BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001732
(1019 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|F4IN69|MD33B_ARATH Mediator of RNA polymerase II transcription subunit 33B
OS=Arabidopsis thaliana GN=MED33B PE=1 SV=1
Length = 1275
Score = 1268 bits (3280), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 660/1031 (64%), Positives = 785/1031 (76%), Gaps = 50/1031 (4%)
Query: 10 TSRSALWLPIDLFLEDAMDGTQVAATSAVEILTGLVKALQVVNGTTWHDTFLG------- 62
TS SALWLPIDLF ED MDGTQ AA SAVE LTGLVKALQ N T+WHD FL
Sbjct: 268 TSDSALWLPIDLFFEDIMDGTQAAAASAVENLTGLVKALQAANSTSWHDAFLALWLAALR 327
Query: 63 ------------LWIAALRLLQRERDPSEGPVPRIDSSLCMVLSVTTLTVADIIEEEESE 110
++ L +L ERDP EGPVPR D+ LC++LSVT L VA+IIEEEES+
Sbjct: 328 LVQRENLCLRYCFFMHMLEILSEERDPIEGPVPRTDTFLCVLLSVTPLAVANIIEEEESQ 387
Query: 111 LIDETEQSPSNLPKDKQAPGRRRKDLVTSLQLLGDFEDMLTPPPFVRSIANQAAAKAIMF 170
ID+T SPSN K+K+ G+ R+ L+ SLQ LGD+E +LTPP V+S+ANQAAAKAIMF
Sbjct: 388 WIDQTSSSPSNQWKEKK--GKCRQGLINSLQQLGDYESLLTPPRSVQSVANQAAAKAIMF 445
Query: 171 ISGLTVGNGYYESVSMNGLATSCLGNMRHLIVEACIAR-NLLDTSAYLWPGYVNASDSNQ 229
ISG+T NG YE+ SM+ A+ C C R +L ++ G
Sbjct: 446 ISGITNSNGSYENTSMSESASGC-----------CKVRFSLFTLKMFVVMGVY------- 487
Query: 230 VPCSIATQMSGWSSLMKGSPLTPSLTNALVVTPASSLAEIEKVYEIAVNGSDDEKICAAT 289
+ C+I S WS +MKGSPLTPSLTN+L+ TPASSLAEIEK+YE+A GS+DEKI A+
Sbjct: 488 LLCNI----SCWSLVMKGSPLTPSLTNSLITTPASSLAEIEKMYEVATTGSEDEKIAVAS 543
Query: 290 VLCGASLVRGWSVQENTILFIIKLLSPPVPADYSGSESHLIGYAALLNTLLVGISSVDCI 349
+LCGASL RGWS+QE+ I+FI+ LLSPP PAD SGS SHLI A LN LLVGIS +DC+
Sbjct: 544 ILCGASLFRGWSIQEHVIIFIVTLLSPPAPADLSGSYSHLINSAPFLNVLLVGISPIDCV 603
Query: 350 QIFSLHGWVPLLAAALMPICEVFGSSIPNASWTLSSGEEFSCYAVFSNAFTILVRLWRFH 409
IFSLHG VPLLA ALMPICE FGS +PN +WTL +GE S +AVFS AFT+L+RLWRF
Sbjct: 604 HIFSLHGVVPLLAGALMPICEAFGSGVPNITWTLPTGELISSHAVFSTAFTLLLRLWRFD 663
Query: 410 KPPLEQLTVDMPLVASQLSPEYLLLVRNSKLASFGTSPKDQMKSKRFSKNIKFSTDPIFM 469
PPL+ + D+P V Q SPEYLLLVRN +L FG SPKD+M +RFSK I S DPIFM
Sbjct: 664 HPPLDYVLGDVPPVGPQPSPEYLLLVRNCRLECFGKSPKDRMARRRFSKVIDISVDPIFM 723
Query: 470 DSFPKLKRWYRQNEECIASTLTGLVHGTSVHLIVDALLTKMFRKINRSGTPLTSATSGST 529
DSFP+LK+WYRQ++EC+AS L+ L G+ VH IVD+LL+ MF+K N+ G+ + +SGS+
Sbjct: 724 DSFPRLKQWYRQHQECMASILSELKTGSPVHHIVDSLLSMMFKKANKGGSQSLTPSSGSS 783
Query: 530 NSSGSGLEDVSIKLKVPAWDILEATPFVLDAALAACAHGRLSPRELATGLKELSDCLPAT 589
+ S SG +D S +LK+PAWDILEA PFVLDAAL ACAHG LSPRELATGLK L+D LPAT
Sbjct: 784 SLSTSGGDDSSDQLKLPAWDILEAAPFVLDAALTACAHGSLSPRELATGLKILADFLPAT 843
Query: 590 LATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPTVAVGGN 649
L T+VSYFS+EVTRGLWKP MNGTDWPSPA NL+S+EQQI+KILAATGVDVP + G
Sbjct: 844 LGTMVSYFSSEVTRGLWKPVSMNGTDWPSPAANLASVEQQIEKILAATGVDVPRLPADGI 903
Query: 650 SPATLPLPLAALVSLTITFKLDKASDRFLALVGLGLSSLASSCPWPCMPIVASLWAQKVK 709
S ATLPLPLAALVSLTIT+KLDKA++RFL LVG L SLA++CPWPCMPIV SLW QKVK
Sbjct: 904 SAATLPLPLAALVSLTITYKLDKATERFLVLVGPALDSLAAACPWPCMPIVTSLWTQKVK 963
Query: 710 RWNDFLVFSASGTVFHYNTDAVVQLLKSCFTSTLGLT-SSHNYSNGGVGALLGHGFGSHF 768
RW+DFL+FSAS TVFH+N DAV+QLL+SCFT TLGLT +S S GGVGALLGHGFGS +
Sbjct: 964 RWSDFLIFSASRTVFHHNRDAVIQLLRSCFTCTLGLTPTSQLCSYGGVGALLGHGFGSRY 1023
Query: 769 SGGISPVGPGILYLRVHRSVRDVMFMKEEILSILMHCVRDIASCGLPREKLEKLKKTKHG 828
SGGIS PGILY++VHRS+RDVMF+ EEILS+LM V+ IA+ LP + EKLKKTK G
Sbjct: 1024 SGGISTAAPGILYIKVHRSIRDVMFLTEEILSLLMFSVKSIATRELPAGQAEKLKKTKDG 1083
Query: 829 MRY--GQVSLAAAMTRAKLAASLGASLVWISGGSSLVHSLLTETLPSWFISVHGLVQEGG 886
RY GQVSL+ AM R KLAASLGASLVWISGG +LV +L+ ETLPSWFISVHG E
Sbjct: 1084 SRYGIGQVSLSLAMRRVKLAASLGASLVWISGGLNLVQALIKETLPSWFISVHG---EED 1140
Query: 887 ESGCMVGMLGGYALAYFAVFCATFAWGVDSESRASKKRPTVLGTHLEFLASALDRKISVG 946
E G MV ML GYALAYFA+ + FAWGVDS ASK+RP VL HLEF+ SAL+ KIS+G
Sbjct: 1141 ELGGMVPMLRGYALAYFAILSSAFAWGVDSSYPASKRRPRVLWLHLEFMVSALEGKISLG 1200
Query: 947 CDCATWRAYVSGFVTLIVGCTPTWMLEINVDALKRLSKGLRQWDEEELALTLLGVGGVGA 1006
CD ATW+AYV+GFV+L+V CTP W+LE++V+ +KRLSK LRQW+E++LAL LL GG+G
Sbjct: 1201 CDWATWQAYVTGFVSLMVQCTPAWVLEVDVEVIKRLSKSLRQWNEQDLALALLCAGGLGT 1260
Query: 1007 MGAAAQLIVES 1017
MGAA +LIVE+
Sbjct: 1261 MGAATELIVET 1271
>sp|Q9LUG9|MD33A_ARATH Mediator of RNA polymerase II transcription subunit 33A
OS=Arabidopsis thaliana GN=MED33A PE=1 SV=1
Length = 1309
Score = 1238 bits (3202), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 617/1017 (60%), Positives = 774/1017 (76%), Gaps = 22/1017 (2%)
Query: 2 SLAGQCNGTSRSALWLPIDLFLEDAMDGTQVAATSAVEILTGLVKALQVVNGTTWHDTFL 61
S AG C+G S S+LWLP+DL EDAMDG QV TSA+EI+TGL K L+ +NG+TWHDTFL
Sbjct: 310 SYAGLCHGASLSSLWLPLDLVFEDAMDGYQVNPTSAIEIITGLAKTLKEINGSTWHDTFL 369
Query: 62 GLWIAALRLLQRERDPSEGPVPRIDSSLCMVLSVTTLTVADIIEEEESELIDETEQSPSN 121
GLWIAALRL+QRERDP EGP+PR+D+ LCM L + L VA++IEE + E + E
Sbjct: 370 GLWIAALRLVQRERDPIEGPIPRLDTRLCMSLCIVPLVVANLIEEGKYESVME------- 422
Query: 122 LPKDKQAPGRRRKDLVTSLQLLGDFEDMLTPPPFVRSIANQAAAKAIMFISGLTVGNGYY 181
+ R DLVTSLQ+LGDF +L PP V S AN+AA KAI+F+SG VG +
Sbjct: 423 ---------KLRDDLVTSLQVLGDFPGLLAPPKCVVSAANKAATKAILFLSGGNVGKSCF 473
Query: 182 ESVSMNGLATSCLGNMRHLIVEACIARNLLDTSAYLWPGYVNASDSNQVPCSIATQMSGW 241
+ ++M + +C GNMRHLIVEACIARN+LD SAY WPGYVN NQ+P S+ ++ W
Sbjct: 474 DVINMKDMPVNCSGNMRHLIVEACIARNILDMSAYSWPGYVNGR-INQIPQSLPNEVPCW 532
Query: 242 SSLMKGSPLTPSLTNALVVTPASSLAEIEKVYEIAVNGSDDEKICAATVLCGASLVRGWS 301
SS +KG+PL ++ N LV PASSLAE+EK++E+AV GSDDEKI AATVLCGASL RGW+
Sbjct: 533 SSFVKGAPLNAAMVNTLVSVPASSLAELEKLFEVAVKGSDDEKISAATVLCGASLTRGWN 592
Query: 302 VQENTILFIIKLLSPPVPADYSGSESHLIGYAALLNTLLVGISSVDCIQIFSLHGWVPLL 361
+QE+T+ ++ +LLSPPVPADYS +E+HLIGYA +LN ++VGI SVD IQIFSLHG VP L
Sbjct: 593 IQEHTVEYLTRLLSPPVPADYSRAENHLIGYACMLNVVIVGIGSVDSIQIFSLHGMVPQL 652
Query: 362 AAALMPICEVFGSSIPNASWTLSSGEEFSCYAVFSNAFTILVRLWRFHKPPLEQLTVDMP 421
A +LMPICE FGS P+ SWTL SGE S Y+VFSNAFT+L++LWRF+ PP+E D+P
Sbjct: 653 ACSLMPICEEFGSYTPSVSWTLPSGEAISAYSVFSNAFTLLLKLWRFNHPPIEHGVGDVP 712
Query: 422 LVASQLSPEYLLLVRNSKLASFGTSPKDQMKSKRFSKNIKF-STDPIFMDSFPKLKRWYR 480
V SQL+PE+LL VRNS L S +D+ + KR S+ + S P+F+DSFPKLK WYR
Sbjct: 713 TVGSQLTPEHLLSVRNSYLVSSEILDRDRNR-KRLSEVARAASCQPVFVDSFPKLKVWYR 771
Query: 481 QNEECIASTLTGLVHGTSVHLIVDALLTKMFRKINRSGTPLTSATSGSTNSSGSGLEDVS 540
Q++ CIA+TL+GL HG+ VH V+ALL F K+ S T L SG+++SSG+ ED +
Sbjct: 772 QHQRCIAATLSGLTHGSPVHQTVEALLNMTFGKVRGSQT-LNPVNSGTSSSSGAASEDSN 830
Query: 541 IKLKVPAWDILEATPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLATVVSYFSAE 600
I+ + PAWDIL+A P+V+DAAL AC HGRLSPR+LATGLK+L+D LPA+LAT+VSYFSAE
Sbjct: 831 IRPEFPAWDILKAVPYVVDAALTACTHGRLSPRQLATGLKDLADFLPASLATIVSYFSAE 890
Query: 601 VTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPTVAVGGNSPATLPLPLAA 660
V+RG+WKP FMNG DWPSPATNLS++E+ I KILA TGVD+P++A GG+SPATLPLPLAA
Sbjct: 891 VSRGVWKPVFMNGVDWPSPATNLSTVEEYITKILATTGVDIPSLAPGGSSPATLPLPLAA 950
Query: 661 LVSLTITFKLDKASDRFLALVGLGLSSLASSCPWPCMPIVASLWAQKVKRWNDFLVFSAS 720
VSLTIT+K+DKAS+RFL L G L LA+ CPWPCMPIVASLW QK KRW DFLVFSAS
Sbjct: 951 FVSLTITYKIDKASERFLNLAGPALECLAAGCPWPCMPIVASLWTQKAKRWFDFLVFSAS 1010
Query: 721 GTVFHYNTDAVVQLLKSCFTSTLGLTSSHNYSNGGVGALLGHGFGSHFSGGISPVGPGIL 780
TVF +N DAV+QLL++CF++TLGL ++ ++GGVGALLGHGFGSHF GGISPV PGIL
Sbjct: 1011 RTVFLHNQDAVIQLLRNCFSATLGLNAAPMSNDGGVGALLGHGFGSHFYGGISPVAPGIL 1070
Query: 781 YLRVHRSVRDVMFMKEEILSILMHCVRDIASCGLPREKLEKLKKTKHGMRYGQVSLAAAM 840
YLR++R++RD + + EEILS+L+H V DIA L +EKLEKLK K+G RYGQ SLA AM
Sbjct: 1071 YLRMYRALRDTVSVSEEILSLLIHSVEDIAQNRLSKEKLEKLKTVKNGSRYGQSSLATAM 1130
Query: 841 TRAKLAASLGASLVWISGGSSLVHSLLTETLPSWFISVHGLVQEGGESGCMVGMLGGYAL 900
T+ KLAASL ASLVW++GG +VH L+ ET+PSWF+S +E G S +V L G+AL
Sbjct: 1131 TQVKLAASLSASLVWLTGGLGVVHVLIKETIPSWFLSTDKSDREQGPSD-LVAELRGHAL 1189
Query: 901 AYFAVFCATFAWGVD-SESRASKKRPTVLGTHLEFLASALDRKISVGCDCATWRAYVSGF 959
AYF V C WGVD S + ++R +LG+HLEF+ASALD KISVGC+ ATWR Y+SG
Sbjct: 1190 AYFVVLCGALTWGVDSRSSASKRRRQAILGSHLEFIASALDGKISVGCETATWRTYISGL 1249
Query: 960 VTLIVGCTPTWMLEINVDALKRLSKGLRQWDEEELALTLLGVGGVGAMGAAAQLIVE 1016
V+L+V C P W+ EI+ + LK LS GLR+W ++ELA+ LL +GG+ M AA I+
Sbjct: 1250 VSLMVSCLPLWVTEIDTEVLKSLSNGLRKWGKDELAIVLLSLGGLKTMDYAADFIIH 1306
>sp|Q8YG89|SYC_BRUME Cysteine--tRNA ligase OS=Brucella melitensis biotype 1 (strain 16M
/ ATCC 23456 / NCTC 10094) GN=cysS PE=3 SV=1
Length = 506
Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%)
Query: 567 HGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPA 620
+ R PR A + L + L V SY E+ LWKP+ WPSPA
Sbjct: 163 NARKGPRYGALARRSLDEMLAGARVDVASYKRDEMDFVLWKPSKKGEPGWPSPA 216
>sp|C0RI19|SYC_BRUMB Cysteine--tRNA ligase OS=Brucella melitensis biotype 2 (strain ATCC
23457) GN=cysS PE=3 SV=1
Length = 506
Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%)
Query: 567 HGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPA 620
+ R PR A + L + L V SY E+ LWKP+ WPSPA
Sbjct: 163 NARKGPRYGALARRSLDEMLAGARVDVASYKRDEMDFVLWKPSKKGEPGWPSPA 216
>sp|Q8G1N5|SYC_BRUSU Cysteine--tRNA ligase OS=Brucella suis biovar 1 (strain 1330)
GN=cysS PE=3 SV=1
Length = 506
Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%)
Query: 567 HGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPA 620
+ R PR A + L + L V SY E+ LWKP+ WPSPA
Sbjct: 163 NARKGPRYGALARRSLDEMLAGARVDVASYKRDEMDFVLWKPSKKGEPGWPSPA 216
>sp|A9MA50|SYC_BRUC2 Cysteine--tRNA ligase OS=Brucella canis (strain ATCC 23365 / NCTC
10854) GN=cysS PE=3 SV=1
Length = 506
Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%)
Query: 567 HGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPA 620
+ R PR A + L + L V SY E+ LWKP+ WPSPA
Sbjct: 163 NARKGPRYGALARRSLDEMLAGARVDVASYKRDEMDFVLWKPSKKGEPGWPSPA 216
>sp|B0CL02|SYC_BRUSI Cysteine--tRNA ligase OS=Brucella suis (strain ATCC 23445 / NCTC
10510) GN=cysS PE=3 SV=1
Length = 506
Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%)
Query: 567 HGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPA 620
+ R PR A + L + L V SY E+ LWKP+ WPSPA
Sbjct: 163 NARKGPRYGALARRSLDEMLAGARVDVASYKRDEMDFVLWKPSKKGEPGWPSPA 216
>sp|Q57E65|SYC_BRUAB Cysteine--tRNA ligase OS=Brucella abortus biovar 1 (strain 9-941)
GN=cysS PE=3 SV=1
Length = 506
Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%)
Query: 567 HGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPA 620
+ R PR A + L + L V SY E+ LWKP+ WPSPA
Sbjct: 163 NARKGPRYGALARRSLDEMLAGARVDVASYKRDEMDFVLWKPSKKGEPGWPSPA 216
>sp|Q2YN22|SYC_BRUA2 Cysteine--tRNA ligase OS=Brucella abortus (strain 2308) GN=cysS
PE=3 SV=1
Length = 506
Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%)
Query: 567 HGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPA 620
+ R PR A + L + L V SY E+ LWKP+ WPSPA
Sbjct: 163 NARKGPRYGALARRSLDEMLAGARVDVASYKRDEMDFVLWKPSKKGEPGWPSPA 216
>sp|B2S4T7|SYC_BRUA1 Cysteine--tRNA ligase OS=Brucella abortus (strain S19) GN=cysS PE=3
SV=1
Length = 506
Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%)
Query: 567 HGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPA 620
+ R PR A + L + L V SY E+ LWKP+ WPSPA
Sbjct: 163 NARKGPRYGALARRSLDEMLAGARVDVASYKRDEMDFVLWKPSKKGEPGWPSPA 216
>sp|A5VPL3|SYC_BRUO2 Cysteine--tRNA ligase OS=Brucella ovis (strain ATCC 25840 / 63/290
/ NCTC 10512) GN=cysS PE=3 SV=1
Length = 506
Score = 35.0 bits (79), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 23/52 (44%)
Query: 569 RLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPA 620
R PR A + L + L V SY E+ LWKP+ WPSPA
Sbjct: 165 RKGPRYGALARRSLDEMLAGARVDVASYKRDEMDFVLWKPSKKGEPGWPSPA 216
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 363,730,658
Number of Sequences: 539616
Number of extensions: 14989007
Number of successful extensions: 39662
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 39636
Number of HSP's gapped (non-prelim): 21
length of query: 1019
length of database: 191,569,459
effective HSP length: 128
effective length of query: 891
effective length of database: 122,498,611
effective search space: 109146262401
effective search space used: 109146262401
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)