BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001733
(1019 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14,
An Armadillo Repeat Containing Protein From Arabidopsis
Thaliana
Length = 78
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Query: 232 ETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNV 291
E F CP++ E+M DPV + +G TYER++I W + +G CP + + L+ GL N
Sbjct: 7 EYFRCPISLELMKDPVIVSTGQTYERSSIQKWLD----AGHKTCPKSQETLLHAGLTPNY 62
Query: 292 ALKTTIEEWKDRNDAE 307
LK+ I W + N E
Sbjct: 63 VLKSLIALWCESNGIE 78
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 43.1 bits (100), Expect = 8e-04, Method: Composition-based stats.
Identities = 59/241 (24%), Positives = 92/241 (38%), Gaps = 48/241 (19%)
Query: 327 EAIKDLQTVCQRKQYNKVQVRNVGVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKE 386
EA +DL + + + G + +L KLL D V+ A L + DE +
Sbjct: 21 EAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 80
Query: 387 MIAETMDXXXXXXXXXXXHRPVRHEXXXXXXXXXXXXXXCEKIGSIPGGILVLITFKFNW 446
I + GG+ VL+ K
Sbjct: 81 AIVDA------------------------------------------GGVEVLV--KLLT 96
Query: 447 SIDVFAAEIADQILRNLERNPDN-IKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIV 505
S D + A + L N+ PD IK + + G +E L+ L E+Q E A L I
Sbjct: 97 STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIA 156
Query: 506 LGHDSKIN--VPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSC-KILVEAGIVQV 562
G D I V L++++ S +S ++ A +AL I+S S K +V+AG V+V
Sbjct: 157 SGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEV 216
Query: 563 M 563
+
Sbjct: 217 L 217
>pdb|2L7N|A Chain A, Nmr Structure Of The B Domain Of Talin
Length = 168
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 456 ADQILRNLERNPDNIKCMAENGLLEPL--------MHHLNEGSEEIQMEMASYLGEIVLG 507
A +++NLE++ IK A +G L+PL L ++ + +A LGEI G
Sbjct: 14 ALSVVQNLEKDLQEIKAAARDGKLKPLPGETMEKCTQDLGNSTKAVSSAIAKLLGEIAQG 73
Query: 508 HDSKINVPGRAASTLIR 524
+++ + R + +R
Sbjct: 74 NENYAGIAARDVAGGLR 90
>pdb|2YU4|A Chain A, Solution Structure Of The Sp-Ring Domain In Non-Smc
Element 2 Homolog (Mms21, S. Cerevisiae)
Length = 94
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 234 FYCPLTKEIMDDPVTIE-SGVTYERNAITAWFE-KFETSGDIFCPTTG 279
F CP+TKE M PV + G TYE +AI E + + +CP G
Sbjct: 8 FTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIG 55
>pdb|2YSJ|A Chain A, Solution Structure Of The Ring Domain (1-56) From
Tripartite Motif-containing Protein 31
Length = 63
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 225 QYIEPLYETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIF-CP 276
Q++ L E CP+ +I+ PVTI+ G + IT + ETS F CP
Sbjct: 12 QFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCIT---QIGETSCGFFKCP 61
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 6/133 (4%)
Query: 878 SSQNTFCLIDAKAVDRLLACLYHENVEVVEAALSALCTLLDEKVDVDKSVSMLSEVNAIQ 937
+S T ++DA AV + LY +VEV E A+ AL + + D V + NA++
Sbjct: 74 TSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYV---LQCNAME 130
Query: 938 HVLNVVKEHRQEVLQQKSFWMIERFLVKGGNKQASDISQDRLLPATLVSAFHHGDVNTRQ 997
+L + ++ +++ + W + L +G Q + LP TL + D T
Sbjct: 131 PILGLFNSNKPSLIRTAT-WTLSN-LCRGKKPQPDWSVVSQALP-TLAKLIYSMDTETLV 187
Query: 998 MAEKILRHLNKMP 1010
A + +L+ P
Sbjct: 188 DACWAISYLSDGP 200
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 6/133 (4%)
Query: 878 SSQNTFCLIDAKAVDRLLACLYHENVEVVEAALSALCTLLDEKVDVDKSVSMLSEVNAIQ 937
+S T ++DA AV + LY +VEV E A+ AL + + D V + NA++
Sbjct: 74 TSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYV---LQCNAME 130
Query: 938 HVLNVVKEHRQEVLQQKSFWMIERFLVKGGNKQASDISQDRLLPATLVSAFHHGDVNTRQ 997
+L + ++ +++ + W + L +G Q + LP TL + D T
Sbjct: 131 PILGLFNSNKPSLIRTAT-WTLSN-LCRGKKPQPDWSVVSQALP-TLAKLIYSMDTETLV 187
Query: 998 MAEKILRHLNKMP 1010
A + +L+ P
Sbjct: 188 DACWAISYLSDGP 200
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 32.0 bits (71), Expect = 1.8, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 236 CPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCP 276
C + E + +PV IE G + + IT W+E E D CP
Sbjct: 18 CSVCLEYLKEPVIIECGHNFCKACITRWWEDLER--DFPCP 56
>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
Tripartite Motif-containing Protein 31
Length = 73
Score = 32.0 bits (71), Expect = 2.0, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 225 QYIEPLYETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIF-CP 276
Q++ L E CP+ +I+ PVTI+ G + IT + ETS F CP
Sbjct: 12 QFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCIT---QIGETSCGFFKCP 61
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 6/133 (4%)
Query: 878 SSQNTFCLIDAKAVDRLLACLYHENVEVVEAALSALCTLLDEKVDVDKSVSMLSEVNAIQ 937
+S T ++DA AV + LY +VEV E A+ AL + + D V + NA++
Sbjct: 76 TSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYV---LQCNAME 132
Query: 938 HVLNVVKEHRQEVLQQKSFWMIERFLVKGGNKQASDISQDRLLPATLVSAFHHGDVNTRQ 997
+L + ++ +++ + W + L +G Q + LP TL + D T
Sbjct: 133 PILGLFNSNKPSLIRTAT-WTLSN-LCRGKKPQPDWSVVSQALP-TLAKLIYSMDTETLV 189
Query: 998 MAEKILRHLNKMP 1010
A + +L+ P
Sbjct: 190 DACWAISYLSDGP 202
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 6/133 (4%)
Query: 878 SSQNTFCLIDAKAVDRLLACLYHENVEVVEAALSALCTLLDEKVDVDKSVSMLSEVNAIQ 937
+S T ++DA AV + LY +VEV E A+ AL + + D V + NA++
Sbjct: 75 TSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYV---LQCNAME 131
Query: 938 HVLNVVKEHRQEVLQQKSFWMIERFLVKGGNKQASDISQDRLLPATLVSAFHHGDVNTRQ 997
+L + ++ +++ + W + L +G Q + LP TL + D T
Sbjct: 132 PILGLFNSNKPSLIRTAT-WTLSN-LCRGKKPQPDWSVVSQALP-TLAKLIYSMDTETLV 188
Query: 998 MAEKILRHLNKMP 1010
A + +L+ P
Sbjct: 189 DACWAISYLSDGP 201
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In A
Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In A
Complex With A C-Myc Nls Peptide
Length = 423
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 6/133 (4%)
Query: 878 SSQNTFCLIDAKAVDRLLACLYHENVEVVEAALSALCTLLDEKVDVDKSVSMLSEVNAIQ 937
+S T ++DA AV + LY +VEV E A+ AL + + D V + NA++
Sbjct: 76 TSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYV---LQCNAME 132
Query: 938 HVLNVVKEHRQEVLQQKSFWMIERFLVKGGNKQASDISQDRLLPATLVSAFHHGDVNTRQ 997
+L + ++ +++ + W + L +G Q + LP TL + D T
Sbjct: 133 PILGLFNSNKPSLIRTAT-WTLSN-LCRGKKPQPDWSVVSQALP-TLAKLIYSMDTETLV 189
Query: 998 MAEKILRHLNKMP 1010
A + +L+ P
Sbjct: 190 DACWAISYLSDGP 202
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 6/133 (4%)
Query: 878 SSQNTFCLIDAKAVDRLLACLYHENVEVVEAALSALCTLLDEKVDVDKSVSMLSEVNAIQ 937
+S T ++DA AV + LY +VEV E A+ AL + + D V + NA++
Sbjct: 75 TSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYV---LQCNAME 131
Query: 938 HVLNVVKEHRQEVLQQKSFWMIERFLVKGGNKQASDISQDRLLPATLVSAFHHGDVNTRQ 997
+L + ++ +++ + W + L +G Q + LP TL + D T
Sbjct: 132 PILGLFNSNKPSLIRTAT-WTLSN-LCRGKKPQPDWSVVSQALP-TLAKLIYSMDTETLV 188
Query: 998 MAEKILRHLNKMP 1010
A + +L+ P
Sbjct: 189 DACWAISYLSDGP 201
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 241 EIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVALKTTIEEW 300
E+M +P SG+TY+R I E + G F P T L L N+A+K I+ +
Sbjct: 216 ELMREPCITPSGITYDRKDIE---EHLQRVGH-FNPVTRSPLTQEQLIPNLAMKEVIDAF 271
Query: 301 KDRN 304
N
Sbjct: 272 ISEN 275
>pdb|2F42|A Chain A, Dimerization And U-Box Domains Of Zebrafish C-Terminal Of
Hsp70 Interacting Protein
Length = 179
Score = 31.2 bits (69), Expect = 3.1, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 241 EIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVALKTTIEEW 300
E+M +P SG+TY+R I E + G F P T L L N+A+K I+ +
Sbjct: 114 ELMREPCITPSGITYDRKDIE---EHLQRVGH-FDPVTRSPLTQDQLIPNLAMKEVIDAF 169
Query: 301 KDRN 304
N
Sbjct: 170 IQEN 173
>pdb|2OXQ|C Chain C, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|D Chain D, Structure Of The Ubch5 :chip U-Box Complex
Length = 80
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 241 EIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVALKTTIEEW 300
E+M +P SG+TY+R I ++ F P T L L N+A+K I+ +
Sbjct: 21 ELMAEPCITPSGITYDRKDIEEHLQRVGH----FDPVTRSPLTQDQLIPNLAMKEVIDAF 76
Query: 301 KDRN 304
N
Sbjct: 77 IQEN 80
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 6/133 (4%)
Query: 878 SSQNTFCLIDAKAVDRLLACLYHENVEVVEAALSALCTLLDEKVDVDKSVSMLSEVNAIQ 937
+S T ++DA AV + LY +VEV E A+ AL + + D V + NA++
Sbjct: 162 TSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYV---LQCNAME 218
Query: 938 HVLNVVKEHRQEVLQQKSFWMIERFLVKGGNKQASDISQDRLLPATLVSAFHHGDVNTRQ 997
+L + ++ +++ + W + L +G Q + LP TL + D T
Sbjct: 219 PILGLFNSNKPSLIRTAT-WTLSN-LCRGKKPQPDWSVVSQALP-TLAKLIYSMDTETLV 275
Query: 998 MAEKILRHLNKMP 1010
A + +L+ P
Sbjct: 276 DACWAISYLSDGP 288
>pdb|2C2V|S Chain S, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|T Chain T, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|U Chain U, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|V Chain V, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 78
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 238 LTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVALKTTI 297
++ E+M +P SG+TY+R I E + G F P T L L N+A+K I
Sbjct: 10 ISFELMREPCITPSGITYDRKDIE---EHLQRVGH-FNPVTRSPLTQEQLIPNLAMKEVI 65
Query: 298 EEWKDRN 304
+ + N
Sbjct: 66 DAFISEN 72
>pdb|3L6X|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-Cadherin
pdb|3L6Y|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|C Chain C, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|E Chain E, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
Length = 584
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 326 LEAIKD-----LQTVCQRKQYNKVQVRNVGVLPLLTKLLEYKDRNVRCAAMELLRQLVVE 380
L+A+K LQ +C R K VR + +P+L LL++ + V A L+ +
Sbjct: 61 LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFG 120
Query: 381 DDEGKEMIAETMD 393
D+ ++ + D
Sbjct: 121 RDQDNKIAIKNCD 133
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,212,138
Number of Sequences: 62578
Number of extensions: 852238
Number of successful extensions: 2089
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 2060
Number of HSP's gapped (non-prelim): 45
length of query: 1019
length of database: 14,973,337
effective HSP length: 108
effective length of query: 911
effective length of database: 8,214,913
effective search space: 7483785743
effective search space used: 7483785743
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)