BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001733
(1019 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CAA7|PUB42_ARATH Putative U-box domain-containing protein 42 OS=Arabidopsis thaliana
GN=PUB42 PE=2 SV=1
Length = 1033
Score = 1093 bits (2827), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 561/1040 (53%), Positives = 727/1040 (69%), Gaps = 88/1040 (8%)
Query: 51 MELQTTKYTPANALEILQSLSKSISLGKDLVAKCKRGDHSMSDAELRSTMLQLLGVIRRM 110
ME+QT + +++I +SLS S+ + K LV K + + + S +LRS GV+++M
Sbjct: 1 MEIQTAESNVICSIDIFESLSDSVDVAKKLVEKSQESNEAESTTDLRSIEAGFEGVVKQM 60
Query: 111 GECLSLIPSSTFRGQEYAEVAVLSLSKEMLNAHFD--------------IQVLHTKELES 156
GE L IP STF +EY V + SLS EM NA I HT ++ S
Sbjct: 61 GETLQSIPESTFDEEEYIGVVIQSLSNEMQNATIGDGSKSEMINNGQQKISAKHTPDIVS 120
Query: 157 QMDLQAMEEQAPLELDLYSVSVEVSMNSSM-----NSKSYDMP----------------- 194
+ MEE DLY E S S M S+ D+P
Sbjct: 121 EQ----MEE------DLYPTDPEFSYESYMMYSESQSQMTDIPDIPSKSTDVSRQRKHGN 170
Query: 195 ----------LPIEYFGSTSLSSQ----------------------SSDHSTSRSIS--- 219
+P ST++SSQ SS+ S+ R
Sbjct: 171 HSESQSLVTEIPDIPSQSTNVSSQRKHGNLSKSQSQSTEIPDIPSQSSNASSQRKYGNLS 230
Query: 220 -----LPKVAQYIEPLYETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIF 274
LP+V Q++EP Y+ F CPLTKEIM+DPVT E+GVT ER A+ WF+ F S +I
Sbjct: 231 ESLSMLPQVTQFMEPPYQAFICPLTKEIMEDPVTTETGVTCERQAVIEWFDSFGNSDEIN 290
Query: 275 CPTTGKKLMSRGLNTNVALKTTIEEWKDRNDAERIKVSRAALSLAGSDRMVLEAIKDLQT 334
CP TG+KL + L+ NV LKT I+EWK RN+A RIKV+ AALSL GS+ MV++A++DLQ
Sbjct: 291 CPVTGQKLTTE-LSANVVLKTIIQEWKVRNEAARIKVAHAALSLGGSESMVIDALRDLQM 349
Query: 335 VCQRKQYNKVQVRNVGVLPLLTKLLEYKDRNVRCAAMELLRQLVVED-DEGKEMIAETMD 393
C+ K+YNKVQVR G++ LL + L Y+ ++VR ++ LR L E+ D+GKEMI +T+
Sbjct: 350 TCEGKEYNKVQVREAGIIQLLDRYLTYRSKDVRFELLKFLRTLADEETDDGKEMIVKTIT 409
Query: 394 ISILIKLLSSSHRPVRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAA 453
+S +IKLL SSH+PVRH + LLLELS ++ CEKIG+ G IL+L+T K+N +D FA+
Sbjct: 410 MSCVIKLLGSSHQPVRHAAQALLLELSKSQHACEKIGTARGAILMLVTAKYNRELDSFAS 469
Query: 454 EIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDSKIN 513
E +DQILRNLE+ P+NIK MAE+GLLEPL+ HL EGSEE Q+ MA+YL EI +GH+ K
Sbjct: 470 ETSDQILRNLEKCPENIKQMAESGLLEPLLGHLAEGSEETQVAMAAYLVEIDIGHEKKTY 529
Query: 514 VPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRIIH 573
V +A LI +V S N RR AFKAL IS +HP+ KILVE GI+++M EEMF + +
Sbjct: 530 VAEKACPALIGLVQSENIDARRAAFKALAHISLYHPNNKILVEVGIIKIMVEEMFTKRVF 589
Query: 574 NEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVH 633
++ MNS+ EAA ILANILESGLEH + +VN+HGHT+ SDY VYNII+MLKNS+PD+LN+
Sbjct: 590 SDLMNSRNEAATILANILESGLEHETFEVNTHGHTLGSDYFVYNIIHMLKNSSPDDLNID 649
Query: 634 LIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTLSPYLGHT 693
LIRIL L+KSP+ MATIVSVIKET+AS++++E+INNPHDEL V A+KLL L+PY+GHT
Sbjct: 650 LIRILLSLSKSPRAMATIVSVIKETDASFAMIELINNPHDELGVGALKLLIALTPYIGHT 709
Query: 694 LVERLCKTRGQPENLIQCPTETIHITEKQAVSAKFLAKLPHQNLTLNLALSARNVVPTIL 753
L ERLCKTRGQPENLIQCP E ITEK AVSAK LAKLPHQNLTLNLAL ++V IL
Sbjct: 710 LSERLCKTRGQPENLIQCPVEANQITEKHAVSAKLLAKLPHQNLTLNLALVNESIVSEIL 769
Query: 754 QTINLIQRSGTRTSRYASAYLEGLIGILVRFTTTLYEPQILFLARTHNFTSVFTELLMKT 813
I+LIQRSG RTSRYA+ +LEGL+GILVRFTTTLYEPQ+++LAR H+ TSVF +LLMKT
Sbjct: 770 HAIHLIQRSGARTSRYATDFLEGLVGILVRFTTTLYEPQMMYLARNHDLTSVFVDLLMKT 829
Query: 814 SCDEVQKLAAIGLENLSSESINLSKPPQIKSKKFMKFFSLPKSLSVGSSKKKSVSLCPVH 873
S DEVQ+L+A GLENLSS ++ LS+PPQ +S KFM S+P+S S+ SSKKK + +C +H
Sbjct: 830 SSDEVQRLSATGLENLSSTTMTLSRPPQPRSTKFMGSLSMPRSFSLRSSKKKQIEICAIH 889
Query: 874 RGACSSQNTFCLIDAKAVDRLLACLYHENVEVVEAALSALCTLLDEKVDVDKSVSMLSEV 933
RG CS++NTFCL++A A+ +LLACL + VEVVE+AL+A+CTLLD+KV+V+KS+SMLSE+
Sbjct: 890 RGVCSAKNTFCLVEANAITKLLACLQSDKVEVVESALAAICTLLDDKVEVEKSLSMLSEM 949
Query: 934 NAIQHVLNVVKEHRQEVLQQKSFWMIERFLVKGGNKQASDISQDRLLPATLVSAFHHGDV 993
NA+Q +LN VKEH++E L QK+FWMI++F+++GG+K AS+ISQDR+L LVSAFH GD
Sbjct: 950 NAVQLILNAVKEHKKESLLQKAFWMIDKFIIRGGDKYASEISQDRMLSGMLVSAFHRGDG 1009
Query: 994 NTRQMAEKILRHLNKMPNFS 1013
NTRQMAE ILR L+KMP+FS
Sbjct: 1010 NTRQMAENILRRLDKMPSFS 1029
>sp|Q9SFX2|PUB43_ARATH U-box domain-containing protein 43 OS=Arabidopsis thaliana GN=PUB43
PE=2 SV=1
Length = 811
Score = 491 bits (1264), Expect = e-137, Method: Compositional matrix adjust.
Identities = 300/820 (36%), Positives = 482/820 (58%), Gaps = 23/820 (2%)
Query: 201 GSTSLSSQSSDHSTSRSISLPKVAQYIEPLYETFYCPLTKEIMDDPVTIESGVTYERNAI 260
GS S SD+S+ + I+ +YE F CPLTK++M +PVT+E+G T+ER AI
Sbjct: 3 GSGSWDGSQSDNSS-------QFEPGIDNIYEAFICPLTKQVMHNPVTLENGQTFEREAI 55
Query: 261 TAWFEKFETSGD-IFCPTTGKKLMSRGLNTNVALKTTIEEWKDRNDAERIKVSRAALSLA 319
WF++ +G + CP T K+L L+ ++AL+ TIEEW+ RNDA ++ ++R +L L
Sbjct: 56 EKWFQECRENGQPLSCPITSKELSITDLSPSIALRNTIEEWRARNDALKLDIARQSLYLG 115
Query: 320 GSDRMVLEAIKDLQTVCQRKQYNKVQVRNVGVLPLLTKLLEYKDRNVRCAAMELLRQLVV 379
++ +L A+K+++ +C+ + + +V N ++ L+T +L+ VRC A++ L+ +V
Sbjct: 116 NAETNILLALKNVREICRNIRKIRQRVCNPQLVRLITDMLKSSSHEVRCKALQTLQVVVE 175
Query: 380 EDDEGKEMIAETMDISILIKLLSSSHRPVRHESLLLLLELSSTRSLCEKIGSIPGGILVL 439
D+E K ++AE + ++K LS R ++ +L ELS + +LCEKIGSI G I++L
Sbjct: 176 GDEESKAIVAEGDTVRTIVKFLSQEPSKGREAAVSVLFELSKSEALCEKIGSIHGAIILL 235
Query: 440 ITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMAS 499
+ + S +V E AD+ L NLER+ +N++ MA NG L+PL+ L EGS E ++ MA
Sbjct: 236 VGLTSSKSENVSTVEKADKTLTNLERSEENVRQMAINGRLQPLLAKLLEGSPETKVSMAF 295
Query: 500 YLGEIVLGHDSKINVPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGI 559
YLG + L +D K+ V S+LI ++ + + R A AL ISS S K+L+ GI
Sbjct: 296 YLGVLALNNDVKVIVAQTVGSSLIDLMRTRDMSQREAALGALNNISSFEGSAKLLINTGI 355
Query: 560 VQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNII 619
+ + +++F + P+ KE +A ILANI+ G + + V H T+VS+ +V N++
Sbjct: 356 LPPLIKDLFYVGPNQLPIRLKEVSATILANIVNIGYDFDKVPVGPHHQTLVSEEIVENLL 415
Query: 620 YMLKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVIN-NPHDELAVA 678
+ N+ P E+ L+ +L LT P + +VS I+ + A SL++ + + +D+L +A
Sbjct: 416 QLTSNTGP-EIQGKLLAVLVGLTSCPNSVINVVSAIRNSAAIISLVQFVEIHENDDLRLA 474
Query: 679 AIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCPTE-TIHITEKQAVSAKFLAKLPHQNL 737
+IKLL +SP++ L L T GQ +L+ +E T ITE+QA +A LA+LP ++L
Sbjct: 475 SIKLLHNISPHMSEELANALRSTVGQLGSLVSIISENTPTITEEQAAAAGLLAELPERDL 534
Query: 738 TLNLALSARNVVPTILQTINLIQRSGTRTSRYASAYLEGLIGILVRFTTTLY-EPQILFL 796
L + L I+ I I++ R R+ +LEGL+ IL R T L E
Sbjct: 535 VLTMRLLREGAFEKIISKIVGIRQGEIRGIRFERTFLEGLVSILARITFALTKETDATLF 594
Query: 797 ARTHNFTSVFTELLMKTSCDEVQKLAAIGLENLSSESINLSKPPQIKSKKF-MKFFS-LP 854
N S+F +LL S D +Q+ +A LENLS ES NL+K P++ + + FS L
Sbjct: 595 CCEKNLPSLFLDLLQSNSQDNIQRASATALENLSLESKNLTKIPELPPPTYCVSIFSCLS 654
Query: 855 KSLSVGSSKKKSVSLCPVHRGACSSQNTFCLIDAKAVDRLLACLYHENVEVVEAALSALC 914
K V + +C +H+G CS + +FCL++ +AVD+L+ L HEN +VV AL+AL
Sbjct: 655 KPPVV-------LGICKIHQGICSVRESFCLVEGQAVDKLVDLLDHENDKVVGPALAALS 707
Query: 915 TLLDEKVDVDKSVSMLSEVNAIQHVLNVVKEHRQEVLQQKSFWMIERFLVKGGNKQASDI 974
TLL++ +DV + V ++ E + I +LNV+ E+R E L+ ++ WM+ER L + A ++
Sbjct: 708 TLLEDGLDVVQGVRLIDEADGITPILNVLLENRTENLRIRAVWMVERILRI--EEIAREV 765
Query: 975 SQDRLLPATLVSAFHHGDVNTRQMAEKILRHLNKMPNFSA 1014
+++ + A LV AF + D TRQ+AEK LRH++K+PNFS
Sbjct: 766 GEEQNVTAALVDAFQNADFRTRQIAEKALRHIDKIPNFSG 805
>sp|Q9LM76|PUB44_ARATH U-box domain-containing protein 44 OS=Arabidopsis thaliana GN=PUB44
PE=1 SV=1
Length = 801
Score = 490 bits (1261), Expect = e-137, Method: Compositional matrix adjust.
Identities = 295/792 (37%), Positives = 477/792 (60%), Gaps = 20/792 (2%)
Query: 227 IEPLYETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSG-DIFCPTTGKKLMSR 285
++ +YE F CPLTKE+M DPVT+E+G T+ER AI WF++ SG CP T ++L S
Sbjct: 20 VDHIYEAFICPLTKEVMHDPVTLENGRTFEREAIEKWFKECRDSGRPPSCPLTSQELTST 79
Query: 286 GLNTNVALKTTIEEWKDRNDAERIKVSRAALSLAGSDRMVLEAIKDLQTVCQRKQYNKVQ 345
++ ++AL+ TIEEW+ RNDA ++ ++R +L L ++ +L+A+ ++ +C+ + N+
Sbjct: 80 DVSASIALRNTIEEWRSRNDAAKLDIARQSLFLGNAETDILQALMHVRQICRTIRSNRHG 139
Query: 346 VRNVGVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSSH 405
VRN ++ ++ +L+ VR A++ L+ +V DDE K ++AE + L+K LS
Sbjct: 140 VRNSQLIHMIIDMLKSTSHRVRYKALQTLQVVVEGDDESKAIVAEGDTVRTLVKFLSHEP 199
Query: 406 RPVRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLER 465
R ++ LL ELS + +LCEKIGSI G +++L+ + S +V E AD+ L N+ER
Sbjct: 200 SKGREAAVSLLFELSKSEALCEKIGSIHGALILLVGLTSSNSENVSIVEKADRTLENMER 259
Query: 466 NPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDSKINVPGRAASTLIRM 525
+ + ++ MA G L+PL+ L EGS E ++ MAS+LGE+ L +D K+ V S+L+ +
Sbjct: 260 SEEIVRQMASYGRLQPLLGKLLEGSPETKLSMASFLGELPLNNDVKVLVAQTVGSSLVDL 319
Query: 526 VHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAA 585
+ SG+ R A KAL +ISS S K+L+ GI+ + +++F +N P+ KE +A
Sbjct: 320 MRSGDMPQREAALKALNKISSFEGSAKVLISKGILPPLIKDLFYVGPNNLPIRLKEVSAT 379
Query: 586 ILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSP 645
ILANI+ G + T+VS+ V N+++++ N+ P + L+ +L LT P
Sbjct: 380 ILANIVNIGYDFDK-------ATLVSENRVENLLHLISNTGP-AIQCKLLEVLVGLTSCP 431
Query: 646 KPMATIVSVIKETEASYSLLEVIN-NPHDELAVAAIKLLTTLSPYLGHTLVERLCKTRGQ 704
K + +V IK + A SL++ I +D+L +A+IKLL LSP++ L + LC T GQ
Sbjct: 432 KTVPKVVYAIKTSGAIISLVQFIEVRENDDLRLASIKLLHNLSPFMSEELAKALCGTAGQ 491
Query: 705 PENLIQCPTETIHITEKQAVSAKFLAKLPHQNLTLNLALSARNVVPTILQTINLIQRSGT 764
+L+ +E ITE+QA +A LA+LP ++L L + I+ + I++
Sbjct: 492 LGSLVAIISEKTPITEEQAAAAGLLAELPDRDLGLTQEMLEVGAFEKIISKVFGIRQGDI 551
Query: 765 RTSRYASAYLEGLIGILVRFTTTL-YEPQILFLARTHNFTSVFTELLMKTSCDEVQKLAA 823
+ R+ + +LEGL+ IL R T E + + R H+ S+F LL D +Q ++A
Sbjct: 552 KGMRFVNPFLEGLVRILARITFVFNKEARAINFCREHDVASLFLHLLQSNGQDNIQMVSA 611
Query: 824 IGLENLSSESINLSKPPQIKSKKFM-KFFSLPKSLSVGSSKKKSVSLCPVHRGACSSQNT 882
+ LENLS ESI L++ P + FS + V + LC +H+G CS + T
Sbjct: 612 MALENLSLESIKLTRMPDPPPVNYCGSIFSCVRKPHVVN------GLCKIHQGICSLRET 665
Query: 883 FCLIDAKAVDRLLACLYHENVEVVEAALSALCTLLDEKVDVDKSVSMLSEVNAIQHVLNV 942
FCL++ AV++L+A L HENV+VVEAAL+AL +LL++ +DV+K V +L E + I+H+LNV
Sbjct: 666 FCLVEGGAVEKLVALLDHENVKVVEAALAALSSLLEDGLDVEKGVKILDEADGIRHILNV 725
Query: 943 VKEHRQEVLQQKSFWMIERFLVKGGNKQASDISQDRLLPATLVSAFHHGDVNTRQMAEKI 1002
++E+R E L +++ WM+ER L A ++++++ L A LV AF + D TRQ+AE
Sbjct: 726 LRENRTERLTRRAVWMVERILRI--EDIAREVAEEQSLSAALVDAFQNADFRTRQIAENA 783
Query: 1003 LRHLNKMPNFSA 1014
L+H++K+PNFS+
Sbjct: 784 LKHIDKIPNFSS 795
>sp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13
PE=1 SV=1
Length = 660
Score = 96.7 bits (239), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 107/397 (26%), Positives = 172/397 (43%), Gaps = 58/397 (14%)
Query: 223 VAQYIEPLYETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKL 282
+Q I + + F CP++ E+M DPV + SG TYER I W E G CP T + L
Sbjct: 249 ASQKIPVIPDDFRCPISLEMMRDPVIVSSGQTYERTCIEKWIE----GGHSTCPKTQQAL 304
Query: 283 MSRGLNTNVALKTTIEEWKDRNDAERIKVSRAALSLAGSDRMVLEAIKDLQTVCQRKQYN 342
S L N L++ I +W + ND E K + + + + + N
Sbjct: 305 TSTTLTPNYVLRSLIAQWCEANDIEPPKPPSSLRP------------RKVSSFSSPAEAN 352
Query: 343 KVQVRNVGVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLS 402
K++ L+ +L + R AA E +R L + + + IAE I +L+ LLS
Sbjct: 353 KIE-------DLMWRLAYGNPEDQRSAAGE-IRLLAKRNADNRVAIAEAGAIPLLVGLLS 404
Query: 403 SSHRPVRHESLLLLLELSSTRSLCEK-------IGSIPGGILVL----ITFKFNWSIDVF 451
+ ++ S+ LL L S+CE G+IPG + VL + + N + +F
Sbjct: 405 TPDSRIQEHSVTALLNL----SICENNKGAIVSAGAIPGIVQVLKKGSMEARENAAATLF 460
Query: 452 AAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVL--GHD 509
+ + D+ N + G + PL+ LNEG++ + + A+ L + + G+
Sbjct: 461 SLSVIDE----------NKVTIGALGAIPPLVVLLNEGTQRGKKDAATALFNLCIYQGNK 510
Query: 510 SKINVPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFI 569
K G TL R++ S A L +SSH I+ + V + E FI
Sbjct: 511 GKAIRAG-VIPTLTRLLTEPGSGMVDEALAILAILSSHPEGKAIIGSSDAVPSLVE--FI 567
Query: 570 RIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHG 606
R P N +E AAA+L ++ SG H ++ G
Sbjct: 568 RT--GSPRN-RENAAAVLVHLC-SGDPQHLVEAQKLG 600
>sp|Q681N2|PUB15_ARATH U-box domain-containing protein 15 OS=Arabidopsis thaliana GN=PUB15
PE=2 SV=2
Length = 660
Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 101/202 (50%), Gaps = 20/202 (9%)
Query: 234 FYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVAL 293
F CP+T EIM DPV I +G TYE+ +I WF+ +G CP T ++L L N AL
Sbjct: 294 FLCPITLEIMLDPVIIATGQTYEKESIQKWFD----AGHKTCPKTRQELDHLSLAPNFAL 349
Query: 294 KTTIEEWKDRN-----------DAERIKVSRAALSLAGSDRMVLE----AIKDLQTVCQR 338
K I +W ++N D++ + +L + LE ++K ++ + +
Sbjct: 350 KNLIMQWCEKNNFKIPEKEVSPDSQNEQKDEVSLLVEALSSSQLEEQRRSVKQMRLLARE 409
Query: 339 KQYNKVQVRNVGVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILI 398
N+V + N G +PLL +LL Y D ++ A+ L L + D+ K++I+ I +I
Sbjct: 410 NPENRVLIANAGAIPLLVQLLSYPDSGIQENAVTTLLNLSI-DEVNKKLISNEGAIPNII 468
Query: 399 KLLSSSHRPVRHESLLLLLELS 420
++L + +R R S L LS
Sbjct: 469 EILENGNREARENSAAALFSLS 490
>sp|Q9ZV31|PUB12_ARATH U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12
PE=2 SV=1
Length = 654
Score = 84.7 bits (208), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 102/380 (26%), Positives = 170/380 (44%), Gaps = 54/380 (14%)
Query: 232 ETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNV 291
E F CP++ E+M DPV + SG TYER I W E G + CP T + L S + N
Sbjct: 258 EEFRCPISLELMTDPVIVSSGQTYERECIKKWLE----GGHLTCPKTQETLTSDIMTPNY 313
Query: 292 ALKTTIEEWKDRNDAERIKVSRAALSLAGSDRMVLEAIKDLQTVCQRKQYNKVQVRNVGV 351
L++ I +W + N E K R +S S + D ++NK++
Sbjct: 314 VLRSLIAQWCESNGIEPPK--RPNISQPSSKASSSSSAPD-------DEHNKIE------ 358
Query: 352 LPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSSHRPVRHE 411
LL KL + + R AA E +R L +++ + IA + I +L+ LL+ S+ E
Sbjct: 359 -ELLLKLTSQQPEDRRSAAGE-IRLLAKQNNHNRVAIAASGAIPLLVNLLTISNDSRTQE 416
Query: 412 -SLLLLLELSSTRSLCEKI----GSIPGGILVL----ITFKFNWSIDVFAAEIADQILRN 462
++ +L LS + KI G++PG + VL + + N + +F+ + D+
Sbjct: 417 HAVTSILNLSICQENKGKIVYSSGAVPGIVHVLQKGSMEARENAAATLFSLSVIDE---- 472
Query: 463 LERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDSKINVPGRAAST- 521
N + G + PL+ L+EGS+ + + A+ L + + +K G+A
Sbjct: 473 ------NKVTIGAAGAIPPLVTLLSEGSQRGKKDAATALFNLCIFQGNK----GKAVRAG 522
Query: 522 ----LIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPM 577
L+R++ S + L +SSH + A V V+ + FIR P
Sbjct: 523 LVPVLMRLLTEPESGMVDESLSILAILSSHPDGKSEVGAADAVPVLVD--FIR--SGSPR 578
Query: 578 NSKEEAAAILANILESGLEH 597
N KE +AA+L ++ +H
Sbjct: 579 N-KENSAAVLVHLCSWNQQH 597
>sp|Q5VRH9|PUB12_ORYSJ U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica
GN=PUB12 PE=2 SV=1
Length = 611
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 98/392 (25%), Positives = 165/392 (42%), Gaps = 59/392 (15%)
Query: 208 QSSDHSTSRSISLPKVAQYIEPLYETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKF 267
++D T+RS S+ + I + F CP++ E+M DPV + SG TYER+ I W +
Sbjct: 209 HANDALTTRSASIKHRSPIIP---DEFRCPISLELMQDPVIVSSGQTYERSCIQKWLD-- 263
Query: 268 ETSGDIFCPTTGKKLMSRGLNTNVALKTTIEEWKDRNDAERIKVSRAALSLAGSDRMVLE 327
SG CP T + L L N LK+ I +W + N +E
Sbjct: 264 --SGHKTCPKTQQPLSHTSLTPNFVLKSLISQWCEANG--------------------IE 301
Query: 328 AIKDLQTVCQRKQYNKVQVRNVGVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEM 387
K+ Q +K + G++ L+ +L R AA E +R L + +
Sbjct: 302 LPKNKQNSRDKKAAKSSDYDHAGLVSLMNRLRSGNQDEQRAAAGE-IRLLAKRNVNNRIC 360
Query: 388 IAETMDISILIKLLSSSHRPVRHESLLLLLELS---STRSLCEKIGSIPGGILVLITFKF 444
IAE I +L+ LLSSS + ++ LL LS + ++ +IP + VL T
Sbjct: 361 IAEAGAIPLLVNLLSSSDPRTQEHAVTALLNLSIHENNKASIVDSHAIPKIVEVLKTGSM 420
Query: 445 ----NWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASY 500
N + +F+ + D+ N + G + PL++ L +GS + + A+
Sbjct: 421 ETRENAAATLFSLSVVDE----------NKVTIGAAGAIPPLINLLCDGSPRGKKDAATA 470
Query: 501 LGEIVLGHDSKINVPGRAASTLIRMVHSGNSLTRRIAFK-----ALMQISSHHPSCKILV 555
+ + + +K+ RA I ++H N L +L+ I + +P KI+
Sbjct: 471 IFNLCIYQGNKV----RAVKAGI-VIHLMNFLVDPTGGMIDEALSLLSILAGNPEGKIV- 524
Query: 556 EAGIVQVMAEEMFIRIIHNEPMNSKEEAAAIL 587
I + + +I ++E AAAIL
Sbjct: 525 ---IARSEPIPPLVEVIKTGSPRNRENAAAIL 553
>sp|Q8VZ40|PUB14_ARATH U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14
PE=1 SV=1
Length = 632
Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 107/391 (27%), Positives = 169/391 (43%), Gaps = 47/391 (12%)
Query: 204 SLSSQSSDHSTSRSISLPKVAQYIEPLY-ETFYCPLTKEIMDDPVTIESGVTYERNAITA 262
++ S D ST I V+++ P+ E F CP++ E+M DPV + +G TYER++I
Sbjct: 225 TMESSDPDPSTGSRI----VSRHRSPVIPEYFRCPISLELMKDPVIVSTGQTYERSSIQK 280
Query: 263 WFEKFETSGDIFCPTTGKKLMSRGLNTNVALKTTIEEWKDRNDAE--RIKVSRAALSLAG 320
W + +G CP + + L+ GL N LK+ I W + N E + + S + G
Sbjct: 281 WLD----AGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGIELPQNQGSCRTTKIGG 336
Query: 321 SDRMVLEAIKDLQTVCQRKQYNKVQVRNVGVLPLLTKLLEYKDRNVRCAAMELLRQLVVE 380
S + C R VL LL KL R AA E LR L
Sbjct: 337 SS----------SSDCDR----------TFVLSLLEKLANGTTEQQRAAAGE-LRLLAKR 375
Query: 381 DDEGKEMIAETMDISILIKLLSSSHRPVRHESLLLLLELSSTRSLCEKIGSI--PGGILV 438
+ + + IAE I +L++LLSS + S+ LL LS G+I G I
Sbjct: 376 NVDNRVCIAEAGAIPLLVELLSSPDPRTQEHSVTALLNLSINEG---NKGAIVDAGAITD 432
Query: 439 LITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMA 498
++ N S++ A E A L +L +N + G ++ L+ L EG+ + + A
Sbjct: 433 IVEVLKNGSME--ARENAAATLFSLSVIDENKVAIGAAGAIQALISLLEEGTRRGKKDAA 490
Query: 499 SYLGEIVL--GHDSKINVPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVE 556
+ + + + G+ S+ V G L R++ A L +S++ + E
Sbjct: 491 TAIFNLCIYQGNKSRA-VKGGIVDPLTRLLKDAGGGMVDEALAILAILSTNQEGKTAIAE 549
Query: 557 AGIVQVMAEEMFIRIIHNEPMNSKEEAAAIL 587
A + V+ E II ++E AAAIL
Sbjct: 550 AESIPVLVE-----IIRTGSPRNRENAAAIL 575
>sp|Q9XIJ5|PUB18_ARATH U-box domain-containing protein 18 OS=Arabidopsis thaliana GN=PUB18
PE=2 SV=1
Length = 697
Score = 77.0 bits (188), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 109/257 (42%), Gaps = 34/257 (13%)
Query: 208 QSSDHSTSRSISLPKVAQYIEPL-YETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEK 266
+ DH + K I L E CP++ EIM DPV IE+G TY+R++IT WF
Sbjct: 265 ERDDHHNHHEDGIKKDHDLIRGLKVEDLLCPISLEIMTDPVVIETGHTYDRSSITKWF-- 322
Query: 267 FETSGDIFCPTTGKKLMSRGLNTNVALKTTIEEWKDRNDAERIKVSRAALS--------- 317
SG+I CP TGK L S L NV+++ I + N +SR S
Sbjct: 323 --GSGNITCPITGKILTSTELVDNVSVRQVIRKHCKTNGIVLAGISRRRKSHDDVVPESL 380
Query: 318 -----------------LAGSDRMVLEAIKDLQTVCQRKQYNKVQVRNVGVLPLLTKLLE 360
+ G + M+ A+++++ + +N+ + G + L KLL
Sbjct: 381 AAKGAGKLIAKFLTSELINGGEEMIYRAVREIRVQTKTSSFNRSCLVKAGAVTPLLKLLS 440
Query: 361 YKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSSHRP-VRHESLLLLLEL 419
D ++ AM + L + GK IA + IL+++L+ + R S L L
Sbjct: 441 SVDIRIQENAMAGILNL-SKHVTGKSKIAGE-GLKILVEILNEGAKTETRLYSASALFYL 498
Query: 420 SSTRSLCEKIGSIPGGI 436
SS IG P I
Sbjct: 499 SSVEDYSRLIGENPDAI 515
>sp|O80742|PUB19_ARATH U-box domain-containing protein 19 OS=Arabidopsis thaliana GN=PUB19
PE=2 SV=1
Length = 686
Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 79/302 (26%), Positives = 125/302 (41%), Gaps = 61/302 (20%)
Query: 232 ETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNV 291
+ CP++ EIM DPV +ESG TY+R++IT WF SG+I CP TGK L+S L N
Sbjct: 280 DDLRCPISLEIMSDPVVLESGHTYDRSSITKWF----ASGNITCPKTGKTLVSTVLVDNF 335
Query: 292 ALKTTIEEWKDRND-------------AERIKVSRAALSLA---------GSDRMVLEAI 329
++K I+ + +N AE + A A G + +++A+
Sbjct: 336 SVKQVIQSYSKQNGVVMGQKGKKKVDVAESLAAEEAGKLTAEFLAGELIKGDEEEMVKAL 395
Query: 330 KDLQTVCQRKQYNKVQVRNVGVLPLLTKLLEYKDRNVRCAAMELLRQL----------VV 379
+++ + + + + + GV+ L K+L D ++ AM + L V
Sbjct: 396 VEIRILTKTSTFYRSCLVEAGVVESLMKILRSDDPRIQENAMAGIMNLSKDIAGKTRIVG 455
Query: 380 EDDEGKEMIAETMDISILIKLLSSSHRPVRHESLLLLLELSSTRSLCEKIGSIPGGILVL 439
ED G +I E ++ + R R + L LSS IG I I L
Sbjct: 456 EDGGGLRLIVEVLN--------DGARRESRQYAAAALFYLSSLGDYSRLIGEISDAIPGL 507
Query: 440 ITFKFNWSIDVFAAEIADQILRN--------LERNPDNIKCMAENGLLEPLMHHLNEGSE 491
+ V + + D RN L PDN + G++ L+ + SE
Sbjct: 508 VRI-------VKSCDYGDSAKRNALIAIRSLLMNQPDNHWRILAAGIVPVLLDLVK--SE 558
Query: 492 EI 493
EI
Sbjct: 559 EI 560
>sp|Q6EUK7|PUB04_ORYSJ U-box domain-containing protein 4 OS=Oryza sativa subsp. japonica
GN=PUB4 PE=2 SV=1
Length = 728
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 95/403 (23%), Positives = 167/403 (41%), Gaps = 91/403 (22%)
Query: 234 FYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVAL 293
F CP++ ++M DPV +G TY+R +I W E+ G CP +G+ L L N AL
Sbjct: 301 FSCPISLDLMRDPVVASTGQTYDRPSIIQWIEE----GHSTCPNSGQTLADHRLVPNRAL 356
Query: 294 KTTIEEW-----KDRNDAERIKVSRAALSLAGSDRMVLEAIKDLQTVCQRKQYNKVQVRN 348
++ I +W + E + ++ + S R +EA NK R
Sbjct: 357 RSLISQWCGVYGLQYDSPESNEGMAECVAASCSSRAAMEA-------------NKATAR- 402
Query: 349 VGVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSSHRPV 408
+L ++LE NV+ A + +R L + + IA+ I +L +LL S+
Sbjct: 403 -----ILVRMLEDGSENVKAVAAKEIRLLAKTGKQNRAFIADLGAIPLLCRLLLSNDWMA 457
Query: 409 RHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPD 468
+ ++ LL LS +F P+
Sbjct: 458 QENAVTALLNLS-----------------------------IF--------------EPN 474
Query: 469 NIKCMAENGLLEPLMHHLNEG-SEEIQMEMASYLGEIVLGHDSK---INVPGRAASTLIR 524
+ M + G L ++ L G + E + A+ L + + H+ K +N PG A L
Sbjct: 475 KGRIMEQEGCLRLIVGVLQNGWTTEAKENAAATLFSLSVVHNFKKLIMNEPG-AVEELAS 533
Query: 525 MVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAA 584
M+ G S ++ A AL +S+H S ++E+ V + I+ + N+ ++ EEAA
Sbjct: 534 MLTKGTSRGKKDAVMALFNLSTHPESSARMLESCAVVAL-----IQSLRNDTVS--EEAA 586
Query: 585 AILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTP 627
LA +++ H V S S+ V+ +++ +++ TP
Sbjct: 587 GALALLMKQPSIVH--LVGS------SETVITSLVGLMRRGTP 621
>sp|Q8GUG9|PUB11_ARATH U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11
PE=2 SV=2
Length = 612
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 87/371 (23%), Positives = 158/371 (42%), Gaps = 70/371 (18%)
Query: 234 FYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVAL 293
F CP++ E+M DPV + +G TYER I W + G++ CP T +KL + L N L
Sbjct: 245 FLCPVSLELMKDPVIVATGQTYERAYIQRWID----CGNLTCPKTQQKLENFTLTPNYVL 300
Query: 294 KTTIEEWKDRNDAERIKVSRAALSLAGSDRMVLEAIKDLQTVCQRKQYNKVQVRNVG--- 350
++ I W ++ E Q Y + +N G
Sbjct: 301 RSLISRWCAEHNIE-----------------------------QPAGYINGRTKNSGDMS 331
Query: 351 VLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSSHRPVRH 410
V+ L + L + R A+ +R L + + +IAE I +L+ LL+S +
Sbjct: 332 VIRALVQRLSSRSTEDRRNAVSEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVATQE 391
Query: 411 ESLLLLLELS---STRSLCEKIGSIPGGILVL----ITFKFNWSIDVFAAEIADQILRNL 463
++ +L LS + + L G++ + VL + + N + +F+ +AD+
Sbjct: 392 NAITCVLNLSIYENNKELIMFAGAVTSIVQVLRAGTMEARENAAATLFSLSLADE----- 446
Query: 464 ERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDSKINVPGRA----- 518
N + +G + L+ L G+ + + A+ L + + H +K GRA
Sbjct: 447 -----NKIIIGGSGAIPALVDLLENGTPRGKKDAATALFNLCIYHGNK----GRAVRAGI 497
Query: 519 ASTLIRMVHSGNSLTRRIAFKALMQIS--SHHPSCKILVEAGIVQVMAEEMFIRIIHNEP 576
+ L++M+ +S R+ +AL +S +++ K + IV+ I I+ +
Sbjct: 498 VTALVKMLS--DSTRHRMVDEALTILSVLANNQDAK----SAIVKANTLPALIGILQTDQ 551
Query: 577 MNSKEEAAAIL 587
++E AAAIL
Sbjct: 552 TRNRENAAAIL 562
>sp|Q0IMG9|SL11_ORYSJ E3 ubiquitin-protein ligase SPL11 OS=Oryza sativa subsp. japonica
GN=SPL11 PE=1 SV=2
Length = 694
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 91/364 (25%), Positives = 148/364 (40%), Gaps = 49/364 (13%)
Query: 212 HSTSRSISLPKVAQYIEPLYETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSG 271
+ SR I++P + F CP++ E+M DPV + +G TYER I W SG
Sbjct: 265 NGDSRPITIP----------DEFRCPISLELMKDPVIVSTGQTYERACIEKWI----ASG 310
Query: 272 DIFCPTTGKKLMSRGLNTNVALKTTIEEWKDRNDAERIKVS----RAALSLAGSDRMVLE 327
CPTT +K+ + L N L++ I +W + N E K S + + + S+R ++
Sbjct: 311 HHTCPTTQQKMSTSALTPNYVLRSLISQWCETNGMEPPKRSTQPNKPTPACSSSERANID 370
Query: 328 AI----------------KDLQTVCQRKQYNKVQVRNVGVLPLLTKLLEYKDRNVRCAAM 371
A+ +L+ + +R N++ + G +PLL LL D + A+
Sbjct: 371 ALLSKLCSPDTEEQRSAAAELRLLAKRNANNRICIAEAGAIPLLLSLLSSSDLRTQEHAV 430
Query: 372 ELLRQLVVEDDEGKEMIAETMDISILIKLLSSSHRPVRHESLLLLLELS---STRSLCEK 428
L L + +D +I+ SI + +L + R + L LS +
Sbjct: 431 TALLNLSIHEDNKASIISSGAVPSI-VHVLKNGSMEARENAAATLFSLSVIDEYKVTIGG 489
Query: 429 IGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNE 488
+G+IP +++L D AA L NL N GL+ PL+ L
Sbjct: 490 MGAIPALVVLLGEGSQRGKKDAAAA------LFNLCIYQGNKGRAIRAGLV-PLIMGLVT 542
Query: 489 GSEEIQMEMASYLGEIVLGHDSKINVPGRA--ASTLIRMVHSGNSLTRRIAFKALMQISS 546
M+ A + I+ H G A L+ M+ SG R A ++ + S
Sbjct: 543 NPTGALMDEAMAILSILSSHPEGKAAIGAAEPVPVLVEMIGSGTPRNRENAAAVMLHLCS 602
Query: 547 --HH 548
HH
Sbjct: 603 GEHH 606
>sp|A2ZLU6|SL11_ORYSI Protein spotted leaf 11 OS=Oryza sativa subsp. indica GN=SPL11 PE=1
SV=2
Length = 694
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 91/364 (25%), Positives = 148/364 (40%), Gaps = 49/364 (13%)
Query: 212 HSTSRSISLPKVAQYIEPLYETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSG 271
+ SR I++P + F CP++ E+M DPV + +G TYER I W SG
Sbjct: 265 NGDSRPITIP----------DEFRCPISLELMKDPVIVSTGQTYERACIEKWI----ASG 310
Query: 272 DIFCPTTGKKLMSRGLNTNVALKTTIEEWKDRNDAERIKVS----RAALSLAGSDRMVLE 327
CPTT +K+ + L N L++ I +W + N E K S + + + S+R ++
Sbjct: 311 HHTCPTTQQKMSTSALTPNYVLRSLISQWCETNGMEPPKRSTQPNKPTPACSSSERANID 370
Query: 328 AI----------------KDLQTVCQRKQYNKVQVRNVGVLPLLTKLLEYKDRNVRCAAM 371
A+ +L+ + +R N++ + G +PLL LL D + A+
Sbjct: 371 ALLSKLCSPDTEEQRSAAAELRLLAKRNANNRICIAEAGAIPLLLSLLSSSDLRTQEHAV 430
Query: 372 ELLRQLVVEDDEGKEMIAETMDISILIKLLSSSHRPVRHESLLLLLELS---STRSLCEK 428
L L + +D +I+ SI + +L + R + L LS +
Sbjct: 431 TALLNLSIHEDNKASIISSGAVPSI-VHVLKNGSMEARENAAATLFSLSVIDEYKVTIGG 489
Query: 429 IGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNE 488
+G+IP +++L D AA L NL N GL+ PL+ L
Sbjct: 490 MGAIPALVVLLGEGSQRGKKDAAAA------LFNLCIYQGNKGRAIRAGLV-PLIMGLVT 542
Query: 489 GSEEIQMEMASYLGEIVLGHDSKINVPGRA--ASTLIRMVHSGNSLTRRIAFKALMQISS 546
M+ A + I+ H G A L+ M+ SG R A ++ + S
Sbjct: 543 NPTGALMDEAMAILSILSSHPEGKAAIGAAEPVPVLVEMIGSGTPRNRENAAAVMLHLCS 602
Query: 547 --HH 548
HH
Sbjct: 603 GEHH 606
>sp|Q9C7R6|PUB17_ARATH U-box domain-containing protein 17 OS=Arabidopsis thaliana GN=PUB17
PE=2 SV=1
Length = 729
Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 85/349 (24%), Positives = 135/349 (38%), Gaps = 77/349 (22%)
Query: 223 VAQYIEPLYET----FYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTT 278
VAQ I + T F CP++ ++M DPV I +G TY+RN+I W E+ G CP T
Sbjct: 294 VAQEIGDTFITVPKDFVCPISLDLMTDPVIISTGQTYDRNSIARWIEE----GHCTCPKT 349
Query: 279 GKKLMSRGLNTNVALKTTIEEWKDRN----DAERIKVSRAALSLAGSDRMVLEAIKDLQT 334
G+ LM + N ALK I +W + ++E + + A + +EA
Sbjct: 350 GQMLMDSRIVPNRALKNLIVQWCTASGISYESEFTDSPNESFASALPTKAAVEA------ 403
Query: 335 VCQRKQYNKVQVRNVGVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDI 394
N + +L K L + + A +R L E + IAE I
Sbjct: 404 -------------NKATVSILIKYLADGSQAAQTVAAREIRLLAKTGKENRAYIAEAGAI 450
Query: 395 SILIKLLSSSHRPVRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAE 454
L +LL+S + + S+ +L LS
Sbjct: 451 PHLCRLLTSENAIAQENSVTAMLNLSI--------------------------------- 477
Query: 455 IADQILRNLERNPDNIKCMAENGLLEPLMHHLNEG-SEEIQMEMASYLGEIVLGHDSK-- 511
E+N I M E LE ++ L G + E Q A+ L + H+ K
Sbjct: 478 --------YEKNKSRI--MEEGDCLESIVSVLVSGLTVEAQENAAATLFSLSAVHEYKKR 527
Query: 512 INVPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIV 560
I + + L ++ +G ++ A AL +S+H +C ++E G V
Sbjct: 528 IAIVDQCVEALALLLQNGTPRGKKDAVTALYNLSTHPDNCSRMIEGGGV 576
>sp|Q9C9A6|PUB10_ARATH U-box domain-containing protein 10 OS=Arabidopsis thaliana GN=PUB10
PE=2 SV=1
Length = 628
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 78/321 (24%), Positives = 138/321 (42%), Gaps = 57/321 (17%)
Query: 204 SLSSQSSDHSTSRSISLPKVAQYIEPLYETFYCPLTKEIMDDPVTIESGVTYERNAITAW 263
+++ S D S ++++P E F CP++ E+M DP + +G TYER+ I W
Sbjct: 227 AVTENSDDSQKSDNLTIP----------EDFLCPISLELMKDPAIVSTGQTYERSFIQRW 276
Query: 264 FEKFETSGDIFCPTTGKKLMSRGLNTNVALKTTIEEWKDRNDAE--------RIKVSRAA 315
+ G++ CP T +KL + L N L++ I +W +++ E R K S +
Sbjct: 277 ID----CGNLSCPKTQQKLENFTLTPNYVLRSLISQWCTKHNIEQPGGYMNGRTKNSDGS 332
Query: 316 L-SLAGS-----------------DRMVLEAIKDLQTVCQRKQYNKVQVRNVGVLPLLTK 357
L+G DR A+ +++++ +R N++ + G +P+L K
Sbjct: 333 FRDLSGDMSAIRALVCKLSSQSIEDRRT--AVSEIRSLSKRSTDNRILIAEAGAIPVLVK 390
Query: 358 LL------EYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSSHRPVRHE 411
LL E ++ V C +L + E + KE+I ++ ++ +L + R
Sbjct: 391 LLTSDGDTETQENAVTC----ILNLSIYEHN--KELIMLAGAVTSIVLVLRAGSMEAREN 444
Query: 412 SLLLLLELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIK 471
+ L LS IG+ G I+ L+ S V + A L NL N
Sbjct: 445 AAATLFSLSLADENKIIIGA-SGAIMALVDLLQYGS--VRGKKDAATALFNLCIYQGNKG 501
Query: 472 CMAENGLLEPLMHHLNEGSEE 492
G+++PL+ L + S E
Sbjct: 502 RAVRAGIVKPLVKMLTDSSSE 522
>sp|Q9C7G1|PUB45_ARATH U-box domain-containing protein 45 OS=Arabidopsis thaliana GN=PUB45
PE=1 SV=1
Length = 768
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 91/201 (45%), Gaps = 33/201 (16%)
Query: 232 ETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNV 291
E CP++ ++M DPV I SG TYER I WF + G CP T ++L L N
Sbjct: 281 EELRCPISLQLMYDPVIIASGQTYERICIEKWF----SDGHNTCPKTHQQLSHLCLTPNY 336
Query: 292 ALKTTIEEWKDRNDAE---------RIKVSRAALSLAGS------DRMVLEAIKDLQTV- 335
+K I W ++N + + R ALS++ S R+ +KD++ V
Sbjct: 337 CVKALISSWCEQNGVQVPDGPPESLDLNYWRLALSVSESTDTRSAKRVGSCKLKDVKVVP 396
Query: 336 -----------CQRKQYNKVQVRNV-GVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDE 383
C+ +Y + QV V LLT L + +C +E +R L+ +D+E
Sbjct: 397 LEESGTIKEEACE-SEYQEDQVTLVERCTELLTTLTDVDTLRKKCRVVEQIRVLLKDDEE 455
Query: 384 GKEMIAETMDISILIKLLSSS 404
+ ++ E + L++ L S+
Sbjct: 456 ARILMGENGCVEALLQFLGSA 476
>sp|O23225|PUB5_ARATH U-box domain-containing protein 5 OS=Arabidopsis thaliana GN=PUB5
PE=2 SV=3
Length = 718
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 230 LYETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNT 289
L E F C L++ +M DPV I SG T+ER I WF++ G+ CP + +KL L
Sbjct: 219 LPEKFKCTLSRTVMYDPVIISSGNTFERMQIQKWFDE----GNDSCPISKRKLDDFTLKP 274
Query: 290 NVALKTTIEEWKDRN 304
NV LK+ I EW +N
Sbjct: 275 NVELKSQISEWCAKN 289
>sp|D1FP53|LIN_MEDTR Putative E3 ubiquitin-protein ligase LIN OS=Medicago truncatula
GN=LIN PE=2 SV=1
Length = 1488
Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 234 FYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGL-NTNVA 292
F CP+T +I DPVT+E+G TYER AI W +G+ CP T + L + L TN
Sbjct: 517 FVCPITGQIFSDPVTLETGQTYERKAIQEWL----GTGNTTCPITRQALSANILPKTNYV 572
Query: 293 LKTTIEEWKDRN 304
LK I WK++N
Sbjct: 573 LKRLIVSWKEQN 584
>sp|D1FP57|LIN2_LOTJA Putative E3 ubiquitin-protein ligase LIN-2 OS=Lotus japonicus
GN=LIN PE=1 SV=1
Length = 1485
Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 234 FYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGL-NTNVA 292
F CP+T +I DPVT+E+G TYER AI W +G+ CP T + L + L TN
Sbjct: 515 FVCPITGQIFCDPVTLETGQTYERKAIQEWLR----TGNTTCPITRQPLSASILPKTNYV 570
Query: 293 LKTTIEEWKDRN 304
LK I WK++N
Sbjct: 571 LKRLITSWKEQN 582
>sp|C6L7U1|LIN1_LOTJA Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus
GN=CERBERUS PE=2 SV=2
Length = 1485
Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 234 FYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGL-NTNVA 292
F CP+T +I DPVT+E+G TYER AI W +G+ CP T + L + L TN
Sbjct: 515 FVCPITGQIFCDPVTLETGQTYERKAIQEWLR----TGNTTCPITRQPLSASILPKTNYV 570
Query: 293 LKTTIEEWKDRN 304
LK I WK++N
Sbjct: 571 LKRLITSWKEQN 582
>sp|Q9SRT0|PUB9_ARATH U-box domain-containing protein 9 OS=Arabidopsis thaliana GN=PUB9
PE=1 SV=1
Length = 460
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 92/374 (24%), Positives = 161/374 (43%), Gaps = 57/374 (15%)
Query: 232 ETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNV 291
E F CPL+ E+M DPV + SG TY++ I W +SG+ CP T + L L N+
Sbjct: 76 EEFRCPLSNELMRDPVVLASGQTYDKLFIQKWL----SSGNRTCPKTQQVLPHTALTPNL 131
Query: 292 ALKTTIEEWKDRNDAERIKVSRAALSLAGSDRMVLEAIKDLQTVCQRKQYNKVQVRNVGV 351
++ I +W +N E S+ +L D V T R+ +N
Sbjct: 132 LIREMISKWCKKNGLE--TKSQYHPNLVNEDETV--------TRSDREIFNS-------- 173
Query: 352 LPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMD-ISILIKLLSSSHRP--- 407
LL K+ ++ + AA E LR L + E + + E+ D I+ L+ L P
Sbjct: 174 --LLCKVSSSNLQDQKSAAKE-LRLLTRKGTEFRALFGESPDEITRLVNPLLHGSNPDEK 230
Query: 408 VRHESLLLLLEL-----SSTRSLCEKIGSIPGGILVL----ITFKFNWSIDVFAAEIADQ 458
++ + + LL + S+ + +CE IP I L + + N + +F D
Sbjct: 231 LQEDVVTTLLNISIHDDSNKKLVCENPNVIPLLIDALRRGTVATRSNAAAAIFTLSALDS 290
Query: 459 ILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDSKIN-VPGR 517
N + ++G+L+PL+ L EG+ ++A+ + + + H+++ V
Sbjct: 291 ----------NKVLIGKSGILKPLIDLLEEGNPLAIKDVAAAIFTLCIAHENRSRAVRDG 340
Query: 518 AASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRIIH-NEP 576
A L + + +G + +A A++ +H + + L E G V ++I +E
Sbjct: 341 AVRVLGKKISNGLYVDELLAILAML--VTHWKAVEELGELGGVS-----WLLKITRESEC 393
Query: 577 MNSKEEAAAILANI 590
+KE A IL I
Sbjct: 394 KRNKENAIVILHTI 407
>sp|Q9FXA4|PUB26_ARATH U-box domain-containing protein 26 OS=Arabidopsis thaliana GN=PUB26
PE=2 SV=1
Length = 421
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 102/240 (42%), Gaps = 45/240 (18%)
Query: 234 FYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVAL 293
F CP++ ++M DPVTI +G TY+R +I +W G+ CP T L L N L
Sbjct: 18 FRCPISLDLMSDPVTISTGQTYDRTSIDSWI----AMGNTTCPVTRVALSDFTLIPNHTL 73
Query: 294 KTTIEEW---KDRNDAERIKVSRAALSLAGSDRMVLEAIKDLQTVCQRKQYNKVQVRNVG 350
+ I+EW N ERI + +D + +++ L + V VR+
Sbjct: 74 RRLIQEWCVANRSNGVERIPTPKQP-----ADPI---SVRSLLSQASAITGTHVSVRS-- 123
Query: 351 VLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSS------ 404
R AA+ LR L + ++ + +IA IL+++L +
Sbjct: 124 ----------------RAAAIRRLRGLARDSEKNRVLIAGHNAREILVRILFADIETTSL 167
Query: 405 --HRPVRHESLLLLLELSSTRSLCEKIGSIPG--GILVLITFKFNWSIDVFAAEIADQIL 460
+LL+LL ++ T CE + S P G + + F + I V AA + + +L
Sbjct: 168 SSELVSESLALLVLLHMTETE--CEAVASDPSRVGFMTRLLFDSSIEIRVNAAALIEMVL 225
>sp|Q5UQ40|UBC4_MIMIV Probable bifunctional E2/E3 enzyme R795 OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_R795 PE=3 SV=1
Length = 1297
Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 46/77 (59%), Gaps = 7/77 (9%)
Query: 228 EPLYETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGL 287
EPL E F CP++ EIM+ PV + G TYE++ I WFE TS P T +K+ S+ +
Sbjct: 678 EPLQE-FLCPISHEIMEHPVVAKDGFTYEKSNILKWFENKSTS-----PMTNEKI-SKKI 730
Query: 288 NTNVALKTTIEEWKDRN 304
N LK+ I +WK+ N
Sbjct: 731 CDNKVLKSIIRDWKENN 747
>sp|Q8GZ84|PUB36_ARATH U-box domain-containing protein 36 OS=Arabidopsis thaliana GN=PUB36
PE=2 SV=2
Length = 435
Score = 60.5 bits (145), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 229 PLYETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLN 288
P Y F CP+T +IM+DP G TYE AI+ WFE+ G P K+L L
Sbjct: 354 PQY--FICPITHDIMEDPHVAADGFTYEGEAISRWFER----GHETSPMINKRLPHTSLV 407
Query: 289 TNVALKTTIEEW 300
N+AL++ I+EW
Sbjct: 408 PNLALRSAIQEW 419
>sp|Q8S8S7|PUB34_ARATH U-box domain-containing protein 34 OS=Arabidopsis thaliana GN=PUB34
PE=3 SV=1
Length = 801
Score = 60.5 bits (145), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 234 FYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVAL 293
++CP+ +EIM++P G TYER AI AW EK S P T +KL L N L
Sbjct: 729 YFCPILREIMEEPEIAADGFTYERKAILAWLEKHNIS-----PVTRQKLDHFKLTPNHTL 783
Query: 294 KTTIEEWKDR 303
++ I +WK R
Sbjct: 784 RSAIRDWKSR 793
>sp|Q9LT79|PUB25_ARATH U-box domain-containing protein 25 OS=Arabidopsis thaliana GN=PUB25
PE=2 SV=1
Length = 421
Score = 60.5 bits (145), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 92/222 (41%), Gaps = 35/222 (15%)
Query: 234 FYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVAL 293
F CP++ E+M DPVT+ +G TY+R +I +W + CP T L L N L
Sbjct: 18 FRCPISLELMQDPVTVCTGQTYDRASIESW---VSIGNNTTCPVTRAPLSDFTLIPNHTL 74
Query: 294 KTTIEEW---KDRNDAERIKVSRAALSLAGSDRMVLEAIKDLQTVCQRKQYNKVQVRNVG 350
+ I+EW N ERI + +++ L + V VR+
Sbjct: 75 RRLIQEWCVANRSNGVERIPTPKQPADPT--------SVRALLSQASAITGTHVSVRS-- 124
Query: 351 VLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSS--SHRPV 408
R AA+ LR + D+ + +IA ILIK+L S + +
Sbjct: 125 ----------------RAAALRRLRGFARDSDKNRVLIAAHNATEILIKILFSETTSSEL 168
Query: 409 RHESLLLLLELSSTR-SLCEKIGSIPGGILVLITFKFNWSID 449
ESL LL+ L T + I S PG + L F+ SI+
Sbjct: 169 VSESLALLVMLPITEPNQFVSISSDPGRVEFLTRLLFDSSIE 210
>sp|Q84TG3|PUB23_ARATH E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana GN=PUB23
PE=1 SV=1
Length = 411
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 64/145 (44%), Gaps = 16/145 (11%)
Query: 234 FYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVAL 293
F CP++ EIM DPV + +G+TY+R++I W + + CP T + + L N L
Sbjct: 16 FLCPISLEIMKDPVIVSTGITYDRDSIEKWLFAGKKNS---CPVTKQDITDADLTPNHTL 72
Query: 294 KTTIEEWKDRN---DAERIKVSRAALSLAGSDRMV----------LEAIKDLQTVCQRKQ 340
+ I+ W N ERI R + + ++++ ++ +K L+ +
Sbjct: 73 RRLIQSWCTLNASYGVERIPTPRPPICKSEIEKLIRDSASSHENQVKCLKRLRQIVSENA 132
Query: 341 YNKVQVRNVGVLPLLTKLLEYKDRN 365
NK + GV L ++ N
Sbjct: 133 TNKRCLEAAGVPEFLANIVSNDSEN 157
>sp|Q9C8D1|PUB20_ARATH U-box domain-containing protein 20 OS=Arabidopsis thaliana GN=PUB20
PE=2 SV=1
Length = 431
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 62/139 (44%), Gaps = 15/139 (10%)
Query: 234 FYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVAL 293
F CP++ E+M DPV I SG+TY+R I WFE SG CP T L S N +
Sbjct: 37 FQCPISYELMKDPVIIASGITYDRENIEKWFE----SGYQTCPVTNTVLTSLEQIPNHTI 92
Query: 294 KTTIEEWKDR---NDAERIKVSRAALSLAGSDRMVLEAIKDLQTVCQRKQYNKVQVRNVG 350
+ I+ W ERI R + + V E + L +R Y +
Sbjct: 93 RRMIQGWCGSSLGGGIERIPTPRVPV----TSHQVSEICERLSAATRRGDYAAC----ME 144
Query: 351 VLPLLTKLLEYKDRNVRCA 369
++ +T+L + +RN +C
Sbjct: 145 MVTKMTRLGKESERNRKCV 163
>sp|Q9LZW3|PUB16_ARATH U-box domain-containing protein 16 OS=Arabidopsis thaliana GN=PUB16
PE=2 SV=1
Length = 674
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 234 FYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVAL 293
F CP+T E+M DPV + +G TY+R +I W + SG CP TG+ L L N AL
Sbjct: 278 FRCPITLELMRDPVVVATGQTYDRESIDLWIQ----SGHNTCPKTGQVLKHTSLVPNRAL 333
Query: 294 KTTIEEW 300
K I W
Sbjct: 334 KNLIVLW 340
>sp|Q9SF15|PUB24_ARATH E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis thaliana GN=PUB24
PE=1 SV=1
Length = 456
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 234 FYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKL-MSRGLNTNVA 292
F CP++ EIM DPVT SG+TY+R I W EK + CP T + L + L N
Sbjct: 14 FICPISLEIMKDPVTTVSGITYDRQNIVKWLEKVPS-----CPVTKQPLPLDSDLTPNHM 68
Query: 293 LKTTIEEWKDRNDAERIKVSRAALSLAGSDRMVLEAIKDLQTVCQ 337
L+ I+ W N+ + V + + V+E IK+L+ Q
Sbjct: 69 LRRLIQHWCVENETRGV-VRISTPRVPPGKLNVVEEIKNLKKFGQ 112
>sp|Q9LU47|PUB53_ARATH Putative U-box domain-containing protein 53 OS=Arabidopsis thaliana
GN=PUB53 PE=3 SV=1
Length = 819
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 234 FYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVAL 293
F+CPL K++M +P G TY+R AI W E TS P T L + L N L
Sbjct: 753 FFCPLLKDVMKEPCIAADGYTYDRRAIEEWMENHRTS-----PVTNSPLQNVNLLPNHTL 807
Query: 294 KTTIEEWKDRN 304
I EW++RN
Sbjct: 808 YAAIVEWRNRN 818
>sp|O48700|PUB6_ARATH U-box domain-containing protein 6 OS=Arabidopsis thaliana GN=PUB6
PE=2 SV=2
Length = 771
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 232 ETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNV 291
E CP++ ++M DPV I SG TYER I WF + G CP T ++L L N
Sbjct: 277 EELRCPISLQLMYDPVIIASGQTYERVCIEKWF----SDGHNSCPKTQQQLPHLSLTPNY 332
Query: 292 ALKTTIEEWKDRN 304
+K I W ++N
Sbjct: 333 CVKGLIASWCEQN 345
>sp|Q8GUH1|PUB33_ARATH U-box domain-containing protein 33 OS=Arabidopsis thaliana GN=PUB33
PE=2 SV=2
Length = 834
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 215 SRSISLPKVAQYIEPLYETFYCPLTKEIMDDPVTIESGVTYERNAITAWFE-KFETSGDI 273
S S L + I P Y F CP+ +E+M DP G TYE AI AW + + +TS
Sbjct: 750 SSSFHLGRNEHRIAPPY--FICPIFQEVMQDPHVAADGFTYEAEAIRAWLDSEHDTS--- 804
Query: 274 FCPTTGKKLMSRGLNTNVALKTTIEEW 300
P T KL L N AL++ I+EW
Sbjct: 805 --PMTNVKLSHTSLIANHALRSAIQEW 829
>sp|O22193|PUB4_ARATH U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4
PE=1 SV=3
Length = 826
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 80/158 (50%), Gaps = 9/158 (5%)
Query: 434 GGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEI 493
G I++L+ + S D E A L NL N +N K +A+ G +EPL+H L GS E
Sbjct: 583 GAIVLLVELLY--STDSATQENAVTALLNLSINDNNKKAIADAGAIEPLIHVLENGSSEA 640
Query: 494 QMEMASYLGEIVLGHDSKINVPGRAA-STLIRMVHSGNSLTRRIAFKALMQISSHHPSCK 552
+ A+ L + + ++KI + A L+ ++ +G ++ A AL +S H +
Sbjct: 641 KENSAATLFSLSVIEENKIKIGQSGAIGPLVDLLGNGTPRGKKDAATALFNLSIHQENKA 700
Query: 553 ILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANI 590
++V++G V+ + + M + ++A A+LAN+
Sbjct: 701 MIVQSGAVRYLIDLM------DPAAGMVDKAVAVLANL 732
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 234 FYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVAL 293
F+CPL+ E+M DPV + SG TYE+ I W + G CP T + L L N +
Sbjct: 234 FFCPLSLEVMTDPVIVSSGQTYEKAFIKRWIDL----GLKVCPKTRQTLTHTTLIPNYTV 289
Query: 294 KTTIEEWKDRND 305
K I W + ND
Sbjct: 290 KALIANWCETND 301
>sp|Q9SW11|PUB35_ARATH U-box domain-containing protein 35 OS=Arabidopsis thaliana GN=PUB35
PE=1 SV=2
Length = 835
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 234 FYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVAL 293
F CPL K++M++P G TY+R+AI W ++ TS P T L S+ L N L
Sbjct: 770 FICPLLKDVMNEPCVAADGYTYDRHAIEEWLKEHNTS-----PMTDSPLHSKNLLPNYTL 824
Query: 294 KTTIEEWK 301
T I EW+
Sbjct: 825 YTAIMEWR 832
>sp|Q9CAG5|PUB7_ARATH U-box domain-containing protein 7 OS=Arabidopsis thaliana GN=PUB7
PE=2 SV=1
Length = 782
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 232 ETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNV 291
E CP++ ++M DPV I SG TYER I WF + G CP T ++L L N
Sbjct: 274 EELRCPISLQLMCDPVIIASGQTYERVCIEKWF----SDGHNTCPKTQQQLPHISLTPNN 329
Query: 292 ALKTTIEEWKDRNDAE 307
+K I W ++N +
Sbjct: 330 CVKGLIASWCEQNGTQ 345
>sp|Q9LXE3|PUB28_ARATH U-box domain-containing protein 28 OS=Arabidopsis thaliana GN=PUB28
PE=1 SV=1
Length = 409
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
Query: 226 YIEPLYETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSR 285
YI + F CP++ ++M PV++ +GVTY+R +I W + G+ CP T + L ++
Sbjct: 7 YITTVPCFFKCPISLDVMKSPVSLSTGVTYDRVSIQRWLD----DGNNTCPATMQILQNK 62
Query: 286 GLNTNVALKTTIEEWKD----RNDAE 307
N+ L I+ W D R D+E
Sbjct: 63 EFVPNLTLHRLIDHWSDSINRRADSE 88
>sp|Q9FKG5|PUB51_ARATH U-box domain-containing protein 51 OS=Arabidopsis thaliana GN=PUB51
PE=2 SV=2
Length = 796
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 234 FYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVAL 293
FYCP+TK++M++P G TYE+ AI W +K S P T S L N +L
Sbjct: 729 FYCPITKDVMENPCVASDGYTYEKRAIKEWLQKNHKS-----PMTDLPFPSDSLLPNHSL 783
Query: 294 KTTIEEWK 301
+ I+EW+
Sbjct: 784 LSAIKEWR 791
>sp|Q5PNY6|PUB21_ARATH U-box domain-containing protein 21 OS=Arabidopsis thaliana GN=PUB21
PE=2 SV=1
Length = 435
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 15/138 (10%)
Query: 234 FYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVAL 293
F CP++ ++M DPV I +G+TY+R +I W SG+ CP T L + N +
Sbjct: 35 FQCPISIDLMKDPVIISTGITYDRVSIETWI----NSGNKTCPVTNTVLTTFDQIPNHTI 90
Query: 294 KTTIEEW---KDRNDAERIKVSRAALSLAGSDRMVLEAIKDLQTVCQRKQYNKVQVRNVG 350
+ I+ W K +RI R L V E + L + +R Y K V
Sbjct: 91 RKMIQGWCVEKGSPLIQRIPTPRVPLMPCE----VYEISRKLSSATRRGDYEKCGV---- 142
Query: 351 VLPLLTKLLEYKDRNVRC 368
++ + KL + ++N +C
Sbjct: 143 IIEKIKKLGDESEKNRKC 160
>sp|Q8GWV5|PUB3_ARATH U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3
PE=2 SV=2
Length = 760
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 229 PLYETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLN 288
P Y F CPL+ E+M DPV + SG T++R +I W + +G CP T + L + L
Sbjct: 239 PPY--FRCPLSTELMLDPVIVASGQTFDRTSIKKWLD----NGLAVCPRTRQVLTHQELI 292
Query: 289 TNVALKTTIEEWKDRN 304
N +K I W + N
Sbjct: 293 PNYTVKAMIASWLEAN 308
Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 70/151 (46%), Gaps = 8/151 (5%)
Query: 446 WSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLG--E 503
+S + E A L NL + N + E G +EPL+H LN G++ + A+ L
Sbjct: 524 YSEEKLTQEHAVTALLNLSISELNKAMIVEVGAIEPLVHVLNTGNDRAKENSAASLFSLS 583
Query: 504 IVLGHDSKINVPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIVQVM 563
++ + +I A L+ ++ G ++ A AL +S H + +A IVQ
Sbjct: 584 VLQVNRERIGQSNAAIQALVNLLGKGTFRGKKDAASALFNLSITHDN-----KARIVQAK 638
Query: 564 AEEMFIRIIHNEPMNSKEEAAAILANILESG 594
A + + ++ + + ++A A+LAN+ G
Sbjct: 639 AVKYLVELL-DPDLEMVDKAVALLANLSAVG 668
>sp|P0C6E7|PUB55_ARATH Putative U-box domain-containing protein 55 OS=Arabidopsis thaliana
GN=PUB55 PE=3 SV=1
Length = 568
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 6/100 (6%)
Query: 205 LSSQSSDHSTSRSISLPKVAQYIEPLYETFYCPLTKEIMDDPVTIESGVTYERNAITAWF 264
L S + H T S P Y F CP+++E+M +P G TYE ++ W
Sbjct: 474 LQSYTRRHGTPSGFSDEDSVTRQPPSY--FICPISQEVMREPRVAADGFTYEAESLREWL 531
Query: 265 EKFETSGDIFCPTTGKKLMSRGLNTNVALKTTIEEWKDRN 304
+ +G P T KL L N AL++ I+EW RN
Sbjct: 532 D----NGHETSPMTNLKLAHNNLVPNHALRSAIQEWLQRN 567
>sp|Q683D5|PUB37_ARATH U-box domain-containing protein 37 OS=Arabidopsis thaliana GN=PUB37
PE=2 SV=1
Length = 400
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 229 PLYETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLN 288
P Y F CP++ E+M DP G TYE AI+ W + G P T KL L
Sbjct: 326 PQY--FICPISLEVMKDPQLAADGFTYEAEAISTWLQ----GGHETSPMTNTKLHHTKLV 379
Query: 289 TNVALKTTIEEW 300
N+AL++ I+EW
Sbjct: 380 PNLALRSAIQEW 391
>sp|Q9FHN9|PUB31_ARATH U-box domain-containing protein 31 OS=Arabidopsis thaliana GN=PUB31
PE=2 SV=1
Length = 444
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 84/186 (45%), Gaps = 23/186 (12%)
Query: 233 TFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVA 292
F CP++ E M DPVT+ +G TYER+ I WF G CPTT ++L + N
Sbjct: 63 VFICPISLEPMQDPVTLCTGQTYERSNILKWF----NIGHCTCPTTMQELWDDLVTPNKT 118
Query: 293 LKTTIEEW--------KDRNDAERIKVSRAALSLAGSDRMV-----LEAIKDLQTVCQRK 339
L I W K R++ V A+ + G+ R + A+ +L+ V
Sbjct: 119 LHQLIYTWFSQKYVLMKKRSE----DVQGRAIEILGTLRKAKGKAKVHALSELKQVVMAH 174
Query: 340 QYNKVQVRNVGVLPLLTKLLE-YKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILI 398
K V + G + +++ LL + V A+ +L L ++ D K + + +S+++
Sbjct: 175 AIAKKTVVDEGGVFVISSLLSPFTSHAVGSEAIAILVNLELDSDS-KAGLMQPARVSLMV 233
Query: 399 KLLSSS 404
+L+
Sbjct: 234 DMLNDG 239
>sp|Q9SVC6|PUB22_ARATH E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana GN=PUB22
PE=1 SV=1
Length = 435
Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 234 FYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVAL 293
F CP++ +IM DPV + +G+TY+R +I W + + CP T + + L N L
Sbjct: 11 FLCPISLDIMKDPVIVSTGITYDRESIEKWLFSGKKNS---CPVTKQVITETDLTPNHTL 67
Query: 294 KTTIEEWKDRNDA---ERIKVSRAALSLAGSDRMVLEA 328
+ I+ W N + ERI + + + ++++ E+
Sbjct: 68 RRLIQSWCTLNASYGIERIPTPKPPICKSEIEKLIKES 105
>sp|Q058P4|PUB30_ARATH U-box domain-containing protein 30 OS=Arabidopsis thaliana GN=PUB30
PE=2 SV=1
Length = 448
Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 74/181 (40%), Gaps = 39/181 (21%)
Query: 227 IEPLYETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRG 286
++ + F CP++ E M DPVT+ +G TYER I WF G + CPTT ++L
Sbjct: 61 LQDIPSVFICPISLEPMQDPVTLCTGQTYERLNIHKWF----NLGHLTCPTTMQELWDDT 116
Query: 287 LNTNVALKTTIEEWKDRNDAERIKVSRAALSLAGSDRMVLEAIKDLQTVCQRKQYNKVQV 346
+ N L I W + + V +K+ VQ
Sbjct: 117 VTPNKTLHHLIYTWFSQ-----------------------------KYVLMKKRSEDVQG 147
Query: 347 RNVGVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLS--SS 404
R + +L L K R A+ L+Q+V+ ++ + E +S++ LL +S
Sbjct: 148 RAIEILGTLKK----AKGQARVHALSELKQIVIAHLMARKTVVEEGGVSVISSLLGPFTS 203
Query: 405 H 405
H
Sbjct: 204 H 204
>sp|Q9FLF4|PUB27_ARATH U-box domain-containing protein 27 OS=Arabidopsis thaliana GN=PUB27
PE=2 SV=1
Length = 420
Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 234 FYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVAL 293
F CP++ ++M PV++ +GVTY+R +I W + G+ CP T + L ++ N L
Sbjct: 14 FRCPISLDVMKSPVSLCTGVTYDRASIQRWLD----GGNNTCPATMQILQNKDFIPNRTL 69
Query: 294 KTTIEEWKD 302
+ IE W D
Sbjct: 70 QRLIEIWSD 78
>sp|A0AUS0|WSDU1_DANRE WD repeat, SAM and U-box domain-containing protein 1 OS=Danio rerio
GN=wdsub1 PE=2 SV=1
Length = 487
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 43/89 (48%), Gaps = 15/89 (16%)
Query: 222 KVAQYIE-----PLY----ETFYCPLTKEIMDDPVTIESGVTYERNAITAWFE-KFETSG 271
KV + IE P+Y + F CP+T+EIM DPV G +YER AI AW K TS
Sbjct: 400 KVMKKIEELKMVPVYNGTPDEFLCPITREIMKDPVIAADGYSYEREAIEAWISTKNRTS- 458
Query: 272 DIFCPTTGKKLMSRGLNTNVALKTTIEEW 300
P T L + L N LK I W
Sbjct: 459 ----PMTNLPLQTTLLTPNRTLKMAIFRW 483
>sp|Q9LSA6|PUB29_ARATH U-box domain-containing protein 29 OS=Arabidopsis thaliana GN=PUB29
PE=1 SV=1
Length = 415
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 234 FYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVAL 293
F CP++ ++M PV++ +GVTY+R +I W + G+ CP T + L ++ N+ L
Sbjct: 16 FKCPISLDVMRSPVSLCTGVTYDRASIQRWLD----GGNNTCPATMQLLKTKDFVPNLTL 71
Query: 294 KTTIEEWKD 302
+ I W D
Sbjct: 72 QRLINIWSD 80
>sp|Q9FKG6|PUB52_ARATH U-box domain-containing protein 52 OS=Arabidopsis thaliana GN=PUB52
PE=2 SV=1
Length = 845
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 234 FYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVAL 293
F CPL K +M++P G TY+R AI W + +TS P T L ++ L N L
Sbjct: 779 FICPLLKGVMNEPCVAADGYTYDREAIEEWLRQKDTS-----PVTNLPLPNKNLIANYTL 833
Query: 294 KTTIEEWK 301
+ I EWK
Sbjct: 834 YSAIMEWK 841
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.131 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 329,818,316
Number of Sequences: 539616
Number of extensions: 12752660
Number of successful extensions: 38999
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 91
Number of HSP's that attempted gapping in prelim test: 38628
Number of HSP's gapped (non-prelim): 323
length of query: 1019
length of database: 191,569,459
effective HSP length: 128
effective length of query: 891
effective length of database: 122,498,611
effective search space: 109146262401
effective search space used: 109146262401
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)