Your job contains 1 sequence.
>001733
MSFNKAGTSITSLADSLLESISEITAVCMELESEKFTEIGCYFYRATPVIMELQTTKYTP
ANALEILQSLSKSISLGKDLVAKCKRGDHSMSDAELRSTMLQLLGVIRRMGECLSLIPSS
TFRGQEYAEVAVLSLSKEMLNAHFDIQVLHTKELESQMDLQAMEEQAPLELDLYSVSVEV
SMNSSMNSKSYDMPLPIEYFGSTSLSSQSSDHSTSRSISLPKVAQYIEPLYETFYCPLTK
EIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVALKTTIEEW
KDRNDAERIKVSRAALSLAGSDRMVLEAIKDLQTVCQRKQYNKVQVRNVGVLPLLTKLLE
YKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSSHRPVRHESLLLLLELS
STRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLE
PLMHHLNEGSEEIQMEMASYLGEIVLGHDSKINVPGRAASTLIRMVHSGNSLTRRIAFKA
LMQISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSL
QVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETEA
SYSLLEVINNPHDELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCPTETIHITE
KQAVSAKFLAKLPHQNLTLNLALSARNVVPTILQTINLIQRSGTRTSRYASAYLEGLIGI
LVRFTTTLYEPQILFLARTHNFTSVFTELLMKTSCDEVQKLAAIGLENLSSESINLSKPP
QIKSKKFMKFFSLPKSLSVGSSKKKSVSLCPVHRGACSSQNTFCLIDAKAVDRLLACLYH
ENVEVVEAALSALCTLLDEKVDVDKSVSMLSEVNAIQHVLNVVKEHRQEVLQQKSFWMIE
RFLVKGGNKQASDISQDRLLPATLVSAFHHGDVNTRQMAEKILRHLNKMPNFSASTYTM
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 001733
(1019 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2030462 - symbol:SAUL1 "senescence-associated ... 1170 7.7e-119 1
TAIR|locus:2014584 - symbol:PUB43 "plant U-box 43" specie... 1146 2.7e-116 1
TAIR|locus:2162276 - symbol:PUB15 "Plant U-Box 15" specie... 235 5.7e-16 1
TAIR|locus:2075140 - symbol:PUB13 "plant U-box 13" specie... 154 1.6e-14 4
TAIR|locus:2045334 - symbol:PUB4 "plant U-box 4" species:... 143 3.6e-13 3
TAIR|locus:2010424 - symbol:PUB45 "plant U-box 45" specie... 136 4.5e-10 5
UNIPROTKB|Q5VRH9 - symbol:PUB12 "U-box domain-containing ... 148 1.4e-09 3
TAIR|locus:2158252 - symbol:AT5G67340 species:3702 "Arabi... 120 1.4e-09 2
TAIR|locus:2013688 - symbol:PUB17 "plant U-box 17" specie... 149 1.6e-09 2
TAIR|locus:2195563 - symbol:PUB19 "plant U-box 19" specie... 167 2.8e-09 3
TAIR|locus:2102455 - symbol:AT3G54790 species:3702 "Arabi... 124 7.0e-09 2
UNIPROTKB|Q0IMG9 - symbol:SPL11 "E3 ubiquitin-protein lig... 178 1.8e-08 2
TAIR|locus:2082682 - symbol:PUB14 "plant U-box 14" specie... 146 1.9e-08 2
TAIR|locus:2194564 - symbol:PUB18 "plant U-box 18" specie... 157 2.8e-08 3
UNIPROTKB|Q6EUK7 - symbol:PUB4 "U-box domain-containing p... 126 4.1e-08 2
TAIR|locus:2013990 - symbol:AT1G71020 species:3702 "Arabi... 142 1.4e-07 3
TAIR|locus:2017719 - symbol:AT1G23030 species:3702 "Arabi... 157 1.4e-07 1
TAIR|locus:2181077 - symbol:SAUR21 "SMALL AUXIN UP RNA 21... 134 8.6e-07 2
TAIR|locus:2079706 - symbol:PUB9 "plant U-box 9" species:... 136 9.0e-07 2
TAIR|locus:504954932 - symbol:AT5G57035 species:3702 "Ara... 146 3.2e-06 1
TAIR|locus:2115365 - symbol:AT4G36550 species:3702 "Arabi... 140 5.0e-06 2
TAIR|locus:2098816 - symbol:AT3G61390 species:3702 "Arabi... 140 5.8e-06 1
TAIR|locus:2013850 - symbol:CMPG1 ""CYS, MET, PRO, and GL... 138 9.3e-06 1
TAIR|locus:2047605 - symbol:AT2G19410 species:3702 "Arabi... 140 1.4e-05 1
TAIR|locus:2152049 - symbol:AT5G65920 species:3702 "Arabi... 127 1.9e-05 2
TAIR|locus:2173742 - symbol:AT5G40140 species:3702 "Arabi... 94 2.5e-05 2
TAIR|locus:2146198 - symbol:AT5G18330 species:3702 "Arabi... 110 2.7e-05 3
TAIR|locus:2097390 - symbol:AT3G49810 species:3702 "Arabi... 119 4.6e-05 3
TAIR|locus:2176177 - symbol:AT5G51270 species:3702 "Arabi... 134 6.5e-05 1
TAIR|locus:2039265 - symbol:PUB23 "plant U-box 23" specie... 138 6.6e-05 2
TAIR|locus:2169861 - symbol:AT5G37490 species:3702 "Arabi... 130 7.1e-05 1
RGD|1359296 - symbol:Wdsub1 "WD repeat, sterile alpha mot... 122 8.3e-05 2
TAIR|locus:2012136 - symbol:PUB26 "plant U-box 26" specie... 134 0.00013 3
TAIR|locus:2141226 - symbol:PUB8 "plant U-box 8" species:... 126 0.00015 1
TAIR|locus:2079964 - symbol:PUB22 "plant U-box 22" specie... 127 0.00015 1
TAIR|locus:2117343 - symbol:AT4G25160 species:3702 "Arabi... 130 0.00018 1
TAIR|locus:2090604 - symbol:PUB25 "plant U-box 25" specie... 123 0.00023 2
UNIPROTKB|F1MIZ9 - symbol:KPNA3 "Importin subunit alpha" ... 95 0.00025 2
UNIPROTKB|F1PV58 - symbol:KPNA3 "Importin subunit alpha" ... 95 0.00025 2
TAIR|locus:2050659 - symbol:AT2G45920 species:3702 "Arabi... 124 0.00028 1
TAIR|locus:2151641 - symbol:AT5G61560 species:3702 "Arabi... 128 0.00028 1
MGI|MGI:1100863 - symbol:Kpna3 "karyopherin (importin) al... 95 0.00029 2
RGD|1311339 - symbol:Kpna3 "karyopherin alpha 3" species:... 95 0.00029 2
TAIR|locus:2050669 - symbol:AT2G45910 species:3702 "Arabi... 128 0.00030 1
TAIR|locus:2144846 - symbol:AT5G09800 species:3702 "Arabi... 123 0.00033 2
MGI|MGI:1919387 - symbol:Wdsub1 "WD repeat, SAM and U-box... 124 0.00037 1
TAIR|locus:2032472 - symbol:AT1G24330 species:3702 "Arabi... 126 0.00044 3
TAIR|locus:2198190 - symbol:PUB54 "plant U-box 54" specie... 120 0.00047 1
TAIR|locus:2093974 - symbol:PUB29 "plant U-box 29" specie... 116 0.00049 2
UNIPROTKB|A2AAZ6 - symbol:TRIM39 "E3 ubiquitin-protein li... 117 0.00068 1
ZFIN|ZDB-GENE-030616-541 - symbol:kpna3 "karyopherin (imp... 90 0.00077 2
>TAIR|locus:2030462 [details] [associations]
symbol:SAUL1 "senescence-associated E3 ubiquitin ligase
1" species:3702 "Arabidopsis thaliana" [GO:0000151 "ubiquitin
ligase complex" evidence=IEA] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0016567 "protein ubiquitination" evidence=IEA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0070696 "transmembrane receptor
protein serine/threonine kinase binding" evidence=IPI] [GO:0005515
"protein binding" evidence=IPI] [GO:0010115 "regulation of abscisic
acid biosynthetic process" evidence=IMP] [GO:0010150 "leaf
senescence" evidence=IMP] [GO:0010271 "regulation of chlorophyll
catabolic process" evidence=IMP] [GO:0010380 "regulation of
chlorophyll biosynthetic process" evidence=IMP] [GO:0090359
"negative regulation of abscisic acid biosynthetic process"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000225 InterPro:IPR003613 InterPro:IPR016024
Pfam:PF00514 PROSITE:PS50176 SMART:SM00185 SMART:SM00504
UniPathway:UPA00143 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005886 GO:GO:0005634 GO:GO:0005737 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:AC069251 GO:GO:0010150
GO:GO:0010380 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0010271
GO:GO:0004842 GO:GO:0000151 HSSP:Q8VZ40 eggNOG:NOG276937
HOGENOM:HOG000241783 ProtClustDB:CLSN2682757 EMBL:AY059775
EMBL:AY096753 IPI:IPI00539405 IPI:IPI00886504 RefSeq:NP_564125.2
UniGene:At.21947 ProteinModelPortal:Q9LM76 SMR:Q9LM76 IntAct:Q9LM76
STRING:Q9LM76 PaxDb:Q9LM76 PRIDE:Q9LM76 EnsemblPlants:AT1G20780.1
GeneID:838668 KEGG:ath:AT1G20780 TAIR:At1g20780 InParanoid:Q9LM76
OMA:VARDYNL PhylomeDB:Q9LM76 Genevestigator:Q9LM76 GO:GO:0090359
Uniprot:Q9LM76
Length = 801
Score = 1170 (416.9 bits), Expect = 7.7e-119, P = 7.7e-119
Identities = 270/794 (34%), Positives = 440/794 (55%)
Query: 227 IEPLYETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSG-DIFCPTTGKKLMSR 285
++ +YE F CPLTKE+M DPVT+E+G T+ER AI WF++ SG CP T ++L S
Sbjct: 20 VDHIYEAFICPLTKEVMHDPVTLENGRTFEREAIEKWFKECRDSGRPPSCPLTSQELTST 79
Query: 286 GLNTNVALKTTIEEWKDRNDAERIKVSRAALSLAGSDRMVLEAIKDLQTVCQRKQYNKVQ 345
++ ++AL+ TIEEW+ RNDA ++ ++R +L L ++ +L+A+ ++ +C+ + N+
Sbjct: 80 DVSASIALRNTIEEWRSRNDAAKLDIARQSLFLGNAETDILQALMHVRQICRTIRSNRHG 139
Query: 346 VRNVGVLPLLTKLLEYKDRNVRCAAMELLRQLVVE-DDEGKEMIAETMDXXXXXXXXXXX 404
VRN ++ ++ +L+ VR A++ L Q+VVE DDE K ++AE
Sbjct: 140 VRNSQLIHMIIDMLKSTSHRVRYKALQTL-QVVVEGDDESKAIVAE--GDTVRTLVKFLS 196
Query: 405 HRPV--RHEXXXXXXXXXXXXXXCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRN 462
H P R CEKIGSI G +++L+ + S +V E AD+ L N
Sbjct: 197 HEPSKGREAAVSLLFELSKSEALCEKIGSIHGALILLVGLTSSNSENVSIVEKADRTLEN 256
Query: 463 LERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDSKINVPGRAASTL 522
+ER+ + ++ MA G L+PL+ L EGS E ++ MAS+LGE+ L +D K+ V S+L
Sbjct: 257 MERSEEIVRQMASYGRLQPLLGKLLEGSPETKLSMASFLGELPLNNDVKVLVAQTVGSSL 316
Query: 523 IRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKXX 582
+ ++ SG+ R A KAL +ISS S K+L+ GI+ + +++F +N P+ K
Sbjct: 317 VDLMRSGDMPQREAALKALNKISSFEGSAKVLISKGILPPLIKDLFYVGPNNLPIRLKEV 376
Query: 583 XXXXXXXXXXSGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLT 642
G + T+VS+ V N+++++ N+ P + L+ +L LT
Sbjct: 377 SATILANIVNIGYDFDKA-------TLVSENRVENLLHLISNTGP-AIQCKLLEVLVGLT 428
Query: 643 KSPKPMATIVSVIKETEASYSLLEVIN-NPHDELAVAAIKLLTTLSPYLGHTLVERLCKT 701
PK + +V IK + A SL++ I +D+L +A+IKLL LSP++ L + LC T
Sbjct: 429 SCPKTVPKVVYAIKTSGAIISLVQFIEVRENDDLRLASIKLLHNLSPFMSEELAKALCGT 488
Query: 702 RGQPENLIQCPTETIHITEKQAVSAKFLAKLPHQNLTLNLALSARNVVPTILQTINLIQR 761
GQ +L+ +E ITE+QA +A LA+LP ++L L + I+ + I++
Sbjct: 489 AGQLGSLVAIISEKTPITEEQAAAAGLLAELPDRDLGLTQEMLEVGAFEKIISKVFGIRQ 548
Query: 762 SGTRTSRYASAYLEGLIGILVRFTTTLY-EPQILFLARTHNFTSVFTELLMKTSCDEVQK 820
+ R+ + +LEGL+ IL R T E + + R H+ S+F LL D +Q
Sbjct: 549 GDIKGMRFVNPFLEGLVRILARITFVFNKEARAINFCREHDVASLFLHLLQSNGQDNIQM 608
Query: 821 LAAIGXXXXXXXXXXXXKPPQIKSKKFMKFFXXXXXXXXXXXXXXXXXXCPVHRGACSSQ 880
++A+ + P + C +H+G CS +
Sbjct: 609 VSAMALENLSLESIKLTRMPDPPPVNYC-----GSIFSCVRKPHVVNGLCKIHQGICSLR 663
Query: 881 NTFCLIDAKAVDRLLACLYHENVEVVEAALSALCTLLDEKVDVDKSVSMLSEVNAIQHVL 940
TFCL++ AV++L+A L HENV+VVEAAL+AL +LL++ +DV+K V +L E + I+H+L
Sbjct: 664 ETFCLVEGGAVEKLVALLDHENVKVVEAALAALSSLLEDGLDVEKGVKILDEADGIRHIL 723
Query: 941 NVVKEHRQEVLQQKSFWMIERFLVKGGNKQASDISQDRLLPATLVSAFHHGDVNTRQMAE 1000
NV++E+R E L +++ WM+ER L A ++++++ L A LV AF + D TRQ+AE
Sbjct: 724 NVLRENRTERLTRRAVWMVERILRI--EDIAREVAEEQSLSAALVDAFQNADFRTRQIAE 781
Query: 1001 KILRHLNKMPNFSA 1014
L+H++K+PNFS+
Sbjct: 782 NALKHIDKIPNFSS 795
>TAIR|locus:2014584 [details] [associations]
symbol:PUB43 "plant U-box 43" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IDA] InterPro:IPR000225 InterPro:IPR003613
InterPro:IPR016024 PROSITE:PS50176 SMART:SM00185 SMART:SM00504
UniPathway:UPA00143 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005886 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
Gene3D:3.30.40.10 InterPro:IPR013083 EMBL:AC012394 GO:GO:0004842
GO:GO:0000151 UniGene:At.16778 UniGene:At.66969 HSSP:Q8VZ40
EMBL:AK226857 IPI:IPI00516849 PIR:E96791 RefSeq:NP_001077833.1
RefSeq:NP_177765.1 ProteinModelPortal:Q9SFX2 SMR:Q9SFX2
PaxDb:Q9SFX2 PRIDE:Q9SFX2 EnsemblPlants:AT1G76390.1
EnsemblPlants:AT1G76390.2 GeneID:843971 KEGG:ath:AT1G76390
TAIR:At1g76390 eggNOG:NOG276937 HOGENOM:HOG000241783
InParanoid:Q9SFX2 OMA:LTKQVMH PhylomeDB:Q9SFX2
ProtClustDB:CLSN2682757 Genevestigator:Q9SFX2 Uniprot:Q9SFX2
Length = 811
Score = 1146 (408.5 bits), Expect = 2.7e-116, P = 2.7e-116
Identities = 268/792 (33%), Positives = 432/792 (54%)
Query: 227 IEPLYETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGD-IFCPTTGKKLMSR 285
I+ +YE F CPLTK++M +PVT+E+G T+ER AI WF++ +G + CP T K+L
Sbjct: 22 IDNIYEAFICPLTKQVMHNPVTLENGQTFEREAIEKWFQECRENGQPLSCPITSKELSIT 81
Query: 286 GLNTNVALKTTIEEWKDRNDAERIKVSRAALSLAGSDRMVLEAIKDLQTVCQRKQYNKVQ 345
L+ ++AL+ TIEEW+ RNDA ++ ++R +L L ++ +L A+K+++ +C+ + + +
Sbjct: 82 DLSPSIALRNTIEEWRARNDALKLDIARQSLYLGNAETNILLALKNVREICRNIRKIRQR 141
Query: 346 VRNVGVLPLLTKLLEYKDRNVRCAAMELLRQLVVE-DDEGKEMIAETMDXXXXXXXXXXX 404
V N ++ L+T +L+ VRC A++ L Q+VVE D+E K ++AE
Sbjct: 142 VCNPQLVRLITDMLKSSSHEVRCKALQTL-QVVVEGDEESKAIVAEGDTVRTIVKFLSQE 200
Query: 405 HRPVRHEXXXXXXXXXXXXXXCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLE 464
R CEKIGSI G I++L+ + S +V E AD+ L NLE
Sbjct: 201 PSKGREAAVSVLFELSKSEALCEKIGSIHGAIILLVGLTSSKSENVSTVEKADKTLTNLE 260
Query: 465 RNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDSKINVPGRAASTLIR 524
R+ +N++ MA NG L+PL+ L EGS E ++ MA YLG + L +D K+ V S+LI
Sbjct: 261 RSEENVRQMAINGRLQPLLAKLLEGSPETKVSMAFYLGVLALNNDVKVIVAQTVGSSLID 320
Query: 525 MVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKXXXX 584
++ + + R A AL ISS S K+L+ GI+ + +++F + P+ K
Sbjct: 321 LMRTRDMSQREAALGALNNISSFEGSAKLLINTGILPPLIKDLFYVGPNQLPIRLKEVSA 380
Query: 585 XXXXXXXXSGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKS 644
G + + V H T+VS+ +V N++ + N+ P E+ L+ +L LT
Sbjct: 381 TILANIVNIGYDFDKVPVGPHHQTLVSEEIVENLLQLTSNTGP-EIQGKLLAVLVGLTSC 439
Query: 645 PKPMATIVSVIKETEASYSLLEVIN-NPHDELAVAAIKLLTTLSPYLGHTLVERLCKTRG 703
P + +VS I+ + A SL++ + + +D+L +A+IKLL +SP++ L L T G
Sbjct: 440 PNSVINVVSAIRNSAAIISLVQFVEIHENDDLRLASIKLLHNISPHMSEELANALRSTVG 499
Query: 704 QPENLIQCPTE-TIHITEKQAVSAKFLAKLPHQNLTLNLALSARNVVPTILQTINLIQRS 762
Q +L+ +E T ITE+QA +A LA+LP ++L L + L I+ I I++
Sbjct: 500 QLGSLVSIISENTPTITEEQAAAAGLLAELPERDLVLTMRLLREGAFEKIISKIVGIRQG 559
Query: 763 GTRTSRYASAYLEGLIGILVRFTTTLY-EPQILFLARTHNFTSVFTELLMKTSCDEVQKL 821
R R+ +LEGL+ IL R T L E N S+F +LL S D +Q+
Sbjct: 560 EIRGIRFERTFLEGLVSILARITFALTKETDATLFCCEKNLPSLFLDLLQSNSQDNIQRA 619
Query: 822 AAIGXXXXXXXXXXXXKPPQIKSKKFMKFFXXXXXXXXXXXXXXXXXXCPVHRGACSSQN 881
+A K P++ + C +H+G CS +
Sbjct: 620 SATALENLSLESKNLTKIPELPPPTYC-----VSIFSCLSKPPVVLGICKIHQGICSVRE 674
Query: 882 TFCLIDAKAVDRLLACLYHENVEVVEAALSALCTLLDEKVDVDKSVSMLSEVNAIQHVLN 941
+FCL++ +AVD+L+ L HEN +VV AL+AL TLL++ +DV + V ++ E + I +LN
Sbjct: 675 SFCLVEGQAVDKLVDLLDHENDKVVGPALAALSTLLEDGLDVVQGVRLIDEADGITPILN 734
Query: 942 VVKEHRQEVLQQKSFWMIERFLVKGGNKQASDISQDRLLPATLVSAFHHGDVNTRQMAEK 1001
V+ E+R E L+ ++ WM+ER L + A ++ +++ + A LV AF + D TRQ+AEK
Sbjct: 735 VLLENRTENLRIRAVWMVERILRI--EEIAREVGEEQNVTAALVDAFQNADFRTRQIAEK 792
Query: 1002 ILRHLNKMPNFS 1013
LRH++K+PNFS
Sbjct: 793 ALRHIDKIPNFS 804
>TAIR|locus:2162276 [details] [associations]
symbol:PUB15 "Plant U-Box 15" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0006944 "cellular membrane
fusion" evidence=RCA] [GO:0030048 "actin filament-based movement"
evidence=RCA] [GO:0048610 "cellular process involved in
reproduction" evidence=RCA] [GO:0048868 "pollen tube development"
evidence=RCA] InterPro:IPR000225 InterPro:IPR003613
InterPro:IPR016024 Pfam:PF00514 Pfam:PF04564 PROSITE:PS50176
SMART:SM00185 SMART:SM00504 UniPathway:UPA00143 EMBL:CP002688
GenomeReviews:BA000015_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 EMBL:AB016888 GO:GO:0000151 HOGENOM:HOG000238412
HSSP:Q8VZ40 EMBL:AK175585 IPI:IPI00547462 RefSeq:NP_199049.2
UniGene:At.51075 ProteinModelPortal:Q681N2 SMR:Q681N2 PaxDb:Q681N2
PRIDE:Q681N2 EnsemblPlants:AT5G42340.1 GeneID:834240
KEGG:ath:AT5G42340 TAIR:At5g42340 eggNOG:NOG263115
InParanoid:Q681N2 OMA:CCHDGSK PhylomeDB:Q681N2
ProtClustDB:CLSN2681658 Genevestigator:Q681N2 Uniprot:Q681N2
Length = 660
Score = 235 (87.8 bits), Expect = 5.7e-16, P = 5.7e-16
Identities = 84/350 (24%), Positives = 152/350 (43%)
Query: 234 FYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVAL 293
F CP+T EIM DPV I +G TYE+ +I WF+ +G CP T ++L L N AL
Sbjct: 294 FLCPITLEIMLDPVIIATGQTYEKESIQKWFD----AGHKTCPKTRQELDHLSLAPNFAL 349
Query: 294 KTTIEEWKDRN-----------DAERIKVSRAALSLAGSDRMVLE----AIKDLQTVCQR 338
K I +W ++N D++ + +L + LE ++K ++ + +
Sbjct: 350 KNLIMQWCEKNNFKIPEKEVSPDSQNEQKDEVSLLVEALSSSQLEEQRRSVKQMRLLARE 409
Query: 339 KQYNKVQVRNVGVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDXXXXX 398
N+V + N G +PLL +LL Y D ++ A+ L L + D+ K++I+
Sbjct: 410 NPENRVLIANAGAIPLLVQLLSYPDSGIQENAVTTLLNLSI-DEVNKKLISNEGAIPNII 468
Query: 399 XXXXXXHRPVRHEXXXXXXXXXXXXXXCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQ 458
+R R IG + GI L+ + ++ + A
Sbjct: 469 EILENGNREARENSAAALFSLSMLDENKVTIG-LSNGIPPLVDLLQHGTLR--GKKDALT 525
Query: 459 ILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDSKINVPGRA 518
L NL N N + G+++PL++ L + + + E S L ++ H G+
Sbjct: 526 ALFNLSLNSANKGRAIDAGIVQPLLNLLKDKNLGMIDEALSIL-LLLASHPEGRQAIGQL 584
Query: 519 A--STLIRMVHSGNSLTRRIAFKALMQISSHHPSCKIL-VEAGIVQVMAE 565
+ TL+ + G + A L+++ S++ S + ++ G+ + + E
Sbjct: 585 SFIETLVEFIRQGTPKNKECATSVLLELGSNNSSFILAALQFGVYEYLVE 634
>TAIR|locus:2075140 [details] [associations]
symbol:PUB13 "plant U-box 13" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0016567
"protein ubiquitination" evidence=IEA;IDA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0070696 "transmembrane receptor protein serine/threonine kinase
binding" evidence=IPI] [GO:0042742 "defense response to bacterium"
evidence=IGI] [GO:0000902 "cell morphogenesis" evidence=RCA]
[GO:0006487 "protein N-linked glycosylation" evidence=RCA]
[GO:0006499 "N-terminal protein myristoylation" evidence=RCA]
[GO:0016049 "cell growth" evidence=RCA] [GO:0032880 "regulation of
protein localization" evidence=RCA] [GO:0046777 "protein
autophosphorylation" evidence=RCA] [GO:0048193 "Golgi vesicle
transport" evidence=RCA] [GO:0048767 "root hair elongation"
evidence=RCA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000225 InterPro:IPR003613 InterPro:IPR016024
Pfam:PF00514 Pfam:PF04564 PROSITE:PS50176 SMART:SM00185
SMART:SM00504 UniPathway:UPA00143 GO:GO:0005829 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0042742 EMBL:AL133314
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151
HOGENOM:HOG000238412 HSSP:Q8VZ40 EMBL:AY042791 EMBL:AY128813
IPI:IPI00531350 PIR:T45588 RefSeq:NP_190235.1 UniGene:At.23070
ProteinModelPortal:Q9SNC6 SMR:Q9SNC6 STRING:Q9SNC6 PaxDb:Q9SNC6
PRIDE:Q9SNC6 EnsemblPlants:AT3G46510.1 GeneID:823804
KEGG:ath:AT3G46510 TAIR:At3g46510 eggNOG:NOG269633
InParanoid:Q9SNC6 OMA:DSRIQEH PhylomeDB:Q9SNC6
ProtClustDB:CLSN2684834 Genevestigator:Q9SNC6 Uniprot:Q9SNC6
Length = 660
Score = 154 (59.3 bits), Expect = 1.6e-14, Sum P(4) = 1.6e-14
Identities = 33/84 (39%), Positives = 45/84 (53%)
Query: 224 AQYIEPLYETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLM 283
+Q I + + F CP++ E+M DPV + SG TYER I W E G CP T + L
Sbjct: 250 SQKIPVIPDDFRCPISLEMMRDPVIVSSGQTYERTCIEKWIE----GGHSTCPKTQQALT 305
Query: 284 SRGLNTNVALKTTIEEWKDRNDAE 307
S L N L++ I +W + ND E
Sbjct: 306 STTLTPNYVLRSLIAQWCEANDIE 329
Score = 71 (30.1 bits), Expect = 1.6e-14, Sum P(4) = 1.6e-14
Identities = 41/145 (28%), Positives = 68/145 (46%)
Query: 430 GSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEG 489
G+IPG + VL K S++ A E A L +L +N + G + PL+ LNEG
Sbjct: 435 GAIPGIVQVL---K-KGSME--ARENAAATLFSLSVIDENKVTIGALGAIPPLVVLLNEG 488
Query: 490 SEEIQMEMASYLGEIVL--GHDSKINVPGRAASTLIRMV-HSGNSLTRRIAFKALMQISS 546
++ + + A+ L + + G+ K G TL R++ G+ + A++ I S
Sbjct: 489 TQRGKKDAATALFNLCIYQGNKGKAIRAG-VIPTLTRLLTEPGSGMVDEAL--AILAILS 545
Query: 547 HHPSCKILV-EAGIVQVMAEEMFIR 570
HP K ++ + V + E FIR
Sbjct: 546 SHPEGKAIIGSSDAVPSLVE--FIR 568
Score = 68 (29.0 bits), Expect = 1.6e-14, Sum P(4) = 1.6e-14
Identities = 37/167 (22%), Positives = 72/167 (43%)
Query: 12 SLADSLLESISEITAVC-MELESEKFT-EIGCYFYRATPVIMEL-QTTKYTPANALEILQ 68
S A SL++ ++EI A+ + +K + P+ E+ ++ + + L+ L
Sbjct: 7 SAAQSLIDVVNEIAAISDYRITVKKLCYNLARRLKLLVPMFEEIRESNEPISEDTLKTLM 66
Query: 69 SLSKSISLGKDLVAKCKRGDHSMSDAELRSTMLQLLGVIRRMGECLSLIPSSTFR-GQEY 127
+L +++ KD + C +G E +L+ V ++ + LS IP E
Sbjct: 67 NLKEAMCSAKDYLKFCSQGSKIYLVMEREQVTSKLMEVSVKLEQSLSQIPYEELDISDEV 126
Query: 128 AEVAVLSLSKEMLNAHFDIQVLHTKELESQMDLQAMEEQAPLELDLY 174
E L LS + A + V + E DLQ++ ++ ++D Y
Sbjct: 127 REQVELVLS-QFRRAKGRVDVSDDELYE---DLQSLCNKSS-DVDAY 168
Score = 67 (28.6 bits), Expect = 1.6e-14, Sum P(4) = 1.6e-14
Identities = 21/81 (25%), Positives = 39/81 (48%)
Query: 306 AERIKVSRAALSLA-GSDRMVLEAIKDLQTVCQRKQYNKVQVRNVGVLPLLTKLLEYKDR 364
AE K+ LA G+ A +++ + +R N+V + G +PLL LL D
Sbjct: 349 AEANKIEDLMWRLAYGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDS 408
Query: 365 NVRCAAMELLRQL-VVEDDEG 384
++ ++ L L + E+++G
Sbjct: 409 RIQEHSVTALLNLSICENNKG 429
Score = 59 (25.8 bits), Expect = 2.6e-13, Sum P(4) = 2.6e-13
Identities = 20/105 (19%), Positives = 47/105 (44%)
Query: 460 LRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDSKINVPGRAA 519
L NL +N + G + ++ L +GS E + A+ L + + ++K+ + A
Sbjct: 418 LLNLSICENNKGAIVSAGAIPGIVQVLKKGSMEARENAAATLFSLSVIDENKVTIGALGA 477
Query: 520 -STLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIVQVM 563
L+ +++ G ++ A AL + + + + AG++ +
Sbjct: 478 IPPLVVLLNEGTQRGKKDAATALFNLCIYQGNKGKAIRAGVIPTL 522
Score = 58 (25.5 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 21/72 (29%), Positives = 34/72 (47%)
Query: 320 GSDRMVLEAIKDLQTVCQRKQYNKVQVRNVGVLPLLTKLLEYKDRNVRCAAMELLRQLVV 379
G+ R +A L +C Q NK + GV+P LT+LL + A+ +L ++
Sbjct: 488 GTQRGKKDAATALFNLCIY-QGNKGKAIRAGVIPTLTRLLTEPGSGMVDEALAILA-ILS 545
Query: 380 EDDEGKEMIAET 391
EGK +I +
Sbjct: 546 SHPEGKAIIGSS 557
Score = 54 (24.1 bits), Expect = 3.5e-10, Sum P(3) = 3.5e-10
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 342 NKVQVRNVGVLPLLTKLL-EYKDRNVRCAAMELLRQLVVEDDEGKEMIA 389
NKV + +G +P L LL E R + AA L + + ++GK + A
Sbjct: 468 NKVTIGALGAIPPLVVLLNEGTQRGKKDAATALFNLCIYQGNKGKAIRA 516
Score = 54 (24.1 bits), Expect = 3.5e-10, Sum P(3) = 3.5e-10
Identities = 22/91 (24%), Positives = 40/91 (43%)
Query: 456 ADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDSK-INV 514
A +I +RN DN +AE G + L+ L+ IQ + L + + ++K V
Sbjct: 373 AGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRIQEHSVTALLNLSICENNKGAIV 432
Query: 515 PGRAASTLIRMVHSGNSLTRRIAFKALMQIS 545
A +++++ G+ R A L +S
Sbjct: 433 SAGAIPGIVQVLKKGSMEARENAAATLFSLS 463
>TAIR|locus:2045334 [details] [associations]
symbol:PUB4 "plant U-box 4" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005871 "kinesin complex"
evidence=IEA] [GO:0016567 "protein ubiquitination" evidence=IEA]
[GO:0019894 "kinesin binding" evidence=IEA] InterPro:IPR000225
InterPro:IPR003613 InterPro:IPR016024 Pfam:PF04564 PROSITE:PS50176
SMART:SM00185 SMART:SM00504 EMBL:CP002685 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151 IPI:IPI00532127
RefSeq:NP_179895.6 UniGene:At.39339 ProteinModelPortal:F4ILG6
SMR:F4ILG6 PRIDE:F4ILG6 EnsemblPlants:AT2G23140.1 GeneID:816846
KEGG:ath:AT2G23140 OMA:WRRPSER Uniprot:F4ILG6
Length = 829
Score = 143 (55.4 bits), Expect = 3.6e-13, Sum P(3) = 3.6e-13
Identities = 41/140 (29%), Positives = 73/140 (52%)
Query: 429 IGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNE 488
IG+ G I++L+ + S D E A L NL N +N K +A+ G +EPL+H L
Sbjct: 582 IGN-SGAIVLLVELLY--STDSATQENAVTALLNLSINDNNKKAIADAGAIEPLIHVLEN 638
Query: 489 GSEEIQMEMASYLGEIVLGHDSKINV-PGRAASTLIRMVHSGNSLTRRIAFKALMQISSH 547
GS E + A+ L + + ++KI + A L+ ++ +G ++ A AL +S H
Sbjct: 639 GSSEAKENSAATLFSLSVIEENKIKIGQSGAIGPLVDLLGNGTPRGKKDAATALFNLSIH 698
Query: 548 HPSCKILVEAGIVQVMAEEM 567
+ ++V++G V+ + + M
Sbjct: 699 QENKAMIVQSGAVRYLIDLM 718
Score = 130 (50.8 bits), Expect = 3.6e-13, Sum P(3) = 3.6e-13
Identities = 28/74 (37%), Positives = 38/74 (51%)
Query: 234 FYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVAL 293
F+CPL+ E+M DPV + SG TYE+ I W + G CP T + L L N +
Sbjct: 237 FFCPLSLEVMTDPVIVSSGQTYEKAFIKRWIDL----GLKVCPKTRQTLTHTTLIPNYTV 292
Query: 294 KTTIEEWKDRNDAE 307
K I W + ND +
Sbjct: 293 KALIANWCETNDVK 306
Score = 85 (35.0 bits), Expect = 2.9e-07, Sum P(3) = 2.9e-07
Identities = 56/281 (19%), Positives = 113/281 (40%)
Query: 284 SRGLNTNVALKTTIEEWKDRNDAE-RIKVSRAALSLAGSDRMVLEAIKDLQTVCQRKQYN 342
S L + + + E +D ++ E ++K L + D +A +L+ + + N
Sbjct: 520 SERLGSRIVSAPSNETRRDLSEVETQVKKLVEELKSSSLDTQ-RQATAELRLLAKHNMDN 578
Query: 343 KVQVRNVGVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDXXXXXXXXX 402
++ + N G + LL +LL D + A+ L L + D+ K+ IA+
Sbjct: 579 RIVIGNSGAIVLLVELLYSTDSATQENAVTALLNLSINDNN-KKAIADAGAIEPLIHVLE 637
Query: 403 XXHRPVRHEXXXXXXXXXXXXXXCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRN 462
+ KIG G I L+ N + + A L N
Sbjct: 638 NGSSEAKENSAATLFSLSVIEENKIKIGQ-SGAIGPLVDLLGNGTPR--GKKDAATALFN 694
Query: 463 LERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMA--SYLGEIVLGHDSKINVPGRAAS 520
L + +N + ++G + L+ ++ + + +A + L I G ++ I G
Sbjct: 695 LSIHQENKAMIVQSGAVRYLIDLMDPAAGMVDKAVAVLANLATIPEGRNA-IGQEG-GIP 752
Query: 521 TLIRMVHSGNSLTRRIAFKALMQISSHHPS-CKILVEAGIV 560
L+ +V G++ + A AL+Q+S++ C ++++ G V
Sbjct: 753 LLVEVVELGSARGKENAAAALLQLSTNSGRFCNMVLQEGAV 793
Score = 37 (18.1 bits), Expect = 3.6e-13, Sum P(3) = 3.6e-13
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 88 DHSMSDAELRSTMLQLLGVIRRMGECLSLI 117
+ S ++AE+ + QL+ ++ RM E L LI
Sbjct: 195 EQSENNAEVEF-LDQLIVIVNRMHERLLLI 223
>TAIR|locus:2010424 [details] [associations]
symbol:PUB45 "plant U-box 45" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005871 "kinesin complex"
evidence=IEA] [GO:0016567 "protein ubiquitination"
evidence=IEA;IDA] [GO:0019894 "kinesin binding" evidence=IEA]
[GO:0070696 "transmembrane receptor protein serine/threonine kinase
binding" evidence=IPI] InterPro:IPR000225 InterPro:IPR003613
InterPro:IPR016024 Pfam:PF04564 PROSITE:PS50176 SMART:SM00504
UniPathway:UPA00143 EMBL:CP002684 GenomeReviews:CT485782_GR
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:AC069471
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151
HSSP:Q8VZ40 EMBL:AY094469 EMBL:BT002721 EMBL:AK230080
IPI:IPI00517206 PIR:D86404 RefSeq:NP_174112.1 UniGene:At.22435
ProteinModelPortal:Q9C7G1 SMR:Q9C7G1 PRIDE:Q9C7G1
EnsemblPlants:AT1G27910.1 GeneID:839684 KEGG:ath:AT1G27910
TAIR:At1g27910 eggNOG:NOG251146 HOGENOM:HOG000082565
InParanoid:Q9C7G1 OMA:SENMSIP PhylomeDB:Q9C7G1
ProtClustDB:CLSN2679347 Genevestigator:Q9C7G1 Uniprot:Q9C7G1
Length = 768
Score = 136 (52.9 bits), Expect = 4.5e-10, Sum P(5) = 4.5e-10
Identities = 38/123 (30%), Positives = 58/123 (47%)
Query: 232 ETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNV 291
E CP++ ++M DPV I SG TYER I WF + G CP T ++L L N
Sbjct: 281 EELRCPISLQLMYDPVIIASGQTYERICIEKWF----SDGHNTCPKTHQQLSHLCLTPNY 336
Query: 292 ALKTTIEEWKDRNDAERIKVSRAALSLAGSDRMVLEAIKDLQTVCQRKQYNKVQVRNVGV 351
+K I W ++N + +L L R+ L + T K+ ++++V V
Sbjct: 337 CVKALISSWCEQNGVQVPDGPPESLDL-NYWRLALSVSESTDTR-SAKRVGSCKLKDVKV 394
Query: 352 LPL 354
+PL
Sbjct: 395 VPL 397
Score = 75 (31.5 bits), Expect = 4.5e-10, Sum P(5) = 4.5e-10
Identities = 32/123 (26%), Positives = 58/123 (47%)
Query: 881 NTFCLIDAKAVDRLLACLYHENVEVVEAALSALCTLLDEKVDVDKSVSMLSEVNAIQHVL 940
N CL+ A V+ L + + E +L+ L L+ + D+ VS S V+ + +L
Sbjct: 583 NIPCLLSADLVNALQSLTISDEQRWTEKSLAVLLNLVLNEAGKDEMVSAPSLVSNLCTIL 642
Query: 941 NVVKEHRQEVLQQKSFWMIERFLVKGGNKQASDISQDRLLPATLVSAFHHGDVNTRQMAE 1000
+ + + QE Q S +I L + + Q+ ++P+ LVS +G R+ A+
Sbjct: 643 DTGEPNEQE--QAVSLLLI---LCNHSEICSEMVLQEGVIPS-LVSISVNGTQRGRERAQ 696
Query: 1001 KIL 1003
K+L
Sbjct: 697 KLL 699
Score = 56 (24.8 bits), Expect = 4.5e-10, Sum P(5) = 4.5e-10
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 664 LLEVINNPHDELAVAAIKL-LTTLS---PYLGHTLVERLCKTRGQPENLIQCPTETIH 717
L E++ NPH +V AI L L+ L P +G +L E +QC + +H
Sbjct: 515 LEEMLCNPHSHGSVTAIYLNLSCLEEAKPVIGSSLAVPFMVNLLWTETEVQCKVDALH 572
Score = 51 (23.0 bits), Expect = 4.5e-10, Sum P(5) = 4.5e-10
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 1 MSFNKAGTSITS----LADSLLESI-SEITAVCMELESEKFT 37
+ F KA +S+T + D + +SI S++ + MELE+ +F+
Sbjct: 88 LKFEKAKSSLTDSLRRVEDIVQQSIGSQLLEILMELENTEFS 129
Score = 41 (19.5 bits), Expect = 4.5e-10, Sum P(5) = 4.5e-10
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 455 IADQILRNLERNPDNIKC-MAENGLLEPLMHHLNEGSEE 492
+ +QI R L ++ + + M ENG +E L+ L E
Sbjct: 442 VVEQI-RVLLKDDEEARILMGENGCVEALLQFLGSALNE 479
>UNIPROTKB|Q5VRH9 [details] [associations]
symbol:PUB12 "U-box domain-containing protein 12"
species:39947 "Oryza sativa Japonica Group" [GO:0004842
"ubiquitin-protein ligase activity" evidence=IDA] [GO:0016567
"protein ubiquitination" evidence=IDA] InterPro:IPR000225
InterPro:IPR003613 InterPro:IPR016024 Pfam:PF00514 Pfam:PF04564
PROSITE:PS50176 SMART:SM00185 SMART:SM00504 UniPathway:UPA00143
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:AP008212
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151
HOGENOM:HOG000238412 EMBL:AP002842 EMBL:AK067611 EMBL:AK071080
RefSeq:NP_001056535.2 UniGene:Os.11259 ProteinModelPortal:Q5VRH9
EnsemblPlants:LOC_Os06g01304.1 GeneID:4339839 KEGG:osa:4339839
Gramene:Q5VRH9 eggNOG:NOG242845 OMA:KTGSPRN ProtClustDB:CLSN2695872
Uniprot:Q5VRH9
Length = 611
Score = 148 (57.2 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 30/76 (39%), Positives = 41/76 (53%)
Query: 232 ETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNV 291
+ F CP++ E+M DPV + SG TYER+ I W + SG CP T + L L N
Sbjct: 230 DEFRCPISLELMQDPVIVSSGQTYERSCIQKWLD----SGHKTCPKTQQPLSHTSLTPNF 285
Query: 292 ALKTTIEEWKDRNDAE 307
LK+ I +W + N E
Sbjct: 286 VLKSLISQWCEANGIE 301
Score = 69 (29.3 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 22/91 (24%), Positives = 43/91 (47%)
Query: 456 ADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDSKIN-V 514
A +I +RN +N C+AE G + L++ L+ Q + L + + ++K + V
Sbjct: 344 AGEIRLLAKRNVNNRICIAEAGAIPLLVNLLSSSDPRTQEHAVTALLNLSIHENNKASIV 403
Query: 515 PGRAASTLIRMVHSGNSLTRRIAFKALMQIS 545
A ++ ++ +G+ TR A L +S
Sbjct: 404 DSHAIPKIVEVLKTGSMETRENAAATLFSLS 434
Score = 52 (23.4 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 19/67 (28%), Positives = 31/67 (46%)
Query: 70 LSKSISLGKDLVAKCKRGDHSMSDAELRSTML--QLLGVIRRMGECLSLIPSSTFR-GQE 126
L+ ++ +DL+ K + G S D +R + GV R++ L +P +TF QE
Sbjct: 52 LADALGAARDLLRKTRDG--SKIDQAMRGDAFLDEFAGVNRQIHLALDALPYNTFHMPQE 109
Query: 127 YAEVAVL 133
E L
Sbjct: 110 VQEQVAL 116
Score = 51 (23.0 bits), Expect = 1.6e-07, Sum P(4) = 1.6e-07
Identities = 25/119 (21%), Positives = 52/119 (43%)
Query: 428 KIGSIPGGILVLITFKFNWSIDVFAAEIAD--QILRNLERNPDNIKCMAENGLLEPLMHH 485
K+ ++ GI++ + N+ +D I + +L L NP+ +A + + PL+
Sbjct: 481 KVRAVKAGIVIHL---MNFLVDPTGGMIDEALSLLSILAGNPEGKIVIARSEPIPPLVEV 537
Query: 486 LNEGSEEIQMEMASYLGEIVLGHDSKINVPGRAAST---LIRMVHSGNSLTRRIAFKAL 541
+ GS + A+ L ++ D++ + +AA L + +G +R A L
Sbjct: 538 IKTGSPRNRENAAAILW-LLCSADTEQTLAAKAAGVEDALKELSETGTDRAKRKASSIL 595
Score = 50 (22.7 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 17/69 (24%), Positives = 32/69 (46%)
Query: 881 NTFCLIDAKAVDRLLACLYHENVEVVEAALSALCTLLDEKVDVDKSVSMLSEVNAIQHVL 940
N C+ +A A+ L+ L + E A++AL L + + S++ +AI ++
Sbjct: 357 NRICIAEAGAIPLLVNLLSSSDPRTQEHAVTALLNL---SIHENNKASIVDS-HAIPKIV 412
Query: 941 NVVKEHRQE 949
V+K E
Sbjct: 413 EVLKTGSME 421
Score = 45 (20.9 bits), Expect = 3.6e-07, Sum P(3) = 3.6e-07
Identities = 15/63 (23%), Positives = 32/63 (50%)
Query: 881 NTFCLIDAKAVDRLLACLYHENVEVVEAALSALCTLLDEKVDVDKSVSMLSEVNAIQHVL 940
N ++D+ A+ +++ L ++E E +A TL V VD++ + AI ++
Sbjct: 398 NKASIVDSHAIPKIVEVLKTGSMETRE---NAAATLFSLSV-VDENKVTIGAAGAIPPLI 453
Query: 941 NVV 943
N++
Sbjct: 454 NLL 456
Score = 40 (19.1 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 26/107 (24%), Positives = 50/107 (46%)
Query: 454 EIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDSKIN 513
E A L +L +N + G + PL++ L +GS + + A+ + + + +K+
Sbjct: 424 ENAAATLFSLSVVDENKVTIGAAGAIPPLINLLCDGSPRGKKDAATAIFNLCIYQGNKV- 482
Query: 514 VPGRAASTLIRMVHSGNSL---TRRIAFKAL--MQISSHHPSCKILV 555
RA I ++H N L T + +AL + I + +P KI++
Sbjct: 483 ---RAVKAGI-VIHLMNFLVDPTGGMIDEALSLLSILAGNPEGKIVI 525
Score = 37 (18.1 bits), Expect = 1.6e-07, Sum P(4) = 1.6e-07
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 342 NKVQVRNVGVLPLLTKLL-EYKDRNVRCAAMELLRQLVVEDDE 383
NKV + G +P L LL + R + AA + + + ++
Sbjct: 439 NKVTIGAAGAIPPLINLLCDGSPRGKKDAATAIFNLCIYQGNK 481
>TAIR|locus:2158252 [details] [associations]
symbol:AT5G67340 species:3702 "Arabidopsis thaliana"
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
[GO:0016567 "protein ubiquitination" evidence=IEA] [GO:0000165
"MAPK cascade" evidence=RCA] [GO:0006499 "N-terminal protein
myristoylation" evidence=RCA] [GO:0006612 "protein targeting to
membrane" evidence=RCA] [GO:0006865 "amino acid transport"
evidence=RCA] [GO:0006944 "cellular membrane fusion" evidence=RCA]
[GO:0006984 "ER-nucleus signaling pathway" evidence=RCA]
[GO:0007154 "cell communication" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009414 "response to water
deprivation" evidence=RCA] [GO:0009611 "response to wounding"
evidence=RCA] [GO:0009627 "systemic acquired resistance"
evidence=RCA] [GO:0009697 "salicylic acid biosynthetic process"
evidence=RCA] [GO:0009738 "abscisic acid mediated signaling
pathway" evidence=RCA] [GO:0009862 "systemic acquired resistance,
salicylic acid mediated signaling pathway" evidence=RCA]
[GO:0009867 "jasmonic acid mediated signaling pathway"
evidence=RCA] [GO:0010363 "regulation of plant-type hypersensitive
response" evidence=RCA] [GO:0030968 "endoplasmic reticulum unfolded
protein response" evidence=RCA] [GO:0031348 "negative regulation of
defense response" evidence=RCA] [GO:0034976 "response to
endoplasmic reticulum stress" evidence=RCA] [GO:0042538
"hyperosmotic salinity response" evidence=RCA] [GO:0043069
"negative regulation of programmed cell death" evidence=RCA]
[GO:0050832 "defense response to fungus" evidence=RCA]
InterPro:IPR000225 InterPro:IPR003613 InterPro:IPR016024
Pfam:PF00514 Pfam:PF04564 PROSITE:PS50176 SMART:SM00185
SMART:SM00504 UniPathway:UPA00143 EMBL:CP002688
GenomeReviews:BA000015_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 GO:GO:0000151 EMBL:AB007645 HOGENOM:HOG000238412
HSSP:Q8VZ40 EMBL:BT015818 EMBL:BT020206 EMBL:AK229487
IPI:IPI00537014 RefSeq:NP_201535.3 UniGene:At.28815
ProteinModelPortal:Q5XEZ8 SMR:Q5XEZ8 STRING:Q5XEZ8 PaxDb:Q5XEZ8
PRIDE:Q5XEZ8 EnsemblPlants:AT5G67340.1 GeneID:836869
KEGG:ath:AT5G67340 TAIR:At5g67340 eggNOG:NOG269447
InParanoid:Q5XEZ8 OMA:LASWCET PhylomeDB:Q5XEZ8
ProtClustDB:CLSN2681130 Genevestigator:Q5XEZ8 Uniprot:Q5XEZ8
Length = 707
Score = 120 (47.3 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 37/117 (31%), Positives = 62/117 (52%)
Query: 456 ADQI--LRNLERNPDNIKCMAENGLLEPLMHHLNEGS-EEIQMEMASYLGEIVLGHDSKI 512
AD + L NL N +N +AE+G + PL+H L G EE + A+ L + + + K
Sbjct: 481 ADAVTCLLNLSINDNNKSLIAESGAIVPLIHVLKTGYLEEAKANSAATLFSLSVIEEYKT 540
Query: 513 NVPGRAAST--LIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEM 567
+ G A + L+ ++ SG+ ++ A AL +S HH + ++EAG V+ + E M
Sbjct: 541 EI-GEAGAIEPLVDLLGSGSLSGKKDAATALFNLSIHHENKTKVIEAGAVRYLVELM 596
Score = 108 (43.1 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 24/72 (33%), Positives = 36/72 (50%)
Query: 234 FYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVAL 293
F C L+ E+M DPV + SG T+ER I W + G + CP T + L L N +
Sbjct: 244 FRCSLSLELMTDPVIVASGQTFERVFIQKWIDM----GLMVCPKTRQALSHTTLTPNFIV 299
Query: 294 KTTIEEWKDRND 305
+ + W + N+
Sbjct: 300 RAFLASWCETNN 311
Score = 89 (36.4 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 44/237 (18%), Positives = 91/237 (38%)
Query: 327 EAIKDLQTVCQRKQYNKVQVRNVGVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKE 386
EA ++ + + N++ + +P L LL D ++ A+ L L + D+ K
Sbjct: 440 EATARIRILARNSTDNRIVIARCEAIPSLVSLLYSTDERIQADAVTCLLNLSINDNN-KS 498
Query: 387 MIAETMDXXXXXXXXXXXH-RPVRHEXXXXXXXXXXXXXXCEKIGSIPGGILVLITFKFN 445
+IAE+ + + +IG G I L+ +
Sbjct: 499 LIAESGAIVPLIHVLKTGYLEEAKANSAATLFSLSVIEEYKTEIGEA-GAIEPLVDLLGS 557
Query: 446 WSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIV 505
S+ + A L NL + +N + E G + L+ ++ ++ + L +
Sbjct: 558 GSLS--GKKDAATALFNLSIHHENKTKVIEAGAVRYLVELMDPAFGMVEKAVV-VLANLA 614
Query: 506 LGHDSKINVPGRAA-STLIRMVHSGNSLTRRIAFKALMQISSHHPS-CKILVEAGIV 560
+ KI + L+ +V G++ + A AL+Q+ +H P C ++ G++
Sbjct: 615 TVREGKIAIGEEGGIPVLVEVVELGSARGKENATAALLQLCTHSPKFCNNVIREGVI 671
>TAIR|locus:2013688 [details] [associations]
symbol:PUB17 "plant U-box 17" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA]
[GO:0016567 "protein ubiquitination" evidence=IEA;IDA] [GO:0009626
"plant-type hypersensitive response" evidence=IGI] [GO:0009814
"defense response, incompatible interaction" evidence=IMP]
[GO:0009817 "defense response to fungus, incompatible interaction"
evidence=IGI] InterPro:IPR000225 InterPro:IPR003613
InterPro:IPR016024 Pfam:PF00514 Pfam:PF04564 PROSITE:PS50176
SMART:SM00185 SMART:SM00504 UniPathway:UPA00143 EMBL:CP002684
GenomeReviews:CT485782_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0009817 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004842 UniGene:At.17411 EMBL:AC068667
GO:GO:0000151 eggNOG:NOG329430 HOGENOM:HOG000238412 OMA:ENRAYIA
HSSP:Q8VZ40 EMBL:AY064045 EMBL:AY150512 IPI:IPI00523315 PIR:A86416
RefSeq:NP_174228.1 UniGene:At.27415 ProteinModelPortal:Q9C7R6
SMR:Q9C7R6 IntAct:Q9C7R6 STRING:Q9C7R6 PRIDE:Q9C7R6
EnsemblPlants:AT1G29340.1 GeneID:839808 KEGG:ath:AT1G29340
TAIR:At1g29340 InParanoid:Q9C7R6 PhylomeDB:Q9C7R6
ProtClustDB:CLSN2679704 Genevestigator:Q9C7R6 Uniprot:Q9C7R6
Length = 729
Score = 149 (57.5 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 34/82 (41%), Positives = 46/82 (56%)
Query: 223 VAQYIEPLYET----FYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTT 278
VAQ I + T F CP++ ++M DPV I +G TY+RN+I W E+ G CP T
Sbjct: 294 VAQEIGDTFITVPKDFVCPISLDLMTDPVIISTGQTYDRNSIARWIEE----GHCTCPKT 349
Query: 279 GKKLMSRGLNTNVALKTTIEEW 300
G+ LM + N ALK I +W
Sbjct: 350 GQMLMDSRIVPNRALKNLIVQW 371
Score = 78 (32.5 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 26/98 (26%), Positives = 45/98 (45%)
Query: 464 ERNPDNIKCMAENGLLEPLMHHLNEG-SEEIQMEMASYLGEIVLGHDSK--INVPGRAAS 520
E+N I M E LE ++ L G + E Q A+ L + H+ K I + +
Sbjct: 479 EKNKSRI--MEEGDCLESIVSVLVSGLTVEAQENAAATLFSLSAVHEYKKRIAIVDQCVE 536
Query: 521 TLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAG 558
L ++ +G ++ A AL +S+H +C ++E G
Sbjct: 537 ALALLLQNGTPRGKKDAVTALYNLSTHPDNCSRMIEGG 574
Score = 68 (29.0 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 26/86 (30%), Positives = 39/86 (45%)
Query: 460 LRNLERNPDNIKCMAENGLLEPLMHHL-NEGSEEIQMEMASYLGEIVLGHDSKINVPGRA 518
L NL +PDN M E G + L+ L NEG E + L LG ++ I A
Sbjct: 557 LYNLSTHPDNCSRMIEGGGVSSLVGALKNEGVAEEAAGALALLVRQSLGAEA-IGKEDSA 615
Query: 519 ASTLIRMVHSGNSLTRRIAFKALMQI 544
+ L+ M+ G + A AL+++
Sbjct: 616 VAGLMGMMRCGTPRGKENAVAALLEL 641
Score = 43 (20.2 bits), Expect = 6.2e-06, Sum P(2) = 6.2e-06
Identities = 16/65 (24%), Positives = 35/65 (53%)
Query: 880 QNTFCLIDAKAVDRLLACLYHENVEVVEAALSALCTL-LDEKVDVDKSVSMLSEVNAIQH 938
+N + +A A+ L L EN E +++A+ L + EK +KS ++ E + ++
Sbjct: 439 ENRAYIAEAGAIPHLCRLLTSENAIAQENSVTAMLNLSIYEK---NKS-RIMEEGDCLES 494
Query: 939 VLNVV 943
+++V+
Sbjct: 495 IVSVL 499
>TAIR|locus:2195563 [details] [associations]
symbol:PUB19 "plant U-box 19" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016567 "protein ubiquitination" evidence=IEA]
[GO:0010029 "regulation of seed germination" evidence=IGI]
InterPro:IPR001841 InterPro:IPR000225 InterPro:IPR003613
InterPro:IPR016024 Pfam:PF00514 Pfam:PF04564 PROSITE:PS50176
SMART:SM00184 SMART:SM00504 UniPathway:UPA00143 EMBL:CP002684
GenomeReviews:CT485782_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0010029 GO:GO:0004842 GO:GO:0000151
EMBL:AC004473 HOGENOM:HOG000238412 HSSP:Q8VZ40 eggNOG:NOG251934
ProtClustDB:CLSN2679599 IPI:IPI00530780 PIR:T02271
RefSeq:NP_176225.1 UniGene:At.66059 ProteinModelPortal:O80742
SMR:O80742 PaxDb:O80742 PRIDE:O80742 EnsemblPlants:AT1G60190.1
GeneID:842314 KEGG:ath:AT1G60190 TAIR:At1g60190 InParanoid:O80742
OMA:TELHVAM PhylomeDB:O80742 Genevestigator:O80742 Uniprot:O80742
Length = 686
Score = 167 (63.8 bits), Expect = 2.8e-09, Sum P(3) = 2.8e-09
Identities = 52/153 (33%), Positives = 78/153 (50%)
Query: 236 CPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVALKT 295
CP++ EIM DPV +ESG TY+R++IT WF SG+I CP TGK L+S L N ++K
Sbjct: 284 CPISLEIMSDPVVLESGHTYDRSSITKWF----ASGNITCPKTGKTLVSTVLVDNFSVKQ 339
Query: 296 TIEEWKDRNDAE-----RIKVSRAALSLAGSDRMVLEAIKDLQTVCQRKQYNKVQVRNVG 350
I+ + +N + KV A SLA + L A + K + V+ +
Sbjct: 340 VIQSYSKQNGVVMGQKGKKKVD-VAESLAAEEAGKLTA--EFLAGELIKGDEEEMVKALV 396
Query: 351 VLPLLTKLLE-YKDRNVRCAAMELLRQLVVEDD 382
+ +LTK Y+ V +E L +++ DD
Sbjct: 397 EIRILTKTSTFYRSCLVEAGVVESLMKILRSDD 429
Score = 58 (25.5 bits), Expect = 2.8e-09, Sum P(3) = 2.8e-09
Identities = 21/79 (26%), Positives = 35/79 (44%)
Query: 472 CMAENGLLEPLMHHLNEGSEEIQME-MASY--LGEIVLGHDSKINVPGRAASTLIRMVHS 528
C+ E G++E LM L IQ MA L + + G + G ++ +++
Sbjct: 411 CLVEAGVVESLMKILRSDDPRIQENAMAGIMNLSKDIAGKTRIVGEDGGGLRLIVEVLND 470
Query: 529 G-NSLTRRIAFKALMQISS 546
G +R+ A AL +SS
Sbjct: 471 GARRESRQYAAAALFYLSS 489
Score = 51 (23.0 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 23/77 (29%), Positives = 39/77 (50%)
Query: 454 EIADQILRNLERNPDNIK-CMAENGLLEPLMHHLNEGSEEIQM--EMASYLGEIVLGHDS 510
++A +IL + E +P + C+A LL L H N GS+ + + S +G + +
Sbjct: 592 KLAVKILGSSEVSPATKQHCVA---LLLNLCH--NGGSDVVGSLAKNPSIMGSLYTASSN 646
Query: 511 KINVPGRAASTLIRMVH 527
G+ AS LI+M+H
Sbjct: 647 GELGGGKKASALIKMIH 663
Score = 42 (19.8 bits), Expect = 2.8e-09, Sum P(3) = 2.8e-09
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 9 SITSLADSLLESISEI 24
S+T+L DSLL+ EI
Sbjct: 25 SLTTLVDSLLQLAGEI 40
>TAIR|locus:2102455 [details] [associations]
symbol:AT3G54790 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005871
"kinesin complex" evidence=IEA] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0019894 "kinesin binding"
evidence=IEA] InterPro:IPR000225 InterPro:IPR003613
InterPro:IPR016024 Pfam:PF00514 Pfam:PF04564 PROSITE:PS50176
SMART:SM00185 SMART:SM00504 UniPathway:UPA00143 EMBL:CP002686
GenomeReviews:BA000014_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 GO:GO:0000151 EMBL:AL138650 HOGENOM:HOG000238412
HSSP:Q8VZ40 EMBL:AK118613 IPI:IPI00538000 PIR:T47638
RefSeq:NP_191039.2 UniGene:At.1218 UniGene:At.48768
ProteinModelPortal:Q8GWV5 SMR:Q8GWV5 PaxDb:Q8GWV5 PRIDE:Q8GWV5
EnsemblPlants:AT3G54790.1 GeneID:824644 KEGG:ath:AT3G54790
TAIR:At3g54790 eggNOG:NOG259040 InParanoid:Q8GWV5 OMA:LSHFRNQ
PhylomeDB:Q8GWV5 ProtClustDB:CLSN2680413 Genevestigator:Q8GWV5
Uniprot:Q8GWV5
Length = 760
Score = 124 (48.7 bits), Expect = 7.0e-09, Sum P(2) = 7.0e-09
Identities = 31/84 (36%), Positives = 45/84 (53%)
Query: 222 KVAQYIE-PLYETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGK 280
+VA+ I P Y F CPL+ E+M DPV + SG T++R +I W + +G CP T +
Sbjct: 231 EVAKGISIPPY--FRCPLSTELMLDPVIVASGQTFDRTSIKKWLD----NGLAVCPRTRQ 284
Query: 281 KLMSRGLNTNVALKTTIEEWKDRN 304
L + L N +K I W + N
Sbjct: 285 VLTHQELIPNYTVKAMIASWLEAN 308
Score = 98 (39.6 bits), Expect = 7.0e-09, Sum P(2) = 7.0e-09
Identities = 36/134 (26%), Positives = 62/134 (46%)
Query: 434 GGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEI 493
G I L++ + S + E A L NL + N + E G +EPL+H LN G++
Sbjct: 514 GAITPLLSLLY--SEEKLTQEHAVTALLNLSISELNKAMIVEVGAIEPLVHVLNTGNDRA 571
Query: 494 QMEMASYLGEI-VLG-HDSKINVPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSC 551
+ A+ L + VL + +I A L+ ++ G ++ A AL +S H +
Sbjct: 572 KENSAASLFSLSVLQVNRERIGQSNAAIQALVNLLGKGTFRGKKDAASALFNLSITHDNK 631
Query: 552 KILVEAGIVQVMAE 565
+V+A V+ + E
Sbjct: 632 ARIVQAKAVKYLVE 645
Score = 67 (28.6 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 42/243 (17%), Positives = 87/243 (35%)
Query: 319 AGSDRMVLEAIKDLQTVCQRKQYNKVQVRNVGVLPLLTKLLEYKDRNVRCAAMELLRQLV 378
+GS+++ A +++ + N+V + G + L LL +++ + A+ L L
Sbjct: 483 SGSNKVKTAAAAEIRHLTINSIENRVHIGRCGAITPLLSLLYSEEKLTQEHAVTALLNLS 542
Query: 379 VEDDEGKEMIAETMDXXXXXXXXXXXHRPVRHEXXXXXXXXXXXXXXCEKIGSIPGGILV 438
+ + K MI E + + E+IG I
Sbjct: 543 ISE-LNKAMIVEVGAIEPLVHVLNTGNDRAKENSAASLFSLSVLQVNRERIGQSNAAIQA 601
Query: 439 LITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMA 498
L+ + + A L NL DN + + ++ L+ L+ E + +A
Sbjct: 602 LVNLLGKGTFR--GKKDAASALFNLSITHDNKARIVQAKAVKYLVELLDPDLEMVDKAVA 659
Query: 499 SYLGEIVLGHDSKINVPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPS-CKILVEA 557
+G + V L+ V G+ + A L+Q+ + P C ++++
Sbjct: 660 LLANLSAVGEGRQAIVREGGIPLLVETVDLGSQRGKENAASVLLQLCLNSPKFCTLVLQE 719
Query: 558 GIV 560
G +
Sbjct: 720 GAI 722
Score = 60 (26.2 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 22/63 (34%), Positives = 34/63 (53%)
Query: 890 AVDRLLACLYHENVEVVEAALSALCTLLDEKVDVDKSVSMLSEVNAIQ---HVLNVVKEH 946
A+ LL+ LY E E A++AL L +++K+ M+ EV AI+ HVLN +
Sbjct: 515 AITPLLSLLYSEEKLTQEHAVTALLNLSIS--ELNKA--MIVEVGAIEPLVHVLNTGNDR 570
Query: 947 RQE 949
+E
Sbjct: 571 AKE 573
Score = 59 (25.8 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 15/40 (37%), Positives = 28/40 (70%)
Query: 900 HEN-VEVVEA-ALSALCTLLDEKVD-VDKSVSMLSEVNAI 936
H+N +V+A A+ L LLD ++ VDK+V++L+ ++A+
Sbjct: 628 HDNKARIVQAKAVKYLVELLDPDLEMVDKAVALLANLSAV 667
>UNIPROTKB|Q0IMG9 [details] [associations]
symbol:SPL11 "E3 ubiquitin-protein ligase SPL11"
species:39947 "Oryza sativa Japonica Group" [GO:0004842
"ubiquitin-protein ligase activity" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0016567 "protein
ubiquitination" evidence=IDA] [GO:0031348 "negative regulation of
defense response" evidence=IMP] [GO:0043069 "negative regulation of
programmed cell death" evidence=IMP] [GO:0048586 "regulation of
long-day photoperiodism, flowering" evidence=IMP]
InterPro:IPR000225 InterPro:IPR003613 InterPro:IPR016024
Pfam:PF00514 Pfam:PF04564 PROSITE:PS50176 SMART:SM00185
SMART:SM00504 UniPathway:UPA00143 GO:GO:0005829 GO:GO:0005634
GO:GO:0006952 SUPFAM:SSF48371 GO:GO:0031348 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0043069 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0009908 GO:GO:0004842 GO:GO:0000151
EMBL:DP000011 EMBL:AP008218 GO:GO:0048586 eggNOG:NOG242845
EMBL:AY652589 EMBL:AY652590 EMBL:AK105835 RefSeq:NP_001067077.2
UniGene:Os.21174 ProteinModelPortal:Q0IMG9 SMR:Q0IMG9
GeneID:4352575 KEGG:dosa:Os03t0275900-01 KEGG:dosa:Os12t0570000-01
KEGG:osa:4352575 Gramene:Q0IMG9 Uniprot:Q0IMG9
Length = 694
Score = 178 (67.7 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 49/178 (27%), Positives = 83/178 (46%)
Query: 232 ETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNV 291
+ F CP++ E+M DPV + +G TYER I W SG CPTT +K+ + L N
Sbjct: 275 DEFRCPISLELMKDPVIVSTGQTYERACIEKWI----ASGHHTCPTTQQKMSTSALTPNY 330
Query: 292 ALKTTIEEWKDRNDAERIKVS----RAALSLAGSDRMVLEAI----------------KD 331
L++ I +W + N E K S + + + S+R ++A+ +
Sbjct: 331 VLRSLISQWCETNGMEPPKRSTQPNKPTPACSSSERANIDALLSKLCSPDTEEQRSAAAE 390
Query: 332 LQTVCQRKQYNKVQVRNVGVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIA 389
L+ + +R N++ + G +PLL LL D + A+ L L + +D +I+
Sbjct: 391 LRLLAKRNANNRICIAEAGAIPLLLSLLSSSDLRTQEHAVTALLNLSIHEDNKASIIS 448
Score = 37 (18.1 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 14/64 (21%), Positives = 28/64 (43%)
Query: 13 LADSLLESISEITAVCMELESEKFTEIGCYFYRATPVIMELQTTKYTPANALEILQSLSK 72
++D + E + E+ ++ E+ FY ++ + Y P+ L IL LS+
Sbjct: 144 ISDEVREQV-ELVHAQLKRAKERIDMPDDEFYND---LLSVYDKNYDPSAELAILGRLSE 199
Query: 73 SISL 76
+ L
Sbjct: 200 KLHL 203
>TAIR|locus:2082682 [details] [associations]
symbol:PUB14 "plant U-box 14" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA]
[GO:0005871 "kinesin complex" evidence=IEA] [GO:0016567 "protein
ubiquitination" evidence=IEA;ISS] [GO:0019894 "kinesin binding"
evidence=IEA] [GO:0070696 "transmembrane receptor protein
serine/threonine kinase binding" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0046777 "protein autophosphorylation"
evidence=RCA] InterPro:IPR000225 InterPro:IPR003613
InterPro:IPR016024 Pfam:PF00514 Pfam:PF04564 PROSITE:PS50176
SMART:SM00185 SMART:SM00504 UniPathway:UPA00143 EMBL:CP002686
GenomeReviews:BA000014_GR SUPFAM:SSF48371 EMBL:AL049655
Gene3D:1.25.10.10 InterPro:IPR011989 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151 HOGENOM:HOG000238412
eggNOG:NOG242845 OMA:KTGSPRN EMBL:AY065279 EMBL:AY096530
IPI:IPI00539579 PIR:T06735 RefSeq:NP_191045.2 UniGene:At.28098
PDB:1T1H PDBsum:1T1H ProteinModelPortal:Q8VZ40 SMR:Q8VZ40
IntAct:Q8VZ40 STRING:Q8VZ40 PaxDb:Q8VZ40 PRIDE:Q8VZ40
EnsemblPlants:AT3G54850.1 GeneID:824650 KEGG:ath:AT3G54850
TAIR:At3g54850 InParanoid:Q8VZ40 PhylomeDB:Q8VZ40
ProtClustDB:CLSN2690608 EvolutionaryTrace:Q8VZ40
Genevestigator:Q8VZ40 GermOnline:AT3G54850 Uniprot:Q8VZ40
Length = 632
Score = 146 (56.5 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 31/86 (36%), Positives = 49/86 (56%)
Query: 223 VAQYIEPLY-ETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKK 281
V+++ P+ E F CP++ E+M DPV + +G TYER++I W + +G CP + +
Sbjct: 240 VSRHRSPVIPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLD----AGHKTCPKSQET 295
Query: 282 LMSRGLNTNVALKTTIEEWKDRNDAE 307
L+ GL N LK+ I W + N E
Sbjct: 296 LLHAGLTPNYVLKSLIALWCESNGIE 321
Score = 69 (29.3 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 23/102 (22%), Positives = 45/102 (44%)
Query: 460 LRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDSKINVPGRAA 519
L NL N N + + G + ++ L GS E + A+ L + + ++K+ + A
Sbjct: 411 LLNLSINEGNKGAIVDAGAITDIVEVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGA 470
Query: 520 -STLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIV 560
LI ++ G ++ A A+ + + + V+ GIV
Sbjct: 471 IQALISLLEEGTRRGKKDAATAIFNLCIYQGNKSRAVKGGIV 512
Score = 68 (29.0 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 26/106 (24%), Positives = 47/106 (44%)
Query: 460 LRNL-ERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDSKINVPGRA 518
LR L +RN DN C+AE G + L+ L+ Q + L + + +K +
Sbjct: 369 LRLLAKRNVDNRVCIAEAGAIPLLVELLSSPDPRTQEHSVTALLNLSINEGNKGAIVDAG 428
Query: 519 AST-LIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIVQVM 563
A T ++ ++ +G+ R A L +S + + AG +Q +
Sbjct: 429 AITDIVEVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIQAL 474
Score = 52 (23.4 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 16/65 (24%), Positives = 35/65 (53%)
Query: 881 NTFCLIDAKAVDRLLACLYHENVEVVEAALSALCTLLDEKVDVDKSVSMLSEVNAIQHVL 940
N ++DA A+ ++ L + ++E E +A TL V +D++ + AIQ ++
Sbjct: 420 NKGAIVDAGAITDIVEVLKNGSMEARE---NAAATLFSLSV-IDENKVAIGAAGAIQALI 475
Query: 941 NVVKE 945
++++E
Sbjct: 476 SLLEE 480
Score = 50 (22.7 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 19/86 (22%), Positives = 41/86 (47%)
Query: 482 LMHHLNEGSEEIQMEMASYLGEIVLGH-DSKINVPGRAA-STLIRMVHSGNSLTRRIAFK 539
L+ L G+ E Q A L + + D+++ + A L+ ++ S + T+ +
Sbjct: 350 LLEKLANGTTEQQRAAAGELRLLAKRNVDNRVCIAEAGAIPLLVELLSSPDPRTQEHSVT 409
Query: 540 ALMQISSHHPSCKILVEAGIVQVMAE 565
AL+ +S + + +V+AG + + E
Sbjct: 410 ALLNLSINEGNKGAIVDAGAITDIVE 435
Score = 49 (22.3 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 19/85 (22%), Positives = 35/85 (41%)
Query: 459 ILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDSKINVPGRA 518
IL L N + +AE + L+ + GS + A+ L + +G+ ++NV
Sbjct: 533 ILAILSTNQEGKTAIAEAESIPVLVEIIRTGSPRNRENAAAILWYLCIGNIERLNVAREV 592
Query: 519 AS--TLIRMVHSGNSLTRRIAFKAL 541
+ L + +G +R A L
Sbjct: 593 GADVALKELTENGTDRAKRKAASLL 617
Score = 41 (19.5 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 13/59 (22%), Positives = 27/59 (45%)
Query: 719 TEKQAVSAKFLAKLPHQNLTLNLALSARNVVPTILQTINLIQRSGTRTSRYASAYLEGL 777
TE+Q +A L L +N+ + ++ +P +++ L+ RT ++ L L
Sbjct: 359 TEQQRAAAGELRLLAKRNVDNRVCIAEAGAIPLLVE---LLSSPDPRTQEHSVTALLNL 414
>TAIR|locus:2194564 [details] [associations]
symbol:PUB18 "plant U-box 18" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016567 "protein
ubiquitination" evidence=IEA;IDA] [GO:0010029 "regulation of seed
germination" evidence=IGI] InterPro:IPR001841 InterPro:IPR000225
InterPro:IPR003613 InterPro:IPR016024 Pfam:PF00514 Pfam:PF04564
PROSITE:PS50176 SMART:SM00184 SMART:SM00185 SMART:SM00504
UniPathway:UPA00143 EMBL:CP002684 GenomeReviews:CT485782_GR
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0010029 GO:GO:0004842
EMBL:AC007067 GO:GO:0000151 HOGENOM:HOG000238412 HSSP:Q8VZ40
EMBL:AY075683 IPI:IPI00537444 PIR:B86239 RefSeq:NP_172526.1
UniGene:At.14982 ProteinModelPortal:Q9XIJ5 SMR:Q9XIJ5 PRIDE:Q9XIJ5
EnsemblPlants:AT1G10560.1 GeneID:837597 KEGG:ath:AT1G10560
TAIR:At1g10560 eggNOG:NOG251934 InParanoid:Q9XIJ5 OMA:EPSSKHR
PhylomeDB:Q9XIJ5 ProtClustDB:CLSN2679599 Genevestigator:Q9XIJ5
Uniprot:Q9XIJ5
Length = 697
Score = 157 (60.3 bits), Expect = 2.8e-08, Sum P(3) = 2.8e-08
Identities = 36/82 (43%), Positives = 48/82 (58%)
Query: 232 ETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNV 291
E CP++ EIM DPV IE+G TY+R++IT WF SG+I CP TGK L S L NV
Sbjct: 290 EDLLCPISLEIMTDPVVIETGHTYDRSSITKWFG----SGNITCPITGKILTSTELVDNV 345
Query: 292 ALKTTIEEWKDRNDAERIKVSR 313
+++ I + N +SR
Sbjct: 346 SVRQVIRKHCKTNGIVLAGISR 367
Score = 61 (26.5 bits), Expect = 2.8e-08, Sum P(3) = 2.8e-08
Identities = 22/91 (24%), Positives = 44/91 (48%)
Query: 469 NIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLG-H-DSKINVPGRAASTLIRMV 526
N C+ + G + PL+ L+ S +I+++ + G + L H K + G L+ ++
Sbjct: 422 NRSCLVKAGAVTPLLKLLS--SVDIRIQENAMAGILNLSKHVTGKSKIAGEGLKILVEIL 479
Query: 527 HSG-NSLTRRIAFKALMQISSHHPSCKILVE 556
+ G + TR + AL +SS +++ E
Sbjct: 480 NEGAKTETRLYSASALFYLSSVEDYSRLIGE 510
Score = 57 (25.1 bits), Expect = 5.5e-08, Sum P(3) = 5.5e-08
Identities = 17/70 (24%), Positives = 33/70 (47%)
Query: 320 GSDRMVLEAIKDLQTVCQRKQYNKVQVRNVGVLPLLTKLLEYKDRNVRCAAMELLRQLVV 379
G + M+ A+++++ + +N+ + G + L KLL D ++ AM + L
Sbjct: 400 GGEEMIYRAVREIRVQTKTSSFNRSCLVKAGAVTPLLKLLSSVDIRIQENAMAGILNLS- 458
Query: 380 EDDEGKEMIA 389
+ GK IA
Sbjct: 459 KHVTGKSKIA 468
Score = 55 (24.4 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 878 SSQNTFCLIDAKAVDRLLACLYHENVEVVEAALSALCTL 916
SS N CL+ A AV LL L ++ + E A++ + L
Sbjct: 419 SSFNRSCLVKAGAVTPLLKLLSSVDIRIQENAMAGILNL 457
Score = 41 (19.5 bits), Expect = 5.5e-08, Sum P(3) = 5.5e-08
Identities = 22/78 (28%), Positives = 39/78 (50%)
Query: 454 EIADQILRNLERNPDNIK--CMAENGLLEPLMHHLNEGSEEIQMEMASYL--GEIVLGHD 509
++A +IL + E +P +K C+ GL+ L LN G + + + + + L G +
Sbjct: 602 KLAVKILSSSEDSPVAVKQHCV---GLILNLC--LNGGRDVVGVLVKNSLVMGSLYTVLS 656
Query: 510 SKINVPGRAASTLIRMVH 527
+ + AS LIRM+H
Sbjct: 657 NGEYGGSKKASALIRMIH 674
Score = 40 (19.1 bits), Expect = 2.8e-08, Sum P(3) = 2.8e-08
Identities = 25/134 (18%), Positives = 58/134 (43%)
Query: 879 SQNTFCLIDAKAVDRLLACLYHENVEVVEAALSALC--TLLDEKVDVDKSVSMLSEVNAI 936
S N + ++ A AV LL L + E+ L+A C TL D ++ ++ +
Sbjct: 546 SDNHWRVLAAGAVPILLDLL--RSGEI-SGGLTADCLATLAKLAEYPDGTIGVIRR-GGL 601
Query: 937 QHVLNVVK--EHRQEVLQQKSFWMIERFLVKGGNKQASDISQDRLLPATLVSAFHHGDVN 994
+ + ++ E ++Q +I + GG + ++ L+ +L + +G+
Sbjct: 602 KLAVKILSSSEDSPVAVKQHCVGLILNLCLNGGRDVVGVLVKNSLVMGSLYTVLSNGEYG 661
Query: 995 TRQMAEKILRHLNK 1008
+ A ++R +++
Sbjct: 662 GSKKASALIRMIHE 675
>UNIPROTKB|Q6EUK7 [details] [associations]
symbol:PUB4 "U-box domain-containing protein 4"
species:39947 "Oryza sativa Japonica Group" [GO:0004842
"ubiquitin-protein ligase activity" evidence=IDA] [GO:0016567
"protein ubiquitination" evidence=IDA] InterPro:IPR000225
InterPro:IPR003613 InterPro:IPR016024 Pfam:PF00514 Pfam:PF04564
PROSITE:PS50176 SMART:SM00185 SMART:SM00504 UniPathway:UPA00143
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842 EMBL:AP008208
EMBL:CM000139 GO:GO:0000151 EMBL:AP004030 EMBL:AK062592
RefSeq:NP_001046379.1 UniGene:Os.5133 ProteinModelPortal:Q6EUK7
EnsemblPlants:LOC_Os02g13960.1 GeneID:4328818
KEGG:dosa:Os02t0234300-01 KEGG:osa:4328818 Gramene:Q6EUK7
eggNOG:NOG329430 HOGENOM:HOG000238412 OMA:ENRAYIA
ProtClustDB:CLSN2692596 Uniprot:Q6EUK7
Length = 728
Score = 126 (49.4 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 25/67 (37%), Positives = 38/67 (56%)
Query: 234 FYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVAL 293
F CP++ ++M DPV +G TY+R +I W E+ G CP +G+ L L N AL
Sbjct: 301 FSCPISLDLMRDPVVASTGQTYDRPSIIQWIEE----GHSTCPNSGQTLADHRLVPNRAL 356
Query: 294 KTTIEEW 300
++ I +W
Sbjct: 357 RSLISQW 363
Score = 88 (36.0 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 38/144 (26%), Positives = 66/144 (45%)
Query: 429 IGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLER-NPDNIKCMAENGLLEPLMHHLN 487
+G+IP +L + +W A E A L NL P+ + M + G L ++ L
Sbjct: 440 LGAIP--LLCRLLLSNDW----MAQENAVTALLNLSIFEPNKGRIMEQEGCLRLIVGVLQ 493
Query: 488 EG-SEEIQMEMASYLGEIVLGHDSK---INVPGRAASTLIRMVHSGNSLTRRIAFKALMQ 543
G + E + A+ L + + H+ K +N PG A L M+ G S ++ A AL
Sbjct: 494 NGWTTEAKENAAATLFSLSVVHNFKKLIMNEPG-AVEELASMLTKGTSRGKKDAVMALFN 552
Query: 544 ISSHHPSCKILVEAGIVQVMAEEM 567
+S+H S ++E+ V + + +
Sbjct: 553 LSTHPESSARMLESCAVVALIQSL 576
>TAIR|locus:2013990 [details] [associations]
symbol:AT1G71020 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0005871 "kinesin complex" evidence=IEA]
[GO:0016567 "protein ubiquitination" evidence=IEA] [GO:0019894
"kinesin binding" evidence=IEA] InterPro:IPR000225
InterPro:IPR003613 InterPro:IPR016024 Pfam:PF00514 Pfam:PF04564
PROSITE:PS50176 SMART:SM00185 SMART:SM00504 UniPathway:UPA00143
EMBL:CP002684 GenomeReviews:CT485782_GR SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:AC016972
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151
EMBL:AC008148 HOGENOM:HOG000238412 EMBL:AY075626 EMBL:AY142062
EMBL:AK220971 IPI:IPI00534706 PIR:E96734 RefSeq:NP_177258.3
UniGene:At.43068 HSSP:Q8VZ40 ProteinModelPortal:Q9C9A6 SMR:Q9C9A6
IntAct:Q9C9A6 PaxDb:Q9C9A6 PRIDE:Q9C9A6 EnsemblPlants:AT1G71020.1
GeneID:843442 KEGG:ath:AT1G71020 TAIR:At1g71020 eggNOG:NOG261082
InParanoid:Q9C9A6 OMA:FQARESS PhylomeDB:Q9C9A6
ProtClustDB:CLSN2681864 Genevestigator:Q9C9A6 Uniprot:Q9C9A6
Length = 628
Score = 142 (55.0 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
Identities = 27/77 (35%), Positives = 45/77 (58%)
Query: 232 ETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNV 291
E F CP++ E+M DP + +G TYER+ I W + G++ CP T +KL + L N
Sbjct: 245 EDFLCPISLELMKDPAIVSTGQTYERSFIQRWID----CGNLSCPKTQQKLENFTLTPNY 300
Query: 292 ALKTTIEEWKDRNDAER 308
L++ I +W +++ E+
Sbjct: 301 VLRSLISQWCTKHNIEQ 317
Score = 61 (26.5 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
Identities = 15/62 (24%), Positives = 33/62 (53%)
Query: 328 AIKDLQTVCQRKQYNKVQVRNVGVLPLLTKLLEYK-DRNVRCAAMELLRQLVVEDDEGKE 386
A+ +++++ +R N++ + G +P+L KLL D + A+ + L + + KE
Sbjct: 361 AVSEIRSLSKRSTDNRILIAEAGAIPVLVKLLTSDGDTETQENAVTCILNLSIYE-HNKE 419
Query: 387 MI 388
+I
Sbjct: 420 LI 421
Score = 61 (26.5 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
Identities = 31/133 (23%), Positives = 57/133 (42%)
Query: 434 GGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEI 493
G I VL+ + D E A + NL N + + G + ++ L GS E
Sbjct: 383 GAIPVLVKLLTSDG-DTETQENAVTCILNLSIYEHNKELIMLAGAVTSIVLVLRAGSMEA 441
Query: 494 QMEMASYLGEIVLGHDSKINVPGRAA-STLIRMVHSGNSLTRRIAFKALMQISSHHPSCK 552
+ A+ L + L ++KI + A L+ ++ G+ ++ A AL + + +
Sbjct: 442 RENAAATLFSLSLADENKIIIGASGAIMALVDLLQYGSVRGKKDAATALFNLCIYQGNKG 501
Query: 553 ILVEAGIVQVMAE 565
V AGIV+ + +
Sbjct: 502 RAVRAGIVKPLVK 514
Score = 47 (21.6 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
Identities = 20/88 (22%), Positives = 42/88 (47%)
Query: 885 LIDAKAVDRLLACLYHENVEVVEAALSALCTLLDEKVDVDKSVSMLSEVNAIQHVLNVVK 944
++ A A+ L+ CL + E A + L L K D +K +S + + A+ ++ + +
Sbjct: 545 ILRANAIPPLIDCLQKDQPRNRENAAAILLCLC--KRDTEKLIS-IGRLGAVVPLMELSR 601
Query: 945 EHRQEVLQQKSFWMIERFLVKGGNKQAS 972
+ + ++K+ ++E L K K S
Sbjct: 602 DGTERA-KRKANSLLE-LLRKSSRKLGS 627
Score = 46 (21.3 bits), Expect = 3.4e-05, Sum P(3) = 3.4e-05
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 316 LSLAGSDRMVLEAIKDLQTVCQRKQYNKVQVRNVGVLPLLTKLLEYKDRNVRCAAMELL 374
L+ + S+RM EA+ L + + +R + PL+ L + + RN AA LL
Sbjct: 516 LTDSSSERMADEALTILSVLASNQVAKTAILRANAIPPLIDCLQKDQPRNRENAAAILL 574
Score = 38 (18.4 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 454 EIADQILRNL-ERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYL 501
E A IL L +R+ + + + G + PLM +G+E + + S L
Sbjct: 567 ENAAAILLCLCKRDTEKLISIGRLGAVVPLMELSRDGTERAKRKANSLL 615
>TAIR|locus:2017719 [details] [associations]
symbol:AT1G23030 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0016567
"protein ubiquitination" evidence=IEA] [GO:0010200 "response to
chitin" evidence=IEP] InterPro:IPR000225 InterPro:IPR003613
InterPro:IPR016024 Pfam:PF00514 Pfam:PF04564 PROSITE:PS50176
SMART:SM00185 SMART:SM00504 UniPathway:UPA00143 EMBL:CP002684
GenomeReviews:CT485782_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0010200 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151 EMBL:AF000657
HOGENOM:HOG000238412 HSSP:Q8VZ40 ProtClustDB:CLSN2681864
EMBL:BT002518 EMBL:AK221923 IPI:IPI00532693 PIR:D86364
RefSeq:NP_173716.1 UniGene:At.41572 UniGene:At.74178
ProteinModelPortal:Q8GUG9 SMR:Q8GUG9 PaxDb:Q8GUG9 PRIDE:Q8GUG9
EnsemblPlants:AT1G23030.1 GeneID:838911 KEGG:ath:AT1G23030
TAIR:At1g23030 eggNOG:KOG0167 InParanoid:Q8GUG9 OMA:IDCGNLT
PhylomeDB:Q8GUG9 Genevestigator:Q8GUG9 Uniprot:Q8GUG9
Length = 612
Score = 157 (60.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 47/173 (27%), Positives = 84/173 (48%)
Query: 234 FYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVAL 293
F CP++ E+M DPV + +G TYER I W + G++ CP T +KL + L N L
Sbjct: 245 FLCPVSLELMKDPVIVATGQTYERAYIQRWID----CGNLTCPKTQQKLENFTLTPNYVL 300
Query: 294 KTTIEEWKDRNDAER--------------IKVSRAALSLAGS----DRMVLEAIKDLQTV 335
++ I W ++ E+ + V RA + S DR A+ +++++
Sbjct: 301 RSLISRWCAEHNIEQPAGYINGRTKNSGDMSVIRALVQRLSSRSTEDRR--NAVSEIRSL 358
Query: 336 CQRKQYNKVQVRNVGVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMI 388
+R N++ + G +P+L LL +D + A+ + L + ++ KE+I
Sbjct: 359 SKRSTDNRILIAEAGAIPVLVNLLTSEDVATQENAITCVLNLSIYENN-KELI 410
>TAIR|locus:2181077 [details] [associations]
symbol:SAUR21 "SMALL AUXIN UP RNA 21" species:3702
"Arabidopsis thaliana" [GO:0000151 "ubiquitin ligase complex"
evidence=IEA] [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA] [GO:0016567 "protein ubiquitination" evidence=IEA]
[GO:0010200 "response to chitin" evidence=IEP] InterPro:IPR000225
InterPro:IPR003613 InterPro:IPR016024 Pfam:PF00514 Pfam:PF04564
PROSITE:PS50176 SMART:SM00504 UniPathway:UPA00143 EMBL:CP002688
GenomeReviews:BA000015_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0010200 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151 EMBL:AL162351
HOGENOM:HOG000238412 HSSP:Q8VZ40 EMBL:BT015367 EMBL:BT015725
EMBL:AK229397 IPI:IPI00524109 PIR:T48204 RefSeq:NP_195803.1
UniGene:At.33496 ProteinModelPortal:Q9LZW3 SMR:Q9LZW3 PRIDE:Q9LZW3
EnsemblPlants:AT5G01830.1 GeneID:831850 KEGG:ath:AT5G01830
TAIR:At5g01830 eggNOG:NOG307369 InParanoid:Q9LZW3 OMA:IPADFRC
PhylomeDB:Q9LZW3 ProtClustDB:CLSN2687143 Genevestigator:Q9LZW3
Uniprot:Q9LZW3
Length = 674
Score = 134 (52.2 bits), Expect = 8.6e-07, Sum P(2) = 8.6e-07
Identities = 29/67 (43%), Positives = 37/67 (55%)
Query: 234 FYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVAL 293
F CP+T E+M DPV + +G TY+R +I W + SG CP TG+ L L N AL
Sbjct: 278 FRCPITLELMRDPVVVATGQTYDRESIDLWIQ----SGHNTCPKTGQVLKHTSLVPNRAL 333
Query: 294 KTTIEEW 300
K I W
Sbjct: 334 KNLIVLW 340
Score = 66 (28.3 bits), Expect = 8.6e-07, Sum P(2) = 8.6e-07
Identities = 24/101 (23%), Positives = 47/101 (46%)
Query: 463 LERNPDNIKCMAENGLLEPLMHHLNEGSE-EIQMEMASYLGEI--VLGHDSKINVPGRAA 519
LE+N I M +G L ++ L G+ E + A+ L + V + ++ R
Sbjct: 439 LEQNKTRI--METDGALNGVIEVLRSGATWEAKANAAATLFSLAGVSAYRRRLGRKARVV 496
Query: 520 STLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIV 560
S L+ + G + ++R A A++ + + + VEAG++
Sbjct: 497 SGLVDLAKQGPTSSKRDALVAILNLVAERENVGRFVEAGVM 537
Score = 41 (19.5 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 16/74 (21%), Positives = 35/74 (47%)
Query: 460 LRNLERNPDNIK--CMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDSKINV--P 515
LR L ++ D + C+AE G + L+ +L +Q+ + + + + +K +
Sbjct: 391 LRALAKS-DTVARACIAEAGAIPKLVRYLATECPSLQINAVTTILNLSILEQNKTRIMET 449
Query: 516 GRAASTLIRMVHSG 529
A + +I ++ SG
Sbjct: 450 DGALNGVIEVLRSG 463
>TAIR|locus:2079706 [details] [associations]
symbol:PUB9 "plant U-box 9" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0016567 "protein ubiquitination"
evidence=IEA;IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0070696 "transmembrane receptor protein serine/threonine kinase
binding" evidence=IPI] [GO:0071215 "cellular response to abscisic
acid stimulus" evidence=IMP] [GO:0046777 "protein
autophosphorylation" evidence=RCA] InterPro:IPR003613
InterPro:IPR016024 Pfam:PF04564 PROSITE:PS50176 SMART:SM00504
UniPathway:UPA00143 GO:GO:0005886 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR SUPFAM:SSF48371 GO:GO:0009738
Gene3D:1.25.10.10 InterPro:IPR011989 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0071215 GO:GO:0004842 GO:GO:0000151
EMBL:AC009853 HOGENOM:HOG000238412 HSSP:Q8VZ40 EMBL:AY075636
IPI:IPI00538175 RefSeq:NP_566304.1 UniGene:At.21635
ProteinModelPortal:Q9SRT0 SMR:Q9SRT0 STRING:Q9SRT0 PaxDb:Q9SRT0
PRIDE:Q9SRT0 EnsemblPlants:AT3G07360.1 GeneID:819924
KEGG:ath:AT3G07360 TAIR:At3g07360 eggNOG:NOG271821
InParanoid:Q9SRT0 OMA:LIREMIS PhylomeDB:Q9SRT0
ProtClustDB:CLSN2917129 Genevestigator:Q9SRT0 Uniprot:Q9SRT0
Length = 460
Score = 136 (52.9 bits), Expect = 9.0e-07, Sum P(2) = 9.0e-07
Identities = 38/129 (29%), Positives = 62/129 (48%)
Query: 232 ETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNV 291
E F CPL+ E+M DPV + SG TY++ I W +SG+ CP T + L L N+
Sbjct: 76 EEFRCPLSNELMRDPVVLASGQTYDKLFIQKWL----SSGNRTCPKTQQVLPHTALTPNL 131
Query: 292 ALKTTIEEWKDRNDAERIKVSRAALSLAGSDRMVLEAIKDL--QTVCQRKQYNKVQVRNV 349
++ I +W +N E S+ +L D V + +++ +C+ N ++
Sbjct: 132 LIREMISKWCKKNGLET--KSQYHPNLVNEDETVTRSDREIFNSLLCKVSSSNLQDQKSA 189
Query: 350 GV-LPLLTK 357
L LLT+
Sbjct: 190 AKELRLLTR 198
Score = 59 (25.8 bits), Expect = 9.0e-07, Sum P(2) = 9.0e-07
Identities = 19/87 (21%), Positives = 45/87 (51%)
Query: 473 MAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDSKIN-VPGRAASTLIRMVHSGNS 531
+ ++G+L+PL+ L EG+ ++A+ + + + H+++ V A L + + +G
Sbjct: 295 IGKSGILKPLIDLLEEGNPLAIKDVAAAIFTLCIAHENRSRAVRDGAVRVLGKKISNGLY 354
Query: 532 LTRRIAFKALMQISSHHPSCKILVEAG 558
+ +A A++ +H + + L E G
Sbjct: 355 VDELLAILAMLV--THWKAVEELGELG 379
Score = 56 (24.8 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 25/112 (22%), Positives = 51/112 (45%)
Query: 460 LRNLERNPD-NIKCMAENGLLEPLM-HHLNEGSEEIQMEMASYLGEIVLGHDSKINVPGR 517
L N+ + D N K + EN + PL+ L G+ + A+ + + +K+ + G+
Sbjct: 239 LLNISIHDDSNKKLVCENPNVIPLLIDALRRGTVATRSNAAAAIFTLSALDSNKVLI-GK 297
Query: 518 AA--STLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEM 567
+ LI ++ GN L + A+ + H + V G V+V+ +++
Sbjct: 298 SGILKPLIDLLEEGNPLAIKDVAAAIFTLCIAHENRSRAVRDGAVRVLGKKI 349
>TAIR|locus:504954932 [details] [associations]
symbol:AT5G57035 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004672
"protein kinase activity" evidence=IEA] [GO:0004674 "protein
serine/threonine kinase activity" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005886 "plasma membrane" evidence=ISM]
[GO:0006468 "protein phosphorylation" evidence=IEA] [GO:0016301
"kinase activity" evidence=ISS] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0016772 "transferase activity,
transferring phosphorus-containing groups" evidence=IEA]
InterPro:IPR000719 InterPro:IPR003613 InterPro:IPR006016
InterPro:IPR008271 InterPro:IPR011009 InterPro:IPR017441
Pfam:PF00069 Pfam:PF00582 Pfam:PF04564 PROSITE:PS00107
PROSITE:PS00108 PROSITE:PS50011 SMART:SM00504 GO:GO:0005524
EMBL:CP002688 GO:GO:0006950 SUPFAM:SSF56112 GO:GO:0004674
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842
Gene3D:3.40.50.620 InterPro:IPR014729 GO:GO:0000151 IPI:IPI00538382
RefSeq:NP_680448.2 UniGene:At.23555 UniGene:At.45477
ProteinModelPortal:F4K964 SMR:F4K964 EnsemblPlants:AT5G57035.1
GeneID:835807 KEGG:ath:AT5G57035 OMA:EYQRTGT PhylomeDB:F4K964
Uniprot:F4K964
Length = 789
Score = 146 (56.5 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 29/71 (40%), Positives = 40/71 (56%)
Query: 234 FYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVAL 293
+YCP+ KEIM+DP G TYER AI W +K + D+ P T +L L N L
Sbjct: 712 YYCPILKEIMEDPQIAADGFTYERKAIKEWIQKHQ---DV-SPVTKHRLKHSDLTPNHTL 767
Query: 294 KTTIEEWKDRN 304
++ I EW+ R+
Sbjct: 768 RSAIREWRSRS 778
>TAIR|locus:2115365 [details] [associations]
symbol:AT4G36550 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005871
"kinesin complex" evidence=IEA] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0019894 "kinesin binding"
evidence=IEA] [GO:0001666 "response to hypoxia" evidence=RCA]
[GO:0009862 "systemic acquired resistance, salicylic acid mediated
signaling pathway" evidence=RCA] [GO:0010310 "regulation of
hydrogen peroxide metabolic process" evidence=RCA] [GO:0031347
"regulation of defense response" evidence=RCA] InterPro:IPR003613
InterPro:IPR016024 Pfam:PF04564 PROSITE:PS50176 SMART:SM00504
UniPathway:UPA00143 EMBL:CP002687 GenomeReviews:CT486007_GR
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842 EMBL:AL161589
GO:GO:0000151 EMBL:Z99708 HSSP:Q8VZ40 IPI:IPI00536151 PIR:E85431
RefSeq:NP_195373.6 UniGene:At.31319 ProteinModelPortal:O23225
SMR:O23225 GeneID:829807 KEGG:ath:AT4G36550 TAIR:At4g36550
eggNOG:NOG316001 HOGENOM:HOG000241850 InParanoid:O23225 OMA:CERIRDS
ArrayExpress:O23225 Genevestigator:O23225 Uniprot:O23225
Length = 718
Score = 140 (54.3 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 32/75 (42%), Positives = 43/75 (57%)
Query: 230 LYETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNT 289
L E F C L++ +M DPV I SG T+ER I WF++ G+ CP + +KL L
Sbjct: 219 LPEKFKCTLSRTVMYDPVIISSGNTFERMQIQKWFDE----GNDSCPISKRKLDDFTLKP 274
Query: 290 NVALKTTIEEWKDRN 304
NV LK+ I EW +N
Sbjct: 275 NVELKSQISEWCAKN 289
Score = 53 (23.7 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 24/87 (27%), Positives = 37/87 (42%)
Query: 328 AIKDLQTVCQRK-QYNKVQVRNV-GVLPLLTKLLEYKDRNVRCAAMELLRQLV-VEDD-E 383
AI L +C +K +Y + VR + L + V+ +A ELLR LV V+ D E
Sbjct: 604 AISILLQLCVQKIEYCCLVVREATDIYSSLILISNNGTEEVKVSASELLRALVEVDSDKE 663
Query: 384 GKEMIAETMDXXXXXXXXXXXHRPVRH 410
+E ++ + PV H
Sbjct: 664 EEEEVSSRPEGRTTASPTSQVVTPVTH 690
Score = 43 (20.2 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 12/54 (22%), Positives = 24/54 (44%)
Query: 454 EIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLG 507
++ + + E + + M+ + LEPL+ +L +E GEI+ G
Sbjct: 394 KVVEDVRSRFEHSTRAFRSMSPSKFLEPLITYLKNA-----LERNGTAGEIIKG 442
Score = 40 (19.1 bits), Expect = 0.00036, Sum P(3) = 0.00036
Identities = 16/69 (23%), Positives = 34/69 (49%)
Query: 321 SDRMVLEAIKDLQTVCQRKQYNKVQVRNVGVLPLLTKLLEYKDRNVRCAAMELLRQLVVE 380
S+ + EA+ L+ V + ++ + G L L K++E + +++ AM L+ L
Sbjct: 475 SEVVAEEALNILE-VLSNHPHGPSKITSSGSLSSLLKIVESQAEHLQEQAMITLKNLSSS 533
Query: 381 DDEGKEMIA 389
+ EM++
Sbjct: 534 MEICLEMVS 542
Score = 38 (18.4 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 6/29 (20%), Positives = 17/29 (58%)
Query: 615 VYNIIYMLKNSTPDELNVHLIRILQCLTK 643
+Y+ + ++ N+ +E+ V +L+ L +
Sbjct: 629 IYSSLILISNNGTEEVKVSASELLRALVE 657
>TAIR|locus:2098816 [details] [associations]
symbol:AT3G61390 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0016567 "protein ubiquitination"
evidence=IEA] InterPro:IPR003613 Pfam:PF04564 SMART:SM00504
UniPathway:UPA00143 EMBL:CP002686 GenomeReviews:BA000014_GR
EMBL:AL132962 EMBL:AL137898 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 Gene3D:3.40.50.620 InterPro:IPR014729 GO:GO:0000151
HSSP:Q8VZ40 EMBL:AK117154 EMBL:BT005367 IPI:IPI00525308 PIR:T47931
RefSeq:NP_191698.2 UniGene:At.34291 ProteinModelPortal:Q8GZ84
SMR:Q8GZ84 EnsemblPlants:AT3G61390.2 GeneID:825311
KEGG:ath:AT3G61390 TAIR:At3g61390 eggNOG:NOG327619
HOGENOM:HOG000115794 InParanoid:Q8GZ84 OMA:QITESYT PhylomeDB:Q8GZ84
ProtClustDB:CLSN2680474 Genevestigator:Q8GZ84 Uniprot:Q8GZ84
Length = 435
Score = 140 (54.3 bits), Expect = 5.8e-06, P = 5.8e-06
Identities = 32/73 (43%), Positives = 42/73 (57%)
Query: 229 PLYETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEK-FETSGDIFCPTTGKKLMSRGL 287
P Y F CP+T +IM+DP G TYE AI+ WFE+ ETS P K+L L
Sbjct: 354 PQY--FICPITHDIMEDPHVAADGFTYEGEAISRWFERGHETS-----PMINKRLPHTSL 406
Query: 288 NTNVALKTTIEEW 300
N+AL++ I+EW
Sbjct: 407 VPNLALRSAIQEW 419
>TAIR|locus:2013850 [details] [associations]
symbol:CMPG1 ""CYS, MET, PRO, and GLY protein 1""
species:3702 "Arabidopsis thaliana" [GO:0004842 "ubiquitin-protein
ligase activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0016567 "protein ubiquitination" evidence=IEA]
[GO:0010200 "response to chitin" evidence=IEP;RCA] [GO:0002679
"respiratory burst involved in defense response" evidence=RCA]
[GO:0015824 "proline transport" evidence=RCA] [GO:0035556
"intracellular signal transduction" evidence=RCA]
InterPro:IPR003613 InterPro:IPR016024 Pfam:PF04564 SMART:SM00504
UniPathway:UPA00143 EMBL:CP002684 GenomeReviews:CT485782_GR
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:AC026480
GO:GO:0010200 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842
GO:GO:0000151 UniGene:At.23473 HSSP:Q8VZ40 EMBL:AY034913
EMBL:AY063104 EMBL:AY087421 IPI:IPI00524256 PIR:D96686
RefSeq:NP_564866.1 UniGene:At.71474 ProteinModelPortal:Q9C8D1
SMR:Q9C8D1 STRING:Q9C8D1 EnsemblPlants:AT1G66160.1 GeneID:842931
KEGG:ath:AT1G66160 TAIR:At1g66160 eggNOG:NOG283749
HOGENOM:HOG000238505 InParanoid:Q9C8D1 OMA:AFSENAN PhylomeDB:Q9C8D1
ProtClustDB:CLSN2689039 Genevestigator:Q9C8D1 Uniprot:Q9C8D1
Length = 431
Score = 138 (53.6 bits), Expect = 9.3e-06, P = 9.3e-06
Identities = 42/138 (30%), Positives = 63/138 (45%)
Query: 234 FYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVAL 293
F CP++ E+M DPV I SG+TY+R I WFE SG CP T L S N +
Sbjct: 37 FQCPISYELMKDPVIIASGITYDRENIEKWFE----SGYQTCPVTNTVLTSLEQIPNHTI 92
Query: 294 KTTIEEWKDRN---DAERIKVSRAALSLAGSDRMVLEAIKDLQTVCQRKQYNKVQVRNVG 350
+ I+ W + ERI R ++ V E + L +R Y +
Sbjct: 93 RRMIQGWCGSSLGGGIERIPTPRVPVT----SHQVSEICERLSAATRRGDYAAC----ME 144
Query: 351 VLPLLTKLLEYKDRNVRC 368
++ +T+L + +RN +C
Sbjct: 145 MVTKMTRLGKESERNRKC 162
>TAIR|locus:2047605 [details] [associations]
symbol:AT2G19410 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004672
"protein kinase activity" evidence=IEA] [GO:0004674 "protein
serine/threonine kinase activity" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005886 "plasma membrane" evidence=ISM]
[GO:0006468 "protein phosphorylation" evidence=IEA] [GO:0016301
"kinase activity" evidence=ISS] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0016772 "transferase activity,
transferring phosphorus-containing groups" evidence=IEA]
InterPro:IPR000719 InterPro:IPR003613 InterPro:IPR008271
InterPro:IPR011009 InterPro:IPR017441 Pfam:PF00069 Pfam:PF04564
PROSITE:PS00107 PROSITE:PS00108 PROSITE:PS50011 SMART:SM00504
UniPathway:UPA00143 GO:GO:0005524 EMBL:CP002685
GenomeReviews:CT485783_GR eggNOG:COG0515 SUPFAM:SSF56112
GO:GO:0004674 HSSP:P36897 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 GO:GO:0000151 EMBL:AC003058 HOGENOM:HOG000237993
IPI:IPI00517039 PIR:T01289 RefSeq:NP_179531.1 UniGene:At.52830
ProteinModelPortal:Q8S8S7 SMR:Q8S8S7 PRIDE:Q8S8S7
EnsemblPlants:AT2G19410.1 GeneID:816460 KEGG:ath:AT2G19410
GeneFarm:2021 TAIR:At2g19410 InParanoid:Q8S8S7 OMA:VETANSK
PhylomeDB:Q8S8S7 ProtClustDB:CLSN2683172 Genevestigator:Q8S8S7
Uniprot:Q8S8S7
Length = 801
Score = 140 (54.3 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 29/70 (41%), Positives = 39/70 (55%)
Query: 234 FYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVAL 293
++CP+ +EIM++P G TYER AI AW EK S P T +KL L N L
Sbjct: 729 YFCPILREIMEEPEIAADGFTYERKAILAWLEKHNIS-----PVTRQKLDHFKLTPNHTL 783
Query: 294 KTTIEEWKDR 303
++ I +WK R
Sbjct: 784 RSAIRDWKSR 793
>TAIR|locus:2152049 [details] [associations]
symbol:AT5G65920 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0016567 "protein ubiquitination"
evidence=IEA] InterPro:IPR003613 InterPro:IPR016024 Pfam:PF04564
PROSITE:PS50176 SMART:SM00504 UniPathway:UPA00143 EMBL:CP002688
GenomeReviews:BA000015_GR EMBL:AL021684 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151 EMBL:AB018108
HSSP:Q8VZ40 HOGENOM:HOG000077474 ProtClustDB:CLSN2686657
EMBL:AY062476 EMBL:AY093259 IPI:IPI00534056 PIR:T05882
RefSeq:NP_201393.1 UniGene:At.27331 UniGene:At.74058
ProteinModelPortal:Q9FHN9 SMR:Q9FHN9 EnsemblPlants:AT5G65920.1
GeneID:836721 KEGG:ath:AT5G65920 TAIR:At5g65920 eggNOG:NOG268350
InParanoid:Q9FHN9 OMA:CKLASEE PhylomeDB:Q9FHN9
Genevestigator:Q9FHN9 Uniprot:Q9FHN9
Length = 444
Score = 127 (49.8 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 45/159 (28%), Positives = 71/159 (44%)
Query: 234 FYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVAL 293
F CP++ E M DPVT+ +G TYER+ I WF G CPTT ++L + N L
Sbjct: 64 FICPISLEPMQDPVTLCTGQTYERSNILKWFN----IGHCTCPTTMQELWDDLVTPNKTL 119
Query: 294 KTTIEEWKDRNDAERIK----VSRAALSLAGSDRMV-----LEAIKDLQTVCQRKQYNKV 344
I W + K V A+ + G+ R + A+ +L+ V K
Sbjct: 120 HQLIYTWFSQKYVLMKKRSEDVQGRAIEILGTLRKAKGKAKVHALSELKQVVMAHAIAKK 179
Query: 345 QVRNVGVLPLLTKLLE-YKDRNVRCAAMELLRQLVVEDD 382
V + G + +++ LL + V A+ +L L ++ D
Sbjct: 180 TVVDEGGVFVISSLLSPFTSHAVGSEAIAILVNLELDSD 218
Score = 55 (24.4 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 27/123 (21%), Positives = 57/123 (46%)
Query: 885 LIDAKAVDRLLACLYHENVEVVEAALSALCTLLDEKVDVDKSVSMLSEVNAIQHVLNVVK 944
L+ AV +L+ L +VE +E+AL L +L E + +++ VN I H + ++
Sbjct: 307 LVRIGAVPQLVDVLPCLDVECLESALFVLDSLCLES---EGRIALKDSVNTIPHTVRLLM 363
Query: 945 EHRQEVLQQ--KSFWMIERFLVKGGNKQASDISQDRLLPATLVSAFHHG-DVNTRQMAEK 1001
+ ++ W + K +++ S ++ + L A L+ G D +Q + +
Sbjct: 364 KVSEKCTNYAISILWSV----CKLASEECSSLAVEVGLAAKLLLVIQSGCDPALKQRSAE 419
Query: 1002 ILR 1004
+L+
Sbjct: 420 LLK 422
Score = 39 (18.8 bits), Expect = 0.00083, Sum P(2) = 0.00083
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 743 LSARNVVPTILQTINLIQRSGTRTSRYASAYL 774
++ ++ V TI T+ L+ + + + YA + L
Sbjct: 346 IALKDSVNTIPHTVRLLMKVSEKCTNYAISIL 377
>TAIR|locus:2173742 [details] [associations]
symbol:AT5G40140 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0016567 "protein ubiquitination"
evidence=IEA] InterPro:IPR000225 InterPro:IPR003613
InterPro:IPR016024 Pfam:PF00514 Pfam:PF04564 PROSITE:PS50176
SMART:SM00185 SMART:SM00504 UniPathway:UPA00143 EMBL:CP002688
GenomeReviews:BA000015_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 GO:GO:0000151 EMBL:AB010699 HSSP:Q8VZ40
eggNOG:NOG286330 HOGENOM:HOG000239874 IPI:IPI00517649
RefSeq:NP_198830.1 UniGene:At.55272 ProteinModelPortal:Q9FL17
SMR:Q9FL17 PRIDE:Q9FL17 EnsemblPlants:AT5G40140.1 GeneID:834011
KEGG:ath:AT5G40140 TAIR:At5g40140 InParanoid:Q9FL17 OMA:VLLILCN
Genevestigator:Q9FL17 Uniprot:Q9FL17
Length = 550
Score = 94 (38.1 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 24/70 (34%), Positives = 37/70 (52%)
Query: 234 FYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVAL 293
F CP++ +M DP+ + SG +YER + A +T G F PT + + N+AL
Sbjct: 62 FLCPISGSLMADPIIVSSGHSYERACVIAC----KTLG--FTPTPPPDFST--VIPNLAL 113
Query: 294 KTTIEEWKDR 303
K+ I W +R
Sbjct: 114 KSAIHSWCER 123
Score = 91 (37.1 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 31/107 (28%), Positives = 50/107 (46%)
Query: 459 ILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDSK--INVPG 516
+L NL N + +G++ PL+ L GS E Q A + + L ++K I V G
Sbjct: 293 VLVNLSLEKSNKVKIVRSGIVPPLIDVLKCGSVEAQEHSAGVIFSLALEDENKTAIGVLG 352
Query: 517 RAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIVQVM 563
L+ ++ G LTR + AL +S + LV+ G VQ++
Sbjct: 353 -GLEPLLHLIRVGTELTRHDSALALYHLSLVQSNRGKLVKLGAVQML 398
>TAIR|locus:2146198 [details] [associations]
symbol:AT5G18330 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005886
"plasma membrane" evidence=ISM] [GO:0016567 "protein
ubiquitination" evidence=IEA] InterPro:IPR003613 InterPro:IPR016024
Pfam:PF04564 SMART:SM00504 UniPathway:UPA00143 EMBL:CP002688
GenomeReviews:BA000015_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 GO:GO:0000151 EMBL:AC051626 HOGENOM:HOG000238412
ProtClustDB:CLSN2686550 IPI:IPI00538442 RefSeq:NP_197334.1
UniGene:At.54898 ProteinModelPortal:Q3E9F6 SMR:Q3E9F6
EnsemblPlants:AT5G18330.1 GeneID:831951 KEGG:ath:AT5G18330
TAIR:At5g18330 eggNOG:NOG311548 InParanoid:Q3E9F6 OMA:HERTCPR
PhylomeDB:Q3E9F6 Genevestigator:Q3E9F6 Uniprot:Q3E9F6
Length = 445
Score = 110 (43.8 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
Identities = 31/103 (30%), Positives = 50/103 (48%)
Query: 234 FYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVAL 293
F C L+ +IM +P+ I SG T+E++ I W + T CP T + L R + N +
Sbjct: 69 FICTLSNKIMIEPMLIASGQTFEKSYILEWLKHERT-----CPRTKQVLYHRFMIPNHLI 123
Query: 294 KTTIEEWKDRNDAERIKVSRAALSLAGSD-RMVLEAIKDLQTV 335
I+EW ++ +R K S + L D +L+ I +V
Sbjct: 124 NEVIKEWCLIHNFDRPKTSDEVIDLFTGDLESLLQRISSPSSV 166
Score = 72 (30.4 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
Identities = 32/144 (22%), Positives = 63/144 (43%)
Query: 429 IGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLE---RNPDNIKCMAENGLLEPLM-H 484
+ IP I L+T + S D E + I+ L + N +AEN L+ PL+
Sbjct: 191 VAKIPDSITRLLT-PLSISEDS-NPEFLENIVTALHIFSTSEKNKTLVAENPLVLPLLAK 248
Query: 485 HLNEGSEEIQMEMASYLGEIVLGHDSKINVPG-RAASTLIRMVHSGNSLTRRIAFKALMQ 543
++ +G+ ++ A+ + + +KI + LI ++ G+SL AF AL
Sbjct: 249 YMKQGTVLTRIHSAATVNSLSYTDSNKIIIGNSEVLKALIHVIEEGDSLATSEAFSALSN 308
Query: 544 ISSHHPSCKILVEAGIVQVMAEEM 567
+ + V G+++ +++
Sbjct: 309 LCPVKEISEKAVSEGLIRAAIKKI 332
Score = 41 (19.5 bits), Expect = 2.7e-05, Sum P(3) = 2.7e-05
Identities = 14/54 (25%), Positives = 28/54 (51%)
Query: 894 LLACLYHENVEVVEAALSALCTLLDEKVDVDKSVSMLSEVNAIQHVLNVVKEHR 947
LLA + +N + E + L + D + S S++++ NA+ V N+ K ++
Sbjct: 344 LLAFVSTQNHQTTEE-MDNLGLIYDLFSILRNSNSLVNDENAVVIVYNICKSYK 396
>TAIR|locus:2097390 [details] [associations]
symbol:AT3G49810 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0016567 "protein ubiquitination"
evidence=IEA] InterPro:IPR003613 InterPro:IPR016024 Pfam:PF04564
PROSITE:PS50176 SMART:SM00504 UniPathway:UPA00143 EMBL:CP002686
GenomeReviews:BA000014_GR EMBL:AL132965 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151 EMBL:BT029174
EMBL:AY084697 IPI:IPI00522796 PIR:T46047 RefSeq:NP_566927.1
UniGene:At.43608 UniGene:At.71195 ProteinModelPortal:Q058P4
SMR:Q058P4 IntAct:Q058P4 PRIDE:Q058P4 EnsemblPlants:AT3G49810.1
GeneID:824143 KEGG:ath:AT3G49810 TAIR:At3g49810 eggNOG:NOG289804
HOGENOM:HOG000077474 InParanoid:Q058P4 OMA:ELRKMMD PhylomeDB:Q058P4
ProtClustDB:CLSN2686657 Genevestigator:Q058P4 Uniprot:Q058P4
Length = 448
Score = 119 (46.9 bits), Expect = 4.6e-05, Sum P(3) = 4.6e-05
Identities = 27/74 (36%), Positives = 38/74 (51%)
Query: 227 IEPLYETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRG 286
++ + F CP++ E M DPVT+ +G TYER I WF G + CPTT ++L
Sbjct: 61 LQDIPSVFICPISLEPMQDPVTLCTGQTYERLNIHKWFNL----GHLTCPTTMQELWDDT 116
Query: 287 LNTNVALKTTIEEW 300
+ N L I W
Sbjct: 117 VTPNKTLHHLIYTW 130
Score = 54 (24.1 bits), Expect = 4.6e-05, Sum P(3) = 4.6e-05
Identities = 27/135 (20%), Positives = 58/135 (42%)
Query: 434 GGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEI 493
GG+ V+ + ++ +E+ IL +L+ + D+ + + + ++ LN+GS E
Sbjct: 189 GGVSVISSLLGPFTSHAVGSEVV-AILVSLDLDSDSKSGLMQPAKVSLIVDMLNDGSNET 247
Query: 494 QMEMASYLGEIV--LGHDSKINVPGRAASTLIRMVHSGNSLTR-RIAFKALMQISSHHPS 550
++ A + +V G +++ L+R+V A + L IS H
Sbjct: 248 KINCARLIRGLVEEKGFRAELVSSHSLLVGLMRLVKDKRHRNGVSPALRLLKPISVHKQV 307
Query: 551 CKILVEAGIVQVMAE 565
++V G V + +
Sbjct: 308 RSLMVSIGAVPQLVD 322
Score = 47 (21.6 bits), Expect = 4.6e-05, Sum P(3) = 4.6e-05
Identities = 27/117 (23%), Positives = 49/117 (41%)
Query: 891 VDRLLACLYHENVEVVEAALSALCTLLDEKVDVDKSVSMLSEVNAIQHVLNVVKEHRQEV 950
VD +L L E +E+ L ALCT DV+ V++ N I + + V+ +
Sbjct: 321 VD-ILPSLDPECLELALFVLDALCT------DVEGRVAVKDSANTIPYTVRVLMRVSENC 373
Query: 951 LQQ--KSFWMIERFLVKGGNKQASDISQDRLLPATLVSAFHHG-DVNTRQMAEKILR 1004
W + K ++ S ++ + L A L+ G D +Q + ++L+
Sbjct: 374 TNYALSILWSV----CKLAPEECSPLAVEVGLAAKLLLVIQSGCDAALKQRSAELLK 426
>TAIR|locus:2176177 [details] [associations]
symbol:AT5G51270 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004672
"protein kinase activity" evidence=IEA] [GO:0004674 "protein
serine/threonine kinase activity" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006468 "protein phosphorylation" evidence=IEA] [GO:0016301
"kinase activity" evidence=ISS] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0016772 "transferase activity,
transferring phosphorus-containing groups" evidence=IEA]
InterPro:IPR000719 InterPro:IPR003613 InterPro:IPR008271
InterPro:IPR011009 InterPro:IPR017441 Pfam:PF00069 Pfam:PF04564
PROSITE:PS00107 PROSITE:PS00108 PROSITE:PS50011 SMART:SM00504
UniPathway:UPA00143 GO:GO:0005524 EMBL:CP002688
GenomeReviews:BA000015_GR eggNOG:COG0515 SUPFAM:SSF56112
GO:GO:0004674 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842
Gene3D:3.40.50.620 InterPro:IPR014729 GO:GO:0000151 EMBL:AB023044
HSSP:Q9WUD1 HOGENOM:HOG000237993 IPI:IPI00525770 RefSeq:NP_199940.1
UniGene:At.55484 ProteinModelPortal:Q9LU47 SMR:Q9LU47 PRIDE:Q9LU47
EnsemblPlants:AT5G51270.1 GeneID:835201 KEGG:ath:AT5G51270
GeneFarm:2016 TAIR:At5g51270 InParanoid:Q9LU47 OMA:ATHEAKE
PhylomeDB:Q9LU47 ProtClustDB:CLSN2916710 Genevestigator:Q9LU47
Uniprot:Q9LU47
Length = 819
Score = 134 (52.2 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 28/71 (39%), Positives = 36/71 (50%)
Query: 234 FYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVAL 293
F+CPL K++M +P G TY+R AI W E TS P T L + L N L
Sbjct: 753 FFCPLLKDVMKEPCIAADGYTYDRRAIEEWMENHRTS-----PVTNSPLQNVNLLPNHTL 807
Query: 294 KTTIEEWKDRN 304
I EW++RN
Sbjct: 808 YAAIVEWRNRN 818
>TAIR|locus:2039265 [details] [associations]
symbol:PUB23 "plant U-box 23" species:3702 "Arabidopsis
thaliana" [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA;IGI;IDA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0016567 "protein ubiquitination" evidence=IEA;IDA] [GO:0010200
"response to chitin" evidence=IEP;RCA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0009414 "response to water deprivation"
evidence=IMP] [GO:0002679 "respiratory burst involved in defense
response" evidence=IGI;RCA] [GO:0006952 "defense response"
evidence=IGI] [GO:0051865 "protein autoubiquitination"
evidence=IDA] [GO:0000165 "MAPK cascade" evidence=RCA] [GO:0006612
"protein targeting to membrane" evidence=RCA] [GO:0006944 "cellular
membrane fusion" evidence=RCA] [GO:0009862 "systemic acquired
resistance, salicylic acid mediated signaling pathway"
evidence=RCA] [GO:0009867 "jasmonic acid mediated signaling
pathway" evidence=RCA] [GO:0010310 "regulation of hydrogen peroxide
metabolic process" evidence=RCA] [GO:0010363 "regulation of
plant-type hypersensitive response" evidence=RCA] [GO:0031348
"negative regulation of defense response" evidence=RCA] [GO:0035556
"intracellular signal transduction" evidence=RCA] [GO:0042742
"defense response to bacterium" evidence=RCA] [GO:0043069 "negative
regulation of programmed cell death" evidence=RCA] [GO:0050832
"defense response to fungus" evidence=RCA] InterPro:IPR003613
InterPro:IPR016024 Pfam:PF04564 PROSITE:PS50176 SMART:SM00504
UniPathway:UPA00143 GO:GO:0005829 EMBL:CP002685
GenomeReviews:CT485783_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0009414 GO:GO:0010200 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151 GO:GO:0051865
EMBL:AC007017 GO:GO:0002679 HSSP:Q8VZ40 HOGENOM:HOG000238505
eggNOG:NOG331697 ProtClustDB:CLSN2684770 EMBL:BT005829
EMBL:AK227343 IPI:IPI00548709 PIR:G84774 RefSeq:NP_181137.2
UniGene:At.43241 ProteinModelPortal:Q84TG3 SMR:Q84TG3 IntAct:Q84TG3
STRING:Q84TG3 PRIDE:Q84TG3 EnsemblPlants:AT2G35930.1 GeneID:818166
KEGG:ath:AT2G35930 TAIR:At2g35930 InParanoid:Q84TG3 OMA:RLHARAW
PhylomeDB:Q84TG3 Genevestigator:Q84TG3 Uniprot:Q84TG3
Length = 411
Score = 138 (53.6 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
Identities = 42/175 (24%), Positives = 76/175 (43%)
Query: 234 FYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVAL 293
F CP++ EIM DPV + +G+TY+R++I W + + CP T + + L N L
Sbjct: 16 FLCPISLEIMKDPVIVSTGITYDRDSIEKWLFAGKKNS---CPVTKQDITDADLTPNHTL 72
Query: 294 KTTIEEWKDRNDA---ERIKVSRAALSLAGSDRMV----------LEAIKDLQTVCQRKQ 340
+ I+ W N + ERI R + + ++++ ++ +K L+ +
Sbjct: 73 RRLIQSWCTLNASYGVERIPTPRPPICKSEIEKLIRDSASSHENQVKCLKRLRQIVSENA 132
Query: 341 YNKVQVRNVGVLPLLTKLLEYKDRN--VRCAAMELLRQLVVEDDEGKEMIAETMD 393
NK + GV L ++ N + A+ LL L + K ++ D
Sbjct: 133 TNKRCLEAAGVPEFLANIVSNDSENGSLTDEALNLLYHLETSETVLKNLLNNKKD 187
Score = 37 (18.1 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
Identities = 22/119 (18%), Positives = 50/119 (42%)
Query: 450 VFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHD 509
++ E ++ +L+NL N +N +++ L + G E ++ L I+ D
Sbjct: 168 LYHLETSETVLKNLLNNKK------DNNIVKSLTKIMQRGMYESRVYATLLLKNILEVAD 221
Query: 510 --SKINVPGRAASTLIRMVHSGNSL-TRRIAFKALMQISSHHPSCKILVEAGIVQVMAE 565
+ + + +++++ S + A L+ I + VEAG++ V+ E
Sbjct: 222 PMQSMTLKPEVFTEVVQILDDRISQKATKAAMHILVNICPWGRNRHKAVEAGVISVIIE 280
>TAIR|locus:2169861 [details] [associations]
symbol:AT5G37490 species:3702 "Arabidopsis thaliana"
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0010200 "response to chitin"
evidence=IEP;RCA] [GO:0002679 "respiratory burst involved in
defense response" evidence=RCA] [GO:0009693 "ethylene biosynthetic
process" evidence=RCA] [GO:0035556 "intracellular signal
transduction" evidence=RCA] InterPro:IPR003613 InterPro:IPR016024
Pfam:PF04564 PROSITE:PS50176 SMART:SM00504 UniPathway:UPA00143
EMBL:CP002688 GenomeReviews:BA000015_GR SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0010200
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151
EMBL:AB025630 HSSP:Q8VZ40 HOGENOM:HOG000238505 EMBL:BT020311
EMBL:BT020439 IPI:IPI00541809 RefSeq:NP_198565.1 UniGene:At.30484
ProteinModelPortal:Q5PNY6 SMR:Q5PNY6 STRING:Q5PNY6 PRIDE:Q5PNY6
EnsemblPlants:AT5G37490.1 GeneID:833727 KEGG:ath:AT5G37490
TAIR:At5g37490 eggNOG:NOG287305 InParanoid:Q5PNY6 OMA:HAPLRHE
PhylomeDB:Q5PNY6 ProtClustDB:CLSN2916550 Genevestigator:Q5PNY6
Uniprot:Q5PNY6
Length = 435
Score = 130 (50.8 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 39/138 (28%), Positives = 63/138 (45%)
Query: 234 FYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVAL 293
F CP++ ++M DPV I +G+TY+R +I W SG+ CP T L + N +
Sbjct: 35 FQCPISIDLMKDPVIISTGITYDRVSIETWIN----SGNKTCPVTNTVLTTFDQIPNHTI 90
Query: 294 KTTIEEW---KDRNDAERIKVSRAALSLAGSDRMVLEAIKDLQTVCQRKQYNKVQVRNVG 350
+ I+ W K +RI R L V E + L + +R Y K V
Sbjct: 91 RKMIQGWCVEKGSPLIQRIPTPRVPLMPCE----VYEISRKLSSATRRGDYEKCGV---- 142
Query: 351 VLPLLTKLLEYKDRNVRC 368
++ + KL + ++N +C
Sbjct: 143 IIEKIKKLGDESEKNRKC 160
>RGD|1359296 [details] [associations]
symbol:Wdsub1 "WD repeat, sterile alpha motif and U-box domain
containing 1" species:10116 "Rattus norvegicus" [GO:0000151
"ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA]
InterPro:IPR017986 InterPro:IPR001660 InterPro:IPR001680
InterPro:IPR003613 InterPro:IPR011510 InterPro:IPR015943
Pfam:PF00400 Pfam:PF04564 Pfam:PF07647 PROSITE:PS50082
PROSITE:PS50105 PROSITE:PS50294 SMART:SM00320 SMART:SM00454
SMART:SM00504 RGD:1359296 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 InterPro:IPR019775 eggNOG:COG2319
InterPro:IPR020472 PRINTS:PR00320 Gene3D:3.30.40.10
InterPro:IPR013083 Gene3D:1.10.150.50 InterPro:IPR013761
SUPFAM:SSF47769 GO:GO:0004842 GeneTree:ENSGT00700000104017
GO:GO:0000151 HSSP:Q8VZ40 HOGENOM:HOG000231980 HOVERGEN:HBG080511
OrthoDB:EOG4NCMCJ CTD:151525 OMA:HCCCFSP EMBL:BC089856
IPI:IPI00391796 RefSeq:NP_001014201.1 UniGene:Rn.101918
ProteinModelPortal:Q5FVN8 PRIDE:Q5FVN8 Ensembl:ENSRNOT00000008168
GeneID:362137 KEGG:rno:362137 UCSC:RGD:1359296 InParanoid:Q5FVN8
NextBio:678784 ArrayExpress:Q5FVN8 Genevestigator:Q5FVN8
Uniprot:Q5FVN8
Length = 476
Score = 122 (48.0 bits), Expect = 8.3e-05, Sum P(2) = 8.3e-05
Identities = 26/69 (37%), Positives = 35/69 (50%)
Query: 232 ETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNV 291
+ F CP+T+E+M DPV G +YER A+ +W K + + P T L S L N
Sbjct: 406 DEFICPITRELMKDPVIASDGYSYEREAMESWIHKKKRTS----PMTNLALPSLVLTPNR 461
Query: 292 ALKTTIEEW 300
LK I W
Sbjct: 462 TLKMAINRW 470
Score = 55 (24.4 bits), Expect = 8.3e-05, Sum P(2) = 8.3e-05
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 52 ELQTTKYTPANALEILQSLSKSISL-GKDLVAKCKR---GDHSMSDAELRSTMLQLLGVI 107
E +K+ A LE L + ++ ++ GK+L+ K GD + LRS +L+ + +
Sbjct: 334 EEDVSKWLRAQGLEDLVDIFRTNNIDGKELLHLTKESLAGDMKIESLGLRSKVLRSIDEL 393
Query: 108 RRMGECLS 115
R E LS
Sbjct: 394 RTRMESLS 401
>TAIR|locus:2012136 [details] [associations]
symbol:PUB26 "plant U-box 26" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0016567 "protein
ubiquitination" evidence=IEA] InterPro:IPR003613 InterPro:IPR016024
Pfam:PF04564 SMART:SM00504 UniPathway:UPA00143 EMBL:CP002684
GenomeReviews:CT485782_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 GO:GO:0000151 EMBL:AC011807 HSSP:Q8VZ40
HOGENOM:HOG000238505 eggNOG:NOG262907 ProtClustDB:CLSN2682687
EMBL:AK118346 EMBL:BT029013 IPI:IPI00542667 PIR:E96534
RefSeq:NP_175400.1 UniGene:At.38168 ProteinModelPortal:Q9FXA4
SMR:Q9FXA4 EnsemblPlants:AT1G49780.1 GeneID:841401
KEGG:ath:AT1G49780 TAIR:At1g49780 InParanoid:Q9FXA4 OMA:CTERAKR
PhylomeDB:Q9FXA4 Genevestigator:Q9FXA4 Uniprot:Q9FXA4
Length = 421
Score = 134 (52.2 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 48/162 (29%), Positives = 76/162 (46%)
Query: 234 FYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVAL 293
F CP++ ++M DPVTI +G TY+R +I +W G+ CP T L L N L
Sbjct: 18 FRCPISLDLMSDPVTISTGQTYDRTSIDSWI----AMGNTTCPVTRVALSDFTLIPNHTL 73
Query: 294 KTTIEEW--KDR-NDAERIK--------VS-RAALSLAG-------SDRMVLEAIKDLQT 334
+ I+EW +R N ERI +S R+ LS A S R AI+ L+
Sbjct: 74 RRLIQEWCVANRSNGVERIPTPKQPADPISVRSLLSQASAITGTHVSVRSRAAAIRRLRG 133
Query: 335 VCQRKQYNKVQVRNVGVLPLLTKLLEYKDRNVRCAAMELLRQ 376
+ + + N+V + +L ++L + D + EL+ +
Sbjct: 134 LARDSEKNRVLIAGHNAREILVRIL-FADIETTSLSSELVSE 174
Score = 41 (19.5 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 426 CEKIGSIPG--GILVLITFKFNWSIDVFAAEIADQIL 460
CE + S P G + + F + I V AA + + +L
Sbjct: 189 CEAVASDPSRVGFMTRLLFDSSIEIRVNAAALIEMVL 225
Score = 38 (18.4 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 6/16 (37%), Positives = 12/16 (75%)
Query: 618 IIYMLKNSTPDELNVH 633
++ +L++S PD+ VH
Sbjct: 394 LLKLLRDSWPDDSTVH 409
>TAIR|locus:2141226 [details] [associations]
symbol:PUB8 "plant U-box 8" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005871 "kinesin complex"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016567 "protein ubiquitination" evidence=IEA;NAS] [GO:0019894
"kinesin binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000225 InterPro:IPR003613 InterPro:IPR016024
Pfam:PF04564 PROSITE:PS50176 SMART:SM00184 SMART:SM00185
SMART:SM00504 UniPathway:UPA00143 EMBL:CP002687
GenomeReviews:CT486007_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 EMBL:AL161554 GO:GO:0008270 GO:GO:0016567
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151
EMBL:EF637083 EMBL:AL031187 EMBL:EF182720 HSSP:Q8VZ40
IPI:IPI00526364 PIR:T05177 RefSeq:NP_193866.1 UniGene:At.65012
ProteinModelPortal:O81902 SMR:O81902 PaxDb:O81902
EnsemblPlants:AT4G21350.1 GeneID:827885 KEGG:ath:AT4G21350
TAIR:At4g21350 eggNOG:NOG271823 HOGENOM:HOG000272744
InParanoid:O81902 OMA:LCKLPEN PhylomeDB:O81902
ProtClustDB:CLSN2685551 ArrayExpress:O81902 Genevestigator:O81902
Uniprot:O81902
Length = 374
Score = 126 (49.4 bits), Expect = 0.00015, P = 0.00015
Identities = 72/312 (23%), Positives = 123/312 (39%)
Query: 234 FYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRG-LNTNVA 292
F CP++ EIM DPV ++SG T++R +I W + SG+ CP T L L N A
Sbjct: 9 FRCPISLEIMSDPVILQSGHTFDRVSIQQWID----SGNRTCPITKLPLSETPYLIPNHA 64
Query: 293 LKTTI---------EEWKDRNDAERIKVSRAAL-----SLAGSDRMVLEAIKDLQTVCQR 338
L++ I E + R E AL S + S+ LE++ L + +R
Sbjct: 65 LRSLILNFAHVSLKESSRPRTQQEHSHSQSQALISTLVSQSSSNASKLESLTRLVRLTKR 124
Query: 339 KQYNKVQVRNVGVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDXXXXX 398
+ +V G + ++ ++ ++ ++ LL L +EDD ++A+ +
Sbjct: 125 DSSIRRKVTESGAVRAALDCVDSCNQVLQEKSLSLLLNLSLEDDNKVGLVADGV-IRRIV 183
Query: 399 XXXXXXHRPVRHEXXXXXXXXXXXXXXCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQ 458
+ IGS P I L++ D E A
Sbjct: 184 TVLRVGSPDCKAIAATLLTSLAVVEVNKATIGSYPDAISALVSL-LRVGNDRERKESATA 242
Query: 459 ILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDSKINVPGRA 518
+ L PDN K + + G + L+ + G E +E+ L + G + V G
Sbjct: 243 LYA-LCSFPDNRKRVVDCGSVPILVEAADSGLERA-VEVLGLLVKCRGGREEMSKVSG-F 299
Query: 519 ASTLIRMVHSGN 530
L+ ++ +GN
Sbjct: 300 VEVLVNVLRNGN 311
>TAIR|locus:2079964 [details] [associations]
symbol:PUB22 "plant U-box 22" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA;IGI;IDA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0016567 "protein ubiquitination" evidence=IEA;IDA] [GO:0010200
"response to chitin" evidence=IEP;RCA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0009414 "response to water deprivation"
evidence=IMP] [GO:0002679 "respiratory burst involved in defense
response" evidence=IGI;RCA] [GO:0006952 "defense response"
evidence=IGI] [GO:0051865 "protein autoubiquitination"
evidence=IDA] [GO:0006865 "amino acid transport" evidence=RCA]
[GO:0015824 "proline transport" evidence=RCA] InterPro:IPR003613
InterPro:IPR016024 Pfam:PF04564 SMART:SM00504 UniPathway:UPA00143
GO:GO:0005829 EMBL:CP002686 GenomeReviews:BA000014_GR
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0009414
GO:GO:0010200 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842
GO:GO:0000151 GO:GO:0051865 EMBL:AL050300 GO:GO:0002679 HSSP:Q8VZ40
HOGENOM:HOG000238505 EMBL:BT015763 EMBL:BT020203 EMBL:AK228993
IPI:IPI00521627 PIR:T08454 RefSeq:NP_190813.1 UniGene:At.35294
ProteinModelPortal:Q9SVC6 SMR:Q9SVC6 STRING:Q9SVC6
EnsemblPlants:AT3G52450.1 GeneID:824410 KEGG:ath:AT3G52450
TAIR:At3g52450 eggNOG:NOG331697 InParanoid:Q9SVC6 OMA:RNSEMAM
PhylomeDB:Q9SVC6 ProtClustDB:CLSN2684770 Genevestigator:Q9SVC6
Uniprot:Q9SVC6
Length = 435
Score = 127 (49.8 bits), Expect = 0.00015, P = 0.00015
Identities = 27/98 (27%), Positives = 50/98 (51%)
Query: 234 FYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVAL 293
F CP++ +IM DPV + +G+TY+R +I W + + CP T + + L N L
Sbjct: 11 FLCPISLDIMKDPVIVSTGITYDRESIEKWLFSGKKNS---CPVTKQVITETDLTPNHTL 67
Query: 294 KTTIEEWKDRNDA---ERIKVSRAALSLAGSDRMVLEA 328
+ I+ W N + ERI + + + ++++ E+
Sbjct: 68 RRLIQSWCTLNASYGIERIPTPKPPICKSEIEKLIKES 105
>TAIR|locus:2117343 [details] [associations]
symbol:AT4G25160 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004672
"protein kinase activity" evidence=IEA] [GO:0004674 "protein
serine/threonine kinase activity" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006468 "protein phosphorylation" evidence=IEA] [GO:0016301
"kinase activity" evidence=ISS] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0016772 "transferase activity,
transferring phosphorus-containing groups" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0002238 "response
to molecule of fungal origin" evidence=RCA] InterPro:IPR000719
InterPro:IPR001245 InterPro:IPR003613 InterPro:IPR006016
InterPro:IPR008271 InterPro:IPR011009 InterPro:IPR017441
Pfam:PF00582 Pfam:PF04564 Pfam:PF07714 PROSITE:PS00107
PROSITE:PS00108 PROSITE:PS50011 SMART:SM00504 UniPathway:UPA00143
GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006950
eggNOG:COG0515 SUPFAM:SSF56112 GO:GO:0004674 Gene3D:3.30.40.10
InterPro:IPR013083 EMBL:AL161562 GO:GO:0004842 EMBL:AL035523
Gene3D:3.40.50.620 InterPro:IPR014729 GO:GO:0000151 EMBL:AL035396
HSSP:Q8VZ40 HOGENOM:HOG000237993 EMBL:BX828107 IPI:IPI00540343
PIR:T05537 RefSeq:NP_194246.2 UniGene:At.32287
ProteinModelPortal:Q9SW11 SMR:Q9SW11 IntAct:Q9SW11 PaxDb:Q9SW11
PRIDE:Q9SW11 EnsemblPlants:AT4G25160.1 GeneID:828619
KEGG:ath:AT4G25160 GeneFarm:2015 TAIR:At4g25160 InParanoid:Q9SW11
OMA:FQQELEI PhylomeDB:Q9SW11 ProtClustDB:CLSN2918598
Genevestigator:Q9SW11 Uniprot:Q9SW11
Length = 835
Score = 130 (50.8 bits), Expect = 0.00018, P = 0.00018
Identities = 27/68 (39%), Positives = 37/68 (54%)
Query: 234 FYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVAL 293
F CPL K++M++P G TY+R+AI W ++ TS P T L S+ L N L
Sbjct: 770 FICPLLKDVMNEPCVAADGYTYDRHAIEEWLKEHNTS-----PMTDSPLHSKNLLPNYTL 824
Query: 294 KTTIEEWK 301
T I EW+
Sbjct: 825 YTAIMEWR 832
>TAIR|locus:2090604 [details] [associations]
symbol:PUB25 "plant U-box 25" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0010200 "response to chitin"
evidence=IEP] InterPro:IPR003613 InterPro:IPR016024 Pfam:PF04564
SMART:SM00504 UniPathway:UPA00143 EMBL:CP002686
GenomeReviews:BA000014_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0010200 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151 EMBL:AB025624
HSSP:Q8VZ40 HOGENOM:HOG000238505 EMBL:BT025982 EMBL:AY086503
EMBL:AK229923 IPI:IPI00525992 RefSeq:NP_566632.1 UniGene:At.5707
ProteinModelPortal:Q9LT79 SMR:Q9LT79 EnsemblPlants:AT3G19380.1
GeneID:821472 KEGG:ath:AT3G19380 TAIR:At3g19380 eggNOG:NOG262907
InParanoid:Q9LT79 OMA:ECTERAK PhylomeDB:Q9LT79
ProtClustDB:CLSN2682687 Genevestigator:Q9LT79 Uniprot:Q9LT79
Length = 421
Score = 123 (48.4 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 30/79 (37%), Positives = 42/79 (53%)
Query: 234 FYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVAL 293
F CP++ E+M DPVT+ +G TY+R +I +W + CP T L L N L
Sbjct: 18 FRCPISLELMQDPVTVCTGQTYDRASIESWVS---IGNNTTCPVTRAPLSDFTLIPNHTL 74
Query: 294 KTTIEEW--KDR-NDAERI 309
+ I+EW +R N ERI
Sbjct: 75 RRLIQEWCVANRSNGVERI 93
Score = 48 (22.0 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 26/140 (18%), Positives = 62/140 (44%)
Query: 436 ILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQM 495
IL+ I F S ++ + +A ++ + + ++ G +E L L + S E ++
Sbjct: 154 ILIKILFSETTSSELVSESLALLVMLPITEPNQFVSISSDPGRVEFLTRLLFDSSIETRV 213
Query: 496 EMASYLGEIVLGHDSKINVPGRAAST------LIRMVHSGNSLTR--RIAFKALMQISSH 547
A+ + EIV ++ G +++ ++ ++ + S R +I K L + S
Sbjct: 214 NAAALI-EIVSTGTKSADLKGSISNSESVFEGVLDLLRNPISSRRALKIGIKTLFALCSV 272
Query: 548 HPSCKILVEAGIVQVMAEEM 567
+ I + AG +++ + +
Sbjct: 273 KSTRHIAITAGAPEILIDRL 292
>UNIPROTKB|F1MIZ9 [details] [associations]
symbol:KPNA3 "Importin subunit alpha" species:9913 "Bos
taurus" [GO:0008022 "protein C-terminus binding" evidence=IEA]
[GO:0008565 "protein transporter activity" evidence=IEA]
[GO:0006606 "protein import into nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000225 InterPro:IPR002652 InterPro:IPR016024
InterPro:IPR024931 Pfam:PF00514 Pfam:PF01749 PIRSF:PIRSF005673
PROSITE:PS50176 PROSITE:PS51214 SMART:SM00185 GO:GO:0005634
GO:GO:0005737 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0008565 GO:GO:0006606 GeneTree:ENSGT00610000085856
OMA:TQGGTFN EMBL:DAAA02032915 IPI:IPI00697936
Ensembl:ENSBTAT00000006376 Uniprot:F1MIZ9
Length = 497
Score = 95 (38.5 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 27/122 (22%), Positives = 58/122 (47%)
Query: 885 LIDAKAVDRLLACLYHENVEVVEAALSALCTLLDEKVDVDKSVSMLSEVNAIQHVLNVVK 944
+ID+ V L+ L H+ V+V AAL A+ ++ D+ ++ + + H N++
Sbjct: 256 VIDSGVVPFLVPLLSHQEVKVQTAALRAVGNIV---TGTDEQTQVVLNCDVLSHFPNLLS 312
Query: 945 EHRQEVLQQKSFWMIERFLVKGGNKQASDISQDRLLPATLVSAFHHGDVNTRQMAEKILR 1004
H +E + +++ W + + G +Q + L+P ++ GD T++ A +
Sbjct: 313 -HPKEKINKEAVWFLSN-ITAGNQQQVQAVIDAGLIPM-IIHQLAKGDFGTQKEAAWAIS 369
Query: 1005 HL 1006
+L
Sbjct: 370 NL 371
Score = 79 (32.9 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 30/118 (25%), Positives = 56/118 (47%)
Query: 448 IDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLN-EGSEEIQMEMASYLGEIVL 506
+ + A + A ++L + +RNP I + ++G+L L+ L + + +Q E A L I
Sbjct: 63 VQLSAVQAARKLLSS-DRNPP-IDDLIKSGILPILVKCLERDDNPSLQFEAAWALTNIAS 120
Query: 507 GHDSKIN--VPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCK-ILVEAGIVQ 561
G ++ V A +R++HS + A AL I P C+ ++ G+V+
Sbjct: 121 GTSAQTQAVVQSNAVPLFLRLLHSPHQNVCEQAVWALGNIIGDGPQCRDYVISLGVVK 178
>UNIPROTKB|F1PV58 [details] [associations]
symbol:KPNA3 "Importin subunit alpha" species:9615 "Canis
lupus familiaris" [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0008565 "protein transporter activity"
evidence=IEA] [GO:0006606 "protein import into nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000225 InterPro:IPR002652
InterPro:IPR016024 InterPro:IPR024931 Pfam:PF00514 Pfam:PF01749
PIRSF:PIRSF005673 PROSITE:PS50176 PROSITE:PS51214 SMART:SM00185
GO:GO:0005634 GO:GO:0005737 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0008565 GO:GO:0006606
GeneTree:ENSGT00610000085856 OMA:TQGGTFN EMBL:AAEX03013103
EMBL:AAEX03013102 Ensembl:ENSCAFT00000006946 Uniprot:F1PV58
Length = 497
Score = 95 (38.5 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 27/122 (22%), Positives = 58/122 (47%)
Query: 885 LIDAKAVDRLLACLYHENVEVVEAALSALCTLLDEKVDVDKSVSMLSEVNAIQHVLNVVK 944
+ID+ V L+ L H+ V+V AAL A+ ++ D+ ++ + + H N++
Sbjct: 256 VIDSGVVPFLVPLLSHQEVKVQTAALRAVGNIV---TGTDEQTQVVLNCDVLSHFPNLLS 312
Query: 945 EHRQEVLQQKSFWMIERFLVKGGNKQASDISQDRLLPATLVSAFHHGDVNTRQMAEKILR 1004
H +E + +++ W + + G +Q + L+P ++ GD T++ A +
Sbjct: 313 -HPKEKINKEAVWFLSN-ITAGNQQQVQAVIDAGLIPM-IIHQLAKGDFGTQKEAAWAIS 369
Query: 1005 HL 1006
+L
Sbjct: 370 NL 371
Score = 79 (32.9 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 30/118 (25%), Positives = 56/118 (47%)
Query: 448 IDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLN-EGSEEIQMEMASYLGEIVL 506
+ + A + A ++L + +RNP I + ++G+L L+ L + + +Q E A L I
Sbjct: 63 VQLSAVQAARKLLSS-DRNPP-IDDLIKSGILPILVKCLERDDNPSLQFEAAWALTNIAS 120
Query: 507 GHDSKIN--VPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCK-ILVEAGIVQ 561
G ++ V A +R++HS + A AL I P C+ ++ G+V+
Sbjct: 121 GTSAQTQAVVQSNAVPLFLRLLHSPHQNVCEQAVWALGNIIGDGPQCRDYVISLGVVK 178
>TAIR|locus:2050659 [details] [associations]
symbol:AT2G45920 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0016567 "protein ubiquitination"
evidence=IEA] InterPro:IPR003613 Pfam:PF04564 SMART:SM00504
UniPathway:UPA00143 EMBL:CP002685 GenomeReviews:CT485783_GR
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842
Gene3D:3.40.50.620 InterPro:IPR014729 GO:GO:0000151 EMBL:AC004665
HSSP:Q8VZ40 HOGENOM:HOG000115794 ProtClustDB:CLSN2680474
EMBL:AK175182 EMBL:BT015764 EMBL:BT020181 IPI:IPI00546399
PIR:T02455 RefSeq:NP_182116.2 UniGene:At.22480
ProteinModelPortal:Q683D5 SMR:Q683D5 IntAct:Q683D5
EnsemblPlants:AT2G45920.1 GeneID:819200 KEGG:ath:AT2G45920
TAIR:At2g45920 eggNOG:NOG265582 InParanoid:Q683D5 OMA:ENRITES
PhylomeDB:Q683D5 Genevestigator:Q683D5 Uniprot:Q683D5
Length = 400
Score = 124 (48.7 bits), Expect = 0.00028, P = 0.00028
Identities = 30/73 (41%), Positives = 39/73 (53%)
Query: 229 PLYETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEK-FETSGDIFCPTTGKKLMSRGL 287
P Y F CP++ E+M DP G TYE AI+ W + ETS P T KL L
Sbjct: 326 PQY--FICPISLEVMKDPQLAADGFTYEAEAISTWLQGGHETS-----PMTNTKLHHTKL 378
Query: 288 NTNVALKTTIEEW 300
N+AL++ I+EW
Sbjct: 379 VPNLALRSAIQEW 391
>TAIR|locus:2151641 [details] [associations]
symbol:AT5G61560 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004672
"protein kinase activity" evidence=IEA] [GO:0004674 "protein
serine/threonine kinase activity" evidence=IEA] [GO:0004713
"protein tyrosine kinase activity" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006468 "protein phosphorylation" evidence=IEA] [GO:0016301
"kinase activity" evidence=ISS] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0016772 "transferase activity,
transferring phosphorus-containing groups" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0009507
"chloroplast" evidence=IDA] [GO:0002237 "response to molecule of
bacterial origin" evidence=RCA] [GO:0002238 "response to molecule
of fungal origin" evidence=RCA] [GO:0002679 "respiratory burst
involved in defense response" evidence=RCA] [GO:0006499 "N-terminal
protein myristoylation" evidence=RCA] [GO:0006865 "amino acid
transport" evidence=RCA] [GO:0009581 "detection of external
stimulus" evidence=RCA] [GO:0009595 "detection of biotic stimulus"
evidence=RCA] [GO:0010200 "response to chitin" evidence=RCA]
[GO:0030968 "endoplasmic reticulum unfolded protein response"
evidence=RCA] InterPro:IPR000719 InterPro:IPR001245
InterPro:IPR003613 InterPro:IPR006016 InterPro:IPR008271
InterPro:IPR011009 InterPro:IPR017441 Pfam:PF00582 Pfam:PF04564
Pfam:PF07714 PROSITE:PS00107 PROSITE:PS00108 PROSITE:PS50011
SMART:SM00504 UniPathway:UPA00143 GO:GO:0005886 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009507 GO:GO:0006950
eggNOG:COG0515 SUPFAM:SSF56112 GO:GO:0004674 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004842 Gene3D:3.40.50.620
InterPro:IPR014729 GO:GO:0000151 EMBL:AB012239 HSSP:Q8VZ40
HOGENOM:HOG000237993 EMBL:AK228747 IPI:IPI00543972 IPI:IPI00886514
RefSeq:NP_200964.2 UniGene:At.29098 ProteinModelPortal:Q9FKG5
SMR:Q9FKG5 STRING:Q9FKG5 PaxDb:Q9FKG5 PRIDE:Q9FKG5
EnsemblPlants:AT5G61560.1 GeneID:836277 KEGG:ath:AT5G61560
GeneFarm:2020 TAIR:At5g61560 InParanoid:Q9FKG5 OMA:CIERETE
PhylomeDB:Q9FKG5 ProtClustDB:CLSN2918426 Genevestigator:Q9FKG5
Uniprot:Q9FKG5
Length = 796
Score = 128 (50.1 bits), Expect = 0.00028, P = 0.00028
Identities = 26/70 (37%), Positives = 38/70 (54%)
Query: 234 FYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVAL 293
FYCP+TK++M++P G TYE+ AI W +K S P T S L N +L
Sbjct: 729 FYCPITKDVMENPCVASDGYTYEKRAIKEWLQKNHKS-----PMTDLPFPSDSLLPNHSL 783
Query: 294 KTTIEEWKDR 303
+ I+EW+ +
Sbjct: 784 LSAIKEWRSQ 793
>MGI|MGI:1100863 [details] [associations]
symbol:Kpna3 "karyopherin (importin) alpha 3" species:10090
"Mus musculus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006606 "protein import into nucleus"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IPI] [GO:0008565 "protein
transporter activity" evidence=IEA] [GO:0015031 "protein transport"
evidence=IEA] InterPro:IPR000225 InterPro:IPR002652
InterPro:IPR016024 InterPro:IPR024931 Pfam:PF00514 Pfam:PF01749
PIRSF:PIRSF005673 PROSITE:PS50176 PROSITE:PS51214 SMART:SM00185
MGI:MGI:1100863 GO:GO:0005634 GO:GO:0005737 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0008565 eggNOG:COG5064
GO:GO:0006606 HOGENOM:HOG000167616 HOVERGEN:HBG001846 CTD:3839
OMA:TQGGTFN OrthoDB:EOG48GW2Z EMBL:AF020772 EMBL:BC026885
IPI:IPI00230429 RefSeq:NP_032492.1 UniGene:Mm.25548
ProteinModelPortal:O35344 SMR:O35344 IntAct:O35344 STRING:O35344
PhosphoSite:O35344 PaxDb:O35344 PRIDE:O35344
Ensembl:ENSMUST00000022496 GeneID:16648 KEGG:mmu:16648
InParanoid:O35344 NextBio:290329 Bgee:O35344 CleanEx:MM_KPNA3
Genevestigator:O35344 GermOnline:ENSMUSG00000021929 Uniprot:O35344
Length = 521
Score = 95 (38.5 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 27/122 (22%), Positives = 58/122 (47%)
Query: 885 LIDAKAVDRLLACLYHENVEVVEAALSALCTLLDEKVDVDKSVSMLSEVNAIQHVLNVVK 944
+ID+ V L+ L H+ V+V AAL A+ ++ D+ ++ + + H N++
Sbjct: 280 VIDSGVVPFLVPLLSHQEVKVQTAALRAVGNIV---TGTDEQTQVVLNCDVLSHFPNLLS 336
Query: 945 EHRQEVLQQKSFWMIERFLVKGGNKQASDISQDRLLPATLVSAFHHGDVNTRQMAEKILR 1004
H +E + +++ W + + G +Q + L+P ++ GD T++ A +
Sbjct: 337 -HPKEKINKEAVWFLSN-ITAGNQQQVQAVIDAGLIPM-IIHQLAKGDFGTQKEAAWAIS 393
Query: 1005 HL 1006
+L
Sbjct: 394 NL 395
Score = 79 (32.9 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 30/118 (25%), Positives = 56/118 (47%)
Query: 448 IDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLN-EGSEEIQMEMASYLGEIVL 506
+ + A + A ++L + +RNP I + ++G+L L+ L + + +Q E A L I
Sbjct: 87 VQLSAVQAARKLLSS-DRNPP-IDDLIKSGILPILVKCLERDDNPSLQFEAAWALTNIAS 144
Query: 507 GHDSKIN--VPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCK-ILVEAGIVQ 561
G ++ V A +R++HS + A AL I P C+ ++ G+V+
Sbjct: 145 GTSAQTQAVVQSNAVPLFLRLLHSPHQNVCEQAVWALGNIIGDGPQCRDYVISLGVVK 202
>RGD|1311339 [details] [associations]
symbol:Kpna3 "karyopherin alpha 3" species:10116 "Rattus
norvegicus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006606 "protein import into nucleus"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA;ISO] [GO:0008565 "protein transporter activity"
evidence=IEA] InterPro:IPR000225 InterPro:IPR002652
InterPro:IPR016024 InterPro:IPR024931 Pfam:PF00514 Pfam:PF01749
PIRSF:PIRSF005673 PROSITE:PS50176 PROSITE:PS51214 SMART:SM00185
RGD:1311339 GO:GO:0005634 GO:GO:0005737 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0008565 eggNOG:COG5064
GO:GO:0006606 HOGENOM:HOG000167616 HOVERGEN:HBG001846 CTD:3839
OrthoDB:EOG48GW2Z EMBL:AY779027 IPI:IPI00364414
RefSeq:NP_001014792.1 UniGene:Rn.18504 SMR:Q56R18 STRING:Q56R18
Ensembl:ENSRNOT00000020238 GeneID:361055 KEGG:rno:361055
UCSC:RGD:1311339 InParanoid:Q56R18 NextBio:675048
Genevestigator:Q56R18 Uniprot:Q56R18
Length = 521
Score = 95 (38.5 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 27/122 (22%), Positives = 58/122 (47%)
Query: 885 LIDAKAVDRLLACLYHENVEVVEAALSALCTLLDEKVDVDKSVSMLSEVNAIQHVLNVVK 944
+ID+ V L+ L H+ V+V AAL A+ ++ D+ ++ + + H N++
Sbjct: 280 VIDSGVVPFLVPLLSHQEVKVQTAALRAVGNIV---TGTDEQTQVVLNCDVLSHFPNLLS 336
Query: 945 EHRQEVLQQKSFWMIERFLVKGGNKQASDISQDRLLPATLVSAFHHGDVNTRQMAEKILR 1004
H +E + +++ W + + G +Q + L+P ++ GD T++ A +
Sbjct: 337 -HPKEKINKEAVWFLSN-ITAGNQQQVQAVIDAGLIPM-IIHQLAKGDFGTQKEAAWAIS 393
Query: 1005 HL 1006
+L
Sbjct: 394 NL 395
Score = 79 (32.9 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 30/118 (25%), Positives = 56/118 (47%)
Query: 448 IDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLN-EGSEEIQMEMASYLGEIVL 506
+ + A + A ++L + +RNP I + ++G+L L+ L + + +Q E A L I
Sbjct: 87 VQLSAVQAARKLLSS-DRNPP-IDDLIKSGILPILVKCLERDDNPSLQFEAAWALTNIAS 144
Query: 507 GHDSKIN--VPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCK-ILVEAGIVQ 561
G ++ V A +R++HS + A AL I P C+ ++ G+V+
Sbjct: 145 GTSAQTQAVVQSNAVPLFLRLLHSPHQNVCEQAVWALGNIIGDGPQCRDYVISLGVVK 202
>TAIR|locus:2050669 [details] [associations]
symbol:AT2G45910 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004672
"protein kinase activity" evidence=IEA] [GO:0004674 "protein
serine/threonine kinase activity" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005886 "plasma membrane" evidence=ISM]
[GO:0006468 "protein phosphorylation" evidence=IEA] [GO:0016301
"kinase activity" evidence=ISS] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0016772 "transferase activity,
transferring phosphorus-containing groups" evidence=IEA]
InterPro:IPR000719 InterPro:IPR003613 InterPro:IPR006016
InterPro:IPR008271 InterPro:IPR011009 InterPro:IPR017441
Pfam:PF00069 Pfam:PF00582 Pfam:PF04564 PROSITE:PS00107
PROSITE:PS00108 PROSITE:PS50011 SMART:SM00504 UniPathway:UPA00143
GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006950
eggNOG:COG0515 SUPFAM:SSF56112 GO:GO:0004674 Gene3D:2.60.120.200
InterPro:IPR013320 Gene3D:3.30.40.10 InterPro:IPR013083
GO:GO:0004842 Gene3D:3.40.50.620 InterPro:IPR014729 GO:GO:0000151
EMBL:AC004665 HSSP:Q8VZ40 HOGENOM:HOG000237993 EMBL:BT002512
EMBL:AK227123 IPI:IPI00542046 PIR:T02456 RefSeq:NP_182115.2
UniGene:At.36571 ProteinModelPortal:Q8GUH1 SMR:Q8GUH1 PRIDE:Q8GUH1
EnsemblPlants:AT2G45910.1 GeneID:819199 KEGG:ath:AT2G45910
GeneFarm:1984 TAIR:At2g45910 InParanoid:Q8GUH1 OMA:KGTFAYM
PhylomeDB:Q8GUH1 ProtClustDB:CLSN2680270 Genevestigator:Q8GUH1
Uniprot:Q8GUH1
Length = 834
Score = 128 (50.1 bits), Expect = 0.00030, P = 0.00030
Identities = 31/75 (41%), Positives = 40/75 (53%)
Query: 227 IEPLYETFYCPLTKEIMDDPVTIESGVTYERNAITAWFE-KFETSGDIFCPTTGKKLMSR 285
I P Y F CP+ +E+M DP G TYE AI AW + + +TS P T KL
Sbjct: 762 IAPPY--FICPIFQEVMQDPHVAADGFTYEAEAIRAWLDSEHDTS-----PMTNVKLSHT 814
Query: 286 GLNTNVALKTTIEEW 300
L N AL++ I+EW
Sbjct: 815 SLIANHALRSAIQEW 829
>TAIR|locus:2144846 [details] [associations]
symbol:AT5G09800 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0016567 "protein ubiquitination"
evidence=IEA] [GO:0010200 "response to chitin" evidence=IEP;RCA]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR003613
InterPro:IPR016024 Pfam:PF04564 PROSITE:PS50176 SMART:SM00504
UniPathway:UPA00143 EMBL:CP002688 GenomeReviews:BA000015_GR
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0010200
Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151
EMBL:AB020752 EMBL:AL353994 HSSP:Q8VZ40 HOGENOM:HOG000238505
eggNOG:NOG315056 ProtClustDB:CLSN2684525 EMBL:BT010883
EMBL:AK175195 EMBL:AK176549 IPI:IPI00520675 PIR:T49918
RefSeq:NP_196542.1 UniGene:At.32456 ProteinModelPortal:Q9LXE3
SMR:Q9LXE3 IntAct:Q9LXE3 EnsemblPlants:AT5G09800.1 GeneID:830840
KEGG:ath:AT5G09800 TAIR:At5g09800 InParanoid:Q9LXE3 OMA:RSEICDG
PhylomeDB:Q9LXE3 Genevestigator:Q9LXE3 Uniprot:Q9LXE3
Length = 409
Score = 123 (48.4 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 25/77 (32%), Positives = 42/77 (54%)
Query: 226 YIEPLYETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSR 285
YI + F CP++ ++M PV++ +GVTY+R +I W + G+ CP T + L ++
Sbjct: 7 YITTVPCFFKCPISLDVMKSPVSLSTGVTYDRVSIQRWLD----DGNNTCPATMQILQNK 62
Query: 286 GLNTNVALKTTIEEWKD 302
N+ L I+ W D
Sbjct: 63 EFVPNLTLHRLIDHWSD 79
Score = 46 (21.3 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 21/81 (25%), Positives = 34/81 (41%)
Query: 876 ACSSQNTFCLIDAKAVDRLLACLYHE--NVEVVEAALS---ALCTLLDEKVDVDKSVSML 930
A S + LI K V +L + L +V V E L A+ + + + ++ V +
Sbjct: 260 ASSKRVKLALIREKLVTKLTSLLTDPTTSVSVTEKCLKLLEAISSCKEGRSEICDGVCVE 319
Query: 931 SEVNAIQHVLNVVKEHRQEVL 951
+ VN + V EH VL
Sbjct: 320 TVVNKLMKVSTAATEHAVTVL 340
>MGI|MGI:1919387 [details] [associations]
symbol:Wdsub1 "WD repeat, SAM and U-box domain containing 1"
species:10090 "Mus musculus" [GO:0000151 "ubiquitin ligase complex"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0016567 "protein
ubiquitination" evidence=IEA] InterPro:IPR017986 InterPro:IPR001660
InterPro:IPR001680 InterPro:IPR003613 InterPro:IPR011510
InterPro:IPR015943 Pfam:PF00400 Pfam:PF04564 Pfam:PF07647
PROSITE:PS50082 PROSITE:PS50105 PROSITE:PS50294 SMART:SM00320
SMART:SM00454 SMART:SM00504 MGI:MGI:1919387 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775 eggNOG:COG2319
InterPro:IPR020472 PRINTS:PR00320 Gene3D:3.30.40.10
InterPro:IPR013083 Gene3D:1.10.150.50 InterPro:IPR013761
SUPFAM:SSF47769 GO:GO:0004842 GeneTree:ENSGT00700000104017
GO:GO:0000151 HSSP:Q8VZ40 HOGENOM:HOG000231980 HOVERGEN:HBG080511
OrthoDB:EOG4NCMCJ CTD:151525 OMA:HCCCFSP EMBL:AK011391
EMBL:AL929242 EMBL:BC050792 EMBL:BC061948 IPI:IPI00132574
RefSeq:NP_001153108.1 RefSeq:NP_082394.1 UniGene:Mm.288734
UniGene:Mm.488684 ProteinModelPortal:Q9D0I6 SMR:Q9D0I6
PhosphoSite:Q9D0I6 PRIDE:Q9D0I6 Ensembl:ENSMUST00000028368
GeneID:72137 KEGG:mmu:72137 UCSC:uc008jto.2 InParanoid:Q9D0I6
NextBio:335536 Bgee:Q9D0I6 CleanEx:MM_WDSUB1 Genevestigator:Q9D0I6
Uniprot:Q9D0I6
Length = 474
Score = 124 (48.7 bits), Expect = 0.00037, P = 0.00037
Identities = 26/74 (35%), Positives = 38/74 (51%)
Query: 232 ETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNV 291
+ F CP+T+E+M DPV G +YER A+ +W K + + P T L S L N
Sbjct: 404 DEFICPITRELMKDPVIASDGYSYEREAMESWIHKKKRTS----PMTNLALPSLVLTPNR 459
Query: 292 ALKTTIEEWKDRND 305
LK I W + ++
Sbjct: 460 TLKMAINRWLETHE 473
>TAIR|locus:2032472 [details] [associations]
symbol:AT1G24330 species:3702 "Arabidopsis thaliana"
[GO:0000151 "ubiquitin ligase complex" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0005871 "kinesin complex" evidence=IEA]
[GO:0016567 "protein ubiquitination" evidence=IEA] [GO:0019894
"kinesin binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=IDA] InterPro:IPR000225 InterPro:IPR003613
InterPro:IPR016024 Pfam:PF04564 PROSITE:PS50176 SMART:SM00185
SMART:SM00504 UniPathway:UPA00143 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009507 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004842 GO:GO:0000151 EMBL:AC002396
HSSP:Q8VZ40 eggNOG:NOG251146 HOGENOM:HOG000082565
ProtClustDB:CLSN2679347 IPI:IPI00520534 PIR:T00664
RefSeq:NP_173843.2 UniGene:At.41444 ProteinModelPortal:O48700
SMR:O48700 PaxDb:O48700 PRIDE:O48700 EnsemblPlants:AT1G24330.1
GeneID:839049 KEGG:ath:AT1G24330 TAIR:At1g24330 InParanoid:O48700
OMA:RILMGAN PhylomeDB:O48700 Genevestigator:O48700 Uniprot:O48700
Length = 771
Score = 126 (49.4 bits), Expect = 0.00044, Sum P(3) = 0.00044
Identities = 28/73 (38%), Positives = 38/73 (52%)
Query: 232 ETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNV 291
E CP++ ++M DPV I SG TYER I WF + G CP T ++L L N
Sbjct: 277 EELRCPISLQLMYDPVIIASGQTYERVCIEKWF----SDGHNSCPKTQQQLPHLSLTPNY 332
Query: 292 ALKTTIEEWKDRN 304
+K I W ++N
Sbjct: 333 CVKGLIASWCEQN 345
Score = 54 (24.1 bits), Expect = 0.00044, Sum P(3) = 0.00044
Identities = 21/105 (20%), Positives = 48/105 (45%)
Query: 460 LRNLERNPDNIKCMAENGLLEPLMHHLNEGSE---EIQMEMASYLGEIVLGHDSKINVPG 516
L NL NI + + +++ L + G+ E + + L G + I G
Sbjct: 576 LYNLSTYSPNIPTLLSSNIIKSLQVLASTGNHLWIEKSLAVLLNLASSREGKEEMITTQG 635
Query: 517 RAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSC-KILVEAGIV 560
STL ++ +G+++ + A L+ + + SC +++++ G++
Sbjct: 636 MI-STLATVLDTGDTVEQEQAVSCLVILCTGSESCIQMVLQEGVI 679
Score = 39 (18.8 bits), Expect = 0.00044, Sum P(3) = 0.00044
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 342 NKVQVRNVGVLPLLTKLL 359
NK + GV+PLL K++
Sbjct: 504 NKELMLTSGVIPLLEKMI 521
>TAIR|locus:2198190 [details] [associations]
symbol:PUB54 "plant U-box 54" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0016567 "protein
ubiquitination" evidence=IEA] InterPro:IPR003613 InterPro:IPR006016
Pfam:PF00582 Pfam:PF04564 SMART:SM00504 UniPathway:UPA00143
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0006950
Gene3D:3.30.40.10 InterPro:IPR013083 EMBL:AC009273 GO:GO:0004842
Gene3D:3.40.50.620 InterPro:IPR014729 GO:GO:0000151 HSSP:Q8VZ40
IPI:IPI00532514 PIR:F86147 RefSeq:NP_171674.2 UniGene:At.42636
ProteinModelPortal:Q9LQ92 SMR:Q9LQ92 EnsemblPlants:AT1G01680.1
GeneID:839251 KEGG:ath:AT1G01680 TAIR:At1g01680 eggNOG:NOG331289
HOGENOM:HOG000115795 InParanoid:Q9LQ92 OMA:RDICINK PhylomeDB:Q9LQ92
ProtClustDB:CLSN2917980 Genevestigator:Q9LQ92 Uniprot:Q9LQ92
Length = 308
Score = 120 (47.3 bits), Expect = 0.00047, P = 0.00047
Identities = 27/77 (35%), Positives = 36/77 (46%)
Query: 228 EPLYETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGL 287
+P E F CP++ EIM DP G TYE W SG P T K L + L
Sbjct: 231 DPRLEDFKCPISMEIMRDPHVAADGFTYEAEEFRKWLR----SGGRTSPKTNKPLENHNL 286
Query: 288 NTNVALKTTIEEWKDRN 304
N L+ I++W ++N
Sbjct: 287 VPNHTLRIIIKDWLEKN 303
>TAIR|locus:2093974 [details] [associations]
symbol:PUB29 "plant U-box 29" species:3702 "Arabidopsis
thaliana" [GO:0000151 "ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0016567 "protein
ubiquitination" evidence=IEA;IDA] [GO:0010200 "response to chitin"
evidence=IEP] [GO:0070696 "transmembrane receptor protein
serine/threonine kinase binding" evidence=IPI] [GO:0009506
"plasmodesma" evidence=IDA] InterPro:IPR003613 InterPro:IPR016024
Pfam:PF04564 PROSITE:PS50176 SMART:SM00504 UniPathway:UPA00143
GO:GO:0009506 EMBL:CP002686 GenomeReviews:BA000014_GR
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0010200
EMBL:AB026654 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004842
GO:GO:0000151 HSSP:Q8VZ40 HOGENOM:HOG000238505
ProtClustDB:CLSN2684525 EMBL:AK117976 EMBL:BT005359 IPI:IPI00545400
RefSeq:NP_188501.1 UniGene:At.38506 ProteinModelPortal:Q9LSA6
SMR:Q9LSA6 IntAct:Q9LSA6 ProMEX:Q9LSA6 EnsemblPlants:AT3G18710.1
GeneID:821402 KEGG:ath:AT3G18710 TAIR:At3g18710 eggNOG:NOG292721
InParanoid:Q9LSA6 OMA:YITVPSF PhylomeDB:Q9LSA6
Genevestigator:Q9LSA6 Uniprot:Q9LSA6
Length = 415
Score = 116 (45.9 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 23/69 (33%), Positives = 39/69 (56%)
Query: 234 FYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVAL 293
F CP++ ++M PV++ +GVTY+R +I W + G+ CP T + L ++ N+ L
Sbjct: 16 FKCPISLDVMRSPVSLCTGVTYDRASIQRWLD----GGNNTCPATMQLLKTKDFVPNLTL 71
Query: 294 KTTIEEWKD 302
+ I W D
Sbjct: 72 QRLINIWSD 80
Score = 52 (23.4 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 45/250 (18%), Positives = 95/250 (38%)
Query: 427 EKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENG-LLEPLMHH 485
+K+ +P + ++ T K + + A I D I + ER N+ + G L ++
Sbjct: 139 KKMEFVPMLVDIIRTKKTKIELVIMAIRILDSIKVDRERL-SNLMLANDGGDCLTAILLA 197
Query: 486 LNEGSEEIQMEMASYLGEIVLGHDSKINVPGR--AASTLIRMV---HSGNSLTRRIAFKA 540
+ G+ E ++E L I SK+ + R + +++ + S + +
Sbjct: 198 IQRGNLESKIESVRVLDWISFDAKSKLMIAERDGVLTEMMKSISITESSDPSLIEASLSF 257
Query: 541 LMQISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKXXXXXXXXXXXXSGLEHHSL 600
L+ IS L+ A + + + + + N + K G L
Sbjct: 258 LITISKSKRVRSKLIAAKAITKIKDILLTETLTNVAVTEKSLKLLETLSSKREG----RL 313
Query: 601 QVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETEA 660
++ + + VV ++ + ++T E H + IL CL + T+ ++ +
Sbjct: 314 EICGDDNGRCVEGVVKKLLKV--STTATE---HAVTILWCLCYVFREDKTVEETVERSNG 368
Query: 661 SYSLLEVINN 670
LL VI +
Sbjct: 369 VTKLLVVIQS 378
>UNIPROTKB|A2AAZ6 [details] [associations]
symbol:TRIM39 "E3 ubiquitin-protein ligase TRIM39"
species:9606 "Homo sapiens" [GO:0005622 "intracellular"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR018957 InterPro:IPR000315
Pfam:PF00643 PROSITE:PS50089 PROSITE:PS50119 SMART:SM00184
SMART:SM00336 Pfam:PF00097 Prosite:PS00518 GO:GO:0046872
GO:GO:0008270 GO:GO:0005622 Gene3D:3.30.40.10 InterPro:IPR013083
InterPro:IPR017907 HOGENOM:HOG000234133 HOVERGEN:HBG001357
EMBL:AL662832 EMBL:AL662795 EMBL:AL773535 EMBL:BX294158
EMBL:CR759928 EMBL:BX927214 EMBL:CR759281 EMBL:BX248580
HGNC:HGNC:10065 IPI:IPI00643713 SMR:A2AAZ6 Ensembl:ENST00000428728
Ensembl:ENST00000431871 Ensembl:ENST00000440130
Ensembl:ENST00000442914 Ensembl:ENST00000447077
Ensembl:ENST00000449396 Ensembl:ENST00000450421 Uniprot:A2AAZ6
Length = 261
Score = 117 (46.2 bits), Expect = 0.00068, P = 0.00068
Identities = 44/157 (28%), Positives = 67/157 (42%)
Query: 224 AQYIEPLYETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLM 283
A +E L C + E + +PV IE G + + IT W+E E D CP K
Sbjct: 17 AAALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLER--DFPCPVCRKTSR 74
Query: 284 SRGLNTNVALKTTIEEWKDRNDAERIKVSRAALSLAGSDRMVLEAIKDLQTVCQRKQYNK 343
R L N L + +E K +R K+ +L + + L +D + VC +
Sbjct: 75 YRSLRPNRQLGSMVEIAKQLQAVKR-KIRDESLCPQHHEALSLFCYEDQEAVCLICAISH 133
Query: 344 VQVRNVGVLPLLTKLLEYKDRNVRCAAMELLRQLVVE 380
R V+PL EYK++ +C +E L Q + E
Sbjct: 134 TH-RAHTVVPLDDATQEYKEKLQKC--LEPLEQKLQE 167
>ZFIN|ZDB-GENE-030616-541 [details] [associations]
symbol:kpna3 "karyopherin (importin) alpha 3"
species:7955 "Danio rerio" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006606 "protein import into nucleus" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008565 "protein transporter activity"
evidence=IEA] [GO:0015031 "protein transport" evidence=IEA]
[GO:0006810 "transport" evidence=IEA] InterPro:IPR000225
InterPro:IPR002652 InterPro:IPR016024 InterPro:IPR024931
Pfam:PF00514 Pfam:PF01749 PIRSF:PIRSF005673 PROSITE:PS50176
PROSITE:PS51214 SMART:SM00185 ZFIN:ZDB-GENE-030616-541
GO:GO:0005634 GO:GO:0005737 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0008565 GO:GO:0006606 HOGENOM:HOG000167616
GeneTree:ENSGT00610000085856 HOVERGEN:HBG001846 CTD:3839
OMA:TQGGTFN HSSP:P52292 EMBL:BX294379 EMBL:AL606727 IPI:IPI00503523
RefSeq:NP_958477.2 UniGene:Dr.78859 SMR:Q8JFT7
Ensembl:ENSDART00000074519 GeneID:368640 KEGG:dre:368640
InParanoid:Q8JFT7 NextBio:20813085 Uniprot:Q8JFT7
Length = 520
Score = 90 (36.7 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 26/122 (21%), Positives = 57/122 (46%)
Query: 885 LIDAKAVDRLLACLYHENVEVVEAALSALCTLLDEKVDVDKSVSMLSEVNAIQHVLNVVK 944
+ID+ V L+ L H+ V+V AAL A+ ++ D+ ++ + + H + +
Sbjct: 280 VIDSGVVPYLVPLLSHQEVKVQTAALRAVGNIV---TGTDEQTQVVLNCDVLTH-FSTLL 335
Query: 945 EHRQEVLQQKSFWMIERFLVKGGNKQASDISQDRLLPATLVSAFHHGDVNTRQMAEKILR 1004
H +E + +++ W + + G +Q + L+P ++ GD T++ A +
Sbjct: 336 THPKEKINKEAVWFLSN-ITAGNQQQVQAVIDAGLIPM-IIHQLAKGDFGTQKEAAWAIS 393
Query: 1005 HL 1006
+L
Sbjct: 394 NL 395
Score = 80 (33.2 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 34/124 (27%), Positives = 57/124 (45%)
Query: 445 NWSIDVFAAEIADQILRNLERNP---DNIKCMAENGLLEPLMHHLN-EGSEEIQMEMASY 500
N + + A + A ++L + +RNP D IKC G+L L+ L + + +Q E A
Sbjct: 84 NAVVQLSAVQAARKLLSS-DRNPPIDDLIKC----GILPILVKCLERDDNPSLQFEAAWA 138
Query: 501 LGEIVLGHDSKIN--VPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCK-ILVEA 557
L I G ++ V A +R++HS + A AL I P C+ ++
Sbjct: 139 LTNIASGTSAQTQAVVKSNAVPLFLRLLHSPHQNVCEQAVWALGNIIGDGPQCRDYVISL 198
Query: 558 GIVQ 561
G+V+
Sbjct: 199 GVVK 202
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.133 0.378 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1019 918 0.00090 122 3 11 22 0.38 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 51
No. of states in DFA: 623 (66 KB)
Total size of DFA: 407 KB (2199 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 71.55u 0.10s 71.65t Elapsed: 00:00:04
Total cpu time: 71.56u 0.10s 71.66t Elapsed: 00:00:04
Start: Mon May 20 15:20:39 2013 End: Mon May 20 15:20:43 2013