.....+. ..++++|........ .+....
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~-~~il~~TPe~l~~~~~~~~~l~~~~~i~ 129 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGK-IKLLYVTPEKCSASNRLLQTLEERKGIT 129 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCC-CCEEEECHHHHcCchhHHHHHHhcCCcC
Confidence 557899999999887777788888999999999999998888888886654 556666654433222 345566
Q ss_pred EEEEcCCC
Q 001731 750 RVIVVDPA 757 (1019)
Q Consensus 750 ~VIi~D~~ 757 (1019)
.||+=+.+
T Consensus 130 ~iViDEaH 137 (470)
T TIGR00614 130 LIAVDEAH 137 (470)
T ss_pred EEEEeCCc
Confidence 66664433
No 416
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=52.48 E-value=22 Score=42.57 Aligned_cols=43 Identities=30% Similarity=0.315 Sum_probs=29.9
Q ss_pred CchHHHHHHHHHHHhhcCCCceEEEc-CCCchHHHHHHHHHHHHhhc
Q 001731 304 LFPHQREGLRWLWSLHCQGKGGILGD-DMGLGKTMQICGFLAGLFHS 349 (1019)
Q Consensus 304 L~phQ~egV~~L~~~~~~~~GgILaD-emGLGKTlqaIali~~l~~~ 349 (1019)
+.|+|...+..+.. ...|-||.- +||+|||.+..+++..+...
T Consensus 242 ~~~~~~~~~~~~~~---~p~GliLvTGPTGSGKTTTLY~~L~~ln~~ 285 (500)
T COG2804 242 MSPFQLARLLRLLN---RPQGLILVTGPTGSGKTTTLYAALSELNTP 285 (500)
T ss_pred CCHHHHHHHHHHHh---CCCeEEEEeCCCCCCHHHHHHHHHHHhcCC
Confidence 46777766655544 456665554 99999999888888776543
No 417
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=51.90 E-value=41 Score=36.16 Aligned_cols=51 Identities=20% Similarity=0.331 Sum_probs=36.1
Q ss_pred CceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHHHHHHHHHHhc
Q 001731 323 KGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVG 375 (1019)
Q Consensus 323 ~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~qW~~E~~k~~ 375 (1019)
.-.++.-++|+|||.-+..+++..... ..+++++.=-.-..+..+.+..+.
T Consensus 26 ~~~~i~G~~GsGKt~l~~~~~~~~~~~--g~~~~y~~~e~~~~~~~~~~~~~g 76 (234)
T PRK06067 26 SLILIEGDHGTGKSVLSQQFVYGALKQ--GKKVYVITTENTSKSYLKQMESVK 76 (234)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHhC--CCEEEEEEcCCCHHHHHHHHHHCC
Confidence 344677899999999998887765443 468888876655566666666543
No 418
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=51.73 E-value=32 Score=43.91 Aligned_cols=54 Identities=22% Similarity=0.178 Sum_probs=40.5
Q ss_pred CCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCC--CCeEEEEeCc
Q 001731 302 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRL--IKRALVVAPK 361 (1019)
Q Consensus 302 ~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~--~~~~LIVvP~ 361 (1019)
..|-|-|+.+|.+. .+..++....|+|||.+.+.-++++..... ...+|+|+-+
T Consensus 3 ~~Ln~~Q~~av~~~------~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT 58 (726)
T TIGR01073 3 AHLNPEQREAVKTT------EGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFT 58 (726)
T ss_pred cccCHHHHHHHhCC------CCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeecc
Confidence 35889999998632 345677779999999999888888876432 3468888876
No 419
>PF12846 AAA_10: AAA-like domain
Probab=51.62 E-value=27 Score=38.53 Aligned_cols=43 Identities=23% Similarity=0.292 Sum_probs=30.2
Q ss_pred CceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHHHH
Q 001731 323 KGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHW 367 (1019)
Q Consensus 323 ~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~qW 367 (1019)
+..++.-.+|+|||..+..++..+...+ .+++|+=|..-...|
T Consensus 2 ~h~~i~G~tGsGKT~~~~~l~~~~~~~g--~~~~i~D~~g~~~~~ 44 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLKNLLEQLIRRG--PRVVIFDPKGDYSPL 44 (304)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHcC--CCEEEEcCCchHHHH
Confidence 4567888999999988887777666655 467777666433333
No 420
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=51.31 E-value=29 Score=39.80 Aligned_cols=35 Identities=20% Similarity=0.112 Sum_probs=25.0
Q ss_pred HHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHH
Q 001731 312 LRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGL 346 (1019)
Q Consensus 312 V~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l 346 (1019)
..||+.....+++.+++-+||+|||-..-+++..+
T Consensus 150 ~~~L~~~v~~~~nili~G~tgSGKTTll~aL~~~i 184 (332)
T PRK13900 150 KEFLEHAVISKKNIIISGGTSTGKTTFTNAALREI 184 (332)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHhhC
Confidence 45565555567888999999999997655555444
No 421
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=50.74 E-value=1.7e+02 Score=36.62 Aligned_cols=24 Identities=21% Similarity=0.133 Sum_probs=18.7
Q ss_pred eEEEcCCCchHHHHHHHHHHHHhh
Q 001731 325 GILGDDMGLGKTMQICGFLAGLFH 348 (1019)
Q Consensus 325 gILaDemGLGKTlqaIali~~l~~ 348 (1019)
-|+.-+.|.|||..|..++..+..
T Consensus 42 yLf~Gp~G~GKtt~A~~lAk~l~c 65 (614)
T PRK14971 42 YLFCGPRGVGKTTCARIFAKTINC 65 (614)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 478889999999877777666643
No 422
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=50.34 E-value=57 Score=37.47 Aligned_cols=36 Identities=19% Similarity=0.256 Sum_probs=23.5
Q ss_pred cEEEEcCCcccCCcchHHhHHhhcCCcccEEEeecCCC
Q 001731 437 DYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPI 474 (1019)
Q Consensus 437 d~VIlDEAH~iKN~~s~~~kal~~l~~~~RllLTGTPi 474 (1019)
..+.+||.|++ ..++.-..+-.+...-.+++-||--
T Consensus 224 TilFiDEiHRF--NksQQD~fLP~VE~G~I~lIGATTE 259 (554)
T KOG2028|consen 224 TILFIDEIHRF--NKSQQDTFLPHVENGDITLIGATTE 259 (554)
T ss_pred eEEEeHHhhhh--hhhhhhcccceeccCceEEEecccC
Confidence 57999999998 3444444444455556667777753
No 423
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=49.66 E-value=44 Score=39.21 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=18.0
Q ss_pred CCCceEEEcCCCchHHHHHHHHHHHH
Q 001731 321 QGKGGILGDDMGLGKTMQICGFLAGL 346 (1019)
Q Consensus 321 ~~~GgILaDemGLGKTlqaIali~~l 346 (1019)
.|..+.+..+.|+|||..+-.++..+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I 192 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAI 192 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhh
Confidence 45567777899999997655544443
No 424
>PRK09183 transposase/IS protein; Provisional
Probab=49.62 E-value=23 Score=39.03 Aligned_cols=41 Identities=15% Similarity=0.111 Sum_probs=27.1
Q ss_pred CCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCccc
Q 001731 321 QGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTL 363 (1019)
Q Consensus 321 ~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sL 363 (1019)
.+.+.+|.-++|+|||..+.++...+...+ .+++++....+
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G--~~v~~~~~~~l 141 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAG--IKVRFTTAADL 141 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEeHHHH
Confidence 366778888999999998887755443332 45665543333
No 425
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=49.58 E-value=54 Score=39.01 Aligned_cols=35 Identities=26% Similarity=0.120 Sum_probs=24.3
Q ss_pred eEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeC
Q 001731 325 GILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP 360 (1019)
Q Consensus 325 gILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP 360 (1019)
.+++-..|+|||.++.-++..+.... ..++++|+=
T Consensus 102 i~~vG~~GsGKTTtaakLA~~l~~~~-g~kV~lV~~ 136 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYYLKKKQ-GKKVLLVAC 136 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhC-CCeEEEEec
Confidence 46778999999998888877764322 245655543
No 426
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=49.34 E-value=91 Score=35.27 Aligned_cols=25 Identities=16% Similarity=0.274 Sum_probs=20.4
Q ss_pred eEEEcCCCchHHHHHHHHHHHHhhc
Q 001731 325 GILGDDMGLGKTMQICGFLAGLFHS 349 (1019)
Q Consensus 325 gILaDemGLGKTlqaIali~~l~~~ 349 (1019)
-++.-+-|.|||..|..++..+...
T Consensus 29 ~Lf~G~~G~Gk~~la~~~a~~l~c~ 53 (313)
T PRK05564 29 HIIVGEDGIGKSLLAKEIALKILGK 53 (313)
T ss_pred EEeECCCCCCHHHHHHHHHHHHcCC
Confidence 3788899999999888888777543
No 427
>PRK04328 hypothetical protein; Provisional
Probab=48.81 E-value=45 Score=36.51 Aligned_cols=49 Identities=16% Similarity=0.100 Sum_probs=31.7
Q ss_pred CceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHHHHHHHHHH
Q 001731 323 KGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTA 373 (1019)
Q Consensus 323 ~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~qW~~E~~k 373 (1019)
.-.++.-++|+|||..++.+++..... ..++++|.--.-..+-.+.+..
T Consensus 24 s~ili~G~pGsGKT~l~~~fl~~~~~~--ge~~lyis~ee~~~~i~~~~~~ 72 (249)
T PRK04328 24 NVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGVYVALEEHPVQVRRNMRQ 72 (249)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEeeCCHHHHHHHHHH
Confidence 334678899999999998888765444 3577777654333333334443
No 428
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=48.47 E-value=80 Score=37.77 Aligned_cols=92 Identities=22% Similarity=0.207 Sum_probs=57.4
Q ss_pred hhhhHHH-HHHHHHhhcc--CCCceeEecccHHHHHHHHHHHhhc-----CCeEEEEECCCCHHHHHHHHHhhhcCCCcc
Q 001731 659 ISCKISF-ILSLLDKLIP--EGHNVLIFSQTRKMLNLIQESIGSK-----GYKFLRIDGTTKASDRVKIVNDFQEGDVAP 730 (1019)
Q Consensus 659 ~S~Kl~~-L~~LL~~~~~--~g~KvLIFsq~~~~ldiL~~~L~~~-----gi~~~ridG~~s~~eR~~ii~~F~~~~~~~ 730 (1019)
.|+|..+ ++-++..+.. .+.++||.+..+..+..+...+... ++++..++|+++...+...+. .+ ..
T Consensus 51 GsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~---~~--~~ 125 (460)
T PRK11776 51 GSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE---HG--AH 125 (460)
T ss_pred CCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc---CC--CC
Confidence 4667643 4445544432 2347899999999888887766542 688899999998765544333 22 33
Q ss_pred EEEEecCCc-----ccccCcccCCEEEEcC
Q 001731 731 IFLLTSQVG-----GLGLTLTKADRVIVVD 755 (1019)
Q Consensus 731 V~LlST~ag-----g~GLNLt~A~~VIi~D 755 (1019)
|++.|.... ...+++.....||+=+
T Consensus 126 IvV~Tp~rl~~~l~~~~~~l~~l~~lViDE 155 (460)
T PRK11776 126 IIVGTPGRILDHLRKGTLDLDALNTLVLDE 155 (460)
T ss_pred EEEEChHHHHHHHHcCCccHHHCCEEEEEC
Confidence 454443221 1356788888887633
No 429
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=48.04 E-value=80 Score=39.11 Aligned_cols=72 Identities=15% Similarity=0.258 Sum_probs=46.8
Q ss_pred CCceeEecccHHHHHHHHHHHhh----cCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCC----c--ccccCcc
Q 001731 677 GHNVLIFSQTRKMLNLIQESIGS----KGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQV----G--GLGLTLT 746 (1019)
Q Consensus 677 g~KvLIFsq~~~~ldiL~~~L~~----~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~a----g--g~GLNLt 746 (1019)
+.++||.+.++..+..+...+.. .++++..++|+.+...+...+.. + ..|++.|... . ...++|.
T Consensus 84 ~~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~---~--~dIiV~TP~rL~~~l~~~~~~~l~ 158 (572)
T PRK04537 84 DPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQ---G--VDVIIATPGRLIDYVKQHKVVSLH 158 (572)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhC---C--CCEEEECHHHHHHHHHhccccchh
Confidence 45899999999988777665543 47889999999987766555532 2 3344444321 1 1235677
Q ss_pred cCCEEEE
Q 001731 747 KADRVIV 753 (1019)
Q Consensus 747 ~A~~VIi 753 (1019)
.+..||+
T Consensus 159 ~v~~lVi 165 (572)
T PRK04537 159 ACEICVL 165 (572)
T ss_pred heeeeEe
Confidence 7777665
No 430
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=48.01 E-value=30 Score=38.95 Aligned_cols=40 Identities=28% Similarity=0.227 Sum_probs=28.2
Q ss_pred CCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHH
Q 001731 321 QGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLS 365 (1019)
Q Consensus 321 ~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~ 365 (1019)
...|++|.-+.|.|||++|=++++.+- --+|+|+-..++.
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg-----~nfl~v~ss~lv~ 204 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMG-----VNFLKVVSSALVD 204 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcC-----CceEEeeHhhhhh
Confidence 457999999999999999888777651 1245555444443
No 431
>PRK06620 hypothetical protein; Validated
Probab=47.65 E-value=1.1e+02 Score=32.82 Aligned_cols=36 Identities=6% Similarity=0.131 Sum_probs=22.4
Q ss_pred ccEEEEcCCcccCCcchHHhHHhhcC-CcccEEEeecCC
Q 001731 436 WDYMILDEGHLIKNPSTQRAKSLLEI-PSAHRIIISGTP 473 (1019)
Q Consensus 436 wd~VIlDEAH~iKN~~s~~~kal~~l-~~~~RllLTGTP 473 (1019)
.++++|||+|.+ ........+..+ .....+++|||-
T Consensus 86 ~d~lliDdi~~~--~~~~lf~l~N~~~e~g~~ilits~~ 122 (214)
T PRK06620 86 YNAFIIEDIENW--QEPALLHIFNIINEKQKYLLLTSSD 122 (214)
T ss_pred CCEEEEeccccc--hHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 378999999965 112233333333 445678999983
No 432
>PTZ00293 thymidine kinase; Provisional
Probab=47.22 E-value=27 Score=37.33 Aligned_cols=35 Identities=20% Similarity=0.221 Sum_probs=25.2
Q ss_pred EEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcc
Q 001731 326 ILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKT 362 (1019)
Q Consensus 326 ILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~s 362 (1019)
++.-+||+|||...|-.+..+... .++++++-|..
T Consensus 8 vi~GpMfSGKTteLLr~i~~y~~a--g~kv~~~kp~~ 42 (211)
T PTZ00293 8 VIIGPMFSGKTTELMRLVKRFTYS--EKKCVVIKYSK 42 (211)
T ss_pred EEECCCCChHHHHHHHHHHHHHHc--CCceEEEEecc
Confidence 567799999997666655544433 36899999974
No 433
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=47.00 E-value=35 Score=39.75 Aligned_cols=37 Identities=11% Similarity=0.120 Sum_probs=23.8
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEE
Q 001731 322 GKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVV 358 (1019)
Q Consensus 322 ~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIV 358 (1019)
++..+++-+||+|||-+.-+++..+.......+++.|
T Consensus 149 ~GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~Ivti 185 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTY 185 (372)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEE
Confidence 3455788899999998777766666443333344433
No 434
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=46.73 E-value=2.7e+02 Score=32.42 Aligned_cols=46 Identities=17% Similarity=0.047 Sum_probs=31.9
Q ss_pred CchHHHHHHHHHHHhhcC---CCceEEEcCCCchHHHHHHHHHHHHhhc
Q 001731 304 LFPHQREGLRWLWSLHCQ---GKGGILGDDMGLGKTMQICGFLAGLFHS 349 (1019)
Q Consensus 304 L~phQ~egV~~L~~~~~~---~~GgILaDemGLGKTlqaIali~~l~~~ 349 (1019)
-|.-|...+...+...-. ..+.++.-.+|+|||.++--++..+...
T Consensus 21 ~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~ 69 (366)
T COG1474 21 HREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEES 69 (366)
T ss_pred ccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhh
Confidence 367788777655543322 2457888999999999877777666544
No 435
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=46.40 E-value=69 Score=37.78 Aligned_cols=58 Identities=21% Similarity=0.138 Sum_probs=35.7
Q ss_pred EEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHHHHHHHHHHhcCCCcEEEEcc
Q 001731 326 ILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFG 385 (1019)
Q Consensus 326 ILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~qW~~E~~k~~~~~~v~~~~g 385 (1019)
+++-=-|+|||-+|.-++.++.. ..+++|+||--.--.--.++++..+....+..|..
T Consensus 104 mmvGLQGsGKTTt~~KLA~~lkk--~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~ 161 (451)
T COG0541 104 LMVGLQGSGKTTTAGKLAKYLKK--KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGS 161 (451)
T ss_pred EEEeccCCChHhHHHHHHHHHHH--cCCceEEEecccCChHHHHHHHHHHHHcCCceecC
Confidence 45667899999888877777766 34567777654333334455555544445544443
No 436
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=45.42 E-value=1.2e+02 Score=35.88 Aligned_cols=87 Identities=13% Similarity=0.190 Sum_probs=52.2
Q ss_pred CCceeEecccHHHHHHHHHHH----hhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCc-----ccccCccc
Q 001731 677 GHNVLIFSQTRKMLNLIQESI----GSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVG-----GLGLTLTK 747 (1019)
Q Consensus 677 g~KvLIFsq~~~~ldiL~~~L----~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~ag-----g~GLNLt~ 747 (1019)
+.++||.+.++..+..+.+.+ ...++++..++|+.....+...+. .+ ..|++.|.... ...+++..
T Consensus 73 ~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~---~~--~~IlV~Tp~rl~~~~~~~~~~~~~ 147 (434)
T PRK11192 73 PPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFS---EN--QDIVVATPGRLLQYIKEENFDCRA 147 (434)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhc---CC--CCEEEEChHHHHHHHHcCCcCccc
Confidence 357999999998776665544 345789999999998776654442 22 23444443211 23456777
Q ss_pred CCEEEEcCC----CCCchhhhhhhh
Q 001731 748 ADRVIVVDP----AWNPSTDNQSVD 768 (1019)
Q Consensus 748 A~~VIi~D~----~WNp~~~~QaiG 768 (1019)
...||+=+. .|......+.+.
T Consensus 148 v~~lViDEah~~l~~~~~~~~~~i~ 172 (434)
T PRK11192 148 VETLILDEADRMLDMGFAQDIETIA 172 (434)
T ss_pred CCEEEEECHHHHhCCCcHHHHHHHH
Confidence 777776332 244444444443
No 437
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=45.30 E-value=46 Score=41.56 Aligned_cols=67 Identities=15% Similarity=0.097 Sum_probs=50.2
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcC----CCCeEEEEeCc-ccHHHHHHHHHH
Q 001731 303 MLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSR----LIKRALVVAPK-TLLSHWIKELTA 373 (1019)
Q Consensus 303 ~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~----~~~~~LIVvP~-sLl~qW~~E~~k 373 (1019)
.|..-|..+...+.. ..=.|+--++|+|||++.+-++..++... ..-|+||||-+ +.+.|...-+-.
T Consensus 378 ildsSq~~A~qs~lt----yelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy~ 449 (1025)
T KOG1807|consen 378 ILDSSQQFAKQSKLT----YELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIYY 449 (1025)
T ss_pred eecHHHHHHHHHHhh----hhhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHHh
Confidence 355679999888876 45568888999999999888777776533 23489999987 677877665543
No 438
>COG4646 DNA methylase [Transcription / DNA replication, recombination, and repair]
Probab=45.22 E-value=9.4 Score=44.43 Aligned_cols=33 Identities=30% Similarity=0.507 Sum_probs=28.8
Q ss_pred CcccEEEeecCCCCCCHHHHHHHHHhhcCCCCC
Q 001731 462 PSAHRIIISGTPIQNNLKELWALFNFCCPELLG 494 (1019)
Q Consensus 462 ~~~~RllLTGTPiqN~l~EL~sll~fl~p~~lg 494 (1019)
+.++.+++||||+.|.+.|+|++-+++.++.+-
T Consensus 472 ~G~~L~l~sgTpi~ntlgem~~vqRyl~~~al~ 504 (637)
T COG4646 472 PGRALVLASGTPITNTLGEMFSVQRYLGAGALY 504 (637)
T ss_pred CCCeEEecCCCchhhhHHhhhhhhhhcCccHHH
Confidence 456778999999999999999999999988543
No 439
>PRK08006 replicative DNA helicase; Provisional
Probab=44.97 E-value=2e+02 Score=34.65 Aligned_cols=53 Identities=11% Similarity=-0.027 Sum_probs=36.1
Q ss_pred hcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHHHHHHHHH
Q 001731 319 HCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELT 372 (1019)
Q Consensus 319 ~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~qW~~E~~ 372 (1019)
+..+.=.|||.-+|+|||.-++.++...... ..++++++..---..++...+.
T Consensus 221 l~~G~LiiIaarPgmGKTafalnia~~~a~~-~g~~V~~fSlEM~~~ql~~Rll 273 (471)
T PRK08006 221 LQPSDLIIVAARPSMGKTTFAMNLCENAAML-QDKPVLIFSLEMPGEQIMMRML 273 (471)
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-cCCeEEEEeccCCHHHHHHHHH
Confidence 3344445899999999998888877665422 2368888887655566555543
No 440
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=44.79 E-value=52 Score=33.93 Aligned_cols=54 Identities=24% Similarity=0.214 Sum_probs=35.3
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHHhhcC--------CCCeEEEEeCcccHHHHHHHHHHhc
Q 001731 322 GKGGILGDDMGLGKTMQICGFLAGLFHSR--------LIKRALVVAPKTLLSHWIKELTAVG 375 (1019)
Q Consensus 322 ~~GgILaDemGLGKTlqaIali~~l~~~~--------~~~~~LIVvP~sLl~qW~~E~~k~~ 375 (1019)
+.=++++-+.|.|||..++.++..+.... ...++|+|..-.-..++.+-+....
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~ 93 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALL 93 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHh
Confidence 34468899999999999888887776421 3458888887655656666665543
No 441
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=44.72 E-value=1.2e+02 Score=35.82 Aligned_cols=73 Identities=19% Similarity=0.227 Sum_probs=47.8
Q ss_pred CCceeEecccHHHHHHHHHHHh----hcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCc-----ccccCccc
Q 001731 677 GHNVLIFSQTRKMLNLIQESIG----SKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVG-----GLGLTLTK 747 (1019)
Q Consensus 677 g~KvLIFsq~~~~ldiL~~~L~----~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~ag-----g~GLNLt~ 747 (1019)
+.++||.+..+..+..+.+.+. ..|+++..+.|+.+.......+ ..+ ..|++.|.... ...++|..
T Consensus 83 ~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l---~~~--~~IlV~TP~~l~~~l~~~~~~l~~ 157 (423)
T PRK04837 83 QPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVL---ESG--VDILIGTTGRLIDYAKQNHINLGA 157 (423)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh---cCC--CCEEEECHHHHHHHHHcCCccccc
Confidence 4579999999998777655443 4488999999988765544333 332 34555554322 12467788
Q ss_pred CCEEEEc
Q 001731 748 ADRVIVV 754 (1019)
Q Consensus 748 A~~VIi~ 754 (1019)
...||+=
T Consensus 158 v~~lViD 164 (423)
T PRK04837 158 IQVVVLD 164 (423)
T ss_pred ccEEEEe
Confidence 8888873
No 442
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=44.43 E-value=18 Score=44.67 Aligned_cols=10 Identities=20% Similarity=-0.051 Sum_probs=4.8
Q ss_pred Cccccccccc
Q 001731 121 GVVESVADEY 130 (1019)
Q Consensus 121 ~~~~~~~~~~ 130 (1019)
|+-.|.-.+.
T Consensus 866 GgW~fL~~~~ 875 (960)
T KOG1189|consen 866 GGWSFLNVES 875 (960)
T ss_pred CCeeeecCCC
Confidence 4455554443
No 443
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=44.06 E-value=53 Score=36.15 Aligned_cols=34 Identities=15% Similarity=0.037 Sum_probs=25.9
Q ss_pred eEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeC
Q 001731 325 GILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP 360 (1019)
Q Consensus 325 gILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP 360 (1019)
.+++-++|+|||..|+.++...... ..++++++-
T Consensus 39 ~lI~G~pGtGKT~l~~qf~~~~a~~--Ge~vlyis~ 72 (259)
T TIGR03878 39 INITGVSDTGKSLMVEQFAVTQASR--GNPVLFVTV 72 (259)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEe
Confidence 3678899999999988887765443 357888873
No 444
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=43.85 E-value=50 Score=44.82 Aligned_cols=60 Identities=20% Similarity=0.189 Sum_probs=43.4
Q ss_pred CchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcC-CCCeEEEEeCcccHHHHHH
Q 001731 304 LFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSR-LIKRALVVAPKTLLSHWIK 369 (1019)
Q Consensus 304 L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~-~~~~~LIVvP~sLl~qW~~ 369 (1019)
+.+-|..+|. ..+.+.++...-|+|||.+.+.-+..+...+ ...++||||=+....++.+
T Consensus 2 ~t~~Q~~ai~------~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~ 62 (1232)
T TIGR02785 2 WTDEQWQAIY------TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMK 62 (1232)
T ss_pred CCHHHHHHHh------CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHH
Confidence 4577988885 3467788999999999998877666555444 2357999998866655533
No 445
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=43.81 E-value=35 Score=44.05 Aligned_cols=11 Identities=27% Similarity=0.314 Sum_probs=6.9
Q ss_pred hHHHHHHHHhh
Q 001731 42 EIRDILNDLSA 52 (1019)
Q Consensus 42 ~~~~~~~~~~~ 52 (1019)
.-|++|..|-+
T Consensus 1611 D~Md~lEe~Fs 1621 (3015)
T KOG0943|consen 1611 DAMDGLEELFS 1621 (3015)
T ss_pred ChhHhHHHHhc
Confidence 35777776644
No 446
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=43.41 E-value=52 Score=38.10 Aligned_cols=45 Identities=16% Similarity=0.015 Sum_probs=30.2
Q ss_pred CchHHHHHHHHHHHhhc----CCCceEEEcCCCchHHHHHHHHHHHHhh
Q 001731 304 LFPHQREGLRWLWSLHC----QGKGGILGDDMGLGKTMQICGFLAGLFH 348 (1019)
Q Consensus 304 L~phQ~egV~~L~~~~~----~~~GgILaDemGLGKTlqaIali~~l~~ 348 (1019)
+..-..+.|.|+..... ..+..+|+-++|+|||..|-+++..+-.
T Consensus 56 ~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 56 MEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 33446666777766443 2344578889999999887777766633
No 447
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=43.36 E-value=30 Score=34.96 Aligned_cols=34 Identities=26% Similarity=0.331 Sum_probs=26.1
Q ss_pred EEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCc
Q 001731 326 ILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK 361 (1019)
Q Consensus 326 ILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~ 361 (1019)
|.+-++|.|||..++.++..+...+ .++.++=|.
T Consensus 2 I~~t~~~~GKT~va~~L~~~l~~~g--~~V~~~kP~ 35 (166)
T TIGR00347 2 VTGTDTGVGKTVASSALAAKLKKAG--YSVGYYKPV 35 (166)
T ss_pred eecCCCCccHHHHHHHHHHHHHHCC--CcEEEEEee
Confidence 4566899999999999999887765 466666443
No 448
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=43.19 E-value=25 Score=40.40 Aligned_cols=51 Identities=27% Similarity=0.240 Sum_probs=33.6
Q ss_pred hhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHHHHHHHHHH
Q 001731 318 LHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTA 373 (1019)
Q Consensus 318 ~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~qW~~E~~k 373 (1019)
+....+|.+|-.++|+|||+.|-++.... ..+++=|.=..+..-|.-|-.+
T Consensus 123 Ll~p~kGiLL~GPpG~GKTmlAKA~Akea-----ga~fInv~~s~lt~KWfgE~eK 173 (386)
T KOG0737|consen 123 LLRPPKGILLYGPPGTGKTMLAKAIAKEA-----GANFINVSVSNLTSKWFGEAQK 173 (386)
T ss_pred cccCCccceecCCCCchHHHHHHHHHHHc-----CCCcceeeccccchhhHHHHHH
Confidence 33456788999999999998777655432 1234444445666788766554
No 449
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=42.56 E-value=1.3e+02 Score=35.90 Aligned_cols=71 Identities=15% Similarity=0.257 Sum_probs=45.6
Q ss_pred CceeEecccHHHHHHHHHHHhh----cCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCC-----cccccCcccC
Q 001731 678 HNVLIFSQTRKMLNLIQESIGS----KGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQV-----GGLGLTLTKA 748 (1019)
Q Consensus 678 ~KvLIFsq~~~~ldiL~~~L~~----~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~a-----gg~GLNLt~A 748 (1019)
.++||.+..+..+..+...+.. .++....+.|+++....... +..+ ..|+++|... -...++|...
T Consensus 76 ~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~~~--~~IiV~TP~rL~~~~~~~~~~l~~v 150 (456)
T PRK10590 76 VRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMK---LRGG--VDVLVATPGRLLDLEHQNAVKLDQV 150 (456)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHH---HcCC--CcEEEEChHHHHHHHHcCCcccccc
Confidence 3799999999987777666553 46788889999886554322 2222 3445555322 1335677777
Q ss_pred CEEEE
Q 001731 749 DRVIV 753 (1019)
Q Consensus 749 ~~VIi 753 (1019)
..||+
T Consensus 151 ~~lVi 155 (456)
T PRK10590 151 EILVL 155 (456)
T ss_pred eEEEe
Confidence 77776
No 450
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=42.49 E-value=16 Score=42.20 Aligned_cols=71 Identities=15% Similarity=0.000 Sum_probs=42.2
Q ss_pred ccccCccccCCCchHHHHHHHHHHHh-hcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHHHHHHH
Q 001731 293 TYMLPGKIGNMLFPHQREGLRWLWSL-HCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKE 370 (1019)
Q Consensus 293 ~~~lp~~i~~~L~phQ~egV~~L~~~-~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~qW~~E 370 (1019)
.|.+|+.+..++.-|- +=++|... .....|.+|.-+.|+|||++|=+++..+ .-++++|....|+..|.-|
T Consensus 120 ~~~~~p~f~dk~~~hi--~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~el-----g~~~i~vsa~eL~sk~vGE 191 (413)
T PLN00020 120 GYYIAPAFMDKVAVHI--AKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKM-----GIEPIVMSAGELESENAGE 191 (413)
T ss_pred ccccCHHHHHHHHHHH--HhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHc-----CCCeEEEEHHHhhcCcCCc
Confidence 4666766554333222 22333221 2334667777899999999888777655 1245666666777767433
No 451
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=42.31 E-value=33 Score=37.08 Aligned_cols=37 Identities=14% Similarity=0.037 Sum_probs=26.9
Q ss_pred ceEEEcCCCchHHHHHHHHHHHHhh----------cCCCCeEEEEeC
Q 001731 324 GGILGDDMGLGKTMQICGFLAGLFH----------SRLIKRALVVAP 360 (1019)
Q Consensus 324 GgILaDemGLGKTlqaIali~~l~~----------~~~~~~~LIVvP 360 (1019)
=++|+-+.|+|||..++.++..+.. ....+++|+++-
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~ 49 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSA 49 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEEC
Confidence 3689999999999988887765431 123457888883
No 452
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.29 E-value=97 Score=37.31 Aligned_cols=95 Identities=14% Similarity=0.208 Sum_probs=72.0
Q ss_pred CceeEecccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCc-ccccCcccCCEEEEcCC
Q 001731 678 HNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVG-GLGLTLTKADRVIVVDP 756 (1019)
Q Consensus 678 ~KvLIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~ag-g~GLNLt~A~~VIi~D~ 756 (1019)
.-+|||-.+---.-.|..+++..++.|+.|+--++...-.++-+-|..+. ..|+|.|-++- =.--.+.++..||+|.|
T Consensus 553 s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr-~~vlLyTER~hffrR~~ikGVk~vVfYqp 631 (698)
T KOG2340|consen 553 SGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGR-KSVLLYTERAHFFRRYHIKGVKNVVFYQP 631 (698)
T ss_pred CceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcC-ceEEEEehhhhhhhhheecceeeEEEecC
Confidence 34788887665566788899999999999988777777777788888877 45677776653 34567889999999999
Q ss_pred CCCchhhhhhhhhhhhh
Q 001731 757 AWNPSTDNQSVDRAYRI 773 (1019)
Q Consensus 757 ~WNp~~~~QaiGRa~Ri 773 (1019)
|-||.-|.--+-=..|.
T Consensus 632 P~~P~FYsEiinm~~k~ 648 (698)
T KOG2340|consen 632 PNNPHFYSEIINMSDKT 648 (698)
T ss_pred CCCcHHHHHHHhhhhhh
Confidence 99998776555444443
No 453
>PRK06321 replicative DNA helicase; Provisional
Probab=42.19 E-value=1.4e+02 Score=36.05 Aligned_cols=57 Identities=11% Similarity=0.030 Sum_probs=36.4
Q ss_pred HHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHHHHHHHH
Q 001731 314 WLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKEL 371 (1019)
Q Consensus 314 ~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~qW~~E~ 371 (1019)
-+..-+..+.=.|||.-+|.|||.-++.++...... ...+++++..----.++...+
T Consensus 218 ~~t~Gl~~G~LiiiaarPgmGKTafal~ia~~~a~~-~g~~v~~fSLEMs~~ql~~Rl 274 (472)
T PRK06321 218 KMINGFSPSNLMILAARPAMGKTALALNIAENFCFQ-NRLPVGIFSLEMTVDQLIHRI 274 (472)
T ss_pred HHhcCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHh-cCCeEEEEeccCCHHHHHHHH
Confidence 333333334445889999999999888876655322 236888887765555555544
No 454
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=42.16 E-value=31 Score=39.54 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=21.2
Q ss_pred CCCceEEEcCCCchHHHHHHHHHHHH
Q 001731 321 QGKGGILGDDMGLGKTMQICGFLAGL 346 (1019)
Q Consensus 321 ~~~GgILaDemGLGKTlqaIali~~l 346 (1019)
.|+|.+++-++|+|||-.|+++...|
T Consensus 64 aGrgiLi~GppgTGKTAlA~gIa~eL 89 (450)
T COG1224 64 AGRGILIVGPPGTGKTALAMGIAREL 89 (450)
T ss_pred cccEEEEECCCCCcHHHHHHHHHHHh
Confidence 35677889999999998888877766
No 455
>PRK07004 replicative DNA helicase; Provisional
Probab=42.16 E-value=1.5e+02 Score=35.77 Aligned_cols=51 Identities=12% Similarity=-0.056 Sum_probs=34.6
Q ss_pred cCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHHHHHHHH
Q 001731 320 CQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKEL 371 (1019)
Q Consensus 320 ~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~qW~~E~ 371 (1019)
..|.=.|||..+|+|||.-++.++...... ...+++++..---..|+...+
T Consensus 211 ~~g~liviaarpg~GKT~~al~ia~~~a~~-~~~~v~~fSlEM~~~ql~~R~ 261 (460)
T PRK07004 211 HGGELIIVAGRPSMGKTAFSMNIGEYVAVE-YGLPVAVFSMEMPGTQLAMRM 261 (460)
T ss_pred CCCceEEEEeCCCCCccHHHHHHHHHHHHH-cCCeEEEEeCCCCHHHHHHHH
Confidence 334445889999999999888877655322 236888887765555554444
No 456
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=41.30 E-value=81 Score=28.55 Aligned_cols=59 Identities=12% Similarity=0.178 Sum_probs=38.9
Q ss_pred CCCceeEeccc------HHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEe
Q 001731 676 EGHNVLIFSQT------RKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLT 735 (1019)
Q Consensus 676 ~g~KvLIFsq~------~~~ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlS 735 (1019)
.+++|+||+.+ =.....+.++|...|+.|..++=....+.|..+.+ .......+++.+.
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~-~~g~~tvP~vfi~ 70 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKE-YSNWPTFPQLYVN 70 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHH-HhCCCCCCEEEEC
Confidence 35789999873 34677888899999999999986555544554444 3333344445544
No 457
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=41.14 E-value=1e+02 Score=35.21 Aligned_cols=124 Identities=15% Similarity=0.141 Sum_probs=65.8
Q ss_pred CchHHHHHHHHHHHHhhcCC------------CC-eEEEEeCcccHHHHHHH---HHHhcCCCcEEEEcccccchhhHHH
Q 001731 332 GLGKTMQICGFLAGLFHSRL------------IK-RALVVAPKTLLSHWIKE---LTAVGLSAKIREYFGTCVKTRQYEL 395 (1019)
Q Consensus 332 GLGKTlqaIali~~l~~~~~------------~~-~~LIVvP~sLl~qW~~E---~~k~~~~~~v~~~~g~~~~~~~~~~ 395 (1019)
|+|||=.++.++..+...+. .+ ..++|.|.+.-..--+| +.+.+| ..+ +.+..... ..
T Consensus 47 GTGKTP~v~~L~~~L~~~G~~~~IlSRGYg~~~~~~~~~v~~~~~~~~~GDEp~lla~~~~-~~V--~V~~dR~~---~~ 120 (326)
T PF02606_consen 47 GTGKTPLVIWLARLLQARGYRPAILSRGYGRKSKGEPILVSDGSDAEEVGDEPLLLARKLP-VPV--IVGPDRVA---AA 120 (326)
T ss_pred CCCchHHHHHHHHHHHhcCCceEEEcCCCCCCCCCCeEEEeCCCChhhhcCHHHHHHHhcC-CcE--EEeCcHHH---HH
Confidence 89999999998888866421 12 27788887744444444 344455 333 33332211 22
Q ss_pred HHhhh--CCCEEEecHHHHHhccccccCCCcccCcCCCCCCCccEEEEcCCcccCCc----chHHhHHhhcCCcccEEEe
Q 001731 396 QYVLQ--DKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNP----STQRAKSLLEIPSAHRIII 469 (1019)
Q Consensus 396 ~~~~~--~~dVvItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlDEAH~iKN~----~s~~~kal~~l~~~~RllL 469 (1019)
..... ..+|+|.==.+ ... . -...+++|++|-.+-+.|. ....-.-...++....+++
T Consensus 121 ~~~~~~~~~dviilDDGf-Qh~-~--------------L~rDl~Ivl~D~~~~~gng~lLPaG~LREp~~~l~rAD~vi~ 184 (326)
T PF02606_consen 121 RAALKEFPADVIILDDGF-QHR-R--------------LKRDLDIVLVDADRPFGNGFLLPAGPLREPLSALKRADAVIV 184 (326)
T ss_pred HHHHHHCCCCEEEEcCCc-ccc-c--------------ccCCcEEEEEeCCCCCcCCccCCCCcccCChhHhCcccEEEE
Confidence 22222 25776653211 100 0 1234688999987766662 2222233344555555777
Q ss_pred ecCCCCCC
Q 001731 470 SGTPIQNN 477 (1019)
Q Consensus 470 TGTPiqN~ 477 (1019)
|+.+....
T Consensus 185 ~~~~~~~~ 192 (326)
T PF02606_consen 185 TGCDASDP 192 (326)
T ss_pred cCCCcchh
Confidence 88876443
No 458
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=40.99 E-value=1.6e+02 Score=29.30 Aligned_cols=86 Identities=20% Similarity=0.216 Sum_probs=55.7
Q ss_pred ceeEecccHHHHHHHHHHHhhcCCeE--EEEECCCCHHHHHHHHHhhhcCCCccEEEEecCCcccccCcccCCEEEEcCC
Q 001731 679 NVLIFSQTRKMLNLIQESIGSKGYKF--LRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDP 756 (1019)
Q Consensus 679 KvLIFsq~~~~ldiL~~~L~~~gi~~--~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~agg~GLNLt~A~~VIi~D~ 756 (1019)
.|=++||+-.+...+...+..+|+.+ ..=.|+...-.-..+++.|.+++..+++++- ++.
T Consensus 3 ~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~dv~~~d~l~~~~~D~~t~~I~ly------------------~E~ 64 (138)
T PF13607_consen 3 GVALISQSGALGTAILDWAQDRGIGFSYVVSVGNEADVDFADLLEYLAEDPDTRVIVLY------------------LEG 64 (138)
T ss_dssp SEEEEES-HHHHHHHHHHHHHTT-EESEEEE-TT-SSS-HHHHHHHHCT-SS--EEEEE------------------ES-
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCeeEEEEeCccccCCHHHHHHHHhcCCCCCEEEEE------------------ccC
Confidence 46789999999988888888876654 5556665555667899999999988777655 555
Q ss_pred CCCchhhhhhhhhhhhhCCCCcEEEEEEe
Q 001731 757 AWNPSTDNQSVDRAYRIGQKKDVVVYRLM 785 (1019)
Q Consensus 757 ~WNp~~~~QaiGRa~RiGQ~k~V~VyrLi 785 (1019)
--||..+.++.-|+.| +|+|.+|+-=
T Consensus 65 ~~d~~~f~~~~~~a~~---~KPVv~lk~G 90 (138)
T PF13607_consen 65 IGDGRRFLEAARRAAR---RKPVVVLKAG 90 (138)
T ss_dssp -S-HHHHHHHHHHHCC---CS-EEEEE--
T ss_pred CCCHHHHHHHHHHHhc---CCCEEEEeCC
Confidence 5678888888888876 4898887654
No 459
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=40.89 E-value=74 Score=38.65 Aligned_cols=42 Identities=19% Similarity=0.124 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhhcCC---CceEEEcCCCchHHHHHHHHHHHHhhc
Q 001731 308 QREGLRWLWSLHCQG---KGGILGDDMGLGKTMQICGFLAGLFHS 349 (1019)
Q Consensus 308 Q~egV~~L~~~~~~~---~GgILaDemGLGKTlqaIali~~l~~~ 349 (1019)
|...+..|......+ .+=++.-+=|+|||-.|=.++.++-..
T Consensus 21 Qe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~ 65 (515)
T COG2812 21 QEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCE 65 (515)
T ss_pred cHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCC
Confidence 555555555443333 345778899999998766666666443
No 460
>PRK05636 replicative DNA helicase; Provisional
Probab=40.75 E-value=1.7e+02 Score=35.60 Aligned_cols=48 Identities=17% Similarity=0.171 Sum_probs=31.5
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHHHHHHH
Q 001731 322 GKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKE 370 (1019)
Q Consensus 322 ~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~qW~~E 370 (1019)
+.=.||+-.+|.|||.-++.++...... ...+++++..---..|+...
T Consensus 265 G~Liiiaarpg~GKT~~al~~a~~~a~~-~g~~v~~fSlEMs~~ql~~R 312 (505)
T PRK05636 265 GQMIIVAARPGVGKSTLALDFMRSASIK-HNKASVIFSLEMSKSEIVMR 312 (505)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEEeeCCHHHHHHH
Confidence 3334889999999998888777654322 23578888765444444433
No 461
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=40.61 E-value=26 Score=38.79 Aligned_cols=27 Identities=33% Similarity=0.475 Sum_probs=21.5
Q ss_pred CCCchHHHHHHHHHHHHhhcCCCCeEEEE
Q 001731 330 DMGLGKTMQICGFLAGLFHSRLIKRALVV 358 (1019)
Q Consensus 330 emGLGKTlqaIali~~l~~~~~~~~~LIV 358 (1019)
-=|.|||.+++.+.+.+...+ +++|+|
T Consensus 9 KGGVGKTT~~~nLA~~La~~G--~rVLlI 35 (274)
T PRK13235 9 KGGIGKSTTTQNTVAGLAEMG--KKVMVV 35 (274)
T ss_pred CCCccHHHHHHHHHHHHHHCC--CcEEEE
Confidence 558999999998888886644 578887
No 462
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=40.59 E-value=35 Score=41.32 Aligned_cols=41 Identities=22% Similarity=0.265 Sum_probs=29.7
Q ss_pred CCchHHHHHHHHHHHhhcCCCce-EEEcCCCchHHHHHHHHHHHH
Q 001731 303 MLFPHQREGLRWLWSLHCQGKGG-ILGDDMGLGKTMQICGFLAGL 346 (1019)
Q Consensus 303 ~L~phQ~egV~~L~~~~~~~~Gg-ILaDemGLGKTlqaIali~~l 346 (1019)
.+.|.|...+.++.. ...|. +++-+||+|||-+.-+++..+
T Consensus 225 g~~~~~~~~l~~~~~---~~~GlilitGptGSGKTTtL~a~L~~l 266 (486)
T TIGR02533 225 GMSPELLSRFERLIR---RPHGIILVTGPTGSGKTTTLYAALSRL 266 (486)
T ss_pred CCCHHHHHHHHHHHh---cCCCEEEEEcCCCCCHHHHHHHHHhcc
Confidence 467888888887765 33443 577799999998776666555
No 463
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=40.42 E-value=36 Score=39.23 Aligned_cols=46 Identities=15% Similarity=0.143 Sum_probs=28.8
Q ss_pred HHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCc
Q 001731 313 RWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK 361 (1019)
Q Consensus 313 ~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~ 361 (1019)
.+|+.....+++.+++-+||+|||-.+-+++..+. ...+++.|=..
T Consensus 153 ~~l~~~v~~~~nilI~G~tGSGKTTll~aLl~~i~---~~~rivtiEd~ 198 (344)
T PRK13851 153 AFLHACVVGRLTMLLCGPTGSGKTTMSKTLISAIP---PQERLITIEDT 198 (344)
T ss_pred HHHHHHHHcCCeEEEECCCCccHHHHHHHHHcccC---CCCCEEEECCC
Confidence 44555555677888999999999976655554432 22355544333
No 464
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=40.35 E-value=26 Score=38.49 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=20.7
Q ss_pred CCCchHHHHHHHHHHHHhhcCCCCeEEEE
Q 001731 330 DMGLGKTMQICGFLAGLFHSRLIKRALVV 358 (1019)
Q Consensus 330 emGLGKTlqaIali~~l~~~~~~~~~LIV 358 (1019)
-=|.|||.+++.++..+... .+++|+|
T Consensus 8 KGGVGKTT~~~nLA~~La~~--g~rVLli 34 (268)
T TIGR01281 8 KGGIGKSTTSSNLSVAFAKL--GKRVLQI 34 (268)
T ss_pred CCcCcHHHHHHHHHHHHHhC--CCeEEEE
Confidence 56899999998888777654 3578777
No 465
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=40.28 E-value=1.4e+02 Score=33.69 Aligned_cols=46 Identities=13% Similarity=0.054 Sum_probs=31.6
Q ss_pred CchHHHHHHHHHHHhhcCCC--ceEEEcCCCchHHHHHHHHHHHHhhcC
Q 001731 304 LFPHQREGLRWLWSLHCQGK--GGILGDDMGLGKTMQICGFLAGLFHSR 350 (1019)
Q Consensus 304 L~phQ~egV~~L~~~~~~~~--GgILaDemGLGKTlqaIali~~l~~~~ 350 (1019)
|...|..++..+......++ .++|... |.||+..|..|+..+....
T Consensus 3 l~~~q~~~~~~L~~~~~~~rl~hAyLf~G-~~G~~~~A~~~A~~llC~~ 50 (290)
T PRK07276 3 LKQKQPKVFQRFQTILEQDRLNHAYLFSG-DFASFEMALFLAQSLFCEQ 50 (290)
T ss_pred HHHHHHHHHHHHHHHHHcCCcceeeeeeC-CccHHHHHHHHHHHHcCCC
Confidence 55667777777776655553 3444444 5789988999888887654
No 466
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair]
Probab=40.12 E-value=42 Score=43.14 Aligned_cols=67 Identities=24% Similarity=0.262 Sum_probs=47.2
Q ss_pred CCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcc-cHHHHHHHHHH
Q 001731 303 MLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKT-LLSHWIKELTA 373 (1019)
Q Consensus 303 ~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~s-Ll~qW~~E~~k 373 (1019)
..-|-|.+++.- ....+-..++-++|+|||-.++-++..+++.-+..++|||+-.. -+.+-.+-+.+
T Consensus 738 ~ft~~qveai~s----g~qpgltmvvgppgtgktd~avqil~~lyhn~p~qrTlivthsnqaln~lfeKi~~ 805 (1320)
T KOG1806|consen 738 KFTPTQVEAILS----GMQPGLTMVVGPPGTGKTDVAVQILSVLYHNSPNQRTLIVTHSNQALNQLFEKIMA 805 (1320)
T ss_pred ccCHHHHHHHHh----cCCCCceeeecCCCCCCcchhhhhhhhhhhcCCCcceEEEEecccchhHHHHHHHh
Confidence 345678887632 22234457788999999999999999998888888898888764 34554444433
No 467
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=39.54 E-value=1.4e+02 Score=36.39 Aligned_cols=90 Identities=20% Similarity=0.362 Sum_probs=62.0
Q ss_pred chhhh-HHHHHHHHHhhc--cCCCc--eeEecccHHHHHHHHHHHhh----c-CCeEEEEECCCCHHHHHHHHHhhhcCC
Q 001731 658 NISCK-ISFILSLLDKLI--PEGHN--VLIFSQTRKMLNLIQESIGS----K-GYKFLRIDGTTKASDRVKIVNDFQEGD 727 (1019)
Q Consensus 658 ~~S~K-l~~L~~LL~~~~--~~g~K--vLIFsq~~~~ldiL~~~L~~----~-gi~~~ridG~~s~~eR~~ii~~F~~~~ 727 (1019)
..|+| +.+++.+|..+. ..... +||.+..++.+..|...+.. . ++.++.+.|+++...+...++. +
T Consensus 75 TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~---~- 150 (513)
T COG0513 75 TGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR---G- 150 (513)
T ss_pred CCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc---C-
Confidence 45777 456677777765 22222 89999999988888877754 3 5778999999997777666655 3
Q ss_pred CccEEEEecC-----Cccc-ccCcccCCEEEE
Q 001731 728 VAPIFLLTSQ-----VGGL-GLTLTKADRVIV 753 (1019)
Q Consensus 728 ~~~V~LlST~-----agg~-GLNLt~A~~VIi 753 (1019)
.. +|++|. .... .+++..+.++|+
T Consensus 151 -~~-ivVaTPGRllD~i~~~~l~l~~v~~lVl 180 (513)
T COG0513 151 -VD-IVVATPGRLLDLIKRGKLDLSGVETLVL 180 (513)
T ss_pred -CC-EEEECccHHHHHHHcCCcchhhcCEEEe
Confidence 23 444443 2333 388888888887
No 468
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=39.40 E-value=54 Score=33.98 Aligned_cols=38 Identities=26% Similarity=0.257 Sum_probs=25.8
Q ss_pred CchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHH
Q 001731 304 LFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLA 344 (1019)
Q Consensus 304 L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~ 344 (1019)
+-+.|...+.++.. .+...+++-++|+|||-..-+++.
T Consensus 10 ~~~~~~~~l~~~v~---~g~~i~I~G~tGSGKTTll~aL~~ 47 (186)
T cd01130 10 FSPLQAAYLWLAVE---ARKNILISGGTGSGKTTLLNALLA 47 (186)
T ss_pred CCHHHHHHHHHHHh---CCCEEEEECCCCCCHHHHHHHHHh
Confidence 34566666665554 566778888999999976544443
No 469
>PRK13531 regulatory ATPase RavA; Provisional
Probab=39.35 E-value=40 Score=40.53 Aligned_cols=39 Identities=13% Similarity=0.135 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHH
Q 001731 308 QREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGL 346 (1019)
Q Consensus 308 Q~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l 346 (1019)
|.+.|.-+......+...+|..++|+|||..|-++....
T Consensus 25 re~vI~lll~aalag~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 25 RSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred cHHHHHHHHHHHccCCCEEEECCCChhHHHHHHHHHHHh
Confidence 445565555555667888999999999999877766544
No 470
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=39.18 E-value=44 Score=37.83 Aligned_cols=74 Identities=22% Similarity=0.166 Sum_probs=42.7
Q ss_pred cccCCCchHHHHHHHHHHHhhcC----CCceEEEc-CCCchHHHHHHHHHHHHhhc---CCCCeEEEEeCc-ccHHHHHH
Q 001731 299 KIGNMLFPHQREGLRWLWSLHCQ----GKGGILGD-DMGLGKTMQICGFLAGLFHS---RLIKRALVVAPK-TLLSHWIK 369 (1019)
Q Consensus 299 ~i~~~L~phQ~egV~~L~~~~~~----~~GgILaD-emGLGKTlqaIali~~l~~~---~~~~~~LIVvP~-sLl~qW~~ 369 (1019)
.++..|+.|=..++.+--..... ....||.+ ++|+|||-.|=+++..+--+ ...+..||=.-. ++...|..
T Consensus 149 ~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFs 228 (423)
T KOG0744|consen 149 NLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFS 228 (423)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHh
Confidence 34455666666655444332111 13445555 99999998777777665322 223345555554 77788876
Q ss_pred HHH
Q 001731 370 ELT 372 (1019)
Q Consensus 370 E~~ 372 (1019)
|=.
T Consensus 229 ESg 231 (423)
T KOG0744|consen 229 ESG 231 (423)
T ss_pred hhh
Confidence 643
No 471
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=39.08 E-value=45 Score=33.86 Aligned_cols=41 Identities=12% Similarity=0.168 Sum_probs=37.7
Q ss_pred hhhhHHHHHHHHHhhccCCCceeEecccHHHHHHHHHHHhh
Q 001731 659 ISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGS 699 (1019)
Q Consensus 659 ~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~~~L~~ 699 (1019)
.+++..++.+|+++....|.|++|.|.....+..|-..|-.
T Consensus 11 ~~~~~~~acrL~~Ka~~~G~rv~I~~~d~~~~~~LD~~LWt 51 (154)
T PRK06646 11 DELLLKSILLLIEKCYYSDLKSVILTADADQQEMLNKNLWT 51 (154)
T ss_pred CChHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhcC
Confidence 57899999999999999999999999999999999999854
No 472
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=39.01 E-value=1.2e+02 Score=38.86 Aligned_cols=61 Identities=20% Similarity=0.204 Sum_probs=42.7
Q ss_pred hhhhHH-HHHHHHHhhcc-CCCceeEecccHHHHHHHHHHHhhc---CCeEEEEECCCCHHHHHHH
Q 001731 659 ISCKIS-FILSLLDKLIP-EGHNVLIFSQTRKMLNLIQESIGSK---GYKFLRIDGTTKASDRVKI 719 (1019)
Q Consensus 659 ~S~Kl~-~L~~LL~~~~~-~g~KvLIFsq~~~~ldiL~~~L~~~---gi~~~ridG~~s~~eR~~i 719 (1019)
.|+|.. +++-+|..+.. ++-++||.+..+..+..+...|... ++++..++|.++..+|..+
T Consensus 61 GSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i 126 (742)
T TIGR03817 61 ASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLRAVRELTLRGVRPATYDGDTPTEERRWA 126 (742)
T ss_pred CCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHHhccCCeEEEEEeCCCCHHHHHHH
Confidence 466643 34455555432 4568999999999877777766653 6788999999998777543
No 473
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=38.80 E-value=89 Score=28.88 Aligned_cols=59 Identities=10% Similarity=0.082 Sum_probs=40.0
Q ss_pred CCCceeEeccc------HHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEe
Q 001731 676 EGHNVLIFSQT------RKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLT 735 (1019)
Q Consensus 676 ~g~KvLIFsq~------~~~ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlS 735 (1019)
..++|+||+.. =.....+..+|...|++|..++=......|..+....... ..+.+.+.
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~-tvP~vfi~ 74 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWP-TIPQLYVK 74 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCC-CCCEEEEC
Confidence 35789999753 2356788889999999999988766666666666554433 34444443
No 474
>PRK10037 cell division protein; Provisional
Probab=38.76 E-value=29 Score=37.84 Aligned_cols=30 Identities=23% Similarity=0.221 Sum_probs=22.6
Q ss_pred EEcCCCchHHHHHHHHHHHHhhcCCCCeEEEE
Q 001731 327 LGDDMGLGKTMQICGFLAGLFHSRLIKRALVV 358 (1019)
Q Consensus 327 LaDemGLGKTlqaIali~~l~~~~~~~~~LIV 358 (1019)
...--|.|||.+++.+...+...+ +++|+|
T Consensus 7 ~n~KGGvGKTT~a~nLA~~La~~G--~rVLlI 36 (250)
T PRK10037 7 QGVRGGVGTTSITAALAWSLQMLG--ENVLVI 36 (250)
T ss_pred ecCCCCccHHHHHHHHHHHHHhcC--CcEEEE
Confidence 344569999999998888776553 578877
No 475
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=38.48 E-value=47 Score=36.26 Aligned_cols=39 Identities=23% Similarity=0.244 Sum_probs=29.1
Q ss_pred CCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCc
Q 001731 321 QGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK 361 (1019)
Q Consensus 321 ~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~ 361 (1019)
.....+++-..|+|||..+..++..+.... ..+.+++|.
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~~~~~f--~~I~l~t~~ 50 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYYLRHKF--DHIFLITPE 50 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcccC--CEEEEEecC
Confidence 345778888999999998888877665443 567777783
No 476
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=38.40 E-value=46 Score=37.02 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=21.5
Q ss_pred CCCceEEEcCCCchHHHHHHHHHHHH
Q 001731 321 QGKGGILGDDMGLGKTMQICGFLAGL 346 (1019)
Q Consensus 321 ~~~GgILaDemGLGKTlqaIali~~l 346 (1019)
.|+..+||-++|+|||-.|+++...+
T Consensus 63 aGravLlaGppgtGKTAlAlaisqEL 88 (456)
T KOG1942|consen 63 AGRAVLLAGPPGTGKTALALAISQEL 88 (456)
T ss_pred cCcEEEEecCCCCchhHHHHHHHHHh
Confidence 46777999999999998888777665
No 477
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=38.25 E-value=30 Score=38.35 Aligned_cols=28 Identities=39% Similarity=0.655 Sum_probs=21.6
Q ss_pred cCCCchHHHHHHHHHHHHhhcCCCCeEEEE
Q 001731 329 DDMGLGKTMQICGFLAGLFHSRLIKRALVV 358 (1019)
Q Consensus 329 DemGLGKTlqaIali~~l~~~~~~~~~LIV 358 (1019)
--=|.|||.+++.+...+...+ +++|+|
T Consensus 8 gKGGVGKTT~a~nLA~~La~~G--~rVLli 35 (279)
T PRK13230 8 GKGGIGKSTTVCNIAAALAESG--KKVLVV 35 (279)
T ss_pred CCCCCcHHHHHHHHHHHHHhCC--CEEEEE
Confidence 3568999999998888886544 578887
No 478
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=38.10 E-value=56 Score=28.78 Aligned_cols=31 Identities=29% Similarity=0.408 Sum_probs=21.3
Q ss_pred EEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEe
Q 001731 327 LGDDMGLGKTMQICGFLAGLFHSRLIKRALVVA 359 (1019)
Q Consensus 327 LaDemGLGKTlqaIali~~l~~~~~~~~~LIVv 359 (1019)
++...|.|||..+..++..+...+ .+++++-
T Consensus 4 ~~g~~G~Gktt~~~~l~~~l~~~g--~~v~~~~ 34 (99)
T cd01983 4 VTGKGGVGKTTLAANLAAALAKRG--KRVLLID 34 (99)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCC--CeEEEEC
Confidence 444559999998888887776532 4565555
No 479
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=37.99 E-value=25 Score=34.58 Aligned_cols=22 Identities=27% Similarity=0.267 Sum_probs=15.2
Q ss_pred eEEEcCCCchHHHHHHHHHHHH
Q 001731 325 GILGDDMGLGKTMQICGFLAGL 346 (1019)
Q Consensus 325 gILaDemGLGKTlqaIali~~l 346 (1019)
++|-+.+|+|||..+.+++..+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~ 23 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL 23 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT
T ss_pred EeeECCCccHHHHHHHHHHHHc
Confidence 5788999999999888776654
No 480
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=37.99 E-value=40 Score=38.72 Aligned_cols=39 Identities=26% Similarity=0.181 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHh------------hcCCCceEEEcCCCchHHHHHHHHHH
Q 001731 306 PHQREGLRWLWSL------------HCQGKGGILGDDMGLGKTMQICGFLA 344 (1019)
Q Consensus 306 phQ~egV~~L~~~------------~~~~~GgILaDemGLGKTlqaIali~ 344 (1019)
.-|.+-++-..++ ....+|.||--++|+|||+.|=|++.
T Consensus 157 ~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~ 207 (406)
T COG1222 157 DEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN 207 (406)
T ss_pred HHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh
Confidence 4566656555442 23458999999999999997766554
No 481
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=37.89 E-value=2.1e+02 Score=36.46 Aligned_cols=61 Identities=30% Similarity=0.214 Sum_probs=37.6
Q ss_pred CCchHHHHHHHHHHHhhcCCCce-EEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCccc
Q 001731 303 MLFPHQREGLRWLWSLHCQGKGG-ILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTL 363 (1019)
Q Consensus 303 ~L~phQ~egV~~L~~~~~~~~Gg-ILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sL 363 (1019)
.+-.-|.+++.-+...+..+.+. +|-.+=|=|||-.+--.++.+.+.....+++|.+|+..
T Consensus 211 ~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~ 272 (758)
T COG1444 211 CLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPA 272 (758)
T ss_pred hcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHH
Confidence 34566888777776666565544 56669999999753322222222222358899999743
No 482
>PRK10436 hypothetical protein; Provisional
Probab=37.82 E-value=47 Score=39.90 Aligned_cols=41 Identities=27% Similarity=0.313 Sum_probs=28.7
Q ss_pred CCchHHHHHHHHHHHhhcCCCce-EEEcCCCchHHHHHHHHHHHH
Q 001731 303 MLFPHQREGLRWLWSLHCQGKGG-ILGDDMGLGKTMQICGFLAGL 346 (1019)
Q Consensus 303 ~L~phQ~egV~~L~~~~~~~~Gg-ILaDemGLGKTlqaIali~~l 346 (1019)
.+-+.|...+.++.. ...|. |++-+||+|||-+..+++..+
T Consensus 201 G~~~~~~~~l~~~~~---~~~GliLvtGpTGSGKTTtL~a~l~~~ 242 (462)
T PRK10436 201 GMTPAQLAQFRQALQ---QPQGLILVTGPTGSGKTVTLYSALQTL 242 (462)
T ss_pred CcCHHHHHHHHHHHH---hcCCeEEEECCCCCChHHHHHHHHHhh
Confidence 356777777776654 23443 567799999998777766665
No 483
>PRK09401 reverse gyrase; Reviewed
Probab=37.72 E-value=1.6e+02 Score=39.72 Aligned_cols=95 Identities=24% Similarity=0.226 Sum_probs=58.6
Q ss_pred chhhhHHHHHHHHHhhccCCCceeEecccHHHHHHHHHHHhhc----CCeEEEEECC--CCHHHHHHHHHhhhcCCCccE
Q 001731 658 NISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSK----GYKFLRIDGT--TKASDRVKIVNDFQEGDVAPI 731 (1019)
Q Consensus 658 ~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~~~L~~~----gi~~~ridG~--~s~~eR~~ii~~F~~~~~~~V 731 (1019)
..+||..+++-++..+...+.++||.+..+..+..+...|... ++.+..+.|+ ++.+++.+....+..+. ..|
T Consensus 104 TGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~-~~I 182 (1176)
T PRK09401 104 TGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGD-FDI 182 (1176)
T ss_pred CCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCC-CCE
Confidence 3577776555444444446889999999999888887777654 4555555544 45677888888888654 234
Q ss_pred EEEecCCccc---ccCcccCCEEEE
Q 001731 732 FLLTSQVGGL---GLTLTKADRVIV 753 (1019)
Q Consensus 732 ~LlST~agg~---GLNLt~A~~VIi 753 (1019)
++.|..-... .+.+...+.||+
T Consensus 183 lV~Tp~rL~~~~~~l~~~~~~~lVv 207 (1176)
T PRK09401 183 LVTTSQFLSKNFDELPKKKFDFVFV 207 (1176)
T ss_pred EEECHHHHHHHHHhccccccCEEEE
Confidence 4444322221 244444666665
No 484
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=37.72 E-value=43 Score=36.60 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=20.1
Q ss_pred cCCCceEEEcCCCchHHHHHHHHHH
Q 001731 320 CQGKGGILGDDMGLGKTMQICGFLA 344 (1019)
Q Consensus 320 ~~~~GgILaDemGLGKTlqaIali~ 344 (1019)
...+|.++.-++|+|||+.|-++++
T Consensus 203 ~pPKGvLmYGPPGTGKTlmARAcAa 227 (424)
T KOG0652|consen 203 RPPKGVLMYGPPGTGKTLMARACAA 227 (424)
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHH
Confidence 3457899999999999998776554
No 485
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=37.53 E-value=47 Score=34.42 Aligned_cols=34 Identities=21% Similarity=0.206 Sum_probs=24.3
Q ss_pred EEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCc
Q 001731 326 ILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK 361 (1019)
Q Consensus 326 ILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~ 361 (1019)
++.-+|++|||...|..+..+... .++++++-|.
T Consensus 5 ~i~GpM~sGKS~eLi~~~~~~~~~--~~~v~~~kp~ 38 (176)
T PF00265_consen 5 FITGPMFSGKSTELIRRIHRYEIA--GKKVLVFKPA 38 (176)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHT--T-EEEEEEES
T ss_pred EEECCcCChhHHHHHHHHHHHHhC--CCeEEEEEec
Confidence 455699999998877766655443 3688888886
No 486
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=37.35 E-value=47 Score=34.74 Aligned_cols=33 Identities=30% Similarity=0.414 Sum_probs=25.3
Q ss_pred EEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeC
Q 001731 326 ILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP 360 (1019)
Q Consensus 326 ILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP 360 (1019)
|.+-++|.|||..+++++..+...+ .++-++-|
T Consensus 5 I~~t~t~vGKT~vslgL~~~l~~~g--~~v~~~KP 37 (199)
T PF13500_consen 5 ITGTDTGVGKTVVSLGLARALRRRG--IKVGYFKP 37 (199)
T ss_dssp EEESSSSSSHHHHHHHHHHHHHHTT--SEEEEEEE
T ss_pred EEeCCCCCCHHHHHHHHHHHHHhCC--CceEEEee
Confidence 5677999999999999998887754 34544444
No 487
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=37.32 E-value=41 Score=34.10 Aligned_cols=51 Identities=16% Similarity=0.221 Sum_probs=32.9
Q ss_pred CccEEEEcCCcccCCcchHHhHHhhcCCcccEEEeecCCCCCCHHHHHHHHHhhc
Q 001731 435 IWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCC 489 (1019)
Q Consensus 435 ~wd~VIlDEAH~iKN~~s~~~kal~~l~~~~RllLTGTPiqN~l~EL~sll~fl~ 489 (1019)
.+|+||+|=...+-+ .. ..+..+.....+++..+|-...+.+...+++++.
T Consensus 67 ~yD~VIiD~pp~~~~---~~-~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~ 117 (169)
T cd02037 67 ELDYLVIDMPPGTGD---EH-LTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFK 117 (169)
T ss_pred CCCEEEEeCCCCCcH---HH-HHHHhccCCCeEEEEECCchhhHHHHHHHHHHHH
Confidence 479999998876521 11 1122223446667777887788888888877764
No 488
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=37.02 E-value=51 Score=32.90 Aligned_cols=111 Identities=15% Similarity=0.131 Sum_probs=68.9
Q ss_pred hhhhHHHHHHHHHhhccCCCceeEecccHHHHHHHHHHHhhcC----CeEEEEECCCCHHHHHHHHHhhhcCCCccEEEE
Q 001731 659 ISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKG----YKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLL 734 (1019)
Q Consensus 659 ~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ldiL~~~L~~~g----i~~~ridG~~s~~eR~~ii~~F~~~~~~~V~Ll 734 (1019)
...+..++.+|+.+....|+||+|+|.....++.|-+.|-... ++..+..+... ...+|+|.
T Consensus 11 ~~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~~~--------------~~~PV~l~ 76 (142)
T PRK05728 11 LSALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEALWTFRDESFLPHGLAGEGPA--------------AGQPVLLT 76 (142)
T ss_pred chhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhcCCCCCcCCCCCcCCCCCC--------------CCCCEEEE
Confidence 3568899999999999999999999999999999999986531 12222111110 12345543
Q ss_pred ecCCcccccCcccCCEEEEcCCCCCchhhhhhhhhhhhhCCCCcEEEEEEeeCCCHHHHHHHHHHHH
Q 001731 735 TSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 801 (1019)
Q Consensus 735 ST~agg~GLNLt~A~~VIi~D~~WNp~~~~QaiGRa~RiGQ~k~V~VyrLit~gTiEEkI~~rq~~K 801 (1019)
. +..-+...++.+|++++.+=+. ..+..| |+-++ ...-+.+-..|..+|
T Consensus 77 ~----~~~~~~~~~~~LinL~~~~p~~--~~~F~R-----------vieiv-~~d~~~~~~aR~r~r 125 (142)
T PRK05728 77 W----PGKRNANHRDLLINLDGAVPAF--AAAFER-----------VVDFV-GYDEAAKQAARERWK 125 (142)
T ss_pred c----CCCCCCCCCcEEEECCCCCcch--hhcccE-----------EEEEe-CCCHHHHHHHHHHHH
Confidence 1 1123556778888888765322 222222 55566 345556666666655
No 489
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=36.79 E-value=44 Score=39.20 Aligned_cols=41 Identities=22% Similarity=0.194 Sum_probs=26.9
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHHHH
Q 001731 322 GKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHW 367 (1019)
Q Consensus 322 ~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~qW 367 (1019)
.+|.+|.-++|+|||..|-+++..+ ..+++.+....++..|
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~~~-----~~~~i~v~~~~l~~~~ 205 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAHET-----NATFIRVVGSELVQKF 205 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHHHh-----CCCEEEeehHHHhHhh
Confidence 4677888999999999877765543 1345555444444433
No 490
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=36.63 E-value=76 Score=39.57 Aligned_cols=54 Identities=19% Similarity=0.191 Sum_probs=37.4
Q ss_pred ccccCccccCCCchHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHh
Q 001731 293 TYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLF 347 (1019)
Q Consensus 293 ~~~lp~~i~~~L~phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~ 347 (1019)
...+|..+.....- |.+++..+......+.+.++.-++|+|||..+-+++..+.
T Consensus 9 ~~~~~~~~~~~viG-~~~a~~~l~~a~~~~~~~ll~G~pG~GKT~la~~la~~l~ 62 (608)
T TIGR00764 9 EIPVPERLIDQVIG-QEEAVEIIKKAAKQKRNVLLIGEPGVGKSMLAKAMAELLP 62 (608)
T ss_pred ccCcchhhHhhccC-HHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHcC
Confidence 34566655555544 4456666666555677889999999999988777766553
No 491
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=36.60 E-value=7.2e+02 Score=30.79 Aligned_cols=60 Identities=10% Similarity=0.203 Sum_probs=47.9
Q ss_pred CCceeEecccHHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEecC
Q 001731 677 GHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQ 737 (1019)
Q Consensus 677 g~KvLIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlST~ 737 (1019)
+..+||.+..+..+......|...|+.+..++|+.+..++..+......+. ..+++++..
T Consensus 53 ~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~-~~il~~tpe 112 (591)
T TIGR01389 53 KGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGE-LKLLYVAPE 112 (591)
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCC-CCEEEEChh
Confidence 456888899998877777788888999999999999999998888887766 445555543
No 492
>PRK13766 Hef nuclease; Provisional
Probab=36.44 E-value=4e+02 Score=34.28 Aligned_cols=116 Identities=17% Similarity=0.196 Sum_probs=67.4
Q ss_pred cchhhhHHHHHHHHHh-hccCCCceeEecccHHHHHHHHHHHhhc-C---CeEEEEECCCCHHHHHHHHHhhhcCCCccE
Q 001731 657 DNISCKISFILSLLDK-LIPEGHNVLIFSQTRKMLNLIQESIGSK-G---YKFLRIDGTTKASDRVKIVNDFQEGDVAPI 731 (1019)
Q Consensus 657 ~~~S~Kl~~L~~LL~~-~~~~g~KvLIFsq~~~~ldiL~~~L~~~-g---i~~~ridG~~s~~eR~~ii~~F~~~~~~~V 731 (1019)
+..+||.....-++.. +...+.++||.+..+.........+... + .++..++|.++..+|.++... ..|
T Consensus 37 ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~~------~~i 110 (773)
T PRK13766 37 PTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWEK------AKV 110 (773)
T ss_pred CCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHhC------CCE
Confidence 3457787643333322 2346789999999988776665555542 3 478899999998888665532 245
Q ss_pred EEEecCCcc-----cccCcccCCEEEEcCCCCCchh-hhhhhhhhhhhCCCCc
Q 001731 732 FLLTSQVGG-----LGLTLTKADRVIVVDPAWNPST-DNQSVDRAYRIGQKKD 778 (1019)
Q Consensus 732 ~LlST~agg-----~GLNLt~A~~VIi~D~~WNp~~-~~QaiGRa~RiGQ~k~ 778 (1019)
+++|..... .-+++...+.||+-+.+--... -.-.+.+.+|.....+
T Consensus 111 iv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~ 163 (773)
T PRK13766 111 IVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNP 163 (773)
T ss_pred EEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCC
Confidence 666654332 2345667777777665532111 1123445555444433
No 493
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=36.35 E-value=51 Score=31.94 Aligned_cols=39 Identities=15% Similarity=0.191 Sum_probs=30.2
Q ss_pred ccCCCceeEeccc-HHHHHHHHHHHhhcCCeEEEEECCCC
Q 001731 674 IPEGHNVLIFSQT-RKMLNLIQESIGSKGYKFLRIDGTTK 712 (1019)
Q Consensus 674 ~~~g~KvLIFsq~-~~~ldiL~~~L~~~gi~~~ridG~~s 712 (1019)
..++.+++|||+. -.........|...|+++..++|++.
T Consensus 83 i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~~v~~L~GG~~ 122 (128)
T cd01520 83 LERDPKLLIYCARGGMRSQSLAWLLESLGIDVPLLEGGYK 122 (128)
T ss_pred cCCCCeEEEEeCCCCccHHHHHHHHHHcCCceeEeCCcHH
Confidence 3567889999973 34455666888888999999999975
No 494
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=36.32 E-value=1.4e+02 Score=25.43 Aligned_cols=57 Identities=16% Similarity=0.225 Sum_probs=39.6
Q ss_pred ceeEeccc-HHHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHHhhhcCCCccEEEEe
Q 001731 679 NVLIFSQT-RKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLT 735 (1019)
Q Consensus 679 KvLIFsq~-~~~ldiL~~~L~~~gi~~~ridG~~s~~eR~~ii~~F~~~~~~~V~LlS 735 (1019)
|+.||+.. =.....+...|...|+.|..++-......++++.+........+++++.
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~ 58 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIG 58 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEEC
Confidence 35666643 2456777888889999999999887777777777666544245666655
No 495
>PRK11823 DNA repair protein RadA; Provisional
Probab=36.27 E-value=1.9e+02 Score=34.61 Aligned_cols=50 Identities=22% Similarity=0.230 Sum_probs=35.0
Q ss_pred ceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHHHHHHHHHHhc
Q 001731 324 GGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVG 375 (1019)
Q Consensus 324 GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~qW~~E~~k~~ 375 (1019)
-.+|+-++|.|||..++.++..+... ..++|.|.----..|+.....++.
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~a~~--g~~vlYvs~Ees~~qi~~ra~rlg 131 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARLAAA--GGKVLYVSGEESASQIKLRAERLG 131 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccccHHHHHHHHHHcC
Confidence 34688899999999888887766532 357888886655566655555443
No 496
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=35.99 E-value=89 Score=33.32 Aligned_cols=37 Identities=14% Similarity=0.065 Sum_probs=24.2
Q ss_pred CCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeC
Q 001731 322 GKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAP 360 (1019)
Q Consensus 322 ~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP 360 (1019)
+...+|.-+.|+|||-.+.++....... ..+++++..
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~--~~~~~~i~~ 78 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYG--GRNARYLDA 78 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEEeh
Confidence 4566888899999998777666554432 234554443
No 497
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=35.87 E-value=42 Score=39.55 Aligned_cols=42 Identities=19% Similarity=0.196 Sum_probs=27.4
Q ss_pred CCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHHHH
Q 001731 321 QGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHW 367 (1019)
Q Consensus 321 ~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~qW 367 (1019)
..+|.+|.-+.|+|||..+-+++..+ ..+++.+.+..++..|
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l-----~~~fi~i~~s~l~~k~ 219 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHT-----TATFIRVVGSEFVQKY 219 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhc-----CCCEEEEehHHHHHHh
Confidence 35788899999999998776655432 2345555554444444
No 498
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=35.74 E-value=35 Score=37.60 Aligned_cols=28 Identities=21% Similarity=0.329 Sum_probs=21.9
Q ss_pred cCCCchHHHHHHHHHHHHhhcCCCCeEEEE
Q 001731 329 DDMGLGKTMQICGFLAGLFHSRLIKRALVV 358 (1019)
Q Consensus 329 DemGLGKTlqaIali~~l~~~~~~~~~LIV 358 (1019)
.--|.|||.+++.++..+...+ +++|+|
T Consensus 9 ~KGGVGKTT~~~nLA~~la~~G--~kVLli 36 (270)
T PRK13185 9 GKGGIGKSTTSSNLSAAFAKLG--KKVLQI 36 (270)
T ss_pred CCCCCCHHHHHHHHHHHHHHCC--CeEEEE
Confidence 4679999999988888776543 578877
No 499
>PRK07773 replicative DNA helicase; Validated
Probab=35.68 E-value=87 Score=40.97 Aligned_cols=125 Identities=13% Similarity=0.107 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhhcCCCceEEEcCCCchHHHHHHHHHHHHhhcCCCCeEEEEeCcccHHHHHHHHHHhcCCCcEEEEcc
Q 001731 306 PHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFG 385 (1019)
Q Consensus 306 phQ~egV~~L~~~~~~~~GgILaDemGLGKTlqaIali~~l~~~~~~~~~LIVvP~sLl~qW~~E~~k~~~~~~v~~~~g 385 (1019)
|.-..++..+..-+..+.=.|||..+|+|||..++.++...... ...+++++.----..|....+.....+.....+..
T Consensus 201 ~TG~~~LD~l~~Gl~~G~livIagrPg~GKT~fal~ia~~~a~~-~~~~V~~fSlEms~~ql~~R~~s~~~~i~~~~i~~ 279 (886)
T PRK07773 201 PTGFTELDAMTNGLHPGQLIIVAARPSMGKTTFGLDFARNCAIR-HRLAVAIFSLEMSKEQLVMRLLSAEAKIKLSDMRS 279 (886)
T ss_pred cCChhHhccccCCCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHh-cCCeEEEEecCCCHHHHHHHHHHHhcCCCHHHHhc
Q ss_pred cccchhhHHHHH----hhhCCCEEE-----ecHHHHHhccccccCCCcccCcCCCCCCCccEEEEc
Q 001731 386 TCVKTRQYELQY----VLQDKGVLL-----TTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILD 442 (1019)
Q Consensus 386 ~~~~~~~~~~~~----~~~~~dVvI-----tTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIlD 442 (1019)
..-......... .+....+.| .|.+.++.....+. ...+.++||||
T Consensus 280 g~l~~~~~~~~~~a~~~l~~~~i~i~d~~~~~i~~i~~~~r~~~-----------~~~~~~lvvID 334 (886)
T PRK07773 280 GRMSDDDWTRLARAMGEISEAPIFIDDTPNLTVMEIRAKARRLR-----------QEANLGLIVVD 334 (886)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH-----------HhcCCCEEEEc
No 500
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=35.67 E-value=36 Score=36.06 Aligned_cols=25 Identities=32% Similarity=0.411 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHHHhhcCCCCeEEEE
Q 001731 332 GLGKTMQICGFLAGLFHSRLIKRALVV 358 (1019)
Q Consensus 332 GLGKTlqaIali~~l~~~~~~~~~LIV 358 (1019)
|.|||.++..++..+...+ +++|||
T Consensus 10 GvGKTt~~~nLA~~la~~G--~rvLli 34 (212)
T cd02117 10 GIGKSTTSQNLSAALAEMG--KKVLQV 34 (212)
T ss_pred cCcHHHHHHHHHHHHHHCC--CcEEEE
Done!