Query 001731
Match_columns 1019
No_of_seqs 466 out of 2564
Neff 7.2
Searched_HMMs 29240
Date Tue Mar 26 16:59:19 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001731.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1027-1031//hhsearch_pdb/001731hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z3i_X Similar to RAD54-like; 1.0 1 1 698.8 41.1 514 293-844 45-583 (644)
2 3mwy_W Chromo domain-containin 1.0 1 1 670.3 42.5 480 300-833 233-736 (800)
3 1z63_A Helicase of the SNF2/RA 1.0 1 1 616.2 39.0 462 297-834 31-500 (500)
4 3dmq_A RNA polymerase-associat 1.0 1 1 486.5 21.4 446 300-810 150-637 (968)
5 1wp9_A ATP-dependent RNA helic 1.0 1 1 393.3 28.7 439 302-806 8-493 (494)
6 4a2w_A RIG-I, retinoic acid in 1.0 1 1 359.4 30.5 453 301-811 246-771 (936)
7 4a2q_A RIG-I, retinoic acid in 1.0 1 1 357.6 30.9 465 301-811 246-771 (797)
8 2fwr_A DNA repair protein RAD2 1.0 1 1 355.9 21.2 377 301-804 91-470 (472)
9 1z5z_A Helicase of the SNF2/RA 1.0 1 1 347.6 23.3 252 537-834 12-271 (271)
10 4a2p_A RIG-I, retinoic acid in 1.0 1 1 335.7 39.7 464 302-811 6-530 (556)
No 1
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=698.83 Aligned_cols=514 Identities=31% Similarity=0.529 Sum_probs=427.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHH-----CCCCCEEEECCCCCHHHHHHHHHHHHHHHCC-----CCCEEEEEECCC
Q ss_conf 644692013898468999999999842-----2788609983998438999999999984639-----999089993761
Q 001731 293 TYMLPGKIGNMLFPHQREGLRWLWSLH-----CQGKGGILGDDMGLGKTMQICGFLAGLFHSR-----LIKRALVVAPKT 362 (1019)
Q Consensus 293 ~~~lp~~i~~~L~phQ~egV~wL~~~~-----~~~~GgILaDemGLGKTlqaiali~~l~~~~-----~~k~vLIVvP~s 362 (1019)
...+++.+...|+|||++||.||+..+ ..+.||||||+||+|||+|+|+++..+.... ..+++|||||++
T Consensus 45 ~~~~~p~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~s 124 (644)
T 1z3i_X 45 HVVVDPVLSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSS 124 (644)
T ss_dssp CEECCHHHHTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHH
T ss_pred EEEECHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECHH
T ss_conf 17518564003519999999999984233544588875961078742999999999999974866567778579996589
Q ss_pred CHHHHHHHHHHHCCC-CCEEEECCCCCCHHHHHHHHHHH------CCCEEEECHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 089999999993579-73899716441024578899650------78789841899972011123887656768988777
Q 001731 363 LLSHWIKELTAVGLS-AKIREYFGTCVKTRQYELQYVLQ------DKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAI 435 (1019)
Q Consensus 363 Ll~qW~~El~k~~~~-~~v~~~~g~~~~~~~~~~~~~~~------~~dViItTy~~l~~~~~~l~~~~~~~~~~~~~~~~ 435 (1019)
++.||..||.+|++. ..+..+.+.........+..+.. .++|+|+||++++.+...+ ....
T Consensus 125 ll~qW~~E~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l------------~~~~ 192 (644)
T 1z3i_X 125 LVRNWYNEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVL------------HKGK 192 (644)
T ss_dssp HHHHHHHHHHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTTT------------TTSC
T ss_pred HHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHH------------HCCC
T ss_conf 9887999999975887259998089889999999999873377778757996389987657875------------0488
Q ss_pred CCEEEECCCCCCCCCCHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCH
Q ss_conf 02899827854589613786874307866179963489989989999999752699889937899882000003787310
Q 001731 436 WDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHA 515 (1019)
Q Consensus 436 wd~VIiDEAH~iKN~~s~~~kal~~l~a~~RilLTGTPiqN~l~EL~sLl~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a 515 (1019)
|++||+||||++||+.++.++++..+++.+||+|||||+||++.|+|++++|+.|+.+++...|...|..|+..+....+
T Consensus 193 ~~~vI~DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~ 272 (644)
T 1z3i_X 193 VGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADA 272 (644)
T ss_dssp CCEEEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTC
T ss_pred CCEEEEECCEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHCCCCCC
T ss_conf 65799878622478045999999855567379984673458899999999861887689999999863261541677677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHC----
Q ss_conf 0588884289999999986799998631000356754322336866238999728999999999999569876104----
Q 001731 516 LDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAF---- 591 (1019)
Q Consensus 516 ~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~Ls~~Qr~lY~~~l~~~~~~~~~---- 591 (1019)
+..+...+......|+..+.||++||++.++. ..||++.+.+++|+|++.|+.+|+.++.........
T Consensus 273 ~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~--------~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~ 344 (644)
T 1z3i_X 273 SDKDRAAGEQKLQELISIVNRCLIRRTSDILS--------KYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGK 344 (644)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHEECCCGGGGG--------GTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 88899999999999999988999871087676--------4279836999983799899999999999899999876276
Q ss_pred -CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf -8994799999999812913443555655641024789946799999999899653211246631010231699999999
Q 001731 592 -DGSPLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLL 670 (1019)
Q Consensus 592 -~~~~l~~l~~Lrkic~hP~Ll~~~~~~~~~~~~~~~~~~e~~~~~e~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL 670 (1019)
....+..++.||++|+||.++........ .+.... .................|+|+..+..++
T Consensus 345 ~~~~~l~~l~~Lrk~c~hp~l~~~~~~~~~-~~~~~~---------------~~~~~~~~~~~~~~~~~s~K~~~l~~ll 408 (644)
T 1z3i_X 345 ISVSSLSSITSLKKLCNHPALIYEKCLTGE-EGFDGA---------------LDLFPQNYSTKAVEPQLSGKMLVLDYIL 408 (644)
T ss_dssp CCHHHHHHHHHHHHHHHCTHHHHHHHHHTC-TTCTTG---------------GGTSCSSCCSSSCCGGGSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHCCC-CHHHHH---------------HHHCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 214599999999999579998888874154-003557---------------7645421110005701174899999999
Q ss_pred HHHCC-CCCCEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCC-CCEEEEECCCCCCCCCCCCC
Q ss_conf 86644-99913474151999999999985249819999788897889999996406999-55899922776434485567
Q 001731 671 DKLIP-EGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDV-APIFLLTSQVGGLGLTLTKA 748 (1019)
Q Consensus 671 ~~~~~-~g~KvLIFsq~~~~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~~-~~VlLlST~agg~GLNLt~A 748 (1019)
..+.. .++|+||||+++.++++|+..|...|+.+.+++|+++..+|++++++|+++.. .++||+||++||+||||+.|
T Consensus 409 ~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a 488 (644)
T 1z3i_X 409 AMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGA 488 (644)
T ss_dssp HHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTE
T ss_pred HHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCC
T ss_conf 99864699879999805999999999999779978998399999999999999639999967999844556678465238
Q ss_pred CEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCHHHHHHHH
Q ss_conf 98999099999014655544443419978489999960899999999999999768989820410-00247998899987
Q 001731 749 DRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKE-QIRYFSQQDLRELL 827 (1019)
Q Consensus 749 ~~VIi~D~~WNp~~~~QaiGRa~RiGQ~k~V~VyrLit~gTIEEkI~~rq~~K~~l~~~~~~~~~-~~r~fs~~dL~eLf 827 (1019)
++||+||+||||+.+.||+||+||+||+++|+||+|++.+|+||+|+++|..|..++..++++.. ..+.|+.++|++||
T Consensus 489 ~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K~~l~~~v~~~~~~~~~~~~~~~l~~Lf 568 (644)
T 1z3i_X 489 NRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQDVERHFSLGELRELF 568 (644)
T ss_dssp EEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHTSCCCCSCSSSCCCSSCHHHHHHHT
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHH
T ss_conf 98999799998137999988403228987269999887988999999999999999999856860543378999999986
Q ss_pred CCCCCCCCCHHHHHHHH
Q ss_conf 49999987304489876
Q 001731 828 SLPKQGFDVSLTQQQLH 844 (1019)
Q Consensus 828 ~l~~~~~~~s~tq~~~~ 844 (1019)
++... ..+.|...+.
T Consensus 569 ~~~~~--~~~~t~~~~~ 583 (644)
T 1z3i_X 569 SLNEK--TLSDTHDRFR 583 (644)
T ss_dssp CCCSS--CSCHHHHHHT
T ss_pred CCCCC--CCCHHHHHHH
T ss_conf 78987--6322566650
No 2
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=670.28 Aligned_cols=480 Identities=31% Similarity=0.466 Sum_probs=396.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHH-CCCCCEEEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf 1389846899999999984227886099839984389999999999846-399990899937610899999999935797
Q 001731 300 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFH-SRLIKRALVVAPKTLLSHWIKELTAVGLSA 378 (1019)
Q Consensus 300 i~~~L~phQ~egV~wL~~~~~~~~GgILaDemGLGKTlqaiali~~l~~-~~~~k~vLIVvP~sLl~qW~~El~k~~~~~ 378 (1019)
....|+|||++||+||+..+..+.||||||+||+|||+|+++++..+.. ....+++|||||.+++.||..||.+|+|..
T Consensus 233 ~~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~sll~qW~~E~~~~~p~~ 312 (800)
T 3mwy_W 233 KGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFEKWAPDL 312 (800)
T ss_dssp CSSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTTTHHHHHHHHHHHSTTC
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCC
T ss_conf 79975899999999999985138998998278753299999999999986077998899988038999999999977996
Q ss_pred CEEEECCCCCCHHHHHHH----------HHHHCCCEEEECHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCC
Q ss_conf 389971644102457889----------9650787898418999720111238876567689887770289982785458
Q 001731 379 KIREYFGTCVKTRQYELQ----------YVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIK 448 (1019)
Q Consensus 379 ~v~~~~g~~~~~~~~~~~----------~~~~~~dViItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIiDEAH~iK 448 (1019)
.+..++|........... .....++|+|+||+++.++...+. ...|++||+||||++|
T Consensus 313 ~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l~------------~~~w~~vIvDEaH~lk 380 (800)
T 3mwy_W 313 NCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELG------------SIKWQFMAVDEAHRLK 380 (800)
T ss_dssp CEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHHH------------TSEEEEEEETTGGGGC
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECHHHHHHHHHHHH------------CCCCCEEEHHHHHHHC
T ss_conf 4999827777788988877622630013445667889906999986499983------------3773256413444414
Q ss_pred CCCHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 96137868743078661799634899899899999997526998899378998820000037873100588884289999
Q 001731 449 NPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAK 528 (1019)
Q Consensus 449 N~~s~~~kal~~l~a~~RilLTGTPiqN~l~EL~sLl~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~~~~~~~~~~~ 528 (1019)
|..++.++++..+++.+||+|||||++|++.|||++++|+.|+.++....|...... ........
T Consensus 381 n~~s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~---------------~~~~~~~~ 445 (800)
T 3mwy_W 381 NAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQD---------------EEQEEYIH 445 (800)
T ss_dssp CSSSHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCT---------------THHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHCCCCCC---------------HHHHHHHH
T ss_conf 710199999997522438972278577999999999998586636743442322231---------------46899999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHH-----HHCCCCHHHHHHHHH
Q ss_conf 999986799998631000356754322336866238999728999999999999569876-----104899479999999
Q 001731 529 ELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVL-----SAFDGSPLAALTILK 603 (1019)
Q Consensus 529 ~L~~~l~p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~Ls~~Qr~lY~~~l~~~~~~-----~~~~~~~l~~l~~Lr 603 (1019)
.|+..+.|+++||++.++.. .||++.+.+++|+|++.|+.+|..++...... .....+.+..++.||
T Consensus 446 ~L~~~l~p~~lRR~k~dv~~--------~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lr 517 (800)
T 3mwy_W 446 DLHRRIQPFILRRLKKDVEK--------SLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELK 517 (800)
T ss_dssp HHHHTTGGGEEECCGGGGTT--------TSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--------CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 99999757775320876643--------1688279999707999999999999999999986103545446999999999
Q ss_pred HHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 98129134435556556410247899467999999998996532112466310102316999999998664499913474
Q 001731 604 KICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIF 683 (1019)
Q Consensus 604 kic~hP~Ll~~~~~~~~~~~~~~~~~~e~~~~~e~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIF 683 (1019)
++|+||.++.................. ..........|+|+..|.++|..+...|+|+|||
T Consensus 518 k~~~hp~l~~~~~~~~~~~~~~~~~~~-------------------~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIF 578 (800)
T 3mwy_W 518 KASNHPYLFDNAEERVLQKFGDGKMTR-------------------ENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIF 578 (800)
T ss_dssp HHHHCGGGSSSHHHHHCCCC----CCS-------------------HHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEE
T ss_pred HHHCCHHHHCCHHHHHHHHCCCCCCCH-------------------HHHHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 873586542355789988615665557-------------------7888876642769999999999975279818999
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCC-CCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCHH
Q ss_conf 15199999999998524981999978889788999999640699-95589992277643448556798999099999014
Q 001731 684 SQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGD-VAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPST 762 (1019)
Q Consensus 684 sq~~~~ld~L~~~L~~~gi~~~ridG~~s~~eR~~iI~~F~~~~-~~~VlLlST~agg~GLNLt~A~~VIi~D~~WNp~~ 762 (1019)
|+++.++++|...|...|+++.+++|+++..+|+++++.|+++. ..++||+||++||+||||+.|++||+||++|||+.
T Consensus 579 sq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~ 658 (800)
T 3mwy_W 579 SQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQA 658 (800)
T ss_dssp ESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHH
T ss_pred ECHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHH
T ss_conf 63599999999999867997899969999999999999960899982599974544567877601636899468788116
Q ss_pred HHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCC-------CCCCCHHHHHHHHCCCCCC
Q ss_conf 6555444434199784899999608999999999999997689898204100-------0247998899987499999
Q 001731 763 DNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQ-------IRYFSQQDLRELLSLPKQG 833 (1019)
Q Consensus 763 ~~QaiGRa~RiGQ~k~V~VyrLit~gTIEEkI~~rq~~K~~l~~~~~~~~~~-------~r~fs~~dL~eLf~l~~~~ 833 (1019)
+.||+||+||+||+++|.||+|++.+|+||+|++++..|..+...+++.... ....+.++|.+|+.++...
T Consensus 659 ~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l~~~vi~~~~~~~~~~~~~~~~~~~el~~ll~~g~~~ 736 (800)
T 3mwy_W 659 DLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIISLGVTDGNKYTKKNEPNAGELSAILKFGAGN 736 (800)
T ss_dssp HHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTTSCC----------------CCCCHHHHHHHHSSCSSS
T ss_pred HHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHH
T ss_conf 899999988558986379999861998999999999998889999970375665321123478999999999716576
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=1.00 E-value=1 Score=616.20 Aligned_cols=462 Identities=33% Similarity=0.554 Sum_probs=403.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCC
Q ss_conf 92013898468999999999842278860998399843899999999998463999908999376108999999999357
Q 001731 297 PGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVGL 376 (1019)
Q Consensus 297 p~~i~~~L~phQ~egV~wL~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIVvP~sLl~qW~~El~k~~~ 376 (1019)
|..+...|+|||.+|+.|++..+..+.|+||+|+||+|||+++++++..+...+..+++|||||.+++.||..||.+|++
T Consensus 31 p~~~~~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qw~~e~~~~~~ 110 (500)
T 1z63_A 31 PYNIKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLSVLKNWEEELSKFAP 110 (500)
T ss_dssp CCSCSSCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECSTTHHHHHHHHHHHCT
T ss_pred CHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHCC
T ss_conf 83320033699999999999974179988998089973899999999988755899978999038999999999999779
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCEEEECHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHH
Q ss_conf 97389971644102457889965078789841899972011123887656768988777028998278545896137868
Q 001731 377 SAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAK 456 (1019)
Q Consensus 377 ~~~v~~~~g~~~~~~~~~~~~~~~~~dViItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIiDEAH~iKN~~s~~~k 456 (1019)
...+..+.+..... ....++|+|+||+++..... + ....|++||+||||+++|..++.++
T Consensus 111 ~~~v~~~~g~~~~~-------~~~~~~ivi~t~~~l~~~~~-l------------~~~~~~~vIvDEaH~~kn~~~~~~~ 170 (500)
T 1z63_A 111 HLRFAVFHEDRSKI-------KLEDYDIILTTYAVLLRDTR-L------------KEVEWKYIVIDEAQNIKNPQTKIFK 170 (500)
T ss_dssp TSCEEECSSSTTSC-------CGGGSSEEEEEHHHHTTCHH-H------------HTCCEEEEEEETGGGGSCTTSHHHH
T ss_pred CCEEEEEECCCHHC-------CCCCCCEEEEEHHHHHCCCH-H------------CCCCCCEEEEECCCCCCCHHHHHHH
T ss_conf 95599972670210-------03577689963799726302-1------------1787287998084101787689999
Q ss_pred HHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 74307866179963489989989999999752699889937899882000003787310058888428999999998679
Q 001731 457 SLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQP 536 (1019)
Q Consensus 457 al~~l~a~~RilLTGTPiqN~l~EL~sLl~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~~~~~~~~~~~~L~~~l~p 536 (1019)
++..+++.++|+|||||++|++.|+|++++|+.|+.+++...|...|..|+..+.. .....|+..+.|
T Consensus 171 ~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~------------~~~~~l~~~l~~ 238 (500)
T 1z63_A 171 AVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDN------------MAKEELKAIISP 238 (500)
T ss_dssp HHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCH------------HHHHHHHHHHTT
T ss_pred HHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCH------------HHHHHHHHHHHH
T ss_conf 99960047189974677779999999999985877579989999985251114668------------899999999766
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHCCHH
Q ss_conf 999863100035675432233686623899972899999999999956987610------48994799999999812913
Q 001731 537 YFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSA------FDGSPLAALTILKKICDHPL 610 (1019)
Q Consensus 537 ~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~Ls~~Qr~lY~~~l~~~~~~~~------~~~~~l~~l~~Lrkic~hP~ 610 (1019)
+++||++.+... ...+|++.+.++++.+++.|+.+|..+......... ..+..+..+..++++|+||.
T Consensus 239 ~~lrr~k~~~~~------~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~ 312 (500)
T 1z63_A 239 FILRRTKYDKAI------INDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPA 312 (500)
T ss_dssp TEECCCTTCHHH------HTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTH
T ss_pred HEEEECCCCCCH------HHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHH
T ss_conf 745502554241------12299975899981899999999999999999999864232106799999999998817998
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHH
Q ss_conf 44355565564102478994679999999989965321124663101023169999999986644999134741519999
Q 001731 611 LLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKML 690 (1019)
Q Consensus 611 Ll~~~~~~~~~~~~~~~~~~e~~~~~e~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~l 690 (1019)
++.... .....++|+..+.+++..+...++|+||||+++.++
T Consensus 313 l~~~~~--------------------------------------~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~ 354 (500)
T 1z63_A 313 LLKGGE--------------------------------------QSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMG 354 (500)
T ss_dssp HHHCSC--------------------------------------CCSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHH
T ss_pred HHCCCC--------------------------------------CHHHCCHHHHHHHHHHHHHHCCCCCEEEEEEHHHHH
T ss_conf 843852--------------------------------------011115529999999999872688689997218899
Q ss_pred HHHHHHHHHC-CCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHH
Q ss_conf 9999998524-981999978889788999999640699955899922776434485567989990999990146555444
Q 001731 691 NLIQESIGSK-GYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDR 769 (1019)
Q Consensus 691 d~L~~~L~~~-gi~~~ridG~~s~~eR~~iI~~F~~~~~~~VlLlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QaiGR 769 (1019)
+.+...|... |+.+.+++|+++..+|+++++.|++++...++|++|+++++|+||+.|++||+||+||||..+.||+||
T Consensus 355 ~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR 434 (500)
T 1z63_A 355 KIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDR 434 (500)
T ss_dssp HHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHT
T ss_pred HHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCCCCCHHHHHHHH
T ss_conf 99999998853887699979999999999999960899987799953335577744558889995899895458999998
Q ss_pred HHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCHHHHHHHHCCCCCCC
Q ss_conf 43419978489999960899999999999999768989820410-002479988999874999998
Q 001731 770 AYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKE-QIRYFSQQDLRELLSLPKQGF 834 (1019)
Q Consensus 770 a~RiGQ~k~V~VyrLit~gTIEEkI~~rq~~K~~l~~~~~~~~~-~~r~fs~~dL~eLf~l~~~~~ 834 (1019)
++|+||+++|.||+|++.+|+||+|+.++..|..++..+++..+ ....++.+||++||++...|+
T Consensus 435 ~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~K~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 500 (500)
T 1z63_A 435 VYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSGDSWITELSTEELRKVIELSVGGY 500 (500)
T ss_dssp TTTTTTTSCEEEEEEEETTSHHHHTHHHHTTCSSSSSSGGGSTTGGGGSSCHHHHHHHHSCCC---
T ss_pred HHHCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCHHHHHHHHCCCCCCC
T ss_conf 887389870699997748989999999999999999998606850211599999999964688999
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=1.00 E-value=1 Score=486.54 Aligned_cols=446 Identities=17% Similarity=0.211 Sum_probs=323.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCC
Q ss_conf 13898468999999999842278860998399843899999999998463999908999376108999999999357973
Q 001731 300 IGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVGLSAK 379 (1019)
Q Consensus 300 i~~~L~phQ~egV~wL~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIVvP~sLl~qW~~El~k~~~~~~ 379 (1019)
....|+|||.+++.|++... +.++||+|+||+|||+++++++..+...+..+++|||||++|+.||..||.+++ +..
T Consensus 150 ~~~~LrpyQ~eav~~~l~~~--~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~sLl~Qw~~E~~~~f-~l~ 226 (968)
T 3dmq_A 150 QRTSLIPHQLNIAHDVGRRH--APRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRF-NLR 226 (968)
T ss_dssp CSSCCCHHHHHHHHHHHHSS--SCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCTTTHHHHHHHHHHHS-CCC
T ss_pred CCCCCCHHHHHHHHHHHHHC--CCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHH-CCC
T ss_conf 89997099999999999705--898898789997599999999999998189982999957888999999999986-998
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEECHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHH---HH
Q ss_conf 899716441024578899650787898418999720111238876567689887770289982785458961378---68
Q 001731 380 IREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQR---AK 456 (1019)
Q Consensus 380 v~~~~g~~~~~~~~~~~~~~~~~dViItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIiDEAH~iKN~~s~~---~k 456 (1019)
+..+.+.............+..++|+|+||+++.++...... +....|++||+||||+++|..+.. ++
T Consensus 227 v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~---------l~~~~~dlVIvDEAH~~kn~~~~~s~~~~ 297 (968)
T 3dmq_A 227 FALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEH---------LCEAEWDLLVVDEAHHLVWSEDAPSREYQ 297 (968)
T ss_dssp CEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHH---------HHTSCCCEEEECCSSCCCCBTTBCCHHHH
T ss_pred EEEECCCHHHHHHHHCCCCCCCCCEEEECHHHHHHCHHHHHH---------HHHCCCCEEEEHHHHHHCCCCCCCHHHHH
T ss_conf 799806205554320036445689899768998648788887---------64158778974446762588875429999
Q ss_pred HHHCC--CCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCC---------CCCC---------CCHH
Q ss_conf 74307--86617996348998998999999975269988993789988200000---------3787---------3100
Q 001731 457 SLLEI--PSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPIL---------RGND---------KHAL 516 (1019)
Q Consensus 457 al~~l--~a~~RilLTGTPiqN~l~EL~sLl~fl~p~~lg~~~~F~~~f~~pi~---------~~~~---------~~a~ 516 (1019)
++..+ .+.++|+|||||++|++.|+|++++|+.|+.+++...|...+..... .+.. ....
T Consensus 298 ~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l 377 (968)
T 3dmq_A 298 AIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMI 377 (968)
T ss_dssp HHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTT
T ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 99998625785899976876698799999998259301189899999998578899999987426789988999999884
Q ss_pred H-------------HHHHHHHHHHHHHHHHHH-----HHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHH
Q ss_conf 5-------------888842899999999867-----9999863100035675432233686623899972899999999
Q 001731 517 D-------------REKRIGSAVAKELRERIQ-----PYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLY 578 (1019)
Q Consensus 517 ~-------------~~~~~~~~~~~~L~~~l~-----p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~Ls~~Qr~lY 578 (1019)
. ............+..++. .+++|+++.. ...+|.+....+.+.+++..+..|
T Consensus 378 ~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~---------i~~~p~r~~~~~~l~~~~~~~~~~ 448 (968)
T 3dmq_A 378 GEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNG---------VKGFPKRELHTIKLPLPTQYQTAI 448 (968)
T ss_dssp CTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTT---------CCCCCCCCCCEEEECCCHHHHHHH
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH---------HCCCCHHHEEEEECCCCHHHHHHH
T ss_conf 20336788750362223337999999999998617332656322655---------455671115752368999999999
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99995698761048994799999999812913443555655641024789946799999999899653211246631010
Q 001731 579 EAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDN 658 (1019)
Q Consensus 579 ~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~Ll~~~~~~~~~~~~~~~~~~e~~~~~e~l~~~~~~~~~~~~~~~~~~~ 658 (1019)
...... ....+... ....+.+|..+..... ........
T Consensus 449 ~~~~~~-------~~~~~~~~--~~~~~l~pe~~~~~l~---------------------------------~~~~~~~~ 486 (968)
T 3dmq_A 449 KVSGIM-------GARKSAED--RARDMLYPERIYQEFE---------------------------------GDNATWWN 486 (968)
T ss_dssp HHHHHT-------TCCSSGGG--GTHHHHCSGGGTTTTT---------------------------------SSSCCTTT
T ss_pred HHHHHH-------HHHHHHHH--HHHHHCCHHHHHHHHH---------------------------------HHHHCCCC
T ss_conf 987543-------02126677--7764108598998764---------------------------------33313568
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 23169999999986644999134741519999999999852-49819999788897889999996406999558999227
Q 001731 659 ISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGS-KGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQ 737 (1019)
Q Consensus 659 ~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ld~L~~~L~~-~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~VlLlST~ 737 (1019)
.+.|+..|.+++.. ..+.|+||||+++.+++.+...|.. .|+++..+||+++..+|.++++.|+++.....+|++|+
T Consensus 487 ~~~K~~~L~~ll~~--~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~ 564 (968)
T 3dmq_A 487 FDPRVEWLMGYLTS--HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSE 564 (968)
T ss_dssp TSHHHHHHHHHHHH--TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSC
T ss_pred CCHHHHHHHHHHHH--CCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEECC
T ss_conf 56799999999983--7999789996959999999999998749838998499999999999999747997630898533
Q ss_pred CCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 7643448556798999099999014655544443419978489999960899999999999999768989820
Q 001731 738 VGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATE 810 (1019)
Q Consensus 738 agg~GLNLt~A~~VIi~D~~WNp~~~~QaiGRa~RiGQ~k~V~VyrLit~gTIEEkI~~rq~~K~~l~~~~~~ 810 (1019)
++++|+|++.|++||+||+||||..+.|++||++|+||++.|++|++++.+|+|++|++.+..|..++...+.
T Consensus 565 v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~~~~~~~ 637 (968)
T 3dmq_A 565 IGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCP 637 (968)
T ss_dssp CTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCCSSSCCS
T ss_pred HHHCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCEECCCC
T ss_conf 4316888556767999569998789998701143079985089998057771999999999867876353799
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=393.27 Aligned_cols=439 Identities=15% Similarity=0.114 Sum_probs=289.7
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECC-CCHHHHHHHHHHHC--CCC
Q ss_conf 898468999999999842278860998399843899999999998463999908999376-10899999999935--797
Q 001731 302 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK-TLLSHWIKELTAVG--LSA 378 (1019)
Q Consensus 302 ~~L~phQ~egV~wL~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIVvP~-sLl~qW~~El~k~~--~~~ 378 (1019)
..|+|||.+++.|++. + ++||+++||+|||++++.++..+.. ...+++|||||+ +|+.||..++.+|+ +..
T Consensus 8 ~~l~~~Q~~~i~~~~~----~-~~ll~~~tG~GKT~~~~~~~~~~~~-~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~ 81 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKE----T-NCLIVLPTGLGKTLIAMMIAEYRLT-KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPE 81 (494)
T ss_dssp HCCCHHHHHHHHHGGG----S-CEEEECCTTSCHHHHHHHHHHHHHH-HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGG
T ss_pred CCCCHHHHHHHHHHHH----C-CEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHHHCCCHH
T ss_conf 7863999999999961----9-9899918998789999999999986-47985999978889999999999987475611
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEECHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHH--HH
Q ss_conf 3899716441024578899650787898418999720111238876567689887770289982785458961378--68
Q 001731 379 KIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQR--AK 456 (1019)
Q Consensus 379 ~v~~~~g~~~~~~~~~~~~~~~~~dViItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIiDEAH~iKN~~s~~--~k 456 (1019)
.+..+.|....... ...+..++|+|+||+.+........ +....|++||+||||++++..... ..
T Consensus 82 ~v~~~~g~~~~~~~---~~~~~~~~ivv~T~~~l~~~~~~~~----------~~~~~~~~vIiDEaH~~~~~~~~~~~~~ 148 (494)
T 1wp9_A 82 KIVALTGEKSPEER---SKAWARAKVIVATPQTIENDLLAGR----------ISLEDVSLIVFDEAHRAVGNYAYVFIAR 148 (494)
T ss_dssp GEEEECSCSCHHHH---HHHHHHCSEEEECHHHHHHHHHTTS----------CCTTSCSEEEEETGGGCSTTCHHHHHHH
T ss_pred HEEEEECCCCHHHH---HHHCCCCCEEEECHHHHHHHHHCCC----------CCHHHCEEEEEECCCCCCCCCCHHHHHH
T ss_conf 16876077533556---6533579899963999999986087----------1565410899978756688881999999
Q ss_pred HHH-CCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCH---HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 743-0786617996348998998999999975269988993---789988200000378731005888842899999999
Q 001731 457 SLL-EIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDN---KWFKEKYELPILRGNDKHALDREKRIGSAVAKELRE 532 (1019)
Q Consensus 457 al~-~l~a~~RilLTGTPiqN~l~EL~sLl~fl~p~~lg~~---~~F~~~f~~pi~~~~~~~a~~~~~~~~~~~~~~L~~ 532 (1019)
.+. ..+..++|+|||||. |+..+++.++.++.+...... ..+...|..+......... .......+..
T Consensus 149 ~~~~~~~~~~~l~lTaTp~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 220 (494)
T 1wp9_A 149 EYKRQAKNPLVIGLTASPG-STPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVD-------LPEIYKEVRK 220 (494)
T ss_dssp HHHHHCSSCCEEEEESCSC-SSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEEC-------CCHHHHHHHH
T ss_pred HHHHCCCCCEEEEEECCCC-CCCHHHHHHHHHCCHHEEECCCCCCHHHHHHCCCCCEEEEECC-------CCHHHHHHHH
T ss_conf 9973288776999956998-8857899999850700050267875878875278742689568-------8588999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCHHH---------------
Q ss_conf 86799998631000356754322336866238999728999999999999569876104899479---------------
Q 001731 533 RIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLA--------------- 597 (1019)
Q Consensus 533 ~l~p~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~Ls~~Qr~lY~~~l~~~~~~~~~~~~~l~--------------- 597 (1019)
.+.+++.++.+....... +++.. ..++..........+.... .......+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~-------~~~~~-----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 286 (494)
T 1wp9_A 221 LLREMLRDALKPLAETGL-------LESSS-----PDIPKKEVLRAGQIINEEM--AKGNHDLRGLLLYHAMALKLHHAI 286 (494)
T ss_dssp HHHHHHHHHHHHHHHHTS-------SSCCC-----TTSCHHHHHHHHHHHHHHH--TTTCCSTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCC-------CCCCC-----CCCCHHHHHHHHHHHHHHH--HCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 898999999999997355-------65457-----7733557899999999875--335631134799998888899999
Q ss_pred -------------HHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf -------------9999999812913443555655641024789946799999999899653211246631010231699
Q 001731 598 -------------ALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKIS 664 (1019)
Q Consensus 598 -------------~l~~Lrkic~hP~Ll~~~~~~~~~~~~~~~~~~e~~~~~e~l~~~~~~~~~~~~~~~~~~~~S~Kl~ 664 (1019)
.+..+...+.++...... .+ ...+. .......... .......++|+.
T Consensus 287 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-------~~--~~~~~----~~~~~~~~~~-------~~~~~~~~~k~~ 346 (494)
T 1wp9_A 287 ELLETQGLSALRAYIKKLYEEAKAGSTKASK-------EI--FSDKR----MKKAISLLVQ-------AKEIGLDHPKMD 346 (494)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHTTCCHHHH-------HH--HTSHH----HHHHHHHHHH-------HHHHTCSCHHHH
T ss_pred HHHHHHCHHHHHHHHHHHHHHHCCCCCHHHH-------HH--HHHHH----HHHHHHHHHH-------HHHCCCCCHHHH
T ss_conf 9998525799999999998752232114556-------66--65078----8989999998-------874589986999
Q ss_pred HHHHHHHHHC--CCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEEEC--------CCCHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 9999998664--49991347415199999999998524981999978--------8897889999996406999558999
Q 001731 665 FILSLLDKLI--PEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDG--------TTKASDRVKIVNDFQEGDVAPIFLL 734 (1019)
Q Consensus 665 ~L~~LL~~~~--~~g~KvLIFsq~~~~ld~L~~~L~~~gi~~~ridG--------~~s~~eR~~iI~~F~~~~~~~VlLl 734 (1019)
.|.++|..+. ..+.|+||||+++.+++.+...|...|+++.+++| +++..+|+++++.|+++... +|+
T Consensus 347 ~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~--vLv 424 (494)
T 1wp9_A 347 KLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFN--VLV 424 (494)
T ss_dssp HHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCS--EEE
T ss_pred HHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCE--EEE
T ss_conf 999999998436899759999766899999999999759980799656654444458999999999998669946--999
Q ss_pred ECCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 227764344855679899909999901465554444341997848999996089999999999999976898
Q 001731 735 TSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFK 806 (1019)
Q Consensus 735 ST~agg~GLNLt~A~~VIi~D~~WNp~~~~QaiGRa~RiGQ~k~V~VyrLit~gTIEEkI~~rq~~K~~l~~ 806 (1019)
+|+++++|+|++.+++||+||+||||..+.|++||++|.|| +.+|+|++.+|+||+++.++..|..+++
T Consensus 425 ~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~---g~~~~l~~~~t~ee~~~~~~~~k~~~~~ 493 (494)
T 1wp9_A 425 ATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP---GRVIILMAKGTRDEAYYWSSRQKEKIMQ 493 (494)
T ss_dssp ECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC---SEEEEEEETTSHHHHHHHHCC-------
T ss_pred ECCCCCCCCCCHHCCEEEEECCCCCHHHHHHHHHHCCCCCC---CEEEEEEECCCHHHHHHHHHHHHHHHHC
T ss_conf 88841258871437989992898878999998752257788---4699999569878999998887898730
No 6
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=359.41 Aligned_cols=453 Identities=14% Similarity=0.129 Sum_probs=272.7
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCC---CCEEEEEECC-CCHHHHHHHHHHHCC
Q ss_conf 389846899999999984227886099839984389999999999846399---9908999376-108999999999357
Q 001731 301 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRL---IKRALVVAPK-TLLSHWIKELTAVGL 376 (1019)
Q Consensus 301 ~~~L~phQ~egV~wL~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~---~k~vLIVvP~-sLl~qW~~El~k~~~ 376 (1019)
...|+|||.+++.++.. +.++|++++||+|||++++..+........ .+++|||||+ .|+.||..+|.++++
T Consensus 246 ~~~~r~~Q~~ai~~il~----g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 321 (936)
T 4a2w_A 246 TKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (936)
T ss_dssp --CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHC----CCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHC
T ss_conf 89877999999999980----99899996998459999999999999736556898599996989999999999999712
Q ss_pred --CCCEEEECCCCCCHHHHHHHHHHHCCCEEEECHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHH
Q ss_conf --973899716441024578899650787898418999720111238876567689887770289982785458961378
Q 001731 377 --SAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQR 454 (1019)
Q Consensus 377 --~~~v~~~~g~~~~~~~~~~~~~~~~~dViItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIiDEAH~iKN~~s~~ 454 (1019)
+..+..++|....... ........+|+|+||+++......... .....|++||+||||++.+..+..
T Consensus 322 ~~~~~v~~~~G~~~~~~~--~~~~~~~~~IvI~Tp~~L~~~l~~~~~---------~~l~~~~liViDEaH~~~~~~~~~ 390 (936)
T 4a2w_A 322 RQGYSVQGISGENFSNVS--VEKVIEDSDIIVVTPQILVNSFEDGTL---------TSLSIFTLMIFDECHNTTGNHPYN 390 (936)
T ss_dssp TTTCCEEEECCC-----C--CHHHHHHCSEEEECHHHHHHHHHSSSC---------CCGGGCSEEEEETGGGCSTTCHHH
T ss_pred CCCCEEEEEECCCCHHHH--HHHHCCCCCEEEECHHHHHHHHHCCCC---------CCCCCCCEEEEECCCCCCCCCCHH
T ss_conf 169559999799631257--897416999999449999999871764---------533678799998731359986699
Q ss_pred HHHHHC---------CCCCCEEEEECCCCCCCHHHHHHHH-------HHHCCC----CCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf 687430---------7866179963489989989999999-------752699----88993789988200000378731
Q 001731 455 AKSLLE---------IPSAHRIIISGTPIQNNLKELWALF-------NFCCPE----LLGDNKWFKEKYELPILRGNDKH 514 (1019)
Q Consensus 455 ~kal~~---------l~a~~RilLTGTPiqN~l~EL~sLl-------~fl~p~----~lg~~~~F~~~f~~pi~~~~~~~ 514 (1019)
..+.. .+..++++|||||.+++..+++..+ ..+... .......+...+..|........
T Consensus 391 -~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~ 469 (936)
T 4a2w_A 391 -VLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVK 469 (936)
T ss_dssp -HHHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECC
T ss_pred -HHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHCCCCCCEEEECC
T ss_conf -9999999986313788673998638855454020899999999999854971553465448999875367762377336
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHCCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf --0058888428999999998679999----------------------8631000356754322336866238999728
Q 001731 515 --ALDREKRIGSAVAKELRERIQPYFL----------------------RRLKNEVFHEDDVTSSATLSKKNEMIVWLRL 570 (1019)
Q Consensus 515 --a~~~~~~~~~~~~~~L~~~l~p~~l----------------------RR~k~dv~~~~~~~~~~~LP~k~e~vv~~~L 570 (1019)
...............++..+..++. ...+.... ..+|.
T Consensus 470 ~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~--------~~l~~---------- 531 (936)
T 4a2w_A 470 RRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRL--------LQLED---------- 531 (936)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHH--------CCCSC----------
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH--------HCCCC----------
T ss_conf 556757999999999999999998876655532022332257799999999998877--------40553----------
Q ss_pred CHHHHHHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 9999999999995698761--------04899479999999981291344355565564102478994679999999989
Q 001731 571 TSCQRQLYEAFLNSEIVLS--------AFDGSPLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMH 642 (1019)
Q Consensus 571 s~~Qr~lY~~~l~~~~~~~--------~~~~~~l~~l~~Lrkic~hP~Ll~~~~~~~~~~~~~~~~~~e~~~~~e~l~~~ 642 (1019)
......++..+........ .........+..++..+.... .....+.+......+...
T Consensus 532 ~~~~~~~~~~l~~~~~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~--------------~~~~~~~e~~l~~~~~~~ 597 (936)
T 4a2w_A 532 KEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVK--------------NGPYTELEQHLTAKFQEK 597 (936)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH--------------HTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH--------------HCCCCHHHHHHHHHHHHH
T ss_conf 210357999999999999998888750020428889999999999876--------------325887899999989999
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC--CCCCCEEEECCCHHHHHHHHHHHHHC------------CCEEEEEE
Q ss_conf 96532112466310102316999999998664--49991347415199999999998524------------98199997
Q 001731 643 IADVAEKDDFQEQHDNISCKISFILSLLDKLI--PEGHNVLIFSQTRKMLNLIQESIGSK------------GYKFLRID 708 (1019)
Q Consensus 643 ~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~--~~g~KvLIFsq~~~~ld~L~~~L~~~------------gi~~~rid 708 (1019)
.... ..........++|+..|.++|.+.. ..++|+||||+++.+++.|...|... |..+..+|
T Consensus 598 ~~~l---~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~h 674 (936)
T 4a2w_A 598 EPEL---IALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQT 674 (936)
T ss_dssp HHHH---HHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC---------
T ss_pred HHHH---HHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCC
T ss_conf 9999---9764056778979999999999985358997499996979999999999863735366661699657876567
Q ss_pred CCCCHHHHHHHHHHHHC-CCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEC
Q ss_conf 88897889999996406-99955899922776434485567989990999990146555444434199784899999608
Q 001731 709 GTTKASDRVKIVNDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTC 787 (1019)
Q Consensus 709 G~~s~~eR~~iI~~F~~-~~~~~VlLlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QaiGRa~RiGQ~k~V~VyrLit~ 787 (1019)
|+++..+|.++++.|+. +... +|++|+++++|||++.++.||+||+||||..++|++|| ||.+++.+|+|++.
T Consensus 675 g~m~~~eR~~il~~Fr~~g~~~--VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR----GR~~~g~vi~Li~~ 748 (936)
T 4a2w_A 675 TGMTLPSQKGVLDAFKTSKDNR--LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSK 748 (936)
T ss_dssp -------------------CCS--EEEEECC------CCCCSEEEEESCCSCSHHHHCC-----------CCCEEEEESC
T ss_pred CCCCHHHHHHHHHHHHCCCCEE--EEEEECCHHCCCCCHHCCEEEEECCCCCHHHHHHHCCC----CCCCCCEEEEEEEC
T ss_conf 8889999999999863159815--99980726427760558989993899988999996487----78888779999869
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999999999997689898204
Q 001731 788 GTVEEKIYRKQIFKGGLFKTATEH 811 (1019)
Q Consensus 788 gTIEEkI~~rq~~K~~l~~~~~~~ 811 (1019)
+|++++.+ .+..|..++..++..
T Consensus 749 ~t~ee~~~-~~~~ke~~~~~~i~~ 771 (936)
T 4a2w_A 749 TEVVENEK-CNRYKEEMMNKAVEK 771 (936)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred CCHHHHHH-HHHHHHHHHHHHHHH
T ss_conf 88999999-988999999999998
No 7
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=357.57 Aligned_cols=465 Identities=14% Similarity=0.125 Sum_probs=276.5
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCC---CCEEEEEECC-CCHHHHHHHHHHHCC
Q ss_conf 389846899999999984227886099839984389999999999846399---9908999376-108999999999357
Q 001731 301 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRL---IKRALVVAPK-TLLSHWIKELTAVGL 376 (1019)
Q Consensus 301 ~~~L~phQ~egV~wL~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~---~k~vLIVvP~-sLl~qW~~El~k~~~ 376 (1019)
...|+|||.+++.++.. +.++|++++||+|||++++..+........ .+++|||||+ .|+.||..+|.++++
T Consensus 246 ~~~l~~~Q~~~i~~~l~----~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~ 321 (797)
T 4a2q_A 246 TKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (797)
T ss_dssp --CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCHHHHHHHHHHHH----CCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHCC
T ss_conf 89999999999999980----99989996999729999999999999846656799699996989999999999998614
Q ss_pred --CCCEEEECCCCCCHHHHHHHHHHHCCCEEEECHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHH
Q ss_conf --973899716441024578899650787898418999720111238876567689887770289982785458961378
Q 001731 377 --SAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQR 454 (1019)
Q Consensus 377 --~~~v~~~~g~~~~~~~~~~~~~~~~~dViItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIiDEAH~iKN~~s~~ 454 (1019)
+..+..++|....... ........+|+|+||+.+......... .....|++||+||||++.+.....
T Consensus 322 ~~~~~v~~~~g~~~~~~~--~~~~~~~~~Ivv~Tp~~l~~~l~~~~~---------~~~~~~~~iViDEaH~~~~~~~~~ 390 (797)
T 4a2q_A 322 RQGYSVQGISGENFSNVS--VEKVIEDSDIIVVTPQILVNSFEDGTL---------TSLSIFTLMIFDECHNTTGNHPYN 390 (797)
T ss_dssp GGTCCEEEECCC-----C--HHHHHHTCSEEEECHHHHHHHHHSSSC---------CCGGGCSEEEETTGGGCSTTSHHH
T ss_pred CCCCEEEEEECCCCHHHH--HHHHHCCCCEEEECHHHHHHHHHHCCC---------CCCCCCCEEEEECCCCCCCCCCHH
T ss_conf 379469999699623246--997407999999766999999982654---------651337789998863558876499
Q ss_pred HHHHHC--------CCCCCEEEEECCCCCCCHH----------HHHHHHHHHCC-CCCCCHHHHHHHHHCCCCCCCCCC-
Q ss_conf 687430--------7866179963489989989----------99999975269-988993789988200000378731-
Q 001731 455 AKSLLE--------IPSAHRIIISGTPIQNNLK----------ELWALFNFCCP-ELLGDNKWFKEKYELPILRGNDKH- 514 (1019)
Q Consensus 455 ~kal~~--------l~a~~RilLTGTPiqN~l~----------EL~sLl~fl~p-~~lg~~~~F~~~f~~pi~~~~~~~- 514 (1019)
...... .+..++++|||||.+++.. +++..++.-.. ........+...+..|........
T Consensus 391 ~i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~ 470 (797)
T 4a2q_A 391 VLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKR 470 (797)
T ss_dssp HHHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCC
T ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHCCCCCEEEEECCC
T ss_conf 99999999763147887859997277554552248999999999998549848854543178899735888548884577
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-E----------EEEEECCCHHHHHHHHHHH
Q ss_conf -005888842899999999867999986310003567543223368662-3----------8999728999999999999
Q 001731 515 -ALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKN-E----------MIVWLRLTSCQRQLYEAFL 582 (1019)
Q Consensus 515 -a~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~~~~~~~~~LP~k~-e----------~vv~~~Ls~~Qr~lY~~~l 582 (1019)
...............++..+..++-........ ...+.... + .............+|..+.
T Consensus 471 ~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~-------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 543 (797)
T 4a2q_A 471 RIHNPFAAIISNLMSETEALMRTIYSVDTLSQNS-------KKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALF 543 (797)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHHC-------------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 7786789999999999999999987567765300-------001140567789999999877740343202567999999
Q ss_pred HHHHHH--------HHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 569876--------104899479999999981291344355565564102478994679999999989965321124663
Q 001731 583 NSEIVL--------SAFDGSPLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQE 654 (1019)
Q Consensus 583 ~~~~~~--------~~~~~~~l~~l~~Lrkic~hP~Ll~~~~~~~~~~~~~~~~~~e~~~~~e~l~~~~~~~~~~~~~~~ 654 (1019)
...... ..........+..++..|.+.. ..............+...... ......
T Consensus 544 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------------~~~~~~~~~~l~~~~~~~~~~---l~~~~~ 606 (797)
T 4a2q_A 544 ICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVK--------------NGPYTELEQHLTAKFQEKEPE---LIALSK 606 (797)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH--------------HTTCCHHHHHHHHHHHTTHHH---HHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH--------------CCCCCHHHHHHHHHHHHHHHH---HHHHHC
T ss_conf 999999999988765413258889999999999875--------------047668999999999999999---987630
Q ss_pred HCCCHHHHHHHHHHHHHHHC--CCCCCEEEECCCHHHHHHHHHHHHHC------------CCEEEEEECCCCHHHHHHHH
Q ss_conf 10102316999999998664--49991347415199999999998524------------98199997888978899999
Q 001731 655 QHDNISCKISFILSLLDKLI--PEGHNVLIFSQTRKMLNLIQESIGSK------------GYKFLRIDGTTKASDRVKIV 720 (1019)
Q Consensus 655 ~~~~~S~Kl~~L~~LL~~~~--~~g~KvLIFsq~~~~ld~L~~~L~~~------------gi~~~ridG~~s~~eR~~iI 720 (1019)
.....++|+..|..+|.... ..++|+||||+++.+++.|...|... |..+..+||+++..+|..++
T Consensus 607 ~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l 686 (797)
T 4a2q_A 607 DETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVL 686 (797)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC---------------------
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHH
T ss_conf 78889959999999999985058997089997958999999999974756466552189844775457898999999999
Q ss_pred HHHHC-CCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHH
Q ss_conf 96406-99955899922776434485567989990999990146555444434199784899999608999999999999
Q 001731 721 NDFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQI 799 (1019)
Q Consensus 721 ~~F~~-~~~~~VlLlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QaiGRa~RiGQ~k~V~VyrLit~gTIEEkI~~rq~ 799 (1019)
+.|++ +... +|++|+++++|||++.|+.||+||+||||..+.|++|| +| .+++.+|+|++.++++++ +..+.
T Consensus 687 ~~F~~~g~~~--vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR---~~~g~~i~l~~~~~~ee~-~~~~~ 759 (797)
T 4a2q_A 687 DAFKTSKDNR--LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GR---AAGSKCILVTSKTEVVEN-EKCNR 759 (797)
T ss_dssp -------CCS--EEEEECC-------CCCSEEEEESCCSCHHHHHTC-----------CCCEEEEECCHHHHHH-HHHHH
T ss_pred HHHHCCCCCE--EEEECCCHHCCCCCHHCCEEEEECCCCCHHHHHHHCCC-CC---CCCCEEEEEEECCCHHHH-HHHHH
T ss_conf 9851369704--99974805447975108989994899988999985388-87---878659999728768899-99888
Q ss_pred HHHHHHHHHHCC
Q ss_conf 997689898204
Q 001731 800 FKGGLFKTATEH 811 (1019)
Q Consensus 800 ~K~~l~~~~~~~ 811 (1019)
.|..++..++..
T Consensus 760 ~ke~~~~~~i~~ 771 (797)
T 4a2q_A 760 YKEEMMNKAVEK 771 (797)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999998
No 8
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=1.00 E-value=1 Score=355.93 Aligned_cols=377 Identities=19% Similarity=0.208 Sum_probs=263.4
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECC-CCHHHHHHHHHHHCCCCC
Q ss_conf 3898468999999999842278860998399843899999999998463999908999376-108999999999357973
Q 001731 301 GNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPK-TLLSHWIKELTAVGLSAK 379 (1019)
Q Consensus 301 ~~~L~phQ~egV~wL~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~~k~vLIVvP~-sLl~qW~~El~k~~~~~~ 379 (1019)
...|+|||.+++.++.. +.++||+++||+|||++++.++..+ .+++|||||+ .|+.||..+|.+| +..
T Consensus 91 ~~~l~~~Q~~ai~~i~~----~~~~ll~~~TGsGKT~~~l~~i~~~-----~~~~Lvl~P~~~L~~Q~~~~~~~~--~~~ 159 (472)
T 2fwr_A 91 EISLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL-----STPTLIVVPTLALAEQWKERLGIF--GEE 159 (472)
T ss_dssp CCCBCHHHHHHHHHHTT----TTEEEEECCTTSCHHHHHHHHHHHH-----CSCEEEEESSHHHHHHHHHHGGGG--CGG
T ss_pred CCCCCHHHHHHHHHHHH----CCCEEEEECCCCCHHHHHHHHHHHC-----CCCEEEEECCHHHHHHHHHHHHHC--CCC
T ss_conf 99868899999999996----5987999699998899999999980-----999999987999999999999967--996
Q ss_pred -EEEECCCCCCHHHHHHHHHHHCCCEEEECHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHH
Q ss_conf -8997164410245788996507878984189997201112388765676898877702899827854589613786874
Q 001731 380 -IREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSL 458 (1019)
Q Consensus 380 -v~~~~g~~~~~~~~~~~~~~~~~dViItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIiDEAH~iKN~~s~~~kal 458 (1019)
+..+.|.... ..+|+|+||+.+......+. ..|++||+||||++.++... ..+
T Consensus 160 ~v~~~~g~~~~-----------~~~Ivv~T~~~l~~~~~~~~-------------~~~~liIvDEaH~~~~~~~~--~~~ 213 (472)
T 2fwr_A 160 YVGEFSGRIKE-----------LKPLTVSTYDSAYVNAEKLG-------------NRFMLLIFDEVHHLPAESYV--QIA 213 (472)
T ss_dssp GEEEBSSSCBC-----------CCSEEEEEHHHHHHTHHHHT-------------TTCSEEEEETGGGTTSTTTH--HHH
T ss_pred CEEEECCCCCC-----------CCCEEEEECHHHHHHHHHHC-------------CCCCEEEEECCCCCCCHHHH--HHH
T ss_conf 36998787677-----------67789997689997799736-------------87778999897578976899--999
Q ss_pred HCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 30786617996348998998999999975269988993789988200000378731005888842899999999867999
Q 001731 459 LEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYF 538 (1019)
Q Consensus 459 ~~l~a~~RilLTGTPiqN~l~EL~sLl~fl~p~~lg~~~~F~~~f~~pi~~~~~~~a~~~~~~~~~~~~~~L~~~l~p~~ 538 (1019)
..+++.++++|||||.++...+. . +...+.|.+
T Consensus 214 ~~~~~~~~l~lSATp~~~~~~~~----------------~-------------------------------l~~~~~~~~ 246 (472)
T 2fwr_A 214 QMSIAPFRLGLTATFEREDGRHE----------------I-------------------------------LKEVVGGKV 246 (472)
T ss_dssp HTCCCSEEEEEESCCCCTTSGGG----------------S-------------------------------HHHHTCCEE
T ss_pred HHCCCCEEEEEECCCCCCCCHHH----------------H-------------------------------HHHHHCCEE
T ss_conf 73577818999327668897789----------------9-------------------------------999729857
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 98631000356754322336866238999728999999999999569876104899479999999981291344355565
Q 001731 539 LRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAE 618 (1019)
Q Consensus 539 lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~Ls~~Qr~lY~~~l~~~~~~~~~~~~~l~~l~~Lrkic~hP~Ll~~~~~~ 618 (1019)
.++...++. ...+++.....+.+.+++.++..|..+...........+..+. .+.-+.
T Consensus 247 ~~~~~~~l~-------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~~~~~----- 304 (472)
T 2fwr_A 247 FELFPDSLA-------GKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLR----------RAEDFN----- 304 (472)
T ss_dssp EECCHHHHT-------SCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTT----------CCSSST-----
T ss_pred EECCHHHHH-------CCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCC----------CHHHHH-----
T ss_conf 654789870-------6767881899998589989999999999999999986475422----------446689-----
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHH
Q ss_conf 56410247899467999999998996532112466310102316999999998664499913474151999999999985
Q 001731 619 DVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIG 698 (1019)
Q Consensus 619 ~~~~~~~~~~~~e~~~~~e~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~ld~L~~~L~ 698 (1019)
...............-.... .........+.|+..|.+++.. ..++++||||+++.+++.+...|.
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~k~~~l~~~l~~--~~~~k~lvF~~~~~~~~~l~~~l~ 370 (472)
T 2fwr_A 305 KIVMASGYDERAYEALRAWE------------EARRIAFNSKNKIRKLREILER--HRKDKIIIFTRHNELVYRISKVFL 370 (472)
T ss_dssp TTTTTTCCSSSSSTTTHHHH------------HHHHHHHSCSHHHHHHHHHHHH--TSSSCBCCBCSCHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHH------------HHHHHHHCCHHHHHHHHHHHHH--CCCCCEEEEECCHHHHHHHHHHHC
T ss_conf 99987236988999999999------------9999763373899999999985--789838999797999999999748
Q ss_pred HCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCC-C
Q ss_conf 249819999788897889999996406999558999227764344855679899909999901465554444341997-8
Q 001731 699 SKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQK-K 777 (1019)
Q Consensus 699 ~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~VlLlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QaiGRa~RiGQ~-k 777 (1019)
+..++|+++..+|+++++.|+++... +|++|+++++|+|++.++.||+||++||+..+.|++||++|.||. +
T Consensus 371 -----~~~~~g~~~~~~R~~~~~~F~~g~~~--vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~ 443 (472)
T 2fwr_A 371 -----IPAITHRTSREEREEILEGFRTGRFR--AIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKK 443 (472)
T ss_dssp -----CCBCCSSSCSHHHHTHHHHHHHSSCS--BCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTC
T ss_pred -----CCEEECCCCHHHHHHHHHHHHCCCCC--EEEECCCHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCC
T ss_conf -----65562899999999999998679988--89985705148462028689998999988899998763157779985
Q ss_pred CEEEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 489999960899999999999999768
Q 001731 778 DVVVYRLMTCGTVEEKIYRKQIFKGGL 804 (1019)
Q Consensus 778 ~V~VyrLit~gTIEEkI~~rq~~K~~l 804 (1019)
.|++|.|++.+|+|+++.+++..|..+
T Consensus 444 ~~~i~~lv~~~t~ee~~~~~r~~~~~~ 470 (472)
T 2fwr_A 444 EAVLYELISRGTGEVNTARRRKNAAKG 470 (472)
T ss_dssp CEEEEEEEECSCC--------------
T ss_pred EEEEEEEEECCCCHHHHHHHHHHHHCC
T ss_conf 399999981998537999999876505
No 9
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=1.00 E-value=1 Score=347.64 Aligned_cols=252 Identities=31% Similarity=0.471 Sum_probs=222.7
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHCCHH
Q ss_conf 9998631000356754322336866238999728999999999999569876104------8994799999999812913
Q 001731 537 YFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAF------DGSPLAALTILKKICDHPL 610 (1019)
Q Consensus 537 ~~lRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~Ls~~Qr~lY~~~l~~~~~~~~~------~~~~l~~l~~Lrkic~hP~ 610 (1019)
--+||+|.+|.. .||++.+.+++|+|++.|+.+|+.++......... ....+..++.||++|+||.
T Consensus 12 ~~~rr~k~~v~~--------~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lrq~~~hP~ 83 (271)
T 1z5z_A 12 SGLVPRGSHMAS--------DLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPA 83 (271)
T ss_dssp ------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTCTH
T ss_pred CCCCCCHHHHHH--------HCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHH
T ss_conf 564164877875--------199977999981899999999999999999999740352128899999999999848998
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHH
Q ss_conf 44355565564102478994679999999989965321124663101023169999999986644999134741519999
Q 001731 611 LLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKML 690 (1019)
Q Consensus 611 Ll~~~~~~~~~~~~~~~~~~e~~~~~e~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~~~g~KvLIFsq~~~~l 690 (1019)
++.... .....|+|+..|.++|..+...++|+||||+++.++
T Consensus 84 l~~~~~--------------------------------------~~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~ 125 (271)
T 1z5z_A 84 LLKGGE--------------------------------------QSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMG 125 (271)
T ss_dssp HHHCSC--------------------------------------CCSTTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHH
T ss_pred HHCCCC--------------------------------------CCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHH
T ss_conf 846873--------------------------------------223468999999999999986799699995519999
Q ss_pred HHHHHHHHHC-CCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHH
Q ss_conf 9999998524-981999978889788999999640699955899922776434485567989990999990146555444
Q 001731 691 NLIQESIGSK-GYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDR 769 (1019)
Q Consensus 691 d~L~~~L~~~-gi~~~ridG~~s~~eR~~iI~~F~~~~~~~VlLlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QaiGR 769 (1019)
+.|...|... |+++.+++|+++..+|+++++.|++++...|+|+||++||+||||+.|++||+||+||||..+.||+||
T Consensus 126 ~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR 205 (271)
T 1z5z_A 126 KIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDR 205 (271)
T ss_dssp HHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC------
T ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 99999998733984799979999999999999832899997899722351588676448999997999985189999985
Q ss_pred HHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCHHHHHHHHCCCCCCC
Q ss_conf 43419978489999960899999999999999768989820410-002479988999874999998
Q 001731 770 AYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKE-QIRYFSQQDLRELLSLPKQGF 834 (1019)
Q Consensus 770 a~RiGQ~k~V~VyrLit~gTIEEkI~~rq~~K~~l~~~~~~~~~-~~r~fs~~dL~eLf~l~~~~~ 834 (1019)
++|+||+++|+||+|++.+|+||+|++++..|..++..+++..+ ....++.+||.+||++..+|+
T Consensus 206 ~~R~Gq~~~v~v~~li~~~TiEe~i~~~~~~K~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 271 (271)
T 1z5z_A 206 VYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSGDSWITELSTEELRKVIELSVGGY 271 (271)
T ss_dssp --------CCEEEEEEETTSHHHHHHHHHHHCHHHHTTGGGGTTHHHHTSCHHHHHHHHSCCCTTC
T ss_pred CCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHCCCCCCC
T ss_conf 232389985699998549889999999999999999999716705432389999999965588999
No 10
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=1.00 E-value=1 Score=335.68 Aligned_cols=464 Identities=13% Similarity=0.127 Sum_probs=272.7
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCC---CCEEEEEECC-CCHHHHHHHHHHHCC-
Q ss_conf 89846899999999984227886099839984389999999999846399---9908999376-108999999999357-
Q 001731 302 NMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRL---IKRALVVAPK-TLLSHWIKELTAVGL- 376 (1019)
Q Consensus 302 ~~L~phQ~egV~wL~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~~~---~k~vLIVvP~-sLl~qW~~El~k~~~- 376 (1019)
..|+|||.+++.++.. +.++|++++||+|||++++..+........ .+++|||||+ .|+.||..++.++++
T Consensus 6 ~~~~~~Q~~~i~~~~~----~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 81 (556)
T 4a2p_A 6 KKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 81 (556)
T ss_dssp --CCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHHHC----CCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCC
T ss_conf 7877999999999974----998999819997189999999999998374567986999928899999999999987240
Q ss_pred -CCCEEEECCCCCCHHHHHHHHHHHCCCEEEECHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHH
Q ss_conf -9738997164410245788996507878984189997201112388765676898877702899827854589613786
Q 001731 377 -SAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRA 455 (1019)
Q Consensus 377 -~~~v~~~~g~~~~~~~~~~~~~~~~~dViItTy~~l~~~~~~l~~~~~~~~~~~~~~~~wd~VIiDEAH~iKN~~s~~~ 455 (1019)
+..+..++|....... ........+|+|+||+.+......... .....|++||+||||++.+......
T Consensus 82 ~~~~~~~~~g~~~~~~~--~~~~~~~~~i~v~T~~~l~~~~~~~~~---------~~~~~~~~vViDEah~~~~~~~~~~ 150 (556)
T 4a2p_A 82 QGYSVQGISGENFSNVS--VEKVIEDSDIIVVTPQILVNSFEDGTL---------TSLSIFTLMIFDECHNTTGNHPYNV 150 (556)
T ss_dssp GTCCEEECCCC-----C--HHHHHHHCSEEEECHHHHHHHHHSSSC---------CCSTTCSEEEEETGGGCSTTSHHHH
T ss_pred CCCEEEEEECCCCCCHH--HHHHHCCCCEEEECHHHHHHHHHHCCC---------CCCCCCCEEEEECCCCCCCCCHHHH
T ss_conf 69459998289874222--898617999999889999999983750---------2503077999988753588645999
Q ss_pred HHHHC--------CCCCCEEEEECCCCCCCH-------HHHHHHHHHHCCCC----CCCHHHHHHHHHCCCCCCCCCC--
Q ss_conf 87430--------786617996348998998-------99999997526998----8993789988200000378731--
Q 001731 456 KSLLE--------IPSAHRIIISGTPIQNNL-------KELWALFNFCCPEL----LGDNKWFKEKYELPILRGNDKH-- 514 (1019)
Q Consensus 456 kal~~--------l~a~~RilLTGTPiqN~l-------~EL~sLl~fl~p~~----lg~~~~F~~~f~~pi~~~~~~~-- 514 (1019)
..... -+..++++|||||.+++. ..+..+...+.+.. ......+...+..|........
T Consensus 151 ~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (556)
T 4a2p_A 151 LMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRR 230 (556)
T ss_dssp HHHHHHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCC
T ss_pred HHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCHHCCHHHHHHCCCCCCEEEEECCCC
T ss_conf 99999985301368887699994785667516699999999999985398484333202677874279985379982787
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-----------EEEEEECCCHHHHHHHHHHHH
Q ss_conf 005888842899999999867999986310003567543223368662-----------389997289999999999995
Q 001731 515 ALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKN-----------EMIVWLRLTSCQRQLYEAFLN 583 (1019)
Q Consensus 515 a~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~~~~~~~~~LP~k~-----------e~vv~~~Ls~~Qr~lY~~~l~ 583 (1019)
...............+...+.. ........... ...+.... ......+....+..+|..+..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (556)
T 4a2p_A 231 IHNPFAAIISNLMSETEALMRT----IYSVDTLSQNS---KKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFI 303 (556)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHH----HCC------------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHCCC---CCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 6775999999999999999988----86320121033---3344335678999999998776405432016789999999
Q ss_pred HHHHHHH--------CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6987610--------48994799999999812913443555655641024789946799999999899653211246631
Q 001731 584 SEIVLSA--------FDGSPLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQ 655 (1019)
Q Consensus 584 ~~~~~~~--------~~~~~l~~l~~Lrkic~hP~Ll~~~~~~~~~~~~~~~~~~e~~~~~e~l~~~~~~~~~~~~~~~~ 655 (1019)
....... ...........++..+... ........+.............. ......
T Consensus 304 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~ 366 (556)
T 4a2p_A 304 CTEHLRKYNDALIISEDARIIDALSYLTEFFTNV--------------KNGPYTELEQHLTAKFQEKEPEL---IALSKD 366 (556)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH--------------HHSCCCHHHHHHHHHHHTTHHHH---HHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHCCCCHHHHHHHHHHHHHHHHH---HHHCCC
T ss_conf 9999999999998861120789999999999998--------------73379878999999876678876---421037
Q ss_pred CCCHHHHHHHHHHHHHHHC--CCCCCEEEECCCHHHHHHHHHHHHHC------------CCEEEEEECCCCHHHHHHHHH
Q ss_conf 0102316999999998664--49991347415199999999998524------------981999978889788999999
Q 001731 656 HDNISCKISFILSLLDKLI--PEGHNVLIFSQTRKMLNLIQESIGSK------------GYKFLRIDGTTKASDRVKIVN 721 (1019)
Q Consensus 656 ~~~~S~Kl~~L~~LL~~~~--~~g~KvLIFsq~~~~ld~L~~~L~~~------------gi~~~ridG~~s~~eR~~iI~ 721 (1019)
....++|+..|.++|.... ..++|+||||+++.+++.|...|... |..+..++|+++..+|.++++
T Consensus 367 ~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~ 446 (556)
T 4a2p_A 367 ETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLD 446 (556)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC-----------------------
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHH
T ss_conf 89999699999999999834799854999976589999999999858775500014787367765565669899999999
Q ss_pred HHHC-CCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHH
Q ss_conf 6406-999558999227764344855679899909999901465554444341997848999996089999999999999
Q 001731 722 DFQE-GDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIF 800 (1019)
Q Consensus 722 ~F~~-~~~~~VlLlST~agg~GLNLt~A~~VIi~D~~WNp~~~~QaiGRa~RiGQ~k~V~VyrLit~gTIEEkI~~rq~~ 800 (1019)
.|++ +... +|++|+++++|||++.++.||+||+||||..+.|++|| . +.+++.+|.|++.++++++ +..+..
T Consensus 447 ~F~~~g~~~--vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-g---R~~~g~~~~l~~~~~~~~~-~~~~~~ 519 (556)
T 4a2p_A 447 AFKTSKDNR--LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-G---RAAGSKCILVTSKTEVVEN-EKCNRY 519 (556)
T ss_dssp -------CC--EEEEEC-----------CEEEEETCCSCHHHHHHC------------CCEEEEESCHHHHHH-HHHHHH
T ss_pred HHCCCCCEE--EEEECCCHHCCCCCHHCCEEEEECCCCCHHHHHHHCCC-C---CCCCCEEEEEEECCCHHHH-HHHHHH
T ss_conf 840469658--99976704337775217889991899978899886387-8---7888418999827636777-775579
Q ss_pred HHHHHHHHHCC
Q ss_conf 97689898204
Q 001731 801 KGGLFKTATEH 811 (1019)
Q Consensus 801 K~~l~~~~~~~ 811 (1019)
|..++..++..
T Consensus 520 k~~~~~~~i~~ 530 (556)
T 4a2p_A 520 KEEMMNKAVEK 530 (556)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999997
Done!