Query 001732
Match_columns 1019
No_of_seqs 42 out of 44
Neff 2.5
Searched_HMMs 29240
Date Tue Mar 26 17:22:10 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001732.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1027-1031//hhsearch_pdb/001732hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sp1_A Cysteinyl-tRNA syntheta 1.0 1 1 17.0 0.4 85 330-424 6-95 (501)
2 3iac_A Glucuronate isomerase; 1.0 1 1 16.7 0.5 64 345-415 26-106 (473)
3 1g12_A Peptidyl-Lys metalloend 1.0 1 1 16.2 -1.1 48 923-971 52-102 (167)
4 3tou_A Glutathione S-transfera 1.0 1 1 16.0 0.5 37 468-504 178-216 (226)
5 3lsz_A Glutathione S-transfera 1.0 1 1 15.9 0.9 35 467-501 187-223 (225)
6 4dix_A Plectin-related protein 1.0 1 1 15.3 0.1 45 572-626 96-140 (230)
7 4e98_A CUTA1 divalent ION tole 1.0 1 1 15.2 -0.0 26 197-224 52-83 (138)
8 3gsd_A Divalent-cation toleran 1.0 1 1 15.1 -0.0 26 197-224 37-68 (122)
9 2i5o_A DNA polymerase ETA; zin 1.0 1 1 15.0 2.0 21 292-313 15-36 (39)
10 3a1y_A 50S ribosomal protein P 1.0 1 1 14.7 2.2 15 627-641 19-33 (58)
No 1
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=1.00 E-value=1 Score=17.00 Aligned_cols=85 Identities=14% Similarity=-0.025 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHCCCCCCCEEEEE-CCCCHHHHHHHHHHHHHH-HCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 121458999994398544034210-035315667653345655-137899998645888865234668889999999741
Q 001732 330 IGYAALLNTLLVGISSVDCIQIFS-LHGWVPLLAAALMPICEV-FGSSIPNASWTLSSGEEFSCYAVFSNAFTILVRLWR 407 (1019)
Q Consensus 330 i~~~pmLn~ll~GissvD~v~I~S-LhGlvP~lAa~LMPiCEv-FGS~~P~~s~t~~~gee~S~~~VFS~AFl~LlrLWk 407 (1019)
-.||-.|.+--.|-.... ++|+. |-+-.-+ +-|+-.| |=.|.|++.-.+-.| |+---..|=.+.|..+
T Consensus 6 ~~~~~~~~~~~~~~~~m~-l~lyntltr~ke~----f~p~~~v~~YvcgPTvYg~~HIG-----Har~~v~~Dvl~R~lr 75 (501)
T 3sp1_A 6 HHHMGTLEAQTQGPGSMI-LKLYNTRTKDFSE----LTNFENVKVYACGPTVYNYAHIG-----NFRTYIFGDLLIKTLR 75 (501)
T ss_dssp ----------------CC-EEEEETTTTEEEE----ECCCSCEEEEECCCBCSSCCCHH-----HHHHHHHHHHHHHHHH
T ss_pred CCCCCCEECCCCCCCCCE-EEEEECCCCCCCC----CCCCCCCEEEECCCCCCCCCCHH-----HHHHHHHHHHHHHHHH
T ss_conf 333332003444887772-7999878896003----41167451996889478972055-----5398999999999999
Q ss_pred CCCCCHHHC---CCCCCCCC
Q ss_conf 199950000---26887655
Q 001732 408 FHKPPLEQL---TVDMPLVA 424 (1019)
Q Consensus 408 F~~PPlE~~---~g~g~~vg 424 (1019)
+.--...|+ ++.|-..|
T Consensus 76 ~~Gy~V~~v~niTDvGhltG 95 (501)
T 3sp1_A 76 FLGYKVNYAMNITDIGHLTG 95 (501)
T ss_dssp HHTCCEEEEEEEBCSCCC--
T ss_pred HCCCCEEEEEEECCCCCCCC
T ss_conf 71996168866434333467
No 2
>3iac_A Glucuronate isomerase; IDP02065, structural genom center for structural genomics of infectious diseases, CSGI; 2.22A {Salmonella typhimurium} SCOP: c.1.9.0
Probab=1.00 E-value=1 Score=16.70 Aligned_cols=64 Identities=14% Similarity=0.242 Sum_probs=28.3
Q ss_pred CCCCEEEEECCCCHH--HHHH--HHHHHHHHH-C-----------CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-H
Q ss_conf 544034210035315--6676--533456551-3-----------789999864588886523466888999999974-1
Q 001732 345 SVDCIQIFSLHGWVP--LLAA--ALMPICEVF-G-----------SSIPNASWTLSSGEEFSCYAVFSNAFTILVRLW-R 407 (1019)
Q Consensus 345 svD~v~I~SLhGlvP--~lAa--~LMPiCEvF-G-----------S~~P~~s~t~~~gee~S~~~VFS~AFl~LlrLW-k 407 (1019)
++.-.+|++-|+-++ ++|. ..=-|-|++ + .-+|..-. +|.+.+.+..| .-+-+-| +
T Consensus 26 ~a~~lPIiDyH~Hl~P~~iaen~~F~nit~lwl~gDHYkwR~mrs~Gv~e~~i---tG~~a~~~ekf----~~~A~t~p~ 98 (473)
T 3iac_A 26 YAAPMPIYDFHCHLSPQEIADDRRFDNLGQIWLEGDHYKWRALRSAGVDESLI---TGKETSDYEKY----MAWANTVPK 98 (473)
T ss_dssp TTTTSCEEECSCCCCHHHHHHTCCCSCHHHHHHSSCSHHHHHHHHTTCCGGGT---TCTTSCHHHHH----HHHHHHGGG
T ss_pred HHHCCCEECCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHCCCCHHHC---CCCCCCHHHHH----HHHHHHHHH
T ss_conf 98469877988897978853688999989985158369999999859988874---69999969999----999998777
Q ss_pred CCCCCHHH
Q ss_conf 19995000
Q 001732 408 FHKPPLEQ 415 (1019)
Q Consensus 408 F~~PPlE~ 415 (1019)
|-+-|+-|
T Consensus 99 ~~gnPly~ 106 (473)
T 3iac_A 99 TLGNPLYH 106 (473)
T ss_dssp CTTSHHHH
T ss_pred HCCCHHHH
T ss_conf 55888899
No 3
>1g12_A Peptidyl-Lys metalloendopeptidase; zinc cordinate,metalloprotease, hydrolase; HET: MAN; 1.60A {Grifola frondosa} SCOP: d.92.1.12 PDB: 1ge5_A* 1ge6_A* 1ge7_A*
Probab=1.00 E-value=1 Score=16.20 Aligned_cols=48 Identities=27% Similarity=0.323 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEECCCCHH--HHHHHHHHHHH-HCCCCCCCH
Q ss_conf 54137865799999750694230255112--66899865533-013444202
Q 001732 923 KRPTVLGTHLEFLASALDRKISVGCDCAT--WRAYVSGFVTL-IVGCTPTWM 971 (1019)
Q Consensus 923 rR~rVlg~HleFlAs~LdGkIsLgCd~~t--WraYVsgfv~L-mV~~~P~Wi 971 (1019)
+|.+|.+ |++-+++.-+|.+.+.|+|.. |-|||..--.. ++-|..-|-
T Consensus 52 ~~~~V~~-~f~~i~~~~~~~~~~~C~C~~~~~~Ay~~p~~~~~i~~Cp~f~~ 102 (167)
T 1g12_A 52 RHSTVLQ-HYTDMNSNDFSSYSFDCTCTAAGTFAYVYPNRFGTVYLCGAFWK 102 (167)
T ss_dssp HHHHHHH-HHHHHHTSCGGGCEEECCCCCSSCCEECCTTSTTEEEECGGGGG
T ss_pred HHHHHHH-HHHHHHHCCCCCEEEEECCCCCCCEEEEECCCCCEEEECCCHHC
T ss_conf 9999999-99999856688405860168998177884799976898982112
No 4
>3tou_A Glutathione S-transferase protein; GSH binding site, GSH; HET: GSH; 1.75A {Ralstonia solanacearum} PDB: 3tot_A*
Probab=1.00 E-value=1 Score=16.01 Aligned_cols=37 Identities=8% Similarity=0.020 Sum_probs=29.5
Q ss_pred CCCCCHHHHHHH--HHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 014430246888--4334689984304557970779999
Q 001732 468 FMDSFPKLKRWY--RQNEECIASTLTGLVHGTSVHLIVD 504 (1019)
Q Consensus 468 ~iDSFPKLk~WY--~Q~qaCiAStlSgl~~g~pVhqv~d 504 (1019)
..+.||+|+.|| ++.+..+..++....+.+|+.+.-+
T Consensus 178 ~~~~~p~l~~w~~r~~~~p~~~~~~~~~~~~~~~~~~~~ 216 (226)
T 3tou_A 178 WREQHANLAAFYTRIEKRPSFLETQPQAENLYFQSHHHH 216 (226)
T ss_dssp HHHHCHHHHHHHHHHHTSHHHHTTCGGGGGCGGGCC---
T ss_pred HHHCCHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHCCCC
T ss_conf 011196899999998649899973862443445302443
No 5
>3lsz_A Glutathione S-transferase; xenobiotic, biodegradative metabolism, PSI2, NYSGXRC, structural genomics, protein structure initiative; HET: GSH; 1.70A {Rhodobacter sphaeroides}
Probab=1.00 E-value=1 Score=15.95 Aligned_cols=35 Identities=14% Similarity=0.331 Sum_probs=26.6
Q ss_pred CCCCCCHHHHHHH--HHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 1014430246888--4334689984304557970779
Q 001732 467 IFMDSFPKLKRWY--RQNEECIASTLTGLVHGTSVHL 501 (1019)
Q Consensus 467 v~iDSFPKLk~WY--~Q~qaCiAStlSgl~~g~pVhq 501 (1019)
...+.||+|+.|| ++.+..+..++.....++|-|+
T Consensus 187 ~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~~ 223 (225)
T 3lsz_A 187 ALLEPFPAVAAWLDRCQSRPAFRLMMERRAAEGHHHH 223 (225)
T ss_dssp TTTTTCHHHHHHHHHHHTSHHHHHHHHHHHHCCCCCC
T ss_pred CCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCC
T ss_conf 8700091899999999759899999863424677656
No 6
>4dix_A Plectin-related protein; PH domain, IG domain, malonate ION, beta sheet, PH superfold cytosolic, protein binding; 1.70A {Arabidopsis thaliana}
Probab=1.00 E-value=1 Score=15.29 Aligned_cols=45 Identities=20% Similarity=0.259 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 0356442456431030348899887432210343332344899999934422449
Q 001732 572 PRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLSSI 626 (1019)
Q Consensus 572 ~ReLaTGLrDL~DFLPASlatIvSYFSAEVTRGiWKpv~MNGtDWPSPAAnL~~V 626 (1019)
|-|-+.||-+-+|- .++-=.+|-.- --.-|||.||+|++.....|
T Consensus 96 pId~a~GL~~yVEa-------L~rk~~tEFNV---vv~q~nG~d~~s~sihvl~v 140 (230)
T 4dix_A 96 KIDPAAGLGSYVEA-------LVRKHDVDFNV---VVTQMSGEDHTSESIHLFHV 140 (230)
T ss_dssp EBBCCTTHHHHHHH-------HHTTSEEEEEE---EEEEETTEECCCCCEEEEEE
T ss_pred CCCCCCHHHHHHHH-------HHHCCCCCEEE---EEEEECCCCCCCCEEEEEEE
T ss_conf 87777226789999-------86547972789---99987576576631799975
No 7
>4e98_A CUTA1 divalent ION tolerance protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, signaling protein; 2.00A {Cryptosporidium parvum}
Probab=1.00 E-value=1 Score=15.20 Aligned_cols=26 Identities=27% Similarity=0.667 Sum_probs=18.7
Q ss_pred HHHHHHH----HHHHHCCCC--CCCEECCCCCCC
Q ss_conf 1378999----986311122--342002452136
Q 001732 197 MRHLIVE----ACIARNLLD--TSAYLWPGYVNA 224 (1019)
Q Consensus 197 MrHLIVE----aCIaRnLlD--tSaY~WPGYv~~ 224 (1019)
+-+.+|| ||+ |++. +|.|.|-|-+..
T Consensus 52 IA~~LVe~rLAACV--nI~p~i~SiY~WeG~Ie~ 83 (138)
T 4e98_A 52 IAKTLVDEELCACV--SIIPSVRSIYKFKGQVHD 83 (138)
T ss_dssp HHHHHHHTTSCSEE--EEEEEEEEEEEETTEEEE
T ss_pred HHHHHHHCCCEEEE--EECCCEEEEEEECCEEEE
T ss_conf 99999977924699--815992199996892628
No 8
>3gsd_A Divalent-cation tolerance protein CUTA; IDP00456, metal-BIN structural genomics, center for structural genomics of INFE diseases, csgid; HET: EPE; 2.05A {Yersinia pestis CO92} SCOP: d.58.5.2
Probab=1.00 E-value=1 Score=15.05 Aligned_cols=26 Identities=35% Similarity=0.778 Sum_probs=19.0
Q ss_pred HHHHHHH----HHHHHCCCC--CCCEECCCCCCC
Q ss_conf 1378999----986311122--342002452136
Q 001732 197 MRHLIVE----ACIARNLLD--TSAYLWPGYVNA 224 (1019)
Q Consensus 197 MrHLIVE----aCIaRnLlD--tSaY~WPGYv~~ 224 (1019)
+-+.+|| ||. |++. +|.|.|-|-+..
T Consensus 37 iA~~Lve~rLAACV--ni~p~i~S~Y~W~G~ie~ 68 (122)
T 3gsd_A 37 LAAQVLGEKLAACV--TLLPGATSLYYWEGKLEQ 68 (122)
T ss_dssp HHHHHHHTTSCSEE--EEEEEEEEEEEETTEEEE
T ss_pred HHHHHHHCCCEEEE--EECCCEEEEEEECCEEEE
T ss_conf 99999978926799--825994699998999867
No 9
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=14.99 Aligned_cols=21 Identities=29% Similarity=0.746 Sum_probs=0.0
Q ss_pred CCCCCCCCCCHHHHH-HHHHHHH
Q ss_conf 145433443223579-9999984
Q 001732 292 CGASLVRGWSVQENT-ILFIIKL 313 (1019)
Q Consensus 292 CGASL~RGWniQEH~-v~~vvkL 313 (1019)
||..+-- |..|||. -||..+|
T Consensus 15 C~~~i~~-~~~~EH~D~H~A~~L 36 (39)
T 2i5o_A 15 CGSLVPV-WDMPEHMDYHFALEL 36 (39)
T ss_dssp TCCEEEG-GGHHHHHHHHHHHHH
T ss_pred CCCCCCC-CCCCCHHHHHHHHHH
T ss_conf 4683775-321320007999987
No 10
>3a1y_A 50S ribosomal protein P1 (L12P); stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=1.00 E-value=1 Score=14.70 Aligned_cols=15 Identities=40% Similarity=0.720 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHCCCC
Q ss_conf 999999998608776
Q 001732 627 EQQIKKILAATGVDV 641 (1019)
Q Consensus 627 E~eIK~ILAatGVdv 641 (1019)
++.||+||-++||+|
T Consensus 19 ~~~I~~il~aaGvev 33 (58)
T 3a1y_A 19 EENLKAVLQAAGVEP 33 (58)
T ss_dssp HHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHCCCCC
T ss_conf 999999999829971
Done!