Query 001733
Match_columns 1019
No_of_seqs 583 out of 3344
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 08:01:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001733.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001733hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 2.9E-55 6.3E-60 555.0 60.6 634 320-1017 27-820 (2102)
2 PLN03200 cellulose synthase-in 100.0 1.6E-48 3.5E-53 493.9 53.7 610 351-1011 14-726 (2102)
3 KOG0166 Karyopherin (importin) 100.0 1.7E-38 3.8E-43 356.0 36.3 410 436-966 68-488 (514)
4 COG5064 SRP1 Karyopherin (impo 100.0 1.4E-37 2.9E-42 321.1 31.5 412 435-965 72-497 (526)
5 KOG4224 Armadillo repeat prote 100.0 1E-32 2.2E-37 287.5 21.2 475 391-965 46-523 (550)
6 KOG4224 Armadillo repeat prote 100.0 3.6E-31 7.8E-36 275.9 27.0 366 350-741 85-453 (550)
7 KOG0166 Karyopherin (importin) 100.0 9.3E-27 2E-31 261.8 33.2 410 519-1009 68-487 (514)
8 COG5064 SRP1 Karyopherin (impo 100.0 1.7E-26 3.8E-31 239.1 25.9 410 518-1007 72-495 (526)
9 PF05804 KAP: Kinesin-associat 99.9 1.1E-23 2.5E-28 250.2 40.6 507 323-923 137-654 (708)
10 PF05804 KAP: Kinesin-associat 99.9 2.9E-21 6.3E-26 229.7 37.5 393 363-798 262-659 (708)
11 KOG1048 Neural adherens juncti 99.9 9.5E-21 2.1E-25 219.4 27.3 378 392-785 233-683 (717)
12 PF04564 U-box: U-box domain; 99.8 1.5E-20 3.4E-25 160.7 5.2 72 230-305 1-72 (73)
13 KOG1048 Neural adherens juncti 99.7 5.1E-17 1.1E-21 188.7 20.6 406 319-748 244-697 (717)
14 KOG2122 Beta-catenin-binding p 99.6 1.8E-14 3.9E-19 172.5 22.9 340 340-690 225-603 (2195)
15 KOG2122 Beta-catenin-binding p 99.6 3.2E-14 7E-19 170.3 24.6 357 453-833 211-603 (2195)
16 KOG4199 Uncharacterized conser 99.6 1.6E-13 3.5E-18 143.6 26.1 306 320-643 119-444 (461)
17 PF10508 Proteasom_PSMB: Prote 99.6 8.7E-13 1.9E-17 156.4 34.6 400 353-782 41-461 (503)
18 smart00504 Ubox Modified RING 99.6 9.9E-16 2.1E-20 128.1 5.6 63 233-300 1-63 (63)
19 KOG4199 Uncharacterized conser 99.6 8.2E-13 1.8E-17 138.3 26.7 342 325-687 79-443 (461)
20 KOG4500 Rho/Rac GTPase guanine 99.5 7.1E-12 1.5E-16 135.2 27.9 390 347-757 84-500 (604)
21 KOG1222 Kinesin associated pro 99.5 6.6E-12 1.4E-16 136.6 26.2 388 451-924 278-669 (791)
22 KOG1222 Kinesin associated pro 99.5 1.4E-11 2.9E-16 134.2 27.7 391 364-838 277-670 (791)
23 KOG4500 Rho/Rac GTPase guanine 99.5 1.2E-11 2.5E-16 133.5 25.3 396 319-731 98-516 (604)
24 PF04826 Arm_2: Armadillo-like 99.5 2.5E-12 5.5E-17 137.2 19.9 196 389-594 9-207 (254)
25 PF10508 Proteasom_PSMB: Prote 99.4 2.1E-10 4.6E-15 136.2 35.2 396 322-734 52-465 (503)
26 PF04826 Arm_2: Armadillo-like 99.4 1.1E-11 2.3E-16 132.4 17.7 196 347-548 9-207 (254)
27 PRK09687 putative lyase; Provi 99.4 8.5E-11 1.8E-15 128.4 24.2 254 351-684 24-278 (280)
28 PF01602 Adaptin_N: Adaptin N 99.4 2E-09 4.3E-14 130.4 37.2 501 321-961 19-521 (526)
29 KOG1293 Proteins containing ar 99.3 7.1E-10 1.5E-14 126.5 28.3 489 447-1007 20-532 (678)
30 KOG2171 Karyopherin (importin) 99.3 1.6E-08 3.4E-13 122.7 40.6 491 321-962 17-544 (1075)
31 PRK13800 putative oxidoreducta 99.3 4.6E-10 1E-14 142.6 28.4 276 349-730 620-895 (897)
32 PRK09687 putative lyase; Provi 99.3 1.1E-09 2.3E-14 119.8 24.2 255 392-730 23-278 (280)
33 PRK13800 putative oxidoreducta 99.2 1.7E-09 3.7E-14 137.5 29.3 277 475-914 619-895 (897)
34 KOG1293 Proteins containing ar 99.2 1.6E-09 3.4E-14 123.8 25.2 482 319-834 20-536 (678)
35 PF01602 Adaptin_N: Adaptin N 99.2 3.5E-09 7.5E-14 128.2 29.4 471 397-1007 9-482 (526)
36 KOG2171 Karyopherin (importin) 99.2 3.7E-08 8E-13 119.5 35.9 464 319-830 48-545 (1075)
37 KOG0946 ER-Golgi vesicle-tethe 99.0 1.5E-06 3.1E-11 101.2 37.3 480 292-828 19-555 (970)
38 PF15227 zf-C3HC4_4: zinc fing 99.0 2E-10 4.4E-15 86.3 3.0 42 236-278 1-42 (42)
39 cd00020 ARM Armadillo/beta-cat 99.0 5.5E-09 1.2E-13 99.2 13.4 117 346-464 3-119 (120)
40 PTZ00429 beta-adaptin; Provisi 99.0 2.6E-06 5.6E-11 104.3 37.9 367 391-832 31-398 (746)
41 cd00020 ARM Armadillo/beta-cat 98.9 1.1E-08 2.3E-13 97.2 13.0 117 387-506 2-120 (120)
42 PTZ00429 beta-adaptin; Provisi 98.9 7.6E-05 1.6E-09 91.6 49.2 418 330-831 10-433 (746)
43 TIGR00599 rad18 DNA repair pro 98.9 2E-09 4.3E-14 120.3 6.3 71 228-303 21-91 (397)
44 cd00256 VATPase_H VATPase_H, r 98.9 9.6E-07 2.1E-11 100.5 27.5 323 350-686 53-423 (429)
45 KOG2023 Nuclear transport rece 98.9 6.6E-07 1.4E-11 102.1 25.1 353 350-733 128-548 (885)
46 PLN03208 E3 ubiquitin-protein 98.8 2.6E-09 5.7E-14 106.2 3.9 62 230-291 15-87 (193)
47 KOG0168 Putative ubiquitin fus 98.8 1.5E-06 3.3E-11 101.7 26.4 198 477-691 211-416 (1051)
48 KOG0168 Putative ubiquitin fus 98.7 2.5E-06 5.4E-11 100.0 25.0 388 317-713 177-653 (1051)
49 KOG4642 Chaperone-dependent E3 98.7 1.5E-08 3.3E-13 102.6 4.1 72 230-305 208-279 (284)
50 PF03224 V-ATPase_H_N: V-ATPas 98.7 4.9E-07 1.1E-11 101.3 16.5 228 351-582 56-304 (312)
51 KOG0946 ER-Golgi vesicle-tethe 98.7 5.9E-06 1.3E-10 96.4 25.1 334 392-741 22-406 (970)
52 PF03224 V-ATPase_H_N: V-ATPas 98.6 1E-06 2.3E-11 98.7 16.2 214 320-535 69-303 (312)
53 PF11789 zf-Nse: Zinc-finger o 98.6 2.4E-08 5.1E-13 80.2 1.7 45 232-279 10-55 (57)
54 cd00256 VATPase_H VATPase_H, r 98.6 9.8E-06 2.1E-10 92.4 23.3 309 319-641 65-423 (429)
55 KOG2160 Armadillo/beta-catenin 98.5 5.9E-06 1.3E-10 89.8 18.8 188 318-506 93-282 (342)
56 PF05536 Neurochondrin: Neuroc 98.5 0.00026 5.6E-09 84.7 34.2 423 352-811 7-461 (543)
57 TIGR02270 conserved hypothetic 98.5 4.2E-05 9.1E-10 87.8 25.2 242 349-687 53-295 (410)
58 PF13923 zf-C3HC4_2: Zinc fing 98.4 1.3E-07 2.8E-12 70.3 2.9 38 236-278 1-39 (39)
59 KOG1789 Endocytosis protein RM 98.4 0.0011 2.4E-08 79.5 36.1 352 369-734 1403-1883(2235)
60 KOG2023 Nuclear transport rece 98.4 2.2E-05 4.8E-10 90.1 21.2 423 392-920 10-507 (885)
61 PF13445 zf-RING_UBOX: RING-ty 98.4 1.4E-07 3.1E-12 70.8 2.5 39 236-276 1-43 (43)
62 KOG4413 26S proteasome regulat 98.4 0.00012 2.6E-09 77.6 23.6 311 327-647 101-443 (524)
63 KOG2160 Armadillo/beta-catenin 98.3 1.5E-05 3.4E-10 86.6 17.0 187 360-549 93-285 (342)
64 KOG2759 Vacuolar H+-ATPase V1 98.3 0.00018 3.8E-09 79.5 24.3 326 351-687 66-437 (442)
65 PF00097 zf-C3HC4: Zinc finger 98.3 5.5E-07 1.2E-11 67.9 3.4 40 236-278 1-41 (41)
66 KOG0287 Postreplication repair 98.3 2.9E-07 6.3E-12 96.6 2.5 69 230-303 20-88 (442)
67 KOG1824 TATA-binding protein-i 98.3 0.0039 8.5E-08 74.9 36.4 513 319-921 489-1039(1233)
68 KOG1062 Vesicle coat complex A 98.3 0.0011 2.3E-08 78.6 31.5 205 355-597 112-328 (866)
69 KOG3678 SARM protein (with ste 98.3 2.8E-05 6.2E-10 85.5 17.0 269 386-689 174-453 (832)
70 PF14835 zf-RING_6: zf-RING of 98.2 2.9E-07 6.2E-12 73.7 0.8 59 232-297 6-65 (65)
71 KOG1241 Karyopherin (importin) 98.2 0.0017 3.6E-08 76.5 31.0 430 352-833 4-479 (859)
72 KOG2973 Uncharacterized conser 98.2 0.00021 4.6E-09 75.7 21.2 290 354-687 7-314 (353)
73 KOG0213 Splicing factor 3b, su 98.2 0.003 6.5E-08 73.8 31.2 258 518-833 800-1067(1172)
74 PF13920 zf-C3HC4_3: Zinc fing 98.2 1.3E-06 2.8E-11 68.9 3.0 47 232-283 1-48 (50)
75 PHA02929 N1R/p28-like protein; 98.2 1.4E-06 3E-11 91.2 4.1 49 230-283 171-227 (238)
76 PF05536 Neurochondrin: Neuroc 98.2 0.0047 1E-07 74.0 34.5 427 321-793 18-498 (543)
77 KOG2042 Ubiquitin fusion degra 98.1 2.6E-06 5.6E-11 103.2 5.7 73 227-304 864-937 (943)
78 KOG0823 Predicted E3 ubiquitin 98.1 1.9E-06 4.1E-11 87.4 3.1 59 232-292 46-104 (230)
79 KOG1789 Endocytosis protein RM 98.1 0.0024 5.2E-08 76.8 28.1 376 364-758 1739-2141(2235)
80 KOG1241 Karyopherin (importin) 98.0 0.0067 1.4E-07 71.6 31.0 349 355-734 95-477 (859)
81 KOG0213 Splicing factor 3b, su 98.0 0.0027 5.8E-08 74.2 26.7 268 612-1008 798-1065(1172)
82 COG5432 RAD18 RING-finger-cont 98.0 3.5E-06 7.5E-11 86.8 3.1 68 230-302 22-89 (391)
83 PF14664 RICTOR_N: Rapamycin-i 98.0 0.0033 7.3E-08 71.5 27.2 329 331-687 6-363 (371)
84 KOG1062 Vesicle coat complex A 98.0 0.003 6.5E-08 74.9 26.5 277 324-687 123-413 (866)
85 KOG1060 Vesicle coat complex A 97.9 0.0043 9.4E-08 73.3 27.0 431 396-964 39-496 (968)
86 PF13639 zf-RING_2: Ring finge 97.9 5E-06 1.1E-10 63.6 2.2 40 235-279 2-44 (44)
87 KOG2177 Predicted E3 ubiquitin 97.9 6.5E-06 1.4E-10 93.2 3.6 69 229-304 9-77 (386)
88 KOG3678 SARM protein (with ste 97.9 0.0003 6.5E-09 77.7 15.6 271 651-959 172-447 (832)
89 cd00162 RING RING-finger (Real 97.9 1.3E-05 2.9E-10 61.3 3.9 43 235-281 1-44 (45)
90 PF14664 RICTOR_N: Rapamycin-i 97.9 0.0032 7E-08 71.7 24.8 260 374-646 7-272 (371)
91 KOG1059 Vesicle coat complex A 97.9 0.0085 1.8E-07 70.3 27.6 214 437-688 147-365 (877)
92 TIGR02270 conserved hypothetic 97.9 0.0019 4.2E-08 74.3 22.6 212 351-645 87-298 (410)
93 KOG1059 Vesicle coat complex A 97.9 0.014 3E-07 68.5 29.0 254 352-645 146-403 (877)
94 KOG2759 Vacuolar H+-ATPase V1 97.9 0.0035 7.7E-08 69.5 23.2 308 320-643 78-438 (442)
95 PF00514 Arm: Armadillo/beta-c 97.8 2.4E-05 5.2E-10 58.9 4.6 40 790-830 1-40 (41)
96 KOG0317 Predicted E3 ubiquitin 97.8 1.7E-05 3.8E-10 82.9 4.9 53 230-287 236-288 (293)
97 PHA02926 zinc finger-like prot 97.8 1.6E-05 3.4E-10 80.0 4.2 54 230-283 167-230 (242)
98 PF10165 Ric8: Guanine nucleot 97.7 0.0023 5E-08 75.1 21.1 283 329-643 2-337 (446)
99 PF10165 Ric8: Guanine nucleot 97.7 0.00097 2.1E-08 78.2 17.9 276 413-695 2-344 (446)
100 KOG1824 TATA-binding protein-i 97.7 0.036 7.9E-07 67.0 30.4 527 352-965 478-1037(1233)
101 smart00184 RING Ring finger. E 97.7 3.3E-05 7.2E-10 56.9 3.8 39 236-278 1-39 (39)
102 COG5181 HSH155 U2 snRNP splice 97.7 0.0094 2E-07 68.5 24.3 524 346-1009 308-871 (975)
103 KOG2973 Uncharacterized conser 97.7 0.0033 7.1E-08 67.0 19.4 263 320-592 15-315 (353)
104 COG1413 FOG: HEAT repeat [Ener 97.7 0.0088 1.9E-07 68.0 24.9 250 350-688 43-304 (335)
105 KOG0320 Predicted E3 ubiquitin 97.7 2.1E-05 4.5E-10 76.3 2.7 53 232-289 130-184 (187)
106 KOG4413 26S proteasome regulat 97.7 0.0065 1.4E-07 64.8 20.9 343 395-754 85-459 (524)
107 KOG0212 Uncharacterized conser 97.7 0.0033 7.1E-08 71.7 19.7 296 322-643 138-444 (675)
108 KOG1242 Protein containing ada 97.7 0.016 3.6E-07 67.5 25.7 348 435-833 97-446 (569)
109 COG5113 UFD2 Ubiquitin fusion 97.6 5.4E-05 1.2E-09 86.0 5.5 72 227-303 848-920 (929)
110 KOG1242 Protein containing ada 97.6 0.029 6.3E-07 65.5 27.3 344 478-919 97-445 (569)
111 PF00514 Arm: Armadillo/beta-c 97.6 0.00011 2.4E-09 55.2 4.8 40 381-420 1-40 (41)
112 COG1413 FOG: HEAT repeat [Ener 97.6 0.022 4.8E-07 64.7 25.8 279 558-1005 43-332 (335)
113 KOG4646 Uncharacterized conser 97.6 0.00055 1.2E-08 63.8 10.0 122 350-475 16-139 (173)
114 KOG0212 Uncharacterized conser 97.6 0.0074 1.6E-07 68.9 20.7 318 348-689 82-407 (675)
115 KOG0311 Predicted E3 ubiquitin 97.6 1.7E-05 3.8E-10 84.7 0.1 69 229-301 39-109 (381)
116 TIGR00570 cdk7 CDK-activating 97.5 8.1E-05 1.8E-09 80.2 4.5 54 232-289 2-60 (309)
117 KOG1061 Vesicle coat complex A 97.5 0.015 3.1E-07 69.4 23.1 337 349-734 85-453 (734)
118 KOG4646 Uncharacterized conser 97.4 0.00087 1.9E-08 62.5 9.3 130 433-563 15-146 (173)
119 COG5215 KAP95 Karyopherin (imp 97.4 0.088 1.9E-06 60.4 26.7 356 523-965 100-480 (858)
120 PF13646 HEAT_2: HEAT repeats; 97.4 0.0007 1.5E-08 60.3 8.2 87 803-960 1-88 (88)
121 KOG1060 Vesicle coat complex A 97.3 0.023 5E-07 67.4 21.8 301 352-692 110-462 (968)
122 COG5215 KAP95 Karyopherin (imp 97.3 0.21 4.5E-06 57.6 28.4 455 319-812 189-691 (858)
123 KOG2734 Uncharacterized conser 97.3 0.047 1E-06 60.9 22.8 242 324-568 100-371 (536)
124 PF14634 zf-RING_5: zinc-RING 97.3 0.00017 3.8E-09 55.0 3.0 40 236-280 2-44 (44)
125 PF13646 HEAT_2: HEAT repeats; 97.3 0.00099 2.1E-08 59.3 8.4 87 352-461 1-88 (88)
126 KOG2734 Uncharacterized conser 97.3 0.094 2E-06 58.7 24.5 221 369-597 103-351 (536)
127 KOG1061 Vesicle coat complex A 97.3 0.29 6.3E-06 58.8 30.0 288 392-727 13-301 (734)
128 COG5240 SEC21 Vesicle coat com 97.2 0.3 6.5E-06 56.3 28.4 266 520-830 267-554 (898)
129 KOG0289 mRNA splicing factor [ 97.2 0.00068 1.5E-08 74.5 6.9 50 234-288 1-51 (506)
130 KOG1077 Vesicle coat complex A 97.1 0.24 5.2E-06 58.4 26.3 288 352-687 113-432 (938)
131 KOG0211 Protein phosphatase 2A 97.1 0.33 7.1E-06 59.8 29.1 545 350-1010 121-666 (759)
132 KOG2660 Locus-specific chromos 97.1 0.0003 6.4E-09 75.3 2.8 66 230-300 12-82 (331)
133 COG5369 Uncharacterized conser 97.1 0.0056 1.2E-07 69.4 12.7 206 321-568 402-618 (743)
134 KOG0211 Protein phosphatase 2A 97.1 0.25 5.5E-06 60.8 27.8 498 353-965 162-665 (759)
135 KOG0978 E3 ubiquitin ligase in 97.1 0.00024 5.2E-09 84.3 2.1 57 229-289 639-695 (698)
136 PF12678 zf-rbx1: RING-H2 zinc 97.0 0.00072 1.6E-08 57.8 3.9 44 230-279 17-73 (73)
137 KOG0297 TNF receptor-associate 96.9 0.0007 1.5E-08 77.7 3.8 67 229-300 17-85 (391)
138 COG5574 PEX10 RING-finger-cont 96.9 0.00058 1.3E-08 70.8 2.6 49 231-283 213-262 (271)
139 KOG2164 Predicted E3 ubiquitin 96.9 0.00071 1.5E-08 76.5 3.4 58 233-290 186-243 (513)
140 KOG1943 Beta-tubulin folding c 96.8 0.98 2.1E-05 56.2 29.4 348 349-734 340-705 (1133)
141 KOG1058 Vesicle coat complex C 96.8 0.14 3E-06 60.8 21.3 370 357-807 106-486 (948)
142 PF12348 CLASP_N: CLASP N term 96.8 0.017 3.8E-07 61.6 13.6 183 360-549 17-209 (228)
143 KOG1517 Guanine nucleotide bin 96.8 0.027 5.9E-07 68.7 15.5 187 676-920 487-673 (1387)
144 COG5240 SEC21 Vesicle coat com 96.7 0.095 2.1E-06 60.2 18.8 307 328-688 247-555 (898)
145 KOG0567 HEAT repeat-containing 96.7 0.13 2.9E-06 54.0 18.5 257 352-688 5-280 (289)
146 KOG1078 Vesicle coat complex C 96.7 2.2 4.8E-05 51.5 30.1 273 322-645 37-313 (865)
147 COG5181 HSH155 U2 snRNP splice 96.7 0.13 2.9E-06 59.5 19.5 254 435-735 605-871 (975)
148 smart00185 ARM Armadillo/beta- 96.7 0.0034 7.4E-08 46.8 4.9 40 467-506 2-41 (41)
149 smart00185 ARM Armadillo/beta- 96.7 0.0034 7.3E-08 46.8 4.9 38 792-830 3-40 (41)
150 KOG1077 Vesicle coat complex A 96.5 3 6.5E-05 49.7 29.3 288 319-643 122-433 (938)
151 KOG2259 Uncharacterized conser 96.5 0.031 6.8E-07 65.1 13.0 294 408-738 174-479 (823)
152 KOG2259 Uncharacterized conser 96.4 0.32 6.9E-06 57.2 20.4 250 394-687 200-474 (823)
153 PF12348 CLASP_N: CLASP N term 96.4 0.037 8.1E-07 59.0 12.7 178 320-506 19-206 (228)
154 COG5222 Uncharacterized conser 96.4 0.0043 9.4E-08 64.6 4.9 66 234-303 275-342 (427)
155 PF12861 zf-Apc11: Anaphase-pr 96.3 0.0035 7.6E-08 54.1 3.1 48 234-283 33-82 (85)
156 KOG4159 Predicted E3 ubiquitin 96.3 0.003 6.4E-08 71.5 3.5 69 230-303 81-154 (398)
157 KOG1517 Guanine nucleotide bin 96.2 0.14 3E-06 62.9 16.7 222 327-550 486-736 (1387)
158 KOG0824 Predicted E3 ubiquitin 95.9 0.0042 9.1E-08 65.6 2.0 49 233-285 7-55 (324)
159 COG5152 Uncharacterized conser 95.8 0.0042 9.1E-08 61.0 1.6 52 224-282 189-240 (259)
160 PF09759 Atx10homo_assoc: Spin 95.7 0.036 7.7E-07 50.4 7.2 64 327-390 5-70 (102)
161 KOG1002 Nucleotide excision re 95.7 0.0056 1.2E-07 68.7 2.4 54 232-285 535-588 (791)
162 KOG4628 Predicted E3 ubiquitin 95.7 0.0073 1.6E-07 66.5 3.0 46 234-283 230-278 (348)
163 KOG0802 E3 ubiquitin ligase [P 95.6 0.0059 1.3E-07 73.6 2.1 46 231-281 289-339 (543)
164 KOG1943 Beta-tubulin folding c 95.6 7.6 0.00017 48.8 28.0 424 351-833 421-883 (1133)
165 KOG4535 HEAT and armadillo rep 95.5 0.33 7.1E-06 54.9 14.8 461 482-1014 111-609 (728)
166 PF04641 Rtf2: Rtf2 RING-finge 95.4 0.012 2.6E-07 63.9 3.7 54 230-289 110-167 (260)
167 PF05659 RPW8: Arabidopsis bro 95.4 0.16 3.5E-06 49.7 11.0 87 32-119 32-120 (147)
168 COG5231 VMA13 Vacuolar H+-ATPa 95.3 0.4 8.6E-06 51.7 14.2 229 357-592 156-428 (432)
169 KOG1240 Protein kinase contain 95.3 1.1 2.5E-05 56.2 19.9 286 615-965 424-726 (1431)
170 PF12460 MMS19_C: RNAPII trans 95.2 8.4 0.00018 45.1 28.9 354 352-738 1-398 (415)
171 KOG3039 Uncharacterized conser 95.2 0.014 3E-07 59.7 2.9 53 232-289 220-276 (303)
172 KOG2879 Predicted E3 ubiquitin 95.2 0.015 3.2E-07 60.8 3.1 49 232-283 238-287 (298)
173 COG5369 Uncharacterized conser 95.1 0.15 3.1E-06 58.4 10.8 178 412-597 409-599 (743)
174 COG5243 HRD1 HRD ubiquitin lig 94.9 0.02 4.2E-07 61.9 3.3 46 232-282 286-344 (491)
175 KOG0567 HEAT repeat-containing 94.9 2.6 5.6E-05 44.8 18.4 204 479-734 38-249 (289)
176 KOG1813 Predicted E3 ubiquitin 94.8 0.012 2.5E-07 62.2 1.3 44 234-282 242-285 (313)
177 PF13513 HEAT_EZ: HEAT-like re 94.7 0.043 9.4E-07 44.0 4.1 55 450-504 1-55 (55)
178 KOG0804 Cytoplasmic Zn-finger 94.6 0.013 2.9E-07 65.1 1.1 48 229-283 171-222 (493)
179 PF11698 V-ATPase_H_C: V-ATPas 94.4 0.096 2.1E-06 48.9 6.2 74 888-965 42-116 (119)
180 PF13513 HEAT_EZ: HEAT-like re 94.4 0.1 2.2E-06 41.8 5.7 55 364-419 1-55 (55)
181 PF12717 Cnd1: non-SMC mitotic 94.4 0.99 2.2E-05 46.1 14.2 92 363-466 1-93 (178)
182 KOG3036 Protein involved in ce 94.3 1.6 3.5E-05 45.6 15.2 187 630-831 95-291 (293)
183 KOG4367 Predicted Zn-finger pr 94.3 0.018 3.8E-07 63.2 1.3 33 232-264 3-35 (699)
184 COG5096 Vesicle coat complex, 94.3 1.7 3.7E-05 53.4 17.9 136 353-504 58-193 (757)
185 PF08569 Mo25: Mo25-like; Int 94.3 2.6 5.7E-05 47.4 18.3 216 472-700 71-297 (335)
186 PF12460 MMS19_C: RNAPII trans 94.2 14 0.00031 43.2 25.9 365 520-965 2-395 (415)
187 KOG1078 Vesicle coat complex C 94.2 8.4 0.00018 46.8 22.7 285 351-687 246-531 (865)
188 PF11841 DUF3361: Domain of un 94.0 0.71 1.5E-05 45.5 11.6 118 388-506 7-131 (160)
189 KOG0915 Uncharacterized conser 94.0 3.3 7.2E-05 53.6 20.0 204 611-834 954-1163(1702)
190 PF11841 DUF3361: Domain of un 94.0 0.54 1.2E-05 46.4 10.6 116 433-548 10-133 (160)
191 KOG3036 Protein involved in ce 93.9 2.9 6.4E-05 43.8 16.2 150 323-474 94-256 (293)
192 PF04078 Rcd1: Cell differenti 93.9 1.1 2.3E-05 47.8 13.5 224 449-687 8-261 (262)
193 PF13764 E3_UbLigase_R4: E3 ub 93.9 6 0.00013 49.5 21.9 74 432-505 115-199 (802)
194 PF04063 DUF383: Domain of unk 93.9 0.26 5.5E-06 50.7 8.7 116 452-567 11-156 (192)
195 PF05004 IFRD: Interferon-rela 93.9 4.6 9.9E-05 45.2 19.3 192 481-687 47-256 (309)
196 PF08045 CDC14: Cell division 93.7 0.47 1E-05 50.8 10.5 101 321-421 104-207 (257)
197 COG5231 VMA13 Vacuolar H+-ATPa 93.7 2.5 5.4E-05 45.8 15.7 257 401-686 158-426 (432)
198 KOG3113 Uncharacterized conser 93.6 0.049 1.1E-06 56.1 2.7 50 232-288 110-163 (293)
199 PF05004 IFRD: Interferon-rela 93.5 3.2 6.9E-05 46.4 17.3 206 615-832 45-258 (309)
200 KOG4151 Myosin assembly protei 93.5 6.3 0.00014 48.1 20.4 244 547-828 493-738 (748)
201 COG5540 RING-finger-containing 93.5 0.056 1.2E-06 57.1 3.0 47 234-284 324-373 (374)
202 KOG0826 Predicted E3 ubiquitin 93.4 0.056 1.2E-06 58.0 3.0 49 230-283 297-346 (357)
203 PF04078 Rcd1: Cell differenti 93.3 1.7 3.6E-05 46.4 13.7 152 323-475 65-228 (262)
204 KOG1058 Vesicle coat complex C 93.1 3.9 8.5E-05 49.2 17.4 421 331-832 119-567 (948)
205 PF02985 HEAT: HEAT repeat; I 93.0 0.11 2.5E-06 36.1 3.1 29 802-831 1-29 (31)
206 KOG2611 Neurochondrin/leucine- 93.0 7.2 0.00016 44.6 18.5 179 449-645 24-227 (698)
207 PF09759 Atx10homo_assoc: Spin 93.0 0.32 7E-06 44.3 6.7 69 722-800 3-71 (102)
208 PF12755 Vac14_Fab1_bd: Vacuol 92.8 0.4 8.6E-06 43.5 7.1 70 889-964 27-96 (97)
209 PF11698 V-ATPase_H_C: V-ATPas 92.7 0.26 5.5E-06 46.1 5.8 70 351-420 44-114 (119)
210 KOG3039 Uncharacterized conser 92.6 0.082 1.8E-06 54.2 2.7 37 230-266 40-76 (303)
211 KOG1240 Protein kinase contain 92.5 5.1 0.00011 50.8 17.9 262 394-688 424-725 (1431)
212 PRK14707 hypothetical protein; 92.4 57 0.0012 44.5 40.0 255 324-590 180-443 (2710)
213 PF12717 Cnd1: non-SMC mitotic 91.9 5.4 0.00012 40.7 15.1 90 323-422 3-93 (178)
214 COG5096 Vesicle coat complex, 91.7 43 0.00093 41.6 30.3 118 330-465 77-195 (757)
215 KOG2979 Protein involved in DN 91.7 0.15 3.3E-06 53.2 3.4 48 231-281 174-222 (262)
216 PF02985 HEAT: HEAT repeat; I 91.6 0.23 5E-06 34.6 3.3 28 891-918 2-29 (31)
217 KOG2611 Neurochondrin/leucine- 91.6 9 0.0002 43.9 17.1 131 355-487 16-162 (698)
218 PF13764 E3_UbLigase_R4: E3 ub 91.3 47 0.001 41.8 24.8 156 477-646 84-261 (802)
219 KOG2817 Predicted E3 ubiquitin 91.2 0.14 3E-06 56.8 2.7 45 232-280 333-382 (394)
220 PF08569 Mo25: Mo25-like; Int 91.2 11 0.00024 42.4 17.8 200 346-550 72-287 (335)
221 PF12719 Cnd3: Nuclear condens 91.2 17 0.00037 40.4 19.5 171 392-571 26-210 (298)
222 KOG1645 RING-finger-containing 90.5 0.13 2.8E-06 56.9 1.6 60 233-295 4-68 (463)
223 KOG1734 Predicted RING-contain 90.3 0.07 1.5E-06 55.5 -0.5 56 232-290 223-288 (328)
224 KOG2999 Regulator of Rac1, req 90.3 4.1 8.9E-05 47.3 13.2 173 394-567 85-265 (713)
225 KOG1991 Nuclear transport rece 90.2 35 0.00076 42.9 21.6 154 410-567 390-553 (1010)
226 PF07814 WAPL: Wings apart-lik 89.9 12 0.00025 43.0 17.0 93 394-487 23-116 (361)
227 KOG1832 HIV-1 Vpr-binding prot 89.8 7.4 0.00016 47.6 15.1 399 368-803 327-787 (1516)
228 KOG1020 Sister chromatid cohes 89.6 84 0.0018 41.6 34.6 141 350-508 816-962 (1692)
229 PF02891 zf-MIZ: MIZ/SP-RING z 89.3 0.43 9.2E-06 37.5 3.2 46 233-281 2-50 (50)
230 KOG1785 Tyrosine kinase negati 89.0 0.18 3.9E-06 55.1 1.3 49 235-286 371-419 (563)
231 PF04063 DUF383: Domain of unk 88.3 3.4 7.4E-05 42.5 10.0 120 365-487 10-157 (192)
232 PF11701 UNC45-central: Myosin 88.3 2.3 5E-05 42.4 8.6 145 394-544 5-157 (157)
233 PF11701 UNC45-central: Myosin 88.0 3.5 7.5E-05 41.2 9.6 148 352-504 5-157 (157)
234 KOG1991 Nuclear transport rece 87.8 38 0.00083 42.6 19.7 280 517-834 410-714 (1010)
235 PF12755 Vac14_Fab1_bd: Vacuol 87.8 0.74 1.6E-05 41.8 4.3 68 659-732 27-94 (97)
236 smart00744 RINGv The RING-vari 87.7 0.72 1.6E-05 36.0 3.6 41 236-279 2-49 (49)
237 KOG2274 Predicted importin 9 [ 87.7 85 0.0018 39.3 22.8 188 488-693 502-694 (1005)
238 KOG2025 Chromosome condensatio 87.6 37 0.00081 41.1 18.8 118 514-652 82-199 (892)
239 KOG2062 26S proteasome regulat 87.1 49 0.0011 40.3 19.4 133 659-830 519-652 (929)
240 KOG4151 Myosin assembly protei 86.9 11 0.00023 46.2 14.3 198 381-590 493-697 (748)
241 PF06025 DUF913: Domain of Unk 86.8 29 0.00062 40.0 17.5 101 388-488 101-207 (379)
242 KOG1248 Uncharacterized conser 86.8 27 0.00058 44.7 18.0 219 360-594 664-900 (1176)
243 PF08045 CDC14: Cell division 86.5 4.4 9.6E-05 43.5 9.9 98 366-464 107-206 (257)
244 KOG0825 PHD Zn-finger protein 86.5 0.18 4E-06 59.7 -0.5 49 232-285 122-173 (1134)
245 KOG4692 Predicted E3 ubiquitin 86.3 0.43 9.3E-06 51.5 2.2 47 232-283 421-467 (489)
246 KOG2999 Regulator of Rac1, req 85.8 14 0.0003 43.2 13.7 153 352-506 85-242 (713)
247 KOG0414 Chromosome condensatio 85.6 4.9 0.00011 50.9 10.9 140 351-506 920-1064(1251)
248 KOG3800 Predicted E3 ubiquitin 85.4 0.6 1.3E-05 49.7 2.7 46 236-285 3-53 (300)
249 PF12719 Cnd3: Nuclear condens 85.4 10 0.00022 42.2 12.8 111 350-467 26-145 (298)
250 KOG0827 Predicted E3 ubiquitin 85.3 0.54 1.2E-05 51.6 2.4 51 234-286 5-59 (465)
251 KOG3161 Predicted E3 ubiquitin 84.9 0.38 8.3E-06 56.0 1.1 36 231-266 9-48 (861)
252 COG5194 APC11 Component of SCF 84.3 1 2.2E-05 38.1 3.0 44 235-283 33-81 (88)
253 KOG2025 Chromosome condensatio 83.8 81 0.0018 38.4 19.0 115 433-556 84-200 (892)
254 KOG0396 Uncharacterized conser 83.7 0.5 1.1E-05 52.0 1.3 50 233-286 330-382 (389)
255 KOG1039 Predicted E3 ubiquitin 82.6 0.83 1.8E-05 51.0 2.5 52 231-282 159-220 (344)
256 PF07814 WAPL: Wings apart-lik 82.4 64 0.0014 37.0 17.8 205 352-558 23-312 (361)
257 KOG1832 HIV-1 Vpr-binding prot 82.3 64 0.0014 40.1 17.6 128 696-833 595-775 (1516)
258 KOG4535 HEAT and armadillo rep 82.3 2.2 4.7E-05 48.6 5.5 177 366-547 407-604 (728)
259 KOG2274 Predicted importin 9 [ 82.1 1.5E+02 0.0032 37.3 22.9 222 361-593 461-690 (1005)
260 KOG4464 Signaling protein RIC- 82.1 75 0.0016 36.1 16.9 106 405-510 110-235 (532)
261 PF11793 FANCL_C: FANCL C-term 82.0 0.65 1.4E-05 39.3 1.1 51 233-283 2-66 (70)
262 COG5209 RCD1 Uncharacterized p 81.9 18 0.0004 37.4 11.4 147 408-554 116-276 (315)
263 PF08324 PUL: PUL domain; Int 81.9 49 0.0011 36.0 16.2 187 395-585 66-267 (268)
264 KOG1248 Uncharacterized conser 81.6 44 0.00095 42.9 16.7 240 433-692 649-902 (1176)
265 KOG2956 CLIP-associating prote 81.6 46 0.001 38.5 15.4 145 518-688 330-477 (516)
266 KOG2062 26S proteasome regulat 81.4 64 0.0014 39.4 17.1 128 522-687 524-652 (929)
267 COG5109 Uncharacterized conser 81.0 0.89 1.9E-05 48.6 1.9 49 230-280 333-384 (396)
268 PF12031 DUF3518: Domain of un 80.6 4.3 9.3E-05 42.7 6.6 83 407-490 139-229 (257)
269 KOG3665 ZYG-1-like serine/thre 80.1 1.6E+02 0.0035 36.9 21.2 179 540-756 494-676 (699)
270 KOG0883 Cyclophilin type, U bo 79.8 1.4 3E-05 48.5 2.9 51 234-289 41-91 (518)
271 KOG4464 Signaling protein RIC- 79.4 63 0.0014 36.7 15.3 104 362-465 109-231 (532)
272 KOG1788 Uncharacterized conser 79.1 2E+02 0.0042 36.8 25.3 484 434-1014 466-988 (2799)
273 KOG1493 Anaphase-promoting com 79.0 0.86 1.9E-05 38.2 0.8 51 231-283 29-81 (84)
274 KOG1001 Helicase-like transcri 79.0 0.47 1E-05 58.1 -1.1 47 234-284 455-501 (674)
275 PF14447 Prok-RING_4: Prokaryo 78.6 1.3 2.8E-05 35.0 1.6 46 233-285 7-52 (55)
276 KOG0414 Chromosome condensatio 78.4 13 0.00028 47.3 10.8 142 393-548 920-1066(1251)
277 PF05918 API5: Apoptosis inhib 78.3 21 0.00046 42.7 12.2 119 405-542 35-158 (556)
278 KOG4653 Uncharacterized conser 78.2 37 0.0008 42.1 14.1 179 361-548 738-920 (982)
279 KOG0301 Phospholipase A2-activ 77.9 30 0.00065 41.6 13.0 172 319-499 555-739 (745)
280 PF05918 API5: Apoptosis inhib 77.9 16 0.00034 43.8 11.1 125 319-461 33-158 (556)
281 PF06371 Drf_GBD: Diaphanous G 77.8 15 0.00033 37.4 9.9 73 433-505 106-186 (187)
282 KOG0298 DEAD box-containing he 77.7 0.76 1.6E-05 58.2 0.2 82 191-280 1114-1196(1394)
283 PF06371 Drf_GBD: Diaphanous G 77.7 10 0.00022 38.8 8.6 93 327-420 83-186 (187)
284 PF05605 zf-Di19: Drought indu 76.9 2 4.4E-05 34.2 2.4 39 232-280 1-39 (54)
285 PF12031 DUF3518: Domain of un 76.8 4.7 0.0001 42.4 5.6 80 364-444 138-226 (257)
286 PF14500 MMS19_N: Dos2-interac 75.9 75 0.0016 34.6 14.9 219 396-644 3-238 (262)
287 COG5219 Uncharacterized conser 75.4 1.3 2.9E-05 53.9 1.3 49 232-283 1468-1523(1525)
288 PF12530 DUF3730: Protein of u 75.3 1.2E+02 0.0026 32.4 19.4 206 479-716 2-216 (234)
289 PRK14707 hypothetical protein; 75.3 3.5E+02 0.0076 37.7 42.9 548 323-963 557-1116(2710)
290 KOG1967 DNA repair/transcripti 75.2 46 0.00099 41.6 13.9 150 476-637 866-1018(1030)
291 COG5627 MMS21 DNA repair prote 75.0 1.9 4.2E-05 44.3 2.2 53 233-288 189-244 (275)
292 PF01347 Vitellogenin_N: Lipop 74.9 1.1E+02 0.0023 37.9 18.2 237 352-632 349-611 (618)
293 KOG3665 ZYG-1-like serine/thre 74.2 2.4E+02 0.0052 35.4 20.5 176 459-668 494-676 (699)
294 KOG0828 Predicted E3 ubiquitin 73.5 2.1 4.5E-05 48.6 2.2 33 248-284 603-635 (636)
295 KOG4172 Predicted E3 ubiquitin 73.4 1.4 2.9E-05 34.4 0.5 44 235-282 9-53 (62)
296 COG5218 YCG1 Chromosome conden 72.6 54 0.0012 38.9 13.0 120 506-647 81-200 (885)
297 PF10363 DUF2435: Protein of u 71.6 11 0.00023 33.9 5.8 75 615-696 5-80 (92)
298 COG5116 RPN2 26S proteasome re 71.5 14 0.0003 43.3 8.0 124 557-714 550-673 (926)
299 PF11707 Npa1: Ribosome 60S bi 70.9 1.1E+02 0.0024 34.5 15.4 134 352-487 58-214 (330)
300 KOG1571 Predicted E3 ubiquitin 70.6 2.2 4.9E-05 47.0 1.6 45 230-282 302-346 (355)
301 PF14570 zf-RING_4: RING/Ubox 70.5 3.6 7.8E-05 31.8 2.2 43 236-282 1-47 (48)
302 smart00638 LPD_N Lipoprotein N 70.2 2.7E+02 0.0058 34.1 20.8 234 351-631 312-566 (574)
303 KOG0301 Phospholipase A2-activ 69.2 1.1E+02 0.0025 36.9 14.9 166 357-528 551-727 (745)
304 KOG4185 Predicted E3 ubiquitin 69.1 4.3 9.4E-05 45.1 3.6 62 235-300 5-77 (296)
305 PF08167 RIX1: rRNA processing 68.8 31 0.00068 34.6 9.3 111 889-1006 25-141 (165)
306 KOG2956 CLIP-associating prote 68.7 1.7E+02 0.0037 34.1 15.6 168 363-545 300-476 (516)
307 PF14668 RICTOR_V: Rapamycin-i 68.5 12 0.00027 31.9 5.3 65 494-558 4-70 (73)
308 KOG1788 Uncharacterized conser 67.2 3.3E+02 0.0072 34.9 18.3 280 330-646 664-985 (2799)
309 PF05290 Baculo_IE-1: Baculovi 67.2 6.2 0.00013 37.2 3.4 50 234-285 81-134 (140)
310 PF08324 PUL: PUL domain; Int 66.6 29 0.00062 37.9 9.3 114 362-476 122-242 (268)
311 KOG1992 Nuclear export recepto 66.2 2.9E+02 0.0062 34.6 17.6 186 282-481 339-544 (960)
312 KOG2032 Uncharacterized conser 66.0 1.3E+02 0.0027 35.3 14.0 145 348-495 252-405 (533)
313 KOG1820 Microtubule-associated 66.0 1.9E+02 0.0041 36.8 16.9 180 403-593 264-444 (815)
314 smart00638 LPD_N Lipoprotein N 64.7 2.8E+02 0.0061 33.9 18.5 174 432-641 355-543 (574)
315 PF08167 RIX1: rRNA processing 64.4 64 0.0014 32.4 10.6 110 393-506 26-143 (165)
316 PF14668 RICTOR_V: Rapamycin-i 63.8 14 0.00031 31.5 4.8 59 580-647 4-62 (73)
317 COG5209 RCD1 Uncharacterized p 63.2 57 0.0012 34.0 9.6 145 492-646 115-271 (315)
318 PF11707 Npa1: Ribosome 60S bi 62.6 1.6E+02 0.0036 33.2 14.7 164 519-689 58-238 (330)
319 KOG1020 Sister chromatid cohes 61.3 93 0.002 41.2 13.1 106 518-649 817-927 (1692)
320 PF06416 DUF1076: Protein of u 60.6 6.6 0.00014 35.8 2.3 51 230-285 37-93 (113)
321 KOG3002 Zn finger protein [Gen 59.5 8 0.00017 42.6 3.2 60 229-299 44-104 (299)
322 COG2176 PolC DNA polymerase II 58.6 7 0.00015 49.7 2.8 60 210-285 891-952 (1444)
323 PF01347 Vitellogenin_N: Lipop 57.6 1.3E+02 0.0028 37.2 13.9 181 518-732 396-587 (618)
324 COG5175 MOT2 Transcriptional r 56.7 8.4 0.00018 41.8 2.7 48 234-285 15-66 (480)
325 KOG4653 Uncharacterized conser 56.2 1.7E+02 0.0037 36.6 13.5 186 520-734 730-918 (982)
326 cd03561 VHS VHS domain family; 55.8 40 0.00086 32.5 7.1 71 351-421 38-112 (133)
327 COG5116 RPN2 26S proteasome re 55.4 23 0.00049 41.6 5.9 66 888-965 550-616 (926)
328 KOG1820 Microtubule-associated 55.0 3.7E+02 0.008 34.2 16.8 190 482-696 258-451 (815)
329 KOG4265 Predicted E3 ubiquitin 54.6 8.3 0.00018 42.7 2.3 46 233-283 290-336 (349)
330 PF12074 DUF3554: Domain of un 53.7 3.7E+02 0.008 30.3 15.7 219 455-692 6-239 (339)
331 PF04641 Rtf2: Rtf2 RING-finge 53.5 15 0.00033 40.0 4.2 35 232-266 33-68 (260)
332 COG5218 YCG1 Chromosome conden 53.2 51 0.0011 39.1 8.3 106 350-468 91-199 (885)
333 cd03569 VHS_Hrs_Vps27p VHS dom 52.8 42 0.00091 32.8 6.7 71 351-421 42-114 (142)
334 PF06025 DUF913: Domain of Unk 52.2 4.3E+02 0.0092 30.5 16.2 81 449-529 122-208 (379)
335 KOG1967 DNA repair/transcripti 51.9 82 0.0018 39.5 10.1 148 391-540 866-1018(1030)
336 KOG2137 Protein kinase [Signal 51.9 72 0.0016 39.0 9.6 133 391-530 388-521 (700)
337 PF14205 Cys_rich_KTR: Cystein 51.8 10 0.00022 30.0 1.7 28 234-281 5-37 (55)
338 cd03568 VHS_STAM VHS domain fa 51.7 44 0.00094 32.8 6.6 71 351-421 38-110 (144)
339 KOG2032 Uncharacterized conser 51.6 4.7E+02 0.01 30.9 21.6 155 519-688 260-416 (533)
340 PF03130 HEAT_PBS: PBS lyase H 51.1 11 0.00023 25.3 1.6 13 818-830 1-13 (27)
341 COG5098 Chromosome condensatio 49.8 77 0.0017 38.4 9.1 138 352-506 894-1037(1128)
342 COG5098 Chromosome condensatio 48.5 85 0.0018 38.0 9.2 116 891-1014 301-421 (1128)
343 PF08506 Cse1: Cse1; InterPro 48.4 19 0.00042 41.2 4.2 150 667-826 218-370 (370)
344 PF11865 DUF3385: Domain of un 48.2 1.8E+02 0.0039 29.0 10.6 143 479-641 12-155 (160)
345 KOG1940 Zn-finger protein [Gen 48.1 11 0.00024 40.8 2.0 43 233-280 158-204 (276)
346 PF14446 Prok-RING_1: Prokaryo 48.1 15 0.00032 29.2 2.2 28 233-260 5-36 (54)
347 KOG4713 Cyclin-dependent kinas 47.7 21 0.00046 35.2 3.6 41 44-84 138-179 (189)
348 KOG0915 Uncharacterized conser 47.5 8.9E+02 0.019 32.9 29.8 175 352-532 1000-1187(1702)
349 PF13811 DUF4186: Domain of un 47.4 12 0.00027 34.1 1.9 21 245-266 64-87 (111)
350 PF12530 DUF3730: Protein of u 46.1 4E+02 0.0086 28.4 19.1 131 446-593 11-152 (234)
351 KOG4362 Transcriptional regula 45.8 6.6 0.00014 47.5 -0.1 67 230-298 18-84 (684)
352 cd03567 VHS_GGA VHS domain fam 44.4 69 0.0015 31.2 6.7 70 351-420 39-115 (139)
353 PLN02189 cellulose synthase 44.4 15 0.00032 46.8 2.6 46 234-283 35-87 (1040)
354 KOG1243 Protein kinase [Genera 43.9 3.3E+02 0.0072 33.4 13.3 187 474-686 327-513 (690)
355 PF14353 CpXC: CpXC protein 42.8 14 0.0003 35.4 1.6 48 233-282 1-48 (128)
356 PF14726 RTTN_N: Rotatin, an a 42.6 1.6E+02 0.0034 26.9 8.1 67 433-501 29-95 (98)
357 KOG0825 PHD Zn-finger protein 41.5 31 0.00067 41.9 4.4 52 229-280 92-151 (1134)
358 KOG0413 Uncharacterized conser 41.3 9E+02 0.019 31.2 18.2 64 936-1006 1008-1071(1529)
359 cd03561 VHS VHS domain family; 40.6 1.4E+02 0.003 28.7 8.2 77 517-595 37-115 (133)
360 PLN02195 cellulose synthase A 40.5 20 0.00044 45.3 2.9 45 235-283 8-59 (977)
361 KOG2930 SCF ubiquitin ligase, 40.4 23 0.00049 31.9 2.4 27 250-281 80-106 (114)
362 smart00288 VHS Domain present 40.3 83 0.0018 30.3 6.6 71 351-421 38-111 (133)
363 PF11864 DUF3384: Domain of un 39.8 7.1E+02 0.015 29.6 18.0 52 628-689 229-286 (464)
364 KOG4275 Predicted E3 ubiquitin 39.3 5.7 0.00012 42.4 -1.8 40 233-281 300-340 (350)
365 cd03569 VHS_Hrs_Vps27p VHS dom 38.8 1.2E+02 0.0025 29.7 7.4 74 517-594 41-116 (142)
366 PF11865 DUF3385: Domain of un 38.8 2.8E+02 0.0061 27.6 10.3 142 393-544 11-155 (160)
367 PF10367 Vps39_2: Vacuolar sor 38.7 12 0.00027 34.3 0.5 32 230-261 75-108 (109)
368 KOG2676 Uncharacterized conser 38.6 33 0.00071 38.1 3.7 63 328-390 376-440 (478)
369 PF14569 zf-UDP: Zinc-binding 38.2 35 0.00076 29.2 3.0 47 233-283 9-62 (80)
370 COG1592 Rubrerythrin [Energy p 38.0 21 0.00045 35.7 2.0 25 233-281 134-158 (166)
371 KOG2933 Uncharacterized conser 37.0 1.8E+02 0.0039 32.1 8.9 136 482-638 93-229 (334)
372 PF00790 VHS: VHS domain; Int 36.6 67 0.0015 31.2 5.4 71 351-421 43-118 (140)
373 PF07923 N1221: N1221-like pro 35.6 69 0.0015 35.5 5.9 59 887-945 58-127 (293)
374 smart00288 VHS Domain present 35.4 73 0.0016 30.7 5.3 70 662-732 40-109 (133)
375 PHA02825 LAP/PHD finger-like p 35.0 44 0.00095 32.9 3.6 48 232-283 7-59 (162)
376 cd03568 VHS_STAM VHS domain fa 34.8 1.4E+02 0.003 29.3 7.1 74 517-594 37-112 (144)
377 PF06685 DUF1186: Protein of u 34.7 6.2E+02 0.013 27.3 13.8 83 389-485 70-161 (249)
378 smart00567 EZ_HEAT E-Z type HE 34.6 37 0.0008 23.0 2.3 13 817-829 2-14 (30)
379 PF06685 DUF1186: Protein of u 34.5 4.7E+02 0.01 28.3 11.6 74 473-556 69-153 (249)
380 cd00730 rubredoxin Rubredoxin; 34.5 18 0.00039 28.4 0.7 13 229-241 30-42 (50)
381 PF14225 MOR2-PAG1_C: Cell mor 34.4 6.4E+02 0.014 27.4 19.3 177 350-545 64-253 (262)
382 KOG2933 Uncharacterized conser 34.1 1.7E+02 0.0037 32.3 8.2 141 518-687 89-233 (334)
383 PF10363 DUF2435: Protein of u 33.4 87 0.0019 28.1 5.0 67 354-422 7-73 (92)
384 COG5220 TFB3 Cdk activating ki 33.3 13 0.00027 38.6 -0.3 47 232-282 9-63 (314)
385 PF11864 DUF3384: Domain of un 33.2 8.9E+02 0.019 28.7 20.0 77 405-488 42-118 (464)
386 PLN02638 cellulose synthase A 32.7 30 0.00064 44.4 2.6 46 234-283 18-70 (1079)
387 PRK11088 rrmA 23S rRNA methylt 32.6 21 0.00045 39.1 1.2 26 233-258 2-30 (272)
388 PF00301 Rubredoxin: Rubredoxi 32.2 21 0.00046 27.6 0.8 13 229-241 30-42 (47)
389 cd03567 VHS_GGA VHS domain fam 32.0 2.1E+02 0.0046 27.9 7.8 77 517-593 38-117 (139)
390 PLN02436 cellulose synthase A 31.4 32 0.00068 44.1 2.5 46 234-283 37-89 (1094)
391 PF11791 Aconitase_B_N: Aconit 31.4 1.5E+02 0.0033 29.1 6.5 29 435-465 95-123 (154)
392 smart00834 CxxC_CXXC_SSSS Puta 31.2 31 0.00066 25.4 1.5 33 232-282 4-36 (41)
393 KOG1812 Predicted E3 ubiquitin 30.8 39 0.00086 38.9 3.1 45 233-277 146-195 (384)
394 PF06844 DUF1244: Protein of u 30.8 32 0.0007 28.3 1.6 13 255-267 12-24 (68)
395 cd00729 rubredoxin_SM Rubredox 30.6 36 0.00077 24.3 1.7 10 272-281 18-27 (34)
396 PF10272 Tmpp129: Putative tra 30.2 40 0.00088 38.1 2.9 39 248-286 303-354 (358)
397 PF14500 MMS19_N: Dos2-interac 30.2 7.4E+02 0.016 26.9 15.9 213 355-593 4-238 (262)
398 PF07191 zinc-ribbons_6: zinc- 29.7 4.6 9.9E-05 33.9 -3.4 42 233-284 1-42 (70)
399 PF14225 MOR2-PAG1_C: Cell mor 29.3 7.7E+02 0.017 26.8 18.6 216 356-594 13-256 (262)
400 PF12830 Nipped-B_C: Sister ch 29.3 6.3E+02 0.014 25.8 12.8 67 351-423 9-76 (187)
401 PF13251 DUF4042: Domain of un 29.1 3.6E+02 0.0078 27.6 9.3 141 408-549 2-177 (182)
402 KOG1566 Conserved protein Mo25 29.1 8.4E+02 0.018 27.2 19.2 200 345-549 74-289 (342)
403 KOG1814 Predicted E3 ubiquitin 28.9 56 0.0012 37.0 3.7 63 232-298 183-251 (445)
404 PF11791 Aconitase_B_N: Aconit 28.9 45 0.00098 32.6 2.6 27 891-917 96-122 (154)
405 PF08216 CTNNBL: Catenin-beta- 28.3 81 0.0018 29.1 4.0 77 291-368 26-105 (108)
406 PF14726 RTTN_N: Rotatin, an a 27.9 3.3E+02 0.0071 24.8 7.8 61 350-411 30-90 (98)
407 PRK14890 putative Zn-ribbon RN 27.6 30 0.00066 28.0 1.0 33 232-280 24-56 (59)
408 PF03854 zf-P11: P-11 zinc fin 27.4 20 0.00043 27.5 -0.0 37 243-284 10-47 (50)
409 PF09806 CDK2AP: Cyclin-depend 27.4 31 0.00067 35.2 1.3 41 44-84 142-183 (193)
410 KOG1243 Protein kinase [Genera 26.6 4.6E+02 0.01 32.3 10.8 183 348-542 328-511 (690)
411 KOG2137 Protein kinase [Signal 26.2 4.4E+02 0.0094 32.6 10.5 135 512-672 384-521 (700)
412 smart00504 Ubox Modified RING 26.1 32 0.00069 28.0 0.9 29 233-263 35-63 (63)
413 COG2888 Predicted Zn-ribbon RN 26.1 39 0.00085 27.3 1.3 32 232-280 26-58 (61)
414 PF00096 zf-C2H2: Zinc finger, 26.1 22 0.00048 22.4 -0.0 14 234-247 1-14 (23)
415 PLN02915 cellulose synthase A 26.1 44 0.00095 42.8 2.5 46 234-283 16-68 (1044)
416 PF08216 CTNNBL: Catenin-beta- 26.0 70 0.0015 29.5 3.1 42 453-494 63-104 (108)
417 PF10521 DUF2454: Protein of u 25.6 4.9E+02 0.011 28.6 10.5 51 518-568 120-172 (282)
418 PRK05978 hypothetical protein; 25.4 39 0.00084 33.1 1.5 32 234-285 34-65 (148)
419 KOG1949 Uncharacterized conser 25.2 1.2E+03 0.027 28.9 13.7 198 469-687 166-369 (1005)
420 PF10915 DUF2709: Protein of u 25.0 61 0.0013 32.6 2.7 36 233-281 87-122 (238)
421 KOG1941 Acetylcholine receptor 25.0 38 0.00081 37.8 1.4 44 233-279 365-412 (518)
422 cd08324 CARD_NOD1_CARD4 Caspas 24.7 2.8E+02 0.0062 24.4 6.3 73 33-113 4-76 (85)
423 KOG2114 Vacuolar assembly/sort 24.6 40 0.00088 41.6 1.7 43 230-280 837-880 (933)
424 PF00619 CARD: Caspase recruit 24.3 2.6E+02 0.0055 24.1 6.5 63 32-94 4-67 (85)
425 PF12830 Nipped-B_C: Sister ch 24.0 2.5E+02 0.0055 28.7 7.3 69 612-689 7-75 (187)
426 PF11315 Med30: Mediator compl 23.9 5.5E+02 0.012 25.4 9.0 79 32-115 43-146 (150)
427 cd00350 rubredoxin_like Rubred 23.8 55 0.0012 23.1 1.6 10 272-281 17-26 (33)
428 PF04821 TIMELESS: Timeless pr 23.0 1E+03 0.022 25.9 15.2 56 323-378 9-71 (266)
429 KOG3579 Predicted E3 ubiquitin 22.8 39 0.00085 36.1 1.0 47 232-278 267-317 (352)
430 KOG4231 Intracellular membrane 22.8 42 0.00091 39.0 1.3 149 410-570 223-382 (763)
431 PF13248 zf-ribbon_3: zinc-rib 22.6 55 0.0012 21.7 1.4 11 272-282 16-26 (26)
432 PHA02862 5L protein; Provision 22.3 63 0.0014 31.2 2.2 45 235-283 4-53 (156)
433 cd08330 CARD_ASC_NALP1 Caspase 21.1 3.4E+02 0.0073 23.7 6.4 52 33-84 4-55 (82)
434 TIGR01206 lysW lysine biosynth 21.0 33 0.00072 27.4 0.1 38 233-289 2-39 (54)
435 PF00790 VHS: VHS domain; Int 20.9 2.8E+02 0.0061 26.8 6.6 75 888-964 41-118 (140)
436 PF12205 GIT1_C: G protein-cou 20.5 7.5E+02 0.016 23.6 10.4 72 10-87 14-88 (123)
437 PF08506 Cse1: Cse1; InterPro 20.3 6.6E+02 0.014 28.9 10.4 150 387-541 205-370 (370)
438 PF07800 DUF1644: Protein of u 20.0 37 0.0008 33.3 0.2 20 232-251 1-20 (162)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=2.9e-55 Score=555.00 Aligned_cols=634 Identities=18% Similarity=0.167 Sum_probs=518.4
Q ss_pred CCHHHHHHHHHHHHHHHhcccccchHHHh-cCChHHHHHHhhcCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHH
Q 001733 320 GSDRMVLEAIKDLQTVCQRKQYNKVQVRN-VGVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILI 398 (1019)
Q Consensus 320 ~~~~~~~~Al~~L~~l~~~~~~~r~~i~~-~g~i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv 398 (1019)
++++++.+|+.+|+.+++++++||..|++ .|+||.|+.+|.+++..+|++|+.+|.+++ .++++|..|+..|+||+|+
T Consensus 27 ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS-~~e~nk~~Iv~~GaIppLV 105 (2102)
T PLN03200 27 SSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLC-KEEDLRVKVLLGGCIPPLL 105 (2102)
T ss_pred CCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHh-cCHHHHHHHHHcCChHHHH
Confidence 35788999999999999999999999986 899999999999999999999999999998 7789999999999999999
Q ss_pred HHhcCCChhHHHHHHHHHHHhccC---hhhhhhhhcccchHHHHHHhhhcCCC-ChHHHHHHHHHHHHhcCCCCchH-HH
Q 001733 399 KLLSSSHRPVRHESLLLLLELSST---RSLCEKIGSIPGGILVLITFKFNWSI-DVFAAEIADQILRNLERNPDNIK-CM 473 (1019)
Q Consensus 399 ~lL~~~~~~~r~~Aa~~L~~Ls~~---~~~~~~i~~~~g~I~~LV~lL~~~~~-~~~~~~~A~~aL~nLs~~~~n~~-~i 473 (1019)
.+|++++++.|++|+.+|++|+.+ +.++..|+...|+||+|+.++++++. +..+++.|+.+|+||+.+++|+. .+
T Consensus 106 ~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~I 185 (2102)
T PLN03200 106 SLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSAT 185 (2102)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccchHHHH
Confidence 999999999999999999999987 45666777779999999999975432 33456778899999999999985 45
Q ss_pred HhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC-ccccccccc-chHHHHHHHHhcCC-hHHHHHHHHHHHHhhcCC-c
Q 001733 474 AENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLG-HDSKINVPG-RAASTLIRMVHSGN-SLTRRIAFKALMQISSHH-P 549 (1019)
Q Consensus 474 ~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~-~~~~~~i~~-~~i~~Lv~lL~~~~-~~~~~~A~~aL~~Ls~~~-~ 549 (1019)
+++|+||.|+.+|.++++..+.+++++|.+++.+ ++++..+.+ |++|.|+++|++++ +.++++|+++|.+|++++ +
T Consensus 186 IeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e 265 (2102)
T PLN03200 186 LEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKE 265 (2102)
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHH
Confidence 8999999999999999999999999999998875 668888876 68999999998764 589999999999999875 5
Q ss_pred chHHHHHcCcHHHHHHHHhhhccCC----CChhHHHHHHHHHHHHHhcCCC-----------ccc---------------
Q 001733 550 SCKILVEAGIVQVMAEEMFIRIIHN----EPMNSKEEAAAILANILESGLE-----------HHS--------------- 599 (1019)
Q Consensus 550 ~~~~l~~~G~v~~Lv~lL~~~~~~~----~~~~~~~~A~~~L~~L~~~~~~-----------~~~--------------- 599 (1019)
+++.+++.|++++|++++.....++ .+..++++|.|+|.|||.+... .+.
T Consensus 266 ~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll 345 (2102)
T PLN03200 266 AKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYAL 345 (2102)
T ss_pred HHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHH
Confidence 6999999999999999987433110 1236799999999999984211 000
Q ss_pred ---------c-cccc--------------c---------------------CcccchhhhHHHHHHHHcCCCCHHHHHHH
Q 001733 600 ---------L-QVNS--------------H---------------------GHTMVSDYVVYNIIYMLKNSTPDELNVHL 634 (1019)
Q Consensus 600 ---------~-~v~~--------------~---------------------g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a 634 (1019)
. .+++ + .+.+...++++.|+.||.. ++.++|..+
T Consensus 346 ~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~-~~~evQ~~A 424 (2102)
T PLN03200 346 MVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITM-ATADVQEEL 424 (2102)
T ss_pred HhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhcc-CCHHHHHHH
Confidence 0 0000 0 0012233556677788887 788999999
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHhCcCCChhHHHHhhhcCCChhHhhcccCC
Q 001733 635 IRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCPTE 714 (1019)
Q Consensus 635 ~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~~vr~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~LV~lL~~ 714 (1019)
+++|+.+|.++ .+.++.|.+.|+++.|+++|.+++..+|..|+++|++|+...++.....+. +|+|++|+++|.+
T Consensus 425 v~aL~~L~~~~---~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIie--aGaIP~LV~LL~s 499 (2102)
T PLN03200 425 IRALSSLCCGK---GGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITA--AGGIPPLVQLLET 499 (2102)
T ss_pred HHHHHHHhCCC---HHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH--CCCHHHHHHHHcC
Confidence 99999999865 356788999999999999999999999999999999999654433333333 6999999999987
Q ss_pred CCcChHHHHHHHHHHhccCCCChhhHHHHHhCCChHHHHHHHHhhhccCCCc----------------------------
Q 001733 715 TIHITEKQAVSAKFLAKLPHQNLTLNLALSARNVVPTILQTINLIQRSGTRT---------------------------- 766 (1019)
Q Consensus 715 ~~~~~~~~~~A~~~L~nL~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~---------------------------- 766 (1019)
++ .+++..|+++|+|++.++.+.+..+.++|+++.|+++|.+. ..+.
T Consensus 500 ~~--~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sg---d~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLl 574 (2102)
T PLN03200 500 GS--QKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNG---GPKGQEIAAKTLTKLVRTADAATISQLTALLL 574 (2102)
T ss_pred CC--HHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCC---CHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Confidence 75 69999999999999987767766666899999999998742 1000
Q ss_pred --------------------------------------------cchhhhHHHHHHHHHHHHhcCCCchhHHHHHHhCCc
Q 001733 767 --------------------------------------------SRYASAYLEGLIGILVRFTTTLYEPQILFLARTHNF 802 (1019)
Q Consensus 767 --------------------------------------------~~~~~~~~e~a~~aL~~lt~~~~~~~~~~~~~~~g~ 802 (1019)
......+++.++++|.+++.+ ++++.+.+.+.|+
T Consensus 575 sdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~--~~d~~~avv~aga 652 (2102)
T PLN03200 575 GDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSS--RQDLCESLATDEI 652 (2102)
T ss_pred CCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcC--ChHHHHHHHHcCC
Confidence 001223556677778888775 7777888899999
Q ss_pred hHHHHHHHhcCCcHHHHHHHHHHHhhhcccCCcCCCCCCcCCcccccccccCcccccCCCCCCCCCCCcccCCccccCcc
Q 001733 803 TSVFTELLMKTSCDEVQKLAAIGLENLSSESINLSKPPQIKSKKFMKFFSLPKSLSVGSSKKKSVSLCPVHRGACSSQNT 882 (1019)
Q Consensus 803 i~~Lv~LL~~~~~~~vk~~AA~aL~nLs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~v~~~~cs~~~~ 882 (1019)
+|+|+.+|++ ++.++++.|||+|.|++.+... .+.
T Consensus 653 IpPLV~LLss-~~~~v~keAA~AL~nL~~~~~~--------------------------------------------~q~ 687 (2102)
T PLN03200 653 INPCIKLLTN-NTEAVATQSARALAALSRSIKE--------------------------------------------NRK 687 (2102)
T ss_pred HHHHHHHHhc-CChHHHHHHHHHHHHHHhCCCH--------------------------------------------HHH
Confidence 9999999999 9999999999999999864410 122
Q ss_pred chhhhccchHHHHhhhccCchhhHHHHHHHHHhhhccCcchhhHHHHHHhccchHHHHHHHhhcChhhHHHHHHHHHHHH
Q 001733 883 FCLIDAKAVDRLLACLYHENVEVVEAALSALCTLLDEKVDVDKSVSMLSEVNAIQHVLNVVKEHRQEVLQQKSFWMIERF 962 (1019)
Q Consensus 883 ~~Lv~~gai~~Lv~lL~~~d~~v~~~Al~AL~~L~~d~~~~~~~~~~i~~~~~i~~l~~lL~~~~~~~~~~~A~~aL~~i 962 (1019)
..++++|+|+||+++|.+.|.++++.|+.||.+++.+++ +...+.+.|+|++|+++|+ ++++..++.|+|+|.++
T Consensus 688 ~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e----~~~ei~~~~~I~~Lv~lLr-~G~~~~k~~Aa~AL~~L 762 (2102)
T PLN03200 688 VSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPE----VAAEALAEDIILPLTRVLR-EGTLEGKRNAARALAQL 762 (2102)
T ss_pred HHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCch----HHHHHHhcCcHHHHHHHHH-hCChHHHHHHHHHHHHH
Confidence 346789999999999999999999999999999999876 5566778899999999998 89999999999999999
Q ss_pred HhhCCccc-cccccccccchHHHHHHhhcCCchhhHH--HHHHHHHhccCCCCCCCCC
Q 001733 963 LVKGGNKQ-ASDISQDRLLPATLVSAFHHGDVNTRQM--AEKILRHLNKMPNFSASTY 1017 (1019)
Q Consensus 963 ~~~~~~~~-~~~~~~~~~~~~~Lv~ll~~~~~~~~~~--Aa~~L~~L~~~~~~s~~~~ 1017 (1019)
++....+. ...+....+.+.+|+++|...|...... |..+|+.|.+....+..+|
T Consensus 763 ~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~ 820 (2102)
T PLN03200 763 LKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSH 820 (2102)
T ss_pred HhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCC
Confidence 98743333 2244444556677999999999877776 9999999999865555443
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=1.6e-48 Score=493.92 Aligned_cols=610 Identities=16% Similarity=0.135 Sum_probs=484.5
Q ss_pred ChHHHHHHhhcC--CHHHHHHHHHHHHhhccCChhHHHHHHh-cCCHHHHHHHhcCCChhHHHHHHHHHHHhccChhhhh
Q 001733 351 VLPLLTKLLEYK--DRNVRCAAMELLRQLVVEDDEGKEMIAE-TMDISILIKLLSSSHRPVRHESLLLLLELSSTRSLCE 427 (1019)
Q Consensus 351 ~i~~Lv~lL~s~--~~~~~~~Al~~L~~La~~~~~~k~~I~~-~g~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~~~~~~ 427 (1019)
.+..|++-|.++ +++.++.|+..|+.+++.+++||..|++ .|+||.|+.+|++++..+|++|+.+|.+|+.+++++.
T Consensus 14 ~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~nk~ 93 (2102)
T PLN03200 14 SVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLRV 93 (2102)
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHH
Confidence 366788888866 7899999999999999999999999996 8999999999999999999999999999999999999
Q ss_pred hhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCC---CCchHH-HHhcCChHHHHHHhccCC---HHHHHHHHHH
Q 001733 428 KIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERN---PDNIKC-MAENGLLEPLMHHLNEGS---EEIQMEMASY 500 (1019)
Q Consensus 428 ~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~---~~n~~~-i~~~G~i~~Lv~lL~~~~---~~~~~~aa~~ 500 (1019)
.|+. .|+||+||.+|+ +++++++++|+.+|++|+.+ +.++.. +++.|+||+|+.+|.+++ ..++..++.+
T Consensus 94 ~Iv~-~GaIppLV~LL~--sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~A 170 (2102)
T PLN03200 94 KVLL-GGCIPPLLSLLK--SGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGA 170 (2102)
T ss_pred HHHH-cCChHHHHHHHH--CCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHH
Confidence 9986 999999999996 45799999999999999976 344544 567899999999999874 2356677899
Q ss_pred HHHhccCcccccc-ccc-chHHHHHHHHhcCChHHHHHHHHHHHHhhcCC-cchHHHHHcCcHHHHHHHHhhhccCCCCh
Q 001733 501 LGEIVLGHDSKIN-VPG-RAASTLIRMVHSGNSLTRRIAFKALMQISSHH-PSCKILVEAGIVQVMAEEMFIRIIHNEPM 577 (1019)
Q Consensus 501 L~~La~~~~~~~~-i~~-~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~-~~~~~l~~~G~v~~Lv~lL~~~~~~~~~~ 577 (1019)
|.+|+.+++++.. +.+ |++|.|+++|+++++..++.|+++|.+++.+. +.+..++++|+||.|+++|.+.. +.
T Consensus 171 L~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~----~~ 246 (2102)
T PLN03200 171 LRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGN----EV 246 (2102)
T ss_pred HHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCC----Ch
Confidence 9999999888754 344 78999999999999999999999999998774 46889999999999999997532 24
Q ss_pred hHHHHHHHHHHHHHhcCCCcccccccccCcccchhhhHHHHHHHHcCCCC---------HHHHHHHHHHHHHHhCCCCc-
Q 001733 578 NSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTP---------DELNVHLIRILQCLTKSPKP- 647 (1019)
Q Consensus 578 ~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~---------~~v~~~a~~aL~~La~~~~~- 647 (1019)
.+|+.|+++|.||+..+.... ..+...|+|+.|++++.. ++ ..++++|+++|.++|.....
T Consensus 247 ~VRE~AA~AL~nLAs~s~e~r--------~~Iv~aGgIp~LI~lL~s-p~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~l 317 (2102)
T PLN03200 247 SVRAEAAGALEALSSQSKEAK--------QAIADAGGIPALINATVA-PSKEFMQGEFAQALQENAMGALANICGGMSAL 317 (2102)
T ss_pred HHHHHHHHHHHHHhcCCHHHH--------HHHHHCCCHHHHHHHHhC-cchhhhccccchHHHHHHHHHHHHHhCCchhh
Confidence 889999999999998754433 345678889999999985 33 45689999999998873110
Q ss_pred ----------h----------------------------------------------------HH-------------HH
Q 001733 648 ----------M----------------------------------------------------AT-------------IV 652 (1019)
Q Consensus 648 ----------~----------------------------------------------------~~-------------i~ 652 (1019)
. +. .+
T Consensus 318 l~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~ 397 (2102)
T PLN03200 318 ILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLS 397 (2102)
T ss_pred HHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHH
Confidence 0 00 01
Q ss_pred HHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHhCcCCChhHHHHhhhcCCChhHhhcccCCCCcChHHHHHHHHHHhcc
Q 001733 653 SVIKETEASYSLLEVINNPHDELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCPTETIHITEKQAVSAKFLAKL 732 (1019)
Q Consensus 653 ~~i~~~g~i~~Lv~LL~~~~~~vr~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~LV~lL~~~~~~~~~~~~A~~~L~nL 732 (1019)
+.+.+.++++.|+.||...+.++|..++++|.+|+.+..+ ..+.+.. .|+++.||++|.+++ .+.+..|+++|+|+
T Consensus 398 ~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e-~~~aIi~-~ggIp~LV~LL~s~s--~~iQ~~A~~~L~nL 473 (2102)
T PLN03200 398 RKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGG-LWEALGG-REGVQLLISLLGLSS--EQQQEYAVALLAIL 473 (2102)
T ss_pred HHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHH-HHHHHHH-cCcHHHHHHHHcCCC--HHHHHHHHHHHHHH
Confidence 1234567788888888888899999999999999976444 4444443 589999999999875 58999999999999
Q ss_pred CCCChhhHHHHHhCCChHHHHHHHHhhhccCCCccchhhhHHHHHHHHHHHHhcCCCchhHHHHHHhCCchHHHHHHHhc
Q 001733 733 PHQNLTLNLALSARNVVPTILQTINLIQRSGTRTSRYASAYLEGLIGILVRFTTTLYEPQILFLARTHNFTSVFTELLMK 812 (1019)
Q Consensus 733 ~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~lt~~~~~~~~~~~~~~~g~i~~Lv~LL~~ 812 (1019)
..++++++..+.++|++|.|+++|.. ....+++.++++|.+++.. +++.+..+.++|++|.|+++|++
T Consensus 474 a~~ndenr~aIieaGaIP~LV~LL~s----------~~~~iqeeAawAL~NLa~~--~~qir~iV~~aGAIppLV~LL~s 541 (2102)
T PLN03200 474 TDEVDESKWAITAAGGIPPLVQLLET----------GSQKAKEDSATVLWNLCCH--SEDIRACVESAGAVPALLWLLKN 541 (2102)
T ss_pred HcCCHHHHHHHHHCCCHHHHHHHHcC----------CCHHHHHHHHHHHHHHhCC--cHHHHHHHHHCCCHHHHHHHHhC
Confidence 99888889999999999999999963 1346789999999999973 66777778789999999999999
Q ss_pred CCcHHHHHHHHHHHhhhcccCCcCCCCCCcCCcccccccccCcccccCCCCCCCCCCCcccCCccc---cC--ccchhhh
Q 001733 813 TSCDEVQKLAAIGLENLSSESINLSKPPQIKSKKFMKFFSLPKSLSVGSSKKKSVSLCPVHRGACS---SQ--NTFCLID 887 (1019)
Q Consensus 813 ~~~~~vk~~AA~aL~nLs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~v~~~~cs---~~--~~~~Lv~ 887 (1019)
+++++|..|+++|.||+.++..-. . +.++..+... + .........+.+.+.+ .+ .+.....
T Consensus 542 -gd~~~q~~Aa~AL~nLi~~~d~~~-I-----~~Lv~LLlsd------d-~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~ 607 (2102)
T PLN03200 542 -GGPKGQEIAAKTLTKLVRTADAAT-I-----SQLTALLLGD------L-PESKVHVLDVLGHVLSVASLEDLVREGSAA 607 (2102)
T ss_pred -CCHHHHHHHHHHHHHHHhccchhH-H-----HHHHHHhcCC------C-hhHHHHHHHHHHHHHhhcchhHHHHHhhhc
Confidence 999999999999999987652110 0 0111111100 0 0000000000111101 11 1111224
Q ss_pred ccchHHHHhhhccCchhhHHHHHHHHHhhhccCcchhhHHHHHHhccchHHHHHHHhhcChhhHHHHHHHHHHHHHhhCC
Q 001733 888 AKAVDRLLACLYHENVEVVEAALSALCTLLDEKVDVDKSVSMLSEVNAIQHVLNVVKEHRQEVLQQKSFWMIERFLVKGG 967 (1019)
Q Consensus 888 ~gai~~Lv~lL~~~d~~v~~~Al~AL~~L~~d~~~~~~~~~~i~~~~~i~~l~~lL~~~~~~~~~~~A~~aL~~i~~~~~ 967 (1019)
.|+|++|+++|+++++.+++.|+.+|.++..... ..+..+...|||+|++.+|. +++.+++..|+|+|..+++...
T Consensus 608 ~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~---d~~~avv~agaIpPLV~LLs-s~~~~v~keAA~AL~nL~~~~~ 683 (2102)
T PLN03200 608 NDALRTLIQLLSSSKEETQEKAASVLADIFSSRQ---DLCESLATDEIINPCIKLLT-NNTEAVATQSARALAALSRSIK 683 (2102)
T ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCh---HHHHHHHHcCCHHHHHHHHh-cCChHHHHHHHHHHHHHHhCCC
Confidence 6899999999999999999999999999997643 45677889999999999998 8999999999999999998633
Q ss_pred ccccccccccccchHHHHHHhhcCCchhhHHHHHHHHHhccCCC
Q 001733 968 NKQASDISQDRLLPATLVSAFHHGDVNTRQMAEKILRHLNKMPN 1011 (1019)
Q Consensus 968 ~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~~L~~L~~~~~ 1011 (1019)
.+....+ ..++.+..|+++|.++|..++..|+.+|+++...++
T Consensus 684 ~~q~~~~-v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e 726 (2102)
T PLN03200 684 ENRKVSY-AAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPE 726 (2102)
T ss_pred HHHHHHH-HHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCch
Confidence 3333333 233445569999999999999999999999998875
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-38 Score=355.96 Aligned_cols=410 Identities=16% Similarity=0.199 Sum_probs=345.9
Q ss_pred HHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCc--hHHHHhcCChHHHHHHhc-cCCHHHHHHHHHHHHHhccC-cccc
Q 001733 436 ILVLITFKFNWSIDVFAAEIADQILRNLERNPDN--IKCMAENGLLEPLMHHLN-EGSEEIQMEMASYLGEIVLG-HDSK 511 (1019)
Q Consensus 436 I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n--~~~i~~~G~i~~Lv~lL~-~~~~~~~~~aa~~L~~La~~-~~~~ 511 (1019)
.+.++..+ .++++..+..+...++.|...+.| ...+...|.||.||+.|. ..++.++.+|+|+|.|+|+. .+..
T Consensus 68 ~~~~~~~~--~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T 145 (514)
T KOG0166|consen 68 LELMLAAL--YSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQT 145 (514)
T ss_pred hHHHHHHH--hCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhc
Confidence 34455555 366777788888888888655443 456667799999999997 55699999999999999984 3433
Q ss_pred ccccc-chHHHHHHHHhcCChHHHHHHHHHHHHhhcCCcc-hHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHH
Q 001733 512 INVPG-RAASTLIRMVHSGNSLTRRIAFKALMQISSHHPS-CKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILAN 589 (1019)
Q Consensus 512 ~~i~~-~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~-~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~ 589 (1019)
..+.+ |++|.+++++.+++..+++.|+|+|.|++.+++. |+.+++.|++++|+.++.... +....+++.|+|.|
T Consensus 146 ~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~----~~~~lRn~tW~LsN 221 (514)
T KOG0166|consen 146 KVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSD----KLSMLRNATWTLSN 221 (514)
T ss_pred cccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhcccc----chHHHHHHHHHHHH
Confidence 44444 6899999999999999999999999999999875 899999999999999888653 23678899999999
Q ss_pred HHhcCCCcccccccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhc
Q 001733 590 ILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVIN 669 (1019)
Q Consensus 590 L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~ 669 (1019)
||.+.... |.+ .. + ...++.|..++.
T Consensus 222 lcrgk~P~------------------------------P~~------------------~~-v-----~~iLp~L~~ll~ 247 (514)
T KOG0166|consen 222 LCRGKNPS------------------------------PPF------------------DV-V-----APILPALLRLLH 247 (514)
T ss_pred HHcCCCCC------------------------------CcH------------------HH-H-----HHHHHHHHHHHh
Confidence 99875321 110 01 1 145778888999
Q ss_pred CCCHHHHHHHHHHHHHhCcCCChhHHHHhhhcCCChhHhhcccCCCCcChHHHHHHHHHHhccCCCChhhHHHHHhCCCh
Q 001733 670 NPHDELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCPTETIHITEKQAVSAKFLAKLPHQNLTLNLALSARNVV 749 (1019)
Q Consensus 670 ~~~~~vr~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~LV~lL~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~l~~~g~l 749 (1019)
+.|+++...|+|++++|+++..+.+...+. .|.++.||.+|.++. ..++.+|+.+++|+..+++.+++.+++.|++
T Consensus 248 ~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~--~gvv~~LV~lL~~~~--~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L 323 (514)
T KOG0166|consen 248 STDEEVLTDACWALSYLTDGSNEKIQMVID--AGVVPRLVDLLGHSS--PKVVTPALRAIGNIVTGSDEQTQVVINSGAL 323 (514)
T ss_pred cCCHHHHHHHHHHHHHHhcCChHHHHHHHH--ccchHHHHHHHcCCC--cccccHHHhhccceeeccHHHHHHHHhcChH
Confidence 999999999999999999988877777776 699999999999887 4788999999999999999999999999999
Q ss_pred HHHHHHHHhhhccCCCccchhhhHHHHHHHHHHHHhcCCCchhHHHHHHhCCchHHHHHHHhcCCcHHHHHHHHHHHhhh
Q 001733 750 PTILQTINLIQRSGTRTSRYASAYLEGLIGILVRFTTTLYEPQILFLARTHNFTSVFTELLMKTSCDEVQKLAAIGLENL 829 (1019)
Q Consensus 750 ~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~lt~~~~~~~~~~~~~~~g~i~~Lv~LL~~~~~~~vk~~AA~aL~nL 829 (1019)
|.|..++... ....+++.+++++.++|++ +++..+.++++|++|.|+.+|++ +++.+|++|||||+|+
T Consensus 324 ~~l~~ll~~s---------~~~~ikkEAcW~iSNItAG--~~~qiqaVida~l~p~Li~~l~~-~ef~~rKEAawaIsN~ 391 (514)
T KOG0166|consen 324 PVLSNLLSSS---------PKESIKKEACWTISNITAG--NQEQIQAVIDANLIPVLINLLQT-AEFDIRKEAAWAISNL 391 (514)
T ss_pred HHHHHHhccC---------cchhHHHHHHHHHHHhhcC--CHHHHHHHHHcccHHHHHHHHhc-cchHHHHHHHHHHHhh
Confidence 9999999631 2334778899999999997 99999999999999999999999 9999999999999999
Q ss_pred cccCCcCCCCCCcCCcccccccccCcccccCCCCCCCCCCCcccCCccccCccchhhhccchHHHHhhhccCchhhHHHH
Q 001733 830 SSESINLSKPPQIKSKKFMKFFSLPKSLSVGSSKKKSVSLCPVHRGACSSQNTFCLIDAKAVDRLLACLYHENVEVVEAA 909 (1019)
Q Consensus 830 s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~v~~~~cs~~~~~~Lv~~gai~~Lv~lL~~~d~~v~~~A 909 (1019)
+.++. +++..+|++.|+|+||+.+|...|..+..++
T Consensus 392 ts~g~--------------------------------------------~~qi~yLv~~giI~plcdlL~~~D~~ii~v~ 427 (514)
T KOG0166|consen 392 TSSGT--------------------------------------------PEQIKYLVEQGIIKPLCDLLTCPDVKIILVA 427 (514)
T ss_pred cccCC--------------------------------------------HHHHHHHHHcCCchhhhhcccCCChHHHHHH
Confidence 87651 2456789999999999999999999999999
Q ss_pred HHHHHhhhccCcch-----hhHHHHHHhccchHHHHHHHhhcChhhHHHHHHHHHHHHHhhC
Q 001733 910 LSALCTLLDEKVDV-----DKSVSMLSEVNAIQHVLNVVKEHRQEVLQQKSFWMIERFLVKG 966 (1019)
Q Consensus 910 l~AL~~L~~d~~~~-----~~~~~~i~~~~~i~~l~~lL~~~~~~~~~~~A~~aL~~i~~~~ 966 (1019)
+.+|.+++.-++.. +.....|+++||++++ +.|+.|.+++++++|..+|++||..+
T Consensus 428 Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldki-E~LQ~hen~~Iy~~A~~II~~yf~~e 488 (514)
T KOG0166|consen 428 LDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKI-ENLQSHENEEIYKKAYKIIDTYFSEE 488 (514)
T ss_pred HHHHHHHHHHHHHhccccccHHHHHHHHccChhHH-HHhhccccHHHHHHHHHHHHHhcCCC
Confidence 99999999755421 4567899999999998 66777999999999999999999874
No 4
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.4e-37 Score=321.08 Aligned_cols=412 Identities=16% Similarity=0.162 Sum_probs=340.3
Q ss_pred hHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCC--chHHHHhcCChHHHHHHhc-cCCHHHHHHHHHHHHHhccCccc-
Q 001733 435 GILVLITFKFNWSIDVFAAEIADQILRNLERNPD--NIKCMAENGLLEPLMHHLN-EGSEEIQMEMASYLGEIVLGHDS- 510 (1019)
Q Consensus 435 ~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~--n~~~i~~~G~i~~Lv~lL~-~~~~~~~~~aa~~L~~La~~~~~- 510 (1019)
-+|.|..-| .++|.+.+-.|..-++.+.+.+. -...++++|+||.+|++|. ....-.+.+|+|+|.|+++....
T Consensus 72 elp~lt~~l--~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~Q 149 (526)
T COG5064 72 ELPQLTQQL--FSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQ 149 (526)
T ss_pred hhHHHHHHH--hhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccc
Confidence 346666666 35677777777777777654333 4577889999999999995 45667889999999999985443
Q ss_pred -ccccccchHHHHHHHHhcCChHHHHHHHHHHHHhhcCCcc-hHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHH
Q 001733 511 -KINVPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPS-CKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILA 588 (1019)
Q Consensus 511 -~~~i~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~-~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~ 588 (1019)
+..+..+++|.+++||.+++..++++++|+|.|++.+++. |+.+.+.|++++|+.++.+... .....+++.|+|.
T Consensus 150 TkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~---~ismlRn~TWtLS 226 (526)
T COG5064 150 TKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAI---HISMLRNATWTLS 226 (526)
T ss_pred eEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccc---hHHHHHHhHHHHH
Confidence 3333447899999999999999999999999999999865 8999999999999999986542 1367789999999
Q ss_pred HHHhcCCCcccccccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhh
Q 001733 589 NILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVI 668 (1019)
Q Consensus 589 ~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL 668 (1019)
|||.+...+ |+.+ .+. .+++.|..|+
T Consensus 227 NlcRGknP~------------------------------P~w~------------------~is------qalpiL~KLi 252 (526)
T COG5064 227 NLCRGKNPP------------------------------PDWS------------------NIS------QALPILAKLI 252 (526)
T ss_pred HhhCCCCCC------------------------------CchH------------------HHH------HHHHHHHHHH
Confidence 998874322 1111 111 2466777888
Q ss_pred cCCCHHHHHHHHHHHHHhCcCCChhHHHHhhhcCCChhHhhcccCCCCcChHHHHHHHHHHhccCCCChhhHHHHHhCCC
Q 001733 669 NNPHDELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCPTETIHITEKQAVSAKFLAKLPHQNLTLNLALSARNV 748 (1019)
Q Consensus 669 ~~~~~~vr~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~LV~lL~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~l~~~g~ 748 (1019)
.+.++++...|+|++++|++...+.+...+. .|..+.||.+|.+.+ ..++.+|+..++|+..+++..++.+++.|+
T Consensus 253 ys~D~evlvDA~WAiSYlsDg~~E~i~avld--~g~~~RLvElLs~~s--a~iqtPalR~vGNIVTG~D~QTqviI~~G~ 328 (526)
T COG5064 253 YSRDPEVLVDACWAISYLSDGPNEKIQAVLD--VGIPGRLVELLSHES--AKIQTPALRSVGNIVTGSDDQTQVIINCGA 328 (526)
T ss_pred hhcCHHHHHHHHHHHHHhccCcHHHHHHHHh--cCCcHHHHHHhcCcc--ccccCHHHHhhcCeeecCccceehheeccc
Confidence 8999999999999999999987777777776 689999999998875 689999999999999999999999999999
Q ss_pred hHHHHHHHHhhhccCCCccchhhhHHHHHHHHHHHHhcCCCchhHHHHHHhCCchHHHHHHHhcCCcHHHHHHHHHHHhh
Q 001733 749 VPTILQTINLIQRSGTRTSRYASAYLEGLIGILVRFTTTLYEPQILFLARTHNFTSVFTELLMKTSCDEVQKLAAIGLEN 828 (1019)
Q Consensus 749 l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~lt~~~~~~~~~~~~~~~g~i~~Lv~LL~~~~~~~vk~~AA~aL~n 828 (1019)
++.+..+|.+. +..+...+++++.++|++ +.+..+++++++++|+|+.+|.+ .+..+|++||||+.|
T Consensus 329 L~a~~~lLs~~----------ke~irKEaCWTiSNITAG--nteqiqavid~nliPpLi~lls~-ae~k~kKEACWAisN 395 (526)
T COG5064 329 LKAFRSLLSSP----------KENIRKEACWTISNITAG--NTEQIQAVIDANLIPPLIHLLSS-AEYKIKKEACWAISN 395 (526)
T ss_pred HHHHHHHhcCh----------hhhhhhhhheeecccccC--CHHHHHHHHhcccchHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 99999999753 234667789999999997 99999999999999999999999 899999999999999
Q ss_pred hcccCCcCCCCCCcCCcccccccccCcccccCCCCCCCCCCCcccCCccccCccchhhhccchHHHHhhhccCchhhHHH
Q 001733 829 LSSESINLSKPPQIKSKKFMKFFSLPKSLSVGSSKKKSVSLCPVHRGACSSQNTFCLIDAKAVDRLLACLYHENVEVVEA 908 (1019)
Q Consensus 829 Ls~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~v~~~~cs~~~~~~Lv~~gai~~Lv~lL~~~d~~v~~~ 908 (1019)
.+.++.+.. ....+|++.|+|.||+.+|+..|..+.+.
T Consensus 396 atsgg~~~P------------------------------------------D~iryLv~qG~IkpLc~~L~~~dNkiiev 433 (526)
T COG5064 396 ATSGGLNRP------------------------------------------DIIRYLVSQGFIKPLCDLLDVVDNKIIEV 433 (526)
T ss_pred hhccccCCc------------------------------------------hHHHHHHHccchhHHHHHHhccCccchhh
Confidence 987763211 23457899999999999999999999999
Q ss_pred HHHHHHhhhccCc--------chhhHHHHHHhccchHHHHHHHhhcChhhHHHHHHHHHHHHHhh
Q 001733 909 ALSALCTLLDEKV--------DVDKSVSMLSEVNAIQHVLNVVKEHRQEVLQQKSFWMIERFLVK 965 (1019)
Q Consensus 909 Al~AL~~L~~d~~--------~~~~~~~~i~~~~~i~~l~~lL~~~~~~~~~~~A~~aL~~i~~~ 965 (1019)
+++|+.+++.-++ +......+++++||++.+..+-. +.+..++++|..+|++||..
T Consensus 434 ~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~-s~n~~iy~KAYsIIe~fFge 497 (526)
T COG5064 434 ALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQD-SVNRTIYDKAYSIIEKFFGE 497 (526)
T ss_pred hHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhh-ccccHHHHHHHHHHHHHccc
Confidence 9999999996544 23345667888999999988776 89999999999999999976
No 5
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-32 Score=287.51 Aligned_cols=475 Identities=15% Similarity=0.130 Sum_probs=384.3
Q ss_pred cCCHHHHHHHhcCCChhHHHHHHHHHHHhccChhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCch
Q 001733 391 TMDISILIKLLSSSHRPVRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNI 470 (1019)
Q Consensus 391 ~g~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~ 470 (1019)
++-+..+.-+-.+++...+..|+-+........ ...+ ....+.+..-+++ +.++.++..|..++.||+.+.+|+
T Consensus 46 ~~plraltvL~ySDnlnlqrsaalafAeitek~--vr~V--sres~epvl~llq--s~d~~Iq~aa~~alGnlAVn~enk 119 (550)
T KOG4224|consen 46 ASPLRALTVLKYSDNLNLQRSAALAFAEITEKG--VRRV--SRESNEPVLALLQ--SCDKCIQCAAGEALGNLAVNMENK 119 (550)
T ss_pred CCccchheeeeeccccccchHHHHHHHHHHHHH--HHHh--hhhhhhHHHHHHh--CcchhhhhhhhhhhccceeccCCc
Confidence 444555555555666666666665555554321 1222 2456677777774 678999999999999999999999
Q ss_pred HHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCccccccccc-chHHHHHHHHhcCChHHHHHHHHHHHHhhcCCc
Q 001733 471 KCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDSKINVPG-RAASTLIRMVHSGNSLTRRIAFKALMQISSHHP 549 (1019)
Q Consensus 471 ~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~i~~-~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~ 549 (1019)
..+++.+++++|+.-+..+..++|.+++.+++||+..+++|..|+. |++.+|.++-++.+..++.++.++|.|+....+
T Consensus 120 ~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~E 199 (550)
T KOG4224|consen 120 GLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRE 199 (550)
T ss_pred eEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhh
Confidence 9999999999999888888889999999999999999999999988 689999999999999999999999999999999
Q ss_pred chHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCcccccccccCcccchh--hhHHHHHHHHcCCCC
Q 001733 550 SCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSD--YVVYNIIYMLKNSTP 627 (1019)
Q Consensus 550 ~~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~--~~i~~Ll~LL~~~~~ 627 (1019)
+|+.++.+|++|.|++++.+.+ ..+|..|..++.|++-....+ +.+... .+|+.|++|+.. ++
T Consensus 200 nRr~LV~aG~lpvLVsll~s~d-----~dvqyycttaisnIaVd~~~R---------k~Laqaep~lv~~Lv~Lmd~-~s 264 (550)
T KOG4224|consen 200 NRRVLVHAGGLPVLVSLLKSGD-----LDVQYYCTTAISNIAVDRRAR---------KILAQAEPKLVPALVDLMDD-GS 264 (550)
T ss_pred hhhhhhccCCchhhhhhhccCC-----hhHHHHHHHHhhhhhhhHHHH---------HHHHhcccchHHHHHHHHhC-CC
Confidence 9999999999999999998653 589999999999998765443 233433 499999999999 99
Q ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHhCcCCChhHHHHhhhcCCChhH
Q 001733 628 DELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPEN 707 (1019)
Q Consensus 628 ~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~~vr~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~ 707 (1019)
+.+|..|.-+|.+++...+ .+..|.+.|++|.+++||+++.-......+.+++|++.+..++ .+...+|.+++
T Consensus 265 ~kvkcqA~lALrnlasdt~----Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe---~lI~dagfl~p 337 (550)
T KOG4224|consen 265 DKVKCQAGLALRNLASDTE----YQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNE---VLIADAGFLRP 337 (550)
T ss_pred hHHHHHHHHHHhhhcccch----hhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcc---cceecccchhH
Confidence 9999999999999998654 4667888999999999999999888888999999999776654 22333699999
Q ss_pred hhcccCCCCcChHHHHHHHHHHhccCCCChhhHHHHHhCCChHHHHHHHHhhhccCCCccchhhhHHHHHHHHHHHHhcC
Q 001733 708 LIQCPTETIHITEKQAVSAKFLAKLPHQNLTLNLALSARNVVPTILQTINLIQRSGTRTSRYASAYLEGLIGILVRFTTT 787 (1019)
Q Consensus 708 LV~lL~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~lt~~ 787 (1019)
||++|...+ +++.+..|+..|.||......+...+.+.|++|.+..++.+ +. -.+++...+++..++.
T Consensus 338 LVrlL~~~d-nEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD---~p-------vsvqseisac~a~Lal- 405 (550)
T KOG4224|consen 338 LVRLLRAGD-NEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLD---GP-------VSVQSEISACIAQLAL- 405 (550)
T ss_pred HHHHHhcCC-chhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhc---CC-------hhHHHHHHHHHHHHHh-
Confidence 999999998 68899999999999998788889999999999999999975 21 2356666677777774
Q ss_pred CCchhHHHHHHhCCchHHHHHHHhcCCcHHHHHHHHHHHhhhcccCCcCCCCCCcCCcccccccccCcccccCCCCCCCC
Q 001733 788 LYEPQILFLARTHNFTSVFTELLMKTSCDEVQKLAAIGLENLSSESINLSKPPQIKSKKFMKFFSLPKSLSVGSSKKKSV 867 (1019)
Q Consensus 788 ~~~~~~~~~~~~~g~i~~Lv~LL~~~~~~~vk~~AA~aL~nLs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 867 (1019)
+......+.+.|++|.|+.++.+ .+.+++-+||.||.||+++..+.+++. .+. ++ |
T Consensus 406 --~d~~k~~lld~gi~~iLIp~t~s-~s~Ev~gNaAaAL~Nlss~v~~Yarvi--------Eaw--------d~---P-- 461 (550)
T KOG4224|consen 406 --NDNDKEALLDSGIIPILIPWTGS-ESEEVRGNAAAALINLSSDVEHYARVI--------EAW--------DH---P-- 461 (550)
T ss_pred --ccccHHHHhhcCCcceeecccCc-cchhhcccHHHHHHhhhhhhHHHHHHH--------HHh--------cC---c--
Confidence 66778889999999999999999 899999999999999998775444332 111 10 0
Q ss_pred CCCcccCCccccCccchhhhccchHHHHhhhccCchhhHHHHHHHHHhhhccCcchhhHHHHHHhccchHHHHHHHhhcC
Q 001733 868 SLCPVHRGACSSQNTFCLIDAKAVDRLLACLYHENVEVVEAALSALCTLLDEKVDVDKSVSMLSEVNAIQHVLNVVKEHR 947 (1019)
Q Consensus 868 ~~c~v~~~~cs~~~~~~Lv~~gai~~Lv~lL~~~d~~v~~~Al~AL~~L~~d~~~~~~~~~~i~~~~~i~~l~~lL~~~~ 947 (1019)
..|.=..|+.+|.+.+.-++..|..++-.|+.|+. +++..+.+ +
T Consensus 462 -------------------~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h~---------------~~~~~~i~-~- 505 (550)
T KOG4224|consen 462 -------------------VQGIQGRLARFLASHELTFRHIARWTIQQLLEDHD---------------LPLTAFIQ-S- 505 (550)
T ss_pred -------------------chhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCC---------------ccHHHHHh-C-
Confidence 14556689999999999999999999988886543 45556665 3
Q ss_pred hhhHHHHHHHHHHHHHhh
Q 001733 948 QEVLQQKSFWMIERFLVK 965 (1019)
Q Consensus 948 ~~~~~~~A~~aL~~i~~~ 965 (1019)
++++-+-+-..++|..+.
T Consensus 506 ~ddii~~~~~~~~r~~~~ 523 (550)
T KOG4224|consen 506 SDDIIELLNDIVARDANN 523 (550)
T ss_pred chhHHHHHHHHHHHhccC
Confidence 455556666777777666
No 6
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.6e-31 Score=275.92 Aligned_cols=366 Identities=20% Similarity=0.211 Sum_probs=317.1
Q ss_pred CChHHHHHHhhcCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHhcCCChhHHHHHHHHHHHhccChhhhhhh
Q 001733 350 GVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSSHRPVRHESLLLLLELSSTRSLCEKI 429 (1019)
Q Consensus 350 g~i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~~~~~~~i 429 (1019)
..+.+...++.+.++.+|..|-.++.|++ -+.+||..|++-++++.|+.-+..+..++|.+|+.+|++|+..+++|..|
T Consensus 85 es~epvl~llqs~d~~Iq~aa~~alGnlA-Vn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~ki 163 (550)
T KOG4224|consen 85 ESNEPVLALLQSCDKCIQCAAGEALGNLA-VNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKI 163 (550)
T ss_pred hhhhHHHHHHhCcchhhhhhhhhhhccce-eccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhh
Confidence 34667778899999999999999999998 78899999999999999998887888899999999999999999999999
Q ss_pred hcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCcc
Q 001733 430 GSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHD 509 (1019)
Q Consensus 430 ~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~ 509 (1019)
.. .|++.+|.++- +++|..+++++.++|.|+....+||+.++.+|++|.||.++.+++.++|..+..++.+++.+..
T Consensus 164 A~-sGaL~pltrLa--kskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~ 240 (550)
T KOG4224|consen 164 AR-SGALEPLTRLA--KSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRR 240 (550)
T ss_pred hh-ccchhhhHhhc--ccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHH
Confidence 76 99999999965 5678889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccc-c--hHHHHHHHHhcCChHHHHHHHHHHHHhhcCCcchHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHH
Q 001733 510 SKINVPG-R--AASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAI 586 (1019)
Q Consensus 510 ~~~~i~~-~--~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~ 586 (1019)
.|..+++ + .+|.||++++++++++|-.|.-+|.+|+++.+.+..++++|.+|.++++|.++. ....-....+
T Consensus 241 ~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~-----~plilasVaC 315 (550)
T KOG4224|consen 241 ARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPM-----GPLILASVAC 315 (550)
T ss_pred HHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcc-----hhHHHHHHHH
Confidence 9988877 3 689999999999999999999999999999999999999999999999997653 1333444555
Q ss_pred HHHHHhcCCCcccccccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHH
Q 001733 587 LANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLE 666 (1019)
Q Consensus 587 L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~ 666 (1019)
+.|++-.+.+. ..+...|++.+|+.+|+...+.++|.+|..+|++|+.+.+ ..++.|++.|+++.|+.
T Consensus 316 IrnisihplNe---------~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse---~n~~~i~esgAi~kl~e 383 (550)
T KOG4224|consen 316 IRNISIHPLNE---------VLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSE---HNVSVIRESGAIPKLIE 383 (550)
T ss_pred HhhcccccCcc---------cceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhh---hhhHHHhhcCchHHHHH
Confidence 88887765433 4567899999999999985567799999999999998553 34779999999999999
Q ss_pred hhcCCCHHHHHHHHHHHHHhCcCCChhHHHHhhhcCCChhHhhcccCCCCcChHHHHHHHHHHhccCCCChhhHH
Q 001733 667 VINNPHDELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCPTETIHITEKQAVSAKFLAKLPHQNLTLNL 741 (1019)
Q Consensus 667 LL~~~~~~vr~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~LV~lL~~~~~~~~~~~~A~~~L~nL~~~~~~~~~ 741 (1019)
|+.+..-.+|.....++..|+.... ..+.+-. .|.++.|+.++.+.+ .+++..|+.+|.|+..+-.+..+
T Consensus 384 L~lD~pvsvqseisac~a~Lal~d~--~k~~lld-~gi~~iLIp~t~s~s--~Ev~gNaAaAL~Nlss~v~~Yar 453 (550)
T KOG4224|consen 384 LLLDGPVSVQSEISACIAQLALNDN--DKEALLD-SGIIPILIPWTGSES--EEVRGNAAAALINLSSDVEHYAR 453 (550)
T ss_pred HHhcCChhHHHHHHHHHHHHHhccc--cHHHHhh-cCCcceeecccCccc--hhhcccHHHHHHhhhhhhHHHHH
Confidence 9999998999888888888884322 2334443 599999999997765 69999999999999985445444
No 7
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=9.3e-27 Score=261.79 Aligned_cols=410 Identities=14% Similarity=0.120 Sum_probs=332.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhhcCCc--chHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCC
Q 001733 519 ASTLIRMVHSGNSLTRRIAFKALMQISSHHP--SCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLE 596 (1019)
Q Consensus 519 i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~--~~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~ 596 (1019)
.+.+++.+.++++..+-.+...+..|-+... ....++..|+||.+|+.|.... +..++..|+|+|.|++++...
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~----~~~lq~eAAWaLTnIAsgtse 143 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDD----NPTLQFEAAWALTNIASGTSE 143 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCC----ChhHHHHHHHHHHHHhcCchh
Confidence 6788888999888888888888888876554 3677777899999999997543 358899999999999998776
Q ss_pred cccccccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCCCH-HH
Q 001733 597 HHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHD-EL 675 (1019)
Q Consensus 597 ~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~-~v 675 (1019)
+. +.+...|.++.|++|+.+ +++.+++.|+|+|.+++.++. ..+..+.++|++++|+.++..++. .+
T Consensus 144 ~T--------~~vv~agavp~fi~Ll~s-~~~~v~eQavWALgNIagds~---~~Rd~vl~~g~l~pLl~~l~~~~~~~~ 211 (514)
T KOG0166|consen 144 QT--------KVVVDAGAVPIFIQLLSS-PSADVREQAVWALGNIAGDSP---DCRDYVLSCGALDPLLRLLNKSDKLSM 211 (514)
T ss_pred hc--------cccccCCchHHHHHHhcC-CcHHHHHHHHHHHhccccCCh---HHHHHHHhhcchHHHHHHhccccchHH
Confidence 65 445668899999999999 999999999999999998764 567889999999999999998876 78
Q ss_pred HHHHHHHHHHhCcCC-ChhHHHHhhhcCCChhHhhcccCCCCcChHHHHHHHHHHhccCCCChhhHHHHHhCCChHHHHH
Q 001733 676 AVAAIKLLTTLSPYL-GHTLVERLCKTRGQPENLIQCPTETIHITEKQAVSAKFLAKLPHQNLTLNLALSARNVVPTILQ 754 (1019)
Q Consensus 676 r~~A~~~L~~Ls~~~-~~~~~~~l~~~~g~i~~LV~lL~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~l~~~g~l~~Lv~ 754 (1019)
.+.++|+|+|||++. +..-.+.+. ..++.|..++.+.+ .++...|+|+|++|+.+..+..+.+++.|+++.|+.
T Consensus 212 lRn~tW~LsNlcrgk~P~P~~~~v~---~iLp~L~~ll~~~D--~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~ 286 (514)
T KOG0166|consen 212 LRNATWTLSNLCRGKNPSPPFDVVA---PILPALLRLLHSTD--EEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVD 286 (514)
T ss_pred HHHHHHHHHHHHcCCCCCCcHHHHH---HHHHHHHHHHhcCC--HHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHH
Confidence 899999999999765 333333343 57899999998876 699999999999999888888899999999999999
Q ss_pred HHHhhhccCCCccchhhhHHHHHHHHHHHHhcCCCchhHHHHHHhCCchHHHHHHHhcCCcHHHHHHHHHHHhhhcccCC
Q 001733 755 TINLIQRSGTRTSRYASAYLEGLIGILVRFTTTLYEPQILFLARTHNFTSVFTELLMKTSCDEVQKLAAIGLENLSSESI 834 (1019)
Q Consensus 755 lL~~~~~~~~~~~~~~~~~~e~a~~aL~~lt~~~~~~~~~~~~~~~g~i~~Lv~LL~~~~~~~vk~~AA~aL~nLs~~~~ 834 (1019)
+|... ...+.-.++.++.+++.+ +....+.+++.|++|.|..+|..+....+|++|||.|.|++.+..
T Consensus 287 lL~~~----------~~~v~~PaLRaiGNIvtG--~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~ 354 (514)
T KOG0166|consen 287 LLGHS----------SPKVVTPALRAIGNIVTG--SDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQ 354 (514)
T ss_pred HHcCC----------CcccccHHHhhccceeec--cHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCH
Confidence 99742 122345678888888876 788889999999999999999963566799999999999987552
Q ss_pred cCCCCCCcCCcccccccccCcccccCCCCCCCCCCCcccCCccccCccchhhhccchHHHHhhhccCchhhHHHHHHHHH
Q 001733 835 NLSKPPQIKSKKFMKFFSLPKSLSVGSSKKKSVSLCPVHRGACSSQNTFCLIDAKAVDRLLACLYHENVEVVEAALSALC 914 (1019)
Q Consensus 835 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~v~~~~cs~~~~~~Lv~~gai~~Lv~lL~~~d~~v~~~Al~AL~ 914 (1019)
.+..+++++|.+++|+.+|+..+-+++..|+.|++
T Consensus 355 ---------------------------------------------~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIs 389 (514)
T KOG0166|consen 355 ---------------------------------------------EQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAIS 389 (514)
T ss_pred ---------------------------------------------HHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHH
Confidence 23345678999999999999999999999999999
Q ss_pred hhhccCcchhhHHHHHHhccchHHHHHHHhhcChhhHHHHHHHHHHHHHhhCCcccc---c---cccccccchHHHHHHh
Q 001733 915 TLLDEKVDVDKSVSMLSEVNAIQHVLNVVKEHRQEVLQQKSFWMIERFLVKGGNKQA---S---DISQDRLLPATLVSAF 988 (1019)
Q Consensus 915 ~L~~d~~~~~~~~~~i~~~~~i~~l~~lL~~~~~~~~~~~A~~aL~~i~~~~~~~~~---~---~~~~~~~~~~~Lv~ll 988 (1019)
|+...+. .+....|.+.|.|+|+..+|. -.+..+-..++.+|+.++..+..... . .+-..+.+...+-.+-
T Consensus 390 N~ts~g~--~~qi~yLv~~giI~plcdlL~-~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ 466 (514)
T KOG0166|consen 390 NLTSSGT--PEQIKYLVEQGIIKPLCDLLT-CPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQ 466 (514)
T ss_pred hhcccCC--HHHHHHHHHcCCchhhhhccc-CCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhh
Confidence 9998875 567889999999999999997 78999999999999999998322111 1 1111222232344444
Q ss_pred hcCCchhhHHHHHHHHHhccC
Q 001733 989 HHGDVNTRQMAEKILRHLNKM 1009 (1019)
Q Consensus 989 ~~~~~~~~~~Aa~~L~~L~~~ 1009 (1019)
.|.+..+...|-+++.+-.-.
T Consensus 467 ~hen~~Iy~~A~~II~~yf~~ 487 (514)
T KOG0166|consen 467 SHENEEIYKKAYKIIDTYFSE 487 (514)
T ss_pred ccccHHHHHHHHHHHHHhcCC
Confidence 455568888888887765443
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.95 E-value=1.7e-26 Score=239.12 Aligned_cols=410 Identities=13% Similarity=0.073 Sum_probs=329.8
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHHHHhhcC--CcchHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCC
Q 001733 518 AASTLIRMVHSGNSLTRRIAFKALMQISSH--HPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGL 595 (1019)
Q Consensus 518 ~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~--~~~~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~ 595 (1019)
-+|.|.+-|.+.+.+.+..|..-...+-+. ++..+.++++|+||.++++|.+.. +.-.+-.|+|+|.|++++..
T Consensus 72 elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q----~~mlqfEAaWalTNiaSGtt 147 (526)
T COG5064 72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQ----RDMLQFEAAWALTNIASGTT 147 (526)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcc----hhHHHHHHHHHHhhhccCcc
Confidence 468888888877777777777666665443 345889999999999999997654 34678899999999999887
Q ss_pred CcccccccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCCCH--
Q 001733 596 EHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHD-- 673 (1019)
Q Consensus 596 ~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~-- 673 (1019)
.+..+ +...+.|+.+++||.+ ++.++++.++|+|.+++.++.. .+..+.++|++.+++.++.++..
T Consensus 148 ~QTkv--------Vvd~~AVPlfiqlL~s-~~~~V~eQavWALGNiAGDS~~---~RD~vL~~galeplL~ll~ss~~~i 215 (526)
T COG5064 148 QQTKV--------VVDAGAVPLFIQLLSS-TEDDVREQAVWALGNIAGDSEG---CRDYVLQCGALEPLLGLLLSSAIHI 215 (526)
T ss_pred cceEE--------EEeCCchHHHHHHHcC-chHHHHHHHHHHhccccCCchh---HHHHHHhcCchHHHHHHHHhccchH
Confidence 76544 4557889999999999 9999999999999999987754 57788999999999999987655
Q ss_pred HHHHHHHHHHHHhCcCCC-hhHHHHhhhcCCChhHhhcccCCCCcChHHHHHHHHHHhccCCCChhhHHHHHhCCChHHH
Q 001733 674 ELAVAAIKLLTTLSPYLG-HTLVERLCKTRGQPENLIQCPTETIHITEKQAVSAKFLAKLPHQNLTLNLALSARNVVPTI 752 (1019)
Q Consensus 674 ~vr~~A~~~L~~Ls~~~~-~~~~~~l~~~~g~i~~LV~lL~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~l~~~g~l~~L 752 (1019)
.+.+++.|+|+|||++.. ..-...+. ..+|.|-+++..-+ +++...|+|+|+.|..+.-+..+.+++.|.-+.|
T Consensus 216 smlRn~TWtLSNlcRGknP~P~w~~is---qalpiL~KLiys~D--~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RL 290 (526)
T COG5064 216 SMLRNATWTLSNLCRGKNPPPDWSNIS---QALPILAKLIYSRD--PEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRL 290 (526)
T ss_pred HHHHHhHHHHHHhhCCCCCCCchHHHH---HHHHHHHHHHhhcC--HHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHH
Confidence 788999999999995432 22233333 46888999987776 6999999999999998888888999999999999
Q ss_pred HHHHHhhhccCCCccchhhhHHHHHHHHHHHHhcCCCchhHHHHHHhCCchHHHHHHHhcCCcHHHHHHHHHHHhhhccc
Q 001733 753 LQTINLIQRSGTRTSRYASAYLEGLIGILVRFTTTLYEPQILFLARTHNFTSVFTELLMKTSCDEVQKLAAIGLENLSSE 832 (1019)
Q Consensus 753 v~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~lt~~~~~~~~~~~~~~~g~i~~Lv~LL~~~~~~~vk~~AA~aL~nLs~~ 832 (1019)
+.+|.+ ....++..++..+.++..+ +....+.++..|+++.|..+|++ .-+.+|++|||.|.|++.+
T Consensus 291 vElLs~----------~sa~iqtPalR~vGNIVTG--~D~QTqviI~~G~L~a~~~lLs~-~ke~irKEaCWTiSNITAG 357 (526)
T COG5064 291 VELLSH----------ESAKIQTPALRSVGNIVTG--SDDQTQVIINCGALKAFRSLLSS-PKENIRKEACWTISNITAG 357 (526)
T ss_pred HHHhcC----------ccccccCHHHHhhcCeeec--CccceehheecccHHHHHHHhcC-hhhhhhhhhheeecccccC
Confidence 999964 1233456677777788766 56666788899999999999999 7789999999999999765
Q ss_pred CCcCCCCCCcCCcccccccccCcccccCCCCCCCCCCCcccCCccccCccchhhhccchHHHHhhhccCchhhHHHHHHH
Q 001733 833 SINLSKPPQIKSKKFMKFFSLPKSLSVGSSKKKSVSLCPVHRGACSSQNTFCLIDAKAVDRLLACLYHENVEVVEAALSA 912 (1019)
Q Consensus 833 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~v~~~~cs~~~~~~Lv~~gai~~Lv~lL~~~d~~v~~~Al~A 912 (1019)
.. .+..+.++++.||||+.+|.+.+-.++..|+.|
T Consensus 358 nt---------------------------------------------eqiqavid~nliPpLi~lls~ae~k~kKEACWA 392 (526)
T COG5064 358 NT---------------------------------------------EQIQAVIDANLIPPLIHLLSSAEYKIKKEACWA 392 (526)
T ss_pred CH---------------------------------------------HHHHHHHhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 41 233456789999999999999999999999999
Q ss_pred HHhhhccCcchhhHHHHHHhccchHHHHHHHhhcChhhHHHHHHHHHHHHHhhCCccc-cc--------cccccccchHH
Q 001733 913 LCTLLDEKVDVDKSVSMLSEVNAIQHVLNVVKEHRQEVLQQKSFWMIERFLVKGGNKQ-AS--------DISQDRLLPAT 983 (1019)
Q Consensus 913 L~~L~~d~~~~~~~~~~i~~~~~i~~l~~lL~~~~~~~~~~~A~~aL~~i~~~~~~~~-~~--------~~~~~~~~~~~ 983 (1019)
+.|....+-........+.+.|.|+||-.+|. -.+..+-+-++.+++.+++.+..+- .. .|...|++...
T Consensus 393 isNatsgg~~~PD~iryLv~qG~IkpLc~~L~-~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~ 471 (526)
T COG5064 393 ISNATSGGLNRPDIIRYLVSQGFIKPLCDLLD-VVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDA 471 (526)
T ss_pred HHhhhccccCCchHHHHHHHccchhHHHHHHh-ccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHH
Confidence 99999877666677889999999999999997 6677788999999999998732111 10 22333555566
Q ss_pred HHHHhhcCCchhhHHHHHHHHHhc
Q 001733 984 LVSAFHHGDVNTRQMAEKILRHLN 1007 (1019)
Q Consensus 984 Lv~ll~~~~~~~~~~Aa~~L~~L~ 1007 (1019)
+-++-.+++..+-..|=+++..-.
T Consensus 472 I~~~Q~s~n~~iy~KAYsIIe~fF 495 (526)
T COG5064 472 IHGLQDSVNRTIYDKAYSIIEKFF 495 (526)
T ss_pred HHHhhhccccHHHHHHHHHHHHHc
Confidence 777788888899888888887655
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.94 E-value=1.1e-23 Score=250.18 Aligned_cols=507 Identities=16% Similarity=0.170 Sum_probs=376.5
Q ss_pred HHHHHHHHHHHHHHhcccccchHHHhcCChHHHHHHhhc---CCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHH
Q 001733 323 RMVLEAIKDLQTVCQRKQYNKVQVRNVGVLPLLTKLLEY---KDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIK 399 (1019)
Q Consensus 323 ~~~~~Al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~s---~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~ 399 (1019)
.++.++...|..||+..+.-...+.+.-++..|.+.|.. .+.+...+-+.+...+| ...+.-..+.....-...++
T Consensus 137 ~ek~~~~~~il~La~~~~NL~~l~~ne~l~~aL~RvLred~~ks~~l~tnI~~iF~~fS-~f~~fH~~l~~~kiG~l~m~ 215 (708)
T PF05804_consen 137 PEKIRGTSLILQLARNPENLEELVQNETLMSALARVLREDWKKSVELATNIIYIFFCFS-NFSQFHPILAHYKIGSLCME 215 (708)
T ss_pred HHHHHHHHHHHHHhCCcchHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-hHHHHHHHHHhccHHHHHHH
Confidence 346677778888888755555566666778888888864 35666667777777776 44455555655443333445
Q ss_pred HhcCCChhHHHHHHHH--HHH---hcc-ChhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHH
Q 001733 400 LLSSSHRPVRHESLLL--LLE---LSS-TRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCM 473 (1019)
Q Consensus 400 lL~~~~~~~r~~Aa~~--L~~---Ls~-~~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i 473 (1019)
++.. +++..-.+. +.. .+. .+..+... ....+.+-.++. ......+.+...|.||+.+..+..+|
T Consensus 216 iie~---Elkr~~~w~~~l~~~~~~~~~~~~~~~~~---~~~~kk~~~l~~---kQeqLlrv~~~lLlNLAed~~ve~kM 286 (708)
T PF05804_consen 216 IIEH---ELKRHDLWQEELRKKKKAAEEKPEAKKDY---EKELKKLQTLIR---KQEQLLRVAFYLLLNLAEDPRVELKM 286 (708)
T ss_pred HHHH---HHHHHHHHHHHHHhhhhhhccchhhhhhH---HHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 5532 233222211 111 111 11111111 112233333432 23355678889999999999999999
Q ss_pred HhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCccccccccc-chHHHHHHHHhcCChHHHHHHHHHHHHhhcCCcchH
Q 001733 474 AENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDSKINVPG-RAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCK 552 (1019)
Q Consensus 474 ~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~i~~-~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~~~ 552 (1019)
.+.|+|+.|+++|.+++.++...+++.|.+|+...++|..+.+ +++++|++++.+++..+...++++|.|||.+++.|.
T Consensus 287 ~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~ 366 (708)
T PF05804_consen 287 VNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRS 366 (708)
T ss_pred HhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHH
Confidence 9999999999999999999999999999999999999999988 579999999999999999999999999999999999
Q ss_pred HHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCcccccccccCcccchhhhHHHHHHHHcCCCCHHHHH
Q 001733 553 ILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNV 632 (1019)
Q Consensus 553 ~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~ 632 (1019)
.|++.|++|.|+.+|... ..+..|..+|.+|+.....+ ..+...++++.+++++-..+++.++.
T Consensus 367 ~mV~~GlIPkLv~LL~d~-------~~~~val~iLy~LS~dd~~r---------~~f~~TdcIp~L~~~Ll~~~~~~v~~ 430 (708)
T PF05804_consen 367 QMVSLGLIPKLVELLKDP-------NFREVALKILYNLSMDDEAR---------SMFAYTDCIPQLMQMLLENSEEEVQL 430 (708)
T ss_pred HHHHCCCcHHHHHHhCCC-------chHHHHHHHHHHhccCHhhH---------HHHhhcchHHHHHHHHHhCCCccccH
Confidence 999999999999999743 45678999999999876544 23455678999999877646777888
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHhCcCCChhHHHHhhhcCCChhHhhccc
Q 001733 633 HLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCP 712 (1019)
Q Consensus 633 ~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~~vr~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~LV~lL 712 (1019)
.++..+.+++.+++. .+.|.+.+|++.|+...-...+.+ ..++++|+|.+.+.. ...+. +.+..|++++
T Consensus 431 eliaL~iNLa~~~rn----aqlm~~g~gL~~L~~ra~~~~D~l---LlKlIRNiS~h~~~~-k~~f~---~~i~~L~~~v 499 (708)
T PF05804_consen 431 ELIALLINLALNKRN----AQLMCEGNGLQSLMKRALKTRDPL---LLKLIRNISQHDGPL-KELFV---DFIGDLAKIV 499 (708)
T ss_pred HHHHHHHHHhcCHHH----HHHHHhcCcHHHHHHHHHhcccHH---HHHHHHHHHhcCchH-HHHHH---HHHHHHHHHh
Confidence 889999999998765 356778899999996654443322 346999999887543 33343 5789999999
Q ss_pred CCCCcChHHHHHHHHHHhccCCCChhhHHHHHhCCChHHHHHHHHhhhccCCCccchhhhHHHHHHHHHHHHhcCCCchh
Q 001733 713 TETIHITEKQAVSAKFLAKLPHQNLTLNLALSARNVVPTILQTINLIQRSGTRTSRYASAYLEGLIGILVRFTTTLYEPQ 792 (1019)
Q Consensus 713 ~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~lt~~~~~~~ 792 (1019)
..++ +++....++|+|+||+..+....+.+.+.+.+|.|.++|.. +.. ...++-.++-.+..++. |+.
T Consensus 500 ~~~~-~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~---g~~-----~dDl~LE~Vi~~gtla~---d~~ 567 (708)
T PF05804_consen 500 SSGD-SEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKP---GAS-----EDDLLLEVVILLGTLAS---DPE 567 (708)
T ss_pred hcCC-cHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCC---CCC-----ChHHHHHHHHHHHHHHC---CHH
Confidence 8887 68899999999999998777777788889999999999963 211 22344445556666664 999
Q ss_pred HHHHHHhCCchHHHHHHHhcC-CcHHHHHHHHHHHhhhcccCCcCCCCCCcCCcccccccccCcccccCCCCCCCCCCCc
Q 001733 793 ILFLARTHNFTSVFTELLMKT-SCDEVQKLAAIGLENLSSESINLSKPPQIKSKKFMKFFSLPKSLSVGSSKKKSVSLCP 871 (1019)
Q Consensus 793 ~~~~~~~~g~i~~Lv~LL~~~-~~~~vk~~AA~aL~nLs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 871 (1019)
....+.+.|+++.|+.+|+.. .+++.......++.+|-.+... |
T Consensus 568 ~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~t-------------------r---------------- 612 (708)
T PF05804_consen 568 CAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEET-------------------R---------------- 612 (708)
T ss_pred HHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHH-------------------H----------------
Confidence 999999999999999999985 5678888888888887654310 0
Q ss_pred ccCCccccCccchhhhccchHHHHhhhccCchhhHHHHHHHHHhhhccCcch
Q 001733 872 VHRGACSSQNTFCLIDAKAVDRLLACLYHENVEVVEAALSALCTLLDEKVDV 923 (1019)
Q Consensus 872 v~~~~cs~~~~~~Lv~~gai~~Lv~lL~~~d~~v~~~Al~AL~~L~~d~~~~ 923 (1019)
.+-+-+.+++.-|++++++.|+.|+..|-.+|-.++..+..|
T Consensus 613 ----------~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w 654 (708)
T PF05804_consen 613 ----------EVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEW 654 (708)
T ss_pred ----------HHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHH
Confidence 011124678999999999999999999999999888555433
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.90 E-value=2.9e-21 Score=229.74 Aligned_cols=393 Identities=15% Similarity=0.151 Sum_probs=314.8
Q ss_pred CHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHhcCCChhHHHHHHHHHHHhccChhhhhhhhcccchHHHHHHh
Q 001733 363 DRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSSHRPVRHESLLLLLELSSTRSLCEKIGSIPGGILVLITF 442 (1019)
Q Consensus 363 ~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~~~~~~~i~~~~g~I~~LV~l 442 (1019)
.......++..|.|++ .+..++..+.+.|.|+.|+++|.+++.++...++.+|.+||...+++..++. .|+|++|+++
T Consensus 262 QeqLlrv~~~lLlNLA-ed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~-~giV~kL~kL 339 (708)
T PF05804_consen 262 QEQLLRVAFYLLLNLA-EDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAE-SGIVEKLLKL 339 (708)
T ss_pred HHHHHHHHHHHHHHHh-cChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHH-cCCHHHHHHH
Confidence 3455667889999998 8889999999999999999999999999999999999999999999999986 8999999999
Q ss_pred hhcCCCChHHHHHHHHHHHHhcCCCCchHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCccccccccc-chHHH
Q 001733 443 KFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDSKINVPG-RAAST 521 (1019)
Q Consensus 443 L~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~i~~-~~i~~ 521 (1019)
+. +++.+....++.+|+|||.++++|..|++.|+||.|+.+|.++ ..+..+..+|.+|+.++++|..+.. +++|.
T Consensus 340 l~--s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~TdcIp~ 415 (708)
T PF05804_consen 340 LP--SENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYTDCIPQ 415 (708)
T ss_pred hc--CCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhcchHHH
Confidence 94 6678899999999999999999999999999999999999864 4566789999999999999998876 58999
Q ss_pred HHHHHhc-CChHHHHHHHHHHHHhhcCCcchHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCcccc
Q 001733 522 LIRMVHS-GNSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSL 600 (1019)
Q Consensus 522 Lv~lL~~-~~~~~~~~A~~aL~~Ls~~~~~~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~ 600 (1019)
+++++-+ +++.+...++..+.||+.+..+.+.+.+.|+++.|++...... + .....++.|++......+
T Consensus 416 L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~-----D---~lLlKlIRNiS~h~~~~k-- 485 (708)
T PF05804_consen 416 LMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTR-----D---PLLLKLIRNISQHDGPLK-- 485 (708)
T ss_pred HHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcc-----c---HHHHHHHHHHHhcCchHH--
Confidence 9997766 4566777789999999999999999999999999998765432 1 234467999988763221
Q ss_pred cccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCC--CHHHHHH
Q 001733 601 QVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNP--HDELAVA 678 (1019)
Q Consensus 601 ~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~--~~~vr~~ 678 (1019)
.+ -.+.|..|+..+....+++....++++|.+|+..... ....+.+.+.++-|..+|..+ .+++...
T Consensus 486 -------~~-f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld---~~~ll~~~~llp~L~~~L~~g~~~dDl~LE 554 (708)
T PF05804_consen 486 -------EL-FVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLD---WAQLLQEYNLLPWLKDLLKPGASEDDLLLE 554 (708)
T ss_pred -------HH-HHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcC---HHHHHHhCCHHHHHHHHhCCCCCChHHHHH
Confidence 11 2468888899988766789999999999999875433 334666789999999999754 3578889
Q ss_pred HHHHHHHhCcCCChhHHHHhhhcCCChhHhhcccCCCCcChHHHHHHHHHHhccCCCChhhHHHH-HhCCChHHHHHHHH
Q 001733 679 AIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCPTETIHITEKQAVSAKFLAKLPHQNLTLNLAL-SARNVVPTILQTIN 757 (1019)
Q Consensus 679 A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~LV~lL~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~l-~~~g~l~~Lv~lL~ 757 (1019)
++.+++.++. +......+.+ .|.++.|+.+|.....+++.....+.++..+..+... ++.+ .+.+++..++.+++
T Consensus 555 ~Vi~~gtla~--d~~~A~lL~~-sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~t-r~~ll~~~~~~~ylidL~~ 630 (708)
T PF05804_consen 555 VVILLGTLAS--DPECAPLLAK-SGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEET-REVLLKETEIPAYLIDLMH 630 (708)
T ss_pred HHHHHHHHHC--CHHHHHHHHh-CChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHH-HHHHHhccchHHHHHHHhc
Confidence 9999999985 3344455554 4999999999988776678888999999999886554 4555 45788888999997
Q ss_pred hhhccCCCccchhhhHHHHHHHHHHHHhcCCCchhHHHHHH
Q 001733 758 LIQRSGTRTSRYASAYLEGLIGILVRFTTTLYEPQILFLAR 798 (1019)
Q Consensus 758 ~~~~~~~~~~~~~~~~~e~a~~aL~~lt~~~~~~~~~~~~~ 798 (1019)
+. ......+.+.++.++..+ |++|...++
T Consensus 631 d~-------N~~ir~~~d~~Ldii~e~-----d~~w~~ri~ 659 (708)
T PF05804_consen 631 DK-------NAEIRKVCDNALDIIAEY-----DEEWAERIR 659 (708)
T ss_pred CC-------CHHHHHHHHHHHHHHHHh-----CHHHHHHhh
Confidence 51 112233344444444332 677766665
No 11
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.88 E-value=9.5e-21 Score=219.40 Aligned_cols=378 Identities=17% Similarity=0.125 Sum_probs=300.7
Q ss_pred CCHHHHHHHhcCCChhHHHHHHHHHHHhccCh-hhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcC---CC
Q 001733 392 MDISILIKLLSSSHRPVRHESLLLLLELSSTR-SLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLER---NP 467 (1019)
Q Consensus 392 g~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~~-~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~---~~ 467 (1019)
--+|..+.+|.+.++.+|.+|+..|.+++..+ +.|..+ ...|+|+.||.+|. +...++++.|+++|+||.. .+
T Consensus 233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~v-rqlggI~kLv~Ll~--~~~~evq~~acgaLRNLvf~~~~~ 309 (717)
T KOG1048|consen 233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRV-RQLGGIPKLVALLD--HRNDEVQRQACGALRNLVFGKSTD 309 (717)
T ss_pred cccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHH-HHhccHHHHHHHhc--CCcHHHHHHHHHHHHhhhcccCCc
Confidence 35788899999999999999999999999966 556655 45999999999994 6778999999999999983 44
Q ss_pred CchHHHHhcCChHHHHHHhcc-CCHHHHHHHHHHHHHhccCcccccccccchHHHHHHHHhcC--------------ChH
Q 001733 468 DNIKCMAENGLLEPLMHHLNE-GSEEIQMEMASYLGEIVLGHDSKINVPGRAASTLIRMVHSG--------------NSL 532 (1019)
Q Consensus 468 ~n~~~i~~~G~i~~Lv~lL~~-~~~~~~~~aa~~L~~La~~~~~~~~i~~~~i~~Lv~lL~~~--------------~~~ 532 (1019)
+|+..|.+.++|+.++++|+. ++.++++..+.+|+||++++..|..|...++..|..-+-.+ ...
T Consensus 310 ~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~ 389 (717)
T KOG1048|consen 310 SNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDST 389 (717)
T ss_pred ccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccce
Confidence 699999999999999999985 78999999999999999999999999888888887655331 134
Q ss_pred HHHHHHHHHHHhhcCC-cchHHHHH-cCcHHHHHHHHhhh-ccCCCChhHHHHHHHHHHHHHhcCC--------------
Q 001733 533 TRRIAFKALMQISSHH-PSCKILVE-AGIVQVMAEEMFIR-IIHNEPMNSKEEAAAILANILESGL-------------- 595 (1019)
Q Consensus 533 ~~~~A~~aL~~Ls~~~-~~~~~l~~-~G~v~~Lv~lL~~~-~~~~~~~~~~~~A~~~L~~L~~~~~-------------- 595 (1019)
+-.+++++|.|+++.. +.|+.|.+ .|.|..|+..+... +.+..+....|+|.++|.||.-.-.
T Consensus 390 vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~ 469 (717)
T KOG1048|consen 390 VFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANI 469 (717)
T ss_pred eeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcc
Confidence 6678999999999855 56888887 78999999988732 2222234677999999999964321
Q ss_pred -------C------------c-----------ccccccccC-cccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC
Q 001733 596 -------E------------H-----------HSLQVNSHG-HTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKS 644 (1019)
Q Consensus 596 -------~------------~-----------~~~~v~~~g-~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~La~~ 644 (1019)
. + ...-.+++| ..+....+|...+.||..+..+.+.+.++.+|-+++..
T Consensus 470 ~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~ 549 (717)
T KOG1048|consen 470 ARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAG 549 (717)
T ss_pred cccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhcc
Confidence 0 0 000011222 44677788888888888768899999999999999987
Q ss_pred CCchHHHH-HHH-HHcCChHHHHHhhcCCCHHHHHHHHHHHHHhCcCCChhHHHHhhhcCCChhHhhcccCCCCc----C
Q 001733 645 PKPMATIV-SVI-KETEASYSLLEVINNPHDELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCPTETIH----I 718 (1019)
Q Consensus 645 ~~~~~~i~-~~i-~~~g~i~~Lv~LL~~~~~~vr~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~LV~lL~~~~~----~ 718 (1019)
.......+ ..+ ++..+.+.|++||+.+++.+...++.+|+||+.+. ...+.+. .++++.||+.|..+.+ +
T Consensus 550 ~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~--rnk~lig--k~a~~~lv~~Lp~~~~~~~~s 625 (717)
T KOG1048|consen 550 LWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI--RNKELIG--KYAIPDLVRCLPGSGPSTSLS 625 (717)
T ss_pred CCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc--hhhhhhh--cchHHHHHHhCcCCCCCcCch
Confidence 76544444 444 88999999999999999999999999999999743 3345555 4799999999987763 3
Q ss_pred hHHHHHHHHHHhccCCCChhhHHHHHhCCChHHHHHHHHhhhccCCCccchhhhHHHHHHHHHHHHh
Q 001733 719 TEKQAVSAKFLAKLPHQNLTLNLALSARNVVPTILQTINLIQRSGTRTSRYASAYLEGLIGILVRFT 785 (1019)
Q Consensus 719 ~~~~~~A~~~L~nL~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~lt 785 (1019)
++...+++.+|.|+...+..+.+.+.+.++++.|+.+... ....+..+.+..+|..+.
T Consensus 626 edtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s---------~~S~k~~kaAs~vL~~lW 683 (717)
T KOG1048|consen 626 EDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKS---------QHSPKEFKAASSVLDVLW 683 (717)
T ss_pred HHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcc---------cCCHHHHHHHHHHHHHHH
Confidence 6778889999999998899999999999999999999753 123455666666665554
No 12
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.81 E-value=1.5e-20 Score=160.67 Aligned_cols=72 Identities=44% Similarity=0.725 Sum_probs=62.9
Q ss_pred CCCccccccCcccCCCceecCCCccccHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCccCHhHHHHHHHHHHHch
Q 001733 230 LYETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVALKTTIEEWKDRND 305 (1019)
Q Consensus 230 ~~~~~~Cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~~~~l~pn~~Lr~~I~~w~~~~~ 305 (1019)
+|++|+||||+++|+|||++++||||||.+|++|+.. ++.+||+|+++++..+++||..||+.|++|+.+|.
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~----~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~ 72 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQ----NGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENK 72 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCT----TSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCT
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHc----CCCCCCCCCCcCCcccceECHHHHHHHHHHHHHcc
Confidence 5899999999999999999999999999999999998 67899999999999999999999999999999874
No 13
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.74 E-value=5.1e-17 Score=188.68 Aligned_cols=406 Identities=18% Similarity=0.160 Sum_probs=292.3
Q ss_pred cCCHHHHHHHHHHHHHHHhcccccchHHHhcCChHHHHHHhhcCCHHHHHHHHHHHHhhccCChh--HHHHHHhcCCHHH
Q 001733 319 AGSDRMVLEAIKDLQTVCQRKQYNKVQVRNVGVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDE--GKEMIAETMDISI 396 (1019)
Q Consensus 319 ~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~--~k~~I~~~g~i~~ 396 (1019)
+..+..+..|...|+.+|..+..-|..+.+.|+||.||.+|.+.+.++|.+|+.+|+||...... ||..|.+.++|+.
T Consensus 244 ~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~ 323 (717)
T KOG1048|consen 244 SQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPT 323 (717)
T ss_pred ccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHH
Confidence 45566788899999999999999999999999999999999999999999999999999865554 9999999999999
Q ss_pred HHHHhcC-CChhHHHHHHHHHHHhccChhhhhhhhcccchHHHHHHhhhcCC--------C----ChHHHHHHHHHHHHh
Q 001733 397 LIKLLSS-SHRPVRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKFNWS--------I----DVFAAEIADQILRNL 463 (1019)
Q Consensus 397 Lv~lL~~-~~~~~r~~Aa~~L~~Ls~~~~~~~~i~~~~g~I~~LV~lL~~~~--------~----~~~~~~~A~~aL~nL 463 (1019)
++++|+. +|.+++++.+.+|+|||..+..|..|. ..++..|..-+-.+. . +.++..++.++|+|+
T Consensus 324 l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii--~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNl 401 (717)
T KOG1048|consen 324 LVRLLRHTQDDEVRELITGILWNLSSNDALKMLII--TSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNL 401 (717)
T ss_pred HHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHH--HHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccc
Confidence 9999987 889999999999999999998888886 467777766542111 1 356788999999999
Q ss_pred cC-CCCchHHHHhc-CChHHHHHHhcc------CCHHHHHHHHHHHHHhccCcccccccccchHHHHH---HHHhcCChH
Q 001733 464 ER-NPDNIKCMAEN-GLLEPLMHHLNE------GSEEIQMEMASYLGEIVLGHDSKINVPGRAASTLI---RMVHSGNSL 532 (1019)
Q Consensus 464 s~-~~~n~~~i~~~-G~i~~Lv~lL~~------~~~~~~~~aa~~L~~La~~~~~~~~i~~~~i~~Lv---~lL~~~~~~ 532 (1019)
+. ..+.+.+|.+. |.|..|+..+.. .+...+++|+.+|.||+..-+ .++-...-+.+- .....+.+.
T Consensus 402 Ss~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~--~Evp~~~~~~~~~~~~~~~~~~~~ 479 (717)
T KOG1048|consen 402 SSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLE--AEVPPKYRQVLANIARLPGVGPPA 479 (717)
T ss_pred cchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhh--hhcCHhhhhHhhcccccccCCCcc
Confidence 86 77789999886 999999998872 356788999999999986211 000000000000 000000100
Q ss_pred HHHHHHHHHHHhhcC----------------CcchHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCC
Q 001733 533 TRRIAFKALMQISSH----------------HPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLE 596 (1019)
Q Consensus 533 ~~~~A~~aL~~Ls~~----------------~~~~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~ 596 (1019)
...++...-... +..-..+...-+|.+-+.+|.... .....|.++.+|.||+.+...
T Consensus 480 ---~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~----n~~TlEasaGaLQNltA~~~~ 552 (717)
T KOG1048|consen 480 ---ESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSK----NDNTLEASAGALQNLTAGLWT 552 (717)
T ss_pred ---cccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhc----chHHHHHhhhhHhhhhccCCc
Confidence 111111111111 111122334445666455555321 247789999999999887655
Q ss_pred cccccccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCCC----
Q 001733 597 HHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPH---- 672 (1019)
Q Consensus 597 ~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~---- 672 (1019)
+.... -+..+..+.+.+.|+.||+. .++.+...++.+|.+|+.+... ++.|. .++++.|++.|....
T Consensus 553 ~~~~~---~~~v~~kekgl~~l~~ll~~-~~~~vv~s~a~~LrNls~d~rn----k~lig-k~a~~~lv~~Lp~~~~~~~ 623 (717)
T KOG1048|consen 553 WSEYM---RGAVFRKEKGLPPLVELLRN-DDSDVVRSAAGALRNLSRDIRN----KELIG-KYAIPDLVRCLPGSGPSTS 623 (717)
T ss_pred chhHH---HhhhhhhccCccHHHHHHhc-CCchHHHHHHHHHhhhccCchh----hhhhh-cchHHHHHHhCcCCCCCcC
Confidence 43221 12334677889999999999 9999999999999999998765 34444 689999999997543
Q ss_pred --HHHHHHHHHHHHHhCcCCChhHHHHhhhcCCChhHhhcccCCCCcChHHHHHHHHHHhccCCCChhhHHHHHhCCC
Q 001733 673 --DELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCPTETIHITEKQAVSAKFLAKLPHQNLTLNLALSARNV 748 (1019)
Q Consensus 673 --~~vr~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~LV~lL~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~l~~~g~ 748 (1019)
+++...++..|.++.........+.+. .++++.|+.+..+.. +..+..+|..+|..|-. -.++...+...|.
T Consensus 624 ~sedtv~~vc~tl~niv~~~~~nAkdl~~--~~g~~kL~~I~~s~~-S~k~~kaAs~vL~~lW~-y~eLh~~~kk~g~ 697 (717)
T KOG1048|consen 624 LSEDTVRAVCHTLNNIVRKNVLNAKDLLE--IKGIPKLRLISKSQH-SPKEFKAASSVLDVLWQ-YKELHFKLKKKGF 697 (717)
T ss_pred chHHHHHHHHHhHHHHHHHhHHHHHHHHh--ccChHHHHHHhcccC-CHHHHHHHHHHHHHHHH-HHHHhhhHhhhhh
Confidence 578889999999998544444444444 589999999998865 56777777777777754 4444444444443
No 14
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.63 E-value=1.8e-14 Score=172.48 Aligned_cols=340 Identities=17% Similarity=0.170 Sum_probs=257.3
Q ss_pred cccchHHHhcCChHHHHHHhhcC---CHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHH----------HHhcCCC-
Q 001733 340 QYNKVQVRNVGVLPLLTKLLEYK---DRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILI----------KLLSSSH- 405 (1019)
Q Consensus 340 ~~~r~~i~~~g~i~~Lv~lL~s~---~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv----------~lL~~~~- 405 (1019)
++.-..+...|-+|+|+++|-.. +.+.+..|-.+|.|+....++.+..=.+..+++.|= ..|..+.
T Consensus 225 ~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~ 304 (2195)
T KOG2122|consen 225 PESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGP 304 (2195)
T ss_pred chhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33445677889999999999753 567888999999999865555433322223332222 2222211
Q ss_pred ------hhHHH-HHHHHHHHhccChhhhhhhhcccchHHHHHHhhhc----------CCCChHHHHHHHHHHHHhcCCC-
Q 001733 406 ------RPVRH-ESLLLLLELSSTRSLCEKIGSIPGGILVLITFKFN----------WSIDVFAAEIADQILRNLERNP- 467 (1019)
Q Consensus 406 ------~~~r~-~Aa~~L~~Ls~~~~~~~~i~~~~g~I~~LV~lL~~----------~~~~~~~~~~A~~aL~nLs~~~- 467 (1019)
.+-+. .|+.+|..+|.++++++.+.. .|++..+-+|+.. +......++.|..+|-||...+
T Consensus 305 ~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~E-LG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv 383 (2195)
T KOG2122|consen 305 AIAPASDEHQLCAALCTLMKLSFDEEHRHAMNE-LGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDV 383 (2195)
T ss_pred CCCCcccchhhHHHHHHHHHhhccHHHHHHHHH-hhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccc
Confidence 13344 788999999999999998865 8888888887641 1123467899999999999655
Q ss_pred CchHHHHh-cCChHHHHHHhccCCHHHHHHHHHHHHHhccCc-c-ccccccc-chHHHHHH-HHhcCChHHHHHHHHHHH
Q 001733 468 DNIKCMAE-NGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGH-D-SKINVPG-RAASTLIR-MVHSGNSLTRRIAFKALM 542 (1019)
Q Consensus 468 ~n~~~i~~-~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~-~-~~~~i~~-~~i~~Lv~-lL~~~~~~~~~~A~~aL~ 542 (1019)
.||..+.. .|.+..+|..|.+.++++..-.+.+|.||+... . .|..+.+ |-+..|+. .|+.......+..+.+||
T Consensus 384 ~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALW 463 (2195)
T KOG2122|consen 384 ANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALW 463 (2195)
T ss_pred cchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHh
Confidence 47888764 599999999999999999999999999999843 3 3444455 44777777 455566677888999999
Q ss_pred HhhcCC-cchHHHHH-cCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCcccccccccCcccchhhhHHHHHH
Q 001733 543 QISSHH-PSCKILVE-AGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIY 620 (1019)
Q Consensus 543 ~Ls~~~-~~~~~l~~-~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~ 620 (1019)
||+.+. +|+..|.. -|++..||.+|...+-. ....+.+.|-.+|.|++.--...+. ..+++...+++..|++
T Consensus 464 NLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs-~tLaIIEsaGGILRNVSS~IAt~E~-----yRQILR~~NCLq~LLQ 537 (2195)
T KOG2122|consen 464 NLSAHCTENKAEICAVDGALAFLVGTLSYEGQS-NTLAIIESAGGILRNVSSLIATCED-----YRQILRRHNCLQTLLQ 537 (2195)
T ss_pred hhhhcccccchhhhcccchHHHHHhhccccCCc-chhhhhhcCccHHHHHHhHhhccch-----HHHHHHHhhHHHHHHH
Confidence 999877 68888887 79999999999865321 1236779999999998765332221 2367888999999999
Q ss_pred HHcCCCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHhCcCC
Q 001733 621 MLKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTLSPYL 690 (1019)
Q Consensus 621 LL~~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~~vr~~A~~~L~~Ls~~~ 690 (1019)
.|++ .+-.+-.+++++||||..-. .+-.+.+++.|+++.|..|+++.+..+-+.++.+|.||-.+.
T Consensus 538 ~LKS-~SLTiVSNaCGTLWNLSAR~---p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 538 HLKS-HSLTIVSNACGTLWNLSARS---PEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred Hhhh-cceEEeecchhhhhhhhcCC---HHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 9999 88889999999999997533 334678999999999999999999999999999999998543
No 15
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.63 E-value=3.2e-14 Score=170.35 Aligned_cols=357 Identities=17% Similarity=0.175 Sum_probs=277.0
Q ss_pred HHHHHHHHHHhcCCCCchHHHHhcCChHHHHHHhcc---CCHHHHHHHHHHHHHhccC-ccccccccc-chHHHHH----
Q 001733 453 AEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNE---GSEEIQMEMASYLGEIVLG-HDSKINVPG-RAASTLI---- 523 (1019)
Q Consensus 453 ~~~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~lL~~---~~~~~~~~aa~~L~~La~~-~~~~~~i~~-~~i~~Lv---- 523 (1019)
....+..|..++.+++.+..|...|.+|.|+++|.- ++.+.+..+-.+|.||..+ ++.+..=.+ .+++.|=
T Consensus 211 ~ee~ar~fLemSss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIra 290 (2195)
T KOG2122|consen 211 EEEMARTFLEMSSSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRA 290 (2195)
T ss_pred HHHHHHHHHHhccCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHH
Confidence 456678888999999999999999999999999973 3467888899999999873 443322222 1333332
Q ss_pred ------HHHhcCC-------hHHHH-HHHHHHHHhhcCCcchHHHHHcCcHHHHHHHHhhhcc-------CCCChhHHHH
Q 001733 524 ------RMVHSGN-------SLTRR-IAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRII-------HNEPMNSKEE 582 (1019)
Q Consensus 524 ------~lL~~~~-------~~~~~-~A~~aL~~Ls~~~~~~~~l~~~G~v~~Lv~lL~~~~~-------~~~~~~~~~~ 582 (1019)
..+..+. .+=+- .|+.+|..++-+.+.|..|-+.|++..+-+||..... +.....+++.
T Consensus 291 YC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrY 370 (2195)
T KOG2122|consen 291 YCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRY 370 (2195)
T ss_pred HHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 2222221 12223 6788888999888899999999999998888764321 1122367899
Q ss_pred HHHHHHHHHhcCCCcccccccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChH
Q 001733 583 AAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASY 662 (1019)
Q Consensus 583 A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~ 662 (1019)
|..+|.||.-+..... .......|++..+|..|.. .++++.+-.+.+|.||....+ .+..+++++.|-+.
T Consensus 371 a~MALTNLTFGDv~NK-------a~LCs~rgfMeavVAQL~s-~peeL~QV~AsvLRNLSWRAD--~nmKkvLrE~GsVt 440 (2195)
T KOG2122|consen 371 AGMALTNLTFGDVANK-------ATLCSQRGFMEAVVAQLIS-APEELLQVYASVLRNLSWRAD--SNMKKVLRETGSVT 440 (2195)
T ss_pred HHHHhhccccccccch-------hhhhhhhhHHHHHHHHHhc-ChHHHHHHHHHHHHhcccccc--ccHHHHHHhhhhHH
Confidence 9999999988765432 2344567899999999998 888999999999999988654 35667889999999
Q ss_pred HHHH-hhcCCCHHHHHHHHHHHHHhCcCCChhHHHHhhhcCCChhHhhcccCCCCc--ChHHHHHHHHHHhccCC---CC
Q 001733 663 SLLE-VINNPHDELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCPTETIH--ITEKQAVSAKFLAKLPH---QN 736 (1019)
Q Consensus 663 ~Lv~-LL~~~~~~vr~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~LV~lL~~~~~--~~~~~~~A~~~L~nL~~---~~ 736 (1019)
.|.. .|+...+......+.+|.||+.|+..+. ..|+...|++..||.+|....+ ...+...|-|||.|... ..
T Consensus 441 aLa~~al~~~kEsTLKavLSALWNLSAHcteNK-A~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~ 519 (2195)
T KOG2122|consen 441 ALAACALRNKKESTLKAVLSALWNLSAHCTENK-AEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATC 519 (2195)
T ss_pred HHHHHHHHhcccchHHHHHHHHhhhhhcccccc-hhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhcc
Confidence 9984 5667777788889999999997766543 3456556999999999987642 33567788899988743 45
Q ss_pred hhhHHHHHhCCChHHHHHHHHhhhccCCCccchhhhHHHHHHHHHHHHhcCCCchhHHHHHHhCCchHHHHHHHhcCCcH
Q 001733 737 LTLNLALSARNVVPTILQTINLIQRSGTRTSRYASAYLEGLIGILVRFTTTLYEPQILFLARTHNFTSVFTELLMKTSCD 816 (1019)
Q Consensus 737 ~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~lt~~~~~~~~~~~~~~~g~i~~Lv~LL~~~~~~ 816 (1019)
...++.|.+.+.|..|++.|.+ +.-.++.|++|+|.++.+. +|+.|+.+.+.|+++.|..|+++ .+.
T Consensus 520 E~yRQILR~~NCLq~LLQ~LKS----------~SLTiVSNaCGTLWNLSAR--~p~DQq~LwD~gAv~mLrnLIhS-Khk 586 (2195)
T KOG2122|consen 520 EDYRQILRRHNCLQTLLQHLKS----------HSLTIVSNACGTLWNLSAR--SPEDQQMLWDDGAVPMLRNLIHS-KHK 586 (2195)
T ss_pred chHHHHHHHhhHHHHHHHHhhh----------cceEEeecchhhhhhhhcC--CHHHHHHHHhcccHHHHHHHHhh-hhh
Confidence 6678899999999999999974 2345788999999999986 99999999999999999999999 899
Q ss_pred HHHHHHHHHHhhhcccC
Q 001733 817 EVQKLAAIGLENLSSES 833 (1019)
Q Consensus 817 ~vk~~AA~aL~nLs~~~ 833 (1019)
.+-.-+|.||.||-...
T Consensus 587 MIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 587 MIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhhhhHHHHHHHHhcCC
Confidence 99999999999997666
No 16
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=1.6e-13 Score=143.57 Aligned_cols=306 Identities=13% Similarity=0.187 Sum_probs=242.1
Q ss_pred CCHHHHHHHHHHHHHHHhcccccchHHHhcCChHHHHHHhh--cCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHH
Q 001733 320 GSDRMVLEAIKDLQTVCQRKQYNKVQVRNVGVLPLLTKLLE--YKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISIL 397 (1019)
Q Consensus 320 ~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~--s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~L 397 (1019)
..+.-..+++..|-.+....|+. .++.+...++.+|. +++.++-...+..+..-+..++.||..+++.+.++.+
T Consensus 119 ~~~~~l~ksL~al~~lt~~qpdl----~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li 194 (461)
T KOG4199|consen 119 PNESVLKKSLEAINSLTHKQPDL----FDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELI 194 (461)
T ss_pred CchhHHHHHHHHHHHhhcCCcch----hccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHH
Confidence 34445678888888888877764 46778888999886 4577788888888888887899999999999999999
Q ss_pred HHHhcC-CChhHHHHHHHHHHHhccChhhhhhhhc---------ccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCC
Q 001733 398 IKLLSS-SHRPVRHESLLLLLELSSTRSLCEKIGS---------IPGGILVLITFKFNWSIDVFAAEIADQILRNLERNP 467 (1019)
Q Consensus 398 v~lL~~-~~~~~r~~Aa~~L~~Ls~~~~~~~~i~~---------~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~ 467 (1019)
...|.. +...+.+.+.++++-|..+++.+...|. ..|++..|++.+.- .-||.....+..+|..|+..+
T Consensus 195 ~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A-~~dp~~L~~l~~tl~~lAVr~ 273 (461)
T KOG4199|consen 195 LQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQA-GIDPDSLVSLSTTLKALAVRD 273 (461)
T ss_pred HHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHc-cCCccHHHHHHHHHHHHHHHH
Confidence 977765 4445777888999999887765544332 26678899999874 446889999999999999999
Q ss_pred CchHHHHhcCChHHHHHHhccCC-H---HHHHHHHHHHHHhccCccccccccc-chHHHHHHHHhc--CChHHHHHHHHH
Q 001733 468 DNIKCMAENGLLEPLMHHLNEGS-E---EIQMEMASYLGEIVLGHDSKINVPG-RAASTLIRMVHS--GNSLTRRIAFKA 540 (1019)
Q Consensus 468 ~n~~~i~~~G~i~~Lv~lL~~~~-~---~~~~~aa~~L~~La~~~~~~~~i~~-~~i~~Lv~lL~~--~~~~~~~~A~~a 540 (1019)
+.+..++++|++..|++++.+.+ . .....+++.|..|+.++.+|..|++ ||.+.++.++.. .+|.+.+.++.+
T Consensus 274 E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~ 353 (461)
T KOG4199|consen 274 EICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAI 353 (461)
T ss_pred HHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHH
Confidence 99999999999999999998733 3 3456888999999999999999988 689999987653 578899999999
Q ss_pred HHHhhcC-CcchHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCcccccccccCcccchhhhHHHHH
Q 001733 541 LMQISSH-HPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNII 619 (1019)
Q Consensus 541 L~~Ls~~-~~~~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll 619 (1019)
+.-||-. +++...+++.|+-...++.|+.+.. ...+|++|++++.|++........+ .-...++.|+
T Consensus 354 i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~---~a~vQrnac~~IRNiv~rs~~~~~~---------~l~~GiE~Li 421 (461)
T KOG4199|consen 354 ISILCLRSPDHSAKAIEAGAADLAVQAMKAHPV---AAQVQRNACNMIRNIVVRSAENRTI---------LLANGIEKLI 421 (461)
T ss_pred HHHHHhcCcchHHHHHhcchHHHHHHHHHhCcH---HHHHHHHHHHHHHHHHHhhhhccch---------HHhccHHHHH
Confidence 9999954 4568889999999999999986531 2478999999999999887655432 3345667777
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHhC
Q 001733 620 YMLKNSTPDELNVHLIRILQCLTK 643 (1019)
Q Consensus 620 ~LL~~~~~~~v~~~a~~aL~~La~ 643 (1019)
..-+. .++.....|-.+|.-|..
T Consensus 422 ~~A~~-~h~tce~~akaALRDLGc 444 (461)
T KOG4199|consen 422 RTAKA-NHETCEAAAKAALRDLGC 444 (461)
T ss_pred HHHHh-cCccHHHHHHHHHHhcCc
Confidence 77776 667776666666655544
No 17
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.61 E-value=8.7e-13 Score=156.42 Aligned_cols=400 Identities=15% Similarity=0.152 Sum_probs=289.5
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHhcCCChhHHHHHHHHHHHhccChhhhhhhhcc
Q 001733 353 PLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSSHRPVRHESLLLLLELSSTRSLCEKIGSI 432 (1019)
Q Consensus 353 ~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~~~~~~~i~~~ 432 (1019)
+.+...|.+.+.+....++.+|..+-. ....... ..+..+.|...|.++++.+|..++..|.++..+.+....+...
T Consensus 41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~-~~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~ 117 (503)
T PF10508_consen 41 PVLFDCLNTSNREQVELICDILKRLLS-ALSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVD 117 (503)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHh-ccCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcC
Confidence 347788888888888888888887752 2222222 4677899999999999999999999999998887776666667
Q ss_pred cchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhcc-Ccccc
Q 001733 433 PGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVL-GHDSK 511 (1019)
Q Consensus 433 ~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~-~~~~~ 511 (1019)
.+.++.++..+ ..+|..+.+.|+.+|.+|+.++.+...++..+.++.|..++...++.++..+..++.+++. +++..
T Consensus 118 ~~l~~~i~~~L--~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~ 195 (503)
T PF10508_consen 118 NELLPLIIQCL--RDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA 195 (503)
T ss_pred ccHHHHHHHHH--cCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH
Confidence 99999999999 4678899999999999999998888889899999999999998788999999999999987 45555
Q ss_pred ccccc-chHHHHHHHHhcCChHHHHHHHHHHHHhhcCCcchHHHHHcCcHHHHHHHHhhhccCCCChhHH-HHHHHHHHH
Q 001733 512 INVPG-RAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSK-EEAAAILAN 589 (1019)
Q Consensus 512 ~~i~~-~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~-~~A~~~L~~ 589 (1019)
..+.. |.++.+++.+.+++.-++.+|+.+|..|+..+.+...+.+.|+++.|..++.....+.....+. -.......+
T Consensus 196 ~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~ 275 (503)
T PF10508_consen 196 EAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGN 275 (503)
T ss_pred HHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHH
Confidence 55555 5689999999998888999999999999998888999999999999999998765431001111 122234455
Q ss_pred HHhcCCCcccccccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCchHHHHHHH--HHcCC----hHH
Q 001733 590 ILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPMATIVSVI--KETEA----SYS 663 (1019)
Q Consensus 590 L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~i--~~~g~----i~~ 663 (1019)
++...+ ..+ .-.-..++..+.+++.. .++..+..|..+|..++++.++ ...+ ...+. +..
T Consensus 276 la~~~~--~~v-------~~~~p~~~~~l~~~~~s-~d~~~~~~A~dtlg~igst~~G----~~~L~~~~~~~~~~~l~~ 341 (503)
T PF10508_consen 276 LARVSP--QEV-------LELYPAFLERLFSMLES-QDPTIREVAFDTLGQIGSTVEG----KQLLLQKQGPAMKHVLKA 341 (503)
T ss_pred HHhcCh--HHH-------HHHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHHhCCHHH----HHHHHhhcchHHHHHHHH
Confidence 555311 111 01124566677777777 8999999999999999987654 2223 22223 344
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhC--cCC--ChhHH-------HHhhhcCCChh-HhhcccCCCCcChHHHHHHHHHHhc
Q 001733 664 LLEVINNPHDELAVAAIKLLTTLS--PYL--GHTLV-------ERLCKTRGQPE-NLIQCPTETIHITEKQAVSAKFLAK 731 (1019)
Q Consensus 664 Lv~LL~~~~~~vr~~A~~~L~~Ls--~~~--~~~~~-------~~l~~~~g~i~-~LV~lL~~~~~~~~~~~~A~~~L~n 731 (1019)
+.....+...++|..+..+|.++- ... .+++. +.+. .+... .++.+++.+= +++|.++..+|..
T Consensus 342 ~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~--~~~~~~~l~~~~~qPF--~elr~a~~~~l~~ 417 (503)
T PF10508_consen 342 IGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLS--GSPLSNLLMSLLKQPF--PELRCAAYRLLQA 417 (503)
T ss_pred HHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhc--CCchHHHHHHHhcCCc--hHHHHHHHHHHHH
Confidence 445666777899999999999993 211 11111 1122 23444 7788887764 5999999999999
Q ss_pred cCCCChhhHHHHHhCCChHHHHHHHHhhhccCCCccchhhhHHHHHHHHHH
Q 001733 732 LPHQNLTLNLALSARNVVPTILQTINLIQRSGTRTSRYASAYLEGLIGILV 782 (1019)
Q Consensus 732 L~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~ 782 (1019)
+......++...-..|.++.+++- ..+.++.....+-..+.+|.
T Consensus 418 l~~~~Wg~~~i~~~~gfie~lldr-------~~E~~K~~ke~K~~ii~~l~ 461 (503)
T PF10508_consen 418 LAAQPWGQREICSSPGFIEYLLDR-------STETTKEGKEAKYDIIKALA 461 (503)
T ss_pred HhcCHHHHHHHHhCccHHhhhcCC-------CCCCCHHHHHHHHHHHHHHH
Confidence 998776665544455655554432 22233344444555555555
No 18
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.60 E-value=9.9e-16 Score=128.07 Aligned_cols=63 Identities=46% Similarity=0.828 Sum_probs=59.8
Q ss_pred ccccccCcccCCCceecCCCccccHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCccCHhHHHHHHHH
Q 001733 233 TFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVALKTTIEEW 300 (1019)
Q Consensus 233 ~~~Cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~~~~l~pn~~Lr~~I~~w 300 (1019)
+|.||||+++|+|||+++|||+|||+||++|+.. +.+||.|+++++..+++||..||+.|++|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-----~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-----HGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-----CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 5899999999999999999999999999999987 45899999999999999999999999998
No 19
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.58 E-value=8.2e-13 Score=138.35 Aligned_cols=342 Identities=14% Similarity=0.157 Sum_probs=263.2
Q ss_pred HHHHHHHHHHHHhcccccchHHHhcCChHHHHHHhh---cCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHh
Q 001733 325 VLEAIKDLQTVCQRKQYNKVQVRNVGVLPLLTKLLE---YKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLL 401 (1019)
Q Consensus 325 ~~~Al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~---s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL 401 (1019)
...-+..|-.-|+.+...|..-...|+.|.++-++. +++..+..+++.+|..+.... ..+.++.++..++.+|
T Consensus 79 ~s~ll~~l~d~ck~~~A~r~la~~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~q----pdl~da~g~~vvv~lL 154 (461)
T KOG4199|consen 79 TTELLEQLADECKKSLAHRVLAGKNGAHDALITLLELAESPNESVLKKSLEAINSLTHKQ----PDLFDAEAMAVVLKLL 154 (461)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhccCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcCC----cchhccccHHHHHHHH
Confidence 333444455566666677777778888888877664 467888899999998887433 4456788899999999
Q ss_pred cC--CChhHHHHHHHHHHHhcc-ChhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCch--------
Q 001733 402 SS--SHRPVRHESLLLLLELSS-TRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNI-------- 470 (1019)
Q Consensus 402 ~~--~~~~~r~~Aa~~L~~Ls~-~~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~-------- 470 (1019)
.. ++.++.......+..-+. ++.+|+.+.. .+..+.+...|...+.+ .+.+.+..+++.|...++.|
T Consensus 155 ~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~-~~il~Li~~~l~~~gk~-~~VRel~~a~r~l~~dDDiRV~fg~ah~ 232 (461)
T KOG4199|consen 155 ALKVESEEVTLLTLQWLQKACIMHEVNRQLFME-LKILELILQVLNREGKT-RTVRELYDAIRALLTDDDIRVVFGQAHG 232 (461)
T ss_pred hcccchHHHHHHHHHHHHHHHHHhHHHHHHHHH-hhHHHHHHHHHcccCcc-HHHHHHHHHHHHhcCCCceeeecchhhH
Confidence 65 445666666666666665 4556776764 88888888787644444 78899999999998877643
Q ss_pred --HHHHhcCChHHHHHHhccC-CHHHHHHHHHHHHHhccCccccccccc-chHHHHHHHHhcCC-hH---HHHHHHHHHH
Q 001733 471 --KCMAENGLLEPLMHHLNEG-SEEIQMEMASYLGEIVLGHDSKINVPG-RAASTLIRMVHSGN-SL---TRRIAFKALM 542 (1019)
Q Consensus 471 --~~i~~~G~i~~Lv~lL~~~-~~~~~~~aa~~L~~La~~~~~~~~i~~-~~i~~Lv~lL~~~~-~~---~~~~A~~aL~ 542 (1019)
+.+++.|++..|++.|..+ +|++......+|..|+..++.+..|.+ ||+..|++++.+.+ .. ..+.+++.|.
T Consensus 233 hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLr 312 (461)
T KOG4199|consen 233 HARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLR 312 (461)
T ss_pred HHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHH
Confidence 4567788999999999854 578888999999999999999999988 78999999998843 33 4567899999
Q ss_pred HhhcCCcchHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCcccccccccCcccchhhhHHHHHHHH
Q 001733 543 QISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYML 622 (1019)
Q Consensus 543 ~Ls~~~~~~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL 622 (1019)
.|+..++++..+++.|+.+.++.++..+..+ +.+.+.++.++.-|+-+.+++... +.+.|.-...++-+
T Consensus 313 alAG~DsvKs~IV~~gg~~~ii~l~~~h~~~---p~Vi~~~~a~i~~l~LR~pdhsa~--------~ie~G~a~~avqAm 381 (461)
T KOG4199|consen 313 ALAGSDSVKSTIVEKGGLDKIITLALRHSDD---PLVIQEVMAIISILCLRSPDHSAK--------AIEAGAADLAVQAM 381 (461)
T ss_pred HHhCCCchHHHHHHhcChHHHHHHHHHcCCC---hHHHHHHHHHHHHHHhcCcchHHH--------HHhcchHHHHHHHH
Confidence 9999999999999999999999998876532 477788888899999887766533 34455666667777
Q ss_pred cCC-CCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHhC
Q 001733 623 KNS-TPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTLS 687 (1019)
Q Consensus 623 ~~~-~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~~vr~~A~~~L~~Ls 687 (1019)
+.. ....+|.++++.+.++...+.. .+. +.-..|+..|+..-...++..+..|..+|+-|.
T Consensus 382 kahP~~a~vQrnac~~IRNiv~rs~~---~~~-~~l~~GiE~Li~~A~~~h~tce~~akaALRDLG 443 (461)
T KOG4199|consen 382 KAHPVAAQVQRNACNMIRNIVVRSAE---NRT-ILLANGIEKLIRTAKANHETCEAAAKAALRDLG 443 (461)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHhhhh---ccc-hHHhccHHHHHHHHHhcCccHHHHHHHHHHhcC
Confidence 752 2367999999999999876543 223 333578889999999999999999999999887
No 20
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.52 E-value=7.1e-12 Score=135.16 Aligned_cols=390 Identities=12% Similarity=0.055 Sum_probs=290.9
Q ss_pred HhcCChHHHHHHhhcCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHhcC----CCh---hHHHHHHHHHHHh
Q 001733 347 RNVGVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSS----SHR---PVRHESLLLLLEL 419 (1019)
Q Consensus 347 ~~~g~i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL~~----~~~---~~r~~Aa~~L~~L 419 (1019)
.++|++..|.+...|+|.++.+...++|.|++..+.++|..+.+.|+-..++++|+. +++ +.-..+...|.|.
T Consensus 84 I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny 163 (604)
T KOG4500|consen 84 IDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNY 163 (604)
T ss_pred hHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHh
Confidence 467889999999999999999999999999999999999999999997777777764 222 4455666788888
Q ss_pred ccCh-hhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcC-CCCch-HHHHhcCChHHHHHHhcc-CCHHHHH
Q 001733 420 SSTR-SLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLER-NPDNI-KCMAENGLLEPLMHHLNE-GSEEIQM 495 (1019)
Q Consensus 420 s~~~-~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~-~~~n~-~~i~~~G~i~~Lv~lL~~-~~~~~~~ 495 (1019)
+... +.+.++. ..|.++.|+.++.-+-.+.+..+......+||.. ..++. ....+...+..|+++|.+ -.++..+
T Consensus 164 ~l~~~~l~aq~~-~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~e 242 (604)
T KOG4500|consen 164 ILDSRELRAQVA-DAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDE 242 (604)
T ss_pred hCCcHHHHHHHH-hcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhh
Confidence 7754 5555554 4999999999986555666777777777888753 22333 333456777788888864 3466777
Q ss_pred HHHHHHHHhccCcccccccccch-HHHHHHHHhc-CChH-------HHHHHHHHHHHhhcCCcchHHHHHcC-cHHHHHH
Q 001733 496 EMASYLGEIVLGHDSKINVPGRA-ASTLIRMVHS-GNSL-------TRRIAFKALMQISSHHPSCKILVEAG-IVQVMAE 565 (1019)
Q Consensus 496 ~aa~~L~~La~~~~~~~~i~~~~-i~~Lv~lL~~-~~~~-------~~~~A~~aL~~Ls~~~~~~~~l~~~G-~v~~Lv~ 565 (1019)
-+..+|+..+.++..|..++++| +..++.+++. +... .-..++....-|...++.-+.+...| .+..++.
T Consensus 243 M~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~s 322 (604)
T KOG4500|consen 243 MIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLES 322 (604)
T ss_pred HHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHH
Confidence 77889999999999999998854 7888888876 2211 22334444444555566666676666 6777777
Q ss_pred HHhhhccCCCChhHHHHHHHHHHHHHhcCCCcccccccccCcccchhhhHHHHHHHHcC----CCCHHHHHHHHHHHHHH
Q 001733 566 EMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKN----STPDELNVHLIRILQCL 641 (1019)
Q Consensus 566 lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~----~~~~~v~~~a~~aL~~L 641 (1019)
.+.+.+ ......+.-++.|++++.... ..+...+++.+|+.+|.. .++...|..++.+|.++
T Consensus 323 w~~S~d-----~~l~t~g~LaigNfaR~D~~c---------i~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl 388 (604)
T KOG4500|consen 323 WFRSDD-----SNLITMGSLAIGNFARRDDIC---------IQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNL 388 (604)
T ss_pred HhcCCc-----hhHHHHHHHHHHhhhccchHH---------HHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhc
Confidence 666543 467778888899999986543 346778999999999864 25678899999999999
Q ss_pred hCCCCchHHHHHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHhCcCCChhHHHHhhhcCCChhHhhcccCCCCcChHH
Q 001733 642 TKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCPTETIHITEK 721 (1019)
Q Consensus 642 a~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~~vr~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~LV~lL~~~~~~~~~ 721 (1019)
.--..+ +.++..+|..+.++.++....+.+...-...|+-+-+.. +.+...+.+....++.||..-++++ -..+
T Consensus 389 ~IPv~n----ka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~q-e~~a~eL~kn~~l~ekLv~Wsks~D-~aGv 462 (604)
T KOG4500|consen 389 MIPVSN----KAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQ-EYIACELAKNPELFEKLVDWSKSPD-FAGV 462 (604)
T ss_pred cccCCc----hhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhch-HHHHHHHhcCHHHHHHHHHhhhCCc-cchh
Confidence 874433 457888999999999999999998888777777776532 2366666665678899999998888 3557
Q ss_pred HHHHHHHHhccCCC--ChhhHHHHHhCCChHHHHHHHH
Q 001733 722 QAVSAKFLAKLPHQ--NLTLNLALSARNVVPTILQTIN 757 (1019)
Q Consensus 722 ~~~A~~~L~nL~~~--~~~~~~~l~~~g~l~~Lv~lL~ 757 (1019)
...+.+.+..+..+ ..+....+.+.|++...++.+-
T Consensus 463 ~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t 500 (604)
T KOG4500|consen 463 AGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFT 500 (604)
T ss_pred hhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHH
Confidence 77777777777664 3445567788999999999875
No 21
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=6.6e-12 Score=136.65 Aligned_cols=388 Identities=14% Similarity=0.126 Sum_probs=282.2
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCccccccccc-chHHHHHHHHhcC
Q 001733 451 FAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDSKINVPG-RAASTLIRMVHSG 529 (1019)
Q Consensus 451 ~~~~~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~i~~-~~i~~Lv~lL~~~ 529 (1019)
...+.|...|.||+.+-.--.+|.+...|..||+.|...+.++.......|..|+...++|..+.+ +.+..|+++....
T Consensus 278 qLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~ 357 (791)
T KOG1222|consen 278 QLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQ 357 (791)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCC
Confidence 456678889999998777778899999999999999988999999999999999999999999988 5799999999999
Q ss_pred ChHHHHHHHHHHHHhhcCCcchHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCcccccccccCccc
Q 001733 530 NSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTM 609 (1019)
Q Consensus 530 ~~~~~~~A~~aL~~Ls~~~~~~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l 609 (1019)
+++++...+..|.||+-+...+..|+..|.+|.|..+|.+. .-+.-|..+|..++...... .-+
T Consensus 358 h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d-------~~~~iA~~~lYh~S~dD~~K---------~Mf 421 (791)
T KOG1222|consen 358 HPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSD-------TKHGIALNMLYHLSCDDDAK---------AMF 421 (791)
T ss_pred CHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCc-------ccchhhhhhhhhhccCcHHH---------HHH
Confidence 99999999999999999999999999999999999988754 23356778888876654322 234
Q ss_pred chhhhHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHH-hhcCCCHHHHHHHHHHHHHhCc
Q 001733 610 VSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLE-VINNPHDELAVAAIKLLTTLSP 688 (1019)
Q Consensus 610 ~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~-LL~~~~~~vr~~A~~~L~~Ls~ 688 (1019)
.-.+.|+.++..+-...+..+-...+..-.++|-...+ .+.+.+..|+..|.. -+.+.+.-+ .+.++++|.
T Consensus 422 ayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRN----aQlvceGqgL~~LM~ra~k~~D~lL----mK~vRniSq 493 (791)
T KOG1222|consen 422 AYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRN----AQLVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQ 493 (791)
T ss_pred HHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcccc----ceEEecCcchHHHHHHHhcccchHH----HHHHHHhhh
Confidence 55678888888766535566655555555678776665 245666777777774 344444432 357899998
Q ss_pred CCChhHHHHhhhcCCChhHhhcccCCCCcChHHHHHHHHHHhccCCCChhhHHHHHhCCChHHHHHHHHhhhccCCCccc
Q 001733 689 YLGHTLVERLCKTRGQPENLIQCPTETIHITEKQAVSAKFLAKLPHQNLTLNLALSARNVVPTILQTINLIQRSGTRTSR 768 (1019)
Q Consensus 689 ~~~~~~~~~l~~~~g~i~~LV~lL~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~ 768 (1019)
+.+......+ ..++.|.++++..+ ++.....++|+|+||.-.+-.-...+.+...+|++-..|.. +..
T Consensus 494 Heg~tqn~Fi----dyvgdLa~i~~nd~-~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~p---ga~---- 561 (791)
T KOG1222|consen 494 HEGATQNMFI----DYVGDLAGIAKNDN-SESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQP---GAD---- 561 (791)
T ss_pred ccchHHHHHH----HHHHHHHHHhhcCc-hHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcC---Ccc----
Confidence 7765433333 36788888887766 56677889999999988777777888999999999999863 211
Q ss_pred hhhhHHHHHHHHHHHHhcCCCchhHHHHHHhCCchHHHHHHHhcC-CcHHHHHHHHHHHhhhcccCCcCCCCCCcCCccc
Q 001733 769 YASAYLEGLIGILVRFTTTLYEPQILFLARTHNFTSVFTELLMKT-SCDEVQKLAAIGLENLSSESINLSKPPQIKSKKF 847 (1019)
Q Consensus 769 ~~~~~~e~a~~aL~~lt~~~~~~~~~~~~~~~g~i~~Lv~LL~~~-~~~~vk~~AA~aL~nLs~~~~~l~~~~~~~~~~~ 847 (1019)
...-+++ .+-++.-.++ +......+..+++|+.|++||+.. .+++.-..-.....++-... ++
T Consensus 562 eddLvL~-~vi~~GT~a~---d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He--~t---------- 625 (791)
T KOG1222|consen 562 EDDLVLQ-IVIACGTMAR---DLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHE--LT---------- 625 (791)
T ss_pred chhhhhH-HHHHhhhhhh---hhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH--HH----------
Confidence 1122222 2223333333 667777788899999999999874 33444333333333332211 00
Q ss_pred ccccccCcccccCCCCCCCCCCCcccCCccccCccchhh-hccchHHHHhhhccCchhhHHHHHHHHHhhhccCcchh
Q 001733 848 MKFFSLPKSLSVGSSKKKSVSLCPVHRGACSSQNTFCLI-DAKAVDRLLACLYHENVEVVEAALSALCTLLDEKVDVD 924 (1019)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~c~v~~~~cs~~~~~~Lv-~~gai~~Lv~lL~~~d~~v~~~Al~AL~~L~~d~~~~~ 924 (1019)
...++ +..+-.-|+++.++.+.+++...=.+|-.++..+..|-
T Consensus 626 ----------------------------------r~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EWA 669 (791)
T KOG1222|consen 626 ----------------------------------RRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEWA 669 (791)
T ss_pred ----------------------------------HHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHHH
Confidence 00111 22334579999999999999999999999886655443
No 22
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=1.4e-11 Score=134.24 Aligned_cols=391 Identities=14% Similarity=0.102 Sum_probs=270.2
Q ss_pred HHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHhcCCChhHHHHHHHHHHHhccChhhhhhhhcccchHHHHHHhh
Q 001733 364 RNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSSHRPVRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFK 443 (1019)
Q Consensus 364 ~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~~~~~~~i~~~~g~I~~LV~lL 443 (1019)
......|+..|.|++ .+-..-..+.....|..||+.|...+.+........|..||...+|+..++. .|.+..|+++.
T Consensus 277 eqLLrva~ylLlNlA-ed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~-~~iveKL~klf 354 (791)
T KOG1222|consen 277 EQLLRVAVYLLLNLA-EDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQ-NGIVEKLLKLF 354 (791)
T ss_pred HHHHHHHHHHHHHHh-hhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHh-ccHHHHHHHhc
Confidence 455667889999998 5555556677788899999999999999999999999999999999999976 89999999999
Q ss_pred hcCCCChHHHHHHHHHHHHhcCCCCchHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCccccccccc-chHHHH
Q 001733 444 FNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDSKINVPG-RAASTL 522 (1019)
Q Consensus 444 ~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~i~~-~~i~~L 522 (1019)
+..+++.++.....|+||+.+..++.+|+..|.+|.|+.+|.+.. -..-|+.+|..++.++..|..+.. ..++.|
T Consensus 355 --p~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~--~~~iA~~~lYh~S~dD~~K~MfayTdci~~l 430 (791)
T KOG1222|consen 355 --PIQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDT--KHGIALNMLYHLSCDDDAKAMFAYTDCIKLL 430 (791)
T ss_pred --CCCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcc--cchhhhhhhhhhccCcHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999999997653 334577889999999888888876 589999
Q ss_pred HHHHhcCChHHHHHHHH-HHHHhhcCCcchHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCccccc
Q 001733 523 IRMVHSGNSLTRRIAFK-ALMQISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQ 601 (1019)
Q Consensus 523 v~lL~~~~~~~~~~A~~-aL~~Ls~~~~~~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~ 601 (1019)
++.+-+++..-...++- .-.|||.+..|.+.+.+-.++..|++--.... + -.-..++.|+++.....++..
T Consensus 431 mk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~-----D---~lLmK~vRniSqHeg~tqn~F 502 (791)
T KOG1222|consen 431 MKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSR-----D---LLLMKVVRNISQHEGATQNMF 502 (791)
T ss_pred HHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhccc-----c---hHHHHHHHHhhhccchHHHHH
Confidence 99877765443333333 33699999888888888777777766333211 0 122334566655432111100
Q ss_pred ccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCCCHHHHHHHHH
Q 001733 602 VNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIK 681 (1019)
Q Consensus 602 v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~~vr~~A~~ 681 (1019)
-+.|..|...+++ ..++.....|..
T Consensus 503 ----------idyvgdLa~i~~n---------------------------------------------d~~E~F~~EClG 527 (791)
T KOG1222|consen 503 ----------IDYVGDLAGIAKN---------------------------------------------DNSESFGLECLG 527 (791)
T ss_pred ----------HHHHHHHHHHhhc---------------------------------------------CchHHHHHHHHH
Confidence 0112222222222 122345556666
Q ss_pred HHHHhCcCCChhHHHHhhhcCCChhHhhcccCCCCcChHHHHHHHHHHhccCCCChhhHHHHHhCCChHHHHHHHHhhhc
Q 001733 682 LLTTLSPYLGHTLVERLCKTRGQPENLIQCPTETIHITEKQAVSAKFLAKLPHQNLTLNLALSARNVVPTILQTINLIQR 761 (1019)
Q Consensus 682 ~L~~Ls~~~~~~~~~~l~~~~g~i~~LV~lL~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~ 761 (1019)
.|.+|.-.. -.....+. +...+|-+-..|..+-..++.....+-.++..+. +......+..+|.++.++.+|+..+.
T Consensus 528 tlanL~v~d-ldw~~ilq-~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~-d~~cA~Lla~a~~i~tlieLL~a~Qe 604 (791)
T KOG1222|consen 528 TLANLKVTD-LDWAKILQ-SENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR-DLDCARLLAPAKLIDTLIELLQACQE 604 (791)
T ss_pred HHhhcccCC-CCHHHHHh-hccccHHHHHhhcCCccchhhhhHHHHHhhhhhh-hhHHHHHhCccccHHHHHHHHHhhcc
Confidence 777776311 12222232 2467777777776554344566666666777766 56667888889999999999986443
Q ss_pred cCCCccchhhhHHHHHHHHHHHHhcCCCchhHHHHHHhCCch-HHHHHHHhcCCcHHHHHHHHHHHhhhcccCCcCCC
Q 001733 762 SGTRTSRYASAYLEGLIGILVRFTTTLYEPQILFLARTHNFT-SVFTELLMKTSCDEVQKLAAIGLENLSSESINLSK 838 (1019)
Q Consensus 762 ~~~~~~~~~~~~~e~a~~aL~~lt~~~~~~~~~~~~~~~g~i-~~Lv~LL~~~~~~~vk~~AA~aL~nLs~~~~~l~~ 838 (1019)
+ ..+.-...-+...|.. ....++.+++.... ..|++|+.+ .+.++|+-.--+|--++.......+
T Consensus 605 D--------DEfV~QiiyVF~Q~l~---He~tr~~miket~~~AylIDLMHD-kN~eiRkVCDn~LdIiae~d~EWAK 670 (791)
T KOG1222|consen 605 D--------DEFVVQIIYVFLQFLK---HELTRRLMIKETALGAYLIDLMHD-KNAEIRKVCDNALDIIAEHDKEWAK 670 (791)
T ss_pred c--------chHHHHHHHHHHHHHH---HHHHHHHHHhhccchHHHHHHHhc-ccHHHHHHHHHHHHHHHHhhHHHHH
Confidence 2 1222222233333332 45556665554444 478999999 8999999999999888777654443
No 23
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.47 E-value=1.2e-11 Score=133.50 Aligned_cols=396 Identities=15% Similarity=0.135 Sum_probs=288.0
Q ss_pred cCCHHHHHHHHHHHHHHHhcccccchHHHhcCChHHHHHHhhc----CC---HHHHHHHHHHHHhhccCChhHHHHHHhc
Q 001733 319 AGSDRMVLEAIKDLQTVCQRKQYNKVQVRNVGVLPLLTKLLEY----KD---RNVRCAAMELLRQLVVEDDEGKEMIAET 391 (1019)
Q Consensus 319 ~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~s----~~---~~~~~~Al~~L~~La~~~~~~k~~I~~~ 391 (1019)
+.+.+...+..+.|.+.|..+.++|..+-+.|+-..++..|+. .+ .+.-.-+...|.|...++++.+..+++.
T Consensus 98 S~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~ 177 (604)
T KOG4500|consen 98 SPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADA 177 (604)
T ss_pred CCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhc
Confidence 3345667788899999999999999999999998888888864 22 3445556678888888899999999999
Q ss_pred CCHHHHHHHhcCC--ChhHHHHHHHHHHHhcc-ChhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCC
Q 001733 392 MDISILIKLLSSS--HRPVRHESLLLLLELSS-TRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPD 468 (1019)
Q Consensus 392 g~i~~Lv~lL~~~--~~~~r~~Aa~~L~~Ls~-~~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~ 468 (1019)
|.++.|...+.=+ +....+......++|.. ..++.............|++++. ...+++..+.....|...+.++.
T Consensus 178 gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~-~~v~~d~~eM~feila~~aend~ 256 (604)
T KOG4500|consen 178 GVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLP-SMVREDIDEMIFEILAKAAENDL 256 (604)
T ss_pred ccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHH-HhhccchhhHHHHHHHHHhcCcc
Confidence 9999999888643 33444555544455433 23433344445667778888886 34567788999999999999999
Q ss_pred chHHHHhcCChHHHHHHhcc-CCHHHHH-------HHHHHHHHhccCccccccccc-c-hHHHHHHHHhcCChHHHHHHH
Q 001733 469 NIKCMAENGLLEPLMHHLNE-GSEEIQM-------EMASYLGEIVLGHDSKINVPG-R-AASTLIRMVHSGNSLTRRIAF 538 (1019)
Q Consensus 469 n~~~i~~~G~i~~Lv~lL~~-~~~~~~~-------~aa~~L~~La~~~~~~~~i~~-~-~i~~Lv~lL~~~~~~~~~~A~ 538 (1019)
.+..+++.|.+..++++++. ....-+. .++....-|...++.-..+.. + .+..++..+++.+......+.
T Consensus 257 Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~ 336 (604)
T KOG4500|consen 257 VKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGS 336 (604)
T ss_pred eeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHH
Confidence 99999999999999999975 2211122 233333334445555555644 3 578888899998889999999
Q ss_pred HHHHHhhcCCcchHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCcccccccccCcccchhhhHHHH
Q 001733 539 KALMQISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNI 618 (1019)
Q Consensus 539 ~aL~~Ls~~~~~~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~L 618 (1019)
-++.|+++.+.++..+++.|.+..|+++|...+...+.-+.+-.++++|+|+.-...++ ..+...|+++.+
T Consensus 337 LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nk---------a~~~~aGvteaI 407 (604)
T KOG4500|consen 337 LAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNK---------AHFAPAGVTEAI 407 (604)
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCch---------hhccccchHHHH
Confidence 99999999999999999999999999999874322233477889999999998765554 456788999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHhCCCCchHHHH-HHHHHcCChHHHHHhhcCCCH-HHHHHHHHHHHHhCcCC-ChhHH
Q 001733 619 IYMLKNSTPDELNVHLIRILQCLTKSPKPMATIV-SVIKETEASYSLLEVINNPHD-ELAVAAIKLLTTLSPYL-GHTLV 695 (1019)
Q Consensus 619 l~LL~~~~~~~v~~~a~~aL~~La~~~~~~~~i~-~~i~~~g~i~~Lv~LL~~~~~-~vr~~A~~~L~~Ls~~~-~~~~~ 695 (1019)
+.+++. ..|.++.....+|..+-.+.+ .+. +....-..+..|+.+..+++- .+--...++|..|-+|. ...+.
T Consensus 408 L~~lk~-~~ppv~fkllgTlrM~~d~qe---~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kdv~ 483 (604)
T KOG4500|consen 408 LLQLKL-ASPPVTFKLLGTLRMIRDSQE---YIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKDVI 483 (604)
T ss_pred HHHHHh-cCCcchHHHHHHHHHHHhchH---HHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhhhH
Confidence 999999 899999999999887755332 111 122223345677777777774 47778888888887652 23444
Q ss_pred HHhhhcCCChhHhhcccCCCCcChHHHHHHHHHHhc
Q 001733 696 ERLCKTRGQPENLIQCPTETIHITEKQAVSAKFLAK 731 (1019)
Q Consensus 696 ~~l~~~~g~i~~LV~lL~~~~~~~~~~~~A~~~L~n 731 (1019)
..+.+. |+|+.+|.++.... ...+..|+-+|+.
T Consensus 484 ~tvpks-g~ik~~Vsm~t~~h--i~mqnEalVal~~ 516 (604)
T KOG4500|consen 484 LTVPKS-GGIKEKVSMFTKNH--INMQNEALVALLS 516 (604)
T ss_pred hhcccc-ccHHHHHHHHHHhh--HHHhHHHHHHHHH
Confidence 555554 89999999987654 3444444444443
No 24
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.47 E-value=2.5e-12 Score=137.18 Aligned_cols=196 Identities=17% Similarity=0.177 Sum_probs=169.6
Q ss_pred HhcCCHHHHHHHhcC-CChhHHHHHHHHHHHhccChhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCC
Q 001733 389 AETMDISILIKLLSS-SHRPVRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNP 467 (1019)
Q Consensus 389 ~~~g~i~~Lv~lL~~-~~~~~r~~Aa~~L~~Ls~~~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~ 467 (1019)
.+.+.++.|+.+|+. .++.+++.|..++.+.+..+.++..|.. .|+++.+..+|. .+++.+++.|+.+|.||+.+.
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~-~Ggi~lI~~lL~--~p~~~vr~~AL~aL~Nls~~~ 85 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRD-LGGISLIGSLLN--DPNPSVREKALNALNNLSVND 85 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHH-cCCHHHHHHHcC--CCChHHHHHHHHHHHhcCCCh
Confidence 567889999999985 6789999999999999999999888865 999999999994 678999999999999999999
Q ss_pred CchHHHHhcCChHHHHHHhccC--CHHHHHHHHHHHHHhccCcccccccccchHHHHHHHHhcCChHHHHHHHHHHHHhh
Q 001733 468 DNIKCMAENGLLEPLMHHLNEG--SEEIQMEMASYLGEIVLGHDSKINVPGRAASTLIRMVHSGNSLTRRIAFKALMQIS 545 (1019)
Q Consensus 468 ~n~~~i~~~G~i~~Lv~lL~~~--~~~~~~~aa~~L~~La~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls 545 (1019)
+|+..+-. +++.+++.+.+. +.++|..++++|.+|+..++.+..+. ..++.++.+|.+|+...|.+++++|.||+
T Consensus 86 en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~-~~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 86 ENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA-NYIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred hhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH-hhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 99988743 688888876554 56899999999999998887766664 47899999999999999999999999999
Q ss_pred cCCcchHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcC
Q 001733 546 SHHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESG 594 (1019)
Q Consensus 546 ~~~~~~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~ 594 (1019)
.++...+.++.++++..++.++.... +..+-..+.....||..+-
T Consensus 163 ~np~~~~~Ll~~q~~~~~~~Lf~~~~----~~~~l~~~l~~~~ni~~~~ 207 (254)
T PF04826_consen 163 ENPDMTRELLSAQVLSSFLSLFNSSE----SKENLLRVLTFFENINENI 207 (254)
T ss_pred cCHHHHHHHHhccchhHHHHHHccCC----ccHHHHHHHHHHHHHHHhh
Confidence 99999999999999999998776542 3477788888899997654
No 25
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.44 E-value=2.1e-10 Score=136.20 Aligned_cols=396 Identities=17% Similarity=0.174 Sum_probs=274.3
Q ss_pred HHHHHHHHHHHHHHHhcccccchHHHhcCChHHHHHHhhcCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHh
Q 001733 322 DRMVLEAIKDLQTVCQRKQYNKVQVRNVGVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLL 401 (1019)
Q Consensus 322 ~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL 401 (1019)
.+....++.-|..+...... ... ..+..+.|...|.++++.+|..++..|.+++..++.....+.+.+.++.++.+|
T Consensus 52 ~e~v~~~~~iL~~~l~~~~~-~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L 128 (503)
T PF10508_consen 52 REQVELICDILKRLLSALSP-DSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCL 128 (503)
T ss_pred hHHHHHHHHHHHHHHhccCH-HHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHH
Confidence 33444555556555554322 111 456788999999999999999999999999866655566677899999999999
Q ss_pred cCCChhHHHHHHHHHHHhccChhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCC-CCchHHHHhcCChH
Q 001733 402 SSSHRPVRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERN-PDNIKCMAENGLLE 480 (1019)
Q Consensus 402 ~~~~~~~r~~Aa~~L~~Ls~~~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~-~~n~~~i~~~G~i~ 480 (1019)
.+++.++...|+.+|.+|+..+...+.+.. .+.+..|..++. ..+..++-.+..++.+++.. ++....+.+.|.++
T Consensus 129 ~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~-~~~~~~L~~l~~--~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~ 205 (503)
T PF10508_consen 129 RDPDLSVAKAAIKALKKLASHPEGLEQLFD-SNLLSKLKSLMS--QSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLD 205 (503)
T ss_pred cCCcHHHHHHHHHHHHHHhCCchhHHHHhC-cchHHHHHHHHh--ccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHH
Confidence 999999999999999999999888877765 677999999985 33567788899999999855 44556667789999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhccCccccccccc-chHHHHHHHHhcC--Ch---H-HHHHHHHHHHHhhcCCcchHH
Q 001733 481 PLMHHLNEGSEEIQMEMASYLGEIVLGHDSKINVPG-RAASTLIRMVHSG--NS---L-TRRIAFKALMQISSHHPSCKI 553 (1019)
Q Consensus 481 ~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~i~~-~~i~~Lv~lL~~~--~~---~-~~~~A~~aL~~Ls~~~~~~~~ 553 (1019)
.++..|.+++.-++.+++.+|..|+..+.+...+.+ |+++.|+.++... ++ . ..-..+....+++...+. .
T Consensus 206 ~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~--~ 283 (503)
T PF10508_consen 206 LLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQ--E 283 (503)
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChH--H
Confidence 999999998888999999999999999999888876 5789999999763 23 1 112233556667765322 1
Q ss_pred HHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCcccccccccCcccchhhhHHHHHHHHcCCCCHHHHHH
Q 001733 554 LVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVH 633 (1019)
Q Consensus 554 l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~ 633 (1019)
+. +..|.+++.++..- ++.....+..|..++..++.+..+...+ ....|. .-..++..+.....+ +..++|..
T Consensus 284 v~--~~~p~~~~~l~~~~-~s~d~~~~~~A~dtlg~igst~~G~~~L-~~~~~~--~~~~~l~~~~~~~~~-~~~~lk~r 356 (503)
T PF10508_consen 284 VL--ELYPAFLERLFSML-ESQDPTIREVAFDTLGQIGSTVEGKQLL-LQKQGP--AMKHVLKAIGDAIKS-GSTELKLR 356 (503)
T ss_pred HH--HHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHHhCCHHHHHHH-Hhhcch--HHHHHHHHHHHHhcC-CchHHHHH
Confidence 11 23455555555321 1123477899999999999876554322 011110 112355566666666 78899999
Q ss_pred HHHHHHHHhCCCCc--hHHH---HHHH---HHcCChH-HHHHhhcCCCHHHHHHHHHHHHHhCcCCChhHHHHhhhcCCC
Q 001733 634 LIRILQCLTKSPKP--MATI---VSVI---KETEASY-SLLEVINNPHDELAVAAIKLLTTLSPYLGHTLVERLCKTRGQ 704 (1019)
Q Consensus 634 a~~aL~~La~~~~~--~~~i---~~~i---~~~g~i~-~Lv~LL~~~~~~vr~~A~~~L~~Ls~~~~~~~~~~l~~~~g~ 704 (1019)
++.+|.++-..+.. ..++ .+.. ...+... .+..+++.|-+++|.++.++|..|+.+. ..+..+...+|.
T Consensus 357 ~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~--Wg~~~i~~~~gf 434 (503)
T PF10508_consen 357 ALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQP--WGQREICSSPGF 434 (503)
T ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCH--HHHHHHHhCccH
Confidence 99999999443332 2222 2211 1223333 6678999999999999999999999653 334445555677
Q ss_pred hhHhhcccCCCCc-ChHHHHHHHHHHhccCC
Q 001733 705 PENLIQCPTETIH-ITEKQAVSAKFLAKLPH 734 (1019)
Q Consensus 705 i~~LV~lL~~~~~-~~~~~~~A~~~L~nL~~ 734 (1019)
++.|+.=-.+.+. ..+.+-..+..|.+.+.
T Consensus 435 ie~lldr~~E~~K~~ke~K~~ii~~l~~~~~ 465 (503)
T PF10508_consen 435 IEYLLDRSTETTKEGKEAKYDIIKALAKSST 465 (503)
T ss_pred HhhhcCCCCCCCHHHHHHHHHHHHHHHhccc
Confidence 7777653333321 22344556666665443
No 26
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.39 E-value=1.1e-11 Score=132.40 Aligned_cols=196 Identities=19% Similarity=0.163 Sum_probs=171.1
Q ss_pred HhcCChHHHHHHhhc-CCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHhcCCChhHHHHHHHHHHHhccChhh
Q 001733 347 RNVGVLPLLTKLLEY-KDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSSHRPVRHESLLLLLELSSTRSL 425 (1019)
Q Consensus 347 ~~~g~i~~Lv~lL~s-~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~~~~ 425 (1019)
.+.+-++.|+.+|+. .|+.+++.|+.+|.+.+ ..+.++..|.+.|+++.+..+|.++++.+|+.|+.+|.+++.+.++
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~a-af~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSA-AFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN 87 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhc-cChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence 466778999999995 58999999999999997 8899999999999999999999999999999999999999999999
Q ss_pred hhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhc
Q 001733 426 CEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIV 505 (1019)
Q Consensus 426 ~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La 505 (1019)
+..| ...|+.+.+...+..-+.+++..++.+|.||+..+++...++ ++++.|+.+|.+|+..++..++.+|.||+
T Consensus 88 ~~~I---k~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 88 QEQI---KMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred HHHH---HHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 9988 346888888765455577889999999999998877776665 47999999999999999999999999999
Q ss_pred cCcccccccc-cchHHHHHHHHhcC-ChHHHHHHHHHHHHhhcCC
Q 001733 506 LGHDSKINVP-GRAASTLIRMVHSG-NSLTRRIAFKALMQISSHH 548 (1019)
Q Consensus 506 ~~~~~~~~i~-~~~i~~Lv~lL~~~-~~~~~~~A~~aL~~Ls~~~ 548 (1019)
.++.....+. ..+.+.++.++... +.++...++....||..+-
T Consensus 163 ~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~ 207 (254)
T PF04826_consen 163 ENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENI 207 (254)
T ss_pred cCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhh
Confidence 9998765554 46889999999875 5677888998899987654
No 27
>PRK09687 putative lyase; Provisional
Probab=99.37 E-value=8.5e-11 Score=128.39 Aligned_cols=254 Identities=17% Similarity=0.066 Sum_probs=197.2
Q ss_pred ChHHHHHHhhcCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHhcCCChhHHHHHHHHHHHhccChhhhhhhh
Q 001733 351 VLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSSHRPVRHESLLLLLELSSTRSLCEKIG 430 (1019)
Q Consensus 351 ~i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~~~~~~~i~ 430 (1019)
.++.|..+|.+.+..+|..|+.+|..+. ...+++.+..++.++++.+|..|+.+|..|...+..
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~-----------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~----- 87 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRG-----------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC----- 87 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcC-----------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----
Confidence 4788999999999999999999998874 245678888999999999999999999998543221
Q ss_pred cccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCccc
Q 001733 431 SIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDS 510 (1019)
Q Consensus 431 ~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~ 510 (1019)
...+++.|..++. ...++.++..|+.+|.+++....+. ..-+++.+...+.+.+..++..++.+|..+..
T Consensus 88 -~~~a~~~L~~l~~-~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~---- 157 (280)
T PRK09687 88 -QDNVFNILNNLAL-EDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND---- 157 (280)
T ss_pred -hHHHHHHHHHHHh-cCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC----
Confidence 1346788888754 4567899999999999986433211 11245667788888899999999999974421
Q ss_pred ccccccchHHHHHHHHhcCChHHHHHHHHHHHHhhcCCcchHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHH
Q 001733 511 KINVPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANI 590 (1019)
Q Consensus 511 ~~~i~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L 590 (1019)
..+++.|+.+|.+.++.++..|+.+|..+....+ .+++.|+.+|...+ ..++..|...|..+
T Consensus 158 -----~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~--------~~~~~L~~~L~D~~-----~~VR~~A~~aLg~~ 219 (280)
T PRK09687 158 -----EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP--------DIREAFVAMLQDKN-----EEIRIEAIIGLALR 219 (280)
T ss_pred -----HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH--------HHHHHHHHHhcCCC-----hHHHHHHHHHHHcc
Confidence 2479999999999999999999999999944333 46788989886542 58888888888763
Q ss_pred HhcCCCcccccccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhc-
Q 001733 591 LESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVIN- 669 (1019)
Q Consensus 591 ~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~- 669 (1019)
- ...+++.|+..|.. ++ ++..++.+|..+.. ..+++.|..++.
T Consensus 220 ~-------------------~~~av~~Li~~L~~-~~--~~~~a~~ALg~ig~--------------~~a~p~L~~l~~~ 263 (280)
T PRK09687 220 K-------------------DKRVLSVLIKELKK-GT--VGDLIIEAAGELGD--------------KTLLPVLDTLLYK 263 (280)
T ss_pred C-------------------ChhHHHHHHHHHcC-Cc--hHHHHHHHHHhcCC--------------HhHHHHHHHHHhh
Confidence 1 24689999999987 44 67778888887754 136788999997
Q ss_pred CCCHHHHHHHHHHHH
Q 001733 670 NPHDELAVAAIKLLT 684 (1019)
Q Consensus 670 ~~~~~vr~~A~~~L~ 684 (1019)
+++..++..|.++|.
T Consensus 264 ~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 264 FDDNEIITKAIDKLK 278 (280)
T ss_pred CCChhHHHHHHHHHh
Confidence 888999999988874
No 28
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.35 E-value=2e-09 Score=130.41 Aligned_cols=501 Identities=16% Similarity=0.131 Sum_probs=330.8
Q ss_pred CHHHHHHHHHHHHHHHhcccccchHHHhcCChHHHHHHhhcCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHH
Q 001733 321 SDRMVLEAIKDLQTVCQRKQYNKVQVRNVGVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKL 400 (1019)
Q Consensus 321 ~~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~l 400 (1019)
+...+.+++.+|-.+...+.... -+.+..++++.+.+...+.-+--.+..+...+++.-.. ++..+.+=
T Consensus 19 ~~~~~~~~l~kli~~~~~G~~~~------~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l-----~~n~l~kd 87 (526)
T PF01602_consen 19 DISKKKEALKKLIYLMMLGYDIS------FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLIL-----IINSLQKD 87 (526)
T ss_dssp HHHHHHHHHHHHHHHHHTT---G------STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHH-----HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCCCc------hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHH-----HHHHHHHh
Confidence 45677888888776665544322 46788899999999999999888888887555552222 46778888
Q ss_pred hcCCChhHHHHHHHHHHHhccChhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHHHhcCChH
Q 001733 401 LSSSHRPVRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLE 480 (1019)
Q Consensus 401 L~~~~~~~r~~Aa~~L~~Ls~~~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~i~ 480 (1019)
|.++++.+|..|+.+|.++. .++..+ -.++.+.+++. +.++.+++.|+.++..+.....+ .+-.. .++
T Consensus 88 l~~~n~~~~~lAL~~l~~i~-~~~~~~------~l~~~v~~ll~--~~~~~VRk~A~~~l~~i~~~~p~--~~~~~-~~~ 155 (526)
T PF01602_consen 88 LNSPNPYIRGLALRTLSNIR-TPEMAE------PLIPDVIKLLS--DPSPYVRKKAALALLKIYRKDPD--LVEDE-LIP 155 (526)
T ss_dssp HCSSSHHHHHHHHHHHHHH--SHHHHH------HHHHHHHHHHH--SSSHHHHHHHHHHHHHHHHHCHC--CHHGG-HHH
T ss_pred hcCCCHHHHHHHHhhhhhhc-ccchhh------HHHHHHHHHhc--CCchHHHHHHHHHHHHHhccCHH--HHHHH-HHH
Confidence 89999999999999999987 333333 34677788885 56789999999999999753222 12222 689
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhccCcccccccccchHHHHHHHHhcCChHHHHHHHHHHHHhhcCCcchHHHHHcCcH
Q 001733 481 PLMHHLNEGSEEIQMEMASYLGEIVLGHDSKINVPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIV 560 (1019)
Q Consensus 481 ~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~~~~l~~~G~v 560 (1019)
.+.++|.+.++.++..|+.++..+-..++.-..+....+..|.+++...++..+...++.|..++....... -....+
T Consensus 156 ~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~--~~~~~i 233 (526)
T PF01602_consen 156 KLKQLLSDKDPSVVSAALSLLSEIKCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDA--DKNRII 233 (526)
T ss_dssp HHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHH--HHHHHH
T ss_pred HHhhhccCCcchhHHHHHHHHHHHccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhh--hHHHHH
Confidence 999999999999999999999999112221113333455666677778899999999999999887654322 114577
Q ss_pred HHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCcccccccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 001733 561 QVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQC 640 (1019)
Q Consensus 561 ~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~ 640 (1019)
+.+..++.+.+ ..+.-.|..++..+..... ....+++.|..+|.+ .++.++..++..|..
T Consensus 234 ~~l~~~l~s~~-----~~V~~e~~~~i~~l~~~~~--------------~~~~~~~~L~~lL~s-~~~nvr~~~L~~L~~ 293 (526)
T PF01602_consen 234 EPLLNLLQSSS-----PSVVYEAIRLIIKLSPSPE--------------LLQKAINPLIKLLSS-SDPNVRYIALDSLSQ 293 (526)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHHHHHHHSSSHH--------------HHHHHHHHHHHHHTS-SSHHHHHHHHHHHHH
T ss_pred HHHHHHhhccc-----cHHHHHHHHHHHHhhcchH--------------HHHhhHHHHHHHhhc-ccchhehhHHHHHHH
Confidence 88888887553 4666777777776544321 236789999999997 999999999999999
Q ss_pred HhCCCCchHHHHHHHHHcCChHHHHHhhc-CCCHHHHHHHHHHHHHhCcCCChhHHHHhhhcCCChhHhhcccCCCCcCh
Q 001733 641 LTKSPKPMATIVSVIKETEASYSLLEVIN-NPHDELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCPTETIHIT 719 (1019)
Q Consensus 641 La~~~~~~~~i~~~i~~~g~i~~Lv~LL~-~~~~~vr~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~LV~lL~~~~~~~ 719 (1019)
++.... ..+. .....+..+. +++..+|..++.+|..++.. ..+ . ..++.|...+...+ +.
T Consensus 294 l~~~~~------~~v~---~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~--~n~-~------~Il~eL~~~l~~~~-d~ 354 (526)
T PF01602_consen 294 LAQSNP------PAVF---NQSLILFFLLYDDDPSIRKKALDLLYKLANE--SNV-K------EILDELLKYLSELS-DP 354 (526)
T ss_dssp HCCHCH------HHHG---THHHHHHHHHCSSSHHHHHHHHHHHHHH--H--HHH-H------HHHHHHHHHHHHC---H
T ss_pred hhcccc------hhhh---hhhhhhheecCCCChhHHHHHHHHHhhcccc--cch-h------hHHHHHHHHHHhcc-ch
Confidence 988541 1222 2223334444 88899999999999999952 122 1 23456666663332 34
Q ss_pred HHHHHHHHHHhccCCCChhhHHHHHhCCChHHHHHHHHhhhccCCCccchhhhHHHHHHHHHHHHhcCCCchhHHHHHHh
Q 001733 720 EKQAVSAKFLAKLPHQNLTLNLALSARNVVPTILQTINLIQRSGTRTSRYASAYLEGLIGILVRFTTTLYEPQILFLART 799 (1019)
Q Consensus 720 ~~~~~A~~~L~nL~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~lt~~~~~~~~~~~~~~ 799 (1019)
+.+..++..|+.++...+....+ .+..+++++... ...+...++..+..+... +|+.+..+
T Consensus 355 ~~~~~~i~~I~~la~~~~~~~~~-----~v~~l~~ll~~~----------~~~~~~~~~~~i~~ll~~--~~~~~~~~-- 415 (526)
T PF01602_consen 355 DFRRELIKAIGDLAEKFPPDAEW-----YVDTLLKLLEIS----------GDYVSNEIINVIRDLLSN--NPELREKI-- 415 (526)
T ss_dssp HHHHHHHHHHHHHHHHHGSSHHH-----HHHHHHHHHHCT----------GGGCHCHHHHHHHHHHHH--STTTHHHH--
T ss_pred hhhhhHHHHHHHHHhccCchHHH-----HHHHHHHhhhhc----------cccccchHHHHHHHHhhc--ChhhhHHH--
Confidence 68888888888776422222222 245667776531 112233344445555432 55555433
Q ss_pred CCchHHHHHHHhcCCcHHHHHHHHHHHhhhcccCCcCCCCCCcCCcccccccccCcccccCCCCCCCCCCCcccCCcccc
Q 001733 800 HNFTSVFTELLMKTSCDEVQKLAAIGLENLSSESINLSKPPQIKSKKFMKFFSLPKSLSVGSSKKKSVSLCPVHRGACSS 879 (1019)
Q Consensus 800 ~g~i~~Lv~LL~~~~~~~vk~~AA~aL~nLs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~v~~~~cs~ 879 (1019)
+..|++++.+..++++++.++|.++..+....+..
T Consensus 416 ---l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~------------------------------------------ 450 (526)
T PF01602_consen 416 ---LKKLIELLEDISSPEALAAAIWILGEYGELIENTE------------------------------------------ 450 (526)
T ss_dssp ---HHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTT------------------------------------------
T ss_pred ---HHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccc------------------------------------------
Confidence 67788888875788999999999998875442100
Q ss_pred CccchhhhccchHHHHhhhccCchhhHHHHHHHHHhhhccCcchhhHHHHHHhccchHHHHHHHh-hcChhhHHHHHHHH
Q 001733 880 QNTFCLIDAKAVDRLLACLYHENVEVVEAALSALCTLLDEKVDVDKSVSMLSEVNAIQHVLNVVK-EHRQEVLQQKSFWM 958 (1019)
Q Consensus 880 ~~~~~Lv~~gai~~Lv~lL~~~d~~v~~~Al~AL~~L~~d~~~~~~~~~~i~~~~~i~~l~~lL~-~~~~~~~~~~A~~a 958 (1019)
.-...+..+++.....++.++...+.++..+..-....+. .. ..++.+.++.. ++.+.++|++|...
T Consensus 451 ------~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~-~~-----~i~~~~~~~~~~~s~~~evr~Ra~~y 518 (526)
T PF01602_consen 451 ------SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEV-QN-----EILQFLLSLATEDSSDPEVRDRAREY 518 (526)
T ss_dssp ------HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTH-HH-----HHHHHHHCHHHHS-SSHHHHHHHHHH
T ss_pred ------cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhh-HH-----HHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 0012356667777778889999999999998854321000 01 11223333333 16789999999988
Q ss_pred HHH
Q 001733 959 IER 961 (1019)
Q Consensus 959 L~~ 961 (1019)
+.-
T Consensus 519 ~~l 521 (526)
T PF01602_consen 519 LRL 521 (526)
T ss_dssp HHH
T ss_pred HHH
Confidence 743
No 29
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.32 E-value=7.1e-10 Score=126.52 Aligned_cols=489 Identities=14% Similarity=0.119 Sum_probs=290.3
Q ss_pred CCChHHHHHHHHHHHHhc-CCCCchHHHHhcCChHHHHHHhc--cCCHHHHHHHHHHHHHhcc-Ccccccccccc-hHHH
Q 001733 447 SIDVFAAEIADQILRNLE-RNPDNIKCMAENGLLEPLMHHLN--EGSEEIQMEMASYLGEIVL-GHDSKINVPGR-AAST 521 (1019)
Q Consensus 447 ~~~~~~~~~A~~aL~nLs-~~~~n~~~i~~~G~i~~Lv~lL~--~~~~~~~~~aa~~L~~La~-~~~~~~~i~~~-~i~~ 521 (1019)
..+|+..-.|..-..|++ .+++++..+.+.|+++.|..++. +++++.+...+.++..+.. .......+.+. .++.
T Consensus 20 ~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~ 99 (678)
T KOG1293|consen 20 HLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLK 99 (678)
T ss_pred cCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHH
Confidence 346666666777777776 67888888999999999999987 4567777677777777666 44455566664 6899
Q ss_pred HHHHHhcCC-hHHHHHHHHHHHHhhcCCcch---HHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCc
Q 001733 522 LIRMVHSGN-SLTRRIAFKALMQISSHHPSC---KILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEH 597 (1019)
Q Consensus 522 Lv~lL~~~~-~~~~~~A~~aL~~Ls~~~~~~---~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~ 597 (1019)
|+++|.+.+ ..+++..++++..+-...+.. .......++..+..++. ... ....+.-+. +.+.+.+...+
T Consensus 100 Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s-~~l----k~~~~l~~~-~~a~~s~~~~h 173 (678)
T KOG1293|consen 100 LLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYS-IEL----KYISRLDVS-RAAHLSSTKDH 173 (678)
T ss_pred HHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHh-hhh----hhhhhhhhh-hhccccccchh
Confidence 999999887 789999999999998766432 22333445555544444 110 122233333 33333333333
Q ss_pred ccccccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHHHHH---HHhCC-CCchHHHHHHHHHcCChH--HHHHhhcCC
Q 001733 598 HSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQ---CLTKS-PKPMATIVSVIKETEASY--SLLEVINNP 671 (1019)
Q Consensus 598 ~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~---~La~~-~~~~~~i~~~i~~~g~i~--~Lv~LL~~~ 671 (1019)
+ ..+...++.+++..++.. .+...|..|...+. .+..+ +..........+..|..+ .+-+++.++
T Consensus 174 q--------~Il~Na~i~ekI~~l~~~-~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~ 244 (678)
T KOG1293|consen 174 Q--------LILCNAGILEKINILLMY-LSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDP 244 (678)
T ss_pred h--------heeccccchhhHHHHHHh-hhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCC
Confidence 3 245567778887777776 78889999999998 54443 334445556777767766 455888888
Q ss_pred CHHHHHHHHHHHHHhCcCCCh---hH-HHHhhhcCC--C---hhHhhcccCCCCcChHHHHHHHHHHhccCCCChhhHHH
Q 001733 672 HDELAVAAIKLLTTLSPYLGH---TL-VERLCKTRG--Q---PENLIQCPTETIHITEKQAVSAKFLAKLPHQNLTLNLA 742 (1019)
Q Consensus 672 ~~~vr~~A~~~L~~Ls~~~~~---~~-~~~l~~~~g--~---i~~LV~lL~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~ 742 (1019)
+...+..++.++-++.....+ .. ...+... | . ...++ +...+. ...-..++.+.+.+..--..+...
T Consensus 245 ~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dm-gd~~i~q~~~i~-l~~~P~--~s~l~~~~~l~c~~a~~~sklq~~ 320 (678)
T KOG1293|consen 245 DFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDM-GDSLIVQYNCIV-LMNDPG--LSTLDHTNVLFCILARFASKLQLP 320 (678)
T ss_pred CccHHHHHHHHHHHHHhccccccccccceeeccC-chHHHHHHhhhe-eecCCc--eeehhhhhhhHHHHHHHHHhhhhH
Confidence 887777777776666532211 00 0111100 0 0 01111 111111 011111222222222111122333
Q ss_pred HHhCCChHHHHHHHHhhhccCCCccchhhhHHHHHHHHHHHHhcCCCchhHHHHHHhCCchHHHHHHHhcCCcHHHHHHH
Q 001733 743 LSARNVVPTILQTINLIQRSGTRTSRYASAYLEGLIGILVRFTTTLYEPQILFLARTHNFTSVFTELLMKTSCDEVQKLA 822 (1019)
Q Consensus 743 l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~lt~~~~~~~~~~~~~~~g~i~~Lv~LL~~~~~~~vk~~A 822 (1019)
-.+...++.+.+++..+.+-... ....-.+.-+-..++.++..+. .-..++.+.+.-....+..+... .+....+.|
T Consensus 321 ~~e~~~~~~~~ellf~~~sl~a~-~~~~~~i~l~e~~i~~~~~~~~-~i~~~k~~l~~~t~~~l~~~~~~-kd~~~~aaa 397 (678)
T KOG1293|consen 321 QHEEATLKTTTELLFICASLAAS-DEKYRLILLNETLILNHLEYGL-EISLKKEILETTTESHLMCLPPI-KDHDFVAAA 397 (678)
T ss_pred HhhhhhhhhHHHHHHHHHHHhhc-chhhhHHHhhhhhhhhhhhhhc-chhHHHHHHHHHHHHHHcccccc-ccHHHHHHH
Confidence 34566777777777643221000 0001111111112222333322 22333334433334444444444 566666666
Q ss_pred HHHHhhhcccCCcCCCCCCcCCcccccccccCcccccCCCCCCCCCCCcccCCccccCccchhhhccchHHHHhhhccCc
Q 001733 823 AIGLENLSSESINLSKPPQIKSKKFMKFFSLPKSLSVGSSKKKSVSLCPVHRGACSSQNTFCLIDAKAVDRLLACLYHEN 902 (1019)
Q Consensus 823 A~aL~nLs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~v~~~~cs~~~~~~Lv~~gai~~Lv~lL~~~d 902 (1019)
+..+.+++.....|+. . +-...++.|||++|.+++
T Consensus 398 ~l~~~s~srsV~aL~t-------------------------------------------g--~~~~dv~~plvqll~dp~ 432 (678)
T KOG1293|consen 398 LLCLKSFSRSVSALRT-------------------------------------------G--LKRNDVAQPLVQLLMDPE 432 (678)
T ss_pred HHHHHHHHHHHHHHHc-------------------------------------------C--CccchhHHHHHHHhhCcc
Confidence 6666666654422210 0 113567999999999999
Q ss_pred hhhHHHHHHHHHhhhccCcchhhHHHHHHhccchHHHHHHHhhcChhhHHHHHHHHHHHHHhhCCccccccccccccchH
Q 001733 903 VEVVEAALSALCTLLDEKVDVDKSVSMLSEVNAIQHVLNVVKEHRQEVLQQKSFWMIERFLVKGGNKQASDISQDRLLPA 982 (1019)
Q Consensus 903 ~~v~~~Al~AL~~L~~d~~~~~~~~~~i~~~~~i~~l~~lL~~~~~~~~~~~A~~aL~~i~~~~~~~~~~~~~~~~~~~~ 982 (1019)
..|...+++||+||+.+-.+ ...-+.+.|||+.+++.+. ..+.+.+.++.|+|....-..+++...+.-.. ..-.
T Consensus 433 ~~i~~~~lgai~NlVmefs~---~kskfl~~ngId~l~s~~~-~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~k-i~a~ 507 (678)
T KOG1293|consen 433 IMIMGITLGAICNLVMEFSN---LKSKFLRNNGIDILESMLT-DPDFNSRANSLWVLRHLMFNCDEEEKFQLLAK-IPAN 507 (678)
T ss_pred hhHHHHHHHHHHHHHhhccc---HHHHHHHcCcHHHHHHHhc-CCCchHHHHHHHHHHHHHhcchHHHHHHHHHH-hhHH
Confidence 99999999999999987553 3446778999999999998 89999999999999876554333333322111 1113
Q ss_pred HHHHHhhcCCchhhHHHHHHHHHhc
Q 001733 983 TLVSAFHHGDVNTRQMAEKILRHLN 1007 (1019)
Q Consensus 983 ~Lv~ll~~~~~~~~~~Aa~~L~~L~ 1007 (1019)
-|+++-.+.+..+++.+-.+|++|-
T Consensus 508 ~i~~l~nd~d~~Vqeq~fqllRNl~ 532 (678)
T KOG1293|consen 508 LILDLINDPDWAVQEQCFQLLRNLT 532 (678)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhh
Confidence 4677788888999999999999874
No 30
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=1.6e-08 Score=122.70 Aligned_cols=491 Identities=18% Similarity=0.182 Sum_probs=309.1
Q ss_pred CHHHHHHHHHHHHHHHhcccccchHHHhcCChHHHHHHhhc-CCHHHHHHHHHHHHhhcc-----CChhHHHHHHhcCCH
Q 001733 321 SDRMVLEAIKDLQTVCQRKQYNKVQVRNVGVLPLLTKLLEY-KDRNVRCAAMELLRQLVV-----EDDEGKEMIAETMDI 394 (1019)
Q Consensus 321 ~~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~s-~~~~~~~~Al~~L~~La~-----~~~~~k~~I~~~g~i 394 (1019)
+.+.+.+|=+.+..+.+..+ ..|.|..++.. .|+++|.-|+-.++.+.. .+.+.|..|.
T Consensus 17 Dn~vr~~Ae~~l~~~~~~~~----------~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~sik----- 81 (1075)
T KOG2171|consen 17 DNEVRRQAEEALETLAKTEP----------LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIK----- 81 (1075)
T ss_pred CchHHHHHHHHHHHhhcccc----------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHH-----
Confidence 33445555555654444322 68889998875 589999999988888753 3455555553
Q ss_pred HHHHHHhcC-CChhHHHHHHHHHHHhccChhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHH
Q 001733 395 SILIKLLSS-SHRPVRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCM 473 (1019)
Q Consensus 395 ~~Lv~lL~~-~~~~~r~~Aa~~L~~Ls~~~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i 473 (1019)
..|+..+.+ ..+.+|..-+.++.+++.+.--. .-++.++.|+.-. .+.++..++.|..+|+++...-.|..
T Consensus 82 s~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e----~WPell~~L~q~~--~S~~~~~rE~al~il~s~~~~~~~~~-- 153 (1075)
T KOG2171|consen 82 SSLLEIIQSETEPSVRHKLADVIAEIARNDLPE----KWPELLQFLFQST--KSPNPSLRESALLILSSLPETFGNTL-- 153 (1075)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHhcccc----chHHHHHHHHHHh--cCCCcchhHHHHHHHHhhhhhhcccc--
Confidence 334444444 45678888888888887643111 1255566666665 56788899999999999975433321
Q ss_pred HhcCChHHHHH----HhccCCHHHHHHHHHHHHHhccCc-cccccccc--chHHHHHHHH----hcCChHHHHHHHHHHH
Q 001733 474 AENGLLEPLMH----HLNEGSEEIQMEMASYLGEIVLGH-DSKINVPG--RAASTLIRMV----HSGNSLTRRIAFKALM 542 (1019)
Q Consensus 474 ~~~G~i~~Lv~----lL~~~~~~~~~~aa~~L~~La~~~-~~~~~i~~--~~i~~Lv~lL----~~~~~~~~~~A~~aL~ 542 (1019)
.+.++.+.. -+.+.+..++..++.++...+... .++..... ..+|.++..+ ..++......++.+|-
T Consensus 154 --~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~ 231 (1075)
T KOG2171|consen 154 --QPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALI 231 (1075)
T ss_pred --chhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHH
Confidence 233444444 455556569999999999988754 34444433 2467676655 4467777788888888
Q ss_pred HhhcCCcc--hHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCcccccccccCcccchhhhHHHHHH
Q 001733 543 QISSHHPS--CKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIY 620 (1019)
Q Consensus 543 ~Ls~~~~~--~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~ 620 (1019)
.|....+. +..+. .++..-+++..+... ...+|..|..+|..++.......+. ....-...++.++.
T Consensus 232 El~e~~pk~l~~~l~--~ii~~~l~Ia~n~~l---~~~~R~~ALe~ivs~~e~Ap~~~k~------~~~~~~~lv~~~l~ 300 (1075)
T KOG2171|consen 232 ELLESEPKLLRPHLS--QIIQFSLEIAKNKEL---ENSIRHLALEFLVSLSEYAPAMCKK------LALLGHTLVPVLLA 300 (1075)
T ss_pred HHHhhchHHHHHHHH--HHHHHHHHHhhcccc---cHHHHHHHHHHHHHHHHhhHHHhhh------chhhhccHHHHHHH
Confidence 88866543 22222 244445554444432 3588999999998888763222111 11122445666666
Q ss_pred HHcCC-CC--------------HHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHH
Q 001733 621 MLKNS-TP--------------DELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTT 685 (1019)
Q Consensus 621 LL~~~-~~--------------~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~~vr~~A~~~L~~ 685 (1019)
++..- .+ ..-...|.++|-.++.+-.+ ..+.- -.++.+-.+|.+++..-|.+++.+|+.
T Consensus 301 ~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g-~~v~p-----~~~~~l~~~l~S~~w~~R~AaL~Als~ 374 (1075)
T KOG2171|consen 301 MMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGG-KQVLP-----PLFEALEAMLQSTEWKERHAALLALSV 374 (1075)
T ss_pred hcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCCh-hhehH-----HHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 65431 01 11345677888888776554 22111 223455578899999999999999999
Q ss_pred hCcCCChhHHHHhhhcCCChhHhhcccCCCCcChHHHHHHHHHHhccCCCChhhHHHHHhCCChHHHHHHHHhhhccCCC
Q 001733 686 LSPYLGHTLVERLCKTRGQPENLIQCPTETIHITEKQAVSAKFLAKLPHQNLTLNLALSARNVVPTILQTINLIQRSGTR 765 (1019)
Q Consensus 686 Ls~~~~~~~~~~l~~~~g~i~~LV~lL~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~ 765 (1019)
++.++.+.+...+. ..++..+..|.++. +.+|.+|+-+++-+..+-
T Consensus 375 i~EGc~~~m~~~l~---~Il~~Vl~~l~Dph--prVr~AA~naigQ~stdl----------------------------- 420 (1075)
T KOG2171|consen 375 IAEGCSDVMIGNLP---KILPIVLNGLNDPH--PRVRYAALNAIGQMSTDL----------------------------- 420 (1075)
T ss_pred HHcccHHHHHHHHH---HHHHHHHhhcCCCC--HHHHHHHHHHHHhhhhhh-----------------------------
Confidence 99988776666554 56777788887776 588988888888876511
Q ss_pred ccchhhhHHHHHHHHHHHHhcCCCchhHHHHHHhCCchHHHHHHHhcCCcHHHHHHHHHHHhhhcccCCcCCCCCCcCCc
Q 001733 766 TSRYASAYLEGLIGILVRFTTTLYEPQILFLARTHNFTSVFTELLMKTSCDEVQKLAAIGLENLSSESINLSKPPQIKSK 845 (1019)
Q Consensus 766 ~~~~~~~~~e~a~~aL~~lt~~~~~~~~~~~~~~~g~i~~Lv~LL~~~~~~~vk~~AA~aL~nLs~~~~~l~~~~~~~~~ 845 (1019)
-|+.++... .-++|.|+..+.+.++++|+..||.||-|++.... ++
T Consensus 421 ------------------------~p~iqk~~~-e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~---------~~ 466 (1075)
T KOG2171|consen 421 ------------------------QPEIQKKHH-ERLPPALIALLDSTQNVRVQAHAAAALVNFSEECD---------KS 466 (1075)
T ss_pred ------------------------cHHHHHHHH-HhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCc---------HH
Confidence 112222111 34577889999887899999999999999987652 11
Q ss_pred ccccccccCcccccCCCCCCCCCCCcccCCccccCccchhhhccchH-HHHhhhccCchhhHHHHHHHHHhhhccCc-ch
Q 001733 846 KFMKFFSLPKSLSVGSSKKKSVSLCPVHRGACSSQNTFCLIDAKAVD-RLLACLYHENVEVVEAALSALCTLLDEKV-DV 923 (1019)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~~~~~~~c~v~~~~cs~~~~~~Lv~~gai~-~Lv~lL~~~d~~v~~~Al~AL~~L~~d~~-~~ 923 (1019)
.+-+.+ -+.+. .|.-++.++.+.|++.|+.||...+.... .+
T Consensus 467 ~l~pYL------------------------------------d~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F 510 (1075)
T KOG2171|consen 467 ILEPYL------------------------------------DGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKF 510 (1075)
T ss_pred HHHHHH------------------------------------HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhh
Confidence 111111 12344 33335567889999999999999995432 12
Q ss_pred hhHHHHHHhccchHHHHHHHhhcChhhHHHHHHHHHHHH
Q 001733 924 DKSVSMLSEVNAIQHVLNVVKEHRQEVLQQKSFWMIERF 962 (1019)
Q Consensus 924 ~~~~~~i~~~~~i~~l~~lL~~~~~~~~~~~A~~aL~~i 962 (1019)
.++.+.+ ++.|.++|+...+.+.++-....++.+
T Consensus 511 ~pY~d~~-----Mp~L~~~L~n~~~~d~r~LrgktmEci 544 (1075)
T KOG2171|consen 511 IPYFDRL-----MPLLKNFLQNADDKDLRELRGKTMECL 544 (1075)
T ss_pred HhHHHHH-----HHHHHHHHhCCCchhhHHHHhhHHHHH
Confidence 2332222 355777787333356665555544444
No 31
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.30 E-value=4.6e-10 Score=142.64 Aligned_cols=276 Identities=18% Similarity=0.102 Sum_probs=213.9
Q ss_pred cCChHHHHHHhhcCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHhcCCChhHHHHHHHHHHHhccChhhhhh
Q 001733 349 VGVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSSHRPVRHESLLLLLELSSTRSLCEK 428 (1019)
Q Consensus 349 ~g~i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~~~~~~~ 428 (1019)
.+.++.|+..|.++++.+|..|+..|..+. ..++++.|+..|.+++..+|..|+.+|..+...
T Consensus 620 ~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~-----------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~------ 682 (897)
T PRK13800 620 APSVAELAPYLADPDPGVRRTAVAVLTETT-----------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEV------ 682 (897)
T ss_pred chhHHHHHHHhcCCCHHHHHHHHHHHhhhc-----------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc------
Confidence 446789999999999999999999998774 345789999999999999999999999877321
Q ss_pred hhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCc
Q 001733 429 IGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGH 508 (1019)
Q Consensus 429 i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~ 508 (1019)
....+.|..+|. ++|+.++..|+.+|..+.. +-.+.|+..|.+.++.++..++.+|..+-
T Consensus 683 ----~~~~~~L~~~L~--~~d~~VR~~A~~aL~~~~~-----------~~~~~l~~~L~D~d~~VR~~Av~aL~~~~--- 742 (897)
T PRK13800 683 ----LPPAPALRDHLG--SPDPVVRAAALDVLRALRA-----------GDAALFAAALGDPDHRVRIEAVRALVSVD--- 742 (897)
T ss_pred ----cCchHHHHHHhc--CCCHHHHHHHHHHHHhhcc-----------CCHHHHHHHhcCCCHHHHHHHHHHHhccc---
Confidence 123356777774 5788999999999887642 23457888999999999999999998651
Q ss_pred ccccccccchHHHHHHHHhcCChHHHHHHHHHHHHhhcCCcchHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHH
Q 001733 509 DSKINVPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILA 588 (1019)
Q Consensus 509 ~~~~~i~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~ 588 (1019)
..+.|..++.+.++.++..++.+|..+..... +.++.|..++.+.. ..++..|+..|.
T Consensus 743 ---------~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~--------~~~~~L~~ll~D~d-----~~VR~aA~~aLg 800 (897)
T PRK13800 743 ---------DVESVAGAATDENREVRIAVAKGLATLGAGGA--------PAGDAVRALTGDPD-----PLVRAAALAALA 800 (897)
T ss_pred ---------CcHHHHHHhcCCCHHHHHHHHHHHHHhccccc--------hhHHHHHHHhcCCC-----HHHHHHHHHHHH
Confidence 13567788999999999999999999876432 34778888776542 578888888887
Q ss_pred HHHhcCCCcccccccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhh
Q 001733 589 NILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVI 668 (1019)
Q Consensus 589 ~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL 668 (1019)
.+... ...+..++..|.. .++.+|..|+.+|..+.. ...++.|+.+|
T Consensus 801 ~~g~~------------------~~~~~~l~~aL~d-~d~~VR~~Aa~aL~~l~~--------------~~a~~~L~~~L 847 (897)
T PRK13800 801 ELGCP------------------PDDVAAATAALRA-SAWQVRQGAARALAGAAA--------------DVAVPALVEAL 847 (897)
T ss_pred hcCCc------------------chhHHHHHHHhcC-CChHHHHHHHHHHHhccc--------------cchHHHHHHHh
Confidence 75321 1234567888988 899999999999987743 13468899999
Q ss_pred cCCCHHHHHHHHHHHHHhCcCCChhHHHHhhhcCCChhHhhcccCCCCcChHHHHHHHHHHh
Q 001733 669 NNPHDELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCPTETIHITEKQAVSAKFLA 730 (1019)
Q Consensus 669 ~~~~~~vr~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~LV~lL~~~~~~~~~~~~A~~~L~ 730 (1019)
.+++..||..|+++|..+.. + ....+.|...+++.+ .+++..|..+|.
T Consensus 848 ~D~~~~VR~~A~~aL~~~~~--~----------~~a~~~L~~al~D~d--~~Vr~~A~~aL~ 895 (897)
T PRK13800 848 TDPHLDVRKAAVLALTRWPG--D----------PAARDALTTALTDSD--ADVRAYARRALA 895 (897)
T ss_pred cCCCHHHHHHHHHHHhccCC--C----------HHHHHHHHHHHhCCC--HHHHHHHHHHHh
Confidence 99999999999999988631 1 124566777777665 689999988775
No 32
>PRK09687 putative lyase; Provisional
Probab=99.25 E-value=1.1e-09 Score=119.77 Aligned_cols=255 Identities=13% Similarity=0.043 Sum_probs=196.0
Q ss_pred CCHHHHHHHhcCCChhHHHHHHHHHHHhccChhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchH
Q 001733 392 MDISILIKLLSSSHRPVRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIK 471 (1019)
Q Consensus 392 g~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~ 471 (1019)
-.++.|+..|.+.+..+|..|+..|..+. ...+++.+..++ .++++.++..|+.+|..|-..+..
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~-----------~~~~~~~l~~ll--~~~d~~vR~~A~~aLg~lg~~~~~-- 87 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRG-----------GQDVFRLAIELC--SSKNPIERDIGADILSQLGMAKRC-- 87 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcC-----------cchHHHHHHHHH--hCCCHHHHHHHHHHHHhcCCCccc--
Confidence 36899999999999999999999998763 256778888887 467899999999999987543221
Q ss_pred HHHhcCChHHHHHH-hccCCHHHHHHHHHHHHHhccCcccccccccchHHHHHHHHhcCChHHHHHHHHHHHHhhcCCcc
Q 001733 472 CMAENGLLEPLMHH-LNEGSEEIQMEMASYLGEIVLGHDSKINVPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPS 550 (1019)
Q Consensus 472 ~i~~~G~i~~Lv~l-L~~~~~~~~~~aa~~L~~La~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~ 550 (1019)
..-+++.|..+ +.+.++.++..++.+|+.++...... ...++..+...+.+.++.++..++.+|..+..
T Consensus 88 ---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~---~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~---- 157 (280)
T PRK09687 88 ---QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY---SPKIVEQSQITAFDKSTNVRFAVAFALSVIND---- 157 (280)
T ss_pred ---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc---chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC----
Confidence 12356788877 56788999999999999986532111 11356778888888899999999999976653
Q ss_pred hHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCcccccccccCcccchhhhHHHHHHHHcCCCCHHH
Q 001733 551 CKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDEL 630 (1019)
Q Consensus 551 ~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v 630 (1019)
..+++.|+.+|.+.. ..++..|+.+|..+... ...+++.|+.+|.. .++.+
T Consensus 158 ------~~ai~~L~~~L~d~~-----~~VR~~A~~aLg~~~~~-----------------~~~~~~~L~~~L~D-~~~~V 208 (280)
T PRK09687 158 ------EAAIPLLINLLKDPN-----GDVRNWAAFALNSNKYD-----------------NPDIREAFVAMLQD-KNEEI 208 (280)
T ss_pred ------HHHHHHHHHHhcCCC-----HHHHHHHHHHHhcCCCC-----------------CHHHHHHHHHHhcC-CChHH
Confidence 237899999987543 47999999988887211 24678899999998 99999
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHhCcCCChhHHHHhhhcCCChhHhhc
Q 001733 631 NVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQ 710 (1019)
Q Consensus 631 ~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~~vr~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~LV~ 710 (1019)
+..|+++|..+-. ..+++.|+..|++++ ++..++.+|..+.. ...++.|.+
T Consensus 209 R~~A~~aLg~~~~--------------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~-------------~~a~p~L~~ 259 (280)
T PRK09687 209 RIEAIIGLALRKD--------------KRVLSVLIKELKKGT--VGDLIIEAAGELGD-------------KTLLPVLDT 259 (280)
T ss_pred HHHHHHHHHccCC--------------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCC-------------HhHHHHHHH
Confidence 9999999987632 246889999998876 67889999988875 246788888
Q ss_pred ccCCCCcChHHHHHHHHHHh
Q 001733 711 CPTETIHITEKQAVSAKFLA 730 (1019)
Q Consensus 711 lL~~~~~~~~~~~~A~~~L~ 730 (1019)
++.... +..++..|..+|.
T Consensus 260 l~~~~~-d~~v~~~a~~a~~ 278 (280)
T PRK09687 260 LLYKFD-DNEIITKAIDKLK 278 (280)
T ss_pred HHhhCC-ChhHHHHHHHHHh
Confidence 887554 5678877777664
No 33
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.25 E-value=1.7e-09 Score=137.52 Aligned_cols=277 Identities=17% Similarity=0.135 Sum_probs=209.0
Q ss_pred hcCChHHHHHHhccCCHHHHHHHHHHHHHhccCcccccccccchHHHHHHHHhcCChHHHHHHHHHHHHhhcCCcchHHH
Q 001733 475 ENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDSKINVPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCKIL 554 (1019)
Q Consensus 475 ~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~~~~l 554 (1019)
..+.++.|+..|.+.++.++..|+.+|..+.. ...++.|++.|.++++.++..|+.+|..+....+
T Consensus 619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~---------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~----- 684 (897)
T PRK13800 619 DAPSVAELAPYLADPDPGVRRTAVAVLTETTP---------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP----- 684 (897)
T ss_pred cchhHHHHHHHhcCCCHHHHHHHHHHHhhhcc---------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC-----
Confidence 44678899999999999999999999996532 3468999999999999999999999988854322
Q ss_pred HHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCcccccccccCcccchhhhHHHHHHHHcCCCCHHHHHHH
Q 001733 555 VEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHL 634 (1019)
Q Consensus 555 ~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a 634 (1019)
..+.|...|.+. ...++..|+.+|..+... ....|+..|.. .++.++..|
T Consensus 685 ----~~~~L~~~L~~~-----d~~VR~~A~~aL~~~~~~--------------------~~~~l~~~L~D-~d~~VR~~A 734 (897)
T PRK13800 685 ----PAPALRDHLGSP-----DPVVRAAALDVLRALRAG--------------------DAALFAAALGD-PDHRVRIEA 734 (897)
T ss_pred ----chHHHHHHhcCC-----CHHHHHHHHHHHHhhccC--------------------CHHHHHHHhcC-CCHHHHHHH
Confidence 234566666642 258888888888775321 12456778888 999999999
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHhCcCCChhHHHHhhhcCCChhHhhcccCC
Q 001733 635 IRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCPTE 714 (1019)
Q Consensus 635 ~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~~vr~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~LV~lL~~ 714 (1019)
+++|..+. ..+.|..++.++++++|..++.+|..+.... ...++.|..++++
T Consensus 735 v~aL~~~~-----------------~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~-----------~~~~~~L~~ll~D 786 (897)
T PRK13800 735 VRALVSVD-----------------DVESVAGAATDENREVRIAVAKGLATLGAGG-----------APAGDAVRALTGD 786 (897)
T ss_pred HHHHhccc-----------------CcHHHHHHhcCCCHHHHHHHHHHHHHhcccc-----------chhHHHHHHHhcC
Confidence 99988652 1234677899999999999999999887421 2346788888877
Q ss_pred CCcChHHHHHHHHHHhccCCCChhhHHHHHhCCChHHHHHHHHhhhccCCCccchhhhHHHHHHHHHHHHhcCCCchhHH
Q 001733 715 TIHITEKQAVSAKFLAKLPHQNLTLNLALSARNVVPTILQTINLIQRSGTRTSRYASAYLEGLIGILVRFTTTLYEPQIL 794 (1019)
Q Consensus 715 ~~~~~~~~~~A~~~L~nL~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~lt~~~~~~~~~ 794 (1019)
.+ ..++..|+..|+++.... . .++.+...|.+ ....+...++.+|..+..
T Consensus 787 ~d--~~VR~aA~~aLg~~g~~~-~---------~~~~l~~aL~d----------~d~~VR~~Aa~aL~~l~~-------- 836 (897)
T PRK13800 787 PD--PLVRAAALAALAELGCPP-D---------DVAAATAALRA----------SAWQVRQGAARALAGAAA-------- 836 (897)
T ss_pred CC--HHHHHHHHHHHHhcCCcc-h---------hHHHHHHHhcC----------CChHHHHHHHHHHHhccc--------
Confidence 75 699999999999996521 1 12345555543 123466678888876652
Q ss_pred HHHHhCCchHHHHHHHhcCCcHHHHHHHHHHHhhhcccCCcCCCCCCcCCcccccccccCcccccCCCCCCCCCCCcccC
Q 001733 795 FLARTHNFTSVFTELLMKTSCDEVQKLAAIGLENLSSESINLSKPPQIKSKKFMKFFSLPKSLSVGSSKKKSVSLCPVHR 874 (1019)
Q Consensus 795 ~~~~~~g~i~~Lv~LL~~~~~~~vk~~AA~aL~nLs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~v~~ 874 (1019)
...++.|+.+|++ .++.||..|+++|+.+..
T Consensus 837 -----~~a~~~L~~~L~D-~~~~VR~~A~~aL~~~~~------------------------------------------- 867 (897)
T PRK13800 837 -----DVAVPALVEALTD-PHLDVRKAAVLALTRWPG------------------------------------------- 867 (897)
T ss_pred -----cchHHHHHHHhcC-CCHHHHHHHHHHHhccCC-------------------------------------------
Confidence 2345899999999 899999999999987510
Q ss_pred CccccCccchhhhccchHHHHhhhccCchhhHHHHHHHHH
Q 001733 875 GACSSQNTFCLIDAKAVDRLLACLYHENVEVVEAALSALC 914 (1019)
Q Consensus 875 ~~cs~~~~~~Lv~~gai~~Lv~lL~~~d~~v~~~Al~AL~ 914 (1019)
...+++.|.+.|+++|..|+..|..||.
T Consensus 868 ------------~~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 868 ------------DPAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred ------------CHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 0125889999999999999999999986
No 34
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.24 E-value=1.6e-09 Score=123.79 Aligned_cols=482 Identities=14% Similarity=0.090 Sum_probs=305.7
Q ss_pred cCCHHHHHHHHHHHHHHHhcccccchHHHhcCChHHHHHHhhcC--CHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHH
Q 001733 319 AGSDRMVLEAIKDLQTVCQRKQYNKVQVRNVGVLPLLTKLLEYK--DRNVRCAAMELLRQLVVEDDEGKEMIAETMDISI 396 (1019)
Q Consensus 319 ~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~s~--~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~ 396 (1019)
..+++..++|+....++.-+++.++..+.+.|++|.|..+++.. ..+.+.....++..+.....+....+.+.+-++.
T Consensus 20 ~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~ 99 (678)
T KOG1293|consen 20 HLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLK 99 (678)
T ss_pred cCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHH
Confidence 45677789999999999999999999899999999999999864 4555555666676777677778888889999999
Q ss_pred HHHHhcCCC-hhHHHHHHHHHHHhccChhhhhhhhcc--cchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHH
Q 001733 397 LIKLLSSSH-RPVRHESLLLLLELSSTRSLCEKIGSI--PGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCM 473 (1019)
Q Consensus 397 Lv~lL~~~~-~~~r~~Aa~~L~~Ls~~~~~~~~i~~~--~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i 473 (1019)
|..+|...+ ..+++...+++..+-............ ...|+.+..++. -+.......-+....++|...+++..+
T Consensus 100 Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s--~~lk~~~~l~~~~~a~~s~~~~hq~Il 177 (678)
T KOG1293|consen 100 LLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYS--IELKYISRLDVSRAAHLSSTKDHQLIL 177 (678)
T ss_pred HHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHh--hhhhhhhhhhhhhhccccccchhhhee
Confidence 999999988 678888899999887654333332221 223333333332 122333444455666777778888888
Q ss_pred HhcCChHHHHHHhccCCHHHHHHHHHHHH---Hhcc-Cccccccc-c---cchH-H--HHHHHHhcCChHHHHHHHHHHH
Q 001733 474 AENGLLEPLMHHLNEGSEEIQMEMASYLG---EIVL-GHDSKINV-P---GRAA-S--TLIRMVHSGNSLTRRIAFKALM 542 (1019)
Q Consensus 474 ~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~---~La~-~~~~~~~i-~---~~~i-~--~Lv~lL~~~~~~~~~~A~~aL~ 542 (1019)
..+|+.+.+.-++...+...+..+...+. ++.. ++.+...+ . .+++ + .+.++++++....+..++.+|.
T Consensus 178 ~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~ 257 (678)
T KOG1293|consen 178 CNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLV 257 (678)
T ss_pred ccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHH
Confidence 99999888877777667788888888888 6555 44444433 1 1233 3 5567888888888888999998
Q ss_pred HhhcCCcchHHH------HHcCc----HHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCcccccccccCcccchh
Q 001733 543 QISSHHPSCKIL------VEAGI----VQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSD 612 (1019)
Q Consensus 543 ~Ls~~~~~~~~l------~~~G~----v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~ 612 (1019)
++...+.+...+ .+.|- .-..+.++..++.. .....-.--..++.+++..+.+ ....
T Consensus 258 ~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s--~l~~~~~l~c~~a~~~sklq~~-----------~~e~ 324 (678)
T KOG1293|consen 258 PYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLS--TLDHTNVLFCILARFASKLQLP-----------QHEE 324 (678)
T ss_pred HHHhccccccccccceeeccCchHHHHHHhhheeecCCcee--ehhhhhhhHHHHHHHHHhhhhH-----------Hhhh
Confidence 887655332222 22331 11111222222211 0111112222233344433322 2334
Q ss_pred hhHHHHHHHHcCC-----CCHHHHHHHHH---HHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHH
Q 001733 613 YVVYNIIYMLKNS-----TPDELNVHLIR---ILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLT 684 (1019)
Q Consensus 613 ~~i~~Ll~LL~~~-----~~~~v~~~a~~---aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~~vr~~A~~~L~ 684 (1019)
..++....++... ..+..+.-++. .+...+.... -..++.+.+.-....+..+....+...+.+|+-++.
T Consensus 325 ~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~--i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~ 402 (678)
T KOG1293|consen 325 ATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLE--ISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLK 402 (678)
T ss_pred hhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcc--hhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHH
Confidence 4556666666541 22222222111 1112222221 122334444333344444445667788888888888
Q ss_pred HhCcCCChhHHHHhhhcCCChhHhhcccCCCCcChHHHHHHHHHHhccCCCChhhHHHHHhCCChHHHHHHHHhhhccCC
Q 001733 685 TLSPYLGHTLVERLCKTRGQPENLIQCPTETIHITEKQAVSAKFLAKLPHQNLTLNLALSARNVVPTILQTINLIQRSGT 764 (1019)
Q Consensus 685 ~Ls~~~~~~~~~~l~~~~g~i~~LV~lL~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~ 764 (1019)
++++....--.. +. ...+..+||+++..++ .-++..++|+|+|++..-...+..+++.|++..+.+.+.+.
T Consensus 403 s~srsV~aL~tg-~~-~~dv~~plvqll~dp~--~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~----- 473 (678)
T KOG1293|consen 403 SFSRSVSALRTG-LK-RNDVAQPLVQLLMDPE--IMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDP----- 473 (678)
T ss_pred HHHHHHHHHHcC-Cc-cchhHHHHHHHhhCcc--hhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCC-----
Confidence 887532211111 22 1467899999995554 58899999999999987778889999999999999998631
Q ss_pred CccchhhhHHHHHHHHHHHHhcCCCchhHHHHHHhCCch-HHHHHHHhcCCcHHHHHHHHHHHhhhcccCC
Q 001733 765 RTSRYASAYLEGLIGILVRFTTTLYEPQILFLARTHNFT-SVFTELLMKTSCDEVQKLAAIGLENLSSESI 834 (1019)
Q Consensus 765 ~~~~~~~~~~e~a~~aL~~lt~~~~~~~~~~~~~~~g~i-~~Lv~LL~~~~~~~vk~~AA~aL~nLs~~~~ 834 (1019)
......+..++|.++..+ +.+..+......+- ..++.+..+ +++.||+.+-..|.||..+..
T Consensus 474 -----~~n~r~~~~~~Lr~l~f~--~de~~k~~~~~ki~a~~i~~l~nd-~d~~Vqeq~fqllRNl~c~~~ 536 (678)
T KOG1293|consen 474 -----DFNSRANSLWVLRHLMFN--CDEEEKFQLLAKIPANLILDLIND-PDWAVQEQCFQLLRNLTCNSR 536 (678)
T ss_pred -----CchHHHHHHHHHHHHHhc--chHHHHHHHHHHhhHHHHHHHHhC-CCHHHHHHHHHHHHHhhcCcH
Confidence 233457889999999986 34444433333333 345566666 899999999999999998863
No 35
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.23 E-value=3.5e-09 Score=128.25 Aligned_cols=471 Identities=15% Similarity=0.163 Sum_probs=319.5
Q ss_pred HHHHhcCC--ChhHHHHHHHHHHHhccChhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHHH
Q 001733 397 LIKLLSSS--HRPVRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMA 474 (1019)
Q Consensus 397 Lv~lL~~~--~~~~r~~Aa~~L~~Ls~~~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~ 474 (1019)
+.+.+.+. +...+..++.-|..+...... ..-+.+..++++. +.+...++-+--++..+...+.....+
T Consensus 9 l~~~~~~~~~~~~~~~~~l~kli~~~~~G~~------~~~~~~~vi~l~~--s~~~~~Krl~yl~l~~~~~~~~~~~~l- 79 (526)
T PF01602_consen 9 LAKILNSFKIDISKKKEALKKLIYLMMLGYD------ISFLFMEVIKLIS--SKDLELKRLGYLYLSLYLHEDPELLIL- 79 (526)
T ss_dssp HHHHHHCSSTHHHHHHHHHHHHHHHHHTT---------GSTHHHHHCTCS--SSSHHHHHHHHHHHHHHTTTSHHHHHH-
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHcCCC------CchHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhcchhHHHH-
Confidence 44555554 555555555444444332211 1356778888884 678888888888888777655553333
Q ss_pred hcCChHHHHHHhccCCHHHHHHHHHHHHHhccCcccccccccchHHHHHHHHhcCChHHHHHHHHHHHHhhcCCcchHHH
Q 001733 475 ENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDSKINVPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCKIL 554 (1019)
Q Consensus 475 ~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~~~~l 554 (1019)
++..+.+=|.+.++.++..|+++|++++. ..+.+..++.+.+++.++++.+|+.|+.++..+....++ .+
T Consensus 80 ---~~n~l~kdl~~~n~~~~~lAL~~l~~i~~-----~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~--~~ 149 (526)
T PF01602_consen 80 ---IINSLQKDLNSPNPYIRGLALRTLSNIRT-----PEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD--LV 149 (526)
T ss_dssp ---HHHHHHHHHCSSSHHHHHHHHHHHHHH-S-----HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC--CH
T ss_pred ---HHHHHHHhhcCCCHHHHHHHHhhhhhhcc-----cchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH--HH
Confidence 56778888889999999999999999873 233445678899999999999999999999999876554 22
Q ss_pred HHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCcccccccccCcccchhhhHHHHHHHHcCCCCHHHHHHH
Q 001733 555 VEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHL 634 (1019)
Q Consensus 555 ~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a 634 (1019)
... .++.+..+|.+.+ ..++..|..++..+ ....... .-.....+..|..++.. .+|..+..+
T Consensus 150 ~~~-~~~~l~~lL~d~~-----~~V~~~a~~~l~~i-~~~~~~~---------~~~~~~~~~~L~~~l~~-~~~~~q~~i 212 (526)
T PF01602_consen 150 EDE-LIPKLKQLLSDKD-----PSVVSAALSLLSEI-KCNDDSY---------KSLIPKLIRILCQLLSD-PDPWLQIKI 212 (526)
T ss_dssp HGG-HHHHHHHHTTHSS-----HHHHHHHHHHHHHH-HCTHHHH---------TTHHHHHHHHHHHHHTC-CSHHHHHHH
T ss_pred HHH-HHHHHhhhccCCc-----chhHHHHHHHHHHH-ccCcchh---------hhhHHHHHHHhhhcccc-cchHHHHHH
Confidence 233 6888888886542 57888888888888 2211110 01224455666666666 899999999
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHhCcCCChhHHHHhhhcCCChhHhhcccCC
Q 001733 635 IRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCPTE 714 (1019)
Q Consensus 635 ~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~~vr~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~LV~lL~~ 714 (1019)
++.|..++....... . ....++.+..++++.++.+...|++++..+.... . +. ..+++.|++++.+
T Consensus 213 l~~l~~~~~~~~~~~---~---~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~--~----~~--~~~~~~L~~lL~s 278 (526)
T PF01602_consen 213 LRLLRRYAPMEPEDA---D---KNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSP--E----LL--QKAINPLIKLLSS 278 (526)
T ss_dssp HHHHTTSTSSSHHHH---H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSH--H----HH--HHHHHHHHHHHTS
T ss_pred HHHHHhcccCChhhh---h---HHHHHHHHHHHhhccccHHHHHHHHHHHHhhcch--H----HH--HhhHHHHHHHhhc
Confidence 999998877543211 0 0345678888999888999999999999988632 2 11 2467899999986
Q ss_pred CCcChHHHHHHHHHHhccCCCChhhHHHHHhCCChHHHHHHHHhhhccCCCccchhhhHHHHHHHHHHHHhcCCCchhHH
Q 001733 715 TIHITEKQAVSAKFLAKLPHQNLTLNLALSARNVVPTILQTINLIQRSGTRTSRYASAYLEGLIGILVRFTTTLYEPQIL 794 (1019)
Q Consensus 715 ~~~~~~~~~~A~~~L~nL~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~lt~~~~~~~~~ 794 (1019)
++ .+++..++..|..+...+ ...+. .....+..+.. . ....+...++.+|.+++ ++.+.
T Consensus 279 ~~--~nvr~~~L~~L~~l~~~~---~~~v~---~~~~~~~~l~~---~------~d~~Ir~~~l~lL~~l~----~~~n~ 337 (526)
T PF01602_consen 279 SD--PNVRYIALDSLSQLAQSN---PPAVF---NQSLILFFLLY---D------DDPSIRKKALDLLYKLA----NESNV 337 (526)
T ss_dssp SS--HHHHHHHHHHHHHHCCHC---HHHHG---THHHHHHHHHC---S------SSHHHHHHHHHHHHHH------HHHH
T ss_pred cc--chhehhHHHHHHHhhccc---chhhh---hhhhhhheecC---C------CChhHHHHHHHHHhhcc----cccch
Confidence 54 689999999999998755 12222 22333344431 1 24557778888888888 55655
Q ss_pred HHHHhCCchHHHHHHHhcCCcHHHHHHHHHHHhhhcccCCcCCCCCCcCCcccccccccCcccccCCCCCCCCCCCcccC
Q 001733 795 FLARTHNFTSVFTELLMKTSCDEVQKLAAIGLENLSSESINLSKPPQIKSKKFMKFFSLPKSLSVGSSKKKSVSLCPVHR 874 (1019)
Q Consensus 795 ~~~~~~g~i~~Lv~LL~~~~~~~vk~~AA~aL~nLs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~v~~ 874 (1019)
+. +++.|...+...+++.++..++.+|+.++...+ +.
T Consensus 338 ~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~--------~~------------------------------ 374 (526)
T PF01602_consen 338 KE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEKFP--------PD------------------------------ 374 (526)
T ss_dssp HH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHG--------SS------------------------------
T ss_pred hh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhccC--------ch------------------------------
Confidence 54 467788888442588899999999999875431 00
Q ss_pred CccccCccchhhhccchHHHHhhhccCchhhHHHHHHHHHhhhccCcchhhHHHHHHhccchHHHHHHHhhcChhhHHHH
Q 001733 875 GACSSQNTFCLIDAKAVDRLLACLYHENVEVVEAALSALCTLLDEKVDVDKSVSMLSEVNAIQHVLNVVKEHRQEVLQQK 954 (1019)
Q Consensus 875 ~~cs~~~~~~Lv~~gai~~Lv~lL~~~d~~v~~~Al~AL~~L~~d~~~~~~~~~~i~~~~~i~~l~~lL~~~~~~~~~~~ 954 (1019)
..-.+..|+++|...+..+...+...+.+++.+.... ....+..+++.+..-.++.+...
T Consensus 375 ------------~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~--------~~~~l~~L~~~l~~~~~~~~~~~ 434 (526)
T PF01602_consen 375 ------------AEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPEL--------REKILKKLIELLEDISSPEALAA 434 (526)
T ss_dssp ------------HHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTT--------HHHHHHHHHHHHTSSSSHHHHHH
T ss_pred ------------HHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhh--------hHHHHHHHHHHHHHhhHHHHHHH
Confidence 1224889999999998999999999999998654321 11347788888885567889999
Q ss_pred HHHHHHHHHhhCCc-cccccccccccchHHHHHHhhcCCchhhHHHHHHHHHhc
Q 001733 955 SFWMIERFLVKGGN-KQASDISQDRLLPATLVSAFHHGDVNTRQMAEKILRHLN 1007 (1019)
Q Consensus 955 A~~aL~~i~~~~~~-~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~~L~~L~ 1007 (1019)
++|+|+.+...-+. +... .....+++.+...+..+|...-.++..+.
T Consensus 435 ~~wilGEy~~~~~~~~~~~------~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~ 482 (526)
T PF01602_consen 435 AIWILGEYGELIENTESAP------DILRSLIENFIEESPEVKLQILTALAKLF 482 (526)
T ss_dssp HHHHHHHHCHHHTTTTHHH------HHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred HHhhhcccCCcccccccHH------HHHHHHHHhhccccHHHHHHHHHHHHHHH
Confidence 99999998766221 0111 11234666666666777766666665554
No 36
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=3.7e-08 Score=119.54 Aligned_cols=464 Identities=14% Similarity=0.127 Sum_probs=282.7
Q ss_pred cCCHHHHHHHHHHHHHHHhc-----ccccchHHHhcCChHHHHH-HhhcCCHHHHHHHHHHHHhhccCChhHHHHHHhcC
Q 001733 319 AGSDRMVLEAIKDLQTVCQR-----KQYNKVQVRNVGVLPLLTK-LLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETM 392 (1019)
Q Consensus 319 ~~~~~~~~~Al~~L~~l~~~-----~~~~r~~i~~~g~i~~Lv~-lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g 392 (1019)
+.+++.+.-|+-.+|.++.+ +.+.|..|.. .|+. +.+...+.+|.+-..++..+++..-+. .=.+
T Consensus 48 ~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks-----~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e----~WPe 118 (1075)
T KOG2171|consen 48 SADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKS-----SLLEIIQSETEPSVRHKLADVIAEIARNDLPE----KWPE 118 (1075)
T ss_pred CCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHH-----HHHHHHHhccchHHHHHHHHHHHHHHHhcccc----chHH
Confidence 44555555455555555443 2233333322 2333 334456778888888888887422111 0134
Q ss_pred CHHHHHHHhcCCChhHHHHHHHHHHHhccChhhhhhhhcccchHHHHHHhhhc---CCCChHHHHHHHHHHHHhcCCC-C
Q 001733 393 DISILIKLLSSSHRPVRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKFN---WSIDVFAAEIADQILRNLERNP-D 468 (1019)
Q Consensus 393 ~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~~~~~~~i~~~~g~I~~LV~lL~~---~~~~~~~~~~A~~aL~nLs~~~-~ 468 (1019)
.++.|+...+++++..|+.|..+|+.+...-.+. ..+-++.+..++.. ..+++ ++..|+.++...+... .
T Consensus 119 ll~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~-----~~~~~~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~ 192 (1075)
T KOG2171|consen 119 LLQFLFQSTKSPNPSLRESALLILSSLPETFGNT-----LQPHLDDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLEN 192 (1075)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccc-----cchhHHHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhcc
Confidence 5777888888999999999999999986543222 13445556666531 23444 8899999998887544 3
Q ss_pred chHHHHhc-CChHHHHHHhc----cCCHHHHHHHHHHHHHhccC-cccccccccchHHHHHHHHhcC--ChHHHHHHHHH
Q 001733 469 NIKCMAEN-GLLEPLMHHLN----EGSEEIQMEMASYLGEIVLG-HDSKINVPGRAASTLIRMVHSG--NSLTRRIAFKA 540 (1019)
Q Consensus 469 n~~~i~~~-G~i~~Lv~lL~----~~~~~~~~~aa~~L~~La~~-~~~~~~i~~~~i~~Lv~lL~~~--~~~~~~~A~~a 540 (1019)
|+...-.. ..+|.++..+. .++.+....+..+|..|+.. +..-.......+..-+++.++. ++.+|..|+.+
T Consensus 193 ~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ 272 (1075)
T KOG2171|consen 193 NKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEF 272 (1075)
T ss_pred chHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 44333222 35666666554 56777777888888887763 3221122223445555566554 46789999999
Q ss_pred HHHhhcCCcc-hHHH--HHcCcHHHHHHHHhhhccC----------C-CChhHHHHHHHHHHHHHhcCCCcccccccccC
Q 001733 541 LMQISSHHPS-CKIL--VEAGIVQVMAEEMFIRIIH----------N-EPMNSKEEAAAILANILESGLEHHSLQVNSHG 606 (1019)
Q Consensus 541 L~~Ls~~~~~-~~~l--~~~G~v~~Lv~lL~~~~~~----------~-~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g 606 (1019)
|..++...+. .+.. .-.-.++.++..+.....+ . ........|..+|-.++.+-.+..
T Consensus 273 ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~-------- 344 (1075)
T KOG2171|consen 273 LVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQ-------- 344 (1075)
T ss_pred HHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhh--------
Confidence 9999987443 1111 1123355555555432211 0 101345677777888877654332
Q ss_pred cccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHh
Q 001733 607 HTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTL 686 (1019)
Q Consensus 607 ~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~~vr~~A~~~L~~L 686 (1019)
.-.-+.+.+-.+|++ ++...|..++.+|..++.... +...... ...++..+.+|+++++.||.+|+.++..+
T Consensus 345 ---v~p~~~~~l~~~l~S-~~w~~R~AaL~Als~i~EGc~---~~m~~~l-~~Il~~Vl~~l~DphprVr~AA~naigQ~ 416 (1075)
T KOG2171|consen 345 ---VLPPLFEALEAMLQS-TEWKERHAALLALSVIAEGCS---DVMIGNL-PKILPIVLNGLNDPHPRVRYAALNAIGQM 416 (1075)
T ss_pred ---ehHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHcccH---HHHHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHhh
Confidence 113455666667777 899999999999999987543 2222111 24556677899999999999999999999
Q ss_pred CcCCChhHHHHhhhcCCChhHhhcccCCCCcChHHHHHHHHHHhccCCCChhhHHHHHhCCChHHHHH-HHHhhhccCCC
Q 001733 687 SPYLGHTLVERLCKTRGQPENLIQCPTETIHITEKQAVSAKFLAKLPHQNLTLNLALSARNVVPTILQ-TINLIQRSGTR 765 (1019)
Q Consensus 687 s~~~~~~~~~~l~~~~g~i~~LV~lL~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~l~~~g~l~~Lv~-lL~~~~~~~~~ 765 (1019)
+.+...++..... +..++.|+..+.+.. +..++..|+.++-|+......- .+ ...++.|++ ++.-...
T Consensus 417 stdl~p~iqk~~~--e~l~~aL~~~ld~~~-~~rV~ahAa~al~nf~E~~~~~---~l-~pYLd~lm~~~l~~L~~---- 485 (1075)
T KOG2171|consen 417 STDLQPEIQKKHH--ERLPPALIALLDSTQ-NVRVQAHAAAALVNFSEECDKS---IL-EPYLDGLMEKKLLLLLQ---- 485 (1075)
T ss_pred hhhhcHHHHHHHH--HhccHHHHHHhcccC-chHHHHHHHHHHHHHHHhCcHH---HH-HHHHHHHHHHHHHHHhc----
Confidence 9777777777776 457889999998887 6789999999988886533221 11 234444444 2221111
Q ss_pred ccchhhhHHHHHHHHHHHHhcCCCchhHHHHHH-hCCchHHHHHHHhcCCcHHHHHHHHHHHhhhc
Q 001733 766 TSRYASAYLEGLIGILVRFTTTLYEPQILFLAR-THNFTSVFTELLMKTSCDEVQKLAAIGLENLS 830 (1019)
Q Consensus 766 ~~~~~~~~~e~a~~aL~~lt~~~~~~~~~~~~~-~~g~i~~Lv~LL~~~~~~~vk~~AA~aL~nLs 830 (1019)
+....++|.++.+|...+.. ....++- -..++|.|...|++.++.+.|......+.+++
T Consensus 486 --~~~~~v~e~vvtaIasvA~A----A~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcis 545 (1075)
T KOG2171|consen 486 --SSKPYVQEQAVTAIASVADA----AQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLS 545 (1075)
T ss_pred --CCchhHHHHHHHHHHHHHHH----HhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHH
Confidence 12456789999998877732 1111111 13567899999998433555555555444443
No 37
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=1.5e-06 Score=101.24 Aligned_cols=480 Identities=16% Similarity=0.164 Sum_probs=302.0
Q ss_pred hHHHHHHHHHHHchhhhhhhhhhhhcccCCHHHHHHHHHHHHHHHhcccccchHHHhcCChHHHHHHhhc--CCHHHHHH
Q 001733 292 ALKTTIEEWKDRNDAERIKVSRAALSLAGSDRMVLEAIKDLQTVCQRKQYNKVQVRNVGVLPLLTKLLEY--KDRNVRCA 369 (1019)
Q Consensus 292 ~Lr~~I~~w~~~~~~~~~~~~~~~l~~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~s--~~~~~~~~ 369 (1019)
.-...|+..|+|-. .+.-.+++..|++.|+.+++. +|..++..| .++|+..|.. .|++....
T Consensus 19 s~aETI~kLcDRve------------ssTL~eDRR~A~rgLKa~srk---YR~~Vga~G-mk~li~vL~~D~~D~E~ik~ 82 (970)
T KOG0946|consen 19 SAAETIEKLCDRVE------------SSTLLEDRRDAVRGLKAFSRK---YREEVGAQG-MKPLIQVLQRDYMDPEIIKY 82 (970)
T ss_pred cHHhHHHHHHHHHh------------hccchhhHHHHHHHHHHHHHH---HHHHHHHcc-cHHHHHHHhhccCCHHHHHH
Confidence 34677888887743 233357788999999999875 566666555 7999999985 48999999
Q ss_pred HHHHHHhhccCCh------hHH------H-----HHHhcCCHHHHHHHhcCCChhHHHHHHHHHHHhcc--Chhhhhhhh
Q 001733 370 AMELLRQLVVEDD------EGK------E-----MIAETMDISILIKLLSSSHRPVRHESLLLLLELSS--TRSLCEKIG 430 (1019)
Q Consensus 370 Al~~L~~La~~~~------~~k------~-----~I~~~g~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~--~~~~~~~i~ 430 (1019)
++..++++...++ +.+ . .|-..+-|..++..+...|-.+|..|+.+|..|-. ..+.+..+.
T Consensus 83 ~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll 162 (970)
T KOG0946|consen 83 ALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALL 162 (970)
T ss_pred HHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 9999999875543 222 1 23346789999999999999999999999999865 347888888
Q ss_pred cccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHHHh-cCChHHHHHHhcc-C-C--HHHHHHHHHHHHHhc
Q 001733 431 SIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAE-NGLLEPLMHHLNE-G-S--EEIQMEMASYLGEIV 505 (1019)
Q Consensus 431 ~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~-~G~i~~Lv~lL~~-~-~--~~~~~~aa~~L~~La 505 (1019)
..+-+|..|+.+|. .....++..|.-.|..|.....+..+++. .+++..|..++.. | . .-+..+|+..|.||-
T Consensus 163 ~~P~gIS~lmdlL~--DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLL 240 (970)
T KOG0946|consen 163 VSPMGISKLMDLLR--DSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLL 240 (970)
T ss_pred HCchhHHHHHHHHh--hhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH
Confidence 88999999999995 23345677788888999987777776664 4899999999974 2 2 357889999999998
Q ss_pred cC-cccccccccc-hHHHHHHHHhc---CCh----------HHHHHHHHHHHHhhcCCc-------chHHHHHcCcHHHH
Q 001733 506 LG-HDSKINVPGR-AASTLIRMVHS---GNS----------LTRRIAFKALMQISSHHP-------SCKILVEAGIVQVM 563 (1019)
Q Consensus 506 ~~-~~~~~~i~~~-~i~~Lv~lL~~---~~~----------~~~~~A~~aL~~Ls~~~~-------~~~~l~~~G~v~~L 563 (1019)
.+ ..|...+.++ -+|.|.++|.. ++. .....++.++..|...+. +++.+...+++..|
T Consensus 241 K~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~L 320 (970)
T KOG0946|consen 241 KNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVL 320 (970)
T ss_pred hhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHH
Confidence 84 5566666776 59999988864 221 123346666666654331 24677889999999
Q ss_pred HHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCccccccc---ccCcccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 001733 564 AEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVN---SHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQC 640 (1019)
Q Consensus 564 v~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~---~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~ 640 (1019)
..++.+++ .|.+++..+.-+++++..++...+....+ +.+.. -...++-.++.+....-+...|..+..++.+
T Consensus 321 c~il~~~~---vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~-Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s 396 (970)
T KOG0946|consen 321 CTILMHPG---VPADILTESIITVAEVVRGNARNQDEFADVTAPSIPN-PRPSIVVLLMSMFNEKQPFSLRCAVLYCFRS 396 (970)
T ss_pred HHHHcCCC---CcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCC-CccchhHHHHHHHhccCCchHHHHHHHHHHH
Confidence 99998775 46788888888889988876543322111 11100 1233455566666654667888888888887
Q ss_pred HhCCCCchHHHHHHHHHcCChHHHHHhhcCCCH-HHHHHHHHHHHHhCcCCChhHHHHhhhcCCChhHhhcccCCCCcCh
Q 001733 641 LTKSPKPMATIVSVIKETEASYSLLEVINNPHD-ELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCPTETIHIT 719 (1019)
Q Consensus 641 La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~-~vr~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~LV~lL~~~~~~~ 719 (1019)
........ . ...+..+++...++.. .+.....-+..+.+ .+....++.. -.|.-++.+++
T Consensus 397 ~l~dN~~g---q-----~~~l~tllp~~~nst~Nsl~ag~l~~~~l~s---~d~~~nwFt~-----v~lmh~l~dn~--- 457 (970)
T KOG0946|consen 397 YLYDNDDG---Q-----RKFLKTLLPSSTNSTSNSLSAGQLLLVGLSS---TDSLDNWFTA-----VILMHLLQDND--- 457 (970)
T ss_pred HHhcchhh---H-----HHHHHHHhhhhccccccchhhhhHHHHhhcc---chHHHHHHHH-----HHHHHHHHHhH---
Confidence 76644321 1 1234455555544433 44444443333333 2223333321 12333333322
Q ss_pred HHHHHHHHHHhccCCCChhhHHHHHhCCChHHHHHHHHhhhccCCCccchhhhHHHHHHHHHHHHhcCCCchhH-HHHHH
Q 001733 720 EKQAVSAKFLAKLPHQNLTLNLALSARNVVPTILQTINLIQRSGTRTSRYASAYLEGLIGILVRFTTTLYEPQI-LFLAR 798 (1019)
Q Consensus 720 ~~~~~A~~~L~nL~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~lt~~~~~~~~-~~~~~ 798 (1019)
..+..-+.+.-+.+.+++..+- +...+..+... +..+ +... -+....|.-.-.+ +|.. -.++.
T Consensus 458 ~~kEeLlrV~l~~~~gn~p~tl-------L~~~ct~~~~~--~t~r---~qt~--vglLmlL~~WL~~--cp~AV~dFLs 521 (970)
T KOG0946|consen 458 QLKEELLRVPLAVDTGNDPDTL-------LFQQCTNLKLQ--GTSR---HQTR--VGLLMLLITWLYG--CPDAVKDFLS 521 (970)
T ss_pred HHHHHHHhhhhcccCCCCchHH-------HHHHHHHHHHH--hhhh---HHHH--HHHHHHHHHHHcC--CcHHHHHHHc
Confidence 3334444444455555553211 11222222210 1111 1111 1122222222222 6654 45677
Q ss_pred hCCchHHHHHHHhcCC----cHHHHHHHHHHHhh
Q 001733 799 THNFTSVFTELLMKTS----CDEVQKLAAIGLEN 828 (1019)
Q Consensus 799 ~~g~i~~Lv~LL~~~~----~~~vk~~AA~aL~n 828 (1019)
+.+.|+.|...|.+.- +..+|...|.-|+-
T Consensus 522 ~~s~iq~Ltt~l~~n~~~Ese~viqgl~A~lLgl 555 (970)
T KOG0946|consen 522 ESSIIQYLTTQLMDNQGSESEQVIQGLCAFLLGL 555 (970)
T ss_pred cccHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Confidence 8899998888877631 34678778877763
No 38
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.00 E-value=2e-10 Score=86.25 Aligned_cols=42 Identities=21% Similarity=0.653 Sum_probs=31.8
Q ss_pred cccCcccCCCceecCCCccccHHHHHHHHhhhccCCCCCCCCC
Q 001733 236 CPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTT 278 (1019)
Q Consensus 236 Cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~ 278 (1019)
||||+++|+|||+++|||+||++||++||+... +....||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~-~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPS-GSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSS-SST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccC-CcCCCCcCC
Confidence 899999999999999999999999999998731 112579976
No 39
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.99 E-value=5.5e-09 Score=99.17 Aligned_cols=117 Identities=26% Similarity=0.274 Sum_probs=104.6
Q ss_pred HHhcCChHHHHHHhhcCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHhcCCChhHHHHHHHHHHHhccChhh
Q 001733 346 VRNVGVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSSHRPVRHESLLLLLELSSTRSL 425 (1019)
Q Consensus 346 i~~~g~i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~~~~ 425 (1019)
+.+.|+++.|+.+|.+++.+.+..|+.+|.+++..+++++..+.+.|+++.++.+|.++++.++..|+++|.+|+.....
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 82 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED 82 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH
Confidence 56889999999999999999999999999999977789999999999999999999999999999999999999998754
Q ss_pred hhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhc
Q 001733 426 CEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLE 464 (1019)
Q Consensus 426 ~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs 464 (1019)
........|.++.|++++. ..+..+++.++.+|.+|+
T Consensus 83 ~~~~~~~~g~l~~l~~~l~--~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 83 NKLIVLEAGGVPKLVNLLD--SSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHCCChHHHHHHHh--cCCHHHHHHHHHHHHHhh
Confidence 4443345899999999995 457889999999999986
No 40
>PTZ00429 beta-adaptin; Provisional
Probab=98.96 E-value=2.6e-06 Score=104.25 Aligned_cols=367 Identities=13% Similarity=0.103 Sum_probs=239.4
Q ss_pred cCCHHHHHHHhcCCChhHHHHHHH-HHHHhccChhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCc
Q 001733 391 TMDISILIKLLSSSHRPVRHESLL-LLLELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDN 469 (1019)
Q Consensus 391 ~g~i~~Lv~lL~~~~~~~r~~Aa~-~L~~Ls~~~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n 469 (1019)
.|=+..|-..|.+.+...+..|+. ++..++...+. ....+-.++++ .+.|.+.++...-.|.+.+.....
T Consensus 31 kge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~Dv-------S~LF~dVvk~~--~S~d~elKKLvYLYL~~ya~~~pe 101 (746)
T PTZ00429 31 RGEGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDV-------SYLFVDVVKLA--PSTDLELKKLVYLYVLSTARLQPE 101 (746)
T ss_pred cchHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCc-------hHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcccChH
Confidence 344555666666666655666664 44444444322 33556666766 467888899888888888764433
Q ss_pred hHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCcccccccccchHHHHHHHHhcCChHHHHHHHHHHHHhhcCCc
Q 001733 470 IKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDSKINVPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHP 549 (1019)
Q Consensus 470 ~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~ 549 (1019)
...+ ++..|.+=+.+.++-++..|+++|..+-. ..+.+..++++.+.+.+.++-+|+.|+-++.+|-..++
T Consensus 102 lalL----aINtl~KDl~d~Np~IRaLALRtLs~Ir~-----~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p 172 (746)
T PTZ00429 102 KALL----AVNTFLQDTTNSSPVVRALAVRTMMCIRV-----SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM 172 (746)
T ss_pred HHHH----HHHHHHHHcCCCCHHHHHHHHHHHHcCCc-----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc
Confidence 3333 46778888888999999999999987643 12334456778888889999999999999999976655
Q ss_pred chHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCcccccccccCcccchhhhHHHHHHHHcCCCCHH
Q 001733 550 SCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDE 629 (1019)
Q Consensus 550 ~~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~ 629 (1019)
. .+.+.|.++.|.++|...+ ..+..+|..+|..+....... + -.....+..|+..|.. .++.
T Consensus 173 e--lv~~~~~~~~L~~LL~D~d-----p~Vv~nAl~aL~eI~~~~~~~--l--------~l~~~~~~~Ll~~L~e-~~EW 234 (746)
T PTZ00429 173 Q--LFYQQDFKKDLVELLNDNN-----PVVASNAAAIVCEVNDYGSEK--I--------ESSNEWVNRLVYHLPE-CNEW 234 (746)
T ss_pred c--cccccchHHHHHHHhcCCC-----ccHHHHHHHHHHHHHHhCchh--h--------HHHHHHHHHHHHHhhc-CChH
Confidence 3 4556788999999876432 478899999999997654321 1 1235667788888877 7888
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHhCcCCChhHHHHhhhcCCChhHhh
Q 001733 630 LNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLI 709 (1019)
Q Consensus 630 v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~~vr~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~LV 709 (1019)
.|...+.+|.... |....+. ...+..+.+.|++.++.|...|++++.++............. ...-.+|+
T Consensus 235 ~Qi~IL~lL~~y~--P~~~~e~------~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~--~rl~~pLv 304 (746)
T PTZ00429 235 GQLYILELLAAQR--PSDKESA------ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCT--VRVNTALL 304 (746)
T ss_pred HHHHHHHHHHhcC--CCCcHHH------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHH--HHHHHHHH
Confidence 8988888885532 2221221 134567778899999999999999999998654434333322 12336777
Q ss_pred cccCCCCcChHHHHHHHHHHhccCCCChhhHHHHHhCCChHHHHHHHHhhhccCCCccchhhhHHHHHHHHHHHHhcCCC
Q 001733 710 QCPTETIHITEKQAVSAKFLAKLPHQNLTLNLALSARNVVPTILQTINLIQRSGTRTSRYASAYLEGLIGILVRFTTTLY 789 (1019)
Q Consensus 710 ~lL~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~lt~~~~ 789 (1019)
.++. ++ .+++-.++..|.-+....+.+ .... +..+.-+.. ....++...+.+|..++
T Consensus 305 ~L~s-s~--~eiqyvaLr~I~~i~~~~P~l----f~~~-~~~Ff~~~~-----------Dp~yIK~~KLeIL~~La---- 361 (746)
T PTZ00429 305 TLSR-RD--AETQYIVCKNIHALLVIFPNL----LRTN-LDSFYVRYS-----------DPPFVKLEKLRLLLKLV---- 361 (746)
T ss_pred HhhC-CC--ccHHHHHHHHHHHHHHHCHHH----HHHH-HHhhhcccC-----------CcHHHHHHHHHHHHHHc----
Confidence 7753 33 478888887665554433321 1110 111111111 12235556677777777
Q ss_pred chhHHHHHHhCCchHHHHHHHhcCCcHHHHHHHHHHHhhhccc
Q 001733 790 EPQILFLARTHNFTSVFTELLMKTSCDEVQKLAAIGLENLSSE 832 (1019)
Q Consensus 790 ~~~~~~~~~~~g~i~~Lv~LL~~~~~~~vk~~AA~aL~nLs~~ 832 (1019)
++++...+. .-|.....+ .+.+.++.+..+++.++..
T Consensus 362 ne~Nv~~IL-----~EL~eYa~d-~D~ef~r~aIrAIg~lA~k 398 (746)
T PTZ00429 362 TPSVAPEIL-----KELAEYASG-VDMVFVVEVVRAIASLAIK 398 (746)
T ss_pred CcccHHHHH-----HHHHHHhhc-CCHHHHHHHHHHHHHHHHh
Confidence 444433322 344555556 6889999999999999754
No 41
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.94 E-value=1.1e-08 Score=97.23 Aligned_cols=117 Identities=26% Similarity=0.319 Sum_probs=104.2
Q ss_pred HHHhcCCHHHHHHHhcCCChhHHHHHHHHHHHhccC-hhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcC
Q 001733 387 MIAETMDISILIKLLSSSHRPVRHESLLLLLELSST-RSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLER 465 (1019)
Q Consensus 387 ~I~~~g~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~-~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~ 465 (1019)
.+++.|+++.++.+|.+++..++..|+.+|.+++.. ++.+..+.. .|+++.|+.++. .+++.++..|+.+|.||+.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~~i~~l~~~l~--~~~~~v~~~a~~~L~~l~~ 78 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVE-AGGLPALVQLLK--SEDEEVVKAALWALRNLAA 78 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHH-CCChHHHHHHHh--CCCHHHHHHHHHHHHHHcc
Confidence 356889999999999999999999999999999997 677777754 799999999996 4688999999999999997
Q ss_pred CCC-chHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 001733 466 NPD-NIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVL 506 (1019)
Q Consensus 466 ~~~-n~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~ 506 (1019)
++. .+..+.+.|+++.|+++|.+++.+++..++++|.+|+.
T Consensus 79 ~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 79 GPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred CcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 764 56777889999999999999999999999999999873
No 42
>PTZ00429 beta-adaptin; Provisional
Probab=98.94 E-value=7.6e-05 Score=91.59 Aligned_cols=418 Identities=10% Similarity=0.065 Sum_probs=256.4
Q ss_pred HHHHHHHhcccccchHHH--hcCChHHHHHHhhcCCHHHHHHHHHHH-HhhccCChhHHHHHHhcCCHHHHHHHhcCCCh
Q 001733 330 KDLQTVCQRKQYNKVQVR--NVGVLPLLTKLLEYKDRNVRCAAMELL-RQLVVEDDEGKEMIAETMDISILIKLLSSSHR 406 (1019)
Q Consensus 330 ~~L~~l~~~~~~~r~~i~--~~g~i~~Lv~lL~s~~~~~~~~Al~~L-~~La~~~~~~k~~I~~~g~i~~Lv~lL~~~~~ 406 (1019)
+.|+.--++.+.....+. ..|=+.-|-..|.+.+...+..|++.+ ..++.+. +. ....+.+++++.+.+.
T Consensus 10 ~~~~~~~~~~~~~~~~f~~~~kge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~-Dv------S~LF~dVvk~~~S~d~ 82 (746)
T PTZ00429 10 ERIQRKLEETKTGSKYFAQTRRGEGAELQNDLNGTDSYRKKAAVKRIIANMTMGR-DV------SYLFVDVVKLAPSTDL 82 (746)
T ss_pred HHHHHHhhcCCCccccccccccchHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC-Cc------hHHHHHHHHHhCCCCH
Confidence 444444444443333332 234466677888888888888888644 4444222 11 2356778889999999
Q ss_pred hHHHHHHHHHHHhccChhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHHHhcCChHHHHHHh
Q 001733 407 PVRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHL 486 (1019)
Q Consensus 407 ~~r~~Aa~~L~~Ls~~~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~lL 486 (1019)
+.+...--.|.+++....... .-+|..|.+=+ .+.+|.++..|+.+|.++-. ..+++. .++++.+.|
T Consensus 83 elKKLvYLYL~~ya~~~pela-----lLaINtl~KDl--~d~Np~IRaLALRtLs~Ir~-----~~i~e~-l~~~lkk~L 149 (746)
T PTZ00429 83 ELKKLVYLYVLSTARLQPEKA-----LLAVNTFLQDT--TNSSPVVRALAVRTMMCIRV-----SSVLEY-TLEPLRRAV 149 (746)
T ss_pred HHHHHHHHHHHHHcccChHHH-----HHHHHHHHHHc--CCCCHHHHHHHHHHHHcCCc-----HHHHHH-HHHHHHHHh
Confidence 999998888888876332111 12345555555 35678888888887776543 123322 456778888
Q ss_pred ccCCHHHHHHHHHHHHHhcc-Cccccccccc-chHHHHHHHHhcCChHHHHHHHHHHHHhhcCCcchHHHHHcCcHHHHH
Q 001733 487 NEGSEEIQMEMASYLGEIVL-GHDSKINVPG-RAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMA 564 (1019)
Q Consensus 487 ~~~~~~~~~~aa~~L~~La~-~~~~~~~i~~-~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~~~~l~~~G~v~~Lv 564 (1019)
.+.++-++..|+-++.++-. +++ .+.+ +.++.|.++|.+.++.+..+|+.+|..+....+.. .-...+.+..|+
T Consensus 150 ~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~-l~l~~~~~~~Ll 225 (746)
T PTZ00429 150 ADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK-IESSNEWVNRLV 225 (746)
T ss_pred cCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh-hHHHHHHHHHHH
Confidence 89999999999999999865 332 3323 46889999999999999999999999998665432 112244455565
Q ss_pred HHHhhhccCCCChhHHHHHHHHHHHHHhcCCCcccccccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC
Q 001733 565 EEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKS 644 (1019)
Q Consensus 565 ~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~La~~ 644 (1019)
..|...+ .-.|-....+|. .-.+... -....++..+...|++ .++.+...|++++..+...
T Consensus 226 ~~L~e~~-----EW~Qi~IL~lL~---~y~P~~~----------~e~~~il~~l~~~Lq~-~N~AVVl~Aik~il~l~~~ 286 (746)
T PTZ00429 226 YHLPECN-----EWGQLYILELLA---AQRPSDK----------ESAETLLTRVLPRMSH-QNPAVVMGAIKVVANLASR 286 (746)
T ss_pred HHhhcCC-----hHHHHHHHHHHH---hcCCCCc----------HHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhcCc
Confidence 5554321 234444444442 2111100 1235788889999998 8999999999999999764
Q ss_pred CCchHHHHH-HHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHhCcCCChhHHHHhhhcCCChhHhhcccCCCCcChHHHH
Q 001733 645 PKPMATIVS-VIKETEASYSLLEVINNPHDELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCPTETIHITEKQA 723 (1019)
Q Consensus 645 ~~~~~~i~~-~i~~~g~i~~Lv~LL~~~~~~vr~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~LV~lL~~~~~~~~~~~ 723 (1019)
.. ....+ .+. ....+|+.|+ ++++++|..+++.+..+....+.-+... +..+.-. .++ ...++.
T Consensus 287 ~~--~~~~~~~~~--rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~~~P~lf~~~-------~~~Ff~~--~~D-p~yIK~ 351 (746)
T PTZ00429 287 CS--QELIERCTV--RVNTALLTLS-RRDAETQYIVCKNIHALLVIFPNLLRTN-------LDSFYVR--YSD-PPFVKL 351 (746)
T ss_pred CC--HHHHHHHHH--HHHHHHHHhh-CCCccHHHHHHHHHHHHHHHCHHHHHHH-------HHhhhcc--cCC-cHHHHH
Confidence 32 12222 111 1225667664 5678999999988877764333222211 2222222 233 246899
Q ss_pred HHHHHHhccCCCChhhHHHHHhCCChHHHHHHHHhhhccCCCccchhhhHHHHHHHHHHHHhcCCCchhHHHHHHhCCch
Q 001733 724 VSAKFLAKLPHQNLTLNLALSARNVVPTILQTINLIQRSGTRTSRYASAYLEGLIGILVRFTTTLYEPQILFLARTHNFT 803 (1019)
Q Consensus 724 ~A~~~L~nL~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~lt~~~~~~~~~~~~~~~g~i 803 (1019)
..+.+|..++. +....+.+ ..|.....+ ....+...++.++.+++.. -|... ...+
T Consensus 352 ~KLeIL~~Lan-e~Nv~~IL------~EL~eYa~d----------~D~ef~r~aIrAIg~lA~k--~~~~a-----~~cV 407 (746)
T PTZ00429 352 EKLRLLLKLVT-PSVAPEIL------KELAEYASG----------VDMVFVVEVVRAIASLAIK--VDSVA-----PDCA 407 (746)
T ss_pred HHHHHHHHHcC-cccHHHHH------HHHHHHhhc----------CCHHHHHHHHHHHHHHHHh--ChHHH-----HHHH
Confidence 99999999875 33332222 233333321 2345677788888887753 23322 2456
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHhhhcc
Q 001733 804 SVFTELLMKTSCDEVQKLAAIGLENLSS 831 (1019)
Q Consensus 804 ~~Lv~LL~~~~~~~vk~~AA~aL~nLs~ 831 (1019)
..|++++.. +.. +...+...+.++..
T Consensus 408 ~~Ll~ll~~-~~~-~v~e~i~vik~Ilr 433 (746)
T PTZ00429 408 NLLLQIVDR-RPE-LLPQVVTAAKDIVR 433 (746)
T ss_pred HHHHHHhcC-Cch-hHHHHHHHHHHHHH
Confidence 778888887 544 34467788877754
No 43
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.88 E-value=2e-09 Score=120.26 Aligned_cols=71 Identities=21% Similarity=0.341 Sum_probs=64.4
Q ss_pred cCCCCccccccCcccCCCceecCCCccccHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCccCHhHHHHHHHHHHH
Q 001733 228 EPLYETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVALKTTIEEWKDR 303 (1019)
Q Consensus 228 ~~~~~~~~Cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~~~~l~pn~~Lr~~I~~w~~~ 303 (1019)
+.+...|+||||.++|++||+++|||+||+.||..|+.. ...||.|+..+....+.+|+.|.++|+.|...
T Consensus 21 ~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-----~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~~ 91 (397)
T TIGR00599 21 YPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-----QPKCPLCRAEDQESKLRSNWLVSEIVESFKNL 91 (397)
T ss_pred cccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-----CCCCCCCCCccccccCccchHHHHHHHHHHHh
Confidence 457789999999999999999999999999999999986 34799999999888899999999999998754
No 44
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.87 E-value=9.6e-07 Score=100.53 Aligned_cols=323 Identities=11% Similarity=0.097 Sum_probs=222.7
Q ss_pred CChHHHHHHhhc-CCHHHHHHHHHHHHhhccCChhHHHHHHh-----cCCHHHHHHHhcCCChhHHHHHHHHHHHhccCh
Q 001733 350 GVLPLLTKLLEY-KDRNVRCAAMELLRQLVVEDDEGKEMIAE-----TMDISILIKLLSSSHRPVRHESLLLLLELSSTR 423 (1019)
Q Consensus 350 g~i~~Lv~lL~s-~~~~~~~~Al~~L~~La~~~~~~k~~I~~-----~g~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~~ 423 (1019)
..+..++++|+. ++.++....+..+..+...++.--..+.+ .....+++.+|.+++.-+...|..+|..|....
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence 467788888875 57788888888888887555443334444 356788889999888889999999998886532
Q ss_pred hhhhhhhcccchHH----HHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHHHhcCChHHHHHHhccC--CHHHHHHH
Q 001733 424 SLCEKIGSIPGGIL----VLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEG--SEEIQMEM 497 (1019)
Q Consensus 424 ~~~~~i~~~~g~I~----~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~lL~~~--~~~~~~~a 497 (1019)
.... ....++ -|...+.+ ..+...+..|+.+|..|...+..|..+.+.+++++|+.+|+.. +...+.++
T Consensus 133 ~~~~----~~~~l~~~~~~l~~~l~~-~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ 207 (429)
T cd00256 133 LAKM----EGSDLDYYFNWLKEQLNN-ITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQS 207 (429)
T ss_pred cccc----chhHHHHHHHHHHHHhhc-cCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHH
Confidence 2110 011232 34444542 2456778888899999999999999999999999999999853 45888999
Q ss_pred HHHHHHhccCccccccccc-chHHHHHHHHhcC-ChHHHHHHHHHHHHhhcCCc-------chHHHHHcCcHHHHHHHHh
Q 001733 498 ASYLGEIVLGHDSKINVPG-RAASTLIRMVHSG-NSLTRRIAFKALMQISSHHP-------SCKILVEAGIVQVMAEEMF 568 (1019)
Q Consensus 498 a~~L~~La~~~~~~~~i~~-~~i~~Lv~lL~~~-~~~~~~~A~~aL~~Ls~~~~-------~~~~l~~~G~v~~Lv~lL~ 568 (1019)
+-+++-|+-+++......+ +.++.|+++++.. ..++.+.++.+|.||...+. ....|++.|+.+.+ +.|.
T Consensus 208 ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l-~~L~ 286 (429)
T cd00256 208 IFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTL-QSLE 286 (429)
T ss_pred HHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHH-HHHh
Confidence 9999999998776655555 4799999999874 46788999999999987541 24567777876655 4455
Q ss_pred hhccCCCChhHHHHHHHHHHHHHh-----------------cCCCcccccccccCcccch----------hhhHHHHHHH
Q 001733 569 IRIIHNEPMNSKEEAAAILANILE-----------------SGLEHHSLQVNSHGHTMVS----------DYVVYNIIYM 621 (1019)
Q Consensus 569 ~~~~~~~~~~~~~~A~~~L~~L~~-----------------~~~~~~~~~v~~~g~~l~~----------~~~i~~Ll~L 621 (1019)
..... ++++.+....+-..|-. +.-.| -++|.. ..++. -.++..|+.+
T Consensus 287 ~rk~~--DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~W--Sp~H~s-e~FW~EN~~kf~~~~~~llk~L~~i 361 (429)
T cd00256 287 QRKYD--DEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHW--SPVHKS-EKFWRENADRLNEKNYELLKILIHL 361 (429)
T ss_pred cCCCC--cHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccC--CCCCCC-chHHHHHHHHHHhcchHHHHHHHHH
Confidence 44322 23444333222111111 11111 011110 11111 2467899999
Q ss_pred HcCCCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHh
Q 001733 622 LKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTL 686 (1019)
Q Consensus 622 L~~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~~vr~~A~~~L~~L 686 (1019)
|..+.++.+..-|+.=+..++++-+.+ +..+.+.|+=..+.+|++++|++||..|+.++..|
T Consensus 362 L~~s~d~~~laVAc~Dige~vr~~P~g---r~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQkl 423 (429)
T cd00256 362 LETSVDPIILAVACHDIGEYVRHYPRG---KDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKL 423 (429)
T ss_pred HhcCCCcceeehhhhhHHHHHHHCccH---HHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 976577888888888888888876543 44566788888888999999999999999988655
No 45
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=6.6e-07 Score=102.11 Aligned_cols=353 Identities=13% Similarity=0.091 Sum_probs=226.0
Q ss_pred CChHHHHHHhhcCCHHHHHHHHHHHHhhccCChhHHHHHH--h--cCCHHHHHHHhcCCChhHHHHHHHHHHHhccCh--
Q 001733 350 GVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIA--E--TMDISILIKLLSSSHRPVRHESLLLLLELSSTR-- 423 (1019)
Q Consensus 350 g~i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~--~--~g~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~~-- 423 (1019)
.+.|.|..+|.+.+...++.|..+|..++.++.+.-..=+ + .-.||.++.+.++.++.+|..|+.++...-...
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~q 207 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQ 207 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcH
Confidence 4689999999999999999999999999854433211111 1 125899999999999999999999987765432
Q ss_pred hhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHHHh--cCChHHHHHHhccCCHHHHHHHHHHH
Q 001733 424 SLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAE--NGLLEPLMHHLNEGSEEIQMEMASYL 501 (1019)
Q Consensus 424 ~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~--~G~i~~Lv~lL~~~~~~~~~~aa~~L 501 (1019)
..-..| ...+..|..+- ..+++++++..+.+|.-|...... +++- .|+|+-++..-++.++++..+|+...
T Consensus 208 al~~~i---D~Fle~lFala--nD~~~eVRk~vC~alv~Llevr~d--kl~phl~~IveyML~~tqd~dE~VALEACEFw 280 (885)
T KOG2023|consen 208 ALYVHI---DKFLEILFALA--NDEDPEVRKNVCRALVFLLEVRPD--KLVPHLDNIVEYMLQRTQDVDENVALEACEFW 280 (885)
T ss_pred HHHHHH---HHHHHHHHHHc--cCCCHHHHHHHHHHHHHHHHhcHH--hcccchHHHHHHHHHHccCcchhHHHHHHHHH
Confidence 222222 33455555555 467899999999999988643222 2221 26777778878888899999999999
Q ss_pred HHhccCccccccccc---chHHHHHHH----------HhcC-C-------------------------------------
Q 001733 502 GEIVLGHDSKINVPG---RAASTLIRM----------VHSG-N------------------------------------- 530 (1019)
Q Consensus 502 ~~La~~~~~~~~i~~---~~i~~Lv~l----------L~~~-~------------------------------------- 530 (1019)
..+|..+-.+..+.. ..+|.|++- |.+. .
T Consensus 281 la~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~ 360 (885)
T KOG2023|consen 281 LALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDED 360 (885)
T ss_pred HHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccc
Confidence 999998866666654 257777642 2200 0
Q ss_pred --------hHHHHHHHHHHHHhhcCCcchHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCcccccc
Q 001733 531 --------SLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQV 602 (1019)
Q Consensus 531 --------~~~~~~A~~aL~~Ls~~~~~~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v 602 (1019)
-.+|++++.+|--|+. +.....++.++-+|+..-.+ ..=.+||.+.-+|..++.++...-
T Consensus 361 DDdD~~~dWNLRkCSAAaLDVLan-------vf~~elL~~l~PlLk~~L~~-~~W~vrEagvLAlGAIAEGcM~g~---- 428 (885)
T KOG2023|consen 361 DDDDAFSDWNLRKCSAAALDVLAN-------VFGDELLPILLPLLKEHLSS-EEWKVREAGVLALGAIAEGCMQGF---- 428 (885)
T ss_pred ccccccccccHhhccHHHHHHHHH-------hhHHHHHHHHHHHHHHHcCc-chhhhhhhhHHHHHHHHHHHhhhc----
Confidence 1234444444444432 22234455555555543211 112567888888889988864321
Q ss_pred cccCcccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCCCHHHHHHHHHH
Q 001733 603 NSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKL 682 (1019)
Q Consensus 603 ~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~~vr~~A~~~ 682 (1019)
. -.-...|+-|+++|.. ..+-+|.-.+|+|+.-+..--..+. .+.+. ..+..|+..+-+++..||++|+.+
T Consensus 429 ~-----p~LpeLip~l~~~L~D-KkplVRsITCWTLsRys~wv~~~~~-~~~f~--pvL~~ll~~llD~NK~VQEAAcsA 499 (885)
T KOG2023|consen 429 V-----PHLPELIPFLLSLLDD-KKPLVRSITCWTLSRYSKWVVQDSR-DEYFK--PVLEGLLRRLLDSNKKVQEAACSA 499 (885)
T ss_pred c-----cchHHHHHHHHHHhcc-CccceeeeeeeeHhhhhhhHhcCCh-HhhhH--HHHHHHHHHHhcccHHHHHHHHHH
Confidence 1 1124678999999998 8999999999999886542211000 01111 233445555668889999999999
Q ss_pred HHHhCcCCChhHHHHhhhcCCChhHhhcccCCCCc-ChHHHHHHHHHHhccC
Q 001733 683 LTTLSPYLGHTLVERLCKTRGQPENLIQCPTETIH-ITEKQAVSAKFLAKLP 733 (1019)
Q Consensus 683 L~~Ls~~~~~~~~~~l~~~~g~i~~LV~lL~~~~~-~~~~~~~A~~~L~nL~ 733 (1019)
+..+-...+.+.+..+. ..+..|+..++.=.. +--+...|.|.|+.-.
T Consensus 500 fAtleE~A~~eLVp~l~---~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsv 548 (885)
T KOG2023|consen 500 FATLEEEAGEELVPYLE---YILDQLVFAFGKYQKKNLLILYDAIGTLADSV 548 (885)
T ss_pred HHHHHHhccchhHHHHH---HHHHHHHHHHHHHhhcceehHHHHHHHHHHHH
Confidence 99998766666666554 345555554432110 2234456777766543
No 46
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.81 E-value=2.6e-09 Score=106.15 Aligned_cols=62 Identities=18% Similarity=0.237 Sum_probs=52.1
Q ss_pred CCCccccccCcccCCCceecCCCccccHHHHHHHHhhhc-----------cCCCCCCCCCCCCCCCCCCccCH
Q 001733 230 LYETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFE-----------TSGDIFCPTTGKKLMSRGLNTNV 291 (1019)
Q Consensus 230 ~~~~~~Cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~-----------~~~~~~cP~~~~~l~~~~l~pn~ 291 (1019)
..++|.||||.+.++|||+++|||.||+.||.+|+.... .++...||.|+.+++...++|.+
T Consensus 15 ~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 15 SGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred CCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 556899999999999999999999999999999986310 01246899999999888888875
No 47
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=1.5e-06 Score=101.70 Aligned_cols=198 Identities=14% Similarity=0.084 Sum_probs=156.4
Q ss_pred CChHHHHHHhcc-CCHHHHHHHHHHHHHhcc-Cccccccccc-chHHHHHHHHh-cCChHHHHHHHHHHHHhhcCCcchH
Q 001733 477 GLLEPLMHHLNE-GSEEIQMEMASYLGEIVL-GHDSKINVPG-RAASTLIRMVH-SGNSLTRRIAFKALMQISSHHPSCK 552 (1019)
Q Consensus 477 G~i~~Lv~lL~~-~~~~~~~~aa~~L~~La~-~~~~~~~i~~-~~i~~Lv~lL~-~~~~~~~~~A~~aL~~Ls~~~~~~~ 552 (1019)
-.||.|+.+|+. .+.+++..|+++|.+|+. .|.....+++ ++||.|++-|. -...++.|+++.+|-.|+..++-
T Consensus 211 slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~-- 288 (1051)
T KOG0168|consen 211 SLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK-- 288 (1051)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH--
Confidence 478999999985 568999999999999998 7888887777 68999997544 46788999999999999987654
Q ss_pred HHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCcccccccccCcccchhhhHHHHHHHHcCCCCHHHHH
Q 001733 553 ILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNV 632 (1019)
Q Consensus 553 ~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~ 632 (1019)
.+.++|++...+..|.--. ..+|+.|.++-+|+|++-..-+ + -.-...+|.|-.+|+. .+...-+
T Consensus 289 AiL~AG~l~a~LsylDFFS-----i~aQR~AlaiaaN~Cksi~sd~-f--------~~v~ealPlL~~lLs~-~D~k~ie 353 (1051)
T KOG0168|consen 289 AILQAGALSAVLSYLDFFS-----IHAQRVALAIAANCCKSIRSDE-F--------HFVMEALPLLTPLLSY-QDKKPIE 353 (1051)
T ss_pred HHHhcccHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcCCCcc-c--------hHHHHHHHHHHHHHhh-ccchhHH
Confidence 8899999998888775432 4789999999999998743221 1 1224678999999998 8888889
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCCCH----HHHHHHHHHHHHhCcCCC
Q 001733 633 HLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHD----ELAVAAIKLLTTLSPYLG 691 (1019)
Q Consensus 633 ~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~----~vr~~A~~~L~~Ls~~~~ 691 (1019)
.++-++..++.......+..+.+...|.+....+|+.-... .+....++.|..||.+..
T Consensus 354 s~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~p 416 (1051)
T KOG0168|consen 354 SVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSP 416 (1051)
T ss_pred HHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCCh
Confidence 99999999887665556666778888999988888876542 456666778888886533
No 48
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=2.5e-06 Score=100.00 Aligned_cols=388 Identities=15% Similarity=0.152 Sum_probs=257.3
Q ss_pred cccCCHHHHHHHHHHHHH-HHhcccccchHHHhcCChHHHHHHhhcC-CHHHHHHHHHHHHhhccCChhHHHHHHhcCCH
Q 001733 317 SLAGSDRMVLEAIKDLQT-VCQRKQYNKVQVRNVGVLPLLTKLLEYK-DRNVRCAAMELLRQLVVEDDEGKEMIAETMDI 394 (1019)
Q Consensus 317 ~~~~~~~~~~~Al~~L~~-l~~~~~~~r~~i~~~g~i~~Lv~lL~s~-~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i 394 (1019)
...+++..|++|+.+|-. +.-.+++.-..+.-.-.||.|+.+|+.. +.+++..|+++|.+|+.--+..-..+++.++|
T Consensus 177 ~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aI 256 (1051)
T KOG0168|consen 177 QAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAI 256 (1051)
T ss_pred cccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccch
Confidence 334567778888888754 3334444322333345799999999974 89999999999999997777888888999999
Q ss_pred HHHHHHhcC-CChhHHHHHHHHHHHhccChhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcC--CCCchH
Q 001733 395 SILIKLLSS-SHRPVRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLER--NPDNIK 471 (1019)
Q Consensus 395 ~~Lv~lL~~-~~~~~r~~Aa~~L~~Ls~~~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~--~~~n~~ 471 (1019)
|.|+.-|.. .-.++-+.+..+|-.+|.... ..|-+ .|+|...+..|.- =+..+++.|+.+-.|.|. .++.-.
T Consensus 257 Pvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~--~AiL~-AG~l~a~LsylDF--FSi~aQR~AlaiaaN~Cksi~sd~f~ 331 (1051)
T KOG0168|consen 257 PVLLEKLLTIEYIDVAEQSLQALEKISRRHP--KAILQ-AGALSAVLSYLDF--FSIHAQRVALAIAANCCKSIRSDEFH 331 (1051)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--HHHHh-cccHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCCccch
Confidence 999966644 567899999999999998542 22333 7888888887742 235679999999999984 344444
Q ss_pred HHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC-ccc--c-ccccc-chHHHHHHHHhcC----ChHHHHHHHHHHH
Q 001733 472 CMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLG-HDS--K-INVPG-RAASTLIRMVHSG----NSLTRRIAFKALM 542 (1019)
Q Consensus 472 ~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~-~~~--~-~~i~~-~~i~~Lv~lL~~~----~~~~~~~A~~aL~ 542 (1019)
.+++ ++|.|..+|...+....+.++-++..++.. ..+ + ..+.. +.+....++|... +......-++.|.
T Consensus 332 ~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls 409 (1051)
T KOG0168|consen 332 FVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLS 409 (1051)
T ss_pred HHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHH
Confidence 5554 789999999988888888888888888752 222 2 23333 3466667776543 1234555667777
Q ss_pred HhhcCCc-chHHHHHcCcHHHHHHHHhhhccC----------CCChhHHHHHHHHHHHHHhcCCC---------------
Q 001733 543 QISSHHP-SCKILVEAGIVQVMAEEMFIRIIH----------NEPMNSKEEAAAILANILESGLE--------------- 596 (1019)
Q Consensus 543 ~Ls~~~~-~~~~l~~~G~v~~Lv~lL~~~~~~----------~~~~~~~~~A~~~L~~L~~~~~~--------------- 596 (1019)
.+|++.+ ....+.+.++...|..+|...+.. -.|.++-+--.-+..-|-....+
T Consensus 410 ~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n 489 (1051)
T KOG0168|consen 410 LMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVN 489 (1051)
T ss_pred HHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhccccc
Confidence 7887754 477888889888888887643311 01111111111100000000000
Q ss_pred ---------------------------------c------cccc-ccccCcccch---------hhhHHHHHHHHcCCCC
Q 001733 597 ---------------------------------H------HSLQ-VNSHGHTMVS---------DYVVYNIIYMLKNSTP 627 (1019)
Q Consensus 597 ---------------------------------~------~~~~-v~~~g~~l~~---------~~~i~~Ll~LL~~~~~ 627 (1019)
. ++.. .++....+.. ...++.|++...++.+
T Consensus 490 ~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~~llpVLveVYsSsA~ 569 (1051)
T KOG0168|consen 490 LADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGKDLLPVLVEVYSSSAN 569 (1051)
T ss_pred ccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHHHHHHHHHHHHhccCC
Confidence 0 0000 0000011111 2456777777777789
Q ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHhCcCCChhHHHHhhhcCCChhH
Q 001733 628 DELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPEN 707 (1019)
Q Consensus 628 ~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~~vr~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~ 707 (1019)
+.++..++++|..+...... +-++..++....-..+-..|.+.+..+...|+...-.|....++.+...+.++ |.+..
T Consensus 570 ~~VR~kcL~Ailrlvy~s~s-eli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~~~F~RE-GV~~~ 647 (1051)
T KOG0168|consen 570 PDVRYKCLSAILRLVYFSNS-ELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPDTFSPSFRRE-GVFHA 647 (1051)
T ss_pred chhhHHHHHHHHHHHhhCCH-HHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHHHhhhhHhhh-hHHHH
Confidence 99999999999999887764 56666777767777777899999999999999888888876677777777754 44443
Q ss_pred hhcccC
Q 001733 708 LIQCPT 713 (1019)
Q Consensus 708 LV~lL~ 713 (1019)
.-.|..
T Consensus 648 v~~L~~ 653 (1051)
T KOG0168|consen 648 VKQLSV 653 (1051)
T ss_pred HHHHhc
Confidence 333443
No 49
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=1.5e-08 Score=102.60 Aligned_cols=72 Identities=31% Similarity=0.446 Sum_probs=67.8
Q ss_pred CCCccccccCcccCCCceecCCCccccHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCccCHhHHHHHHHHHHHch
Q 001733 230 LYETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVALKTTIEEWKDRND 305 (1019)
Q Consensus 230 ~~~~~~Cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~~~~l~pn~~Lr~~I~~w~~~~~ 305 (1019)
+|+-++|-|+.++|+|||+.|+|.||+|..|++++.+ -.++.|+|+.+|....++||++|+..|..|...|+
T Consensus 208 vpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~r----vghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~ 279 (284)
T KOG4642|consen 208 VPDYLCGKITLELMREPVITPSGITYDRADIEEHLQR----VGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENE 279 (284)
T ss_pred ccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHH----hccCCchhcccCCHHhhccchHHHHHHHHHHHhcc
Confidence 8899999999999999999999999999999999998 45679999999999999999999999999998875
No 50
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.66 E-value=4.9e-07 Score=101.34 Aligned_cols=228 Identities=18% Similarity=0.196 Sum_probs=162.6
Q ss_pred ChHHHHHHhhc--CCHHHHHHHHHHHHhhccCChhHHHHHHh------cCCHHHHHHHhcCCChhHHHHHHHHHHHhccC
Q 001733 351 VLPLLTKLLEY--KDRNVRCAAMELLRQLVVEDDEGKEMIAE------TMDISILIKLLSSSHRPVRHESLLLLLELSST 422 (1019)
Q Consensus 351 ~i~~Lv~lL~s--~~~~~~~~Al~~L~~La~~~~~~k~~I~~------~g~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~ 422 (1019)
....++.+|+. ++.++....+..+..+...++.....+.. .....++++++.++|.-++..|+..|..|...
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence 46677777763 58899999999999988666655555544 23678889999999999999999999999876
Q ss_pred hhhhhhhhcccchHHHHHHhhhcC--CCChHHHHHHHHHHHHhcCCCCchHHHHhcCChHHHHHHh-----c--cCCHHH
Q 001733 423 RSLCEKIGSIPGGILVLITFKFNW--SIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHL-----N--EGSEEI 493 (1019)
Q Consensus 423 ~~~~~~i~~~~g~I~~LV~lL~~~--~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~lL-----~--~~~~~~ 493 (1019)
......-.. .+.++.++..+.+. +++.+.+..|+.+|.+|...++.|..+.+.|+++.|+.+| . ..+..+
T Consensus 136 ~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 136 GPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp TTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred CCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence 544333211 46788888888632 2344556889999999999999999999999999999999 2 234678
Q ss_pred HHHHHHHHHHhccCccccccccc-chHHHHHHHHhcC-ChHHHHHHHHHHHHhhcCCc--chHHHHHcCcHHHHHHHHhh
Q 001733 494 QMEMASYLGEIVLGHDSKINVPG-RAASTLIRMVHSG-NSLTRRIAFKALMQISSHHP--SCKILVEAGIVQVMAEEMFI 569 (1019)
Q Consensus 494 ~~~aa~~L~~La~~~~~~~~i~~-~~i~~Lv~lL~~~-~~~~~~~A~~aL~~Ls~~~~--~~~~l~~~G~v~~Lv~lL~~ 569 (1019)
+.+++-++|.|+-+++....+.. +.++.|+++++.. ..++.+.++.+|.||..... +...|+..|+.+.+-.+..
T Consensus 215 ~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~- 293 (312)
T PF03224_consen 215 QYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE- 293 (312)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS-
T ss_pred HHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc-
Confidence 88999999999999998888866 5789999999874 57899999999999998887 6888898888877755444
Q ss_pred hccCCCChhHHHH
Q 001733 570 RIIHNEPMNSKEE 582 (1019)
Q Consensus 570 ~~~~~~~~~~~~~ 582 (1019)
... .++++.+.
T Consensus 294 rk~--~Dedl~ed 304 (312)
T PF03224_consen 294 RKW--SDEDLTED 304 (312)
T ss_dssp S----SSHHHHHH
T ss_pred CCC--CCHHHHHH
Confidence 332 12455544
No 51
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=5.9e-06 Score=96.37 Aligned_cols=334 Identities=13% Similarity=0.077 Sum_probs=234.5
Q ss_pred CCHHHHHHHhcCC-ChhHHHHHHHHHHHhccChhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCC--
Q 001733 392 MDISILIKLLSSS-HRPVRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPD-- 468 (1019)
Q Consensus 392 g~i~~Lv~lL~~~-~~~~r~~Aa~~L~~Ls~~~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~-- 468 (1019)
..|+.|+.-+.+. -.+-|+.|+..|..+|. .+|..+| .-|+++|+..|..+..|++..+.++.++.++..+++
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~sr--kYR~~Vg--a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~ 97 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSR--KYREEVG--AQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSP 97 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHH--HHHHHHH--HcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcch
Confidence 3577777666553 35789999999999876 6777776 578999999998888899999999999999987663
Q ss_pred ----c-h----------HHHH-hcCChHHHHHHhccCCHHHHHHHHHHHHHhccC--ccccccccc--chHHHHHHHHhc
Q 001733 469 ----N-I----------KCMA-ENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLG--HDSKINVPG--RAASTLIRMVHS 528 (1019)
Q Consensus 469 ----n-~----------~~i~-~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~--~~~~~~i~~--~~i~~Lv~lL~~ 528 (1019)
+ + ..++ ..+-|..|+..+...+-.++..++..|.+|-.+ .+.+..+.. .||..|+.+|++
T Consensus 98 ~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D 177 (970)
T KOG0946|consen 98 EVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD 177 (970)
T ss_pred hhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence 2 1 1233 348899999999988999999999999998764 455666644 389999999999
Q ss_pred CChHHHHHHHHHHHHhhcCCcchHHHHH-cCcHHHHHHHHhhhc-cCCCChhHHHHHHHHHHHHHhcCCCcccccccccC
Q 001733 529 GNSLTRRIAFKALMQISSHHPSCKILVE-AGIVQVMAEEMFIRI-IHNEPMNSKEEAAAILANILESGLEHHSLQVNSHG 606 (1019)
Q Consensus 529 ~~~~~~~~A~~aL~~Ls~~~~~~~~l~~-~G~v~~Lv~lL~~~~-~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g 606 (1019)
....+|..++-.|..|..+.++.+.++. ..+...|..++...| .++ .-+.+.|...|.||.+.+...++
T Consensus 178 srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dG--gIVveDCL~ll~NLLK~N~SNQ~------- 248 (970)
T KOG0946|consen 178 SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDG--GIVVEDCLILLNNLLKNNISNQN------- 248 (970)
T ss_pred hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCC--cchHHHHHHHHHHHHhhCcchhh-------
Confidence 8888999999999999999988777766 789999999998765 221 24678999999999998776664
Q ss_pred cccchhhhHHHHHHHHcCC--CC-------HHHHH---HHHHHHHHHhCCCC---chHHHHHHHHHcCChHHHHHhhcCC
Q 001733 607 HTMVSDYVVYNIIYMLKNS--TP-------DELNV---HLIRILQCLTKSPK---PMATIVSVIKETEASYSLLEVINNP 671 (1019)
Q Consensus 607 ~~l~~~~~i~~Ll~LL~~~--~~-------~~v~~---~a~~aL~~La~~~~---~~~~i~~~i~~~g~i~~Lv~LL~~~ 671 (1019)
.+...+.|++|.++|... .+ +.--. .++.++..+..-.. ......+++...+++..|..++.++
T Consensus 249 -~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~ 327 (970)
T KOG0946|consen 249 -FFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHP 327 (970)
T ss_pred -HHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCC
Confidence 466788999999888652 11 11111 23333344433221 1122235788999999999988877
Q ss_pred C--HHHHHHHHHHHHHhCcCCChhHHHHhhhc-CC--------ChhHhhcccCCCCcChHHHHHHHHHHhccCCCChhhH
Q 001733 672 H--DELAVAAIKLLTTLSPYLGHTLVERLCKT-RG--------QPENLIQCPTETIHITEKQAVSAKFLAKLPHQNLTLN 740 (1019)
Q Consensus 672 ~--~~vr~~A~~~L~~Ls~~~~~~~~~~l~~~-~g--------~i~~LV~lL~~~~~~~~~~~~A~~~L~nL~~~~~~~~ 740 (1019)
. .+|+..+.-++...-++... .++.+... .. .+-.|+.+..+.. ....|.+...++..+...|....
T Consensus 328 ~vp~dIltesiitvAevVRgn~~-nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q-~~~lRcAv~ycf~s~l~dN~~gq 405 (970)
T KOG0946|consen 328 GVPADILTESIITVAEVVRGNAR-NQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQ-PFSLRCAVLYCFRSYLYDNDDGQ 405 (970)
T ss_pred CCcHhHHHHHHHHHHHHHHhchH-HHHHHhhccCCCCCCCccchhHHHHHHHhccC-CchHHHHHHHHHHHHHhcchhhH
Confidence 4 37888888888877754332 22222221 00 1112333333333 34566666666665555455444
Q ss_pred H
Q 001733 741 L 741 (1019)
Q Consensus 741 ~ 741 (1019)
.
T Consensus 406 ~ 406 (970)
T KOG0946|consen 406 R 406 (970)
T ss_pred H
Confidence 4
No 52
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.57 E-value=1e-06 Score=98.69 Aligned_cols=214 Identities=14% Similarity=0.070 Sum_probs=158.4
Q ss_pred CCHHHHHHHHHHHHHHHhcccccchHHHh------cCChHHHHHHhhcCCHHHHHHHHHHHHhhccCChhHHHHHHhcCC
Q 001733 320 GSDRMVLEAIKDLQTVCQRKQYNKVQVRN------VGVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMD 393 (1019)
Q Consensus 320 ~~~~~~~~Al~~L~~l~~~~~~~r~~i~~------~g~i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~ 393 (1019)
..++.+...+.-+-++..+++.....+.. ...+.++++++.++|..++..|+..|..+....+...... ..+.
T Consensus 69 ~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~-~~~~ 147 (312)
T PF03224_consen 69 SNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKL-VKEA 147 (312)
T ss_dssp --HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHH-HHHH
T ss_pred CcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccch-HHHH
Confidence 45566677777788888888866655555 2367888899999999999999999999875444433322 2566
Q ss_pred HHHHHHHhcC----CChhHHHHHHHHHHHhccChhhhhhhhcccchHHHHHHhh-----hcCCCChHHHHHHHHHHHHhc
Q 001733 394 ISILIKLLSS----SHRPVRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFK-----FNWSIDVFAAEIADQILRNLE 464 (1019)
Q Consensus 394 i~~Lv~lL~~----~~~~~r~~Aa~~L~~Ls~~~~~~~~i~~~~g~I~~LV~lL-----~~~~~~~~~~~~A~~aL~nLs 464 (1019)
++.++..|++ .+.+.+..|+.+|.+|...+++|..+.. .|+++.|+.++ ..+..+...+-.++-++|-|+
T Consensus 148 l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~-~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLS 226 (312)
T PF03224_consen 148 LPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK-SNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLS 226 (312)
T ss_dssp HHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT-HHHHHHHHHHHH---------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh-cCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHh
Confidence 7888888775 3456779999999999999999999987 99999999999 345667888999999999999
Q ss_pred CCCCchHHHHhcCChHHHHHHhcc-CCHHHHHHHHHHHHHhccCcc--cccccccchHHHHHHHHhcC---ChHHHH
Q 001733 465 RNPDNIKCMAENGLLEPLMHHLNE-GSEEIQMEMASYLGEIVLGHD--SKINVPGRAASTLIRMVHSG---NSLTRR 535 (1019)
Q Consensus 465 ~~~~n~~~i~~~G~i~~Lv~lL~~-~~~~~~~~aa~~L~~La~~~~--~~~~i~~~~i~~Lv~lL~~~---~~~~~~ 535 (1019)
.+++....+.+.+.|+.|+++++. ..+.+..-+.++|.||...+. ....+..++++++++.|... ++++.+
T Consensus 227 F~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~e 303 (312)
T PF03224_consen 227 FEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTE 303 (312)
T ss_dssp TSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHH
T ss_pred cCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHH
Confidence 999999999999999999999985 468899999999999998655 66666667778888887763 455544
No 53
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.56 E-value=2.4e-08 Score=80.16 Aligned_cols=45 Identities=33% Similarity=0.759 Sum_probs=32.4
Q ss_pred CccccccCcccCCCceec-CCCccccHHHHHHHHhhhccCCCCCCCCCC
Q 001733 232 ETFYCPLTKEIMDDPVTI-ESGVTYERNAITAWFEKFETSGDIFCPTTG 279 (1019)
Q Consensus 232 ~~~~Cpi~~~~m~dPv~~-~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~ 279 (1019)
-.+.||||+..|+|||.- .|||+|||++|.+|+.. .+...||++|
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~---~~~~~CPv~G 55 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQR---NGSKRCPVAG 55 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTT---TS-EE-SCCC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHh---cCCCCCCCCC
Confidence 469999999999999986 99999999999999954 2567899954
No 54
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.56 E-value=9.8e-06 Score=92.44 Aligned_cols=309 Identities=11% Similarity=0.056 Sum_probs=201.2
Q ss_pred cCCHHHHHHHHHHHHHHHhcccccchHHHhc-----CChHHHHHHhhcCCHHHHHHHHHHHHhhccCChhHHHHHHhcCC
Q 001733 319 AGSDRMVLEAIKDLQTVCQRKQYNKVQVRNV-----GVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMD 393 (1019)
Q Consensus 319 ~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~-----g~i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~ 393 (1019)
.+.++.....+.-+-++...++..-..+.+. ....+++.+|..+|.-++..|...|..+......+.......-.
T Consensus 65 ~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~ 144 (429)
T cd00256 65 IDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYY 144 (429)
T ss_pred cCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHH
Confidence 3445555566666667777766543444443 45667778998889999999999999886433322111111112
Q ss_pred HHHHHHHhcCC-ChhHHHHHHHHHHHhccChhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHH
Q 001733 394 ISILIKLLSSS-HRPVRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKC 472 (1019)
Q Consensus 394 i~~Lv~lL~~~-~~~~r~~Aa~~L~~Ls~~~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~ 472 (1019)
.+.+...|+++ +...+..|+.+|..|...+++|..+.. .++++.|+.+|+....+...+-.++-++|-|+.+++....
T Consensus 145 ~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~-~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~ 223 (429)
T cd00256 145 FNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVL-ADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEV 223 (429)
T ss_pred HHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHH-ccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHh
Confidence 33455666654 467888999999999999999987765 6699999999975444678899999999999998887777
Q ss_pred HHhcCChHHHHHHhccC-CHHHHHHHHHHHHHhccCcc-------cccccccchHHHHHHHHhcC---ChHHHH------
Q 001733 473 MAENGLLEPLMHHLNEG-SEEIQMEMASYLGEIVLGHD-------SKINVPGRAASTLIRMVHSG---NSLTRR------ 535 (1019)
Q Consensus 473 i~~~G~i~~Lv~lL~~~-~~~~~~~aa~~L~~La~~~~-------~~~~i~~~~i~~Lv~lL~~~---~~~~~~------ 535 (1019)
+.+.|.|+.|+++++.. .+.+..-++.+|.||...+. ....+...+++++++.|... ++++.+
T Consensus 224 ~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~ 303 (429)
T cd00256 224 LKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLT 303 (429)
T ss_pred hccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 77889999999999854 46788889999999987432 11233444678888877763 333222
Q ss_pred -HHHHHHHHhhcCCc------------------------chHHHHHc--CcHHHHHHHHhhhccCCCChhHHHHHHHHHH
Q 001733 536 -IAFKALMQISSHHP------------------------SCKILVEA--GIVQVMAEEMFIRIIHNEPMNSKEEAAAILA 588 (1019)
Q Consensus 536 -~A~~aL~~Ls~~~~------------------------~~~~l~~~--G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~ 588 (1019)
.--..+..+++.++ |...+-+. -++..|+++|.... .| ....-|+-=+.
T Consensus 304 e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~---d~-~~laVAc~Dig 379 (429)
T cd00256 304 EELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSV---DP-IILAVACHDIG 379 (429)
T ss_pred HHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCC---Cc-ceeehhhhhHH
Confidence 11122223332111 22233332 23567777774321 12 33344444456
Q ss_pred HHHhcCCCcccccccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 001733 589 NILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCL 641 (1019)
Q Consensus 589 ~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~L 641 (1019)
.++..-+... ..+..-|+=..++.|+.+ ++++++.+|+.++..+
T Consensus 380 e~vr~~P~gr--------~i~~~lg~K~~vM~Lm~h-~d~~Vr~eAL~avQkl 423 (429)
T cd00256 380 EYVRHYPRGK--------DVVEQLGGKQRVMRLLNH-EDPNVRYEALLAVQKL 423 (429)
T ss_pred HHHHHCccHH--------HHHHHcCcHHHHHHHhcC-CCHHHHHHHHHHHHHH
Confidence 6655532221 233445666778899999 9999999999998766
No 55
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=5.9e-06 Score=89.83 Aligned_cols=188 Identities=19% Similarity=0.129 Sum_probs=150.3
Q ss_pred ccCCHHHHHHHHHHHHHHHhcccccchHHHhcCChHHHHHHhhcCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHH
Q 001733 318 LAGSDRMVLEAIKDLQTVCQRKQYNKVQVRNVGVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISIL 397 (1019)
Q Consensus 318 ~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~L 397 (1019)
.+.+.+++..|+..|..++..= +|-.-+...|++++++..|.+++..+|+.|+.+|...+..++..++.+.+.|+++.|
T Consensus 93 ~s~~le~ke~ald~Le~lve~i-DnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDI-DNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL 171 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhh-hhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence 3567788999999999999863 344456788999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCh-hHHHHHHHHHHHhccChhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCC-chHHHHh
Q 001733 398 IKLLSSSHR-PVRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPD-NIKCMAE 475 (1019)
Q Consensus 398 v~lL~~~~~-~~r~~Aa~~L~~Ls~~~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~-n~~~i~~ 475 (1019)
+..|.+.++ .+|..|.-++..|-.+...-..-+...+|...|..++.+++.+...++.++..+..|...+. ....+-.
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~ 251 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASS 251 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 999987655 67799999999998876443333334677999999998777889999999999999975433 3343334
Q ss_pred cCChHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 001733 476 NGLLEPLMHHLNEGSEEIQMEMASYLGEIVL 506 (1019)
Q Consensus 476 ~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~ 506 (1019)
.|....++.+....+.++.+.+..++..+..
T Consensus 252 ~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 252 LGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 4666667777777777888888877665544
No 56
>PF05536 Neurochondrin: Neurochondrin
Probab=98.49 E-value=0.00026 Score=84.71 Aligned_cols=423 Identities=14% Similarity=0.100 Sum_probs=231.4
Q ss_pred hHHHHHHhhcCCHHHHHHHHHHHHhhccCChh---HHHHHHhcCCHHHHHHHhcCC-------ChhHHHHHHHHHHHhcc
Q 001733 352 LPLLTKLLEYKDRNVRCAAMELLRQLVVEDDE---GKEMIAETMDISILIKLLSSS-------HRPVRHESLLLLLELSS 421 (1019)
Q Consensus 352 i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~---~k~~I~~~g~i~~Lv~lL~~~-------~~~~r~~Aa~~L~~Ls~ 421 (1019)
+..-+++|++.+...|-.++..+.++...++. .++.|.++=+.+.+-++|+++ ....+.-|+.+|..++.
T Consensus 7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~ 86 (543)
T PF05536_consen 7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR 86 (543)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence 45567888888866677778888888765553 345677877789999999873 24678889999999999
Q ss_pred ChhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHHHhcCChHHHHHHhccCCHHHHHHHHHHH
Q 001733 422 TRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYL 501 (1019)
Q Consensus 422 ~~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L 501 (1019)
.++....= ...+-||.|++.+.. .++.++...|..+|..++.+++.+..+++.|+|+.|++.+.+ .+...+.+..+|
T Consensus 87 ~~~~a~~~-~~~~~IP~Lle~l~~-~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL 163 (543)
T PF05536_consen 87 DPELASSP-QMVSRIPLLLEILSS-SSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLL 163 (543)
T ss_pred ChhhhcCH-HHHHHHHHHHHHHHc-CCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHH
Confidence 77654321 226789999999974 333588999999999999999999999999999999999987 566788899999
Q ss_pred HHhccCccccccccc------chHHHHHHHHhcCChHHHHHHHHHHHHhhcCCcc--hHHHHHcCcHH----HHHHHHhh
Q 001733 502 GEIVLGHDSKINVPG------RAASTLIRMVHSGNSLTRRIAFKALMQISSHHPS--CKILVEAGIVQ----VMAEEMFI 569 (1019)
Q Consensus 502 ~~La~~~~~~~~i~~------~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~--~~~l~~~G~v~----~Lv~lL~~ 569 (1019)
.+++...... .+.+ ..++.|-+.........+-..+..|..+-...+. ........... .|..+|.+
T Consensus 164 ~~Lls~~~~~-~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~s 242 (543)
T PF05536_consen 164 LNLLSRLGQK-SWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQS 242 (543)
T ss_pred HHHHHhcchh-hhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhc
Confidence 9987743322 1212 1234444444444445566677777777554421 11112222222 33344443
Q ss_pred hccCCCChhHHHHHHHHHHHHHhcCCCcccccccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCchH
Q 001733 570 RIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPMA 649 (1019)
Q Consensus 570 ~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~La~~~~~~~ 649 (1019)
. .+..-+..|..+.+.+..... .+-+..+.. .....+..-++++... +++...= .|......+.. .
T Consensus 243 r----~~~~~R~~al~Laa~Ll~~~G-~~wl~~~~~---~~~~~F~~Llv~l~~V----Eir~~L~-~L~~~~~~~~~-~ 308 (543)
T PF05536_consen 243 R----LTPSQRDPALNLAASLLDLLG-PEWLFADDK---KSGKKFLLLLVNLACV----EIRMSLE-ELLEQLNPEEY-P 308 (543)
T ss_pred C----CCHHHHHHHHHHHHHHHHHhC-hHhhcCCCC---CCcccHHHHHHHHHHH----HHHHHhH-HhhhcCCchhh-H
Confidence 3 233455555554444444311 111111110 1112344444444332 1111100 00000000000 0
Q ss_pred HHHHHHH-HcCChHHHHHhhcC----CC----HHHHHHHHHHHHHhCcCCChhHHHHhhhcCCChhHhhcccCCCCcChH
Q 001733 650 TIVSVIK-ETEASYSLLEVINN----PH----DELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCPTETIHITE 720 (1019)
Q Consensus 650 ~i~~~i~-~~g~i~~Lv~LL~~----~~----~~vr~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~LV~lL~~~~~~~~ 720 (1019)
...+.+. --+.+...+.++.. ++ ++........| . +.+. -.++.|-+.-.++..+..
T Consensus 309 ~~~~~L~~cf~ilE~~I~~l~~~~~~~~~~~~~~~l~kl~~~l---~--------e~~~---~vle~L~~~~d~~~~d~~ 374 (543)
T PF05536_consen 309 EKQRLLASCFSILEHFIGYLVRSLEEESLDLDPDTLLKLRTSL---S--------ETFS---AVLEYLRDVWDESQKDPD 374 (543)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccCCCCHHHHHHHHHHH---H--------HHHH---HHHHHHHHhhhccccchH
Confidence 0000000 01112222222221 11 11111111111 1 0000 011122111112211222
Q ss_pred HHHHHHHHHhccCCCCh-hhHHHHHhCCChHHHHHHHHhhhccCCCccchhhhHHHHHHHHHHHHhcCCCchhHHHHHHh
Q 001733 721 KQAVSAKFLAKLPHQNL-TLNLALSARNVVPTILQTINLIQRSGTRTSRYASAYLEGLIGILVRFTTTLYEPQILFLART 799 (1019)
Q Consensus 721 ~~~~A~~~L~nL~~~~~-~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~lt~~~~~~~~~~~~~~ 799 (1019)
...+++++|+.--..++ .+++.+ .|.+|.++.+.++...+................=+|++++. +++-++.+..
T Consensus 375 ~vlAsvR~L~~WLaEe~~~lr~~v--~~Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~---e~~gr~~l~~ 449 (543)
T PF05536_consen 375 FVLASVRVLGAWLAEETSALRKEV--YGLLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTA---EEEGRKILLS 449 (543)
T ss_pred HHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhhc---cHHHHHHHHh
Confidence 55667888877544343 344444 48899999998754322111000133455666778888886 8999999999
Q ss_pred CCchHHHHHHHh
Q 001733 800 HNFTSVFTELLM 811 (1019)
Q Consensus 800 ~g~i~~Lv~LL~ 811 (1019)
+|+...|++.|-
T Consensus 450 ~~g~~~l~~~l~ 461 (543)
T PF05536_consen 450 NGGWKLLCDDLL 461 (543)
T ss_pred CCcHHHHHHHHH
Confidence 999888876553
No 57
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.45 E-value=4.2e-05 Score=87.81 Aligned_cols=242 Identities=15% Similarity=0.058 Sum_probs=173.6
Q ss_pred cCChHHHHHHhh-cCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHhcCCChhHHHHHHHHHHHhccChhhhh
Q 001733 349 VGVLPLLTKLLE-YKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSSHRPVRHESLLLLLELSSTRSLCE 427 (1019)
Q Consensus 349 ~g~i~~Lv~lL~-s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~~~~~~ 427 (1019)
..+++.|+..|. ..+.+++..++.+|... .+ ..++..++..|.+.+..++..++..|..+
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~--~~---------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i-------- 113 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLAQ--ED---------ALDLRSVLAVLQAGPEGLCAGIQAALGWL-------- 113 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhcc--CC---------hHHHHHHHHHhcCCCHHHHHHHHHHHhcC--------
Confidence 346888999995 55677766655555322 11 12389999999999888999999998764
Q ss_pred hhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC
Q 001733 428 KIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLG 507 (1019)
Q Consensus 428 ~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~ 507 (1019)
...++.+.|+.+|. +.++.++..++.++.. ......++|..+|.+.++.++..++.+|..+..
T Consensus 114 ---~~~~a~~~L~~~L~--~~~p~vR~aal~al~~-----------r~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~- 176 (410)
T TIGR02270 114 ---GGRQAEPWLEPLLA--ASEPPGRAIGLAALGA-----------HRHDPGPALEAALTHEDALVRAAALRALGELPR- 176 (410)
T ss_pred ---CchHHHHHHHHHhc--CCChHHHHHHHHHHHh-----------hccChHHHHHHHhcCCCHHHHHHHHHHHHhhcc-
Confidence 23778899999994 6688888877776664 122356799999999999999999999996643
Q ss_pred cccccccccchHHHHHHHHhcCChHHHHHHHHHHHHhhcCCcchHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHH
Q 001733 508 HDSKINVPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAIL 587 (1019)
Q Consensus 508 ~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L 587 (1019)
...++.|...+.+.++.++..|+.+|..+... +++.++..+....+ .-+..++.++
T Consensus 177 --------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~~----------~A~~~l~~~~~~~g------~~~~~~l~~~ 232 (410)
T TIGR02270 177 --------RLSESTLRLYLRDSDPEVRFAALEAGLLAGSR----------LAWGVCRRFQVLEG------GPHRQRLLVL 232 (410)
T ss_pred --------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCCH----------hHHHHHHHHHhccC------ccHHHHHHHH
Confidence 24688899999999999999999999777542 34556666444333 1122232223
Q ss_pred HHHHhcCCCcccccccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHh
Q 001733 588 ANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEV 667 (1019)
Q Consensus 588 ~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~L 667 (1019)
..+.. ....+..|..+++. +.++..++.+|..+.. ...++.|+..
T Consensus 233 lal~~------------------~~~a~~~L~~ll~d---~~vr~~a~~AlG~lg~--------------p~av~~L~~~ 277 (410)
T TIGR02270 233 LAVAG------------------GPDAQAWLRELLQA---AATRREALRAVGLVGD--------------VEAAPWCLEA 277 (410)
T ss_pred HHhCC------------------chhHHHHHHHHhcC---hhhHHHHHHHHHHcCC--------------cchHHHHHHH
Confidence 32221 13578888999876 4488888888876643 3567788888
Q ss_pred hcCCCHHHHHHHHHHHHHhC
Q 001733 668 INNPHDELAVAAIKLLTTLS 687 (1019)
Q Consensus 668 L~~~~~~vr~~A~~~L~~Ls 687 (1019)
+..+. +++.|..++..++
T Consensus 278 l~d~~--~aR~A~eA~~~It 295 (410)
T TIGR02270 278 MREPP--WARLAGEAFSLIT 295 (410)
T ss_pred hcCcH--HHHHHHHHHHHhh
Confidence 86543 9999999999998
No 58
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.44 E-value=1.3e-07 Score=70.29 Aligned_cols=38 Identities=29% Similarity=0.703 Sum_probs=32.5
Q ss_pred cccCcccCCCc-eecCCCccccHHHHHHHHhhhccCCCCCCCCC
Q 001733 236 CPLTKEIMDDP-VTIESGVTYERNAITAWFEKFETSGDIFCPTT 278 (1019)
Q Consensus 236 Cpi~~~~m~dP-v~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~ 278 (1019)
||||.+.++|| ++++|||+|++.||++|++. ...||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-----~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-----NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-----TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-----cCCCcCC
Confidence 89999999999 57899999999999999987 3679986
No 59
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=0.0011 Score=79.52 Aligned_cols=352 Identities=16% Similarity=0.113 Sum_probs=212.1
Q ss_pred HHHHHHHhhcc-CChhHHHHHHhcCCHHHHHHHhcCC-----------Ch--hHHHHHHHHHHHhccChhhhhhhhcccc
Q 001733 369 AAMELLRQLVV-EDDEGKEMIAETMDISILIKLLSSS-----------HR--PVRHESLLLLLELSSTRSLCEKIGSIPG 434 (1019)
Q Consensus 369 ~Al~~L~~La~-~~~~~k~~I~~~g~i~~Lv~lL~~~-----------~~--~~r~~Aa~~L~~Ls~~~~~~~~i~~~~g 434 (1019)
-|+.-|.++.. .+.-|-+.+...|+++.|...++.. ++ .+-.+...++.-.+..++.++.+..-+.
T Consensus 1403 ~AA~ELa~~T~~~SaLNaEELrRdnGle~L~tafSRCv~Vvt~~s~p~dmav~vc~~v~~c~SVaaQFE~cR~~~~EmPS 1482 (2235)
T KOG1789|consen 1403 SAAIELANYTLISSALNAEELRRDNGLEALVTAFSRCVPVVTMSSLPDDMAVRVCIHVCDCFSVAAQFEACRQRLMEMPS 1482 (2235)
T ss_pred HHHHHHHHHHHhhhhcCHHHHhhcccHHHHHHHHhhhheeeccccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 34444554432 3345677888899999999888642 22 2334555666666777888998888888
Q ss_pred hHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHHHhcCChHHHHHHhcc--------C---CH---------HHH
Q 001733 435 GILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNE--------G---SE---------EIQ 494 (1019)
Q Consensus 435 ~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~lL~~--------~---~~---------~~~ 494 (1019)
.|.-|++++.- +.-|.+...|+.++...+.+..-+..+.++|++=-|+.+|-. + ++ +..
T Consensus 1483 iI~Dl~r~l~f-~~vPr~~~aa~qci~~~aVd~~LQ~~LfqAG~LWYlLp~Lf~YDyTlEESg~q~Se~~n~Q~~aNslA 1561 (2235)
T KOG1789|consen 1483 IIGDLTRLLQF-SNLPRLSTAAAQCIRAMAVDTLLQFQLFQAGVLWYLLPHLFHYDYTLEESGVQHSEDSNKQSLANSLA 1561 (2235)
T ss_pred HHHHHHHHHHh-ccccHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHHHHhcccccccccCccccccchHHHHHHHHH
Confidence 99999999863 336788888999999999888888899999998777777642 1 11 122
Q ss_pred HHHHHHHHHhccC-------ccccccc--ccch-HHHHHHHHhcC--------------ChHH------HHHHHHHH---
Q 001733 495 MEMASYLGEIVLG-------HDSKINV--PGRA-ASTLIRMVHSG--------------NSLT------RRIAFKAL--- 541 (1019)
Q Consensus 495 ~~aa~~L~~La~~-------~~~~~~i--~~~~-i~~Lv~lL~~~--------------~~~~------~~~A~~aL--- 541 (1019)
..+..+|..|+.. |+|-..- .++. .|.+.+.|+.. +|.+ +..-+..+
T Consensus 1562 ~~s~~ALSRL~G~~AdE~~TP~N~T~~~sL~alLTPyiAr~Lk~e~~~~iLk~LNsN~E~Py~IWNn~TRaELLeFve~Q 1641 (2235)
T KOG1789|consen 1562 RSSCEALSRLAGFRADEENTPDNDTVQASLRALLTPYIARCLKLETNDMVLKTLNSNMENPYMIWNNGTRAELLEFVERQ 1641 (2235)
T ss_pred HHHHHHHHHHhccccccccCCCChhHHHHHHHhccHHHHHHHHHHHHHHHHHHhhcCCCCceeeecCccHHHHHHHHHHH
Confidence 2344566666541 2222111 1111 23333333221 1111 11111110
Q ss_pred -HHhhcCCcc--------------hHHHHH------------------cCcHHHHHHHHhhh------------------
Q 001733 542 -MQISSHHPS--------------CKILVE------------------AGIVQVMAEEMFIR------------------ 570 (1019)
Q Consensus 542 -~~Ls~~~~~--------------~~~l~~------------------~G~v~~Lv~lL~~~------------------ 570 (1019)
.+.+.+.+. +..++. ...-..|++.+.+.
T Consensus 1642 racq~~~G~~D~~yg~eF~Ys~h~KEliVG~ifirVYNeqPtf~l~ePk~Fa~~LlDyI~S~~~~l~~~~~~~~~s~d~i 1721 (2235)
T KOG1789|consen 1642 RACQTSNGPTDELYGAEFEYSVHKKELIVGDIFIRVYNEQPTFALHEPKKFAIDLLDYIKSHSAELTGAPKPKAISDDLI 1721 (2235)
T ss_pred HhccCCCCCchhhccceeeehhhccceeeeeEEEEeecCCCchhhcCcHHHHHHHHHHHHHhHHHhcCCCCccccccchh
Confidence 011111110 000000 00011233333211
Q ss_pred ----------ccCCCChh-HHHHHHHHHHHHHhcCCCcccccccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHHHHH
Q 001733 571 ----------IIHNEPMN-SKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQ 639 (1019)
Q Consensus 571 ----------~~~~~~~~-~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~ 639 (1019)
+.|..|.+ -.+.+..+|.|+....++...+ -|....--+..+-+..+|...+++.++.-|+.++.
T Consensus 1722 e~~~~V~sE~HgD~lPs~~~v~m~LtAL~Nli~~nPdlasv----fgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~ 1797 (2235)
T KOG1789|consen 1722 EIDWGVGSEAHGDSLPTETKVLMTLTALANLVSANPDLASV----FGSEILLIGNFPLLITYLRCRKHPKLQILALQVIL 1797 (2235)
T ss_pred hhhcccchhhhcCCCChHHHHHHHHHHHHHHHhhCcchhhh----ccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHH
Confidence 01122322 2367778888888766544322 12222222445566666766588999999999999
Q ss_pred HHhCCCCchHHHHHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHhCcCCChhHHHHhhhcCCChhHhhcccCCCCcCh
Q 001733 640 CLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCPTETIHIT 719 (1019)
Q Consensus 640 ~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~~vr~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~LV~lL~~~~~~~ 719 (1019)
.++...+. ++-|.+.|.+..|+.+|+ +-+..|..++..|+.|+.. ++...+.+. .|++..+..++..+. ..
T Consensus 1798 ~~Tan~~C----v~~~a~~~vL~~LL~lLH-S~PS~R~~vL~vLYAL~S~-~~i~keA~~--hg~l~yil~~~c~~~-~~ 1868 (2235)
T KOG1789|consen 1798 LATANKEC----VTDLATCNVLTTLLTLLH-SQPSMRARVLDVLYALSSN-GQIGKEALE--HGGLMYILSILCLTN-SD 1868 (2235)
T ss_pred HHhcccHH----HHHHHhhhHHHHHHHHHh-cChHHHHHHHHHHHHHhcC-cHHHHHHHh--cCchhhhhHHHhccC-cH
Confidence 99886654 566777888888888885 4477899999999999853 445555555 589999999888777 57
Q ss_pred HHHHHHHHHHhccCC
Q 001733 720 EKQAVSAKFLAKLPH 734 (1019)
Q Consensus 720 ~~~~~A~~~L~nL~~ 734 (1019)
.+++.|+.+++.+..
T Consensus 1869 QqRAqaAeLlaKl~A 1883 (2235)
T KOG1789|consen 1869 QQRAQAAELLAKLQA 1883 (2235)
T ss_pred HHHHHHHHHHHHhhh
Confidence 899999999999865
No 60
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=2.2e-05 Score=90.06 Aligned_cols=423 Identities=16% Similarity=0.118 Sum_probs=238.2
Q ss_pred CCHHHHHHHhc---CCChhHHHHHHHHHHHhccChhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcC--C
Q 001733 392 MDISILIKLLS---SSHRPVRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLER--N 466 (1019)
Q Consensus 392 g~i~~Lv~lL~---~~~~~~r~~Aa~~L~~Ls~~~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~--~ 466 (1019)
.++..+..+|+ +.++++|.++...|.++-..++....+.- .|+++ .+++...+..|--.|.|=.. +
T Consensus 10 ~~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~pdfnnYL~~------IL~~~---~~~d~~~Rs~aGLlLKNnvr~~~ 80 (885)
T KOG2023|consen 10 QGLQQLAQLLKNSQSPNSETRNNVQEKLEQFNLFPDFNNYLIY------ILIRA---KSEDVPTRSLAGLLLKNNVRGHY 80 (885)
T ss_pred HHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcccchhceeeE------EEecc---cccchhHHHHhhhhHhccccccc
Confidence 45667777776 46778999999998888766654443211 12222 23444444444444444321 1
Q ss_pred CCchHHHHhcCChHH-HHHHhccCCHHHHHHHHH-HHHHhccCccccccccc--chHHHHHHHHhcCChHHHHHHHHHHH
Q 001733 467 PDNIKCMAENGLLEP-LMHHLNEGSEEIQMEMAS-YLGEIVLGHDSKINVPG--RAASTLIRMVHSGNSLTRRIAFKALM 542 (1019)
Q Consensus 467 ~~n~~~i~~~G~i~~-Lv~lL~~~~~~~~~~aa~-~L~~La~~~~~~~~i~~--~~i~~Lv~lL~~~~~~~~~~A~~aL~ 542 (1019)
...... ..++|.. .++-+.+.++ ......+ ++..+++ +..+-. .++|.|.++|.+.+....|-|.+||.
T Consensus 81 ~~~~~~--~~~yiKs~~l~~lgd~~~-lIr~tvGivITTI~s----~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~ 153 (885)
T KOG2023|consen 81 NSIPSE--VLDYIKSECLHGLGDASP-LIRATVGIVITTIAS----TGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQ 153 (885)
T ss_pred cCCChH--HHHHHHHHHHhhccCchH-HHHhhhhheeeeeec----ccccccchhHHHHHHHHhcCCcccccchhHHHHH
Confidence 111111 1122221 3333443333 2222222 2222222 222212 37899999999988899999999999
Q ss_pred HhhcCCcch---HHHHH--cCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCcccccccccCcccchhhhHHH
Q 001733 543 QISSHHPSC---KILVE--AGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYN 617 (1019)
Q Consensus 543 ~Ls~~~~~~---~~l~~--~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~ 617 (1019)
.+|.+.... +..-+ .-.+|.++++.++++ ..++..|..++-.+.-..... --..-..++..
T Consensus 154 KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~s-----pkiRs~A~~cvNq~i~~~~qa---------l~~~iD~Fle~ 219 (885)
T KOG2023|consen 154 KICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPS-----PKIRSHAVGCVNQFIIIQTQA---------LYVHIDKFLEI 219 (885)
T ss_pred HHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCC-----hhHHHHHHhhhhheeecCcHH---------HHHHHHHHHHH
Confidence 999876531 11101 224777888766542 477777776554332211100 01123456777
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHhCcCC-Chh-HH
Q 001733 618 IIYMLKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTLSPYL-GHT-LV 695 (1019)
Q Consensus 618 Ll~LL~~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~~vr~~A~~~L~~Ls~~~-~~~-~~ 695 (1019)
+..+-+. .+|.+|.+.+++|..|..-.. +.+...+ .+.++.++..-++.++++-..|+.....++... ..+ ..
T Consensus 220 lFalanD-~~~eVRk~vC~alv~Llevr~--dkl~phl--~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~ 294 (885)
T KOG2023|consen 220 LFALAND-EDPEVRKNVCRALVFLLEVRP--DKLVPHL--DNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQ 294 (885)
T ss_pred HHHHccC-CCHHHHHHHHHHHHHHHHhcH--Hhcccch--HHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHH
Confidence 7777766 999999999999998865322 1111111 134445555667788899999999888888432 222 22
Q ss_pred HHhhhcCCChhHhhcccCCCCc------------------------------------------------------ChHH
Q 001733 696 ERLCKTRGQPENLIQCPTETIH------------------------------------------------------ITEK 721 (1019)
Q Consensus 696 ~~l~~~~g~i~~LV~lL~~~~~------------------------------------------------------~~~~ 721 (1019)
..+. ..+|.|++-+..++. +...
T Consensus 295 p~l~---kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNL 371 (885)
T KOG2023|consen 295 PYLD---KLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNL 371 (885)
T ss_pred HHHH---HHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccH
Confidence 2222 455555543332220 0122
Q ss_pred HH---HHHHHHhccCCCChhhHHHHHhCCChHHHHHHHHhhhccCCCccchhhhHHHHHHHHHHHHhcCCCchhHHHHHH
Q 001733 722 QA---VSAKFLAKLPHQNLTLNLALSARNVVPTILQTINLIQRSGTRTSRYASAYLEGLIGILVRFTTTLYEPQILFLAR 798 (1019)
Q Consensus 722 ~~---~A~~~L~nL~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~lt~~~~~~~~~~~~~ 798 (1019)
|. +|+.+|+|+- ....++.+.-+|++.-.. ..-.++|..+-+|..++.+ ..+.+.
T Consensus 372 RkCSAAaLDVLanvf-----------~~elL~~l~PlLk~~L~~------~~W~vrEagvLAlGAIAEG-----cM~g~~ 429 (885)
T KOG2023|consen 372 RKCSAAALDVLANVF-----------GDELLPILLPLLKEHLSS------EEWKVREAGVLALGAIAEG-----CMQGFV 429 (885)
T ss_pred hhccHHHHHHHHHhh-----------HHHHHHHHHHHHHHHcCc------chhhhhhhhHHHHHHHHHH-----Hhhhcc
Confidence 32 3334444442 334566777777642211 2333555555555555532 122222
Q ss_pred hC--CchHHHHHHHhcCCcHHHHHHHHHHHhhhcccCCcCCCCCCcCCcccccccccCcccccCCCCCCCCCCCcccCCc
Q 001733 799 TH--NFTSVFTELLMKTSCDEVQKLAAIGLENLSSESINLSKPPQIKSKKFMKFFSLPKSLSVGSSKKKSVSLCPVHRGA 876 (1019)
Q Consensus 799 ~~--g~i~~Lv~LL~~~~~~~vk~~AA~aL~nLs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~v~~~~ 876 (1019)
.+ .+||.|+++|.+ ..+.||.-.+|+|..++.......
T Consensus 430 p~LpeLip~l~~~L~D-KkplVRsITCWTLsRys~wv~~~~--------------------------------------- 469 (885)
T KOG2023|consen 430 PHLPELIPFLLSLLDD-KKPLVRSITCWTLSRYSKWVVQDS--------------------------------------- 469 (885)
T ss_pred cchHHHHHHHHHHhcc-CccceeeeeeeeHhhhhhhHhcCC---------------------------------------
Confidence 22 378999999999 899999999999987764331100
Q ss_pred cccCccchhhhccchHHHHhhhccCchhhHHHHHHHHHhhhccC
Q 001733 877 CSSQNTFCLIDAKAVDRLLACLYHENVEVVEAALSALCTLLDEK 920 (1019)
Q Consensus 877 cs~~~~~~Lv~~gai~~Lv~lL~~~d~~v~~~Al~AL~~L~~d~ 920 (1019)
.+.| + ...+.+|++.+-+.+.+|+|+|+.|..++-.+.
T Consensus 470 ---~~~~-f--~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A 507 (885)
T KOG2023|consen 470 ---RDEY-F--KPVLEGLLRRLLDSNKKVQEAACSAFATLEEEA 507 (885)
T ss_pred ---hHhh-h--HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhc
Confidence 0000 0 124677788888999999999999999988553
No 61
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.41 E-value=1.4e-07 Score=70.78 Aligned_cols=39 Identities=23% Similarity=0.632 Sum_probs=24.0
Q ss_pred cccCcccCCC----ceecCCCccccHHHHHHHHhhhccCCCCCCC
Q 001733 236 CPLTKEIMDD----PVTIESGVTYERNAITAWFEKFETSGDIFCP 276 (1019)
Q Consensus 236 Cpi~~~~m~d----Pv~~~~g~t~~r~~I~~~~~~~~~~~~~~cP 276 (1019)
||||.+ |.+ |++++|||+||+.||++|+.... ++...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~-~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSD-RNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S--S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCC-CCeeeCc
Confidence 999999 999 99999999999999999999721 1244576
No 62
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=0.00012 Score=77.56 Aligned_cols=311 Identities=16% Similarity=0.150 Sum_probs=207.9
Q ss_pred HHHHHHHHHHhcccccc----hHHHhcCChHHHHHHhhcCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHH--HHH
Q 001733 327 EAIKDLQTVCQRKQYNK----VQVRNVGVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISIL--IKL 400 (1019)
Q Consensus 327 ~Al~~L~~l~~~~~~~r----~~i~~~g~i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~L--v~l 400 (1019)
-++..+..+.++.+.|- ..+.++|..|.++......|.++-..|...+..++ ..+..-+.|.+....+.+ +.+
T Consensus 101 LackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikria-lfpaaleaiFeSellDdlhlrnl 179 (524)
T KOG4413|consen 101 LACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIA-LFPAALEAIFESELLDDLHLRNL 179 (524)
T ss_pred hhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHH-hcHHHHHHhcccccCChHHHhHH
Confidence 34444444445544432 23568899999999999999999999999999998 677777777766655544 233
Q ss_pred hcCCChhHHHHHHHHHHHhcc-ChhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHHHhcCCh
Q 001733 401 LSSSHRPVRHESLLLLLELSS-TRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLL 479 (1019)
Q Consensus 401 L~~~~~~~r~~Aa~~L~~Ls~-~~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~i 479 (1019)
--..+.-+|.....++.+++. +++..... ...|.+..|..=|. +.+|.-+.-++......|+.....+..+.+.|.|
T Consensus 180 aakcndiaRvRVleLIieifSiSpesanec-kkSGLldlLeaElk-GteDtLVianciElvteLaeteHgreflaQeglI 257 (524)
T KOG4413|consen 180 AAKCNDIARVRVLELIIEIFSISPESANEC-KKSGLLDLLEAELK-GTEDTLVIANCIELVTELAETEHGREFLAQEGLI 257 (524)
T ss_pred HhhhhhHHHHHHHHHHHHHHhcCHHHHhHh-hhhhHHHHHHHHhc-CCcceeehhhHHHHHHHHHHHhhhhhhcchhhHH
Confidence 333445567777777777755 44444443 34777777766665 5678888889999999999888889999999999
Q ss_pred HHHHHHhcc--CCHHHHHHHHH----HHHHhccCcccccccccc---hHHHHHHHHhcCChHHHHHHHHHHHHhhcCCcc
Q 001733 480 EPLMHHLNE--GSEEIQMEMAS----YLGEIVLGHDSKINVPGR---AASTLIRMVHSGNSLTRRIAFKALMQISSHHPS 550 (1019)
Q Consensus 480 ~~Lv~lL~~--~~~~~~~~aa~----~L~~La~~~~~~~~i~~~---~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~ 550 (1019)
+.+...+.. .+|--+..++. .+.+.+..+-.-+.+.+. ++..-.+++...++...+.|+.+|..|.++.+.
T Consensus 258 dlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteG 337 (524)
T KOG4413|consen 258 DLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEG 337 (524)
T ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcch
Confidence 999998863 23333333333 444444433333344332 356667888888999999999999999999988
Q ss_pred hHHHHHcCc--HHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCcccccccccCcccch--------------hhh
Q 001733 551 CKILVEAGI--VQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVS--------------DYV 614 (1019)
Q Consensus 551 ~~~l~~~G~--v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~--------------~~~ 614 (1019)
.+.+.+.|- .+.++.-.+..+. ..-++.+..+|.+++....-+.+-++| |+...+ -.-
T Consensus 338 adlllkTgppaaehllarafdqna----hakqeaaihaLaaIagelrlkpeqitD--gkaeerlrclifdaaaqstkldP 411 (524)
T KOG4413|consen 338 ADLLLKTGPPAAEHLLARAFDQNA----HAKQEAAIHALAAIAGELRLKPEQITD--GKAEERLRCLIFDAAAQSTKLDP 411 (524)
T ss_pred hHHHhccCChHHHHHHHHHhcccc----cchHHHHHHHHHHhhccccCChhhccc--cHHHHHHHHHHHHHHhhccCCCh
Confidence 888888774 4455443443322 244577777788887643322222222 211100 022
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCc
Q 001733 615 VYNIIYMLKNSTPDELNVHLIRILQCLTKSPKP 647 (1019)
Q Consensus 615 i~~Ll~LL~~~~~~~v~~~a~~aL~~La~~~~~ 647 (1019)
...++..++. +.|+++..+.+++..++..|..
T Consensus 412 leLFlgilqQ-pfpEihcAalktfTAiaaqPWa 443 (524)
T KOG4413|consen 412 LELFLGILQQ-PFPEIHCAALKTFTAIAAQPWA 443 (524)
T ss_pred HHHHHHHHcC-CChhhHHHHHHHHHHHHcCcHH
Confidence 3455666776 8899999999999999987764
No 63
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=1.5e-05 Score=86.65 Aligned_cols=187 Identities=16% Similarity=0.090 Sum_probs=150.4
Q ss_pred hcCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHhcCCChhHHHHHHHHHHHhccCh-hhhhhhhcccchHHH
Q 001733 360 EYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSSHRPVRHESLLLLLELSSTR-SLCEKIGSIPGGILV 438 (1019)
Q Consensus 360 ~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~~-~~~~~i~~~~g~I~~ 438 (1019)
.+.+.+.++.|+.-|..++ ++-+|-..+...|++..++.+|.+++.++|+.|+.+|...+.+. ...+.+. ..|+.+.
T Consensus 93 ~s~~le~ke~ald~Le~lv-e~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~-E~~~L~~ 170 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELV-EDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVI-ELGALSK 170 (342)
T ss_pred ccCCHHHHHHHHHHHHHHH-HhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHH-HcccHHH
Confidence 4568999999999999998 78888888999999999999999999999999999999999865 5555554 4899999
Q ss_pred HHHhhhcCCCChHHHHHHHHHHHHhcC-CCCchHHHHhcCChHHHHHHhcc--CCHHHHHHHHHHHHHhccCcccccccc
Q 001733 439 LITFKFNWSIDVFAAEIADQILRNLER-NPDNIKCMAENGLLEPLMHHLNE--GSEEIQMEMASYLGEIVLGHDSKINVP 515 (1019)
Q Consensus 439 LV~lL~~~~~~~~~~~~A~~aL~nLs~-~~~n~~~i~~~G~i~~Lv~lL~~--~~~~~~~~aa~~L~~La~~~~~~~~i~ 515 (1019)
|+.++. .+++..++..|+.|+.+|-. ++.....+...++...|...|.+ .+...+.-++..+..|.........+.
T Consensus 171 Ll~~ls-~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~ 249 (342)
T KOG2160|consen 171 LLKILS-SDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIA 249 (342)
T ss_pred HHHHHc-cCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 999997 45556677999999999985 45577888888899999999998 456778889999999887443333354
Q ss_pred cc-h-HHHHHHHHhcCChHHHHHHHHHHHHhhcCCc
Q 001733 516 GR-A-ASTLIRMVHSGNSLTRRIAFKALMQISSHHP 549 (1019)
Q Consensus 516 ~~-~-i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~ 549 (1019)
.. + -..++.+..+.+..+.+.++.++..+.....
T Consensus 250 ~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~ 285 (342)
T KOG2160|consen 250 SSLGFQRVLENLISSLDFEVNEAALTALLSLLSELS 285 (342)
T ss_pred HHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHh
Confidence 42 4 4555667777788899999998887765443
No 64
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.31 E-value=0.00018 Score=79.47 Aligned_cols=326 Identities=11% Similarity=0.088 Sum_probs=217.8
Q ss_pred ChHHHHHHhhcC-CHHHHHHHHHHHHhhccCChhHHHHHHh-------cCCHHHHHHHhcCCChhHHHHHHHHHHHhccC
Q 001733 351 VLPLLTKLLEYK-DRNVRCAAMELLRQLVVEDDEGKEMIAE-------TMDISILIKLLSSSHRPVRHESLLLLLELSST 422 (1019)
Q Consensus 351 ~i~~Lv~lL~s~-~~~~~~~Al~~L~~La~~~~~~k~~I~~-------~g~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~ 422 (1019)
.+.+++.+++.. .++...-++..+..+- ..+..|..+.. .-.-+..+.+|..++.-+.+.+..+|..++..
T Consensus 66 ~v~~fi~LlS~~~kdd~v~yvL~li~DmL-s~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~ 144 (442)
T KOG2759|consen 66 YVKTFINLLSHIDKDDTVQYVLTLIDDML-SEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACF 144 (442)
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHH-hhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHh
Confidence 467788888764 4556666676666654 23333443321 12367788999999988888888888888764
Q ss_pred hhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHHHhcCChHHHHHHhc--cCCHHHHHHHHHH
Q 001733 423 RSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLN--EGSEEIQMEMASY 500 (1019)
Q Consensus 423 ~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~lL~--~~~~~~~~~aa~~ 500 (1019)
...+...+...=....|-.++. .+.+++...-|+.+|..+...++.|..++.+.++..|+..|. ..+-.++.....+
T Consensus 145 g~~~~~~~e~~~~~~~l~~~l~-~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifc 223 (442)
T KOG2759|consen 145 GNCKMELSELDVYKGFLKEQLQ-SSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFC 223 (442)
T ss_pred ccccccchHHHHHHHHHHHHHh-ccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHH
Confidence 4322211110112223334444 356778888999999999999999999999999999999994 3467889999999
Q ss_pred HHHhccCccccccccc-chHHHHHHHHhcCC-hHHHHHHHHHHHHhhcCCcc-------hHHHHHcCcHHHHHHHHhhhc
Q 001733 501 LGEIVLGHDSKINVPG-RAASTLIRMVHSGN-SLTRRIAFKALMQISSHHPS-------CKILVEAGIVQVMAEEMFIRI 571 (1019)
Q Consensus 501 L~~La~~~~~~~~i~~-~~i~~Lv~lL~~~~-~~~~~~A~~aL~~Ls~~~~~-------~~~l~~~G~v~~Lv~lL~~~~ 571 (1019)
++.|.-++...+.+.. +.++.|++++++.. .++.+-++.++.|+...++. ...|+..++.+.+ +.|....
T Consensus 224 iWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l-~~L~~rk 302 (442)
T KOG2759|consen 224 IWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTL-QSLEERK 302 (442)
T ss_pred HHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHH-HHHHhcC
Confidence 9999999887777755 46999999998753 56888899999999987742 3455666665555 5555443
Q ss_pred cCCCChhHHHHHHHHHHH-------HHhc----------CCCcccccccccCcccch----------hhhHHHHHHHHcC
Q 001733 572 IHNEPMNSKEEAAAILAN-------ILES----------GLEHHSLQVNSHGHTMVS----------DYVVYNIIYMLKN 624 (1019)
Q Consensus 572 ~~~~~~~~~~~A~~~L~~-------L~~~----------~~~~~~~~v~~~g~~l~~----------~~~i~~Ll~LL~~ 624 (1019)
-+ +.++....--+-.. |++- .-.|- ++|+. .-++. -.++..|+++|..
T Consensus 303 ys--DEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WS--P~Hk~-e~FW~eNa~rlnennyellkiL~~lLe~ 377 (442)
T KOG2759|consen 303 YS--DEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWS--PVHKS-EKFWRENADRLNENNYELLKILIKLLET 377 (442)
T ss_pred CC--cHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCC--ccccc-cchHHHhHHHHhhccHHHHHHHHHHHhc
Confidence 22 12333222221111 1110 00010 01100 11222 2468899999998
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHhC
Q 001733 625 STPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTLS 687 (1019)
Q Consensus 625 ~~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~~vr~~A~~~L~~Ls 687 (1019)
+.+|.+-.-|+.=+....++-+. .+..+.+.||-..+..|+++++++||.+|+.++..|-
T Consensus 378 s~Dp~iL~VAc~DIge~Vr~yP~---gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 378 SNDPIILCVACHDIGEYVRHYPE---GKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLM 437 (442)
T ss_pred CCCCceeehhhhhHHHHHHhCch---HhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 66687777777777777665533 3557778899999999999999999999998876553
No 65
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.30 E-value=5.5e-07 Score=67.86 Aligned_cols=40 Identities=35% Similarity=0.884 Sum_probs=36.3
Q ss_pred cccCcccCCCce-ecCCCccccHHHHHHHHhhhccCCCCCCCCC
Q 001733 236 CPLTKEIMDDPV-TIESGVTYERNAITAWFEKFETSGDIFCPTT 278 (1019)
Q Consensus 236 Cpi~~~~m~dPv-~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~ 278 (1019)
||||.+.+.+|+ +++|||+|++.||.+|++. .+...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~---~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLEN---SGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHH---TSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHh---cCCccCCcC
Confidence 899999999999 8899999999999999995 156789986
No 66
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.30 E-value=2.9e-07 Score=96.55 Aligned_cols=69 Identities=17% Similarity=0.257 Sum_probs=62.8
Q ss_pred CCCccccccCcccCCCceecCCCccccHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCccCHhHHHHHHHHHHH
Q 001733 230 LYETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVALKTTIEEWKDR 303 (1019)
Q Consensus 230 ~~~~~~Cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~~~~l~pn~~Lr~~I~~w~~~ 303 (1019)
+-+-+.|-||.++|+-||++|||||||--||.+++.. ++.||.|..+++...|+.|.-|..+|+.+...
T Consensus 20 lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~-----~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~~ 88 (442)
T KOG0287|consen 20 LDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY-----KPQCPTCCVTVTESDLRNNRILDEIVKSLNFA 88 (442)
T ss_pred hHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc-----CCCCCceecccchhhhhhhhHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999987 67899999999999999999999999887543
No 67
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.29 E-value=0.0039 Score=74.86 Aligned_cols=513 Identities=14% Similarity=0.138 Sum_probs=271.4
Q ss_pred cCCHHHHHHHHHHHHHHHhcccccchHHHhcCChHHHHHHhhcCCHHHHHHHHHHHHhhccC----Ch----hHHHHHHh
Q 001733 319 AGSDRMVLEAIKDLQTVCQRKQYNKVQVRNVGVLPLLTKLLEYKDRNVRCAAMELLRQLVVE----DD----EGKEMIAE 390 (1019)
Q Consensus 319 ~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~Al~~L~~La~~----~~----~~k~~I~~ 390 (1019)
+++......++..|......++..+..=...-..|+++.....+-.++-.+|+.+...+.+- .+ +....+
T Consensus 489 Ssss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v-- 566 (1233)
T KOG1824|consen 489 SSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYV-- 566 (1233)
T ss_pred cchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhH--
Confidence 45566777888888776555443321111112334444444455566777777766666520 00 000000
Q ss_pred cCCHHHHHHHhcC--CChhHHHHHHHHHHHhccC--hhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCC
Q 001733 391 TMDISILIKLLSS--SHRPVRHESLLLLLELSST--RSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERN 466 (1019)
Q Consensus 391 ~g~i~~Lv~lL~~--~~~~~r~~Aa~~L~~Ls~~--~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~ 466 (1019)
...+......|.. .|.++|+.|+.++..+-.. +-.+.. .+.+++.+++-|+ +.-.+-.|+.||..++..
T Consensus 567 ~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~e---L~~~L~il~eRl~----nEiTRl~AvkAlt~Ia~S 639 (1233)
T KOG1824|consen 567 KTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNE---LPRTLPILLERLG----NEITRLTAVKALTLIAMS 639 (1233)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhh---hHHHHHHHHHHHh----chhHHHHHHHHHHHHHhc
Confidence 0123344455554 4568999999998877442 212221 2567788888774 334577788888877655
Q ss_pred CCch--HHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCcc--cccccccchHHHHHHHHhcCChHHHHHHHHHHH
Q 001733 467 PDNI--KCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHD--SKINVPGRAASTLIRMVHSGNSLTRRIAFKALM 542 (1019)
Q Consensus 467 ~~n~--~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~--~~~~i~~~~i~~Lv~lL~~~~~~~~~~A~~aL~ 542 (1019)
+-.. ..+. ..+++.|...++......+.....++..|..+.. ......+..+.-+-.++...+..+.+.|+..|.
T Consensus 640 ~l~i~l~~~l-~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~ 718 (1233)
T KOG1824|consen 640 PLDIDLSPVL-TEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLT 718 (1233)
T ss_pred cceeehhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 4322 2222 2468889999987777788888888888776432 222223334455556666667778999999999
Q ss_pred HhhcCCcchHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHH----HhcCCCcccccccccCcccchhhhHHHH
Q 001733 543 QISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANI----LESGLEHHSLQVNSHGHTMVSDYVVYNI 618 (1019)
Q Consensus 543 ~Ls~~~~~~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L----~~~~~~~~~~~v~~~g~~l~~~~~i~~L 618 (1019)
.+....+.....+..-+++.++.+++++ -++-.|..++.++ ...... .-+ ...+
T Consensus 719 tl~~~~ps~l~~~~~~iL~~ii~ll~Sp-------llqg~al~~~l~~f~alV~t~~~--------------~l~-y~~l 776 (1233)
T KOG1824|consen 719 TLAIIQPSSLLKISNPILDEIIRLLRSP-------LLQGGALSALLLFFQALVITKEP--------------DLD-YISL 776 (1233)
T ss_pred HHHhcccHHHHHHhhhhHHHHHHHhhCc-------cccchHHHHHHHHHHHHHhcCCC--------------Ccc-HHHH
Confidence 9998888766667778899999999875 3333444444333 222111 112 5667
Q ss_pred HHHHcCCCCHH-----H-------HHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHH-HhhcC-CCHHHHHHHHHHHH
Q 001733 619 IYMLKNSTPDE-----L-------NVHLIRILQCLTKSPKPMATIVSVIKETEASYSLL-EVINN-PHDELAVAAIKLLT 684 (1019)
Q Consensus 619 l~LL~~~~~~~-----v-------~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv-~LL~~-~~~~vr~~A~~~L~ 684 (1019)
+.++.. +-.. + -..++.+|...|..... .....|+ ++... .+..++.-|.-.|+
T Consensus 777 ~s~lt~-PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~-----------s~a~kl~~~~~s~~s~~~ikvfa~LslG 844 (1233)
T KOG1824|consen 777 LSLLTA-PVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSK-----------SLATKLIQDLQSPKSSDSIKVFALLSLG 844 (1233)
T ss_pred HHHHcC-CcccccccchhHHHHHHHHHHHHHHHHhccccch-----------hHHHHHHHHHhCCCCchhHHHHHHhhhh
Confidence 777765 2111 1 11223333333331111 1122333 44443 23568888887788
Q ss_pred HhCcCCChhHHHHhhhcCCChhHhhcccCCCCcChHHHHHHHHHHhccCCCChhhHHHHHhCCChHHHHHHHHhhhccCC
Q 001733 685 TLSPYLGHTLVERLCKTRGQPENLIQCPTETIHITEKQAVSAKFLAKLPHQNLTLNLALSARNVVPTILQTINLIQRSGT 764 (1019)
Q Consensus 685 ~Ls~~~~~~~~~~l~~~~g~i~~LV~lL~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~ 764 (1019)
-+.++.+..-.. +.-..++.-+.++. ++++.+|..+|+++..|+-+ ..+|.|+..+.. ..
T Consensus 845 Elgr~~~~s~~~------e~~~~iieaf~sp~--edvksAAs~ALGsl~vgnl~--------~yLpfil~qi~s---qp- 904 (1233)
T KOG1824|consen 845 ELGRRKDLSPQN------ELKDTIIEAFNSPS--EDVKSAASYALGSLAVGNLP--------KYLPFILEQIES---QP- 904 (1233)
T ss_pred hhccCCCCCcch------hhHHHHHHHcCCCh--HHHHHHHHHHhhhhhcCchH--------hHHHHHHHHHhc---ch-
Confidence 777544322111 22234556666654 79999999999999886532 245566665542 00
Q ss_pred CccchhhhHHHHHHHHHHHHhcCCCchhHHHHHHhCCchHHHHHHHhcC---CcHHHHHHHHHHHhhhcccCCcCCCCCC
Q 001733 765 RTSRYASAYLEGLIGILVRFTTTLYEPQILFLARTHNFTSVFTELLMKT---SCDEVQKLAAIGLENLSSESINLSKPPQ 841 (1019)
Q Consensus 765 ~~~~~~~~~~e~a~~aL~~lt~~~~~~~~~~~~~~~g~i~~Lv~LL~~~---~~~~vk~~AA~aL~nLs~~~~~l~~~~~ 841 (1019)
.+ ++-+...|-.+.... ..+. -.-.++-++.+|..+ ..+.+|--.|.+|+.|....+..
T Consensus 905 ----k~---QyLLLhSlkevi~~~-svd~-----~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epes----- 966 (1233)
T KOG1824|consen 905 ----KR---QYLLLHSLKEVIVSA-SVDG-----LKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPES----- 966 (1233)
T ss_pred ----Hh---HHHHHHHHHHHHHHh-ccch-----hhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChHH-----
Confidence 01 111111111111100 1110 012334445555432 23456777788888877666420
Q ss_pred cCCcccccccccC-cccccCCCCCCCCCCCcccCCccccCccchhhhccchHHHHhhhccCchhhHHHHHHHHHhhhccC
Q 001733 842 IKSKKFMKFFSLP-KSLSVGSSKKKSVSLCPVHRGACSSQNTFCLIDAKAVDRLLACLYHENVEVVEAALSALCTLLDEK 920 (1019)
Q Consensus 842 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~c~v~~~~cs~~~~~~Lv~~gai~~Lv~lL~~~d~~v~~~Al~AL~~L~~d~ 920 (1019)
+++.+... +. ...+.+..+.+ .+.-.+-.-.+-.-......|...+.+++++|..|+++|+.++...+.+.
T Consensus 967 -----LlpkL~~~~~S-~a~~~rs~vvs--avKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNK 1038 (1233)
T KOG1824|consen 967 -----LLPKLKLLLRS-EASNTRSSVVS--AVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNK 1038 (1233)
T ss_pred -----HHHHHHHHhcC-CCcchhhhhhh--eeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccC
Confidence 11111000 00 00000000000 00000000000000112345788889999999999999999999999775
Q ss_pred c
Q 001733 921 V 921 (1019)
Q Consensus 921 ~ 921 (1019)
.
T Consensus 1039 p 1039 (1233)
T KOG1824|consen 1039 P 1039 (1233)
T ss_pred H
Confidence 4
No 68
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=0.0011 Score=78.57 Aligned_cols=205 Identities=12% Similarity=0.099 Sum_probs=116.5
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHhcCCChhHHHHHHHHHHHhccChhhhhhhhcccc
Q 001733 355 LTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSSHRPVRHESLLLLLELSSTRSLCEKIGSIPG 434 (1019)
Q Consensus 355 Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~~~~~~~i~~~~g 434 (1019)
|.+=|.+++.-++.-|+.+|++++ +++. .....|.+.++|++.++-+|..|+.++..+-........+
T Consensus 112 lknDL~s~nq~vVglAL~alg~i~--s~Em-----ardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~----- 179 (866)
T KOG1062|consen 112 LKNDLNSSNQYVVGLALCALGNIC--SPEM-----ARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH----- 179 (866)
T ss_pred HHhhccCCCeeehHHHHHHhhccC--CHHH-----hHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH-----
Confidence 334456778888889999999987 2222 1344678889999999999999998887775433222222
Q ss_pred hHHHHHHhhhcCCCChHHHHHHHHHHHHhcC-CCCchHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC---cc-
Q 001733 435 GILVLITFKFNWSIDVFAAEIADQILRNLER-NPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLG---HD- 509 (1019)
Q Consensus 435 ~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~-~~~n~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~---~~- 509 (1019)
.++.-.++|. ..++.+.-.+...+..+|. ++++....-+ .++- -+.+|.++... ++
T Consensus 180 f~~~~~~lL~--ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~---------------lV~iLk~l~~~~yspey 240 (866)
T KOG1062|consen 180 FVIAFRKLLC--EKHHGVLIAGLHLITELCKISPDALSYFRD--LVPS---------------LVKILKQLTNSGYSPEY 240 (866)
T ss_pred hhHHHHHHHh--hcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHH---------------HHHHHHHHhcCCCCCcc
Confidence 2233444442 2334444555555555553 2222222222 3333 34445555442 21
Q ss_pred cccccccch----HHHHHHHHhcCChHHHHHHHHHHHHhhcCCcc---hHHHHHcCcHHHHHHHHhhhccCCCChhHHHH
Q 001733 510 SKINVPGRA----ASTLIRMVHSGNSLTRRIAFKALMQISSHHPS---CKILVEAGIVQVMAEEMFIRIIHNEPMNSKEE 582 (1019)
Q Consensus 510 ~~~~i~~~~----i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~---~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~ 582 (1019)
+-..|-+.. +-.++++|..++++..+.-..+|..++++.+. ....+=.-.|..++.+.. . ..+++.
T Consensus 241 dv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~-~------~~Lrvl 313 (866)
T KOG1062|consen 241 DVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRS-N------SGLRVL 313 (866)
T ss_pred CccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccC-C------chHHHH
Confidence 111222211 23445667778888888889999999876653 222222223444444222 1 378899
Q ss_pred HHHHHHHHHhcCCCc
Q 001733 583 AAAILANILESGLEH 597 (1019)
Q Consensus 583 A~~~L~~L~~~~~~~ 597 (1019)
|+.+|..+..+....
T Consensus 314 ainiLgkFL~n~d~N 328 (866)
T KOG1062|consen 314 AINILGKFLLNRDNN 328 (866)
T ss_pred HHHHHHHHhcCCccc
Confidence 999999887775543
No 69
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.27 E-value=2.8e-05 Score=85.48 Aligned_cols=269 Identities=17% Similarity=0.170 Sum_probs=185.9
Q ss_pred HHHHhcCCHHHHHHHhcCCChh--HHHHHHHHHHHhccChhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHh
Q 001733 386 EMIAETMDISILIKLLSSSHRP--VRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNL 463 (1019)
Q Consensus 386 ~~I~~~g~i~~Lv~lL~~~~~~--~r~~Aa~~L~~Ls~~~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nL 463 (1019)
..|...|+++.|++++...+.+ +|..|+.+|-.+.. .+|++.+.. .| ...++.+.+ ..+.++..+..+.+|.++
T Consensus 174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~-aeN~d~va~-~~-~~~Il~lAK-~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV-AENRDRVAR-IG-LGVILNLAK-EREPVELARSVAGILEHM 249 (832)
T ss_pred hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh-hhhhhHHhh-cc-chhhhhhhh-hcCcHHHHHHHHHHHHHH
Confidence 4556789999999999998765 48889988887754 355666544 22 333333332 356788899999999999
Q ss_pred cCCC-CchHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC--cccccccccc-hHHHHHHHHhcCChHHHHHHHH
Q 001733 464 ERNP-DNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLG--HDSKINVPGR-AASTLIRMVHSGNSLTRRIAFK 539 (1019)
Q Consensus 464 s~~~-~n~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~--~~~~~~i~~~-~i~~Lv~lL~~~~~~~~~~A~~ 539 (1019)
-.+. +.+..++++|+++.++-..+..++.+...++-+|.|++.+ .+.+..+.+. +-.-|.-+..+.+.-.+-.|+-
T Consensus 250 FKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~ACl 329 (832)
T KOG3678|consen 250 FKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACL 329 (832)
T ss_pred hhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHH
Confidence 8654 4678999999999999999888999999999999999874 5677777764 5667777777777778889999
Q ss_pred HHHHhhcCCcchHHHHHcCc---HHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCcccccccccCcccchhhhHH
Q 001733 540 ALMQISSHHPSCKILVEAGI---VQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVY 616 (1019)
Q Consensus 540 aL~~Ls~~~~~~~~l~~~G~---v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~ 616 (1019)
+..-|+++.+--..+.+.|. |++|+..+. |.+..+.+-. -+++ ...+.++
T Consensus 330 AV~vlat~KE~E~~VrkS~TlaLVEPlva~~D-------P~~FARD~hd----~aQG----------------~~~d~Lq 382 (832)
T KOG3678|consen 330 AVAVLATNKEVEREVRKSGTLALVEPLVASLD-------PGRFARDAHD----YAQG----------------RGPDDLQ 382 (832)
T ss_pred HHhhhhhhhhhhHHHhhccchhhhhhhhhccC-------cchhhhhhhh----hhcc----------------CChHHHH
Confidence 99999988776566666665 455554332 2232222111 0111 1256788
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHhC--CCCchHHHHHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHhCcC
Q 001733 617 NIIYMLKNSTPDELNVHLIRILQCLTK--SPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTLSPY 689 (1019)
Q Consensus 617 ~Ll~LL~~~~~~~v~~~a~~aL~~La~--~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~~vr~~A~~~L~~Ls~~ 689 (1019)
.|+.||.+ .--+.| ++.+++-.+. ..+- +.-.+.+.+-|+++.|-++.++++..--.-|.++|..+...
T Consensus 383 RLvPlLdS-~R~EAq--~i~AF~l~~EAaIKs~-Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEE 453 (832)
T KOG3678|consen 383 RLVPLLDS-NRLEAQ--CIGAFYLCAEAAIKSL-QGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEE 453 (832)
T ss_pred Hhhhhhhc-chhhhh--hhHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhccc
Confidence 99999986 444444 3444433221 1110 11124667789999999999998887777888888888753
No 70
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.24 E-value=2.9e-07 Score=73.66 Aligned_cols=59 Identities=19% Similarity=0.372 Sum_probs=33.2
Q ss_pred CccccccCcccCCCceec-CCCccccHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCccCHhHHHHH
Q 001733 232 ETFYCPLTKEIMDDPVTI-ESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVALKTTI 297 (1019)
Q Consensus 232 ~~~~Cpi~~~~m~dPv~~-~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~~~~l~pn~~Lr~~I 297 (1019)
+-+.|++|.++|++||.+ .|+|.||+.||.+.+.. .||+|..|-...++.-|..|.++|
T Consensus 6 ~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~-------~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 6 ELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS-------ECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp HTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT-------B-SSS--B-S-SS----HHHHHHH
T ss_pred HhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC-------CCCCcCChHHHHHHHhhhhhhccC
Confidence 357899999999999975 99999999999774443 499999998888999999998876
No 71
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=0.0017 Score=76.46 Aligned_cols=430 Identities=15% Similarity=0.108 Sum_probs=235.8
Q ss_pred hHHHHHHhhcCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHhcCC--ChhHHHHHHHHHHHhcc--Chhhhh
Q 001733 352 LPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSS--HRPVRHESLLLLLELSS--TRSLCE 427 (1019)
Q Consensus 352 i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL~~~--~~~~r~~Aa~~L~~Ls~--~~~~~~ 427 (1019)
+..|.+. -|+|+.++.+|-.-|..++..+ -.+.+..|...|... +...|..|.-.|.|--. +++.+.
T Consensus 4 ~~~le~t-lSpD~n~~~~Ae~~l~~~~~~n--------f~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~ 74 (859)
T KOG1241|consen 4 LELLEKT-LSPDQNVRKRAEKQLEQAQSQN--------FPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQ 74 (859)
T ss_pred HHHHHHH-cCCCcchHHHHHHHHHHHHhcc--------HHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHH
Confidence 4445553 3567888888888888876322 123445566666543 34566666666666432 222222
Q ss_pred hhhcc----cc----hHHH-HHHhhhcCCCChHHHHHHHHHHHHhcC--CCCchHHHHhcCChHHHHHHhccCC-HHHHH
Q 001733 428 KIGSI----PG----GILV-LITFKFNWSIDVFAAEIADQILRNLER--NPDNIKCMAENGLLEPLMHHLNEGS-EEIQM 495 (1019)
Q Consensus 428 ~i~~~----~g----~I~~-LV~lL~~~~~~~~~~~~A~~aL~nLs~--~~~n~~~i~~~G~i~~Lv~lL~~~~-~~~~~ 495 (1019)
..... .- -|.. +.+-| ++..|.....|+.++..++. -+.|.+. +.++.|+.-..++. ..++.
T Consensus 75 ~~~qRWl~l~~e~reqVK~~il~tL--~~~ep~~~s~Aaq~va~IA~~ElP~n~wp----~li~~lv~nv~~~~~~~~k~ 148 (859)
T KOG1241|consen 75 QYQQRWLQLPAEIREQVKNNILRTL--GSPEPRRPSSAAQCVAAIACIELPQNQWP----ELIVTLVSNVGEEQASMVKE 148 (859)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHc--CCCCCCccchHHHHHHHHHHhhCchhhCH----HHHHHHHHhcccccchHHHH
Confidence 11110 00 0111 11122 23334444555555555542 2333322 23444454444333 35888
Q ss_pred HHHHHHHHhccCccccccccc--chHHHHHHHHhc--CChHHHHHHHHHHHHhhcCCc-chHHHHHcC-cHHHHHHHHhh
Q 001733 496 EMASYLGEIVLGHDSKINVPG--RAASTLIRMVHS--GNSLTRRIAFKALMQISSHHP-SCKILVEAG-IVQVMAEEMFI 569 (1019)
Q Consensus 496 ~aa~~L~~La~~~~~~~~i~~--~~i~~Lv~lL~~--~~~~~~~~A~~aL~~Ls~~~~-~~~~l~~~G-~v~~Lv~lL~~ 569 (1019)
..+.+|+-+|.+-.-...... .++..++.-++. ++..+|-.|+.+|.|--.... |-..=.+.. .+....+.
T Consensus 149 ~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEa--- 225 (859)
T KOG1241|consen 149 SSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEA--- 225 (859)
T ss_pred HHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeec---
Confidence 999999999985333322222 256666654443 467799999999998543221 100001111 11222221
Q ss_pred hccCCCChhHHHHHHHHHHHHHhcCCCcccccccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCch-
Q 001733 570 RIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPM- 648 (1019)
Q Consensus 570 ~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~La~~~~~~- 648 (1019)
+.+...+++.+|..+|..|..--... + ..-..+.....-+.-+++ .++.+...++.--+.+|.-.-..
T Consensus 226 --tq~~d~~i~~aa~~ClvkIm~LyY~~--m------~~yM~~alfaitl~amks-~~deValQaiEFWsticeEEiD~~ 294 (859)
T KOG1241|consen 226 --TQSPDEEIQVAAFQCLVKIMSLYYEF--M------EPYMEQALFAITLAAMKS-DNDEVALQAIEFWSTICEEEIDLA 294 (859)
T ss_pred --ccCCcHHHHHHHHHHHHHHHHHHHHH--H------HHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 12233578888888888776642211 0 001112233333444555 88999888888777677522110
Q ss_pred HHHHHHHHH---------------cCChHHHHHhhcCCC-------HHHHHHHHHHHHHhCcCCChhHHHHhhhcCCChh
Q 001733 649 ATIVSVIKE---------------TEASYSLLEVINNPH-------DELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPE 706 (1019)
Q Consensus 649 ~~i~~~i~~---------------~g~i~~Lv~LL~~~~-------~~vr~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~ 706 (1019)
.+. ....+ .+.+|.|+++|...+ -..-.+|..+|..++...++.++.++ ++
T Consensus 295 ~e~-~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~V------l~ 367 (859)
T KOG1241|consen 295 IEY-GEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHV------LP 367 (859)
T ss_pred HHH-HHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhh------HH
Confidence 000 01111 255677777775421 24667777777777655555444322 22
Q ss_pred HhhcccCCCCcChHHHHHHHHHHhccCCCChhhHHHHHhCCChHHHHHHHHhhhccCCCccchhhhHHHHHHHHHHHHhc
Q 001733 707 NLIQCPTETIHITEKQAVSAKFLAKLPHQNLTLNLALSARNVVPTILQTINLIQRSGTRTSRYASAYLEGLIGILVRFTT 786 (1019)
Q Consensus 707 ~LV~lL~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~lt~ 786 (1019)
-+-.-++++ +..-+.+|+.+++.+-.+....+..=+-.+++|.++.++.+ ..-++++.+.+.|.+++.
T Consensus 368 Fiee~i~~p--dwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D----------~sl~VkdTaAwtlgrI~d 435 (859)
T KOG1241|consen 368 FIEENIQNP--DWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSD----------PSLWVKDTAAWTLGRIAD 435 (859)
T ss_pred HHHHhcCCc--chhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcC----------chhhhcchHHHHHHHHHh
Confidence 222344444 47888899999988877655555555667899999999864 234566777788888776
Q ss_pred CCCchhH-HHHHHhCCchHHHHHHHhcCCcHHHHHHHHHHHhhhcccC
Q 001733 787 TLYEPQI-LFLARTHNFTSVFTELLMKTSCDEVQKLAAIGLENLSSES 833 (1019)
Q Consensus 787 ~~~~~~~-~~~~~~~g~i~~Lv~LL~~~~~~~vk~~AA~aL~nLs~~~ 833 (1019)
. .|+. .........++.|++-|.+ .|.+-.+++||+.+|+..-
T Consensus 436 ~--l~e~~~n~~~l~~~l~~l~~gL~D--ePrva~N~CWAf~~Laea~ 479 (859)
T KOG1241|consen 436 F--LPEAIINQELLQSKLSALLEGLND--EPRVASNVCWAFISLAEAA 479 (859)
T ss_pred h--chhhcccHhhhhHHHHHHHHHhhh--CchHHHHHHHHHHHHHHHH
Confidence 4 3322 2233345667777777776 7899999999999998544
No 72
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=0.00021 Score=75.66 Aligned_cols=290 Identities=16% Similarity=0.155 Sum_probs=186.5
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhhccCChhHHHHHH-hcCCHHHHHHHhcCCChhHHHHHHHHHHHhccChhhhhhhhcc
Q 001733 354 LLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIA-ETMDISILIKLLSSSHRPVRHESLLLLLELSSTRSLCEKIGSI 432 (1019)
Q Consensus 354 ~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~-~~g~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~~~~~~~i~~~ 432 (1019)
-++.+|.+.++.++..|+..|..++.. ..+.... +.-.++.+..++....+ -+.|+.+|.|+|..+..++.+...
T Consensus 7 elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~ 82 (353)
T KOG2973|consen 7 ELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQD 82 (353)
T ss_pred HHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHH
Confidence 478899999999999999999999733 3333332 24468889999987655 578999999999999999988763
Q ss_pred cchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHHH---h----cCChHHHHHHhccC-CH-HHHHHHHHHHHH
Q 001733 433 PGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMA---E----NGLLEPLMHHLNEG-SE-EIQMEMASYLGE 503 (1019)
Q Consensus 433 ~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~---~----~G~i~~Lv~lL~~~-~~-~~~~~aa~~L~~ 503 (1019)
.+..++.++-+ ......+..+.+|.||+..++....+. . .|.+.........+ +. .--...+.++.|
T Consensus 83 --~~k~l~~~~~~--p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~n 158 (353)
T KOG2973|consen 83 --LLKVLMDMLTD--PQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFAN 158 (353)
T ss_pred --HHHHHHHHhcC--cccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHH
Confidence 77778887742 223456788899999998887654433 1 34444444444432 22 233467789999
Q ss_pred hccCccccccccc-c-h-HHHHHHHHhcCChHHHHHHHHHHHHhhcCCcchHHHHHcCcHHHHHHHHhhhccCCCChhHH
Q 001733 504 IVLGHDSKINVPG-R-A-ASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSK 580 (1019)
Q Consensus 504 La~~~~~~~~i~~-~-~-i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~ 580 (1019)
|+..+.+|..+.+ . . ...|+.+-..++.-=+...+++|.|+|-+...+..+++ -.+..|..+|..-. +|...-
T Consensus 159 ls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~-e~~~lLp~iLlPla---gpee~s 234 (353)
T KOG2973|consen 159 LSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLD-ESINLLPAILLPLA---GPEELS 234 (353)
T ss_pred HhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhc-chHHHHHHHHhhcC---CccccC
Confidence 9999999988866 3 2 34444444323333455688999999998888888777 33444444343211 011111
Q ss_pred HHHHHHHHHHHhcCCCcccccccccCcccchhhhHHHHHHHHcC----CCCHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 001733 581 EEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKN----STPDELNVHLIRILQCLTKSPKPMATIVSVIK 656 (1019)
Q Consensus 581 ~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~----~~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~ 656 (1019)
+.= + .+.-.. +++|-. .+++.++...+.+|.-||....+ |+.++
T Consensus 235 EEd---m------------------------~~LP~e-LQyLp~dKeRepdpdIrk~llEai~lLcaT~~G----Re~lR 282 (353)
T KOG2973|consen 235 EED---M------------------------AKLPVE-LQYLPEDKEREPDPDIRKMLLEALLLLCATRAG----REVLR 282 (353)
T ss_pred HHH---H------------------------hcCCHh-hhcCCccccCCCChHHHHHHHHHHHHHHhhhHh----HHHHH
Confidence 100 0 001111 133321 17899999999999999986554 66777
Q ss_pred HcCChHHHHHhhc-CCCHHHHHHHHHHHHHhC
Q 001733 657 ETEASYSLLEVIN-NPHDELAVAAIKLLTTLS 687 (1019)
Q Consensus 657 ~~g~i~~Lv~LL~-~~~~~vr~~A~~~L~~Ls 687 (1019)
..|+.+.+-.+=. .++++++..+-.....|-
T Consensus 283 ~kgvYpilRElhk~e~ded~~~ace~vvq~Lv 314 (353)
T KOG2973|consen 283 SKGVYPILRELHKWEEDEDIREACEQVVQMLV 314 (353)
T ss_pred hcCchHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 7666655544333 346778887666655444
No 73
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.17 E-value=0.003 Score=73.76 Aligned_cols=258 Identities=13% Similarity=0.134 Sum_probs=155.7
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHHHHhhcCCc---chHHHHHcCcHHHHHHHHhhhccCCCChhHHH---HHHHHHHHHH
Q 001733 518 AASTLIRMVHSGNSLTRRIAFKALMQISSHHP---SCKILVEAGIVQVMAEEMFIRIIHNEPMNSKE---EAAAILANIL 591 (1019)
Q Consensus 518 ~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~---~~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~---~A~~~L~~L~ 591 (1019)
.+...+..|++.++.++.+|+..+..|+.--. .-+.|...|+| |.+.|... . +++-- .|..++.|..
T Consensus 800 i~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylgee----y-pEvLgsILgAikaI~nvi 872 (1172)
T KOG0213|consen 800 ICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGEE----Y-PEVLGSILGAIKAIVNVI 872 (1172)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCcc----c-HHHHHHHHHHHHHHHHhc
Confidence 35566778899999999999999988874322 23344445543 44444322 1 23322 3333333332
Q ss_pred hcCCCcccccccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCC
Q 001733 592 ESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNP 671 (1019)
Q Consensus 592 ~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~ 671 (1019)
.-..-. ---.++++.|...|++ .+..++++++..+..+|.........++-|+- --.|+++|.+.
T Consensus 873 gm~km~-----------pPi~dllPrltPILkn-rheKVqen~IdLvg~IadrgpE~v~aREWMRI---cfeLlelLkah 937 (1172)
T KOG0213|consen 873 GMTKMT-----------PPIKDLLPRLTPILKN-RHEKVQENCIDLVGTIADRGPEYVSAREWMRI---CFELLELLKAH 937 (1172)
T ss_pred cccccC-----------CChhhhcccchHhhhh-hHHHHHHHHHHHHHHHHhcCcccCCHHHHHHH---HHHHHHHHHHH
Confidence 111001 1126789999999999 99999999999999999766543444554442 23588899999
Q ss_pred CHHHHHHHHHHHHHhCcCCChhHHHHhhhcCCChhHhhcccCCCCcChHHHHHHHH--HHhccCCCChhhHHHHHhCCCh
Q 001733 672 HDELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCPTETIHITEKQAVSAK--FLAKLPHQNLTLNLALSARNVV 749 (1019)
Q Consensus 672 ~~~vr~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~LV~lL~~~~~~~~~~~~A~~--~L~nL~~~~~~~~~~l~~~g~l 749 (1019)
+.++|++|...+.+++...+.. ..+..|++-|+.. +-+...+. +|+-... -.|-+
T Consensus 938 kK~iRRaa~nTfG~IakaIGPq---------dVLatLlnnLkvq----eRq~RvcTtvaIaIVaE----------~c~pF 994 (1172)
T KOG0213|consen 938 KKEIRRAAVNTFGYIAKAIGPQ---------DVLATLLNNLKVQ----ERQNRVCTTVAIAIVAE----------TCGPF 994 (1172)
T ss_pred HHHHHHHHHhhhhHHHHhcCHH---------HHHHHHHhcchHH----HHHhchhhhhhhhhhhh----------hcCch
Confidence 9999999999999999654431 2333444444322 21211111 1111111 13444
Q ss_pred HHHHHHHHhhhccCCCccchhhhHHHHHHHHHHHHhcCCCchhHHHHHHh--CCchHHHHHHHhcCCcHHHHHHHHHHHh
Q 001733 750 PTILQTINLIQRSGTRTSRYASAYLEGLIGILVRFTTTLYEPQILFLART--HNFTSVFTELLMKTSCDEVQKLAAIGLE 827 (1019)
Q Consensus 750 ~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~lt~~~~~~~~~~~~~~--~g~i~~Lv~LL~~~~~~~vk~~AA~aL~ 827 (1019)
..|-.++.+-+.. ...++.+.+.+|+.+-. ..-+...+ +-+.|.|-+-|.+ .+..-|..|+.++.
T Consensus 995 tVLPalmneYrtP-------e~nVQnGVLkalsf~Fe-----yigemskdYiyav~PlleDAlmD-rD~vhRqta~~~I~ 1061 (1172)
T KOG0213|consen 995 TVLPALMNEYRTP-------EANVQNGVLKALSFMFE-----YIGEMSKDYIYAVTPLLEDALMD-RDLVHRQTAMNVIK 1061 (1172)
T ss_pred hhhHHHHhhccCc-------hhHHHHhHHHHHHHHHH-----HHHHHhhhHHHHhhHHHHHhhcc-ccHHHHHHHHHHHH
Confidence 4555556543222 23456667777765542 11111122 4677999999999 88889999999999
Q ss_pred hhcccC
Q 001733 828 NLSSES 833 (1019)
Q Consensus 828 nLs~~~ 833 (1019)
+++.+.
T Consensus 1062 Hl~Lg~ 1067 (1172)
T KOG0213|consen 1062 HLALGV 1067 (1172)
T ss_pred HHhcCC
Confidence 998653
No 74
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.16 E-value=1.3e-06 Score=68.89 Aligned_cols=47 Identities=19% Similarity=0.323 Sum_probs=40.7
Q ss_pred CccccccCcccCCCceecCCCcc-ccHHHHHHHHhhhccCCCCCCCCCCCCCC
Q 001733 232 ETFYCPLTKEIMDDPVTIESGVT-YERNAITAWFEKFETSGDIFCPTTGKKLM 283 (1019)
Q Consensus 232 ~~~~Cpi~~~~m~dPv~~~~g~t-~~r~~I~~~~~~~~~~~~~~cP~~~~~l~ 283 (1019)
+++.|+||.+-++++++.+|||. ||..|+.+|+.. ...||+|++++.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-----~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLKR-----KKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHT-----TSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhccc-----CCCCCcCChhhc
Confidence 46889999999999999999999 999999999986 568999998764
No 75
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.16 E-value=1.4e-06 Score=91.16 Aligned_cols=49 Identities=14% Similarity=0.289 Sum_probs=41.6
Q ss_pred CCCccccccCcccCCCc--------eecCCCccccHHHHHHHHhhhccCCCCCCCCCCCCCC
Q 001733 230 LYETFYCPLTKEIMDDP--------VTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLM 283 (1019)
Q Consensus 230 ~~~~~~Cpi~~~~m~dP--------v~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~ 283 (1019)
..++..||||++.+.+| ++.+|||+||+.||.+|+.. ..+||.|+.++.
T Consensus 171 ~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-----~~tCPlCR~~~~ 227 (238)
T PHA02929 171 RSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-----KNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-----CCCCCCCCCEee
Confidence 45678999999987764 56799999999999999876 568999998765
No 76
>PF05536 Neurochondrin: Neurochondrin
Probab=98.16 E-value=0.0047 Score=74.03 Aligned_cols=427 Identities=16% Similarity=0.147 Sum_probs=240.4
Q ss_pred CHHHHHHHHHHHHHHHhccccc---chHHHhcCChHHHHHHhhc-------CCHHHHHHHHHHHHhhccCChhHHHHHHh
Q 001733 321 SDRMVLEAIKDLQTVCQRKQYN---KVQVRNVGVLPLLTKLLEY-------KDRNVRCAAMELLRQLVVEDDEGKEMIAE 390 (1019)
Q Consensus 321 ~~~~~~~Al~~L~~l~~~~~~~---r~~i~~~g~i~~Lv~lL~s-------~~~~~~~~Al~~L~~La~~~~~~k~~I~~ 390 (1019)
+++++..++--+..+++.++.+ +..|.++=+.++|-++|.+ +....+.-|+.+|..++ .+++....=--
T Consensus 18 ~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~-~~~~~a~~~~~ 96 (543)
T PF05536_consen 18 DDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC-RDPELASSPQM 96 (543)
T ss_pred CcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc-CChhhhcCHHH
Confidence 3677888888888888876643 3456677667999999987 23566778999999998 45555322222
Q ss_pred cCCHHHHHHHhcCCCh-hHHHHHHHHHHHhccChhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCc
Q 001733 391 TMDISILIKLLSSSHR-PVRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDN 469 (1019)
Q Consensus 391 ~g~i~~Lv~lL~~~~~-~~r~~Aa~~L~~Ls~~~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n 469 (1019)
.+-||.|++++.+.+. ++...|..+|..++.+++.++.+.. .|+|+.|+..+.+ .+...+.|..+|.+++...+.
T Consensus 97 ~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~-~g~v~~L~ei~~~---~~~~~E~Al~lL~~Lls~~~~ 172 (543)
T PF05536_consen 97 VSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLE-SGAVPALCEIIPN---QSFQMEIALNLLLNLLSRLGQ 172 (543)
T ss_pred HHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHh-cCCHHHHHHHHHh---CcchHHHHHHHHHHHHHhcch
Confidence 3679999999988777 9999999999999999999999976 8999999999863 456688999999998754331
Q ss_pred hHHHHh-----cCChHHHHHHhccCCHHHHHHHHHHHHHhccCcccc--ccc-cc----chHHHHHHHHhcC-ChHHHHH
Q 001733 470 IKCMAE-----NGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDSK--INV-PG----RAASTLIRMVHSG-NSLTRRI 536 (1019)
Q Consensus 470 ~~~i~~-----~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~--~~i-~~----~~i~~Lv~lL~~~-~~~~~~~ 536 (1019)
. .+-+ ...++.|-..+.......+...+..|..+-...+.. ... .. .....+..+|.+. .+..|..
T Consensus 173 ~-~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~ 251 (543)
T PF05536_consen 173 K-SWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDP 251 (543)
T ss_pred h-hhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHH
Confidence 1 1111 134455555555555667778888888876544211 111 11 1335555677764 4556666
Q ss_pred HHHHHHHhhcCCcchHHHHHcC-----cHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCcccccccccCcccc-
Q 001733 537 AFKALMQISSHHPSCKILVEAG-----IVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMV- 610 (1019)
Q Consensus 537 A~~aL~~Ls~~~~~~~~l~~~G-----~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~- 610 (1019)
|+.....|.......-.+.+.. ..-.++++... +++ ..|-.|+......... .....+.
T Consensus 252 al~Laa~Ll~~~G~~wl~~~~~~~~~~F~~Llv~l~~V--------Eir----~~L~~L~~~~~~~~~~---~~~~~L~~ 316 (543)
T PF05536_consen 252 ALNLAASLLDLLGPEWLFADDKKSGKKFLLLLVNLACV--------EIR----MSLEELLEQLNPEEYP---EKQRLLAS 316 (543)
T ss_pred HHHHHHHHHHHhChHhhcCCCCCCcccHHHHHHHHHHH--------HHH----HHhHHhhhcCCchhhH---HHHHHHHH
Confidence 6655555543322211112221 22223332221 111 1111111111000000 0000011
Q ss_pred hhhhHHHHHHHHcCC-------CCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCC------CHHHHH
Q 001733 611 SDYVVYNIIYMLKNS-------TPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNP------HDELAV 677 (1019)
Q Consensus 611 ~~~~i~~Ll~LL~~~-------~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~------~~~vr~ 677 (1019)
--.+++.++.++-+. .+++...++. +.+. +.+...+.+|+.- ++....
T Consensus 317 cf~ilE~~I~~l~~~~~~~~~~~~~~~l~kl~-----------------~~l~--e~~~~vle~L~~~~d~~~~d~~~vl 377 (543)
T PF05536_consen 317 CFSILEHFIGYLVRSLEEESLDLDPDTLLKLR-----------------TSLS--ETFSAVLEYLRDVWDESQKDPDFVL 377 (543)
T ss_pred HHHHHHHHHHHHHhccccccCCCCHHHHHHHH-----------------HHHH--HHHHHHHHHHHHhhhccccchHHHH
Confidence 112344444444331 0111111111 1111 2334444555432 123556
Q ss_pred HHHHHHHHhCcCCChhHHHHhhhcCCChhHhhcccCCCCcC--------hHHHHHHHHHHhccCCCChhhHHHHHhCCCh
Q 001733 678 AAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCPTETIHI--------TEKQAVSAKFLAKLPHQNLTLNLALSARNVV 749 (1019)
Q Consensus 678 ~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~LV~lL~~~~~~--------~~~~~~A~~~L~nL~~~~~~~~~~l~~~g~l 749 (1019)
+++++|+.--...+....+.+. +.++-++.+.+.+... .+....-+-.|+.+.. ++.-++.+...|+.
T Consensus 378 AsvR~L~~WLaEe~~~lr~~v~---~Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~-e~~gr~~l~~~~g~ 453 (543)
T PF05536_consen 378 ASVRVLGAWLAEETSALRKEVY---GLLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTA-EEEGRKILLSNGGW 453 (543)
T ss_pred HHHHHHHHHHHhChHHHHHHHH---HHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhhc-cHHHHHHHHhCCcH
Confidence 6667665433333333444443 6788888888766521 1344555666778877 66667899999998
Q ss_pred HHHHHHHHhhh-ccCCCcc--chhhhHHHHHHHHHHHHhcCCCchhH
Q 001733 750 PTILQTINLIQ-RSGTRTS--RYASAYLEGLIGILVRFTTTLYEPQI 793 (1019)
Q Consensus 750 ~~Lv~lL~~~~-~~~~~~~--~~~~~~~e~a~~aL~~lt~~~~~~~~ 793 (1019)
..+.+.+-..- ......+ .....-+..+++++.|++.. +|+.
T Consensus 454 ~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~c~illNl~~~--e~~~ 498 (543)
T PF05536_consen 454 KLLCDDLLKILQSPSGDDDAEDSAEMALVTACGILLNLVVT--EPKM 498 (543)
T ss_pred HHHHHHHHHHHHhcccCcchhhhhHHHHHHHHHHHHHHHhc--cccc
Confidence 88887654321 1111111 11112456689999999865 4444
No 77
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=2.6e-06 Score=103.24 Aligned_cols=73 Identities=27% Similarity=0.417 Sum_probs=67.5
Q ss_pred ccCCCCccccccCcccCCCceecC-CCccccHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCccCHhHHHHHHHHHHHc
Q 001733 227 IEPLYETFYCPLTKEIMDDPVTIE-SGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVALKTTIEEWKDRN 304 (1019)
Q Consensus 227 ~~~~~~~~~Cpi~~~~m~dPv~~~-~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~~~~l~pn~~Lr~~I~~w~~~~ 304 (1019)
..++|++|..|++..+|+|||++| +|+|.||+.|++++-+ ..+.|+||++|+...++||..||.-|+.|....
T Consensus 864 l~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs-----~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek 937 (943)
T KOG2042|consen 864 LGDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLS-----DCTDPFNREPLTEDMVSPNEELKAKIRCWIKEK 937 (943)
T ss_pred hccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhc-----CCCCccccccCchhhcCCCHHHHHHHHHHHHHh
Confidence 446999999999999999999998 8999999999999987 468999999999999999999999999997653
No 78
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=1.9e-06 Score=87.37 Aligned_cols=59 Identities=15% Similarity=0.332 Sum_probs=52.3
Q ss_pred CccccccCcccCCCceecCCCccccHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCccCHh
Q 001733 232 ETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVA 292 (1019)
Q Consensus 232 ~~~~Cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~~~~l~pn~~ 292 (1019)
..|-|-||++.-+|||+..|||-||=-||.+|+.. ..+...||+|+...+...++|=|.
T Consensus 46 ~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~--~~~~~~cPVCK~~Vs~~~vvPlYG 104 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQT--RPNSKECPVCKAEVSIDTVVPLYG 104 (230)
T ss_pred CceeeeeeccccCCCEEeecccceehHHHHHHHhh--cCCCeeCCccccccccceEEeeec
Confidence 57999999999999999999999999999999986 235677999999999988888553
No 79
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=0.0024 Score=76.75 Aligned_cols=376 Identities=12% Similarity=0.137 Sum_probs=233.2
Q ss_pred HHHHHHHHHHHHhhccCChhHHHHHH----hcCCHHHHHHHhcC-CChhHHHHHHHHHHHhccChhhhhhhhcccchHHH
Q 001733 364 RNVRCAAMELLRQLVVEDDEGKEMIA----ETMDISILIKLLSS-SHRPVRHESLLLLLELSSTRSLCEKIGSIPGGILV 438 (1019)
Q Consensus 364 ~~~~~~Al~~L~~La~~~~~~k~~I~----~~g~i~~Lv~lL~~-~~~~~r~~Aa~~L~~Ls~~~~~~~~i~~~~g~I~~ 438 (1019)
..-.+-++++|.|+.+.+++...... --|-.+.++..|.. +++.++..|...+..+..+.+....+.. .|.+..
T Consensus 1739 ~~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~-~~vL~~ 1817 (2235)
T KOG1789|consen 1739 ETKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLAT-CNVLTT 1817 (2235)
T ss_pred HHHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHh-hhHHHH
Confidence 34566789999999888875443332 23677788877764 6778999999999999999999998875 789999
Q ss_pred HHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHHHhcCChHHHHHHhc-cCCHHHHHHHHHHHHHhccCcc--cccccc
Q 001733 439 LITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLN-EGSEEIQMEMASYLGEIVLGHD--SKINVP 515 (1019)
Q Consensus 439 LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~lL~-~~~~~~~~~aa~~L~~La~~~~--~~~~i~ 515 (1019)
|..+|. .-|..+..++.+|+.|+++++..+...+.|++.-+..++. +.++..+..++..|+.|..++- -|..|.
T Consensus 1818 LL~lLH---S~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~IT 1894 (2235)
T KOG1789|consen 1818 LLTLLH---SQPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTIT 1894 (2235)
T ss_pred HHHHHh---cChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeee
Confidence 999994 3577899999999999999998888889999888888875 5678899999999999987542 233332
Q ss_pred c-chH-HHHHHHHhcCChHHHHHHHHHHHHhhcCCcc--hHHHHH--cCcHHHHHHHHhhhccCCCChhHH--HHHHHHH
Q 001733 516 G-RAA-STLIRMVHSGNSLTRRIAFKALMQISSHHPS--CKILVE--AGIVQVMAEEMFIRIIHNEPMNSK--EEAAAIL 587 (1019)
Q Consensus 516 ~-~~i-~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~--~~~l~~--~G~v~~Lv~lL~~~~~~~~~~~~~--~~A~~~L 587 (1019)
- ..+ ..++..+++ +| |.++.++-.-..+++- -..+.+ .|.|..++.-+...+.++.....+ |..+. -
T Consensus 1895 L~kFLP~~f~d~~RD-~P---EAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg-~ 1969 (2235)
T KOG1789|consen 1895 LIKFLPEIFADSLRD-SP---EAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAG-T 1969 (2235)
T ss_pred hHHhchHHHHHHHhc-CH---HHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcc-h
Confidence 1 222 445666665 33 5555555544444431 112222 455666655444332111000000 11111 0
Q ss_pred HHH----HhcCCCcccccccccC----cccchhhhHHHHHHHHcCCCCH--HHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 001733 588 ANI----LESGLEHHSLQVNSHG----HTMVSDYVVYNIIYMLKNSTPD--ELNVHLIRILQCLTKSPKPMATIVSVIKE 657 (1019)
Q Consensus 588 ~~L----~~~~~~~~~~~v~~~g----~~l~~~~~i~~Ll~LL~~~~~~--~v~~~a~~aL~~La~~~~~~~~i~~~i~~ 657 (1019)
... +-++.-.+.+++++.- -..--.+.+.+++.++.. +++ ..-.-...++..|-+.... +.+.+-.
T Consensus 1970 ~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~-~~peqh~l~lLt~A~V~L~r~hP~---LADqip~ 2045 (2235)
T KOG1789|consen 1970 SEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSR-PTPEQHELDLLTKAFVELVRHHPN---LADQLPS 2045 (2235)
T ss_pred hhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcC-CCcccchhHHHHHHHHHHHHhCcc---hhhhCCC
Confidence 000 0000000111111110 001124567777778875 332 2333444455555554432 3345556
Q ss_pred cCChHHHHHhhcCCCHHHHHHHHHHHHHhCcCCChhHHHHhhhcCCChhHhhcccCCCCcChHHHHHHHHHHhccCC-CC
Q 001733 658 TEASYSLLEVINNPHDELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCPTETIHITEKQAVSAKFLAKLPH-QN 736 (1019)
Q Consensus 658 ~g~i~~Lv~LL~~~~~~vr~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~LV~lL~~~~~~~~~~~~A~~~L~nL~~-~~ 736 (1019)
.|-+|.++.-+...+..+-..|.+.|..|+.+ ..-.+.+... ..+..++..++... ....-|+.+|..+.. ..
T Consensus 2046 LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen--~~C~~AMA~l-~~i~~~m~~mkK~~---~~~GLA~EalkR~~~r~~ 2119 (2235)
T KOG1789|consen 2046 LGYLPKFCTAMCLQNTSAPRSAIRVLHELSEN--QFCCDAMAQL-PCIDGIMKSMKKQP---SLMGLAAEALKRLMKRNT 2119 (2235)
T ss_pred ccchHHHHHHHHhcCCcCcHHHHHHHHHHhhc--cHHHHHHhcc-ccchhhHHHHHhcc---hHHHHHHHHHHHHHHHhH
Confidence 79999999888877777778999999999853 2333444332 46666777765443 344466666666643 33
Q ss_pred hhhHHHHHhCCChHHHHHHHHh
Q 001733 737 LTLNLALSARNVVPTILQTINL 758 (1019)
Q Consensus 737 ~~~~~~l~~~g~l~~Lv~lL~~ 758 (1019)
.++.......|.+|.|+.+|..
T Consensus 2120 ~eLVAQ~LK~gLvpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2120 GELVAQMLKCGLVPYLLQLLDS 2141 (2235)
T ss_pred HHHHHHHhccCcHHHHHHHhcc
Confidence 4566677889999999999974
No 80
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.0067 Score=71.62 Aligned_cols=349 Identities=13% Similarity=0.076 Sum_probs=210.1
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHh----cCCCh-hHHHHHHHHHHHhccChhhhhhh
Q 001733 355 LTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLL----SSSHR-PVRHESLLLLLELSSTRSLCEKI 429 (1019)
Q Consensus 355 Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL----~~~~~-~~r~~Aa~~L~~Ls~~~~~~~~i 429 (1019)
+.+-|++..+.....|..++..++... + -.+..|-++..| ..+.+ .+++.++.+|..+|.+-+-...+
T Consensus 95 il~tL~~~ep~~~s~Aaq~va~IA~~E------l-P~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~ 167 (859)
T KOG1241|consen 95 ILRTLGSPEPRRPSSAAQCVAAIACIE------L-PQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLE 167 (859)
T ss_pred HHHHcCCCCCCccchHHHHHHHHHHhh------C-chhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHH
Confidence 345566666666666666666665211 1 123344444444 33333 48899999999999853222333
Q ss_pred hcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCC-chH-HHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhcc-
Q 001733 430 GSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPD-NIK-CMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVL- 506 (1019)
Q Consensus 430 ~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~-n~~-~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~- 506 (1019)
......+..+|.=.+....+..++-.|..+|+|--.... |-. .+-+.=.+...++.-.+.+.+++..+..+|..+..
T Consensus 168 ~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~L 247 (859)
T KOG1241|consen 168 QQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSL 247 (859)
T ss_pred HHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHH
Confidence 333455566665554445567788899999998642111 111 11111123344555566778899889889988876
Q ss_pred Ccc-cccccccchHHHHHHHHhcCChHHHHHHHHHHHHhhcCCcc----hHHHHH---------------cCcHHHHHHH
Q 001733 507 GHD-SKINVPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPS----CKILVE---------------AGIVQVMAEE 566 (1019)
Q Consensus 507 ~~~-~~~~i~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~----~~~l~~---------------~G~v~~Lv~l 566 (1019)
+-+ -...+.+...+.-+.-+++.++++.-+++..=.++|...-. -..+++ .+++|.|+++
T Consensus 248 yY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~ 327 (859)
T KOG1241|consen 248 YYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLEL 327 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHH
Confidence 222 22223333445556677788899888888777767642211 011111 3678899999
Q ss_pred HhhhccCCCCh--hHHHHHHHHHHHHHhcCCCcccccccccCcccchhhhHHHHHHH----HcCCCCHHHHHHHHHHHHH
Q 001733 567 MFIRIIHNEPM--NSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYM----LKNSTPDELNVHLIRILQC 640 (1019)
Q Consensus 567 L~~~~~~~~~~--~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~L----L~~~~~~~v~~~a~~aL~~ 640 (1019)
|...+.+...+ .....|..+|.-++....+ .+++..+.+ +++ ++..-++.|+-++..
T Consensus 328 L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D----------------~Iv~~Vl~Fiee~i~~-pdwr~reaavmAFGS 390 (859)
T KOG1241|consen 328 LTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGD----------------DIVPHVLPFIEENIQN-PDWRNREAAVMAFGS 390 (859)
T ss_pred HHhCCCCcccccCcHHHHHHHHHHHHHHHhcc----------------cchhhhHHHHHHhcCC-cchhhhhHHHHHHHh
Confidence 98744322222 2234555556666665432 234444444 445 777788899999988
Q ss_pred HhCCCCchHHHHHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHhCcCCChhHHHHhhhcCCChhHhhcccCCCCcChH
Q 001733 641 LTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCPTETIHITE 720 (1019)
Q Consensus 641 La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~~vr~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~LV~lL~~~~~~~~ 720 (1019)
+-..+.. +-...+ ..++++.++.++.+++--++..+.|.|+.++++....+....-. ...+..|+.-|.+. +.
T Consensus 391 Il~gp~~--~~Lt~i-V~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l-~~~l~~l~~gL~De---Pr 463 (859)
T KOG1241|consen 391 ILEGPEP--DKLTPI-VIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELL-QSKLSALLEGLNDE---PR 463 (859)
T ss_pred hhcCCch--hhhhHH-HhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhh-hHHHHHHHHHhhhC---ch
Confidence 8776654 222222 35899999999998888999999999999997655322221111 24566666666544 37
Q ss_pred HHHHHHHHHhccCC
Q 001733 721 KQAVSAKFLAKLPH 734 (1019)
Q Consensus 721 ~~~~A~~~L~nL~~ 734 (1019)
+...++|++-+|..
T Consensus 464 va~N~CWAf~~Lae 477 (859)
T KOG1241|consen 464 VASNVCWAFISLAE 477 (859)
T ss_pred HHHHHHHHHHHHHH
Confidence 88889999888863
No 81
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.01 E-value=0.0027 Score=74.17 Aligned_cols=268 Identities=13% Similarity=0.142 Sum_probs=148.3
Q ss_pred hhhHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHhCcCCC
Q 001733 612 DYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTLSPYLG 691 (1019)
Q Consensus 612 ~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~~vr~~A~~~L~~Ls~~~~ 691 (1019)
..++..++..|++ .++.++++|+..+..++.--+.+.+ -+.+...|. .|.+.|....+++.-..+.+++.+....+
T Consensus 798 pqi~stiL~rLnn-ksa~vRqqaadlis~la~Vlktc~e-e~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvig 873 (1172)
T KOG0213|consen 798 PQICSTILWRLNN-KSAKVRQQAADLISSLAKVLKTCGE-EKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVIG 873 (1172)
T ss_pred HHHHHHHHHHhcC-CChhHHHHHHHHHHHHHHHHHhccH-HHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhcc
Confidence 3466777888999 9999999999999988652211111 012333332 46688888899998888888877764322
Q ss_pred hhHHHHhhhcCCChhHhhcccCCCCcChHHHHHHHHHHhccCCCChhhHHHHHhCCChHHHHHHHHhhhccCCCccchhh
Q 001733 692 HTLVERLCKTRGQPENLIQCPTETIHITEKQAVSAKFLAKLPHQNLTLNLALSARNVVPTILQTINLIQRSGTRTSRYAS 771 (1019)
Q Consensus 692 ~~~~~~l~~~~g~i~~LV~lL~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~ 771 (1019)
.... .....+.+|.|..+|++.. ..++.....+++.++...++. .+...
T Consensus 874 m~km--~pPi~dllPrltPILknrh--eKVqen~IdLvg~IadrgpE~---------------------------v~aRE 922 (1172)
T KOG0213|consen 874 MTKM--TPPIKDLLPRLTPILKNRH--EKVQENCIDLVGTIADRGPEY---------------------------VSARE 922 (1172)
T ss_pred cccc--CCChhhhcccchHhhhhhH--HHHHHHHHHHHHHHHhcCccc---------------------------CCHHH
Confidence 2111 1111367888888887664 466666666666655432221 00112
Q ss_pred hHHHHHHHHHHHHhcCCCchhHHHHHHhCCchHHHHHHHhcCCcHHHHHHHHHHHhhhcccCCcCCCCCCcCCccccccc
Q 001733 772 AYLEGLIGILVRFTTTLYEPQILFLARTHNFTSVFTELLMKTSCDEVQKLAAIGLENLSSESINLSKPPQIKSKKFMKFF 851 (1019)
Q Consensus 772 ~~~e~a~~aL~~lt~~~~~~~~~~~~~~~g~i~~Lv~LL~~~~~~~vk~~AA~aL~nLs~~~~~l~~~~~~~~~~~~~~~ 851 (1019)
|+ |++. -|+++|+. -..++|+.|...++.++.-- ++
T Consensus 923 WM---------RIcf------------------eLlelLka-hkK~iRRaa~nTfG~IakaI---------GP------- 958 (1172)
T KOG0213|consen 923 WM---------RICF------------------ELLELLKA-HKKEIRRAAVNTFGYIAKAI---------GP------- 958 (1172)
T ss_pred HH---------HHHH------------------HHHHHHHH-HHHHHHHHHHhhhhHHHHhc---------CH-------
Confidence 21 2222 26677777 57788888887777775321 00
Q ss_pred ccCcccccCCCCCCCCCCCcccCCccccCccchhhhccchHHHHhhhccCchhhHHHHHHHHHhhhccCcchhhHHHHHH
Q 001733 852 SLPKSLSVGSSKKKSVSLCPVHRGACSSQNTFCLIDAKAVDRLLACLYHENVEVVEAALSALCTLLDEKVDVDKSVSMLS 931 (1019)
Q Consensus 852 ~~~~~~~~~~~~~~~~~~c~v~~~~cs~~~~~~Lv~~gai~~Lv~lL~~~d~~v~~~Al~AL~~L~~d~~~~~~~~~~i~ 931 (1019)
...+..|++=|+.++-.-+.-..-|++..+.. +.
T Consensus 959 ------------------------------------qdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~-------c~--- 992 (1172)
T KOG0213|consen 959 ------------------------------------QDVLATLLNNLKVQERQNRVCTTVAIAIVAET-------CG--- 992 (1172)
T ss_pred ------------------------------------HHHHHHHHhcchHHHHHhchhhhhhhhhhhhh-------cC---
Confidence 12344444444444333222222222222210 00
Q ss_pred hccchHHHHHHHhhcChhhHHHHHHHHHHHHHhhCCccccccccccccchHHHHHHhhcCCchhhHHHHHHHHHhcc
Q 001733 932 EVNAIQHVLNVVKEHRQEVLQQKSFWMIERFLVKGGNKQASDISQDRLLPATLVSAFHHGDVNTRQMAEKILRHLNK 1008 (1019)
Q Consensus 932 ~~~~i~~l~~lL~~~~~~~~~~~A~~aL~~i~~~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~~L~~L~~ 1008 (1019)
=...+|.|+.--. .++-.+|.-.+.++.-+|.-- .++...|... .. ..|.++|-+.|..-|+.|..++.||+.
T Consensus 993 pFtVLPalmneYr-tPe~nVQnGVLkalsf~Feyi-gemskdYiya-v~-PlleDAlmDrD~vhRqta~~~I~Hl~L 1065 (1172)
T KOG0213|consen 993 PFTVLPALMNEYR-TPEANVQNGVLKALSFMFEYI-GEMSKDYIYA-VT-PLLEDALMDRDLVHRQTAMNVIKHLAL 1065 (1172)
T ss_pred chhhhHHHHhhcc-CchhHHHHhHHHHHHHHHHHH-HHHhhhHHHH-hh-HHHHHhhccccHHHHHHHHHHHHHHhc
Confidence 0122344444333 444555655555555555431 2233333222 22 358889999999999999999999875
No 82
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.99 E-value=3.5e-06 Score=86.76 Aligned_cols=68 Identities=16% Similarity=0.240 Sum_probs=59.3
Q ss_pred CCCccccccCcccCCCceecCCCccccHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCccCHhHHHHHHHHHH
Q 001733 230 LYETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVALKTTIEEWKD 302 (1019)
Q Consensus 230 ~~~~~~Cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~~~~l~pn~~Lr~~I~~w~~ 302 (1019)
+-.-++|-||.+.++-|++.+||||||.-||.+++.. ++.||.|+.+....-++.|..++..++.+..
T Consensus 22 LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~-----qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~ 89 (391)
T COG5432 22 LDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT-----QPFCPVCREDPCESRLRGSSGSREINESHAR 89 (391)
T ss_pred chhHHHhhhhhheeecceecccccchhHHHHHHHhcC-----CCCCccccccHHhhhcccchhHHHHHHhhhh
Confidence 4456899999999999999999999999999999987 6789999999888888888777777777653
No 83
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.98 E-value=0.0033 Score=71.54 Aligned_cols=329 Identities=17% Similarity=0.149 Sum_probs=204.6
Q ss_pred HHHHHHhcccccchHHHhcCChHHHHHHhhcCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHhcCC--ChhH
Q 001733 331 DLQTVCQRKQYNKVQVRNVGVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSS--HRPV 408 (1019)
Q Consensus 331 ~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL~~~--~~~~ 408 (1019)
.|-.+-++.+.-|.-+.-.-..+.+..++-+++.+++..+..+++.+. .+.+.-..+.+.+.--.++..|..+ +...
T Consensus 6 ~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i-~d~~~l~~~~~l~id~~ii~SL~~~~~~~~E 84 (371)
T PF14664_consen 6 DLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLI-SDEESLQILLKLHIDIFIIRSLDRDNKNDVE 84 (371)
T ss_pred HHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH-cCHHHHHHHHHcCCchhhHhhhcccCCChHH
Confidence 344455555644433333333444554455556999999999999987 6777777777777666777788654 3467
Q ss_pred HHHHHHHHHHhccChhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHHHhcCChHHHHHHhcc
Q 001733 409 RHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNE 488 (1019)
Q Consensus 409 r~~Aa~~L~~Ls~~~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~lL~~ 488 (1019)
|+.|...+..+...+.....+ ..|.+..||.+.. ..+...+..|.++|..++.. |-..++++||+.+|++.+.+
T Consensus 85 R~QALkliR~~l~~~~~~~~~--~~~vvralvaiae--~~~D~lr~~cletL~El~l~--~P~lv~~~gG~~~L~~~l~d 158 (371)
T PF14664_consen 85 REQALKLIRAFLEIKKGPKEI--PRGVVRALVAIAE--HEDDRLRRICLETLCELALL--NPELVAECGGIRVLLRALID 158 (371)
T ss_pred HHHHHHHHHHHHHhcCCcccC--CHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHhh--CHHHHHHcCCHHHHHHHHHh
Confidence 999999999987765555555 3688999999985 34556889999999999863 34567789999999999998
Q ss_pred CCHHHHHHHHHHHHHhccCcccccccccc-hHHHHHHHHhcC-------Ch--HHHHHHHHHHHHhhcCCcchHHHH--H
Q 001733 489 GSEEIQMEMASYLGEIVLGHDSKINVPGR-AASTLIRMVHSG-------NS--LTRRIAFKALMQISSHHPSCKILV--E 556 (1019)
Q Consensus 489 ~~~~~~~~aa~~L~~La~~~~~~~~i~~~-~i~~Lv~lL~~~-------~~--~~~~~A~~aL~~Ls~~~~~~~~l~--~ 556 (1019)
++.+..+..+.++..+-.+|..|..+..+ -+..++.-..+. +. +--..+..++..+-++=+.--.+- +
T Consensus 159 ~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~ 238 (371)
T PF14664_consen 159 GSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMND 238 (371)
T ss_pred ccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCC
Confidence 87778888889999999999999877654 344444333221 22 233344445544433322211111 1
Q ss_pred cCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCC-cccccccccCcccchhhhHHHHHHHH---cC--------
Q 001733 557 AGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLE-HHSLQVNSHGHTMVSDYVVYNIIYML---KN-------- 624 (1019)
Q Consensus 557 ~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~-~~~~~v~~~g~~l~~~~~i~~Ll~LL---~~-------- 624 (1019)
..++..|++.|..+. .++++....+|..+-.-... |..-. ..|..+...+....--.+- ..
T Consensus 239 ~~~lksLv~~L~~p~-----~~ir~~Ildll~dllrik~p~w~~~~--~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~ 311 (371)
T PF14664_consen 239 FRGLKSLVDSLRLPN-----PEIRKAILDLLFDLLRIKPPSWTESF--LAGRRLTTYGRFQDTWNLSSGFAEAKSILPHR 311 (371)
T ss_pred chHHHHHHHHHcCCC-----HHHHHHHHHHHHHHHCCCCCCcccch--hhcccccccccccchhhhcccccccccccCcc
Confidence 246888888887653 46888888888777653322 21100 0111122111110000000 00
Q ss_pred --CCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCC-CHHHHHHHHHHHHHhC
Q 001733 625 --STPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNP-HDELAVAAIKLLTTLS 687 (1019)
Q Consensus 625 --~~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~-~~~vr~~A~~~L~~Ls 687 (1019)
....-+..+.+ -+.-.+.++|.++.|+++..+. ++.+...|.-+|..+-
T Consensus 312 ~~~~~~l~~~y~a--------------Lll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL 363 (371)
T PF14664_consen 312 SSKRPNLVNHYLA--------------LLLAILIEAGLLEALVELIESSEDSSLSRKATLLLGELL 363 (371)
T ss_pred ccccccHHHHHHH--------------HHHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 00011111111 1123556789999999999987 7889999988887554
No 84
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=0.003 Score=74.91 Aligned_cols=277 Identities=16% Similarity=0.196 Sum_probs=175.3
Q ss_pred HHHHHHHHHHHHHhcccccchHHHhcCChHHHHHHhhcCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHhcC
Q 001733 324 MVLEAIKDLQTVCQRKQYNKVQVRNVGVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSS 403 (1019)
Q Consensus 324 ~~~~Al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL~~ 403 (1019)
.+.-|+..|..++.. +.+ ....|-+.++|+..++.+|.+|+.++..+-...++.-+.+ ++....+|.+
T Consensus 123 vVglAL~alg~i~s~-----Ema--rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f-----~~~~~~lL~e 190 (866)
T KOG1062|consen 123 VVGLALCALGNICSP-----EMA--RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHF-----VIAFRKLLCE 190 (866)
T ss_pred ehHHHHHHhhccCCH-----HHh--HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHh-----hHHHHHHHhh
Confidence 345566666554432 122 1246777889999999999999998888766665554443 6677788888
Q ss_pred CChhHHHHHHHHHHHhccC-hhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCC---CC-----chHHHH
Q 001733 404 SHRPVRHESLLLLLELSST-RSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERN---PD-----NIKCMA 474 (1019)
Q Consensus 404 ~~~~~r~~Aa~~L~~Ls~~-~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~---~~-----n~~~i~ 474 (1019)
.+..+-..++..+.+++.. ++..... ...++.||..|+ ++... ++ ...-+.
T Consensus 191 k~hGVL~~~l~l~~e~c~~~~~~l~~f---r~l~~~lV~iLk-----------------~l~~~~yspeydv~gi~dPFL 250 (866)
T KOG1062|consen 191 KHHGVLIAGLHLITELCKISPDALSYF---RDLVPSLVKILK-----------------QLTNSGYSPEYDVHGISDPFL 250 (866)
T ss_pred cCCceeeeHHHHHHHHHhcCHHHHHHH---HHHHHHHHHHHH-----------------HHhcCCCCCccCccCCCchHH
Confidence 8888888888888888774 3322222 235566666654 22110 00 001111
Q ss_pred hcCChHHHHHHhccCCHHHHHHHHHHHHHhccCcccccccccch----HHHHHHHHhcCChHHHHHHHHHHHHhhcCCcc
Q 001733 475 ENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDSKINVPGRA----ASTLIRMVHSGNSLTRRIAFKALMQISSHHPS 550 (1019)
Q Consensus 475 ~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~i~~~~----i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~ 550 (1019)
+-- +=.++++|..++++..+.+-.+|+.++.+.+.-..++... |..+..+. .+..++..|+.+|...-.++++
T Consensus 251 Qi~-iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~--~~~~LrvlainiLgkFL~n~d~ 327 (866)
T KOG1062|consen 251 QIR-ILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIR--SNSGLRVLAINILGKFLLNRDN 327 (866)
T ss_pred HHH-HHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhcc--CCchHHHHHHHHHHHHhcCCcc
Confidence 111 1134566778889999999999999998766555555433 23333322 4677899999999887766543
Q ss_pred -hHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCcccccccccCcccchhhhHHHHHHHHcCCCCHH
Q 001733 551 -CKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDE 629 (1019)
Q Consensus 551 -~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~ 629 (1019)
.+. =++..|...+... |.-++++= ..++++|+. +++.
T Consensus 328 NirY----vaLn~L~r~V~~d-----~~avqrHr--------------------------------~tIleCL~D-pD~S 365 (866)
T KOG1062|consen 328 NIRY----VALNMLLRVVQQD-----PTAVQRHR--------------------------------STILECLKD-PDVS 365 (866)
T ss_pred ceee----eehhhHHhhhcCC-----cHHHHHHH--------------------------------HHHHHHhcC-CcHH
Confidence 222 2344454444322 22222221 245667888 9999
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHhC
Q 001733 630 LNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTLS 687 (1019)
Q Consensus 630 v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~~vr~~A~~~L~~Ls 687 (1019)
+|..|.+.++.|.... +++.. ++.|+.+|...+++.+..++.-+..++
T Consensus 366 IkrralELs~~lvn~~----Nv~~m------v~eLl~fL~~~d~~~k~~~as~I~~la 413 (866)
T KOG1062|consen 366 IKRRALELSYALVNES----NVRVM------VKELLEFLESSDEDFKADIASKIAELA 413 (866)
T ss_pred HHHHHHHHHHHHhccc----cHHHH------HHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 9999999999998744 33333 346889999999999988888777777
No 85
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=0.0043 Score=73.27 Aligned_cols=431 Identities=14% Similarity=0.138 Sum_probs=223.4
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHhccChhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHHHh
Q 001733 396 ILIKLLSSSHRPVRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAE 475 (1019)
Q Consensus 396 ~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~ 475 (1019)
-|..+|.+.....+..|..-|..+-....+. ....|..|+.. .+.+.++++-.---|..-+..+.|-..+
T Consensus 39 dL~~lLdSnkd~~KleAmKRIia~iA~G~dv------S~~Fp~VVKNV--askn~EVKkLVyvYLlrYAEeqpdLALL-- 108 (968)
T KOG1060|consen 39 DLKQLLDSNKDSLKLEAMKRIIALIAKGKDV------SLLFPAVVKNV--ASKNIEVKKLVYVYLLRYAEEQPDLALL-- 108 (968)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhcCCcH------HHHHHHHHHHh--hccCHHHHHHHHHHHHHHhhcCCCceee--
Confidence 3556666655555566665444443332221 23345566655 3567777776666665555544443332
Q ss_pred cCChHHHHHHhccCCHHHHHHHHHHHHHhccCcccccccccc-hHHHHHHHHhcCChHHHHHHHHHHHHhhcCCcc-hHH
Q 001733 476 NGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDSKINVPGR-AASTLIRMVHSGNSLTRRIAFKALMQISSHHPS-CKI 553 (1019)
Q Consensus 476 ~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~i~~~-~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~-~~~ 553 (1019)
-|..+-+-|.+.++.++.-|+++|..+= .-+... .+-.+-+...+.++-+|..|+.|+-.|=+-+.+ +..
T Consensus 109 --SIntfQk~L~DpN~LiRasALRvlSsIR------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~q 180 (968)
T KOG1060|consen 109 --SINTFQKALKDPNQLIRASALRVLSSIR------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQ 180 (968)
T ss_pred --eHHHHHhhhcCCcHHHHHHHHHHHHhcc------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHH
Confidence 3567778899999999998888887441 111112 122333556667899999999999999777665 333
Q ss_pred HHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCcccccccccCcccchhhhHHHHHHHHcCCCCHHHHHH
Q 001733 554 LVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVH 633 (1019)
Q Consensus 554 l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~ 633 (1019)
+. +.+-.||.... | -+.-.|+.+...+| +++-.. -.+--.+|..+|-. -+.--|..
T Consensus 181 L~-----e~I~~LLaD~s----p-lVvgsAv~AF~evC---PerldL----------IHknyrklC~ll~d-vdeWgQvv 236 (968)
T KOG1060|consen 181 LE-----EVIKKLLADRS----P-LVVGSAVMAFEEVC---PERLDL----------IHKNYRKLCRLLPD-VDEWGQVV 236 (968)
T ss_pred HH-----HHHHHHhcCCC----C-cchhHHHHHHHHhc---hhHHHH----------hhHHHHHHHhhccc-hhhhhHHH
Confidence 32 23333344332 1 33334443333332 222111 02223455555554 44555555
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHcC---------------------Ch----HHHHHhhcCCCHHHHHHHHHHHHHhCc
Q 001733 634 LIRILQCLTKSPKPMATIVSVIKETE---------------------AS----YSLLEVINNPHDELAVAAIKLLTTLSP 688 (1019)
Q Consensus 634 a~~aL~~La~~~~~~~~i~~~i~~~g---------------------~i----~~Lv~LL~~~~~~vr~~A~~~L~~Ls~ 688 (1019)
++..|..-|++.-..+.......+.. -+ +..-.||.+.++.+..+++.+++.|+.
T Consensus 237 lI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP 316 (968)
T KOG1060|consen 237 LINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAP 316 (968)
T ss_pred HHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCC
Confidence 66666555543211111111111111 11 122357788899999999999999996
Q ss_pred CCChhHHHHhhhcCCChhHhhcccCCCCcChHHHHHHHHHHhccCCCChhhHHHHHhCCChHHHHHHHHhhhccCCCccc
Q 001733 689 YLGHTLVERLCKTRGQPENLIQCPTETIHITEKQAVSAKFLAKLPHQNLTLNLALSARNVVPTILQTINLIQRSGTRTSR 768 (1019)
Q Consensus 689 ~~~~~~~~~l~~~~g~i~~LV~lL~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~ 768 (1019)
.. + . .+.+++||++|.++. ++|...+..++-+....+.+ . .|.+-++.-- +. ++
T Consensus 317 ~~--~----~---~~i~kaLvrLLrs~~---~vqyvvL~nIa~~s~~~~~l----F----~P~lKsFfv~--ss----Dp 370 (968)
T KOG1060|consen 317 KN--Q----V---TKIAKALVRLLRSNR---EVQYVVLQNIATISIKRPTL----F----EPHLKSFFVR--SS----DP 370 (968)
T ss_pred HH--H----H---HHHHHHHHHHHhcCC---cchhhhHHHHHHHHhcchhh----h----hhhhhceEee--cC----CH
Confidence 32 1 1 245789999998876 55555555444444322221 1 1222222210 00 11
Q ss_pred hhhhHHHHHHHHHHHHhcCCCchhHHHHHHhCCchHHHHHHHhcCCcHHHHHHHHHHHhhhcccCCcCCCCCCcCCcccc
Q 001733 769 YASAYLEGLIGILVRFTTTLYEPQILFLARTHNFTSVFTELLMKTSCDEVQKLAAIGLENLSSESINLSKPPQIKSKKFM 848 (1019)
Q Consensus 769 ~~~~~~e~a~~aL~~lt~~~~~~~~~~~~~~~g~i~~Lv~LL~~~~~~~vk~~AA~aL~nLs~~~~~l~~~~~~~~~~~~ 848 (1019)
..+.-.=..+|.+++. ..+... +++-|-...++ .+..+-..|..||+..+.... .
T Consensus 371 --~~vk~lKleiLs~La~----esni~~-----ILrE~q~YI~s-~d~~faa~aV~AiGrCA~~~~---s---------- 425 (968)
T KOG1060|consen 371 --TQVKILKLEILSNLAN----ESNISE-----ILRELQTYIKS-SDRSFAAAAVKAIGRCASRIG---S---------- 425 (968)
T ss_pred --HHHHHHHHHHHHHHhh----hccHHH-----HHHHHHHHHhc-CchhHHHHHHHHHHHHHHhhC---c----------
Confidence 1111112334444442 111111 12233333445 344443344444444332220 0
Q ss_pred cccccCcccccCCCCCCCCCCCcccCCccccCccchhhhccchHHHHhhhccCchhhHHHHHHHHHhhhccCcchhhHHH
Q 001733 849 KFFSLPKSLSVGSSKKKSVSLCPVHRGACSSQNTFCLIDAKAVDRLLACLYHENVEVVEAALSALCTLLDEKVDVDKSVS 928 (1019)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~c~v~~~~cs~~~~~~Lv~~gai~~Lv~lL~~~d~~v~~~Al~AL~~L~~d~~~~~~~~~ 928 (1019)
+..-++..||++|++.|..|+..|+..+-.|++.+. . +...
T Consensus 426 -------------------------------------v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p-~-~h~~ 466 (968)
T KOG1060|consen 426 -------------------------------------VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDP-A-EHLE 466 (968)
T ss_pred -------------------------------------hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhCh-H-HHHH
Confidence 112358999999999999999999999999997653 1 1111
Q ss_pred HHHhccchHHHHHHHhhcChhhHHHHHHHHHHHHHh
Q 001733 929 MLSEVNAIQHVLNVVKEHRQEVLQQKSFWMIERFLV 964 (1019)
Q Consensus 929 ~i~~~~~i~~l~~lL~~~~~~~~~~~A~~aL~~i~~ 964 (1019)
-+..+.+++....-+..+---+|++..++.
T Consensus 467 ------ii~~La~lldti~vp~ARA~IiWLige~~e 496 (968)
T KOG1060|consen 467 ------ILFQLARLLDTILVPAARAGIIWLIGEYCE 496 (968)
T ss_pred ------HHHHHHHHhhhhhhhhhhceeeeeehhhhh
Confidence 234455566422235555556677766544
No 86
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=97.93 E-value=5e-06 Score=63.64 Aligned_cols=40 Identities=25% Similarity=0.675 Sum_probs=33.7
Q ss_pred ccccCcccCC---CceecCCCccccHHHHHHHHhhhccCCCCCCCCCC
Q 001733 235 YCPLTKEIMD---DPVTIESGVTYERNAITAWFEKFETSGDIFCPTTG 279 (1019)
Q Consensus 235 ~Cpi~~~~m~---dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~ 279 (1019)
.||||.+-|. .++.++|||.|.++||.+|+.. +.+||.|+
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-----~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-----NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-----SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-----CCcCCccC
Confidence 4999999994 4667799999999999999998 35899985
No 87
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=6.5e-06 Score=93.19 Aligned_cols=69 Identities=29% Similarity=0.506 Sum_probs=58.0
Q ss_pred CCCCccccccCcccCCCceecCCCccccHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCccCHhHHHHHHHHHHHc
Q 001733 229 PLYETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVALKTTIEEWKDRN 304 (1019)
Q Consensus 229 ~~~~~~~Cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~~~~l~pn~~Lr~~I~~w~~~~ 304 (1019)
...+++.||||.+.|++|++++|||+|||.||..||.. ...||.|+. ....+.+|..+.++++.....+
T Consensus 9 ~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~~-----~~~Cp~cr~--~~~~~~~n~~l~~~~~~~~~~~ 77 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWEG-----PLSCPVCRP--PSRNLRPNVLLANLVERLRQLR 77 (386)
T ss_pred hccccccChhhHHHhhcCccccccchHhHHHHHHhcCC-----CcCCcccCC--chhccCccHHHHHHHHHHHhcC
Confidence 35678999999999999999999999999999999982 367999995 2337779999999888877554
No 88
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.88 E-value=0.0003 Score=77.70 Aligned_cols=271 Identities=15% Similarity=0.102 Sum_probs=176.8
Q ss_pred HHHHHHHcCChHHHHHhhcCCCH--HHHHHHHHHHHHhCcCCChhHHHHhhhcCCChhHhhcccCCCCcChHHHHHHHHH
Q 001733 651 IVSVIKETEASYSLLEVINNPHD--ELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCPTETIHITEKQAVSAKF 728 (1019)
Q Consensus 651 i~~~i~~~g~i~~Lv~LL~~~~~--~vr~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~LV~lL~~~~~~~~~~~~A~~~ 728 (1019)
++..|+..|++..|++++..++. .+|..|.++|-.+..... .+.+. ..++..++.+-+... ..+.+...+++
T Consensus 172 LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN---~d~va--~~~~~~Il~lAK~~e-~~e~aR~~~~i 245 (832)
T KOG3678|consen 172 LCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVAEN---RDRVA--RIGLGVILNLAKERE-PVELARSVAGI 245 (832)
T ss_pred hhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhh---hhHHh--hccchhhhhhhhhcC-cHHHHHHHHHH
Confidence 45678889999999999999986 469999999987763222 23333 234666666666666 36788889999
Q ss_pred HhccCCCChhhHHHHHhCCChHHHHHHHHhhhccCCCccchhhhHHHHHHHHHHHHhcCCCchhHHHHHHhCCchHHHHH
Q 001733 729 LAKLPHQNLTLNLALSARNVVPTILQTINLIQRSGTRTSRYASAYLEGLIGILVRFTTTLYEPQILFLARTHNFTSVFTE 808 (1019)
Q Consensus 729 L~nL~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~lt~~~~~~~~~~~~~~~g~i~~Lv~ 808 (1019)
|.++-.++.+..+.|+++|++..++-..+ +....++..++-+|.+++-.. ....++.+++..+-.-|.-
T Consensus 246 l~~mFKHSeet~~~Lvaa~~lD~vl~~~r----------Rt~P~lLRH~ALAL~N~~L~~-~~a~qrrmveKr~~EWLF~ 314 (832)
T KOG3678|consen 246 LEHMFKHSEETCQRLVAAGGLDAVLYWCR----------RTDPALLRHCALALGNCALHG-GQAVQRRMVEKRAAEWLFP 314 (832)
T ss_pred HHHHhhhhHHHHHHHHhhcccchheeecc----------cCCHHHHHHHHHHhhhhhhhc-hhHHHHHHHHhhhhhhhhh
Confidence 99998888888899999999998876543 234667777778888776432 6778888888887777777
Q ss_pred HHhcCCcHHHHHHHHHHHhhhcccCCcCCCCCCcCCcccccccccCcccccCCCCCCCCCCCcccCCccccCccchhh--
Q 001733 809 LLMKTSCDEVQKLAAIGLENLSSESINLSKPPQIKSKKFMKFFSLPKSLSVGSSKKKSVSLCPVHRGACSSQNTFCLI-- 886 (1019)
Q Consensus 809 LL~~~~~~~vk~~AA~aL~nLs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~v~~~~cs~~~~~~Lv-- 886 (1019)
|-.+ .++..|..|+.|.+-|+++.. ....+. +++-+.... |-+ ..|..--..+...-..
T Consensus 315 LA~s-kDel~R~~AClAV~vlat~KE-~E~~Vr--kS~TlaLVE-Plv--------------a~~DP~~FARD~hd~aQG 375 (832)
T KOG3678|consen 315 LAFS-KDELLRLHACLAVAVLATNKE-VEREVR--KSGTLALVE-PLV--------------ASLDPGRFARDAHDYAQG 375 (832)
T ss_pred hhcc-hHHHHHHHHHHHHhhhhhhhh-hhHHHh--hccchhhhh-hhh--------------hccCcchhhhhhhhhhcc
Confidence 7677 789999999999999987652 111110 000000000 000 0000000000000000
Q ss_pred -hccchHHHHhhhccCchhhHHHHHHHHHhhhccCcchhhHHHHHHhccchHHHHHHHhhcChhhHHHHHHHHH
Q 001733 887 -DAKAVDRLLACLYHENVEVVEAALSALCTLLDEKVDVDKSVSMLSEVNAIQHVLNVVKEHRQEVLQQKSFWMI 959 (1019)
Q Consensus 887 -~~gai~~Lv~lL~~~d~~v~~~Al~AL~~L~~d~~~~~~~~~~i~~~~~i~~l~~lL~~~~~~~~~~~A~~aL 959 (1019)
--.-+..|+-+|++.--+.+..++.=||-=+.-.. .+.-.+++.+-|+|+.|-++.. ++++....-|..+|
T Consensus 376 ~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIKs-~Q~K~kVFseIGAIQaLKevaS-S~d~vaakfAseAL 447 (832)
T KOG3678|consen 376 RGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAIKS-LQGKTKVFSEIGAIQALKEVAS-SPDEVAAKFASEAL 447 (832)
T ss_pred CChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHHHH-hccchhHHHHHHHHHHHHHHhc-CchHHHHHHHHHHH
Confidence 12247788999998888888777666654332111 2334678889999999988887 77766655566665
No 89
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=97.88 E-value=1.3e-05 Score=61.31 Aligned_cols=43 Identities=28% Similarity=0.655 Sum_probs=38.4
Q ss_pred ccccCcccCCCceecC-CCccccHHHHHHHHhhhccCCCCCCCCCCCC
Q 001733 235 YCPLTKEIMDDPVTIE-SGVTYERNAITAWFEKFETSGDIFCPTTGKK 281 (1019)
Q Consensus 235 ~Cpi~~~~m~dPv~~~-~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~ 281 (1019)
.||||.+.+.+|+.+. |||.|++.|+.+|+.. +...||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~----~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKS----GKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHh----CcCCCCCCCCc
Confidence 4999999999999886 9999999999999997 56789999875
No 90
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.88 E-value=0.0032 Score=71.67 Aligned_cols=260 Identities=14% Similarity=0.061 Sum_probs=179.1
Q ss_pred HHhhccCChhHHHHHHhcCCHHHHHHHhcCCChhHHHHHHHHHHHhccChhhhhhhhcccchHHHHHHhhhcCCCChHHH
Q 001733 374 LRQLVVEDDEGKEMIAETMDISILIKLLSSSHRPVRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAA 453 (1019)
Q Consensus 374 L~~La~~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~ 453 (1019)
|..+-+.++..|..+.-....+.+..++-+++.++|..+..+++++..+.+..+.+.. .+.=-.++.-|........-+
T Consensus 7 Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~-l~id~~ii~SL~~~~~~~~ER 85 (371)
T PF14664_consen 7 LVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLK-LHIDIFIIRSLDRDNKNDVER 85 (371)
T ss_pred HHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHH-cCCchhhHhhhcccCCChHHH
Confidence 3444445555555555444556666555555599999999999999999888887765 443334444454444455568
Q ss_pred HHHHHHHHHhcCCCCchHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhcc-Cccccccccc-chHHHHHHHHhcCCh
Q 001733 454 EIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVL-GHDSKINVPG-RAASTLIRMVHSGNS 531 (1019)
Q Consensus 454 ~~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~-~~~~~~~i~~-~~i~~Lv~lL~~~~~ 531 (1019)
+.|.+..+.+...+++...+ -.|.+..++.+..+.++..+..|..+|..++. +|+ .+.+ ||+..|++.+-+++.
T Consensus 86 ~QALkliR~~l~~~~~~~~~-~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~ 161 (371)
T PF14664_consen 86 EQALKLIRAFLEIKKGPKEI-PRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSF 161 (371)
T ss_pred HHHHHHHHHHHHhcCCcccC-CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccH
Confidence 89999999887654443332 45788899999998889999999999999997 453 3334 789999998888877
Q ss_pred HHHHHHHHHHHHhhcCCcchHHHHHcCcHHHHHHHHhhhc--cCCCCh--hHHHHHHHHHHHHHhcCCCcccccccccCc
Q 001733 532 LTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRI--IHNEPM--NSKEEAAAILANILESGLEHHSLQVNSHGH 607 (1019)
Q Consensus 532 ~~~~~A~~aL~~Ls~~~~~~~~l~~~G~v~~Lv~lL~~~~--~~~~~~--~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~ 607 (1019)
.+.+..+.++..+-.++..|+.+...--++.++.-..+.+ ...... ..-..+..++..+-++-.+--.+..+
T Consensus 162 ~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~---- 237 (371)
T PF14664_consen 162 SISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMN---- 237 (371)
T ss_pred hHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecC----
Confidence 7999999999999999888877765334555555444331 000111 12345555666666665443222111
Q ss_pred ccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCC
Q 001733 608 TMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPK 646 (1019)
Q Consensus 608 ~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~La~~~~ 646 (1019)
....+..|+..|.. +++.++...+..|+.+-.-+.
T Consensus 238 ---~~~~lksLv~~L~~-p~~~ir~~Ildll~dllrik~ 272 (371)
T PF14664_consen 238 ---DFRGLKSLVDSLRL-PNPEIRKAILDLLFDLLRIKP 272 (371)
T ss_pred ---CchHHHHHHHHHcC-CCHHHHHHHHHHHHHHHCCCC
Confidence 12578999999999 899999999999998876443
No 91
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=0.0085 Score=70.27 Aligned_cols=214 Identities=12% Similarity=0.186 Sum_probs=144.0
Q ss_pred HHHHHhhhcCCCChHHHHHHHHHHHHhc-CCCCchHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhcc-Cccccccc
Q 001733 437 LVLITFKFNWSIDVFAAEIADQILRNLE-RNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVL-GHDSKINV 514 (1019)
Q Consensus 437 ~~LV~lL~~~~~~~~~~~~A~~aL~nLs-~~~~n~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~-~~~~~~~i 514 (1019)
+-++.||+ +..|-+++.|..+|+.+. .+++..+ -.+|.|++-|.++++.++-.|+.+++.||. +|.+...+
T Consensus 147 ~Dv~tLL~--sskpYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L 219 (877)
T KOG1059|consen 147 DDVFTLLN--SSKPYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL 219 (877)
T ss_pred HHHHHHHh--cCchHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc
Confidence 45677774 567889999999999887 3444322 367999999999999999999999999998 78776655
Q ss_pred ccchHHHHHHHHhcC-ChHHHHHHHHHHHHhhcCCcchHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHH--HHH
Q 001733 515 PGRAASTLIRMVHSG-NSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILA--NIL 591 (1019)
Q Consensus 515 ~~~~i~~Lv~lL~~~-~~~~~~~A~~aL~~Ls~~~~~~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~--~L~ 591 (1019)
+ |.+.++|-.. +..+.-.-+....+|+--.+- .....+++|.+++.+.. ...+--.|..++. ++.
T Consensus 220 A----P~ffkllttSsNNWmLIKiiKLF~aLtplEPR----LgKKLieplt~li~sT~----AmSLlYECvNTVVa~s~s 287 (877)
T KOG1059|consen 220 A----PLFYKLLVTSSNNWVLIKLLKLFAALTPLEPR----LGKKLIEPITELMESTV----AMSLLYECVNTVVAVSMS 287 (877)
T ss_pred c----HHHHHHHhccCCCeehHHHHHHHhhccccCch----hhhhhhhHHHHHHHhhH----HHHHHHHHHHHheeehhc
Confidence 4 7788877654 344555556666666654432 12346889999887652 1222222222221 111
Q ss_pred hcCCCcccccccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCC
Q 001733 592 ESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNP 671 (1019)
Q Consensus 592 ~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~ 671 (1019)
.+..++ .-...-++.+|--++.. .++.++.-.+-++..+...... .+. .--..+++.|.+.
T Consensus 288 ~g~~d~----------~asiqLCvqKLr~fied-sDqNLKYlgLlam~KI~ktHp~---~Vq-----a~kdlIlrcL~Dk 348 (877)
T KOG1059|consen 288 SGMSDH----------SASIQLCVQKLRIFIED-SDQNLKYLGLLAMSKILKTHPK---AVQ-----AHKDLILRCLDDK 348 (877)
T ss_pred cCCCCc----------HHHHHHHHHHHhhhhhc-CCccHHHHHHHHHHHHhhhCHH---HHH-----HhHHHHHHHhccC
Confidence 111111 11223467777777777 8999999999999998864421 122 1234567899999
Q ss_pred CHHHHHHHHHHHHHhCc
Q 001733 672 HDELAVAAIKLLTTLSP 688 (1019)
Q Consensus 672 ~~~vr~~A~~~L~~Ls~ 688 (1019)
++.+|..|+.+|..|..
T Consensus 349 D~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 349 DESIRLRALDLLYGMVS 365 (877)
T ss_pred CchhHHHHHHHHHHHhh
Confidence 99999999999998874
No 92
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.86 E-value=0.0019 Score=74.31 Aligned_cols=212 Identities=13% Similarity=-0.028 Sum_probs=154.7
Q ss_pred ChHHHHHHhhcCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHhcCCChhHHHHHHHHHHHhccChhhhhhhh
Q 001733 351 VLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSSHRPVRHESLLLLLELSSTRSLCEKIG 430 (1019)
Q Consensus 351 ~i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~~~~~~~i~ 430 (1019)
++..|+..|.+.++.++..++.+|..+- ..++.+.|+.+|++.++.+|..++.++...
T Consensus 87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i~-----------~~~a~~~L~~~L~~~~p~vR~aal~al~~r----------- 144 (410)
T TIGR02270 87 DLRSVLAVLQAGPEGLCAGIQAALGWLG-----------GRQAEPWLEPLLAASEPPGRAIGLAALGAH----------- 144 (410)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcCC-----------chHHHHHHHHHhcCCChHHHHHHHHHHHhh-----------
Confidence 3889999999999999999999997663 456788899999999999998888776551
Q ss_pred cccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCccc
Q 001733 431 SIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDS 510 (1019)
Q Consensus 431 ~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~ 510 (1019)
.....+.|+.+|. ..++.++..|+.+|..+- ....++.|...+.+.++.++..++.+|..+..
T Consensus 145 -~~~~~~~L~~~L~--d~d~~Vra~A~raLG~l~----------~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~---- 207 (410)
T TIGR02270 145 -RHDPGPALEAALT--HEDALVRAAALRALGELP----------RRLSESTLRLYLRDSDPEVRFAALEAGLLAGS---- 207 (410)
T ss_pred -ccChHHHHHHHhc--CCCHHHHHHHHHHHHhhc----------cccchHHHHHHHcCCCHHHHHHHHHHHHHcCC----
Confidence 1345678888884 678999999999998653 45678889999999999999999999975532
Q ss_pred ccccccchHHHHHHHHhcCChHHHHHHHHHHHHhhcCCcchHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHH
Q 001733 511 KINVPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANI 590 (1019)
Q Consensus 511 ~~~i~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L 590 (1019)
..++.++..+...........+.. +..+...+ .+++.|..++... .+++.++.+|..+
T Consensus 208 -----~~A~~~l~~~~~~~g~~~~~~l~~-~lal~~~~---------~a~~~L~~ll~d~-------~vr~~a~~AlG~l 265 (410)
T TIGR02270 208 -----RLAWGVCRRFQVLEGGPHRQRLLV-LLAVAGGP---------DAQAWLRELLQAA-------ATRREALRAVGLV 265 (410)
T ss_pred -----HhHHHHHHHHHhccCccHHHHHHH-HHHhCCch---------hHHHHHHHHhcCh-------hhHHHHHHHHHHc
Confidence 235677777444433333333333 33333221 5688888877743 4778887777754
Q ss_pred HhcCCCcccccccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCC
Q 001733 591 LESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSP 645 (1019)
Q Consensus 591 ~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~La~~~ 645 (1019)
-. ...++.|+..+.. +.++..|..++..|+.-.
T Consensus 266 g~-------------------p~av~~L~~~l~d---~~~aR~A~eA~~~ItG~~ 298 (410)
T TIGR02270 266 GD-------------------VEAAPWCLEAMRE---PPWARLAGEAFSLITGMD 298 (410)
T ss_pred CC-------------------cchHHHHHHHhcC---cHHHHHHHHHHHHhhCCC
Confidence 22 4568888888865 459999999998887633
No 93
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.85 E-value=0.014 Score=68.53 Aligned_cols=254 Identities=13% Similarity=0.132 Sum_probs=169.3
Q ss_pred hHHHHHHhhcCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHhcCCChhHHHHHHHHHHHhcc-Chhhhhhhh
Q 001733 352 LPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSSHRPVRHESLLLLLELSS-TRSLCEKIG 430 (1019)
Q Consensus 352 i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~-~~~~~~~i~ 430 (1019)
-+-++.+|+++-+-+|.+|+..|..+....++. + .-+.|.|++-|..+|+.++..|+..+++|+. +|.+.-.+
T Consensus 146 a~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA---l--r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L- 219 (877)
T KOG1059|consen 146 ADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA---L--RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL- 219 (877)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh---H--hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc-
Confidence 345778899999999999999999876443332 2 2467999999999999999999999999997 45555444
Q ss_pred cccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHHHhcCChHHHHHHhccCC-HHHHHHHHHHHHHh--ccC
Q 001733 431 SIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGS-EEIQMEMASYLGEI--VLG 507 (1019)
Q Consensus 431 ~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~lL~~~~-~~~~~~aa~~L~~L--a~~ 507 (1019)
-|.+.++|- .+.+.-+.......+.+|+.... +++ .-.+|+|.+++.+.. ..+..+++.+.-.- ...
T Consensus 220 -----AP~ffkllt-tSsNNWmLIKiiKLF~aLtplEP---RLg-KKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g 289 (877)
T KOG1059|consen 220 -----APLFYKLLV-TSSNNWVLIKLLKLFAALTPLEP---RLG-KKLIEPITELMESTVAMSLLYECVNTVVAVSMSSG 289 (877)
T ss_pred -----cHHHHHHHh-ccCCCeehHHHHHHHhhccccCc---hhh-hhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccC
Confidence 367777775 35566677778888888875432 222 236799999998654 34455555544322 221
Q ss_pred cccccccccchHHHHHHHHhcCChHHHHHHHHHHHHhhcCCcchHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHH
Q 001733 508 HDSKINVPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAIL 587 (1019)
Q Consensus 508 ~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L 587 (1019)
.....+-..-.+..|=.++.+.++.++-.++-++..+...++. .+.+ --+.++..|... ...++-.|...|
T Consensus 290 ~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~---~Vqa-~kdlIlrcL~Dk-----D~SIRlrALdLl 360 (877)
T KOG1059|consen 290 MSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPK---AVQA-HKDLILRCLDDK-----DESIRLRALDLL 360 (877)
T ss_pred CCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHH---HHHH-hHHHHHHHhccC-----CchhHHHHHHHH
Confidence 1122222223566777777788899999999999999876653 1111 012344555533 258899999999
Q ss_pred HHHHhcCCCcccccccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCC
Q 001733 588 ANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSP 645 (1019)
Q Consensus 588 ~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~La~~~ 645 (1019)
..+..... + ..++..|+..+-.+.....+...+.-+..+|+.+
T Consensus 361 ~gmVskkN----l-----------~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~s 403 (877)
T KOG1059|consen 361 YGMVSKKN----L-----------MEIVKTLMKHVEKAEGTNYRDELLTRIISICSQS 403 (877)
T ss_pred HHHhhhhh----H-----------HHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhh
Confidence 88876532 1 3466777766554245577777777777777644
No 94
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.85 E-value=0.0035 Score=69.49 Aligned_cols=308 Identities=12% Similarity=0.048 Sum_probs=195.3
Q ss_pred CCHHHHHHHHHHHHHHHhcccccchHHHh------cCChHHHHHHhhcCCHHHHHHHHHHHHhhccCChhHHHHHHhcC-
Q 001733 320 GSDRMVLEAIKDLQTVCQRKQYNKVQVRN------VGVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETM- 392 (1019)
Q Consensus 320 ~~~~~~~~Al~~L~~l~~~~~~~r~~i~~------~g~i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g- 392 (1019)
..++.+...+--+-++-.++...-..+.. .-..+..+++|...|.-..+.+...+..++.-.... ....+-.
T Consensus 78 ~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~-~~~~e~~~ 156 (442)
T KOG2759|consen 78 DKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACFGNCK-MELSELDV 156 (442)
T ss_pred hhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHhcccc-ccchHHHH
Confidence 34455555555555555544432222111 223678889998888888887777777776322111 1110000
Q ss_pred CHHHHHHHhcC-CChhHHHHHHHHHHHhccChhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchH
Q 001733 393 DISILIKLLSS-SHRPVRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIK 471 (1019)
Q Consensus 393 ~i~~Lv~lL~~-~~~~~r~~Aa~~L~~Ls~~~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~ 471 (1019)
....|...+.+ .+++....|+.+|..+...++.|..+.. ..++..|+..+.+...+-..+-...-++|-|..++....
T Consensus 157 ~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~-adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae 235 (442)
T KOG2759|consen 157 YKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVI-ADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAE 235 (442)
T ss_pred HHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeee-cCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHH
Confidence 12334455555 5667888999999999999999999876 778888888885456678889999999999999998888
Q ss_pred HHHhcCChHHHHHHhccC-CHHHHHHHHHHHHHhccCcc---ccc----ccccchHHHHHHHHhcC---ChH-------H
Q 001733 472 CMAENGLLEPLMHHLNEG-SEEIQMEMASYLGEIVLGHD---SKI----NVPGRAASTLIRMVHSG---NSL-------T 533 (1019)
Q Consensus 472 ~i~~~G~i~~Lv~lL~~~-~~~~~~~aa~~L~~La~~~~---~~~----~i~~~~i~~Lv~lL~~~---~~~-------~ 533 (1019)
.+...+.|+.|.+++++. .+.+..-++.++.|+....+ .+. .+..+.+++-++.|... +++ +
T Consensus 236 ~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L 315 (442)
T KOG2759|consen 236 KLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFL 315 (442)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHH
Confidence 887789999999999854 46788889999999987553 222 23334577777777653 222 2
Q ss_pred HHHHHHHHHHhhcCCcc------------------------hHHHHH--cCcHHHHHHHHhhhccCCCChhHHHHHHHHH
Q 001733 534 RRIAFKALMQISSHHPS------------------------CKILVE--AGIVQVMAEEMFIRIIHNEPMNSKEEAAAIL 587 (1019)
Q Consensus 534 ~~~A~~aL~~Ls~~~~~------------------------~~~l~~--~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L 587 (1019)
++.--.-...|++.++- ...+-+ .-.+..|+.+|.... .| .+-..|+-=+
T Consensus 316 ~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~---Dp-~iL~VAc~DI 391 (442)
T KOG2759|consen 316 TEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSN---DP-IILCVACHDI 391 (442)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCC---CC-ceeehhhhhH
Confidence 22222333344443221 222222 233666777766432 23 2223333334
Q ss_pred HHHHhcCCCcccccccccC-cccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHHhC
Q 001733 588 ANILESGLEHHSLQVNSHG-HTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTK 643 (1019)
Q Consensus 588 ~~L~~~~~~~~~~~v~~~g-~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~La~ 643 (1019)
......- |.| ..+..-|+=..++.||++ ++|.++.+|+.|+..|-.
T Consensus 392 ge~Vr~y---------P~gk~vv~k~ggKe~vM~Llnh-~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 392 GEYVRHY---------PEGKAVVEKYGGKERVMNLLNH-EDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHHHHhC---------chHhHHHHHhchHHHHHHHhcC-CCchHHHHHHHHHHHHHh
Confidence 4444432 233 234455677888999999 999999999999877643
No 95
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.84 E-value=2.4e-05 Score=58.85 Aligned_cols=40 Identities=28% Similarity=0.176 Sum_probs=37.8
Q ss_pred chhHHHHHHhCCchHHHHHHHhcCCcHHHHHHHHHHHhhhc
Q 001733 790 EPQILFLARTHNFTSVFTELLMKTSCDEVQKLAAIGLENLS 830 (1019)
Q Consensus 790 ~~~~~~~~~~~g~i~~Lv~LL~~~~~~~vk~~AA~aL~nLs 830 (1019)
+++.++.+.++|++|.|+++|++ +++.+++.|+|+|+||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~-~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKS-PDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTS-SSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcC-CCHHHHHHHHHHHHHHh
Confidence 47788999999999999999998 99999999999999997
No 96
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=1.7e-05 Score=82.86 Aligned_cols=53 Identities=21% Similarity=0.349 Sum_probs=46.5
Q ss_pred CCCccccccCcccCCCceecCCCccccHHHHHHHHhhhccCCCCCCCCCCCCCCCCCC
Q 001733 230 LYETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGL 287 (1019)
Q Consensus 230 ~~~~~~Cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~~~~l 287 (1019)
.+..+.|-+|++-+.||--.||||.||=+||.+|+.+ ..-||.|++.+++..+
T Consensus 236 ~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e-----k~eCPlCR~~~~pskv 288 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE-----KAECPLCREKFQPSKV 288 (293)
T ss_pred CCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc-----ccCCCcccccCCCcce
Confidence 3456999999999999999999999999999999998 3459999998876553
No 97
>PHA02926 zinc finger-like protein; Provisional
Probab=97.82 E-value=1.6e-05 Score=79.99 Aligned_cols=54 Identities=13% Similarity=0.234 Sum_probs=43.2
Q ss_pred CCCccccccCcccCCC---------ceecCCCccccHHHHHHHHhhhc-cCCCCCCCCCCCCCC
Q 001733 230 LYETFYCPLTKEIMDD---------PVTIESGVTYERNAITAWFEKFE-TSGDIFCPTTGKKLM 283 (1019)
Q Consensus 230 ~~~~~~Cpi~~~~m~d---------Pv~~~~g~t~~r~~I~~~~~~~~-~~~~~~cP~~~~~l~ 283 (1019)
..++..|+||.|..-+ +++.+|||+||..||.+|.+... .+....||.|++.+.
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 5678999999998643 57779999999999999998522 233567999999765
No 98
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.73 E-value=0.0023 Score=75.08 Aligned_cols=283 Identities=13% Similarity=0.059 Sum_probs=172.6
Q ss_pred HHHHHHHHhcccccchHHHhcCChHHHHHHh----------hcCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHH
Q 001733 329 IKDLQTVCQRKQYNKVQVRNVGVLPLLTKLL----------EYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILI 398 (1019)
Q Consensus 329 l~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL----------~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv 398 (1019)
+..||-+.++.. +-..+....++..|.++- ...+.++..+|+++|+|+...++..|...++.|..+.++
T Consensus 2 L~~LRiLsRd~~-~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 2 LETLRILSRDPT-GLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred HHHHHHHccCcc-cchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 455565555533 333444444466665543 345789999999999999889999999999999999999
Q ss_pred HHhcCC-----ChhHHHHHHHHHHHhcc-ChhhhhhhhcccchHHHHHHhhhc--------C-------CCChHHHHHHH
Q 001733 399 KLLSSS-----HRPVRHESLLLLLELSS-TRSLCEKIGSIPGGILVLITFKFN--------W-------SIDVFAAEIAD 457 (1019)
Q Consensus 399 ~lL~~~-----~~~~r~~Aa~~L~~Ls~-~~~~~~~i~~~~g~I~~LV~lL~~--------~-------~~~~~~~~~A~ 457 (1019)
..|+.. +.+..-....+|+-++. ..+.+..+....+++..|+..|.. . ..+..+...++
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL 160 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL 160 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence 999876 67888889999998876 456777777777888888887641 1 12456678889
Q ss_pred HHHHHhcCCCCchHHHHhcCChHHHHHHhccC---------CHHHHHHHHHHHHHhccC-ccc-------cccc---cc-
Q 001733 458 QILRNLERNPDNIKCMAENGLLEPLMHHLNEG---------SEEIQMEMASYLGEIVLG-HDS-------KINV---PG- 516 (1019)
Q Consensus 458 ~aL~nLs~~~~n~~~i~~~G~i~~Lv~lL~~~---------~~~~~~~aa~~L~~La~~-~~~-------~~~i---~~- 516 (1019)
++|||+..+......--..+.++.|+.+|..- .......++.+|.|+-.. ... ...+ ..
T Consensus 161 KllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~ 240 (446)
T PF10165_consen 161 KLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDN 240 (446)
T ss_pred HHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCC
Confidence 99999975443332212335566666654421 245667777888877321 111 1111 11
Q ss_pred -chHHHHHHHHhcCChHHHHHHHHHHHHhhcCCcchHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCC
Q 001733 517 -RAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGL 595 (1019)
Q Consensus 517 -~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~ 595 (1019)
..+..|+.+|... |....... . ...+.|++.+|.... +.-+.+...|....--..
T Consensus 241 ~~~v~~Ll~~Ld~~--------------l~~~~~~~---l-~~~l~PlL~lL~~~~------~~~~~~Rk~lr~~lLP~~ 296 (446)
T PF10165_consen 241 MDVVERLLDFLDKR--------------LDKYEALK---L-DELLTPLLTLLTRLA------RAAREVRKYLRARLLPPD 296 (446)
T ss_pred hHHHHHHHHHHHHH--------------HHhcCccc---c-hhhHhhHHHHHHHHH------HhcHHHHHHHHHHhCCCh
Confidence 1466677766531 11111110 1 234555656665432 111222222322211111
Q ss_pred CcccccccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHHhC
Q 001733 596 EHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTK 643 (1019)
Q Consensus 596 ~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~La~ 643 (1019)
.+.-..-+ ....+-.+|++++.+ ..+.++..+...|+.||.
T Consensus 297 -~Dr~~~~e-----~~~tL~~rLlrLmt~-~~~~~k~~vaellf~Lc~ 337 (446)
T PF10165_consen 297 -KDRKKPPE-----KGDTLRSRLLRLMTS-PDPQLKDAVAELLFVLCK 337 (446)
T ss_pred -hhcccCCC-----CCcchHHHHHHHhCC-CCchHHHHHHHHHHHHHh
Confidence 11000011 124577899999998 669999999999999997
No 99
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.73 E-value=0.00097 Score=78.19 Aligned_cols=276 Identities=17% Similarity=0.117 Sum_probs=179.7
Q ss_pred HHHHHHhccChhhhhhhhcccchHHHHHHhh--------hcCCCChHHHHHHHHHHHHhcC-CCCchHHHHhcCChHHHH
Q 001733 413 LLLLLELSSTRSLCEKIGSIPGGILVLITFK--------FNWSIDVFAAEIADQILRNLER-NPDNIKCMAENGLLEPLM 483 (1019)
Q Consensus 413 a~~L~~Ls~~~~~~~~i~~~~g~I~~LV~lL--------~~~~~~~~~~~~A~~aL~nLs~-~~~n~~~i~~~G~i~~Lv 483 (1019)
..+|.-|+.++.+...+.. ..+|..|.++- .....++.+...|.++|.|+.. ++..+..+++.|+.+.++
T Consensus 2 L~~LRiLsRd~~~~~~l~~-~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 2 LETLRILSRDPTGLDPLFT-EEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred HHHHHHHccCcccchhhcc-HHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 4567777777777777765 56777777765 1245678999999999999985 455677788899999999
Q ss_pred HHhccC-----CHHHHHHHHHHHHHhcc-Cccccccccc--chHHHHHHHHhc----C-------------ChHHHHHHH
Q 001733 484 HHLNEG-----SEEIQMEMASYLGEIVL-GHDSKINVPG--RAASTLIRMVHS----G-------------NSLTRRIAF 538 (1019)
Q Consensus 484 ~lL~~~-----~~~~~~~aa~~L~~La~-~~~~~~~i~~--~~i~~Lv~lL~~----~-------------~~~~~~~A~ 538 (1019)
+.|+.. +.++.....++|.-++. ..+.+..+.+ +++..++..|.. . .......++
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL 160 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL 160 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence 999876 78899999999988875 6667766655 366666654432 0 123456789
Q ss_pred HHHHHhhcCCcchHHHHHcCcHHHHHHHHhhh---cc-CCCChhHHHHHHHHHHHHHhcCCCc------ccccccccCcc
Q 001733 539 KALMQISSHHPSCKILVEAGIVQVMAEEMFIR---II-HNEPMNSKEEAAAILANILESGLEH------HSLQVNSHGHT 608 (1019)
Q Consensus 539 ~aL~~Ls~~~~~~~~l~~~G~v~~Lv~lL~~~---~~-~~~~~~~~~~A~~~L~~L~~~~~~~------~~~~v~~~g~~ 608 (1019)
++|.|+..+.+....-...+.++.|+.++... .. ..........+..+|.|+--..... ..-.+...
T Consensus 161 KllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~--- 237 (446)
T PF10165_consen 161 KLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPE--- 237 (446)
T ss_pred HHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCC---
Confidence 99999987765533323456677777776644 21 1122355677777777763221110 00000111
Q ss_pred cchhhhHHHHHHHHcCC----CC---HHHHHHHHHHHHHHhCCCCchHHHHHHHHH---------------c-CChHHHH
Q 001733 609 MVSDYVVYNIIYMLKNS----TP---DELNVHLIRILQCLTKSPKPMATIVSVIKE---------------T-EASYSLL 665 (1019)
Q Consensus 609 l~~~~~i~~Ll~LL~~~----~~---~~v~~~a~~aL~~La~~~~~~~~i~~~i~~---------------~-g~i~~Lv 665 (1019)
-.....+..|+.+|... .. .+.-...+.+|..++... ..+++.++. . ..-..|+
T Consensus 238 ~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~---~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLl 314 (446)
T PF10165_consen 238 GDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAA---REVRKYLRARLLPPDKDRKKPPEKGDTLRSRLL 314 (446)
T ss_pred CCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhc---HHHHHHHHHHhCCChhhcccCCCCCcchHHHHH
Confidence 13345677777777541 11 234445566666666654 345555554 2 3335889
Q ss_pred HhhcCCCHHHHHHHHHHHHHhCcCCChhHH
Q 001733 666 EVINNPHDELAVAAIKLLTTLSPYLGHTLV 695 (1019)
Q Consensus 666 ~LL~~~~~~vr~~A~~~L~~Ls~~~~~~~~ 695 (1019)
+++.++.+.++..+..+|..||+.+...++
T Consensus 315 rLmt~~~~~~k~~vaellf~Lc~~d~~~~v 344 (446)
T PF10165_consen 315 RLMTSPDPQLKDAVAELLFVLCKEDASRFV 344 (446)
T ss_pred HHhCCCCchHHHHHHHHHHHHHhhhHHHHH
Confidence 999999999999999999999964433333
No 100
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.73 E-value=0.036 Score=66.98 Aligned_cols=527 Identities=14% Similarity=0.107 Sum_probs=275.4
Q ss_pred hHHHHHHhhc--CCHHHHHHHHHHHHhhcc-CChhHHHHHHhcCCHHHHHHHhcCCChhHHHHHHHHHHHhccChhhhhh
Q 001733 352 LPLLTKLLEY--KDRNVRCAAMELLRQLVV-EDDEGKEMIAETMDISILIKLLSSSHRPVRHESLLLLLELSSTRSLCEK 428 (1019)
Q Consensus 352 i~~Lv~lL~s--~~~~~~~~Al~~L~~La~-~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~~~~~~~ 428 (1019)
+|-+...|.+ .....+..++..|.++-. ..++.-.- ...-..+.++......-..+-..|..+...+...-.-...
T Consensus 478 vpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp-~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~ 556 (1233)
T KOG1824|consen 478 VPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHP-HLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQP 556 (1233)
T ss_pred chhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhccc-chhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCC
Confidence 4444444543 345567777777766432 22211000 1122345555555666667777777777766542100000
Q ss_pred ---hhc---ccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHHHhcCChHHHHHHhccCCHHHHHHHHHHHH
Q 001733 429 ---IGS---IPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLG 502 (1019)
Q Consensus 429 ---i~~---~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~ 502 (1019)
... ....+......|.....|.++++.|..+...+..+-......--...++.|++.|. ++-.+-.|+.+|.
T Consensus 557 ~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~--nEiTRl~AvkAlt 634 (1233)
T KOG1824|consen 557 PSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLG--NEITRLTAVKALT 634 (1233)
T ss_pred CccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh--chhHHHHHHHHHH
Confidence 000 01122333344555667889999999888776422111111111135666666664 5677888999999
Q ss_pred HhccCcc--cccccccchHHHHHHHHhcCChHHHHHHHHHHHHhhcCCcc--hHHHHHcCcHHHHHHHHhhhccCCCChh
Q 001733 503 EIVLGHD--SKINVPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPS--CKILVEAGIVQVMAEEMFIRIIHNEPMN 578 (1019)
Q Consensus 503 ~La~~~~--~~~~i~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~--~~~l~~~G~v~~Lv~lL~~~~~~~~~~~ 578 (1019)
.++..+- +...+...+++.|+..++......+...+.++-.|..+... ...+.+. ++..|..++.... ..
T Consensus 635 ~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~-vL~el~~Lisesd-----lh 708 (1233)
T KOG1824|consen 635 LIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEA-VLVELPPLISESD-----LH 708 (1233)
T ss_pred HHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH-HHHHhhhhhhHHH-----HH
Confidence 8887653 22333445789999999887777777788777777644321 2333332 2222333333321 46
Q ss_pred HHHHHHHHHHHHHhcCCCcccccccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHHh----CCCCchHHHHHH
Q 001733 579 SKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLT----KSPKPMATIVSV 654 (1019)
Q Consensus 579 ~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~La----~~~~~~~~i~~~ 654 (1019)
+-+.|.++|..+........ ......+++.++.++++ |-+|-.|..++..+- .+..+
T Consensus 709 vt~~a~~~L~tl~~~~ps~l---------~~~~~~iL~~ii~ll~S---pllqg~al~~~l~~f~alV~t~~~------- 769 (1233)
T KOG1824|consen 709 VTQLAVAFLTTLAIIQPSSL---------LKISNPILDEIIRLLRS---PLLQGGALSALLLFFQALVITKEP------- 769 (1233)
T ss_pred HHHHHHHHHHHHHhcccHHH---------HHHhhhhHHHHHHHhhC---ccccchHHHHHHHHHHHHHhcCCC-------
Confidence 66888888888877654321 22446788999999976 666666666554432 11111
Q ss_pred HHHcCChHHHHHhhcCCCHHH------------HHHHHHHHHHhCcCCChhHHHHhhhcCCChhHhhcccCCCCcChHHH
Q 001733 655 IKETEASYSLLEVINNPHDEL------------AVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCPTETIHITEKQ 722 (1019)
Q Consensus 655 i~~~g~i~~Lv~LL~~~~~~v------------r~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~LV~lL~~~~~~~~~~ 722 (1019)
+-+ +..|+.++..+-.+- -..++.+|...+.......+ ..|+.=+.++..++.++
T Consensus 770 --~l~-y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a----------~kl~~~~~s~~s~~~ik 836 (1233)
T KOG1824|consen 770 --DLD-YISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLA----------TKLIQDLQSPKSSDSIK 836 (1233)
T ss_pred --Ccc-HHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHH----------HHHHHHHhCCCCchhHH
Confidence 011 456777776654221 12233444444432222222 22332222333256788
Q ss_pred HHHHHHHhccCCCChhhHHHHHhCCChHHHHHHHHhhhccCCCccchhhhHHHHHHHHHHHHhcCCCchhHHHHHHhCCc
Q 001733 723 AVSAKFLAKLPHQNLTLNLALSARNVVPTILQTINLIQRSGTRTSRYASAYLEGLIGILVRFTTTLYEPQILFLARTHNF 802 (1019)
Q Consensus 723 ~~A~~~L~nL~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~lt~~~~~~~~~~~~~~~g~ 802 (1019)
..|.-.|+.+..+-+.. -..+.-..+++-+. +....++.+|.-+|.+++.+. -+ ..
T Consensus 837 vfa~LslGElgr~~~~s----~~~e~~~~iieaf~----------sp~edvksAAs~ALGsl~vgn-l~---------~y 892 (1233)
T KOG1824|consen 837 VFALLSLGELGRRKDLS----PQNELKDTIIEAFN----------SPSEDVKSAASYALGSLAVGN-LP---------KY 892 (1233)
T ss_pred HHHHhhhhhhccCCCCC----cchhhHHHHHHHcC----------CChHHHHHHHHHHhhhhhcCc-hH---------hH
Confidence 88998999887633211 11122223334332 235678888888999998762 22 23
Q ss_pred hHHHHHHHhcCCcHHHHHHHHHHHhhhccc-CCcCCCCCCcCCcccccccccCcccccCCCCCC-CCC-CCcccCCcccc
Q 001733 803 TSVFTELLMKTSCDEVQKLAAIGLENLSSE-SINLSKPPQIKSKKFMKFFSLPKSLSVGSSKKK-SVS-LCPVHRGACSS 879 (1019)
Q Consensus 803 i~~Lv~LL~~~~~~~vk~~AA~aL~nLs~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~c~v~~~~cs~ 879 (1019)
+|-+.+...+ .+.-|..--.+|..+... +.+.-.. ...++|..+.. ++..... ... .....+..
T Consensus 893 Lpfil~qi~s--qpk~QyLLLhSlkevi~~~svd~~~~---~v~~IW~lL~k-----~cE~~eegtR~vvAECLGkL--- 959 (1233)
T KOG1824|consen 893 LPFILEQIES--QPKRQYLLLHSLKEVIVSASVDGLKP---YVEKIWALLFK-----HCECAEEGTRNVVAECLGKL--- 959 (1233)
T ss_pred HHHHHHHHhc--chHhHHHHHHHHHHHHHHhccchhhh---hHHHHHHHHHH-----hcccchhhhHHHHHHHhhhH---
Confidence 4444444443 233333333333322111 1110000 11234443320 0000000 000 00001111
Q ss_pred Cccchhhh-ccchHHHHhhhccCchhhHHHHHHHHHhhhccCcchhhHHHHHHhccchHHHHHHHhhcChhhHHHHHHHH
Q 001733 880 QNTFCLID-AKAVDRLLACLYHENVEVVEAALSALCTLLDEKVDVDKSVSMLSEVNAIQHVLNVVKEHRQEVLQQKSFWM 958 (1019)
Q Consensus 880 ~~~~~Lv~-~gai~~Lv~lL~~~d~~v~~~Al~AL~~L~~d~~~~~~~~~~i~~~~~i~~l~~lL~~~~~~~~~~~A~~a 958 (1019)
++++ ..-++.|=..+.++.+..+..++.|......|... -.+.+.+ .-|...+.+++ .++..+++.|+-+
T Consensus 960 ----~l~epesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~---~id~~lk-~~ig~fl~~~~-dpDl~VrrvaLvv 1030 (1233)
T KOG1824|consen 960 ----VLIEPESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQ---PIDPLLK-QQIGDFLKLLR-DPDLEVRRVALVV 1030 (1233)
T ss_pred ----HhCChHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCC---ccCHHHH-HHHHHHHHHHh-CCchhHHHHHHHH
Confidence 1111 33577888888999999999999999887777542 1233332 34556677887 7899999999999
Q ss_pred HHHHHhh
Q 001733 959 IERFLVK 965 (1019)
Q Consensus 959 L~~i~~~ 965 (1019)
|......
T Consensus 1031 ~nSaahN 1037 (1233)
T KOG1824|consen 1031 LNSAAHN 1037 (1233)
T ss_pred HHHHHcc
Confidence 8665433
No 101
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.73 E-value=3.3e-05 Score=56.91 Aligned_cols=39 Identities=36% Similarity=0.851 Sum_probs=35.6
Q ss_pred cccCcccCCCceecCCCccccHHHHHHHHhhhccCCCCCCCCC
Q 001733 236 CPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTT 278 (1019)
Q Consensus 236 Cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~ 278 (1019)
||||.+..++|++++|||.|+..|+.+|+.. +...||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~----~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKS----GNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHh----CcCCCCCC
Confidence 8999999999999999999999999999995 46679976
No 102
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.72 E-value=0.0094 Score=68.49 Aligned_cols=524 Identities=12% Similarity=0.092 Sum_probs=248.5
Q ss_pred HHhcCChHHHHHHhh----cC-CHHHHHHHHHHHHhhccCChhHHHHHH-hcCCHHHHHHHhcCCChhHHHHHHHHHHHh
Q 001733 346 VRNVGVLPLLTKLLE----YK-DRNVRCAAMELLRQLVVEDDEGKEMIA-ETMDISILIKLLSSSHRPVRHESLLLLLEL 419 (1019)
Q Consensus 346 i~~~g~i~~Lv~lL~----s~-~~~~~~~Al~~L~~La~~~~~~k~~I~-~~g~i~~Lv~lL~~~~~~~r~~Aa~~L~~L 419 (1019)
++++=+++.|..+|+ |. +.+.|...+.+...++.-. .+..+- -.+.+..+-++|...+..+|..++.+|..|
T Consensus 308 va~algv~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~ll--G~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~l 385 (975)
T COG5181 308 VADALGVEELLPFLEALCGSRKSWEARHTGIRIAQQICELL--GRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYL 385 (975)
T ss_pred HHHhhCcHHHHHHHHHHhcCccchhhhchhhHHHHHHHHHh--CccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHH
Confidence 344445666666665 22 4555555554444433100 111111 135566777778777777887777777766
Q ss_pred ccCh-hhhhhhhcccchHHHHHHhhhcCCC-ChHHHHHHHHHHHHhcCCCCchHHHHhcCChHHHHHHhccCCHHHHHHH
Q 001733 420 SSTR-SLCEKIGSIPGGILVLITFKFNWSI-DVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEM 497 (1019)
Q Consensus 420 s~~~-~~~~~i~~~~g~I~~LV~lL~~~~~-~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~lL~~~~~~~~~~a 497 (1019)
+... ... |+.....+.+|.+=.+++.+ .-...-+|.+.+.-|- .++..... .......+.+.+.+.+++++...
T Consensus 386 ae~~~Pyg--ie~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm-~peYa~h~-tre~m~iv~ref~spdeemkk~~ 461 (975)
T COG5181 386 AELVGPYG--IEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLM-SPEYACHD-TREHMEIVFREFKSPDEEMKKDL 461 (975)
T ss_pred HHhcCCcc--hHHHHHHHHHHHHHHHhcCCchHHHHHHHhccccccC-ChHhhhhh-HHHHHHHHHHHhCCchhhcchhH
Confidence 5421 111 00111122222222211111 0000111111111111 11100000 00123455666667777777666
Q ss_pred HHHHHHhccCcc-cccccccchHHHHHHHHhc-------CChHHHHHHHHHHHHhhcCCcchHHH-------------HH
Q 001733 498 ASYLGEIVLGHD-SKINVPGRAASTLIRMVHS-------GNSLTRRIAFKALMQISSHHPSCKIL-------------VE 556 (1019)
Q Consensus 498 a~~L~~La~~~~-~~~~i~~~~i~~Lv~lL~~-------~~~~~~~~A~~aL~~Ls~~~~~~~~l-------------~~ 556 (1019)
.-++..++.... .-..+.+...|-+.+-... .+-+..-.+..+|....+++.....+ ..
T Consensus 462 l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v~~kil~~~~De~ep~r~m~ 541 (975)
T COG5181 462 LVVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRVSRKILEYYSDEPEPYRKMN 541 (975)
T ss_pred HHHHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCChHHHHHHHhhccCCcchhhhhh
Confidence 666665554222 1112222222322221110 01111122333444443333222222 23
Q ss_pred cCcHHHHHHHHhhhccCCCChhHHHHHHHHH-HHHHhcCCCcccccccccCccc---------chhhhHHHHHHHHcCCC
Q 001733 557 AGIVQVMAEEMFIRIIHNEPMNSKEEAAAIL-ANILESGLEHHSLQVNSHGHTM---------VSDYVVYNIIYMLKNST 626 (1019)
Q Consensus 557 ~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L-~~L~~~~~~~~~~~v~~~g~~l---------~~~~~i~~Ll~LL~~~~ 626 (1019)
+|.+...+..|-..+.+ .+..+.-...+ ..+.... ....++..-.+..+ ...-+|..++.+|++ .
T Consensus 542 a~~vsri~~~lg~~~~d---Erleerl~d~il~Afqeq~-~t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~-k 616 (975)
T COG5181 542 AGLVSRIFSRLGRLGFD---ERLEERLYDSILNAFQEQD-TTVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRS-K 616 (975)
T ss_pred hHHHHHHHHhccccccc---HHHHHHHHHHHHHHHHhcc-ccccEEEecccceeeehhhccCcchHHHHHHHHHHhcC-C
Confidence 56777777766554432 34444333333 3333322 22222211111111 123567888999999 9
Q ss_pred CHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHhCcCCChh-HHHHhhhcCCCh
Q 001733 627 PDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTLSPYLGHT-LVERLCKTRGQP 705 (1019)
Q Consensus 627 ~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~~vr~~A~~~L~~Ls~~~~~~-~~~~l~~~~g~i 705 (1019)
+|.++++|+.....|+.--+.+-+ -+.+...|. .|.+.|....+++.-..+.+++++....+-. .+-.+ .|.+
T Consensus 617 ~p~vR~~aadl~~sl~~vlk~c~e-~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi---~~il 690 (975)
T COG5181 617 PPDVRIRAADLMGSLAKVLKACGE-TKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPI---SGIL 690 (975)
T ss_pred CccHHHHHHHHHHHHHHHHHhcch-HHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCch---hhcc
Confidence 999999999998887642211100 123333333 3567777888899888888888776321111 11111 4778
Q ss_pred hHhhcccCCCCcChHHHHHHHHHHhccCCCChhhHHHHHhCCChHHHHHHHHhhhccCCCccchhhhHHHHHHHHHHHHh
Q 001733 706 ENLIQCPTETIHITEKQAVSAKFLAKLPHQNLTLNLALSARNVVPTILQTINLIQRSGTRTSRYASAYLEGLIGILVRFT 785 (1019)
Q Consensus 706 ~~LV~lL~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~lt 785 (1019)
|.|..+|.+.. ..+.......++.++...++. .....|+ |++
T Consensus 691 P~ltPILrnkh--~Kv~~nti~lvg~I~~~~pey---------------------------i~~rEWM---------RIc 732 (975)
T COG5181 691 PSLTPILRNKH--QKVVANTIALVGTICMNSPEY---------------------------IGVREWM---------RIC 732 (975)
T ss_pred ccccHhhhhhh--HHHhhhHHHHHHHHHhcCccc---------------------------CCHHHHH---------HHH
Confidence 88888887654 345554444444444322210 0011221 222
Q ss_pred cCCCchhHHHHHHhCCchHHHHHHHhcCCcHHHHHHHHHHHhhhcccCCcCCCCCCcCCcccccccccCcccccCCCCCC
Q 001733 786 TTLYEPQILFLARTHNFTSVFTELLMKTSCDEVQKLAAIGLENLSSESINLSKPPQIKSKKFMKFFSLPKSLSVGSSKKK 865 (1019)
Q Consensus 786 ~~~~~~~~~~~~~~~g~i~~Lv~LL~~~~~~~vk~~AA~aL~nLs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 865 (1019)
. -|+++|++ -+.++|+.|...++.+|.-- ++
T Consensus 733 f------------------eLvd~Lks-~nKeiRR~A~~tfG~Is~ai---------GP--------------------- 763 (975)
T COG5181 733 F------------------ELVDSLKS-WNKEIRRNATETFGCISRAI---------GP--------------------- 763 (975)
T ss_pred H------------------HHHHHHHH-hhHHHHHhhhhhhhhHHhhc---------CH---------------------
Confidence 2 26788888 68889999888888776321 00
Q ss_pred CCCCCcccCCccccCccchhhhccchHHHHhhhccCchhhHHHHHHHHHhhhccCcchhhHHHHHHhccchHHHHHHHhh
Q 001733 866 SVSLCPVHRGACSSQNTFCLIDAKAVDRLLACLYHENVEVVEAALSALCTLLDEKVDVDKSVSMLSEVNAIQHVLNVVKE 945 (1019)
Q Consensus 866 ~~~~c~v~~~~cs~~~~~~Lv~~gai~~Lv~lL~~~d~~v~~~Al~AL~~L~~d~~~~~~~~~~i~~~~~i~~l~~lL~~ 945 (1019)
+..+..|++=|+.++-.-+....-|++..+.. +. -...+|.|+.--.
T Consensus 764 ----------------------qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~-------cg---pfsVlP~lm~dY~- 810 (975)
T COG5181 764 ----------------------QDVLDILLNNLKVQERQQRVCTSVAISIVAEY-------CG---PFSVLPTLMSDYE- 810 (975)
T ss_pred ----------------------HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhh-------cC---chhhHHHHHhccc-
Confidence 12344555555554443333333333332211 00 0122344433332
Q ss_pred cChhhHHHHHHHHHHHHHhhCCccccccccccccchHHHHHHhhcCCchhhHHHHHHHHHhccC
Q 001733 946 HRQEVLQQKSFWMIERFLVKGGNKQASDISQDRLLPATLVSAFHHGDVNTRQMAEKILRHLNKM 1009 (1019)
Q Consensus 946 ~~~~~~~~~A~~aL~~i~~~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~~L~~L~~~ 1009 (1019)
.++-.+|.-.+.++.-+|.-- .+....|... .. +.|-+++.+.|+.-|+.|..++.||..=
T Consensus 811 TPe~nVQnGvLkam~fmFeyi-g~~s~dYvy~-it-PlleDAltDrD~vhRqta~nvI~Hl~Ln 871 (975)
T COG5181 811 TPEANVQNGVLKAMCFMFEYI-GQASLDYVYS-IT-PLLEDALTDRDPVHRQTAMNVIRHLVLN 871 (975)
T ss_pred CchhHHHHhHHHHHHHHHHHH-HHHHHHHHHH-hh-HHHHhhhcccchHHHHHHHHHHHHHhcC
Confidence 445556666666655555431 1222222222 22 2478899999999999999999999753
No 103
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=0.0033 Score=66.96 Aligned_cols=263 Identities=16% Similarity=0.190 Sum_probs=170.4
Q ss_pred CCHHHHHHHHHHHHHHHhcccccchHHH-hcCChHHHHHHhhcCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHH
Q 001733 320 GSDRMVLEAIKDLQTVCQRKQYNKVQVR-NVGVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILI 398 (1019)
Q Consensus 320 ~~~~~~~~Al~~L~~l~~~~~~~r~~i~-~~g~i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv 398 (1019)
.++..+..|+..+-.++.+ ..+.+.. +.-.++.+.+++...++ -+.|+.+|.|++ .++..++.+.+. .+..++
T Consensus 15 ~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnls-q~~~l~~~ll~~-~~k~l~ 88 (353)
T KOG2973|consen 15 LSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLS-QKEELRKKLLQD-LLKVLM 88 (353)
T ss_pred CChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHH-hhHHHHHHHHHH-HHHHHH
Confidence 3455566667666666655 2222222 23457778888887665 678999999998 777788888766 888888
Q ss_pred HHhcCCChhHHHHHHHHHHHhccChhhhhhhhc-cc----chHHHHHHhhhcCCCCh-HHHHHHHHHHHHhcCCCCchHH
Q 001733 399 KLLSSSHRPVRHESLLLLLELSSTRSLCEKIGS-IP----GGILVLITFKFNWSIDV-FAAEIADQILRNLERNPDNIKC 472 (1019)
Q Consensus 399 ~lL~~~~~~~r~~Aa~~L~~Ls~~~~~~~~i~~-~~----g~I~~LV~lL~~~~~~~-~~~~~A~~aL~nLs~~~~n~~~ 472 (1019)
+.+.......-...+.+|.||+..+.....+-. .. .++.-|+.-....+.+. .-...-+-.+.||+.....|..
T Consensus 89 ~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~~~~gR~l 168 (353)
T KOG2973|consen 89 DMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQFEAGRKL 168 (353)
T ss_pred HHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhhhhhhhhH
Confidence 888877566677889999999998765544332 12 35555555543233332 2245667788999998888887
Q ss_pred HHhcCChHH--HHHHhccCCHHHHHHHHHHHHHhccCccccccccc-c--hHHHHH---------------------HHH
Q 001733 473 MAENGLLEP--LMHHLNEGSEEIQMEMASYLGEIVLGHDSKINVPG-R--AASTLI---------------------RMV 526 (1019)
Q Consensus 473 i~~~G~i~~--Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~i~~-~--~i~~Lv---------------------~lL 526 (1019)
+.+...+|. |+.+-..++.--+...+++|.|+|-+......+.. + .+|.++ ++|
T Consensus 169 ~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~~LP~eLQyL 248 (353)
T KOG2973|consen 169 LLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDMAKLPVELQYL 248 (353)
T ss_pred hcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHHhcCCHhhhcC
Confidence 776654432 22222212333345678899998887666555433 2 345443 223
Q ss_pred h-----cCChHHHHHHHHHHHHhhcCCcchHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHh
Q 001733 527 H-----SGNSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILE 592 (1019)
Q Consensus 527 ~-----~~~~~~~~~A~~aL~~Ls~~~~~~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~ 592 (1019)
. .+++.++..-+.+|.-||.....|+.+...|+.+.|-+ +.... ...+.++.+-.+..-+..
T Consensus 249 p~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRE-lhk~e---~ded~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 249 PEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRE-LHKWE---EDEDIREACEQVVQMLVR 315 (353)
T ss_pred CccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHH-HhcCC---CcHHHHHHHHHHHHHHHh
Confidence 2 24578999999999999999999999999988776654 55443 224666666554444444
No 104
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.70 E-value=0.0088 Score=67.97 Aligned_cols=250 Identities=23% Similarity=0.242 Sum_probs=172.7
Q ss_pred CChHHHHHHhhcCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHhcCCChhHHHHHHHHHHHhccChhhhhhh
Q 001733 350 GVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSSHRPVRHESLLLLLELSSTRSLCEKI 429 (1019)
Q Consensus 350 g~i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~~~~~~~i 429 (1019)
..++.+++.+.+.+..++..|...|..+. ..-+++.+..+|.+.++.+|..|+.+|..+
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~-----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~---------- 101 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELG-----------SEEAVPLLRELLSDEDPRVRDAAADALGEL---------- 101 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhc-----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHcc----------
Confidence 46888999999999999999998876653 345789999999999999999999877665
Q ss_pred hcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHHHhcCChHHHHHHhccCCH------------HHHHHH
Q 001733 430 GSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSE------------EIQMEM 497 (1019)
Q Consensus 430 ~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~lL~~~~~------------~~~~~a 497 (1019)
....+++.|++++.. +.+..++..|+.+|..+- ...++.+|+..+.+... .++..+
T Consensus 102 -~~~~a~~~li~~l~~-d~~~~vR~~aa~aL~~~~----------~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a 169 (335)
T COG1413 102 -GDPEAVPPLVELLEN-DENEGVRAAAARALGKLG----------DERALDPLLEALQDEDSGSAAAALDAALLDVRAAA 169 (335)
T ss_pred -CChhHHHHHHHHHHc-CCcHhHHHHHHHHHHhcC----------chhhhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence 236789999999963 567888999999998653 33348889998887552 345555
Q ss_pred HHHHHHhccCcccccccccchHHHHHHHHhcCChHHHHHHHHHHHHhhcCCcchHHHHHcCcHHHHHHHHhhhccCCCCh
Q 001733 498 ASYLGEIVLGHDSKINVPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPM 577 (1019)
Q Consensus 498 a~~L~~La~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~~~~l~~~G~v~~Lv~lL~~~~~~~~~~ 577 (1019)
+..|..+-. ...++.+..++.+.+..++..|+.+|..+.... ..+.+.+...+.... .
T Consensus 170 ~~~l~~~~~---------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~~-----~ 227 (335)
T COG1413 170 AEALGELGD---------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDES-----L 227 (335)
T ss_pred HHHHHHcCC---------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCCC-----H
Confidence 555553321 136899999999988999999999999988765 234455555554332 3
Q ss_pred hHHHHHHHHHHHHHhcCCCcccccccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 001733 578 NSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKE 657 (1019)
Q Consensus 578 ~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~ 657 (1019)
.++..++..|..+- ....+..+...+.. .+..++..+...+..+ . -
T Consensus 228 ~vr~~~~~~l~~~~-------------------~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~---~-----------~ 273 (335)
T COG1413 228 EVRKAALLALGEIG-------------------DEEAVDALAKALED-EDVILALLAAAALGAL---D-----------L 273 (335)
T ss_pred HHHHHHHHHhcccC-------------------cchhHHHHHHHHhc-cchHHHHHHHHHhccc---C-----------c
Confidence 55555555444321 13456777778877 6666655544444311 0 0
Q ss_pred cCChHHHHHhhcCCCHHHHHHHHHHHHHhCc
Q 001733 658 TEASYSLLEVINNPHDELAVAAIKLLTTLSP 688 (1019)
Q Consensus 658 ~g~i~~Lv~LL~~~~~~vr~~A~~~L~~Ls~ 688 (1019)
......+...+.+....++..+...+.....
T Consensus 274 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 304 (335)
T COG1413 274 AEAALPLLLLLIDEANAVRLEAALALGQIGQ 304 (335)
T ss_pred hhhHHHHHHHhhcchhhHHHHHHHHHHhhcc
Confidence 1223455566667777778777777766654
No 105
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=2.1e-05 Score=76.26 Aligned_cols=53 Identities=23% Similarity=0.516 Sum_probs=44.8
Q ss_pred CccccccCcccCCC--ceecCCCccccHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCcc
Q 001733 232 ETFYCPLTKEIMDD--PVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNT 289 (1019)
Q Consensus 232 ~~~~Cpi~~~~m~d--Pv~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~~~~l~p 289 (1019)
.-|-||||++=++. ||-..|||.||+.||+..++. ...||.|++.++++.+.+
T Consensus 130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~-----~~~CP~C~kkIt~k~~~r 184 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN-----TNKCPTCRKKITHKQFHR 184 (187)
T ss_pred cccCCCceecchhhccccccccchhHHHHHHHHHHHh-----CCCCCCcccccchhhhee
Confidence 35899999998887 667799999999999999987 357999999888766543
No 106
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.0065 Score=64.83 Aligned_cols=343 Identities=12% Similarity=0.121 Sum_probs=207.7
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHhccChh---hhh-hhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCch
Q 001733 395 SILIKLLSSSHRPVRHESLLLLLELSSTRS---LCE-KIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNI 470 (1019)
Q Consensus 395 ~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~~~---~~~-~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~ 470 (1019)
|.|-.=|..++..++..|+..+..+-.+.+ .-+ ......|..+.++..+ +.+|.++.+.|...+..++..+...
T Consensus 85 pdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcI--ggeddeVAkAAiesikrialfpaal 162 (524)
T KOG4413|consen 85 PDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCI--GGEDDEVAKAAIESIKRIALFPAAL 162 (524)
T ss_pred HHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHH--cCCcHHHHHHHHHHHHHHHhcHHHH
Confidence 333334445566677777766666654332 111 1122477888888888 5678889999999999999999998
Q ss_pred HHHHhcCChHHH--HHHhccCCHHHHHHHHHHHHHhcc-Ccccccccccch-HHHHHHHHhc-CChHHHHHHHHHHHHhh
Q 001733 471 KCMAENGLLEPL--MHHLNEGSEEIQMEMASYLGEIVL-GHDSKINVPGRA-ASTLIRMVHS-GNSLTRRIAFKALMQIS 545 (1019)
Q Consensus 471 ~~i~~~G~i~~L--v~lL~~~~~~~~~~aa~~L~~La~-~~~~~~~i~~~~-i~~Lv~lL~~-~~~~~~~~A~~aL~~Ls 545 (1019)
..+.++...+++ ..+-...+.-++......+-.+.+ +++........| +..|..=|+. .+.-++.+++.....|+
T Consensus 163 eaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLa 242 (524)
T KOG4413|consen 163 EAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELA 242 (524)
T ss_pred HHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHH
Confidence 899888777664 333344566667777777777765 666655555544 5555555553 44557888899999999
Q ss_pred cCCcchHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCcccccccccCcccch--hhhHHHHHHHHc
Q 001733 546 SHHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVS--DYVVYNIIYMLK 623 (1019)
Q Consensus 546 ~~~~~~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~--~~~i~~Ll~LL~ 623 (1019)
.....++.+.+.|.|+.+-.++...+ +.|- -+-.+.-....+-.. +.+ ++-.-+.+.. -..|...+.++.
T Consensus 243 eteHgreflaQeglIdlicnIIsGad--sdPf-ekfralmgfgkffgk----eai-mdvseeaicealiiaidgsfEmiE 314 (524)
T KOG4413|consen 243 ETEHGREFLAQEGLIDLICNIISGAD--SDPF-EKFRALMGFGKFFGK----EAI-MDVSEEAICEALIIAIDGSFEMIE 314 (524)
T ss_pred HHhhhhhhcchhhHHHHHHHHhhCCC--CCcH-HHHHHHHHHHHHhcc----hHH-hhcCHHHHHHHHHHHHHhhHHhhh
Confidence 88888999999999999999887544 3342 222233322222221 111 0000000010 123445555666
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCC--hHHHH-HhhcCCCHHHHHHHHHHHHHhC---cCCChhHHH-
Q 001733 624 NSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETEA--SYSLL-EVINNPHDELAVAAIKLLTTLS---PYLGHTLVE- 696 (1019)
Q Consensus 624 ~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~--i~~Lv-~LL~~~~~~vr~~A~~~L~~Ls---~~~~~~~~~- 696 (1019)
. .+|+.++.|+.++..+.++.++. +.+...|- ...++ +....+...-+..+..+|.+++ +-.++.+.+
T Consensus 315 m-nDpdaieaAiDalGilGSnteGa----dlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDg 389 (524)
T KOG4413|consen 315 M-NDPDAIEAAIDALGILGSNTEGA----DLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDG 389 (524)
T ss_pred c-CCchHHHHHHHHHHhccCCcchh----HHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhcccc
Confidence 6 88999999999999999887762 22222222 22233 2222222344556666676666 222222221
Q ss_pred ----Hhhh--------c--CCChhHhhcccCCCCcChHHHHHHHHHHhccCCCChhhHHHHHhCCChHHHHH
Q 001733 697 ----RLCK--------T--RGQPENLIQCPTETIHITEKQAVSAKFLAKLPHQNLTLNLALSARNVVPTILQ 754 (1019)
Q Consensus 697 ----~l~~--------~--~g~i~~LV~lL~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~l~~~g~l~~Lv~ 754 (1019)
.++. + -.-++....+++.+. ++++.++...+..+......+...+...|.++....
T Consensus 390 kaeerlrclifdaaaqstkldPleLFlgilqQpf--pEihcAalktfTAiaaqPWalkeifakeefieiVtD 459 (524)
T KOG4413|consen 390 KAEERLRCLIFDAAAQSTKLDPLELFLGILQQPF--PEIHCAALKTFTAIAAQPWALKEIFAKEEFIEIVTD 459 (524)
T ss_pred HHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCC--hhhHHHHHHHHHHHHcCcHHHHHHhcCccceeeecc
Confidence 1111 0 023455667777665 589999999888887766677677766777665554
No 107
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=0.0033 Score=71.73 Aligned_cols=296 Identities=18% Similarity=0.125 Sum_probs=194.8
Q ss_pred HHHHHHHHHHHHHHHhcccccch-HHHhcCChHHHHHHhhcCCHHHHHHHHHHHHhhccCChhHHHHHH-hcCCHHHHHH
Q 001733 322 DRMVLEAIKDLQTVCQRKQYNKV-QVRNVGVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIA-ETMDISILIK 399 (1019)
Q Consensus 322 ~~~~~~Al~~L~~l~~~~~~~r~-~i~~~g~i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~-~~g~i~~Lv~ 399 (1019)
+..+..+.+-+-.+.++-...+. .+.-.+.||.|-..+...++..|.--+.-|..|- .-++ .+.+. -...++-|..
T Consensus 138 d~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Ld-s~P~-~~m~~yl~~~ldGLf~ 215 (675)
T KOG0212|consen 138 DQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLD-SVPD-LEMISYLPSLLDGLFN 215 (675)
T ss_pred ccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh-cCCc-HHHHhcchHHHHHHHH
Confidence 33444444444444443222222 2223456777777777778999998888887773 2222 23332 2456778889
Q ss_pred HhcCCChhHHHHHHHHHHHh----ccChhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHHHh
Q 001733 400 LLSSSHRPVRHESLLLLLEL----SSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAE 475 (1019)
Q Consensus 400 lL~~~~~~~r~~Aa~~L~~L----s~~~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~ 475 (1019)
+|+..+.++|..+-.+|.+. -..++.- .....|+.||.-+ ++.++..+..|..-+.....-..+.....-
T Consensus 216 ~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~----d~~~~i~vlv~~l--~ss~~~iq~~al~Wi~efV~i~g~~~l~~~ 289 (675)
T KOG0212|consen 216 MLSDSSDEVRTLTDTLLSEFLAEIRSSPSSM----DYDDMINVLVPHL--QSSEPEIQLKALTWIQEFVKIPGRDLLLYL 289 (675)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHhcCcccc----Ccccchhhccccc--cCCcHHHHHHHHHHHHHHhcCCCcchhhhh
Confidence 99999899987666655544 3333321 3355788888888 467889999998888887765555555555
Q ss_pred cCChHHHHHHhccCCHH-HHHHHHH---HHHHhccCcccccccccc-hHHHHHHHHhcCChHHHHHHHHHHHHhhcCCcc
Q 001733 476 NGLLEPLMHHLNEGSEE-IQMEMAS---YLGEIVLGHDSKINVPGR-AASTLIRMVHSGNSLTRRIAFKALMQISSHHPS 550 (1019)
Q Consensus 476 ~G~i~~Lv~lL~~~~~~-~~~~aa~---~L~~La~~~~~~~~i~~~-~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~ 550 (1019)
+|++..++..+.+..+. .++.+.. .|..+++.+..+..+.=| .+..|.+.+.+...+.|-.++.-+..|-...++
T Consensus 290 s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ 369 (675)
T KOG0212|consen 290 SGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPG 369 (675)
T ss_pred hhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcc
Confidence 67777777777765543 3333322 456667766666666434 689999999999999999999999998887777
Q ss_pred hHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCcccccccccCcccchhhhHHHHHHHHcCCCCHHH
Q 001733 551 CKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDEL 630 (1019)
Q Consensus 551 ~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v 630 (1019)
..........+.|+.-|.+.+ +.+...+..+|+++|.+..... --.++..|+.+... ...-+
T Consensus 370 ql~~h~~~if~tLL~tLsd~s-----d~vvl~~L~lla~i~~s~~~~~------------~~~fl~sLL~~f~e-~~~~l 431 (675)
T KOG0212|consen 370 QLLVHNDSIFLTLLKTLSDRS-----DEVVLLALSLLASICSSSNSPN------------LRKFLLSLLEMFKE-DTKLL 431 (675)
T ss_pred hhhhhccHHHHHHHHhhcCch-----hHHHHHHHHHHHHHhcCccccc------------HHHHHHHHHHHHhh-hhHHH
Confidence 655556778888888777543 5888999999999999875431 13456666666665 44445
Q ss_pred HHHHHHHHHHHhC
Q 001733 631 NVHLIRILQCLTK 643 (1019)
Q Consensus 631 ~~~a~~aL~~La~ 643 (1019)
...+.-++..+|.
T Consensus 432 ~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 432 EVRGNLIIRQLCL 444 (675)
T ss_pred HhhhhHHHHHHHH
Confidence 5555555555554
No 108
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.65 E-value=0.016 Score=67.51 Aligned_cols=348 Identities=13% Similarity=0.040 Sum_probs=200.7
Q ss_pred hHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCccccccc
Q 001733 435 GILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDSKINV 514 (1019)
Q Consensus 435 ~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~i 514 (1019)
.|..|..-+ +...+.+++....+|..+....+.... .-..+-+.+++..+.-.-+..++..++-+..+.-. ..+
T Consensus 97 ~~~~~~~~~--~tps~~~q~~~~~~l~~~~~~~~~~~~---~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i-~~~ 170 (569)
T KOG1242|consen 97 IIEILLEEL--DTPSKSVQRAVSTCLPPLVVLSKGLSG---EYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGI-ESL 170 (569)
T ss_pred HHHHHHHhc--CCCcHHHHHHHHHHhhhHHHHhhccCH---HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHH-hhh
Confidence 444555555 455667777777777777543222211 12345677788877777788888888877654322 222
Q ss_pred cc-chHHHHHHHHhcCChH-HHHHHHHHHHHhhcCCcchHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHh
Q 001733 515 PG-RAASTLIRMVHSGNSL-TRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILE 592 (1019)
Q Consensus 515 ~~-~~i~~Lv~lL~~~~~~-~~~~A~~aL~~Ls~~~~~~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~ 592 (1019)
.+ +.+..|-+.+.+.... .++.+.-+.-..+.+-. ...+.+.++.+-.++.+.+. ....+++.|..+...+..
T Consensus 171 ~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg---~~~EPyiv~~lp~il~~~~d--~~~~Vr~Aa~~a~kai~~ 245 (569)
T KOG1242|consen 171 KEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG---PPFEPYIVPILPSILTNFGD--KINKVREAAVEAAKAIMR 245 (569)
T ss_pred hhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC---CCCCchHHhhHHHHHHHhhc--cchhhhHHHHHHHHHHHH
Confidence 33 4677777777775443 33333333322222211 33456777777777765531 124677777777666655
Q ss_pred cCCCcccccccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCCC
Q 001733 593 SGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPH 672 (1019)
Q Consensus 593 ~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~ 672 (1019)
.-... ....+++.++.-+.. .....+.+++..|..++.+.+. .-...-...+|.+.+-|.+.+
T Consensus 246 ~~~~~------------aVK~llpsll~~l~~-~kWrtK~aslellg~m~~~ap~----qLs~~lp~iiP~lsevl~DT~ 308 (569)
T KOG1242|consen 246 CLSAY------------AVKLLLPSLLGSLLE-AKWRTKMASLELLGAMADCAPK----QLSLCLPDLIPVLSEVLWDTK 308 (569)
T ss_pred hcCcc------------hhhHhhhhhHHHHHH-HhhhhHHHHHHHHHHHHHhchH----HHHHHHhHhhHHHHHHHccCC
Confidence 43221 224566666666665 4567788899999998876543 223445678899999999999
Q ss_pred HHHHHHHHHHHHHhCcCCChhHHHHhhhcCCChhHhhcccCCCCcChHHHHHHHHHHhccCCCChhhHHHHHhCCChHHH
Q 001733 673 DELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCPTETIHITEKQAVSAKFLAKLPHQNLTLNLALSARNVVPTI 752 (1019)
Q Consensus 673 ~~vr~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~LV~lL~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~l~~~g~l~~L 752 (1019)
+++|..+..+|..++.-..+.-. ...+|.|++.+.++.. . ...++..|+.-.- .. -+++-.+..+
T Consensus 309 ~evr~a~~~~l~~~~svidN~dI------~~~ip~Lld~l~dp~~--~-~~e~~~~L~~ttF-----V~-~V~~psLalm 373 (569)
T KOG1242|consen 309 PEVRKAGIETLLKFGSVIDNPDI------QKIIPTLLDALADPSC--Y-TPECLDSLGATTF-----VA-EVDAPSLALM 373 (569)
T ss_pred HHHHHHHHHHHHHHHHhhccHHH------HHHHHHHHHHhcCccc--c-hHHHHHhhcceee-----ee-eecchhHHHH
Confidence 99999999999999853333221 1357889998877652 1 1222222222110 00 0122334444
Q ss_pred HHHHHhhhccCCCccchhhhHHHHHHHHHHHHhcCCCchhHHHHHHhCCchHHHHHHHhcCCcHHHHHHHHHHHhhhccc
Q 001733 753 LQTINLIQRSGTRTSRYASAYLEGLIGILVRFTTTLYEPQILFLARTHNFTSVFTELLMKTSCDEVQKLAAIGLENLSSE 832 (1019)
Q Consensus 753 v~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~lt~~~~~~~~~~~~~~~g~i~~Lv~LL~~~~~~~vk~~AA~aL~nLs~~ 832 (1019)
+-+|+. +..+. ...+...++.+.-+.+....||....-.. --++|.|-..+.+ ..|++|..|+.||+.+-..
T Consensus 374 vpiL~R---~l~eR---st~~kr~t~~IidNm~~LveDp~~lapfl-~~Llp~lk~~~~d-~~PEvR~vaarAL~~l~e~ 445 (569)
T KOG1242|consen 374 VPILKR---GLAER---STSIKRKTAIIIDNMCKLVEDPKDLAPFL-PSLLPGLKENLDD-AVPEVRAVAARALGALLER 445 (569)
T ss_pred HHHHHH---HHhhc---cchhhhhHHHHHHHHHHhhcCHHHHhhhH-HHHhhHHHHHhcC-CChhHHHHHHHHHHHHHHH
Confidence 445442 11000 11122334444444443323565544322 2456777777778 6899999999999877544
Q ss_pred C
Q 001733 833 S 833 (1019)
Q Consensus 833 ~ 833 (1019)
-
T Consensus 446 ~ 446 (569)
T KOG1242|consen 446 L 446 (569)
T ss_pred H
Confidence 3
No 109
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=5.4e-05 Score=86.04 Aligned_cols=72 Identities=26% Similarity=0.360 Sum_probs=64.7
Q ss_pred ccCCCCccccccCcccCCCceecC-CCccccHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCccCHhHHHHHHHHHHH
Q 001733 227 IEPLYETFYCPLTKEIMDDPVTIE-SGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVALKTTIEEWKDR 303 (1019)
Q Consensus 227 ~~~~~~~~~Cpi~~~~m~dPv~~~-~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~~~~l~pn~~Lr~~I~~w~~~ 303 (1019)
+.++|++|+.|++-.+|+|||++| +|-|.+|+.|..++-+ ..++|+.+.||+-.+.+||-.||+-|-.|...
T Consensus 848 ~GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahlls-----d~tDPFNRmPLtlddVtpn~eLrekIn~f~k~ 920 (929)
T COG5113 848 MGDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLS-----DGTDPFNRMPLTLDDVTPNAELREKINRFYKC 920 (929)
T ss_pred ccCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhc-----CCCCccccCCCchhhcCCCHHHHHHHHHHHhc
Confidence 446999999999999999999995 5899999999999987 35899999999999999999999999887543
No 110
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.63 E-value=0.029 Score=65.50 Aligned_cols=344 Identities=17% Similarity=0.150 Sum_probs=206.7
Q ss_pred ChHHHHHHhccCCHHHHHHHHHHHHHhccCcccccccccchHHHHHHHHhcCChHHHHHHHHHHHHhhcCCcchHHHHHc
Q 001733 478 LLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDSKINVPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEA 557 (1019)
Q Consensus 478 ~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~~~~l~~~ 557 (1019)
.+..|+.-+...++.+|.....+|.-+....++.. .....+-+.+++...+...+..+...++.+..+.. ...+.+.
T Consensus 97 ~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~--~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~-i~~~~~~ 173 (569)
T KOG1242|consen 97 IIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLS--GEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLG-IESLKEF 173 (569)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccC--HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH-Hhhhhhh
Confidence 45677777888888999888888887765333221 11246778888988788888889999998887632 4566778
Q ss_pred CcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCcccccccccCcccchhhhHHHHHHHHcCC--CCHHHHHHHH
Q 001733 558 GIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNS--TPDELNVHLI 635 (1019)
Q Consensus 558 G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~--~~~~v~~~a~ 635 (1019)
+.+..|...+.... +...++.+.-+....+..- + ...+.++++.+-.++.+. ..+.+|..|.
T Consensus 174 ~~l~~l~~ai~dk~----~~~~re~~~~a~~~~~~~L-g-----------~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~ 237 (569)
T KOG1242|consen 174 GFLDNLSKAIIDKK----SALNREAALLAFEAAQGNL-G-----------PPFEPYIVPILPSILTNFGDKINKVREAAV 237 (569)
T ss_pred hHHHHHHHHhcccc----hhhcHHHHHHHHHHHHHhc-C-----------CCCCchHHhhHHHHHHHhhccchhhhHHHH
Confidence 88888887776543 1233342222222222211 1 122355666655555542 5678888888
Q ss_pred HHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHhCcCCChhHHHHhhhcCCChhHhhcccCCC
Q 001733 636 RILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCPTET 715 (1019)
Q Consensus 636 ~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~~vr~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~LV~lL~~~ 715 (1019)
.+...+-..-.. .. ++ -.++.++.=+.......+.+++.+|..|.+..+......+. ..+|.|...|.+.
T Consensus 238 ~a~kai~~~~~~-~a-VK-----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp---~iiP~lsevl~DT 307 (569)
T KOG1242|consen 238 EAAKAIMRCLSA-YA-VK-----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLP---DLIPVLSEVLWDT 307 (569)
T ss_pred HHHHHHHHhcCc-ch-hh-----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHh---HhhHHHHHHHccC
Confidence 777766543332 11 11 12333333233335678899999999999766655444443 6899999999877
Q ss_pred CcChHHHHHHHHHHhccCC--CChhhHHHHHhCCChHHHHHHHHhhhccCCCccchhhhHHHHHHHHHHHHhcCCC-chh
Q 001733 716 IHITEKQAVSAKFLAKLPH--QNLTLNLALSARNVVPTILQTINLIQRSGTRTSRYASAYLEGLIGILVRFTTTLY-EPQ 792 (1019)
Q Consensus 716 ~~~~~~~~~A~~~L~nL~~--~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~lt~~~~-~~~ 792 (1019)
. .+++.++-.++-++.. .|+.+.. .+|.|+..+.+. .+ ....+...|..-|...+ ++.
T Consensus 308 ~--~evr~a~~~~l~~~~svidN~dI~~------~ip~Lld~l~dp----~~-------~~~e~~~~L~~ttFV~~V~~p 368 (569)
T KOG1242|consen 308 K--PEVRKAGIETLLKFGSVIDNPDIQK------IIPTLLDALADP----SC-------YTPECLDSLGATTFVAEVDAP 368 (569)
T ss_pred C--HHHHHHHHHHHHHHHHhhccHHHHH------HHHHHHHHhcCc----cc-------chHHHHHhhcceeeeeeecch
Confidence 6 6999999998888764 2333322 345666665432 11 11223333332222111 332
Q ss_pred HHHHHHhCCchHHHHHHHhcCCcHHHHHHHHHHHhhhcccCCcCCCCCCcCCcccccccccCcccccCCCCCCCCCCCcc
Q 001733 793 ILFLARTHNFTSVFTELLMKTSCDEVQKLAAIGLENLSSESINLSKPPQIKSKKFMKFFSLPKSLSVGSSKKKSVSLCPV 872 (1019)
Q Consensus 793 ~~~~~~~~g~i~~Lv~LL~~~~~~~vk~~AA~aL~nLs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~v 872 (1019)
.... ++|.|.+=|.. .+...++.++..+.|++.-..+ +..+.-|.
T Consensus 369 sLal-----mvpiL~R~l~e-Rst~~kr~t~~IidNm~~LveD---------p~~lapfl-------------------- 413 (569)
T KOG1242|consen 369 SLAL-----MVPILKRGLAE-RSTSIKRKTAIIIDNMCKLVED---------PKDLAPFL-------------------- 413 (569)
T ss_pred hHHH-----HHHHHHHHHhh-ccchhhhhHHHHHHHHHHhhcC---------HHHHhhhH--------------------
Confidence 2222 34667666666 6888999999999999864421 11100110
Q ss_pred cCCccccCccchhhhccchHHHHhhhccCchhhHHHHHHHHHhhhcc
Q 001733 873 HRGACSSQNTFCLIDAKAVDRLLACLYHENVEVVEAALSALCTLLDE 919 (1019)
Q Consensus 873 ~~~~cs~~~~~~Lv~~gai~~Lv~lL~~~d~~v~~~Al~AL~~L~~d 919 (1019)
-..++.|=..+...+|+++..|..||+.+..+
T Consensus 414 ---------------~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~ 445 (569)
T KOG1242|consen 414 ---------------PSLLPGLKENLDDAVPEVRAVAARALGALLER 445 (569)
T ss_pred ---------------HHHhhHHHHHhcCCChhHHHHHHHHHHHHHHH
Confidence 01245555556677899999999999988855
No 111
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.58 E-value=0.00011 Score=55.19 Aligned_cols=40 Identities=33% Similarity=0.380 Sum_probs=38.1
Q ss_pred ChhHHHHHHhcCCHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 001733 381 DDEGKEMIAETMDISILIKLLSSSHRPVRHESLLLLLELS 420 (1019)
Q Consensus 381 ~~~~k~~I~~~g~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls 420 (1019)
+++++..|++.|+||.|+.+|++++.++++.|+++|.||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999999999999997
No 112
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.57 E-value=0.022 Score=64.70 Aligned_cols=279 Identities=18% Similarity=0.190 Sum_probs=170.8
Q ss_pred CcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCcccccccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHHH
Q 001733 558 GIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRI 637 (1019)
Q Consensus 558 G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~a 637 (1019)
-.++.+++++.... ..++..|...+..+ .....++.+..++.. .++.++..|+.+
T Consensus 43 ~~~~~~~~~l~~~~-----~~vr~~aa~~l~~~-------------------~~~~av~~l~~~l~d-~~~~vr~~a~~a 97 (335)
T COG1413 43 EAADELLKLLEDED-----LLVRLSAAVALGEL-------------------GSEEAVPLLRELLSD-EDPRVRDAAADA 97 (335)
T ss_pred hhHHHHHHHHcCCC-----HHHHHHHHHHHhhh-------------------chHHHHHHHHHHhcC-CCHHHHHHHHHH
Confidence 35677777776542 36666666654432 235688999999999 899999999997
Q ss_pred HHHHhCCCCchHHHHHHHHHcCChHHHHHhhc-CCCHHHHHHHHHHHHHhCcCCChhHHHHhhhcCCChhHhhcccCCCC
Q 001733 638 LQCLTKSPKPMATIVSVIKETEASYSLLEVIN-NPHDELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCPTETI 716 (1019)
Q Consensus 638 L~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~-~~~~~vr~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~LV~lL~~~~ 716 (1019)
|..+-. ...++.|+.++. +++..+|..|.++|..+.. ...+..|+..+.+..
T Consensus 98 Lg~~~~--------------~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~-------------~~a~~~l~~~l~~~~ 150 (335)
T COG1413 98 LGELGD--------------PEAVPPLVELLENDENEGVRAAAARALGKLGD-------------ERALDPLLEALQDED 150 (335)
T ss_pred HHccCC--------------hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc-------------hhhhHHHHHHhccch
Confidence 776633 245778999898 5888999999999998874 234666777776544
Q ss_pred c----------ChHHHHHHHHHHhccCCCChhhHHHHHhCCChHHHHHHHHhhhccCCCccchhhhHHHHHHHHHHHHhc
Q 001733 717 H----------ITEKQAVSAKFLAKLPHQNLTLNLALSARNVVPTILQTINLIQRSGTRTSRYASAYLEGLIGILVRFTT 786 (1019)
Q Consensus 717 ~----------~~~~~~~A~~~L~nL~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~lt~ 786 (1019)
. ...++..++..|+.+.. ...++.+...+.+. ...+...+..+|..+..
T Consensus 151 ~~~a~~~~~~~~~~~r~~a~~~l~~~~~-----------~~~~~~l~~~l~~~----------~~~vr~~Aa~aL~~~~~ 209 (335)
T COG1413 151 SGSAAAALDAALLDVRAAAAEALGELGD-----------PEAIPLLIELLEDE----------DADVRRAAASALGQLGS 209 (335)
T ss_pred hhhhhhhccchHHHHHHHHHHHHHHcCC-----------hhhhHHHHHHHhCc----------hHHHHHHHHHHHHHhhc
Confidence 1 11345555555555543 12334444444321 11344445555555443
Q ss_pred CCCchhHHHHHHhCCchHHHHHHHhcCCcHHHHHHHHHHHhhhcccCCcCCCCCCcCCcccccccccCcccccCCCCCCC
Q 001733 787 TLYEPQILFLARTHNFTSVFTELLMKTSCDEVQKLAAIGLENLSSESINLSKPPQIKSKKFMKFFSLPKSLSVGSSKKKS 866 (1019)
Q Consensus 787 ~~~~~~~~~~~~~~g~i~~Lv~LL~~~~~~~vk~~AA~aL~nLs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (1019)
. + ..+.+.|...+.+ ++..++..++.+|+.+.
T Consensus 210 ~--~---------~~~~~~l~~~~~~-~~~~vr~~~~~~l~~~~------------------------------------ 241 (335)
T COG1413 210 E--N---------VEAADLLVKALSD-ESLEVRKAALLALGEIG------------------------------------ 241 (335)
T ss_pred c--h---------hhHHHHHHHHhcC-CCHHHHHHHHHHhcccC------------------------------------
Confidence 1 1 2445667777777 77777777777765442
Q ss_pred CCCCcccCCccccCccchhhhccchHHHHhhhccCchhhHHHHHHHHHhhhccCcchhhHHHHHHhccchHHHHHHHhhc
Q 001733 867 VSLCPVHRGACSSQNTFCLIDAKAVDRLLACLYHENVEVVEAALSALCTLLDEKVDVDKSVSMLSEVNAIQHVLNVVKEH 946 (1019)
Q Consensus 867 ~~~c~v~~~~cs~~~~~~Lv~~gai~~Lv~lL~~~d~~v~~~Al~AL~~L~~d~~~~~~~~~~i~~~~~i~~l~~lL~~~ 946 (1019)
...++.+|+..+.+.+..+...+..++.. .. -......+...+. +
T Consensus 242 --------------------~~~~~~~l~~~l~~~~~~~~~~~~~~~~~---~~-----------~~~~~~~l~~~~~-~ 286 (335)
T COG1413 242 --------------------DEEAVDALAKALEDEDVILALLAAAALGA---LD-----------LAEAALPLLLLLI-D 286 (335)
T ss_pred --------------------cchhHHHHHHHHhccchHHHHHHHHHhcc---cC-----------chhhHHHHHHHhh-c
Confidence 12247777777777777777666665551 11 0122344555555 5
Q ss_pred ChhhHHHHHHHHHHHHHhhCCccccccccccccchHHHHHHhhcCCchhhHHHHHHHHH
Q 001733 947 RQEVLQQKSFWMIERFLVKGGNKQASDISQDRLLPATLVSAFHHGDVNTRQMAEKILRH 1005 (1019)
Q Consensus 947 ~~~~~~~~A~~aL~~i~~~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~~L~~ 1005 (1019)
.+..+...+..++..+... ....++.-...+++...+..+...+..
T Consensus 287 ~~~~~~~~~~~~l~~~~~~-------------~~~~a~~~~~~~~~~~~~~~~~~~~~~ 332 (335)
T COG1413 287 EANAVRLEAALALGQIGQE-------------KAVAALLLALEDGDADVRKAALILLEG 332 (335)
T ss_pred chhhHHHHHHHHHHhhccc-------------chHHHHHHHhcCCchhhHHHHHHHHHh
Confidence 6677777777777666543 112346666777777777666665543
No 113
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=97.57 E-value=0.00055 Score=63.82 Aligned_cols=122 Identities=12% Similarity=0.055 Sum_probs=102.8
Q ss_pred CChHHHHHHhh-cCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHhcCCChhHHHHHHHHHHHhccChhhhhh
Q 001733 350 GVLPLLTKLLE-YKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSSHRPVRHESLLLLLELSSTRSLCEK 428 (1019)
Q Consensus 350 g~i~~Lv~lL~-s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~~~~~~~ 428 (1019)
|.+..||.-.. ..+.+.++..+.-|.|++ .++-|...+.+..+++.++..|...+....+.++..|+|+|.++.+++.
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFA-YDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~ 94 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFA-YDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKF 94 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhc-cCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHH
Confidence 45666776555 468899999999999998 8999999999999999999999999999999999999999999999999
Q ss_pred hhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCC-chHHHHh
Q 001733 429 IGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPD-NIKCMAE 475 (1019)
Q Consensus 429 i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~-n~~~i~~ 475 (1019)
|.. .+++|.++..++ +....+...|+.+|..|+.... .+..+..
T Consensus 95 I~e-a~g~plii~~ls--sp~e~tv~sa~~~l~~l~~~~Rt~r~ell~ 139 (173)
T KOG4646|consen 95 IRE-ALGLPLIIFVLS--SPPEITVHSAALFLQLLEFGERTERDELLS 139 (173)
T ss_pred HHH-hcCCceEEeecC--CChHHHHHHHHHHHHHhcCcccchhHHhcc
Confidence 975 999999999985 4456678888999999986443 3444443
No 114
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=0.0074 Score=68.94 Aligned_cols=318 Identities=18% Similarity=0.183 Sum_probs=200.9
Q ss_pred hcCChHHHHHHhhcCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHhcCCChhHHHHHHHHHHHhccChhhhh
Q 001733 348 NVGVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSSHRPVRHESLLLLLELSSTRSLCE 427 (1019)
Q Consensus 348 ~~g~i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~~~~~~ 427 (1019)
-++.+|+.+..+.+.|..+|..|+..|.|+++.- ..............+.++-...+..+ ..++..|-.|-.+--.-.
T Consensus 82 ~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~-k~~v~~~Fn~iFdvL~klsaDsd~~V-~~~aeLLdRLikdIVte~ 159 (675)
T KOG0212|consen 82 LEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVA-KGEVLVYFNEIFDVLCKLSADSDQNV-RGGAELLDRLIKDIVTES 159 (675)
T ss_pred HHHhhHHHHHhccCccceeeeHhHHHHHHHHHHh-ccCcccchHHHHHHHHHHhcCCcccc-ccHHHHHHHHHHHhcccc
Confidence 3567899999999999999999999999998421 11111111223334444444444444 455566655533210000
Q ss_pred h-hhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHHHhcCChHHHHHHhccCCHHHHHHHHH----HHH
Q 001733 428 K-IGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMAS----YLG 502 (1019)
Q Consensus 428 ~-i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~----~L~ 502 (1019)
. -....+.||.|-.-+. ..+|.++.....-|.-|-..++-...=.-...++-|..+|.+.+++++..+-. .|.
T Consensus 160 ~~tFsL~~~ipLL~eriy--~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~ 237 (675)
T KOG0212|consen 160 ASTFSLPEFIPLLRERIY--VINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLA 237 (675)
T ss_pred ccccCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 0 1122445555555553 45778888888888877655543211111245667788899999988865555 455
Q ss_pred HhccCcccccccccchHHHHHHHHhcCChHHHHHHHHHHHHhhcCCcchHHHHHcCcHHHHHHHHhhhccCCCChhHHHH
Q 001733 503 EIVLGHDSKINVPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEE 582 (1019)
Q Consensus 503 ~La~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~ 582 (1019)
.+.+.|.+-. ....++.++.-+.++++.++..|+.-+.....-.+..-...-.|++..++..+.+.. +..+++.
T Consensus 238 eI~s~P~s~d--~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e----~~~i~~~ 311 (675)
T KOG0212|consen 238 EIRSSPSSMD--YDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTE----EMSIKEY 311 (675)
T ss_pred HHhcCccccC--cccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCc----cccHHHH
Confidence 5555554320 113678899999999999999999988888877665444455777777776665432 2345555
Q ss_pred HHHH---HHHHHhcCCCcccccccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcC
Q 001733 583 AAAI---LANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETE 659 (1019)
Q Consensus 583 A~~~---L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g 659 (1019)
|..+ |..+.......+ .+.-..++..|...+.. ...+.+..++.-+..+-...++ + + ...-..
T Consensus 312 a~~~n~~l~~l~s~~~~~~---------~id~~~ii~vl~~~l~~-~~~~tri~~L~Wi~~l~~~~p~-q-l--~~h~~~ 377 (675)
T KOG0212|consen 312 AQMVNGLLLKLVSSERLKE---------EIDYGSIIEVLTKYLSD-DREETRIAVLNWIILLYHKAPG-Q-L--LVHNDS 377 (675)
T ss_pred HHHHHHHHHHHHhhhhhcc---------ccchHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHhhCcc-h-h--hhhccH
Confidence 4432 444554433222 23445688889999988 8889998888888777654443 1 1 122345
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhCcC
Q 001733 660 ASYSLLEVINNPHDELAVAAIKLLTTLSPY 689 (1019)
Q Consensus 660 ~i~~Lv~LL~~~~~~vr~~A~~~L~~Ls~~ 689 (1019)
..+.|+.-|.++++++...++.++.+++..
T Consensus 378 if~tLL~tLsd~sd~vvl~~L~lla~i~~s 407 (675)
T KOG0212|consen 378 IFLTLLKTLSDRSDEVVLLALSLLASICSS 407 (675)
T ss_pred HHHHHHHhhcCchhHHHHHHHHHHHHHhcC
Confidence 667888889999999999999999999954
No 115
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=1.7e-05 Score=84.72 Aligned_cols=69 Identities=22% Similarity=0.327 Sum_probs=58.8
Q ss_pred CCCCccccccCcccCCCceec-CCCccccHHHHHHHHhhhccCCCCCCCCCCCCCC-CCCCccCHhHHHHHHHHH
Q 001733 229 PLYETFYCPLTKEIMDDPVTI-ESGVTYERNAITAWFEKFETSGDIFCPTTGKKLM-SRGLNTNVALKTTIEEWK 301 (1019)
Q Consensus 229 ~~~~~~~Cpi~~~~m~dPv~~-~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~-~~~l~pn~~Lr~~I~~w~ 301 (1019)
.+--+|.||||+++++-..++ .|+|.||+.||-+-+.+ ++..||.|++.+. ..+|.+......+|.+.-
T Consensus 39 ~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~----gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i~ 109 (381)
T KOG0311|consen 39 MFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRS----GNNECPTCRKKLVSKRSLRIDPNFDALISKIY 109 (381)
T ss_pred HhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh----cCCCCchHHhhccccccCCCCccHHHHHHHHh
Confidence 356789999999999999988 99999999999999998 7889999999985 457887777777776643
No 116
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.52 E-value=8.1e-05 Score=80.18 Aligned_cols=54 Identities=20% Similarity=0.385 Sum_probs=42.3
Q ss_pred CccccccCccc-CCCce---ec-CCCccccHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCcc
Q 001733 232 ETFYCPLTKEI-MDDPV---TI-ESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNT 289 (1019)
Q Consensus 232 ~~~~Cpi~~~~-m~dPv---~~-~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~~~~l~p 289 (1019)
++-.||+|..- ...|- ++ +|||+||++||..+|.. +...||.|+.++....+.|
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~----~~~~CP~C~~~lrk~~fr~ 60 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR----GSGSCPECDTPLRKNNFRV 60 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcC----CCCCCCCCCCccchhhccc
Confidence 45689999983 44553 33 79999999999999987 5678999999988766443
No 117
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.51 E-value=0.015 Score=69.42 Aligned_cols=337 Identities=16% Similarity=0.118 Sum_probs=189.8
Q ss_pred cCChHHHHHHhhcCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHhcCCChhHHHHHHHHHHHhccChhhhhh
Q 001733 349 VGVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSSHRPVRHESLLLLLELSSTRSLCEK 428 (1019)
Q Consensus 349 ~g~i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~~~~~~~ 428 (1019)
.+++..+++=.++.++.+|..|++.++.+- .+..- .-...++.+.++++++.+|..|+....++-..+. .
T Consensus 85 ~~avnt~~kD~~d~np~iR~lAlrtm~~l~--v~~i~-----ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~ 154 (734)
T KOG1061|consen 85 ILAVNTFLKDCEDPNPLIRALALRTMGCLR--VDKIT-----EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---D 154 (734)
T ss_pred HhhhhhhhccCCCCCHHHHHHHhhceeeEe--ehHHH-----HHHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---h
Confidence 456777777777889999999999888874 22211 2346789999999999999999988888755432 2
Q ss_pred hhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCc--hHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 001733 429 IGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDN--IKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVL 506 (1019)
Q Consensus 429 i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n--~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~ 506 (1019)
++...|.++.|..++. .++|.+..+|..+|..+...+.+ ...+ ..-.+..++..|...++..+......|.+-.-
T Consensus 155 ~~~~~gl~~~L~~ll~--D~~p~VVAnAlaaL~eI~e~~~~~~~~~l-~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p 231 (734)
T KOG1061|consen 155 LVEDSGLVDALKDLLS--DSNPMVVANALAALSEIHESHPSVNLLEL-NPQLINKLLEALNECTEWGQIFILDCLAEYVP 231 (734)
T ss_pred hccccchhHHHHHHhc--CCCchHHHHHHHHHHHHHHhCCCCCcccc-cHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCC
Confidence 2345899999999995 67889999999999999754432 1111 11122334444444444444444444333222
Q ss_pred CcccccccccchHHHHHHHHhcCChHHHHHHHHHHHHhhcCCcchHHHHHcCcHHHHHHHHhhhc---------------
Q 001733 507 GHDSKINVPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRI--------------- 571 (1019)
Q Consensus 507 ~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~~~~l~~~G~v~~Lv~lL~~~~--------------- 571 (1019)
.+. + =....+..+...|.+.+..+.-.+..++.++..........+-.-.-++|+.++....
T Consensus 232 ~d~-~--ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~e~qyvaLrNi~lil~ 308 (734)
T KOG1061|consen 232 KDS-R--EAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSESEIQYVALRNINLILQ 308 (734)
T ss_pred CCc-h--hHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccchhhHHHHhhHHHHHH
Confidence 111 0 0111233444444444444444444444444433322222222223333333332211
Q ss_pred ---------------cCCCChhHHHHHHHHHHHHHhcCCCcccccccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHH
Q 001733 572 ---------------IHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIR 636 (1019)
Q Consensus 572 ---------------~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~ 636 (1019)
.-..|.-++..=..++..++.... + ..++..|...-.. -+.+.-..+++
T Consensus 309 ~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~n----l-----------~qvl~El~eYate-vD~~fvrkaIr 372 (734)
T KOG1061|consen 309 KRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDAN----L-----------AQVLAELKEYATE-VDVDFVRKAVR 372 (734)
T ss_pred hChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhH----H-----------HHHHHHHHHhhhh-hCHHHHHHHHH
Confidence 001223333333333333332210 0 1133333333333 56777888999
Q ss_pred HHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHhCcCCChhHHHHhhhcCCChhHhhcccCCCC
Q 001733 637 ILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCPTETI 716 (1019)
Q Consensus 637 aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~~vr~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~LV~lL~~~~ 716 (1019)
++..++..-.. ..+++..|+++++..-..+...+...++.+-++.++.. + ..+..|...+.+=+
T Consensus 373 aig~~aik~e~---------~~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~-~------~vv~~l~~~~~sl~ 436 (734)
T KOG1061|consen 373 AIGRLAIKAEQ---------SNDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKY-E------SVVAILCENLDSLQ 436 (734)
T ss_pred Hhhhhhhhhhh---------hhhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCch-h------hhhhhhcccccccC
Confidence 99998764322 25889999999998888777788888888876554432 1 12233333333333
Q ss_pred cChHHHHHHHHHHhccCC
Q 001733 717 HITEKQAVSAKFLAKLPH 734 (1019)
Q Consensus 717 ~~~~~~~~A~~~L~nL~~ 734 (1019)
.++.+.+-.|+|+.-+.
T Consensus 437 -epeak~amiWilg~y~~ 453 (734)
T KOG1061|consen 437 -EPEAKAALIWILGEYAE 453 (734)
T ss_pred -ChHHHHHHHHHHhhhhh
Confidence 46788888888887654
No 118
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=97.43 E-value=0.00087 Score=62.55 Aligned_cols=130 Identities=15% Similarity=0.084 Sum_probs=110.1
Q ss_pred cchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCccccc
Q 001733 433 PGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDSKI 512 (1019)
Q Consensus 433 ~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~ 512 (1019)
.+-+..||.-.. ...+.++++....-|.|.+.++-|-..+.+..+++.++..|...++.+++-+.+.|+|+|.++.++.
T Consensus 15 l~Ylq~LV~efq-~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~ 93 (173)
T KOG4646|consen 15 LEYLQHLVDEFQ-TTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAK 93 (173)
T ss_pred HHHHHHHHHHHH-HhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHH
Confidence 456677777765 4567889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc-chHHHHHHHHhcCChHHHHHHHHHHHHhhcCCc-chHHHHHcCcHHHH
Q 001733 513 NVPG-RAASTLIRMVHSGNSLTRRIAFKALMQISSHHP-SCKILVEAGIVQVM 563 (1019)
Q Consensus 513 ~i~~-~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~-~~~~l~~~G~v~~L 563 (1019)
-|.+ +|+|..+..+.++.......|+.+|..|+-... .+..+...-++..+
T Consensus 94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v 146 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTV 146 (173)
T ss_pred HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHH
Confidence 9988 589999999999888889999999999996654 36666554444433
No 119
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.42 E-value=0.088 Score=60.43 Aligned_cols=356 Identities=11% Similarity=0.063 Sum_probs=197.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHhhcCCcchHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCcccccc
Q 001733 523 IRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQV 602 (1019)
Q Consensus 523 v~lL~~~~~~~~~~A~~aL~~Ls~~~~~~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v 602 (1019)
++-|.+..|+....|+..+..++.-.- -.|.-|-|+..+...--+..|...+..+..++.++|.+..... .
T Consensus 100 l~aL~s~epr~~~~Aaql~aaIA~~El------p~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~-l-- 170 (858)
T COG5215 100 LRALKSPEPRFCTMAAQLLAAIARMEL------PNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPED-L-- 170 (858)
T ss_pred HHHhcCCccHHHHHHHHHHHHHHHhhC------ccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHH-H--
Confidence 345667778888888888888875431 1355666666565443344677889999999999988754311 1
Q ss_pred cccCcccchhhhHH-HHHHHHcCCCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHH----cCChHHHHHhhcCCCHHHHH
Q 001733 603 NSHGHTMVSDYVVY-NIIYMLKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKE----TEASYSLLEVINNPHDELAV 677 (1019)
Q Consensus 603 ~~~g~~l~~~~~i~-~Ll~LL~~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~----~g~i~~Lv~LL~~~~~~vr~ 677 (1019)
.-.+..++. ....-+++.++..+|-.++.+|+.=+. -++..+.. .-.++...+..++++.+++.
T Consensus 171 -----i~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~------fv~~nf~~E~erNy~mqvvceatq~~d~e~q~ 239 (858)
T COG5215 171 -----IQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLM------FVQGNFCYEEERNYFMQVVCEATQGNDEELQH 239 (858)
T ss_pred -----HHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHH------HHHHhhcchhhhchhheeeehhccCCcHHHHH
Confidence 001122222 223344554778899999999987222 11111111 12234445677888999999
Q ss_pred HHHHHHHHhCcCCChhHHHHhhhcCCChh-HhhcccCCCCcChHHHHHHHHHHhccCCCChhhHHHHH------------
Q 001733 678 AAIKLLTTLSPYLGHTLVERLCKTRGQPE-NLIQCPTETIHITEKQAVSAKFLAKLPHQNLTLNLALS------------ 744 (1019)
Q Consensus 678 ~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~-~LV~lL~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~l~------------ 744 (1019)
+|-.+|..+-.-...-+.-.+. +.+- ...+.+++.+ +++...|+..-+.+.....+..-.+.
T Consensus 240 aafgCl~kim~LyY~fm~~ymE---~aL~alt~~~mks~n--d~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~f 314 (858)
T COG5215 240 AAFGCLNKIMMLYYKFMQSYME---NALAALTGRFMKSQN--DEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGF 314 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhcCcc--hHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcch
Confidence 9988887665211111111121 2222 2334454443 57777777655444332111111111
Q ss_pred ----hCCChHHHHHHHHhhhccCCCccchhhhHHHHHHH-HHHHHhcCCCchhHHHHHHhCCchHHHHHHHhcCCcHHHH
Q 001733 745 ----ARNVVPTILQTINLIQRSGTRTSRYASAYLEGLIG-ILVRFTTTLYEPQILFLARTHNFTSVFTELLMKTSCDEVQ 819 (1019)
Q Consensus 745 ----~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~-aL~~lt~~~~~~~~~~~~~~~g~i~~Lv~LL~~~~~~~vk 819 (1019)
-+.++|.|++||... +. ....+.|-...+++ .|.-|+..-.|.-.+. ++.-+-+-+++ +++.-+
T Consensus 315 a~aav~dvlP~lL~LL~~q--~e--d~~~DdWn~smaA~sCLqlfaq~~gd~i~~p------Vl~FvEqni~~-~~w~nr 383 (858)
T COG5215 315 ARAAVADVLPELLSLLEKQ--GE--DYYGDDWNPSMAASSCLQLFAQLKGDKIMRP------VLGFVEQNIRS-ESWANR 383 (858)
T ss_pred HHHHHHHHHHHHHHHHHhc--CC--CccccccchhhhHHHHHHHHHHHhhhHhHHH------HHHHHHHhccC-chhhhH
Confidence 134789999999741 11 11123454444444 3444543211111111 12222233455 778888
Q ss_pred HHHHHHHhhhcccCCcCCCCCCcCCcccccccccCcccccCCCCCCCCCCCcccCCccccCccchhhhccchHHHHhhhc
Q 001733 820 KLAAIGLENLSSESINLSKPPQIKSKKFMKFFSLPKSLSVGSSKKKSVSLCPVHRGACSSQNTFCLIDAKAVDRLLACLY 899 (1019)
Q Consensus 820 ~~AA~aL~nLs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~v~~~~cs~~~~~~Lv~~gai~~Lv~lL~ 899 (1019)
..|+.|++..-.+.. + -|+. . + -..+++.+.....
T Consensus 384 eaavmAfGSvm~gp~---------~----~~lT------------------------------~-~-V~qalp~i~n~m~ 418 (858)
T COG5215 384 EAAVMAFGSVMHGPC---------E----DCLT------------------------------K-I-VPQALPGIENEMS 418 (858)
T ss_pred HHHHHHhhhhhcCcc---------H----HHHH------------------------------h-h-HHhhhHHHHHhcc
Confidence 888888876543221 0 0111 0 1 1347888899888
Q ss_pred cCchhhHHHHHHHHHhhhccCcchhhHHHHHHhccchHHHHHHHhh--cChhhHHHHHHHHHHHHHhh
Q 001733 900 HENVEVVEAALSALCTLLDEKVDVDKSVSMLSEVNAIQHVLNVVKE--HRQEVLQQKSFWMIERFLVK 965 (1019)
Q Consensus 900 ~~d~~v~~~Al~AL~~L~~d~~~~~~~~~~i~~~~~i~~l~~lL~~--~~~~~~~~~A~~aL~~i~~~ 965 (1019)
++--.|...++.+++.++ |. ....|..+|-+++.+..... ...+..-.++.|.++++..+
T Consensus 419 D~~l~vk~ttAwc~g~ia-d~-----va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h 480 (858)
T COG5215 419 DSCLWVKSTTAWCFGAIA-DH-----VAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDH 480 (858)
T ss_pred cceeehhhHHHHHHHHHH-HH-----HHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHh
Confidence 888999999999999988 32 23455556666664443220 13577888899999888766
No 120
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.38 E-value=0.0007 Score=60.29 Aligned_cols=87 Identities=25% Similarity=0.302 Sum_probs=69.6
Q ss_pred hHHHHHHH-hcCCcHHHHHHHHHHHhhhcccCCcCCCCCCcCCcccccccccCcccccCCCCCCCCCCCcccCCccccCc
Q 001733 803 TSVFTELL-MKTSCDEVQKLAAIGLENLSSESINLSKPPQIKSKKFMKFFSLPKSLSVGSSKKKSVSLCPVHRGACSSQN 881 (1019)
Q Consensus 803 i~~Lv~LL-~~~~~~~vk~~AA~aL~nLs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~v~~~~cs~~~ 881 (1019)
||.|++.| ++ +++.+|..|+.+|+++-
T Consensus 1 i~~L~~~l~~~-~~~~vr~~a~~~L~~~~--------------------------------------------------- 28 (88)
T PF13646_consen 1 IPALLQLLQND-PDPQVRAEAARALGELG--------------------------------------------------- 28 (88)
T ss_dssp HHHHHHHHHTS-SSHHHHHHHHHHHHCCT---------------------------------------------------
T ss_pred CHHHHHHHhcC-CCHHHHHHHHHHHHHcC---------------------------------------------------
Confidence 57899999 66 89999999999997441
Q ss_pred cchhhhccchHHHHhhhccCchhhHHHHHHHHHhhhccCcchhhHHHHHHhccchHHHHHHHhhcChhhHHHHHHHHHH
Q 001733 882 TFCLIDAKAVDRLLACLYHENVEVVEAALSALCTLLDEKVDVDKSVSMLSEVNAIQHVLNVVKEHRQEVLQQKSFWMIE 960 (1019)
Q Consensus 882 ~~~Lv~~gai~~Lv~lL~~~d~~v~~~Al~AL~~L~~d~~~~~~~~~~i~~~~~i~~l~~lL~~~~~~~~~~~A~~aL~ 960 (1019)
...+++.|+++|+++|+.|+..|+.||..+.. ..+++.|.+++....+..+++.|.++|.
T Consensus 29 -----~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--------------~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 29 -----DPEAIPALIELLKDEDPMVRRAAARALGRIGD--------------PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -----HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--------------HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -----CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------------HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 12369999999999999999999999998751 2467888898984455667898988873
No 121
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.023 Score=67.39 Aligned_cols=301 Identities=10% Similarity=0.080 Sum_probs=177.3
Q ss_pred hHHHHHHhhcCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHhcCCChhHHHHHHHHHHHhcc-Chhhhhhhh
Q 001733 352 LPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSSHRPVRHESLLLLLELSS-TRSLCEKIG 430 (1019)
Q Consensus 352 i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~-~~~~~~~i~ 430 (1019)
|..+=+-|+++++.+|..|+.+|..+ |..++..=.+-.+-+.....++-+|..||-+|-.|-. .++.+.++
T Consensus 110 IntfQk~L~DpN~LiRasALRvlSsI-------Rvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL- 181 (968)
T KOG1060|consen 110 INTFQKALKDPNQLIRASALRVLSSI-------RVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQL- 181 (968)
T ss_pred HHHHHhhhcCCcHHHHHHHHHHHHhc-------chhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHH-
Confidence 45555667788888888888887655 2223222233344455667778899999998888844 44544443
Q ss_pred cccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCccc
Q 001733 431 SIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDS 510 (1019)
Q Consensus 431 ~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~ 510 (1019)
+..+=.||. ..++-+.-.|+.+.-..|- ++..++ .+-...|.++|.+-++..|.-+...|..-|.+.--
T Consensus 182 -----~e~I~~LLa--D~splVvgsAv~AF~evCP---erldLI-HknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~ 250 (968)
T KOG1060|consen 182 -----EEVIKKLLA--DRSPLVVGSAVMAFEEVCP---ERLDLI-HKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLP 250 (968)
T ss_pred -----HHHHHHHhc--CCCCcchhHHHHHHHHhch---hHHHHh-hHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCC
Confidence 233334453 4567778888888877663 222222 24556778888777777777777777766642111
Q ss_pred cc-------------------------ccc-cchHHHHH----HHHhcCChHHHHHHHHHHHHhhcCCcchHHHHHcCcH
Q 001733 511 KI-------------------------NVP-GRAASTLI----RMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIV 560 (1019)
Q Consensus 511 ~~-------------------------~i~-~~~i~~Lv----~lL~~~~~~~~~~A~~aL~~Ls~~~~~~~~l~~~G~v 560 (1019)
+. -+. ..-+..|+ .+|.+.++.+...++.+.+.|+...+. .+++
T Consensus 251 ~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~------~~i~ 324 (968)
T KOG1060|consen 251 DPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQV------TKIA 324 (968)
T ss_pred CccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHH------HHHH
Confidence 10 000 10122333 356677889999999999999965433 3457
Q ss_pred HHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCC-----cccccccccC------------cccchh----hhHHHHH
Q 001733 561 QVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLE-----HHSLQVNSHG------------HTMVSD----YVVYNII 619 (1019)
Q Consensus 561 ~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~-----~~~~~v~~~g------------~~l~~~----~~i~~Ll 619 (1019)
.+|+.+|+++. .+|......+..++..... ...+.+-... ..+..+ .+++.|.
T Consensus 325 kaLvrLLrs~~------~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q 398 (968)
T KOG1060|consen 325 KALVRLLRSNR------EVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQ 398 (968)
T ss_pred HHHHHHHhcCC------cchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHH
Confidence 88889888653 4444444444444332110 0011110000 011112 2333344
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHhCcCCCh
Q 001733 620 YMLKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTLSPYLGH 692 (1019)
Q Consensus 620 ~LL~~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~~vr~~A~~~L~~Ls~~~~~ 692 (1019)
..++. .+-.+-..++.+|..++...... ...++..|+.|+++.+..|...++..+..|-...+.
T Consensus 399 ~YI~s-~d~~faa~aV~AiGrCA~~~~sv--------~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~ 462 (968)
T KOG1060|consen 399 TYIKS-SDRSFAAAAVKAIGRCASRIGSV--------TDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPA 462 (968)
T ss_pred HHHhc-CchhHHHHHHHHHHHHHHhhCch--------hhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChH
Confidence 44554 45456677777887777644331 236788899999999999999998888888754443
No 122
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.34 E-value=0.21 Score=57.56 Aligned_cols=455 Identities=12% Similarity=0.101 Sum_probs=239.7
Q ss_pred cCCHHHHHHHHHHHHHHHh---c---ccccchHHHhcCChHHHHHHhhcCCHHHHHHHHHHHHhhccCChhHHHHHHhcC
Q 001733 319 AGSDRMVLEAIKDLQTVCQ---R---KQYNKVQVRNVGVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETM 392 (1019)
Q Consensus 319 ~~~~~~~~~Al~~L~~l~~---~---~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g 392 (1019)
..+...++.|+..|.+-+. + ++.+|..+ ....+..-.+.|.++|..|..+|..+-.-.-+.-..+.+.-
T Consensus 189 et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~-----mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~a 263 (858)
T COG5215 189 ETTSAVRLAALKALMDSLMFVQGNFCYEEERNYF-----MQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENA 263 (858)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhhcchhhhchh-----heeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556667776665221 1 12223222 23345666788999999999999987644444444555555
Q ss_pred CHHHHHHHhcCCChhHHHHHHHHHHHhccCh-h----hhh-----------hhhcccchHHHHHHhhhcCCCC-----hH
Q 001733 393 DISILIKLLSSSHRPVRHESLLLLLELSSTR-S----LCE-----------KIGSIPGGILVLITFKFNWSID-----VF 451 (1019)
Q Consensus 393 ~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~~-~----~~~-----------~i~~~~g~I~~LV~lL~~~~~~-----~~ 451 (1019)
.-....+.+++.+.++...|+..-..++..+ + .+. ........+|.|.+||.+..+| -.
T Consensus 264 L~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn 343 (858)
T COG5215 264 LAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWN 343 (858)
T ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccc
Confidence 5556678888888888888887765555421 0 000 0111245789999999753333 23
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHhcCChHHHHHH----hccCCHHHHHHHHHHHHHhccC--cccccccccchHHHHHHH
Q 001733 452 AAEIADQILRNLERNPDNIKCMAENGLLEPLMHH----LNEGSEEIQMEMASYLGEIVLG--HDSKINVPGRAASTLIRM 525 (1019)
Q Consensus 452 ~~~~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~l----L~~~~~~~~~~aa~~L~~La~~--~~~~~~i~~~~i~~Lv~l 525 (1019)
....|..+|.-.+....+ . .+.+.+.+ +++++-.-++.++.+++.+-.. ...+..++..++|.+..+
T Consensus 344 ~smaA~sCLqlfaq~~gd--~-----i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~ 416 (858)
T COG5215 344 PSMAASSCLQLFAQLKGD--K-----IMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENE 416 (858)
T ss_pred hhhhHHHHHHHHHHHhhh--H-----hHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHh
Confidence 444555555433332222 1 23333443 3455666777888898887653 345566666788999998
Q ss_pred HhcCChHHHHHHHHHHHHhhcCCcchHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCccccccccc
Q 001733 526 VHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSH 605 (1019)
Q Consensus 526 L~~~~~~~~~~A~~aL~~Ls~~~~~~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~ 605 (1019)
+.+...-+++.++++++.++.+-.. .+-..|-+++.+.-....-.+ .+....++.|...|++..-....+ +-
T Consensus 417 m~D~~l~vk~ttAwc~g~iad~va~--~i~p~~Hl~~~vsa~liGl~D--~p~~~~ncsw~~~nlv~h~a~a~~----~~ 488 (858)
T COG5215 417 MSDSCLWVKSTTAWCFGAIADHVAM--IISPCGHLVLEVSASLIGLMD--CPFRSINCSWRKENLVDHIAKAVR----EV 488 (858)
T ss_pred cccceeehhhHHHHHHHHHHHHHHH--hcCccccccHHHHHHHhhhhc--cchHHhhhHHHHHhHHHhhhhhhc----cc
Confidence 8887888999999999999875321 222355555544433322122 136668889999998875322110 00
Q ss_pred Ccccch--hhhHHHHHHHHcCC-CCHHHHHHHHHHHHHHhCCC-CchHHHHH----HH-HH-cCChHHHHHhhcCCC---
Q 001733 606 GHTMVS--DYVVYNIIYMLKNS-TPDELNVHLIRILQCLTKSP-KPMATIVS----VI-KE-TEASYSLLEVINNPH--- 672 (1019)
Q Consensus 606 g~~l~~--~~~i~~Ll~LL~~~-~~~~v~~~a~~aL~~La~~~-~~~~~i~~----~i-~~-~g~i~~Lv~LL~~~~--- 672 (1019)
-..+.. ..++..|++--... .....|..+..+|..|-... ....++.. .+ .+ ...+..+-+.+...+
T Consensus 489 ~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~ 568 (858)
T COG5215 489 ESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLL 568 (858)
T ss_pred cchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 011111 12333333321110 23445555555555443222 11111110 00 00 122333333333332
Q ss_pred -HHHHHHHHHHHHHhCcCCChhHHHHhhhcCCChhHhhcccCCCCcChHHHHHHHHHHhccCCCCh-hhHHHHHhCCChH
Q 001733 673 -DELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCPTETIHITEKQAVSAKFLAKLPHQNL-TLNLALSARNVVP 750 (1019)
Q Consensus 673 -~~vr~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~LV~lL~~~~~~~~~~~~A~~~L~nL~~~~~-~~~~~l~~~g~l~ 750 (1019)
++++.+-+..|..+-+..+..+.. .. ...++.++++|.+.+ .+.+......+++++...-. ...+ .-...+|
T Consensus 569 ~~elqSN~~~vl~aiir~~~~~ie~-v~--D~lm~Lf~r~les~~-~t~~~~dV~~aIsal~~sl~e~Fe~--y~~~fiP 642 (858)
T COG5215 569 VEELQSNYIGVLEAIIRTRRRDIED-VE--DQLMELFIRILESTK-PTTAFGDVYTAISALSTSLEERFEQ--YASKFIP 642 (858)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccc-HH--HHHHHHHHHHHhccC-CchhhhHHHHHHHHHHHHHHHHHHH--HHhhhhH
Confidence 466666666665554322221111 11 124577888887775 24444445555555543111 1111 1235667
Q ss_pred HHHHHHHhhhccCCCccchhhhHHHHHHHHHHHHhcCCCchhHHHHHHhCCchHHHHHHHhc
Q 001733 751 TILQTINLIQRSGTRTSRYASAYLEGLIGILVRFTTTLYEPQILFLARTHNFTSVFTELLMK 812 (1019)
Q Consensus 751 ~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~lt~~~~~~~~~~~~~~~g~i~~Lv~LL~~ 812 (1019)
.+.+-|+. +...+...++|.+..++... +.+.....- .....|++.|++
T Consensus 643 yl~~aln~----------~d~~v~~~avglvgdlantl-~~df~~y~d--~~ms~LvQ~lss 691 (858)
T COG5215 643 YLTRALNC----------TDRFVLNSAVGLVGDLANTL-GTDFNIYAD--VLMSSLVQCLSS 691 (858)
T ss_pred HHHHHhcc----------hhHHHHHHHHHHHHHHHHHh-hhhHHHHHH--HHHHHHHHHhcC
Confidence 77776642 23345566777777777543 333322221 345677777776
No 123
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=0.047 Score=60.95 Aligned_cols=242 Identities=16% Similarity=0.212 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHHHhcccccchHHHhcCChHHHHHHhhcCCHHHHHHHHHHHHhhccCC-----hhH----HHHHHhcCCH
Q 001733 324 MVLEAIKDLQTVCQRKQYNKVQVRNVGVLPLLTKLLEYKDRNVRCAAMELLRQLVVED-----DEG----KEMIAETMDI 394 (1019)
Q Consensus 324 ~~~~Al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~-----~~~----k~~I~~~g~i 394 (1019)
+.-..++++..++.- |.---.+.+.++++.|+.+|.+.+.++-...+..|..|.-.+ ++. -..+++.+.+
T Consensus 100 dLhd~IQ~mhvlAt~-PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vl 178 (536)
T KOG2734|consen 100 DLHDIIQEMHVLATM-PDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVL 178 (536)
T ss_pred cHHHHHHHHHhhhcC-hHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHH
Confidence 344566777766655 333345678899999999999999999999999999987322 122 2345678899
Q ss_pred HHHHHHhcCCCh------hHHHHHHHHHHHhcc-ChhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcC-C
Q 001733 395 SILIKLLSSSHR------PVRHESLLLLLELSS-TRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLER-N 466 (1019)
Q Consensus 395 ~~Lv~lL~~~~~------~~r~~Aa~~L~~Ls~-~~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~-~ 466 (1019)
+.|+.-+..=+. ....++.+.+-|+.. .++.+..+.. .|.+.-|..-+.....-..-...|..+|.-+-. +
T Consensus 179 aLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e-~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s 257 (536)
T KOG2734|consen 179 ALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVE-QGLLSWLLKRLKGKAAFDANKQYASEILAILLQNS 257 (536)
T ss_pred HHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHH-hhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccC
Confidence 999987765322 344667777777765 4566666655 577777666443222223346777788877764 4
Q ss_pred CCchHHHHhcCChHHHHHHhc----cC-----CHHHHHHHHHHHHHhccCcccccccccc-hHHHHHHHHhcCChHHHHH
Q 001733 467 PDNIKCMAENGLLEPLMHHLN----EG-----SEEIQMEMASYLGEIVLGHDSKINVPGR-AASTLIRMVHSGNSLTRRI 536 (1019)
Q Consensus 467 ~~n~~~i~~~G~i~~Lv~lL~----~~-----~~~~~~~aa~~L~~La~~~~~~~~i~~~-~i~~Lv~lL~~~~~~~~~~ 536 (1019)
++|+.....-.+|..+++-+. .+ ..++.++.-..|+.+...+++|..+..+ |+....-+++. ....+-.
T Consensus 258 ~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~S 336 (536)
T KOG2734|consen 258 DENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGS 336 (536)
T ss_pred chhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhh
Confidence 458899999999999999775 12 2456667777777777789999999875 77766666665 4556778
Q ss_pred HHHHHHHhhcCCc---chHHHHHcCcHHHHHHHHh
Q 001733 537 AFKALMQISSHHP---SCKILVEAGIVQVMAEEMF 568 (1019)
Q Consensus 537 A~~aL~~Ls~~~~---~~~~l~~~G~v~~Lv~lL~ 568 (1019)
|+++|-....+++ ++..+++.++...+..+..
T Consensus 337 alkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FM 371 (536)
T KOG2734|consen 337 ALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFM 371 (536)
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHh
Confidence 9999988776664 5788888888887776544
No 124
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.32 E-value=0.00017 Score=55.02 Aligned_cols=40 Identities=18% Similarity=0.326 Sum_probs=34.3
Q ss_pred cccCcccC---CCceecCCCccccHHHHHHHHhhhccCCCCCCCCCCC
Q 001733 236 CPLTKEIM---DDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGK 280 (1019)
Q Consensus 236 Cpi~~~~m---~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~ 280 (1019)
||+|.+.+ +.|++++|||+||..||.++. . ....||+|++
T Consensus 2 C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~----~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-G----KSVKCPICRK 44 (44)
T ss_pred CcCcCccccCCCCeEEcccCCHHHHHHHHhhc-C----CCCCCcCCCC
Confidence 89999999 348888999999999999988 3 4678999974
No 125
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.31 E-value=0.00099 Score=59.28 Aligned_cols=87 Identities=31% Similarity=0.357 Sum_probs=70.4
Q ss_pred hHHHHHHh-hcCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHhcCCChhHHHHHHHHHHHhccChhhhhhhh
Q 001733 352 LPLLTKLL-EYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSSHRPVRHESLLLLLELSSTRSLCEKIG 430 (1019)
Q Consensus 352 i~~Lv~lL-~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~~~~~~~i~ 430 (1019)
||.|++.| +++++.+|..|+.+|..+. ...+++.|+.+++++++.+|..|+.+|..+ +
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----------~ 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG-----------DPEAIPALIELLKDEDPMVRRAAARALGRI----------G 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT-----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC----------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC-----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh----------C
Confidence 68899988 7889999999999998663 124589999999999999999999999876 2
Q ss_pred cccchHHHHHHhhhcCCCChHHHHHHHHHHH
Q 001733 431 SIPGGILVLITFKFNWSIDVFAAEIADQILR 461 (1019)
Q Consensus 431 ~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~ 461 (1019)
...+++.|++++.+ +.+..++..|+.+|.
T Consensus 60 -~~~~~~~L~~~l~~-~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -DPEAIPALIKLLQD-DDDEVVREAAAEALG 88 (88)
T ss_dssp -HHHTHHHHHHHHTC--SSHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcC-CCcHHHHHHHHhhcC
Confidence 26689999999963 345666787877763
No 126
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=0.094 Score=58.67 Aligned_cols=221 Identities=14% Similarity=0.116 Sum_probs=157.8
Q ss_pred HHHHHHHhhccCChhHHHHHHhcCCHHHHHHHhcCCChhHHHHHHHHHHHhccCh------h----hhhhhhcccchHHH
Q 001733 369 AAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSSHRPVRHESLLLLLELSSTR------S----LCEKIGSIPGGILV 438 (1019)
Q Consensus 369 ~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~~------~----~~~~i~~~~g~I~~ 438 (1019)
..+.-+..+| .-++--..+++..+|+.|+.+|.+.+.++....+.+|.+|+-.+ + ....+. ..+.|+.
T Consensus 103 d~IQ~mhvlA-t~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLv-dg~vlaL 180 (536)
T KOG2734|consen 103 DIIQEMHVLA-TMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALV-DGQVLAL 180 (536)
T ss_pred HHHHHHHhhh-cChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHH-hccHHHH
Confidence 3455566666 66777778889999999999999999999999999999998643 1 222332 3678888
Q ss_pred HHHhhhc----CCCChHHHHHHHHHHHHhcC-CCCchHHHHhcCChHHHHHHhccC--CHHHHHHHHHHHHHhccC-ccc
Q 001733 439 LITFKFN----WSIDVFAAEIADQILRNLER-NPDNIKCMAENGLLEPLMHHLNEG--SEEIQMEMASYLGEIVLG-HDS 510 (1019)
Q Consensus 439 LV~lL~~----~~~~~~~~~~A~~aL~nLs~-~~~n~~~i~~~G~i~~Lv~lL~~~--~~~~~~~aa~~L~~La~~-~~~ 510 (1019)
||.-+.+ ..++......+...+-||.. .++....+++.|.+..|+..+... -..-+..|..+|+-+-.+ .++
T Consensus 181 LvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~ 260 (536)
T KOG2734|consen 181 LVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDEN 260 (536)
T ss_pred HHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchh
Confidence 8877642 22344556777888999875 455677888889998888866532 345677888888887774 447
Q ss_pred cccccc-chHHHHHHHHhc---C------ChHHHHHHHHHHHHhhcCCcchHHHHHcCcHHHHHHHHhhhccCCCChhHH
Q 001733 511 KINVPG-RAASTLIRMVHS---G------NSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSK 580 (1019)
Q Consensus 511 ~~~i~~-~~i~~Lv~lL~~---~------~~~~~~~A~~aL~~Ls~~~~~~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~ 580 (1019)
+..... .|+..|++-+.- . ..+.-++-..+|+.+-..+.|+..+....+++.+.-+++.. ...+
T Consensus 261 ~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~K------k~sr 334 (536)
T KOG2734|consen 261 RKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLREK------KVSR 334 (536)
T ss_pred hhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHHH------HHhh
Confidence 777777 688888765532 1 23567788888888888999999999888887665555543 2455
Q ss_pred HHHHHHHHHHHhcCCCc
Q 001733 581 EEAAAILANILESGLEH 597 (1019)
Q Consensus 581 ~~A~~~L~~L~~~~~~~ 597 (1019)
-.|..+|-....+..+.
T Consensus 335 ~SalkvLd~am~g~~gt 351 (536)
T KOG2734|consen 335 GSALKVLDHAMFGPEGT 351 (536)
T ss_pred hhHHHHHHHHHhCCCch
Confidence 67777777766665543
No 127
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.29 Score=58.80 Aligned_cols=288 Identities=12% Similarity=0.154 Sum_probs=175.8
Q ss_pred CCHHHHHHHhcCCChhHHHHHH-HHHHHhccChhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCch
Q 001733 392 MDISILIKLLSSSHRPVRHESL-LLLLELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNI 470 (1019)
Q Consensus 392 g~i~~Lv~lL~~~~~~~r~~Aa-~~L~~Ls~~~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~ 470 (1019)
|.++.+-.-|.+...+-|..|+ .++..+....+ ..+..+.+|+.. ...|.+.++..---|.|-+....-.
T Consensus 13 ~ei~elks~l~s~~~~kr~~a~kkvIa~Mt~G~D-------vSslF~dvvk~~--~T~dlelKKlvyLYl~nYa~~~P~~ 83 (734)
T KOG1061|consen 13 GEIPELKSQLNSQSKEKRKDAVKKVIAYMTVGKD-------VSSLFPDVVKCM--QTRDLELKKLVYLYLMNYAKGKPDL 83 (734)
T ss_pred hhchHHHHHhhhhhhhhHHHHHHHHHhcCccCcc-------hHhhhHHHHhhc--ccCCchHHHHHHHHHHHhhccCchH
Confidence 3444444444444444455554 44444444322 134556666665 3566676666666666655322211
Q ss_pred HHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCcccccccccchHHHHHHHHhcCChHHHHHHHHHHHHhhcCCcc
Q 001733 471 KCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDSKINVPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPS 550 (1019)
Q Consensus 471 ~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~ 550 (1019)
.-+++..++.=..+.++..+.-|.+.+..+-. ..+.+....+|.+.++++++-++..++-...++-.. +
T Consensus 84 ----a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v-----~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~--~ 152 (734)
T KOG1061|consen 84 ----AILAVNTFLKDCEDPNPLIRALALRTMGCLRV-----DKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDI--D 152 (734)
T ss_pred ----HHhhhhhhhccCCCCCHHHHHHHhhceeeEee-----hHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcC--C
Confidence 12466667766667788888777776654322 122334679999999999999999888877777654 3
Q ss_pred hHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCcccccccccCcccchhhhHHHHHHHHcCCCCHHH
Q 001733 551 CKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDEL 630 (1019)
Q Consensus 551 ~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v 630 (1019)
.+...+.|.++.|.+++...+ +.+..+|.++|..+.....+.. ........+..++..++. -+.--
T Consensus 153 ~~~~~~~gl~~~L~~ll~D~~-----p~VVAnAlaaL~eI~e~~~~~~--------~~~l~~~~~~~lL~al~e-c~EW~ 218 (734)
T KOG1061|consen 153 PDLVEDSGLVDALKDLLSDSN-----PMVVANALAALSEIHESHPSVN--------LLELNPQLINKLLEALNE-CTEWG 218 (734)
T ss_pred hhhccccchhHHHHHHhcCCC-----chHHHHHHHHHHHHHHhCCCCC--------cccccHHHHHHHHHHHHH-hhhhh
Confidence 457778999999999988332 4788999999999988765422 223345667777777765 44444
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHhCcCCChhHHHHhhhcCCChhHhhc
Q 001733 631 NVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQ 710 (1019)
Q Consensus 631 ~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~~vr~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~LV~ 710 (1019)
|...+.++..=.-.+. .+.. ..+..+.+.|.+.++.+...+.+.+..+.....+ +.+.+- ...-++|+.
T Consensus 219 qi~IL~~l~~y~p~d~--~ea~------~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~-~~~~~~--~K~~~pl~t 287 (734)
T KOG1061|consen 219 QIFILDCLAEYVPKDS--REAE------DICERLTPRLQHANSAVVLSAVKVILQLVKYLKQ-VNELLF--KKVAPPLVT 287 (734)
T ss_pred HHHHHHHHHhcCCCCc--hhHH------HHHHHhhhhhccCCcceEeehHHHHHHHHHHHHH-HHHHHH--HHhccccee
Confidence 4444444333222221 1111 1234566888899999999999999988865444 223333 245678888
Q ss_pred ccCCCCcChHHHHHHHH
Q 001733 711 CPTETIHITEKQAVSAK 727 (1019)
Q Consensus 711 lL~~~~~~~~~~~~A~~ 727 (1019)
++.... +.+-.|+.
T Consensus 288 lls~~~---e~qyvaLr 301 (734)
T KOG1061|consen 288 LLSSES---EIQYVALR 301 (734)
T ss_pred eecccc---hhhHHHHh
Confidence 886654 55554444
No 128
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.25 E-value=0.3 Score=56.27 Aligned_cols=266 Identities=13% Similarity=0.093 Sum_probs=132.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhhcCCcchHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCccc
Q 001733 520 STLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHS 599 (1019)
Q Consensus 520 ~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~ 599 (1019)
|-|-..+++.-..+.-.+++++..++...- ....++ .+|..|-.+|.++. ...+-.|..+|-.|+...+....
T Consensus 267 pfL~~wls~k~emV~lE~Ar~v~~~~~~nv-~~~~~~-~~vs~L~~fL~s~r-----v~~rFsA~Riln~lam~~P~kv~ 339 (898)
T COG5240 267 PFLNSWLSDKFEMVFLEAARAVCALSEENV-GSQFVD-QTVSSLRTFLKSTR-----VVLRFSAMRILNQLAMKYPQKVS 339 (898)
T ss_pred HHHHHHhcCcchhhhHHHHHHHHHHHHhcc-CHHHHH-HHHHHHHHHHhcch-----HHHHHHHHHHHHHHHhhCCceee
Confidence 444445555556677788888888775431 112222 24566666666543 35677888888888887553321
Q ss_pred ccccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCCCHHHHHHH
Q 001733 600 LQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAA 679 (1019)
Q Consensus 600 ~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~~vr~~A 679 (1019)
. +-+.+-.|++. .+..+-..|+.+|..-... +.+-+. +..+..++++-++..+.-+
T Consensus 340 v-------------cN~evEsLIsd-~Nr~IstyAITtLLKTGt~----e~idrL------v~~I~sfvhD~SD~FKiI~ 395 (898)
T COG5240 340 V-------------CNKEVESLISD-ENRTISTYAITTLLKTGTE----ETIDRL------VNLIPSFVHDMSDGFKIIA 395 (898)
T ss_pred e-------------cChhHHHHhhc-ccccchHHHHHHHHHcCch----hhHHHH------HHHHHHHHHhhccCceEEe
Confidence 1 11223344554 5555555666655544332 122111 2234445555455445555
Q ss_pred HHHHHHhCcCCChhHHHHhhhcCCChhHhhcccCCCCcChHHHHHHHHHHhccCCCChhhH--------HHHHhCCChHH
Q 001733 680 IKLLTTLSPYLGHTLVERLCKTRGQPENLIQCPTETIHITEKQAVSAKFLAKLPHQNLTLN--------LALSARNVVPT 751 (1019)
Q Consensus 680 ~~~L~~Ls~~~~~~~~~~l~~~~g~i~~LV~lL~~~~~~~~~~~~A~~~L~nL~~~~~~~~--------~~l~~~g~l~~ 751 (1019)
..+++.||-..+.+... .+.-|...|.+.+ .-+-+..++-+|+......++.+ ..+-+...-+.
T Consensus 396 ida~rsLsl~Fp~k~~s-------~l~FL~~~L~~eG-g~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I 467 (898)
T COG5240 396 IDALRSLSLLFPSKKLS-------YLDFLGSSLLQEG-GLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQI 467 (898)
T ss_pred HHHHHHHHhhCcHHHHH-------HHHHHHHHHHhcc-cchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHH
Confidence 55555555332322111 1222333222222 22334444444433333222221 11112222222
Q ss_pred HHHHHHhhhccCCCc---cch-----------hhhHHHHHHHHHHHHhcCCCchhHHHHHHhCCchHHHHHHHhcCCcHH
Q 001733 752 ILQTINLIQRSGTRT---SRY-----------ASAYLEGLIGILVRFTTTLYEPQILFLARTHNFTSVFTELLMKTSCDE 817 (1019)
Q Consensus 752 Lv~lL~~~~~~~~~~---~~~-----------~~~~~e~a~~aL~~lt~~~~~~~~~~~~~~~g~i~~Lv~LL~~~~~~~ 817 (1019)
.++.|.-.-...+++ .+. ..-+..+|+.+|..|+....|+-.++.+ ...|...|.+ .+++
T Consensus 468 ~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv-----~~~lkRclnD-~Dde 541 (898)
T COG5240 468 TVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQSV-----ENALKRCLND-QDDE 541 (898)
T ss_pred HHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHHH-----HHHHHHHhhc-ccHH
Confidence 222222110111111 111 2334456778888887655566666654 4678889999 8999
Q ss_pred HHHHHHHHHhhhc
Q 001733 818 VQKLAAIGLENLS 830 (1019)
Q Consensus 818 vk~~AA~aL~nLs 830 (1019)
||.+|+.+|.++-
T Consensus 542 VRdrAsf~l~~~~ 554 (898)
T COG5240 542 VRDRASFLLRNMR 554 (898)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999999885
No 129
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.19 E-value=0.00068 Score=74.50 Aligned_cols=50 Identities=24% Similarity=0.411 Sum_probs=43.8
Q ss_pred cccccCcccCCCceec-CCCccccHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCc
Q 001733 234 FYCPLTKEIMDDPVTI-ESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLN 288 (1019)
Q Consensus 234 ~~Cpi~~~~m~dPv~~-~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~~~~l~ 288 (1019)
+.|.|++|+-++||+- -+||.|||+-||++..+ +.+||+|+++|+..+++
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e-----~G~DPIt~~pLs~eelV 51 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAE-----TGKDPITNEPLSIEELV 51 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHH-----cCCCCCCCCcCCHHHee
Confidence 5799999999999998 68999999999999998 45799999998765443
No 130
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.10 E-value=0.24 Score=58.44 Aligned_cols=288 Identities=14% Similarity=0.139 Sum_probs=161.2
Q ss_pred hHHHHHHhhcCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHhcCCCh--hHHHHHHHHHHHhccChhhhhhh
Q 001733 352 LPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSSHR--PVRHESLLLLLELSSTRSLCEKI 429 (1019)
Q Consensus 352 i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL~~~~~--~~r~~Aa~~L~~Ls~~~~~~~~i 429 (1019)
+..+-+=|.+.|+-.+.-|+.++.|+. ..++++... .-|+ ++|.+++. -++..||-+|..|-...+...
T Consensus 113 in~iknDL~srn~~fv~LAL~~I~niG--~re~~ea~~--~DI~---KlLvS~~~~~~vkqkaALclL~L~r~spDl~-- 183 (938)
T KOG1077|consen 113 INSIKNDLSSRNPTFVCLALHCIANIG--SREMAEAFA--DDIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDLV-- 183 (938)
T ss_pred HHHHHhhhhcCCcHHHHHHHHHHHhhc--cHhHHHHhh--hhhH---HHHhCCcchHHHHHHHHHHHHHHHhcCcccc--
Confidence 444556677889999999999999984 455655553 2344 77777654 578888888888866432222
Q ss_pred hcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHHHhcCChHHHHHHhc----c-------------CCHH
Q 001733 430 GSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLN----E-------------GSEE 492 (1019)
Q Consensus 430 ~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~lL~----~-------------~~~~ 492 (1019)
...+.+..++.+|. ..+..+.-.+...+-.|+....--. .+.++.-|..|. . +.|.
T Consensus 184 -~~~~W~~riv~LL~--D~~~gv~ta~~sLi~~lvk~~p~~y----k~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PW 256 (938)
T KOG1077|consen 184 -NPGEWAQRIVHLLD--DQHMGVVTAATSLIEALVKKNPESY----KTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPW 256 (938)
T ss_pred -ChhhHHHHHHHHhC--ccccceeeehHHHHHHHHHcCCHHH----hhhHHHHHHHHHHHHhhcccchhhceeecCCChH
Confidence 22578889999994 3345555666666666664322100 122222222211 0 2456
Q ss_pred HHHHHHHHHHHhcc--CcccccccccchHHHHHHHHhcC-----ChH-----HHHHHHHHHHHhhcCCc-chHHHHHcCc
Q 001733 493 IQMEMASYLGEIVL--GHDSKINVPGRAASTLIRMVHSG-----NSL-----TRRIAFKALMQISSHHP-SCKILVEAGI 559 (1019)
Q Consensus 493 ~~~~aa~~L~~La~--~~~~~~~i~~~~i~~Lv~lL~~~-----~~~-----~~~~A~~aL~~Ls~~~~-~~~~l~~~G~ 559 (1019)
++...+++|.++-. ++..|..+ ...|=++|... +.+ .+...+--..+|+.+-+ ....+.+ +
T Consensus 257 L~vKl~rlLq~~p~~~D~~~r~~l----~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~--~ 330 (938)
T KOG1077|consen 257 LQVKLLRLLQIYPTPEDPSTRARL----NEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSR--A 330 (938)
T ss_pred HHHHHHHHHHhCCCCCCchHHHHH----HHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHH--H
Confidence 66667777766522 11122111 22222233211 111 11112222234443332 2333332 3
Q ss_pred HHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCcccccccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHHHHH
Q 001733 560 VQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQ 639 (1019)
Q Consensus 560 v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~ 639 (1019)
+..|-++|.+.. ..++--|...+..|+.+....+.+ ..-...++..|+...+..++..|+..|+
T Consensus 331 ~~~Lg~fls~rE-----~NiRYLaLEsm~~L~ss~~s~dav-----------K~h~d~Ii~sLkterDvSirrravDLLY 394 (938)
T KOG1077|consen 331 VNQLGQFLSHRE-----TNIRYLALESMCKLASSEFSIDAV-----------KKHQDTIINSLKTERDVSIRRRAVDLLY 394 (938)
T ss_pred HHHHHHHhhccc-----ccchhhhHHHHHHHHhccchHHHH-----------HHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 555666666543 367777888888888875444321 2236777888885478899999999999
Q ss_pred HHhCCCCchHHHHHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHhC
Q 001733 640 CLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTLS 687 (1019)
Q Consensus 640 ~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~~vr~~A~~~L~~Ls 687 (1019)
.+|.-... +. .+..|+++|.+.+..+|+.-+-=...|+
T Consensus 395 ~mcD~~Na-----k~-----IV~elLqYL~tAd~sireeivlKvAILa 432 (938)
T KOG1077|consen 395 AMCDVSNA-----KQ-----IVAELLQYLETADYSIREEIVLKVAILA 432 (938)
T ss_pred HHhchhhH-----HH-----HHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 99974332 21 2345778888887766665443333333
No 131
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.10 E-value=0.33 Score=59.85 Aligned_cols=545 Identities=14% Similarity=0.080 Sum_probs=288.1
Q ss_pred CChHHHHHHhhcCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHhcCCChhHHHHHHHHHHHhccCh-hhhhh
Q 001733 350 GVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSSHRPVRHESLLLLLELSSTR-SLCEK 428 (1019)
Q Consensus 350 g~i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~~-~~~~~ 428 (1019)
-++|.+-..+ ..+.++...++.-+.++.. ....+.. ..-..+.+-.+.......+|+.++..|...+..- +...
T Consensus 121 ~lipf~~e~~-~~~dev~~~~a~~~~~~~~-~v~~~~~--~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~- 195 (759)
T KOG0211|consen 121 ELIPFLTEAE-DDEDEVLLDLAEQLGTFLP-DVGGPEY--AHMLLPPLELLATVEETGVREKAVESLLKVAVGLPKEKL- 195 (759)
T ss_pred hhhhHHHHhc-cchhHHHHHHHHHhcccch-hccchhH--HHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHH-
Confidence 3577777777 5566777777777776652 2111111 1122344444444444567888888887775521 1111
Q ss_pred hhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCc
Q 001733 429 IGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGH 508 (1019)
Q Consensus 429 i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~ 508 (1019)
. --..+|+..+.. .+--..+-.+++++..+...-.. ..++.-.-+..-++-.+..+.++..++.-+.+++..-
T Consensus 196 ~----~~lv~l~~~l~~-~d~~~sr~sacglf~~~~~~~~~--~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~ 268 (759)
T KOG0211|consen 196 R----EHLVPLLKRLAT-GDWFQSRLSACGLFGKLYVSLPD--DAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVL 268 (759)
T ss_pred H----HHHHHHHHHccc-hhhhhcchhhhhhhHHhccCCCh--HHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHH
Confidence 0 011223333321 11112234444555555432221 2222222333334445667888888888888887643
Q ss_pred ccccccccchHHHHHHHHhcCChHHHHHHHHHHHHhhcCCcchHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHH
Q 001733 509 DSKINVPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILA 588 (1019)
Q Consensus 509 ~~~~~i~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~ 588 (1019)
.. .......++.++++..+....+++.|...+.++...-..-.- ...-..+.+++...... .+.+........
T Consensus 269 ~~-~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d-~~~~~~~~l~~~~~d~~-----~~v~~~~~~~~~ 341 (759)
T KOG0211|consen 269 ES-EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDD-VVKSLTESLVQAVEDGS-----WRVSYMVADKFS 341 (759)
T ss_pred HH-HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchh-hhhhhhHHHHHHhcChh-----HHHHHHHhhhhh
Confidence 33 222234678889999988889999999988888754332111 11223455555443321 244444444444
Q ss_pred HHHhcCCCcccccccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhh
Q 001733 589 NILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVI 668 (1019)
Q Consensus 589 ~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL 668 (1019)
.+...-.. .......++....+++. .....+..++.-...++..-.. .....+.....++.+..+.
T Consensus 342 ~L~~~~~~-----------~~~~~~~~~~~~~l~~~-~~~e~r~a~a~~~~~l~~~l~~--~~~~~i~~~~ilp~~~~lv 407 (759)
T KOG0211|consen 342 ELSSAVGP-----------SATRTQLVPPVSNLLKD-EEWEVRYAIAKKVQKLACYLNA--SCYPNIPDSSILPEVQVLV 407 (759)
T ss_pred hHHHHhcc-----------ccCcccchhhHHHHhcc-hhhhhhHHhhcchHHHhhhcCc--ccccccchhhhhHHHHHHH
Confidence 44332111 01123345666677766 5666666655555555543331 0011233345577888888
Q ss_pred cCCCHHHHHHHHHHHHHhCcCCChhHHHHhhhcCCChhHhhcccCCCCcChHHHHHHHHHHhccCCCChhhHHHHHhCCC
Q 001733 669 NNPHDELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCPTETIHITEKQAVSAKFLAKLPHQNLTLNLALSARNV 748 (1019)
Q Consensus 669 ~~~~~~vr~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~LV~lL~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~l~~~g~ 748 (1019)
.+.+..++.+.+.-..++++-.+.+ ... ...++.+...+++.. .+++......+..+-..+............
T Consensus 408 ~d~~~~vr~a~a~~~~~~~p~~~k~---~ti--~~llp~~~~~l~de~--~~V~lnli~~ls~~~~v~~v~g~~~~s~sl 480 (759)
T KOG0211|consen 408 LDNALHVRSALASVITGLSPILPKE---RTI--SELLPLLIGNLKDED--PIVRLNLIDKLSLLEEVNDVIGISTVSNSL 480 (759)
T ss_pred hcccchHHHHHhccccccCccCCcC---cCc--cccChhhhhhcchhh--HHHHHhhHHHHHHHHhccCcccchhhhhhh
Confidence 8889999988877777776433311 111 245566666665554 467766665555553333333333344455
Q ss_pred hHHHHHHHHhhhccCCCccchhhhHHHHHHHHHHHHhcCCCchhHHHHHHhCCchHHHHHHHhcCCcHHHHHHHHHHHhh
Q 001733 749 VPTILQTINLIQRSGTRTSRYASAYLEGLIGILVRFTTTLYEPQILFLARTHNFTSVFTELLMKTSCDEVQKLAAIGLEN 828 (1019)
Q Consensus 749 l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~lt~~~~~~~~~~~~~~~g~i~~Lv~LL~~~~~~~vk~~AA~aL~n 828 (1019)
+|.+..+-.+. ..+....+++ .+-.++.. .. ..+.+.-.-+.+...|.+ -...+++.|+..+..
T Consensus 481 Lp~i~el~~d~------~wRvr~ail~----~ip~la~q---~~--~~~~~~~~~~l~~~~l~d-~v~~Ir~~aa~~l~~ 544 (759)
T KOG0211|consen 481 LPAIVELAEDL------LWRVRLAILE----YIPQLALQ---LG--VEFFDEKLAELLRTWLPD-HVYSIREAAARNLPA 544 (759)
T ss_pred hhhhhhhccch------hHHHHHHHHH----HHHHHHHh---hh--hHHhhHHHHHHHHhhhhh-hHHHHHHHHHHHhHH
Confidence 55555553220 1111111221 11111110 00 011111122233333444 456788888888776
Q ss_pred hcccCCcCCCCCCcCCcccccccccCcccccCCCCCCCCCCCcccCCccccCccchhhhccchHHHHhhhccCchhhHHH
Q 001733 829 LSSESINLSKPPQIKSKKFMKFFSLPKSLSVGSSKKKSVSLCPVHRGACSSQNTFCLIDAKAVDRLLACLYHENVEVVEA 908 (1019)
Q Consensus 829 Ls~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~v~~~~cs~~~~~~Lv~~gai~~Lv~lL~~~d~~v~~~ 908 (1019)
++..-. . -|. ...-|+.++.....++-..+..
T Consensus 545 l~~~~G-~----------~w~-------------------------------------~~~~i~k~L~~~~q~~y~~R~t 576 (759)
T KOG0211|consen 545 LVETFG-S----------EWA-------------------------------------RLEEIPKLLAMDLQDNYLVRMT 576 (759)
T ss_pred HHHHhC-c----------chh-------------------------------------HHHhhHHHHHHhcCcccchhhH
Confidence 653220 0 011 1223667777777777888888
Q ss_pred HHHHHHhhhccCcchhhHHHHHHhccchHHHHHHHhhcChhhHHHHHHHHHHHHHhhCCccccccccccccchHHHHHHh
Q 001733 909 ALSALCTLLDEKVDVDKSVSMLSEVNAIQHVLNVVKEHRQEVLQQKSFWMIERFLVKGGNKQASDISQDRLLPATLVSAF 988 (1019)
Q Consensus 909 Al~AL~~L~~d~~~~~~~~~~i~~~~~i~~l~~lL~~~~~~~~~~~A~~aL~~i~~~~~~~~~~~~~~~~~~~~~Lv~ll 988 (1019)
.+.++..|+.- .-..+....=++.+.++.. ++.++++-+++..|.++...=+....++. ....+..+.
T Consensus 577 ~l~si~~la~v------~g~ei~~~~Llp~~~~l~~-D~vanVR~nvak~L~~i~~~L~~~~~~~~-----v~pll~~L~ 644 (759)
T KOG0211|consen 577 TLFSIHELAEV------LGQEITCEDLLPVFLDLVK-DPVANVRINVAKHLPKILKLLDESVRDEE-----VLPLLETLS 644 (759)
T ss_pred HHHHHHHHHHH------hccHHHHHHHhHHHHHhcc-CCchhhhhhHHHHHHHHHhhcchHHHHHH-----HHHHHHHhc
Confidence 88888876621 1123334455677777776 78889999999999988765222222222 225677888
Q ss_pred hcCCchhhHHHHHHHHHhccCC
Q 001733 989 HHGDVNTRQMAEKILRHLNKMP 1010 (1019)
Q Consensus 989 ~~~~~~~~~~Aa~~L~~L~~~~ 1010 (1019)
++.+...|..|..++..+....
T Consensus 645 ~d~~~dvr~~a~~a~~~i~l~~ 666 (759)
T KOG0211|consen 645 SDQELDVRYRAILAFGSIELSR 666 (759)
T ss_pred cCcccchhHHHHHHHHHHHHHH
Confidence 8888888888888877665443
No 132
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.09 E-value=0.0003 Score=75.28 Aligned_cols=66 Identities=21% Similarity=0.382 Sum_probs=54.0
Q ss_pred CCCccccccCcccCCCceec-CCCccccHHHHHHHHhhhccCCCCCCCCCCCCCCCCC----CccCHhHHHHHHHH
Q 001733 230 LYETFYCPLTKEIMDDPVTI-ESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRG----LNTNVALKTTIEEW 300 (1019)
Q Consensus 230 ~~~~~~Cpi~~~~m~dPv~~-~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~~~~----l~pn~~Lr~~I~~w 300 (1019)
+-.+.+|++|+-+|.|+-+| .|=|||||+||-+++.. ..+||.|+....... +.+..+|+.++.++
T Consensus 12 ~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-----~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKL 82 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-----SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKL 82 (331)
T ss_pred cccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-----hccCCccceeccCccccccCCcchHHHHHHHHH
Confidence 55688999999999999987 89999999999999998 468999987765443 45566777766554
No 133
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.08 E-value=0.0056 Score=69.37 Aligned_cols=206 Identities=15% Similarity=0.097 Sum_probs=141.4
Q ss_pred CHHHHHHHHHHHHHHHhcccccchHHHhcCChHHHHHHhhcCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHH
Q 001733 321 SDRMVLEAIKDLQTVCQRKQYNKVQVRNVGVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKL 400 (1019)
Q Consensus 321 ~~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~l 400 (1019)
++.....++.-|..+++.-..-|.-+.+..++.+|+.+|+.++..+.--+...++|+...-..-+..+.+.|.|..|+.+
T Consensus 402 d~l~~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~ 481 (743)
T COG5369 402 DDLDFVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNL 481 (743)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHH
Confidence 34445566677888887766677778888999999999998766666677888999876777778888899999999999
Q ss_pred hcCCChhHHHHHHHHHHHhccChhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHHHhcCChH
Q 001733 401 LSSSHRPVRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLE 480 (1019)
Q Consensus 401 L~~~~~~~r~~Aa~~L~~Ls~~~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~i~ 480 (1019)
+.+.|...|.+..+.|+++..+.+.-++ -+....-++.
T Consensus 482 v~sKDdaLqans~wvlrHlmyncq~~ek------------------------------------------f~~Lakig~~ 519 (743)
T COG5369 482 VMSKDDALQANSEWVLRHLMYNCQKNEK------------------------------------------FKFLAKIGVE 519 (743)
T ss_pred hhcchhhhhhcchhhhhhhhhcCcchhh------------------------------------------hhhHHhcCHH
Confidence 9887777777777777776554332211 1222333556
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhccC----ccccccccc----c-hHHHHHHHHhcCChHHHHHHHHHHHHhhcCCcch
Q 001733 481 PLMHHLNEGSEEIQMEMASYLGEIVLG----HDSKINVPG----R-AASTLIRMVHSGNSLTRRIAFKALMQISSHHPSC 551 (1019)
Q Consensus 481 ~Lv~lL~~~~~~~~~~aa~~L~~La~~----~~~~~~i~~----~-~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~~ 551 (1019)
.++.+..++.-.++..+..+|.|+..+ ++.+....+ . ....|++.++..+|-..+..+-.|.+++..+++.
T Consensus 520 kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l 599 (743)
T COG5369 520 KVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTL 599 (743)
T ss_pred HHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchH
Confidence 666666666667777777777777542 223333322 1 2466778888888887788899999999888885
Q ss_pred HHHHH--cCcHHHHHHHHh
Q 001733 552 KILVE--AGIVQVMAEEMF 568 (1019)
Q Consensus 552 ~~l~~--~G~v~~Lv~lL~ 568 (1019)
+.++. ...+..+-++|.
T Consensus 600 ~~~V~~q~~~L~~i~eil~ 618 (743)
T COG5369 600 DYIVQSQEDMLDSIFEILD 618 (743)
T ss_pred HHHHHhHHHHHHHHHHHHH
Confidence 55543 344444444443
No 134
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.07 E-value=0.25 Score=60.77 Aligned_cols=498 Identities=10% Similarity=0.057 Sum_probs=266.6
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHhcCC-ChhHHHHHHHHHHHhccCh---hhhhh
Q 001733 353 PLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSS-HRPVRHESLLLLLELSSTR---SLCEK 428 (1019)
Q Consensus 353 ~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL~~~-~~~~r~~Aa~~L~~Ls~~~---~~~~~ 428 (1019)
|.+-.+.......++++++..|...+...+..+. ..-.++ ++..|..+ .-..|..|..+...+...- ..+..
T Consensus 162 ~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~---~~~lv~-l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~e 237 (759)
T KOG0211|consen 162 PPLELLATVEETGVREKAVESLLKVAVGLPKEKL---REHLVP-LLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRE 237 (759)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHH---HHHHHH-HHHHccchhhhhcchhhhhhhHHhccCCChHHHHHH
Confidence 3333333344556788899888887654443322 111222 33333332 2234555555555554322 22222
Q ss_pred hhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCc
Q 001733 429 IGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGH 508 (1019)
Q Consensus 429 i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~ 508 (1019)
+.+++.-+. ..+.+.++..++.-+.+++..-.+ .....+.++.++++..+....++..|...+.++...-
T Consensus 238 -------lr~~~~~lc-~d~~~~Vr~~~a~~l~~~a~~~~~--~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~ 307 (759)
T KOG0211|consen 238 -------LRPIVQSLC-QDDTPMVRRAVASNLGNIAKVLES--EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLL 307 (759)
T ss_pred -------HHHHHHhhc-cccchhhHHHHHhhhHHHHHHHHH--HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhc
Confidence 334444443 345678888888888888754333 6777899999999999888889998888888877532
Q ss_pred ccccccccchHHHHHHHHhcCChHHHHHHHHHHHHhhcCCcchHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHH
Q 001733 509 DSKINVPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILA 588 (1019)
Q Consensus 509 ~~~~~i~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~ 588 (1019)
...........+.+++...+++...+.......+.|+..=+. .....--+++...++.... .+.+..++.-..
T Consensus 308 ~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~-----~e~r~a~a~~~~ 380 (759)
T KOG0211|consen 308 DDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEE-----WEVRYAIAKKVQ 380 (759)
T ss_pred CCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchh-----hhhhHHhhcchH
Confidence 222133345779999999999888888777777766643221 1112223555555554332 122222222233
Q ss_pred HHHhcCC--CcccccccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHH
Q 001733 589 NILESGL--EHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLE 666 (1019)
Q Consensus 589 ~L~~~~~--~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~ 666 (1019)
.++.... ... .+....+++.+-.+... .++.++...+.....+.-.... +... ..-.+.++.
T Consensus 381 ~l~~~l~~~~~~---------~i~~~~ilp~~~~lv~d-~~~~vr~a~a~~~~~~~p~~~k-~~ti-----~~llp~~~~ 444 (759)
T KOG0211|consen 381 KLACYLNASCYP---------NIPDSSILPEVQVLVLD-NALHVRSALASVITGLSPILPK-ERTI-----SELLPLLIG 444 (759)
T ss_pred HHhhhcCccccc---------ccchhhhhHHHHHHHhc-ccchHHHHHhccccccCccCCc-CcCc-----cccChhhhh
Confidence 3333211 111 12334455666666655 6777777666555554322111 0000 133455666
Q ss_pred hhcCCCHHHHHHHHHHHHHhCcCCChhHHHHhhhcCCChhHhhcccCCCCcChHHHHHHHHHHhccCCCChhhHHHHHhC
Q 001733 667 VINNPHDELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCPTETIHITEKQAVSAKFLAKLPHQNLTLNLALSAR 746 (1019)
Q Consensus 667 LL~~~~~~vr~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~LV~lL~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~l~~~ 746 (1019)
.+++..+.++.+..+.+..+-...+..-...+. ...++.++.+-... .+.++.+....+.-+..... ..+.+
T Consensus 445 ~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s--~slLp~i~el~~d~--~wRvr~ail~~ip~la~q~~---~~~~~- 516 (759)
T KOG0211|consen 445 NLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVS--NSLLPAIVELAEDL--LWRVRLAILEYIPQLALQLG---VEFFD- 516 (759)
T ss_pred hcchhhHHHHHhhHHHHHHHHhccCcccchhhh--hhhhhhhhhhccch--hHHHHHHHHHHHHHHHHhhh---hHHhh-
Confidence 777788899988886554433111111111121 23566666665443 24555555554444332111 11111
Q ss_pred CChHHHHHHHHhhhccCCCccchhhhHHHHHHHHHHHHhcCCCchhHHHHHHhCCchHHHHHHHhcCCcHHHHHHHHHHH
Q 001733 747 NVVPTILQTINLIQRSGTRTSRYASAYLEGLIGILVRFTTTLYEPQILFLARTHNFTSVFTELLMKTSCDEVQKLAAIGL 826 (1019)
Q Consensus 747 g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~lt~~~~~~~~~~~~~~~g~i~~Lv~LL~~~~~~~vk~~AA~aL 826 (1019)
+.+..++.. -. ....-.+.++++..+..++...+ ++|.. +..+|.+...... ++...|...+.++
T Consensus 517 ---~~~~~l~~~----~l--~d~v~~Ir~~aa~~l~~l~~~~G-~~w~~----~~~i~k~L~~~~q-~~y~~R~t~l~si 581 (759)
T KOG0211|consen 517 ---EKLAELLRT----WL--PDHVYSIREAAARNLPALVETFG-SEWAR----LEEIPKLLAMDLQ-DNYLVRMTTLFSI 581 (759)
T ss_pred ---HHHHHHHHh----hh--hhhHHHHHHHHHHHhHHHHHHhC-cchhH----HHhhHHHHHHhcC-cccchhhHHHHHH
Confidence 111222110 00 00123455555555555543221 22211 3446666665555 5677777777777
Q ss_pred hhhcccCCcCCCCCCcCCcccccccccCcccccCCCCCCCCCCCcccCCccccCccchhhhccchHHHHhhhccCchhhH
Q 001733 827 ENLSSESINLSKPPQIKSKKFMKFFSLPKSLSVGSSKKKSVSLCPVHRGACSSQNTFCLIDAKAVDRLLACLYHENVEVV 906 (1019)
Q Consensus 827 ~nLs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~v~~~~cs~~~~~~Lv~~gai~~Lv~lL~~~d~~v~ 906 (1019)
.-|+.=- . . .+....-++++.++..+.++.|+
T Consensus 582 ~~la~v~------------------g---------------------------~---ei~~~~Llp~~~~l~~D~vanVR 613 (759)
T KOG0211|consen 582 HELAEVL------------------G---------------------------Q---EITCEDLLPVFLDLVKDPVANVR 613 (759)
T ss_pred HHHHHHh------------------c---------------------------c---HHHHHHHhHHHHHhccCCchhhh
Confidence 6443110 0 0 01235568899999999999999
Q ss_pred HHHHHHHHhhhccCcchhhHHHHHHhccchHHHHHHHhhcChhhHHHHHHHHHHHHHhh
Q 001733 907 EAALSALCTLLDEKVDVDKSVSMLSEVNAIQHVLNVVKEHRQEVLQQKSFWMIERFLVK 965 (1019)
Q Consensus 907 ~~Al~AL~~L~~d~~~~~~~~~~i~~~~~i~~l~~lL~~~~~~~~~~~A~~aL~~i~~~ 965 (1019)
-.++..|..+..--. .=..-+-|.|+.+-|....+.+++.+|.-+++-+-..
T Consensus 614 ~nvak~L~~i~~~L~-------~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~ 665 (759)
T KOG0211|consen 614 INVAKHLPKILKLLD-------ESVRDEEVLPLLETLSSDQELDVRYRAILAFGSIELS 665 (759)
T ss_pred hhHHHHHHHHHhhcc-------hHHHHHHHHHHHHHhccCcccchhHHHHHHHHHHHHH
Confidence 999999998874311 1112244666667776677788888888887666443
No 135
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.00024 Score=84.30 Aligned_cols=57 Identities=14% Similarity=0.316 Sum_probs=50.9
Q ss_pred CCCCccccccCcccCCCceecCCCccccHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCcc
Q 001733 229 PLYETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNT 289 (1019)
Q Consensus 229 ~~~~~~~Cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~~~~l~p 289 (1019)
....-++||.|..-.+|-||+-|||-||-.||+..++. ..+.||.|+.+|...++.|
T Consensus 639 ~yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~et----RqRKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 639 EYKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYET----RQRKCPKCNAAFGANDVHR 695 (698)
T ss_pred HHHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHH----hcCCCCCCCCCCCcccccc
Confidence 34456899999999999999999999999999999998 7889999999998777655
No 136
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.00 E-value=0.00072 Score=57.83 Aligned_cols=44 Identities=23% Similarity=0.580 Sum_probs=34.0
Q ss_pred CCCccccccCcccCCCc-------------eecCCCccccHHHHHHHHhhhccCCCCCCCCCC
Q 001733 230 LYETFYCPLTKEIMDDP-------------VTIESGVTYERNAITAWFEKFETSGDIFCPTTG 279 (1019)
Q Consensus 230 ~~~~~~Cpi~~~~m~dP-------------v~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~ 279 (1019)
+.++- |+||++-|.|| ++.+|||.|-..||++|++. +.+||.|+
T Consensus 17 ~~~d~-C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-----~~~CP~CR 73 (73)
T PF12678_consen 17 IADDN-CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-----NNTCPLCR 73 (73)
T ss_dssp SCCSB-ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-----SSB-TTSS
T ss_pred CcCCc-ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-----CCcCCCCC
Confidence 33443 99999999553 33489999999999999987 45999996
No 137
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.89 E-value=0.0007 Score=77.67 Aligned_cols=67 Identities=21% Similarity=0.404 Sum_probs=54.6
Q ss_pred CCCCccccccCcccCCCcee-cCCCccccHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCccC-HhHHHHHHHH
Q 001733 229 PLYETFYCPLTKEIMDDPVT-IESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTN-VALKTTIEEW 300 (1019)
Q Consensus 229 ~~~~~~~Cpi~~~~m~dPv~-~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~~~~l~pn-~~Lr~~I~~w 300 (1019)
++.++..||+|..+++||+. +.|||.||+.||.+|... +..||.|+..+......|+ ..+++.+..|
T Consensus 17 ~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-----~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l 85 (391)
T KOG0297|consen 17 PLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-----HQKCPVCRQELTQAEELPVPRALRRELLKL 85 (391)
T ss_pred CCcccccCccccccccCCCCCCCCCCcccccccchhhcc-----CcCCcccccccchhhccCchHHHHHHHHhc
Confidence 36678999999999999999 599999999999999987 5789999988877665552 3455555554
No 138
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.00058 Score=70.78 Aligned_cols=49 Identities=22% Similarity=0.398 Sum_probs=43.6
Q ss_pred CCccccccCcccCCCceecCCCccccHHHHHH-HHhhhccCCCCCCCCCCCCCC
Q 001733 231 YETFYCPLTKEIMDDPVTIESGVTYERNAITA-WFEKFETSGDIFCPTTGKKLM 283 (1019)
Q Consensus 231 ~~~~~Cpi~~~~m~dPv~~~~g~t~~r~~I~~-~~~~~~~~~~~~cP~~~~~l~ 283 (1019)
..++.|+||.+.+.+|+-.+|||.||=.||-. |..+ ....||.|++...
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~----k~~~CplCRak~~ 262 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKK----KYEFCPLCRAKVY 262 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhh----ccccCchhhhhcc
Confidence 46899999999999999999999999999999 8777 5677999998543
No 139
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.00071 Score=76.53 Aligned_cols=58 Identities=19% Similarity=0.335 Sum_probs=49.1
Q ss_pred ccccccCcccCCCceecCCCccccHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCccC
Q 001733 233 TFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTN 290 (1019)
Q Consensus 233 ~~~Cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~~~~l~pn 290 (1019)
+..||||++-..-|+...|||.||=.||-++|.-....+...||.|+..+...++.|-
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv 243 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPV 243 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeee
Confidence 7899999999999999999999999999999985322357789999988777666653
No 140
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.98 Score=56.24 Aligned_cols=348 Identities=14% Similarity=0.097 Sum_probs=185.9
Q ss_pred cCChHHHHHHhhcCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHhcCCC-hhHHHHHHHHHHHhccChhhhh
Q 001733 349 VGVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSSH-RPVRHESLLLLLELSSTRSLCE 427 (1019)
Q Consensus 349 ~g~i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL~~~~-~~~r~~Aa~~L~~Ls~~~~~~~ 427 (1019)
++++..|...|++.|..++-.|++.+..++...+ +.. ...+|..+++++...+ ...=..|+-+|.+|+...-..-
T Consensus 340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~L--ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PEL--ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HHH--HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence 4678888899999999999999999999986665 222 2346777777776544 5677889999999976321111
Q ss_pred hhhcccchHHHHHHhhh------cCCCChHHHHHHHHHHHHhcCCCC-c-hHHHHhcCChHHHHHHhccCCHHHHHHHHH
Q 001733 428 KIGSIPGGILVLITFKF------NWSIDVFAAEIADQILRNLERNPD-N-IKCMAENGLLEPLMHHLNEGSEEIQMEMAS 499 (1019)
Q Consensus 428 ~i~~~~g~I~~LV~lL~------~~~~~~~~~~~A~~aL~nLs~~~~-n-~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~ 499 (1019)
.. ....+|.++.-|. ..+....++..|+-+.|.++...+ + ...+...=.-..|+..+-+....++..|..
T Consensus 416 s~--l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsA 493 (1133)
T KOG1943|consen 416 SL--LEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASA 493 (1133)
T ss_pred HH--HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHH
Confidence 00 1233445554442 112334578888888888874221 1 122222111112334445666788888888
Q ss_pred HHHHhccCcccccccccchHHHHHHHHhcCChHHHHHHHHHHHHhhcCCcchHHHHH-cCcHHHHHHHHhhhccCCCChh
Q 001733 500 YLGEIVLGHDSKINVPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVE-AGIVQVMAEEMFIRIIHNEPMN 578 (1019)
Q Consensus 500 ~L~~La~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~~~~l~~-~G~v~~Lv~lL~~~~~~~~~~~ 578 (1019)
+|........+. -.|++ |+....--+...+.++-..|. ..+.+ .|...++++-|......+.+..
T Consensus 494 AlqE~VGR~~n~----p~Gi~-Lis~~dy~sV~~rsNcy~~l~---------~~ia~~~~y~~~~f~~L~t~Kv~HWd~~ 559 (1133)
T KOG1943|consen 494 ALQENVGRQGNF----PHGIS-LISTIDYFSVTNRSNCYLDLC---------VSIAEFSGYREPVFNHLLTKKVCHWDVK 559 (1133)
T ss_pred HHHHHhccCCCC----CCchh-hhhhcchhhhhhhhhHHHHHh---------HHHHhhhhHHHHHHHHHHhcccccccHH
Confidence 888765422211 11222 121111112222333222221 12222 4556666665554433345568
Q ss_pred HHHHHHHHHHHHHhcCCCcccccccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCchHHHHH---HH
Q 001733 579 SKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPMATIVS---VI 655 (1019)
Q Consensus 579 ~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~La~~~~~~~~i~~---~i 655 (1019)
+++.++.+|.+|+...... ...+.+++|++.... .+...+.-+.-+...+...-.....+.. ..
T Consensus 560 irelaa~aL~~Ls~~~pk~------------~a~~~L~~lld~~ls-~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~ 626 (1133)
T KOG1943|consen 560 IRELAAYALHKLSLTEPKY------------LADYVLPPLLDSTLS-KDASMRHGVFLAAGEVIGALRKLEPVIKGLDEN 626 (1133)
T ss_pred HHHHHHHHHHHHHHhhHHh------------hcccchhhhhhhhcC-CChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHH
Confidence 9999999999988764321 235677888888777 7888887665555554432211110000 01
Q ss_pred HHcCC---hHHHH-HhhcCC-CHHHHHHHHHHHHHhCcCCChhHHHHhhhcCCChhHhhcccCCCCcChHHHHHHHHHHh
Q 001733 656 KETEA---SYSLL-EVINNP-HDELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCPTETIHITEKQAVSAKFLA 730 (1019)
Q Consensus 656 ~~~g~---i~~Lv-~LL~~~-~~~vr~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~LV~lL~~~~~~~~~~~~A~~~L~ 730 (1019)
+-+|. ++++. ....-+ ..-++...++.+.+++.....-..+.+. .+....+-+.+..+ + .++..|...++
T Consensus 627 ~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~--e~~~~ll~~~l~~~--n-~i~~~av~av~ 701 (1133)
T KOG1943|consen 627 RIAGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVI--ENWQMLLAQNLTLP--N-QIRDAAVSAVS 701 (1133)
T ss_pred HhhhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHH--HHHHHHHHHhhcch--H-HHHHHHHHHHH
Confidence 11121 22222 111111 2456777778888888544432222222 12223333344222 2 56677777777
Q ss_pred ccCC
Q 001733 731 KLPH 734 (1019)
Q Consensus 731 nL~~ 734 (1019)
.+..
T Consensus 702 ~l~s 705 (1133)
T KOG1943|consen 702 DLVS 705 (1133)
T ss_pred HHHH
Confidence 7654
No 141
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.81 E-value=0.14 Score=60.84 Aligned_cols=370 Identities=15% Similarity=0.166 Sum_probs=214.0
Q ss_pred HHhhcCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHhcCCChhHHHHHHHHHHHhccChhhhhhhhcccchH
Q 001733 357 KLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSSHRPVRHESLLLLLELSSTRSLCEKIGSIPGGI 436 (1019)
Q Consensus 357 ~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~~~~~~~i~~~~g~I 436 (1019)
+=|++++.-+|=..++.|+.| ..++-- ...+|.+-..|.+.++-+|++|+.+++.+-...+ .+ .+.+=
T Consensus 106 kDLQHPNEyiRG~TLRFLckL--kE~ELl-----epl~p~IracleHrhsYVRrNAilaifsIyk~~~---~L--~pDap 173 (948)
T KOG1058|consen 106 KDLQHPNEYIRGSTLRFLCKL--KEPELL-----EPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE---HL--IPDAP 173 (948)
T ss_pred hhccCchHhhcchhhhhhhhc--CcHHHh-----hhhHHHHHHHHhCcchhhhhhhheeehhHHhhhh---hh--cCChH
Confidence 346778888888888888888 333322 3458889999999999999999999998865421 11 12333
Q ss_pred HHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhcc-Ccccccccc
Q 001733 437 LVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVL-GHDSKINVP 515 (1019)
Q Consensus 437 ~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~-~~~~~~~i~ 515 (1019)
..+-..|. ...||.++++|...|+..-. +... .++..-+.-..+-++.++.-.+..+...|. ++.-+
T Consensus 174 eLi~~fL~-~e~DpsCkRNAFi~L~~~D~--ErAl-----~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~---- 241 (948)
T KOG1058|consen 174 ELIESFLL-TEQDPSCKRNAFLMLFTTDP--ERAL-----NYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEK---- 241 (948)
T ss_pred HHHHHHHH-hccCchhHHHHHHHHHhcCH--HHHH-----HHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHh----
Confidence 33333443 34688899998887774421 1100 011111222222345555555666665554 22111
Q ss_pred cchHHHHHHHHhcCChHHHHHHHHHHHHhhcCCcchHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCC
Q 001733 516 GRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGL 595 (1019)
Q Consensus 516 ~~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~ 595 (1019)
...+..+..+|.+.++.++-.|++.|..|+.++...+. +...+++++..... ..++--...-|..+. .
T Consensus 242 ~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~-----Aa~~~i~l~~kesd----nnvklIvldrl~~l~---~ 309 (948)
T KOG1058|consen 242 ARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKA-----AASTYIDLLVKESD----NNVKLIVLDRLSELK---A 309 (948)
T ss_pred hHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHH-----HHHHHHHHHHhccC----cchhhhhHHHHHHHh---h
Confidence 12578888889888888888899999888877654222 23345555543321 123322222233332 1
Q ss_pred CcccccccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhc------
Q 001733 596 EHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVIN------ 669 (1019)
Q Consensus 596 ~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~------ 669 (1019)
..+. .-++.+-.++++|.. ++-+++.+++.....|.++... .+++..++. ++..
T Consensus 310 ~~~~----------il~~l~mDvLrvLss-~dldvr~Ktldi~ldLvssrNv-ediv~~Lkk--------e~~kT~~~e~ 369 (948)
T KOG1058|consen 310 LHEK----------ILQGLIMDVLRVLSS-PDLDVRSKTLDIALDLVSSRNV-EDIVQFLKK--------EVMKTHNEES 369 (948)
T ss_pred hhHH----------HHHHHHHHHHHHcCc-ccccHHHHHHHHHHhhhhhccH-HHHHHHHHH--------HHHhcccccc
Confidence 1221 225677778888988 9999999999999999876543 444432221 1221
Q ss_pred CCCHHHHHHHHHHHHHhCcCCChhHHHHhhhcCCChhHhhcccCCCCcChHHHHHHHHHHhccCCCChhhHHHHHhCCCh
Q 001733 670 NPHDELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCPTETIHITEKQAVSAKFLAKLPHQNLTLNLALSARNVV 749 (1019)
Q Consensus 670 ~~~~~vr~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~LV~lL~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~l~~~g~l 749 (1019)
..+..-|..-++++...+...++-. +..++.|+..+.+.+ .......+..+.......++++ ...+
T Consensus 370 d~~~~yRqlLiktih~cav~Fp~~a-------atvV~~ll~fisD~N--~~aas~vl~FvrE~iek~p~Lr-----~~ii 435 (948)
T KOG1058|consen 370 DDNGKYRQLLIKTIHACAVKFPEVA-------ATVVSLLLDFISDSN--EAAASDVLMFVREAIEKFPNLR-----ASII 435 (948)
T ss_pred ccchHHHHHHHHHHHHHhhcChHHH-------HHHHHHHHHHhccCC--HHHHHHHHHHHHHHHHhCchHH-----HHHH
Confidence 1223567777788887774433321 356788999997776 2333333333443333333332 3345
Q ss_pred HHHHHHHHhhhccCCCccchhhhHHHHHHHHHHHHhcCCCchhHHH---HHH-hCCchHHHH
Q 001733 750 PTILQTINLIQRSGTRTSRYASAYLEGLIGILVRFTTTLYEPQILF---LAR-THNFTSVFT 807 (1019)
Q Consensus 750 ~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~lt~~~~~~~~~~---~~~-~~g~i~~Lv 807 (1019)
..++..+...+++ .+.++++|++..++.+ ..+.+. .++ ..|=+|.+.
T Consensus 436 ~~l~~~~~~irS~---------ki~rgalwi~GeYce~--~~~i~~~~k~i~~slGEvp~~~ 486 (948)
T KOG1058|consen 436 EKLLETFPQIRSS---------KICRGALWILGEYCEG--LSEIQSVIKIIRQSLGEVPIVC 486 (948)
T ss_pred HHHHHhhhhhccc---------ccchhHHHHHHHHHhh--hHHHHHHHHHHHHhccccceeh
Confidence 6666666654444 3457788888877765 454444 222 257777554
No 142
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.80 E-value=0.017 Score=61.56 Aligned_cols=183 Identities=20% Similarity=0.184 Sum_probs=113.6
Q ss_pred hcCCHHHHHHHHHHHHhhccCC--hhHHHHHHh--cCCHHHHHHHhcCCChhHHHHHHHHHHHhccChhhhhhhhcccch
Q 001733 360 EYKDRNVRCAAMELLRQLVVED--DEGKEMIAE--TMDISILIKLLSSSHRPVRHESLLLLLELSSTRSLCEKIGSIPGG 435 (1019)
Q Consensus 360 ~s~~~~~~~~Al~~L~~La~~~--~~~k~~I~~--~g~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~~~~~~~i~~~~g~ 435 (1019)
.+.+.+.|..|+..|..+...+ .+....+.+ ...+..++..+.+....+...|+.++..|+..-...-.-. ....
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY-ADIL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH-HHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH-HHHH
Confidence 5678999999999999998655 333333332 2456677777777667788899999999876432221111 2457
Q ss_pred HHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCcc-ccccc
Q 001733 436 ILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHD-SKINV 514 (1019)
Q Consensus 436 I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~-~~~~i 514 (1019)
+|.|++.+. .....++..|..+|..++.+-.....+ .++.+...+.+.++.++..++..|..+...-. ....+
T Consensus 96 l~~Ll~~~~--~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l 169 (228)
T PF12348_consen 96 LPPLLKKLG--DSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL 169 (228)
T ss_dssp HHHHHHGGG-----HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred HHHHHHHHc--cccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence 888888885 445678889999999888654311111 14566667788899999999999988866322 23333
Q ss_pred c-----cchHHHHHHHHhcCChHHHHHHHHHHHHhhcCCc
Q 001733 515 P-----GRAASTLIRMVHSGNSLTRRIAFKALMQISSHHP 549 (1019)
Q Consensus 515 ~-----~~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~ 549 (1019)
. +..++.+.+.+.++++++|+.|-.+++.+...-+
T Consensus 170 ~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 170 QKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp --HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred cccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 2 2356888889999999999999999999865433
No 143
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.76 E-value=0.027 Score=68.66 Aligned_cols=187 Identities=18% Similarity=0.084 Sum_probs=133.1
Q ss_pred HHHHHHHHHHhCcCCChhHHHHhhhcCCChhHhhcccCCCCcChHHHHHHHHHHhccCCCChhhHHHHHhCCChHHHHHH
Q 001733 676 AVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCPTETIHITEKQAVSAKFLAKLPHQNLTLNLALSARNVVPTILQT 755 (1019)
Q Consensus 676 r~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~LV~lL~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~l~~~g~l~~Lv~l 755 (1019)
|..|+.+|..+-+- +.-.+. +.-.-|..|..++||+++. .|.+---+-+-+.+-.-|+.....|+..++....++.
T Consensus 487 RlRAL~LL~RFLDl-GpWAV~-LaLsVGIFPYVLKLLQS~a--~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~v 562 (1387)
T KOG1517|consen 487 RLRALVLLARFLDL-GPWAVD-LALSVGIFPYVLKLLQSSA--RELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQV 562 (1387)
T ss_pred HHHHHHHHHHHhcc-chhhhh-hhhccchHHHHHHHhccch--HhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEE
Confidence 44555555555532 222222 1112588899999998876 4777777777777766688888888888888888888
Q ss_pred HHhhhccCCCccchhhhHHHHHHHHHHHHhcCCCchhHHHHHHhCCchHHHHHHHhcCCcHHHHHHHHHHHhhhcccCCc
Q 001733 756 INLIQRSGTRTSRYASAYLEGLIGILVRFTTTLYEPQILFLARTHNFTSVFTELLMKTSCDEVQKLAAIGLENLSSESIN 835 (1019)
Q Consensus 756 L~~~~~~~~~~~~~~~~~~e~a~~aL~~lt~~~~~~~~~~~~~~~g~i~~Lv~LL~~~~~~~vk~~AA~aL~nLs~~~~~ 835 (1019)
|.+.+ . ....-...++-+|+.|+.+ -+.-|+...+.+.|.+-...|.+...+..|...|.+|+.|=.+-.
T Consensus 563 L~~~~--~-----~~~EqrtmaAFVLAviv~n--f~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~- 632 (1387)
T KOG1517|consen 563 LDPSQ--A-----IPPEQRTMAAFVLAVIVRN--FKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYD- 632 (1387)
T ss_pred ecCcC--C-----CCHHHHHHHHHHHHHHHcc--cchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcc-
Confidence 76411 1 1112334466677888875 678889999999999988999982269999999999987743320
Q ss_pred CCCCCCcCCcccccccccCcccccCCCCCCCCCCCcccCCccccCccchhhhccchHHHHhhhccCchhhHHHHHHHHHh
Q 001733 836 LSKPPQIKSKKFMKFFSLPKSLSVGSSKKKSVSLCPVHRGACSSQNTFCLIDAKAVDRLLACLYHENVEVVEAALSALCT 915 (1019)
Q Consensus 836 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~v~~~~cs~~~~~~Lv~~gai~~Lv~lL~~~d~~v~~~Al~AL~~ 915 (1019)
. ..++=++.+|.+.|..+|.++-++|+.+|+.||.+
T Consensus 633 -----------------~---------------------------Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgt 668 (1387)
T KOG1517|consen 633 -----------------E---------------------------ARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGT 668 (1387)
T ss_pred -----------------h---------------------------hhhccccccHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 0 01111357899999999999999999999999999
Q ss_pred hhccC
Q 001733 916 LLDEK 920 (1019)
Q Consensus 916 L~~d~ 920 (1019)
++.+.
T Consensus 669 fl~~~ 673 (1387)
T KOG1517|consen 669 FLSNG 673 (1387)
T ss_pred Hhccc
Confidence 99753
No 144
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.74 E-value=0.095 Score=60.19 Aligned_cols=307 Identities=15% Similarity=0.139 Sum_probs=163.5
Q ss_pred HHHHHHHHHhcccccchHHHhcCChHHHHHHhhcCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHhcCCChh
Q 001733 328 AIKDLQTVCQRKQYNKVQVRNVGVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSSHRP 407 (1019)
Q Consensus 328 Al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL~~~~~~ 407 (1019)
-++.+-.+.+++++.+..+ .|.|-.-|++.-..++.++++.++.++..+- -...+ ..+|..|-.+|++....
T Consensus 247 lvr~~~~ll~~n~q~~~q~-----rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv--~~~~~-~~~vs~L~~fL~s~rv~ 318 (898)
T COG5240 247 LVRATVELLKENSQALLQL-----RPFLNSWLSDKFEMVFLEAARAVCALSEENV--GSQFV-DQTVSSLRTFLKSTRVV 318 (898)
T ss_pred hHHHHHHHHHhChHHHHHH-----HHHHHHHhcCcchhhhHHHHHHHHHHHHhcc--CHHHH-HHHHHHHHHHHhcchHH
Confidence 3445556677777766543 5777777777778899999999999874330 11111 23566777788888889
Q ss_pred HHHHHHHHHHHhccChhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHHHhcCChHHHHHHhc
Q 001733 408 VRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLN 487 (1019)
Q Consensus 408 ~r~~Aa~~L~~Ls~~~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~lL~ 487 (1019)
.|-.|..+|..|++....+.... ..-++.|+. +.+..+...|...|..- ..+++..+++. .|+.++.=++
T Consensus 319 ~rFsA~Riln~lam~~P~kv~vc--N~evEsLIs-----d~Nr~IstyAITtLLKT-Gt~e~idrLv~--~I~sfvhD~S 388 (898)
T COG5240 319 LRFSAMRILNQLAMKYPQKVSVC--NKEVESLIS-----DENRTISTYAITTLLKT-GTEETIDRLVN--LIPSFVHDMS 388 (898)
T ss_pred HHHHHHHHHHHHHhhCCceeeec--ChhHHHHhh-----cccccchHHHHHHHHHc-CchhhHHHHHH--HHHHHHHhhc
Confidence 99999999999998654443332 223344332 22333444444444322 23344444432 3444444333
Q ss_pred cCCHHHHHHHHHHHHHhccCcccccccccchHHHHHHHH-hcCChHHHHHHHHHHHHhhcCCc-chHHHHHcCcHHHHHH
Q 001733 488 EGSEEIQMEMASYLGEIVLGHDSKINVPGRAASTLIRMV-HSGNSLTRRIAFKALMQISSHHP-SCKILVEAGIVQVMAE 565 (1019)
Q Consensus 488 ~~~~~~~~~aa~~L~~La~~~~~~~~i~~~~i~~Lv~lL-~~~~~~~~~~A~~aL~~Ls~~~~-~~~~l~~~G~v~~Lv~ 565 (1019)
++ .+.-+..++..|+..-..+.. ..+.-|...| ..|.-+.+..++.++..+-.+.+ .+.. +++.|-.
T Consensus 389 D~---FKiI~ida~rsLsl~Fp~k~~---s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr-----aLe~LC~ 457 (898)
T COG5240 389 DG---FKIIAIDALRSLSLLFPSKKL---SYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER-----ALEVLCT 457 (898)
T ss_pred cC---ceEEeHHHHHHHHhhCcHHHH---HHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH-----HHHHHHH
Confidence 33 333444444444442111110 1233333322 23455666666666665554442 2222 2333444
Q ss_pred HHhhhccCCCChhHHHHHHHHHHHHHhcCCCcccccccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCC
Q 001733 566 EMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSP 645 (1019)
Q Consensus 566 lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~La~~~ 645 (1019)
.+... +..+-+..+|.-|....+...+ -...+.+.+-+++ - .+.-+|..|+.+|...+-+.
T Consensus 458 fIEDc-------ey~~I~vrIL~iLG~EgP~a~~----------P~~yvrhIyNR~i-L-EN~ivRsaAv~aLskf~ln~ 518 (898)
T COG5240 458 FIEDC-------EYHQITVRILGILGREGPRAKT----------PGKYVRHIYNRLI-L-ENNIVRSAAVQALSKFALNI 518 (898)
T ss_pred HHhhc-------chhHHHHHHHHHhcccCCCCCC----------cchHHHHHHHHHH-H-hhhHHHHHHHHHHHHhccCc
Confidence 44322 2223444444444332221110 0122222222222 2 56788999999997766544
Q ss_pred CchHHHHHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHhCc
Q 001733 646 KPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTLSP 688 (1019)
Q Consensus 646 ~~~~~i~~~i~~~g~i~~Lv~LL~~~~~~vr~~A~~~L~~Ls~ 688 (1019)
.... ........|-+.+++.++++|..|..+|.+|-.
T Consensus 519 ~d~~------~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~ 555 (898)
T COG5240 519 SDVV------SPQSVENALKRCLNDQDDEVRDRASFLLRNMRL 555 (898)
T ss_pred cccc------cHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhh
Confidence 3211 111233456688899999999999999998873
No 145
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.73 E-value=0.13 Score=54.03 Aligned_cols=257 Identities=14% Similarity=0.129 Sum_probs=151.9
Q ss_pred hHHHHHHhhcC--CHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHhcCCChhHHHHHHHHHHHhccChhhhhhh
Q 001733 352 LPLLTKLLEYK--DRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSSHRPVRHESLLLLLELSSTRSLCEKI 429 (1019)
Q Consensus 352 i~~Lv~lL~s~--~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~~~~~~~i 429 (1019)
+..+.+.|... ...-+-+|+-.|+++.. .+.|..+.+....++...+...+-+|...
T Consensus 5 i~~i~~~L~~~s~~l~~r~rALf~Lr~l~~-----------~~~i~~i~ka~~d~s~llkhe~ay~LgQ~---------- 63 (289)
T KOG0567|consen 5 IETIGNILVNKSQPLQNRFRALFNLRNLLG-----------PAAIKAITKAFIDDSALLKHELAYVLGQM---------- 63 (289)
T ss_pred HHHHHHHHcCccHHHHHHHHHHHhhhccCC-----------hHHHHHHHHhcccchhhhccchhhhhhhh----------
Confidence 34455555542 23445567777777752 22355566666555445555555555443
Q ss_pred hcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCcc
Q 001733 430 GSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHD 509 (1019)
Q Consensus 430 ~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~ 509 (1019)
....+++.|+..|...+..|-++..|+.+|.++- ..+.++.|-+..++.-..+++.+..++..+-..+.
T Consensus 64 -~~~~Av~~l~~vl~desq~pmvRhEAaealga~~----------~~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~ 132 (289)
T KOG0567|consen 64 -QDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG----------DPESLEILTKYIKDPCKEVRETCELAIKRLEWKDI 132 (289)
T ss_pred -ccchhhHHHHHHhcccccchHHHHHHHHHHHhhc----------chhhHHHHHHHhcCCccccchHHHHHHHHHHHhhc
Confidence 2367999999999877778888889999998654 33455566666655556666666666666643211
Q ss_pred ccc--------------ccccchHHHHHHHHhcCC-hH-HHHHHHHHHHHhhcCCcchHHHHHcCcHHHHHHHHhhhccC
Q 001733 510 SKI--------------NVPGRAASTLIRMVHSGN-SL-TRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRIIH 573 (1019)
Q Consensus 510 ~~~--------------~i~~~~i~~Lv~lL~~~~-~~-~~~~A~~aL~~Ls~~~~~~~~l~~~G~v~~Lv~lL~~~~~~ 573 (1019)
.-. ....+-+..|-..|.+.+ +. -+..|...|.|+.... +|-.|++-+...
T Consensus 133 ~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~Ee----------aI~al~~~l~~~--- 199 (289)
T KOG0567|consen 133 IDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTEE----------AINALIDGLADD--- 199 (289)
T ss_pred cccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcHH----------HHHHHHHhcccc---
Confidence 110 001112334434333333 22 2334555555554321 233333333221
Q ss_pred CCChhHHHHHHHHHHHHHhcCCCcccccccccCcccchhhhHHHHHHHHcCC-CCHHHHHHHHHHHHHHhCCCCchHHHH
Q 001733 574 NEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNS-TPDELNVHLIRILQCLTKSPKPMATIV 652 (1019)
Q Consensus 574 ~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~-~~~~v~~~a~~aL~~La~~~~~~~~i~ 652 (1019)
+.-.|..++-++..| .+.-.|+.|...|... .++.+|..|+.+|..++. +
T Consensus 200 --SalfrhEvAfVfGQl-------------------~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~-----e--- 250 (289)
T KOG0567|consen 200 --SALFRHEVAFVFGQL-------------------QSPAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD-----E--- 250 (289)
T ss_pred --hHHHHHHHHHHHhhc-------------------cchhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC-----H---
Confidence 234455566555543 3345677777776542 779999999999999976 2
Q ss_pred HHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHhCc
Q 001733 653 SVIKETEASYSLLEVINNPHDELAVAAIKLLTTLSP 688 (1019)
Q Consensus 653 ~~i~~~g~i~~Lv~LL~~~~~~vr~~A~~~L~~Ls~ 688 (1019)
.+++.|.+++.++.+-++..|.-+|..+-.
T Consensus 251 ------~~~~vL~e~~~D~~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 251 ------DCVEVLKEYLGDEERVVRESCEVALDMLEY 280 (289)
T ss_pred ------HHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 345678889999999999999888876553
No 146
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.69 E-value=2.2 Score=51.52 Aligned_cols=273 Identities=14% Similarity=0.084 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHHHHhcccccchHHHhcCChHHHHHHhhcCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHh
Q 001733 322 DRMVLEAIKDLQTVCQRKQYNKVQVRNVGVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLL 401 (1019)
Q Consensus 322 ~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL 401 (1019)
+......+..|--+...++.....= ...+.=.+.+++++.|...|...--++..++...++.- | +...+..-.
T Consensus 37 ~r~c~~~lskllyll~qge~~~~~e-ate~ff~~tKlfQskd~~LRr~vYl~Ikels~isedvi--i----vtsslmkD~ 109 (865)
T KOG1078|consen 37 PRKCRHILSKLLYLLNQGEHFGETE-ATELFFAITKLFQSKDVSLRRMVYLAIKELSKISEDVI--I----VTSSLMKDM 109 (865)
T ss_pred HHHHHHHHHHHHHHHhcccccchhh-HHHHHHHHHHHHhhcCHHHHHHHHHHHhhccccchhhh--h----hhHHHHhhc
Confidence 4455566666665555544322110 01123345567788888888888778888875554321 1 233444444
Q ss_pred cCCChhHHHHHHHHHHHhccChhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHH-HHHHhcCCCCchHHHHhcCChH
Q 001733 402 SSSHRPVRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQ-ILRNLERNPDNIKCMAENGLLE 480 (1019)
Q Consensus 402 ~~~~~~~r~~Aa~~L~~Ls~~~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~-aL~nLs~~~~n~~~i~~~G~i~ 480 (1019)
.......|.+|+..|+.+.-... .-+|...++-.- -+..+.+...|.. .++-|..+.+...+- ..+
T Consensus 110 t~~~d~yr~~AiR~L~~I~d~~m--------~~~iery~kqai-vd~~~avSsaalvss~hll~~~~~~vkrw-~ne--- 176 (865)
T KOG1078|consen 110 TGKEDLYRAAAIRALCSIIDGTM--------LQAIERYMKQAI-VDKNPAVSSAALVSSYHLLPISFDVVKRW-ANE--- 176 (865)
T ss_pred cCCCcchhHHHHHHHHhhcCcch--------hHHHHHHHHhHe-eccccccchHHHHHHhhhhcccHHHHHHH-HHh---
Confidence 55556778888888887753221 111222222110 0122222222222 222222222211111 111
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhccCcccccccccchHHHHHHHHhcCC---hHHHHHHHHHHHHhhcCCcchHHHHHc
Q 001733 481 PLMHHLNEGSEEIQMEMASYLGEIVLGHDSKINVPGRAASTLIRMVHSGN---SLTRRIAFKALMQISSHHPSCKILVEA 557 (1019)
Q Consensus 481 ~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~i~~~~i~~Lv~lL~~~~---~~~~~~A~~aL~~Ls~~~~~~~~l~~~ 557 (1019)
......+.+.-+|..+...|..+-.++ +-++..|+..+..++ +-.+..-.++-..+.... .
T Consensus 177 -iqea~~s~~~m~QyHalglLyqirk~d-------rla~sklv~~~~~~~~~~~~A~~~lir~~~~~l~~~--------~ 240 (865)
T KOG1078|consen 177 -VQEAVNSDNIMVQYHALGLLYQIRKND-------RLAVSKLVQKFTRGSLKSPLAVCMLIRIASELLKEN--------Q 240 (865)
T ss_pred -hhhccCcHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHHccccccchhHHHHHHHHHHHHhhhc--------c
Confidence 122223334567888888888654322 124556665554432 111111111111111111 3
Q ss_pred CcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCcccccccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHHH
Q 001733 558 GIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRI 637 (1019)
Q Consensus 558 G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~a 637 (1019)
.+..++..++.+.-.+. ...+.-.|+.++.++..... + .+ ...+..|--++.. +.+.+|..|.++
T Consensus 241 ~~~s~~~~fl~s~l~~K-~emV~~EaArai~~l~~~~~-r----------~l--~pavs~Lq~flss-p~~~lRfaAvRt 305 (865)
T KOG1078|consen 241 QADSPLFPFLESCLRHK-SEMVIYEAARAIVSLPNTNS-R----------EL--APAVSVLQLFLSS-PKVALRFAAVRT 305 (865)
T ss_pred cchhhHHHHHHHHHhch-hHHHHHHHHHHHhhccccCH-h----------hc--chHHHHHHHHhcC-cHHHHHHHHHHH
Confidence 34445555554332111 12444555555666544321 1 11 1255666666666 889999999999
Q ss_pred HHHHhCCC
Q 001733 638 LQCLTKSP 645 (1019)
Q Consensus 638 L~~La~~~ 645 (1019)
|..++...
T Consensus 306 LnkvAm~~ 313 (865)
T KOG1078|consen 306 LNKVAMKH 313 (865)
T ss_pred HHHHHHhC
Confidence 99998644
No 147
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.69 E-value=0.13 Score=59.51 Aligned_cols=254 Identities=13% Similarity=0.124 Sum_probs=156.6
Q ss_pred hHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCC---chHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCcccc
Q 001733 435 GILVLITFKFNWSIDVFAAEIADQILRNLERNPD---NIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDSK 511 (1019)
Q Consensus 435 ~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~---n~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~ 511 (1019)
.+..+..+|+ +..|.++..|+.....|+..-. .-..+...|. .|.+-|....+++....+.++..+.+....+
T Consensus 605 ivStiL~~L~--~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~ 680 (975)
T COG5181 605 IVSTILKLLR--SKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFR 680 (975)
T ss_pred HHHHHHHHhc--CCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhccc
Confidence 4445556674 5678899999998888864322 2344555664 4788888888999888888888777654433
Q ss_pred ccc--ccchHHHHHHHHhcCChHHHHHHHHHHHHhhcCCcc----hHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHH
Q 001733 512 INV--PGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPS----CKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAA 585 (1019)
Q Consensus 512 ~~i--~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~----~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~ 585 (1019)
..- ..+.+|.|..+|++...++..+.+..+..+|...+. +..|. +---|++.|.+.+ .++++.|..
T Consensus 681 ~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~n-----KeiRR~A~~ 752 (975)
T COG5181 681 SMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSWN-----KEIRRNATE 752 (975)
T ss_pred ccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHhh-----HHHHHhhhh
Confidence 221 345789999999999999999999999999987764 44443 2223566666654 589999999
Q ss_pred HHHHHHhcCCCcccccccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHH
Q 001733 586 ILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLL 665 (1019)
Q Consensus 586 ~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv 665 (1019)
++.-++..- --++++..|+.-|+. |+.-.++-..++ ...+.+..|.-..+
T Consensus 753 tfG~Is~ai---------------GPqdvL~~LlnnLkv------qeRq~Rvctsva---------I~iVae~cgpfsVl 802 (975)
T COG5181 753 TFGCISRAI---------------GPQDVLDILLNNLKV------QERQQRVCTSVA---------ISIVAEYCGPFSVL 802 (975)
T ss_pred hhhhHHhhc---------------CHHHHHHHHHhcchH------HHHHhhhhhhhh---------hhhhHhhcCchhhH
Confidence 888876542 123444444444433 222222211111 12233333332333
Q ss_pred -Hhh---cCCCHHHHHHHHHHHHHhCcCCChhHHHHhhhcCCChhHhhcccCCCCcChHHHHHHHHHHhccCCC
Q 001733 666 -EVI---NNPHDELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCPTETIHITEKQAVSAKFLAKLPHQ 735 (1019)
Q Consensus 666 -~LL---~~~~~~vr~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~LV~lL~~~~~~~~~~~~A~~~L~nL~~~ 735 (1019)
.++ ..++..+|...+++++.+=.+.++...+.+- -..|.|-.-|.+.+ ..-+..|+.++..|..+
T Consensus 803 P~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy---~itPlleDAltDrD--~vhRqta~nvI~Hl~Ln 871 (975)
T COG5181 803 PTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVY---SITPLLEDALTDRD--PVHRQTAMNVIRHLVLN 871 (975)
T ss_pred HHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHH---HhhHHHHhhhcccc--hHHHHHHHHHHHHHhcC
Confidence 333 3456689999888888776554444333332 23455555665554 35566777788777653
No 148
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.67 E-value=0.0034 Score=46.80 Aligned_cols=40 Identities=23% Similarity=0.282 Sum_probs=36.0
Q ss_pred CCchHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 001733 467 PDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVL 506 (1019)
Q Consensus 467 ~~n~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~ 506 (1019)
++++..+++.|++++|+++|.+++++++..++++|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 3578888999999999999998899999999999999873
No 149
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.66 E-value=0.0034 Score=46.82 Aligned_cols=38 Identities=32% Similarity=0.188 Sum_probs=35.0
Q ss_pred hHHHHHHhCCchHHHHHHHhcCCcHHHHHHHHHHHhhhc
Q 001733 792 QILFLARTHNFTSVFTELLMKTSCDEVQKLAAIGLENLS 830 (1019)
Q Consensus 792 ~~~~~~~~~g~i~~Lv~LL~~~~~~~vk~~AA~aL~nLs 830 (1019)
+....+.+.|++|.|+++|++ +++.+++.|+++|.|++
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~-~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKS-EDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHc
Confidence 467788899999999999998 89999999999999986
No 150
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.47 E-value=3 Score=49.72 Aligned_cols=288 Identities=14% Similarity=0.139 Sum_probs=171.1
Q ss_pred cCCHHHHHHHHHHHHHHHhcccccchHHHhcCChHHHHHHhhcCC--HHHHHHHHHHHHhhccCChhHHHHHHhcCCHHH
Q 001733 319 AGSDRMVLEAIKDLQTVCQRKQYNKVQVRNVGVLPLLTKLLEYKD--RNVRCAAMELLRQLVVEDDEGKEMIAETMDISI 396 (1019)
Q Consensus 319 ~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~s~~--~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~ 396 (1019)
+.++..+.-|+..+...-.+ +++..+.. -|| ++|-|++ .-++..|+-+|..|-+.+++. +--.+....
T Consensus 122 srn~~fv~LAL~~I~niG~r--e~~ea~~~--DI~---KlLvS~~~~~~vkqkaALclL~L~r~spDl---~~~~~W~~r 191 (938)
T KOG1077|consen 122 SRNPTFVCLALHCIANIGSR--EMAEAFAD--DIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDL---VNPGEWAQR 191 (938)
T ss_pred cCCcHHHHHHHHHHHhhccH--hHHHHhhh--hhH---HHHhCCcchHHHHHHHHHHHHHHHhcCccc---cChhhHHHH
Confidence 34455566666665443221 22222211 234 5665543 446666666666665555432 223457899
Q ss_pred HHHHhcCCChhHHHHHHHHHHHhccC--hhhhhhhhcccchHHHHHHhhhcC-----------CCChHHHHHHHHHHHHh
Q 001733 397 LIKLLSSSHRPVRHESLLLLLELSST--RSLCEKIGSIPGGILVLITFKFNW-----------SIDVFAAEIADQILRNL 463 (1019)
Q Consensus 397 Lv~lL~~~~~~~r~~Aa~~L~~Ls~~--~~~~~~i~~~~g~I~~LV~lL~~~-----------~~~~~~~~~A~~aL~nL 463 (1019)
++.+|...+..+.-.++.++--|+.. ++.+..+. -++..|-.+.... -..|-.+...+.+|.+.
T Consensus 192 iv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~---~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~ 268 (938)
T KOG1077|consen 192 IVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLP---LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIY 268 (938)
T ss_pred HHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHH---HHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhC
Confidence 99999998888877888888877763 34444332 2333333332111 12466777777777777
Q ss_pred cC--CCCchHHHHhcCChHHHHHHhccC--CHHHHHH-H----HHHHHHhccCcccccccccchHHHHHHHHhcCChHHH
Q 001733 464 ER--NPDNIKCMAENGLLEPLMHHLNEG--SEEIQME-M----ASYLGEIVLGHDSKINVPGRAASTLIRMVHSGNSLTR 534 (1019)
Q Consensus 464 s~--~~~n~~~i~~~G~i~~Lv~lL~~~--~~~~~~~-a----a~~L~~La~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~ 534 (1019)
-. ++.++.++.+ .++.++...++. +..++.. | +.-.-+|+.+-+.-..+...++..|-++|.+....+|
T Consensus 269 p~~~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiR 346 (938)
T KOG1077|consen 269 PTPEDPSTRARLNE--VLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIR 346 (938)
T ss_pred CCCCCchHHHHHHH--HHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccch
Confidence 43 2334444433 333333333321 1222221 1 1122234443333333444567888899999889999
Q ss_pred HHHHHHHHHhhcCCcchHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCcccccccccCcccchhhh
Q 001733 535 RIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYV 614 (1019)
Q Consensus 535 ~~A~~aL~~Ls~~~~~~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~ 614 (1019)
-.|+..++.|++.....+.+... .+.++..|.... +..++++|+..|..+|.... .+.+
T Consensus 347 YLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkter----DvSirrravDLLY~mcD~~N---------------ak~I 405 (938)
T KOG1077|consen 347 YLALESMCKLASSEFSIDAVKKH--QDTIINSLKTER----DVSIRRRAVDLLYAMCDVSN---------------AKQI 405 (938)
T ss_pred hhhHHHHHHHHhccchHHHHHHH--HHHHHHHhcccc----chHHHHHHHHHHHHHhchhh---------------HHHH
Confidence 99999999999887666666554 566666666321 24899999999999987642 1567
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhC
Q 001733 615 VYNIIYMLKNSTPDELNVHLIRILQCLTK 643 (1019)
Q Consensus 615 i~~Ll~LL~~~~~~~v~~~a~~aL~~La~ 643 (1019)
|..|++.|.+ .+..+|+..+--.+-|+.
T Consensus 406 V~elLqYL~t-Ad~sireeivlKvAILaE 433 (938)
T KOG1077|consen 406 VAELLQYLET-ADYSIREEIVLKVAILAE 433 (938)
T ss_pred HHHHHHHHhh-cchHHHHHHHHHHHHHHH
Confidence 8889999988 888888876665555554
No 151
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.46 E-value=0.031 Score=65.12 Aligned_cols=294 Identities=16% Similarity=0.109 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHhccChhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHHHhcCChHHHHHHhc
Q 001733 408 VRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLN 487 (1019)
Q Consensus 408 ~r~~Aa~~L~~Ls~~~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~lL~ 487 (1019)
.+..+......|...+..-... ..+++..|+.+. +..|..++..|+.+|..|+..-.--.. .....+++|.
T Consensus 174 ~~~~~~~~~~~lg~~~ss~~~d--~~~~~~~l~~~~--~~~D~~Vrt~A~eglL~L~eg~kL~~~-----~Y~~A~~~ls 244 (823)
T KOG2259|consen 174 NRLLLYCFHLPLGVSPSSLTHD--REHAARGLIYLE--HDQDFRVRTHAVEGLLALSEGFKLSKA-----CYSRAVKHLS 244 (823)
T ss_pred chHHHHHHhhhcccCCCccccc--HHHHHHHHHHHh--cCCCcchHHHHHHHHHhhcccccccHH-----HHHHHHHHhc
Confidence 3444455555555443322222 134444466666 466788899999998888752211111 3456788999
Q ss_pred cCCHHHHHHHHHHHHHhcc-C--c----ccccccccchHHHHHHHHhcCChHHHHHHHHHHHHhhcCCcchHHHHHcCcH
Q 001733 488 EGSEEIQMEMASYLGEIVL-G--H----DSKINVPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIV 560 (1019)
Q Consensus 488 ~~~~~~~~~aa~~L~~La~-~--~----~~~~~i~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~~~~l~~~G~v 560 (1019)
+..+.++..|+.+++-.+. . + .........+...+-..+++.+..++-.|+.+|+.+-.-++. ++..-.=
T Consensus 245 D~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee---~i~QTLd 321 (823)
T KOG2259|consen 245 DDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEE---IIQQTLD 321 (823)
T ss_pred chHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHH---HHHHHHH
Confidence 9999999988765554443 2 1 122233335677888888888888888898888777644332 1111111
Q ss_pred HHHHHHHhhhccCCCChhHHHHHHHHHHHH-HhcCCCc----ccccccccCcccchhhhHHHHHHHHcCCCCHHHHHHHH
Q 001733 561 QVMAEEMFIRIIHNEPMNSKEEAAAILANI-LESGLEH----HSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLI 635 (1019)
Q Consensus 561 ~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L-~~~~~~~----~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~ 635 (1019)
..++.-++... ...+.......+- ++++..| ..-.+|++..-+...|.-..+++-|.. +--+++.+|+
T Consensus 322 KKlms~lRRkr------~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlED-Ef~EVR~AAV 394 (823)
T KOG2259|consen 322 KKLMSRLRRKR------TAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLED-EFYEVRRAAV 394 (823)
T ss_pred HHHhhhhhhhh------hcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechH-HHHHHHHHHH
Confidence 11111122111 1112222222222 0011001 000112222334455666677777766 6678999999
Q ss_pred HHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHhCcCCChhHHHHhhhcCCChhHhhcccCCC
Q 001733 636 RILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCPTET 715 (1019)
Q Consensus 636 ~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~~vr~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~LV~lL~~~ 715 (1019)
..++.|+.+...... .++.-|++++++....+|..|..+|..++.+. .++ +..++.+...|.+.
T Consensus 395 ~Sl~~La~ssP~FA~--------~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l------~i~--eeql~~il~~L~D~ 458 (823)
T KOG2259|consen 395 ASLCSLATSSPGFAV--------RALDFLVDMFNDEIEVVRLKAIFALTMISVHL------AIR--EEQLRQILESLEDR 458 (823)
T ss_pred HHHHHHHcCCCCcHH--------HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh------eec--HHHHHHHHHHHHhc
Confidence 999999987655221 35778999999999999999999999998641 223 23566667777665
Q ss_pred CcChHHHHHHHHHHhccCCCChh
Q 001733 716 IHITEKQAVSAKFLAKLPHQNLT 738 (1019)
Q Consensus 716 ~~~~~~~~~A~~~L~nL~~~~~~ 738 (1019)
+ .+++.+.--+|++.--.+.+
T Consensus 459 s--~dvRe~l~elL~~~~~~d~~ 479 (823)
T KOG2259|consen 459 S--VDVREALRELLKNARVSDLE 479 (823)
T ss_pred C--HHHHHHHHHHHHhcCCCcHH
Confidence 4 68888888888887654443
No 152
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.39 E-value=0.32 Score=57.15 Aligned_cols=250 Identities=16% Similarity=0.100 Sum_probs=161.5
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHhccChhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCC-------
Q 001733 394 ISILIKLLSSSHRPVRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERN------- 466 (1019)
Q Consensus 394 i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~------- 466 (1019)
...++.+...++..+|..|+..|..|+..-..- .-+....+++++ .++..+++.|..+++-....
T Consensus 200 ~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~------~~~Y~~A~~~ls--D~~e~VR~aAvqlv~v~gn~~p~~~e~ 271 (823)
T KOG2259|consen 200 ARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLS------KACYSRAVKHLS--DDYEDVRKAAVQLVSVWGNRCPAPLER 271 (823)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhccccccc------HHHHHHHHHHhc--chHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 344888888889999999999999987632221 224456677774 45667888887776655421
Q ss_pred CCchHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCcccccccccchH-HHHHH-HHhcC-ChHHHHHHHHHHHH
Q 001733 467 PDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDSKINVPGRAA-STLIR-MVHSG-NSLTRRIAFKALMQ 543 (1019)
Q Consensus 467 ~~n~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~i~~~~i-~~Lv~-lL~~~-~~~~~~~A~~aL~~ 543 (1019)
..+..++.++ ++..+.+.+++.+-.++-.|+.+|+.+-.. .+..+ ..|-+ +++.- -.+.....-..|..
T Consensus 272 e~~e~kl~D~-aF~~vC~~v~D~sl~VRV~AaK~lG~~~~v-------See~i~QTLdKKlms~lRRkr~ahkrpk~l~s 343 (823)
T KOG2259|consen 272 ESEEEKLKDA-AFSSVCRAVRDRSLSVRVEAAKALGEFEQV-------SEEIIQQTLDKKLMSRLRRKRTAHKRPKALYS 343 (823)
T ss_pred hhhhhhhHHH-HHHHHHHHHhcCceeeeehHHHHhchHHHh-------HHHHHHHHHHHHHhhhhhhhhhcccchHHHHh
Confidence 1233444443 566778888888888888899888865431 11222 22222 22200 00111111111211
Q ss_pred hh---c------------CCcchHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCcccccccccCcc
Q 001733 544 IS---S------------HHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHT 608 (1019)
Q Consensus 544 Ls---~------------~~~~~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~ 608 (1019)
=. + .++....++..|+-..++.-|...- .++++.|...+..|+.+.++..
T Consensus 344 ~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf-----~EVR~AAV~Sl~~La~ssP~FA---------- 408 (823)
T KOG2259|consen 344 SGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEF-----YEVRRAAVASLCSLATSSPGFA---------- 408 (823)
T ss_pred cCCcccCccccccCchhhccccccccccccccceeeeechHHH-----HHHHHHHHHHHHHHHcCCCCcH----------
Confidence 11 0 1112345777888888887666432 4899999999999998866542
Q ss_pred cchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHhC
Q 001733 609 MVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTLS 687 (1019)
Q Consensus 609 l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~~vr~~A~~~L~~Ls 687 (1019)
...+.-|+++++. ....++..|+.+|..++.+-.-.+ .-++.+..-|.+.+.++|.+...+|.+.-
T Consensus 409 ---~~aldfLvDMfND-E~~~VRL~ai~aL~~Is~~l~i~e---------eql~~il~~L~D~s~dvRe~l~elL~~~~ 474 (823)
T KOG2259|consen 409 ---VRALDFLVDMFND-EIEVVRLKAIFALTMISVHLAIRE---------EQLRQILESLEDRSVDVREALRELLKNAR 474 (823)
T ss_pred ---HHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHheecH---------HHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 4578889999998 889999999999999987533222 33556677888899999998888877654
No 153
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.39 E-value=0.037 Score=59.01 Aligned_cols=178 Identities=16% Similarity=0.115 Sum_probs=107.7
Q ss_pred CCHHHHHHHHHHHHHHHhcc--cccchHHHhc--CChHHHHHHhhcCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHH
Q 001733 320 GSDRMVLEAIKDLQTVCQRK--QYNKVQVRNV--GVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDIS 395 (1019)
Q Consensus 320 ~~~~~~~~Al~~L~~l~~~~--~~~r~~i~~~--g~i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~ 395 (1019)
.+=+.+.+|+..|+.+++.+ ..+...+.+. ..++.++..+.+....+...|+.++..++..-...-... -...+|
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~~~l~ 97 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY-ADILLP 97 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH-HHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH-HHHHHH
Confidence 44467889999999999988 2233222221 455677777777778888999999888874222221111 245789
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHhccChhhhhhhhcccch-HHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCC-chHHH
Q 001733 396 ILIKLLSSSHRPVRHESLLLLLELSSTRSLCEKIGSIPGG-ILVLITFKFNWSIDVFAAEIADQILRNLERNPD-NIKCM 473 (1019)
Q Consensus 396 ~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~~~~~~~i~~~~g~-I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~-n~~~i 473 (1019)
.|++.+.++...++..|..+|..+...-... ... ++.+...+ .+.++.++..++..|..+...-. +...+
T Consensus 98 ~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~------~~~~~~~l~~~~--~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l 169 (228)
T PF12348_consen 98 PLLKKLGDSKKFIREAANNALDAIIESCSYS------PKILLEILSQGL--KSKNPQVREECAEWLAIILEKWGSDSSVL 169 (228)
T ss_dssp HHHHGGG---HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHT--T-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred HHHHHHccccHHHHHHHHHHHHHHHHHCCcH------HHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence 9999999988899999999999987643311 122 23344444 46788999999999988864322 22222
Q ss_pred Hh----cCChHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 001733 474 AE----NGLLEPLMHHLNEGSEEIQMEMASYLGEIVL 506 (1019)
Q Consensus 474 ~~----~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~ 506 (1019)
-. ...++.+...+.+++++++..|-.++..+..
T Consensus 170 ~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 170 QKSAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp --HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 11 2467888899999999999999999998865
No 154
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.35 E-value=0.0043 Score=64.63 Aligned_cols=66 Identities=23% Similarity=0.481 Sum_probs=54.3
Q ss_pred cccccCcccCCCceec-CCCccccHHHHHHHHhhhccCCCCCCCCCCCC-CCCCCCccCHhHHHHHHHHHHH
Q 001733 234 FYCPLTKEIMDDPVTI-ESGVTYERNAITAWFEKFETSGDIFCPTTGKK-LMSRGLNTNVALKTTIEEWKDR 303 (1019)
Q Consensus 234 ~~Cpi~~~~m~dPv~~-~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~-l~~~~l~pn~~Lr~~I~~w~~~ 303 (1019)
+.||.|+.+++.|+-. +|||+||..||+..+-+ ....||.|... .--..+.|++.-+.-|+.+...
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~d----sDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkk 342 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLD----SDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKK 342 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhh----ccccCCCcccccchhhccCccHHHHHHHHHHHHH
Confidence 9999999999999988 88999999999988776 46789999763 2234678888877778877654
No 155
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.27 E-value=0.0035 Score=54.12 Aligned_cols=48 Identities=23% Similarity=0.368 Sum_probs=35.4
Q ss_pred cccccCcccCCC-ceec-CCCccccHHHHHHHHhhhccCCCCCCCCCCCCCC
Q 001733 234 FYCPLTKEIMDD-PVTI-ESGVTYERNAITAWFEKFETSGDIFCPTTGKKLM 283 (1019)
Q Consensus 234 ~~Cpi~~~~m~d-Pv~~-~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~ 283 (1019)
-.||.|..-=.| |++. .|||.|-..||.+|++.. .....||.||++..
T Consensus 33 g~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~--~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 33 GCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQ--SSKGQCPMCRQPWK 82 (85)
T ss_pred cCCCCccCCCCCCceeeccCccHHHHHHHHHHHccc--cCCCCCCCcCCeee
Confidence 445555444334 7666 999999999999999973 24578999999754
No 156
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.003 Score=71.47 Aligned_cols=69 Identities=17% Similarity=0.326 Sum_probs=54.0
Q ss_pred CCCccccccCcccCCCceecCCCccccHHHHHHHHhhhccCCCCCCCCCCCCCCCCC-----CccCHhHHHHHHHHHHH
Q 001733 230 LYETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRG-----LNTNVALKTTIEEWKDR 303 (1019)
Q Consensus 230 ~~~~~~Cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~~~~-----l~pn~~Lr~~I~~w~~~ 303 (1019)
+..+|-|-||...+.+||+.||||+||+.||.+-.+. ...||.|+.++.... ..+|+.+..+|..|++.
T Consensus 81 ~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~-----~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~ 154 (398)
T KOG4159|consen 81 IRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQ-----ETECPLCRDELVELPALEQALSLNRLLCKLITKFLEG 154 (398)
T ss_pred ccchhhhhhhHhhcCCCccccccccccHHHHHHHhcc-----CCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 6789999999999999999999999999999996654 567999999886521 22355555666666644
No 157
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.19 E-value=0.14 Score=62.85 Aligned_cols=222 Identities=15% Similarity=0.135 Sum_probs=151.0
Q ss_pred HHHHHHHHHHh---cccccchHHHhcCChHHHHHHhhcCCHHHHHHHHHHHHh-hccCChhHHHHHHhcCCHHHHHHHhc
Q 001733 327 EAIKDLQTVCQ---RKQYNKVQVRNVGVLPLLTKLLEYKDRNVRCAAMELLRQ-LVVEDDEGKEMIAETMDISILIKLLS 402 (1019)
Q Consensus 327 ~Al~~L~~l~~---~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~Al~~L~~-La~~~~~~k~~I~~~g~i~~Lv~lL~ 402 (1019)
.-++.|..|++ -.+-.-..-..-|..|-.+++|++...+.+---+-+=.. |+ -++.++..+++.++=..++.+|.
T Consensus 486 HRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILA-vD~SCQ~dLvKe~g~~YF~~vL~ 564 (1387)
T KOG1517|consen 486 HRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILA-VDPSCQADLVKENGYKYFLQVLD 564 (1387)
T ss_pred HHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHh-cCchhHHHHHhccCceeEEEEec
Confidence 33444444443 333333444557999999999999877776544433333 44 67888888888777777777886
Q ss_pred C-C--ChhHHHHHHHHHHHhccChhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhc-CCCCchHHHHhcCC
Q 001733 403 S-S--HRPVRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLE-RNPDNIKCMAENGL 478 (1019)
Q Consensus 403 ~-~--~~~~r~~Aa~~L~~Ls~~~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs-~~~~n~~~i~~~G~ 478 (1019)
. + +++-|..|+-+|..+..+-..-++-.-..+.|..-...|.++ ..+-.+.=.+-+|..|- .++.+|..=++.++
T Consensus 565 ~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~-~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~A 643 (1387)
T KOG1517|consen 565 PSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDD-PEPLLRQWLCICLGRLWEDYDEARWSGRRDNA 643 (1387)
T ss_pred CcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCC-ccHHHHHHHHHHHHHHhhhcchhhhccccccH
Confidence 6 2 236777888888888776433333223356666666667422 25666777888888885 56677777788899
Q ss_pred hHHHHHHhccCCHHHHHHHHHHHHHhccC-----ccccccc------------ccchHH----HHHHHHhcCChHHHHHH
Q 001733 479 LEPLMHHLNEGSEEIQMEMASYLGEIVLG-----HDSKINV------------PGRAAS----TLIRMVHSGNSLTRRIA 537 (1019)
Q Consensus 479 i~~Lv~lL~~~~~~~~~~aa~~L~~La~~-----~~~~~~i------------~~~~i~----~Lv~lL~~~~~~~~~~A 537 (1019)
.+.|+.+|.+..++++..|+.+|..+..+ ++....+ .+..++ .++.+++.+++-++..-
T Consensus 644 hekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev 723 (1387)
T KOG1517|consen 644 HEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEV 723 (1387)
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHH
Confidence 99999999999999999999999988763 3332222 222233 67777888888888887
Q ss_pred HHHHHHhhcCCcc
Q 001733 538 FKALMQISSHHPS 550 (1019)
Q Consensus 538 ~~aL~~Ls~~~~~ 550 (1019)
+-+|.++.....+
T Consensus 724 ~v~ls~~~~g~~~ 736 (1387)
T KOG1517|consen 724 VVALSHFVVGYVS 736 (1387)
T ss_pred HHHHHHHHHhhHH
Confidence 7777777765544
No 158
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.0042 Score=65.57 Aligned_cols=49 Identities=12% Similarity=0.103 Sum_probs=43.3
Q ss_pred ccccccCcccCCCceecCCCccccHHHHHHHHhhhccCCCCCCCCCCCCCCCC
Q 001733 233 TFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSR 285 (1019)
Q Consensus 233 ~~~Cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~~~ 285 (1019)
.--||||..-|..||.++|+|.||.-||+--... +..+||+|+.++.+.
T Consensus 7 ~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~n----dk~~CavCR~pids~ 55 (324)
T KOG0824|consen 7 KKECLICYNTGNCPVNLYCFHKFCYICIKGSYKN----DKKTCAVCRFPIDST 55 (324)
T ss_pred CCcceeeeccCCcCccccccchhhhhhhcchhhc----CCCCCceecCCCCcc
Confidence 3459999999999999999999999999987666 578899999998764
No 159
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=95.79 E-value=0.0042 Score=61.03 Aligned_cols=52 Identities=23% Similarity=0.335 Sum_probs=41.8
Q ss_pred hccccCCCCccccccCcccCCCceecCCCccccHHHHHHHHhhhccCCCCCCCCCCCCC
Q 001733 224 AQYIEPLYETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKL 282 (1019)
Q Consensus 224 ~~~~~~~~~~~~Cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l 282 (1019)
..+.+.|| |.|-||.+-++.||+..|||.||-.|-.+-... ...|-+|+...
T Consensus 189 ~~~~e~IP--F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k-----g~~C~~Cgk~t 240 (259)
T COG5152 189 SGPGEKIP--FLCGICKKDYESPVVTECGHSFCSLCAIRKYQK-----GDECGVCGKAT 240 (259)
T ss_pred cCCCCCCc--eeehhchhhccchhhhhcchhHHHHHHHHHhcc-----CCcceecchhh
Confidence 34444555 999999999999999999999999997666655 35799998754
No 160
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=95.74 E-value=0.036 Score=50.37 Aligned_cols=64 Identities=22% Similarity=0.365 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhcccccchHHHhcCChHHHHHHhh--cCCHHHHHHHHHHHHhhccCChhHHHHHHh
Q 001733 327 EAIKDLQTVCQRKQYNKVQVRNVGVLPLLTKLLE--YKDRNVRCAAMELLRQLVVEDDEGKEMIAE 390 (1019)
Q Consensus 327 ~Al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~--s~~~~~~~~Al~~L~~La~~~~~~k~~I~~ 390 (1019)
..++-|..+|.+++.++..+.+.|+||.++.... ..+|-++++|+.++++|+..+++|+..|.+
T Consensus 5 ~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 5 DLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 4566788999999999999999999999998754 468999999999999999999999999875
No 161
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.72 E-value=0.0056 Score=68.66 Aligned_cols=54 Identities=19% Similarity=0.326 Sum_probs=46.5
Q ss_pred CccccccCcccCCCceecCCCccccHHHHHHHHhhhccCCCCCCCCCCCCCCCC
Q 001733 232 ETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSR 285 (1019)
Q Consensus 232 ~~~~Cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~~~ 285 (1019)
.+..|.+|.+.-+||+...|.|+|||-||.++...+..+.+.+||.|...|+-.
T Consensus 535 ~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred CceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 467899999999999999999999999999998876533468999999887654
No 162
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.0073 Score=66.50 Aligned_cols=46 Identities=17% Similarity=0.442 Sum_probs=40.2
Q ss_pred cccccCcccCCC---ceecCCCccccHHHHHHHHhhhccCCCCCCCCCCCCCC
Q 001733 234 FYCPLTKEIMDD---PVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLM 283 (1019)
Q Consensus 234 ~~Cpi~~~~m~d---Pv~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~ 283 (1019)
++|-||+|-|++ =.++||+|.|=..||-.|+.. ...+||+|++...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~----~r~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQ----TRTFCPVCKRDIR 278 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhh----cCccCCCCCCcCC
Confidence 699999999987 557899999999999999998 4567999998653
No 163
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.57 E-value=0.0059 Score=73.64 Aligned_cols=46 Identities=22% Similarity=0.546 Sum_probs=41.4
Q ss_pred CCccccccCcccCCC-----ceecCCCccccHHHHHHHHhhhccCCCCCCCCCCCC
Q 001733 231 YETFYCPLTKEIMDD-----PVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKK 281 (1019)
Q Consensus 231 ~~~~~Cpi~~~~m~d-----Pv~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~ 281 (1019)
..+-.|+||.|.|.. |-.++|||.|...|+.+|+++ ..+||.|+..
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-----~qtCP~CR~~ 339 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-----QQTCPTCRTV 339 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-----hCcCCcchhh
Confidence 347899999999999 788899999999999999998 4689999884
No 164
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=95.57 E-value=7.6 Score=48.80 Aligned_cols=424 Identities=20% Similarity=0.210 Sum_probs=204.6
Q ss_pred ChHHHHHHhhc--------CCHHHHHHHHHHHHhhccCChhH--HHHHHhcCCHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 001733 351 VLPLLTKLLEY--------KDRNVRCAAMELLRQLVVEDDEG--KEMIAETMDISILIKLLSSSHRPVRHESLLLLLELS 420 (1019)
Q Consensus 351 ~i~~Lv~lL~s--------~~~~~~~~Al~~L~~La~~~~~~--k~~I~~~g~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls 420 (1019)
++|.+++-|.. ....+|..|+-..+.+++....+ +. +...=+-..++..+-+.....|..|.++|.+.
T Consensus 421 VvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p-~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~- 498 (1133)
T KOG1943|consen 421 VVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKP-VLQSLASALLIVALFDREVNCRRAASAALQEN- 498 (1133)
T ss_pred HHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhH-HHHHHHHHHHHHHhcCchhhHhHHHHHHHHHH-
Confidence 35555555542 23568888888888887543322 22 11111122233444456678999999998765
Q ss_pred cChhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCC-CchHHHHh-cCChHHHHHHhcc-----CCHHH
Q 001733 421 STRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNP-DNIKCMAE-NGLLEPLMHHLNE-----GSEEI 493 (1019)
Q Consensus 421 ~~~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~-~n~~~i~~-~G~i~~Lv~lL~~-----~~~~~ 493 (1019)
+|+ .|-+|.=+.+.. ..|- -++.+.+.+- +-+..+++ .|+..++++.|.. -++.+
T Consensus 499 --------VGR-~~n~p~Gi~Lis--~~dy-------~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~i 560 (1133)
T KOG1943|consen 499 --------VGR-QGNFPHGISLIS--TIDY-------FSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKI 560 (1133)
T ss_pred --------hcc-CCCCCCchhhhh--hcch-------hhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHH
Confidence 343 333322222221 1111 1222222211 12234443 3777777776643 47899
Q ss_pred HHHHHHHHHHhccC-cccccccccchHHHHHHHHhcCChHHHHHHHHHHHHhhcCCcch----HHHHH---cC---cHHH
Q 001733 494 QMEMASYLGEIVLG-HDSKINVPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSC----KILVE---AG---IVQV 562 (1019)
Q Consensus 494 ~~~aa~~L~~La~~-~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~~----~~l~~---~G---~v~~ 562 (1019)
++.++.+|.+|+.. ++ .+....+|+|+....+++...+.-+..+...+....... ..+.+ +| .+++
T Consensus 561 relaa~aL~~Ls~~~pk---~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~ 637 (1133)
T KOG1943|consen 561 RELAAYALHKLSLTEPK---YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPP 637 (1133)
T ss_pred HHHHHHHHHHHHHhhHH---hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccH
Confidence 99999999998863 32 122346899999888888877766555544443221111 11111 23 2333
Q ss_pred HHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCcccccccccCcccchhhhHHHHHHHHcCC--CCHHHHHHHHHHHHH
Q 001733 563 MAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNS--TPDELNVHLIRILQC 640 (1019)
Q Consensus 563 Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~--~~~~v~~~a~~aL~~ 640 (1019)
+..--...+. ..-.+..-+..+.++..+.. .+..+-++...-.++... ....+|..|.+++..
T Consensus 638 ~~~~~~~rg~---~~lmr~~~~~~Ie~~s~s~~------------~~~~~~v~e~~~~ll~~~l~~~n~i~~~av~av~~ 702 (1133)
T KOG1943|consen 638 ICDRYFYRGQ---GTLMRQATLKFIEQLSLSKD------------RLFQDFVIENWQMLLAQNLTLPNQIRDAAVSAVSD 702 (1133)
T ss_pred HHHHHhccch---HHHHHHHHHHHHHHhhhccc------------hhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 3322222210 01122222333333333321 111222333233332210 223788999999988
Q ss_pred HhCCCCchHHHHHHHHHcCChHHHHHhhcCC-CHHHHHHHHHHHHHhCcC-CChhHHHHhhhcCCChhHhhcccCCCCcC
Q 001733 641 LTKSPKPMATIVSVIKETEASYSLLEVINNP-HDELAVAAIKLLTTLSPY-LGHTLVERLCKTRGQPENLIQCPTETIHI 718 (1019)
Q Consensus 641 La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~-~~~vr~~A~~~L~~Ls~~-~~~~~~~~l~~~~g~i~~LV~lL~~~~~~ 718 (1019)
+++.--.. +...+...+...+.-+..+ ++.+|+.-.-++..+... .....++.++ ..+.....+.- .
T Consensus 703 l~s~y~~~----d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~i~~~~q~~lc------~~~l~~~p~d~-~ 771 (1133)
T KOG1943|consen 703 LVSTYVKA----DEGEEAPLITRYLSRLTKCSEERIRRGLILALGVLPSELIHRHLQEKLC------KLVLELLPSDA-W 771 (1133)
T ss_pred HHHHHHhc----CchhhhHHHHHHHHHhcCchHHHHHHHHHHHHccCcHHhhchHHHHHHH------HHHhccCcccc-c
Confidence 87511000 0000111233445555555 456777777777666621 1122233333 22333332221 2
Q ss_pred hHHHHHHHHHHhccCCCChhhHHHHHhCC----ChHHHHHHHHhhhccCCCccchhhhHHHHHHHHHHHHhcCCCchhHH
Q 001733 719 TEKQAVSAKFLAKLPHQNLTLNLALSARN----VVPTILQTINLIQRSGTRTSRYASAYLEGLIGILVRFTTTLYEPQIL 794 (1019)
Q Consensus 719 ~~~~~~A~~~L~nL~~~~~~~~~~l~~~g----~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~lt~~~~~~~~~ 794 (1019)
.+.+...+..+..+... .+ .....+ ....|++.|.+- ........-.|+.+.++.++..++.....|+
T Consensus 772 a~aR~~~V~al~~v~~~---~~-~~~~~~~~~k~~e~LL~~lddY--ttd~rGDVGswVReaAm~al~~~~~~l~~p~-- 843 (1133)
T KOG1943|consen 772 AEARQQNVKALAHVCKT---VT-SLLFSESIEKFRETLLNALDDY--TTDSRGDVGSWVREAAMKALSSLLDTLSSPK-- 843 (1133)
T ss_pred HHHHHHHHHHHHHHHHH---HH-HhhccccHHHHHHHHHHHHhhc--ccccCccHHHHHHHHHHHHHHhhhhhhcCcc--
Confidence 45566666655554321 11 111222 234455555542 1222234678999999999987775431111
Q ss_pred HHHHhCCchHHH-HHHHhcC--CcHHHHHHHHHHHhhhcccC
Q 001733 795 FLARTHNFTSVF-TELLMKT--SCDEVQKLAAIGLENLSSES 833 (1019)
Q Consensus 795 ~~~~~~g~i~~L-v~LL~~~--~~~~vk~~AA~aL~nLs~~~ 833 (1019)
..+.+.+... .-+++-. .-+..+..||.++..+...+
T Consensus 844 --~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi~~~~ 883 (1133)
T KOG1943|consen 844 --LLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQIVVHS 883 (1133)
T ss_pred --cccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhceeecC
Confidence 1222333222 2244441 23456888888888877664
No 165
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=95.47 E-value=0.33 Score=54.88 Aligned_cols=461 Identities=12% Similarity=0.074 Sum_probs=211.1
Q ss_pred HHHHhc-cCCHHHHHHHHHHHHHhccC-cccccccc--cchHHHHHHHHhcCChHHHHHHHHHHHHhhcCCcchHHHHHc
Q 001733 482 LMHHLN-EGSEEIQMEMASYLGEIVLG-HDSKINVP--GRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEA 557 (1019)
Q Consensus 482 Lv~lL~-~~~~~~~~~aa~~L~~La~~-~~~~~~i~--~~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~~~~l~~~ 557 (1019)
|+..|. +.++.+...++.+|++|..+ |-.+..+. -..+..+-.++++.++.++-.++.++..|.+.+.-...+.
T Consensus 111 l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~~~~pei~-- 188 (728)
T KOG4535|consen 111 LLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTHAPLPEVQ-- 188 (728)
T ss_pred HHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCCHHHH--
Confidence 344443 45677888999999999984 33343332 2345566678888899999999999988877654322211
Q ss_pred CcHHHHHHHHhh------hccCCCChhHHHH-HHHHHHHHHhcCCCcc---cccccccC--cc-c-chhhhHHHHHHHHc
Q 001733 558 GIVQVMAEEMFI------RIIHNEPMNSKEE-AAAILANILESGLEHH---SLQVNSHG--HT-M-VSDYVVYNIIYMLK 623 (1019)
Q Consensus 558 G~v~~Lv~lL~~------~~~~~~~~~~~~~-A~~~L~~L~~~~~~~~---~~~v~~~g--~~-l-~~~~~i~~Ll~LL~ 623 (1019)
.++++--+ .+. +.++-.|+- +...+..+..+.+... +-.++.-- .. . ...-........+.
T Consensus 189 ----~~~~~~~s~~n~~~~h~-s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~ 263 (728)
T KOG4535|consen 189 ----LLLQQPCSSSNSATPHL-SPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAG 263 (728)
T ss_pred ----HHhcCCCccccccCCCC-CChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhc
Confidence 11110000 000 011112211 1112333322221110 00000000 00 0 00111122222332
Q ss_pred CC-CCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHhCcCCChhHHHHhhhc-
Q 001733 624 NS-TPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTLSPYLGHTLVERLCKT- 701 (1019)
Q Consensus 624 ~~-~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~~vr~~A~~~L~~Ls~~~~~~~~~~l~~~- 701 (1019)
.. ....++..+..+|..++.+-.-. +....+ ....+-.-+....+.++..+.++|..+..... ++....+
T Consensus 264 ~~~~ps~~rle~~qvl~~~a~~~~~~---~~~~~~--l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv---~~~~P~~~ 335 (728)
T KOG4535|consen 264 STYEPSPMRLEALQVLTLLARYFSMT---QAYLME--LGRVICKCMGEADPSIQLHGAKLLEELGTGLI---QQYKPDST 335 (728)
T ss_pred CccCCchhHHHHHHHHHHHHHHHHHH---HHHHHH--HHHHHHccCCCCChHHHHHHHHHHHHHHHHHh---hhcCCCcc
Confidence 21 45678888888888887643210 011111 11112223345678899999988887763211 0111100
Q ss_pred --CCChhHhhcccCCCC--------cChHHHHHHHHHHhccCCCChhhHHHHHhCCChHHHHHHHHhhhccCCCccchhh
Q 001733 702 --RGQPENLIQCPTETI--------HITEKQAVSAKFLAKLPHQNLTLNLALSARNVVPTILQTINLIQRSGTRTSRYAS 771 (1019)
Q Consensus 702 --~g~i~~LV~lL~~~~--------~~~~~~~~A~~~L~nL~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~ 771 (1019)
+-.-..+..++..+. .....+..++-.++++....... ...|--.....++..+. ++...
T Consensus 336 k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~----lpn~~~T~~~~Fl~GC~------d~~~~ 405 (728)
T KOG4535|consen 336 KAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSN----LPNDRQTLCITFLLGCN------DSKNR 405 (728)
T ss_pred cchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcC----CCCcchhhhHHHHhccc------chHHH
Confidence 001111222222111 02234455555666654310000 00000011122222110 00111
Q ss_pred hHHHHHHHHHHHHhcCCCchhHHHH-HHhCCchHHHHHHHhcCCcHHHHHHHHHHHhhhcccCCcCCCCCCcCCcccccc
Q 001733 772 AYLEGLIGILVRFTTTLYEPQILFL-ARTHNFTSVFTELLMKTSCDEVQKLAAIGLENLSSESINLSKPPQIKSKKFMKF 850 (1019)
Q Consensus 772 ~~~e~a~~aL~~lt~~~~~~~~~~~-~~~~g~i~~Lv~LL~~~~~~~vk~~AA~aL~nLs~~~~~l~~~~~~~~~~~~~~ 850 (1019)
-+...+..++.-+. + +|..+.. ..-.+........|.+ ....+|..|||+++|++.-- ....|
T Consensus 406 lv~~aA~Ra~~VyV--L-Hp~lr~d~~fv~~aa~~il~sl~d-~~ln~r~KaawtlgnITdAL--~~~~P---------- 469 (728)
T KOG4535|consen 406 LVKAAASRALGVYV--L-HPCLRQDVIFVADAANAILMSLED-KSLNVRAKAAWSLGNITDAL--IVNMP---------- 469 (728)
T ss_pred HHHHHHHhhceeEE--e-ccchhhhHHHHHHHHHHHHHHhhh-HhHhHHHHHHHHhhhhHHHH--HcCCC----------
Confidence 11122222221111 1 3332221 1112333444455666 67899999999999997421 11111
Q ss_pred cccCcccccCCCCCCCCCCCcccCCccccCccchhhhccchHHHHhhh---ccCchhhHHHHHHHHHhhhccCcchhh-H
Q 001733 851 FSLPKSLSVGSSKKKSVSLCPVHRGACSSQNTFCLIDAKAVDRLLACL---YHENVEVVEAALSALCTLLDEKVDVDK-S 926 (1019)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~c~v~~~~cs~~~~~~Lv~~gai~~Lv~lL---~~~d~~v~~~Al~AL~~L~~d~~~~~~-~ 926 (1019)
.+ ....|.+ -+--+..+++.- ..++..|+..|..||.|+++--..+++ +
T Consensus 470 ----s~---------~s~~eR~--------------sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~ 522 (728)
T KOG4535|consen 470 ----TP---------DSFQERF--------------SGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPT 522 (728)
T ss_pred ----Cc---------hHHHHHH--------------HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhcc
Confidence 00 0001111 111122333322 235678999999999999863111111 1
Q ss_pred HHHHHhccchHHHHH-HHhhcChhhHHHHHHHHHHHHHhhCCccccc-cccccccchHHHHHH-hhcCCchhhHHHHHHH
Q 001733 927 VSMLSEVNAIQHVLN-VVKEHRQEVLQQKSFWMIERFLVKGGNKQAS-DISQDRLLPATLVSA-FHHGDVNTRQMAEKIL 1003 (1019)
Q Consensus 927 ~~~i~~~~~i~~l~~-lL~~~~~~~~~~~A~~aL~~i~~~~~~~~~~-~~~~~~~~~~~Lv~l-l~~~~~~~~~~Aa~~L 1003 (1019)
...+.+ +.+..++. ... -.+-.++=+|..++.++|.++.-.... ...+ .....|..+ .+..|..+|..||.+|
T Consensus 523 ~~e~~~-~~~~~l~~~v~~-~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~--~~F~~L~~Lv~~~~NFKVRi~AA~aL 598 (728)
T KOG4535|consen 523 FAEIIE-ESIQALISTVLT-EAAMKVRWNACYAMGNLFKNPALPLQTAPWAS--QAFNALTSLVTSCKNFKVRIRAAAAL 598 (728)
T ss_pred HHHHHH-HHHHhcccceec-ccccccchHHHHHHHHhhcCccccccCCCchH--HHHHHHHHHHHHhccceEeehhhhhh
Confidence 222322 33333322 232 356789999999999999984433333 2222 223446665 4566789999999999
Q ss_pred HHhccCCCCCC
Q 001733 1004 RHLNKMPNFSA 1014 (1019)
Q Consensus 1004 ~~L~~~~~~s~ 1014 (1019)
..-.+-.+|+.
T Consensus 599 ~vp~~re~~~d 609 (728)
T KOG4535|consen 599 SVPGKREQYGD 609 (728)
T ss_pred cCCCCcccchh
Confidence 98777666653
No 166
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.42 E-value=0.012 Score=63.91 Aligned_cols=54 Identities=20% Similarity=0.392 Sum_probs=42.9
Q ss_pred CCCccccccCcccCCC--ce--ecCCCccccHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCcc
Q 001733 230 LYETFYCPLTKEIMDD--PV--TIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNT 289 (1019)
Q Consensus 230 ~~~~~~Cpi~~~~m~d--Pv--~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~~~~l~p 289 (1019)
-...|.||||+..|.. +. +.+|||.|...+|.+.- . ...||+|+.++...++++
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~-----~~~Cp~c~~~f~~~DiI~ 167 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-K-----SKKCPVCGKPFTEEDIIP 167 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-c-----cccccccCCccccCCEEE
Confidence 3467999999999965 33 34999999999999863 2 346999999999877654
No 167
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=95.39 E-value=0.16 Score=49.74 Aligned_cols=87 Identities=13% Similarity=0.167 Sum_probs=70.9
Q ss_pred chhhHHHHHHHHHhhhhHHHHhhhCC-CCChhHHHHHHHHHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHHHHHHH
Q 001733 32 ESEKFTEIGCYFYRATPVIMELQTTK-YTPANALEILQSLSKSISLGKDLVAKCKRGDHSMSDAELRSTMLQLLGVIRRM 110 (1019)
Q Consensus 32 ~~~~~~~l~~~l~~l~~lleel~~~~-~~~~~~~~~l~~L~~~l~~ak~L~~~c~~~s~~~l~~~~~~i~~~f~~v~~~i 110 (1019)
=|..+.+|...++.|.|+++|+.... ..+.....-++.|.+-|++|+.|++.|++-+ -|-......+..+.+...++|
T Consensus 32 fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~k~sk~~-r~n~~kk~~y~~Ki~~le~~l 110 (147)
T PF05659_consen 32 FKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVEKCSKVR-RWNLYKKPRYARKIEELEESL 110 (147)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHhcccc-HHHHHhhHhHHHHHHHHHHHH
Confidence 45578899999999999999999653 2332337778999999999999999998775 455667888999999999999
Q ss_pred Hhhhcc-CCC
Q 001733 111 GECLSL-IPS 119 (1019)
Q Consensus 111 ~~~L~~-iP~ 119 (1019)
.+.++. +|.
T Consensus 111 ~~f~~v~~q~ 120 (147)
T PF05659_consen 111 RRFIQVDLQL 120 (147)
T ss_pred HHHhcchhHH
Confidence 999884 564
No 168
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=95.31 E-value=0.4 Score=51.68 Aligned_cols=229 Identities=17% Similarity=0.132 Sum_probs=157.3
Q ss_pred HHhhcCCHHHHHHHHHHHHhhccCChhHHHHHH-hcCCHHHHHHHhcC--CChhHHHHHHHHHHHhccChhhhhhhhccc
Q 001733 357 KLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIA-ETMDISILIKLLSS--SHRPVRHESLLLLLELSSTRSLCEKIGSIP 433 (1019)
Q Consensus 357 ~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~-~~g~i~~Lv~lL~~--~~~~~r~~Aa~~L~~Ls~~~~~~~~i~~~~ 433 (1019)
+++++-++-.+.-|+.+|.++. -..+.|..+. +...-..++.+++. |+.+.|-++.-+++-|+.++...+.|-...
T Consensus 156 kl~Q~i~~lTrlfav~cl~~l~-~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~ 234 (432)
T COG5231 156 KLSQLIDFLTRLFAVSCLSNLE-FDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMD 234 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4555556778899999999997 6677777665 44456778888876 667899999999999999998887776656
Q ss_pred chHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCC--CchHHHHhcCChHHHHHHhccC---CHHHHHHH-----------
Q 001733 434 GGILVLITFKFNWSIDVFAAEIADQILRNLERNP--DNIKCMAENGLLEPLMHHLNEG---SEEIQMEM----------- 497 (1019)
Q Consensus 434 g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~--~n~~~i~~~G~i~~Lv~lL~~~---~~~~~~~a----------- 497 (1019)
.-|.-|+.+.+. .....+.+-+++++.|++... +....+.-.|-+.+-++.|..+ +++++...
T Consensus 235 dli~dli~iVk~-~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~ 313 (432)
T COG5231 235 DLINDLIAIVKE-RAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNT 313 (432)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhh
Confidence 778888888753 234567788889999998622 4456666667677778877643 33333221
Q ss_pred ----HH--HHHHh-----ccCcc---------ccccccc-c--hHHHHHHHHhcCChH-HHHHHHHHHHHhhcC-CcchH
Q 001733 498 ----AS--YLGEI-----VLGHD---------SKINVPG-R--AASTLIRMVHSGNSL-TRRIAFKALMQISSH-HPSCK 552 (1019)
Q Consensus 498 ----a~--~L~~L-----a~~~~---------~~~~i~~-~--~i~~Lv~lL~~~~~~-~~~~A~~aL~~Ls~~-~~~~~ 552 (1019)
.. .+..| +.+|. |-..+.+ . .+..|.++++..++. ....|+.=+..+... ++.+.
T Consensus 314 k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~ 393 (432)
T COG5231 314 KKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINA 393 (432)
T ss_pred hhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHH
Confidence 11 22222 22221 2233333 2 468888899887666 444566666666644 45688
Q ss_pred HHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHh
Q 001733 553 ILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILE 592 (1019)
Q Consensus 553 ~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~ 592 (1019)
.+.+.|+=+.+++++.+++ ++++-.|..++..+-.
T Consensus 394 vl~Kyg~k~~im~L~nh~d-----~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 394 VLSKYGVKEIIMNLINHDD-----DDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHhhhHHHHHHHhcCCC-----chhhHHHHHHHHHHHh
Confidence 8889999999999987653 5899899888876543
No 169
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=95.31 E-value=1.1 Score=56.22 Aligned_cols=286 Identities=15% Similarity=0.086 Sum_probs=150.3
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHhC---cCCC
Q 001733 615 VYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTLS---PYLG 691 (1019)
Q Consensus 615 i~~Ll~LL~~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~~vr~~A~~~L~~Ls---~~~~ 691 (1019)
+..+.+.+++-.....+..|+..|..++..... +. +-...+|-++.+++++...||..|+.+|..+- +...
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d-e~-----~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~ 497 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDD-EV-----KLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIP 497 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch-HH-----HHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCC
Confidence 344444444435578899999999999876654 22 22357899999999999999999998887665 2222
Q ss_pred hhHHHHhhhcCCChhHhhcccCCCCcChHHHHHHHHHHhccCCCC---hhhHHHHHhCCChHHHHHHHHhhhccCCCccc
Q 001733 692 HTLVERLCKTRGQPENLIQCPTETIHITEKQAVSAKFLAKLPHQN---LTLNLALSARNVVPTILQTINLIQRSGTRTSR 768 (1019)
Q Consensus 692 ~~~~~~l~~~~g~i~~LV~lL~~~~~~~~~~~~A~~~L~nL~~~~---~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~ 768 (1019)
..-...+. +..+|.|-.++.+++ ..-++.+=+..|+.|+..- -+.++.+-.+|.+....+
T Consensus 498 ~~daniF~--eYlfP~L~~l~~d~~-~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~ns-------------- 560 (1431)
T KOG1240|consen 498 PSDANIFP--EYLFPHLNHLLNDSS-AQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNS-------------- 560 (1431)
T ss_pred cccchhhH--hhhhhhhHhhhccCc-cceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCccc--------------
Confidence 22233344 357788888887754 2345655555555554310 111122222221111000
Q ss_pred hhhhHHHHHHHHHHHHhcCCCchhHHHHHHhCCchHHHHHHHhcCCcHHHHHHHHHHHhhhcccC---Cc----CCCC--
Q 001733 769 YASAYLEGLIGILVRFTTTLYEPQILFLARTHNFTSVFTELLMKTSCDEVQKLAAIGLENLSSES---IN----LSKP-- 839 (1019)
Q Consensus 769 ~~~~~~e~a~~aL~~lt~~~~~~~~~~~~~~~g~i~~Lv~LL~~~~~~~vk~~AA~aL~nLs~~~---~~----l~~~-- 839 (1019)
....+ ..++.+.++.. +++-..++.||.+ +.+-||+.--..|+-|..-= .. |+..
T Consensus 561 --et~~~-----------~~~~~~~~~L~--~~V~~~v~sLlsd-~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiT 624 (1431)
T KOG1240|consen 561 --ETAPE-----------QNYNTELQALH--HTVEQMVSSLLSD-SPPIVKRALLESIIPLCVFFGKEKSNDVILSHLIT 624 (1431)
T ss_pred --ccccc-----------cccchHHHHHH--HHHHHHHHHHHcC-CchHHHHHHHHHHHHHHHHhhhcccccchHHHHHH
Confidence 00000 00011111111 2333445555555 45566655555544432110 00 0000
Q ss_pred -CCcCCccccc-ccccCcccccCCCCCCCCCCCcccCCccccCccchhhhccchHHHHhhhccCchhhHHHHHHHHHhhh
Q 001733 840 -PQIKSKKFMK-FFSLPKSLSVGSSKKKSVSLCPVHRGACSSQNTFCLIDAKAVDRLLACLYHENVEVVEAALSALCTLL 917 (1019)
Q Consensus 840 -~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~c~v~~~~cs~~~~~~Lv~~gai~~Lv~lL~~~d~~v~~~Al~AL~~L~ 917 (1019)
...++ +.++ -|.. -..|+|.--.. .-++.+.+|.|.|-|.+..+.|...|+++|..|.
T Consensus 625 fLNDkD-w~LR~aFfd------------------sI~gvsi~VG~-rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Li 684 (1431)
T KOG1240|consen 625 FLNDKD-WRLRGAFFD------------------SIVGVSIFVGW-RSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILI 684 (1431)
T ss_pred HhcCcc-HHHHHHHHh------------------hccceEEEEee-eeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHH
Confidence 00000 0000 0000 01111110000 0136788999999999999999999999999999
Q ss_pred ccCcchhhHHHHHHhccchHHHHHHHhhcChhhHHHHHHHHHHHHHhh
Q 001733 918 DEKVDVDKSVSMLSEVNAIQHVLNVVKEHRQEVLQQKSFWMIERFLVK 965 (1019)
Q Consensus 918 ~d~~~~~~~~~~i~~~~~i~~l~~lL~~~~~~~~~~~A~~aL~~i~~~ 965 (1019)
..+--.+..+.-|. +-..-+|. |+|.=+++.++.+|..+.+.
T Consensus 685 k~~ll~K~~v~~i~-----~~v~PlL~-hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 685 KLGLLRKPAVKDIL-----QDVLPLLC-HPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred HhcccchHHHHHHH-----Hhhhhhee-CchHHHHHHHHHHHHHHHhh
Confidence 76542222222222 22334566 89999999999998766554
No 170
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=95.24 E-value=8.4 Score=45.12 Aligned_cols=354 Identities=15% Similarity=0.129 Sum_probs=187.6
Q ss_pred hHHHHHHhhcCCH---HHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHhcCC-ChhHHHHHHHHHHHhccChhhhh
Q 001733 352 LPLLTKLLEYKDR---NVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSS-HRPVRHESLLLLLELSSTRSLCE 427 (1019)
Q Consensus 352 i~~Lv~lL~s~~~---~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL~~~-~~~~r~~Aa~~L~~Ls~~~~~~~ 427 (1019)
+|.|...|.+.+. ...+..+.+|..++ .+...-+.+.- ..+..+-.....+ +.+.-...+.+|.++........
T Consensus 1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls-~~~~i~~~~~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~ 78 (415)
T PF12460_consen 1 LPALLALLPDSDSSTDSNYERILEALAALS-TSPQILETLSI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDK 78 (415)
T ss_pred CchHHhhCCCCCCcchhHHHHHHHHHHHHH-CChhHHHHHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccccc
Confidence 4677788876544 67888999999998 44443333321 3333333333322 34455566666666644321111
Q ss_pred ---hhhcc--cchHHHHHHhhhcC---C--CChHHHHHHHHHHHHhcC--CCCchHHHHhcCChHHHHHHhc--------
Q 001733 428 ---KIGSI--PGGILVLITFKFNW---S--IDVFAAEIADQILRNLER--NPDNIKCMAENGLLEPLMHHLN-------- 487 (1019)
Q Consensus 428 ---~i~~~--~g~I~~LV~lL~~~---~--~~~~~~~~A~~aL~nLs~--~~~n~~~i~~~G~i~~Lv~lL~-------- 487 (1019)
..... ...++.+.++.-.. . .+..+...+...+..... ..+....++ ..++.+..
T Consensus 79 ~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~-----~~~~~lf~~~~~~~~~ 153 (415)
T PF12460_consen 79 QFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEIL-----DELYSLFLSPKSFSPF 153 (415)
T ss_pred ccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHH-----HHHHHHHccccccCCC
Confidence 11111 22677777775311 1 123444444444444432 222223332 23333322
Q ss_pred --cCC--HHHHHHHHHHHHH-hcc-CcccccccccchHHHHHHHHhcC-ChHHHHHHHHHHHHhhcCCcchHHHHHcCcH
Q 001733 488 --EGS--EEIQMEMASYLGE-IVL-GHDSKINVPGRAASTLIRMVHSG-NSLTRRIAFKALMQISSHHPSCKILVEAGIV 560 (1019)
Q Consensus 488 --~~~--~~~~~~aa~~L~~-La~-~~~~~~~i~~~~i~~Lv~lL~~~-~~~~~~~A~~aL~~Ls~~~~~~~~l~~~G~v 560 (1019)
..+ ...+......+.. ++. .++....-....+..++.+..+. ++..+..++..|..|...-.....+ ...+
T Consensus 154 ~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l--~~~l 231 (415)
T PF12460_consen 154 QPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDL--DEFL 231 (415)
T ss_pred CccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhH--HHHH
Confidence 111 0112222222222 222 22222111113567777776554 4778888888888887553221110 1122
Q ss_pred HHHHHHHhhhccCCCChhHHHH----HHHHHHHHHhcCCCcccccccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHH
Q 001733 561 QVMAEEMFIRIIHNEPMNSKEE----AAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIR 636 (1019)
Q Consensus 561 ~~Lv~lL~~~~~~~~~~~~~~~----A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~ 636 (1019)
..+..-+... .+...+.. ..|+...+..+... .....+..|+.+|.+ +.+...+++
T Consensus 232 ~~~~~~~~~~----~~~~~~~~~~~~~~Wi~KaLv~R~~~-------------~~~~~~~~L~~lL~~---~~~g~~aA~ 291 (415)
T PF12460_consen 232 DSLLQSISSS----EDSELRPQALEILIWITKALVMRGHP-------------LATELLDKLLELLSS---PELGQQAAK 291 (415)
T ss_pred HHHHhhhccc----CCcchhHHHHHHHHHHHHHHHHcCCc-------------hHHHHHHHHHHHhCC---hhhHHHHHH
Confidence 2222222111 11233334 44444444444321 135678889998854 888899999
Q ss_pred HHHHHhCCCCc-----hHHHHHHHHHcCCh----HHHHHhhcCCCHHHHHHHHHHHHHhCcCCChhHHHHhhhcCCChhH
Q 001733 637 ILQCLTKSPKP-----MATIVSVIKETEAS----YSLLEVINNPHDELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPEN 707 (1019)
Q Consensus 637 aL~~La~~~~~-----~~~i~~~i~~~g~i----~~Lv~LL~~~~~~vr~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~ 707 (1019)
++.-+....+. ....++.+.++... |.|++..+..+.+.+.....+|.++-.+.+..+...-- ...+|.
T Consensus 292 ~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l--~~LlPL 369 (415)
T PF12460_consen 292 AFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPEL--PTLLPL 369 (415)
T ss_pred HHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHH--HHHHHH
Confidence 99988876221 11223444444444 44555555666678888899999999887776554322 357889
Q ss_pred hhcccCCCCcChHHHHHHHHHHhccCCCChh
Q 001733 708 LIQCPTETIHITEKQAVSAKFLAKLPHQNLT 738 (1019)
Q Consensus 708 LV~lL~~~~~~~~~~~~A~~~L~nL~~~~~~ 738 (1019)
|++-|..++ .+++..++.+|..+...+++
T Consensus 370 LlqsL~~~~--~~v~~s~L~tL~~~l~~~~~ 398 (415)
T PF12460_consen 370 LLQSLSLPD--ADVLLSSLETLKMILEEAPE 398 (415)
T ss_pred HHHHhCCCC--HHHHHHHHHHHHHHHHcCHH
Confidence 999997665 57899999999888775533
No 171
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.20 E-value=0.014 Score=59.66 Aligned_cols=53 Identities=26% Similarity=0.537 Sum_probs=45.4
Q ss_pred CccccccCcccCCC--c--eecCCCccccHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCcc
Q 001733 232 ETFYCPLTKEIMDD--P--VTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNT 289 (1019)
Q Consensus 232 ~~~~Cpi~~~~m~d--P--v~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~~~~l~p 289 (1019)
..|.||+|.+.+.+ | |+-+|||.|+..|.|+.+.. ...||+|+.++...++++
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~-----D~v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK-----DMVDPVTDKPLKDRDIIG 276 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc-----cccccCCCCcCcccceEe
Confidence 67999999999998 3 44499999999999998875 568999999999877665
No 172
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=0.015 Score=60.76 Aligned_cols=49 Identities=22% Similarity=0.306 Sum_probs=41.0
Q ss_pred CccccccCcccCCCceec-CCCccccHHHHHHHHhhhccCCCCCCCCCCCCCC
Q 001733 232 ETFYCPLTKEIMDDPVTI-ESGVTYERNAITAWFEKFETSGDIFCPTTGKKLM 283 (1019)
Q Consensus 232 ~~~~Cpi~~~~m~dPv~~-~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~ 283 (1019)
.+-.||+|++--.-|.++ +|||.||--||..-+.. ....+||.|+.+-.
T Consensus 238 ~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~---~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 238 SDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLW---DASFTCPLCGENVE 287 (298)
T ss_pred CCceeeccCCCCCCCeeeccccceeehhhhhhhhcc---hhhcccCccCCCCc
Confidence 567899999999999988 59999999999986653 13579999998643
No 173
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=95.09 E-value=0.15 Score=58.42 Aligned_cols=178 Identities=11% Similarity=0.065 Sum_probs=119.8
Q ss_pred HHHHHHHhccChhh-hhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCc-hHHHHhcCChHHHHHHhccC
Q 001733 412 SLLLLLELSSTRSL-CEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDN-IKCMAENGLLEPLMHHLNEG 489 (1019)
Q Consensus 412 Aa~~L~~Ls~~~~~-~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n-~~~i~~~G~i~~Lv~lL~~~ 489 (1019)
++.+|.++|.+-.. |.-+ .......+|+++|++ .+..+..-+...+.|+...-.| +..+.+.|.|..|+.++.+.
T Consensus 409 ~~l~LkS~SrSV~~LRTgL-~d~~I~elLi~~Ls~--Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK 485 (743)
T COG5369 409 IVLFLKSMSRSVTFLRTGL-LDYPIVELLIDALSN--PEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK 485 (743)
T ss_pred HHHHHHHhhHHHHHHHhhc-cccchHHHHHHHhcC--ccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc
Confidence 34455555554433 3333 347788999999953 2333344566778888754455 57788999999999999988
Q ss_pred CHHHHHHHHHHHHHhccCcccccc--c-ccchHHHHHHHHhcCChHHHHHHHHHHHHhhcCCc----chHHHHHcCcHH-
Q 001733 490 SEEIQMEMASYLGEIVLGHDSKIN--V-PGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHP----SCKILVEAGIVQ- 561 (1019)
Q Consensus 490 ~~~~~~~aa~~L~~La~~~~~~~~--i-~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~----~~~~l~~~G~v~- 561 (1019)
+..+|.+..|+|..+..+.+.-.. . +.-|+..++.+..++.-.++++++.+|.|+..+.. .++..++.--..
T Consensus 486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~y 565 (743)
T COG5369 486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRY 565 (743)
T ss_pred hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHH
Confidence 899999999999999886554432 2 34588999999998889999999999999976432 233333333222
Q ss_pred ---HHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCc
Q 001733 562 ---VMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEH 597 (1019)
Q Consensus 562 ---~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~ 597 (1019)
.|++-+... .|..+.+. +-+|.+++.+....
T Consensus 566 lfk~l~~k~e~~----np~~i~~~-~yilv~~aa~d~~l 599 (743)
T COG5369 566 LFKRLIDKYEEN----NPMEILEG-CYILVRNAACDDTL 599 (743)
T ss_pred HHHHHHHHHHhc----Cchhhhhh-HHHHHHHHhccchH
Confidence 334433332 24555555 56677777765544
No 174
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=0.02 Score=61.93 Aligned_cols=46 Identities=17% Similarity=0.455 Sum_probs=39.6
Q ss_pred CccccccCcccCCCc-------------eecCCCccccHHHHHHHHhhhccCCCCCCCCCCCCC
Q 001733 232 ETFYCPLTKEIMDDP-------------VTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKL 282 (1019)
Q Consensus 232 ~~~~Cpi~~~~m~dP-------------v~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l 282 (1019)
+|-+|-||.+-|-+| ==+||||.+--+|+..|+++ ..+||+|+.++
T Consensus 286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-----qQTCPICr~p~ 344 (491)
T COG5243 286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-----QQTCPICRRPV 344 (491)
T ss_pred CCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-----ccCCCcccCcc
Confidence 578899999886543 57899999999999999998 46999999985
No 175
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=94.88 E-value=2.6 Score=44.76 Aligned_cols=204 Identities=13% Similarity=0.124 Sum_probs=118.8
Q ss_pred hHHHHHHhccCCHHHHHHHHHHHHHhccCcccccccccchHHHHHHHHhcCC--hHHHHHHHHHHHHhhcCCcchHHHHH
Q 001733 479 LEPLMHHLNEGSEEIQMEMASYLGEIVLGHDSKINVPGRAASTLIRMVHSGN--SLTRRIAFKALMQISSHHPSCKILVE 556 (1019)
Q Consensus 479 i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~i~~~~i~~Lv~lL~~~~--~~~~~~A~~aL~~Ls~~~~~~~~l~~ 556 (1019)
+..+.+...+++...+.+.+-+|..+.. +.++|.|+..|...+ |-++..|..+|.++. ++.
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ~~~---------~~Av~~l~~vl~desq~pmvRhEAaealga~~-~~~------- 100 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQMQD---------EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-DPE------- 100 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhhhcc---------chhhHHHHHHhcccccchHHHHHHHHHHHhhc-chh-------
Confidence 6666777776777777778878775433 357999999887654 668888999998887 333
Q ss_pred cCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCC-c-----ccccccccCcccchhhhHHHHHHHHcCCCCHHH
Q 001733 557 AGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLE-H-----HSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDEL 630 (1019)
Q Consensus 557 ~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~-~-----~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v 630 (1019)
.++.|-++... ....+++.+..++..+-..... . .-..+||... ...+-|..|-..|...+-+..
T Consensus 101 --~~~~l~k~~~d-----p~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p--~~~ssv~~lr~~lld~t~~l~ 171 (289)
T KOG0567|consen 101 --SLEILTKYIKD-----PCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPP--ANLSSVHELRAELLDETKPLF 171 (289)
T ss_pred --hHHHHHHHhcC-----CccccchHHHHHHHHHHHhhccccccccCccccCCCCCc--cccccHHHHHHHHHhcchhHH
Confidence 24444444321 1235666666666655322110 0 1111343332 223345555554443244444
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHhCcCCChhHHHHhhhcCCChhHhhc
Q 001733 631 NVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQ 710 (1019)
Q Consensus 631 ~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~~vr~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~LV~ 710 (1019)
... ++++.|..... + ..+..|++=+..++.-.|..++.+|..|-. ...|+.|.+
T Consensus 172 ~Ry--~amF~LRn~g~--E---------eaI~al~~~l~~~SalfrhEvAfVfGQl~s-------------~~ai~~L~k 225 (289)
T KOG0567|consen 172 ERY--RAMFYLRNIGT--E---------EAINALIDGLADDSALFRHEVAFVFGQLQS-------------PAAIPSLIK 225 (289)
T ss_pred HHH--hhhhHhhccCc--H---------HHHHHHHHhcccchHHHHHHHHHHHhhccc-------------hhhhHHHHH
Confidence 443 44444433221 1 234456666666777888888888876652 245777777
Q ss_pred ccCCCCcChHHHHHHHHHHhccCC
Q 001733 711 CPTETIHITEKQAVSAKFLAKLPH 734 (1019)
Q Consensus 711 lL~~~~~~~~~~~~A~~~L~nL~~ 734 (1019)
.|.......-+|..|+-+|+.+..
T Consensus 226 ~L~d~~E~pMVRhEaAeALGaIa~ 249 (289)
T KOG0567|consen 226 VLLDETEHPMVRHEAAEALGAIAD 249 (289)
T ss_pred HHHhhhcchHHHHHHHHHHHhhcC
Confidence 666554345678888888888864
No 176
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.80 E-value=0.012 Score=62.19 Aligned_cols=44 Identities=16% Similarity=0.292 Sum_probs=39.2
Q ss_pred cccccCcccCCCceecCCCccccHHHHHHHHhhhccCCCCCCCCCCCCC
Q 001733 234 FYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKL 282 (1019)
Q Consensus 234 ~~Cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l 282 (1019)
|-|-||++.|.+||+..|||+||..|-.+.+.. ...|++|++..
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk-----~~~c~vC~~~t 285 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK-----GEKCYVCSQQT 285 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhcccccc-----CCcceeccccc
Confidence 899999999999999999999999998777776 35799998864
No 177
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=94.67 E-value=0.043 Score=43.96 Aligned_cols=55 Identities=18% Similarity=0.146 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHHhcCCCCchHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHh
Q 001733 450 VFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEI 504 (1019)
Q Consensus 450 ~~~~~~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~L 504 (1019)
+.++..|+.+|.+++........-....+++.|+.+|.++++.++..++++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 3578899999999886665555445567899999999988899999999999865
No 178
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.60 E-value=0.013 Score=65.09 Aligned_cols=48 Identities=25% Similarity=0.447 Sum_probs=40.8
Q ss_pred CCCCccccccCcccCCCce----ecCCCccccHHHHHHHHhhhccCCCCCCCCCCCCCC
Q 001733 229 PLYETFYCPLTKEIMDDPV----TIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLM 283 (1019)
Q Consensus 229 ~~~~~~~Cpi~~~~m~dPv----~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~ 283 (1019)
++.+-.+||+|+|-|-+-+ ++.|-|+|--.|+.+||.. +||+||.-.+
T Consensus 171 ~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~-------scpvcR~~q~ 222 (493)
T KOG0804|consen 171 GLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS-------SCPVCRYCQS 222 (493)
T ss_pred CcccCCCcchhHhhcCccccceeeeecccccchHHHhhcccC-------cChhhhhhcC
Confidence 3567789999999999865 5699999999999999987 6999986544
No 179
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.44 E-value=0.096 Score=48.90 Aligned_cols=74 Identities=9% Similarity=0.295 Sum_probs=63.0
Q ss_pred ccchHHHHhhh-ccCchhhHHHHHHHHHhhhccCcchhhHHHHHHhccchHHHHHHHhhcChhhHHHHHHHHHHHHHhh
Q 001733 888 AKAVDRLLACL-YHENVEVVEAALSALCTLLDEKVDVDKSVSMLSEVNAIQHVLNVVKEHRQEVLQQKSFWMIERFLVK 965 (1019)
Q Consensus 888 ~gai~~Lv~lL-~~~d~~v~~~Al~AL~~L~~d~~~~~~~~~~i~~~~~i~~l~~lL~~~~~~~~~~~A~~aL~~i~~~ 965 (1019)
-..+..|+++| .+.|+.+...|+.=|..++..- +.|...+.+.|+-..+++++. |++++++..|+-+++++...
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~---p~gr~ii~~lg~K~~vM~Lm~-h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHY---PNGRNIIEKLGAKERVMELMN-HEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH----GGGHHHHHHHSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHC---hhHHHHHHhcChHHHHHHHhc-CCCHHHHHHHHHHHHHHHHh
Confidence 34688999999 5678999999999999999763 468888999999999999998 99999999999999998754
No 180
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=94.44 E-value=0.1 Score=41.81 Aligned_cols=55 Identities=27% Similarity=0.128 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHhcCCChhHHHHHHHHHHHh
Q 001733 364 RNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSSHRPVRHESLLLLLEL 419 (1019)
Q Consensus 364 ~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~r~~Aa~~L~~L 419 (1019)
+.+|..|+.+|.+++...++.-.. .....++.|+.+|++++..+|.+|+.+|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 468999999999988444443222 4467899999999998899999999999865
No 181
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=94.36 E-value=0.99 Score=46.08 Aligned_cols=92 Identities=20% Similarity=0.207 Sum_probs=71.1
Q ss_pred CHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHhcCCChhHHHHHHHHHHHhccChhhhhhhhcccchH-HHHHH
Q 001733 363 DRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSSHRPVRHESLLLLLELSSTRSLCEKIGSIPGGI-LVLIT 441 (1019)
Q Consensus 363 ~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~~~~~~~i~~~~g~I-~~LV~ 441 (1019)
|+.+|.+++.+|..|+...+. ++ ...+|.+...|+++++.+|..|+.+|.+|...+-.+. .|-+ ..++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~----~v-e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~-----k~~l~~~~l~ 70 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN----LV-EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV-----KGQLFSRILK 70 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH----HH-HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee-----hhhhhHHHHH
Confidence 578899999999999854432 22 2458899999999999999999999999977653333 3444 66666
Q ss_pred hhhcCCCChHHHHHHHHHHHHhcCC
Q 001733 442 FKFNWSIDVFAAEIADQILRNLERN 466 (1019)
Q Consensus 442 lL~~~~~~~~~~~~A~~aL~nLs~~ 466 (1019)
++ ..++++++..|...+..+...
T Consensus 71 ~l--~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 71 LL--VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HH--cCCCHHHHHHHHHHHHHHHHh
Confidence 67 356889999999999988865
No 182
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=94.34 E-value=1.6 Score=45.63 Aligned_cols=187 Identities=14% Similarity=0.171 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCC-----CHHHHHHHHHHHHHhCcCCChhHHHHhhhcCCC
Q 001733 630 LNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNP-----HDELAVAAIKLLTTLSPYLGHTLVERLCKTRGQ 704 (1019)
Q Consensus 630 v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~-----~~~vr~~A~~~L~~Ls~~~~~~~~~~l~~~~g~ 704 (1019)
--.+++..|..++++++. +..+.++..---|-++|... .+.+|..++..+..|...+++++...+..+ +.
T Consensus 95 RVcnaL~LlQcvASHpdT----r~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~T-eI 169 (293)
T KOG3036|consen 95 RVCNALALLQCVASHPDT----RRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTT-EI 169 (293)
T ss_pred hHHHHHHHHHHHhcCcch----HHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHh-hh
Confidence 345677777888888865 56666667666777888643 367999999999999988888877777765 89
Q ss_pred hhHhhcccCCCCcChHHHHHHHHHHhccCCCChhhHHHHHh-CCChHHHHHHHHhhhccCCCccchhhhHHHHHHHHHHH
Q 001733 705 PENLIQCPTETIHITEKQAVSAKFLAKLPHQNLTLNLALSA-RNVVPTILQTINLIQRSGTRTSRYASAYLEGLIGILVR 783 (1019)
Q Consensus 705 i~~LV~lL~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~l~~-~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~ 783 (1019)
+|..++.+..++ +.-+..|..++..+-.+|..+. .+.+ ..-+-.+...|..+-..-. +-....++..++....|
T Consensus 170 VPlCLrime~GS--elSKtvA~fIlqKIlldD~GL~-YiCqt~eRF~av~~~L~kmv~~l~--~~ps~RllKhviRcYlr 244 (293)
T KOG3036|consen 170 VPLCLRIMESGS--ELSKTVATFILQKILLDDVGLY-YICQTAERFSAVALVLGKMVFQLV--SMPSPRLLKHVIRCYLR 244 (293)
T ss_pred HHHHHHHHhccc--HHHHHHHHHHHHHHhhccccHH-HHHHhHHHHHHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHH
Confidence 999999998876 5778889999998877565442 2221 1111222222221100000 00123456677777788
Q ss_pred HhcCCCchhHHHHHHhC--Cch--HHHHHHHhcCCcHHHHHHHHHHHhhhcc
Q 001733 784 FTTTLYEPQILFLARTH--NFT--SVFTELLMKTSCDEVQKLAAIGLENLSS 831 (1019)
Q Consensus 784 lt~~~~~~~~~~~~~~~--g~i--~~Lv~LL~~~~~~~vk~~AA~aL~nLs~ 831 (1019)
++. ||..+.++... +.+ ..+..+|++ ++..|+.-+.-+.|+..
T Consensus 245 Lsd---nprar~aL~~clPd~Lrd~tfs~~l~~--D~~~k~~l~~ll~~l~~ 291 (293)
T KOG3036|consen 245 LSD---NPRARAALRSCLPDQLRDGTFSLLLKD--DPETKQWLQQLLKNLCT 291 (293)
T ss_pred hcC---CHHHHHHHHhhCcchhccchHHHHHhc--ChhHHHHHHHHHHHhcc
Confidence 885 88888877631 111 145555665 67788888877777754
No 183
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=94.31 E-value=0.018 Score=63.16 Aligned_cols=33 Identities=12% Similarity=0.356 Sum_probs=29.8
Q ss_pred CccccccCcccCCCceecCCCccccHHHHHHHH
Q 001733 232 ETFYCPLTKEIMDDPVTIESGVTYERNAITAWF 264 (1019)
Q Consensus 232 ~~~~Cpi~~~~m~dPv~~~~g~t~~r~~I~~~~ 264 (1019)
+++.||||+..|+||+|++|||+.||.|-....
T Consensus 3 eelkc~vc~~f~~epiil~c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 3 EELKCPVCGSFYREPIILPCSHNLCQACARNIL 35 (699)
T ss_pred ccccCceehhhccCceEeecccHHHHHHHHhhc
Confidence 689999999999999999999999999976443
No 184
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=94.28 E-value=1.7 Score=53.36 Aligned_cols=136 Identities=17% Similarity=0.137 Sum_probs=60.2
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHhcCCChhHHHHHHHHHHHhccChhhhhhhhcc
Q 001733 353 PLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSSHRPVRHESLLLLLELSSTRSLCEKIGSI 432 (1019)
Q Consensus 353 ~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~~~~~~~i~~~ 432 (1019)
|-+++...+.|.++++-.---|...++.+++- .. =++..+.+=|++.++.+|..|..+|..|=. .+-+
T Consensus 58 ~dViK~~~trd~ElKrL~ylYl~~yak~~P~~-~l----LavNti~kDl~d~N~~iR~~AlR~ls~l~~----~el~--- 125 (757)
T COG5096 58 PDVIKNVATRDVELKRLLYLYLERYAKLKPEL-AL----LAVNTIQKDLQDPNEEIRGFALRTLSLLRV----KELL--- 125 (757)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhccCHHH-HH----HHHHHHHhhccCCCHHHHHHHHHHHHhcCh----HHHH---
Confidence 33444444445555444444444444333311 11 124444555555555555555555544311 1111
Q ss_pred cchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHh
Q 001733 433 PGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEI 504 (1019)
Q Consensus 433 ~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~L 504 (1019)
...++++.+++ ..+++.+++.|+-+++++=.. .+....+.|.+..+..++.+.+|.+..+|..+|..+
T Consensus 126 ~~~~~~ik~~l--~d~~ayVRk~Aalav~kly~l--d~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i 193 (757)
T COG5096 126 GNIIDPIKKLL--TDPHAYVRKTAALAVAKLYRL--DKDLYHELGLIDILKELVADSDPIVIANALASLAEI 193 (757)
T ss_pred HHHHHHHHHHc--cCCcHHHHHHHHHHHHHHHhc--CHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHh
Confidence 22344444544 234445555555555554321 122233445555555555555555555555555544
No 185
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=94.26 E-value=2.6 Score=47.38 Aligned_cols=216 Identities=13% Similarity=0.134 Sum_probs=143.3
Q ss_pred HHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC-ccccc-cccc---chHHHHHHHHhc--CChHHHHHHHHHHHHh
Q 001733 472 CMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLG-HDSKI-NVPG---RAASTLIRMVHS--GNSLTRRIAFKALMQI 544 (1019)
Q Consensus 472 ~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~-~~~~~-~i~~---~~i~~Lv~lL~~--~~~~~~~~A~~aL~~L 544 (1019)
.+.+.|.+..|+..|..-+-+.+..++.+..++-.. .+++. -..+ .-.|-++..|-. +++++.-.+-..|+.+
T Consensus 71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec 150 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLREC 150 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHH
Confidence 566779999999999999999999999999998763 33332 1111 111334443333 3677777888888888
Q ss_pred hcCCcchHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCcccccccccCcccc--hhhhHHHHHHHH
Q 001733 545 SSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMV--SDYVVYNIIYML 622 (1019)
Q Consensus 545 s~~~~~~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~--~~~~i~~Ll~LL 622 (1019)
..+..-.+.+.....+..+.+.+..+. -++...|..++..+-..... ++. ..+. -..+...+-.||
T Consensus 151 ~k~e~l~~~iL~~~~f~~ff~~~~~~~-----Fdiasdaf~t~~~llt~hk~---~~a----~fl~~n~d~ff~~~~~Ll 218 (335)
T PF08569_consen 151 IKHESLAKIILYSECFWKFFKYVQLPN-----FDIASDAFSTFKELLTRHKK---LVA----EFLSNNYDRFFQKYNKLL 218 (335)
T ss_dssp TTSHHHHHHHHTSGGGGGHHHHTTSSS-----HHHHHHHHHHHHHHHHSSHH---HHH----HHHHHTHHHHHHHHHHHC
T ss_pred HhhHHHHHHHhCcHHHHHHHHHhcCCc-----cHhHHHHHHHHHHHHhccHH---HHH----HHHHHHHHHHHHHHHHHc
Confidence 888766777777777777776655332 45666666666665443210 000 0111 134566778888
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHhC--cCCChhHHHHhhh
Q 001733 623 KNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTLS--PYLGHTLVERLCK 700 (1019)
Q Consensus 623 ~~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~~vr~~A~~~L~~Ls--~~~~~~~~~~l~~ 700 (1019)
.+ ++-.++.++++.|..+-....+..-+.+.|.+..-+..+..+|++++..+|..|-..+..+. ++.+..+...+.+
T Consensus 219 ~s-~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~ 297 (335)
T PF08569_consen 219 ES-SNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIK 297 (335)
T ss_dssp T--SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHH
T ss_pred cC-CCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHH
Confidence 88 99999999999999998877764444556667777888889999999999999999888777 4445566665554
No 186
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=94.24 E-value=14 Score=43.16 Aligned_cols=365 Identities=17% Similarity=0.157 Sum_probs=183.6
Q ss_pred HHHHHHHhcCCh---HHHHHHHHHHHHhhcCCcchHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCC
Q 001733 520 STLIRMVHSGNS---LTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLE 596 (1019)
Q Consensus 520 ~~Lv~lL~~~~~---~~~~~A~~aL~~Ls~~~~~~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~ 596 (1019)
|.|+..|.+..+ ...+..+.+|..+|...+--..++- +.+..|-..+... ........++.+|..+......
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~i~~~~~~-~ll~kl~~~~~~~----~~~~~~~~il~tl~~~~~~~~~ 76 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALSTSPQILETLSI-RLLNKLSIVCQSE----SSSDYCHAILSTLQSLLEKKQE 76 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHCChhHHHHHHH-HHHHHHHHHhcCC----CChHHHHHHHHHHHHHHHhccc
Confidence 566777766443 5678888899999887654333332 2333332222211 1124445555556666554433
Q ss_pred cccccccccCcccchhhhHHHHHHHHcCC----CC--HHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhc-
Q 001733 597 HHSLQVNSHGHTMVSDYVVYNIIYMLKNS----TP--DELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVIN- 669 (1019)
Q Consensus 597 ~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~----~~--~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~- 669 (1019)
... +..........+++.++.+.... .+ +.+-..+..++..+..+-+. +...+ .+..+..+..
T Consensus 77 ~~~---~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~-~~q~~------~~~~~~~lf~~ 146 (415)
T PF12460_consen 77 DKQ---FEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSP-EKQQE------ILDELYSLFLS 146 (415)
T ss_pred ccc---cchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCH-HHHHH------HHHHHHHHHcc
Confidence 220 00112223344777777776541 11 34444455555544443332 11111 1223333322
Q ss_pred ---------C------CCHHHHHHHHHHHHHhCcCCChhHHHHhhhcCCChhHhhcccCCCCcChHHHHHHHHHHhccCC
Q 001733 670 ---------N------PHDELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCPTETIHITEKQAVSAKFLAKLPH 734 (1019)
Q Consensus 670 ---------~------~~~~vr~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~LV~lL~~~~~~~~~~~~A~~~L~nL~~ 734 (1019)
. .......-...+++.+-+...-. .. ...+..++.+..... +...+..++.+++-+.-
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~---~~---~~ll~~l~~~~~~~~-~~~~~~~~~~~la~LvN 219 (415)
T PF12460_consen 147 PKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLP---DL---EELLQSLLNLALSSE-DEFSRLAALQLLASLVN 219 (415)
T ss_pred ccccCCCCccccccccccccHHHHHHHHHHcCCcccCcc---CH---HHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHc
Confidence 1 11122223345555555322211 01 124566777766665 45777777777776643
Q ss_pred C--ChhhHHHHHhCCChHHHHHHHHhhhccCCCccchhhhHHHHHHHHHHH-HhcCCCchhHHHHHHhCCchHHHHHHHh
Q 001733 735 Q--NLTLNLALSARNVVPTILQTINLIQRSGTRTSRYASAYLEGLIGILVR-FTTTLYEPQILFLARTHNFTSVFTELLM 811 (1019)
Q Consensus 735 ~--~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~-lt~~~~~~~~~~~~~~~g~i~~Lv~LL~ 811 (1019)
. +.+ .+..++..+...- .............+..+|+.-. +.++ +|...+ .+..|+++|.
T Consensus 220 K~~~~~---------~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~Wi~KaLv~R~--~~~~~~------~~~~L~~lL~ 281 (415)
T PF12460_consen 220 KWPDDD---------DLDEFLDSLLQSI-SSSEDSELRPQALEILIWITKALVMRG--HPLATE------LLDKLLELLS 281 (415)
T ss_pred CCCChh---------hHHHHHHHHHhhh-cccCCcchhHHHHHHHHHHHHHHHHcC--CchHHH------HHHHHHHHhC
Confidence 1 111 1222222221100 0000111122223333332222 2222 444433 3445777776
Q ss_pred cCCcHHHHHHHHHHHhhhcccCCc-CCCCCCcCCcccccccccCcccccCCCCCCCCCCCcccCCccccCccchhhhccc
Q 001733 812 KTSCDEVQKLAAIGLENLSSESIN-LSKPPQIKSKKFMKFFSLPKSLSVGSSKKKSVSLCPVHRGACSSQNTFCLIDAKA 890 (1019)
Q Consensus 812 ~~~~~~vk~~AA~aL~nLs~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~v~~~~cs~~~~~~Lv~~ga 890 (1019)
+ +.+...||.++.-|...... +.+.- ....+.+ . ++.|. .-.
T Consensus 282 ~---~~~g~~aA~~f~il~~d~~~~l~~~~----~a~vklL---------------------y------kQR~F---~~~ 324 (415)
T PF12460_consen 282 S---PELGQQAAKAFGILLSDSDDVLNKEN----HANVKLL---------------------Y------KQRFF---TQV 324 (415)
T ss_pred C---hhhHHHHHHHHhhHhcCcHHhcCccc----cchhhhH---------------------H------hHHHH---HHH
Confidence 6 67888999999888765321 11100 0000000 0 12221 346
Q ss_pred hHHHHhhhccCchhhHHHHHHHHHhhhccCcchhhHHHHHHhccchHHHHHHHhhcChhhHHHHHHHHHHHHHhh
Q 001733 891 VDRLLACLYHENVEVVEAALSALCTLLDEKVDVDKSVSMLSEVNAIQHVLNVVKEHRQEVLQQKSFWMIERFLVK 965 (1019)
Q Consensus 891 i~~Lv~lL~~~d~~v~~~Al~AL~~L~~d~~~~~~~~~~i~~~~~i~~l~~lL~~~~~~~~~~~A~~aL~~i~~~ 965 (1019)
+++|++-.+..+...+..-+.||..++..- ++.+-.-+-..-+|.+++.|. .++.+++..++..|..++..
T Consensus 325 ~p~L~~~~~~~~~~~k~~yL~ALs~ll~~v---P~~vl~~~l~~LlPLLlqsL~-~~~~~v~~s~L~tL~~~l~~ 395 (415)
T PF12460_consen 325 LPKLLEGFKEADDEIKSNYLTALSHLLKNV---PKSVLLPELPTLLPLLLQSLS-LPDADVLLSSLETLKMILEE 395 (415)
T ss_pred HHHHHHHHhhcChhhHHHHHHHHHHHHhhC---CHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHc
Confidence 899999999988889999999999999652 233322222344666899997 78899999999999998876
No 187
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.20 E-value=8.4 Score=46.80 Aligned_cols=285 Identities=15% Similarity=0.120 Sum_probs=151.4
Q ss_pred ChHHHHHHhhcCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHhcCCChhHHHHHHHHHHHhccChhhhhhhh
Q 001733 351 VLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSSHRPVRHESLLLLLELSSTRSLCEKIG 430 (1019)
Q Consensus 351 ~i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~~~~~~~i~ 430 (1019)
..|.|=+.|.+.+..+..+|+.++.+|...+. | .+ ..++..|--++++...-.|-.|..+|..+++....+....
T Consensus 246 ~~~fl~s~l~~K~emV~~EaArai~~l~~~~~--r-~l--~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~c 320 (865)
T KOG1078|consen 246 LFPFLESCLRHKSEMVIYEAARAIVSLPNTNS--R-EL--APAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVC 320 (865)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhccccCH--h-hc--chHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccccc
Confidence 35556667777888999999999999963332 1 11 1277788888888888999999999999987544333221
Q ss_pred cccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCccc
Q 001733 431 SIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDS 510 (1019)
Q Consensus 431 ~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~ 510 (1019)
.--+..||.-. +..+...|...|.. ...+.|+.++.+ -|+.++.=+.++..-+..++..+|... .|.
T Consensus 321 --N~elE~lItd~-----NrsIat~AITtLLK-TG~e~sv~rLm~--qI~~fv~disDeFKivvvdai~sLc~~--fp~- 387 (865)
T KOG1078|consen 321 --NLDLESLITDS-----NRSIATLAITTLLK-TGTESSVDRLMK--QISSFVSDISDEFKIVVVDAIRSLCLK--FPR- 387 (865)
T ss_pred --chhHHhhhccc-----ccchhHHHHHHHHH-hcchhHHHHHHH--HHHHHHHhccccceEEeHHHHHHHHhh--ccH-
Confidence 12233333322 11222223333221 122233333332 122223222222222222333322211 110
Q ss_pred ccccccchHHHHHHHHhc-CChHHHHHHHHHHHHhhcCCcchHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHH
Q 001733 511 KINVPGRAASTLIRMVHS-GNSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILAN 589 (1019)
Q Consensus 511 ~~~i~~~~i~~Lv~lL~~-~~~~~~~~A~~aL~~Ls~~~~~~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~ 589 (1019)
+. ...+.-|-.+|+. |.-+.+.....++..+....+.. +.-++..|.+.+.+. ....-+..+|..
T Consensus 388 k~---~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pds----Ke~~L~~LCefIEDc-------e~~~i~~rILhl 453 (865)
T KOG1078|consen 388 KH---TVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDS----KERGLEHLCEFIEDC-------EFTQIAVRILHL 453 (865)
T ss_pred HH---HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcch----hhHHHHHHHHHHHhc-------cchHHHHHHHHH
Confidence 00 0134555566654 44566667777776666533221 122445555555433 334455565555
Q ss_pred HHhcCCCcccccccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhc
Q 001733 590 ILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVIN 669 (1019)
Q Consensus 590 L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~ 669 (1019)
|...++... .-...+..+...+.- .+..++..|+.+|..+....... + ......|.+.+.
T Consensus 454 LG~EgP~a~-----------~Pskyir~iyNRviL-En~ivRaaAv~alaKfg~~~~~l---~-----~sI~vllkRc~~ 513 (865)
T KOG1078|consen 454 LGKEGPKAP-----------NPSKYIRFIYNRVIL-ENAIVRAAAVSALAKFGAQDVVL---L-----PSILVLLKRCLN 513 (865)
T ss_pred HhccCCCCC-----------CcchhhHHHhhhhhh-hhhhhHHHHHHHHHHHhcCCCCc---c-----ccHHHHHHHHhc
Confidence 544332111 011222222222222 67889999999999987433221 1 133345668889
Q ss_pred CCCHHHHHHHHHHHHHhC
Q 001733 670 NPHDELAVAAIKLLTTLS 687 (1019)
Q Consensus 670 ~~~~~vr~~A~~~L~~Ls 687 (1019)
+.++++|..|...|.++.
T Consensus 514 D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 514 DSDDEVRDRATFYLKNLE 531 (865)
T ss_pred CchHHHHHHHHHHHHHhh
Confidence 999999999999999887
No 188
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=94.03 E-value=0.71 Score=45.53 Aligned_cols=118 Identities=19% Similarity=0.229 Sum_probs=92.1
Q ss_pred HHhcCCHHHHHHHhcCCCh------hHHHHHHHHHHHhccChhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHH
Q 001733 388 IAETMDISILIKLLSSSHR------PVRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILR 461 (1019)
Q Consensus 388 I~~~g~i~~Lv~lL~~~~~------~~r~~Aa~~L~~Ls~~~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~ 461 (1019)
.+..|++..|++++.++.. +....+..++.+|-.+.-.-..... ...|..++........|+.+...|...|.
T Consensus 7 FI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~-~~FI~Kia~~Vn~~~~d~~i~q~sLaILE 85 (160)
T PF11841_consen 7 FISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLS-DSFIKKIASYVNSSAMDASILQRSLAILE 85 (160)
T ss_pred HHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhcc-HHHHHHHHHHHccccccchHHHHHHHHHH
Confidence 4567889999999988763 6667788888888877653344333 66788888888755558899999999999
Q ss_pred HhcCCCCchHHHHh-cCChHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 001733 462 NLERNPDNIKCMAE-NGLLEPLMHHLNEGSEEIQMEMASYLGEIVL 506 (1019)
Q Consensus 462 nLs~~~~n~~~i~~-~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~ 506 (1019)
++..+.......++ .=-++.|+.+|...+++++.++...+..|-.
T Consensus 86 s~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~ 131 (160)
T PF11841_consen 86 SIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFL 131 (160)
T ss_pred HHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 99988777555554 4568889999999999999999998877654
No 189
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.02 E-value=3.3 Score=53.56 Aligned_cols=204 Identities=13% Similarity=0.102 Sum_probs=115.4
Q ss_pred hhhhHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHhCcCC
Q 001733 611 SDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTLSPYL 690 (1019)
Q Consensus 611 ~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~~vr~~A~~~L~~Ls~~~ 690 (1019)
..+.|+++++|-++.....-+.-|+.-+..++.... +.+...++ ..+|.|.++=-+++..||.+-...=..|...
T Consensus 954 qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~--~kl~p~l~--kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D- 1028 (1702)
T KOG0915|consen 954 QPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAG--EKLEPYLK--KLIPRLYRYQYDPDKKVQDAMTSIWNALITD- 1028 (1702)
T ss_pred ChHHHHHHHHHhhhhchhhcccchhhchHHHHHHHH--HhhhhHHH--HhhHHHhhhccCCcHHHHHHHHHHHHHhccC-
Confidence 367899999999875445556667777777766432 23333333 3577777888899999998665555555532
Q ss_pred ChhHHHHhhhcCCChhHhhcccCCCCcChHHHHHHHHHHhccCCCCh--hhHHHHHhCCChHHHHHHHHhhhccCCCccc
Q 001733 691 GHTLVERLCKTRGQPENLIQCPTETIHITEKQAVSAKFLAKLPHQNL--TLNLALSARNVVPTILQTINLIQRSGTRTSR 768 (1019)
Q Consensus 691 ~~~~~~~l~~~~g~i~~LV~lL~~~~~~~~~~~~A~~~L~nL~~~~~--~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~ 768 (1019)
....++..- ...+..|+.-|.+. ...+|.+++-+|..|..+.+ +..+.+- .....+.+.+.+.+.+
T Consensus 1029 ~k~~vd~y~--neIl~eLL~~lt~k--ewRVReasclAL~dLl~g~~~~~~~e~lp--elw~~~fRvmDDIKEs------ 1096 (1702)
T KOG0915|consen 1029 SKKVVDEYL--NEILDELLVNLTSK--EWRVREASCLALADLLQGRPFDQVKEKLP--ELWEAAFRVMDDIKES------ 1096 (1702)
T ss_pred hHHHHHHHH--HHHHHHHHHhccch--hHHHHHHHHHHHHHHHcCCChHHHHHHHH--HHHHHHHHHHHHHHHH------
Confidence 233333322 13456666666554 47899999999999876433 2222221 3344455555544322
Q ss_pred hhhhHHHHHHHHHHHHhcCCC---chhHHHHHHhCCchHHHHHH-HhcCCcHHHHHHHHHHHhhhcccCC
Q 001733 769 YASAYLEGLIGILVRFTTTLY---EPQILFLARTHNFTSVFTEL-LMKTSCDEVQKLAAIGLENLSSESI 834 (1019)
Q Consensus 769 ~~~~~~e~a~~aL~~lt~~~~---~~~~~~~~~~~g~i~~Lv~L-L~~~~~~~vk~~AA~aL~nLs~~~~ 834 (1019)
....-+.++.+|..++.... ++.--+.+. ..++|.|+.- ..+ .-++||+.+...+..|+.++.
T Consensus 1097 -VR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l-~~iLPfLl~~gims-~v~evr~~si~tl~dl~Kssg 1163 (1702)
T KOG0915|consen 1097 -VREAADKAARALSKLCVRICDVTNGAKGKEAL-DIILPFLLDEGIMS-KVNEVRRFSIGTLMDLAKSSG 1163 (1702)
T ss_pred -HHHHHHHHHHHHHHHHhhhcccCCcccHHHHH-HHHHHHHhccCccc-chHHHHHHHHHHHHHHHHhch
Confidence 11222334444444433221 222222222 2455655421 112 468999999999999987764
No 190
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=94.00 E-value=0.54 Score=46.37 Aligned_cols=116 Identities=15% Similarity=0.064 Sum_probs=91.5
Q ss_pred cchHHHHHHhhhcCCC----ChHHHHHHHHHHHHhcCCCCchHHHHhcCChHHHHHHhccC--CHHHHHHHHHHHHHhcc
Q 001733 433 PGGILVLITFKFNWSI----DVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEG--SEEIQMEMASYLGEIVL 506 (1019)
Q Consensus 433 ~g~I~~LV~lL~~~~~----~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~lL~~~--~~~~~~~aa~~L~~La~ 506 (1019)
.||+..|++++.++.. ..+....++.++..|-.+.-.-+...+...|...+..+... +..+...++.+|.+++.
T Consensus 10 ~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl 89 (160)
T PF11841_consen 10 RDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVL 89 (160)
T ss_pred ccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHh
Confidence 7899999999985543 34778889999999987766566777777777788887643 47888899999999998
Q ss_pred Cccc-ccccccc-hHHHHHHHHhcCChHHHHHHHHHHHHhhcCC
Q 001733 507 GHDS-KINVPGR-AASTLIRMVHSGNSLTRRIAFKALMQISSHH 548 (1019)
Q Consensus 507 ~~~~-~~~i~~~-~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~ 548 (1019)
+... ...+.+. .++.|+..|...++.++.+|+..+-.|-...
T Consensus 90 ~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA 133 (160)
T PF11841_consen 90 NSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKA 133 (160)
T ss_pred CCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Confidence 6655 5555556 5899999999999999999998887775443
No 191
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=93.95 E-value=2.9 Score=43.77 Aligned_cols=150 Identities=13% Similarity=0.075 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHHhcccccchHHHhcCChHHHHHHhhc-----CCHHHHHHHHHHHHhhccCChhH-HHHHHhcCCHHH
Q 001733 323 RMVLEAIKDLQTVCQRKQYNKVQVRNVGVLPLLTKLLEY-----KDRNVRCAAMELLRQLVVEDDEG-KEMIAETMDISI 396 (1019)
Q Consensus 323 ~~~~~Al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~s-----~~~~~~~~Al~~L~~La~~~~~~-k~~I~~~g~i~~ 396 (1019)
..+..|+.-|+-.+.. ++-|..+.++..--.|-.+|.. +.+-.|..++.++..|.+.++.. -..+...+.||.
T Consensus 94 nRVcnaL~LlQcvASH-pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPl 172 (293)
T KOG3036|consen 94 NRVCNALALLQCVASH-PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPL 172 (293)
T ss_pred chHHHHHHHHHHHhcC-cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHH
Confidence 4567788777766655 6667777777654445556642 35678999999999998655443 445567899999
Q ss_pred HHHHhcCCChhHHHHHHHHHHHhccChhhhhhhhcccc-------hHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCc
Q 001733 397 LIKLLSSSHRPVRHESLLLLLELSSTRSLCEKIGSIPG-------GILVLITFKFNWSIDVFAAEIADQILRNLERNPDN 469 (1019)
Q Consensus 397 Lv~lL~~~~~~~r~~Aa~~L~~Ls~~~~~~~~i~~~~g-------~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n 469 (1019)
.++.+..|+...+..|+-++..+-.++.....|..... .+..+|.-+. ...++...+.+..+..+|+.++..
T Consensus 173 CLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~-~~ps~RllKhviRcYlrLsdnpra 251 (293)
T KOG3036|consen 173 CLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLV-SMPSPRLLKHVIRCYLRLSDNPRA 251 (293)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcCCHHH
Confidence 99999999999999999999988887765555443322 2333333332 456788899999999999988876
Q ss_pred hHHHH
Q 001733 470 IKCMA 474 (1019)
Q Consensus 470 ~~~i~ 474 (1019)
+..+.
T Consensus 252 r~aL~ 256 (293)
T KOG3036|consen 252 RAALR 256 (293)
T ss_pred HHHHH
Confidence 66654
No 192
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=93.94 E-value=1.1 Score=47.79 Aligned_cols=224 Identities=14% Similarity=0.161 Sum_probs=129.4
Q ss_pred ChHHHHHHHHHHHHhcCCCC---ch-HHHHhc-CChHHHHHHhcc-------CC-----HHHHHHHHHHHHHhccCcccc
Q 001733 449 DVFAAEIADQILRNLERNPD---NI-KCMAEN-GLLEPLMHHLNE-------GS-----EEIQMEMASYLGEIVLGHDSK 511 (1019)
Q Consensus 449 ~~~~~~~A~~aL~nLs~~~~---n~-~~i~~~-G~i~~Lv~lL~~-------~~-----~~~~~~aa~~L~~La~~~~~~ 511 (1019)
+++.++.| |..|+...+ +. ..+..+ |.+..|++=+-+ .+ ..-..+++..|.-+|++++.|
T Consensus 8 ~~~~Re~A---l~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr 84 (262)
T PF04078_consen 8 NPETRENA---LLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETR 84 (262)
T ss_dssp SHHHHHHH---HHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTH
T ss_pred CcchHHHH---HHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHH
Confidence 45555554 444443333 22 233344 877777663322 11 134457777888889999999
Q ss_pred cccccc-hHHHHHHHHhcC-----ChHHHHHHHHHHHHhhcCCcc--hHHHHHcCcHHHHHHHHhhhccCCCChhHHHHH
Q 001733 512 INVPGR-AASTLIRMVHSG-----NSLTRRIAFKALMQISSHHPS--CKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEA 583 (1019)
Q Consensus 512 ~~i~~~-~i~~Lv~lL~~~-----~~~~~~~A~~aL~~Ls~~~~~--~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A 583 (1019)
..+.+. ..--|..+|... ..-+|-.++++++.|...++. ...+.+..++|..+..|..+ ..-.|..|
T Consensus 85 ~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~G-----selSKtvA 159 (262)
T PF04078_consen 85 MPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFG-----SELSKTVA 159 (262)
T ss_dssp HHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS------HHHHHHH
T ss_pred HHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhc-----cHHHHHHH
Confidence 998774 322233344332 245788899999999986543 56667899999999988753 24678888
Q ss_pred HHHHHHHHhcCCCcccccccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHH
Q 001733 584 AAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYS 663 (1019)
Q Consensus 584 ~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~ 663 (1019)
.-++..+-....+-.-++...+ ....-..++..++.-+....++.+-.+.+++-..|+.++... .+++. .+|.
T Consensus 160 tfIlqKIL~dd~GL~yiC~t~e-Rf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar----~aL~~--~LP~ 232 (262)
T PF04078_consen 160 TFILQKILLDDVGLNYICQTAE-RFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAR----EALRQ--CLPD 232 (262)
T ss_dssp HHHHHHHHHSHHHHHHHTSSHH-HHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHH----HHHHH--HS-G
T ss_pred HHHHHHHHcchhHHHHHhcCHH-HHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHH----HHHHH--hCcH
Confidence 8888888765433322211111 112233455555554444388999999999999999988763 33332 2221
Q ss_pred HH-----HhhcCCCHHHHHHHHHHHHHhC
Q 001733 664 LL-----EVINNPHDELAVAAIKLLTTLS 687 (1019)
Q Consensus 664 Lv-----~LL~~~~~~vr~~A~~~L~~Ls 687 (1019)
.+ .-+-.+|+.++..-..++.|+.
T Consensus 233 ~Lrd~~f~~~l~~D~~~k~~l~qLl~nl~ 261 (262)
T PF04078_consen 233 QLRDGTFSNILKDDPSTKRWLQQLLSNLN 261 (262)
T ss_dssp GGTSSTTTTGGCS-HHHHHHHHHHHHHTT
T ss_pred HHhcHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 11 0111235667777667776654
No 193
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=93.89 E-value=6 Score=49.54 Aligned_cols=74 Identities=20% Similarity=0.214 Sum_probs=52.5
Q ss_pred ccchHHHHHHhhhc---CCCChHHHHHHHHHHHHhcCCCCchHHHHhcCChHHHHHHhc----cCC----HHHHHHHHHH
Q 001733 432 IPGGILVLITFKFN---WSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLN----EGS----EEIQMEMASY 500 (1019)
Q Consensus 432 ~~g~I~~LV~lL~~---~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~lL~----~~~----~~~~~~aa~~ 500 (1019)
..||+..|+.++.. .+.+.+........|...+....||.++.+.|+++.|++.|. .+. +++.+....+
T Consensus 115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~I 194 (802)
T PF13764_consen 115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEI 194 (802)
T ss_pred cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHH
Confidence 47888888888752 122345566677788888888999999999999999999875 333 4555555555
Q ss_pred HHHhc
Q 001733 501 LGEIV 505 (1019)
Q Consensus 501 L~~La 505 (1019)
+..|.
T Consensus 195 iE~ll 199 (802)
T PF13764_consen 195 IESLL 199 (802)
T ss_pred HHHHH
Confidence 54443
No 194
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=93.89 E-value=0.26 Score=50.74 Aligned_cols=116 Identities=15% Similarity=0.137 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHhc----------------CChHHHHHHhccC------CHHHHHHHHHHHHHhccCcc
Q 001733 452 AAEIADQILRNLERNPDNIKCMAEN----------------GLLEPLMHHLNEG------SEEIQMEMASYLGEIVLGHD 509 (1019)
Q Consensus 452 ~~~~A~~aL~nLs~~~~n~~~i~~~----------------G~i~~Lv~lL~~~------~~~~~~~aa~~L~~La~~~~ 509 (1019)
....++..|.||+..+..+..+.+. .++..|++.+..| ..+-....+.+|.|++..++
T Consensus 11 ~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~ 90 (192)
T PF04063_consen 11 LADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPE 90 (192)
T ss_pred hHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHH
Confidence 4566778888888877776655432 3677788887662 24556788899999999999
Q ss_pred ccccccc---ch--HHHHHHHHhcCChHHHHHHHHHHHHhhcCCcchHHHHHc---CcHHHHHHHH
Q 001733 510 SKINVPG---RA--ASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEA---GIVQVMAEEM 567 (1019)
Q Consensus 510 ~~~~i~~---~~--i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~~~~l~~~---G~v~~Lv~lL 567 (1019)
+|..+.+ +. +..|+..+.+.+..-|.-++++|.|+|-+.+....+... +++|.|+--|
T Consensus 91 gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPL 156 (192)
T PF04063_consen 91 GRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPL 156 (192)
T ss_pred HHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhc
Confidence 9999865 23 667777777777778888999999999998888777763 4455544433
No 195
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=93.87 E-value=4.6 Score=45.16 Aligned_cols=192 Identities=15% Similarity=0.105 Sum_probs=110.8
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhccCccccccccc---chHHHHHHHHhcCChHHHHHHHHHHHHhhcC---CcchHHH
Q 001733 481 PLMHHLNEGSEEIQMEMASYLGEIVLGHDSKINVPG---RAASTLIRMVHSGNSLTRRIAFKALMQISSH---HPSCKIL 554 (1019)
Q Consensus 481 ~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~i~~---~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~---~~~~~~l 554 (1019)
-.+..|.+.+...|+.++..|.++....-....+.. ..+..+.+.++.|+.+-+..|+.++.-++-. ......+
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei 126 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI 126 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence 345555566778888888877776553332233322 2468888889988877777788877777654 2344555
Q ss_pred HHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCC-CcccccccccCcccchhhhHHHHHHH--HcCC------
Q 001733 555 VEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGL-EHHSLQVNSHGHTMVSDYVVYNIIYM--LKNS------ 625 (1019)
Q Consensus 555 ~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~-~~~~~~v~~~g~~l~~~~~i~~Ll~L--L~~~------ 625 (1019)
++ ...|+|..++.... .....+..|+.+|.-++--.. +...+ ...-..+..+... ++..
T Consensus 127 ~~-~~~~~L~~~l~d~s---~~~~~R~~~~~aLai~~fv~~~d~~~~--------~~~~~~le~if~~~~~~~~~~~~~~ 194 (309)
T PF05004_consen 127 FE-ELKPVLKRILTDSS---ASPKARAACLEALAICTFVGGSDEEET--------EELMESLESIFLLSILKSDGNAPVV 194 (309)
T ss_pred HH-HHHHHHHHHHhCCc---cchHHHHHHHHHHHHHHHhhcCChhHH--------HHHHHHHHHHHHHHhcCcCCCcccc
Confidence 54 46778888777543 123455555555555443211 11111 0000122211111 1111
Q ss_pred ---CCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHhC
Q 001733 626 ---TPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTLS 687 (1019)
Q Consensus 626 ---~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~~vr~~A~~~L~~Ls 687 (1019)
+++.+...|+.+-.-|...-+. ..+...+ ...++.|..+|++++.+||.+|..+|..|-
T Consensus 195 ~~~~~~~l~~aAL~aW~lLlt~~~~-~~~~~~~--~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 195 AAEDDAALVAAALSAWALLLTTLPD-SKLEDLL--EEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred cCCCccHHHHHHHHHHHHHHhcCCH-HHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 2356777777776666554432 2233222 246889999999999999999999887664
No 196
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=93.73 E-value=0.47 Score=50.76 Aligned_cols=101 Identities=20% Similarity=0.279 Sum_probs=86.1
Q ss_pred CHHHHHHHHHHHHHHHhcccccchHHHhcCChHHHHHHhh-cCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHH
Q 001733 321 SDRMVLEAIKDLQTVCQRKQYNKVQVRNVGVLPLLTKLLE-YKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIK 399 (1019)
Q Consensus 321 ~~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~-s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~ 399 (1019)
.+.....|++-|+.+|--+|..|.......++..|+.+|. +..+.++..++.+|..+-.+++.|....-+.+++..++.
T Consensus 104 ~~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ 183 (257)
T PF08045_consen 104 NDSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCS 183 (257)
T ss_pred hhHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHH
Confidence 3455778999999999999999999999999999999995 467899999999988776799999998889999999999
Q ss_pred HhcCCC--hhHHHHHHHHHHHhcc
Q 001733 400 LLSSSH--RPVRHESLLLLLELSS 421 (1019)
Q Consensus 400 lL~~~~--~~~r~~Aa~~L~~Ls~ 421 (1019)
++++.+ .++|...+.+|+-+..
T Consensus 184 llk~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 184 LLKSKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred HHccccccHHHhHHHHHHHHHHHc
Confidence 998754 4677777777766544
No 197
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=93.72 E-value=2.5 Score=45.79 Aligned_cols=257 Identities=11% Similarity=0.011 Sum_probs=144.2
Q ss_pred hcCCChhHHHHHHHHHHHhccChhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHHHhc-CCh
Q 001733 401 LSSSHRPVRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAEN-GLL 479 (1019)
Q Consensus 401 L~~~~~~~r~~Aa~~L~~Ls~~~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~-G~i 479 (1019)
++.=++-.|.-|+.+|.+|...++.|..+-....+-..++.++++.-++.+.+-+.+-+++-|+.++.....+-+. ..+
T Consensus 158 ~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli 237 (432)
T COG5231 158 SQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLI 237 (432)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3333455788999999999999998888766566778889999877777889999999999998776554222221 456
Q ss_pred HHHHHHhccC-CHHHHHHHHHHHHHhccCccccccccc----chHHHHHHHHhcC---ChHHHHHHHHHHHHhhcCCcch
Q 001733 480 EPLMHHLNEG-SEEIQMEMASYLGEIVLGHDSKINVPG----RAASTLIRMVHSG---NSLTRRIAFKALMQISSHHPSC 551 (1019)
Q Consensus 480 ~~Lv~lL~~~-~~~~~~~aa~~L~~La~~~~~~~~i~~----~~i~~Lv~lL~~~---~~~~~~~A~~aL~~Ls~~~~~~ 551 (1019)
.-|+++.+.. .+.+-..+++++.|++. ...|..|.. +-+.+-|++|..+ +.+++..--.+=..|-. +-
T Consensus 238 ~dli~iVk~~~keKV~Rlc~~Iv~n~~d-K~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~---~~ 313 (432)
T COG5231 238 NDLIAIVKERAKEKVLRLCCGIVANVLD-KSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQ---NT 313 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHh---hh
Confidence 6777777643 45677788899999887 222233322 3355556665543 22222111100000000 00
Q ss_pred HHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCcccccccccCcccc--hhhhHHHHHHHHcCCCCHH
Q 001733 552 KILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMV--SDYVVYNIIYMLKNSTPDE 629 (1019)
Q Consensus 552 ~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~--~~~~i~~Ll~LL~~~~~~~ 629 (1019)
+.+ -...--+.-|.+. .++-++..+.+=.-..+...+. .-.++..|.++++. ..+.
T Consensus 314 k~l---~~fD~Y~~ELdsg------------------~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~-n~~n 371 (432)
T COG5231 314 KKL---CIFDNYLNELDSG------------------RLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQS-NNPN 371 (432)
T ss_pred hhh---hHHHHHHHHHhhC------------------cccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhc-CCCC
Confidence 000 0000000001100 0000110000000000000011 12467788888887 4443
Q ss_pred -HHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHh
Q 001733 630 -LNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTL 686 (1019)
Q Consensus 630 -v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~~vr~~A~~~L~~L 686 (1019)
.-.-|+.-+..+.+.. ++.+..+...|+-..+..|+++++++++..|..++..+
T Consensus 372 t~i~vAc~Di~~~Vr~~---PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~ 426 (432)
T COG5231 372 TWICVACSDIFQLVRAS---PEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTC 426 (432)
T ss_pred ceEeeeHhhHHHHHHhC---chHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHH
Confidence 3333444444444432 34567778889999999999999999999999988654
No 198
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.57 E-value=0.049 Score=56.08 Aligned_cols=50 Identities=18% Similarity=0.299 Sum_probs=41.3
Q ss_pred CccccccCcccCCC----ceecCCCccccHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCc
Q 001733 232 ETFYCPLTKEIMDD----PVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLN 288 (1019)
Q Consensus 232 ~~~~Cpi~~~~m~d----Pv~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~~~~l~ 288 (1019)
..|.|||++=.|.+ -++.+|||.|.-+++.+.-. .+||+|+..++..+.+
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeika-------s~C~~C~a~y~~~dvI 163 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIKA-------SVCHVCGAAYQEDDVI 163 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHhhh-------ccccccCCcccccCeE
Confidence 36999999999999 45669999999999877443 4799999999877643
No 199
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=93.51 E-value=3.2 Score=46.37 Aligned_cols=206 Identities=15% Similarity=0.061 Sum_probs=112.7
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHhCcC--CCh
Q 001733 615 VYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTLSPY--LGH 692 (1019)
Q Consensus 615 i~~Ll~LL~~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~~vr~~A~~~L~~Ls~~--~~~ 692 (1019)
+...+..+.. .....|+.++..+..+..+.-..+.+.. +..-.+..+...++.+..+-+..|++++..++-. .+.
T Consensus 45 L~~~Id~l~e-K~~~~Re~aL~~l~~~l~~~~~~d~v~~--~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~ 121 (309)
T PF05004_consen 45 LKEAIDLLTE-KSSSTREAALEALIRALSSRYLPDFVED--RRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGE 121 (309)
T ss_pred HHHHHHHHHh-cCHHHHHHHHHHHHHHHHhcccHHHHHH--HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCc
Confidence 4455555665 6788999999998887765443222211 1123455666777777767777888888887743 233
Q ss_pred hHHHHhhhcCCChhHhhcccCCCCcChHHHHHHHHHH---hccCCCChhhHHHHHhCCChHHHHHHHHhhhccCC---Cc
Q 001733 693 TLVERLCKTRGQPENLIQCPTETIHITEKQAVSAKFL---AKLPHQNLTLNLALSARNVVPTILQTINLIQRSGT---RT 766 (1019)
Q Consensus 693 ~~~~~l~~~~g~i~~LV~lL~~~~~~~~~~~~A~~~L---~nL~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~---~~ 766 (1019)
...+.+. ...+.|.+++..+......+..++.+| .-+...+..-...++ ..+..+..... .+.+.. -.
T Consensus 122 ~~~ei~~---~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~-~~~~~~~~~~~ 195 (309)
T PF05004_consen 122 DSEEIFE---ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSI-LKSDGNAPVVA 195 (309)
T ss_pred cHHHHHH---HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHh-cCcCCCccccc
Confidence 3334333 356788888887653445555555444 444443433322111 12221111111 111111 01
Q ss_pred cchhhhHHHHHHHHHHHHhcCCCchhHHHHHHhCCchHHHHHHHhcCCcHHHHHHHHHHHhhhccc
Q 001733 767 SRYASAYLEGLIGILVRFTTTLYEPQILFLARTHNFTSVFTELLMKTSCDEVQKLAAIGLENLSSE 832 (1019)
Q Consensus 767 ~~~~~~~~e~a~~aL~~lt~~~~~~~~~~~~~~~g~i~~Lv~LL~~~~~~~vk~~AA~aL~nLs~~ 832 (1019)
......+...++.++.-+.... ++....... ...+|.|+.+|.+ .+..||..|..+|+=|-.-
T Consensus 196 ~~~~~~l~~aAL~aW~lLlt~~-~~~~~~~~~-~~~~~~l~~lL~s-~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 196 AEDDAALVAAALSAWALLLTTL-PDSKLEDLL-EEALPALSELLDS-DDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred CCCccHHHHHHHHHHHHHHhcC-CHHHHHHHH-HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHH
Confidence 1122345555555444333222 332222222 3568999999999 8999999999999866443
No 200
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.50 E-value=6.3 Score=48.05 Aligned_cols=244 Identities=14% Similarity=-0.022 Sum_probs=134.5
Q ss_pred CCcchHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCcccccccccCcccchhhhHHHHHHHHcCCC
Q 001733 547 HHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNST 626 (1019)
Q Consensus 547 ~~~~~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~ 626 (1019)
....+...++.|+...|+.+..... ...+.++..+|.. ...-.++ ....+++.+...++...
T Consensus 493 ~K~~~~~~Ik~~~~~aLlrl~~~q~-----e~akl~~~~aL~~-~i~f~~~------------~~~~v~~~~~s~~~~d~ 554 (748)
T KOG4151|consen 493 EKYERAKKIKPGGYEALLRLGQQQF-----EEAKLKWYHALAG-KIDFPGE------------RSYEVVKPLDSALHNDE 554 (748)
T ss_pred hHHhcCccccccHHHHHHHHHHHhc-----hHHHHHHHHHHhh-hcCCCCC------------chhhhhhhhcchhhhhH
Confidence 3344677889999999999877542 3677777777772 0111111 23456677766666522
Q ss_pred CHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHhCcCCChhHHHHh-hhcCCCh
Q 001733 627 PDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTLSPYLGHTLVERL-CKTRGQP 705 (1019)
Q Consensus 627 ~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~~vr~~A~~~L~~Ls~~~~~~~~~~l-~~~~g~i 705 (1019)
.-.-...++.++.+|++.... .+..|.+..+++.+-.++...++.+|.+++.++.||.-+ ....+.. ......+
T Consensus 555 ~~~en~E~L~altnLas~s~s---~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~--~~~~e~si~e~~~~l 629 (748)
T KOG4151|consen 555 KGLENFEALEALTNLASISES---DRQKILKEKALGKIEELMTEENPALQRAALESIINLLWS--PLLYERSIVEYKDRL 629 (748)
T ss_pred HHHHHHHHHHHhhcccCcchh---hHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhh--HHHHHHHhhccccCc
Confidence 222345677777888776643 344566666677777888899999999999999999853 2222222 2112344
Q ss_pred hHhhcccCCCCcChHHHHHHHHHHhccCCCChhhHH-HHHhCCChHHHHHHHHhhhccCCCccchhhhHHHHHHHHHHHH
Q 001733 706 ENLIQCPTETIHITEKQAVSAKFLAKLPHQNLTLNL-ALSARNVVPTILQTINLIQRSGTRTSRYASAYLEGLIGILVRF 784 (1019)
Q Consensus 706 ~~LV~lL~~~~~~~~~~~~A~~~L~nL~~~~~~~~~-~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~l 784 (1019)
+.....+.. . ++....++++++.-+...+..... .+.-......++.++.+.. ..++..-+...+++
T Consensus 630 ~~w~~~~e~-~-~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~----------~~~qhrgl~~~ln~ 697 (748)
T KOG4151|consen 630 KLWNLNLEV-A-DEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDED----------DEIQHRGLVIILNL 697 (748)
T ss_pred hHHHHHHHh-h-hhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCch----------hhhhhhhhhhhhhH
Confidence 444444433 2 345566677776655443433333 3334456666777765421 11111111122222
Q ss_pred hcCCCchhHHHHHHhCCchHHHHHHHhcCCcHHHHHHHHHHHhh
Q 001733 785 TTTLYEPQILFLARTHNFTSVFTELLMKTSCDEVQKLAAIGLEN 828 (1019)
Q Consensus 785 t~~~~~~~~~~~~~~~g~i~~Lv~LL~~~~~~~vk~~AA~aL~n 828 (1019)
... .-+....+.+...++.+..+=+. .-...++.++.+|..
T Consensus 698 ~~~--~~ei~~~~~~~~~~~~l~~~~~~-~~a~~~~~~~~~l~~ 738 (748)
T KOG4151|consen 698 FEA--LFEIAEKIFETEVMELLSGLQKL-NRAPKREDAAPCLSA 738 (748)
T ss_pred HHH--HHHHHHHhccchHHHHHHHHHHh-hhhhhhhhhhhHHHH
Confidence 211 33444444555555555544443 334555566666543
No 201
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.45 E-value=0.056 Score=57.09 Aligned_cols=47 Identities=11% Similarity=0.279 Sum_probs=37.3
Q ss_pred cccccCcccCC--Cce-ecCCCccccHHHHHHHHhhhccCCCCCCCCCCCCCCC
Q 001733 234 FYCPLTKEIMD--DPV-TIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMS 284 (1019)
Q Consensus 234 ~~Cpi~~~~m~--dPv-~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~~ 284 (1019)
.-|-||.+=|. |-+ ++||.|.|-+.||++|... ....||+|+.+++.
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~----y~~~CPvCrt~iPP 373 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLG----YSNKCPVCRTAIPP 373 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhh----hcccCCccCCCCCC
Confidence 56899987553 444 5699999999999999986 45679999987754
No 202
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=93.45 E-value=0.056 Score=58.00 Aligned_cols=49 Identities=20% Similarity=0.331 Sum_probs=42.5
Q ss_pred CCCccccccCcccCCCceec-CCCccccHHHHHHHHhhhccCCCCCCCCCCCCCC
Q 001733 230 LYETFYCPLTKEIMDDPVTI-ESGVTYERNAITAWFEKFETSGDIFCPTTGKKLM 283 (1019)
Q Consensus 230 ~~~~~~Cpi~~~~m~dPv~~-~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~ 283 (1019)
+|+.-.||+|..--.+|-++ -||..||-.||-.+..+ +..||+|+.+..
T Consensus 297 ~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~-----~~~CPVT~~p~~ 346 (357)
T KOG0826|consen 297 PPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN-----YGHCPVTGYPAS 346 (357)
T ss_pred CCccccChhHHhccCCCceEEecceEEeHHHHHHHHHh-----cCCCCccCCcch
Confidence 66788999999999988877 55999999999999987 567999998754
No 203
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=93.32 E-value=1.7 Score=46.38 Aligned_cols=152 Identities=13% Similarity=0.097 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHHhcccccchHHHhcCChHHHHHHhhcCC-----HHHHHHHHHHHHhhccCC-hhHHHHHHhcCCHHH
Q 001733 323 RMVLEAIKDLQTVCQRKQYNKVQVRNVGVLPLLTKLLEYKD-----RNVRCAAMELLRQLVVED-DEGKEMIAETMDISI 396 (1019)
Q Consensus 323 ~~~~~Al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~s~~-----~~~~~~Al~~L~~La~~~-~~~k~~I~~~g~i~~ 396 (1019)
..++.|+.=|+-.|. +++.|..+.++...-.|-.+|...+ +..|..++.+++.|.+.+ .+.-..+.+.+.||.
T Consensus 65 nRVcnaLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiipl 143 (262)
T PF04078_consen 65 NRVCNALALLQCVAS-HPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPL 143 (262)
T ss_dssp HHHHHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHH
T ss_pred HHHHHHHHHHHHHHc-ChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHH
Confidence 457788888888887 6778888999987767778886532 567888999999988633 344555678899999
Q ss_pred HHHHhcCCChhHHHHHHHHHHHhccChhhhhhhhcccchHHHHHHhhh------cCCCChHHHHHHHHHHHHhcCCCCch
Q 001733 397 LIKLLSSSHRPVRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKF------NWSIDVFAAEIADQILRNLERNPDNI 470 (1019)
Q Consensus 397 Lv~lL~~~~~~~r~~Aa~~L~~Ls~~~~~~~~i~~~~g~I~~LV~lL~------~~~~~~~~~~~A~~aL~nLs~~~~n~ 470 (1019)
.++.+..|+.-.+-.|.-++..+-.++.....+..+..-.-.+..+|. ....++...+....+-..|+.++..+
T Consensus 144 cLr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar 223 (262)
T PF04078_consen 144 CLRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAR 223 (262)
T ss_dssp HHHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHH
Confidence 999999998888999999999998888777776665444444433332 13447788899999999999998888
Q ss_pred HHHHh
Q 001733 471 KCMAE 475 (1019)
Q Consensus 471 ~~i~~ 475 (1019)
..+.+
T Consensus 224 ~aL~~ 228 (262)
T PF04078_consen 224 EALRQ 228 (262)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77663
No 204
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.08 E-value=3.9 Score=49.18 Aligned_cols=421 Identities=13% Similarity=0.125 Sum_probs=219.8
Q ss_pred HHHHHHhcccccchHHHhcCChHHHHHHhhcCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHh-cCCChhHH
Q 001733 331 DLQTVCQRKQYNKVQVRNVGVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLL-SSSHRPVR 409 (1019)
Q Consensus 331 ~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL-~~~~~~~r 409 (1019)
.||-+|+-++.. . =...+|.+...|.+.+.-+|++|+-++..+=+.. +.+. .++-+.+-+.| ...++..+
T Consensus 119 TLRFLckLkE~E--L--lepl~p~IracleHrhsYVRrNAilaifsIyk~~----~~L~-pDapeLi~~fL~~e~DpsCk 189 (948)
T KOG1058|consen 119 TLRFLCKLKEPE--L--LEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNF----EHLI-PDAPELIESFLLTEQDPSCK 189 (948)
T ss_pred hhhhhhhcCcHH--H--hhhhHHHHHHHHhCcchhhhhhhheeehhHHhhh----hhhc-CChHHHHHHHHHhccCchhH
Confidence 366666654431 1 1346888888999999999999998887764221 1221 23333333444 45678888
Q ss_pred HHHHHHHHHhccChhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHHHhcCChHHHHHHhccC
Q 001733 410 HESLLLLLELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEG 489 (1019)
Q Consensus 410 ~~Aa~~L~~Ls~~~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~lL~~~ 489 (1019)
++|-..|+..-... ....++. .|.. . ++=++..+-.....++..|....+ -++-.|..++.+|.+.
T Consensus 190 RNAFi~L~~~D~Er-Al~Yl~~---~idq----i--~~~~~~LqlViVE~Irkv~~~~p~----~~~~~i~~i~~lL~st 255 (948)
T KOG1058|consen 190 RNAFLMLFTTDPER-ALNYLLS---NIDQ----I--PSFNDSLQLVIVELIRKVCLANPA----EKARYIRCIYNLLSST 255 (948)
T ss_pred HHHHHHHHhcCHHH-HHHHHHh---hHhh----c--cCccHHHHHHHHHHHHHHHhcCHH----HhhHHHHHHHHHHhcC
Confidence 88887776653211 0111110 0000 0 111222333334455555532211 1234677889999988
Q ss_pred CHHHHHHHHHHHHHhccCcccccccccchHHHHHHHHhcCC-hHHHHHHHHHHHHhhcCCcchHHHHHcCcHHHHHHHHh
Q 001733 490 SEEIQMEMASYLGEIVLGHDSKINVPGRAASTLIRMVHSGN-SLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMF 568 (1019)
Q Consensus 490 ~~~~~~~aa~~L~~La~~~~~~~~i~~~~i~~Lv~lL~~~~-~~~~~~A~~aL~~Ls~~~~~~~~l~~~G~v~~Lv~lL~ 568 (1019)
++.++.+++.+|..|+.+|..- ..+...+++++-..+ ..++---+.-|..+. .....+. .|.+--.+.+|.
T Consensus 256 ssaV~fEaa~tlv~lS~~p~al----k~Aa~~~i~l~~kesdnnvklIvldrl~~l~---~~~~~il-~~l~mDvLrvLs 327 (948)
T KOG1058|consen 256 SSAVIFEAAGTLVTLSNDPTAL----KAAASTYIDLLVKESDNNVKLIVLDRLSELK---ALHEKIL-QGLIMDVLRVLS 327 (948)
T ss_pred CchhhhhhcceEEEccCCHHHH----HHHHHHHHHHHHhccCcchhhhhHHHHHHHh---hhhHHHH-HHHHHHHHHHcC
Confidence 9999999999998888766422 223345555544322 223333333333333 2212222 233344445565
Q ss_pred hhccCCCChhHHHHHHHHHHHHHhcCCCcccccccccCcccchhhhHHHHHHHHc-C-----CCCHHHHHHHHHHHHHHh
Q 001733 569 IRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLK-N-----STPDELNVHLIRILQCLT 642 (1019)
Q Consensus 569 ~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~-~-----~~~~~v~~~a~~aL~~La 642 (1019)
.++ -++++++..+...|+.+.. + +.++.-|-.=+. . ..+...|.-.++++..++
T Consensus 328 s~d-----ldvr~Ktldi~ldLvssrN----v-----------ediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~ca 387 (948)
T KOG1058|consen 328 SPD-----LDVRSKTLDIALDLVSSRN----V-----------EDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACA 387 (948)
T ss_pred ccc-----ccHHHHHHHHHHhhhhhcc----H-----------HHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHh
Confidence 543 4789999998888877632 1 122222221111 1 023456888888888887
Q ss_pred CCCCchHHHHHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHhCcCCChhHHHHhhhcCCChhHhhcccCCCCcChHHH
Q 001733 643 KSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCPTETIHITEKQ 722 (1019)
Q Consensus 643 ~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~~vr~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~LV~lL~~~~~~~~~~ 722 (1019)
..-.. +- +..++.|++++.+.++..-...+..++..-...+ .++ ...|+.|+.-+..-. ..++-
T Consensus 388 v~Fp~---~a-----atvV~~ll~fisD~N~~aas~vl~FvrE~iek~p-----~Lr--~~ii~~l~~~~~~ir-S~ki~ 451 (948)
T KOG1058|consen 388 VKFPE---VA-----ATVVSLLLDFISDSNEAAASDVLMFVREAIEKFP-----NLR--ASIIEKLLETFPQIR-SSKIC 451 (948)
T ss_pred hcChH---HH-----HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCc-----hHH--HHHHHHHHHhhhhhc-ccccc
Confidence 64432 11 2457789999999887655444444432221111 112 123445554443222 34667
Q ss_pred HHHHHHHhccCCCChhhHH--HHH--hCCChHHHHHHHHhhh---ccCCCcc------chhhh-------HHHHHHHHHH
Q 001733 723 AVSAKFLAKLPHQNLTLNL--ALS--ARNVVPTILQTINLIQ---RSGTRTS------RYASA-------YLEGLIGILV 782 (1019)
Q Consensus 723 ~~A~~~L~nL~~~~~~~~~--~l~--~~g~l~~Lv~lL~~~~---~~~~~~~------~~~~~-------~~e~a~~aL~ 782 (1019)
..|+|+++.-+.+..++.. ..+ ..|-+|.+..=+.... +...+.. +.... ..+.+.+.
T Consensus 452 rgalwi~GeYce~~~~i~~~~k~i~~slGEvp~~~sei~~~~~~~~~e~~~~~~s~~~~~~~~v~~dGTYAteSA~s~-- 529 (948)
T KOG1058|consen 452 RGALWILGEYCEGLSEIQSVIKIIRQSLGEVPIVCSEIERLHGEQTKEIELTSSSAPSSTKPKVLADGTYATESAFSS-- 529 (948)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHhccccceehHHHhhhhcccccccccccccccccCCCeeecCccchhhhhhcc--
Confidence 7899999988776664433 122 3477777655433211 0000000 00000 11111111
Q ss_pred HHhcCCCchhHHHHHHhCCchHHHHHHHhcCCcHHHHHHHHHHHhhhccc
Q 001733 783 RFTTTLYEPQILFLARTHNFTSVFTELLMKTSCDEVQKLAAIGLENLSSE 832 (1019)
Q Consensus 783 ~lt~~~~~~~~~~~~~~~g~i~~Lv~LL~~~~~~~vk~~AA~aL~nLs~~ 832 (1019)
+ .| ...++--|.|...+.+ |+.-+-..-|.+|..|+..
T Consensus 530 --~----~~-----~~~~~~rp~lrr~ll~-GdfflgA~la~tLtKl~lr 567 (948)
T KOG1058|consen 530 --S----SP-----TVKEADRPSLRRFLLT-GDFFLGAVLAITLTKLVLR 567 (948)
T ss_pred --c----cc-----chhhccchHHHHHhhc-chHHHHHHHHHHHHHHHHH
Confidence 0 11 1224555678888888 8988888888888777654
No 205
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=93.02 E-value=0.11 Score=36.13 Aligned_cols=29 Identities=24% Similarity=0.330 Sum_probs=25.6
Q ss_pred chHHHHHHHhcCCcHHHHHHHHHHHhhhcc
Q 001733 802 FTSVFTELLMKTSCDEVQKLAAIGLENLSS 831 (1019)
Q Consensus 802 ~i~~Lv~LL~~~~~~~vk~~AA~aL~nLs~ 831 (1019)
++|.|.+++++ ++++||..|+.+|++++.
T Consensus 1 llp~l~~~l~D-~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLND-PSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT--SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCC-CCHHHHHHHHHHHHHHHh
Confidence 47999999999 899999999999998864
No 206
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=93.02 E-value=7.2 Score=44.60 Aligned_cols=179 Identities=13% Similarity=0.067 Sum_probs=114.3
Q ss_pred ChHHHHHHHHHHHHhcCCCC----chHHHHhcCChHHHHHHhccCC------H-HHHHHHHHHHHHhccCccccccc-cc
Q 001733 449 DVFAAEIADQILRNLERNPD----NIKCMAENGLLEPLMHHLNEGS------E-EIQMEMASYLGEIVLGHDSKINV-PG 516 (1019)
Q Consensus 449 ~~~~~~~A~~aL~nLs~~~~----n~~~i~~~G~i~~Lv~lL~~~~------~-~~~~~aa~~L~~La~~~~~~~~i-~~ 516 (1019)
+.+-+-.|+-..-.++.+++ ||+.+.++=|.+.+=++|.+++ + -.+.-++.+|+-.|..++-...= .-
T Consensus 24 ~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElAsh~~~v 103 (698)
T KOG2611|consen 24 RDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELASHEEMV 103 (698)
T ss_pred ChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhccCHHHH
Confidence 33445556666666776655 7888999988888888887532 2 34456677888888887643211 11
Q ss_pred chHHHHHHHHhcC-Ch------HHHHHHHHHHHHhhcCCcchHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHH
Q 001733 517 RAASTLIRMVHSG-NS------LTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILAN 589 (1019)
Q Consensus 517 ~~i~~Lv~lL~~~-~~------~~~~~A~~aL~~Ls~~~~~~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~ 589 (1019)
+.||.|.+++..+ ++ .+.+.+-.+|..+++++.....++..|+++.+-+.-.-++. ..-+.-|.-++.-
T Consensus 104 ~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~----~~d~alal~Vlll 179 (698)
T KOG2611|consen 104 SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDG----SHDMALALKVLLL 179 (698)
T ss_pred HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCC----chhHHHHHHHHHH
Confidence 3589999998764 23 27888999999999998889999999999999875443321 1223444444444
Q ss_pred HHhcCCCcccccccccCcccchhhhHHHHHHHHcC------CCCHHHHHHHHHHHHHHhCCC
Q 001733 590 ILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKN------STPDELNVHLIRILQCLTKSP 645 (1019)
Q Consensus 590 L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~------~~~~~v~~~a~~aL~~La~~~ 645 (1019)
+......+. ..++.++.++.. ..+...+..+++.|..+-..+
T Consensus 180 ~~~~~~cw~--------------e~~~~flali~~va~df~~~~~a~KfElc~lL~~vl~~~ 227 (698)
T KOG2611|consen 180 LVSKLDCWS--------------ETIERFLALIAAVARDFAVLHNALKFELCHLLSAVLSSE 227 (698)
T ss_pred HHHhcccCc--------------CCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhCC
Confidence 444433332 223444444432 145667778888887654443
No 207
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=92.97 E-value=0.32 Score=44.26 Aligned_cols=69 Identities=14% Similarity=0.064 Sum_probs=57.9
Q ss_pred HHHHHHHHhccCCCChhhHHHHHhCCChHHHHHHHHhhhccCCCccchhhhHHHHHHHHHHHHhcCCCchhHHHHHHhC
Q 001733 722 QAVSAKFLAKLPHQNLTLNLALSARNVVPTILQTINLIQRSGTRTSRYASAYLEGLIGILVRFTTTLYEPQILFLARTH 800 (1019)
Q Consensus 722 ~~~A~~~L~nL~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~lt~~~~~~~~~~~~~~~ 800 (1019)
+...+.+|+|++..++.+...+.+.|++|.+++... -+...+-+.|.++.++.+++.+ ++++|+.+.+.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~--------iD~~nP~irEwai~aiRnL~e~--n~eNQ~~I~~L 71 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCN--------IDDHNPFIREWAIFAIRNLCEG--NPENQEFIAQL 71 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcC--------CCcccHHHHHHHHHHHHHHHhC--CHHHHHHHHhc
Confidence 456788999999999999999999999999998743 1234677899999999999986 99999988753
No 208
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=92.78 E-value=0.4 Score=43.50 Aligned_cols=70 Identities=13% Similarity=0.155 Sum_probs=49.3
Q ss_pred cchHHHHhhhccCchhhHHHHHHHHHhhhccCcchhhHHHHHHhccchHHHHHHHhhcChhhHHHHHHHHHHHHHh
Q 001733 889 KAVDRLLACLYHENVEVVEAALSALCTLLDEKVDVDKSVSMLSEVNAIQHVLNVVKEHRQEVLQQKSFWMIERFLV 964 (1019)
Q Consensus 889 gai~~Lv~lL~~~d~~v~~~Al~AL~~L~~d~~~~~~~~~~i~~~~~i~~l~~lL~~~~~~~~~~~A~~aL~~i~~ 964 (1019)
..++|++.++.++|.+|+.+|+.+|.+++.... +...-.-....+.|.+++. .+++.++..| +.|.|++.
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~----~~~l~~f~~IF~~L~kl~~-D~d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKVAR----GEILPYFNEIFDALCKLSA-DPDENVRSAA-ELLDRLLK 96 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHc-CCchhHHHHH-HHHHHHhc
Confidence 369999999999999999999999999995421 1111122344556777776 6677776655 67766653
No 209
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=92.65 E-value=0.26 Score=46.12 Aligned_cols=70 Identities=24% Similarity=0.311 Sum_probs=59.4
Q ss_pred ChHHHHHHh-hcCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHhcCCChhHHHHHHHHHHHhc
Q 001733 351 VLPLLTKLL-EYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSSHRPVRHESLLLLLELS 420 (1019)
Q Consensus 351 ~i~~Lv~lL-~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls 420 (1019)
.+..|+.+| .+.|+.+..-|+.-|..+++..++.|..+-+.|+=..+..++.++++++|..|..++..+-
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 477889999 4557888888888899999889999999988999999999999999999999999987663
No 210
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.63 E-value=0.082 Score=54.22 Aligned_cols=37 Identities=27% Similarity=0.418 Sum_probs=33.3
Q ss_pred CCCccccccCcccCCCceecCCCccccHHHHHHHHhh
Q 001733 230 LYETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEK 266 (1019)
Q Consensus 230 ~~~~~~Cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~ 266 (1019)
+.+.=+|.+|++-++|||+.+.||.|||.||-+++-.
T Consensus 40 iK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 40 IKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYILA 76 (303)
T ss_pred cCCcceeeeecccccCCccCCCCeeeeHHHHHHHHHH
Confidence 5455688999999999999999999999999998876
No 211
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=92.48 E-value=5.1 Score=50.79 Aligned_cols=262 Identities=15% Similarity=0.177 Sum_probs=148.0
Q ss_pred HHHHHHHhcC-CChhHHHHHHHHHHHhccChhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcC----CCC
Q 001733 394 ISILIKLLSS-SHRPVRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLER----NPD 468 (1019)
Q Consensus 394 i~~Lv~lL~~-~~~~~r~~Aa~~L~~Ls~~~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~----~~~ 468 (1019)
++.+...+++ .....+.+|+.+|..||..-..-..| ...+|-+|.++. ...++++..|+.+|..+.. .+.
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~L---DRVlPY~v~l~~--Ds~a~Vra~Al~Tlt~~L~~Vr~~~~ 498 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKL---DRVLPYFVHLLM--DSEADVRATALETLTELLALVRDIPP 498 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHH---hhhHHHHHHHhc--CchHHHHHHHHHHHHHHHhhccCCCc
Confidence 4555555554 34578899999999999853322223 457899999995 4567888888888877642 122
Q ss_pred chHHHHhcCChHHHHHHhcc-CCHHHHHHHHHHHHHhccC-------------------cccccccc---cchHHHH---
Q 001733 469 NIKCMAENGLLEPLMHHLNE-GSEEIQMEMASYLGEIVLG-------------------HDSKINVP---GRAASTL--- 522 (1019)
Q Consensus 469 n~~~i~~~G~i~~Lv~lL~~-~~~~~~~~aa~~L~~La~~-------------------~~~~~~i~---~~~i~~L--- 522 (1019)
+-..+.-.=.+|.|-.++.+ ....++..-|..|+.||.. +++..... +.....|
T Consensus 499 ~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~ 578 (1431)
T KOG1240|consen 499 SDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHT 578 (1431)
T ss_pred ccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHH
Confidence 22334444467777777776 3444555545555544421 11101110 0112222
Q ss_pred ----H-HHHhcCChHHHHHHHHHHHHhhcCCcchHHHHHcC----cHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhc
Q 001733 523 ----I-RMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAG----IVQVMAEEMFIRIIHNEPMNSKEEAAAILANILES 593 (1019)
Q Consensus 523 ----v-~lL~~~~~~~~~~A~~aL~~Ls~~~~~~~~l~~~G----~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~ 593 (1019)
| .+|.+..+-+|..-+..|.-||.. +.+++ .+..|+..|.... ..++-. ..-+|..-
T Consensus 579 V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~F------FGk~ksND~iLshLiTfLNDkD-----w~LR~a---FfdsI~gv 644 (1431)
T KOG1240|consen 579 VEQMVSSLLSDSPPIVKRALLESIIPLCVF------FGKEKSNDVILSHLITFLNDKD-----WRLRGA---FFDSIVGV 644 (1431)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHHHH------hhhcccccchHHHHHHHhcCcc-----HHHHHH---HHhhccce
Confidence 2 233333445555555556655532 11122 2444555444221 122211 12333221
Q ss_pred CCCcccccccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCCCH
Q 001733 594 GLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHD 673 (1019)
Q Consensus 594 ~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~ 673 (1019)
. +.| |..-.+++++|-|.+-|.. ..+.+-..|+++|..|+...-- ++ ..--..++...+||-+++.
T Consensus 645 s-----i~V---G~rs~seyllPLl~Q~ltD-~EE~Viv~aL~~ls~Lik~~ll----~K-~~v~~i~~~v~PlL~hPN~ 710 (1431)
T KOG1240|consen 645 S-----IFV---GWRSVSEYLLPLLQQGLTD-GEEAVIVSALGSLSILIKLGLL----RK-PAVKDILQDVLPLLCHPNL 710 (1431)
T ss_pred E-----EEE---eeeeHHHHHHHHHHHhccC-cchhhHHHHHHHHHHHHHhccc----ch-HHHHHHHHhhhhheeCchH
Confidence 1 111 1222467888888888888 8899999999999999985532 11 1111234456678889999
Q ss_pred HHHHHHHHHHHHhCc
Q 001733 674 ELAVAAIKLLTTLSP 688 (1019)
Q Consensus 674 ~vr~~A~~~L~~Ls~ 688 (1019)
-+|..++..+.....
T Consensus 711 WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 711 WIRRAVLGIIAAIAR 725 (1431)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999988877664
No 212
>PRK14707 hypothetical protein; Provisional
Probab=92.36 E-value=57 Score=44.53 Aligned_cols=255 Identities=13% Similarity=0.129 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHHHhcccccchHHHhcCChHHHHHHhhc--CCHHHHHHHHHHHH-hhccCChhHHHHHHhcCCHHHHHHH
Q 001733 324 MVLEAIKDLQTVCQRKQYNKVQVRNVGVLPLLTKLLEY--KDRNVRCAAMELLR-QLVVEDDEGKEMIAETMDISILIKL 400 (1019)
Q Consensus 324 ~~~~Al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~s--~~~~~~~~Al~~L~-~La~~~~~~k~~I~~~g~i~~Lv~l 400 (1019)
....++..|..+....+.-|..+ +..+|..+++-++. +++.++ .|+..|. .++ .++.-+..+ +...|...+.-
T Consensus 180 ~c~~aa~~la~~~~~~d~~~~~~-~~q~ia~~lNa~sKWp~~~~c~-~aa~~la~~l~-~~~~l~~~~-~~q~va~~lN~ 255 (2710)
T PRK14707 180 DCQAVAPRFAALVASDDRLRSAM-DAQGVATVLNALCKWPDTPDCG-NAVSALAERLA-DESRLRNEL-KPQELGNALNA 255 (2710)
T ss_pred hHHHHHHHHHHHhcCChhhhccc-chHHHHHHHHHHhcCCCChhHH-HHHHHHHHHHc-CcHHHHHhC-ChHHHHHHHHH
Confidence 34455555554444434444333 44556666666653 344544 4445554 454 444443333 45556666666
Q ss_pred hcC-CChhHHHHHHHHH-HHhccChhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHHHhcCC
Q 001733 401 LSS-SHRPVRHESLLLL-LELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGL 478 (1019)
Q Consensus 401 L~~-~~~~~r~~Aa~~L-~~Ls~~~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~ 478 (1019)
|+. .+..+-.+|+..| -.|..+...++.+. +-.+.-.++-|+.-.+.+.+...|...-..|...++-+.. .+.-.
T Consensus 256 lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~--~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~-~~~~~ 332 (2710)
T PRK14707 256 LSKWADTPVCAAAASALAERLVDDPGLRKALD--PINVTQALNALSKWADLPVCAEAAIALAERLADDPELCKA-LNARG 332 (2710)
T ss_pred HhcCCCchHHHHHHHHHHHHHhhhHHHHHhcC--HHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhc-cchHH
Confidence 654 4443444444444 44555555555442 3334444444543444444445555555556554433322 23334
Q ss_pred hHHHHHHhcc--CCHHHHHHHHHHHHHhccCcccccccccchHHHHHHHHhc-CChHHHHHHHHHHH-HhhcCCcchHHH
Q 001733 479 LEPLMHHLNE--GSEEIQMEMASYLGEIVLGHDSKINVPGRAASTLIRMVHS-GNSLTRRIAFKALM-QISSHHPSCKIL 554 (1019)
Q Consensus 479 i~~Lv~lL~~--~~~~~~~~aa~~L~~La~~~~~~~~i~~~~i~~Lv~lL~~-~~~~~~~~A~~aL~-~Ls~~~~~~~~l 554 (1019)
+.-.+.-|+. ++......+...-..|+.+++-+..+...++...+.-|.. +.......|+..|. .|..+.+-++.|
T Consensus 333 ~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~ 412 (2710)
T PRK14707 333 LSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGL 412 (2710)
T ss_pred HHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhc
Confidence 4555666654 2344444444455668888888888865577777776654 34445555555554 455444445444
Q ss_pred HHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHH
Q 001733 555 VEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANI 590 (1019)
Q Consensus 555 ~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L 590 (1019)
--.| |..++.-|.... ...+...|+..|+.-
T Consensus 413 ~~Q~-van~lnalsKWP----d~~~C~~aa~~lA~~ 443 (2710)
T PRK14707 413 DPQG-VSNALNALAKWP----DLPICGQAVSALAGR 443 (2710)
T ss_pred chhh-HHHHHHHhhcCC----cchhHHHHHHHHHHH
Confidence 4444 555556566542 125556666666543
No 213
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=91.87 E-value=5.4 Score=40.68 Aligned_cols=90 Identities=30% Similarity=0.317 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHhcccccchHHHhcCChHHHHHHhhcCCHHHHHHHHHHHHhhccCChhHHHHHHhcCC-HHHHHHHh
Q 001733 323 RMVLEAIKDLQTVCQRKQYNKVQVRNVGVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMD-ISILIKLL 401 (1019)
Q Consensus 323 ~~~~~Al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~-i~~Lv~lL 401 (1019)
..+..++..+.++|..-+.. . ...+|.+...|.++++.+|..|+.+|..|...+ .+.-.|- +..++.+|
T Consensus 3 ~vR~n~i~~l~DL~~r~~~~----v-e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d-----~ik~k~~l~~~~l~~l 72 (178)
T PF12717_consen 3 SVRNNAIIALGDLCIRYPNL----V-EPYLPNLYKCLRDEDPLVRKTALLVLSHLILED-----MIKVKGQLFSRILKLL 72 (178)
T ss_pred HHHHHHHHHHHHHHHhCcHH----H-HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC-----ceeehhhhhHHHHHHH
Confidence 44567778888888877642 2 235899999999999999999999999987322 1211243 48888999
Q ss_pred cCCChhHHHHHHHHHHHhccC
Q 001733 402 SSSHRPVRHESLLLLLELSST 422 (1019)
Q Consensus 402 ~~~~~~~r~~Aa~~L~~Ls~~ 422 (1019)
.+.++++|..|..++.+++..
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999875
No 214
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=91.66 E-value=43 Score=41.62 Aligned_cols=118 Identities=21% Similarity=0.146 Sum_probs=88.9
Q ss_pred HHHHHHHhcccccchHHHhcCChHHHHHHhhcCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHhcCCChhHH
Q 001733 330 KDLQTVCQRKQYNKVQVRNVGVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSSHRPVR 409 (1019)
Q Consensus 330 ~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~r 409 (1019)
-.|...++.+|+ .++. +++.+.+=|+++|+.+|..|+..|..+- ..+- -...++++.+++.++++.+|
T Consensus 77 lYl~~yak~~P~--~~lL---avNti~kDl~d~N~~iR~~AlR~ls~l~--~~el-----~~~~~~~ik~~l~d~~ayVR 144 (757)
T COG5096 77 LYLERYAKLKPE--LALL---AVNTIQKDLQDPNEEIRGFALRTLSLLR--VKEL-----LGNIIDPIKKLLTDPHAYVR 144 (757)
T ss_pred HHHHHHhccCHH--HHHH---HHHHHHhhccCCCHHHHHHHHHHHHhcC--hHHH-----HHHHHHHHHHHccCCcHHHH
Confidence 345556666662 1221 3677778888999999999999998883 2221 13468999999999999999
Q ss_pred HHHHHHHHHhccC-hhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcC
Q 001733 410 HESLLLLLELSST-RSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLER 465 (1019)
Q Consensus 410 ~~Aa~~L~~Ls~~-~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~ 465 (1019)
..|+-++.++-.. ++... ..|.+..+..++. ..||.+..+|..+|+.+..
T Consensus 145 k~Aalav~kly~ld~~l~~----~~g~~~~l~~l~~--D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 145 KTAALAVAKLYRLDKDLYH----ELGLIDILKELVA--DSDPIVIANALASLAEIDP 195 (757)
T ss_pred HHHHHHHHHHHhcCHhhhh----cccHHHHHHHHhh--CCCchHHHHHHHHHHHhch
Confidence 9999999999753 33333 4678888888884 5789999999999998864
No 215
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=91.66 E-value=0.15 Score=53.20 Aligned_cols=48 Identities=25% Similarity=0.369 Sum_probs=39.5
Q ss_pred CCccccccCcccCCCceec-CCCccccHHHHHHHHhhhccCCCCCCCCCCCC
Q 001733 231 YETFYCPLTKEIMDDPVTI-ESGVTYERNAITAWFEKFETSGDIFCPTTGKK 281 (1019)
Q Consensus 231 ~~~~~Cpi~~~~m~dPv~~-~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~ 281 (1019)
.-+++||||......||+- .|||.|+|..|....... ....||+-+-+
T Consensus 174 ~fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~---~~i~CPv~gC~ 222 (262)
T KOG2979|consen 174 VFSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDE---ITIRCPVLGCE 222 (262)
T ss_pred hhcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccC---ceeecccccCC
Confidence 3479999999999999987 999999999999988641 24569995543
No 216
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=91.61 E-value=0.23 Score=34.57 Aligned_cols=28 Identities=29% Similarity=0.293 Sum_probs=25.1
Q ss_pred hHHHHhhhccCchhhHHHHHHHHHhhhc
Q 001733 891 VDRLLACLYHENVEVVEAALSALCTLLD 918 (1019)
Q Consensus 891 i~~Lv~lL~~~d~~v~~~Al~AL~~L~~ 918 (1019)
++.|+++|.+++++|+.+|+.+|..++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 6889999999999999999999999874
No 217
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=91.58 E-value=9 Score=43.86 Aligned_cols=131 Identities=21% Similarity=0.205 Sum_probs=97.9
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhhccCCh---hHHHHHHhcCCHHHHHHHhcCCC-------hhHHHHHHHHHHHhccChh
Q 001733 355 LTKLLEYKDRNVRCAAMELLRQLVVEDD---EGKEMIAETMDISILIKLLSSSH-------RPVRHESLLLLLELSSTRS 424 (1019)
Q Consensus 355 Lv~lL~s~~~~~~~~Al~~L~~La~~~~---~~k~~I~~~g~i~~Lv~lL~~~~-------~~~r~~Aa~~L~~Ls~~~~ 424 (1019)
+..+++..+...|-.|+-..-.+.+.++ .+|+.+.++-+.+.+-++|.+++ ...+..++..|.-.+..++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 4556666666777777777767775443 46888999888899999997643 2467778888888888876
Q ss_pred hhhhhhcccchHHHHHHhhhcCCCChH------HHHHHHHHHHHhcCCCCchHHHHhcCChHHHHHHhc
Q 001733 425 LCEKIGSIPGGILVLITFKFNWSIDVF------AAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLN 487 (1019)
Q Consensus 425 ~~~~i~~~~g~I~~LV~lL~~~~~~~~------~~~~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~lL~ 487 (1019)
....= ..-..||.|.+.+. ..+|++ +.+++-.+|+..+..+.....++..|+++.+.++-.
T Consensus 96 lAsh~-~~v~~IP~llev~~-~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~ 162 (698)
T KOG2611|consen 96 LASHE-EMVSRIPLLLEVMS-KGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYE 162 (698)
T ss_pred hccCH-HHHHhhhHHHHHHH-hcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHh
Confidence 42211 11457999999987 344554 788999999999999999999999999999997643
No 218
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=91.32 E-value=47 Score=41.84 Aligned_cols=156 Identities=16% Similarity=0.143 Sum_probs=96.5
Q ss_pred CChHHHHHHhccC-----CHHHHHHHHHHHHHhccCccccccccc-chHHHHHHHHhcC-----ChHHHHHHHHHHHHhh
Q 001733 477 GLLEPLMHHLNEG-----SEEIQMEMASYLGEIVLGHDSKINVPG-RAASTLIRMVHSG-----NSLTRRIAFKALMQIS 545 (1019)
Q Consensus 477 G~i~~Lv~lL~~~-----~~~~~~~aa~~L~~La~~~~~~~~i~~-~~i~~Lv~lL~~~-----~~~~~~~A~~aL~~Ls 545 (1019)
.+.++.|+-|.+. +++.....+.++. + +|+..|++++.+- ........+..|..++
T Consensus 84 eAtE~~v~~l~~~~~~~~d~e~~~~~~~v~~-------------~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~ 150 (802)
T PF13764_consen 84 EATEEFVESLEDDSEEEEDPEQEFKIASVLA-------------ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCC 150 (802)
T ss_pred ccchhhHhhccCccccccCHHHHHHHHHHhh-------------cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHH
Confidence 4566777777642 3444555555543 4 5788888888762 2345566777788888
Q ss_pred cCCcchHHHHHcCcHHHHHHHHhhh---ccCCCChhHHHHHHHHHHHHHhcCCCccccccc-----ccCcccchhhhHHH
Q 001733 546 SHHPSCKILVEAGIVQVMAEEMFIR---IIHNEPMNSKEEAAAILANILESGLEHHSLQVN-----SHGHTMVSDYVVYN 617 (1019)
Q Consensus 546 ~~~~~~~~l~~~G~v~~Lv~lL~~~---~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~-----~~g~~l~~~~~i~~ 617 (1019)
.-..||+.+++.|+++.|++.+... ..+.....+-+....++..|....... .+... ..|..=....-+..
T Consensus 151 Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE~ll~ea~~~-~~~~~~~~~~~~~~~~~~~~~v~~ 229 (802)
T PF13764_consen 151 KVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIESLLSEANSS-SSSESKSSSSLSGSEEQDKEQVEM 229 (802)
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHhhh-hhhhccccccccccccccHHHHHH
Confidence 8889999999999999999988632 111112355666666666655432211 00000 00000013445667
Q ss_pred HHHHHcCC---CCHHHHHHHHHHHHHHhCCCC
Q 001733 618 IIYMLKNS---TPDELNVHLIRILQCLTKSPK 646 (1019)
Q Consensus 618 Ll~LL~~~---~~~~v~~~a~~aL~~La~~~~ 646 (1019)
|+..+++. .++.+....+++|-.|+....
T Consensus 230 lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~ 261 (802)
T PF13764_consen 230 LLERLNSPFVRSNPQILQALARILPFLTYGNE 261 (802)
T ss_pred HHHHhcCccccCCHHHHHHHHHHhhHHhcCCH
Confidence 77777652 468899999999999998664
No 219
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.23 E-value=0.14 Score=56.85 Aligned_cols=45 Identities=27% Similarity=0.558 Sum_probs=38.6
Q ss_pred CccccccCcccCCC---ceecCCCccccHHHHHHHHhhhccCCC--CCCCCCCC
Q 001733 232 ETFYCPLTKEIMDD---PVTIESGVTYERNAITAWFEKFETSGD--IFCPTTGK 280 (1019)
Q Consensus 232 ~~~~Cpi~~~~m~d---Pv~~~~g~t~~r~~I~~~~~~~~~~~~--~~cP~~~~ 280 (1019)
.-|.|||..+-=.| |+.+.|||..+|.+|.+-... |. ..||-|-.
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~n----g~~sfKCPYCP~ 382 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKN----GSQSFKCPYCPV 382 (394)
T ss_pred ceeecccchhhccCCCCCeeeeccceecHHHHHHHhhC----CCeeeeCCCCCc
Confidence 35899999999888 999999999999999998887 44 56888844
No 220
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=91.23 E-value=11 Score=42.45 Aligned_cols=200 Identities=13% Similarity=0.106 Sum_probs=141.6
Q ss_pred HHhcCChHHHHHHhhcCCHHHHHHHHHHHHhhccCChhHHH-----HHHhcCCHHHHHHHhc--CCChhHHHHHHHHHHH
Q 001733 346 VRNVGVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKE-----MIAETMDISILIKLLS--SSHRPVRHESLLLLLE 418 (1019)
Q Consensus 346 i~~~g~i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~-----~I~~~g~i~~Lv~lL~--~~~~~~r~~Aa~~L~~ 418 (1019)
+...+.++.|+..|..-+-+.+..+.....++-+...+++. .+... -|.++..|- .+++++--.+-..|++
T Consensus 72 i~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~--~peil~~L~~gy~~~dial~~g~mlRe 149 (335)
T PF08569_consen 72 IYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERH--RPEILDILLRGYENPDIALNCGDMLRE 149 (335)
T ss_dssp HHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT----THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhC--CHHHHHHHHHHhcCccccchHHHHHHH
Confidence 44568899999999999999999999988888755443332 23222 133333332 2456777888899999
Q ss_pred hccChhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhc-CCCCchHHHHhcC---ChHHHHHHhccCCHHHH
Q 001733 419 LSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLE-RNPDNIKCMAENG---LLEPLMHHLNEGSEEIQ 494 (1019)
Q Consensus 419 Ls~~~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs-~~~~n~~~i~~~G---~i~~Lv~lL~~~~~~~~ 494 (1019)
....+...+.|-. ...+-.+.+... ..+=++..+|..++..|- .+..-........ .+.....+|.+++--++
T Consensus 150 c~k~e~l~~~iL~-~~~f~~ff~~~~--~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk 226 (335)
T PF08569_consen 150 CIKHESLAKIILY-SECFWKFFKYVQ--LPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTK 226 (335)
T ss_dssp HTTSHHHHHHHHT-SGGGGGHHHHTT--SSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred HHhhHHHHHHHhC-cHHHHHHHHHhc--CCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence 9999887777765 667777888773 567789999999999875 4443334444332 34567778889999999
Q ss_pred HHHHHHHHHhccCccccccccc----c-hHHHHHHHHhcCChHHHHHHHHHHHHhhcCCcc
Q 001733 495 MEMASYLGEIVLGHDSKINVPG----R-AASTLIRMVHSGNSLTRRIAFKALMQISSHHPS 550 (1019)
Q Consensus 495 ~~aa~~L~~La~~~~~~~~i~~----~-~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~ 550 (1019)
..++..|+.|-.++.+...+.+ . -+..++.+|++.+..++-.|..+..-...++..
T Consensus 227 rqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K 287 (335)
T PF08569_consen 227 RQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNK 287 (335)
T ss_dssp HHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-
T ss_pred hhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCC
Confidence 9999999999998888765433 2 488889999999999999999999887776543
No 221
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=91.18 E-value=17 Score=40.42 Aligned_cols=171 Identities=16% Similarity=0.067 Sum_probs=115.1
Q ss_pred CCHHHHH-HHhcCCChhHHHHHHHHHHHhccChhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCC--
Q 001733 392 MDISILI-KLLSSSHRPVRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPD-- 468 (1019)
Q Consensus 392 g~i~~Lv-~lL~~~~~~~r~~Aa~~L~~Ls~~~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~-- 468 (1019)
+.+..|+ ..+++.++.+|+.|+.+|.-.+..+.. ++ ...++.+...+. .++..++..|+.+++.+....+
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~---~a--~~~l~l~~~~~~--~~~~~v~~~al~~l~Dll~~~g~~ 98 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKE---LA--KEHLPLFLQALQ--KDDEEVKITALKALFDLLLTHGID 98 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChH---HH--HHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHHcCch
Confidence 3444444 677888899999999999999886642 11 234667777774 4588899999999999863221
Q ss_pred chHH-------HHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCcccccccccchHHHHHHHHhc----CChHHHHHH
Q 001733 469 NIKC-------MAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDSKINVPGRAASTLIRMVHS----GNSLTRRIA 537 (1019)
Q Consensus 469 n~~~-------i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~i~~~~i~~Lv~lL~~----~~~~~~~~A 537 (1019)
.... ......+..+.+.|.+.+++++..++..++.|-....... ....+..|+-+--+ ++..++..-
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~--~~~vL~~Lll~yF~p~t~~~~~LrQ~L 176 (298)
T PF12719_consen 99 IFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD--PPKVLSRLLLLYFNPSTEDNQRLRQCL 176 (298)
T ss_pred hccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc--HHHHHHHHHHHHcCcccCCcHHHHHHH
Confidence 1111 1223567788888888899999999999999876542221 11245555544433 234555555
Q ss_pred HHHHHHhhcCCcchHHHHHcCcHHHHHHHHhhhc
Q 001733 538 FKALMQISSHHPSCKILVEAGIVQVMAEEMFIRI 571 (1019)
Q Consensus 538 ~~aL~~Ls~~~~~~~~l~~~G~v~~Lv~lL~~~~ 571 (1019)
...+-..+..+...+..+..+.++.+..+.....
T Consensus 177 ~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~~ 210 (298)
T PF12719_consen 177 SVFFPVYASSSPENQERLAEAFLPTLRTLSNAPD 210 (298)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCcc
Confidence 5556677777776678888888888877666543
No 222
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.50 E-value=0.13 Score=56.86 Aligned_cols=60 Identities=22% Similarity=0.493 Sum_probs=46.5
Q ss_pred ccccccCcccCCCc-----eecCCCccccHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCccCHhHHH
Q 001733 233 TFYCPLTKEIMDDP-----VTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVALKT 295 (1019)
Q Consensus 233 ~~~Cpi~~~~m~dP-----v~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~~~~l~pn~~Lr~ 295 (1019)
--+||||.+-..-| |++.|||-|--.||++|+.. .-...||.|.-.-....+.|-+++|.
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k---~~~~~cp~c~~katkr~i~~e~alR~ 68 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGK---KTKMQCPLCSGKATKRQIRPEYALRV 68 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhh---hhhhhCcccCChhHHHHHHHHHHHHH
Confidence 35899999988876 46799999999999999964 23467999977655556666666655
No 223
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.32 E-value=0.07 Score=55.45 Aligned_cols=56 Identities=16% Similarity=0.320 Sum_probs=45.6
Q ss_pred CccccccCcccCCCce----------ecCCCccccHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCccC
Q 001733 232 ETFYCPLTKEIMDDPV----------TIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTN 290 (1019)
Q Consensus 232 ~~~~Cpi~~~~m~dPv----------~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~~~~l~pn 290 (1019)
++-.|-+|++-+-+.| .++|+|.|---||.-|+-- |...+||-|++....+.+..|
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWciv---GKkqtCPYCKekVdl~rmfsn 288 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIV---GKKQTCPYCKEKVDLKRMFSN 288 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheee---cCCCCCchHHHHhhHhhhccC
Confidence 5678999998877766 6799999999999999987 467899999987665555555
No 224
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=90.32 E-value=4.1 Score=47.33 Aligned_cols=173 Identities=15% Similarity=0.137 Sum_probs=115.4
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHhccChhhhhhhhcccchHHHHHHhhhcCCC--ChHHHHHHHHHHHHhcCCCCchH
Q 001733 394 ISILIKLLSSSHRPVRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKFNWSI--DVFAAEIADQILRNLERNPDNIK 471 (1019)
Q Consensus 394 i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~~~~~~~i~~~~g~I~~LV~lL~~~~~--~~~~~~~A~~aL~nLs~~~~n~~ 471 (1019)
...+.+++.+++...+..|...|.++|.+....+.+.. ..++..|..+..++.. ..+.....+.++..|-.+.-.-+
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~-~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIR-CSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHh-cchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 44567888999999999999999999999988887765 7889999999975544 45566666666666643322222
Q ss_pred HHHhcCChHHHHHHhc--cCCHHHHHHHHHHHHHhccCcc-cccccccc-hHHHHHHHHhcCChHHHHHHHHHHHHhhcC
Q 001733 472 CMAENGLLEPLMHHLN--EGSEEIQMEMASYLGEIVLGHD-SKINVPGR-AASTLIRMVHSGNSLTRRIAFKALMQISSH 547 (1019)
Q Consensus 472 ~i~~~G~i~~Lv~lL~--~~~~~~~~~aa~~L~~La~~~~-~~~~i~~~-~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~ 547 (1019)
..+....|.....+.. .-+..+-..|+..|.++..+.. .+..+.+. -+..|++.+..++..++.+|...+-.|-..
T Consensus 164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~ 243 (713)
T KOG2999|consen 164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRK 243 (713)
T ss_pred eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhh
Confidence 2233333333333332 2234556678888888887655 55566666 589999999999999999988877777544
Q ss_pred Cc--chHHHHHcCcHHHHHHHH
Q 001733 548 HP--SCKILVEAGIVQVMAEEM 567 (1019)
Q Consensus 548 ~~--~~~~l~~~G~v~~Lv~lL 567 (1019)
.+ -|..+.+.-...++...+
T Consensus 244 a~~~~R~~~~~~l~~~~~R~ai 265 (713)
T KOG2999|consen 244 APDDKRFEMAKSLEQKQFRNAI 265 (713)
T ss_pred CChHHHHHHHHHHHHHHHHHHH
Confidence 33 255555544434443333
No 225
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.18 E-value=35 Score=42.87 Aligned_cols=154 Identities=15% Similarity=0.048 Sum_probs=91.4
Q ss_pred HHHHHHHHHhccChhhhhhhhcccchHHHHHHhhh------cCCCChHHHHHHHHHHHHhcC---CCCchHHHHhcCChH
Q 001733 410 HESLLLLLELSSTRSLCEKIGSIPGGILVLITFKF------NWSIDVFAAEIADQILRNLER---NPDNIKCMAENGLLE 480 (1019)
Q Consensus 410 ~~Aa~~L~~Ls~~~~~~~~i~~~~g~I~~LV~lL~------~~~~~~~~~~~A~~aL~nLs~---~~~n~~~i~~~G~i~ 480 (1019)
-+|..+|..+.. ...++.+ +|.++.++..+. ....++..+..|..++.+|+. .+.--+-..+.=.++
T Consensus 390 ~Aa~~~l~~~~~-KR~ke~l---~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~ 465 (1010)
T KOG1991|consen 390 TAALDFLTTLVS-KRGKETL---PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVN 465 (1010)
T ss_pred HHHHHHHHHHHH-hcchhhh---hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHH
Confidence 344455555433 3333333 788899999986 344566777778888888872 111111222322344
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhccCcccccccccchHHHHHHHHh-cCChHHHHHHHHHHHHhhcCCcchHHHHHcCc
Q 001733 481 PLMHHLNEGSEEIQMEMASYLGEIVLGHDSKINVPGRAASTLIRMVH-SGNSLTRRIAFKALMQISSHHPSCKILVEAGI 559 (1019)
Q Consensus 481 ~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~i~~~~i~~Lv~lL~-~~~~~~~~~A~~aL~~Ls~~~~~~~~l~~~G~ 559 (1019)
.+.-.+++...-++..|++++...+.-+-.-..+...++......|. +....++-.|+-||..+-++.+..+.-+.+.+
T Consensus 466 hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hv 545 (1010)
T KOG1991|consen 466 HVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHV 545 (1010)
T ss_pred HhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhh
Confidence 55555667777899999999999985222112222335555566666 55667888899999998887765444344444
Q ss_pred HHHHHHHH
Q 001733 560 VQVMAEEM 567 (1019)
Q Consensus 560 v~~Lv~lL 567 (1019)
.+.+-++|
T Consensus 546 p~~mq~lL 553 (1010)
T KOG1991|consen 546 PPIMQELL 553 (1010)
T ss_pred hHHHHHHH
Confidence 33333333
No 226
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=89.93 E-value=12 Score=43.01 Aligned_cols=93 Identities=24% Similarity=0.210 Sum_probs=64.7
Q ss_pred HHHHHHHhcC-CChhHHHHHHHHHHHhccChhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHH
Q 001733 394 ISILIKLLSS-SHRPVRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKC 472 (1019)
Q Consensus 394 i~~Lv~lL~~-~~~~~r~~Aa~~L~~Ls~~~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~ 472 (1019)
|..+++=|.+ ....+|..++.-|..-+.+++.+..+.. .|.+..+++.+....+++...-.++.+++-|+....+-..
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra-~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRA-HGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHH-cCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 4555555553 3457899999999999999999999965 8999999999964444544344444555555555555555
Q ss_pred HHhcCChHHHHHHhc
Q 001733 473 MAENGLLEPLMHHLN 487 (1019)
Q Consensus 473 i~~~G~i~~Lv~lL~ 487 (1019)
+-+.+....++.++.
T Consensus 102 ~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLK 116 (361)
T ss_pred hhchhHHHHHHHHhc
Confidence 556667777788777
No 227
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=89.76 E-value=7.4 Score=47.61 Aligned_cols=399 Identities=11% Similarity=0.082 Sum_probs=191.4
Q ss_pred HHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHh---cCCChhHHHHHHHHHHHhccChhhhhhhhcccchHHHHHHhhh
Q 001733 368 CAAMELLRQLVVEDDEGKEMIAETMDISILIKLL---SSSHRPVRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKF 444 (1019)
Q Consensus 368 ~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL---~~~~~~~r~~Aa~~L~~Ls~~~~~~~~i~~~~g~I~~LV~lL~ 444 (1019)
..++..|--|. ...+.-..+.+.|.=..++-+. +-.+....-.+...|..|..+......... .|||..|+.+=+
T Consensus 327 ~~~~q~l~~lg-ey~e~lpv~~~~g~~~~~~~~~~~~q~~d~~l~~~~~k~~~~l~~h~kfa~~fv~-~~gi~kll~vpr 404 (1516)
T KOG1832|consen 327 KYCIQCLEILG-EYVEVLPVLHEKGVDVCIVLLERTSQLDDSPLLPDVMKLICALAAHRKFAAMFVE-RRGILKLLAVPR 404 (1516)
T ss_pred HHHHHHHHHHH-hHHHHHHHHHHhCchhhhhhhhhhhccccccccHHHHHHHHHHHHhhHHHHHHHH-hhhhHHHhcCCC
Confidence 34555555554 2223334455656433333222 234455566777888888877776666654 788888777632
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCCchHHHHh------cCChHHHHHHhccCCHHHHHHHHHHHHHhccCccccccccc-c
Q 001733 445 NWSIDVFAAEIADQILRNLERNPDNIKCMAE------NGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDSKINVPG-R 517 (1019)
Q Consensus 445 ~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~------~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~i~~-~ 517 (1019)
..++..-...+|+.+..+.+...++.. ..+|..-+.+|.......+.+++..++..-.....-..+.. .
T Consensus 405 ----~s~~~~g~s~cly~~~~~q~~mervc~~p~~v~~~vv~~~~~l~~cs~~~~~~~~~~ff~~~f~frail~~fd~~d 480 (1516)
T KOG1832|consen 405 ----VSETFYGLSSCLYTIGSLQGIMERVCALPLVVIHQVVKLAIELLDCSQDQARKNSALFFAAAFVFRAILDAFDAQD 480 (1516)
T ss_pred ----chhhhhhHHHHHHHHhhhhhHHHHHhhccHHHHHHHHHHHHHHHhcchhhccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 122334445678888776665444332 22344445555544444444443332221111111112222 4
Q ss_pred hHHHHHHHHhcC------C-----h--------HHHHHHHHHHHH-----hhcCCcc-hHHHHHcCcHHHHHHHHhhhcc
Q 001733 518 AASTLIRMVHSG------N-----S--------LTRRIAFKALMQ-----ISSHHPS-CKILVEAGIVQVMAEEMFIRII 572 (1019)
Q Consensus 518 ~i~~Lv~lL~~~------~-----~--------~~~~~A~~aL~~-----Ls~~~~~-~~~l~~~G~v~~Lv~lL~~~~~ 572 (1019)
++..|+.+++.- + + ......+.+|.. |.-.-++ ++.-+..|.++..+.-+....
T Consensus 481 ~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~- 559 (1516)
T KOG1832|consen 481 SLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMAFHTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAY- 559 (1516)
T ss_pred HHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCC-
Confidence 677777776541 0 0 111222333322 1111111 222223344443333222111
Q ss_pred CCCCh----hHHHHHHHHHHHHHhcCC-----CcccccccccCcccchhhhHHHHHHHHcCC-------CCHHHHHHHHH
Q 001733 573 HNEPM----NSKEEAAAILANILESGL-----EHHSLQVNSHGHTMVSDYVVYNIIYMLKNS-------TPDELNVHLIR 636 (1019)
Q Consensus 573 ~~~~~----~~~~~A~~~L~~L~~~~~-----~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~-------~~~~v~~~a~~ 636 (1019)
.|. ...+...+-+..+..-.. .|+.. .-+..-+++..++.+.... +-.++-.+|+.
T Consensus 560 --~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~a------enflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~ 631 (1516)
T KOG1832|consen 560 --KPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAA------ENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALG 631 (1516)
T ss_pred --CcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHH------HHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHh
Confidence 111 222333333333332221 12111 2234456677777777652 22456678888
Q ss_pred HHHHHhCCCCchHHHHHHH---HHc-CChHHHHHhhcCC----CHHHHHHHHHHHHHhCcCCChhHHHHhhhcCCChhHh
Q 001733 637 ILQCLTKSPKPMATIVSVI---KET-EASYSLLEVINNP----HDELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENL 708 (1019)
Q Consensus 637 aL~~La~~~~~~~~i~~~i---~~~-g~i~~Lv~LL~~~----~~~vr~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~L 708 (1019)
+|..++.-|+....+.... .++ .|+..++..-... +++++..|+.++.|+.-..+. ..+..+
T Consensus 632 vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~AL~vIincVc~pp~----------~r~s~i 701 (1516)
T KOG1832|consen 632 VLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPALNVIINCVCPPPT----------TRPSTI 701 (1516)
T ss_pred heeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccCHHHHHHHHhhhheeecCCCC----------cchhhh
Confidence 8888887665422221111 011 2444444332222 679999999999888743321 112222
Q ss_pred hcccCCCCcChHHHHHH---HHHHhccCCCChhhHHHHHhCCChHHHHHHHHhhhccCCCccchhhhHHHHHHHHHHHHh
Q 001733 709 IQCPTETIHITEKQAVS---AKFLAKLPHQNLTLNLALSARNVVPTILQTINLIQRSGTRTSRYASAYLEGLIGILVRFT 785 (1019)
Q Consensus 709 V~lL~~~~~~~~~~~~A---~~~L~nL~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~lt 785 (1019)
+++-.++. .......+ -..|-+. -.+....+...++|..|++||+ .+.+- .+...+..-|+.+|..++
T Consensus 702 ~~v~S~~g-~~r~~l~~~~ks~~le~~---l~~mw~~Vr~ndGIkiLl~Ll~-~k~P~----t~aD~IRalAc~~L~GLa 772 (1516)
T KOG1832|consen 702 VAVGSQSG-DRRIFLGAGTKSAKLEQV---LRQMWEAVRGNDGIKILLKLLQ-YKNPP----TTADCIRALACRVLLGLA 772 (1516)
T ss_pred hhccccCC-CccccccCCCchHHHHHH---HHHHHHHHhcCccHHHHHHHHh-ccCCC----CcHHHHHHHHHHHHhccc
Confidence 22222221 00000000 0001110 1133455667789999999997 22221 135567777889999998
Q ss_pred cCCCchhHHHHHHhCCch
Q 001733 786 TTLYEPQILFLARTHNFT 803 (1019)
Q Consensus 786 ~~~~~~~~~~~~~~~g~i 803 (1019)
+ ++.+++++.+.-++
T Consensus 773 R---~~tVrQIltKLpLv 787 (1516)
T KOG1832|consen 773 R---DDTVRQILTKLPLV 787 (1516)
T ss_pred c---CcHHHHHHHhCccc
Confidence 7 89999998875554
No 228
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=89.65 E-value=84 Score=41.61 Aligned_cols=141 Identities=15% Similarity=0.123 Sum_probs=90.6
Q ss_pred CChHHHHHHhhcCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHhcCCChhHHHHHHHHHHHhcc-Chhhhhh
Q 001733 350 GVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSSHRPVRHESLLLLLELSS-TRSLCEK 428 (1019)
Q Consensus 350 g~i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~-~~~~~~~ 428 (1019)
+.+..++..|......+|.+|+++|..+...++.. +.....-..+-.-+...+..+|+.|+.++...-. .++..
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~v---L~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~-- 890 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPSV---LSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELI-- 890 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHh---hcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHH--
Confidence 34667778888888999999999999998655432 1122223334445556668999999999875433 22222
Q ss_pred hhcccchHHHHHHhhhc--CCCChHHHHHHHHHHHHhcCCCCchHHHHhcCChHHHHHHhc---cCCHHHHHHHHHHHHH
Q 001733 429 IGSIPGGILVLITFKFN--WSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLN---EGSEEIQMEMASYLGE 503 (1019)
Q Consensus 429 i~~~~g~I~~LV~lL~~--~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~lL~---~~~~~~~~~aa~~L~~ 503 (1019)
+.....+.+ ......+++.+...|+.+|....+-..+.+ ..+++|+ +....++..+..++.+
T Consensus 891 --------~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~-----~cakmlrRv~DEEg~I~kLv~etf~k 957 (1692)
T KOG1020|consen 891 --------FQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVD-----MCAKMLRRVNDEEGNIKKLVRETFLK 957 (1692)
T ss_pred --------HHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHH-----HHHHHHHHhccchhHHHHHHHHHHHH
Confidence 222222211 133467899999999999976665555443 4455554 3334488888889999
Q ss_pred hccCc
Q 001733 504 IVLGH 508 (1019)
Q Consensus 504 La~~~ 508 (1019)
+--.|
T Consensus 958 lWF~p 962 (1692)
T KOG1020|consen 958 LWFTP 962 (1692)
T ss_pred HhccC
Confidence 87644
No 229
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=89.26 E-value=0.43 Score=37.46 Aligned_cols=46 Identities=17% Similarity=0.329 Sum_probs=25.1
Q ss_pred ccccccCcccCCCceec-CCCcc--ccHHHHHHHHhhhccCCCCCCCCCCCC
Q 001733 233 TFYCPLTKEIMDDPVTI-ESGVT--YERNAITAWFEKFETSGDIFCPTTGKK 281 (1019)
Q Consensus 233 ~~~Cpi~~~~m~dPv~~-~~g~t--~~r~~I~~~~~~~~~~~~~~cP~~~~~ 281 (1019)
.+.||||...|+-||=- .|.|. ||-...-+...+ .+...||+|+++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~---~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQR---TPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHH---S---B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhc---cCCeECcCCcCc
Confidence 37899999999999954 77654 777554444443 245789999864
No 230
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=89.00 E-value=0.18 Score=55.14 Aligned_cols=49 Identities=16% Similarity=0.278 Sum_probs=42.0
Q ss_pred ccccCcccCCCceecCCCccccHHHHHHHHhhhccCCCCCCCCCCCCCCCCC
Q 001733 235 YCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRG 286 (1019)
Q Consensus 235 ~Cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~~~~ 286 (1019)
+|-||-|==+|--|=||||-.|-.|+..|..+ ++..+||+|+-.+.-++
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~s---d~gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDS---DEGQTCPFCRCEIKGTE 419 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhccc---CCCCCCCceeeEecccc
Confidence 69999999999888899999999999999987 24678999998765543
No 231
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=88.28 E-value=3.4 Score=42.54 Aligned_cols=120 Identities=18% Similarity=0.116 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHhhccCChhHHHHHH----------------hcCCHHHHHHHhcCC------ChhHHHHHHHHHHHhccC
Q 001733 365 NVRCAAMELLRQLVVEDDEGKEMIA----------------ETMDISILIKLLSSS------HRPVRHESLLLLLELSST 422 (1019)
Q Consensus 365 ~~~~~Al~~L~~La~~~~~~k~~I~----------------~~g~i~~Lv~lL~~~------~~~~r~~Aa~~L~~Ls~~ 422 (1019)
..-..++..|.|+++ .+.....+. +...+..|+..+..| ...-....+.+|.|+|..
T Consensus 10 ~~adl~~MLLsNlT~-~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~ 88 (192)
T PF04063_consen 10 PLADLACMLLSNLTR-SDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQL 88 (192)
T ss_pred chHHHHHHHHHHhcc-chHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCC
Confidence 344556777777774 444433222 223678888877652 234568889999999999
Q ss_pred hhhhhhhhcccch---HHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHHHhc---CChHHHHHHhc
Q 001733 423 RSLCEKIGSIPGG---ILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAEN---GLLEPLMHHLN 487 (1019)
Q Consensus 423 ~~~~~~i~~~~g~---I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~---G~i~~Lv~lL~ 487 (1019)
++.|+.+.....+ |..|+.... +.+..-++-++.+++|+|...+....+... +.+|.|+--|.
T Consensus 89 ~~gR~~~l~~~~~~~~l~kLl~ft~--~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 89 PEGRQFFLDPQRYDGPLQKLLPFTE--HKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred HHHHHHHhCchhhhhHHHHHHHHhc--cCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 9999998764444 444555453 337777888999999999888777666653 34444444333
No 232
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=88.26 E-value=2.3 Score=42.42 Aligned_cols=145 Identities=19% Similarity=0.181 Sum_probs=95.5
Q ss_pred HHHHHHHhcC--CChhHHHHHHHHHHHhccChhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCC-CCch
Q 001733 394 ISILIKLLSS--SHRPVRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERN-PDNI 470 (1019)
Q Consensus 394 i~~Lv~lL~~--~~~~~r~~Aa~~L~~Ls~~~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~-~~n~ 470 (1019)
++.++..|.. ...++|..|.-++..+- +..++.. ...+...+..+- ...+.+....+..+|..|-.. ++-.
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~---~~~~~~~i~~~~-~~~~~d~~i~~~~~l~~lfp~~~dv~ 78 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEF---KEKISDFIESLL-DEGEMDSLIIAFSALTALFPGPPDVG 78 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHH---HHHHHHHHHHHH-CCHHCCHHHHHHHHHHHHCTTTHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHH---HHHHHHHHHHHH-ccccchhHHHHHHHHHHHhCCCHHHH
Confidence 4445555543 55688888888888873 3333332 122333333322 122333566666777666533 3334
Q ss_pred HHHH-hcCChHHHHHHhc--cCCHHHHHHHHHHHHHhccCcccccccccchHHHHHHHHhc-CChH-HHHHHHHHHHHh
Q 001733 471 KCMA-ENGLLEPLMHHLN--EGSEEIQMEMASYLGEIVLGHDSKINVPGRAASTLIRMVHS-GNSL-TRRIAFKALMQI 544 (1019)
Q Consensus 471 ~~i~-~~G~i~~Lv~lL~--~~~~~~~~~aa~~L~~La~~~~~~~~i~~~~i~~Lv~lL~~-~~~~-~~~~A~~aL~~L 544 (1019)
..+. ..|.++.++.+.. ..+..++..++.+|..=|.+...|..|.+.+++.|-++++. .++. ++..|+-+|..|
T Consensus 79 ~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 79 SELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp HHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred HHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence 4444 5689999999998 77888999999999988889999999999999999999964 4455 788887777653
No 233
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=87.96 E-value=3.5 Score=41.15 Aligned_cols=148 Identities=16% Similarity=0.114 Sum_probs=95.1
Q ss_pred hHHHHHHhhc--CCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHhcCCChhHHHHHHHHHHHhcc-Chhhhhh
Q 001733 352 LPLLTKLLEY--KDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSSHRPVRHESLLLLLELSS-TRSLCEK 428 (1019)
Q Consensus 352 i~~Lv~lL~s--~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~-~~~~~~~ 428 (1019)
+..++..|.. ..+++|-.++-++..+- +..++... .-.-+.+-..+..++.+....+..+|..|-- .++....
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~-~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~ 80 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFK-EKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE 80 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHH-HHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHH-HHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence 4455555543 46677888877776662 33333321 1122333344455555667778888877765 4577888
Q ss_pred hhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHHHhcCChHHHHHHhc-cCCHH-HHHHHHHHHHHh
Q 001733 429 IGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLN-EGSEE-IQMEMASYLGEI 504 (1019)
Q Consensus 429 i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~lL~-~~~~~-~~~~aa~~L~~L 504 (1019)
+....|.++.++.+..+.+++...+..++++|..-|.+..-|..+ ...+++.|-+++. +.++. ++..|+-+|..|
T Consensus 81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I-~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFI-SKNYVSWLKELYKNSKDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCC-HHHCHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHH-HHHHHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence 887899999999999755677888888888887766654444444 4557889999986 44455 677787777653
No 234
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.80 E-value=38 Score=42.56 Aligned_cols=280 Identities=13% Similarity=0.115 Sum_probs=147.2
Q ss_pred chHHHHHHHHhc--------CChHHHHHHHHHHHHhhcCC---cchHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHH
Q 001733 517 RAASTLIRMVHS--------GNSLTRRIAFKALMQISSHH---PSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAA 585 (1019)
Q Consensus 517 ~~i~~Lv~lL~~--------~~~~~~~~A~~aL~~Ls~~~---~~~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~ 585 (1019)
+.++-+++++.+ .+++-++-|+.++.+|++-= ..-+-.++.=.+..+.-.+.++ -.-+|..|++
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~-----~g~Lrarac~ 484 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSP-----YGYLRARACW 484 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCc-----hhHHHHHHHH
Confidence 456777777762 34677888999999988321 1111222222233333323322 1378899999
Q ss_pred HHHHHHhcCCCcccccccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCch-HHHHHHHHHcCChHHH
Q 001733 586 ILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPM-ATIVSVIKETEASYSL 664 (1019)
Q Consensus 586 ~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~La~~~~~~-~~i~~~i~~~g~i~~L 664 (1019)
++..++.-.-.-. ..-..+.+.-...|.++.+-.++..|+-||..+-.+.... +.++..+. +.++.|
T Consensus 485 vl~~~~~~df~d~----------~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp--~~mq~l 552 (1010)
T KOG1991|consen 485 VLSQFSSIDFKDP----------NNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVP--PIMQEL 552 (1010)
T ss_pred HHHHHHhccCCCh----------HHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhh--HHHHHH
Confidence 9999885322111 0113344555556664377889999999999887766532 22222222 344455
Q ss_pred HHhhcCCCHHHHHHHH-HHHHHhCcCCChhHHHHhhhcCCChhHhhcccCC----CCcChHHHHHHHHHHhccCC-----
Q 001733 665 LEVINNPHDELAVAAI-KLLTTLSPYLGHTLVERLCKTRGQPENLIQCPTE----TIHITEKQAVSAKFLAKLPH----- 734 (1019)
Q Consensus 665 v~LL~~~~~~vr~~A~-~~L~~Ls~~~~~~~~~~l~~~~g~i~~LV~lL~~----~~~~~~~~~~A~~~L~nL~~----- 734 (1019)
+.+.+.-+.+...... ..++..+.... .++-.++ .......++++.. .+.+++...+|.|+|..+.+
T Consensus 553 L~L~ne~End~Lt~vme~iV~~fseEls-PfA~eL~--q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~ 629 (1010)
T KOG1991|consen 553 LKLSNEVENDDLTNVMEKIVCKFSEELS-PFAVELC--QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSL 629 (1010)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHHhhc-hhHHHHH--HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHH
Confidence 5555544433333333 23344442211 1222222 1233445566653 22245677788888877632
Q ss_pred -CChhhHHHHHhCCChHHHHHHHHhhhccCCCccchhhhHHHHHHHHHHHHhcCC--CchhHHHHHHhCCchHHHHHHHh
Q 001733 735 -QNLTLNLALSARNVVPTILQTINLIQRSGTRTSRYASAYLEGLIGILVRFTTTL--YEPQILFLARTHNFTSVFTELLM 811 (1019)
Q Consensus 735 -~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~lt~~~--~~~~~~~~~~~~g~i~~Lv~LL~ 811 (1019)
+.+++.+. .+...++.+-..|.+ ......+.+...+..+|... -.|.+. |+.+.+.+.++
T Consensus 630 e~~p~vl~~-le~~~l~vi~~iL~~----------~i~dfyeE~~ei~~~~t~~~~~Isp~mW------~ll~li~e~~~ 692 (1010)
T KOG1991|consen 630 ENHPEVLKQ-LEPIVLPVIGFILKN----------DITDFYEELLEIVSSLTFLSKEISPIMW------GLLELILEVFQ 692 (1010)
T ss_pred hccHHHHHH-HHHHHHHHHHHHHHH----------hhHHHHHHHHHHHhhhhhhhcccCHHHH------HHHHHHHHHHh
Confidence 22333222 233445555555542 23345566666666666532 133332 35566777777
Q ss_pred cCCcHHHHHHHHHHHhhhcccCC
Q 001733 812 KTSCDEVQKLAAIGLENLSSESI 834 (1019)
Q Consensus 812 ~~~~~~vk~~AA~aL~nLs~~~~ 834 (1019)
. ...+--....-+|.|+.+-+.
T Consensus 693 ~-~~~dyf~d~~~~l~N~vt~g~ 714 (1010)
T KOG1991|consen 693 D-DGIDYFTDMMPALHNYVTYGT 714 (1010)
T ss_pred h-hhHHHHHHHHHHHhhheeeCc
Confidence 7 445555667778887765553
No 235
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=87.80 E-value=0.74 Score=41.76 Aligned_cols=68 Identities=12% Similarity=0.153 Sum_probs=51.9
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhCcCCChhHHHHhhhcCCChhHhhcccCCCCcChHHHHHHHHHHhcc
Q 001733 659 EASYSLLEVINNPHDELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCPTETIHITEKQAVSAKFLAKL 732 (1019)
Q Consensus 659 g~i~~Lv~LL~~~~~~vr~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~LV~lL~~~~~~~~~~~~A~~~L~nL 732 (1019)
..+++++..+.+++..+|..|+.+|.+++.....++...+. .....|.+++.+.+ ..++.+| ..|-++
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~---~IF~~L~kl~~D~d--~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFN---EIFDALCKLSADPD--ENVRSAA-ELLDRL 94 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHcCCc--hhHHHHH-HHHHHH
Confidence 35678889999999999999999999999776677766665 46778888887776 4566554 555444
No 236
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=87.74 E-value=0.72 Score=36.02 Aligned_cols=41 Identities=17% Similarity=0.447 Sum_probs=31.3
Q ss_pred cccCcc--cCCCceecCCC-----ccccHHHHHHHHhhhccCCCCCCCCCC
Q 001733 236 CPLTKE--IMDDPVTIESG-----VTYERNAITAWFEKFETSGDIFCPTTG 279 (1019)
Q Consensus 236 Cpi~~~--~m~dPv~~~~g-----~t~~r~~I~~~~~~~~~~~~~~cP~~~ 279 (1019)
|-||.+ --.+|.+.||. +-+=+.|+.+|+.. ++..+||+|+
T Consensus 2 CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~---~~~~~C~iC~ 49 (49)
T smart00744 2 CRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINE---SGNKTCEICK 49 (49)
T ss_pred ccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHH---cCCCcCCCCC
Confidence 667775 44568888885 56889999999987 2467899985
No 237
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=87.69 E-value=85 Score=39.28 Aligned_cols=188 Identities=10% Similarity=0.127 Sum_probs=123.2
Q ss_pred cCCHHHHHHHHHHHHHhccCcccccccccchHHHHHHHHhcCChHHHHHHHHHHHHhhcCCcchHHHHHcCcHHHHHHHH
Q 001733 488 EGSEEIQMEMASYLGEIVLGHDSKINVPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEM 567 (1019)
Q Consensus 488 ~~~~~~~~~aa~~L~~La~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~~~~l~~~G~v~~Lv~lL 567 (1019)
+..+-++..++.+++--+. .......-.+.+..|.++....+.++.-.-..+|...++.++......+.-+.|..+.+.
T Consensus 502 ~~~~~~ki~a~~~~~~~~~-~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF 580 (1005)
T KOG2274|consen 502 DVPPPVKISAVRAFCGYCK-VKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLF 580 (1005)
T ss_pred CCCCchhHHHHHHHHhccC-ceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHH
Confidence 3455677777777766551 111111112457888888887778888888889999999888777777888888887765
Q ss_pred hhhccCCCChhHHHHHHHHHHHHHhcCCCcccccccccCcccchhhhHHHHHHHHcCCCC----HHHHHHHHHHHHHHhC
Q 001733 568 FIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTP----DELNVHLIRILQCLTK 643 (1019)
Q Consensus 568 ~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~----~~v~~~a~~aL~~La~ 643 (1019)
.... + .| .+...+-.++..++........ ..+..+|.|+..|.. +. +....-++..|..+-+
T Consensus 581 ~k~s-~-DP-~V~~~~qd~f~el~q~~~~~g~----------m~e~~iPslisil~~-~~~~~~~~l~~~aidvLttvvr 646 (1005)
T KOG2274|consen 581 LKYS-E-DP-QVASLAQDLFEELLQIAANYGP----------MQERLIPSLISVLQL-NADKAPAGLCAIAIDVLTTVLR 646 (1005)
T ss_pred HHhc-C-Cc-hHHHHHHHHHHHHHHHHHhhcc----------hHHHHHHHHHHHHcC-cccccCchhhHHHHHHHHHHHh
Confidence 5443 2 23 6667777777777765433322 236789999999987 44 6677778888886666
Q ss_pred CCCchHHHHHHHHHcCChHHHHH-hhcCCCHHHHHHHHHHHHHhCcCCChh
Q 001733 644 SPKPMATIVSVIKETEASYSLLE-VINNPHDELAVAAIKLLTTLSPYLGHT 693 (1019)
Q Consensus 644 ~~~~~~~i~~~i~~~g~i~~Lv~-LL~~~~~~vr~~A~~~L~~Ls~~~~~~ 693 (1019)
..++. +.+.+. +-+++++.+ .+++++.+.-.++..+|+.+-....+.
T Consensus 647 ~tp~p--L~~~l~-~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq 694 (1005)
T KOG2274|consen 647 NTPSP--LPNLLI-CYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQ 694 (1005)
T ss_pred cCCCC--ccHHHH-HHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHH
Confidence 55431 223222 345666664 456677788888888888876443333
No 238
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=87.63 E-value=37 Score=41.09 Aligned_cols=118 Identities=17% Similarity=0.132 Sum_probs=80.4
Q ss_pred cccchHHHHHHHHhcCChHHHHHHHHHHHHhhcCCcchHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhc
Q 001733 514 VPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILES 593 (1019)
Q Consensus 514 i~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~ 593 (1019)
++.+.+..|++-..+.+..++-.++..|..|......++.-+-.+....|..-+... . +.++..|.-+|..+-..
T Consensus 82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Dr----e-p~VRiqAv~aLsrlQ~d 156 (892)
T KOG2025|consen 82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDR----E-PNVRIQAVLALSRLQGD 156 (892)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhcc----C-chHHHHHHHHHHHHhcC
Confidence 444455666666667778899999999999987554444444455566665555543 2 37889999999998764
Q ss_pred CCCcccccccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCchHHHH
Q 001733 594 GLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPMATIV 652 (1019)
Q Consensus 594 ~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~La~~~~~~~~i~ 652 (1019)
+.+.+ -.++..+..++++.+++++|..| |.++.-+++..+-++
T Consensus 157 ~~dee-------------~~v~n~l~~liqnDpS~EVRRaa---LsnI~vdnsTlp~Iv 199 (892)
T KOG2025|consen 157 PKDEE-------------CPVVNLLKDLIQNDPSDEVRRAA---LSNISVDNSTLPCIV 199 (892)
T ss_pred CCCCc-------------ccHHHHHHHHHhcCCcHHHHHHH---HHhhccCcccchhHH
Confidence 43332 35778888999987889999874 566666665544333
No 239
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=87.13 E-value=49 Score=40.34 Aligned_cols=133 Identities=14% Similarity=0.113 Sum_probs=80.0
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhCc-CCChhHHHHhhhcCCChhHhhcccCCCCcChHHHHHHHHHHhccCCCCh
Q 001733 659 EASYSLLEVINNPHDELAVAAIKLLTTLSP-YLGHTLVERLCKTRGQPENLIQCPTETIHITEKQAVSAKFLAKLPHQNL 737 (1019)
Q Consensus 659 g~i~~Lv~LL~~~~~~vr~~A~~~L~~Ls~-~~~~~~~~~l~~~~g~i~~LV~lL~~~~~~~~~~~~A~~~L~nL~~~~~ 737 (1019)
++-+.+-+++.+.++-+|....-.+. |+. +.++ .++|..|+..--+.. +++++.+|+.+|+-+...++
T Consensus 519 ~Ad~lI~el~~dkdpilR~~Gm~t~a-lAy~GTgn---------nkair~lLh~aVsD~-nDDVrRaAVialGFVl~~dp 587 (929)
T KOG2062|consen 519 DADPLIKELLRDKDPILRYGGMYTLA-LAYVGTGN---------NKAIRRLLHVAVSDV-NDDVRRAAVIALGFVLFRDP 587 (929)
T ss_pred hhHHHHHHHhcCCchhhhhhhHHHHH-HHHhccCc---------hhhHHHhhccccccc-chHHHHHHHHHheeeEecCh
Confidence 33344447778888888877654432 111 1111 356666666633333 57888899888888877665
Q ss_pred hhHHHHHhCCChHHHHHHHHhhhccCCCccchhhhHHHHHHHHHHHHhcCCCchhHHHHHHhCCchHHHHHHHhcCCcHH
Q 001733 738 TLNLALSARNVVPTILQTINLIQRSGTRTSRYASAYLEGLIGILVRFTTTLYEPQILFLARTHNFTSVFTELLMKTSCDE 817 (1019)
Q Consensus 738 ~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~~lt~~~~~~~~~~~~~~~g~i~~Lv~LL~~~~~~~ 817 (1019)
+. ++.++++|.+. +...+.-+++-+|..++++..+.+.. .+|-.+.++ ....
T Consensus 588 ~~---------~~s~V~lLses---------~N~HVRyGaA~ALGIaCAGtG~~eAi---------~lLepl~~D-~~~f 639 (929)
T KOG2062|consen 588 EQ---------LPSTVSLLSES---------YNPHVRYGAAMALGIACAGTGLKEAI---------NLLEPLTSD-PVDF 639 (929)
T ss_pred hh---------chHHHHHHhhh---------cChhhhhhHHHHHhhhhcCCCcHHHH---------HHHhhhhcC-hHHH
Confidence 53 56677787653 34455566777777666654344332 233344455 6778
Q ss_pred HHHHHHHHHhhhc
Q 001733 818 VQKLAAIGLENLS 830 (1019)
Q Consensus 818 vk~~AA~aL~nLs 830 (1019)
||.-|..|++-+-
T Consensus 640 VRQgAlIa~amIm 652 (929)
T KOG2062|consen 640 VRQGALIALAMIM 652 (929)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877543
No 240
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=86.89 E-value=11 Score=46.18 Aligned_cols=198 Identities=9% Similarity=-0.007 Sum_probs=126.3
Q ss_pred ChhHHHHHHhcCCHHHHHHHhcCCChhHHHHHHHHHH-HhccChhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHH
Q 001733 381 DDEGKEMIAETMDISILIKLLSSSHRPVRHESLLLLL-ELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQI 459 (1019)
Q Consensus 381 ~~~~k~~I~~~g~i~~Lv~lL~~~~~~~r~~Aa~~L~-~Ls~~~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~a 459 (1019)
...-+...++.|+...|.++...+..+.+..+..+|. .++...+ .....++++-..+.+ ....-..-.++.+
T Consensus 493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~------~~~~v~~~~~s~~~~-d~~~~en~E~L~a 565 (748)
T KOG4151|consen 493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGE------RSYEVVKPLDSALHN-DEKGLENFEALEA 565 (748)
T ss_pred hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCC------chhhhhhhhcchhhh-hHHHHHHHHHHHH
Confidence 3344556678999999999999888888888888877 2221110 113456666666642 1222334567889
Q ss_pred HHHhcCCCC-chHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCccccc-cccc--chHHHHHHHHhcCChHHHH
Q 001733 460 LRNLERNPD-NIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDSKI-NVPG--RAASTLIRMVHSGNSLTRR 535 (1019)
Q Consensus 460 L~nLs~~~~-n~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~-~i~~--~~i~~Lv~lL~~~~~~~~~ 535 (1019)
|.||+..++ .|..+.+.-+++-+-.++.+.++..+..++..+.||..++..-. .+++ .+.+.....+.........
T Consensus 566 ltnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~l 645 (748)
T KOG4151|consen 566 LTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFEL 645 (748)
T ss_pred hhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhh
Confidence 999986554 56778877666666666777889999999999999998776443 3355 2567666666665566677
Q ss_pred HHHHHHHHhhcCCcchHH-HH-HcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHH
Q 001733 536 IAFKALMQISSHHPSCKI-LV-EAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANI 590 (1019)
Q Consensus 536 ~A~~aL~~Ls~~~~~~~~-l~-~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L 590 (1019)
.+++++..+.+..++.-. +. -.-....++.++.+.. ..+|....-...|+
T Consensus 646 A~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~-----~~~qhrgl~~~ln~ 697 (748)
T KOG4151|consen 646 AGAGALAAITSVVENHCSRILELLEWLEILVRAIQDED-----DEIQHRGLVIILNL 697 (748)
T ss_pred hccccccchhhcchhhhhhHHHhhcchHHHHHhhcCch-----hhhhhhhhhhhhhH
Confidence 777777767666655222 22 2444555656555432 35554444444443
No 241
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=86.82 E-value=29 Score=39.98 Aligned_cols=101 Identities=11% Similarity=0.059 Sum_probs=76.9
Q ss_pred HHh-cCCHHHHHHHhcCCC---hhHHHHHHHHHHHhccChhhhhhhhcccchHHHHHHhhh-cC-CCChHHHHHHHHHHH
Q 001733 388 IAE-TMDISILIKLLSSSH---RPVRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKF-NW-SIDVFAAEIADQILR 461 (1019)
Q Consensus 388 I~~-~g~i~~Lv~lL~~~~---~~~r~~Aa~~L~~Ls~~~~~~~~i~~~~g~I~~LV~lL~-~~-~~~~~~~~~A~~aL~ 461 (1019)
+.+ ...+..|..++++.. +.+-..|+.++...-.++...-.+....|.++.+++.+. .+ ..+.++...--.+|.
T Consensus 101 l~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~ 180 (379)
T PF06025_consen 101 LIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLS 180 (379)
T ss_pred ccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHh
Confidence 344 344556666676643 467788999999998888777766677999999998875 22 234566666678899
Q ss_pred HhcCCCCchHHHHhcCChHHHHHHhcc
Q 001733 462 NLERNPDNIKCMAENGLLEPLMHHLNE 488 (1019)
Q Consensus 462 nLs~~~~n~~~i~~~G~i~~Lv~lL~~ 488 (1019)
.||.|......+.+.+.++.+++.+.+
T Consensus 181 AicLN~~Gl~~~~~~~~l~~~f~if~s 207 (379)
T PF06025_consen 181 AICLNNRGLEKVKSSNPLDKLFEIFTS 207 (379)
T ss_pred HHhcCHHHHHHHHhcChHHHHHHHhCC
Confidence 999999999999999999999998865
No 242
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.79 E-value=27 Score=44.72 Aligned_cols=219 Identities=16% Similarity=0.199 Sum_probs=121.8
Q ss_pred hcCCHHHHHHHHHHHHhhccCChhHHHHHHh--cCCHHHHHHHhcCCChhHHHHHHHHHHHhcc--Chhhhhhhhcccch
Q 001733 360 EYKDRNVRCAAMELLRQLVVEDDEGKEMIAE--TMDISILIKLLSSSHRPVRHESLLLLLELSS--TRSLCEKIGSIPGG 435 (1019)
Q Consensus 360 ~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~--~g~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~--~~~~~~~i~~~~g~ 435 (1019)
++.+..+|.++-..|..++.. +.......+ ...-..+....++.+..+|..+..+|..|-. +.+.+..| ...
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i---~k~ 739 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI---PKL 739 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH---HHH
Confidence 345889999999999999743 332222211 0112233344444445566666666655543 23455544 335
Q ss_pred HHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHHHhcC------ChHHHHHHhccC--CHHHHHHHHHHHHHhcc-
Q 001733 436 ILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENG------LLEPLMHHLNEG--SEEIQMEMASYLGEIVL- 506 (1019)
Q Consensus 436 I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G------~i~~Lv~lL~~~--~~~~~~~aa~~L~~La~- 506 (1019)
|+-++=.+ ...+...++.|..+|..++. .....+.| .|..++..+..| .+.....+.. |..+..
T Consensus 740 I~EvIL~~--Ke~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~-Ivai~~i 812 (1176)
T KOG1248|consen 740 IPEVILSL--KEVNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASD-IVAITHI 812 (1176)
T ss_pred HHHHHHhc--ccccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHH-HHHHHHH
Confidence 55555444 35577889999999999873 11112222 556666666654 3333333333 222221
Q ss_pred CcccccccccchHHHHH----HHHhcCChHHHHHHHHHHHHhhcCCcc-hHHHHHcCcHHHHHHHHhhhccCCCChhHHH
Q 001733 507 GHDSKINVPGRAASTLI----RMVHSGNSLTRRIAFKALMQISSHHPS-CKILVEAGIVQVMAEEMFIRIIHNEPMNSKE 581 (1019)
Q Consensus 507 ~~~~~~~i~~~~i~~Lv----~lL~~~~~~~~~~A~~aL~~Ls~~~~~-~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~ 581 (1019)
..+.+..+....++.++ ..|.++++++...|++.+..++..-+. ...-...-.++.+..++.... ...+.
T Consensus 813 l~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k-----~~~r~ 887 (1176)
T KOG1248|consen 813 LQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHK-----IKVRK 887 (1176)
T ss_pred HHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhh-----HHHHH
Confidence 22333333333344444 456678999999999999999865543 222223446777777655432 35666
Q ss_pred HHHHHHHHHHhcC
Q 001733 582 EAAAILANILESG 594 (1019)
Q Consensus 582 ~A~~~L~~L~~~~ 594 (1019)
+...+|..|....
T Consensus 888 Kvr~LlekLirkf 900 (1176)
T KOG1248|consen 888 KVRLLLEKLIRKF 900 (1176)
T ss_pred HHHHHHHHHHHHh
Confidence 7666666666653
No 243
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=86.50 E-value=4.4 Score=43.47 Aligned_cols=98 Identities=14% Similarity=0.085 Sum_probs=76.4
Q ss_pred HHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHhc-CCChhHHHHHHHHHHHhccC-hhhhhhhhcccchHHHHHHhh
Q 001733 366 VRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLS-SSHRPVRHESLLLLLELSST-RSLCEKIGSIPGGILVLITFK 443 (1019)
Q Consensus 366 ~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL~-~~~~~~r~~Aa~~L~~Ls~~-~~~~~~i~~~~g~I~~LV~lL 443 (1019)
....|+.+|.-++-.++..|....+..++..++++|. ...+.++..++.+|..+-.+ +.|.. .+...+|+..++.++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r-~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQR-DFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHH-HHHHhCCHHHHHHHH
Confidence 4556777777777788999999999999999999994 45678888888888877665 45555 446699999999999
Q ss_pred hcCCCChHHHHHHHHHHHHhc
Q 001733 444 FNWSIDVFAAEIADQILRNLE 464 (1019)
Q Consensus 444 ~~~~~~~~~~~~A~~aL~nLs 464 (1019)
++.+.+.+++-.....|+-..
T Consensus 186 k~~~~~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFYL 206 (257)
T ss_pred ccccccHHHhHHHHHHHHHHH
Confidence 877777777777766665543
No 244
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=86.47 E-value=0.18 Score=59.66 Aligned_cols=49 Identities=12% Similarity=0.246 Sum_probs=41.5
Q ss_pred CccccccCcccCCCceec---CCCccccHHHHHHHHhhhccCCCCCCCCCCCCCCCC
Q 001733 232 ETFYCPLTKEIMDDPVTI---ESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSR 285 (1019)
Q Consensus 232 ~~~~Cpi~~~~m~dPv~~---~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~~~ 285 (1019)
.+-.||+|..-+.|-.+. .|+|.||..||..|... ..+||+|+..|...
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~-----aqTCPiDR~EF~~v 173 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC-----AQTCPVDRGEFGEV 173 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh-----cccCchhhhhhhee
Confidence 356899999999997765 89999999999999986 46899999877543
No 245
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.33 E-value=0.43 Score=51.52 Aligned_cols=47 Identities=15% Similarity=0.075 Sum_probs=40.2
Q ss_pred CccccccCcccCCCceecCCCccccHHHHHHHHhhhccCCCCCCCCCCCCCC
Q 001733 232 ETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLM 283 (1019)
Q Consensus 232 ~~~~Cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~ 283 (1019)
++-+||||.----..|..||||.-|..||.+++-. .+.|-+|+....
T Consensus 421 Ed~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN-----~k~CFfCktTv~ 467 (489)
T KOG4692|consen 421 EDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN-----CKRCFFCKTTVI 467 (489)
T ss_pred ccccCcceecccchhhccCCCCchHHHHHHHHHhc-----CCeeeEecceee
Confidence 68999999998888899999999999999999987 356888766443
No 246
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=85.84 E-value=14 Score=43.21 Aligned_cols=153 Identities=18% Similarity=0.146 Sum_probs=104.9
Q ss_pred hHHHHHHhhcCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHhcCCCh----hHHHHHHHHHHHhccChhhhh
Q 001733 352 LPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSSHR----PVRHESLLLLLELSSTRSLCE 427 (1019)
Q Consensus 352 i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL~~~~~----~~r~~Aa~~L~~Ls~~~~~~~ 427 (1019)
...+.+++.+++...|..|+..|..++ .+...-..++...++..|..+..+++. +.......++.+|-.+.-.-.
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls-~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLS-LDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhcc-ccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 345677788888888888999999998 566666666677889999999988754 344444555555433321111
Q ss_pred hhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCC-chHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 001733 428 KIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPD-NIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVL 506 (1019)
Q Consensus 428 ~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~-n~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~ 506 (1019)
.... ...|...+.+..-+..+..+...|+..|-++..++. -...+.+.--+..|+.+|...+..++..|...+..|-.
T Consensus 164 ~~~~-~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~ 242 (713)
T KOG2999|consen 164 ESVS-NDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR 242 (713)
T ss_pred eecc-cHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 1111 234444444443345567778889999999987666 45666677889999999999898888887777766654
No 247
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=85.62 E-value=4.9 Score=50.87 Aligned_cols=140 Identities=17% Similarity=0.118 Sum_probs=104.6
Q ss_pred ChHHHHHHhh----cCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHhc-CCChhHHHHHHHHHHHhccChhh
Q 001733 351 VLPLLTKLLE----YKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLS-SSHRPVRHESLLLLLELSSTRSL 425 (1019)
Q Consensus 351 ~i~~Lv~lL~----s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL~-~~~~~~r~~Aa~~L~~Ls~~~~~ 425 (1019)
..|.++...+ .++++.|..|.-+|+.+...+.+. -...+|.|+.++. ++++.+|.|++.++..|+..-.+
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~f-----ces~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEF-----CESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHH-----HHHHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 5677777774 358999999999999876444332 2345899999997 78899999999999998764322
Q ss_pred hhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhc
Q 001733 426 CEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIV 505 (1019)
Q Consensus 426 ~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La 505 (1019)
.. ...-+.|...| ...++.+++.|..+|.+|-.++..| -.|.++-+...|.+++++++.-|=.....|+
T Consensus 995 li-----e~~T~~Ly~rL--~D~~~~vRkta~lvlshLILndmiK----VKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 995 LI-----EPWTEHLYRRL--RDESPSVRKTALLVLSHLILNDMIK----VKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred cc-----chhhHHHHHHh--cCccHHHHHHHHHHHHHHHHhhhhH----hcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 11 22335566666 4678999999999999998765332 2499999999999999988877777777676
Q ss_pred c
Q 001733 506 L 506 (1019)
Q Consensus 506 ~ 506 (1019)
.
T Consensus 1064 ~ 1064 (1251)
T KOG0414|consen 1064 S 1064 (1251)
T ss_pred h
Confidence 5
No 248
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=85.44 E-value=0.6 Score=49.68 Aligned_cols=46 Identities=24% Similarity=0.352 Sum_probs=35.9
Q ss_pred cccCc-ccCCCceec----CCCccccHHHHHHHHhhhccCCCCCCCCCCCCCCCC
Q 001733 236 CPLTK-EIMDDPVTI----ESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSR 285 (1019)
Q Consensus 236 Cpi~~-~~m~dPv~~----~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~~~ 285 (1019)
||+|. +.+..|-+. +|||+.|-+|.-..|.. |...||.|+..|...
T Consensus 3 Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~----g~~~CpeC~~iLRk~ 53 (300)
T KOG3800|consen 3 CPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSL----GPAQCPECMVILRKN 53 (300)
T ss_pred CcccccceecCccceeeeccccchHHHHHHHHHHhc----CCCCCCcccchhhhc
Confidence 77775 344455332 99999999999999998 788999999877543
No 249
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=85.42 E-value=10 Score=42.20 Aligned_cols=111 Identities=21% Similarity=0.175 Sum_probs=75.4
Q ss_pred CChHHHH-HHhhcCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHhcCCChhHHHHHHHHHHHhccChh--hh
Q 001733 350 GVLPLLT-KLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSSHRPVRHESLLLLLELSSTRS--LC 426 (1019)
Q Consensus 350 g~i~~Lv-~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~~~--~~ 426 (1019)
+.+..|+ .-+.+.++.+|+.|+.+|...+-.+.+. + ...++.+...+..++..++..|+.+|+.+..... ..
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~----a-~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKEL----A-KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHH----H-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence 3344444 5678889999999999999887555422 1 2336778888888889999999999999976321 11
Q ss_pred hhhh------cccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCC
Q 001733 427 EKIG------SIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNP 467 (1019)
Q Consensus 427 ~~i~------~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~ 467 (1019)
.... .....+..+.+.+. +++++++..|+..+..|-.++
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~--~~~~~~~~~a~EGl~KLlL~~ 145 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLD--SENPELQAIAVEGLCKLLLSG 145 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHhcC
Confidence 1111 11345566666664 447788888888888776543
No 250
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.32 E-value=0.54 Score=51.65 Aligned_cols=51 Identities=22% Similarity=0.326 Sum_probs=35.3
Q ss_pred cccccCcccCCCc----eecCCCccccHHHHHHHHhhhccCCCCCCCCCCCCCCCCC
Q 001733 234 FYCPLTKEIMDDP----VTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRG 286 (1019)
Q Consensus 234 ~~Cpi~~~~m~dP----v~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~~~~ 286 (1019)
-.|.||-+.+-.- -|-.|||+|.--|+..||+-+- .+++||+|+-.++...
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~P--s~R~cpic~ik~~~r~ 59 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDP--SNRGCPICQIKLQERH 59 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCC--ccCCCCceeeccccee
Confidence 3588885544331 1235999999999999999742 2478999985555433
No 251
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.91 E-value=0.38 Score=55.95 Aligned_cols=36 Identities=14% Similarity=0.380 Sum_probs=29.8
Q ss_pred CCccccccCcccCC----CceecCCCccccHHHHHHHHhh
Q 001733 231 YETFYCPLTKEIMD----DPVTIESGVTYERNAITAWFEK 266 (1019)
Q Consensus 231 ~~~~~Cpi~~~~m~----dPv~~~~g~t~~r~~I~~~~~~ 266 (1019)
.+-++||||...|. .||.+.||||.||.|.+.-...
T Consensus 9 ~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~ 48 (861)
T KOG3161|consen 9 VLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA 48 (861)
T ss_pred HHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc
Confidence 35578999977764 4999999999999999986654
No 252
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=84.28 E-value=1 Score=38.08 Aligned_cols=44 Identities=20% Similarity=0.454 Sum_probs=34.2
Q ss_pred ccccCcccCCC----ceec-CCCccccHHHHHHHHhhhccCCCCCCCCCCCCCC
Q 001733 235 YCPLTKEIMDD----PVTI-ESGVTYERNAITAWFEKFETSGDIFCPTTGKKLM 283 (1019)
Q Consensus 235 ~Cpi~~~~m~d----Pv~~-~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~ 283 (1019)
+||-|+--|.- ||.. -|.|.|--.||.+|++. ...||.++++..
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-----k~~CPld~q~w~ 81 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-----KGVCPLDRQTWV 81 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-----CCCCCCCCceeE
Confidence 57777766632 6665 78899999999999998 357999998754
No 253
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=83.77 E-value=81 Score=38.40 Aligned_cols=115 Identities=20% Similarity=0.162 Sum_probs=80.7
Q ss_pred cchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCccccc
Q 001733 433 PGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDSKI 512 (1019)
Q Consensus 433 ~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~ 512 (1019)
.|.+..|++-. .+.+..++...+..|.-|+.+...+..-+-.+....|...|.+..+.++.+|+.+|..+-.++..-
T Consensus 84 ~~~f~hlLRg~--Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de- 160 (892)
T KOG2025|consen 84 AGTFYHLLRGT--ESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE- 160 (892)
T ss_pred HHHHHHHHhcc--cCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC-
Confidence 44555555544 456778899999999988875555555555677888888888889999999999999987533211
Q ss_pred cccc-chHHHHHHHHhc-CChHHHHHHHHHHHHhhcCCcchHHHHH
Q 001733 513 NVPG-RAASTLIRMVHS-GNSLTRRIAFKALMQISSHHPSCKILVE 556 (1019)
Q Consensus 513 ~i~~-~~i~~Lv~lL~~-~~~~~~~~A~~aL~~Ls~~~~~~~~l~~ 556 (1019)
+ .++..++.++++ ++++++..|+ .|++.++.....+++
T Consensus 161 ---e~~v~n~l~~liqnDpS~EVRRaaL---snI~vdnsTlp~Ive 200 (892)
T KOG2025|consen 161 ---ECPVVNLLKDLIQNDPSDEVRRAAL---SNISVDNSTLPCIVE 200 (892)
T ss_pred ---cccHHHHHHHHHhcCCcHHHHHHHH---HhhccCcccchhHHH
Confidence 1 256777888876 5788887765 566666655555544
No 254
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.75 E-value=0.5 Score=51.96 Aligned_cols=50 Identities=28% Similarity=0.402 Sum_probs=43.2
Q ss_pred ccccccCcccCCC---ceecCCCccccHHHHHHHHhhhccCCCCCCCCCCCCCCCCC
Q 001733 233 TFYCPLTKEIMDD---PVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRG 286 (1019)
Q Consensus 233 ~~~Cpi~~~~m~d---Pv~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~~~~ 286 (1019)
.+.|.|+|+.|.| |++.|+|++|-..+|+.|-..+ +-.||.++..+....
T Consensus 330 ~Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~----~i~dP~~~k~f~~~~ 382 (389)
T KOG0396|consen 330 RLVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDD----GIGDPRTKKVFRYSE 382 (389)
T ss_pred HHHhhccccccCCCCCcccccCceeehhHHHHhhcccC----CCcCCCCCccccHHH
Confidence 5789999999998 9999999999999999998772 378999988776543
No 255
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.65 E-value=0.83 Score=50.99 Aligned_cols=52 Identities=13% Similarity=0.229 Sum_probs=41.2
Q ss_pred CCccccccCcccCCCce-----e---cCCCccccHHHHHHHHhhhc--cCCCCCCCCCCCCC
Q 001733 231 YETFYCPLTKEIMDDPV-----T---IESGVTYERNAITAWFEKFE--TSGDIFCPTTGKKL 282 (1019)
Q Consensus 231 ~~~~~Cpi~~~~m~dPv-----~---~~~g~t~~r~~I~~~~~~~~--~~~~~~cP~~~~~l 282 (1019)
-.++.|-||.+.-.+++ . .+|-|+||-.||.+|-...+ ..-.+.||+|+...
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 56899999999999998 3 46999999999999985421 01147899999864
No 256
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=82.37 E-value=64 Score=36.98 Aligned_cols=205 Identities=15% Similarity=0.109 Sum_probs=112.7
Q ss_pred hHHHHHHhh-cCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHhcC-CChhHHHHHH-HHHHHhccChhhhhh
Q 001733 352 LPLLTKLLE-YKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSS-SHRPVRHESL-LLLLELSSTRSLCEK 428 (1019)
Q Consensus 352 i~~Lv~lL~-s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL~~-~~~~~r~~Aa-~~L~~Ls~~~~~~~~ 428 (1019)
|..++.-|+ +....+|+.++-.|+.-+ .++..|..+...|.+..+++.+.. ++...-..++ .+++-++.+..+-..
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~-~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKC-ADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHh-CCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 455555555 345678888888888877 788999999999999999999944 3332333343 444444443322222
Q ss_pred hhcccchHHHHHHhhh--cC---CCC-------------------------------------hHHHHHHHHHHHHhc--
Q 001733 429 IGSIPGGILVLITFKF--NW---SID-------------------------------------VFAAEIADQILRNLE-- 464 (1019)
Q Consensus 429 i~~~~g~I~~LV~lL~--~~---~~~-------------------------------------~~~~~~A~~aL~nLs-- 464 (1019)
....+.+..++.++. .. ..+ ...+.-|..+|..++
T Consensus 102 -~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~l~~~ 180 (361)
T PF07814_consen 102 -LLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALESLVRS 180 (361)
T ss_pred -hhchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHHHHHHHHH
Confidence 122444555455553 00 000 111222333444442
Q ss_pred ------C-------CCCchHHHHhcCChHHHHHHhcc----C-------C-----HHHHHHHHHHHHHhcc-Cccccccc
Q 001733 465 ------R-------NPDNIKCMAENGLLEPLMHHLNE----G-------S-----EEIQMEMASYLGEIVL-GHDSKINV 514 (1019)
Q Consensus 465 ------~-------~~~n~~~i~~~G~i~~Lv~lL~~----~-------~-----~~~~~~aa~~L~~La~-~~~~~~~i 514 (1019)
. .+--|..+.+.|++..+++.+.+ . . -.....+..+|.+.+. +.++...+
T Consensus 181 ~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~nq~~l 260 (361)
T PF07814_consen 181 LREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEENQSYL 260 (361)
T ss_pred HhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccchHHH
Confidence 0 01124555667889999998852 1 0 1233457777777765 45555554
Q ss_pred cc---chHHHHH-HHHhc---CChHHHHHHHHHHHHhhcCCcc-hHHHHHcC
Q 001733 515 PG---RAASTLI-RMVHS---GNSLTRRIAFKALMQISSHHPS-CKILVEAG 558 (1019)
Q Consensus 515 ~~---~~i~~Lv-~lL~~---~~~~~~~~A~~aL~~Ls~~~~~-~~~l~~~G 558 (1019)
.. +.++.+. .++.. ........++++|.||+.+.+. +..+...+
T Consensus 261 ~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~ 312 (361)
T PF07814_consen 261 LSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPK 312 (361)
T ss_pred HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhH
Confidence 33 2222222 22222 2344567899999999987743 44454433
No 257
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=82.35 E-value=64 Score=40.05 Aligned_cols=128 Identities=13% Similarity=0.140 Sum_probs=75.9
Q ss_pred HHhhhcCCChhHhhcccCCCCc------ChHHHHHHHHHHhccCCCChhhHHHHHhC--------CChHHHHHHHHhhhc
Q 001733 696 ERLCKTRGQPENLIQCPTETIH------ITEKQAVSAKFLAKLPHQNLTLNLALSAR--------NVVPTILQTINLIQR 761 (1019)
Q Consensus 696 ~~l~~~~g~i~~LV~lL~~~~~------~~~~~~~A~~~L~nL~~~~~~~~~~l~~~--------g~l~~Lv~lL~~~~~ 761 (1019)
+.+.+. +++..++.+...+.. -.+....|+++|+.+.. -+.++..|.++ .++..|+..-
T Consensus 595 enflkl-s~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~-iP~iq~~La~~~~~n~~aydGiaIiL~~a----- 667 (1516)
T KOG1832|consen 595 ENFLKL-SGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTS-IPDIQKALAHATLSNNRAYDGIAIILDAA----- 667 (1516)
T ss_pred HHHHHh-HHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEe-cchHHHHHHHHHhhcccccCceEEEeecc-----
Confidence 344443 556666665554331 13556678888877765 34444444332 1222222221
Q ss_pred cCCCccchhhhHHHHHHHHHHHHhcCCCchh-----------------------------------HHHHHHhCCchHHH
Q 001733 762 SGTRTSRYASAYLEGLIGILVRFTTTLYEPQ-----------------------------------ILFLARTHNFTSVF 806 (1019)
Q Consensus 762 ~~~~~~~~~~~~~e~a~~aL~~lt~~~~~~~-----------------------------------~~~~~~~~g~i~~L 806 (1019)
..+..-+...++..|++++.++.++. |+ .++.++..++|.+|
T Consensus 668 -~g~~~i~Dpei~~~AL~vIincVc~p--p~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiL 744 (1516)
T KOG1832|consen 668 -NGSNSIVDPEIIQPALNVIINCVCPP--PTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKIL 744 (1516)
T ss_pred -cccccccCHHHHHHHHhhhheeecCC--CCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHH
Confidence 11122335667777777777766542 21 44556778999999
Q ss_pred HHHHhcC----CcHHHHHHHHHHHhhhcccC
Q 001733 807 TELLMKT----SCDEVQKLAAIGLENLSSES 833 (1019)
Q Consensus 807 v~LL~~~----~~~~vk~~AA~aL~nLs~~~ 833 (1019)
++||+-. ..+-+|..|+.+|.-|+...
T Consensus 745 l~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~ 775 (1516)
T KOG1832|consen 745 LKLLQYKNPPTTADCIRALACRVLLGLARDD 775 (1516)
T ss_pred HHHHhccCCCCcHHHHHHHHHHHHhccccCc
Confidence 9999862 23579999999999888766
No 258
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=82.30 E-value=2.2 Score=48.60 Aligned_cols=177 Identities=16% Similarity=0.088 Sum_probs=108.7
Q ss_pred HHHHHHHHHHhhccCChhHHHH-HHhcCCHHHHHHHhcCCChhHHHHHHHHHHHhccC-----hh---hhhhhhcccchH
Q 001733 366 VRCAAMELLRQLVVEDDEGKEM-IAETMDISILIKLLSSSHRPVRHESLLLLLELSST-----RS---LCEKIGSIPGGI 436 (1019)
Q Consensus 366 ~~~~Al~~L~~La~~~~~~k~~-I~~~g~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~-----~~---~~~~i~~~~g~I 436 (1019)
++..|+.++..+. -++..|.. +.-..+-..+...|.+..-..|+.|++++.+++.. +. ..+.+. .--|
T Consensus 407 v~~aA~Ra~~VyV-LHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~s--g~ll 483 (728)
T KOG4535|consen 407 VKAAASRALGVYV-LHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFS--GLLL 483 (728)
T ss_pred HHHHHHhhceeEE-eccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHH--HHHH
Confidence 4556666666655 34444333 33355667777888777778999999999999641 11 222221 1123
Q ss_pred HHHHHhhh-cCCCChHHHHHHHHHHHHhcCCCC------chHHHHhcCChHHHHHH-hccCCHHHHHHHHHHHHHhccCc
Q 001733 437 LVLITFKF-NWSIDVFAAEIADQILRNLERNPD------NIKCMAENGLLEPLMHH-LNEGSEEIQMEMASYLGEIVLGH 508 (1019)
Q Consensus 437 ~~LV~lL~-~~~~~~~~~~~A~~aL~nLs~~~~------n~~~i~~~G~i~~Lv~l-L~~~~~~~~~~aa~~L~~La~~~ 508 (1019)
..++..-. ...++..+..+|..+|.|+...-+ ++.. ..|.+..++.. +..+.-.++.+++-++.||-.++
T Consensus 484 ~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~--~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~ 561 (728)
T KOG4535|consen 484 LKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEI--IEESIQALISTVLTEAAMKVRWNACYAMGNLFKNP 561 (728)
T ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHH--HHHHHHhcccceecccccccchHHHHHHHHhhcCc
Confidence 33333321 123455778899999999974221 2111 12222222222 23456789999999999999988
Q ss_pred cccccccc--c-hHHHHHHHHhc-CChHHHHHHHHHHHHhhcC
Q 001733 509 DSKINVPG--R-AASTLIRMVHS-GNSLTRRIAFKALMQISSH 547 (1019)
Q Consensus 509 ~~~~~i~~--~-~i~~Lv~lL~~-~~~~~~~~A~~aL~~Ls~~ 547 (1019)
..+-.=.. + ..+.|..++.+ .|-+++.+|+++|..-...
T Consensus 562 a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~r 604 (728)
T KOG4535|consen 562 ALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKR 604 (728)
T ss_pred cccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCc
Confidence 76543333 2 57999998876 4678899999998766543
No 259
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=82.09 E-value=1.5e+02 Score=37.29 Aligned_cols=222 Identities=10% Similarity=0.051 Sum_probs=143.1
Q ss_pred cCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHhcC-CChhHHHHHHHHHHHhccChhhhhhhhcccchHHHH
Q 001733 361 YKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSS-SHRPVRHESLLLLLELSSTRSLCEKIGSIPGGILVL 439 (1019)
Q Consensus 361 s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL~~-~~~~~r~~Aa~~L~~Ls~~~~~~~~i~~~~g~I~~L 439 (1019)
+..+...-.|..++...++....+...+ .-.+...+..+.- ..+.++..|+.++...+...-.. .-.++.+..|
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~--~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~---~~~p~ild~L 535 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINPQLL--QHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLL---SLQPMILDGL 535 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccchhHH--HHHHHHHHHhhccCCCCchhHHHHHHHHhccCceecc---ccchHHHHHH
Confidence 3456665577777777664333333322 1123444555543 33467777888777776322111 1237778888
Q ss_pred HHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHHHhcCChHHHHHHhc--cCCHHHHHHHHHHHHHhccCcccccccccc
Q 001733 440 ITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLN--EGSEEIQMEMASYLGEIVLGHDSKINVPGR 517 (1019)
Q Consensus 440 V~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~lL~--~~~~~~~~~aa~~L~~La~~~~~~~~i~~~ 517 (1019)
..+.. ..+.++...-.++|...+..+.......++-..|.++.+.. +.+|.+...+-.++..|+....+..-+.+.
T Consensus 536 ~qlas--~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~ 613 (1005)
T KOG2274|consen 536 LQLAS--KSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQER 613 (1005)
T ss_pred HHHcc--cccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHHH
Confidence 88874 33456777778889988888777777777778888777754 566777777777888888766666666666
Q ss_pred hHHHHHHHHhcCC----hHHHHHHHHHHHHhhcCCcc-hHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHh
Q 001733 518 AASTLIRMVHSGN----SLTRRIAFKALMQISSHHPS-CKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILE 592 (1019)
Q Consensus 518 ~i~~Lv~lL~~~~----~~~~~~A~~aL~~Ls~~~~~-~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~ 592 (1019)
.+|.|+..|.... +....-|+.+|-.+-++.++ -....-.-+.|++.+..-..+ ....-..+-++|+.+..
T Consensus 614 ~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsd----D~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 614 LIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSD----DHETLQNATECLRALIS 689 (1005)
T ss_pred HHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecC----ChHHHHhHHHHHHHHHh
Confidence 7999999998765 55667788888877766554 222233446777777664322 23666778888887766
Q ss_pred c
Q 001733 593 S 593 (1019)
Q Consensus 593 ~ 593 (1019)
.
T Consensus 690 ~ 690 (1005)
T KOG2274|consen 690 V 690 (1005)
T ss_pred c
Confidence 5
No 260
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=82.08 E-value=75 Score=36.13 Aligned_cols=106 Identities=17% Similarity=0.009 Sum_probs=63.2
Q ss_pred ChhHHHHHHHHHHHhccChhhhhhhhcccchHHHHHHhhh---cCCCChHHHHHHHHHHHHhc-CCCCchH-HHHhcCCh
Q 001733 405 HRPVRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKF---NWSIDVFAAEIADQILRNLE-RNPDNIK-CMAENGLL 479 (1019)
Q Consensus 405 ~~~~r~~Aa~~L~~Ls~~~~~~~~i~~~~g~I~~LV~lL~---~~~~~~~~~~~A~~aL~nLs-~~~~n~~-~i~~~G~i 479 (1019)
+..+-..|..+|.|+..+....+...-.......+.+.+. ..+-.......=...|+-|. ...+.|. .+++.+|+
T Consensus 110 d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl 189 (532)
T KOG4464|consen 110 DMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGL 189 (532)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 3467788899999998876655555443444444444432 11111223344456666664 3445554 45678999
Q ss_pred HHHHHHhccC---------CH------HHHHHHHHHHHHhccCccc
Q 001733 480 EPLMHHLNEG---------SE------EIQMEMASYLGEIVLGHDS 510 (1019)
Q Consensus 480 ~~Lv~lL~~~---------~~------~~~~~aa~~L~~La~~~~~ 510 (1019)
+.+.++|.+. ++ +...+++.+++|+..+...
T Consensus 190 ~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~~k 235 (532)
T KOG4464|consen 190 ELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDSDK 235 (532)
T ss_pred HHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeecccc
Confidence 9999998741 11 3445677788888875443
No 261
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=82.04 E-value=0.65 Score=39.35 Aligned_cols=51 Identities=20% Similarity=0.375 Sum_probs=24.3
Q ss_pred ccccccCcccCC-C---ceec----CCCccccHHHHHHHHhhhccCC---C---CCCCCCCCCCC
Q 001733 233 TFYCPLTKEIMD-D---PVTI----ESGVTYERNAITAWFEKFETSG---D---IFCPTTGKKLM 283 (1019)
Q Consensus 233 ~~~Cpi~~~~m~-d---Pv~~----~~g~t~~r~~I~~~~~~~~~~~---~---~~cP~~~~~l~ 283 (1019)
+..|+||....- + |+++ .||++|=+.|+.+||.....+. . .+||.|+.+++
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 467999998765 3 6665 5789999999999998533111 1 25999988764
No 262
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=81.91 E-value=18 Score=37.41 Aligned_cols=147 Identities=14% Similarity=0.096 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHhccChhhhhhhhcc--cchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCC--chHHHHhcCChHHHH
Q 001733 408 VRHESLLLLLELSSTRSLCEKIGSI--PGGILVLITFKFNWSIDVFAAEIADQILRNLERNPD--NIKCMAENGLLEPLM 483 (1019)
Q Consensus 408 ~r~~Aa~~L~~Ls~~~~~~~~i~~~--~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~--n~~~i~~~G~i~~Lv 483 (1019)
-..+|..+|.-++.+++.+...... +=.+-+.....++.+.-.-.+-.+++++..|..+++ ....+....+||.++
T Consensus 116 RvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL 195 (315)
T COG5209 116 RVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL 195 (315)
T ss_pred HHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence 3467788888888888877765421 112222233333333334456678899999987765 345666779999999
Q ss_pred HHhccCCHHHHHHHHHHHHHhccCccccccccc-----chH----HHHH-HHHhcCChHHHHHHHHHHHHhhcCCcchHH
Q 001733 484 HHLNEGSEEIQMEMASYLGEIVLGHDSKINVPG-----RAA----STLI-RMVHSGNSLTRRIAFKALMQISSHHPSCKI 553 (1019)
Q Consensus 484 ~lL~~~~~~~~~~aa~~L~~La~~~~~~~~i~~-----~~i----~~Lv-~lL~~~~~~~~~~A~~aL~~Ls~~~~~~~~ 553 (1019)
+.+..|++-.+.-++.++..+-.++.+-..+-+ .++ ..++ +++..++.+..+.++++-..||.++..|..
T Consensus 196 rIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~l 275 (315)
T COG5209 196 RIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARAL 275 (315)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHH
Confidence 999999999999999999998888776655532 133 3333 355567888999999999999988776655
Q ss_pred H
Q 001733 554 L 554 (1019)
Q Consensus 554 l 554 (1019)
+
T Consensus 276 L 276 (315)
T COG5209 276 L 276 (315)
T ss_pred H
Confidence 4
No 263
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=81.85 E-value=49 Score=36.04 Aligned_cols=187 Identities=19% Similarity=0.175 Sum_probs=109.2
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHhccChhhhhhhhcccch-HHHHHHhhhcC--CCChHHHHHHHHHHHHhcCCCCchH
Q 001733 395 SILIKLLSSSHRPVRHESLLLLLELSSTRSLCEKIGSIPGG-ILVLITFKFNW--SIDVFAAEIADQILRNLERNPDNIK 471 (1019)
Q Consensus 395 ~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~~~~~~~i~~~~g~-I~~LV~lL~~~--~~~~~~~~~A~~aL~nLs~~~~n~~ 471 (1019)
..+..++.+=..+.+--+..+++-+..++..-..+....++ ...+..++... ...+..+-.++++|.|+-.++..+.
T Consensus 66 ~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~ 145 (268)
T PF08324_consen 66 ILLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQ 145 (268)
T ss_dssp HHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHH
T ss_pred HHHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHH
Confidence 33444444433444566666666666666555555443333 44444444322 2456677888999999999988888
Q ss_pred HHHhc-C-ChHHHHHHhccC----CHHHHHHHHHHHHHhccC-ccccc--ccccchHHHHHHHHhc--CChHHHHHHHHH
Q 001733 472 CMAEN-G-LLEPLMHHLNEG----SEEIQMEMASYLGEIVLG-HDSKI--NVPGRAASTLIRMVHS--GNSLTRRIAFKA 540 (1019)
Q Consensus 472 ~i~~~-G-~i~~Lv~lL~~~----~~~~~~~aa~~L~~La~~-~~~~~--~i~~~~i~~Lv~lL~~--~~~~~~~~A~~a 540 (1019)
.+.+. + .+...+..+... +..++..+++++.|++.. ...+. ...-..+..+++.+.. .+++..-.++-+
T Consensus 146 ~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvA 225 (268)
T PF08324_consen 146 LLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVA 225 (268)
T ss_dssp HHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHH
T ss_pred HHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHH
Confidence 87765 3 444444444444 678899999999999862 22221 1111235566664333 478888899999
Q ss_pred HHHhhcCCcchHHHHH-cCcHHHHHHHHhhhccCCCChhHHHHHHH
Q 001733 541 LMQISSHHPSCKILVE-AGIVQVMAEEMFIRIIHNEPMNSKEEAAA 585 (1019)
Q Consensus 541 L~~Ls~~~~~~~~l~~-~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~ 585 (1019)
|++|...+.....+.+ .|+-..+...-. .. ...++++.+..
T Consensus 226 lGtL~~~~~~~~~~~~~l~~~~~~~~~~~-~~---~e~ri~~v~~e 267 (268)
T PF08324_consen 226 LGTLLSSSDSAKQLAKSLDVKSVLSKKAN-KS---KEPRIKEVAAE 267 (268)
T ss_dssp HHHHHCCSHHHHHHCCCCTHHHHHHHHHH-HT---TSHHHHHHHHH
T ss_pred HHHHhccChhHHHHHHHcChHHHHHHHHh-cc---cchHHHHHhcc
Confidence 9999977666555554 454444433222 22 12466665543
No 264
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.60 E-value=44 Score=42.91 Aligned_cols=240 Identities=16% Similarity=0.158 Sum_probs=129.3
Q ss_pred cchHHHHHHhhh--cCCCChHHHHHHHHHHHHhcCCCCchHHHHhc--CChHHHHHHhccCCHHHHHHHHHHHHHhcc-C
Q 001733 433 PGGILVLITFKF--NWSIDVFAAEIADQILRNLERNPDNIKCMAEN--GLLEPLMHHLNEGSEEIQMEMASYLGEIVL-G 507 (1019)
Q Consensus 433 ~g~I~~LV~lL~--~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~--G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~-~ 507 (1019)
.+.+..+.++.. ..+.++.+++.+-..|..|+..+.......+. -....|.+-+++-+...+.....+|..|-. .
T Consensus 649 e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~ 728 (1176)
T KOG1248|consen 649 ESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLL 728 (1176)
T ss_pred chhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhc
Confidence 344444443321 23457788999999999998775443333221 122334444444455566666666666554 2
Q ss_pred c-ccccccccchHHHHHHHHhcCChHHHHHHHHHHHHhhcCCcchHHHHHcC------cHHHHHHHHhhhccCCCChhHH
Q 001733 508 H-DSKINVPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAG------IVQVMAEEMFIRIIHNEPMNSK 580 (1019)
Q Consensus 508 ~-~~~~~i~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~~~~l~~~G------~v~~Lv~lL~~~~~~~~~~~~~ 580 (1019)
+ +....+. ..||-++-.++..+...++.|..+|..++. .....+.| .+...+..+...-.+ +...
T Consensus 729 ~~e~~~~i~-k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~g---d~~~ 800 (1176)
T KOG1248|consen 729 SAEHCDLIP-KLIPEVILSLKEVNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVG---DSTR 800 (1176)
T ss_pred cHHHHHHHH-HHHHHHHHhcccccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcc---cHHH
Confidence 2 2222222 234444444477788899999999999984 22223333 555555555543211 1222
Q ss_pred HHHHH--HHHHHHhcCCCcccccccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHc
Q 001733 581 EEAAA--ILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKET 658 (1019)
Q Consensus 581 ~~A~~--~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~ 658 (1019)
-.|.. ++..+..... ++ +..-.-.+++..+..+|.. .++++...|++.+..++..-+. .... -...
T Consensus 801 ~~as~Ivai~~il~e~~---~~-----ld~~~l~~li~~V~~~L~s-~sreI~kaAI~fikvlv~~~pe--~~l~-~~~~ 868 (1176)
T KOG1248|consen 801 VVASDIVAITHILQEFK---NI-----LDDETLEKLISMVCLYLAS-NSREIAKAAIGFIKVLVYKFPE--ECLS-PHLE 868 (1176)
T ss_pred HHHHHHHHHHHHHHHHh---cc-----ccHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHcCCH--HHHh-hhHH
Confidence 23332 1222222211 11 0011123444555555666 8999999999999998875431 1111 0111
Q ss_pred CChHHHHHhhcCCCHHHHHHHHHHHHHhCcCCCh
Q 001733 659 EASYSLLEVINNPHDELAVAAIKLLTTLSPYLGH 692 (1019)
Q Consensus 659 g~i~~Lv~LL~~~~~~vr~~A~~~L~~Ls~~~~~ 692 (1019)
..++.+..+++.....+|...-.+|-.|.+..+-
T Consensus 869 ~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~ 902 (1176)
T KOG1248|consen 869 ELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGA 902 (1176)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCH
Confidence 2456666776666778888877777777654443
No 265
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=81.55 E-value=46 Score=38.49 Aligned_cols=145 Identities=10% Similarity=0.173 Sum_probs=92.1
Q ss_pred hHHHHHHHHhc-CChHHHHHHHHHHHHhhcCCcchHHHHH--cCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcC
Q 001733 518 AASTLIRMVHS-GNSLTRRIAFKALMQISSHHPSCKILVE--AGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESG 594 (1019)
Q Consensus 518 ~i~~Lv~lL~~-~~~~~~~~A~~aL~~Ls~~~~~~~~l~~--~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~ 594 (1019)
.+..+++.|.+ .+...++.|+++|..++.+.+. .+.+ +=+|..+++.-... .+......+-.++.-++...
T Consensus 330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~--~l~DstE~ai~K~Leaa~ds----~~~v~~~Aeed~~~~las~~ 403 (516)
T KOG2956|consen 330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA--RLFDSTEIAICKVLEAAKDS----QDEVMRVAEEDCLTTLASHL 403 (516)
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH--hhhchHHHHHHHHHHHHhCC----chhHHHHHHHHHHHHHHhhC
Confidence 34667788887 6778999999999999987654 3333 22344444422211 22223333334344444443
Q ss_pred CCcccccccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCCCHH
Q 001733 595 LEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHDE 674 (1019)
Q Consensus 595 ~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~~ 674 (1019)
+ ...|..+..++.+ .+...-..++..+..++..-.. +++...+ ....|.+++-.++.+..
T Consensus 404 P----------------~~~I~~i~~~Ilt-~D~~~~~~~iKm~Tkl~e~l~~-EeL~~ll--~diaP~~iqay~S~SS~ 463 (516)
T KOG2956|consen 404 P----------------LQCIVNISPLILT-ADEPRAVAVIKMLTKLFERLSA-EELLNLL--PDIAPCVIQAYDSTSST 463 (516)
T ss_pred c----------------hhHHHHHhhHHhc-CcchHHHHHHHHHHHHHhhcCH-HHHHHhh--hhhhhHHHHHhcCchHH
Confidence 2 2345666677776 6777777777777777765442 3333333 36778888888999999
Q ss_pred HHHHHHHHHHHhCc
Q 001733 675 LAVAAIKLLTTLSP 688 (1019)
Q Consensus 675 vr~~A~~~L~~Ls~ 688 (1019)
+|..|+.+|-.+-.
T Consensus 464 VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 464 VRKTAVFCLVAMVN 477 (516)
T ss_pred hhhhHHHhHHHHHH
Confidence 99999999887764
No 266
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=81.40 E-value=64 Score=39.41 Aligned_cols=128 Identities=12% Similarity=0.063 Sum_probs=85.5
Q ss_pred HHHHHhcCChHHHHHHHHHHH-HhhcCCcchHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCcccc
Q 001733 522 LIRMVHSGNSLTRRIAFKALM-QISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSL 600 (1019)
Q Consensus 522 Lv~lL~~~~~~~~~~A~~aL~-~Ls~~~~~~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~ 600 (1019)
+-+++.+.+|-+|....-++. .-+....+ ++|..|+..--+. ..+++|+.|..+|.-++...
T Consensus 524 I~el~~dkdpilR~~Gm~t~alAy~GTgnn-------kair~lLh~aVsD----~nDDVrRaAVialGFVl~~d------ 586 (929)
T KOG2062|consen 524 IKELLRDKDPILRYGGMYTLALAYVGTGNN-------KAIRRLLHVAVSD----VNDDVRRAAVIALGFVLFRD------ 586 (929)
T ss_pred HHHHhcCCchhhhhhhHHHHHHHHhccCch-------hhHHHhhcccccc----cchHHHHHHHHHheeeEecC------
Confidence 335677777766665443332 22333223 5666666542222 23689999988887665553
Q ss_pred cccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCCCHHHHHHHH
Q 001733 601 QVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAI 680 (1019)
Q Consensus 601 ~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~~vr~~A~ 680 (1019)
...++..+.+|..+-++.+|.-++-+|.-.|...... .++..|-++..++..-||..|+
T Consensus 587 -----------p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~----------eAi~lLepl~~D~~~fVRQgAl 645 (929)
T KOG2062|consen 587 -----------PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK----------EAINLLEPLTSDPVDFVRQGAL 645 (929)
T ss_pred -----------hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH----------HHHHHHhhhhcChHHHHHHHHH
Confidence 3346778889987788999999999998888876541 2344566777777788999999
Q ss_pred HHHHHhC
Q 001733 681 KLLTTLS 687 (1019)
Q Consensus 681 ~~L~~Ls 687 (1019)
-++.-+.
T Consensus 646 Ia~amIm 652 (929)
T KOG2062|consen 646 IALAMIM 652 (929)
T ss_pred HHHHHHH
Confidence 8887765
No 267
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=81.02 E-value=0.89 Score=48.59 Aligned_cols=49 Identities=27% Similarity=0.486 Sum_probs=38.2
Q ss_pred CCCccccccCcccCCC---ceecCCCccccHHHHHHHHhhhccCCCCCCCCCCC
Q 001733 230 LYETFYCPLTKEIMDD---PVTIESGVTYERNAITAWFEKFETSGDIFCPTTGK 280 (1019)
Q Consensus 230 ~~~~~~Cpi~~~~m~d---Pv~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~ 280 (1019)
...-|+||+..+.-.| ||+++|||..-+.+..+--+++. -...||-|..
T Consensus 333 fHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~--~~FKCPYCP~ 384 (396)
T COG5109 333 FHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGV--LSFKCPYCPE 384 (396)
T ss_pred ccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCc--EEeeCCCCCc
Confidence 3346999999999988 99999999999999988766511 1345888743
No 268
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=80.64 E-value=4.3 Score=42.65 Aligned_cols=83 Identities=17% Similarity=0.158 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHHhccChhhhhhhhcccc------hHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchH--HHHhcCC
Q 001733 407 PVRHESLLLLLELSSTRSLCEKIGSIPG------GILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIK--CMAENGL 478 (1019)
Q Consensus 407 ~~r~~Aa~~L~~Ls~~~~~~~~i~~~~g------~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~--~i~~~G~ 478 (1019)
.-|..|..+|..|+..+.|...|-.++. .+..|++++. ..+++..++.|...|.+|+..+.... ...+.+.
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~-~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLG-MREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 5689999999999999988888766432 3445555565 46789999999999999998776443 3346699
Q ss_pred hHHHHHHhccCC
Q 001733 479 LEPLMHHLNEGS 490 (1019)
Q Consensus 479 i~~Lv~lL~~~~ 490 (1019)
|..|+.++.+..
T Consensus 218 i~~Li~FiE~a~ 229 (257)
T PF12031_consen 218 ISHLIAFIEDAE 229 (257)
T ss_pred HHHHHHHHHHHH
Confidence 999999998643
No 269
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=80.12 E-value=1.6e+02 Score=36.94 Aligned_cols=179 Identities=12% Similarity=0.049 Sum_probs=107.4
Q ss_pred HHHHhhcCC-cchHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCcccccccccCcccchhhhH-HH
Q 001733 540 ALMQISSHH-PSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVV-YN 617 (1019)
Q Consensus 540 aL~~Ls~~~-~~~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i-~~ 617 (1019)
+|+++.... +++..+++.|++..+...+.... ....+..+..+|.|++.....+... .....+- ..
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~----~~~~~~~il~~l~n~~~~~~~~~~~--------~~~~~~~~~~ 561 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFD----NEELHRKILGLLGNLAEVLELRELL--------MIFEFIDFSV 561 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhcc----chhHHHHHHHHHHHHHHHhhhhhhh--------hHHHHHHHHH
Confidence 888988665 56999999999999999988653 2488999999999999876544311 1111111 13
Q ss_pred HHHHHcCCCCH-HHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHhCcCCChhHHH
Q 001733 618 IIYMLKNSTPD-ELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTLSPYLGHTLVE 696 (1019)
Q Consensus 618 Ll~LL~~~~~~-~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~~vr~~A~~~L~~Ls~~~~~~~~~ 696 (1019)
+-.++.. .+. +.-..++.+|+.+..+.+.... .+ ..+.+...-..++.... ......
T Consensus 562 f~~~~~~-w~~~ersY~~~siLa~ll~~~~~~~~-------~~-----------~r~~~~~~l~e~i~~~~---~~~~~~ 619 (699)
T KOG3665|consen 562 FKVLLNK-WDSIERSYNAASILALLLSDSEKTTE-------CV-----------FRNSVNELLVEAISRWL---TSEIRV 619 (699)
T ss_pred HHHHHhh-cchhhHHHHHHHHHHHHHhCCCcCcc-------cc-----------chHHHHHHHHHHhhccC---ccceee
Confidence 3335554 444 7778888888888775432000 00 00111111112222221 111111
Q ss_pred HhhhcCCChhH-hhcccCCCCcChHHHHHHHHHHhccCCCChhhHHHHHhCCChHHHHHHH
Q 001733 697 RLCKTRGQPEN-LIQCPTETIHITEKQAVSAKFLAKLPHQNLTLNLALSARNVVPTILQTI 756 (1019)
Q Consensus 697 ~l~~~~g~i~~-LV~lL~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~l~~~g~l~~Lv~lL 756 (1019)
... ....+ +.+++..+. ....+.-|++.+.++...+++..+.+.+.|+++.+.+.-
T Consensus 620 ~~~---~~f~~~~~~il~~s~-~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (699)
T KOG3665|consen 620 IND---RSFFPRILRILRLSK-SDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIR 676 (699)
T ss_pred hhh---hhcchhHHHHhcccC-CCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcc
Confidence 111 11222 444454444 346788899999999998888888888899988887764
No 270
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=79.85 E-value=1.4 Score=48.52 Aligned_cols=51 Identities=33% Similarity=0.537 Sum_probs=46.4
Q ss_pred cccccCcccCCCceecCCCccccHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCcc
Q 001733 234 FYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNT 289 (1019)
Q Consensus 234 ~~Cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~~~~l~p 289 (1019)
-.|.++..-|.|||-...|-.|+-..|.-|+.. +.+=|+|++++...+|++
T Consensus 41 ~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk-----~g~nP~tG~kl~~~dLIk 91 (518)
T KOG0883|consen 41 NHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKK-----HGTNPITGQKLDGKDLIK 91 (518)
T ss_pred hhceeccccccCcccccCCcEEeeehhhHHHHH-----cCCCCCCCCcccccccee
Confidence 579999999999999999999999999999998 456799999999888775
No 271
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=79.37 E-value=63 Score=36.69 Aligned_cols=104 Identities=16% Similarity=0.120 Sum_probs=69.6
Q ss_pred CCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHhcCC----C-hhHHHHHHHHHHHhcc-Chhhhhhhhcccch
Q 001733 362 KDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSS----H-RPVRHESLLLLLELSS-TRSLCEKIGSIPGG 435 (1019)
Q Consensus 362 ~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL~~~----~-~~~r~~Aa~~L~~Ls~-~~~~~~~i~~~~g~ 435 (1019)
.+..+..+|+++|+|+...+...|....+......+...+... . ..++..=..+|+-|+. ....+.++....+|
T Consensus 109 ~d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~G 188 (532)
T KOG4464|consen 109 ADMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLG 188 (532)
T ss_pred cchHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 3568899999999999988888888888776666666555321 1 2344455566666655 34667777777899
Q ss_pred HHHHHHhhhcC----C---CC---h---HHHHHHHHHHHHhcC
Q 001733 436 ILVLITFKFNW----S---ID---V---FAAEIADQILRNLER 465 (1019)
Q Consensus 436 I~~LV~lL~~~----~---~~---~---~~~~~A~~aL~nLs~ 465 (1019)
++.+.+.|... + .+ | ...-.++.+++|+..
T Consensus 189 l~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~ 231 (532)
T KOG4464|consen 189 LELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTC 231 (532)
T ss_pred cHHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheee
Confidence 99999998521 1 11 1 334456667788764
No 272
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.05 E-value=2e+02 Score=36.76 Aligned_cols=484 Identities=13% Similarity=0.112 Sum_probs=239.4
Q ss_pred chHHHHHHhhhcCCCChHHHHHHHHHHHHh-cCCCCchHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCccccc
Q 001733 434 GGILVLITFKFNWSIDVFAAEIADQILRNL-ERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDSKI 512 (1019)
Q Consensus 434 g~I~~LV~lL~~~~~~~~~~~~A~~aL~nL-s~~~~n~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~ 512 (1019)
.++..|-.+.- ..++.+.+-.....++.+ +.+++|-...-+.-.+|.|+.-+..-+..++...+.+|.--.. .-++
T Consensus 466 eAvqmLqdiFL-kaenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmegfPsslqvkiLkilEyAVt-vvnc- 542 (2799)
T KOG1788|consen 466 EAVQMLQDIFL-KAENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGFPSSLQVKILKILEYAVT-VVNC- 542 (2799)
T ss_pred HHHHHHHHHHH-HhcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCCChHHHHHHHHHHHHHHh-hhcc-
Confidence 34555554422 244455566666677776 4567777666677788888888876666666665555532111 0000
Q ss_pred ccccchHHHHHHHHhcC-ChHHHHHHHHHHHHhhcCCc-chHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHH
Q 001733 513 NVPGRAASTLIRMVHSG-NSLTRRIAFKALMQISSHHP-SCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANI 590 (1019)
Q Consensus 513 ~i~~~~i~~Lv~lL~~~-~~~~~~~A~~aL~~Ls~~~~-~~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L 590 (1019)
+-+.-+-.|--+|+.+ +..++.--+.....|-+.+. .++.+.+-|+++.|...++.+..--.|+.- .. ....
T Consensus 543 -vPeqELlSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpdqy----sg-vseh 616 (2799)
T KOG1788|consen 543 -VPEQELLSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQY----SG-VSEH 616 (2799)
T ss_pred -CcHHHHHHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcchh----hh-HHHH
Confidence 0011122233344443 23344444555555555554 478888999999999888764211011100 00 1111
Q ss_pred HhcCCCc----------ccccccccCcccchh-hhHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcC
Q 001733 591 LESGLEH----------HSLQVNSHGHTMVSD-YVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETE 659 (1019)
Q Consensus 591 ~~~~~~~----------~~~~v~~~g~~l~~~-~~i~~Ll~LL~~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g 659 (1019)
...+... ..+.+.+ +.+.+. |-.+....++.- .....+|..+-.+. .+..+.++++.
T Consensus 617 ydrnpss~sf~~~ld~~daiissp--klmeSgsgklplfevllti-------tvgwDcLisllKnn---teNqklFrean 684 (2799)
T KOG1788|consen 617 YDRNPSSPSFKQHLDSQDAIISSP--KLMESGSGKLPLFEVLLTI-------TVGWDCLISLLKNN---TENQKLFREAN 684 (2799)
T ss_pred hhcCCCCchhhhccccccceeecc--hhhcccCCccchhhhhhhh-------hchHHHHHHHHhcc---chhhHHHHhhc
Confidence 1111111 1111100 001110 011111111110 00112333333322 22356788999
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHhCcCCChhHHHHhhhcCCChhHhhcccCCCCc----------ChHHHHHHHHHH
Q 001733 660 ASYSLLEVINNPHDELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCPTETIH----------ITEKQAVSAKFL 729 (1019)
Q Consensus 660 ~i~~Lv~LL~~~~~~vr~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~LV~lL~~~~~----------~~~~~~~A~~~L 729 (1019)
|+..+++++ -+++-|..-++++.+|-...+..+. ..-+..||..|+++-. ......+.+|++
T Consensus 685 Gvklilpfl--indehRSslLrivscLitvdpkqvh------hqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGal 756 (2799)
T KOG1788|consen 685 GVKLILPFL--INDEHRSSLLRIVSCLITVDPKQVH------HQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGAL 756 (2799)
T ss_pred CceEEEEee--echHHHHHHHHHHHHHhccCccccc------HHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHH
Confidence 999999888 4567777778888888743332111 1234566776666320 113455677888
Q ss_pred hccCCCChhhHHHHHhCCChHHHHHHHHhhhcc-CCCccchhhhHHHHHHHHHHHHhcCC--CchhHHHHHHhCCchHHH
Q 001733 730 AKLPHQNLTLNLALSARNVVPTILQTINLIQRS-GTRTSRYASAYLEGLIGILVRFTTTL--YEPQILFLARTHNFTSVF 806 (1019)
Q Consensus 730 ~nL~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~-~~~~~~~~~~~~e~a~~aL~~lt~~~--~~~~~~~~~~~~g~i~~L 806 (1019)
+.+...+...++.+-++|++..|..+|.--+.- ........+.+++ .+.+|.++-... .|+.++......=.-..+
T Consensus 757 wrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyik-lfkilFrlfTlavcenasNrmklhtvITsqtf 835 (2799)
T KOG1788|consen 757 WRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIK-LFKILFRLFTLAVCENASNRMKLHTVITSQTF 835 (2799)
T ss_pred HHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHH-HHHHHHHHHHHHHhhcchhhhheeeeeeHHHH
Confidence 888776777788899999999999998743321 0111112233332 444544432100 033333322211111244
Q ss_pred HHHHhcCC--cHHHHHHHHHHHhhhcccCCcCCCCCCcCCcccccccccCcccccCCCCCCCCCCCcccCCccccCccch
Q 001733 807 TELLMKTS--CDEVQKLAAIGLENLSSESINLSKPPQIKSKKFMKFFSLPKSLSVGSSKKKSVSLCPVHRGACSSQNTFC 884 (1019)
Q Consensus 807 v~LL~~~~--~~~vk~~AA~aL~nLs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~v~~~~cs~~~~~~ 884 (1019)
..||+.++ -.+.-+.....|..+.
T Consensus 836 tsLLresgllcvnler~viqlllEla------------------------------------------------------ 861 (2799)
T KOG1788|consen 836 TSLLRESGLLCVNLERHVIQLLLELA------------------------------------------------------ 861 (2799)
T ss_pred HHHHHHhccceecchHHHHHHHHHHH------------------------------------------------------
Confidence 45554422 1111111222221111
Q ss_pred hhhccchHHHHhhhccCchhhHHHHHHHHHhhhccCc--c-----hhhHHHHHHhccchHHHHHHHhhcChhhHHHHHHH
Q 001733 885 LIDAKAVDRLLACLYHENVEVVEAALSALCTLLDEKV--D-----VDKSVSMLSEVNAIQHVLNVVKEHRQEVLQQKSFW 957 (1019)
Q Consensus 885 Lv~~gai~~Lv~lL~~~d~~v~~~Al~AL~~L~~d~~--~-----~~~~~~~i~~~~~i~~l~~lL~~~~~~~~~~~A~~ 957 (1019)
.+. |-..+-.--.+|+..+..+-.+-+ + +.+--..|..+|+++.|++.+. ...+.+|-.-+.
T Consensus 862 ------lev----lvppfLtSEsaAcaeVfelednifavntPsGqfnpdk~~iynagavRvlirslL-lnypK~qlefl~ 930 (2799)
T KOG1788|consen 862 ------LEV----LVPPFLTSESAACAEVFELEDNIFAVNTPSGQFNPDKQKIYNAGAVRVLIRSLL-LNYPKLQLEFLN 930 (2799)
T ss_pred ------HHh----hCCchhhhhHHHHHHHhhcccceeeeccCCCCcCchHhhhcccchhHHHHHHHH-hhChHHHHHHHH
Confidence 111 111111111122222221110000 0 1122356888999999999887 567999999999
Q ss_pred HHHHHHhhCCccccccccccccchHH---HHHHhhcCCchhhHHHHHHHHHhccCCCCCC
Q 001733 958 MIERFLVKGGNKQASDISQDRLLPAT---LVSAFHHGDVNTRQMAEKILRHLNKMPNFSA 1014 (1019)
Q Consensus 958 aL~~i~~~~~~~~~~~~~~~~~~~~~---Lv~ll~~~~~~~~~~Aa~~L~~L~~~~~~s~ 1014 (1019)
+++...+.. ....+.-.+++-... +|--+-+|+...-.+|.++...|.-++--+|
T Consensus 931 lleSlaRas--pfnaelltS~gcvellleIiypflsgsspfLshalkIvemLgayrlsps 988 (2799)
T KOG1788|consen 931 LLESLARAS--PFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIVEMLGAYRLSPS 988 (2799)
T ss_pred HHHHHhhcC--CCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHHHHHhhccCCcH
Confidence 999998873 333322222222222 3444778888888899999998888776553
No 273
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=79.03 E-value=0.86 Score=38.18 Aligned_cols=51 Identities=20% Similarity=0.261 Sum_probs=35.3
Q ss_pred CCccccccCcccCCC-ceec-CCCccccHHHHHHHHhhhccCCCCCCCCCCCCCC
Q 001733 231 YETFYCPLTKEIMDD-PVTI-ESGVTYERNAITAWFEKFETSGDIFCPTTGKKLM 283 (1019)
Q Consensus 231 ~~~~~Cpi~~~~m~d-Pv~~-~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~ 283 (1019)
|-+-.||-|.--=.| |.++ -|-|.|-+.||.+|.... +....||.|++..+
T Consensus 29 ~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~--tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 29 PFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTP--TSQGQCPMCRQTWQ 81 (84)
T ss_pred ccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCc--cccccCCcchheeE
Confidence 334555655433333 6666 788999999999999862 23457999998654
No 274
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=78.97 E-value=0.47 Score=58.14 Aligned_cols=47 Identities=13% Similarity=0.299 Sum_probs=39.1
Q ss_pred cccccCcccCCCceecCCCccccHHHHHHHHhhhccCCCCCCCCCCCCCCC
Q 001733 234 FYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMS 284 (1019)
Q Consensus 234 ~~Cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~~ 284 (1019)
+.|++|.+ ..+||++.|||-||+.|+.+.++.. ....||.|+..+..
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~---~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQS---ENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccc---cCCCCcHHHHHHHH
Confidence 89999999 8889999999999999999988752 34469999765543
No 275
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=78.62 E-value=1.3 Score=35.05 Aligned_cols=46 Identities=13% Similarity=0.113 Sum_probs=33.1
Q ss_pred ccccccCcccCCCceecCCCccccHHHHHHHHhhhccCCCCCCCCCCCCCCCC
Q 001733 233 TFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSR 285 (1019)
Q Consensus 233 ~~~Cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~~~ 285 (1019)
+..|=.++..=...++++|||-.++.|-.- + ...-||+|+.++...
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~---~----rYngCPfC~~~~~~~ 52 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLICDNCFPG---E----RYNGCPFCGTPFEFD 52 (55)
T ss_pred ceeEEEccccccccccccccceeeccccCh---h----hccCCCCCCCcccCC
Confidence 344556666667788999999999998321 2 344699999988653
No 276
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=78.44 E-value=13 Score=47.33 Aligned_cols=142 Identities=18% Similarity=0.105 Sum_probs=109.7
Q ss_pred CHHHHHHHhc----CCChhHHHHHHHHHHHhcc-ChhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCC
Q 001733 393 DISILIKLLS----SSHRPVRHESLLLLLELSS-TRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNP 467 (1019)
Q Consensus 393 ~i~~Lv~lL~----~~~~~~r~~Aa~~L~~Ls~-~~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~ 467 (1019)
..|.+++..+ .+++++|..|.-+|..+.. +.+.+. -..|.|++++. .+++|.++.++..+|..|+..-
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce------s~l~llftime-ksp~p~IRsN~VvalgDlav~f 992 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE------SHLPLLFTIME-KSPSPRIRSNLVVALGDLAVRF 992 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH------HHHHHHHHHHh-cCCCceeeecchheccchhhhc
Confidence 4566666663 3568999999999998865 344444 35789999997 5788999999999999998655
Q ss_pred CchHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCcccccccccchHHHHHHHHhcCChHHHHHHHHHHHHhhcC
Q 001733 468 DNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDSKINVPGRAASTLIRMVHSGNSLTRRIAFKALMQISSH 547 (1019)
Q Consensus 468 ~n~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~ 547 (1019)
.|-..- .-+.|.+.|.+.++.++..|..+|..|-.++--| ++|-++-+...|.++++.++..|=.....|+..
T Consensus 993 pnlie~----~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiK---VKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k 1065 (1251)
T KOG0414|consen 993 PNLIEP----WTEHLYRRLRDESPSVRKTALLVLSHLILNDMIK---VKGQLSEMALCLEDPNAEISDLAKSFFKELSSK 1065 (1251)
T ss_pred ccccch----hhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhH---hcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhc
Confidence 553221 3367888999999999999999999998765322 346688899999999999999888888888866
Q ss_pred C
Q 001733 548 H 548 (1019)
Q Consensus 548 ~ 548 (1019)
.
T Consensus 1066 ~ 1066 (1251)
T KOG0414|consen 1066 G 1066 (1251)
T ss_pred c
Confidence 5
No 277
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=78.28 E-value=21 Score=42.75 Aligned_cols=119 Identities=15% Similarity=0.111 Sum_probs=63.8
Q ss_pred ChhHHHHHHHHHHHhccChhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCC-CCchHHHHhcCChHHHH
Q 001733 405 HRPVRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERN-PDNIKCMAENGLLEPLM 483 (1019)
Q Consensus 405 ~~~~r~~Aa~~L~~Ls~~~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~-~~n~~~i~~~G~i~~Lv 483 (1019)
+..++..|+..+......-.... ..+|..+++|. ..+|..++..|...|..+|.+ ++...+++ ..|+
T Consensus 35 ~~k~K~Laaq~I~kffk~FP~l~-----~~Ai~a~~DLc--EDed~~iR~~aik~lp~~ck~~~~~v~kva-----DvL~ 102 (556)
T PF05918_consen 35 SPKEKRLAAQFIPKFFKHFPDLQ-----EEAINAQLDLC--EDEDVQIRKQAIKGLPQLCKDNPEHVSKVA-----DVLV 102 (556)
T ss_dssp -HHHHHHHHHHHHHHHCC-GGGH-----HHHHHHHHHHH--T-SSHHHHHHHHHHGGGG--T--T-HHHHH-----HHHH
T ss_pred CHHHHHHHHHHHHHHHhhChhhH-----HHHHHHHHHHH--hcccHHHHHHHHHhHHHHHHhHHHHHhHHH-----HHHH
Confidence 34445555555444433221111 23455555665 356778888999999999864 45666654 6899
Q ss_pred HHhccCCHHHHHHHHHHHHHhcc-CcccccccccchHHHHHHHHh---cCChHHHHHHHHHHH
Q 001733 484 HHLNEGSEEIQMEMASYLGEIVL-GHDSKINVPGRAASTLIRMVH---SGNSLTRRIAFKALM 542 (1019)
Q Consensus 484 ~lL~~~~~~~~~~aa~~L~~La~-~~~~~~~i~~~~i~~Lv~lL~---~~~~~~~~~A~~aL~ 542 (1019)
++|.++++.-...+-.+|..|-. ++ .+.+..|..-+. +++..+++.++..|.
T Consensus 103 QlL~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 103 QLLQTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp HHTT---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 99997765444444445544432 21 234555555444 567778888887774
No 278
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.18 E-value=37 Score=42.06 Aligned_cols=179 Identities=12% Similarity=0.121 Sum_probs=102.6
Q ss_pred cCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHhcCCChhHHHHHHHHHHHhccChhhhhhhhcccchHHHHH
Q 001733 361 YKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSSHRPVRHESLLLLLELSSTRSLCEKIGSIPGGILVLI 440 (1019)
Q Consensus 361 s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~~~~~~~i~~~~g~I~~LV 440 (1019)
++-..++-.++..|+.+. .+.+....+...+.+......|++.++-+--+|+..+..||... ....+|.|.
T Consensus 738 d~qvpik~~gL~~l~~l~-e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy--------~e~il~dL~ 808 (982)
T KOG4653|consen 738 DDQVPIKGYGLQMLRHLI-EKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVY--------PEDILPDLS 808 (982)
T ss_pred CCcccchHHHHHHHHHHH-HhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhc--------chhhHHHHH
Confidence 344567788888888887 33355566777889999999999999888888888666666531 123445555
Q ss_pred Hh-hhcCC-CChHHHHHHHHHHHHhcCCCCchHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCcccc-cccccc
Q 001733 441 TF-KFNWS-IDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDSK-INVPGR 517 (1019)
Q Consensus 441 ~l-L~~~~-~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~-~~i~~~ 517 (1019)
+- .+... ..++.+-..-.++.++.........=..+-.+..++...++++...+..+.+.|++||.--..+ ......
T Consensus 809 e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~e 888 (982)
T KOG4653|consen 809 EEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHE 888 (982)
T ss_pred HHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHH
Confidence 42 21111 1122233333555555421111100001123344555556566667888888999988622111 111112
Q ss_pred hHHHHHHHHhc-CChHHHHHHHHHHHHhhcCC
Q 001733 518 AASTLIRMVHS-GNSLTRRIAFKALMQISSHH 548 (1019)
Q Consensus 518 ~i~~Lv~lL~~-~~~~~~~~A~~aL~~Ls~~~ 548 (1019)
.+..++.+.+. |++-+|+.|+.++..+-..-
T Consensus 889 v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~t 920 (982)
T KOG4653|consen 889 VLQLILSLETTDGSVLVRRAAVHLLAELLNGT 920 (982)
T ss_pred HHHHHHHHHccCCchhhHHHHHHHHHHHHhcc
Confidence 34445555543 57788999999888876543
No 279
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=77.92 E-value=30 Score=41.58 Aligned_cols=172 Identities=17% Similarity=0.147 Sum_probs=108.5
Q ss_pred cCCHHHHHHHHHHHHHHHhcccccchHHH---hcCChHHHHHHhhcCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHH
Q 001733 319 AGSDRMVLEAIKDLQTVCQRKQYNKVQVR---NVGVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDIS 395 (1019)
Q Consensus 319 ~~~~~~~~~Al~~L~~l~~~~~~~r~~i~---~~g~i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~ 395 (1019)
.-+.+++--|+.-||.+.+....+-..+- ....+..++..+. .++..+.-++++|.|+- .++.+++.+... ..
T Consensus 555 ~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f-~~~~g~~~~~s~--~~ 630 (745)
T KOG0301|consen 555 QWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLF-SNPAGRELFMSR--LE 630 (745)
T ss_pred cCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhc-cCHHHHHHHHHH--HH
Confidence 34556677788888888887666543332 1224455555555 56888999999999997 567777777643 22
Q ss_pred HHHHH---hcC-CChhHHHHHHHHHHHhccC--hhhhhhhhcccchHHHHHHhhh---cCCCChHHHHHHHHHHHHhcCC
Q 001733 396 ILIKL---LSS-SHRPVRHESLLLLLELSST--RSLCEKIGSIPGGILVLITFKF---NWSIDVFAAEIADQILRNLERN 466 (1019)
Q Consensus 396 ~Lv~l---L~~-~~~~~r~~Aa~~L~~Ls~~--~~~~~~i~~~~g~I~~LV~lL~---~~~~~~~~~~~A~~aL~nLs~~ 466 (1019)
.+... .++ .+..++..-+.+.+|+|.. ..+-+ .|+.+.|...+. ...+|-++.-..+.||.+|+..
T Consensus 631 ~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~-----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~ 705 (745)
T KOG0301|consen 631 SILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ-----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTV 705 (745)
T ss_pred HHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc-----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccc
Confidence 22222 223 3356666666666777652 11111 344444444332 2445667788889999999999
Q ss_pred CCchHHHHhcCChHHHHHHhcc-CCHHHHHHHHH
Q 001733 467 PDNIKCMAENGLLEPLMHHLNE-GSEEIQMEMAS 499 (1019)
Q Consensus 467 ~~n~~~i~~~G~i~~Lv~lL~~-~~~~~~~~aa~ 499 (1019)
+.+..++++.-.|..++.-+++ .+.....+.+.
T Consensus 706 ~~~~~~~A~~~~v~sia~~~~~~~~~~~~k~~a~ 739 (745)
T KOG0301|consen 706 DASVIQLAKNRSVDSIAKKLKEAVSNPSGKNIAR 739 (745)
T ss_pred cHHHHHHHHhcCHHHHHHHHHHhccCchhhHHHH
Confidence 9999999988788888888874 23333444443
No 280
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=77.92 E-value=16 Score=43.77 Aligned_cols=125 Identities=20% Similarity=0.121 Sum_probs=75.4
Q ss_pred cCCHHHHHHHHHHHHHHHhcccccchHHHhcCChHHHHHHhhcCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHH
Q 001733 319 AGSDRMVLEAIKDLQTVCQRKQYNKVQVRNVGVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILI 398 (1019)
Q Consensus 319 ~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv 398 (1019)
.++..+..-|..-|....+.-|.-.. .+|..++.+..+.|..+|..|+..|-.+++++++.-..| +..|+
T Consensus 33 kg~~k~K~Laaq~I~kffk~FP~l~~-----~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-----aDvL~ 102 (556)
T PF05918_consen 33 KGSPKEKRLAAQFIPKFFKHFPDLQE-----EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-----ADVLV 102 (556)
T ss_dssp GS-HHHHHHHHHHHHHHHCC-GGGHH-----HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-----HHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-----HHHHH
Confidence 35667777788888877777776443 368889999999999999999999999997776665555 46789
Q ss_pred HHhcCCChhHHHHHHHHHHHhccChhhhhhhhcccchHHHHHHhhh-cCCCChHHHHHHHHHHH
Q 001733 399 KLLSSSHRPVRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKF-NWSIDVFAAEIADQILR 461 (1019)
Q Consensus 399 ~lL~~~~~~~r~~Aa~~L~~Ls~~~~~~~~i~~~~g~I~~LV~lL~-~~~~~~~~~~~A~~aL~ 461 (1019)
.+|.++++......-.+|..|-..+. .+.+..|...+. ..+++..+++.+...|.
T Consensus 103 QlL~tdd~~E~~~v~~sL~~ll~~d~--------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 103 QLLQTDDPVELDAVKNSLMSLLKQDP--------KGTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp HHTT---HHHHHHHHHHHHHHHHH-H--------HHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHHHHhcCc--------HHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 99999887655555555555543221 233344444432 12345667777766664
No 281
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=77.75 E-value=15 Score=37.45 Aligned_cols=73 Identities=11% Similarity=0.094 Sum_probs=58.7
Q ss_pred cchHHHHHHhhhc-------CCCChHHHHHHHHHHHHhcCCCCchHHHHh-cCChHHHHHHhccCCHHHHHHHHHHHHHh
Q 001733 433 PGGILVLITFKFN-------WSIDVFAAEIADQILRNLERNPDNIKCMAE-NGLLEPLMHHLNEGSEEIQMEMASYLGEI 504 (1019)
Q Consensus 433 ~g~I~~LV~lL~~-------~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~-~G~i~~Lv~lL~~~~~~~~~~aa~~L~~L 504 (1019)
.||+..|+++|.. ...+......++.+|..+..+......+.+ .+++..|+..|.+.+..++..++.+|..+
T Consensus 106 ~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~l 185 (187)
T PF06371_consen 106 LGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAAL 185 (187)
T ss_dssp HHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 7899999998751 124557788899999999988877777776 48999999999999999999999999887
Q ss_pred c
Q 001733 505 V 505 (1019)
Q Consensus 505 a 505 (1019)
|
T Consensus 186 c 186 (187)
T PF06371_consen 186 C 186 (187)
T ss_dssp H
T ss_pred H
Confidence 6
No 282
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=77.70 E-value=0.76 Score=58.21 Aligned_cols=82 Identities=16% Similarity=0.250 Sum_probs=54.0
Q ss_pred CCCcchhHhhcccccccCCCCCCCccccCchhhhccccCCCCccccccCcccCC-CceecCCCccccHHHHHHHHhhhcc
Q 001733 191 YDMPLPIEYFGSTSLSSQSSDHSTSRSISLPKVAQYIEPLYETFYCPLTKEIMD-DPVTIESGVTYERNAITAWFEKFET 269 (1019)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cpi~~~~m~-dPv~~~~g~t~~r~~I~~~~~~~~~ 269 (1019)
...++.+.|+++.... +.+.... +..+.+-.-+...+..++.||||+++|+ -=-+.-|||-||.+|++-|...
T Consensus 1114 ls~~G~~r~lk~l~e~--~~~~~~~-i~~~es~~~y~~~~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~--- 1187 (1394)
T KOG0298|consen 1114 LSIPGLLRYLKGLKES--KADTPCK-IAQTESDVRYLMNLSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA--- 1187 (1394)
T ss_pred hccchHHHHHHHHHHH--hccCccc-cCCccchHHHHHHhhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH---
Confidence 3566777777664431 1010011 1111111223345778899999999999 4667799999999999999997
Q ss_pred CCCCCCCCCCC
Q 001733 270 SGDIFCPTTGK 280 (1019)
Q Consensus 270 ~~~~~cP~~~~ 280 (1019)
+..||.|+.
T Consensus 1188 --~s~~~~~ks 1196 (1394)
T KOG0298|consen 1188 --SSRCPICKS 1196 (1394)
T ss_pred --hccCcchhh
Confidence 567999863
No 283
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=77.69 E-value=10 Score=38.77 Aligned_cols=93 Identities=18% Similarity=0.276 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhccccc-chHHHhcCChHHHHHHhhc---------CCHHHHHHHHHHHHhhccCChhHHHHHHh-cCCHH
Q 001733 327 EAIKDLQTVCQRKQYN-KVQVRNVGVLPLLTKLLEY---------KDRNVRCAAMELLRQLVVEDDEGKEMIAE-TMDIS 395 (1019)
Q Consensus 327 ~Al~~L~~l~~~~~~~-r~~i~~~g~i~~Lv~lL~s---------~~~~~~~~Al~~L~~La~~~~~~k~~I~~-~g~i~ 395 (1019)
+.+..|+...+.++.. -..+.+.||+..|+..|.. .+.+.+..++.+|..+. ++..+...+.. .+++.
T Consensus 83 ~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~-n~~~G~~~v~~~~~~v~ 161 (187)
T PF06371_consen 83 KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM-NTKYGLEAVLSHPDSVN 161 (187)
T ss_dssp HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT-SSHHHHHHHHCSSSHHH
T ss_pred HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH-ccHHHHHHHHcCcHHHH
Confidence 3444444444443322 1235567889999988852 35678889999999997 66666666664 78999
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHhc
Q 001733 396 ILIKLLSSSHRPVRHESLLLLLELS 420 (1019)
Q Consensus 396 ~Lv~lL~~~~~~~r~~Aa~~L~~Ls 420 (1019)
.|+..|.+.+..+|..++.+|.-++
T Consensus 162 ~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 162 LIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999988765
No 284
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=76.95 E-value=2 Score=34.25 Aligned_cols=39 Identities=15% Similarity=0.429 Sum_probs=22.9
Q ss_pred CccccccCcccCCCceecCCCccccHHHHHHHHhhhccCCCCCCCCCCC
Q 001733 232 ETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGK 280 (1019)
Q Consensus 232 ~~~~Cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~ 280 (1019)
+.|.||.|++-+... .+.+.+.++...+ +....||+|..
T Consensus 1 ~~f~CP~C~~~~~~~-------~L~~H~~~~H~~~---~~~v~CPiC~~ 39 (54)
T PF05605_consen 1 DSFTCPYCGKGFSES-------SLVEHCEDEHRSE---SKNVVCPICSS 39 (54)
T ss_pred CCcCCCCCCCccCHH-------HHHHHHHhHCcCC---CCCccCCCchh
Confidence 469999999832221 2334444444433 23567999965
No 285
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=76.82 E-value=4.7 Score=42.36 Aligned_cols=80 Identities=23% Similarity=0.233 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHhhccCChhHHHHHHhcCC---HHH----HHHHhc-CCChhHHHHHHHHHHHhccCh-hhhhhhhcccc
Q 001733 364 RNVRCAAMELLRQLVVEDDEGKEMIAETMD---ISI----LIKLLS-SSHRPVRHESLLLLLELSSTR-SLCEKIGSIPG 434 (1019)
Q Consensus 364 ~~~~~~Al~~L~~La~~~~~~k~~I~~~g~---i~~----Lv~lL~-~~~~~~r~~Aa~~L~~Ls~~~-~~~~~i~~~~g 434 (1019)
..-|.-|+++|++|+ ..+.|-..|...+- ++. |+++|. .+++..|+.|+.+|.+|+..+ ..+..++...+
T Consensus 138 lSPqrlaLEaLcKLs-V~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~ 216 (257)
T PF12031_consen 138 LSPQRLALEALCKLS-VIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKP 216 (257)
T ss_pred CCHHHHHHHHHHHhh-eeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence 346889999999998 77788777766653 333 344443 367889999999999999966 45667888899
Q ss_pred hHHHHHHhhh
Q 001733 435 GILVLITFKF 444 (1019)
Q Consensus 435 ~I~~LV~lL~ 444 (1019)
+|..|+..+.
T Consensus 217 ~i~~Li~FiE 226 (257)
T PF12031_consen 217 CISHLIAFIE 226 (257)
T ss_pred hHHHHHHHHH
Confidence 9999999985
No 286
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=75.94 E-value=75 Score=34.58 Aligned_cols=219 Identities=15% Similarity=0.147 Sum_probs=127.2
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHhccC-hhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHHH
Q 001733 396 ILIKLLSSSHRPVRHESLLLLLELSST-RSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMA 474 (1019)
Q Consensus 396 ~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~-~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~ 474 (1019)
.|-..|.+++...|..|+.+|.+.... +... + ...-+..|++...+.-+|......++.+|..|.....-..
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~--L--~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~--- 75 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDF--L--SRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSP--- 75 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh--c--cHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCCh---
Confidence 345678888899999998888876442 2111 1 1334567777765455677777777888887774332111
Q ss_pred hcCChHHHHHHhc------cCCHHHHHHHHHHHHHhccCcc-cccccccchHHHHHHHHhc-CChHHHHHHHHHHHHhhc
Q 001733 475 ENGLLEPLMHHLN------EGSEEIQMEMASYLGEIVLGHD-SKINVPGRAASTLIRMVHS-GNSLTRRIAFKALMQISS 546 (1019)
Q Consensus 475 ~~G~i~~Lv~lL~------~~~~~~~~~aa~~L~~La~~~~-~~~~i~~~~i~~Lv~lL~~-~~~~~~~~A~~aL~~Ls~ 546 (1019)
+.+..+++.+. +-....|..+..+|..|..+.. .-..++...+..+++.+.. .+|+....+...+..+..
T Consensus 76 --~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~ 153 (262)
T PF14500_consen 76 --ESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQ 153 (262)
T ss_pred --hhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 11223333222 1234567777777777765432 2223333467888888775 478888888888777765
Q ss_pred CCcchHHHHHcCcHHHHHHHHhh-------hccCCCChh-HHHHHHHHHHHHHhcCCCcccccccccCcccchhhhHHHH
Q 001733 547 HHPSCKILVEAGIVQVMAEEMFI-------RIIHNEPMN-SKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNI 618 (1019)
Q Consensus 547 ~~~~~~~l~~~G~v~~Lv~lL~~-------~~~~~~~~~-~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~L 618 (1019)
.-+. ....+.|.+.+.. +..+ .|.. .++.-...|.+.-.+. ..-....++.|
T Consensus 154 ~~~~------~~~~e~lFd~~~cYFPI~F~pp~~-dp~~IT~edLk~~L~~cl~s~-------------~~fa~~~~p~L 213 (262)
T PF14500_consen 154 EFDI------SEFAEDLFDVFSCYFPITFRPPPN-DPYGITREDLKRALRNCLSST-------------PLFAPFAFPLL 213 (262)
T ss_pred hccc------chhHHHHHHHhhheeeeeeeCCCC-CCCCCCHHHHHHHHHHHhcCc-------------HhhHHHHHHHH
Confidence 4331 2233334443331 1111 1111 2233333344433321 12346788999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHhCC
Q 001733 619 IYMLKNSTPDELNVHLIRILQCLTKS 644 (1019)
Q Consensus 619 l~LL~~~~~~~v~~~a~~aL~~La~~ 644 (1019)
++=|.+ +++.+|..++.+|..++..
T Consensus 214 leKL~s-~~~~~K~D~L~tL~~c~~~ 238 (262)
T PF14500_consen 214 LEKLDS-TSPSVKLDSLQTLKACIEN 238 (262)
T ss_pred HHHHcC-CCcHHHHHHHHHHHHHHHH
Confidence 999998 8899999999999887653
No 287
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=75.42 E-value=1.3 Score=53.88 Aligned_cols=49 Identities=18% Similarity=0.451 Sum_probs=36.9
Q ss_pred CccccccCcccCC--C---ceec--CCCccccHHHHHHHHhhhccCCCCCCCCCCCCCC
Q 001733 232 ETFYCPLTKEIMD--D---PVTI--ESGVTYERNAITAWFEKFETSGDIFCPTTGKKLM 283 (1019)
Q Consensus 232 ~~~~Cpi~~~~m~--d---Pv~~--~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~ 283 (1019)
..--||||.-++. | |--- .|.|.|--+|+-+||.+ +++.+||.||..++
T Consensus 1468 G~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~S---s~~s~CPlCRseit 1523 (1525)
T COG5219 1468 GHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFAS---SARSNCPLCRSEIT 1523 (1525)
T ss_pred CcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHh---cCCCCCCccccccc
Confidence 3446999998875 3 3322 46788889999999998 47889999987543
No 288
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=75.30 E-value=1.2e+02 Score=32.37 Aligned_cols=206 Identities=15% Similarity=0.097 Sum_probs=115.2
Q ss_pred hHHHHHHh-ccCCHHHHHHHHHHHHHhccCcccccccccchHHHHHHHHhcCChHHHHHHHHHHHHhhcCCcchHHHHHc
Q 001733 479 LEPLMHHL-NEGSEEIQMEMASYLGEIVLGHDSKINVPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEA 557 (1019)
Q Consensus 479 i~~Lv~lL-~~~~~~~~~~aa~~L~~La~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~~~~l~~~ 557 (1019)
++.|+.-+ +..+++.+...+.+|..++.+.. ....-.+..|+.+...++...+--+.+.+..+-...+-. .
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~---~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~---f-- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKN---VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRH---F-- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCc---cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchH---H--
Confidence 45555534 45678999999999999998761 111235677777887777776666777777776554321 0
Q ss_pred CcHHHHHHHH--h--hhccC-CCChhHHHHHHHHHHHHHhcCCCcccccccccCcccchhhhHHHHHHHH-cCCCCHHHH
Q 001733 558 GIVQVMAEEM--F--IRIIH-NEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYML-KNSTPDELN 631 (1019)
Q Consensus 558 G~v~~Lv~lL--~--~~~~~-~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL-~~~~~~~v~ 631 (1019)
|.+..++..+ + ....+ ....+..-..+..+..++...+++ ...++..+..+| .. .++.++
T Consensus 74 ~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~-------------g~~ll~~ls~~L~~~-~~~~~~ 139 (234)
T PF12530_consen 74 PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH-------------GVDLLPLLSGCLNQS-CDEVAQ 139 (234)
T ss_pred HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh-------------HHHHHHHHHHHHhcc-ccHHHH
Confidence 3333333321 1 01111 111122233344577777765442 267888999999 56 889999
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCC-CHHHHHHHHHHHHHhCcC-CChhHHHHhhhcCCChhHhh
Q 001733 632 VHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNP-HDELAVAAIKLLTTLSPY-LGHTLVERLCKTRGQPENLI 709 (1019)
Q Consensus 632 ~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~-~~~vr~~A~~~L~~Ls~~-~~~~~~~~l~~~~g~i~~LV 709 (1019)
..++.+|..+|... +++.. .....+..-++.+ .+.+...-+.++..+... .+.+..+.+. ...+..|+
T Consensus 140 alale~l~~Lc~~~-----vvd~~---s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~--~~~l~~lW 209 (234)
T PF12530_consen 140 ALALEALAPLCEAE-----VVDFY---SAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELK--RQILQLLW 209 (234)
T ss_pred HHHHHHHHHHHHHh-----hccHH---HHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHH--HHHHHHHH
Confidence 99999999999522 22211 1222334434433 345555555555554422 1222222233 24566666
Q ss_pred cccCCCC
Q 001733 710 QCPTETI 716 (1019)
Q Consensus 710 ~lL~~~~ 716 (1019)
++....+
T Consensus 210 ~~~~~~~ 216 (234)
T PF12530_consen 210 EYTSSSD 216 (234)
T ss_pred hhccccc
Confidence 6666554
No 289
>PRK14707 hypothetical protein; Provisional
Probab=75.27 E-value=3.5e+02 Score=37.72 Aligned_cols=548 Identities=15% Similarity=0.109 Sum_probs=248.4
Q ss_pred HHHHHHHHHHHHHHhcccccchHHHhcCChHHHHHHhhc-CCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHh
Q 001733 323 RMVLEAIKDLQTVCQRKQYNKVQVRNVGVLPLLTKLLEY-KDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLL 401 (1019)
Q Consensus 323 ~~~~~Al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~s-~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL 401 (1019)
.....|+..|..+..+.+.-+..+. ...|..+++.|+. ++......|+..|.......++-+..+ +...+..++.-|
T Consensus 557 ~~C~~A~~~iA~~l~~~~~~~~~L~-aq~Vs~llNaLSKWP~~~aC~~Aa~~LA~~l~~~~~lr~~l-~~q~lan~lNAL 634 (2710)
T PRK14707 557 QLCAVAASGLAERLADEPQLPKDLH-RQGVVIVLNALSKWPDTAVCAEAVNALAERLVDEPDLRKEL-DPVDVTNVLNAL 634 (2710)
T ss_pred hHHHHHHHHHHHHhhcchhhHHhhh-hhHHHHHHHhhccCCCcHHHHHHHHHHHHHhccChhhhhhc-cHHHHHHHHhhh
Confidence 3455666666666555555444443 4447777777764 344444444444443322343333333 233455555555
Q ss_pred cC-CChhHHHHHHHHHH-HhccChhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHH-hcCCCCchHHHHhcCC
Q 001733 402 SS-SHRPVRHESLLLLL-ELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRN-LERNPDNIKCMAENGL 478 (1019)
Q Consensus 402 ~~-~~~~~r~~Aa~~L~-~Ls~~~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~n-Ls~~~~n~~~i~~~G~ 478 (1019)
+. .+.+.-+.|+..|. .+.........+. .-.|..+++-|+.-.+ .+..+.|+..|.. |...++-+ .-...-.
T Consensus 635 SKWP~s~~C~~Aa~rLA~rl~~~~~l~~~fn--aQ~vAn~LNALSKWPe-~e~Cr~Aa~~LA~rLa~~~~Lr-~al~pQ~ 710 (2710)
T PRK14707 635 SKWPGTEVCAEVARLLAGRLVGDRLLRKTFN--SLDVANALNALSKWPD-TPVCAAAAGGMAERLAADPGLR-KELNPVD 710 (2710)
T ss_pred hcCCCchHHHHHHHHHHHHhhhchhhHhhcc--hHHHHHHHHhhhcCCC-chHHHHHHHHHHHHHhcChhhH-hhcCHHH
Confidence 33 22333344444443 3333433344332 4456666666654443 3445555555543 33333322 2233344
Q ss_pred hHHHHHHhccCC-HHHHHHHHHHH-HHhccCcccccccccchHHHHHHHHhc-C-ChHHHHHHHHHHHHhhcCCcchHHH
Q 001733 479 LEPLMHHLNEGS-EEIQMEMASYL-GEIVLGHDSKINVPGRAASTLIRMVHS-G-NSLTRRIAFKALMQISSHHPSCKIL 554 (1019)
Q Consensus 479 i~~Lv~lL~~~~-~~~~~~aa~~L-~~La~~~~~~~~i~~~~i~~Lv~lL~~-~-~~~~~~~A~~aL~~Ls~~~~~~~~l 554 (1019)
|.-++.-|+.-+ ...-..++..| ..|...+.-+..+....+...+.-|+. . ++..+..|...-..|+.++.-+..+
T Consensus 711 vAN~LNALSKWP~~~~Cr~AA~~LA~rL~~~p~l~~a~~aQevANaLNALSKWPd~~~C~~AA~aLA~rLa~~~~Lr~aL 790 (2710)
T PRK14707 711 VANALNALSKWPRTPVCAAVASALAARVVAEPRLRKAFDAQQVATALNALSKWPDNQACAAAANTLAERQLREPDVRDVL 790 (2710)
T ss_pred HHHHHhhhhcCCCcHHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHhhCcchhhhc
Confidence 555666665422 22223333333 334444555544444456666665654 2 3344444444444666655544433
Q ss_pred HHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHH-HHhcCCCcccccccccCcccchhhhHHHHHHHHcCCCCHHHHHH
Q 001733 555 VEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILAN-ILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVH 633 (1019)
Q Consensus 555 ~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~-L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~ 633 (1019)
- .--+...+.-|+... . ....+.|+..|.. |+....-+ +.+..+++ .+.+.-|+-=++...-..
T Consensus 791 ~-pQ~vAn~LNALSKWP---e-~~~Cr~AA~~LA~rLa~dp~Lr---------~af~AQ~V-ANaLNALSKWPd~~~Cr~ 855 (2710)
T PRK14707 791 K-PREMTNALNALSKWP---D-TPACAAAASALAARVADDPRLR---------EAFDVQHV-ATVLNAMSKWPDNAVCAA 855 (2710)
T ss_pred C-HHHHHHHHHHhhcCC---C-chHHHHHHHHHHHHHhcChhHH---------HhcCHHHH-HHHHHHhccCCCchHHHH
Confidence 2 222334445455432 1 1333444444443 33221111 22233333 333333332144444455
Q ss_pred HHHHHHH-HhCCCCchHHHHHHHHHcCChHHHHHhhcCCCH-HHHHHHHHHHHHhCcCCChhHHHHhhhcCCChhHhhcc
Q 001733 634 LIRILQC-LTKSPKPMATIVSVIKETEASYSLLEVINNPHD-ELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQC 711 (1019)
Q Consensus 634 a~~aL~~-La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~-~vr~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~LV~l 711 (1019)
|+.+|.. |+..+ ..+..+.-++....|--|-.=++. ..+..|..+-..|.. +....+.+. +..|...++-
T Consensus 856 AA~aLA~RLa~e~----~LR~aL~~QevantLNALSKWPd~~~C~~AA~aLA~rL~~--d~~Lrqal~--aQ~VAN~LNA 927 (2710)
T PRK14707 856 AAGAMAERLADEP----ELRHTLTAHGVVIVLNALSKWPNVPVCAAAASALAERLAD--EPELRKALS--AHRVATALNA 927 (2710)
T ss_pred HHHHHHHHHhcCh----hhhhccchHHHHHHHhhhccCCCcHHHHHHHHHHHHHHhc--CHHHHhhcc--HHHHHHHHhh
Confidence 5555543 33322 223333222222223333333443 344444444444442 223333444 2344444444
Q ss_pred cCCCCcChHHHHHHHHHHhccCCCChhhHHHHHhCCChHHHHHHHHhhhccCCCccchhhhHHHHHHHHHH-HHhcCCCc
Q 001733 712 PTETIHITEKQAVSAKFLAKLPHQNLTLNLALSARNVVPTILQTINLIQRSGTRTSRYASAYLEGLIGILV-RFTTTLYE 790 (1019)
Q Consensus 712 L~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~~~~~~~e~a~~aL~-~lt~~~~~ 790 (1019)
|+.=...+.-+.++..+...|.. ++.+...|-..+ +...++-|. +-+.... ...++.+|. +++. +
T Consensus 928 LSKWPd~~~Cr~Aa~aLA~rLa~-d~~Lr~Aln~Q~-lsNtLNALS--------KWPd~~~-c~~AA~aLA~rL~~---~ 993 (2710)
T PRK14707 928 LSKWPDIPVCATAASALAERLSD-DPDLREALDASN-LPQVLNALS--------KWPDVPA-GGEVVDALAERLVD---E 993 (2710)
T ss_pred hccCCCchHHHHHHHHHHHHhcc-ChhhhhhccHHH-HHHHHhhhc--------cCCCchH-HHHHHHHHHHHHhc---c
Confidence 43222123445555555556655 555544432222 222222221 1111112 222333333 5553 6
Q ss_pred hhHHHHHHhCCchHHHHHHHhcCCcHHHHHHHHHHHhhhcccCCcCCCCCCcCCcccccccccCcccccCCCCCCCCCCC
Q 001733 791 PQILFLARTHNFTSVFTELLMKTSCDEVQKLAAIGLENLSSESINLSKPPQIKSKKFMKFFSLPKSLSVGSSKKKSVSLC 870 (1019)
Q Consensus 791 ~~~~~~~~~~g~i~~Lv~LL~~~~~~~vk~~AA~aL~nLs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 870 (1019)
+..++.+--+|+-..|-.|=+= ++...=+.||.+|+.--.+.+. .+.-|.
T Consensus 994 ~~LR~al~aQ~vAN~LNALSKW-Pd~~~Cr~AA~~LA~rLa~ep~-----------L~~amd------------------ 1043 (2710)
T PRK14707 994 PALRNALDPIGMANALNALSKW-LQMPVCAATVEALAARLSNDPG-----------LCKALS------------------ 1043 (2710)
T ss_pred HHHHhhcchHHHHHHHhhhhcC-CCchHHHHHHHHHHHHhccCHh-----------hhhhcc------------------
Confidence 7777666555665566555444 4444444667766543222211 111111
Q ss_pred cccCCccccCccchhhhccchHHHHhhhccCchhhHHHHHHHHHhhhccCcchhhHHHHHHhccchHHHHHHHhhcChhh
Q 001733 871 PVHRGACSSQNTFCLIDAKAVDRLLACLYHENVEVVEAALSALCTLLDEKVDVDKSVSMLSEVNAIQHVLNVVKEHRQEV 950 (1019)
Q Consensus 871 ~v~~~~cs~~~~~~Lv~~gai~~Lv~lL~~~d~~v~~~Al~AL~~L~~d~~~~~~~~~~i~~~~~i~~l~~lL~~~~~~~ 950 (1019)
-.+.-..|-.+-+.++...+..|..+|..=+.++..+ ...+ +..++.-.++-|..++++.
T Consensus 1044 ----------------aQ~lan~LNALSKWPde~~Cr~Aa~aLA~rL~~d~~L---r~Al-~aQ~vAN~LNaLSKWP~~~ 1103 (2710)
T PRK14707 1044 ----------------SQGLTTVLNALCKWPEMPVCLAAASALAERLSDDLVL---RNAL-DSQGFGNALNALSKWPDSP 1103 (2710)
T ss_pred ----------------hHHHHHHHHhhccCCCchhHHHHHHHHHHHhhccHHH---HHhh-chHHHHHHHHHHhcCCCcH
Confidence 1222333334445678888888888887755454322 2222 4566666777787788877
Q ss_pred HHHHHHHHHHHHH
Q 001733 951 LQQKSFWMIERFL 963 (1019)
Q Consensus 951 ~~~~A~~aL~~i~ 963 (1019)
.-..|++.|..-+
T Consensus 1104 ~Cr~Aa~~LA~rL 1116 (2710)
T PRK14707 1104 VCAAAASALAKRL 1116 (2710)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666664444
No 290
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=75.15 E-value=46 Score=41.60 Aligned_cols=150 Identities=9% Similarity=0.066 Sum_probs=98.2
Q ss_pred cCChHHHHHHhccCCHHHHHHHHHHHHHhccCccccccccc---chHHHHHHHHhcCChHHHHHHHHHHHHhhcCCcchH
Q 001733 476 NGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDSKINVPG---RAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCK 552 (1019)
Q Consensus 476 ~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~i~~---~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~~~ 552 (1019)
...+|.|++.....+...+.+-..+|.++-.+- -+..+.. ...|.|++-|.-.+..+|-.++.++.-+-...+.-.
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~v-P~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNV-PKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcC-CHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc
Confidence 368899999988666677777778887766532 2344433 247888899988888888888888877665544322
Q ss_pred HHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCcccccccccCcccchhhhHHHHHHHHcCCCCHHHHH
Q 001733 553 ILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNV 632 (1019)
Q Consensus 553 ~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~ 632 (1019)
.-.-.-.+|.++.+=.+++ ..+..+++.|..+|..|...-+.+.- ......++..|...|.. .-.-+|.
T Consensus 945 t~~~~Tlvp~lLsls~~~~--n~~~~VR~~ALqcL~aL~~~~P~~~l--------~~fr~~Vl~al~k~LdD-kKRlVR~ 1013 (1030)
T KOG1967|consen 945 TEHLSTLVPYLLSLSSDND--NNMMVVREDALQCLNALTRRLPTKSL--------LSFRPLVLRALIKILDD-KKRLVRK 1013 (1030)
T ss_pred hHHHhHHHHHHHhcCCCCC--cchhHHHHHHHHHHHHHhccCCCccc--------ccccHHHHHHhhhccCc-HHHHHHH
Confidence 1112335676766433322 22468899999999999885433321 12346788888888876 5566777
Q ss_pred HHHHH
Q 001733 633 HLIRI 637 (1019)
Q Consensus 633 ~a~~a 637 (1019)
.|+++
T Consensus 1014 eAv~t 1018 (1030)
T KOG1967|consen 1014 EAVDT 1018 (1030)
T ss_pred HHHHH
Confidence 66655
No 291
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=75.00 E-value=1.9 Score=44.29 Aligned_cols=53 Identities=17% Similarity=0.164 Sum_probs=40.9
Q ss_pred ccccccCcccCCCceec-CCCccccHHHHHHHHhhhccCCCCCCCC--CCCCCCCCCCc
Q 001733 233 TFYCPLTKEIMDDPVTI-ESGVTYERNAITAWFEKFETSGDIFCPT--TGKKLMSRGLN 288 (1019)
Q Consensus 233 ~~~Cpi~~~~m~dPv~~-~~g~t~~r~~I~~~~~~~~~~~~~~cP~--~~~~l~~~~l~ 288 (1019)
+.+||||.+-...|.+- .|.|-|||..|.+.+.-. ..+.||. |.+.+....+.
T Consensus 189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~---~trvcp~~~Csq~~~~~~~v 244 (275)
T COG5627 189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVE---CTRVCPRLICSQKEVVDPYV 244 (275)
T ss_pred cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCC---ceeecchhhcchheeccchh
Confidence 68999999999999876 899999999999998741 3567887 55554444443
No 292
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=74.89 E-value=1.1e+02 Score=37.90 Aligned_cols=237 Identities=17% Similarity=0.166 Sum_probs=123.8
Q ss_pred hHHHHHHhhcCCHHHHHHHHHHHHhhccCChhHHHH----HHhcC---CHHHHHHHhcCCChhHHHHHHHHHHHhccChh
Q 001733 352 LPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEM----IAETM---DISILIKLLSSSHRPVRHESLLLLLELSSTRS 424 (1019)
Q Consensus 352 i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~----I~~~g---~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~~~ 424 (1019)
+-.|+.+|..-+.+.......-+..-. .....|.. +...| ++..+.+++.++.... ..|+.+|..|.....
T Consensus 349 f~~Lv~~lr~l~~~~L~~l~~~~~~~~-~~~~~r~~~lDal~~aGT~~av~~i~~~I~~~~~~~-~ea~~~l~~l~~~~~ 426 (618)
T PF01347_consen 349 FSRLVRLLRTLSYEDLEELYKQLKSKS-KKEQARKIFLDALPQAGTNPAVKFIKDLIKSKKLTD-DEAAQLLASLPFHVR 426 (618)
T ss_dssp HHHHHHHHTTS-HHHHHHHHHHHTTS----HHHHHHHHHHHHHH-SHHHHHHHHHHHHTT-S-H-HHHHHHHHHHHHT--
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHhhcC
Confidence 555677777655555444444443321 12333433 33445 5777778887754433 335566666644320
Q ss_pred hhhhhhcccchHHHHHHhhhc--CCCChHHHHHHHHHHHHhc----CCC------CchHHHHhcCChHHHHHHhc----c
Q 001733 425 LCEKIGSIPGGILVLITFKFN--WSIDVFAAEIADQILRNLE----RNP------DNIKCMAENGLLEPLMHHLN----E 488 (1019)
Q Consensus 425 ~~~~i~~~~g~I~~LV~lL~~--~~~~~~~~~~A~~aL~nLs----~~~------~n~~~i~~~G~i~~Lv~lL~----~ 488 (1019)
. -....+..+..|+.. ...++.+...|.-++..|. ... .....-...-+++.|...|. .
T Consensus 427 ~-----Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 501 (618)
T PF01347_consen 427 R-----PTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSR 501 (618)
T ss_dssp --------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHT
T ss_pred C-----CCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhc
Confidence 0 012234444455431 1234556666666666663 331 11112222346677777665 4
Q ss_pred CCHHHHHHHHHHHHHhccCcccccccccchHHHHHHHHhcC---ChHHHHHHHHHHHHhhcCCcchHHHHHcCcHHHHHH
Q 001733 489 GSEEIQMEMASYLGEIVLGHDSKINVPGRAASTLIRMVHSG---NSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAE 565 (1019)
Q Consensus 489 ~~~~~~~~aa~~L~~La~~~~~~~~i~~~~i~~Lv~lL~~~---~~~~~~~A~~aL~~Ls~~~~~~~~l~~~G~v~~Lv~ 565 (1019)
++.+-+..++.+|+|+.. ...++.|..++... +..++-.|+.+|..+....+. -+.+.|+.
T Consensus 502 ~~~~~~~~~LkaLgN~g~---------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~-------~v~~~l~~ 565 (618)
T PF01347_consen 502 GDEEEKIVYLKALGNLGH---------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPE-------KVREILLP 565 (618)
T ss_dssp T-HHHHHHHHHHHHHHT----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HH-------HHHHHHHH
T ss_pred cCHHHHHHHHHHhhccCC---------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcH-------HHHHHHHH
Confidence 566778888999998854 23678888888776 567888999999988665543 24556677
Q ss_pred HHhhhccCCCChhHHHHHHHHHHHHHhcCCCcccccccccCcccchhhhHHHHHHHHcCCCCHHHHH
Q 001733 566 EMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNV 632 (1019)
Q Consensus 566 lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~ 632 (1019)
+..+.. .+.++|-.|..+|.. +.+ +...+..+...+....+..+..
T Consensus 566 I~~n~~---e~~EvRiaA~~~lm~---~~P---------------~~~~l~~i~~~l~~E~~~QV~s 611 (618)
T PF01347_consen 566 IFMNTT---EDPEVRIAAYLILMR---CNP---------------SPSVLQRIAQSLWNEPSNQVAS 611 (618)
T ss_dssp HHH-TT---S-HHHHHHHHHHHHH---T------------------HHHHHHHHHHHTT-S-HHHHH
T ss_pred HhcCCC---CChhHHHHHHHHHHh---cCC---------------CHHHHHHHHHHHhhCchHHHHH
Confidence 676554 345677666655444 211 1456777777776634454443
No 293
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=74.25 E-value=2.4e+02 Score=35.40 Aligned_cols=176 Identities=16% Similarity=0.204 Sum_probs=107.5
Q ss_pred HHHHhc-CCCCchHHHHhcCChHHHHHHhcc-CCHHHHHHHHHHHHHhccCccccccccc-chH--HHHHHHHhcCCh-H
Q 001733 459 ILRNLE-RNPDNIKCMAENGLLEPLMHHLNE-GSEEIQMEMASYLGEIVLGHDSKINVPG-RAA--STLIRMVHSGNS-L 532 (1019)
Q Consensus 459 aL~nLs-~~~~n~~~i~~~G~i~~Lv~lL~~-~~~~~~~~aa~~L~~La~~~~~~~~i~~-~~i--~~Lv~lL~~~~~-~ 532 (1019)
+|++.. .+++++..+.+.|++..+.+.+.. ...+++..+.+.|.+++...+.+..... ..+ ..+-.++..-+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 888887 567899999999999999999984 5678999999999999986655544422 111 233334443333 5
Q ss_pred HHHHHHHHHHHhhcCCcchHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCcccccccccCcccchh
Q 001733 533 TRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSD 612 (1019)
Q Consensus 533 ~~~~A~~aL~~Ls~~~~~~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~ 612 (1019)
.-..|+++|..+..+.+. ..+. ..+..+...+......-.... ......
T Consensus 574 rsY~~~siLa~ll~~~~~---~~~~--------------------~~r~~~~~~l~e~i~~~~~~~--------~~~~~~ 622 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEK---TTEC--------------------VFRNSVNELLVEAISRWLTSE--------IRVIND 622 (699)
T ss_pred HHHHHHHHHHHHHhCCCc---Cccc--------------------cchHHHHHHHHHHhhccCccc--------eeehhh
Confidence 666788888887766543 1111 222333333333222211111 011112
Q ss_pred hhHHH-HHHHHcCCCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhh
Q 001733 613 YVVYN-IIYMLKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVI 668 (1019)
Q Consensus 613 ~~i~~-Ll~LL~~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL 668 (1019)
..+.+ +..++..+..+..+.-|++++.+++...+ +..+.+.+.++++.+..+-
T Consensus 623 ~~f~~~~~~il~~s~~~g~~lWal~ti~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 676 (699)
T KOG3665|consen 623 RSFFPRILRILRLSKSDGSQLWALWTIKNVLEQNK---EYCKLVRESNGFELIENIR 676 (699)
T ss_pred hhcchhHHHHhcccCCCchHHHHHHHHHHHHHcCh---hhhhhhHhccchhhhhhcc
Confidence 22333 55666665678888888888888887553 2456677788887766543
No 294
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.48 E-value=2.1 Score=48.65 Aligned_cols=33 Identities=15% Similarity=0.420 Sum_probs=27.9
Q ss_pred ecCCCccccHHHHHHHHhhhccCCCCCCCCCCCCCCC
Q 001733 248 TIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMS 284 (1019)
Q Consensus 248 ~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~~ 284 (1019)
+.||.|.|-|.|+++|.+. -.-.||+|+.+|+.
T Consensus 603 ~tPC~HifH~~CL~~WMd~----ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 603 LTPCHHIFHRQCLLQWMDT----YKLICPVCRCPLPP 635 (636)
T ss_pred ccchHHHHHHHHHHHHHhh----hcccCCccCCCCCC
Confidence 4589999999999999996 34579999998864
No 295
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.36 E-value=1.4 Score=34.44 Aligned_cols=44 Identities=16% Similarity=0.085 Sum_probs=34.8
Q ss_pred ccccCcccCCCceecCCCc-cccHHHHHHHHhhhccCCCCCCCCCCCCC
Q 001733 235 YCPLTKEIMDDPVTIESGV-TYERNAITAWFEKFETSGDIFCPTTGKKL 282 (1019)
Q Consensus 235 ~Cpi~~~~m~dPv~~~~g~-t~~r~~I~~~~~~~~~~~~~~cP~~~~~l 282 (1019)
-|-||.|--.|.|+-.||| -.|-.|=.+-|.. .+..||.|+.+.
T Consensus 9 ECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~----~~g~CPiCRapi 53 (62)
T KOG4172|consen 9 ECTICYEHPVDSVLYTCGHMCMCYACGLRLKKA----LHGCCPICRAPI 53 (62)
T ss_pred ceeeeccCcchHHHHHcchHHhHHHHHHHHHHc----cCCcCcchhhHH
Confidence 4999999999999999998 4567776665655 577899998864
No 296
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=72.56 E-value=54 Score=38.88 Aligned_cols=120 Identities=17% Similarity=0.214 Sum_probs=84.9
Q ss_pred cCcccccccccchHHHHHHHHhcCChHHHHHHHHHHHHhhcCCcchHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHH
Q 001733 506 LGHDSKINVPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAA 585 (1019)
Q Consensus 506 ~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~ 585 (1019)
.+|++ ..++++.+..+++-+.+++..++..++.+|..++..-...+..+-.|.+..|.+-+.... ..++..|..
T Consensus 81 ~dpeg-~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE-----~~VR~eAv~ 154 (885)
T COG5218 81 DDPEG-EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDRE-----KAVRREAVK 154 (885)
T ss_pred CChhh-hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcch-----HHHHHHHHH
Confidence 34555 455566677777778888889999999999999876666666666777887777666543 478889998
Q ss_pred HHHHHHhcCCCcccccccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCc
Q 001733 586 ILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKP 647 (1019)
Q Consensus 586 ~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~La~~~~~ 647 (1019)
+|..+-.-..+.+ ..++..|+.++++.++.+++..| |.++.-++..
T Consensus 155 ~L~~~Qe~~~nee-------------n~~~n~l~~~vqnDPS~EVRr~a---llni~vdnsT 200 (885)
T COG5218 155 VLCYYQEMELNEE-------------NRIVNLLKDIVQNDPSDEVRRLA---LLNISVDNST 200 (885)
T ss_pred HHHHHHhccCChH-------------HHHHHHHHHHHhcCcHHHHHHHH---HHHeeeCCCc
Confidence 8888765443332 34566778888886778888764 5566555543
No 297
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=71.56 E-value=11 Score=33.94 Aligned_cols=75 Identities=19% Similarity=0.209 Sum_probs=56.4
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCC-chHHHHHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHhCcCCChh
Q 001733 615 VYNIIYMLKNSTPDELNVHLIRILQCLTKSPK-PMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTLSPYLGHT 693 (1019)
Q Consensus 615 i~~Ll~LL~~~~~~~v~~~a~~aL~~La~~~~-~~~~i~~~i~~~g~i~~Lv~LL~~~~~~vr~~A~~~L~~Ls~~~~~~ 693 (1019)
....+..|+. +.+.+|.+++..|..+..... . .+...+.+..+...|.++++-+-.+|.+.|..|++..++.
T Consensus 5 ~~~al~~L~d-p~~PvRa~gL~~L~~Li~~~~~~------~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~ 77 (92)
T PF10363_consen 5 LQEALSDLND-PLPPVRAHGLVLLRKLIESKSEP------VIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE 77 (92)
T ss_pred HHHHHHHccC-CCcchHHHHHHHHHHHHHcCCcc------hhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH
Confidence 4555666777 788899999999999988765 2 1222355667778999999999999999999999655544
Q ss_pred HHH
Q 001733 694 LVE 696 (1019)
Q Consensus 694 ~~~ 696 (1019)
+..
T Consensus 78 vl~ 80 (92)
T PF10363_consen 78 VLP 80 (92)
T ss_pred HHH
Confidence 333
No 298
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=71.45 E-value=14 Score=43.29 Aligned_cols=124 Identities=10% Similarity=0.035 Sum_probs=80.9
Q ss_pred cCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCcccccccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHH
Q 001733 557 AGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIR 636 (1019)
Q Consensus 557 ~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~ 636 (1019)
.|+|..|+..--+. ..+++++.|..+|.-+|... ...+...+++|..+.++.+|...+-
T Consensus 550 ~~vv~~lLh~avsD----~nDDVrRAAViAlGfvc~~D-----------------~~~lv~tvelLs~shN~hVR~g~Av 608 (926)
T COG5116 550 LGVVSTLLHYAVSD----GNDDVRRAAVIALGFVCCDD-----------------RDLLVGTVELLSESHNFHVRAGVAV 608 (926)
T ss_pred chhHhhhheeeccc----CchHHHHHHHHheeeeEecC-----------------cchhhHHHHHhhhccchhhhhhhHH
Confidence 35666665542222 23589999888877665543 3456677788877678899988888
Q ss_pred HHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHhCcCCChhHHHHhhhcCCChhHhhcccCC
Q 001733 637 ILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCPTE 714 (1019)
Q Consensus 637 aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~~vr~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~LV~lL~~ 714 (1019)
+|.-.|..... .-++..|-.|+.++++-+|..|+-++.-+.....++..-.+. +.++.+-+++.+
T Consensus 609 aLGiacag~G~----------~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~---~I~k~f~~vI~~ 673 (926)
T COG5116 609 ALGIACAGTGD----------KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVK---RIIKKFNRVIVD 673 (926)
T ss_pred HhhhhhcCCcc----------HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHH---HHHHHHHHHHhh
Confidence 88777765543 123556667888999999999999988877443433322221 345556565543
No 299
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=70.92 E-value=1.1e+02 Score=34.53 Aligned_cols=134 Identities=16% Similarity=0.078 Sum_probs=90.3
Q ss_pred hHHHHHHhhcCCHHHHHHHHHHHHhhcc-CChhHHHHHHh-cC-CHHHHHHHhcCCC-------------hhHHHHHHHH
Q 001733 352 LPLLTKLLEYKDRNVRCAAMELLRQLVV-EDDEGKEMIAE-TM-DISILIKLLSSSH-------------RPVRHESLLL 415 (1019)
Q Consensus 352 i~~Lv~lL~s~~~~~~~~Al~~L~~La~-~~~~~k~~I~~-~g-~i~~Lv~lL~~~~-------------~~~r~~Aa~~ 415 (1019)
++.+.+.|++........++..|..++. .+......+.. -+ ..+.+.+++.... +.+|.+.+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6778888888888888899999999986 44444444443 23 5667777774321 2788899988
Q ss_pred HHHhcc--ChhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCc-----hHHHHhcCChHHHHHHhc
Q 001733 416 LLELSS--TRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDN-----IKCMAENGLLEPLMHHLN 487 (1019)
Q Consensus 416 L~~Ls~--~~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n-----~~~i~~~G~i~~Lv~lL~ 487 (1019)
+..+.. ++..+..+-...+.+..+.+-|. .+++++....+.+|..=...+.. |..+.....+..|+.+..
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~--~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~ 214 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLR--KDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYS 214 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhccc--CCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhc
Confidence 887765 45677777776778888888884 57788888888888864333333 333334444444555433
No 300
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.59 E-value=2.2 Score=47.04 Aligned_cols=45 Identities=16% Similarity=0.205 Sum_probs=34.4
Q ss_pred CCCccccccCcccCCCceecCCCccccHHHHHHHHhhhccCCCCCCCCCCCCC
Q 001733 230 LYETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKL 282 (1019)
Q Consensus 230 ~~~~~~Cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l 282 (1019)
.|..-.|-||.+=.++-+.+||||+.| |+.- .+ ..+.||+|++..
T Consensus 302 ~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~c--s~----~l~~CPvCR~rI 346 (355)
T KOG1571|consen 302 LPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLC--SK----HLPQCPVCRQRI 346 (355)
T ss_pred cCCCCceEEecCCccceeeecCCcEEE--chHH--Hh----hCCCCchhHHHH
Confidence 444568999999999999999999998 5432 22 356799998753
No 301
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=70.46 E-value=3.6 Score=31.80 Aligned_cols=43 Identities=26% Similarity=0.357 Sum_probs=20.3
Q ss_pred cccCcccC--CCceec--CCCccccHHHHHHHHhhhccCCCCCCCCCCCCC
Q 001733 236 CPLTKEIM--DDPVTI--ESGVTYERNAITAWFEKFETSGDIFCPTTGKKL 282 (1019)
Q Consensus 236 Cpi~~~~m--~dPv~~--~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l 282 (1019)
||+|-+-| +|--+. +||+.+||.|..+-.+. +...||-|+++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~----~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILEN----EGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTS----S-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhc----cCCCCCCCCCCC
Confidence 78888777 222233 67999999997776654 456799998863
No 302
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=70.17 E-value=2.7e+02 Score=34.14 Aligned_cols=234 Identities=17% Similarity=0.135 Sum_probs=122.9
Q ss_pred ChHHHHHHhhcCCHHHHHHHHHHHHhhccCChhHH----HHHHhcC---CHHHHHHHhcCCChhHHHHHHHHHHHhccC-
Q 001733 351 VLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGK----EMIAETM---DISILIKLLSSSHRPVRHESLLLLLELSST- 422 (1019)
Q Consensus 351 ~i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k----~~I~~~g---~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~- 422 (1019)
.+-.|+++|..-+.+..+....-+.. .. ...| +.+...| ++..+...+.++.... ..|+.++..+...
T Consensus 312 ~f~~lv~~lR~~~~e~l~~l~~~~~~-~~--~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~-~ea~~~~~~~~~~~ 387 (574)
T smart00638 312 KFLRLVRLLRTLSEEQLEQLWRQLYE-KK--KKARRIFLDAVAQAGTPPALKFIKQWIKNKKITP-LEAAQLLAVLPHTA 387 (574)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh-CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHhh
Confidence 34556777776666555555544433 11 2233 3344455 5777777777765432 2233333332211
Q ss_pred hhhhhhhhcccchHHHHHHhhhcC--CCChHHHHHHHHHHHHhc----CCCCchHHHHhcCChHHHHHHhcc----CCHH
Q 001733 423 RSLCEKIGSIPGGILVLITFKFNW--SIDVFAAEIADQILRNLE----RNPDNIKCMAENGLLEPLMHHLNE----GSEE 492 (1019)
Q Consensus 423 ~~~~~~i~~~~g~I~~LV~lL~~~--~~~~~~~~~A~~aL~nLs----~~~~n~~~i~~~G~i~~Lv~lL~~----~~~~ 492 (1019)
.. -....+..+..++..+ ...+.+...|.-++.+|. .+...+...+....++.|.+.|.. ++.+
T Consensus 388 ~~------Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 461 (574)
T smart00638 388 RY------PTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEE 461 (574)
T ss_pred hc------CCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCch
Confidence 10 0133445555665421 224455566666666554 333322112223366777776643 3444
Q ss_pred HHHHHHHHHHHhccCcccccccccchHHHHHHHHh-c--CChHHHHHHHHHHHHhhcCCcchHHHHHcCcHHHHHHHHhh
Q 001733 493 IQMEMASYLGEIVLGHDSKINVPGRAASTLIRMVH-S--GNSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFI 569 (1019)
Q Consensus 493 ~~~~aa~~L~~La~~~~~~~~i~~~~i~~Lv~lL~-~--~~~~~~~~A~~aL~~Ls~~~~~~~~l~~~G~v~~Lv~lL~~ 569 (1019)
-+...+.+|+|+.. ...++.|...+. . -+..++..|+.+|..++...+. -+-+.|+.+..+
T Consensus 462 ~~~~~LkaLGN~g~---------~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~-------~v~~~l~~i~~n 525 (574)
T smart00638 462 EIQLYLKALGNAGH---------PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR-------KVQEVLLPIYLN 525 (574)
T ss_pred heeeHHHhhhccCC---------hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch-------HHHHHHHHHHcC
Confidence 45566777776643 125667777776 2 2357899999999998854332 244556676665
Q ss_pred hccCCCChhHHHHHHHHHHHHHhcCCCcccccccccCcccchhhhHHHHHHHHcCCCCHHHH
Q 001733 570 RIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELN 631 (1019)
Q Consensus 570 ~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~ 631 (1019)
.. .+.++|-.|..+|.. +.+ +...+..+...+....+..+.
T Consensus 526 ~~---e~~EvRiaA~~~lm~---t~P---------------~~~~l~~ia~~l~~E~~~QV~ 566 (574)
T smart00638 526 RA---EPPEVRMAAVLVLME---TKP---------------SVALLQRIAELLNKEPNLQVA 566 (574)
T ss_pred CC---CChHHHHHHHHHHHh---cCC---------------CHHHHHHHHHHHhhcCcHHHH
Confidence 43 345677666655443 211 134667777777663444444
No 303
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=69.20 E-value=1.1e+02 Score=36.92 Aligned_cols=166 Identities=15% Similarity=0.047 Sum_probs=98.5
Q ss_pred HHhhcCCHHHHHHHHHHHHhhccCChhHHHHHH---hcCCHHHHHHHhcCCChhHHHHHHHHHHHhccChhhhhhhhccc
Q 001733 357 KLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIA---ETMDISILIKLLSSSHRPVRHESLLLLLELSSTRSLCEKIGSIP 433 (1019)
Q Consensus 357 ~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~---~~g~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~~~~~~~i~~~~ 433 (1019)
.++..-..+.+--|+..|+.+.....-+-..+- ....+..++..+. +++..+..++.+|.|+-.++..++-+....
T Consensus 551 ~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~~ 629 (745)
T KOG0301|consen 551 AILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSRL 629 (745)
T ss_pred HHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 344445678888899999888755443332222 1235556666665 567778999999999998877777665432
Q ss_pred chHHHHHHhhhcCCCChHHHHHHHHHHHHhc--CCCCchHHHHhcCChHHHHHHhccC-----CHHHHHHHHHHHHHhcc
Q 001733 434 GGILVLITFKFNWSIDVFAAEIADQILRNLE--RNPDNIKCMAENGLLEPLMHHLNEG-----SEEIQMEMASYLGEIVL 506 (1019)
Q Consensus 434 g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs--~~~~n~~~i~~~G~i~~Lv~lL~~~-----~~~~~~~aa~~L~~La~ 506 (1019)
..|...+--.+ ...+..++..-+....|++ ...+|- +.|+.+.|...+... +-+.....+.+|.+|+.
T Consensus 630 ~~i~~~~~~~~-s~~~knl~ia~atlaln~sv~l~~~~~----~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t 704 (745)
T KOG0301|consen 630 ESILDPVIEAS-SLSNKNLQIALATLALNYSVLLIQDNE----QLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMT 704 (745)
T ss_pred HHHhhhhhhhh-cccchhHHHHHHHHHHHHHHHHHhccc----ccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcc
Confidence 22222222222 1223345555555555554 222221 146666666655432 22345566678888988
Q ss_pred Ccccccccccc-hHHHHHHHHhc
Q 001733 507 GHDSKINVPGR-AASTLIRMVHS 528 (1019)
Q Consensus 507 ~~~~~~~i~~~-~i~~Lv~lL~~ 528 (1019)
.+.+...++.. .+..++.-+++
T Consensus 705 ~~~~~~~~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 705 VDASVIQLAKNRSVDSIAKKLKE 727 (745)
T ss_pred ccHHHHHHHHhcCHHHHHHHHHH
Confidence 88777777764 57777777765
No 304
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.08 E-value=4.3 Score=45.10 Aligned_cols=62 Identities=24% Similarity=0.409 Sum_probs=46.0
Q ss_pred ccccCcccCCC------ceecCCCccccHHHHHHHHhhhccCCCCCCCCCCCCC--CC---CCCccCHhHHHHHHHH
Q 001733 235 YCPLTKEIMDD------PVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKL--MS---RGLNTNVALKTTIEEW 300 (1019)
Q Consensus 235 ~Cpi~~~~m~d------Pv~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l--~~---~~l~pn~~Lr~~I~~w 300 (1019)
-|-||.+-+.. |=++.||||+|-.|+.+.... +.-.||+|+.+. .. ..+..|+++-..|+..
T Consensus 5 ~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~----~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 5 ECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGN----SRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred ceeecCccccccCcccCCcccccCceehHhHHHHHhcC----ceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 46666666554 777889999999999998887 566789999873 22 3466777777777664
No 305
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=68.84 E-value=31 Score=34.63 Aligned_cols=111 Identities=15% Similarity=0.187 Sum_probs=75.2
Q ss_pred cchHHHHhhhccCchhhHHHHHHHHHhhhccCcchhhHHHHHHhccc--hHHHHHHHhhcChhhHHHHHHHHHHHHHhh-
Q 001733 889 KAVDRLLACLYHENVEVVEAALSALCTLLDEKVDVDKSVSMLSEVNA--IQHVLNVVKEHRQEVLQQKSFWMIERFLVK- 965 (1019)
Q Consensus 889 gai~~Lv~lL~~~d~~v~~~Al~AL~~L~~d~~~~~~~~~~i~~~~~--i~~l~~lL~~~~~~~~~~~A~~aL~~i~~~- 965 (1019)
.-+..+.++|++.++.-+-.++.-+..+..+. +-+.+.+.++ +..++.+|+......+.+.|...+.++|..
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~-----~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~ 99 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQC-----SWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLI 99 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 34777889999999999998888888877543 1345545454 566888998666688999999999999986
Q ss_pred -CCcccccccccc--ccchHHHHHHhhcCCchhhHHHHHHHHHh
Q 001733 966 -GGNKQASDISQD--RLLPATLVSAFHHGDVNTRQMAEKILRHL 1006 (1019)
Q Consensus 966 -~~~~~~~~~~~~--~~~~~~Lv~ll~~~~~~~~~~Aa~~L~~L 1006 (1019)
+-.+..+++... ......++.+++. ......+-.+|..|
T Consensus 100 ~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~l 141 (165)
T PF08167_consen 100 RGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATL 141 (165)
T ss_pred cCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHH
Confidence 446666665432 2333445555554 44555555555544
No 306
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=68.70 E-value=1.7e+02 Score=34.11 Aligned_cols=168 Identities=15% Similarity=0.104 Sum_probs=94.6
Q ss_pred CHHHHHHHHHHHHhhccCC-----hhHHHHHHhcCCHHHHHHHhcC-CChhHHHHHHHHHHHhccChhhhhhhhcccchH
Q 001733 363 DRNVRCAAMELLRQLVVED-----DEGKEMIAETMDISILIKLLSS-SHRPVRHESLLLLLELSSTRSLCEKIGSIPGGI 436 (1019)
Q Consensus 363 ~~~~~~~Al~~L~~La~~~-----~~~k~~I~~~g~i~~Lv~lL~~-~~~~~r~~Aa~~L~~Ls~~~~~~~~i~~~~g~I 436 (1019)
..+.++.|+.-|..+...+ +++... .+..++++|+. .+...+..|...|..++.+...+-.=. ..-+|
T Consensus 300 ~a~~~k~alsel~~m~~e~sfsvWeq~f~~-----iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~Ds-tE~ai 373 (516)
T KOG2956|consen 300 RASERKEALSELPKMLCEGSFSVWEQHFAE-----ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDS-TEIAI 373 (516)
T ss_pred chhHHHHHHHHHHHHHHccchhHHHHHHHH-----HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhch-HHHHH
Confidence 4566778887666655344 233333 35678888887 677889999999999988654333211 12345
Q ss_pred HHHHHhhhcCCCChHHHHHHH-HHHHHhcCCCCchHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC--cccccc
Q 001733 437 LVLITFKFNWSIDVFAAEIAD-QILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLG--HDSKIN 513 (1019)
Q Consensus 437 ~~LV~lL~~~~~~~~~~~~A~-~aL~nLs~~~~n~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~--~~~~~~ 513 (1019)
..+++.-. ++. .++...|. .++.-|+.+..-... ..+..++...++..--.++..+..|... .+.-..
T Consensus 374 ~K~Leaa~-ds~-~~v~~~Aeed~~~~las~~P~~~I-------~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ 444 (516)
T KOG2956|consen 374 CKVLEAAK-DSQ-DEVMRVAEEDCLTTLASHLPLQCI-------VNISPLILTADEPRAVAVIKMLTKLFERLSAEELLN 444 (516)
T ss_pred HHHHHHHh-CCc-hhHHHHHHHHHHHHHHhhCchhHH-------HHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHH
Confidence 55555442 223 33344443 445555554432211 1222333333333333444455555542 122222
Q ss_pred cccchHHHHHHHHhcCChHHHHHHHHHHHHhh
Q 001733 514 VPGRAASTLIRMVHSGNSLTRRIAFKALMQIS 545 (1019)
Q Consensus 514 i~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls 545 (1019)
+..+..|.+++--.+.+..+|+.|+.+|..+-
T Consensus 445 ll~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 445 LLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred hhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 33456788888888888899999999988765
No 307
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=68.46 E-value=12 Score=31.88 Aligned_cols=65 Identities=18% Similarity=0.114 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhccCccccccccc-chHHHHHHHHhc-CChHHHHHHHHHHHHhhcCCcchHHHHHcC
Q 001733 494 QMEMASYLGEIVLGHDSKINVPG-RAASTLIRMVHS-GNSLTRRIAFKALMQISSHHPSCKILVEAG 558 (1019)
Q Consensus 494 ~~~aa~~L~~La~~~~~~~~i~~-~~i~~Lv~lL~~-~~~~~~~~A~~aL~~Ls~~~~~~~~l~~~G 558 (1019)
.+.++++++++++.+.+-..+.+ +.++.++++..+ +...+|--|..+|.-+++..+..+.+-+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 45788999999999888887776 589999999885 457789999999999999887777776665
No 308
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.24 E-value=3.3e+02 Score=34.88 Aligned_cols=280 Identities=15% Similarity=0.149 Sum_probs=140.8
Q ss_pred HHHHHHHhcccccchHHHhcCChHHHHHHhhcCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHhcCCCh---
Q 001733 330 KDLQTVCQRKQYNKVQVRNVGVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSSHR--- 406 (1019)
Q Consensus 330 ~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL~~~~~--- 406 (1019)
..|..+.+.+.+|...+.++.++..++.++-+ .+-|-.-+..+..|-..++.. +...-+-.+|..|++|-.
T Consensus 664 DcLisllKnnteNqklFreanGvklilpflin--dehRSslLrivscLitvdpkq----vhhqelmalVdtLksgmvt~I 737 (2799)
T KOG1788|consen 664 DCLISLLKNNTENQKLFREANGVKLILPFLIN--DEHRSSLLRIVSCLITVDPKQ----VHHQELMALVDTLKSGMVTRI 737 (2799)
T ss_pred HHHHHHHhccchhhHHHHhhcCceEEEEeeec--hHHHHHHHHHHHHHhccCccc----ccHHHHHHHHHHHHhcceecc
Confidence 44677889999999999999888888887743 233333333333332222210 112234567788877421
Q ss_pred ---------hHHHHHHHHHHHhccCh-hhhhhhhcccchHHHHHHhhhc--------CCCChHHHHHHHHHHHHh-----
Q 001733 407 ---------PVRHESLLLLLELSSTR-SLCEKIGSIPGGILVLITFKFN--------WSIDVFAAEIADQILRNL----- 463 (1019)
Q Consensus 407 ---------~~r~~Aa~~L~~Ls~~~-~~~~~i~~~~g~I~~LV~lL~~--------~~~~~~~~~~A~~aL~nL----- 463 (1019)
........+|+.+-..+ ..+...+ ..||...|...|-. +.+|.-+-..-...|+.+
T Consensus 738 sgeqyklhfsllcdlmGalwrivgvngsaqrvFg-eatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlav 816 (2799)
T KOG1788|consen 738 SGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFG-EATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAV 816 (2799)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHccCchheeehh-ccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHH
Confidence 23444556677665444 3444444 47777777777530 111222222333444443
Q ss_pred cCCCCchHHHHhcCChHHHHHHhccCC---HHHHHHHHHHHHHhccCcccccccccchHHHHHHHHhcCChHHHHHHHHH
Q 001733 464 ERNPDNIKCMAENGLLEPLMHHLNEGS---EEIQMEMASYLGEIVLGHDSKINVPGRAASTLIRMVHSGNSLTRRIAFKA 540 (1019)
Q Consensus 464 s~~~~n~~~i~~~G~i~~Lv~lL~~~~---~~~~~~aa~~L~~La~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~A~~a 540 (1019)
|.+..|+..+-..=.-..+..+|.... -+.-...+-.|..++ . +.+-......--.|+..
T Consensus 817 cenasNrmklhtvITsqtftsLLresgllcvnler~viqlllEla-------------l----evlvppfLtSEsaAcae 879 (2799)
T KOG1788|consen 817 CENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELA-------------L----EVLVPPFLTSESAACAE 879 (2799)
T ss_pred hhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHH-------------H----HhhCCchhhhhHHHHHH
Confidence 345556655432222233444443211 000001111111111 1 11111111111112222
Q ss_pred HHHhh---------cC--CcchHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCcccccccccCccc
Q 001733 541 LMQIS---------SH--HPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTM 609 (1019)
Q Consensus 541 L~~Ls---------~~--~~~~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l 609 (1019)
+..+- +. .+.++.+..+|++..|+..+-... +..+-.-...|..++.-.+... ..+
T Consensus 880 VfelednifavntPsGqfnpdk~~iynagavRvlirslLlny-----pK~qlefl~lleSlaRaspfna--------ell 946 (2799)
T KOG1788|consen 880 VFELEDNIFAVNTPSGQFNPDKQKIYNAGAVRVLIRSLLLNY-----PKLQLEFLNLLESLARASPFNA--------ELL 946 (2799)
T ss_pred HhhcccceeeeccCCCCcCchHhhhcccchhHHHHHHHHhhC-----hHHHHHHHHHHHHHhhcCCCch--------hhh
Confidence 22221 11 123778899999999988766432 3666665666666665543322 345
Q ss_pred chhhhHHHHHHHHcC--CCCHHHHHHHHHHHHHHhCCCC
Q 001733 610 VSDYVVYNIIYMLKN--STPDELNVHLIRILQCLTKSPK 646 (1019)
Q Consensus 610 ~~~~~i~~Ll~LL~~--~~~~~v~~~a~~aL~~La~~~~ 646 (1019)
.+.|.++.|+..+.- +++...-.++..++..||..+.
T Consensus 947 tS~gcvellleIiypflsgsspfLshalkIvemLgayrl 985 (2799)
T KOG1788|consen 947 TSAGCVELLLEIIYPFLSGSSPFLSHALKIVEMLGAYRL 985 (2799)
T ss_pred hcccHHHHHHHHhhhhhcCCchHhhccHHHHHHHhhccC
Confidence 677888888877643 2556667777777777765544
No 309
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=67.16 E-value=6.2 Score=37.25 Aligned_cols=50 Identities=14% Similarity=0.219 Sum_probs=41.2
Q ss_pred cccccCcccCCCceec----CCCccccHHHHHHHHhhhccCCCCCCCCCCCCCCCC
Q 001733 234 FYCPLTKEIMDDPVTI----ESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSR 285 (1019)
Q Consensus 234 ~~Cpi~~~~m~dPv~~----~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~~~ 285 (1019)
..|-||+|.-.|+-.+ .||...|-.|-..-|+-+. -++.||+|+..+.+.
T Consensus 81 YeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~--~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 81 YECNICKETSAEERFLKPNECCGYSICNACYANLWKFCN--LYPVCPVCKTSFKSS 134 (140)
T ss_pred eeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcc--cCCCCCccccccccc
Confidence 5599999999997766 6799999999999888642 578999999887654
No 310
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=66.56 E-value=29 Score=37.87 Aligned_cols=114 Identities=22% Similarity=0.119 Sum_probs=77.6
Q ss_pred CCHHHHHHHHHHHHhhccCChhHHHHHHhc-C-CHHHHHHHhcCC----ChhHHHHHHHHHHHhccChhhhh-hhhcccc
Q 001733 362 KDRNVRCAAMELLRQLVVEDDEGKEMIAET-M-DISILIKLLSSS----HRPVRHESLLLLLELSSTRSLCE-KIGSIPG 434 (1019)
Q Consensus 362 ~~~~~~~~Al~~L~~La~~~~~~k~~I~~~-g-~i~~Lv~lL~~~----~~~~r~~Aa~~L~~Ls~~~~~~~-~i~~~~g 434 (1019)
..+..+.-+++.++|+- .++..+..+... + .|...+..+... +..+|..++.+++|+|..--... .--....
T Consensus 122 ~~~~~~ml~lR~l~NlF-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ 200 (268)
T PF08324_consen 122 SPPANQMLALRLLANLF-SHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSE 200 (268)
T ss_dssp SSHHHHHHHHHHHHHHT-TSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHH
T ss_pred CcHHHHHHHHHHHHHhh-CCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 46788889999999997 677777777653 3 455555545444 67899999999999986321111 0000122
Q ss_pred hHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHHHhc
Q 001733 435 GILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAEN 476 (1019)
Q Consensus 435 ~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~ 476 (1019)
.+..+++.+.....|+++...++.+|.+|...+.....+.+.
T Consensus 201 ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~ 242 (268)
T PF08324_consen 201 LLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKS 242 (268)
T ss_dssp HHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCC
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHH
Confidence 455666644434568999999999999999777776666664
No 311
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.20 E-value=2.9e+02 Score=34.61 Aligned_cols=186 Identities=18% Similarity=0.191 Sum_probs=92.3
Q ss_pred CCCCCCccCHhHHHHHHHHHHHchhhhhhhhhhhhcccCCHHHHHHHHHHHHHHHhcccccchHHHhcCChHHHH-HHhh
Q 001733 282 LMSRGLNTNVALKTTIEEWKDRNDAERIKVSRAALSLAGSDRMVLEAIKDLQTVCQRKQYNKVQVRNVGVLPLLT-KLLE 360 (1019)
Q Consensus 282 l~~~~l~pn~~Lr~~I~~w~~~~~~~~~~~~~~~l~~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~i~~Lv-~lL~ 360 (1019)
++.....||+.+|..-++..+.++.+-+ +.-++.+..+..+..|+.-++.||+..+.--. |++..-+ ++|.
T Consensus 339 i~e~VvlpN~~lR~eDeElFED~pleYi---RRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt-----~v~~~~v~~~l~ 410 (960)
T KOG1992|consen 339 ICEKVVLPNLILREEDEELFEDNPLEYI---RRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVT-----GVFSSEVQRLLD 410 (960)
T ss_pred HHHhhcccccccchhhHHHhccCHHHHH---HHhcccCCcchhHHHHHHHHHHHHHHhcchhH-----HHHHHHHHHHHH
Confidence 3455667888888877777777654433 22343333344466677778888887643221 2222222 2343
Q ss_pred ------cCCHHHHHHHHHHHHhhccCChhHHHHHHhc----CCHHH----HH-HHhc---CCChhHHHHHHHHHHHhccC
Q 001733 361 ------YKDRNVRCAAMELLRQLVVEDDEGKEMIAET----MDISI----LI-KLLS---SSHRPVRHESLLLLLELSST 422 (1019)
Q Consensus 361 ------s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~----g~i~~----Lv-~lL~---~~~~~~r~~Aa~~L~~Ls~~ 422 (1019)
|.+..-+..|......++......+.-+... +.+.. +. .+++ ...+-++..|...+.-- .+
T Consensus 411 ~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~F-R~ 489 (960)
T KOG1992|consen 411 QYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTF-RN 489 (960)
T ss_pred HhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceeeee-cc
Confidence 3455555555555555553322222222111 11111 11 2222 11223333332222111 11
Q ss_pred hhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCc-hHHHHhcCChHH
Q 001733 423 RSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDN-IKCMAENGLLEP 481 (1019)
Q Consensus 423 ~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n-~~~i~~~G~i~~ 481 (1019)
.-.++.+ ...+|.+++.|. ++...+-..|+.++-.+-...++ ...+..++-+++
T Consensus 490 ql~~~~l---m~~~p~li~~L~--a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap 544 (960)
T KOG1992|consen 490 QLGKEHL---MALLPRLIRFLE--AESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAP 544 (960)
T ss_pred cCChHHH---HHHHHHHHHhcc--CcchHHHHHHHHHHHhccccccCccccccchhhcch
Confidence 1122222 347899999994 66778889999999888644443 555555554444
No 312
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.98 E-value=1.3e+02 Score=35.34 Aligned_cols=145 Identities=18% Similarity=0.068 Sum_probs=84.0
Q ss_pred hcCChHHHHHHh----hcCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHhcC-CChhHHHHHHHHHHHhccC
Q 001733 348 NVGVLPLLTKLL----EYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSS-SHRPVRHESLLLLLELSST 422 (1019)
Q Consensus 348 ~~g~i~~Lv~lL----~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL~~-~~~~~r~~Aa~~L~~Ls~~ 422 (1019)
+.|....++..| .+++...+..|+..|.+.+..-++-..... .-.+..++.-|.+ .+.+++..|..+|..++..
T Consensus 252 ~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~-~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~ 330 (533)
T KOG2032|consen 252 KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHK-TTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEK 330 (533)
T ss_pred ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhH-HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh
Confidence 445544444433 356778899999999999866343322222 2345666665654 4568899999988888765
Q ss_pred hhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHH--HHh--cCChHHHHHHhccCCHHHHH
Q 001733 423 RSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKC--MAE--NGLLEPLMHHLNEGSEEIQM 495 (1019)
Q Consensus 423 ~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~--i~~--~G~i~~Lv~lL~~~~~~~~~ 495 (1019)
..+...-.-.....-.+..+. .+++++.+-.|..++..|+.......+ +.+ .+...+|+-.|.+.++.+-.
T Consensus 331 ~~~~~l~~~~l~ialrlR~l~--~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ 405 (533)
T KOG2032|consen 331 ASNDDLESYLLNIALRLRTLF--DSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVAR 405 (533)
T ss_pred hhhcchhhhchhHHHHHHHHH--HhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHH
Confidence 444432211122233344444 467788888888887777754333322 221 13444666667776665443
No 313
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=65.97 E-value=1.9e+02 Score=36.77 Aligned_cols=180 Identities=14% Similarity=0.190 Sum_probs=104.0
Q ss_pred CCChhHHHHHHHHHHHhccChhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCC-CCchHHHHhcCChHH
Q 001733 403 SSHRPVRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERN-PDNIKCMAENGLLEP 481 (1019)
Q Consensus 403 ~~~~~~r~~Aa~~L~~Ls~~~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~-~~n~~~i~~~G~i~~ 481 (1019)
+.+-.-|..|+.-+........ ....-...|-+..+.+... ...+..+...|+..|-.++.. ...-.. ...+..|.
T Consensus 264 s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~-kDaN~~v~~~aa~~l~~ia~~lr~~~~~-~~~~v~p~ 340 (815)
T KOG1820|consen 264 SKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRL-KDANINVVMLAAQILELIAKKLRPLFRK-YAKNVFPS 340 (815)
T ss_pred ccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhc-cCcchhHHHHHHHHHHHHHHhcchhhHH-HHHhhcch
Confidence 3344556666666655544433 2211112334444444432 334556677777778777642 222122 23367889
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhccCcccccccccchHHHHHHHHhcCChHHHHHHHHHHHHhhcCCcchHHHHHcCcHH
Q 001733 482 LMHHLNEGSEEIQMEMASYLGEIVLGHDSKINVPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIVQ 561 (1019)
Q Consensus 482 Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~~~~l~~~G~v~ 561 (1019)
|+..+.+....+++.+..++-..+.. .-....++.+..++++++|.++..+...+-..-...+. .....+.+.
T Consensus 341 lld~lkekk~~l~d~l~~~~d~~~ns-----~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~--~~~~~~t~~ 413 (815)
T KOG1820|consen 341 LLDRLKEKKSELRDALLKALDAILNS-----TPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP--KTVEKETVK 413 (815)
T ss_pred HHHHhhhccHHHHHHHHHHHHHHHhc-----ccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC--cCcchhhHH
Confidence 99999888888888777777655430 01123578888999999999999988777665543322 222334444
Q ss_pred HHHHHHhhhccCCCChhHHHHHHHHHHHHHhc
Q 001733 562 VMAEEMFIRIIHNEPMNSKEEAAAILANILES 593 (1019)
Q Consensus 562 ~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~ 593 (1019)
.++..+-.+..| ....++..|..++..+...
T Consensus 414 ~l~p~~~~~~~D-~~~~VR~Aa~e~~~~v~k~ 444 (815)
T KOG1820|consen 414 TLVPHLIKHIND-TDKDVRKAALEAVAAVMKV 444 (815)
T ss_pred HHhHHHhhhccC-CcHHHHHHHHHHHHHHHHH
Confidence 444444333222 2358888888888776553
No 314
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=64.73 E-value=2.8e+02 Score=33.91 Aligned_cols=174 Identities=16% Similarity=0.109 Sum_probs=95.4
Q ss_pred ccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCC-CCchHHHHhcCChHHHHHHhccC----CHHHHHHHHHHHHHhcc
Q 001733 432 IPGGILVLITFKFNWSIDVFAAEIADQILRNLERN-PDNIKCMAENGLLEPLMHHLNEG----SEEIQMEMASYLGEIVL 506 (1019)
Q Consensus 432 ~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~-~~n~~~i~~~G~i~~Lv~lL~~~----~~~~~~~aa~~L~~La~ 506 (1019)
+..++..+.+.+.++.-.+. .|+.++..+... ...-. ..+..+..++.+. .+.++..+.-+++.|+.
T Consensus 355 T~~a~~~i~~~i~~~~~~~~---ea~~~~~~~~~~~~~Pt~-----~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~ 426 (574)
T smart00638 355 TPPALKFIKQWIKNKKITPL---EAAQLLAVLPHTARYPTE-----EILKALFELAESPEVQKQPYLRESALLAYGSLVR 426 (574)
T ss_pred CHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHhhhcCCH-----HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHH
Confidence 46688888888864333322 233333332211 11111 2345566666542 34555555555655543
Q ss_pred ----Ccccc-cccccchHHHHHHHHhc----CChHHHHHHHHHHHHhhcCCcchHHHHHcCcHHHHHHHHhhhccCCCCh
Q 001733 507 ----GHDSK-INVPGRAASTLIRMVHS----GNSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPM 577 (1019)
Q Consensus 507 ----~~~~~-~~i~~~~i~~Lv~lL~~----~~~~~~~~A~~aL~~Ls~~~~~~~~l~~~G~v~~Lv~lL~~~~~~~~~~ 577 (1019)
+...+ ..+.+..++.|.+.|.. ++..-+..++.+|+|+.... .++.|..++... ...+.
T Consensus 427 ~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~----------~i~~l~~~l~~~--~~~~~ 494 (574)
T smart00638 427 RYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPS----------SIKVLEPYLEGA--EPLST 494 (574)
T ss_pred HHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChh----------HHHHHHHhcCCC--CCCCH
Confidence 33222 22334466777766654 34445666888888877642 344455544411 12346
Q ss_pred hHHHHHHHHHHHHHhcCCCcccccccccCcccchhhhHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Q 001733 578 NSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKN-STPDELNVHLIRILQCL 641 (1019)
Q Consensus 578 ~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~-~~~~~v~~~a~~aL~~L 641 (1019)
.++..|.++|..++.... ..+-+.|+.++.+ ..++++|..|.-+|...
T Consensus 495 ~iR~~Av~Alr~~a~~~p----------------~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t 543 (574)
T smart00638 495 FIRLAAILALRNLAKRDP----------------RKVQEVLLPIYLNRAEPPEVRMAAVLVLMET 543 (574)
T ss_pred HHHHHHHHHHHHHHHhCc----------------hHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Confidence 889999999998876543 2345566777665 25677887766665443
No 315
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=64.43 E-value=64 Score=32.36 Aligned_cols=110 Identities=17% Similarity=0.101 Sum_probs=67.7
Q ss_pred CHHHHHHHhcCCChhHHHHHHHHHHHhccChhhhhhh-hcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcC----CC
Q 001733 393 DISILIKLLSSSHRPVRHESLLLLLELSSTRSLCEKI-GSIPGGILVLITFKFNWSIDVFAAEIADQILRNLER----NP 467 (1019)
Q Consensus 393 ~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~~~~~~~i-~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~----~~ 467 (1019)
.+..+..+|+++++..|-.++.++.-.+.... .+.+ ....-.+..|+.+|+. .+++.+.+.++.+|..+.. .+
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~-~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEK-PDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 45567788888888888877777777665432 1222 1223478888889973 5667788888888877753 34
Q ss_pred CchHHHHhc---CChHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 001733 468 DNIKCMAEN---GLLEPLMHHLNEGSEEIQMEMASYLGEIVL 506 (1019)
Q Consensus 468 ~n~~~i~~~---G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~ 506 (1019)
+-.+++.-. +.++.++.++.. ......++.+|..+-.
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLP 143 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 434444322 344455555543 3455666666666544
No 316
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=63.79 E-value=14 Score=31.49 Aligned_cols=59 Identities=15% Similarity=0.117 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhcCCCcccccccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCc
Q 001733 580 KEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKP 647 (1019)
Q Consensus 580 ~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~La~~~~~ 647 (1019)
.+.|.+++.+++.+..+. ..+...++++.++++...++...+|-.|..+|.-+++....
T Consensus 4 lKaaLWaighIgss~~G~---------~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G 62 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGI---------QLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEG 62 (73)
T ss_pred HHHHHHHHHhHhcChHHH---------HHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHH
Confidence 367889999998876543 33455789999999999878899999999999999886654
No 317
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=63.18 E-value=57 Score=34.01 Aligned_cols=145 Identities=17% Similarity=0.140 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHhccCcccccccccch----HHHHHHHHhcC--ChHHHHHHHHHHHHhhcCCcc--hHHHHHcCcHHHH
Q 001733 492 EIQMEMASYLGEIVLGHDSKINVPGRA----ASTLIRMVHSG--NSLTRRIAFKALMQISSHHPS--CKILVEAGIVQVM 563 (1019)
Q Consensus 492 ~~~~~aa~~L~~La~~~~~~~~i~~~~----i~~Lv~lL~~~--~~~~~~~A~~aL~~Ls~~~~~--~~~l~~~G~v~~L 563 (1019)
.-..+++..|.-++++|+.|..+.+.- +-+.+.+..+. ..-.+-.+++++..|..+++. ...+....+||.+
T Consensus 115 nRvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLc 194 (315)
T COG5209 115 NRVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLC 194 (315)
T ss_pred hHHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHH
Confidence 345678888889999999999887742 33333344332 244778899999999988754 5666778999999
Q ss_pred HHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCcccccccccCcccch----hhhHHHHHHHHcCCCCHHHHHHHHHHHH
Q 001733 564 AEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVS----DYVVYNIIYMLKNSTPDELNVHLIRILQ 639 (1019)
Q Consensus 564 v~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~----~~~i~~Ll~LL~~~~~~~v~~~a~~aL~ 639 (1019)
+.++...+ .-.|..|.-++..+...+.+-+-++ +.+.. ..++..++.-+-+.++..+-.+++++-.
T Consensus 195 LrIme~gS-----ElSktvaifI~qkil~dDvGLqYiC-----qT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYl 264 (315)
T COG5209 195 LRIMELGS-----ELSKTVAIFIFQKILGDDVGLQYIC-----QTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYL 264 (315)
T ss_pred HHHHHhhh-----HHHHHHHHHHHHHHhccchhHHHHH-----HHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHhe
Confidence 99887542 3456667776666655544332111 11111 1222333322222256667777788777
Q ss_pred HHhCCCC
Q 001733 640 CLTKSPK 646 (1019)
Q Consensus 640 ~La~~~~ 646 (1019)
.|+..+.
T Consensus 265 RLsd~p~ 271 (315)
T COG5209 265 RLSDKPH 271 (315)
T ss_pred eecCCHh
Confidence 7776554
No 318
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=62.60 E-value=1.6e+02 Score=33.17 Aligned_cols=164 Identities=13% Similarity=0.110 Sum_probs=103.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhhc-CCcc-hHHHHH-cC-cHHHHHHHHhhhccCCCC--------hhHHHHHHHH
Q 001733 519 ASTLIRMVHSGNSLTRRIAFKALMQISS-HHPS-CKILVE-AG-IVQVMAEEMFIRIIHNEP--------MNSKEEAAAI 586 (1019)
Q Consensus 519 i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~-~~~~-~~~l~~-~G-~v~~Lv~lL~~~~~~~~~--------~~~~~~A~~~ 586 (1019)
+..+.+.|.++.......+++.|..+.. ++.. ...+.+ .. -.+.|..++......... ..+|......
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 5566666766666777788888888877 4322 333333 22 244555555432211111 1666666666
Q ss_pred HHHHHhcCCCcccccccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHH-HhCCCCchHHHHHHHHHcCChHHHH
Q 001733 587 LANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQC-LTKSPKPMATIVSVIKETEASYSLL 665 (1019)
Q Consensus 587 L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~-La~~~~~~~~i~~~i~~~g~i~~Lv 665 (1019)
+..+.......- ....+...+.+..+++-|.. .++++-...+.+|.. +...+.-....+..+.....+..|.
T Consensus 138 ~Lsfl~~~~~~~------~~~lL~~~~~~~~l~k~l~~-D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~ 210 (330)
T PF11707_consen 138 WLSFLSSGDPEL------KRDLLSQKKLMSALFKGLRK-DPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLA 210 (330)
T ss_pred HHHHHccCCHHH------HHHHHHcCchHHHHHhcccC-CCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHH
Confidence 666655432211 11345666778888888888 888888888888884 5555543344445666667888888
Q ss_pred HhhcCCCH----HHHHHHHHHHHHhCcC
Q 001733 666 EVINNPHD----ELAVAAIKLLTTLSPY 689 (1019)
Q Consensus 666 ~LL~~~~~----~vr~~A~~~L~~Ls~~ 689 (1019)
.+....++ .++..+-..|..+|-.
T Consensus 211 ~Ly~~~~~~~~~~~~~~vh~fL~~lcT~ 238 (330)
T PF11707_consen 211 SLYSRDGEDEKSSVADLVHEFLLALCTD 238 (330)
T ss_pred HHhcccCCcccchHHHHHHHHHHHHhcC
Confidence 88887777 8999999999888843
No 319
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=61.34 E-value=93 Score=41.21 Aligned_cols=106 Identities=14% Similarity=0.191 Sum_probs=76.5
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHHHHhhcCCcc--hHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCC
Q 001733 518 AASTLIRMVHSGNSLTRRIAFKALMQISSHHPS--CKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGL 595 (1019)
Q Consensus 518 ~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~--~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~ 595 (1019)
.+..++..|......+|..|+++|..+..-++. ....++.|+...+.+ + ...+|+.|...+.....+.
T Consensus 817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~D---s------sasVREAaldLvGrfvl~~- 886 (1692)
T KOG1020|consen 817 YLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLND---S------SASVREAALDLVGRFVLSI- 886 (1692)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhcc---c------hhHHHHHHHHHHhhhhhcc-
Confidence 467777888877889999999999999987765 445566777666533 2 2489999999887765543
Q ss_pred CcccccccccCcccchhhhHHHHHHHHcC---CCCHHHHHHHHHHHHHHhCCCCchH
Q 001733 596 EHHSLQVNSHGHTMVSDYVVYNIIYMLKN---STPDELNVHLIRILQCLTKSPKPMA 649 (1019)
Q Consensus 596 ~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~---~~~~~v~~~a~~aL~~La~~~~~~~ 649 (1019)
...++++-+.+.. .++-.||.++++.+.-+|...+...
T Consensus 887 ----------------~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~ 927 (1692)
T KOG1020|consen 887 ----------------PELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFS 927 (1692)
T ss_pred ----------------HHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChh
Confidence 2334444444432 1788999999999999998766543
No 320
>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.
Probab=60.60 E-value=6.6 Score=35.81 Aligned_cols=51 Identities=20% Similarity=0.389 Sum_probs=31.5
Q ss_pred CCCccccccCcccCCCceecCCC------ccccHHHHHHHHhhhccCCCCCCCCCCCCCCCC
Q 001733 230 LYETFYCPLTKEIMDDPVTIESG------VTYERNAITAWFEKFETSGDIFCPTTGKKLMSR 285 (1019)
Q Consensus 230 ~~~~~~Cpi~~~~m~dPv~~~~g------~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~~~ 285 (1019)
+.+.+.||||+++-+.=|.+-+. .-|+..++.+-..+ +. .=|.+|++++..
T Consensus 37 ~ee~L~CPITL~iPe~GVFvkNs~~S~VC~LyD~~Al~~Lv~~----~~-~HPLSREpit~s 93 (113)
T PF06416_consen 37 PEEHLTCPITLCIPENGVFVKNSSGSDVCSLYDKEALSRLVRE----GA-PHPLSREPITPS 93 (113)
T ss_dssp -CHHH-BTTTTC--SCEEEEECTTTSSEEEEEEHHHHHHHHHC----T----TTT-----TT
T ss_pred CHHHcCCCeEEeecCCceEEecCCCCccceecCHHHHHHHHHc----CC-CCCCccCCCChh
Confidence 55789999999999999988332 36999999999887 22 238888887654
No 321
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=59.46 E-value=8 Score=42.63 Aligned_cols=60 Identities=17% Similarity=0.184 Sum_probs=44.9
Q ss_pred CCCCccccccCcccCCCceec-CCCccccHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCccCHhHHHHHHH
Q 001733 229 PLYETFYCPLTKEIMDDPVTI-ESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVALKTTIEE 299 (1019)
Q Consensus 229 ~~~~~~~Cpi~~~~m~dPv~~-~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~~~~l~pn~~Lr~~I~~ 299 (1019)
...+-+-||||.+.|.-|..= +.||..|-+|=.+ -...||.|+.++.+ +.++++..+++.
T Consensus 44 ~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~--------~~~~CP~Cr~~~g~---~R~~amEkV~e~ 104 (299)
T KOG3002|consen 44 LDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTK--------VSNKCPTCRLPIGN---IRCRAMEKVAEA 104 (299)
T ss_pred cchhhccCchhhccCcccceecCCCcEehhhhhhh--------hcccCCcccccccc---HHHHHHHHHHHh
Confidence 466778999999999999876 6699999988432 34569999998764 245555555554
No 322
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=58.57 E-value=7 Score=49.69 Aligned_cols=60 Identities=27% Similarity=0.424 Sum_probs=37.7
Q ss_pred CCCCCccccCchhhhccccCCCCccccccCc--ccCCCceecCCCccccHHHHHHHHhhhccCCCCCCCCCCCCCCCC
Q 001733 210 SDHSTSRSISLPKVAQYIEPLYETFYCPLTK--EIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSR 285 (1019)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~Cpi~~--~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~~~ 285 (1019)
+.+.|+++-..+-....+-|+|.+.+||-|+ |.+.|+-+ .+| | +- ..++||.|+.+|...
T Consensus 891 RGSVGSSlVAtm~gITEVNPL~PHY~Cp~Cky~Ef~~d~sv-gsG--f---------DL----pdK~CPkCg~pl~kD 952 (1444)
T COG2176 891 RGSVGSSLVATMIGITEVNPLPPHYLCPECKYSEFIDDGSV-GSG--F---------DL----PDKDCPKCGTPLKKD 952 (1444)
T ss_pred CCcchHHHHHHhhcccccCCCCccccCCCCceeeeecCCCc-CCC--C---------CC----CCCCCCcCCCccccC
Confidence 3333444433333334455799999999997 56777743 444 2 11 467999999998653
No 323
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=57.60 E-value=1.3e+02 Score=37.25 Aligned_cols=181 Identities=17% Similarity=0.133 Sum_probs=93.6
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHHHHhhcCC--cchHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCC
Q 001733 518 AASTLIRMVHSGNSLTRRIAFKALMQISSHH--PSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGL 595 (1019)
Q Consensus 518 ~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~--~~~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~ 595 (1019)
++..+.+++.++.....+ |...|..|.... ++.. .+..+.+++...... ....++..|.-.+..+.....
T Consensus 396 av~~i~~~I~~~~~~~~e-a~~~l~~l~~~~~~Pt~e------~l~~l~~L~~~~~~~-~~~~l~~ta~L~~~~lv~~~c 467 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLTDDE-AAQLLASLPFHVRRPTEE------LLKELFELAKSPKVK-NSPYLRETALLSLGSLVHKYC 467 (618)
T ss_dssp HHHHHHHHHHTT-S-HHH-HHHHHHHHHHT-----HH------HHHHHHHHHT-HHHH-T-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHH-HHHHHHHHHhhcCCCCHH------HHHHHHHHHhCcccc-CChhHHHHHHHHHHHHhCcee
Confidence 466677777764333222 445555554332 2211 233344444432110 012455556655665544321
Q ss_pred Ccc---cccccccCcccchhhhHHHHHHHHcC---CCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhc
Q 001733 596 EHH---SLQVNSHGHTMVSDYVVYNIIYMLKN---STPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVIN 669 (1019)
Q Consensus 596 ~~~---~~~v~~~g~~l~~~~~i~~Ll~LL~~---~~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~ 669 (1019)
... ... + .......+.+++.|...+.. ..+..-+..++++|.|+.. ...++.|.+++.
T Consensus 468 ~~~~~~~~~-~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--------------~~~i~~l~~~i~ 531 (618)
T PF01347_consen 468 VNSDSAEFC-D-PCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH--------------PESIPVLLPYIE 531 (618)
T ss_dssp TT-------------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---------------GGGHHHHHTTST
T ss_pred ecccccccc-c-ccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--------------chhhHHHHhHhh
Confidence 110 000 0 00112334556666666652 1566788888999998853 134667778887
Q ss_pred CC---CHHHHHHHHHHHHHhCcCCChhHHHHhhhcCCChhHhhcccCCCCcChHHHHHHHHHHhcc
Q 001733 670 NP---HDELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCPTETIHITEKQAVSAKFLAKL 732 (1019)
Q Consensus 670 ~~---~~~vr~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~LV~lL~~~~~~~~~~~~A~~~L~nL 732 (1019)
+. ...+|..|+++|+.+....++.+ .+.|..++.+...+.++|.+|..+|-..
T Consensus 532 ~~~~~~~~~R~~Ai~Alr~~~~~~~~~v----------~~~l~~I~~n~~e~~EvRiaA~~~lm~~ 587 (618)
T PF01347_consen 532 GKEEVPHFIRVAAIQALRRLAKHCPEKV----------REILLPIFMNTTEDPEVRIAAYLILMRC 587 (618)
T ss_dssp TSS-S-HHHHHHHHHTTTTGGGT-HHHH----------HHHHHHHHH-TTS-HHHHHHHHHHHHHT
T ss_pred hccccchHHHHHHHHHHHHHhhcCcHHH----------HHHHHHHhcCCCCChhHHHHHHHHHHhc
Confidence 77 56899999999998875443332 3455566655544678999998877765
No 324
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=56.70 E-value=8.4 Score=41.77 Aligned_cols=48 Identities=25% Similarity=0.306 Sum_probs=33.5
Q ss_pred cccccCcccCC--Cceec--CCCccccHHHHHHHHhhhccCCCCCCCCCCCCCCCC
Q 001733 234 FYCPLTKEIMD--DPVTI--ESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSR 285 (1019)
Q Consensus 234 ~~Cpi~~~~m~--dPv~~--~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~~~ 285 (1019)
=.||+|.|-|. |--.. +||...||-|....-+. -+..||-|+......
T Consensus 15 d~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~----lngrcpacrr~y~de 66 (480)
T COG5175 15 DYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQN----LNGRCPACRRKYDDE 66 (480)
T ss_pred ccCcccccccccccCCcccCCcccHHHHHHHHHHHhh----ccCCChHhhhhcccc
Confidence 34999999885 33333 68998899886554433 456799999876553
No 325
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.23 E-value=1.7e+02 Score=36.63 Aligned_cols=186 Identities=10% Similarity=0.111 Sum_probs=114.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhhcCCcchHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCccc
Q 001733 520 STLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHS 599 (1019)
Q Consensus 520 ~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~ 599 (1019)
..-+..+.++-+.+|-.++.-|.++.........+...+++...++.|.+.+ +-+--+|...+..||.-
T Consensus 730 qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkded-----syvyLnaI~gv~~Lcev------ 798 (982)
T KOG4653|consen 730 QEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDED-----SYVYLNAIRGVVSLCEV------ 798 (982)
T ss_pred HHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccC-----ceeeHHHHHHHHHHHHh------
Confidence 3334455566677999999999999987766778888999999999888653 24445666655566553
Q ss_pred ccccccCcccchhhhHHHHHH-HHcCC--CCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCCCHHHH
Q 001733 600 LQVNSHGHTMVSDYVVYNIIY-MLKNS--TPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELA 676 (1019)
Q Consensus 600 ~~v~~~g~~l~~~~~i~~Ll~-LL~~~--~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~~vr 676 (1019)
..+.+++.|.. ..+.. ..++.+...-.++..+..-... ++..-.+ -.+.....-.++++...|
T Consensus 799 ----------y~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Ge---l~~~y~~-~Li~tfl~gvrepd~~~R 864 (982)
T KOG4653|consen 799 ----------YPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGE---LVFKYKA-VLINTFLSGVREPDHEFR 864 (982)
T ss_pred ----------cchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhcc---HHHHHHH-HHHHHHHHhcCCchHHHH
Confidence 12456677666 33331 1134444444555555432211 1111111 222334445566777889
Q ss_pred HHHHHHHHHhCcCCChhHHHHhhhcCCChhHhhcccCCCCcChHHHHHHHHHHhccCC
Q 001733 677 VAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCPTETIHITEKQAVSAKFLAKLPH 734 (1019)
Q Consensus 677 ~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~LV~lL~~~~~~~~~~~~A~~~L~nL~~ 734 (1019)
..++..|++|+.-..-...+.+. .....++.+...++ ..-+|.+|+.++..+-.
T Consensus 865 aSS~a~lg~Lcq~~a~~vsd~~~---ev~~~Il~l~~~d~-s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 865 ASSLANLGQLCQLLAFQVSDFFH---EVLQLILSLETTDG-SVLVRRAAVHLLAELLN 918 (982)
T ss_pred HhHHHHHHHHHHHHhhhhhHHHH---HHHHHHHHHHccCC-chhhHHHHHHHHHHHHh
Confidence 99999999998432222222333 24556666666666 56889999999988765
No 326
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=55.77 E-value=40 Score=32.51 Aligned_cols=71 Identities=24% Similarity=0.275 Sum_probs=57.2
Q ss_pred ChHHHHHHhhcCCHHHHHHHHHHHHhhccCChh-HHHHHHhcCCHHHHHHHhcC---CChhHHHHHHHHHHHhcc
Q 001733 351 VLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDE-GKEMIAETMDISILIKLLSS---SHRPVRHESLLLLLELSS 421 (1019)
Q Consensus 351 ~i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~-~k~~I~~~g~i~~Lv~lL~~---~~~~~r~~Aa~~L~~Ls~ 421 (1019)
++..|.+.|+++++.++..|+..|-.+.+.... ....+.....+..+++++.. .+..++..+..+|...+.
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 466777888999999999999999999866544 56777777788889999975 356899999988887754
No 327
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=55.38 E-value=23 Score=41.61 Aligned_cols=66 Identities=15% Similarity=0.077 Sum_probs=47.8
Q ss_pred ccchHHHHhh-hccCchhhHHHHHHHHHhhhccCcchhhHHHHHHhccchHHHHHHHhhcChhhHHHHHHHHHHHHHhh
Q 001733 888 AKAVDRLLAC-LYHENVEVVEAALSALCTLLDEKVDVDKSVSMLSEVNAIQHVLNVVKEHRQEVLQQKSFWMIERFLVK 965 (1019)
Q Consensus 888 ~gai~~Lv~l-L~~~d~~v~~~Al~AL~~L~~d~~~~~~~~~~i~~~~~i~~l~~lL~~~~~~~~~~~A~~aL~~i~~~ 965 (1019)
.|+|..|+.+ ..+.|++|+.+|.-||.-+..++. +.+...+++|.++-|.-++--.+-+|.-.+.-
T Consensus 550 ~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~------------~~lv~tvelLs~shN~hVR~g~AvaLGiacag 616 (926)
T COG5116 550 LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR------------DLLVGTVELLSESHNFHVRAGVAVALGIACAG 616 (926)
T ss_pred chhHhhhheeecccCchHHHHHHHHheeeeEecCc------------chhhHHHHHhhhccchhhhhhhHHHhhhhhcC
Confidence 4678888877 678899999999999988776653 44566667777666777777666666655544
No 328
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=55.05 E-value=3.7e+02 Score=34.24 Aligned_cols=190 Identities=13% Similarity=0.096 Sum_probs=115.6
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhccCccccccccc---chHHHHHHHH-hcCChHHHHHHHHHHHHhhcCCcchHHHHHc
Q 001733 482 LMHHLNEGSEEIQMEMASYLGEIVLGHDSKINVPG---RAASTLIRMV-HSGNSLTRRIAFKALMQISSHHPSCKILVEA 557 (1019)
Q Consensus 482 Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~i~~---~~i~~Lv~lL-~~~~~~~~~~A~~aL~~Ls~~~~~~~~l~~~ 557 (1019)
+-.-+.+.+-.-+.+++..+......+. ..+.. +-+-.+++.. .+.+..+...|+..|..|+..-..-..=...
T Consensus 258 l~t~~~s~~WK~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~ 335 (815)
T KOG1820|consen 258 LETEMLSKKWKDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAK 335 (815)
T ss_pred HHHhhhccchHHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHH
Confidence 3333445556667778877777666554 22222 2244445443 3456778888999998888654332111224
Q ss_pred CcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCcccccccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHHH
Q 001733 558 GIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRI 637 (1019)
Q Consensus 558 G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~a 637 (1019)
++.+.+++-+.... ..+++.+..++-.++... ....+.+.++..+++ .+|.++..+...
T Consensus 336 ~v~p~lld~lkekk-----~~l~d~l~~~~d~~~ns~---------------~l~~~~~~I~e~lk~-knp~~k~~~~~~ 394 (815)
T KOG1820|consen 336 NVFPSLLDRLKEKK-----SELRDALLKALDAILNST---------------PLSKMSEAILEALKG-KNPQIKGECLLL 394 (815)
T ss_pred hhcchHHHHhhhcc-----HHHHHHHHHHHHHHHhcc---------------cHHHHHHHHHHHhcC-CChhhHHHHHHH
Confidence 56666766555432 356666666665555421 124577888889999 999999987777
Q ss_pred HHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHhCcCCChhHHH
Q 001733 638 LQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTLSPYLGHTLVE 696 (1019)
Q Consensus 638 L~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~~vr~~A~~~L~~Ls~~~~~~~~~ 696 (1019)
|............-...+ .+.++.++....+.+.+||.+|..++..+-...++....
T Consensus 395 l~r~~~~~~~~~~~~~t~--~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~ 451 (815)
T KOG1820|consen 395 LDRKLRKLGPKTVEKETV--KTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFK 451 (815)
T ss_pred HHHHHhhcCCcCcchhhH--HHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 766554333100001111 245677777778888999999999988777555554433
No 329
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=54.64 E-value=8.3 Score=42.74 Aligned_cols=46 Identities=11% Similarity=0.108 Sum_probs=34.3
Q ss_pred ccccccCcccCCCceecCCCccc-cHHHHHHHHhhhccCCCCCCCCCCCCCC
Q 001733 233 TFYCPLTKEIMDDPVTIESGVTY-ERNAITAWFEKFETSGDIFCPTTGKKLM 283 (1019)
Q Consensus 233 ~~~Cpi~~~~m~dPv~~~~g~t~-~r~~I~~~~~~~~~~~~~~cP~~~~~l~ 283 (1019)
---|=||+.=-+|-+++||.|.. |..|-+. +.- .+..||+||+++.
T Consensus 290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~-Lr~----q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 290 GKECVICLSESRDTVVLPCRHLCLCSGCAKS-LRY----QTNNCPICRQPIE 336 (349)
T ss_pred CCeeEEEecCCcceEEecchhhehhHhHHHH-HHH----hhcCCCccccchH
Confidence 35699999999999999999975 5555433 332 2346999999764
No 330
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=53.66 E-value=3.7e+02 Score=30.34 Aligned_cols=219 Identities=15% Similarity=0.133 Sum_probs=110.0
Q ss_pred HHHHHHHHhcCCCCchHHHHhcCChHHHHHHhc-cCCHHHHHHHHHHHHHhccCcccccccccchHHHHHHHHhcCChHH
Q 001733 455 IADQILRNLERNPDNIKCMAENGLLEPLMHHLN-EGSEEIQMEMASYLGEIVLGHDSKINVPGRAASTLIRMVHSGNSLT 533 (1019)
Q Consensus 455 ~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~lL~-~~~~~~~~~aa~~L~~La~~~~~~~~i~~~~i~~Lv~lL~~~~~~~ 533 (1019)
..+.+|..+.. .. +...++..|+.++. ++++.....++.+|..-...- ...+.+..+..+.+=+.+..+.+
T Consensus 6 ~~~~~L~~l~~-~~-----~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~--~~~~~~~~~~~~~kGl~~kk~~v 77 (339)
T PF12074_consen 6 LHASMLSSLPS-SS-----LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL--SSELPKKVVDAFKKGLKDKKPPV 77 (339)
T ss_pred HHHHHHHhCCC-cc-----hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh--CcCCCHHHHHHHHHHhcCCCCcH
Confidence 33455555554 22 22234455666664 567777777777776543311 22233345667777777766668
Q ss_pred HHHHHHHHHHhhcCCcchHHH-HHcCcHHHHHHHHhhhccCCCCh---hHHHHHHHHHHHHHhcCC--------Cccccc
Q 001733 534 RRIAFKALMQISSHHPSCKIL-VEAGIVQVMAEEMFIRIIHNEPM---NSKEEAAAILANILESGL--------EHHSLQ 601 (1019)
Q Consensus 534 ~~~A~~aL~~Ls~~~~~~~~l-~~~G~v~~Lv~lL~~~~~~~~~~---~~~~~A~~~L~~L~~~~~--------~~~~~~ 601 (1019)
|+.-+..++.+.....+.... .-...++.|++.+.....+..+. ..-..|..++. +..... ......
T Consensus 78 R~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~-~~~~~~~~~~~~~~~~~~l~ 156 (339)
T PF12074_consen 78 RRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA-LSSWKLDKIDSKNISFWSLA 156 (339)
T ss_pred HHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH-hccccchhhhhhhhhhhhhc
Confidence 887777777766522222222 22457888888886543221111 01122222222 111000 000111
Q ss_pred ccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCC--CHHHHHHH
Q 001733 602 VNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNP--HDELAVAA 679 (1019)
Q Consensus 602 v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~--~~~vr~~A 679 (1019)
.+++...+..+.+..++ .+++-..-.+++|..+...... ...... .....+.++.++-++ ...+|+.|
T Consensus 157 ~~~kps~ll~~kvyskl-------~~~~d~~w~~~al~~~~~~~~~--~~~~~~-~~~~~~a~i~ll~s~~~~~~vR~~A 226 (339)
T PF12074_consen 157 LDPKPSFLLSEKVYSKL-------ASEEDLCWLLRALEALLSDHPS--ELSSDK-SSAWAQAFIYLLCSSNVSWKVRRAA 226 (339)
T ss_pred cCCCcchhcCHHHHhcc-------CCHhHHHHHHHHHHHHHhcchh--hhhhhH-HHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 12222333333333321 3445555566677666554322 000000 123345778888888 78999999
Q ss_pred HHHHHHhCcCCCh
Q 001733 680 IKLLTTLSPYLGH 692 (1019)
Q Consensus 680 ~~~L~~Ls~~~~~ 692 (1019)
..++..+....+.
T Consensus 227 ~~~l~~l~~~~~~ 239 (339)
T PF12074_consen 227 LSALKKLYASNPE 239 (339)
T ss_pred HHHHHHHHHhChH
Confidence 9999988754443
No 331
>PF04641 Rtf2: Rtf2 RING-finger
Probab=53.52 E-value=15 Score=39.95 Aligned_cols=35 Identities=23% Similarity=0.494 Sum_probs=31.7
Q ss_pred CccccccCcccCCCceec-CCCccccHHHHHHHHhh
Q 001733 232 ETFYCPLTKEIMDDPVTI-ESGVTYERNAITAWFEK 266 (1019)
Q Consensus 232 ~~~~Cpi~~~~m~dPv~~-~~g~t~~r~~I~~~~~~ 266 (1019)
.-++|+||++-+++||+. .-|+-|.+.+|-+|+-.
T Consensus 33 ~w~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~ 68 (260)
T PF04641_consen 33 RWTHCALSQQPLEDPIVSDRLGRLYNKEAILEFLLD 68 (260)
T ss_pred CcCcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHh
Confidence 458999999999999976 56999999999999987
No 332
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=53.25 E-value=51 Score=39.07 Aligned_cols=106 Identities=18% Similarity=0.146 Sum_probs=69.4
Q ss_pred CChHHHHHHhhcCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHhcCCChhHHHHHHHHHHHhcc---Chhhh
Q 001733 350 GVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSSHRPVRHESLLLLLELSS---TRSLC 426 (1019)
Q Consensus 350 g~i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~---~~~~~ 426 (1019)
|.+..+++-+.+++..+|...+..|..++ +.-.--....-.|.+..|.+-+-...+.+|..|+.+|..+-. ++++.
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~-d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~ 169 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLS-DVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENR 169 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHH
Confidence 55667777788899999999999999887 221111133346777777777777778899999999887743 33333
Q ss_pred hhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCC
Q 001733 427 EKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPD 468 (1019)
Q Consensus 427 ~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~ 468 (1019)
. ...|+.++++ ..+.++++. +|.|+..++.
T Consensus 170 ~--------~n~l~~~vqn-DPS~EVRr~---allni~vdns 199 (885)
T COG5218 170 I--------VNLLKDIVQN-DPSDEVRRL---ALLNISVDNS 199 (885)
T ss_pred H--------HHHHHHHHhc-CcHHHHHHH---HHHHeeeCCC
Confidence 2 2356666653 334455553 5667765443
No 333
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=52.81 E-value=42 Score=32.81 Aligned_cols=71 Identities=24% Similarity=0.212 Sum_probs=57.4
Q ss_pred ChHHHHHHhhcCCHHHHHHHHHHHHhhccCC-hhHHHHHHhcCCHHHHHHHhcC-CChhHHHHHHHHHHHhcc
Q 001733 351 VLPLLTKLLEYKDRNVRCAAMELLRQLVVED-DEGKEMIAETMDISILIKLLSS-SHRPVRHESLLLLLELSS 421 (1019)
Q Consensus 351 ~i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~-~~~k~~I~~~g~i~~Lv~lL~~-~~~~~r~~Aa~~L~~Ls~ 421 (1019)
++..|.+.|.++++.++..|+..|-.+.+.. ......|...+.+..|++++.. .++.++..++.++..-+.
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 4667778888999999999999999988653 4456778888999999999974 556888888888877754
No 334
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=52.19 E-value=4.3e+02 Score=30.53 Aligned_cols=81 Identities=19% Similarity=0.315 Sum_probs=65.3
Q ss_pred ChHHHHHHHHHHHHhcCCCC-chHHHHhcCChHHHHHHhc-cC---CHHHHHHHHHHHHHhccCccccccccc-chHHHH
Q 001733 449 DVFAAEIADQILRNLERNPD-NIKCMAENGLLEPLMHHLN-EG---SEEIQMEMASYLGEIVLGHDSKINVPG-RAASTL 522 (1019)
Q Consensus 449 ~~~~~~~A~~aL~nLs~~~~-n~~~i~~~G~i~~Lv~lL~-~~---~~~~~~~aa~~L~~La~~~~~~~~i~~-~~i~~L 522 (1019)
.+.+-..|+.++...-.++. .-..+.++|.++.+++.+. .+ +.++....-.+|..||.+..+...+.+ +.++.+
T Consensus 122 G~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~ 201 (379)
T PF06025_consen 122 GPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKL 201 (379)
T ss_pred chHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHH
Confidence 35667788888888875554 5577788999999999988 53 467777777899999999999999977 589999
Q ss_pred HHHHhcC
Q 001733 523 IRMVHSG 529 (1019)
Q Consensus 523 v~lL~~~ 529 (1019)
++++.+.
T Consensus 202 f~if~s~ 208 (379)
T PF06025_consen 202 FEIFTSP 208 (379)
T ss_pred HHHhCCH
Confidence 9998763
No 335
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=51.91 E-value=82 Score=39.54 Aligned_cols=148 Identities=12% Similarity=0.094 Sum_probs=96.6
Q ss_pred cCCHHHHHHHhcCCChhHHHHHHHHHHHhccChhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCch
Q 001733 391 TMDISILIKLLSSSHRPVRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNI 470 (1019)
Q Consensus 391 ~g~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~ 470 (1019)
...+|.+++.........+.+=..+|.+.-.+-.....+-..+...|.|++-| +-.|..++-.+..++.-+......-
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~L--s~~D~~v~vstl~~i~~~l~~~~tL 943 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQAL--SMPDVIVRVSTLRTIPMLLTESETL 943 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhc--CCCccchhhhHhhhhhHHHHhcccc
Confidence 45788888888766667777777888777654333232323455677777777 4567777777777777665322221
Q ss_pred HHHHhcCChHHHHHHhccCC---HHHHHHHHHHHHHhcc-Cccccccccc-chHHHHHHHHhcCChHHHHHHHHH
Q 001733 471 KCMAENGLLEPLMHHLNEGS---EEIQMEMASYLGEIVL-GHDSKINVPG-RAASTLIRMVHSGNSLTRRIAFKA 540 (1019)
Q Consensus 471 ~~i~~~G~i~~Lv~lL~~~~---~~~~~~aa~~L~~La~-~~~~~~~i~~-~~i~~Lv~lL~~~~~~~~~~A~~a 540 (1019)
..---.-.||.++.+=.+.+ ..++..|+..|..|.. .|...-.-.+ ..+..|.+.|.++.-.+|+.|+++
T Consensus 944 ~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 944 QTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred chHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 11111235666666544433 5688889999999988 5554444444 578999999987777788888765
No 336
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=51.89 E-value=72 Score=38.96 Aligned_cols=133 Identities=13% Similarity=0.077 Sum_probs=89.6
Q ss_pred cCCHHHHHHHhcCCChhHHHHHHHHHHHhccChhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCch
Q 001733 391 TMDISILIKLLSSSHRPVRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNI 470 (1019)
Q Consensus 391 ~g~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~ 470 (1019)
...+|.|.+.++..+..+|+.++..+-..+..-+.. .+ ..-.+|.|-.+ .....+..++.+++.++..+. +..
T Consensus 388 ~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~-~v--k~~ilP~l~~l-~~~tt~~~vkvn~L~c~~~l~---q~l 460 (700)
T KOG2137|consen 388 EKILPLLYRSLEDSDVQIQELALQILPTVAESIDVP-FV--KQAILPRLKNL-AFKTTNLYVKVNVLPCLAGLI---QRL 460 (700)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHH-HH--HHHHHHHhhcc-hhcccchHHHHHHHHHHHHHH---HHH
Confidence 345778888888888999999998888877643311 11 13345666666 335677888999999998887 222
Q ss_pred HHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCccc-ccccccchHHHHHHHHhcCC
Q 001733 471 KCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDS-KINVPGRAASTLIRMVHSGN 530 (1019)
Q Consensus 471 ~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~-~~~i~~~~i~~Lv~lL~~~~ 530 (1019)
....-..-+.++.+-.+..++.+......+..++....-+ ...+.+..+|.++-+...+.
T Consensus 461 D~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 461 DKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred HHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence 2221122345555555667889999999988888875444 45556678888888776654
No 337
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=51.80 E-value=10 Score=29.96 Aligned_cols=28 Identities=25% Similarity=0.656 Sum_probs=18.7
Q ss_pred cccccCcc-----cCCCceecCCCccccHHHHHHHHhhhccCCCCCCCCCCCC
Q 001733 234 FYCPLTKE-----IMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKK 281 (1019)
Q Consensus 234 ~~Cpi~~~-----~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~ 281 (1019)
.+||+|+. +..|-++- . -.-+||.|++.
T Consensus 5 i~CP~CgnKTR~kir~DT~Lk----------------N----fPlyCpKCK~E 37 (55)
T PF14205_consen 5 ILCPICGNKTRLKIREDTVLK----------------N----FPLYCPKCKQE 37 (55)
T ss_pred EECCCCCCccceeeecCceec----------------c----ccccCCCCCce
Confidence 57999984 45555541 1 25689999874
No 338
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=51.75 E-value=44 Score=32.78 Aligned_cols=71 Identities=23% Similarity=0.196 Sum_probs=57.6
Q ss_pred ChHHHHHHhhcCCHHHHHHHHHHHHhhccCCh-hHHHHHHhcCCHHHHHHHhcC-CChhHHHHHHHHHHHhcc
Q 001733 351 VLPLLTKLLEYKDRNVRCAAMELLRQLVVEDD-EGKEMIAETMDISILIKLLSS-SHRPVRHESLLLLLELSS 421 (1019)
Q Consensus 351 ~i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~-~~k~~I~~~g~i~~Lv~lL~~-~~~~~r~~Aa~~L~~Ls~ 421 (1019)
++..|.+.|.++++.++..|+..|-.+.+... .....|.....+..|++++.. .+..++.....++...+.
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 45667777888999999999999999886443 346677888899999999987 677899888888887764
No 339
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.58 E-value=4.7e+02 Score=30.86 Aligned_cols=155 Identities=14% Similarity=0.116 Sum_probs=88.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhhcCCcchHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCcc
Q 001733 519 ASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHH 598 (1019)
Q Consensus 519 i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~ 598 (1019)
+..+..-..+++...+..|++.|.|.++..+.+..=...-.+..++.-|-... ..+++-.+..+|..+.....++.
T Consensus 260 ~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~----~~~V~leam~~Lt~v~~~~~~~~ 335 (533)
T KOG2032|consen 260 LLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDL----NEEVQLEAMKCLTMVLEKASNDD 335 (533)
T ss_pred HHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCC----ccHHHHHHHHHHHHHHHhhhhcc
Confidence 33344444556778999999999999988544222122223444444444322 14666677777776665544332
Q ss_pred cccccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCchHHH--HHHHHHcCChHHHHHhhcCCCHHHH
Q 001733 599 SLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPMATI--VSVIKETEASYSLLEVINNPHDELA 676 (1019)
Q Consensus 599 ~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~La~~~~~~~~i--~~~i~~~g~i~~Lv~LL~~~~~~vr 676 (1019)
-. -.--++.-.+..+... .+++++..+...+..|+......-+. .+.+ .+...+|+-.++++++.+-
T Consensus 336 l~--------~~~l~ialrlR~l~~s-e~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v--~k~~~~lllhl~d~~p~va 404 (533)
T KOG2032|consen 336 LE--------SYLLNIALRLRTLFDS-EDDKMRAAAFVLFGALAKLAGGGWEEFFTEQV--KKRLAPLLLHLQDPNPYVA 404 (533)
T ss_pred hh--------hhchhHHHHHHHHHHh-cChhhhhhHHHHHHHHHHHcCCCchhhhHHHH--HhccccceeeeCCCChHHH
Confidence 00 0012344456666777 89999999888887776543321111 1112 2345566667788888887
Q ss_pred HHHHHHHHHhCc
Q 001733 677 VAAIKLLTTLSP 688 (1019)
Q Consensus 677 ~~A~~~L~~Ls~ 688 (1019)
.++-..+.....
T Consensus 405 ~ACr~~~~~c~p 416 (533)
T KOG2032|consen 405 RACRSELRTCYP 416 (533)
T ss_pred HHHHHHHHhcCc
Confidence 766555554444
No 340
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=51.13 E-value=11 Score=25.33 Aligned_cols=13 Identities=31% Similarity=0.422 Sum_probs=10.1
Q ss_pred HHHHHHHHHhhhc
Q 001733 818 VQKLAAIGLENLS 830 (1019)
Q Consensus 818 vk~~AA~aL~nLs 830 (1019)
||..|+++|+++.
T Consensus 1 VR~~Aa~aLg~ig 13 (27)
T PF03130_consen 1 VRRAAARALGQIG 13 (27)
T ss_dssp HHHHHHHHHGGG-
T ss_pred CHHHHHHHHHHcC
Confidence 6788999998774
No 341
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=49.77 E-value=77 Score=38.39 Aligned_cols=138 Identities=14% Similarity=0.069 Sum_probs=88.0
Q ss_pred hHHHHHHhhc----CCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHhc-CCChhHHHHHHHHHHHhccCh-hh
Q 001733 352 LPLLTKLLEY----KDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLS-SSHRPVRHESLLLLLELSSTR-SL 425 (1019)
Q Consensus 352 i~~Lv~lL~s----~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL~-~~~~~~r~~Aa~~L~~Ls~~~-~~ 425 (1019)
-|......++ +|+..|..|--.|..+-..+-+. -..-+|.++..+. +++|.+|.+|+-.|..+...- ..
T Consensus 894 ~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~f-----c~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~ 968 (1128)
T COG5098 894 KPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEF-----CSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTT 968 (1128)
T ss_pred hHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHhhCCCcceeccceeeccccceehhhh
Confidence 3444455554 57888888887777653222221 1245788888886 788899999998888776531 11
Q ss_pred hhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhc
Q 001733 426 CEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIV 505 (1019)
Q Consensus 426 ~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La 505 (1019)
.+.+ -.-|.+-| +.++..+++.+..++.+|-....-+ -.|..+.+..+|.+.+.+..+.|-..+..++
T Consensus 969 ~de~------t~yLyrrL--~De~~~V~rtclmti~fLilagq~K----VKGqlg~ma~~L~deda~Isdmar~fft~~a 1036 (1128)
T COG5098 969 ADEH------THYLYRRL--GDEDADVRRTCLMTIHFLILAGQLK----VKGQLGKMALLLTDEDAEISDMARHFFTQIA 1036 (1128)
T ss_pred hHHH------HHHHHHHh--cchhhHHHHHHHHHHHHHHHcccee----eccchhhhHhhccCCcchHHHHHHHHHHHHH
Confidence 1111 12334444 4667888999999998886543322 2377778888888877777666655666665
Q ss_pred c
Q 001733 506 L 506 (1019)
Q Consensus 506 ~ 506 (1019)
.
T Consensus 1037 ~ 1037 (1128)
T COG5098 1037 K 1037 (1128)
T ss_pred h
Confidence 4
No 342
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=48.50 E-value=85 Score=38.04 Aligned_cols=116 Identities=10% Similarity=0.101 Sum_probs=80.1
Q ss_pred hHHHHhhhccCchhhHHHHHHHHHhhhccCcchhhHHHHHH----h-ccchHHHHHHHhhcChhhHHHHHHHHHHHHHhh
Q 001733 891 VDRLLACLYHENVEVVEAALSALCTLLDEKVDVDKSVSMLS----E-VNAIQHVLNVVKEHRQEVLQQKSFWMIERFLVK 965 (1019)
Q Consensus 891 i~~Lv~lL~~~d~~v~~~Al~AL~~L~~d~~~~~~~~~~i~----~-~~~i~~l~~lL~~~~~~~~~~~A~~aL~~i~~~ 965 (1019)
...++.+|+++.--.+...+.+++|++.+-. ..+ ++.. + +.-+..+.+-|. ..++-.+.+|+..+++||..
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~--~d~-qm~e~~~~~~~~Lv~ll~ERl~-D~~py~RtKalqv~~kifdl 376 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFK--KDG-QMVEHYKQKLNDLVGLLVERLS-DTYPYTRTKALQVLEKIFDL 376 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHh--cch-hhHhhHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHHHHhC
Confidence 7789999999999999999999999985421 011 1111 0 122344555565 56788999999999999976
Q ss_pred CCccccccccccccchHHHHHHhhcCCchhhHHHHHHHHHhccCCCCCC
Q 001733 966 GGNKQASDISQDRLLPATLVSAFHHGDVNTRQMAEKILRHLNKMPNFSA 1014 (1019)
Q Consensus 966 ~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~~L~~L~~~~~~s~ 1014 (1019)
...-... -+......+.-+++.++.+|+.|-+.+..|-.-|-|++
T Consensus 377 ~sk~~~~----r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HPF~~ 421 (1128)
T COG5098 377 NSKTVGR----RHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHPFAS 421 (1128)
T ss_pred cccccch----HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCChhh
Confidence 2211111 11222334566999999999999999998877777765
No 343
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=48.40 E-value=19 Score=41.23 Aligned_cols=150 Identities=14% Similarity=0.115 Sum_probs=75.7
Q ss_pred hhcCCC-HHHHHHHHHHHHHhCcCCChhHHHHhhhcCCChhHhhccc-CCCCcChHHHHHHHHHHhccCCCChhhHHHHH
Q 001733 667 VINNPH-DELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCP-TETIHITEKQAVSAKFLAKLPHQNLTLNLALS 744 (1019)
Q Consensus 667 LL~~~~-~~vr~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~LV~lL-~~~~~~~~~~~~A~~~L~nL~~~~~~~~~~l~ 744 (1019)
-++.++ ..-|.+|+.+|+.|+...+......+. +.+..++.-. .++..+...+..|+.+++.|.........-+.
T Consensus 218 d~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~---~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt 294 (370)
T PF08506_consen 218 DLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILM---QYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVT 294 (370)
T ss_dssp HSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S
T ss_pred hccccccCCcHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcc
Confidence 344433 457888999999999644443333332 1222222211 12222567788888888887653211100000
Q ss_pred hCCChHHHHHHHHhhhccCCC-ccchhhhHHHHHHHHHHHHhcCCCchhHHHHHHhCCchHHHHHHHhcCCcHHHHHHHH
Q 001733 745 ARNVVPTILQTINLIQRSGTR-TSRYASAYLEGLIGILVRFTTTLYEPQILFLARTHNFTSVFTELLMKTSCDEVQKLAA 823 (1019)
Q Consensus 745 ~~g~l~~Lv~lL~~~~~~~~~-~~~~~~~~~e~a~~aL~~lt~~~~~~~~~~~~~~~g~i~~Lv~LL~~~~~~~vk~~AA 823 (1019)
+.+.+-.+..++...--+... .......++..++..+..|.... .++ .+ .+++|.++..|.+ ++..|...||
T Consensus 295 ~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l-~~~---~l--~~~~~~l~~~L~~-~~~vv~tyAA 367 (370)
T PF08506_consen 295 QTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQL-PKE---QL--LQIFPLLVNHLQS-SSYVVHTYAA 367 (370)
T ss_dssp -B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS--HH---HH--HHHHHHHHHHTTS-S-HHHHHHHH
T ss_pred cccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhC-CHH---HH--HHHHHHHHHHhCC-CCcchhhhhh
Confidence 111111223333211000000 11234567777888888887532 222 22 2578999999999 8999999999
Q ss_pred HHH
Q 001733 824 IGL 826 (1019)
Q Consensus 824 ~aL 826 (1019)
.++
T Consensus 368 ~~i 370 (370)
T PF08506_consen 368 IAI 370 (370)
T ss_dssp HHH
T ss_pred hhC
Confidence 986
No 344
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=48.25 E-value=1.8e+02 Score=29.03 Aligned_cols=143 Identities=15% Similarity=0.122 Sum_probs=73.5
Q ss_pred hHHHHHHhccC-CHHHHHHHHHHHHHhccCcccccccccchHHHHHHHHhcCChHHHHHHHHHHHHhhcCCcchHHHHHc
Q 001733 479 LEPLMHHLNEG-SEEIQMEMASYLGEIVLGHDSKINVPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEA 557 (1019)
Q Consensus 479 i~~Lv~lL~~~-~~~~~~~aa~~L~~La~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~~~~l~~~ 557 (1019)
++.|+++|+.+ +..++.+++++|+.|..-+..+-....+..+.-. -...+..... ..+.+.. .....+...-.
T Consensus 12 L~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~--~~~~~~~~~~---~~l~~~~-~~~~~ee~y~~ 85 (160)
T PF11865_consen 12 LDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKS--SENSNDESTD---ISLPMMG-ISPSSEEYYPT 85 (160)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccc--cccccccchh---hHHhhcc-CCCchHHHHHH
Confidence 45677777644 6899999999999986533222221111101000 0000111111 0111111 11123344445
Q ss_pred CcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCcccccccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHHH
Q 001733 558 GIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRI 637 (1019)
Q Consensus 558 G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~a 637 (1019)
.++..|+..|....- ......+..++.++.+....+ .. ---..+++.++..++. .++..++....-
T Consensus 86 vvi~~L~~iL~D~sL----s~~h~~vv~ai~~If~~l~~~-cv--------~~L~~viP~~l~~i~~-~~~~~~e~~~~q 151 (160)
T PF11865_consen 86 VVINALMRILRDPSL----SSHHTAVVQAIMYIFKSLGLK-CV--------PYLPQVIPIFLRVIRT-CPDSLREFYFQQ 151 (160)
T ss_pred HHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHHhcCcC-ch--------hHHHHHhHHHHHHHHh-CCHHHHHHHHHH
Confidence 567778887776531 244456677777776542211 11 1235688999999987 566777765555
Q ss_pred HHHH
Q 001733 638 LQCL 641 (1019)
Q Consensus 638 L~~L 641 (1019)
|..|
T Consensus 152 L~~l 155 (160)
T PF11865_consen 152 LADL 155 (160)
T ss_pred HHHH
Confidence 5444
No 345
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=48.11 E-value=11 Score=40.75 Aligned_cols=43 Identities=23% Similarity=0.437 Sum_probs=32.8
Q ss_pred ccccccCcccCCC----ceecCCCccccHHHHHHHHhhhccCCCCCCCCCCC
Q 001733 233 TFYCPLTKEIMDD----PVTIESGVTYERNAITAWFEKFETSGDIFCPTTGK 280 (1019)
Q Consensus 233 ~~~Cpi~~~~m~d----Pv~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~ 280 (1019)
++-||||.+.+-+ |...+|||+.=..|.++.... + .+||.|..
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~----~-y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICE----G-YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhcc----C-CCCCcccc
Confidence 3559999987655 778899999876666665555 5 89999966
No 346
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=48.08 E-value=15 Score=29.21 Aligned_cols=28 Identities=25% Similarity=0.603 Sum_probs=24.2
Q ss_pred ccccccCcccC--CCceec--CCCccccHHHH
Q 001733 233 TFYCPLTKEIM--DDPVTI--ESGVTYERNAI 260 (1019)
Q Consensus 233 ~~~Cpi~~~~m--~dPv~~--~~g~t~~r~~I 260 (1019)
.-.||+|++.| .|.+++ .||-.|=|.|-
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~ 36 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCW 36 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHH
Confidence 35799999999 788888 88999999994
No 347
>KOG4713 consensus Cyclin-dependent kinase 2-associated protein [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]
Probab=47.72 E-value=21 Score=35.15 Aligned_cols=41 Identities=24% Similarity=0.298 Sum_probs=32.6
Q ss_pred HhhhhHHHHhhh-CCCCChhHHHHHHHHHHHHHHHHHHHHhc
Q 001733 44 YRATPVIMELQT-TKYTPANALEILQSLSKSISLGKDLVAKC 84 (1019)
Q Consensus 44 ~~l~~lleel~~-~~~~~~~~~~~l~~L~~~l~~ak~L~~~c 84 (1019)
.-|+.++||++. -++.=...+...|.|++.+..||.||+.|
T Consensus 138 ~~LL~vieEmgkeirpTyagsks~~ERLKr~I~hAR~lVRec 179 (189)
T KOG4713|consen 138 ADLLSVIEEMGKEIRPTYAGSKSAMERLKRDIIHARLLVREC 179 (189)
T ss_pred HHHHHHHHHHhcccCccccccccHHHHHHhhHHHHHHHHHHH
Confidence 345567799994 44444467778999999999999999999
No 348
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.49 E-value=8.9e+02 Score=32.87 Aligned_cols=175 Identities=18% Similarity=0.137 Sum_probs=90.1
Q ss_pred hHHHHHHhhcCCHHHHHHHHHHHHhhccCChhHHHHHHh--cCCHHHHHHHhcCCChhHHHHHHHHHHHhccChhhhhhh
Q 001733 352 LPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAE--TMDISILIKLLSSSHRPVRHESLLLLLELSSTRSLCEKI 429 (1019)
Q Consensus 352 i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~--~g~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~~~~~~~i 429 (1019)
||.|.+.=-+++..+| .|..-+.+.-..+ .|..+-+ ...+.-|+.-|.+..-.+|+.++.+|..|-...+.-+..
T Consensus 1000 IPrLyRY~yDP~~~Vq-~aM~sIW~~Li~D--~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~ 1076 (1702)
T KOG0915|consen 1000 IPRLYRYQYDPDKKVQ-DAMTSIWNALITD--SKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVK 1076 (1702)
T ss_pred hHHHhhhccCCcHHHH-HHHHHHHHHhccC--hHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHH
Confidence 3333333234566555 4666666543222 2222211 334556666666666689999999999998865443322
Q ss_pred hcccchHHHHHHhhhcCCC-ChHHHHHHHHHHHHhcC---CCCc--hHHHHhcCChHHHHH--HhccCCHHHHHHHHHHH
Q 001733 430 GSIPGGILVLITFKFNWSI-DVFAAEIADQILRNLER---NPDN--IKCMAENGLLEPLMH--HLNEGSEEIQMEMASYL 501 (1019)
Q Consensus 430 ~~~~g~I~~LV~lL~~~~~-~~~~~~~A~~aL~nLs~---~~~n--~~~i~~~G~i~~Lv~--lL~~~~~~~~~~aa~~L 501 (1019)
-..+.....+.+.+.+-.+ -.++...++.+|..|+. +..| +..-+-..++|.|++ .+ +.-++++.-+..++
T Consensus 1077 e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gim-s~v~evr~~si~tl 1155 (1702)
T KOG0915|consen 1077 EKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIM-SKVNEVRRFSIGTL 1155 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcc-cchHHHHHHHHHHH
Confidence 2213333333444321000 11333445566666652 1122 222222235555554 22 44578999999999
Q ss_pred HHhccCccccccccc---chHHHHHHHHhcCChH
Q 001733 502 GEIVLGHDSKINVPG---RAASTLIRMVHSGNSL 532 (1019)
Q Consensus 502 ~~La~~~~~~~~i~~---~~i~~Lv~lL~~~~~~ 532 (1019)
..|+.+... .+.- .-+|.|+.....-.+.
T Consensus 1156 ~dl~Kssg~--~lkP~~~~LIp~ll~~~s~lE~~ 1187 (1702)
T KOG0915|consen 1156 MDLAKSSGK--ELKPHFPKLIPLLLNAYSELEPQ 1187 (1702)
T ss_pred HHHHHhchh--hhcchhhHHHHHHHHHccccchH
Confidence 999875433 2211 2466666666554443
No 349
>PF13811 DUF4186: Domain of unknown function (DUF4186)
Probab=47.44 E-value=12 Score=34.10 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=16.7
Q ss_pred Cceec---CCCccccHHHHHHHHhh
Q 001733 245 DPVTI---ESGVTYERNAITAWFEK 266 (1019)
Q Consensus 245 dPv~~---~~g~t~~r~~I~~~~~~ 266 (1019)
.||.+ .|| |.||.||++|=.=
T Consensus 64 HPVFiAQHATa-tCCRgCL~KWH~I 87 (111)
T PF13811_consen 64 HPVFIAQHATA-TCCRGCLEKWHGI 87 (111)
T ss_pred CCeeeecCCCc-cchHHHHHHHhCC
Confidence 58877 455 8999999999764
No 350
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=46.11 E-value=4e+02 Score=28.40 Aligned_cols=131 Identities=14% Similarity=0.058 Sum_probs=76.3
Q ss_pred CCCChHHHHHHHHHHHHhcCCC-CchHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCcccccccccchHHHHHH
Q 001733 446 WSIDVFAAEIADQILRNLERNP-DNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDSKINVPGRAASTLIR 524 (1019)
Q Consensus 446 ~~~~~~~~~~A~~aL~nLs~~~-~n~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~i~~~~i~~Lv~ 524 (1019)
+..++..+.....+|..++.++ .+...+ +..|..+...+..+...-+.+.+..+-.... +. . +.+..++.
T Consensus 11 ~~~~~~~~~~~L~~L~~l~~~~~~~~~~v-----~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~-r~--f-~~L~~~L~ 81 (234)
T PF12530_consen 11 KISDPELQLPLLEALPSLACHKNVCVPPV-----LQTLVSLVEQGSLELRYVALRLLTLLWKAND-RH--F-PFLQPLLL 81 (234)
T ss_pred CCCChHHHHHHHHHHHHHhccCccchhHH-----HHHHHHHHcCCchhHHHHHHHHHHHHHHhCc-hH--H-HHHHHHHH
Confidence 4568889999999999999877 554443 3456666666666665555566665544221 11 0 22333333
Q ss_pred H--Hh---c--CC---hHHHHHHHHHHHHhhcCCcchHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhc
Q 001733 525 M--VH---S--GN---SLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILES 593 (1019)
Q Consensus 525 l--L~---~--~~---~~~~~~A~~aL~~Ls~~~~~~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~ 593 (1019)
. ++ . +. .+..-..+..+..+|...++ .....++.+..+|... .+...+..+...|..|+..
T Consensus 82 ~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~----~~~~~~alale~l~~Lc~~ 152 (234)
T PF12530_consen 82 LLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQS----CDEVAQALALEALAPLCEA 152 (234)
T ss_pred HHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhcc----ccHHHHHHHHHHHHHHHHH
Confidence 3 11 1 11 22333345577888877666 2223466777777311 1357888888889998854
No 351
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=45.78 E-value=6.6 Score=47.50 Aligned_cols=67 Identities=15% Similarity=0.325 Sum_probs=48.1
Q ss_pred CCCccccccCcccCCCceecCCCccccHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCccCHhHHHHHH
Q 001733 230 LYETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNTNVALKTTIE 298 (1019)
Q Consensus 230 ~~~~~~Cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~~~~l~pn~~Lr~~I~ 298 (1019)
+.....||||.+...+|+.+.|-|.||+.|+-.-|... .+...||+|+.........-...-.++++
T Consensus 18 ~~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~--~~~~~~~lc~~~~eK~s~~Es~r~sq~vq 84 (684)
T KOG4362|consen 18 MQKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESK--KGPKQCALCKSDIEKRSLRESPRFSQLSK 84 (684)
T ss_pred HhhhccCCceeEEeeccchhhhhHHHHhhhhhceeecc--CccccchhhhhhhhhhhccccchHHHHHH
Confidence 44578899999999999999999999999988865541 14567999986555444433333333444
No 352
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=44.40 E-value=69 Score=31.20 Aligned_cols=70 Identities=17% Similarity=0.212 Sum_probs=54.9
Q ss_pred ChHHHHHHhhcCCHHHHHHHHHHHHhhccCC-hhHHHHHHhcCCHHHHHHHhcC------CChhHHHHHHHHHHHhc
Q 001733 351 VLPLLTKLLEYKDRNVRCAAMELLRQLVVED-DEGKEMIAETMDISILIKLLSS------SHRPVRHESLLLLLELS 420 (1019)
Q Consensus 351 ~i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~-~~~k~~I~~~g~i~~Lv~lL~~------~~~~~r~~Aa~~L~~Ls 420 (1019)
++..|.+.|.++++.++..|+..|-.+.+.. ......|...+.+..+++++.. .+..++.....++..-+
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 4566778889999999999999999888543 4456778888999999999963 35678888877776654
No 353
>PLN02189 cellulose synthase
Probab=44.36 E-value=15 Score=46.78 Aligned_cols=46 Identities=17% Similarity=0.216 Sum_probs=35.1
Q ss_pred cccccCccc-----CCCceec--CCCccccHHHHHHHHhhhccCCCCCCCCCCCCCC
Q 001733 234 FYCPLTKEI-----MDDPVTI--ESGVTYERNAITAWFEKFETSGDIFCPTTGKKLM 283 (1019)
Q Consensus 234 ~~Cpi~~~~-----m~dPv~~--~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~ 283 (1019)
-.|+||++- +-+|.+. .||.-.||.|.|-=-++ |+..||.|+....
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~e----g~q~CpqCkt~Y~ 87 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERRE----GTQNCPQCKTRYK 87 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhc----CCccCcccCCchh
Confidence 379999985 3346655 57888999999654455 7899999998764
No 354
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=43.95 E-value=3.3e+02 Score=33.44 Aligned_cols=187 Identities=9% Similarity=0.046 Sum_probs=105.8
Q ss_pred HhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCcccccccccchHHHHHHHHhcCChHHHHHHHHHHHHhhcCCcchHH
Q 001733 474 AENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDSKINVPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCKI 553 (1019)
Q Consensus 474 ~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~~~~ 553 (1019)
.+.+.+|.|++++...+..+|...+.-+-+.... -.+..+.+...|.+..-+.+.++.+++.++.++..|+..=..+
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~-Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~-- 403 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH-LTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR-- 403 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhh-cCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh--
Confidence 5678999999999998888887776666554431 1222233357899999899999999999999998887542221
Q ss_pred HHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCcccccccccCcccchhhhHHHHHHHHcCCCCHHHHHH
Q 001733 554 LVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVH 633 (1019)
Q Consensus 554 l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~ 633 (1019)
.. =.-|++.+.....|. ...++.+-.-+|..++..... .....-.+..+.+-++. +-+.-|..
T Consensus 404 ~L----n~Ellr~~ar~q~d~-~~~irtntticlgki~~~l~~-----------~~R~~vL~~aftralkd-pf~paR~a 466 (690)
T KOG1243|consen 404 NL----NGELLRYLARLQPDE-HGGIRTNTTICLGKIAPHLAA-----------SVRKRVLASAFTRALKD-PFVPARKA 466 (690)
T ss_pred hh----cHHHHHHHHhhCccc-cCcccccceeeecccccccch-----------hhhccccchhhhhhhcC-CCCCchhh
Confidence 00 011223233222111 113333333333332221100 00111122333444444 55666777
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHh
Q 001733 634 LIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTL 686 (1019)
Q Consensus 634 a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~~vr~~A~~~L~~L 686 (1019)
++.+|+..+..... .++ ....++.++.+.-+++..+|..|-.++...
T Consensus 467 ~v~~l~at~~~~~~-~~v-----a~kIlp~l~pl~vd~e~~vr~~a~~~i~~f 513 (690)
T KOG1243|consen 467 GVLALAATQEYFDQ-SEV-----ANKILPSLVPLTVDPEKTVRDTAEKAIRQF 513 (690)
T ss_pred hhHHHhhcccccch-hhh-----hhhccccccccccCcccchhhHHHHHHHHH
Confidence 77777777664442 221 135667777777778888887777766544
No 355
>PF14353 CpXC: CpXC protein
Probab=42.76 E-value=14 Score=35.37 Aligned_cols=48 Identities=15% Similarity=0.207 Sum_probs=30.9
Q ss_pred ccccccCcccCCCceecCCCccccHHHHHHHHhhhccCCCCCCCCCCCCC
Q 001733 233 TFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKL 282 (1019)
Q Consensus 233 ~~~Cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l 282 (1019)
+.+||-|+..+.-.+-..=.-+.+....++-++.. =...+||.||...
T Consensus 1 ~itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~--l~~~~CP~Cg~~~ 48 (128)
T PF14353_consen 1 EITCPHCGHEFEFEVWTSINADEDPELKEKILDGS--LFSFTCPSCGHKF 48 (128)
T ss_pred CcCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCC--cCEEECCCCCCce
Confidence 36899999999876643222235666666666430 0246899999865
No 356
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=42.64 E-value=1.6e+02 Score=26.87 Aligned_cols=67 Identities=16% Similarity=0.066 Sum_probs=47.9
Q ss_pred cchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHHHhcCChHHHHHHhccCCHHHHHHHHHHH
Q 001733 433 PGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQMEMASYL 501 (1019)
Q Consensus 433 ~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L 501 (1019)
.+.+..|++..+ ..++.....+...|..|..++.....+.+-|++..|-++=..-++..+...-.++
T Consensus 29 ~~Ll~~LleWFn--f~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 29 RLLLKQLLEWFN--FPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHhC--CCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 445556666653 3444578889999999999999999999999998877765555565555554444
No 357
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=41.54 E-value=31 Score=41.94 Aligned_cols=52 Identities=10% Similarity=-0.015 Sum_probs=38.4
Q ss_pred CCCCccccccCcccCCCce----ecC---CCccccHHHHHHHHhhhc-cCCCCCCCCCCC
Q 001733 229 PLYETFYCPLTKEIMDDPV----TIE---SGVTYERNAITAWFEKFE-TSGDIFCPTTGK 280 (1019)
Q Consensus 229 ~~~~~~~Cpi~~~~m~dPv----~~~---~g~t~~r~~I~~~~~~~~-~~~~~~cP~~~~ 280 (1019)
..++.-+|++|-.-+.+|| +.+ +++.+|-.||..|.+.-. ...+..|++|..
T Consensus 92 K~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~ 151 (1134)
T KOG0825|consen 92 KTAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEE 151 (1134)
T ss_pred ccccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHH
Confidence 3567789999999999955 234 899999999999988533 223456777733
No 358
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=41.33 E-value=9e+02 Score=31.16 Aligned_cols=64 Identities=11% Similarity=0.135 Sum_probs=32.6
Q ss_pred hHHHHHHHhhcChhhHHHHHHHHHHHHHhhCCccccccccccccchHHHHHHhhcCCchhhHHHHHHHHHh
Q 001733 936 IQHVLNVVKEHRQEVLQQKSFWMIERFLVKGGNKQASDISQDRLLPATLVSAFHHGDVNTRQMAEKILRHL 1006 (1019)
Q Consensus 936 i~~l~~lL~~~~~~~~~~~A~~aL~~i~~~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~Aa~~L~~L 1006 (1019)
||.|..-|. .+++-+++.++-+|.|++.. ++.+.-|. ..-..+-.+-+.++.+|..|.-.+.++
T Consensus 1008 iP~I~~~L~-Dp~~iVRrqt~ilL~rLLq~---~~vKw~G~---Lf~Rf~l~l~D~~edIr~~a~f~~~~v 1071 (1529)
T KOG0413|consen 1008 IPMIAASLC-DPSVIVRRQTIILLARLLQF---GIVKWNGE---LFIRFMLALLDANEDIRNDAKFYISEV 1071 (1529)
T ss_pred hHHHHHHhc-CchHHHHHHHHHHHHHHHhh---hhhhcchh---hHHHHHHHHcccCHHHHHHHHHHHHHH
Confidence 455556665 56666666666666666543 23322221 111233344445556666665555554
No 359
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=40.62 E-value=1.4e+02 Score=28.71 Aligned_cols=77 Identities=13% Similarity=0.059 Sum_probs=59.0
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHHHHhhcCCcc--hHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcC
Q 001733 517 RAASTLIRMVHSGNSLTRRIAFKALMQISSHHPS--CKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESG 594 (1019)
Q Consensus 517 ~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~--~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~ 594 (1019)
.++..|-+-|.++++.++..|+.+|-.|..+.+. +..+.....+..|+.++.... ..+..++.++..++...+...
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~--~~~~~Vk~kil~ll~~W~~~f 114 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSP--KYDPKVREKALELILAWSESF 114 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHHHHHHHh
Confidence 3677888888999999999999999999988765 455555577777888887541 134689999999988877654
Q ss_pred C
Q 001733 595 L 595 (1019)
Q Consensus 595 ~ 595 (1019)
.
T Consensus 115 ~ 115 (133)
T cd03561 115 G 115 (133)
T ss_pred c
Confidence 3
No 360
>PLN02195 cellulose synthase A
Probab=40.47 E-value=20 Score=45.29 Aligned_cols=45 Identities=13% Similarity=0.206 Sum_probs=35.0
Q ss_pred ccccCcc-----cCCCceec--CCCccccHHHHHHHHhhhccCCCCCCCCCCCCCC
Q 001733 235 YCPLTKE-----IMDDPVTI--ESGVTYERNAITAWFEKFETSGDIFCPTTGKKLM 283 (1019)
Q Consensus 235 ~Cpi~~~-----~m~dPv~~--~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~ 283 (1019)
.|.||++ .+-+|.+. .||.-.||.|.|-=-++ |+..||.|+.+..
T Consensus 8 ~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~e----g~q~CpqCkt~Yk 59 (977)
T PLN02195 8 ICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKE----GRKVCLRCGGPYD 59 (977)
T ss_pred cceecccccCcCCCCCeEEEeccCCCccccchhhhhhhc----CCccCCccCCccc
Confidence 6999988 45567766 78888999999543334 7899999998876
No 361
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=40.41 E-value=23 Score=31.88 Aligned_cols=27 Identities=19% Similarity=0.534 Sum_probs=23.2
Q ss_pred CCCccccHHHHHHHHhhhccCCCCCCCCCCCC
Q 001733 250 ESGVTYERNAITAWFEKFETSGDIFCPTTGKK 281 (1019)
Q Consensus 250 ~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~ 281 (1019)
.|.|.|--.||.+|++. ...||.+.++
T Consensus 80 ~CNHaFH~hCisrWlkt-----r~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKT-----RNVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhh-----cCcCCCcCcc
Confidence 67899999999999997 4579998764
No 362
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=40.25 E-value=83 Score=30.32 Aligned_cols=71 Identities=25% Similarity=0.241 Sum_probs=55.4
Q ss_pred ChHHHHHHhhcCCHHHHHHHHHHHHhhccCC-hhHHHHHHhcCCHHHHHHHhcCCCh--hHHHHHHHHHHHhcc
Q 001733 351 VLPLLTKLLEYKDRNVRCAAMELLRQLVVED-DEGKEMIAETMDISILIKLLSSSHR--PVRHESLLLLLELSS 421 (1019)
Q Consensus 351 ~i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~-~~~k~~I~~~g~i~~Lv~lL~~~~~--~~r~~Aa~~L~~Ls~ 421 (1019)
++..|.+-|.++++.++..|+..|-.+.+.. +.....|...+.+..|+.++..... .++..+..++..-+.
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 4566778888999999999999999988653 4456777788899999999977433 378888877777654
No 363
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=39.84 E-value=7.1e+02 Score=29.56 Aligned_cols=52 Identities=21% Similarity=0.122 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCC------CHHHHHHHHHHHHHhCcC
Q 001733 628 DELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNP------HDELAVAAIKLLTTLSPY 689 (1019)
Q Consensus 628 ~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~------~~~vr~~A~~~L~~Ls~~ 689 (1019)
..+...+.+++.+|+.+..+. -.+..|..+|.++ +..+.+.|+..|..+..+
T Consensus 229 ~~l~~~~w~~m~nL~~S~~g~----------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~ 286 (464)
T PF11864_consen 229 VSLCKPSWRTMRNLLKSHLGH----------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWG 286 (464)
T ss_pred cccchhHHHHHHHHHcCccHH----------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhc
Confidence 366667777888887755431 2344566777322 245667888888777643
No 364
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=39.25 E-value=5.7 Score=42.36 Aligned_cols=40 Identities=18% Similarity=0.200 Sum_probs=29.8
Q ss_pred ccccccCcccCCCceecCCCccc-cHHHHHHHHhhhccCCCCCCCCCCCC
Q 001733 233 TFYCPLTKEIMDDPVTIESGVTY-ERNAITAWFEKFETSGDIFCPTTGKK 281 (1019)
Q Consensus 233 ~~~Cpi~~~~m~dPv~~~~g~t~-~r~~I~~~~~~~~~~~~~~cP~~~~~ 281 (1019)
+.+|-||.+.-+|=|.++|||-. |-.| . ..-..||+|++.
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~C--------G-krm~eCPICRqy 340 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKC--------G-KRMNECPICRQY 340 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhh--------c-cccccCchHHHH
Confidence 78999999999999999999865 2222 0 122369998774
No 365
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=38.84 E-value=1.2e+02 Score=29.71 Aligned_cols=74 Identities=8% Similarity=0.008 Sum_probs=59.8
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHHHHhhcCCcc--hHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcC
Q 001733 517 RAASTLIRMVHSGNSLTRRIAFKALMQISSHHPS--CKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESG 594 (1019)
Q Consensus 517 ~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~--~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~ 594 (1019)
.++..|.+-|.++++.++-.|+.+|-.+..+.+. +..+...+.+..|+.++.. . .+..+++++..++..-+...
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~-~---~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKT-T---KNEEVRQKILELIQAWALAF 116 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcc-c---CCHHHHHHHHHHHHHHHHHh
Confidence 4678888888899999999999999999887654 5677788899999998865 2 24689999999888876543
No 366
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=38.76 E-value=2.8e+02 Score=27.64 Aligned_cols=142 Identities=15% Similarity=0.144 Sum_probs=77.4
Q ss_pred CHHHHHHHhcCC-ChhHHHHHHHHHHHhccChhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchH
Q 001733 393 DISILIKLLSSS-HRPVRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIK 471 (1019)
Q Consensus 393 ~i~~Lv~lL~~~-~~~~r~~Aa~~L~~Ls~~~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~ 471 (1019)
.++.|.++|+.+ +..+|..+..+|..|-.-|..+.+... +....-.. ...+.. ..-..+.+....+ .-.
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~--~~~~~~~~----~~~~~~---~~~~~l~~~~~~~-~~e 80 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQ--KSLDSKSS----ENSNDE---STDISLPMMGISP-SSE 80 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccc--ccCCcccc----cccccc---chhhHHhhccCCC-chH
Confidence 356778888775 468999999999998776666555321 11110000 000000 0111222221111 122
Q ss_pred HHHhcCChHHHHHHhccCCHH-HHHHHHHHHHHhccCcccc-cccccchHHHHHHHHhcCChHHHHHHHHHHHHh
Q 001733 472 CMAENGLLEPLMHHLNEGSEE-IQMEMASYLGEIVLGHDSK-INVPGRAASTLIRMVHSGNSLTRRIAFKALMQI 544 (1019)
Q Consensus 472 ~i~~~G~i~~Lv~lL~~~~~~-~~~~aa~~L~~La~~~~~~-~~i~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L 544 (1019)
...-..++..|++.|++.+-. -...++.++..+-.....+ .......+|.++..+++.++..+|.-..-|..|
T Consensus 81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 333344778899999876532 2334555665555432222 222335789999999987777777766655554
No 367
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=38.66 E-value=12 Score=34.27 Aligned_cols=32 Identities=16% Similarity=0.308 Sum_probs=26.2
Q ss_pred CCCccccccCcccCCCceec--CCCccccHHHHH
Q 001733 230 LYETFYCPLTKEIMDDPVTI--ESGVTYERNAIT 261 (1019)
Q Consensus 230 ~~~~~~Cpi~~~~m~dPv~~--~~g~t~~r~~I~ 261 (1019)
+.++-.|++|++-+.+++.+ ||||.|-..|+.
T Consensus 75 i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 55667799999999987755 999999888864
No 368
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.62 E-value=33 Score=38.09 Aligned_cols=63 Identities=16% Similarity=0.203 Sum_probs=54.7
Q ss_pred HHHHHHHHHhcccccchHHHhcCChHHHHHHh--hcCCHHHHHHHHHHHHhhccCChhHHHHHHh
Q 001733 328 AIKDLQTVCQRKQYNKVQVRNVGVLPLLTKLL--EYKDRNVRCAAMELLRQLVVEDDEGKEMIAE 390 (1019)
Q Consensus 328 Al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL--~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~ 390 (1019)
-.+-|..+|...+.+...+.+-|+++.++.-. ++.||-+++..+-++++|..++.+|++.|.+
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 45568889999999999999999999887644 3568999999999999999999999999865
No 369
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=38.23 E-value=35 Score=29.16 Aligned_cols=47 Identities=13% Similarity=0.224 Sum_probs=21.2
Q ss_pred ccccccCcccCC-----Cceec--CCCccccHHHHHHHHhhhccCCCCCCCCCCCCCC
Q 001733 233 TFYCPLTKEIMD-----DPVTI--ESGVTYERNAITAWFEKFETSGDIFCPTTGKKLM 283 (1019)
Q Consensus 233 ~~~Cpi~~~~m~-----dPv~~--~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~ 283 (1019)
.-+|.||++=.- +|.+. .|+.-.||.|.+-=.++ |+..||.|+.+..
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErke----g~q~CpqCkt~yk 62 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKE----GNQVCPQCKTRYK 62 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHT----S-SB-TTT--B--
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhc----CcccccccCCCcc
Confidence 346888876332 34444 67888899999877777 7899999987653
No 370
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=38.02 E-value=21 Score=35.66 Aligned_cols=25 Identities=20% Similarity=0.538 Sum_probs=19.0
Q ss_pred ccccccCcccCCCceecCCCccccHHHHHHHHhhhccCCCCCCCCCCCC
Q 001733 233 TFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKK 281 (1019)
Q Consensus 233 ~~~Cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~ 281 (1019)
-..||+||-++.+. .+..||+|+.+
T Consensus 134 ~~vC~vCGy~~~ge------------------------~P~~CPiCga~ 158 (166)
T COG1592 134 VWVCPVCGYTHEGE------------------------APEVCPICGAP 158 (166)
T ss_pred EEEcCCCCCcccCC------------------------CCCcCCCCCCh
Confidence 47899997766662 35679999975
No 371
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.99 E-value=1.8e+02 Score=32.10 Aligned_cols=136 Identities=10% Similarity=0.112 Sum_probs=83.1
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhcc-CcccccccccchHHHHHHHHhcCChHHHHHHHHHHHHhhcCCcchHHHHHcCcH
Q 001733 482 LMHHLNEGSEEIQMEMASYLGEIVL-GHDSKINVPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIV 560 (1019)
Q Consensus 482 Lv~lL~~~~~~~~~~aa~~L~~La~-~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~~~~l~~~G~v 560 (1019)
.+..|.+.+-+.+.+++..+..|+. +++.........+..+++-+++....+-..|+.++..+.+.-.+ .+.+ ..
T Consensus 93 ~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~--~i~~--~l 168 (334)
T KOG2933|consen 93 ALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNN--SIDQ--EL 168 (334)
T ss_pred HHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH--HHHH--HH
Confidence 3455555666667777777777766 34333333334667777778777777888888888888765433 2222 33
Q ss_pred HHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCcccccccccCcccchhhhHHHHHHHHcCCCCHHHHHHHHHHH
Q 001733 561 QVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYMLKNSTPDELNVHLIRIL 638 (1019)
Q Consensus 561 ~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL~~~~~~~v~~~a~~aL 638 (1019)
..++..|...... ...-+++.|..+|..+..... -..+++.|+..+++ ..+.++..++.++
T Consensus 169 d~lv~~Ll~ka~~-dnrFvreda~kAL~aMV~~vt---------------p~~~L~~L~~~~~~-~n~r~r~~a~~~~ 229 (334)
T KOG2933|consen 169 DDLVTQLLHKASQ-DNRFVREDAEKALVAMVNHVT---------------PQKLLRKLIPILQH-SNPRVRAKAALCF 229 (334)
T ss_pred HHHHHHHHhhhcc-cchHHHHHHHHHHHHHHhccC---------------hHHHHHHHHHHHhh-hchhhhhhhhccc
Confidence 4444433322211 223567888888888776532 24567888888888 7777776654443
No 372
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=36.60 E-value=67 Score=31.20 Aligned_cols=71 Identities=30% Similarity=0.309 Sum_probs=55.7
Q ss_pred ChHHHHHHhhcCCHHHHHHHHHHHHhhccCC-hhHHHHHHhcCCHHHHHHHhcCCCh-h---HHHHHHHHHHHhcc
Q 001733 351 VLPLLTKLLEYKDRNVRCAAMELLRQLVVED-DEGKEMIAETMDISILIKLLSSSHR-P---VRHESLLLLLELSS 421 (1019)
Q Consensus 351 ~i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~-~~~k~~I~~~g~i~~Lv~lL~~~~~-~---~r~~Aa~~L~~Ls~ 421 (1019)
++..|.+-|.++++.++..|+..|-.+.+.. +.....+.....+..|+.++.+... . +++.+..+|...+.
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 4667788899999999999999999998655 4557777777889999998876433 3 78888888776643
No 373
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=35.61 E-value=69 Score=35.50 Aligned_cols=59 Identities=20% Similarity=0.236 Sum_probs=49.3
Q ss_pred hccchHHHHhhhccCchhhHHHHHHHHHhhhccCcc-----------hhhHHHHHHhccchHHHHHHHhh
Q 001733 887 DAKAVDRLLACLYHENVEVVEAALSALCTLLDEKVD-----------VDKSVSMLSEVNAIQHVLNVVKE 945 (1019)
Q Consensus 887 ~~gai~~Lv~lL~~~d~~v~~~Al~AL~~L~~d~~~-----------~~~~~~~i~~~~~i~~l~~lL~~ 945 (1019)
+..-|..+++-|++.+...+..|+.+|+.+++..-. ..+++..+.++||++++.++|..
T Consensus 58 ~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 58 RKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 355689999999999999999999999999975221 34678889999999999999874
No 374
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=35.42 E-value=73 Score=30.71 Aligned_cols=70 Identities=13% Similarity=0.141 Sum_probs=51.6
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhCcCCChhHHHHhhhcCCChhHhhcccCCCCcChHHHHHHHHHHhcc
Q 001733 662 YSLLEVINNPHDELAVAAIKLLTTLSPYLGHTLVERLCKTRGQPENLIQCPTETIHITEKQAVSAKFLAKL 732 (1019)
Q Consensus 662 ~~Lv~LL~~~~~~vr~~A~~~L~~Ls~~~~~~~~~~l~~~~g~i~~LV~lL~~~~~~~~~~~~A~~~L~nL 732 (1019)
..|..-|.++++.++..|+.+|-.+..+++..+...+.. .+.+..|++++........++..++.++..-
T Consensus 40 r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s-~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W 109 (133)
T smart00288 40 RLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVAS-KEFLNELVKLIKPKYPLPLVKKRILELIQEW 109 (133)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHh-HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence 345566778999999999999999998888887777764 3688899998877663223666665555443
No 375
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=35.04 E-value=44 Score=32.90 Aligned_cols=48 Identities=17% Similarity=0.253 Sum_probs=34.7
Q ss_pred CccccccCcccCCCceecCCCc-----cccHHHHHHHHhhhccCCCCCCCCCCCCCC
Q 001733 232 ETFYCPLTKEIMDDPVTIESGV-----TYERNAITAWFEKFETSGDIFCPTTGKKLM 283 (1019)
Q Consensus 232 ~~~~Cpi~~~~m~dPv~~~~g~-----t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~ 283 (1019)
.+..|=||.+-.. +..-||.. -.=++|+++|... ++...||.|+.++.
T Consensus 7 ~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~---s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 7 MDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINT---SKNKSCKICNGPYN 59 (162)
T ss_pred CCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhc---CCCCcccccCCeEE
Confidence 3457888877643 44457753 3378999999997 36788999998764
No 376
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=34.79 E-value=1.4e+02 Score=29.31 Aligned_cols=74 Identities=8% Similarity=0.043 Sum_probs=60.7
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHHHHhhcCCcc--hHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcC
Q 001733 517 RAASTLIRMVHSGNSLTRRIAFKALMQISSHHPS--CKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESG 594 (1019)
Q Consensus 517 ~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~--~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~ 594 (1019)
.++..|.+-|.++++.++..|+..|-.+..+.+. +..+.....+..|+.++... .+..+++++..++...+...
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~----~~~~Vk~kil~li~~W~~~f 112 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDR----VHPTVKEKLREVVKQWADEF 112 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhccc----CCHHHHHHHHHHHHHHHHHh
Confidence 4678888888899999999999999999988765 66777888899999988764 23689999999888876653
No 377
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=34.70 E-value=6.2e+02 Score=27.34 Aligned_cols=83 Identities=18% Similarity=0.149 Sum_probs=50.6
Q ss_pred HhcCCHHHHHHHhcCCChh--------HHHHHHHHHHHhccChhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHH
Q 001733 389 AETMDISILIKLLSSSHRP--------VRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQIL 460 (1019)
Q Consensus 389 ~~~g~i~~Lv~lL~~~~~~--------~r~~Aa~~L~~Ls~~~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL 460 (1019)
.+..+.|+++++++.++.. +-+.-..+|..+ ..|-+..|-.++.++.-+.-++..|..+|
T Consensus 70 re~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv------------~~G~~~~L~~li~~~~~~~yvR~aa~~aL 137 (249)
T PF06685_consen 70 REERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASV------------GDGDIEPLKELIEDPDADEYVRMAAISAL 137 (249)
T ss_pred hhhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHH------------hCCCHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 3567899999999765431 111222222221 26778888888876666777788888888
Q ss_pred HHhcC-CCCchHHHHhcCChHHHHHH
Q 001733 461 RNLER-NPDNIKCMAENGLLEPLMHH 485 (1019)
Q Consensus 461 ~nLs~-~~~n~~~i~~~G~i~~Lv~l 485 (1019)
..+.. .+.-|..+++ .+..++..
T Consensus 138 ~~l~~~~~~~Re~vi~--~f~~ll~~ 161 (249)
T PF06685_consen 138 AFLVHEGPISREEVIQ--YFRELLNY 161 (249)
T ss_pred HHHHHcCCCCHHHHHH--HHHHHHHH
Confidence 88874 3444665554 34444443
No 378
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=34.63 E-value=37 Score=23.04 Aligned_cols=13 Identities=38% Similarity=0.363 Sum_probs=11.2
Q ss_pred HHHHHHHHHHhhh
Q 001733 817 EVQKLAAIGLENL 829 (1019)
Q Consensus 817 ~vk~~AA~aL~nL 829 (1019)
.+|..|+++|+++
T Consensus 2 ~vR~~aa~aLg~~ 14 (30)
T smart00567 2 LVRHEAAFALGQL 14 (30)
T ss_pred HHHHHHHHHHHHc
Confidence 5789999999887
No 379
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=34.48 E-value=4.7e+02 Score=28.25 Aligned_cols=74 Identities=16% Similarity=0.289 Sum_probs=47.8
Q ss_pred HHhcCChHHHHHHhccCCH--------HHHHHHHHHHHHhccCcccccccccchHHHHHHHHhcCCh--HHHHHHHHHHH
Q 001733 473 MAENGLLEPLMHHLNEGSE--------EIQMEMASYLGEIVLGHDSKINVPGRAASTLIRMVHSGNS--LTRRIAFKALM 542 (1019)
Q Consensus 473 i~~~G~i~~Lv~lL~~~~~--------~~~~~aa~~L~~La~~~~~~~~i~~~~i~~Lv~lL~~~~~--~~~~~A~~aL~ 542 (1019)
+.+.-++|+++++++.++. -+.+....+|+.+ ++|-+++|-+++.+++. -+|..|+++|.
T Consensus 69 ~re~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv----------~~G~~~~L~~li~~~~~~~yvR~aa~~aL~ 138 (249)
T PF06685_consen 69 FREERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASV----------GDGDIEPLKELIEDPDADEYVRMAAISALA 138 (249)
T ss_pred HhhhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHH----------hCCCHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 3456789999999975442 1222333344433 23447888888887653 47888899998
Q ss_pred HhhcCCcc-hHHHHH
Q 001733 543 QISSHHPS-CKILVE 556 (1019)
Q Consensus 543 ~Ls~~~~~-~~~l~~ 556 (1019)
.+...++. |..+++
T Consensus 139 ~l~~~~~~~Re~vi~ 153 (249)
T PF06685_consen 139 FLVHEGPISREEVIQ 153 (249)
T ss_pred HHHHcCCCCHHHHHH
Confidence 88876654 666553
No 380
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=34.48 E-value=18 Score=28.42 Aligned_cols=13 Identities=23% Similarity=0.634 Sum_probs=11.4
Q ss_pred CCCCccccccCcc
Q 001733 229 PLYETFYCPLTKE 241 (1019)
Q Consensus 229 ~~~~~~~Cpi~~~ 241 (1019)
.+|+++.||+|+.
T Consensus 30 ~Lp~~w~CP~C~a 42 (50)
T cd00730 30 DLPDDWVCPVCGA 42 (50)
T ss_pred HCCCCCCCCCCCC
Confidence 4899999999974
No 381
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=34.38 E-value=6.4e+02 Score=27.43 Aligned_cols=177 Identities=17% Similarity=0.119 Sum_probs=100.0
Q ss_pred CChHHHHHHhhcCCHHHHHHHHHHHHhhccC-------ChhHHHHHHhcCCHHHHHHHhcCCC----hhHHHHHHHHHHH
Q 001733 350 GVLPLLTKLLEYKDRNVRCAAMELLRQLVVE-------DDEGKEMIAETMDISILIKLLSSSH----RPVRHESLLLLLE 418 (1019)
Q Consensus 350 g~i~~Lv~lL~s~~~~~~~~Al~~L~~La~~-------~~~~k~~I~~~g~i~~Lv~lL~~~~----~~~r~~Aa~~L~~ 418 (1019)
|.-+.+.+=|.| +...+.++..|..|+.. ++++|-.+.-.+.+|.++.-+..++ ...-...|..|..
T Consensus 64 Glq~Ll~KGL~S--s~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~ 141 (262)
T PF14225_consen 64 GLQPLLLKGLRS--SSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQ 141 (262)
T ss_pred hHHHHHhCccCC--CCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHH
Confidence 333334443443 34555666666666532 1223433333455677776666665 1334566677777
Q ss_pred hccChhhhhhhhcccchHHHHHHhhhcC--CCChHHHHHHHHHHHHhcCCCCchHHHHhcCChHHHHHHhccCCHHHHHH
Q 001733 419 LSSTRSLCEKIGSIPGGILVLITFKFNW--SIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQME 496 (1019)
Q Consensus 419 Ls~~~~~~~~i~~~~g~I~~LV~lL~~~--~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~lL~~~~~~~~~~ 496 (1019)
++... ..+.+..+......+ .+..+-.+.++..|++-.. ++ .+...+-.|+.+|..+.+.++..
T Consensus 142 ~a~~~--------~~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~-P~-----~~~~~l~~Ll~lL~n~~~w~~~~ 207 (262)
T PF14225_consen 142 VAEAQ--------GLPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF-PD-----HEFQILTFLLGLLENGPPWLRRK 207 (262)
T ss_pred HHHhC--------CCccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC-ch-----hHHHHHHHHHHHHhCCcHHHHHH
Confidence 76321 122333333333211 1222334455555553221 11 12235567899999999999999
Q ss_pred HHHHHHHhccCcccccccccchHHHHHHHHhcCChHHHHHHHHHHHHhh
Q 001733 497 MASYLGEIVLGHDSKINVPGRAASTLIRMVHSGNSLTRRIAFKALMQIS 545 (1019)
Q Consensus 497 aa~~L~~La~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls 545 (1019)
.+.+|..+-..-+.+...+.+.+.+|++++..+ .-..|+.+|-+.-
T Consensus 208 ~L~iL~~ll~~~d~~~~~~~dlispllrlL~t~---~~~eAL~VLd~~v 253 (262)
T PF14225_consen 208 TLQILKVLLPHVDMRSPHGADLISPLLRLLQTD---LWMEALEVLDEIV 253 (262)
T ss_pred HHHHHHHHhccccCCCCcchHHHHHHHHHhCCc---cHHHHHHHHHHHH
Confidence 999999988766666555556799999999764 3445666665543
No 382
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.15 E-value=1.7e+02 Score=32.28 Aligned_cols=141 Identities=11% Similarity=0.162 Sum_probs=88.4
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHHHHhhcCCcc-hHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCC
Q 001733 518 AASTLIRMVHSGNSLTRRIAFKALMQISSHHPS-CKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLE 596 (1019)
Q Consensus 518 ~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~-~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~ 596 (1019)
++...+..|.+.+-..+-.++..+..|+..+.. ...+.. -++..+++-+.+.. ..+-+.|+.++..+...-.+
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlR-----S~VsraA~~t~~difs~ln~ 162 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLR-----SAVSRAACMTLADIFSSLNN 162 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChH-----HHHHHHHHHHHHHHHHHHHH
Confidence 466667777777777777888888888876642 222222 23444445455432 35667777778877765332
Q ss_pred cccccccccCcccchhhhHHHHH-HHHcCC--CCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCCCH
Q 001733 597 HHSLQVNSHGHTMVSDYVVYNII-YMLKNS--TPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHD 673 (1019)
Q Consensus 597 ~~~~~v~~~g~~l~~~~~i~~Ll-~LL~~~--~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~ 673 (1019)
. +. . ....++ .|+... ++.-+++.|-++|-.+..+-.+ +..++.|+..+.+.++
T Consensus 163 ~-----------i~-~-~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp----------~~~L~~L~~~~~~~n~ 219 (334)
T KOG2933|consen 163 S-----------ID-Q-ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP----------QKLLRKLIPILQHSNP 219 (334)
T ss_pred H-----------HH-H-HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh----------HHHHHHHHHHHhhhch
Confidence 2 11 1 223333 333331 4456899999999999887665 2345678888889999
Q ss_pred HHHHHHHHHHHHhC
Q 001733 674 ELAVAAIKLLTTLS 687 (1019)
Q Consensus 674 ~vr~~A~~~L~~Ls 687 (1019)
.++..++.++.+.-
T Consensus 220 r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 220 RVRAKAALCFSRCV 233 (334)
T ss_pred hhhhhhhccccccc
Confidence 99988877665544
No 383
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=33.43 E-value=87 Score=28.11 Aligned_cols=67 Identities=18% Similarity=0.161 Sum_probs=49.7
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHhcCCChhHHHHHHHHHHHhccC
Q 001733 354 LLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSSHRPVRHESLLLLLELSST 422 (1019)
Q Consensus 354 ~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~ 422 (1019)
..+..|.++.+.+|-+++..|+.|....+ ...+-..+.+..+...|++.++-+--+|+..|..|+..
T Consensus 7 ~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~ 73 (92)
T PF10363_consen 7 EALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADR 73 (92)
T ss_pred HHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence 34556778889999999999999975443 11222245677778888888888888999888888653
No 384
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=33.31 E-value=13 Score=38.56 Aligned_cols=47 Identities=26% Similarity=0.439 Sum_probs=35.1
Q ss_pred CccccccCc-ccCCCcee--c--C-CCccccHHHHHHHHhhhccCCCCCCC--CCCCCC
Q 001733 232 ETFYCPLTK-EIMDDPVT--I--E-SGVTYERNAITAWFEKFETSGDIFCP--TTGKKL 282 (1019)
Q Consensus 232 ~~~~Cpi~~-~~m~dPv~--~--~-~g~t~~r~~I~~~~~~~~~~~~~~cP--~~~~~l 282 (1019)
.+-.||+|. +.+-.|-+ + | |=|..|-+|.-+.|.. |+..|| -|++-|
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~----GpAqCP~~gC~kIL 63 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSR----GPAQCPYKGCGKIL 63 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcC----CCCCCCCccHHHHH
Confidence 467899997 34455543 2 4 8899999999999998 788899 565544
No 385
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=33.17 E-value=8.9e+02 Score=28.73 Aligned_cols=77 Identities=14% Similarity=0.025 Sum_probs=46.2
Q ss_pred ChhHHHHHHHHHHHhccChhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHHHhcCChHHHHH
Q 001733 405 HRPVRHESLLLLLELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMH 484 (1019)
Q Consensus 405 ~~~~r~~Aa~~L~~Ls~~~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~ 484 (1019)
..++|..+..+|..+...+...-.+.+ ..+.+.+. ....++....-..+|..|+.+..+... .+.+..|.|..
T Consensus 42 p~e~R~~~~~ll~~~i~~~~~~~~~~R-----~~fF~~I~-~~~~~~d~~~~l~aL~~LT~~Grdi~~-~~~~i~~~L~~ 114 (464)
T PF11864_consen 42 PSEARRAALELLIACIKRQDSSSGLMR-----AEFFRDIS-DPSNDDDFDLRLEALIALTDNGRDIDF-FEYEIGPFLLS 114 (464)
T ss_pred CHHHHHHHHHHHHHHHHccccccHHHH-----HHHHHHHh-cCCCchhHHHHHHHHHHHHcCCcCchh-cccchHHHHHH
Confidence 347888888888888765433111111 11122222 233344455667888888887776633 67788888888
Q ss_pred Hhcc
Q 001733 485 HLNE 488 (1019)
Q Consensus 485 lL~~ 488 (1019)
.|..
T Consensus 115 wl~~ 118 (464)
T PF11864_consen 115 WLEP 118 (464)
T ss_pred HHHH
Confidence 8853
No 386
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=32.74 E-value=30 Score=44.40 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=34.8
Q ss_pred cccccCccc-----CCCceec--CCCccccHHHHHHHHhhhccCCCCCCCCCCCCCC
Q 001733 234 FYCPLTKEI-----MDDPVTI--ESGVTYERNAITAWFEKFETSGDIFCPTTGKKLM 283 (1019)
Q Consensus 234 ~~Cpi~~~~-----m~dPv~~--~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~ 283 (1019)
-.|.||++- .-+|.+. .||.-.||.|.|-=-++ |+..||.|+....
T Consensus 18 qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~e----G~q~CPqCktrYk 70 (1079)
T PLN02638 18 QVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKD----GNQSCPQCKTKYK 70 (1079)
T ss_pred ceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhc----CCccCCccCCchh
Confidence 379999974 3447665 78888999999544444 7899999998764
No 387
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=32.63 E-value=21 Score=39.10 Aligned_cols=26 Identities=15% Similarity=0.446 Sum_probs=17.4
Q ss_pred ccccccCcccCC--Cceec-CCCccccHH
Q 001733 233 TFYCPLTKEIMD--DPVTI-ESGVTYERN 258 (1019)
Q Consensus 233 ~~~Cpi~~~~m~--dPv~~-~~g~t~~r~ 258 (1019)
.|.||+|++-|. +.-.. ++||+|+..
T Consensus 2 ~~~CP~C~~~l~~~~~~~~C~~~h~fd~a 30 (272)
T PRK11088 2 SYQCPLCHQPLTLEENSWICPQNHQFDCA 30 (272)
T ss_pred cccCCCCCcchhcCCCEEEcCCCCCCccc
Confidence 389999999885 22222 557777654
No 388
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=32.18 E-value=21 Score=27.58 Aligned_cols=13 Identities=23% Similarity=0.634 Sum_probs=8.4
Q ss_pred CCCCccccccCcc
Q 001733 229 PLYETFYCPLTKE 241 (1019)
Q Consensus 229 ~~~~~~~Cpi~~~ 241 (1019)
.+|+++.||+|+-
T Consensus 30 ~Lp~~w~CP~C~a 42 (47)
T PF00301_consen 30 DLPDDWVCPVCGA 42 (47)
T ss_dssp GS-TT-B-TTTSS
T ss_pred HCCCCCcCcCCCC
Confidence 5899999999974
No 389
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=31.96 E-value=2.1e+02 Score=27.86 Aligned_cols=77 Identities=9% Similarity=-0.003 Sum_probs=58.0
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHHHHhhcCCcc--hHHHHHcCcHHHHHHHHhhhcc-CCCChhHHHHHHHHHHHHHhc
Q 001733 517 RAASTLIRMVHSGNSLTRRIAFKALMQISSHHPS--CKILVEAGIVQVMAEEMFIRII-HNEPMNSKEEAAAILANILES 593 (1019)
Q Consensus 517 ~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~--~~~l~~~G~v~~Lv~lL~~~~~-~~~~~~~~~~A~~~L~~L~~~ 593 (1019)
.++..|.+-|.++++.++-.|+.+|-.+..+... +..+...+.+..|+.++..... ...+..++.+...++..-+..
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLE 117 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4677788888999999999999999999877654 6677778889899998853210 113468899988877765543
No 390
>PLN02436 cellulose synthase A
Probab=31.43 E-value=32 Score=44.06 Aligned_cols=46 Identities=15% Similarity=0.247 Sum_probs=34.9
Q ss_pred cccccCccc-----CCCceec--CCCccccHHHHHHHHhhhccCCCCCCCCCCCCCC
Q 001733 234 FYCPLTKEI-----MDDPVTI--ESGVTYERNAITAWFEKFETSGDIFCPTTGKKLM 283 (1019)
Q Consensus 234 ~~Cpi~~~~-----m~dPv~~--~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~ 283 (1019)
-.|.||++= .-+|.+. .||.-.||.|.|-=-++ |+..||.|+....
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~e----g~~~Cpqckt~Y~ 89 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERRE----GNQACPQCKTRYK 89 (1094)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhc----CCccCcccCCchh
Confidence 379999974 3346665 67888999999654445 7899999998764
No 391
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=31.37 E-value=1.5e+02 Score=29.10 Aligned_cols=29 Identities=31% Similarity=0.132 Sum_probs=19.2
Q ss_pred hHHHHHHhhhcCCCChHHHHHHHHHHHHhcC
Q 001733 435 GILVLITFKFNWSIDVFAAEIADQILRNLER 465 (1019)
Q Consensus 435 ~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~ 465 (1019)
-|.+||.+|. ++|.+....|+.+|.+-..
T Consensus 95 NV~~LI~~L~--~~d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 95 NVQPLIDLLK--SDDEELAEEAAEALKNTLL 123 (154)
T ss_dssp THHHHHHGG----G-TTTHHHHHHHHHT--T
T ss_pred cHHHHHHHHc--CCcHHHHHHHHHHHHhhHH
Confidence 5788888884 5677788888888887654
No 392
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=31.16 E-value=31 Score=25.40 Aligned_cols=33 Identities=15% Similarity=0.267 Sum_probs=21.2
Q ss_pred CccccccCcccCCCceecCCCccccHHHHHHHHhhhccCCCCCCCCCCCCC
Q 001733 232 ETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKL 282 (1019)
Q Consensus 232 ~~~~Cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l 282 (1019)
.+|.||-|+..|.-..-... . ....||.|+..+
T Consensus 4 Y~y~C~~Cg~~fe~~~~~~~--------------~----~~~~CP~Cg~~~ 36 (41)
T smart00834 4 YEYRCEDCGHTFEVLQKISD--------------D----PLATCPECGGDV 36 (41)
T ss_pred EEEEcCCCCCEEEEEEecCC--------------C----CCCCCCCCCCcc
Confidence 57899988887764432211 1 345799998843
No 393
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.79 E-value=39 Score=38.92 Aligned_cols=45 Identities=16% Similarity=0.234 Sum_probs=30.3
Q ss_pred ccccccCc-ccCCCce---ecCCCccccHHHHHHHHhhhc-cCCCCCCCC
Q 001733 233 TFYCPLTK-EIMDDPV---TIESGVTYERNAITAWFEKFE-TSGDIFCPT 277 (1019)
Q Consensus 233 ~~~Cpi~~-~~m~dPv---~~~~g~t~~r~~I~~~~~~~~-~~~~~~cP~ 277 (1019)
...|+||. +.+...- +.-|||-||..|..++++.-. .+....||.
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~ 195 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPH 195 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCC
Confidence 46799998 4333312 457999999999999998522 223455665
No 394
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=30.79 E-value=32 Score=28.34 Aligned_cols=13 Identities=23% Similarity=0.861 Sum_probs=9.9
Q ss_pred ccHHHHHHHHhhh
Q 001733 255 YERNAITAWFEKF 267 (1019)
Q Consensus 255 ~~r~~I~~~~~~~ 267 (1019)
|||.|+.+|...-
T Consensus 12 FCRNCLskWy~~a 24 (68)
T PF06844_consen 12 FCRNCLSKWYREA 24 (68)
T ss_dssp --HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999863
No 395
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=30.55 E-value=36 Score=24.34 Aligned_cols=10 Identities=30% Similarity=0.564 Sum_probs=7.7
Q ss_pred CCCCCCCCCC
Q 001733 272 DIFCPTTGKK 281 (1019)
Q Consensus 272 ~~~cP~~~~~ 281 (1019)
...||+|+.+
T Consensus 18 p~~CP~Cg~~ 27 (34)
T cd00729 18 PEKCPICGAP 27 (34)
T ss_pred CCcCcCCCCc
Confidence 4579999875
No 396
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=30.24 E-value=40 Score=38.10 Aligned_cols=39 Identities=26% Similarity=0.429 Sum_probs=26.4
Q ss_pred ecCCCccccH-----HHHHHHHhhhc-c-------CCCCCCCCCCCCCCCCC
Q 001733 248 TIESGVTYER-----NAITAWFEKFE-T-------SGDIFCPTTGKKLMSRG 286 (1019)
Q Consensus 248 ~~~~g~t~~r-----~~I~~~~~~~~-~-------~~~~~cP~~~~~l~~~~ 286 (1019)
.-+|++-||| +|+-+||.+-+ + ++..+||.||.++.-.+
T Consensus 303 ~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilD 354 (358)
T PF10272_consen 303 EPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILD 354 (358)
T ss_pred CCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeee
Confidence 3456666655 79999998643 1 13458999999876443
No 397
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=30.19 E-value=7.4e+02 Score=26.91 Aligned_cols=213 Identities=18% Similarity=0.217 Sum_probs=112.9
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHhcC--CChhHHHHHHHHHHHhccChhhhhhhhcc
Q 001733 355 LTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSS--SHRPVRHESLLLLLELSSTRSLCEKIGSI 432 (1019)
Q Consensus 355 Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL~~--~~~~~r~~Aa~~L~~Ls~~~~~~~~i~~~ 432 (1019)
|-..|.++|..+|.+|+..|......-+... ....-+..|+....+ .|......++..|..|.......
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~------ 74 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFS------ 74 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCC------
Confidence 4456778899999999988887543322221 222335555555543 34444555566666665432211
Q ss_pred cchHHHHHHhhh----cCCCChHHHHHHHHHHHHhcCCCCchHHHHh--cCChHHHHHHhc-cCCHHHHHHHHHHHHHhc
Q 001733 433 PGGILVLITFKF----NWSIDVFAAEIADQILRNLERNPDNIKCMAE--NGLLEPLMHHLN-EGSEEIQMEMASYLGEIV 505 (1019)
Q Consensus 433 ~g~I~~LV~lL~----~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~--~G~i~~Lv~lL~-~~~~~~~~~aa~~L~~La 505 (1019)
.+.+..+++-+. -++-....+..+...|..|..+. ...+.. .+.+..+++... +.+|+-...+-..+..+.
T Consensus 75 ~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~--~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~ 152 (262)
T PF14500_consen 75 PESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENH--REALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVIL 152 (262)
T ss_pred hhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHh--HHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 112223333221 11222345666667777775432 222222 246667777776 457887777777777665
Q ss_pred cCcccccccccchHHHHHHHHhc----------CCh--HHHHHHHHHHHH-hhcCCcchHHHHHcCcHHHHHHHHhhhcc
Q 001733 506 LGHDSKINVPGRAASTLIRMVHS----------GNS--LTRRIAFKALMQ-ISSHHPSCKILVEAGIVQVMAEEMFIRII 572 (1019)
Q Consensus 506 ~~~~~~~~i~~~~i~~Lv~lL~~----------~~~--~~~~~A~~aL~~-Ls~~~~~~~~l~~~G~v~~Lv~lL~~~~~ 572 (1019)
..-+ + ....+.+.+.+.. +++ -.++.-..+|.+ |++.+ ....-++|.|++-|.+..
T Consensus 153 ~~~~----~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~-----~fa~~~~p~LleKL~s~~- 221 (262)
T PF14500_consen 153 QEFD----I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTP-----LFAPFAFPLLLEKLDSTS- 221 (262)
T ss_pred Hhcc----c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcH-----hhHHHHHHHHHHHHcCCC-
Confidence 5322 2 2234555555432 122 123333333433 33332 223456888888887543
Q ss_pred CCCChhHHHHHHHHHHHHHhc
Q 001733 573 HNEPMNSKEEAAAILANILES 593 (1019)
Q Consensus 573 ~~~~~~~~~~A~~~L~~L~~~ 593 (1019)
..+|..+..+|...+..
T Consensus 222 ----~~~K~D~L~tL~~c~~~ 238 (262)
T PF14500_consen 222 ----PSVKLDSLQTLKACIEN 238 (262)
T ss_pred ----cHHHHHHHHHHHHHHHH
Confidence 46888888888776554
No 398
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=29.69 E-value=4.6 Score=33.85 Aligned_cols=42 Identities=19% Similarity=0.389 Sum_probs=21.1
Q ss_pred ccccccCcccCCCceecCCCccccHHHHHHHHhhhccCCCCCCCCCCCCCCC
Q 001733 233 TFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMS 284 (1019)
Q Consensus 233 ~~~Cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~~ 284 (1019)
+..||.|++-| .-..|+.+|-.|-..+-. ...||.|+++|..
T Consensus 1 e~~CP~C~~~L----~~~~~~~~C~~C~~~~~~------~a~CPdC~~~Le~ 42 (70)
T PF07191_consen 1 ENTCPKCQQEL----EWQGGHYHCEACQKDYKK------EAFCPDCGQPLEV 42 (70)
T ss_dssp --B-SSS-SBE----EEETTEEEETTT--EEEE------EEE-TTT-SB-EE
T ss_pred CCcCCCCCCcc----EEeCCEEECcccccccee------cccCCCcccHHHH
Confidence 36799998853 334467777777443222 2479999998754
No 399
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=29.31 E-value=7.7e+02 Score=26.81 Aligned_cols=216 Identities=17% Similarity=0.157 Sum_probs=117.3
Q ss_pred HHHhhcCCHHHHHHHHHHHHhhcc----CChhHHHHHHh------c-CCHHHHHHHhcCC--ChhHHHHHHHHHHHhccC
Q 001733 356 TKLLEYKDRNVRCAAMELLRQLVV----EDDEGKEMIAE------T-MDISILIKLLSSS--HRPVRHESLLLLLELSST 422 (1019)
Q Consensus 356 v~lL~s~~~~~~~~Al~~L~~La~----~~~~~k~~I~~------~-g~i~~Lv~lL~~~--~~~~r~~Aa~~L~~Ls~~ 422 (1019)
+.+|++..+..=..|+..|..+-. ++++.+..+.+ . |..+.+..++-.| ++...+.+..+|..|...
T Consensus 13 vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~~L~~~ 92 (262)
T PF14225_consen 13 VACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSSTYELTLRLLSRLTPL 92 (262)
T ss_pred HHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCCcHHHHHHHHHHHhcC
Confidence 345555555555556655554321 22233333321 1 3444444444332 345667788888888876
Q ss_pred hhhhhhhhcc--------cchHHHHHHhhhcCC---CChHHHHHHHHHHHHhcCCCCchHHHHhcCChHHHHHHhccC--
Q 001733 423 RSLCEKIGSI--------PGGILVLITFKFNWS---IDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEG-- 489 (1019)
Q Consensus 423 ~~~~~~i~~~--------~g~I~~LV~lL~~~~---~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~lL~~~-- 489 (1019)
+.. .-|+.. .+.+|-+..-+..+. .+ ......+..|..+|...+ .+.+..++.....+
T Consensus 93 ~~~-~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~-~~~~~~A~~La~~a~~~~-------~~~La~il~~ya~~~f 163 (262)
T PF14225_consen 93 PDD-PLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPD-QECIEIAEALAQVAEAQG-------LPNLARILSSYAKGRF 163 (262)
T ss_pred CCc-cccCCCCccHHHHHHHHHHHHHHHhccccccccc-HHHHHHHHHHHHHHHhCC-------CccHHHHHHHHHhcCC
Confidence 543 333332 223333333332222 11 345566677877773211 12223333333322
Q ss_pred --CHHHHHHHHHHHHHhccCcccccccccchHHHHHHHHhcCChHHHHHHHHHHHHhhcCCcchHHHHHcCcHHHHHHHH
Q 001733 490 --SEEIQMEMASYLGEIVLGHDSKINVPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEM 567 (1019)
Q Consensus 490 --~~~~~~~aa~~L~~La~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~~~~l~~~G~v~~Lv~lL 567 (1019)
..+-...++..|..-.. | ...-..+.-|+++|.++.+.++...+.+|..+-..-+.+.. .....+.+|++++
T Consensus 164 r~~~dfl~~v~~~l~~~f~-P----~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~-~~~dlispllrlL 237 (262)
T PF14225_consen 164 RDKDDFLSQVVSYLREAFF-P----DHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP-HGADLISPLLRLL 237 (262)
T ss_pred CCHHHHHHHHHHHHHHHhC-c----hhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC-cchHHHHHHHHHh
Confidence 23444455555543211 1 11113567789999999999999999999999877655433 5566899999988
Q ss_pred hhhccCCCChhHHHHHHHHHHHHHhcC
Q 001733 568 FIRIIHNEPMNSKEEAAAILANILESG 594 (1019)
Q Consensus 568 ~~~~~~~~~~~~~~~A~~~L~~L~~~~ 594 (1019)
.. ..-..|..+|-++....
T Consensus 238 ~t--------~~~~eAL~VLd~~v~~s 256 (262)
T PF14225_consen 238 QT--------DLWMEALEVLDEIVTRS 256 (262)
T ss_pred CC--------ccHHHHHHHHHHHHhhc
Confidence 74 34567888887765543
No 400
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=29.30 E-value=6.3e+02 Score=25.78 Aligned_cols=67 Identities=25% Similarity=0.340 Sum_probs=51.9
Q ss_pred ChHHHHHHhhcCCHHHHHHHHHHHHhhccCChhHHHHHHhc-CCHHHHHHHhcCCChhHHHHHHHHHHHhccCh
Q 001733 351 VLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAET-MDISILIKLLSSSHRPVRHESLLLLLELSSTR 423 (1019)
Q Consensus 351 ~i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~-g~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~~ 423 (1019)
.++.++++.-+.+..++..|+..+....+.. ++.. .++|.++.+..++++.++..|...+.++....
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qG------LvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQG------LVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcC------CCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh
Confidence 3566777777889999999999887664221 1221 26899999999999999999999999996643
No 401
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=29.07 E-value=3.6e+02 Score=27.60 Aligned_cols=141 Identities=17% Similarity=0.137 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHhccChhhhh------hhh-----cccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHHHh-
Q 001733 408 VRHESLLLLLELSSTRSLCE------KIG-----SIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAE- 475 (1019)
Q Consensus 408 ~r~~Aa~~L~~Ls~~~~~~~------~i~-----~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~- 475 (1019)
+|..|..+|..+...-+-|. .+. ...+.-+.|+..+- .+.++.++..|+.+|..|-.....--.+++
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il-~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCIL-KDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHH-cCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 46666666666665411111 111 12345556666654 345778888888888887543321111121
Q ss_pred ----cCC---------------hHHHHHHhc-cCCHHHHHHHHHHHHHhcc-Ccccccc--cccchHHHHHHHHhcCChH
Q 001733 476 ----NGL---------------LEPLMHHLN-EGSEEIQMEMASYLGEIVL-GHDSKIN--VPGRAASTLIRMVHSGNSL 532 (1019)
Q Consensus 476 ----~G~---------------i~~Lv~lL~-~~~~~~~~~aa~~L~~La~-~~~~~~~--i~~~~i~~Lv~lL~~~~~~ 532 (1019)
.+. =..|+..|. +.+..+......+|..|.. .|-.|-. +....+..+-.++.+.++.
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 011 123444454 3456777788889988887 3444432 2223455555677778888
Q ss_pred HHHHHHHHHHHhhcCCc
Q 001733 533 TRRIAFKALMQISSHHP 549 (1019)
Q Consensus 533 ~~~~A~~aL~~Ls~~~~ 549 (1019)
++..++.++..|.+..+
T Consensus 161 v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQP 177 (182)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 99999999988876543
No 402
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=29.06 E-value=8.4e+02 Score=27.19 Aligned_cols=200 Identities=13% Similarity=0.083 Sum_probs=126.7
Q ss_pred HHHhcCChHHHHHHhhcCCHHHHHHHHHHHHhhccCChhHHHHHHh-----cCCHHHHHHHhcCC-ChhHHHHHHHHHHH
Q 001733 345 QVRNVGVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAE-----TMDISILIKLLSSS-HRPVRHESLLLLLE 418 (1019)
Q Consensus 345 ~i~~~g~i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~-----~g~i~~Lv~lL~~~-~~~~r~~Aa~~L~~ 418 (1019)
.+.++|..+.|+..|...+-+.+..++....++-...-..|...++ ...+..++.- .. .++.--.+-..|.+
T Consensus 74 ef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~--~~~~~~iaL~cg~mlrE 151 (342)
T KOG1566|consen 74 EFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG--YENTPEIALTCGNMLRE 151 (342)
T ss_pred HHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh--hccchHHHHHHHHHHHH
Confidence 3567899999999999888888888888777765333333322221 1223333322 12 23444444455666
Q ss_pred hccChhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCC-CchHHHHhcCC----hHHHHHHhccCCHHH
Q 001733 419 LSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNP-DNIKCMAENGL----LEPLMHHLNEGSEEI 493 (1019)
Q Consensus 419 Ls~~~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~-~n~~~i~~~G~----i~~Lv~lL~~~~~~~ 493 (1019)
...++...+.|-. ............ .+.=++...|..+...|.... .....+..... .+.--.+|.+++--+
T Consensus 152 cirhe~LakiiL~-s~~~~~FF~~vq--~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvt 228 (342)
T KOG1566|consen 152 CIRHEFLAKIILE-STNFEKFFLYVQ--LPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVT 228 (342)
T ss_pred HHhhHHHHHHHHc-chhHHHHHHHHh--ccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceeh
Confidence 5555555554433 334444444442 234467778888887775433 23334443333 223455778888889
Q ss_pred HHHHHHHHHHhccCccccccccc-----chHHHHHHHHhcCChHHHHHHHHHHHHhhcCCc
Q 001733 494 QMEMASYLGEIVLGHDSKINVPG-----RAASTLIRMVHSGNSLTRRIAFKALMQISSHHP 549 (1019)
Q Consensus 494 ~~~aa~~L~~La~~~~~~~~i~~-----~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~ 549 (1019)
+..+..+|+.+-.+..|...+.. ..+..++.+|+.++..++-.|..+-+-...++.
T Consensus 229 krqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpn 289 (342)
T KOG1566|consen 229 KRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPN 289 (342)
T ss_pred HHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCC
Confidence 99999999999887777665544 257889999999999999999999988877654
No 403
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.95 E-value=56 Score=37.03 Aligned_cols=63 Identities=13% Similarity=0.175 Sum_probs=41.1
Q ss_pred CccccccCcccCCC---ceecCCCccccHHHHHHHHhhhccCCC---CCCCCCCCCCCCCCCccCHhHHHHHH
Q 001733 232 ETFYCPLTKEIMDD---PVTIESGVTYERNAITAWFEKFETSGD---IFCPTTGKKLMSRGLNTNVALKTTIE 298 (1019)
Q Consensus 232 ~~~~Cpi~~~~m~d---Pv~~~~g~t~~r~~I~~~~~~~~~~~~---~~cP~~~~~l~~~~l~pn~~Lr~~I~ 298 (1019)
.-|.|.||-+-..- =+.+||+|.|||+|...++.....+|. -.||.++= .....| -.+++++.
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C---~~~a~~-g~vKelvg 251 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC---GSVAPP-GQVKELVG 251 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC---cccCCc-hHHHHHHH
Confidence 45889999887654 345699999999999999986553333 24665432 222233 35666654
No 404
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=28.92 E-value=45 Score=32.60 Aligned_cols=27 Identities=33% Similarity=0.377 Sum_probs=21.4
Q ss_pred hHHHHhhhccCchhhHHHHHHHHHhhh
Q 001733 891 VDRLLACLYHENVEVVEAALSALCTLL 917 (1019)
Q Consensus 891 i~~Lv~lL~~~d~~v~~~Al~AL~~L~ 917 (1019)
|.|||.+|.++|+.+...|..+|.+.+
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~Tl 122 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKNTL 122 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT--
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhhH
Confidence 999999999999999999999999755
No 405
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=28.25 E-value=81 Score=29.13 Aligned_cols=77 Identities=21% Similarity=0.261 Sum_probs=47.0
Q ss_pred HhHHHHHHHHHHHchhh---hhhhhhhhhcccCCHHHHHHHHHHHHHHHhcccccchHHHhcCChHHHHHHhhcCCHHHH
Q 001733 291 VALKTTIEEWKDRNDAE---RIKVSRAALSLAGSDRMVLEAIKDLQTVCQRKQYNKVQVRNVGVLPLLTKLLEYKDRNVR 367 (1019)
Q Consensus 291 ~~Lr~~I~~w~~~~~~~---~~~~~~~~l~~~~~~~~~~~Al~~L~~l~~~~~~~r~~i~~~g~i~~Lv~lL~s~~~~~~ 367 (1019)
..+|+++-.|-.+-..+ |+.-.-.+-+.-.|+-+.-..++.+..++... .--..+++.|+++.|+.+|.+.|.++.
T Consensus 26 ~~lkklvl~fek~i~kN~e~R~K~~ddP~KFmdSE~dLd~~Ik~l~~La~~P-~LYp~lv~l~~v~sL~~LL~HeN~DIa 104 (108)
T PF08216_consen 26 AWLKKLVLSFEKRINKNQEMRIKYPDDPEKFMDSEVDLDEEIKKLSVLATAP-ELYPELVELGAVPSLLGLLSHENTDIA 104 (108)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhCCCCHHHHHHhHHHHHHHHHHHHHccCCh-hHHHHHHHcCCHHHHHHHHCCCCccee
Confidence 46788887775442222 22110011111234455567777888777754 445566789999999999998887654
Q ss_pred H
Q 001733 368 C 368 (1019)
Q Consensus 368 ~ 368 (1019)
.
T Consensus 105 i 105 (108)
T PF08216_consen 105 I 105 (108)
T ss_pred h
Confidence 3
No 406
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=27.91 E-value=3.3e+02 Score=24.80 Aligned_cols=61 Identities=15% Similarity=0.235 Sum_probs=43.1
Q ss_pred CChHHHHHHhhcCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHhcCCChhHHHH
Q 001733 350 GVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSSHRPVRHE 411 (1019)
Q Consensus 350 g~i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~r~~ 411 (1019)
+.+..|+.-+.......+..++..|..+. .++.....+.+-|++..+-++=..-++..+..
T Consensus 30 ~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~-~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~ 90 (98)
T PF14726_consen 30 LLLKQLLEWFNFPPVPMKEEVLALLLRLL-KSPYAAQILRDIGAVRFLSKLRPNVEPNLQAE 90 (98)
T ss_pred HHHHHHHHHhCCCCCccHHHHHHHHHHHH-hCcHHHHHHHHccHHHHHHHHHhcCCHHHHHH
Confidence 33445555556677778899999999998 77777788888999888666554444544433
No 407
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=27.64 E-value=30 Score=27.97 Aligned_cols=33 Identities=27% Similarity=0.506 Sum_probs=20.0
Q ss_pred CccccccCcccCCCceecCCCccccHHHHHHHHhhhccCCCCCCCCCCC
Q 001733 232 ETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGK 280 (1019)
Q Consensus 232 ~~~~Cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~ 280 (1019)
-.|.||-|++. +|.-| ..||. ++..++||.|+-
T Consensus 24 ~~F~CPnCG~~----~I~RC--~~CRk----------~~~~Y~CP~CGF 56 (59)
T PRK14890 24 VKFLCPNCGEV----IIYRC--EKCRK----------QSNPYTCPKCGF 56 (59)
T ss_pred CEeeCCCCCCe----eEeec--hhHHh----------cCCceECCCCCC
Confidence 47999999983 12122 11221 345788999975
No 408
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=27.45 E-value=20 Score=27.48 Aligned_cols=37 Identities=24% Similarity=0.259 Sum_probs=22.9
Q ss_pred CCCceec-CCCccccHHHHHHHHhhhccCCCCCCCCCCCCCCC
Q 001733 243 MDDPVTI-ESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMS 284 (1019)
Q Consensus 243 m~dPv~~-~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~~ 284 (1019)
|.+--++ .+.|-.|..|+...+.. ...||+|+++|+.
T Consensus 10 f~~k~Li~C~dHYLCl~CLt~ml~~-----s~~C~iC~~~LPt 47 (50)
T PF03854_consen 10 FANKGLIKCSDHYLCLNCLTLMLSR-----SDRCPICGKPLPT 47 (50)
T ss_dssp S--SSEEE-SS-EEEHHHHHHT-SS-----SSEETTTTEE---
T ss_pred hcCCCeeeecchhHHHHHHHHHhcc-----ccCCCcccCcCcc
Confidence 4454455 45688999999998876 4579999998865
No 409
>PF09806 CDK2AP: Cyclin-dependent kinase 2-associated protein; InterPro: IPR019187 Members of this family of proteins are cell-growth suppressors, associating with and influencing the biological activities of important cell cycle regulators in the S phase including monomeric non-phosphorylated cyclin-dependent kinase 2 (CDK2) and DNA polymerase alpha/primase. An association between mutations in the gene coding for this protein and oral cancer has been described. ; PDB: 2KW6_A.
Probab=27.40 E-value=31 Score=35.22 Aligned_cols=41 Identities=24% Similarity=0.311 Sum_probs=30.9
Q ss_pred HhhhhHHHHhh-hCCCCChhHHHHHHHHHHHHHHHHHHHHhc
Q 001733 44 YRATPVIMELQ-TTKYTPANALEILQSLSKSISLGKDLVAKC 84 (1019)
Q Consensus 44 ~~l~~lleel~-~~~~~~~~~~~~l~~L~~~l~~ak~L~~~c 84 (1019)
.-|+-++||+. |.+|.=...+.+.|.|++.+..|+.||+.|
T Consensus 142 ~~LL~viee~g~~irpty~g~r~~~eRlkr~I~hAr~lvreC 183 (193)
T PF09806_consen 142 AQLLAVIEEMGKDIRPTYAGSRSAMERLKRGIIHARILVREC 183 (193)
T ss_dssp HHHHHHHHHHCCCHHHHHCT-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcCcccccCccHHHHHHHHHHHHHHHHHHH
Confidence 34455669998 444432366889999999999999999999
No 410
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=26.62 E-value=4.6e+02 Score=32.30 Aligned_cols=183 Identities=14% Similarity=0.104 Sum_probs=97.9
Q ss_pred hcCChHHHHHHhhcCCHHHHHHHHHHHHhhccCChhHHHHHHhcCCHHHHHHHhcCCChhHHHHHHHHHHHhccChhhhh
Q 001733 348 NVGVLPLLTKLLEYKDRNVRCAAMELLRQLVVEDDEGKEMIAETMDISILIKLLSSSHRPVRHESLLLLLELSSTRSLCE 427 (1019)
Q Consensus 348 ~~g~i~~Lv~lL~s~~~~~~~~Al~~L~~La~~~~~~k~~I~~~g~i~~Lv~lL~~~~~~~r~~Aa~~L~~Ls~~~~~~~ 427 (1019)
..+.+|.|++++++.|..+|..=+.-+-... +..-..+++....|.+..-+.+.++.+|+.++..+..|+..=..+
T Consensus 328 q~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i---~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~- 403 (690)
T KOG1243|consen 328 QVRIIPVLLKLFKSPDRQIRLLLLQYIEKYI---DHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR- 403 (690)
T ss_pred ccchhhhHHHHhcCcchHHHHHHHHhHHHHh---hhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh-
Confidence 4568999999999999988876665554443 122345567788999999999999999999998888775421111
Q ss_pred hhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHHHhcCC-hHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 001733 428 KIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGL-LEPLMHHLNEGSEEIQMEMASYLGEIVL 506 (1019)
Q Consensus 428 ~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~-i~~Lv~lL~~~~~~~~~~aa~~L~~La~ 506 (1019)
.++. ..+..+-+ ++ ..+++..+.+..-+|...+.+..- .++.++ +-++.+-+++.-...+..+..+|+....
T Consensus 404 ~Ln~--Ellr~~ar-~q-~d~~~~irtntticlgki~~~l~~---~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~ 476 (690)
T KOG1243|consen 404 NLNG--ELLRYLAR-LQ-PDEHGGIRTNTTICLGKIAPHLAA---SVRKRVLASAFTRALKDPFVPARKAGVLALAATQE 476 (690)
T ss_pred hhcH--HHHHHHHh-hC-ccccCcccccceeeecccccccch---hhhccccchhhhhhhcCCCCCchhhhhHHHhhccc
Confidence 1210 11111211 21 123344455555555555433211 112222 2234455555444455555555554433
Q ss_pred CcccccccccchHHHHHHHHhcCChHHHHHHHHHHH
Q 001733 507 GHDSKINVPGRAASTLIRMVHSGNSLTRRIAFKALM 542 (1019)
Q Consensus 507 ~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~A~~aL~ 542 (1019)
..+. ..++...+|.++-+.-+.+..++..|-.++.
T Consensus 477 ~~~~-~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~ 511 (690)
T KOG1243|consen 477 YFDQ-SEVANKILPSLVPLTVDPEKTVRDTAEKAIR 511 (690)
T ss_pred ccch-hhhhhhccccccccccCcccchhhHHHHHHH
Confidence 2211 1222224455555555555555555554443
No 411
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=26.17 E-value=4.4e+02 Score=32.59 Aligned_cols=135 Identities=13% Similarity=0.153 Sum_probs=88.9
Q ss_pred cccccchHHHHHHHHhcCChHHHHHHHHHHHHhhcCCcchHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHH
Q 001733 512 INVPGRAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANIL 591 (1019)
Q Consensus 512 ~~i~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~ 591 (1019)
..+.+..+|.|..-+++.+..+++.++..+-..+..-+ ...++.-++|.|-.+-... ....++.+++.++..+.
T Consensus 384 e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~t----t~~~vkvn~L~c~~~l~ 457 (700)
T KOG2137|consen 384 EEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKT----TNLYVKVNVLPCLAGLI 457 (700)
T ss_pred HHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcc----cchHHHHHHHHHHHHHH
Confidence 34445678888888888889999999999988886544 3556666788887764432 23578888888888888
Q ss_pred hcCCCcccccccccCcccchhhhHHHHHHH---HcCCCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhh
Q 001733 592 ESGLEHHSLQVNSHGHTMVSDYVVYNIIYM---LKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVI 668 (1019)
Q Consensus 592 ~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~L---L~~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL 668 (1019)
+... ...+++.+..+ .+. .+|.+....+++...+......+ ..+.-..++|.++.+.
T Consensus 458 q~lD---------------~~~v~d~~lpi~~~~~~-~dp~iv~~~~~i~~~l~~~~~~g----~ev~~~~VlPlli~ls 517 (700)
T KOG2137|consen 458 QRLD---------------KAAVLDELLPILKCIKT-RDPAIVMGFLRIYEALALIIYSG----VEVMAENVLPLLIPLS 517 (700)
T ss_pred HHHH---------------HHHhHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHhhcccc----eeeehhhhhhhhhhhh
Confidence 5432 23344444444 444 78888888888887776544332 1112235677777776
Q ss_pred cCCC
Q 001733 669 NNPH 672 (1019)
Q Consensus 669 ~~~~ 672 (1019)
-.+.
T Consensus 518 ~~~~ 521 (700)
T KOG2137|consen 518 VAPS 521 (700)
T ss_pred hccc
Confidence 6554
No 412
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=26.13 E-value=32 Score=27.97 Aligned_cols=29 Identities=21% Similarity=0.233 Sum_probs=22.4
Q ss_pred ccccccCcccCCCceecCCCccccHHHHHHH
Q 001733 233 TFYCPLTKEIMDDPVTIESGVTYERNAITAW 263 (1019)
Q Consensus 233 ~~~Cpi~~~~m~dPv~~~~g~t~~r~~I~~~ 263 (1019)
...||+|++.+...-+++. ..-|..|++|
T Consensus 35 ~~~cP~~~~~~~~~~l~~~--~~l~~~i~~~ 63 (63)
T smart00504 35 HGTDPVTGQPLTHEDLIPN--LALKSAIQEW 63 (63)
T ss_pred CCCCCCCcCCCChhhceeC--HHHHHHHHhC
Confidence 5689999999866556654 6778888887
No 413
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=26.10 E-value=39 Score=27.29 Aligned_cols=32 Identities=25% Similarity=0.420 Sum_probs=20.1
Q ss_pred CccccccCcccCCCceecCCCccccHHHHHHHHhhhc-cCCCCCCCCCCC
Q 001733 232 ETFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFE-TSGDIFCPTTGK 280 (1019)
Q Consensus 232 ~~~~Cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~-~~~~~~cP~~~~ 280 (1019)
-.|.||-|++.+ |.-| ..|+ .+..+.||.|+-
T Consensus 26 v~F~CPnCGe~~----I~Rc-------------~~CRk~g~~Y~Cp~CGF 58 (61)
T COG2888 26 VKFPCPNCGEVE----IYRC-------------AKCRKLGNPYRCPKCGF 58 (61)
T ss_pred eEeeCCCCCcee----eehh-------------hhHHHcCCceECCCcCc
Confidence 369999999753 1111 1222 345788999975
No 414
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=26.08 E-value=22 Score=22.37 Aligned_cols=14 Identities=14% Similarity=0.565 Sum_probs=10.3
Q ss_pred cccccCcccCCCce
Q 001733 234 FYCPLTKEIMDDPV 247 (1019)
Q Consensus 234 ~~Cpi~~~~m~dPv 247 (1019)
|.||+|+..|.++.
T Consensus 1 y~C~~C~~~f~~~~ 14 (23)
T PF00096_consen 1 YKCPICGKSFSSKS 14 (23)
T ss_dssp EEETTTTEEESSHH
T ss_pred CCCCCCCCccCCHH
Confidence 56888888777764
No 415
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=26.05 E-value=44 Score=42.80 Aligned_cols=46 Identities=13% Similarity=0.227 Sum_probs=34.9
Q ss_pred cccccCccc-----CCCceec--CCCccccHHHHHHHHhhhccCCCCCCCCCCCCCC
Q 001733 234 FYCPLTKEI-----MDDPVTI--ESGVTYERNAITAWFEKFETSGDIFCPTTGKKLM 283 (1019)
Q Consensus 234 ~~Cpi~~~~-----m~dPv~~--~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~ 283 (1019)
-.|.||++- .-+|.+. .||.-.||.|.+-=.++ |+..||.|+.+..
T Consensus 16 ~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~----g~~~cp~c~t~y~ 68 (1044)
T PLN02915 16 KTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSE----GNQCCPQCNTRYK 68 (1044)
T ss_pred chhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhc----CCccCCccCCchh
Confidence 469999874 4457765 77888999999544444 7899999998764
No 416
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=25.99 E-value=70 Score=29.54 Aligned_cols=42 Identities=19% Similarity=0.227 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhcCCCCchHHHHhcCChHHHHHHhccCCHHHH
Q 001733 453 AEIADQILRNLERNPDNIKCMAENGLLEPLMHHLNEGSEEIQ 494 (1019)
Q Consensus 453 ~~~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~lL~~~~~~~~ 494 (1019)
.......|..|+..++--..+++.|+++.|+.+|.+.+.++.
T Consensus 63 Ld~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIa 104 (108)
T PF08216_consen 63 LDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIA 104 (108)
T ss_pred HHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCccee
Confidence 456677888899999888899999999999999998776553
No 417
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=25.62 E-value=4.9e+02 Score=28.57 Aligned_cols=51 Identities=14% Similarity=0.332 Sum_probs=39.5
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHHHHhhcCCcchH--HHHHcCcHHHHHHHHh
Q 001733 518 AASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCK--ILVEAGIVQVMAEEMF 568 (1019)
Q Consensus 518 ~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~~~--~l~~~G~v~~Lv~lL~ 568 (1019)
.+|+++.++.+.++.+|..++.+|..+..+.+... .+.+.|..+.+-+.+.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~ 172 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALF 172 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHH
Confidence 58999999999999999999999999987655422 4666776666555444
No 418
>PRK05978 hypothetical protein; Provisional
Probab=25.41 E-value=39 Score=33.14 Aligned_cols=32 Identities=22% Similarity=0.478 Sum_probs=23.5
Q ss_pred cccccCcccCCCceecCCCccccHHHHHHHHhhhccCCCCCCCCCCCCCCCC
Q 001733 234 FYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSR 285 (1019)
Q Consensus 234 ~~Cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~~~ 285 (1019)
-+||-|++ |+-|. .+++- +..||.|++.+...
T Consensus 34 grCP~CG~----------G~LF~-----g~Lkv-----~~~C~~CG~~~~~~ 65 (148)
T PRK05978 34 GRCPACGE----------GKLFR-----AFLKP-----VDHCAACGEDFTHH 65 (148)
T ss_pred CcCCCCCC----------Ccccc-----ccccc-----CCCccccCCccccC
Confidence 57999998 66663 34443 57899999988654
No 419
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.18 E-value=1.2e+03 Score=28.88 Aligned_cols=198 Identities=12% Similarity=0.130 Sum_probs=105.9
Q ss_pred chHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhcc--Cccc----ccccccchHHHHHHHHhcCChHHHHHHHHHHH
Q 001733 469 NIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVL--GHDS----KINVPGRAASTLIRMVHSGNSLTRRIAFKALM 542 (1019)
Q Consensus 469 n~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~--~~~~----~~~i~~~~i~~Lv~lL~~~~~~~~~~A~~aL~ 542 (1019)
....|+-.=+=|.|.+-|...+..++.+|+..+.++-= +|+. +..+.+.-..-|.++|+++-|.++-.|..-+.
T Consensus 166 gVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~ 245 (1005)
T KOG1949|consen 166 GVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVC 245 (1005)
T ss_pred hHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 33344332233567777888899999999999998742 4443 22233344678889999999999887776555
Q ss_pred HhhcCCcchHHHHHcCcHHHHHHHHhhhccCCCChhHHHHHHHHHHHHHhcCCCcccccccccCcccchhhhHHHHHHHH
Q 001733 543 QISSHHPSCKILVEAGIVQVMAEEMFIRIIHNEPMNSKEEAAAILANILESGLEHHSLQVNSHGHTMVSDYVVYNIIYML 622 (1019)
Q Consensus 543 ~Ls~~~~~~~~l~~~G~v~~Lv~lL~~~~~~~~~~~~~~~A~~~L~~L~~~~~~~~~~~v~~~g~~l~~~~~i~~Ll~LL 622 (1019)
...+.- -.++=...+..|+.-+...-..+...+++-..-.-|--+...+..+. .-+.+++.+=..|
T Consensus 246 k~~s~f---We~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~-----------~le~~Lpal~~~l 311 (1005)
T KOG1949|consen 246 KITSKF---WEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHP-----------LLEQLLPALRYSL 311 (1005)
T ss_pred HHHHHH---HHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchh-----------HHHHHHHhcchhh
Confidence 443211 01111112222222222211101112344333333444444443322 1244555666666
Q ss_pred cCCCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHhC
Q 001733 623 KNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTLS 687 (1019)
Q Consensus 623 ~~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~~vr~~A~~~L~~Ls 687 (1019)
.. .+..+|..+...|..+-..... .+..---...++.-|..++.++-+.-+.++.+..
T Consensus 312 ~D-~se~VRvA~vd~ll~ik~vra~------~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~ 369 (1005)
T KOG1949|consen 312 HD-NSEKVRVAFVDMLLKIKAVRAA------KFWKICPMDHILVRLETDSRPVSRRLVSLIFNSF 369 (1005)
T ss_pred hc-cchhHHHHHHHHHHHHHhhhhh------hhhccccHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 66 7888999988888877432110 1112223345555566666666666666666655
No 420
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=25.04 E-value=61 Score=32.62 Aligned_cols=36 Identities=28% Similarity=0.758 Sum_probs=27.8
Q ss_pred ccccccCcccCCCceecCCCccccHHHHHHHHhhhccCCCCCCCCCCCC
Q 001733 233 TFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKK 281 (1019)
Q Consensus 233 ~~~Cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~ 281 (1019)
-..||.||.+|-|-+- -=-..+|-.|... ||...+.
T Consensus 87 IYICPFTGKVF~DNt~-----~nPQDAIYDWvSk--------CPeN~ER 122 (238)
T PF10915_consen 87 IYICPFTGKVFGDNTH-----PNPQDAIYDWVSK--------CPENTER 122 (238)
T ss_pred EEEcCCcCccccCCCC-----CChHHHHHHHHhh--------CCccchh
Confidence 4789999999999642 3358899999998 7775443
No 421
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=25.04 E-value=38 Score=37.85 Aligned_cols=44 Identities=18% Similarity=0.416 Sum_probs=36.4
Q ss_pred ccccccCcccCC--Cce--ecCCCccccHHHHHHHHhhhccCCCCCCCCCC
Q 001733 233 TFYCPLTKEIMD--DPV--TIESGVTYERNAITAWFEKFETSGDIFCPTTG 279 (1019)
Q Consensus 233 ~~~Cpi~~~~m~--dPv--~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~ 279 (1019)
++.|-.|+|.+- |-- -+||.|.|--+|..+++..+ +.++||.|+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n---~~rsCP~Cr 412 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENN---GTRSCPNCR 412 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhC---CCCCCccHH
Confidence 588999999863 322 36999999999999999873 688999997
No 422
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=24.71 E-value=2.8e+02 Score=24.35 Aligned_cols=73 Identities=7% Similarity=0.061 Sum_probs=43.3
Q ss_pred hhhHHHHHHHHHhhhhHHHHhhhCCCCChhHHHHHHHHHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHHHHHHHHh
Q 001733 33 SEKFTEIGCYFYRATPVIMELQTTKYTPANALEILQSLSKSISLGKDLVAKCKRGDHSMSDAELRSTMLQLLGVIRRMGE 112 (1019)
Q Consensus 33 ~~~~~~l~~~l~~l~~lleel~~~~~~~~~~~~~l~~L~~~l~~ak~L~~~c~~~s~~~l~~~~~~i~~~f~~v~~~i~~ 112 (1019)
|.|-..|+.++...-|+++.|..++-.+.+-...+..-.---.+++.|+..-..+ ++..-..|..+.+++..
T Consensus 4 ~~hRe~LV~rI~~v~plLD~Ll~n~~it~E~y~~V~a~~T~qdkmRkLld~v~ak--------G~~~k~~F~~iL~e~~~ 75 (85)
T cd08324 4 KSNRELLVTHIRNTQCLVDNLLKNDYFSTEDAEIVCACPTQPDKVRKILDLVQSK--------GEEVSEYFLYLLQQLAD 75 (85)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhccCCccHHHHHHHHhCCCCHHHHHHHHHHHHhc--------CchHHHHHHHHHHHHHH
Confidence 4566789999999999999999876555554444443333334455554432211 33344455555555554
Q ss_pred h
Q 001733 113 C 113 (1019)
Q Consensus 113 ~ 113 (1019)
+
T Consensus 76 ~ 76 (85)
T cd08324 76 A 76 (85)
T ss_pred h
Confidence 4
No 423
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.56 E-value=40 Score=41.61 Aligned_cols=43 Identities=16% Similarity=0.388 Sum_probs=34.8
Q ss_pred CCCccccccCcccCCCceec-CCCccccHHHHHHHHhhhccCCCCCCCCCCC
Q 001733 230 LYETFYCPLTKEIMDDPVTI-ESGVTYERNAITAWFEKFETSGDIFCPTTGK 280 (1019)
Q Consensus 230 ~~~~~~Cpi~~~~m~dPv~~-~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~ 280 (1019)
+...-.|..|.-.+.=|++- -|||.|-++|.+ + +...||.|.-
T Consensus 837 i~q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~----~~~~CP~C~~ 880 (933)
T KOG2114|consen 837 IFQVSKCSACEGTLDLPFVHFLCGHSYHQHCLE----D----KEDKCPKCLP 880 (933)
T ss_pred eeeeeeecccCCccccceeeeecccHHHHHhhc----c----CcccCCccch
Confidence 33445899999999999876 999999999987 3 4567999965
No 424
>PF00619 CARD: Caspase recruitment domain; InterPro: IPR001315 The caspase recruitment domain domain (CARD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. CARD is related in sequence and structure to the death domain (DD, see IPR000488 from INTERPRO) and the death effector domain (DED, see IPR001875 from INTERPRO), which work in similar pathways and show similar interaction properties []. The CARD domain typically associates with other CARD-containing proteins, forming either dimers or trimers. CARD domains can be found in isolation, or in combination with other domains. Domains associated with CARD include: NACHT (IPR007111 from INTERPRO) (in Nal1 and Bir1), NB-ARC (IPR002182 from INTERPRO) (in Apaf-1), pyrin/dapin domains (IPR004020 from INTERPRO) (in Nal1), leucine-rich repeats () (in Nal1), WD repeats (IPR001680 from INTERPRO) (in Apaf1), Src homology domains (IPR001452 from INTERPRO), PDZ (IPR001478 from INTERPRO), RING, kinase and DD domains []. CARD-containing proteins are involved in apoptosis through their regulation of caspases that contain CARDs in their N-terminal pro-domains, including human caspases 1, 2, 9, 11 and 12 []. CARD-containing proteins are also involved in inflammation through their regulation of NF-kappaB []. The mechanisms by which CARDs activate caspases and NF-kappaB involve the assembly of multi-protein complexes, which can facilitate dimerisation or serve as scaffolds on which proteases and kinases are assembled and activated.; GO: 0005515 protein binding, 0042981 regulation of apoptosis, 0005622 intracellular; PDB: 2NSN_A 2NZ7_B 2DBD_A 4E9M_C 2B1W_A 3YGS_P 2KN6_A 3CRD_A 1DGN_A 3KAT_A ....
Probab=24.28 E-value=2.6e+02 Score=24.14 Aligned_cols=63 Identities=10% Similarity=0.051 Sum_probs=46.7
Q ss_pred chhhHHHHHHHHHhhhhHHHHhhhCCCCChhHHHHHHHHHHHHHHHHHHHHh-ccCcchhhhHH
Q 001733 32 ESEKFTEIGCYFYRATPVIMELQTTKYTPANALEILQSLSKSISLGKDLVAK-CKRGDHSMSDA 94 (1019)
Q Consensus 32 ~~~~~~~l~~~l~~l~~lleel~~~~~~~~~~~~~l~~L~~~l~~ak~L~~~-c~~~s~~~l~~ 94 (1019)
-+++...|++.+..+.+++..|.+.+-.++.-..-+......-.+++.|+.. .+.|++.|-.+
T Consensus 4 L~~~r~~Lv~~l~~~~~ild~L~~~~vlt~~e~e~I~~~~t~~~k~~~LLd~l~~kg~~a~~~F 67 (85)
T PF00619_consen 4 LRKNRQELVEDLDDLDDILDHLLSRGVLTEEEYEEIRSEPTRQDKARKLLDILKRKGPEAFDIF 67 (85)
T ss_dssp HHHTHHHHHHHSSHHHHHHHHHHHTTSSSHHHHHHHHTSSSHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHhHHHHHHHhCcHHHHHHHHHHCCCCCHHHHHHHHccCChHHHHHHHHHHHHHHCHHHHHHH
Confidence 3567888899998888999999988767767676666656667788888777 44666554433
No 425
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=23.96 E-value=2.5e+02 Score=28.70 Aligned_cols=69 Identities=14% Similarity=0.244 Sum_probs=52.8
Q ss_pred hhhHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHcCChHHHHHhhcCCCHHHHHHHHHHHHHhCcC
Q 001733 612 DYVVYNIIYMLKNSTPDELNVHLIRILQCLTKSPKPMATIVSVIKETEASYSLLEVINNPHDELAVAAIKLLTTLSPY 689 (1019)
Q Consensus 612 ~~~i~~Ll~LL~~~~~~~v~~~a~~aL~~La~~~~~~~~i~~~i~~~g~i~~Lv~LL~~~~~~vr~~A~~~L~~Ls~~ 689 (1019)
+..++.++++..+ .+..++..|+..+..+-+..=..+ ..++|.|+.|..++++.++..|..++..+...
T Consensus 7 Qryl~~Il~~~~~-~~~~vr~~Al~~l~~il~qGLvnP--------~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK 75 (187)
T PF12830_consen 7 QRYLKNILELCLS-SDDSVRLAALQVLELILRQGLVNP--------KQCVPTLIALETSPNPSIRSRAYQLLKELHEK 75 (187)
T ss_pred HHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHhcCCCCh--------HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHH
Confidence 3456677777777 889999999999887765322111 13678899999999999999999999999843
No 426
>PF11315 Med30: Mediator complex subunit 30; InterPro: IPR021019 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med30 is a metazoan-specific subunit of Mediator [], having no homologues in yeasts.
Probab=23.86 E-value=5.5e+02 Score=25.37 Aligned_cols=79 Identities=15% Similarity=0.278 Sum_probs=52.6
Q ss_pred chhhHHHHHHHHHhhhhHHHHhh-------hC----CCCChhHH--------------HHHHHHHHHHHHHHHHHHhccC
Q 001733 32 ESEKFTEIGCYFYRATPVIMELQ-------TT----KYTPANAL--------------EILQSLSKSISLGKDLVAKCKR 86 (1019)
Q Consensus 32 ~~~~~~~l~~~l~~l~~lleel~-------~~----~~~~~~~~--------------~~l~~L~~~l~~ak~L~~~c~~ 86 (1019)
+.+.|..+-.+++.+.-||.-|| +. .+.|.+.. .+=+....+...=++|++.+..
T Consensus 43 aqdr~~kl~e~lr~i~~LFkkLRlIYekCne~~~~l~~~~iEsLIP~~~~~~~k~e~~~~s~~~~~~~~er~el~e~v~~ 122 (150)
T PF11315_consen 43 AQDRRNKLQEQLRTIKVLFKKLRLIYEKCNENCQGLEPTPIESLIPYKEEPRNKEEERDSSEEYRQLLEERKELIEQVKQ 122 (150)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHhccccCCccccccccccchhhHHHHHHHHHHHHHHHH
Confidence 67888888888888888888887 21 12222111 1122444566666677776655
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHhhhc
Q 001733 87 GDHSMSDAELRSTMLQLLGVIRRMGECLS 115 (1019)
Q Consensus 87 ~s~~~l~~~~~~i~~~f~~v~~~i~~~L~ 115 (1019)
+.+ +.+.|+.+++.++|+|..-|.
T Consensus 123 KN~-----qLk~iid~lR~~iweIN~ml~ 146 (150)
T PF11315_consen 123 KNQ-----QLKEIIDQLRNIIWEINTMLA 146 (150)
T ss_pred HHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 543 467899999999999988764
No 427
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=23.84 E-value=55 Score=23.14 Aligned_cols=10 Identities=30% Similarity=0.727 Sum_probs=7.6
Q ss_pred CCCCCCCCCC
Q 001733 272 DIFCPTTGKK 281 (1019)
Q Consensus 272 ~~~cP~~~~~ 281 (1019)
...||.|+.+
T Consensus 17 ~~~CP~Cg~~ 26 (33)
T cd00350 17 PWVCPVCGAP 26 (33)
T ss_pred CCcCcCCCCc
Confidence 4679999874
No 428
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=22.98 E-value=1e+03 Score=25.94 Aligned_cols=56 Identities=25% Similarity=0.327 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHhccccc----chHHHhcCChH-HHHHHhhc--CCHHHHHHHHHHHHhhc
Q 001733 323 RMVLEAIKDLQTVCQRKQYN----KVQVRNVGVLP-LLTKLLEY--KDRNVRCAAMELLRQLV 378 (1019)
Q Consensus 323 ~~~~~Al~~L~~l~~~~~~~----r~~i~~~g~i~-~Lv~lL~s--~~~~~~~~Al~~L~~La 378 (1019)
++...++++|..+.+.++.. |.++++.+.++ -|+.+|.+ ++.++-..++..|.+|+
T Consensus 9 ~dcl~~LkdL~r~lr~dd~~~~~v~r~lg~~~iv~~DLiPiL~~~~~~~~l~~~~l~LLV~LT 71 (266)
T PF04821_consen 9 DDCLECLKDLKRFLRRDDEDQRDVRRQLGEWNIVQKDLIPILISYKDDDKLFLACLRLLVNLT 71 (266)
T ss_pred HhHHHHHHHHHHHHHHhCcchHHHHHHHHHhchhhhhHHHHHHhccCchHHHHHHHHHHHHhC
Confidence 45777888887777754433 45566666665 56666654 36888889999999997
No 429
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.82 E-value=39 Score=36.08 Aligned_cols=47 Identities=17% Similarity=0.436 Sum_probs=32.7
Q ss_pred CccccccCcccCCCceecCC----CccccHHHHHHHHhhhccCCCCCCCCC
Q 001733 232 ETFYCPLTKEIMDDPVTIES----GVTYERNAITAWFEKFETSGDIFCPTT 278 (1019)
Q Consensus 232 ~~~~Cpi~~~~m~dPv~~~~----g~t~~r~~I~~~~~~~~~~~~~~cP~~ 278 (1019)
.-++|-+|.|-++|--.+.| +|.||=-|=.+.++.+...+..+||.-
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg~sgevYCPSG 317 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQGASGEVYCPSG 317 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhcCCCceeCCCC
Confidence 44999999999999888877 799985555554443221145567763
No 430
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=22.77 E-value=42 Score=38.96 Aligned_cols=149 Identities=17% Similarity=0.105 Sum_probs=73.5
Q ss_pred HHHHHHHHHhccChhhhhhhhcccchHHHHHHhhhcCCCChHHHHHHHHHHHHhcCCCCchHHHHhcCChHHHHH-Hhcc
Q 001733 410 HESLLLLLELSSTRSLCEKIGSIPGGILVLITFKFNWSIDVFAAEIADQILRNLERNPDNIKCMAENGLLEPLMH-HLNE 488 (1019)
Q Consensus 410 ~~Aa~~L~~Ls~~~~~~~~i~~~~g~I~~LV~lL~~~~~~~~~~~~A~~aL~nLs~~~~n~~~i~~~G~i~~Lv~-lL~~ 488 (1019)
..-+..+..-+.++.++..+|....+|..+..+..+ +..+.+.++.++..++..... -..++. .|..
T Consensus 223 ~~~~~~fv~k~e~e~n~~~iGk~~~~I~~~~~~ieS---~~hvVek~~~~~~s~~~~~~~---------t~ql~k~~l~~ 290 (763)
T KOG4231|consen 223 PLLASTFVKKMEDEGNRSVIGKDENAIRQLISMIES---DQHVVEKACVALSSLARDVGV---------TMQLMKCDLMK 290 (763)
T ss_pred hhHHHHHHHHhhCcccceeecccchhhhhhcccccc---cchhhcccccccccHHHHHHH---------HHHHHHHHhcC
Confidence 334556777778888888898877788887776632 233334443333333211110 111111 1222
Q ss_pred CCHHHHHH----HHHHHHHhccCccccccccc-----chHHHHHHHHhcCChHHHHHHHHHHHHhhcCCcchHHHHH-cC
Q 001733 489 GSEEIQME----MASYLGEIVLGHDSKINVPG-----RAASTLIRMVHSGNSLTRRIAFKALMQISSHHPSCKILVE-AG 558 (1019)
Q Consensus 489 ~~~~~~~~----aa~~L~~La~~~~~~~~i~~-----~~i~~Lv~lL~~~~~~~~~~A~~aL~~Ls~~~~~~~~l~~-~G 558 (1019)
..+.++.. ....+-.+...+.......+ .....|-.+....+++++++|..++.+++-+.++|...+- ..
T Consensus 291 pTe~v~~l~~~~I~~l~~~v~~~~~~s~s~~Qe~~~K~~~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~ 370 (763)
T KOG4231|consen 291 PTETVLKLSSPDIISLLQVVVTLAFVSDSVSQEMLTKDMLKALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPS 370 (763)
T ss_pred cchhhhhhccccHhhHHHHHhcCCchhhhHHhhhhHHHHHHHHHHHhcccChHHHHHHHHHHHHheecccccccccCChH
Confidence 22212111 11122222211111111111 1122222334456899999999999999999888664443 33
Q ss_pred cHHHHHHHHhhh
Q 001733 559 IVQVMAEEMFIR 570 (1019)
Q Consensus 559 ~v~~Lv~lL~~~ 570 (1019)
.-..+++++..+
T Consensus 371 l~~~~~~~i~~~ 382 (763)
T KOG4231|consen 371 LRELLMRLIVTP 382 (763)
T ss_pred HHHHHHHHhccc
Confidence 444556655543
No 431
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=22.64 E-value=55 Score=21.74 Aligned_cols=11 Identities=55% Similarity=1.123 Sum_probs=6.3
Q ss_pred CCCCCCCCCCC
Q 001733 272 DIFCPTTGKKL 282 (1019)
Q Consensus 272 ~~~cP~~~~~l 282 (1019)
..+||.|+.+|
T Consensus 16 ~~fC~~CG~~L 26 (26)
T PF13248_consen 16 AKFCPNCGAKL 26 (26)
T ss_pred cccChhhCCCC
Confidence 34566666543
No 432
>PHA02862 5L protein; Provisional
Probab=22.32 E-value=63 Score=31.19 Aligned_cols=45 Identities=16% Similarity=0.288 Sum_probs=30.6
Q ss_pred ccccCcccCCCceecCCCc-----cccHHHHHHHHhhhccCCCCCCCCCCCCCC
Q 001733 235 YCPLTKEIMDDPVTIESGV-----TYERNAITAWFEKFETSGDIFCPTTGKKLM 283 (1019)
Q Consensus 235 ~Cpi~~~~m~dPv~~~~g~-----t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~ 283 (1019)
.|=||.+-=.++ .-||+. -.-++|+++|+.. +++..||.|+.+..
T Consensus 4 iCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~---S~k~~CeLCkteY~ 53 (156)
T PHA02862 4 ICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINY---SKKKECNLCKTKYN 53 (156)
T ss_pred EEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhc---CCCcCccCCCCeEE
Confidence 466666654333 345532 3458899999986 36789999998764
No 433
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=21.06 E-value=3.4e+02 Score=23.73 Aligned_cols=52 Identities=8% Similarity=0.073 Sum_probs=39.7
Q ss_pred hhhHHHHHHHHHhhhhHHHHhhhCCCCChhHHHHHHHHHHHHHHHHHHHHhc
Q 001733 33 SEKFTEIGCYFYRATPVIMELQTTKYTPANALEILQSLSKSISLGKDLVAKC 84 (1019)
Q Consensus 33 ~~~~~~l~~~l~~l~~lleel~~~~~~~~~~~~~l~~L~~~l~~ak~L~~~c 84 (1019)
+++-+.|..++..+-|+++.|...+-.+++....+..-.--=.+|+.|+...
T Consensus 4 ~~~r~~Li~~v~~v~~ilD~L~~~~Vit~e~~~~I~a~~T~~~kar~Lld~l 55 (82)
T cd08330 4 DQHREALIARVTNVDPILDKLHGKKVITQEQYSEVRAEKTNQEKMRKLFSFV 55 (82)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHCCCCCHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 4677889999999999999999876666666666655555567788887764
No 434
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=21.05 E-value=33 Score=27.41 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=22.9
Q ss_pred ccccccCcccCCCceecCCCccccHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCcc
Q 001733 233 TFYCPLTKEIMDDPVTIESGVTYERNAITAWFEKFETSGDIFCPTTGKKLMSRGLNT 289 (1019)
Q Consensus 233 ~~~Cpi~~~~m~dPv~~~~g~t~~r~~I~~~~~~~~~~~~~~cP~~~~~l~~~~l~p 289 (1019)
.|.||.|++-+.=|-... | ..-.||.|+..|.-....|
T Consensus 2 ~~~CP~CG~~iev~~~~~-G------------------eiV~Cp~CGaeleVv~~~p 39 (54)
T TIGR01206 2 QFECPDCGAEIELENPEL-G------------------ELVICDECGAELEVVSLDP 39 (54)
T ss_pred ccCCCCCCCEEecCCCcc-C------------------CEEeCCCCCCEEEEEeCCC
Confidence 378999999553332111 2 2346999998875444333
No 435
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=20.90 E-value=2.8e+02 Score=26.81 Aligned_cols=75 Identities=16% Similarity=0.211 Sum_probs=53.1
Q ss_pred ccchHHHHhhhccCchhhHHHHHHHHHhhhccCcchhhHHHHHHhccchHHHHHHHhhcChhh---HHHHHHHHHHHHHh
Q 001733 888 AKAVDRLLACLYHENVEVVEAALSALCTLLDEKVDVDKSVSMLSEVNAIQHVLNVVKEHRQEV---LQQKSFWMIERFLV 964 (1019)
Q Consensus 888 ~gai~~Lv~lL~~~d~~v~~~Al~AL~~L~~d~~~~~~~~~~i~~~~~i~~l~~lL~~~~~~~---~~~~A~~aL~~i~~ 964 (1019)
..|+..|-+-|.+.++.++..|+..|-.++.+.. ......+....=+..+.+++....... ++++++.+|...-.
T Consensus 41 kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg--~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 41 KEAARALRKRLKHGNPNVQLLALTLLDALVKNCG--PRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSH--HHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 3478899999999999999999999999997642 112233333344556777666444444 89999999876644
No 436
>PF12205 GIT1_C: G protein-coupled receptor kinase-interacting protein 1 C term; InterPro: IPR022018 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF01412 from PFAM, PF00023 from PFAM, PF08518 from PFAM. GIT1 plays an important role in cell adhesion, motility, cytoskeletal remodeling and membrane trafficking. To perform this function, it localises p21-activated kinase (PAK) and PAK-interactive exchange factor to focal adhesions. Its activation is regulated by interaction between its paxillin-binding C-terminal and the LD motifs of paxillin. The C-terminal folds into a four helix bundle. ; PDB: 2JX0_A.
Probab=20.45 E-value=7.5e+02 Score=23.56 Aligned_cols=72 Identities=17% Similarity=0.246 Sum_probs=46.2
Q ss_pred hhhhhhhHHHHHHHHHHHhhccchhhHHHHHHHHHhhhhHHHHhhhC---CCCChhHHHHHHHHHHHHHHHHHHHHhccC
Q 001733 10 ITSLADSLLESISEITAVCMELESEKFTEIGCYFYRATPVIMELQTT---KYTPANALEILQSLSKSISLGKDLVAKCKR 86 (1019)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~lleel~~~---~~~~~~~~~~l~~L~~~l~~ak~L~~~c~~ 86 (1019)
|+...|.+-.-|-+...+|++-.+++|-.-+.+++.. .-||-.. .+.++.++.+|..|. ..+..|-..|..
T Consensus 14 Vi~~TE~vTk~IqeLl~aAQ~~~~~s~~pcae~I~~a---V~~m~~LfP~~~~~e~vr~~L~~L~---~~~~~Lq~eC~~ 87 (123)
T PF12205_consen 14 VIRRTEQVTKRIQELLRAAQEGRHDSFAPCAERIRSA---VTEMAALFPKDPRSETVRSSLRQLT---SSAYRLQAECQK 87 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---HHHHHHTS-SSB--HHHHHHHHHHH---HHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHH---HHHHHHhCCCccCChHHHHHHHHHH---HHHHHHHHHhcc
Confidence 4555666777788888899988888887777666554 3444432 244557777765554 558888888976
Q ss_pred c
Q 001733 87 G 87 (1019)
Q Consensus 87 ~ 87 (1019)
.
T Consensus 88 ~ 88 (123)
T PF12205_consen 88 A 88 (123)
T ss_dssp -
T ss_pred c
Confidence 4
No 437
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=20.27 E-value=6.6e+02 Score=28.88 Aligned_cols=150 Identities=14% Similarity=0.007 Sum_probs=80.5
Q ss_pred HHHhcCCHHHHHHHhcCCCh-hHHHHHHHHHHHhccChh-hhhhhhcccchHHHHHHhh-hcCCCChHHHHHHHHHHHHh
Q 001733 387 MIAETMDISILIKLLSSSHR-PVRHESLLLLLELSSTRS-LCEKIGSIPGGILVLITFK-FNWSIDVFAAEIADQILRNL 463 (1019)
Q Consensus 387 ~I~~~g~i~~Lv~lL~~~~~-~~r~~Aa~~L~~Ls~~~~-~~~~i~~~~g~I~~LV~lL-~~~~~~~~~~~~A~~aL~nL 463 (1019)
.+.+..-.+-+-+-+...+. .-|..|+.+|..|+..-+ ....+. .+.|..++.-. .+++.+...+..|...+..|
T Consensus 205 ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~--~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~al 282 (370)
T PF08506_consen 205 ELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL--MQYIQQLLQQYASNPSNNWRSKDGALYLIGAL 282 (370)
T ss_dssp HHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHHHHhhCCcccHHHHHHHHHHHHHH
Confidence 33455555555555543333 456777788888875421 111111 12233332211 13456677777888888888
Q ss_pred cCCCC-------------chHHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCcccccccccchHHHHHHHHhcCC
Q 001733 464 ERNPD-------------NIKCMAENGLLEPLMHHLNEGSEEIQMEMASYLGEIVLGHDSKINVPGRAASTLIRMVHSGN 530 (1019)
Q Consensus 464 s~~~~-------------n~~~i~~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~La~~~~~~~~i~~~~i~~Lv~lL~~~~ 530 (1019)
+.... |...+...-++|-|. -=.+..+-++..|+..+...-.. -.+ ....+.+|.++..|.+++
T Consensus 283 a~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~-l~~-~~l~~~~~~l~~~L~~~~ 359 (370)
T PF08506_consen 283 ASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQ-LPK-EQLLQIFPLLVNHLQSSS 359 (370)
T ss_dssp HBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGG-S-H-HHHHHHHHHHHHHTTSS-
T ss_pred HhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhh-CCH-HHHHHHHHHHHHHhCCCC
Confidence 75442 223333444444443 11134567788888877765441 111 122246899999999999
Q ss_pred hHHHHHHHHHH
Q 001733 531 SLTRRIAFKAL 541 (1019)
Q Consensus 531 ~~~~~~A~~aL 541 (1019)
..+...|+.++
T Consensus 360 ~vv~tyAA~~i 370 (370)
T PF08506_consen 360 YVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred cchhhhhhhhC
Confidence 99999988764
No 438
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=20.00 E-value=37 Score=33.34 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=17.2
Q ss_pred CccccccCcccCCCceecCC
Q 001733 232 ETFYCPLTKEIMDDPVTIES 251 (1019)
Q Consensus 232 ~~~~Cpi~~~~m~dPv~~~~ 251 (1019)
++.+||||.|.--+-|++-|
T Consensus 1 ed~~CpICme~PHNAVLLlC 20 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLC 20 (162)
T ss_pred CCccCceeccCCCceEEEEe
Confidence 46789999999999999844
Done!