Query 001734
Match_columns 1019
No_of_seqs 611 out of 2905
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 08:03:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001734.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001734hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0239 Kinesin (KAR3 subfamil 100.0 1.3E-97 3E-102 888.7 44.4 594 225-851 71-668 (670)
2 KOG4280 Kinesin-like protein [ 100.0 1.8E-85 3.9E-90 761.6 25.5 355 493-852 4-366 (574)
3 KOG0243 Kinesin-like protein [ 100.0 5.5E-83 1.2E-87 766.7 30.7 357 493-852 48-421 (1041)
4 KOG0245 Kinesin-like protein [ 100.0 1.7E-82 3.7E-87 747.9 25.3 355 494-853 4-379 (1221)
5 PLN03188 kinesin-12 family pro 100.0 1.4E-78 3.1E-83 733.9 38.1 361 482-863 82-467 (1320)
6 cd01370 KISc_KIP3_like Kinesin 100.0 7.9E-78 1.7E-82 677.0 34.5 320 495-823 1-338 (338)
7 cd01373 KISc_KLP2_like Kinesin 100.0 1E-76 2.2E-81 667.7 35.5 320 494-823 1-337 (337)
8 KOG0240 Kinesin (SMY1 subfamil 100.0 1.3E-77 2.7E-82 679.2 26.4 327 493-828 6-336 (607)
9 KOG0242 Kinesin-like protein [ 100.0 8.4E-77 1.8E-81 712.2 27.5 351 494-853 6-363 (675)
10 cd01368 KISc_KIF23_like Kinesi 100.0 4.8E-75 1E-79 656.0 34.9 316 494-821 1-345 (345)
11 cd01365 KISc_KIF1A_KIF1B Kines 100.0 5.5E-74 1.2E-78 650.0 37.3 328 494-828 1-354 (356)
12 cd01364 KISc_BimC_Eg5 Kinesin 100.0 4.2E-73 9.2E-78 641.8 37.2 334 494-830 2-350 (352)
13 cd01367 KISc_KIF2_like Kinesin 100.0 2.3E-73 4.9E-78 637.0 33.6 315 494-821 1-322 (322)
14 KOG0241 Kinesin-like protein [ 100.0 3.1E-74 6.7E-79 664.8 26.2 354 493-853 3-382 (1714)
15 cd01371 KISc_KIF3 Kinesin moto 100.0 1.1E-72 2.3E-77 634.2 36.4 326 494-823 1-333 (333)
16 cd01376 KISc_KID_like Kinesin 100.0 1.1E-72 2.5E-77 630.6 35.6 314 495-821 1-319 (319)
17 cd01366 KISc_C_terminal Kinesi 100.0 3.2E-72 6.9E-77 629.1 37.8 325 493-826 1-329 (329)
18 cd01372 KISc_KIF4 Kinesin moto 100.0 2E-72 4.4E-77 633.6 35.9 321 495-824 2-341 (341)
19 cd01369 KISc_KHC_KIF5 Kinesin 100.0 3.4E-72 7.3E-77 628.0 36.3 320 494-823 2-325 (325)
20 cd01374 KISc_CENP_E Kinesin mo 100.0 4.9E-72 1.1E-76 625.8 35.2 315 495-823 1-321 (321)
21 cd01375 KISc_KIF9_like Kinesin 100.0 2.5E-71 5.4E-76 623.4 35.3 320 495-821 1-334 (334)
22 cd00106 KISc Kinesin motor dom 100.0 6.4E-68 1.4E-72 593.2 37.7 322 495-821 1-328 (328)
23 smart00129 KISc Kinesin motor, 100.0 3.1E-67 6.8E-72 589.8 37.2 326 495-829 1-334 (335)
24 PF00225 Kinesin: Kinesin moto 100.0 3.7E-68 8E-73 596.8 25.9 321 501-823 1-335 (335)
25 KOG0246 Kinesin-like protein [ 100.0 1.3E-63 2.7E-68 563.1 28.5 326 494-827 208-545 (676)
26 KOG0247 Kinesin-like protein [ 100.0 5.7E-64 1.2E-68 579.5 24.4 330 491-826 28-439 (809)
27 KOG0244 Kinesin-like protein [ 100.0 7E-64 1.5E-68 593.9 8.5 342 502-854 1-349 (913)
28 COG5059 KIP1 Kinesin-like prot 100.0 3.7E-59 8E-64 554.9 29.2 309 538-853 55-368 (568)
29 cd01363 Motor_domain Myosin an 100.0 7.5E-50 1.6E-54 414.5 18.7 176 556-802 8-186 (186)
30 KOG2046 Calponin [Cytoskeleton 99.9 4.8E-25 1E-29 225.4 11.3 124 7-135 2-133 (193)
31 COG5199 SCP1 Calponin [Cytoske 99.7 2.3E-18 5E-23 168.0 7.6 110 22-136 5-121 (178)
32 cd00014 CH Calponin homology d 99.5 8.4E-15 1.8E-19 137.7 7.4 98 31-131 2-106 (107)
33 KOG2128 Ras GTPase-activating 99.5 7.4E-14 1.6E-18 173.3 8.8 112 31-149 43-163 (1401)
34 COG5261 IQG1 Protein involved 99.4 2.2E-13 4.7E-18 161.5 8.8 102 30-137 44-154 (1054)
35 PF00307 CH: Calponin homology 99.3 3E-12 6.4E-17 120.4 6.6 99 32-132 1-108 (108)
36 smart00033 CH Calponin homolog 99.3 3.7E-12 8.1E-17 118.6 5.9 93 32-127 2-103 (103)
37 KOG2996 Rho guanine nucleotide 99.1 9.8E-11 2.1E-15 134.6 7.4 99 33-131 5-119 (865)
38 COG5059 KIP1 Kinesin-like prot 99.0 1.3E-12 2.9E-17 157.0 -12.3 271 479-767 291-566 (568)
39 KOG0532 Leucine-rich repeat (L 98.9 9E-10 1.9E-14 128.2 6.3 98 32-131 574-686 (722)
40 KOG0046 Ca2+-binding actin-bun 97.8 1.2E-05 2.5E-10 93.4 4.1 109 7-115 96-219 (627)
41 PF11971 CAMSAP_CH: CAMSAP CH 97.2 0.00036 7.8E-09 64.5 4.6 65 48-112 7-81 (85)
42 PF00038 Filament: Intermediat 96.9 0.69 1.5E-05 52.2 28.2 45 332-376 100-151 (312)
43 KOG2129 Uncharacterized conser 96.9 0.092 2E-06 60.3 20.2 35 312-346 134-169 (552)
44 PHA02562 46 endonuclease subun 96.9 0.99 2.1E-05 55.0 30.9 58 307-364 213-270 (562)
45 KOG0161 Myosin class II heavy 96.6 0.92 2E-05 62.1 29.4 14 382-395 1017-1030(1930)
46 PF07888 CALCOCO1: Calcium bin 96.6 2.4 5.2E-05 51.6 29.9 22 471-492 383-404 (546)
47 TIGR02169 SMC_prok_A chromosom 96.5 1.4 3E-05 58.0 31.0 11 670-680 625-635 (1164)
48 PF07888 CALCOCO1: Calcium bin 96.5 2.1 4.5E-05 52.1 29.0 31 107-137 56-87 (546)
49 PF10498 IFT57: Intra-flagella 96.5 0.25 5.5E-06 57.3 20.6 44 91-134 72-116 (359)
50 KOG0977 Nuclear envelope prote 96.5 0.51 1.1E-05 57.1 23.5 132 259-397 97-261 (546)
51 PF09726 Macoilin: Transmembra 96.4 1.1 2.3E-05 56.4 26.6 32 269-300 422-453 (697)
52 KOG0250 DNA repair protein RAD 96.3 1.4 3.1E-05 56.6 27.2 17 211-227 196-212 (1074)
53 KOG4673 Transcription factor T 96.2 2 4.4E-05 52.5 26.1 57 290-346 478-534 (961)
54 COG1196 Smc Chromosome segrega 96.2 2.7 5.9E-05 56.1 30.6 63 754-827 1072-1145(1163)
55 PF12128 DUF3584: Protein of u 96.1 2.2 4.8E-05 57.1 29.3 37 435-471 827-863 (1201)
56 TIGR00606 rad50 rad50. This fa 96.1 1.9 4.1E-05 58.3 28.8 66 412-477 883-948 (1311)
57 TIGR02168 SMC_prok_B chromosom 96.1 3.7 8.1E-05 54.0 31.1 12 814-825 1155-1166(1179)
58 COG1196 Smc Chromosome segrega 96.1 2.1 4.6E-05 57.1 28.8 8 600-607 589-596 (1163)
59 PF05667 DUF812: Protein of un 96.1 4.1 8.9E-05 50.5 29.0 39 35-74 38-78 (594)
60 PRK11637 AmiB activator; Provi 96.0 5 0.00011 47.7 28.6 13 700-712 405-417 (428)
61 KOG0161 Myosin class II heavy 96.0 3.2 6.8E-05 57.2 29.3 73 330-403 1071-1143(1930)
62 PF09726 Macoilin: Transmembra 95.8 1.1 2.5E-05 56.2 23.2 26 443-468 606-631 (697)
63 PF12128 DUF3584: Protein of u 95.8 1 2.2E-05 60.2 24.1 127 334-463 634-768 (1201)
64 KOG0996 Structural maintenance 95.7 4.1 9E-05 52.9 27.3 43 92-134 91-138 (1293)
65 PRK11637 AmiB activator; Provi 95.7 3.9 8.4E-05 48.6 26.4 21 568-592 356-377 (428)
66 PRK02224 chromosome segregatio 95.7 6.5 0.00014 50.8 30.3 14 31-44 110-123 (880)
67 KOG0977 Nuclear envelope prote 95.7 2 4.4E-05 52.1 23.5 27 468-494 251-282 (546)
68 PF09755 DUF2046: Uncharacteri 95.5 3 6.5E-05 47.3 22.6 147 311-460 110-258 (310)
69 KOG1029 Endocytic adaptor prot 95.4 3.8 8.2E-05 50.9 24.5 11 260-270 333-343 (1118)
70 PF06395 CDC24: CDC24 Calponin 95.4 0.039 8.5E-07 51.5 6.2 72 56-127 5-88 (89)
71 TIGR00606 rad50 rad50. This fa 95.3 5.8 0.00013 53.7 28.9 25 380-404 883-907 (1311)
72 KOG0971 Microtubule-associated 95.2 13 0.00028 47.3 28.3 43 56-100 30-72 (1243)
73 PRK02224 chromosome segregatio 95.2 11 0.00024 48.7 29.9 15 195-209 128-142 (880)
74 KOG0995 Centromere-associated 94.9 12 0.00027 45.5 29.5 89 31-133 71-173 (581)
75 PHA02562 46 endonuclease subun 94.9 12 0.00026 45.7 27.7 15 196-210 130-144 (562)
76 KOG4643 Uncharacterized coiled 94.9 2.6 5.7E-05 53.7 21.6 20 307-326 198-217 (1195)
77 PF05010 TACC: Transforming ac 94.9 6.2 0.00013 42.7 21.9 115 257-399 40-157 (207)
78 KOG0996 Structural maintenance 94.9 12 0.00026 48.9 27.5 34 258-291 292-325 (1293)
79 KOG0976 Rho/Rac1-interacting s 94.9 7.9 0.00017 48.4 24.8 18 321-338 284-301 (1265)
80 COG1340 Uncharacterized archae 94.8 9.1 0.0002 43.4 26.0 25 307-331 62-86 (294)
81 PF05667 DUF812: Protein of un 94.8 3.8 8.1E-05 50.8 22.6 39 69-109 40-88 (594)
82 KOG0971 Microtubule-associated 94.6 7.1 0.00015 49.5 23.9 32 333-364 394-425 (1243)
83 PRK03918 chromosome segregatio 94.6 20 0.00044 46.3 31.5 15 978-992 856-870 (880)
84 KOG4674 Uncharacterized conser 94.5 6 0.00013 54.0 24.6 82 316-401 740-821 (1822)
85 COG1579 Zn-ribbon protein, pos 94.4 2.7 5.9E-05 46.3 18.3 94 308-407 53-146 (239)
86 PRK04863 mukB cell division pr 94.4 9.6 0.00021 52.1 26.8 50 446-495 439-488 (1486)
87 PF15035 Rootletin: Ciliary ro 94.4 4.5 9.8E-05 42.9 19.2 56 409-464 119-174 (182)
88 PF08317 Spc7: Spc7 kinetochor 94.3 9.5 0.00021 43.9 23.5 25 287-311 136-160 (325)
89 PF05483 SCP-1: Synaptonemal c 94.3 19 0.00041 44.7 26.3 72 332-403 524-605 (786)
90 KOG0612 Rho-associated, coiled 94.2 22 0.00047 46.9 27.7 17 55-71 217-236 (1317)
91 KOG0994 Extracellular matrix g 94.2 26 0.00056 45.9 28.3 17 483-499 1738-1754(1758)
92 PF12325 TMF_TATA_bd: TATA ele 94.2 1 2.2E-05 44.6 13.0 78 315-393 31-111 (120)
93 KOG1937 Uncharacterized conser 94.1 9.5 0.00021 45.1 22.3 71 332-402 290-362 (521)
94 KOG0250 DNA repair protein RAD 94.1 26 0.00057 45.7 28.0 16 669-684 600-615 (1074)
95 PF05911 DUF869: Plant protein 93.9 3.5 7.6E-05 52.4 20.2 95 311-406 593-687 (769)
96 KOG4674 Uncharacterized conser 93.8 21 0.00046 49.1 27.7 47 433-479 1027-1073(1822)
97 KOG0243 Kinesin-like protein [ 93.8 25 0.00055 45.9 27.2 29 229-263 320-351 (1041)
98 COG1579 Zn-ribbon protein, pos 93.7 10 0.00023 41.8 20.9 13 304-316 28-40 (239)
99 KOG0964 Structural maintenance 93.7 22 0.00047 45.8 25.8 18 258-275 188-205 (1200)
100 PF00038 Filament: Intermediat 93.6 15 0.00034 41.4 29.6 31 270-300 73-103 (312)
101 PRK04778 septation ring format 93.5 13 0.00029 45.9 24.0 38 329-366 304-341 (569)
102 KOG1029 Endocytic adaptor prot 93.5 28 0.0006 43.9 25.5 15 694-708 826-840 (1118)
103 PRK03918 chromosome segregatio 93.4 18 0.0004 46.6 26.2 12 33-44 111-122 (880)
104 PF10174 Cast: RIM-binding pro 93.4 13 0.00029 47.5 23.9 61 432-499 665-725 (775)
105 PF15397 DUF4618: Domain of un 93.1 17 0.00038 40.5 25.0 75 315-393 64-146 (258)
106 smart00787 Spc7 Spc7 kinetocho 93.1 15 0.00033 42.1 22.1 27 286-312 130-156 (312)
107 PF14662 CCDC155: Coiled-coil 93.1 13 0.00028 39.6 19.5 94 263-367 34-127 (193)
108 KOG4807 F-actin binding protei 93.1 18 0.00038 42.2 21.8 104 347-452 419-540 (593)
109 PRK09039 hypothetical protein; 93.0 9.1 0.0002 44.4 20.3 13 232-244 36-48 (343)
110 KOG0933 Structural maintenance 92.9 35 0.00076 44.2 26.0 20 56-75 480-499 (1174)
111 COG0556 UvrB Helicase subunit 92.9 0.14 3E-06 61.2 5.5 94 540-638 4-101 (663)
112 PRK04863 mukB cell division pr 92.9 52 0.0011 45.4 30.2 42 415-456 440-481 (1486)
113 PF15619 Lebercilin: Ciliary p 92.9 16 0.00034 39.3 23.9 80 381-463 85-164 (194)
114 PF05622 HOOK: HOOK protein; 92.9 0.083 1.8E-06 66.5 3.9 42 31-79 8-49 (713)
115 PF10481 CENP-F_N: Cenp-F N-te 92.8 3.8 8.2E-05 45.5 15.7 26 468-493 164-189 (307)
116 PF10473 CENP-F_leu_zip: Leuci 92.7 11 0.00023 38.5 17.8 66 337-410 40-105 (140)
117 KOG0963 Transcription factor/C 92.7 32 0.0007 42.5 26.2 161 319-489 187-349 (629)
118 PRK01156 chromosome segregatio 92.6 43 0.00093 43.6 30.0 26 479-505 432-457 (895)
119 KOG0995 Centromere-associated 92.5 32 0.0007 42.1 29.1 10 119-128 129-138 (581)
120 PF00308 Bac_DnaA: Bacterial d 92.5 0.046 1E-06 59.0 0.9 50 540-591 4-53 (219)
121 PF06818 Fez1: Fez1; InterPro 92.5 9.7 0.00021 41.0 18.0 97 246-361 7-106 (202)
122 PF15070 GOLGA2L5: Putative go 92.2 40 0.00086 42.3 28.7 17 350-366 88-104 (617)
123 PRK04778 septation ring format 91.9 14 0.00031 45.6 21.3 19 26-44 25-43 (569)
124 PF07926 TPR_MLP1_2: TPR/MLP1/ 91.6 16 0.00034 36.6 18.1 55 435-492 77-131 (132)
125 COG4372 Uncharacterized protei 91.5 33 0.00072 40.1 27.7 21 570-593 391-411 (499)
126 PF15070 GOLGA2L5: Putative go 91.5 47 0.001 41.7 28.6 20 382-401 164-183 (617)
127 PF13851 GAS: Growth-arrest sp 91.4 22 0.00048 38.3 19.5 13 308-320 56-68 (201)
128 KOG0046 Ca2+-binding actin-bun 91.0 0.71 1.5E-05 55.0 8.2 117 9-131 362-494 (627)
129 KOG4643 Uncharacterized coiled 90.9 63 0.0014 42.1 28.5 13 481-493 545-557 (1195)
130 PF15397 DUF4618: Domain of un 90.9 31 0.00067 38.6 26.3 49 346-394 117-165 (258)
131 PF12718 Tropomyosin_1: Tropom 90.9 15 0.00033 37.4 16.8 22 382-403 77-98 (143)
132 PF00261 Tropomyosin: Tropomyo 90.8 29 0.00062 38.1 24.2 27 382-408 138-164 (237)
133 KOG0933 Structural maintenance 90.6 66 0.0014 41.9 28.0 13 754-766 1088-1100(1174)
134 KOG1899 LAR transmembrane tyro 90.5 16 0.00034 44.9 18.6 57 262-318 108-164 (861)
135 COG5185 HEC1 Protein involved 90.4 46 0.001 39.8 25.8 27 257-283 256-282 (622)
136 KOG0980 Actin-binding protein 90.4 65 0.0014 41.4 25.1 22 306-327 385-406 (980)
137 PRK06893 DNA replication initi 90.1 0.17 3.8E-06 54.8 2.3 48 539-591 11-58 (229)
138 PF05701 WEMBL: Weak chloropla 90.1 56 0.0012 40.2 29.0 21 344-364 174-194 (522)
139 KOG4593 Mitotic checkpoint pro 90.0 62 0.0013 40.6 29.6 62 426-487 246-313 (716)
140 COG1340 Uncharacterized archae 89.7 42 0.0009 38.2 21.6 23 455-477 192-214 (294)
141 KOG1850 Myosin-like coiled-coi 89.7 43 0.00092 38.3 22.8 115 352-499 218-332 (391)
142 KOG0976 Rho/Rac1-interacting s 89.7 69 0.0015 40.7 28.3 14 256-269 87-100 (1265)
143 PF10174 Cast: RIM-binding pro 89.7 73 0.0016 41.0 25.6 25 426-450 467-491 (775)
144 PRK06620 hypothetical protein; 89.7 0.13 2.8E-06 55.4 0.9 50 539-591 11-63 (214)
145 PRK14086 dnaA chromosomal repl 89.6 0.18 3.8E-06 62.1 2.0 51 539-591 283-333 (617)
146 PF14988 DUF4515: Domain of un 89.4 35 0.00076 37.0 21.2 17 380-396 80-96 (206)
147 TIGR01843 type_I_hlyD type I s 89.4 13 0.00029 43.2 17.3 17 431-447 253-269 (423)
148 PRK10361 DNA recombination pro 89.0 60 0.0013 39.4 22.2 41 433-473 142-182 (475)
149 PRK01156 chromosome segregatio 88.9 87 0.0019 40.8 30.3 22 339-360 222-243 (895)
150 PRK12377 putative replication 88.9 0.25 5.4E-06 54.6 2.4 49 542-591 72-120 (248)
151 COG2805 PilT Tfp pilus assembl 88.8 0.21 4.6E-06 56.3 1.7 30 561-590 114-143 (353)
152 KOG2129 Uncharacterized conser 88.7 21 0.00047 41.8 17.4 37 348-384 259-295 (552)
153 PF06785 UPF0242: Uncharacteri 87.9 12 0.00026 42.7 14.5 64 259-324 87-158 (401)
154 PRK08084 DNA replication initi 87.9 0.28 6.1E-06 53.4 2.0 47 540-591 18-64 (235)
155 PRK07952 DNA replication prote 87.8 0.33 7.2E-06 53.5 2.5 50 541-591 69-118 (244)
156 PRK00149 dnaA chromosomal repl 87.8 0.94 2E-05 54.1 6.4 52 538-591 116-167 (450)
157 cd07651 F-BAR_PombeCdc15_like 87.6 48 0.001 36.2 19.3 23 352-374 117-139 (236)
158 COG2804 PulE Type II secretory 87.4 0.27 5.8E-06 58.9 1.5 32 560-591 246-277 (500)
159 PF10168 Nup88: Nuclear pore c 87.4 19 0.00042 45.8 17.8 7 107-113 342-348 (717)
160 PF09744 Jnk-SapK_ap_N: JNK_SA 87.1 21 0.00045 37.1 14.8 13 254-266 23-35 (158)
161 PRK08116 hypothetical protein; 87.1 0.35 7.6E-06 53.9 2.2 51 540-591 81-133 (268)
162 PRK06835 DNA replication prote 87.0 0.27 5.7E-06 56.5 1.2 38 553-591 165-202 (329)
163 KOG0980 Actin-binding protein 86.9 1.1E+02 0.0023 39.6 28.7 11 812-822 881-891 (980)
164 PRK14088 dnaA chromosomal repl 86.9 0.28 6.2E-06 58.4 1.4 50 539-591 100-149 (440)
165 PF04949 Transcrip_act: Transc 86.8 23 0.00049 36.3 14.3 70 228-320 28-97 (159)
166 KOG3000 Microtubule-binding pr 86.8 2.3 5E-05 48.1 8.3 102 30-139 15-123 (295)
167 KOG0979 Structural maintenance 86.7 1.2E+02 0.0025 39.8 25.0 9 583-591 477-485 (1072)
168 PRK05642 DNA replication initi 86.7 0.38 8.3E-06 52.4 2.1 49 540-591 15-64 (234)
169 PLN03188 kinesin-12 family pro 86.5 67 0.0015 43.0 21.7 75 294-368 878-959 (1320)
170 PF12325 TMF_TATA_bd: TATA ele 86.4 19 0.00042 35.8 13.5 26 435-460 93-118 (120)
171 TIGR01005 eps_transp_fam exopo 86.4 83 0.0018 40.3 22.9 28 271-298 200-227 (754)
172 COG4942 Membrane-bound metallo 86.3 82 0.0018 37.7 22.8 50 308-357 60-109 (420)
173 KOG0999 Microtubule-associated 86.2 92 0.002 38.2 21.5 16 481-496 241-256 (772)
174 PF09730 BicD: Microtubule-ass 86.1 65 0.0014 41.1 21.0 15 286-300 27-41 (717)
175 TIGR00362 DnaA chromosomal rep 86.1 0.36 7.8E-06 56.6 1.6 52 538-591 104-155 (405)
176 PF15254 CCDC14: Coiled-coil d 86.0 23 0.0005 44.6 16.6 60 417-476 455-514 (861)
177 PF09730 BicD: Microtubule-ass 86.0 89 0.0019 39.9 22.1 56 308-363 266-321 (717)
178 COG3883 Uncharacterized protei 85.7 67 0.0015 36.2 20.1 66 309-374 47-112 (265)
179 COG5185 HEC1 Protein involved 85.7 90 0.002 37.6 25.1 20 55-74 103-122 (622)
180 TIGR03007 pepcterm_ChnLen poly 85.6 93 0.002 37.6 23.8 16 232-247 136-151 (498)
181 KOG0946 ER-Golgi vesicle-tethe 85.1 1.3E+02 0.0027 38.7 22.8 18 346-363 696-713 (970)
182 PF04849 HAP1_N: HAP1 N-termin 85.0 76 0.0017 36.4 19.0 54 306-362 173-226 (306)
183 TIGR01843 type_I_hlyD type I s 84.9 38 0.00082 39.5 17.6 7 569-575 326-332 (423)
184 KOG4809 Rab6 GTPase-interactin 84.9 1.1E+02 0.0023 37.7 27.8 31 256-286 245-275 (654)
185 PRK09087 hypothetical protein; 84.7 0.56 1.2E-05 51.0 2.2 48 539-591 16-63 (226)
186 COG1484 DnaC DNA replication p 84.6 0.61 1.3E-05 51.6 2.5 49 541-591 76-124 (254)
187 PF13870 DUF4201: Domain of un 84.4 57 0.0012 34.1 20.4 90 272-367 6-95 (177)
188 PF09731 Mitofilin: Mitochondr 84.0 1.2E+02 0.0026 37.6 22.8 17 598-614 491-507 (582)
189 PF08317 Spc7: Spc7 kinetochor 83.8 90 0.0019 36.0 28.5 36 226-271 50-85 (325)
190 PRK09039 hypothetical protein; 83.6 95 0.0021 36.2 21.5 18 254-271 39-56 (343)
191 PF06160 EzrA: Septation ring 83.5 1.1E+02 0.0024 37.9 21.5 38 334-371 305-342 (560)
192 cd07647 F-BAR_PSTPIP The F-BAR 83.5 56 0.0012 35.9 17.1 26 349-374 113-138 (239)
193 PRK12704 phosphodiesterase; Pr 83.4 1.2E+02 0.0027 37.3 22.3 11 552-562 283-293 (520)
194 TIGR03420 DnaA_homol_Hda DnaA 83.2 0.75 1.6E-05 48.9 2.4 47 540-591 11-57 (226)
195 TIGR01242 26Sp45 26S proteasom 83.1 3.2 6.9E-05 48.1 7.7 19 572-590 156-174 (364)
196 KOG0804 Cytoplasmic Zn-finger 83.1 52 0.0011 39.3 17.0 10 91-100 87-96 (493)
197 COG4372 Uncharacterized protei 82.8 1.1E+02 0.0023 36.1 22.6 30 463-492 259-288 (499)
198 PRK08903 DnaA regulatory inact 82.7 0.8 1.7E-05 49.1 2.4 49 539-591 13-61 (227)
199 KOG0946 ER-Golgi vesicle-tethe 82.6 1.3E+02 0.0027 38.7 20.7 49 346-395 668-716 (970)
200 PF12718 Tropomyosin_1: Tropom 82.6 61 0.0013 33.1 18.2 8 387-394 89-96 (143)
201 TIGR03185 DNA_S_dndD DNA sulfu 82.3 1.1E+02 0.0023 38.7 21.0 19 256-274 318-336 (650)
202 cd07671 F-BAR_PSTPIP1 The F-BA 81.9 64 0.0014 35.7 16.8 38 330-374 101-138 (242)
203 PF10168 Nup88: Nuclear pore c 81.8 54 0.0012 41.9 18.1 25 451-475 634-658 (717)
204 TIGR02928 orc1/cdc6 family rep 81.8 0.9 2E-05 52.1 2.5 38 553-590 20-58 (365)
205 KOG0240 Kinesin (SMY1 subfamil 81.6 1.4E+02 0.0031 36.8 22.4 39 250-288 330-368 (607)
206 PRK14087 dnaA chromosomal repl 81.4 0.68 1.5E-05 55.4 1.4 50 540-591 111-160 (450)
207 PRK03992 proteasome-activating 81.3 20 0.00044 42.2 13.4 18 572-589 165-182 (389)
208 COG5069 SAC6 Ca2+-binding acti 81.2 1.6 3.4E-05 51.7 4.1 80 31-112 126-215 (612)
209 PRK10865 protein disaggregatio 81.0 47 0.001 43.3 17.7 44 543-590 567-616 (857)
210 COG0593 DnaA ATPase involved i 80.8 0.74 1.6E-05 54.3 1.3 51 539-591 82-132 (408)
211 COG4477 EzrA Negative regulato 80.7 1.4E+02 0.0031 36.6 19.8 52 345-401 319-370 (570)
212 PTZ00454 26S protease regulato 80.7 5.2 0.00011 47.3 8.3 51 540-590 141-197 (398)
213 PRK06526 transposase; Provisio 80.7 0.63 1.4E-05 51.6 0.7 40 547-591 77-117 (254)
214 PF15619 Lebercilin: Ciliary p 80.6 88 0.0019 33.7 21.3 26 381-406 121-146 (194)
215 PF10212 TTKRSYEDQ: Predicted 80.5 1.3E+02 0.0029 36.8 19.6 46 432-477 463-508 (518)
216 PF09787 Golgin_A5: Golgin sub 80.4 1.5E+02 0.0033 36.3 26.7 46 350-395 275-323 (511)
217 PF13851 GAS: Growth-arrest sp 79.6 95 0.0021 33.5 25.6 31 382-412 97-127 (201)
218 PRK08181 transposase; Validate 79.5 1.1 2.3E-05 50.3 2.0 21 569-591 105-125 (269)
219 PF04851 ResIII: Type III rest 79.4 0.82 1.8E-05 46.1 1.0 29 563-591 15-44 (184)
220 KOG0804 Cytoplasmic Zn-finger 79.4 32 0.00069 41.0 13.7 25 372-396 422-446 (493)
221 PRK08727 hypothetical protein; 79.4 1.1 2.4E-05 48.8 2.0 45 540-591 15-60 (233)
222 PRK08939 primosomal protein Dn 79.2 0.84 1.8E-05 52.0 1.1 51 541-591 124-175 (306)
223 KOG4673 Transcription factor T 79.0 1.9E+02 0.0041 36.6 26.7 29 332-360 413-441 (961)
224 COG3883 Uncharacterized protei 78.5 1.2E+02 0.0027 34.1 23.1 72 314-389 38-109 (265)
225 COG2433 Uncharacterized conser 78.5 24 0.00051 43.5 12.7 24 55-78 57-80 (652)
226 KOG1103 Predicted coiled-coil 78.4 1.4E+02 0.003 34.7 19.0 27 353-379 171-197 (561)
227 PLN02939 transferase, transfer 77.9 1.1E+02 0.0025 40.2 19.2 14 332-345 198-211 (977)
228 PF08581 Tup_N: Tup N-terminal 77.9 40 0.00087 31.2 11.3 46 420-465 28-73 (79)
229 COG1474 CDC6 Cdc6-related prot 77.9 1.4 2.9E-05 51.6 2.3 30 560-589 29-59 (366)
230 TIGR02680 conserved hypothetic 77.5 3E+02 0.0065 38.1 27.1 10 773-782 839-848 (1353)
231 TIGR02903 spore_lon_C ATP-depe 77.4 11 0.00024 47.1 10.1 27 563-589 166-192 (615)
232 PF04111 APG6: Autophagy prote 77.2 26 0.00057 40.2 12.3 37 326-362 55-91 (314)
233 PRK00411 cdc6 cell division co 77.2 1.7 3.7E-05 50.4 2.8 37 554-590 36-73 (394)
234 cd00046 DEXDc DEAD-like helica 77.1 0.86 1.9E-05 42.8 0.3 17 575-591 3-19 (144)
235 COG2433 Uncharacterized conser 76.9 26 0.00056 43.2 12.4 26 338-363 439-464 (652)
236 PRK10884 SH3 domain-containing 76.1 25 0.00055 38.1 11.1 21 383-403 137-157 (206)
237 KOG3631 Alpha-parvin and relat 76.0 5 0.00011 44.5 5.8 97 31-132 91-196 (365)
238 PF04156 IncA: IncA protein; 75.8 1E+02 0.0022 32.4 15.5 18 347-364 100-117 (191)
239 cd00009 AAA The AAA+ (ATPases 75.8 1.6 3.4E-05 41.5 1.7 20 571-590 18-37 (151)
240 PF10212 TTKRSYEDQ: Predicted 75.3 40 0.00086 41.1 13.4 27 347-373 467-493 (518)
241 PF07798 DUF1640: Protein of u 74.8 1.2E+02 0.0025 32.0 18.7 15 231-245 23-37 (177)
242 PLN02939 transferase, transfer 74.5 2.3E+02 0.005 37.5 20.6 18 288-305 165-182 (977)
243 PF13401 AAA_22: AAA domain; P 74.5 0.92 2E-05 43.7 -0.2 19 572-590 4-22 (131)
244 KOG0249 LAR-interacting protei 74.3 1.4E+02 0.0031 37.7 17.6 71 326-402 117-187 (916)
245 PF09789 DUF2353: Uncharacteri 74.3 1.6E+02 0.0034 34.2 17.3 16 477-492 193-208 (319)
246 TIGR02538 type_IV_pilB type IV 74.3 1.4 3E-05 54.3 1.2 30 562-591 306-335 (564)
247 PRK06921 hypothetical protein; 74.3 1.9 4.2E-05 48.1 2.2 38 554-591 96-136 (266)
248 PRK10436 hypothetical protein; 73.9 1.5 3.3E-05 52.7 1.4 30 562-591 208-237 (462)
249 PF05701 WEMBL: Weak chloropla 73.9 2.3E+02 0.005 35.0 29.0 31 421-451 278-308 (522)
250 COG4942 Membrane-bound metallo 73.8 2.1E+02 0.0045 34.4 26.4 26 423-448 216-241 (420)
251 TIGR02533 type_II_gspE general 73.8 1.6 3.5E-05 52.8 1.5 30 562-591 232-261 (486)
252 PF15290 Syntaphilin: Golgi-lo 73.2 85 0.0019 35.5 14.2 51 346-405 86-137 (305)
253 TIGR03319 YmdA_YtgF conserved 73.0 2.4E+02 0.0052 34.8 23.1 7 554-560 279-285 (514)
254 cd07672 F-BAR_PSTPIP2 The F-BA 72.9 1.6E+02 0.0034 32.7 18.8 35 333-374 105-139 (240)
255 PF00270 DEAD: DEAD/DEAH box h 72.7 1.8 4E-05 43.2 1.5 28 562-591 6-33 (169)
256 PF06548 Kinesin-related: Kine 72.6 2.2E+02 0.0049 34.3 20.3 27 297-323 116-142 (488)
257 PF05483 SCP-1: Synaptonemal c 72.6 2.7E+02 0.0059 35.3 27.0 75 226-300 150-240 (786)
258 PF06548 Kinesin-related: Kine 72.2 2.3E+02 0.005 34.2 20.4 22 473-494 448-469 (488)
259 PF01935 DUF87: Domain of unkn 72.2 1.3 2.9E-05 47.4 0.3 17 574-590 25-41 (229)
260 PRK12422 chromosomal replicati 72.1 2.1 4.6E-05 51.2 2.0 52 538-591 105-160 (445)
261 PF15294 Leu_zip: Leucine zipp 72.1 74 0.0016 36.1 13.7 40 315-354 133-172 (278)
262 PF12846 AAA_10: AAA-like doma 72.1 1.3 2.8E-05 48.5 0.2 19 572-590 1-19 (304)
263 PF13245 AAA_19: Part of AAA d 72.1 1.7 3.7E-05 39.4 0.9 27 564-591 3-29 (76)
264 TIGR01420 pilT_fam pilus retra 72.0 1.8 3.9E-05 49.9 1.4 29 563-591 113-141 (343)
265 smart00382 AAA ATPases associa 72.0 1.3 2.9E-05 41.4 0.2 19 573-591 3-21 (148)
266 PTZ00112 origin recognition co 71.9 1.4 3E-05 56.3 0.4 32 559-590 766-799 (1164)
267 PF07058 Myosin_HC-like: Myosi 71.6 69 0.0015 36.6 13.2 46 275-320 3-48 (351)
268 KOG1854 Mitochondrial inner me 71.3 2.8E+02 0.0061 34.9 22.4 60 447-506 432-497 (657)
269 cd01131 PilT Pilus retraction 71.2 1.4 3.1E-05 46.6 0.3 18 573-590 2-19 (198)
270 PF06160 EzrA: Septation ring 71.1 2.7E+02 0.0059 34.6 28.3 21 434-454 316-336 (560)
271 PRK12704 phosphodiesterase; Pr 71.1 2.6E+02 0.0057 34.5 19.4 13 482-494 191-203 (520)
272 PF01576 Myosin_tail_1: Myosin 70.8 1.4 3E-05 57.0 0.0 59 347-405 290-348 (859)
273 TIGR02680 conserved hypothetic 70.7 4.2E+02 0.0092 36.7 26.9 11 262-272 743-753 (1353)
274 PRK12402 replication factor C 70.6 1.8 4E-05 48.7 1.0 44 541-591 12-55 (337)
275 KOG0963 Transcription factor/C 70.6 2.9E+02 0.0062 34.7 27.8 71 427-497 281-354 (629)
276 PF15066 CAGE1: Cancer-associa 70.5 1.4E+02 0.003 36.1 15.8 156 243-402 342-527 (527)
277 PF10473 CENP-F_leu_zip: Leuci 70.0 1.4E+02 0.0029 30.7 18.6 19 386-404 67-85 (140)
278 TIGR02525 plasmid_TraJ plasmid 70.0 2.1 4.7E-05 50.1 1.4 28 563-591 141-168 (372)
279 PF06294 DUF1042: Domain of Un 69.7 4.2 9.2E-05 42.1 3.3 87 35-128 1-99 (158)
280 KOG0964 Structural maintenance 69.6 3.7E+02 0.008 35.5 26.6 10 754-763 1103-1112(1200)
281 PF00437 T2SE: Type II/IV secr 69.0 2 4.4E-05 47.3 0.9 29 561-590 117-145 (270)
282 TIGR02524 dot_icm_DotB Dot/Icm 68.8 2.4 5.2E-05 49.4 1.4 21 571-591 133-153 (358)
283 TIGR03017 EpsF chain length de 68.5 2.5E+02 0.0055 33.3 26.4 29 270-298 176-204 (444)
284 PF05557 MAD: Mitotic checkpoi 68.3 84 0.0018 40.2 15.0 22 384-405 565-586 (722)
285 PF15290 Syntaphilin: Golgi-lo 68.3 76 0.0016 35.9 12.5 21 432-452 118-138 (305)
286 PF05010 TACC: Transforming ac 68.2 1.9E+02 0.004 31.6 24.8 39 330-368 64-102 (207)
287 PF10267 Tmemb_cc2: Predicted 68.0 1.6E+02 0.0036 35.0 16.1 28 420-447 265-292 (395)
288 KOG0962 DNA repair protein RAD 67.8 4.5E+02 0.0098 35.9 27.8 15 601-615 1127-1141(1294)
289 PF06008 Laminin_I: Laminin Do 67.8 2.1E+02 0.0045 31.9 21.9 18 252-269 19-36 (264)
290 cd01129 PulE-GspE PulE/GspE Th 67.7 2.7 5.9E-05 46.8 1.5 30 562-591 70-99 (264)
291 PF07926 TPR_MLP1_2: TPR/MLP1/ 67.6 1.4E+02 0.003 29.9 17.5 15 388-402 62-76 (132)
292 PF12252 SidE: Dot/Icm substra 67.3 4.2E+02 0.0091 35.3 20.8 38 325-362 1135-1173(1439)
293 TIGR03015 pepcterm_ATPase puta 66.9 3.6 7.9E-05 44.9 2.3 23 568-590 39-61 (269)
294 PF09728 Taxilin: Myosin-like 66.6 2.5E+02 0.0053 32.4 23.7 32 384-415 236-267 (309)
295 TIGR03319 YmdA_YtgF conserved 66.3 3.3E+02 0.0071 33.7 19.4 13 482-494 185-197 (514)
296 PF13604 AAA_30: AAA domain; P 66.0 2.9 6.2E-05 44.4 1.2 29 562-590 8-36 (196)
297 PF15294 Leu_zip: Leucine zipp 65.9 1.8E+02 0.004 33.0 15.2 17 435-451 219-235 (278)
298 TIGR01005 eps_transp_fam exopo 65.8 3.8E+02 0.0083 34.3 21.6 15 252-266 166-180 (754)
299 PF05911 DUF869: Plant protein 65.7 4.1E+02 0.0088 34.6 22.7 49 326-374 125-173 (769)
300 PF14988 DUF4515: Domain of un 65.6 2.1E+02 0.0045 31.1 23.5 86 289-392 43-128 (206)
301 PF04012 PspA_IM30: PspA/IM30 65.4 2E+02 0.0043 30.9 19.1 34 232-270 6-39 (221)
302 COG1842 PspA Phage shock prote 65.1 2.2E+02 0.0048 31.4 18.8 170 226-406 1-180 (225)
303 KOG0018 Structural maintenance 64.9 4.6E+02 0.01 35.0 24.5 242 240-485 232-491 (1141)
304 PF00261 Tropomyosin: Tropomyo 64.8 2.2E+02 0.0048 31.2 24.6 10 483-492 225-234 (237)
305 PF00448 SRP54: SRP54-type pro 64.6 2.2 4.7E-05 45.5 0.0 18 574-591 3-20 (196)
306 PF04849 HAP1_N: HAP1 N-termin 64.6 2.7E+02 0.0059 32.1 17.7 25 381-405 163-187 (306)
307 PF06818 Fez1: Fez1; InterPro 64.5 2.2E+02 0.0047 31.0 17.2 19 345-363 27-45 (202)
308 KOG0978 E3 ubiquitin ligase in 64.4 4E+02 0.0087 34.1 31.1 30 422-451 550-579 (698)
309 PF13207 AAA_17: AAA domain; P 64.2 2.5 5.3E-05 40.3 0.3 16 574-589 1-16 (121)
310 PF04111 APG6: Autophagy prote 64.0 69 0.0015 36.9 11.9 53 307-359 43-95 (314)
311 PF15233 SYCE1: Synaptonemal c 64.0 1.6E+02 0.0035 29.8 12.6 20 340-359 39-58 (134)
312 PF01637 Arch_ATPase: Archaeal 63.9 2.5 5.3E-05 44.3 0.3 30 561-590 9-38 (234)
313 PF12004 DUF3498: Domain of un 63.8 2.3 4.9E-05 51.4 0.0 59 342-404 369-427 (495)
314 KOG1853 LIS1-interacting prote 63.8 2.5E+02 0.0054 31.5 19.2 66 338-407 55-120 (333)
315 KOG0982 Centrosomal protein Nu 63.8 3.2E+02 0.007 32.8 20.8 24 380-403 299-322 (502)
316 KOG1760 Molecular chaperone Pr 63.7 87 0.0019 31.4 10.6 70 336-405 24-115 (131)
317 PF13479 AAA_24: AAA domain 63.7 3 6.5E-05 44.7 0.9 20 572-591 3-22 (213)
318 PF10186 Atg14: UV radiation r 63.6 2.4E+02 0.0052 31.2 18.8 10 482-491 146-155 (302)
319 PRK13894 conjugal transfer ATP 63.5 3.7 7.9E-05 47.2 1.6 29 561-590 138-166 (319)
320 PF05673 DUF815: Protein of un 63.0 2.9 6.2E-05 46.3 0.6 130 541-706 24-155 (249)
321 TIGR02782 TrbB_P P-type conjug 62.8 3.6 7.8E-05 46.7 1.4 29 561-590 122-150 (299)
322 TIGR00631 uvrb excinuclease AB 62.7 9.4 0.0002 48.1 5.0 92 541-637 2-97 (655)
323 KOG1937 Uncharacterized conser 62.6 3.5E+02 0.0075 32.8 21.3 15 96-110 71-88 (521)
324 PF13191 AAA_16: AAA ATPase do 62.6 2.1 4.5E-05 43.5 -0.6 22 568-589 20-41 (185)
325 PF01695 IstB_IS21: IstB-like 62.2 4.1 8.8E-05 42.7 1.5 19 573-591 48-66 (178)
326 PRK00106 hypothetical protein; 62.1 4E+02 0.0086 33.2 23.1 6 554-559 300-305 (535)
327 PF09755 DUF2046: Uncharacteri 61.6 3E+02 0.0066 31.8 25.8 25 319-343 60-85 (310)
328 KOG4403 Cell surface glycoprot 61.5 3.5E+02 0.0077 32.5 18.3 18 231-248 222-239 (575)
329 COG5008 PilU Tfp pilus assembl 60.9 5.4 0.00012 44.7 2.2 30 561-590 116-145 (375)
330 PLN03229 acetyl-coenzyme A car 60.9 4.7E+02 0.01 33.7 25.2 71 219-289 421-494 (762)
331 TIGR01000 bacteriocin_acc bact 60.4 3.5E+02 0.0076 32.5 17.6 17 563-579 368-384 (457)
332 TIGR03346 chaperone_ClpB ATP-d 60.3 2.4E+02 0.0052 36.9 17.2 38 553-590 570-613 (852)
333 PF09789 DUF2353: Uncharacteri 59.8 3.3E+02 0.0072 31.6 20.3 68 301-368 73-145 (319)
334 smart00806 AIP3 Actin interact 59.5 3.2E+02 0.0069 32.9 16.2 19 350-368 156-174 (426)
335 PF00004 AAA: ATPase family as 59.4 3.3 7.2E-05 39.5 0.2 16 575-590 1-16 (132)
336 KOG0979 Structural maintenance 59.4 5.6E+02 0.012 34.1 26.2 6 74-79 17-22 (1072)
337 PF10267 Tmemb_cc2: Predicted 59.3 1.7E+02 0.0036 35.0 14.1 22 384-405 297-318 (395)
338 KOG0727 26S proteasome regulat 59.0 63 0.0014 36.3 9.8 81 541-621 152-251 (408)
339 PF07798 DUF1640: Protein of u 58.9 2.4E+02 0.0052 29.6 17.4 16 433-448 140-155 (177)
340 COG1201 Lhr Lhr-like helicases 58.7 7.7 0.00017 49.7 3.3 48 780-833 335-388 (814)
341 PRK13833 conjugal transfer pro 58.6 4.5 9.9E-05 46.5 1.2 28 562-590 135-162 (323)
342 smart00487 DEXDc DEAD-like hel 58.6 5.7 0.00012 39.7 1.8 28 563-591 16-43 (201)
343 PF02562 PhoH: PhoH-like prote 58.2 6.6 0.00014 42.4 2.3 27 563-591 12-38 (205)
344 KOG4460 Nuclear pore complex, 57.3 3.9E+02 0.0085 33.1 16.4 29 449-477 655-683 (741)
345 PRK11281 hypothetical protein; 57.3 6.5E+02 0.014 34.2 22.2 191 288-484 38-255 (1113)
346 PRK12723 flagellar biosynthesi 57.2 7.2 0.00016 46.0 2.6 20 572-591 174-193 (388)
347 COG4962 CpaF Flp pilus assembl 57.2 5.2 0.00011 46.3 1.4 28 561-589 163-190 (355)
348 PF15272 BBP1_C: Spindle pole 57.0 2.9E+02 0.0062 30.0 15.0 120 261-394 9-148 (196)
349 PRK09183 transposase/IS protei 56.9 5.3 0.00011 44.4 1.3 21 569-591 101-121 (259)
350 TIGR03545 conserved hypothetic 56.8 77 0.0017 39.3 11.3 27 777-803 472-498 (555)
351 PF10481 CENP-F_N: Cenp-F N-te 56.5 1.5E+02 0.0032 33.6 12.1 16 309-324 20-35 (307)
352 cd01130 VirB11-like_ATPase Typ 55.9 5.7 0.00012 41.5 1.3 29 561-590 15-43 (186)
353 PF13086 AAA_11: AAA domain; P 55.8 5.2 0.00011 41.8 1.0 28 563-591 9-36 (236)
354 TIGR00635 ruvB Holliday juncti 55.0 6.6 0.00014 44.0 1.7 40 551-590 7-48 (305)
355 PTZ00424 helicase 45; Provisio 54.4 6.1 0.00013 45.9 1.4 27 562-590 57-83 (401)
356 PF00063 Myosin_head: Myosin h 54.3 6.4 0.00014 49.7 1.6 36 554-589 66-102 (689)
357 KOG1103 Predicted coiled-coil 54.2 4.1E+02 0.009 31.0 17.6 23 381-403 241-263 (561)
358 cd07658 F-BAR_NOSTRIN The F-BA 54.1 3.4E+02 0.0074 30.0 18.1 26 253-279 58-83 (239)
359 KOG0978 E3 ubiquitin ligase in 53.8 5.9E+02 0.013 32.7 24.4 31 333-363 480-510 (698)
360 PRK00409 recombination and DNA 53.6 2.5E+02 0.0054 36.5 15.5 20 117-136 271-290 (782)
361 KOG4603 TBP-1 interacting prot 53.6 2.5E+02 0.0053 29.8 12.4 21 471-491 160-180 (201)
362 PF01580 FtsK_SpoIIIE: FtsK/Sp 53.4 4.2 9E-05 42.9 -0.2 18 574-591 40-57 (205)
363 PF03904 DUF334: Domain of unk 53.3 2.3E+02 0.0049 31.3 12.7 97 306-404 42-150 (230)
364 cd00268 DEADc DEAD-box helicas 53.2 7.9 0.00017 40.3 1.9 25 563-589 29-53 (203)
365 PF00580 UvrD-helicase: UvrD/R 53.0 5.2 0.00011 44.1 0.5 21 571-591 12-32 (315)
366 KOG0972 Huntingtin interacting 53.0 2.5E+02 0.0055 32.0 13.2 47 283-329 217-263 (384)
367 PRK13342 recombination factor 52.9 7.5 0.00016 46.0 1.8 39 552-590 16-54 (413)
368 PF05557 MAD: Mitotic checkpoi 52.8 4.6 9.9E-05 51.3 0.0 40 839-878 603-643 (722)
369 KOG0962 DNA repair protein RAD 52.7 7.9E+02 0.017 33.8 26.4 18 784-803 1200-1217(1294)
370 TIGR03499 FlhF flagellar biosy 52.3 5.2 0.00011 45.0 0.3 18 574-591 196-213 (282)
371 KOG2856 Adaptor protein PACSIN 52.0 2.6E+02 0.0056 33.0 13.4 30 433-462 179-208 (472)
372 PF00910 RNA_helicase: RNA hel 52.0 4.2 9E-05 38.8 -0.4 16 575-590 1-16 (107)
373 PRK09841 cryptic autophosphory 51.9 3.2E+02 0.007 35.0 16.1 18 574-591 533-551 (726)
374 PF06309 Torsin: Torsin; Inte 51.9 5.7 0.00012 39.8 0.5 15 575-589 56-70 (127)
375 PRK11776 ATP-dependent RNA hel 51.9 7.9 0.00017 46.2 1.8 26 562-589 33-58 (460)
376 KOG0989 Replication factor C, 51.7 10 0.00022 43.4 2.4 43 548-590 31-75 (346)
377 KOG1899 LAR transmembrane tyro 51.6 5.4E+02 0.012 32.4 16.5 18 600-617 485-502 (861)
378 PF07106 TBPIP: Tat binding pr 51.5 2E+02 0.0044 29.8 11.9 21 467-487 149-169 (169)
379 PF15450 DUF4631: Domain of un 51.4 5.6E+02 0.012 31.7 25.0 46 326-371 342-387 (531)
380 PF09731 Mitofilin: Mitochondr 51.4 5.7E+02 0.012 31.7 23.2 31 465-495 407-442 (582)
381 PRK13851 type IV secretion sys 51.4 5.3 0.00011 46.4 0.2 30 561-591 152-181 (344)
382 PF05970 PIF1: PIF1-like helic 51.1 8.3 0.00018 44.9 1.8 37 550-589 3-39 (364)
383 PF13671 AAA_33: AAA domain; P 51.0 5.8 0.00013 38.8 0.4 15 575-589 2-16 (143)
384 COG1223 Predicted ATPase (AAA+ 50.9 9.8 0.00021 42.7 2.1 47 572-618 151-210 (368)
385 PF03215 Rad17: Rad17 cell cyc 50.8 7.9 0.00017 47.4 1.6 32 559-590 30-63 (519)
386 PTZ00361 26 proteosome regulat 50.4 14 0.00029 44.5 3.4 95 496-590 127-235 (438)
387 PF06785 UPF0242: Uncharacteri 50.2 4.8E+02 0.01 30.5 16.5 13 604-616 282-294 (401)
388 PF11559 ADIP: Afadin- and alp 50.2 2.9E+02 0.0063 28.0 16.6 18 343-360 67-84 (151)
389 KOG2412 Nuclear-export-signal 50.1 6E+02 0.013 31.6 18.4 16 483-498 358-373 (591)
390 PRK10361 DNA recombination pro 50.0 5.7E+02 0.012 31.4 21.5 24 347-370 79-102 (475)
391 PRK13900 type IV secretion sys 49.9 7.9 0.00017 44.7 1.3 29 561-590 150-178 (332)
392 PF07724 AAA_2: AAA domain (Cd 49.4 6.7 0.00015 40.9 0.6 17 573-589 4-20 (171)
393 PF13238 AAA_18: AAA domain; P 49.2 6.4 0.00014 37.3 0.4 15 575-589 1-15 (129)
394 PF05496 RuvB_N: Holliday junc 48.9 16 0.00034 40.3 3.3 42 547-588 23-66 (233)
395 PRK13764 ATPase; Provisional 48.9 7.8 0.00017 48.2 1.1 20 572-591 257-276 (602)
396 KOG4403 Cell surface glycoprot 48.8 5.6E+02 0.012 30.9 17.5 32 463-494 397-428 (575)
397 PF03962 Mnd1: Mnd1 family; I 48.7 2.3E+02 0.0051 30.2 12.0 93 378-475 62-154 (188)
398 KOG0335 ATP-dependent RNA heli 48.7 7.2 0.00016 46.9 0.8 66 564-635 105-189 (482)
399 PRK11519 tyrosine kinase; Prov 48.4 4E+02 0.0087 34.2 16.2 21 571-591 526-546 (719)
400 PRK11192 ATP-dependent RNA hel 48.3 9.5 0.00021 45.1 1.7 26 562-589 30-55 (434)
401 PF11802 CENP-K: Centromere-as 48.1 4.6E+02 0.01 29.7 20.3 42 288-330 32-75 (268)
402 TIGR03545 conserved hypothetic 48.0 1.6E+02 0.0035 36.6 12.1 18 540-557 356-373 (555)
403 KOG0247 Kinesin-like protein [ 48.0 3.3E+02 0.0072 34.8 14.4 22 254-275 490-511 (809)
404 KOG1265 Phospholipase C [Lipid 47.9 4.9E+02 0.011 34.1 15.9 139 257-400 1041-1179(1189)
405 COG0419 SbcC ATPase involved i 47.8 8E+02 0.017 32.4 29.4 230 259-494 506-750 (908)
406 PF00804 Syntaxin: Syntaxin; 47.4 2.1E+02 0.0045 26.2 10.2 65 342-407 7-71 (103)
407 PF07728 AAA_5: AAA domain (dy 47.3 6 0.00013 38.8 -0.1 16 575-590 2-17 (139)
408 PRK04195 replication factor C 47.1 12 0.00026 45.2 2.4 33 558-590 24-57 (482)
409 cd07655 F-BAR_PACSIN The F-BAR 47.1 4.5E+02 0.0097 29.3 18.8 26 349-374 126-151 (258)
410 KOG0926 DEAH-box RNA helicase 47.1 13 0.00027 47.2 2.5 18 572-589 271-288 (1172)
411 KOG4593 Mitotic checkpoint pro 46.9 7.3E+02 0.016 31.7 27.6 17 226-242 57-73 (716)
412 TIGR00763 lon ATP-dependent pr 46.4 57 0.0012 42.1 8.3 16 574-589 349-364 (775)
413 PHA02544 44 clamp loader, smal 46.4 10 0.00022 42.6 1.6 23 569-591 39-62 (316)
414 TIGR00348 hsdR type I site-spe 46.2 12 0.00026 47.3 2.2 31 560-591 247-282 (667)
415 PLN03229 acetyl-coenzyme A car 46.1 2.5E+02 0.0054 36.0 13.2 56 334-389 461-526 (762)
416 PF09738 DUF2051: Double stran 46.1 2.8E+02 0.0061 31.9 12.8 18 387-404 149-166 (302)
417 PF10234 Cluap1: Clusterin-ass 46.1 5E+02 0.011 29.5 17.3 43 380-422 192-234 (267)
418 PHA00729 NTP-binding motif con 46.0 14 0.0003 40.6 2.4 30 562-591 7-36 (226)
419 PRK06547 hypothetical protein; 45.9 14 0.00031 38.5 2.4 27 563-589 6-32 (172)
420 PRK04837 ATP-dependent RNA hel 45.9 11 0.00023 44.6 1.6 26 562-589 37-62 (423)
421 PLN03137 ATP-dependent DNA hel 45.8 1.3E+02 0.0029 40.4 11.3 27 561-589 466-492 (1195)
422 PF09738 DUF2051: Double stran 45.7 3.7E+02 0.0081 31.0 13.7 17 351-367 79-95 (302)
423 cd01383 MYSc_type_VIII Myosin 45.6 15 0.00033 46.5 2.9 35 555-589 74-109 (677)
424 COG4026 Uncharacterized protei 45.6 3.2E+02 0.007 30.1 12.2 23 382-404 181-203 (290)
425 KOG0742 AAA+-type ATPase [Post 45.5 6.4E+02 0.014 30.6 22.2 329 276-625 93-449 (630)
426 PRK00409 recombination and DNA 45.4 3.9E+02 0.0085 34.8 15.4 35 560-612 721-756 (782)
427 PF06414 Zeta_toxin: Zeta toxi 45.4 8.6 0.00019 40.6 0.7 21 570-590 13-33 (199)
428 PRK10590 ATP-dependent RNA hel 45.2 12 0.00026 44.8 1.9 26 562-589 30-55 (456)
429 PRK14722 flhF flagellar biosyn 45.1 8 0.00017 45.4 0.4 19 573-591 138-156 (374)
430 KOG0999 Microtubule-associated 44.9 7.1E+02 0.015 31.0 23.9 22 272-293 57-78 (772)
431 KOG1853 LIS1-interacting prote 44.8 5E+02 0.011 29.2 21.3 11 310-320 48-58 (333)
432 PF04912 Dynamitin: Dynamitin 44.8 5.9E+02 0.013 30.1 17.9 35 436-470 348-382 (388)
433 PRK11448 hsdR type I restricti 44.8 12 0.00026 50.0 1.9 41 557-608 419-459 (1123)
434 KOG2072 Translation initiation 44.6 8.5E+02 0.018 31.8 23.7 40 33-73 293-332 (988)
435 PRK10536 hypothetical protein; 44.5 13 0.00027 41.7 1.8 42 541-591 52-93 (262)
436 PF07111 HCR: Alpha helical co 44.4 8E+02 0.017 31.5 26.5 44 353-396 137-180 (739)
437 cd01385 MYSc_type_IX Myosin mo 44.3 16 0.00034 46.4 2.8 36 554-589 75-111 (692)
438 smart00242 MYSc Myosin. Large 44.2 15 0.00032 46.6 2.5 36 554-589 73-109 (677)
439 COG1222 RPT1 ATP-dependent 26S 44.1 13 0.00028 43.4 1.8 79 542-621 149-247 (406)
440 KOG3091 Nuclear pore complex, 44.1 3.6E+02 0.0077 33.0 13.5 16 264-279 337-352 (508)
441 TIGR02881 spore_V_K stage V sp 44.0 8.4 0.00018 42.5 0.3 19 573-591 43-61 (261)
442 cd01384 MYSc_type_XI Myosin mo 43.8 17 0.00036 46.1 2.9 35 555-589 70-105 (674)
443 TIGR01000 bacteriocin_acc bact 43.7 6.6E+02 0.014 30.3 19.6 6 491-496 322-327 (457)
444 cd00124 MYSc Myosin motor doma 43.5 16 0.00034 46.3 2.6 36 554-589 67-103 (679)
445 cd01381 MYSc_type_VII Myosin m 43.5 17 0.00037 45.9 3.0 35 555-589 68-103 (671)
446 PF10211 Ax_dynein_light: Axon 43.3 4.4E+02 0.0096 28.2 15.5 123 229-395 65-187 (189)
447 PF11932 DUF3450: Protein of u 43.3 4.9E+02 0.011 28.7 16.5 12 488-499 160-171 (251)
448 PF10146 zf-C4H2: Zinc finger- 43.2 5E+02 0.011 28.8 14.0 13 434-446 91-103 (230)
449 COG0497 RecN ATPase involved i 43.0 7.7E+02 0.017 30.9 17.1 148 226-394 237-387 (557)
450 KOG0239 Kinesin (KAR3 subfamil 43.0 6.2E+02 0.014 32.4 16.3 27 57-83 22-48 (670)
451 cd01387 MYSc_type_XV Myosin mo 42.8 17 0.00036 46.1 2.7 36 554-589 68-104 (677)
452 PF09321 DUF1978: Domain of un 42.7 4.9E+02 0.011 29.1 13.4 35 117-151 13-47 (241)
453 PF00769 ERM: Ezrin/radixin/mo 42.7 5.2E+02 0.011 28.8 16.4 8 264-271 8-15 (246)
454 PF08826 DMPK_coil: DMPK coile 42.5 2E+02 0.0043 25.5 8.4 44 353-404 15-58 (61)
455 cd01378 MYSc_type_I Myosin mot 42.4 18 0.00039 45.7 3.0 35 555-589 68-103 (674)
456 PRK00106 hypothetical protein; 42.4 7.8E+02 0.017 30.7 22.6 13 482-494 206-218 (535)
457 COG1219 ClpX ATP-dependent pro 42.2 11 0.00023 43.5 0.8 17 572-588 97-113 (408)
458 PRK10869 recombination and rep 42.2 7.8E+02 0.017 30.7 26.6 22 596-617 459-480 (553)
459 KOG0579 Ste20-like serine/thre 41.8 8.7E+02 0.019 31.2 27.2 16 54-69 504-519 (1187)
460 TIGR01241 FtsH_fam ATP-depende 41.3 9.2 0.0002 46.3 0.1 51 540-590 51-106 (495)
461 TIGR01069 mutS2 MutS2 family p 41.1 1.7E+02 0.0036 38.0 11.1 18 117-134 266-283 (771)
462 TIGR03752 conj_TIGR03752 integ 41.1 2.1E+02 0.0045 34.9 11.0 12 539-550 194-205 (472)
463 PF05622 HOOK: HOOK protein; 40.9 9.1 0.0002 48.6 0.0 14 32-45 76-89 (713)
464 PRK11889 flhF flagellar biosyn 40.8 17 0.00037 43.3 2.2 18 573-590 242-259 (436)
465 PF12775 AAA_7: P-loop contain 40.7 13 0.00028 41.7 1.2 30 561-591 23-52 (272)
466 cd01377 MYSc_type_II Myosin mo 40.5 19 0.00041 45.7 2.7 36 554-589 72-108 (693)
467 KOG1003 Actin filament-coating 40.3 5.2E+02 0.011 28.1 21.4 29 309-337 6-34 (205)
468 KOG0982 Centrosomal protein Nu 40.1 7.5E+02 0.016 29.9 19.8 40 420-459 321-360 (502)
469 PRK00771 signal recognition pa 40.0 24 0.00053 42.4 3.4 20 572-591 95-114 (437)
470 PRK00080 ruvB Holliday junctio 40.0 16 0.00034 41.8 1.7 39 552-590 29-69 (328)
471 PF05529 Bap31: B-cell recepto 40.0 1.3E+02 0.0027 31.9 8.4 7 278-284 99-105 (192)
472 PRK13341 recombination factor 40.0 15 0.00032 46.9 1.6 46 542-591 26-71 (725)
473 KOG0163 Myosin class VI heavy 39.8 9E+02 0.02 31.4 16.1 141 263-403 852-1005(1259)
474 cd01380 MYSc_type_V Myosin mot 39.8 20 0.00043 45.5 2.8 35 555-589 68-103 (691)
475 TIGR00614 recQ_fam ATP-depende 39.7 17 0.00037 43.7 2.1 27 562-590 18-44 (470)
476 cd01382 MYSc_type_VI Myosin mo 39.7 20 0.00042 45.8 2.6 35 555-589 73-108 (717)
477 PF07989 Microtub_assoc: Micro 39.6 1.8E+02 0.0038 26.7 8.0 27 334-360 6-32 (75)
478 KOG1655 Protein involved in va 39.6 5.3E+02 0.012 28.0 12.8 47 433-479 99-149 (218)
479 PF11932 DUF3450: Protein of u 39.5 5.6E+02 0.012 28.3 16.3 28 322-349 43-70 (251)
480 KOG1962 B-cell receptor-associ 39.4 4.9E+02 0.011 28.7 12.7 115 253-373 88-210 (216)
481 KOG2373 Predicted mitochondria 39.0 25 0.00055 40.9 3.1 29 562-591 261-292 (514)
482 KOG2543 Origin recognition com 38.7 11 0.00024 44.2 0.3 17 574-590 32-48 (438)
483 cd09237 V_ScBro1_like Protein- 38.1 7.1E+02 0.015 29.0 24.6 80 415-494 259-343 (356)
484 TIGR00634 recN DNA repair prot 38.1 8.8E+02 0.019 30.1 22.6 177 307-484 168-374 (563)
485 PRK00440 rfc replication facto 38.0 13 0.00029 41.4 0.8 22 569-590 35-56 (319)
486 PF05700 BCAS2: Breast carcino 38.0 5.7E+02 0.012 27.9 15.7 24 382-405 140-163 (221)
487 PF01576 Myosin_tail_1: Myosin 37.9 11 0.00023 49.0 0.0 27 381-407 457-483 (859)
488 PLN03025 replication factor C 37.8 16 0.00034 41.7 1.3 18 574-591 36-53 (319)
489 PF04048 Sec8_exocyst: Sec8 ex 37.8 4.5E+02 0.0097 26.6 13.0 72 410-493 62-133 (142)
490 PRK11634 ATP-dependent RNA hel 37.6 16 0.00035 45.8 1.5 25 563-589 36-60 (629)
491 PRK01297 ATP-dependent RNA hel 37.5 17 0.00036 43.7 1.5 27 562-590 116-142 (475)
492 PRK09841 cryptic autophosphory 37.4 6.9E+02 0.015 32.1 15.8 156 323-499 255-410 (726)
493 PF05729 NACHT: NACHT domain 37.3 13 0.00028 36.7 0.5 16 574-589 2-17 (166)
494 PF00735 Septin: Septin; Inte 37.3 12 0.00027 42.1 0.4 18 570-587 2-19 (281)
495 PF15066 CAGE1: Cancer-associa 37.1 8.6E+02 0.019 29.7 22.5 185 259-466 343-527 (527)
496 PRK05703 flhF flagellar biosyn 36.9 12 0.00027 44.5 0.3 16 574-589 223-238 (424)
497 cd01120 RecA-like_NTPases RecA 36.8 12 0.00025 36.7 0.1 15 575-589 2-16 (165)
498 PF08614 ATG16: Autophagy prot 36.7 5.2E+02 0.011 27.4 12.5 118 309-427 76-193 (194)
499 TIGR01618 phage_P_loop phage n 36.7 13 0.00029 40.5 0.5 17 572-588 12-28 (220)
500 PF07058 Myosin_HC-like: Myosi 36.4 1.8E+02 0.0039 33.4 9.0 135 344-501 2-136 (351)
No 1
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=1.3e-97 Score=888.68 Aligned_cols=594 Identities=37% Similarity=0.501 Sum_probs=508.3
Q ss_pred CCCCcchHHHHHHHHHhHhhhhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHhhHHHHHHHHHHHhhhhcc
Q 001734 225 DNASTKSLFNIVNRILDECVERKNGDAPHRVACLLRKVVPLIERRTATQYQNFKNQNNLFRAREEKYKSRIRVLETLTVG 304 (1019)
Q Consensus 225 ~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~l~kvv~e~e~~is~q~~~~~~q~~~~~~~~~~~~~~~~~le~l~~~ 304 (1019)
.+.+...+..+...+++...+++...+.......++..+.++..+++.+...+.+....++..++.+.+.+..+.+++.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~ 150 (670)
T KOG0239|consen 71 SNQPGGLLARLFKELIDLANSDKTSNVVEAYNERLRDLLSELQSNLSELNMALLESVEELSQAEEDNPSIFVSLLELAQE 150 (670)
T ss_pred hcCcchhHHHhhhhcccccccCCCchhHHHHHHHHhhhccccccchhhhhhhhhhhhHhhhhhhcccccHHHHHHHHHhh
Confidence 36788778888888888888888877777778899999999999999999999999999999999999999999998877
Q ss_pred chhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001734 305 TTEENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQ 384 (1019)
Q Consensus 305 ~~ee~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~l~ke~~~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le 384 (1019)
+........+. ......+ .+.-..|+......++..+.++|+..+..++..+.+++. ....+..|+
T Consensus 151 ~~~~~~~~~~~------------~~~~~~~-~~~~~~k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~-~~~~~~~l~ 216 (670)
T KOG0239|consen 151 NRGLYLDLSKV------------TPENSLS-LLDLALKESLKLESDLGDLVTELEHVTNSISELESVLKS-AQEERRVLA 216 (670)
T ss_pred hcccccccccc------------chhhhHH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHH
Confidence 76543332211 0000011 233445666677888999999999999999998888887 233334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHhhhhh
Q 001734 385 KKLQELERLLTVSKKKVEELESLSESKSQRWKRIEHSYQSFMGCQLGVIQDLRVAFESTKHEVLETKKNYSKEFDCLGLN 464 (1019)
Q Consensus 385 ~~l~e~~~~l~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~l~~Q~~~l~el~~~~~~~k~ei~~~~~~~~~e~~~l~~~ 464 (1019)
..+. .+...+..++.++.......+ .++..+..+++|+.....++.++..+++.+.+.+..++..
T Consensus 217 ~~~~----~~~~~~~~~~~l~~~~~~~~~-----------~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 281 (670)
T KOG0239|consen 217 DSLG----NYADLRRNIKPLEGLESTIKK-----------KIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTL 281 (670)
T ss_pred HHhh----hhhhHHHhhhhhhhhhhHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433 333445555555544433332 2555667788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH---HHhhhhhhhhhhccCCEEEEeecCCCCCCccCC-CccEEEeCCCCeEEEeCCCCCCCCCcee
Q 001734 465 LKRLIDAAEKYHVIL---AENRRLYNEVQDLKGNIRVYCRIRPFLPGQSKK-QTTIEYIGENGELVVSNPLKQGKDNHRL 540 (1019)
Q Consensus 465 l~~l~~~~~~~~~~l---~erR~L~N~vqelkGnIrV~~RVRP~~~~e~~~-~~~v~~~~~~~~~~i~~p~~~~~~~~k~ 540 (1019)
+..|.+....|+... .+||+|||+|+||||||||||||||+++++... ...+...++.+++.+..|....+...+.
T Consensus 282 ~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGnIRV~CRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (670)
T KOG0239|consen 282 QSDLESLEENLVEKKKEKEERRKLHNEILELKGNIRVFCRVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGDKLEPQS 361 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCceEEEEecCCCccccccccccccccCCcceeEeecCCCCCCCcccc
Confidence 999999999998777 899999999999999999999999999998774 4555555555778899998877777778
Q ss_pred eeeceeeCCCCChHHHHhchHHHHHHHHcCcceeEEeecccCCCCceeeecCCCCCCCccchhHHHHHHHHHHHhhccCC
Q 001734 541 FKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKNS 620 (1019)
Q Consensus 541 F~FD~VF~~~atQeeVf~~~~pLV~svLdG~N~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~ 620 (1019)
|.||+||+|.++|++||.++.|+|+++|||||+||||||||||||||||.|| +++++|||||++++||..+.....+
T Consensus 362 f~fdkVf~p~~sQ~~VF~e~~~lv~S~lDGYnVCIFAYGQTGSGKTyTM~G~---~~~~~Giipral~~lF~~~~~~~~g 438 (670)
T KOG0239|consen 362 FKFDKVFGPLASQDDVFEEVSPLVQSALDGYNVCIFAYGQTGSGKTYTMSGP---TPEDPGIIPRALEKLFRTITSLKSG 438 (670)
T ss_pred ceeeeecCCcccHHHHHHHHHHHHHHHhcCcceeEEEecccCCCccccccCC---CcccCCccHHHHHHHHHHHHhhccC
Confidence 9999999999999999999999999999999999999999999999999996 5788999999999999999998889
Q ss_pred ceEEEEEEEEEEecceeeeccCCCCCCcccccccccCCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCC
Q 001734 621 ILYEVGVQMVEIYNEQVRDLLSSDGPQRRLGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSS 700 (1019)
Q Consensus 621 ~~~~V~vS~lEIYnE~V~DLL~~~~~~~~l~i~~~~~~g~~vv~~~~~~vv~s~edv~~ll~~g~~nR~~~sT~~N~~SS 700 (1019)
|.|.+.+||+|||||+|+|||++.....++.|... ..+...+.+++...|.+.+++..+++.|..||++++|++|++||
T Consensus 439 ~~y~~~~s~~EIYNe~i~DlL~~~~~~~k~~I~~~-~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SS 517 (670)
T KOG0239|consen 439 WKYDKTVSMLEIYNEAIRDLLSDESYVGKLEIVDD-AEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSS 517 (670)
T ss_pred ceEEeeeehhHHHHHHHHHhccccccccceeEEEc-CCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhh
Confidence 99999999999999999999987753445555544 34568888888899999999999999999999999999999999
Q ss_pred CCcceEEEEEEeEecCCCcEEEeeeEEEecCCCccccCCcchhhhHHHHHHHhHhHHHHHHHHHHHhcCCCCccCcCchh
Q 001734 701 RSHSILTIHVRGTDLKNGAILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKNPHVPYRNSKL 780 (1019)
Q Consensus 701 RSH~IftI~V~~~~~~~~~~~~skL~lVDLAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~~hIPYRdSKL 780 (1019)
|||+||+|+|.+.+..++..+.|+|+|||||||||+++++++|+|++|+++||+||++||+||.||+.++.|||||||||
T Consensus 518 RSH~v~~v~v~g~~~~t~~~~~g~l~LVDLAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~k~~HiPyRNSKL 597 (670)
T KOG0239|consen 518 RSHLVFRVRIRGINELTGIRVTGVLNLVDLAGSERVSKSGVTGERLKEAQNINKSLSALGDVISALASKRSHIPYRNSKL 597 (670)
T ss_pred ccceEEEEEEeccccCcccccccceeEeecccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhhcCCCCcccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCCccccceeEecCCCCCCHHHHHHHHHHHhHhccccccccccCCCcchHHHHHHHHHHHHHHH
Q 001734 781 TQVLQSSLGGQAKTLMMVQLNPDVDSYSETISTLKFAERVSGVELGAARSNKEGSDVRELMEQVGSLKDII 851 (1019)
Q Consensus 781 TrLLqdSLGGnskT~mI~~ISP~~~~~~ETlsTL~FA~Rak~I~~~~~k~~~~~~~v~eL~~ev~~Lk~~i 851 (1019)
|+|||+||||++||+|||+|||...++.||+++|+||+||+.+.+++++......+...++..+..++..+
T Consensus 598 T~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~~~~~~~~~~~~~~~~~~~~~~~ 668 (670)
T KOG0239|consen 598 TQLLQDSLGGDSKTLMFVNISPAAAALFETLCSLRFATRVRSVELGSARKQVSTSDDVSLKRFGQLEKLST 668 (670)
T ss_pred HHHhHhhhCCccceeeEEEeCccHHHHhhhhhccchHHHhhceecccccccccccchhhhhhhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999888888888777777666543
No 2
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.8e-85 Score=761.56 Aligned_cols=355 Identities=41% Similarity=0.652 Sum_probs=313.2
Q ss_pred cCCEEEEeecCCCCCCccCC--CccEEEeCCCCeEEEeCCCCCCCCCceeeeeceeeCCCCChHHHHhc-hHHHHHHHHc
Q 001734 493 KGNIRVYCRIRPFLPGQSKK--QTTIEYIGENGELVVSNPLKQGKDNHRLFKFNKVFGPEASQEEVFLD-TRPLIRSVLD 569 (1019)
Q Consensus 493 kGnIrV~~RVRP~~~~e~~~--~~~v~~~~~~~~~~i~~p~~~~~~~~k~F~FD~VF~~~atQeeVf~~-~~pLV~svLd 569 (1019)
.-+|+|++||||+.+.+... ...+.+.+..+.+.+.+|..+.....++|+||+||+++++|++||.. +.|+|++||+
T Consensus 4 ~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl~ 83 (574)
T KOG4280|consen 4 ACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVESVLE 83 (574)
T ss_pred ccceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHHHhc
Confidence 35799999999998755432 33455556677888888876666677889999999999999999988 5999999999
Q ss_pred CcceeEEeecccCCCCceeeecCCCCCCCccchhHHHHHHHHHHHhhccCCceEEEEEEEEEEecceeeeccCCCCCCcc
Q 001734 570 GYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRR 649 (1019)
Q Consensus 570 G~N~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~ 649 (1019)
|||+||||||||||||||||.|+ ++...|||||++.+||..++.+.+...|.|+|||+|||||+|+|||++..+ +.
T Consensus 84 GyNgtvFaYGQTGsGKTyTM~G~---~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~~-~~ 159 (574)
T KOG4280|consen 84 GYNGTVFAYGQTGSGKTYTMIGP---DPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVNP-KG 159 (574)
T ss_pred ccCceEEEeccCCCCCceEeeCC---ChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccCc-CC
Confidence 99999999999999999999998 378899999999999999998887779999999999999999999998764 45
Q ss_pred cccccccCCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCCCCcceEEEEEEeEec-C--CCcEEEeeeE
Q 001734 650 LGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDL-K--NGAILRGSLH 726 (1019)
Q Consensus 650 l~i~~~~~~g~~vv~~~~~~vv~s~edv~~ll~~g~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~-~--~~~~~~skL~ 726 (1019)
+.++.+. ..|+++.+++...+.+++|++.+|..|.++|.+++|.||..|||||+||||+|++... . .....+|+||
T Consensus 160 l~lre~p-~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~~~~~~~~rln 238 (574)
T KOG4280|consen 160 LELREDP-KCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSDGGLMSGRSSKLN 238 (574)
T ss_pred ceeeEcC-CCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccCCCccccccceee
Confidence 6666655 6788899999999999999999999999999999999999999999999999998221 2 2345789999
Q ss_pred EEecCCCccccCCcchhhhHHHHHHHhHhHHHHHHHHHHHhcCCC-CccCcCchhhhhhhhccCCccccceeEecCCCCC
Q 001734 727 LIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKNP-HVPYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVD 805 (1019)
Q Consensus 727 lVDLAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~~-hIPYRdSKLTrLLqdSLGGnskT~mI~~ISP~~~ 805 (1019)
|||||||||..++++.|+|++||.+||+||++||+||.||++..+ ||||||||||+||||||||||||+|||||+|+..
T Consensus 239 lvDLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~~ 318 (574)
T KOG4280|consen 239 LVDLAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSSD 318 (574)
T ss_pred eeeccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceEEEEEecCchhh
Confidence 999999999999999999999999999999999999999998776 9999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhHhccccccccccCCCc-chHHHHHHHHHHHHHHHH
Q 001734 806 SYSETISTLKFAERVSGVELGAARSNKEG-SDVRELMEQVGSLKDIIT 852 (1019)
Q Consensus 806 ~~~ETlsTL~FA~Rak~I~~~~~k~~~~~-~~v~eL~~ev~~Lk~~i~ 852 (1019)
+++||++||+||+|++.|++.|..+.... ..+++|++++..|+..+.
T Consensus 319 ~~~ETlsTLrfA~Rak~I~nk~~ined~~~~~~~~lq~ei~~Lk~~l~ 366 (574)
T KOG4280|consen 319 NYEETLSTLRFAQRAKAIKNKPVINEDPKDALLRELQEEIERLKKELD 366 (574)
T ss_pred hhHHHHHHHHHHHHHHHhhccccccCCcchhhHHHHHHHHHHHHHhhc
Confidence 99999999999999999999987755444 456666666666655544
No 3
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=5.5e-83 Score=766.65 Aligned_cols=357 Identities=38% Similarity=0.582 Sum_probs=309.1
Q ss_pred cCCEEEEeecCCCCCCccCCCccEEEe--CCCCeEEEeCCCCCCCCCceeeeeceeeCCCCChHHHHhc-hHHHHHHHHc
Q 001734 493 KGNIRVYCRIRPFLPGQSKKQTTIEYI--GENGELVVSNPLKQGKDNHRLFKFNKVFGPEASQEEVFLD-TRPLIRSVLD 569 (1019)
Q Consensus 493 kGnIrV~~RVRP~~~~e~~~~~~v~~~--~~~~~~~i~~p~~~~~~~~k~F~FD~VF~~~atQeeVf~~-~~pLV~svLd 569 (1019)
--||+|+|||||++..|....+.+.+. +...+|.|... ..++...|+|+||+||||.+.|.+||.. +.|+|..|+.
T Consensus 48 ~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~-~~sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl~ 126 (1041)
T KOG0243|consen 48 EVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQT-IASKQIDKTFTFDKVFGPESQQEDLYDQAVSPIIKEVLE 126 (1041)
T ss_pred CCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecc-cccccccceeecceeeCcchhHHHHHHHHHHHHHHHHhc
Confidence 359999999999998887655443332 22345776654 2233357899999999999999999987 6999999999
Q ss_pred CcceeEEeecccCCCCceeeecCC----CCCCCccchhHHHHHHHHHHHhhccCCceEEEEEEEEEEecceeeeccCCCC
Q 001734 570 GYNVCIFAYGQTGSGKTYTMSGPC----ISSTEDWGVNYRALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLSSDG 645 (1019)
Q Consensus 570 G~N~~IfAYGQTGSGKTyTM~G~~----~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~ 645 (1019)
|||||||||||||+||||||+|.. +..+.+.||||||+.+||+.++... ..|.|.|||+|+|||.|+|||++..
T Consensus 127 GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~~--~EYsvKVSfLELYNEEl~DLLa~~~ 204 (1041)
T KOG0243|consen 127 GYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQG--AEYSVKVSFLELYNEELTDLLASED 204 (1041)
T ss_pred cCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhcC--CeEEEEEEehhhhhHHHHHhcCCcc
Confidence 999999999999999999999952 3356788999999999999988643 7899999999999999999999876
Q ss_pred CC-ccccccccc----CCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCCCCcceEEEEEEeEecCC---
Q 001734 646 PQ-RRLGIWNAT----LPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLKN--- 717 (1019)
Q Consensus 646 ~~-~~l~i~~~~----~~g~~vv~~~~~~vv~s~edv~~ll~~g~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~~--- 717 (1019)
.. +.+.+..+. ..|++++.|+.+..|.++.|++.+|..|...|.+++|.||.+|||||+||+|+|.......
T Consensus 205 ~~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~~ge 284 (1041)
T KOG0243|consen 205 TSDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTPEGE 284 (1041)
T ss_pred ccccccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCCcch
Confidence 54 444444444 4589999999999999999999999999999999999999999999999999996543322
Q ss_pred CcEEEeeeEEEecCCCccccCCcchhhhHHHHHHHhHhHHHHHHHHHHHhcCCCCccCcCchhhhhhhhccCCcccccee
Q 001734 718 GAILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKNPHVPYRNSKLTQVLQSSLGGQAKTLMM 797 (1019)
Q Consensus 718 ~~~~~skL~lVDLAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~~hIPYRdSKLTrLLqdSLGGnskT~mI 797 (1019)
.-+..|+|+||||||||.++++|+.+.|.+|+..||+||.+||+||.||.++..|||||+|||||||||||||.+||+||
T Consensus 285 elvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~s~HIPYRESKLTRLLQDSLGGkTKT~iI 364 (1041)
T KOG0243|consen 285 ELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEHSGHIPYRESKLTRLLQDSLGGKTKTCII 364 (1041)
T ss_pred hhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhCCCceeEEE
Confidence 23567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHhHhccccccccccCCCcc--hHHHHHHHHHHHHHHHH
Q 001734 798 VQLNPDVDSYSETISTLKFAERVSGVELGAARSNKEGS--DVRELMEQVGSLKDIIT 852 (1019)
Q Consensus 798 ~~ISP~~~~~~ETlsTL~FA~Rak~I~~~~~k~~~~~~--~v~eL~~ev~~Lk~~i~ 852 (1019)
|||||+..+++||++||.||.|||+|+++|..+.+-.+ .++++-.++..||..+.
T Consensus 365 ATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~ 421 (1041)
T KOG0243|consen 365 ATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLA 421 (1041)
T ss_pred EEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999877655433 36777777777777665
No 4
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.7e-82 Score=747.90 Aligned_cols=355 Identities=37% Similarity=0.576 Sum_probs=304.9
Q ss_pred CCEEEEeecCCCCCCccCCCccEEEeCCCCeEEEeCCCCCCCCCceeeeeceeeCC-------CCChHHHHhc-hHHHHH
Q 001734 494 GNIRVYCRIRPFLPGQSKKQTTIEYIGENGELVVSNPLKQGKDNHRLFKFNKVFGP-------EASQEEVFLD-TRPLIR 565 (1019)
Q Consensus 494 GnIrV~~RVRP~~~~e~~~~~~v~~~~~~~~~~i~~p~~~~~~~~k~F~FD~VF~~-------~atQeeVf~~-~~pLV~ 565 (1019)
.+|.|.||||||+..|....+...+...++++.|.+|... ++ ...|+||+.|+. -++|..||++ +.+|++
T Consensus 4 ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~-k~-~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~ 81 (1221)
T KOG0245|consen 4 SSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGS-KD-APKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLD 81 (1221)
T ss_pred CceEEEEEeccchhhhhhcccceEEEecCCceeeecCCCc-cc-CCceecceeeecCCCCCCchhhHHHHHHHHhHHHHH
Confidence 4799999999999998766444333334456666666422 22 344999999964 3889999999 599999
Q ss_pred HHHcCcceeEEeecccCCCCceeeecCCCCCCCccchhHHHHHHHHHHHhh-ccCCceEEEEEEEEEEecceeeeccCCC
Q 001734 566 SVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISES-RKNSILYEVGVQMVEIYNEQVRDLLSSD 644 (1019)
Q Consensus 566 svLdG~N~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~-~~~~~~~~V~vS~lEIYnE~V~DLL~~~ 644 (1019)
.+++|||+||||||||||||||||+|.. .++++|||||+|++||..+.. ......|.|.|||+|||||.|+|||+..
T Consensus 82 ~AfEGYN~ClFAYGQTGSGKSYTMMG~~--~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p 159 (1221)
T KOG0245|consen 82 HAFEGYNVCLFAYGQTGSGKSYTMMGFQ--EPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAP 159 (1221)
T ss_pred HHhcccceEEEEeccCCCCcceeeeccC--CCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCC
Confidence 9999999999999999999999999964 568899999999999997764 4456899999999999999999999953
Q ss_pred CCCcccccccccCCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCCCCcceEEEEEEeEecCC--C--cE
Q 001734 645 GPQRRLGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLKN--G--AI 720 (1019)
Q Consensus 645 ~~~~~l~i~~~~~~g~~vv~~~~~~vv~s~edv~~ll~~g~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~~--~--~~ 720 (1019)
.+...+.+++.+.. |.++.+++...|++..|+.++|..|++.|++++|+||+.|||||+||||.+.+..... + ..
T Consensus 160 ~~kg~LRVREHP~l-GPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l~se 238 (1221)
T KOG0245|consen 160 KSKGGLRVREHPIL-GPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGLDSE 238 (1221)
T ss_pred CCCCCceeeccCcc-ChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCCCcce
Confidence 44455666655544 4566677777888889999999999999999999999999999999999999876543 3 56
Q ss_pred EEeeeEEEecCCCccccCCcchhhhHHHHHHHhHhHHHHHHHHHHHhcC-------CCCccCcCchhhhhhhhccCCccc
Q 001734 721 LRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHK-------NPHVPYRNSKLTQVLQSSLGGQAK 793 (1019)
Q Consensus 721 ~~skL~lVDLAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k-------~~hIPYRdSKLTrLLqdSLGGnsk 793 (1019)
.+|+|+|||||||||++.++++|+|||||.+|||||.+||+||+||++. ..+||||||.|||||+++||||||
T Consensus 239 k~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNSK 318 (1221)
T KOG0245|consen 239 KVSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNSK 318 (1221)
T ss_pred eeeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcch
Confidence 7899999999999999999999999999999999999999999999852 348999999999999999999999
Q ss_pred cceeEecCCCCCCHHHHHHHHHHHhHhccccccccccCC-CcchHHHHHHHHHHHHHHHHH
Q 001734 794 TLMMVQLNPDVDSYSETISTLKFAERVSGVELGAARSNK-EGSDVRELMEQVGSLKDIITK 853 (1019)
Q Consensus 794 T~mI~~ISP~~~~~~ETlsTL~FA~Rak~I~~~~~k~~~-~~~~v~eL~~ev~~Lk~~i~~ 853 (1019)
|+||++|||++.||+|||+|||||.|||+|.++++.+.. ..+.+|+|++||.+||..+..
T Consensus 319 TaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpnaKLIRELreEv~rLksll~~ 379 (1221)
T KOG0245|consen 319 TAMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNAKLIRELREEVARLKSLLRA 379 (1221)
T ss_pred hhhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999998876543 345699999999999998763
No 5
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=1.4e-78 Score=733.87 Aligned_cols=361 Identities=37% Similarity=0.598 Sum_probs=300.4
Q ss_pred hhhhhhhhhhc----cCCEEEEeecCCCCCCccCCCccEEEeCCCCeEEEeCCCCCCCCCceeeeeceeeCCCCChHHHH
Q 001734 482 NRRLYNEVQDL----KGNIRVYCRIRPFLPGQSKKQTTIEYIGENGELVVSNPLKQGKDNHRLFKFNKVFGPEASQEEVF 557 (1019)
Q Consensus 482 rR~L~N~vqel----kGnIrV~~RVRP~~~~e~~~~~~v~~~~~~~~~~i~~p~~~~~~~~k~F~FD~VF~~~atQeeVf 557 (1019)
+|+|..+...- .++|+|||||||+.+.+.. ...+... .++.+.+. .+.|.||+||+++++|++||
T Consensus 82 ~rk~~~~~~~en~~~ds~VkV~VRVRPl~~~E~g-~~iV~~~-s~dsl~I~---------~qtFtFD~VFdp~aTQedVF 150 (1320)
T PLN03188 82 KRKLSAETAPENGVSDSGVKVIVRMKPLNKGEEG-EMIVQKM-SNDSLTIN---------GQTFTFDSIADPESTQEDIF 150 (1320)
T ss_pred hccccccccccccCCCCCeEEEEEcCCCCCccCC-CeeEEEc-CCCeEEEe---------CcEEeCCeeeCCCCCHHHHH
Confidence 35666554333 5799999999999987543 2233333 34455542 25799999999999999999
Q ss_pred hc-hHHHHHHHHcCcceeEEeecccCCCCceeeecCCCC------CCCccchhHHHHHHHHHHHhhc-----cCCceEEE
Q 001734 558 LD-TRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCIS------STEDWGVNYRALNDLFEISESR-----KNSILYEV 625 (1019)
Q Consensus 558 ~~-~~pLV~svLdG~N~~IfAYGQTGSGKTyTM~G~~~~------~~~~~GIipRal~~LF~~~~~~-----~~~~~~~V 625 (1019)
.. +.|+|+++|+|||+||||||||||||||||+|+... ...++|||||++++||..+... ...+.|.|
T Consensus 151 e~vv~PLV~svLdGyNaTIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V 230 (1320)
T PLN03188 151 QLVGAPLVENCLAGFNSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQC 230 (1320)
T ss_pred HHHHHHHHHHHhcCCcceeecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEE
Confidence 98 589999999999999999999999999999997432 3467899999999999987542 23567999
Q ss_pred EEEEEEEecceeeeccCCCCCCcccccccccCCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCCCCcce
Q 001734 626 GVQMVEIYNEQVRDLLSSDGPQRRLGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSI 705 (1019)
Q Consensus 626 ~vS~lEIYnE~V~DLL~~~~~~~~l~i~~~~~~g~~vv~~~~~~vv~s~edv~~ll~~g~~nR~~~sT~~N~~SSRSH~I 705 (1019)
+|||+|||||+|+|||++.. +.+.++.+. .+++++.++++..|.+++|++.+|..|..+|++++|.+|..|||||+|
T Consensus 231 ~vSyLEIYNEkI~DLLsp~~--k~L~IRED~-kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaI 307 (1320)
T PLN03188 231 RCSFLEIYNEQITDLLDPSQ--KNLQIREDV-KSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSV 307 (1320)
T ss_pred EEEEEeeecCcceecccccc--CCceEEEcC-CCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCcee
Confidence 99999999999999998754 345555443 467888999999999999999999999999999999999999999999
Q ss_pred EEEEEEeEecC--C--CcEEEeeeEEEecCCCccccCCcchhhhHHHHHHHhHhHHHHHHHHHHHhc-----CCCCccCc
Q 001734 706 LTIHVRGTDLK--N--GAILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAH-----KNPHVPYR 776 (1019)
Q Consensus 706 ftI~V~~~~~~--~--~~~~~skL~lVDLAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~-----k~~hIPYR 776 (1019)
|+|+|...... . .....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+. +..|||||
T Consensus 308 FtI~Ves~~k~~~dg~ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYR 387 (1320)
T PLN03188 308 FTCVVESRCKSVADGLSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYR 387 (1320)
T ss_pred EEEEEEEeecccCCCCcceEEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCC
Confidence 99999865432 2 235679999999999999999999999999999999999999999999985 45799999
Q ss_pred CchhhhhhhhccCCccccceeEecCCCCCCHHHHHHHHHHHhHhccccccccccCCCcchHHHHHHHHHHHHHHHHHHHH
Q 001734 777 NSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYSETISTLKFAERVSGVELGAARSNKEGSDVRELMEQVGSLKDIITKKDE 856 (1019)
Q Consensus 777 dSKLTrLLqdSLGGnskT~mI~~ISP~~~~~~ETlsTL~FA~Rak~I~~~~~k~~~~~~~v~eL~~ev~~Lk~~i~~~~e 856 (1019)
+||||+||||+|||||+|+|||||||+..+++||++||+||+||+.|++.+..+.....+ +..|+..|.++++
T Consensus 388 DSKLTrLLQDSLGGNSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~~~-------vn~LrelIr~Lk~ 460 (1320)
T PLN03188 388 DSRLTFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDD-------VNFLREVIRQLRD 460 (1320)
T ss_pred cchHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccchhhh-------HHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988765433333 3345555556666
Q ss_pred HHHHHHH
Q 001734 857 EIERLQV 863 (1019)
Q Consensus 857 ei~~lq~ 863 (1019)
|+.+|+.
T Consensus 461 EL~rLK~ 467 (1320)
T PLN03188 461 ELQRVKA 467 (1320)
T ss_pred HHHHHHH
Confidence 6666543
No 6
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=7.9e-78 Score=676.96 Aligned_cols=320 Identities=40% Similarity=0.664 Sum_probs=285.0
Q ss_pred CEEEEeecCCCCCCccCC--CccEEEeCCCCeEEEeCCCCC---------CCCCceeeeeceeeCCCCChHHHHhc-hHH
Q 001734 495 NIRVYCRIRPFLPGQSKK--QTTIEYIGENGELVVSNPLKQ---------GKDNHRLFKFNKVFGPEASQEEVFLD-TRP 562 (1019)
Q Consensus 495 nIrV~~RVRP~~~~e~~~--~~~v~~~~~~~~~~i~~p~~~---------~~~~~k~F~FD~VF~~~atQeeVf~~-~~p 562 (1019)
+|+|||||||+.+.|... ..++.+. ++ .+++.+|... .....+.|.||+||+++++|++||+. +.|
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~-~~-~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~p 78 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVV-DD-RMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKP 78 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEc-CC-CEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHH
Confidence 699999999999877433 3344443 33 4444455432 12346789999999999999999998 589
Q ss_pred HHHHHHcCcceeEEeecccCCCCceeeecCCCCCCCccchhHHHHHHHHHHHhhccCCceEEEEEEEEEEecceeeeccC
Q 001734 563 LIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLS 642 (1019)
Q Consensus 563 LV~svLdG~N~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~ 642 (1019)
+|+++++|||+||||||||||||||||+|+ ..++||+||++++||+.++.....+.|.|++||+|||||+|+|||+
T Consensus 79 lv~~~~~G~n~~i~ayGqtGSGKTyTm~G~----~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~ 154 (338)
T cd01370 79 LVDGVLNGYNATVFAYGATGAGKTHTMLGT----DSDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLS 154 (338)
T ss_pred HHHHHHCCCCceEEeeCCCCCCCeEEEcCC----CCCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCC
Confidence 999999999999999999999999999995 4789999999999999998877788999999999999999999998
Q ss_pred CCCCCcccccccccCCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCCCCcceEEEEEEeEecC---CCc
Q 001734 643 SDGPQRRLGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLK---NGA 719 (1019)
Q Consensus 643 ~~~~~~~l~i~~~~~~g~~vv~~~~~~vv~s~edv~~ll~~g~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~---~~~ 719 (1019)
+.. ..+.++.+. .+++++.++++..+.+++|++.+|..|.++|++++|.+|..|||||+||+|+|.+.+.. ...
T Consensus 155 ~~~--~~l~i~ed~-~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~ 231 (338)
T cd01370 155 PSS--GPLELREDP-NQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASINQQ 231 (338)
T ss_pred CCC--CCceEEEcC-CCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCCCCCCc
Confidence 752 345555443 47788899999999999999999999999999999999999999999999999988775 456
Q ss_pred EEEeeeEEEecCCCccccCCcchhhhHHHHHHHhHhHHHHHHHHHHHhcCC---CCccCcCchhhhhhhhccCCccccce
Q 001734 720 ILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKN---PHVPYRNSKLTQVLQSSLGGQAKTLM 796 (1019)
Q Consensus 720 ~~~skL~lVDLAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~---~hIPYRdSKLTrLLqdSLGGnskT~m 796 (1019)
...|+|+|||||||||..+++..|.+++|+.+||+||++|++||.+|+.++ .|||||+||||+||||+|||||+|+|
T Consensus 232 ~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~ 311 (338)
T cd01370 232 VRIGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTVM 311 (338)
T ss_pred EEEEEEEEEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeEEE
Confidence 788999999999999999999999999999999999999999999999887 89999999999999999999999999
Q ss_pred eEecCCCCCCHHHHHHHHHHHhHhccc
Q 001734 797 MVQLNPDVDSYSETISTLKFAERVSGV 823 (1019)
Q Consensus 797 I~~ISP~~~~~~ETlsTL~FA~Rak~I 823 (1019)
|+||||+..+++||++||+||+||++|
T Consensus 312 I~~vsp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 312 IANISPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred EEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999986
No 7
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=1e-76 Score=667.71 Aligned_cols=320 Identities=41% Similarity=0.608 Sum_probs=276.9
Q ss_pred CCEEEEeecCCCCCCccCCC--ccEEEeCCCCeEEEeCCCCCCCCCceeeeeceeeCCCCChHHHHhc-hHHHHHHHHcC
Q 001734 494 GNIRVYCRIRPFLPGQSKKQ--TTIEYIGENGELVVSNPLKQGKDNHRLFKFNKVFGPEASQEEVFLD-TRPLIRSVLDG 570 (1019)
Q Consensus 494 GnIrV~~RVRP~~~~e~~~~--~~v~~~~~~~~~~i~~p~~~~~~~~k~F~FD~VF~~~atQeeVf~~-~~pLV~svLdG 570 (1019)
++|||||||||+.+.|.... .++.. ..++.+++... ..+.|.||+||+++++|++||+. +.|+|+++++|
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~v~~-~~~~~~~~~~~------~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G 73 (337)
T cd01373 1 PAVKVVVRIRPPNEIEADGGQGQCLKK-LSSDTLVWHSH------PPRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSG 73 (337)
T ss_pred CCeEEEEEcCcCChhhcccCCCeEEEE-cCCCcEEeeCC------CCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 48999999999998775432 23332 23344444321 14689999999999999999998 59999999999
Q ss_pred cceeEEeecccCCCCceeeecCCCC----CCCccchhHHHHHHHHHHHhhc----cCCceEEEEEEEEEEecceeeeccC
Q 001734 571 YNVCIFAYGQTGSGKTYTMSGPCIS----STEDWGVNYRALNDLFEISESR----KNSILYEVGVQMVEIYNEQVRDLLS 642 (1019)
Q Consensus 571 ~N~~IfAYGQTGSGKTyTM~G~~~~----~~~~~GIipRal~~LF~~~~~~----~~~~~~~V~vS~lEIYnE~V~DLL~ 642 (1019)
||+||||||||||||||||+|+... ...++||+||++++||..+... .....|.|.+||+|||||+|+|||+
T Consensus 74 ~n~ti~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~ 153 (337)
T cd01373 74 YNGSIFAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLD 153 (337)
T ss_pred CceeEEEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCC
Confidence 9999999999999999999997532 2357899999999999977543 2457899999999999999999998
Q ss_pred CCCCCcccccccccCCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCCCCcceEEEEEEeEecCCC--cE
Q 001734 643 SDGPQRRLGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLKNG--AI 720 (1019)
Q Consensus 643 ~~~~~~~l~i~~~~~~g~~vv~~~~~~vv~s~edv~~ll~~g~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~~~--~~ 720 (1019)
+... .+.++.+ ..+++++.++++..+.+++|+++++..|.++|++++|.+|.+|||||+||+|+|...+...+ ..
T Consensus 154 ~~~~--~l~i~e~-~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~ 230 (337)
T cd01373 154 PTSR--NLKIRED-IKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKASSTNI 230 (337)
T ss_pred CCCC--CceEEEC-CCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCCCCcE
Confidence 7543 3445443 34668889999999999999999999999999999999999999999999999987765443 35
Q ss_pred EEeeeEEEecCCCccccCCcchhhhHHHHHHHhHhHHHHHHHHHHHhc----CCCCccCcCchhhhhhhhccCCccccce
Q 001734 721 LRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAH----KNPHVPYRNSKLTQVLQSSLGGQAKTLM 796 (1019)
Q Consensus 721 ~~skL~lVDLAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~----k~~hIPYRdSKLTrLLqdSLGGnskT~m 796 (1019)
..|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|++ +..|||||+||||+||||+|||||+|+|
T Consensus 231 ~~s~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~ 310 (337)
T cd01373 231 RTSRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTI 310 (337)
T ss_pred EEEEEEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEEE
Confidence 679999999999999999999999999999999999999999999984 4689999999999999999999999999
Q ss_pred eEecCCCCCCHHHHHHHHHHHhHhccc
Q 001734 797 MVQLNPDVDSYSETISTLKFAERVSGV 823 (1019)
Q Consensus 797 I~~ISP~~~~~~ETlsTL~FA~Rak~I 823 (1019)
||||||+..+++||++||+||+||+.|
T Consensus 311 I~~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 311 IANVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred EEEECCCcccHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999976
No 8
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=1.3e-77 Score=679.22 Aligned_cols=327 Identities=40% Similarity=0.628 Sum_probs=291.4
Q ss_pred cCCEEEEeecCCCCCCccCCCcc-EE-EeCCCCeEEEeCCCCCCCCCceeeeeceeeCCCCChHHHHhc-hHHHHHHHHc
Q 001734 493 KGNIRVYCRIRPFLPGQSKKQTT-IE-YIGENGELVVSNPLKQGKDNHRLFKFNKVFGPEASQEEVFLD-TRPLIRSVLD 569 (1019)
Q Consensus 493 kGnIrV~~RVRP~~~~e~~~~~~-v~-~~~~~~~~~i~~p~~~~~~~~k~F~FD~VF~~~atQeeVf~~-~~pLV~svLd 569 (1019)
-++|+|+||+||.+..|...... +. +.+....+++.. ++.. ++|.||+||.|+++|++||.. +.|+|++||.
T Consensus 6 ~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~----~~~~-~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~ 80 (607)
T KOG0240|consen 6 ECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLET----TKET-KTYVFDRVFSPNATQEDVYEFAAKPIVDDVLL 80 (607)
T ss_pred CCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEec----cccc-ccceeeeecCCCccHHHHHHHHHHHHHHHHhc
Confidence 48999999999998766433222 22 222134444432 2233 789999999999999999988 6999999999
Q ss_pred CcceeEEeecccCCCCceeeecCCCCCCCccchhHHHHHHHHHHHhhccCCceEEEEEEEEEEecceeeeccCCCCCCcc
Q 001734 570 GYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRR 649 (1019)
Q Consensus 570 G~N~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~ 649 (1019)
|||+||||||||||||||||.|... ++...||+||++++||..+........|.|+|||+|||+|+|+|||++... .
T Consensus 81 GYNGTvfaYGqT~sGKTytm~G~~~-d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~k~--n 157 (607)
T KOG0240|consen 81 GYNGTVFAYGQTGSGKTYTMEGIGH-DPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPEKT--N 157 (607)
T ss_pred ccceeEEEecCCCCCcceeecccCC-ChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCcccC--C
Confidence 9999999999999999999999743 566789999999999999999888889999999999999999999997543 3
Q ss_pred cccccccCCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCCCCcceEEEEEEeEecCCCcEEEeeeEEEe
Q 001734 650 LGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLKNGAILRGSLHLID 729 (1019)
Q Consensus 650 l~i~~~~~~g~~vv~~~~~~vv~s~edv~~ll~~g~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~skL~lVD 729 (1019)
+.+..+ ...++++.+++...|.++++++++++.|..+|+++.|.||.+|||||+||+|+|.+.+.++.....|+|.|||
T Consensus 158 lsvheD-K~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~~~~~~gkLyLVD 236 (607)
T KOG0240|consen 158 LSVHED-KNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVEDKRKLSGKLYLVD 236 (607)
T ss_pred ceeecc-cCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccchhhccccEEEEE
Confidence 444433 5678889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccCCcchhhhHHHHHHHhHhHHHHHHHHHHHhcC-CCCccCcCchhhhhhhhccCCccccceeEecCCCCCCHH
Q 001734 730 LAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHK-NPHVPYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYS 808 (1019)
Q Consensus 730 LAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k-~~hIPYRdSKLTrLLqdSLGGnskT~mI~~ISP~~~~~~ 808 (1019)
|||||+++++++.|.-+.|+.+||+||+|||+||+||+.+ ..|||||||||||+|||||||||+|.+|+|++|+..+-.
T Consensus 237 LaGSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n~~ 316 (607)
T KOG0240|consen 237 LAGSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLNEA 316 (607)
T ss_pred cccccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCcccccc
Confidence 9999999999999999999999999999999999999987 789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHhcccccccc
Q 001734 809 ETISTLKFAERVSGVELGAA 828 (1019)
Q Consensus 809 ETlsTL~FA~Rak~I~~~~~ 828 (1019)
||.+||+|+.||+.|++-+.
T Consensus 317 ET~STl~fg~rak~ikN~v~ 336 (607)
T KOG0240|consen 317 ETKSTLRFGNRAKTIKNTVW 336 (607)
T ss_pred ccccchhhccccccccchhh
Confidence 99999999999999986543
No 9
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=8.4e-77 Score=712.23 Aligned_cols=351 Identities=40% Similarity=0.611 Sum_probs=295.6
Q ss_pred CCEEEEeecCCCCCCccCCCccEEEe-CCCCeEEEeC-CCCCCCCCceeeeeceeeCCCCChHHHHhc-hHHHHHHHHcC
Q 001734 494 GNIRVYCRIRPFLPGQSKKQTTIEYI-GENGELVVSN-PLKQGKDNHRLFKFNKVFGPEASQEEVFLD-TRPLIRSVLDG 570 (1019)
Q Consensus 494 GnIrV~~RVRP~~~~e~~~~~~v~~~-~~~~~~~i~~-p~~~~~~~~k~F~FD~VF~~~atQeeVf~~-~~pLV~svLdG 570 (1019)
.+|.|+|||||+.+.+........+. ..+..+.... +..........|.||+||+++++|++||+. ++|+|.+||.|
T Consensus 6 ~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~G 85 (675)
T KOG0242|consen 6 EKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSLPEKSKPEKYEFDRVFGEESTQEDVYERTTKPLLLSVLEG 85 (675)
T ss_pred ceeEEEEEeCCCCccccccCCccceEecCCceeEeeccccccccccccceeeeeecCCCCCHHHHHHhccHHHHHHHhcC
Confidence 58999999999998743322222222 2233322221 111111114789999999999999999988 79999999999
Q ss_pred cceeEEeecccCCCCceeeecCCCCCCCccchhHHHHHHHHHHHhhccCCceEEEEEEEEEEecceeeeccCCCCCCccc
Q 001734 571 YNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRRL 650 (1019)
Q Consensus 571 ~N~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~l 650 (1019)
||+||||||||||||||||.| ...+|||||+++.+||+.+.... ...|.|.|||+|||||.|+|||+++++. +
T Consensus 86 ~N~TVFAYG~TgSGKTyTM~G----~~~~PGii~la~~dif~~I~~~~-~r~f~v~vSYlEIYNE~I~DLL~~~~~~--L 158 (675)
T KOG0242|consen 86 FNATVFAYGQTGSGKTYTMSG----SEDDPGIIPLAMKDIFEKIDKSG-EREFSVRVSYLEIYNERIRDLLNPDGGD--L 158 (675)
T ss_pred cccceeeecCCCCCCceEEec----cCCCCCeeehHHHHHHHHHHhcC-CceeEEEEEEEEEeccccccccCCCCCC--c
Confidence 999999999999999999999 56789999999999999998766 7889999999999999999999988754 4
Q ss_pred ccccccCCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCCCCcceEEEEEEeEecCCCcEEEeeeEEEec
Q 001734 651 GIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLKNGAILRGSLHLIDL 730 (1019)
Q Consensus 651 ~i~~~~~~g~~vv~~~~~~vv~s~edv~~ll~~g~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~skL~lVDL 730 (1019)
.++. +..+++++.+++..++.++++++.+|..|+++|+++.|.+|..|||||+||+|.|.......+. ..++|+||||
T Consensus 159 ~irE-D~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~~-~~s~L~lIDL 236 (675)
T KOG0242|consen 159 RLRE-DSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREASS-RVSKLNLIDL 236 (675)
T ss_pred eEeE-cCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEeccccccc-hhheehhhhh
Confidence 4544 4456889999999999999999999999999999999999999999999999999987665443 6789999999
Q ss_pred CCCccccCCcchhhhHHHHHHHhHhHHHHHHHHHHHhcC--CCCccCcCchhhhhhhhccCCccccceeEecCCCCCCHH
Q 001734 731 AGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHK--NPHVPYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYS 808 (1019)
Q Consensus 731 AGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k--~~hIPYRdSKLTrLLqdSLGGnskT~mI~~ISP~~~~~~ 808 (1019)
|||||+.++++.|.|++||.+||+||.+||+||.+|+.+ ..||||||||||||||++|||||+|+|||||+|+..+|+
T Consensus 237 AGSERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~ 316 (675)
T KOG0242|consen 237 AGSERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYE 316 (675)
T ss_pred hhhhhhhhhhccceeccccchhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHHH
Confidence 999999999999999999999999999999999999976 568999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHhccccccccccC--CCcchHHHHHHHHHHHHHHHHH
Q 001734 809 ETISTLKFAERVSGVELGAARSN--KEGSDVRELMEQVGSLKDIITK 853 (1019)
Q Consensus 809 ETlsTL~FA~Rak~I~~~~~k~~--~~~~~v~eL~~ev~~Lk~~i~~ 853 (1019)
||.+||+||+|++.|++.+..+. .+......++.++..|+..+..
T Consensus 317 eT~nTL~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e~~~ 363 (675)
T KOG0242|consen 317 ETKNTLKFASRAKEITTKAQVNVILSDKALLKYLQREIAELEAELER 363 (675)
T ss_pred HHHHHHHHHHHhhhcccccccceecchhhhhHHHHHHHHHHHHHHHh
Confidence 99999999999999998876542 2223334445555566555544
No 10
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=4.8e-75 Score=656.02 Aligned_cols=316 Identities=38% Similarity=0.584 Sum_probs=279.2
Q ss_pred CCEEEEeecCCCCCCccC--CCccEEEeCCCCeEEEeCCCCC--------CCCCceeeeeceeeCCCCChHHHHhc-hHH
Q 001734 494 GNIRVYCRIRPFLPGQSK--KQTTIEYIGENGELVVSNPLKQ--------GKDNHRLFKFNKVFGPEASQEEVFLD-TRP 562 (1019)
Q Consensus 494 GnIrV~~RVRP~~~~e~~--~~~~v~~~~~~~~~~i~~p~~~--------~~~~~k~F~FD~VF~~~atQeeVf~~-~~p 562 (1019)
.+|+|||||||+.+.|.. ...++.+ .+++.+.+..|... +....+.|.||+||+++++|++||+. +.|
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~v~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p 79 (345)
T cd01368 1 DPVKVYLRVRPLSKDELESEDEGCIEV-INSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALP 79 (345)
T ss_pred CCEEEEEEeCcCCchhhccCCCceEEE-cCCCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHH
Confidence 379999999999987654 2344554 35667777666431 22356789999999999999999998 589
Q ss_pred HHHHHHcCcceeEEeecccCCCCceeeecCCCCCCCccchhHHHHHHHHHHHhhccCCceEEEEEEEEEEecceeeeccC
Q 001734 563 LIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLS 642 (1019)
Q Consensus 563 LV~svLdG~N~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~ 642 (1019)
+|+++++|||+||||||||||||||||+|+ ..++||+||++++||+.+.. |.|.|||+|||||+|+|||+
T Consensus 80 ~v~~~l~G~n~ti~aYGqtGSGKTyTm~G~----~~~~Gli~r~~~~lF~~~~~------~~v~~S~~EIyne~v~DLL~ 149 (345)
T cd01368 80 LVQDLLKGKNSLLFTYGVTNSGKTYTMQGS----PGDGGILPRSLDVIFNSIGG------YSVFVSYVEIYNNYIYDLLE 149 (345)
T ss_pred HHHHHhCCCceEEEEeCCCCCCCeEEecCC----CCCCchHHHHHHHHHHHHHh------eeEEEEEEEEeCCEeEeCCC
Confidence 999999999999999999999999999995 47899999999999998765 99999999999999999998
Q ss_pred CCCC----CcccccccccCCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCCCCcceEEEEEEeEecCC-
Q 001734 643 SDGP----QRRLGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLKN- 717 (1019)
Q Consensus 643 ~~~~----~~~l~i~~~~~~g~~vv~~~~~~vv~s~edv~~ll~~g~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~~- 717 (1019)
+... ...+.++. +..+++++.++++..+.+++|++.+|..|.++|.+++|.+|.+|||||+||+|+|.+.+...
T Consensus 150 ~~~~~~~~~~~l~i~e-d~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~ 228 (345)
T cd01368 150 DSPSSTKKRQSLRLRE-DHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSD 228 (345)
T ss_pred CccccccCCCceEEEE-CCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCcc
Confidence 7653 23445544 33478889999999999999999999999999999999999999999999999998765432
Q ss_pred -------CcEEEeeeEEEecCCCccccCCcchhhhHHHHHHHhHhHHHHHHHHHHHhc------CCCCccCcCchhhhhh
Q 001734 718 -------GAILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAH------KNPHVPYRNSKLTQVL 784 (1019)
Q Consensus 718 -------~~~~~skL~lVDLAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~------k~~hIPYRdSKLTrLL 784 (1019)
+....|+|+|||||||||..++++.|++++|+.+||+||++|++||.+|++ +..|||||+||||+||
T Consensus 229 ~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL 308 (345)
T cd01368 229 GDVDQDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLF 308 (345)
T ss_pred cccccCCCceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHH
Confidence 456789999999999999999999999999999999999999999999986 5689999999999999
Q ss_pred hhccCCccccceeEecCCCCCCHHHHHHHHHHHhHhc
Q 001734 785 QSSLGGQAKTLMMVQLNPDVDSYSETISTLKFAERVS 821 (1019)
Q Consensus 785 qdSLGGnskT~mI~~ISP~~~~~~ETlsTL~FA~Rak 821 (1019)
||+|||||+|+||+||||+..+++||++||+||.+|+
T Consensus 309 ~~~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 309 QNYFDGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred HHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999974
No 11
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=5.5e-74 Score=650.01 Aligned_cols=328 Identities=40% Similarity=0.618 Sum_probs=288.4
Q ss_pred CCEEEEeecCCCCCCccCCC--ccEEEeCCCCeEEEeCCCCCC--CCCceeeeeceeeCCC-------CChHHHHhc-hH
Q 001734 494 GNIRVYCRIRPFLPGQSKKQ--TTIEYIGENGELVVSNPLKQG--KDNHRLFKFNKVFGPE-------ASQEEVFLD-TR 561 (1019)
Q Consensus 494 GnIrV~~RVRP~~~~e~~~~--~~v~~~~~~~~~~i~~p~~~~--~~~~k~F~FD~VF~~~-------atQeeVf~~-~~ 561 (1019)
++|+|||||||+...|.... ..+.+ .+..+.+.+|.... ....+.|.||+||++. ++|++||+. +.
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~--~~~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~ 78 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQM--PGKVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGR 78 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEE--CCCEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHH
Confidence 68999999999998765433 33333 33677777775311 2345789999999999 999999998 58
Q ss_pred HHHHHHHcCcceeEEeecccCCCCceeeecCCCCCCCccchhHHHHHHHHHHHhhccC-CceEEEEEEEEEEecceeeec
Q 001734 562 PLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKN-SILYEVGVQMVEIYNEQVRDL 640 (1019)
Q Consensus 562 pLV~svLdG~N~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~-~~~~~V~vS~lEIYnE~V~DL 640 (1019)
|+|+++++|||+||||||||||||||||+|+ ..++||+||++++||+.+..... ...|.|.|||+|||||+|+||
T Consensus 79 p~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~----~~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DL 154 (356)
T cd01365 79 ELLDHAFEGYNVCLFAYGQTGSGKSYTMMGY----KEEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDL 154 (356)
T ss_pred HHHHHHhCCCceEEEEecCCCCCCeEEecCC----CCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeC
Confidence 9999999999999999999999999999995 45789999999999998876554 678999999999999999999
Q ss_pred cCCCC-CCcccccccccCCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCCCCcceEEEEEEeEecC---
Q 001734 641 LSSDG-PQRRLGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLK--- 716 (1019)
Q Consensus 641 L~~~~-~~~~l~i~~~~~~g~~vv~~~~~~vv~s~edv~~ll~~g~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~--- 716 (1019)
|++.. ....+.++.. ..+++++.++++..+.+++|++.++..|.++|.+++|.+|..|||||+||+|+|.+.+..
T Consensus 155 L~~~~~~~~~l~i~~~-~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~ 233 (356)
T cd01365 155 LNPKKKNKGNLKVREH-PVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKET 233 (356)
T ss_pred CCCCccCCcCceEEEC-CCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCC
Confidence 99875 2334555443 346678899999999999999999999999999999999999999999999999987654
Q ss_pred -CCcEEEeeeEEEecCCCccccCCcchhhhHHHHHHHhHhHHHHHHHHHHHhcC--------CCCccCcCchhhhhhhhc
Q 001734 717 -NGAILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHK--------NPHVPYRNSKLTQVLQSS 787 (1019)
Q Consensus 717 -~~~~~~skL~lVDLAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k--------~~hIPYRdSKLTrLLqdS 787 (1019)
......|+|+|||||||||..+++..|++++|+.+||+||++|++||.+|+.. +.|||||+||||+|||++
T Consensus 234 ~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~ 313 (356)
T cd01365 234 DLTTEKVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKEN 313 (356)
T ss_pred CCCceEEEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHh
Confidence 34568899999999999999999999999999999999999999999999853 589999999999999999
Q ss_pred cCCccccceeEecCCCCCCHHHHHHHHHHHhHhcccccccc
Q 001734 788 LGGQAKTLMMVQLNPDVDSYSETISTLKFAERVSGVELGAA 828 (1019)
Q Consensus 788 LGGnskT~mI~~ISP~~~~~~ETlsTL~FA~Rak~I~~~~~ 828 (1019)
|||||+|+||+||||...+++||++||+||+|++.|++.|.
T Consensus 314 lgg~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~ 354 (356)
T cd01365 314 LGGNSKTAMIATISPADINYEETLSTLRYADRAKKIVNVAV 354 (356)
T ss_pred cCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccc
Confidence 99999999999999999999999999999999999998764
No 12
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=4.2e-73 Score=641.83 Aligned_cols=334 Identities=41% Similarity=0.624 Sum_probs=292.5
Q ss_pred CCEEEEeecCCCCCCccCC--CccEEEeCCCCeEEEeCCCCCCCCCceeeeeceeeCCCCChHHHHhc-hHHHHHHHHcC
Q 001734 494 GNIRVYCRIRPFLPGQSKK--QTTIEYIGENGELVVSNPLKQGKDNHRLFKFNKVFGPEASQEEVFLD-TRPLIRSVLDG 570 (1019)
Q Consensus 494 GnIrV~~RVRP~~~~e~~~--~~~v~~~~~~~~~~i~~p~~~~~~~~k~F~FD~VF~~~atQeeVf~~-~~pLV~svLdG 570 (1019)
+||+|+|||||+.+.|... ...+.+.+.+.++.+.++.. .....+.|.||+||+++++|++||+. +.|+|+++++|
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~-~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G 80 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGA-DKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMG 80 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCc-ccccceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 6999999999998887543 33444444446666655432 23356789999999999999999988 69999999999
Q ss_pred cceeEEeecccCCCCceeeecCCCC-------CCCccchhHHHHHHHHHHHhhccCCceEEEEEEEEEEecceeeeccCC
Q 001734 571 YNVCIFAYGQTGSGKTYTMSGPCIS-------STEDWGVNYRALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLSS 643 (1019)
Q Consensus 571 ~N~~IfAYGQTGSGKTyTM~G~~~~-------~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~ 643 (1019)
||+||||||||||||||||+|+... ....+|||||++++||+.+... ...|.|.|||+|||||+|+|||++
T Consensus 81 ~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~--~~~~~v~~S~~EIy~e~v~DLL~~ 158 (352)
T cd01364 81 YNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ--NTEYSVKVSYLELYNEELFDLLSS 158 (352)
T ss_pred CeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc--cceeEEEEEEEEeeCCeeeeCCCC
Confidence 9999999999999999999997432 2457899999999999988765 567999999999999999999997
Q ss_pred CC-CCccccccccc-CCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCCCCcceEEEEEEeEecCC---C
Q 001734 644 DG-PQRRLGIWNAT-LPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLKN---G 718 (1019)
Q Consensus 644 ~~-~~~~l~i~~~~-~~g~~vv~~~~~~vv~s~edv~~ll~~g~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~~---~ 718 (1019)
.. ..+.+.+.... ..+++++.++++..+.+++|++.++..|.++|++++|.+|..|||||+||+|+|.+..... .
T Consensus 159 ~~~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~~~~~ 238 (352)
T cd01364 159 ESDLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTISGEE 238 (352)
T ss_pred ccccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCCCCCc
Confidence 65 23445555553 4578899999999999999999999999999999999999999999999999998765432 3
Q ss_pred cEEEeeeEEEecCCCccccCCcchhhhHHHHHHHhHhHHHHHHHHHHHhcCCCCccCcCchhhhhhhhccCCccccceeE
Q 001734 719 AILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKNPHVPYRNSKLTQVLQSSLGGQAKTLMMV 798 (1019)
Q Consensus 719 ~~~~skL~lVDLAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~~hIPYRdSKLTrLLqdSLGGnskT~mI~ 798 (1019)
....|+|+|||||||||..++++.+.+++|+..||+||.+|++||.+|+.++.|||||+||||+||+|+|||||+|+||+
T Consensus 239 ~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~~~vpyR~S~LT~lL~~~Lgg~s~t~~I~ 318 (352)
T cd01364 239 LVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKSPHIPYRESKLTRLLQDSLGGRTKTSIIA 318 (352)
T ss_pred cEEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhcCCCceEEEEE
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHhHhcccccccccc
Q 001734 799 QLNPDVDSYSETISTLKFAERVSGVELGAARS 830 (1019)
Q Consensus 799 ~ISP~~~~~~ETlsTL~FA~Rak~I~~~~~k~ 830 (1019)
||||...+++||++||+||+|+++|++.|..+
T Consensus 319 ~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n 350 (352)
T cd01364 319 TISPASINLEETLSTLEYAHRAKNIKNKPEVN 350 (352)
T ss_pred EeCCCcccHHHHHHHHHHHHHHhhccCccccC
Confidence 99999999999999999999999999888653
No 13
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=2.3e-73 Score=636.99 Aligned_cols=315 Identities=37% Similarity=0.520 Sum_probs=277.1
Q ss_pred CCEEEEeecCCCCCCccCCC-ccEEEeCCCCeEEEeCCCCCC----CCCceeeeeceeeCCCCChHHHHhc-hHHHHHHH
Q 001734 494 GNIRVYCRIRPFLPGQSKKQ-TTIEYIGENGELVVSNPLKQG----KDNHRLFKFNKVFGPEASQEEVFLD-TRPLIRSV 567 (1019)
Q Consensus 494 GnIrV~~RVRP~~~~e~~~~-~~v~~~~~~~~~~i~~p~~~~----~~~~k~F~FD~VF~~~atQeeVf~~-~~pLV~sv 567 (1019)
++|+|||||||+.+.|.... ..+..+..++.+.+..|.... ....+.|.||+||+++++|++||+. +.|+|+++
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~ 80 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPHV 80 (322)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEECCCCEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHHH
Confidence 58999999999998775322 233333444577776553211 1125789999999999999999998 69999999
Q ss_pred HcCcceeEEeecccCCCCceeeecCCCCCCCccchhHHHHHHHHHHHhhccCCceEEEEEEEEEEecceeeeccCCCCCC
Q 001734 568 LDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQ 647 (1019)
Q Consensus 568 LdG~N~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~ 647 (1019)
++|||+||||||||||||||||+|+ ..++||+||++++||+.++... ..|.|++||+|||||+|+|||++.
T Consensus 81 ~~G~n~~i~ayGqtGSGKTyTm~G~----~~~~Glipr~~~~lf~~~~~~~--~~~~v~~S~~EIy~e~v~DLL~~~--- 151 (322)
T cd01367 81 FEGGVATCFAYGQTGSGKTYTMLGD----ENQEGLYALAARDIFRLLAQPN--DDLGVTVSFFEIYGGKLFDLLNDR--- 151 (322)
T ss_pred hCCCceEEEeccCCCCCCceEecCc----CCcCccHHHHHHHHHHHHhccc--cccEEEEEEEeeecCchhhhccCc---
Confidence 9999999999999999999999995 4789999999999999887654 679999999999999999999873
Q ss_pred cccccccccCCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCCCCcceEEEEEEeEecCCCcEEEeeeEE
Q 001734 648 RRLGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLKNGAILRGSLHL 727 (1019)
Q Consensus 648 ~~l~i~~~~~~g~~vv~~~~~~vv~s~edv~~ll~~g~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~skL~l 727 (1019)
+.+.++. +..+++++.++++..+.+++|++.++..|.++|++++|.+|..|||||+||+|+|.+.+. ....|+|+|
T Consensus 152 ~~l~i~~-~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~---~~~~s~l~~ 227 (322)
T cd01367 152 KRLSVLE-DGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL---NKLLGKLSF 227 (322)
T ss_pred cceeEEE-cCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC---CeeEEEEEE
Confidence 3444543 445778899999999999999999999999999999999999999999999999987764 567899999
Q ss_pred EecCCCccccCCc-chhhhHHHHHHHhHhHHHHHHHHHHHhcCCCCccCcCchhhhhhhhccCCccccceeEecCCCCCC
Q 001734 728 IDLAGSERVDRSE-ATGDRLREAQHINKSLSALGDVIFALAHKNPHVPYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDS 806 (1019)
Q Consensus 728 VDLAGSER~~ks~-~~g~rlkEa~~INkSLsaLg~VI~aLa~k~~hIPYRdSKLTrLLqdSLGGnskT~mI~~ISP~~~~ 806 (1019)
||||||||...+. ..+++++|+.+||+||++|++||.+|++++.||||||||||+||||+|||||+|+|||||||...+
T Consensus 228 vDLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~ 307 (322)
T cd01367 228 IDLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNKAHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASS 307 (322)
T ss_pred eecCCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhh
Confidence 9999999987765 568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhc
Q 001734 807 YSETISTLKFAERVS 821 (1019)
Q Consensus 807 ~~ETlsTL~FA~Rak 821 (1019)
++||++||+||+|+|
T Consensus 308 ~~eTl~tL~fa~r~k 322 (322)
T cd01367 308 CEHTLNTLRYADRVK 322 (322)
T ss_pred HHHHHHHHHHHHhhC
Confidence 999999999999986
No 14
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.1e-74 Score=664.76 Aligned_cols=354 Identities=38% Similarity=0.598 Sum_probs=307.4
Q ss_pred cCCEEEEeecCCCCCCccCCC--ccEEEeCCCCeEEEeCCC-CCC---CCCceeeeeceeeCCC-------CChHHHHhc
Q 001734 493 KGNIRVYCRIRPFLPGQSKKQ--TTIEYIGENGELVVSNPL-KQG---KDNHRLFKFNKVFGPE-------ASQEEVFLD 559 (1019)
Q Consensus 493 kGnIrV~~RVRP~~~~e~~~~--~~v~~~~~~~~~~i~~p~-~~~---~~~~k~F~FD~VF~~~-------atQeeVf~~ 559 (1019)
..+|||.|||||++..|.... +.+.+. ....++..|+ ..+ ..+.++|.||++|.+. +.|+.||..
T Consensus 3 ~~kVkVaVRVRP~nrREl~l~tk~vv~vd--~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~ 80 (1714)
T KOG0241|consen 3 DAKVKVAVRVRPMNRRELELSTKCVVEVD--KNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKC 80 (1714)
T ss_pred CcceEEEEEecccchhhhcccccceEEec--cCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHh
Confidence 368999999999998886544 333433 3333343332 211 1467899999999763 789999988
Q ss_pred h-HHHHHHHHcCcceeEEeecccCCCCceeeecCCCCCCCccchhHHHHHHHHHHHhhcc-CCceEEEEEEEEEEeccee
Q 001734 560 T-RPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRK-NSILYEVGVQMVEIYNEQV 637 (1019)
Q Consensus 560 ~-~pLV~svLdG~N~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~-~~~~~~V~vS~lEIYnE~V 637 (1019)
+ .-+|+++|+|||+||||||||||||||||+| ..+++|||||++..||..+.... ....|+|.|||+|||||++
T Consensus 81 lG~~il~naf~GyNaCifaYGQtGsGKsYsmmG----t~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv 156 (1714)
T KOG0241|consen 81 LGEGILENAFQGYNACIFAYGQTGSGKSYSMMG----TAEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKV 156 (1714)
T ss_pred cchHHHHHHhhccceeeEEecccCCCceeEeec----cCCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcch
Confidence 4 7789999999999999999999999999999 46789999999999999877543 5678999999999999999
Q ss_pred eeccCCCCCCcccccccccCCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCCCCcceEEEEEEeE--ec
Q 001734 638 RDLLSSDGPQRRLGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGT--DL 715 (1019)
Q Consensus 638 ~DLL~~~~~~~~l~i~~~~~~g~~vv~~~~~~vv~s~edv~~ll~~g~~nR~~~sT~~N~~SSRSH~IftI~V~~~--~~ 715 (1019)
||||.|..+...+.++.... -++++++++...|.+++|+-.+|..|+++|++++|+||..|||||+||.|.|.+. |.
T Consensus 157 ~DLLdPk~ssqtlkVrehsv-lGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~ 235 (1714)
T KOG0241|consen 157 RDLLDPKGSSQTLKVREHSV-LGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDL 235 (1714)
T ss_pred hhhhCCCCCcceeEEeeccc-ccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEecc
Confidence 99999999887777766543 5678899999999999999999999999999999999999999999999999875 55
Q ss_pred CCCc--EEEeeeEEEecCCCccccCCcchhhhHHHHHHHhHhHHHHHHHHHHHhcC------CCCccCcCchhhhhhhhc
Q 001734 716 KNGA--ILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHK------NPHVPYRNSKLTQVLQSS 787 (1019)
Q Consensus 716 ~~~~--~~~skL~lVDLAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k------~~hIPYRdSKLTrLLqdS 787 (1019)
.+|. ...|+|.|||||||||+.++++.|+|++|+.+||+||++||.||+||+.+ .++||||||.||+||||+
T Consensus 236 ktg~SgeKvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~ 315 (1714)
T KOG0241|consen 236 KTGHSGEKVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDN 315 (1714)
T ss_pred ccCcchhheeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhh
Confidence 5543 35689999999999999999999999999999999999999999999952 469999999999999999
Q ss_pred cCCccccceeEecCCCCCCHHHHHHHHHHHhHhccccccccccCCC-cchHHHHHHHHHHHHHHHHH
Q 001734 788 LGGQAKTLMMVQLNPDVDSYSETISTLKFAERVSGVELGAARSNKE-GSDVRELMEQVGSLKDIITK 853 (1019)
Q Consensus 788 LGGnskT~mI~~ISP~~~~~~ETlsTL~FA~Rak~I~~~~~k~~~~-~~~v~eL~~ev~~Lk~~i~~ 853 (1019)
|||||+|+||+||||+.++|+|||+|||||.||+.|.+.+..+.++ .+.+++|.+++..|+..+.+
T Consensus 316 LGGNsrTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedpnarvirElReEve~lr~qL~~ 382 (1714)
T KOG0241|consen 316 LGGNSRTVMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARVIRELREEVEKLREQLEQ 382 (1714)
T ss_pred cCCCceeEEEEEecccccchHHHHHHHHHHHHHHHhhccccccCCchHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999988776554 45689999999999988876
No 15
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=1.1e-72 Score=634.21 Aligned_cols=326 Identities=42% Similarity=0.684 Sum_probs=290.1
Q ss_pred CCEEEEeecCCCCCCccCC--CccEEEeCCCCeEEEeCCCCCCCCCceeeeeceeeCCCCChHHHHhc-hHHHHHHHHcC
Q 001734 494 GNIRVYCRIRPFLPGQSKK--QTTIEYIGENGELVVSNPLKQGKDNHRLFKFNKVFGPEASQEEVFLD-TRPLIRSVLDG 570 (1019)
Q Consensus 494 GnIrV~~RVRP~~~~e~~~--~~~v~~~~~~~~~~i~~p~~~~~~~~k~F~FD~VF~~~atQeeVf~~-~~pLV~svLdG 570 (1019)
.||+|+|||||+++.|... ...+...+.++.+.+.+|........+.|.||+||+++++|++||+. +.|+|+++++|
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G 80 (333)
T cd01371 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVLEG 80 (333)
T ss_pred CCeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcccccCCCceeeeccccCCCccHHHHHHHHHHHHHHHHhCC
Confidence 3899999999999877543 34556666778888887765444567899999999999999999988 69999999999
Q ss_pred cceeEEeecccCCCCceeeecCCCCCCCccchhHHHHHHHHHHHhhccCCceEEEEEEEEEEecceeeeccCCCCCCccc
Q 001734 571 YNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRRL 650 (1019)
Q Consensus 571 ~N~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~l 650 (1019)
||+||||||||||||||||+|+.. ...++|||||++++||+.+....+ ..|.|.|||+|||||+|+|||++... ..+
T Consensus 81 ~n~~i~ayG~tgSGKTyTm~G~~~-~~~~~Glipr~~~~Lf~~~~~~~~-~~~~v~~S~~Eiy~e~v~DLL~~~~~-~~l 157 (333)
T cd01371 81 YNGTIFAYGQTGTGKTFTMEGVRE-PPELRGIIPNSFAHIFGHIAKAEN-VQFLVRVSYLEIYNEEVRDLLGKDQK-KKL 157 (333)
T ss_pred CceeEEecCCCCCCCcEeecCCCC-cccccchHHHHHHHHHHHHhhccC-ccEEEEEEEEEeeCCeeeeCCCCCCC-Cce
Confidence 999999999999999999999642 456899999999999998876544 78999999999999999999987642 345
Q ss_pred ccccccCCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCCCCcceEEEEEEeEecC---CCcEEEeeeEE
Q 001734 651 GIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLK---NGAILRGSLHL 727 (1019)
Q Consensus 651 ~i~~~~~~g~~vv~~~~~~vv~s~edv~~ll~~g~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~---~~~~~~skL~l 727 (1019)
.++... .+++++.+++++.+.+++|+..++..|.++|.+++|.+|..|||||+||+|+|.+.+.. .+....|+|+|
T Consensus 158 ~i~~~~-~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~L~~ 236 (333)
T cd01371 158 ELKERP-DRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENHIRVGKLNL 236 (333)
T ss_pred eEEEcC-CCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCCCCCcEEEEEEEE
Confidence 554443 45677889999999999999999999999999999999999999999999999987764 34567899999
Q ss_pred EecCCCccccCCcchhhhHHHHHHHhHhHHHHHHHHHHHhcCCC-CccCcCchhhhhhhhccCCccccceeEecCCCCCC
Q 001734 728 IDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKNP-HVPYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDS 806 (1019)
Q Consensus 728 VDLAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~~-hIPYRdSKLTrLLqdSLGGnskT~mI~~ISP~~~~ 806 (1019)
||||||||..+++..|.+++|+..||+||.+|++||.+|+.+.+ |||||+||||+||+++|||||+|+||+||+|...+
T Consensus 237 VDLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~ 316 (333)
T cd01371 237 VDLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYN 316 (333)
T ss_pred EECCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCcccc
Confidence 99999999999999999999999999999999999999998775 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhccc
Q 001734 807 YSETISTLKFAERVSGV 823 (1019)
Q Consensus 807 ~~ETlsTL~FA~Rak~I 823 (1019)
++||++||+||+|++.|
T Consensus 317 ~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 317 YDETLSTLRYANRAKNI 333 (333)
T ss_pred HHHHHHHHHHHHHhhcC
Confidence 99999999999999976
No 16
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=1.1e-72 Score=630.55 Aligned_cols=314 Identities=36% Similarity=0.581 Sum_probs=281.3
Q ss_pred CEEEEeecCCCCCCccCCCccEEEeCCC----CeEEEeCCCCCCCCCceeeeeceeeCCCCChHHHHhc-hHHHHHHHHc
Q 001734 495 NIRVYCRIRPFLPGQSKKQTTIEYIGEN----GELVVSNPLKQGKDNHRLFKFNKVFGPEASQEEVFLD-TRPLIRSVLD 569 (1019)
Q Consensus 495 nIrV~~RVRP~~~~e~~~~~~v~~~~~~----~~~~i~~p~~~~~~~~k~F~FD~VF~~~atQeeVf~~-~~pLV~svLd 569 (1019)
||+|||||||+.+.|.....++...+.+ ..+.+.+|... ...+.|.||+||+++++|++||+. +.|+|+++++
T Consensus 1 ~i~V~vRvRP~~~~e~~~~~~v~~~~~~~~~~~~v~~~~~~~~--~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~ 78 (319)
T cd01376 1 NVRVVVRVRPFLDCEEDSSSCVRGIDSDQGQAKSVEIENPRNR--GETKKYQFDAFYGTECTQEDIFSREVKPIVPHLLS 78 (319)
T ss_pred CcEEEEEeCcCCccccCCCceEEEeCCCCCcceEEEEeCCCCC--CCccEEecCeEECCCCCHHHHHHHHHHHHHHHHhC
Confidence 6999999999998886666666665443 36777776422 245789999999999999999998 6999999999
Q ss_pred CcceeEEeecccCCCCceeeecCCCCCCCccchhHHHHHHHHHHHhhccCCceEEEEEEEEEEecceeeeccCCCCCCcc
Q 001734 570 GYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRR 649 (1019)
Q Consensus 570 G~N~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~ 649 (1019)
|||+||||||||||||||||+|+ ..++||+||++++||+.++.. .+.|.|.+||+|||||.|+|||++... .
T Consensus 79 G~n~~i~ayG~tgSGKTyTm~G~----~~~~Glipr~~~~Lf~~~~~~--~~~~~v~~S~~EIy~e~v~DLL~~~~~--~ 150 (319)
T cd01376 79 GQNATVFAYGSTGAGKTHTMLGD----PNEPGLIPRTLSDLLRMGRKQ--AWTGAFSMSYYEIYNEKVYDLLEPAKK--E 150 (319)
T ss_pred CCceEEEEECCCCCCCcEEEeCC----cCccchHHHHHHHHHHHHhhc--cccceEEEEEEEEECCEeeEccCCCCC--C
Confidence 99999999999999999999995 458899999999999987654 367999999999999999999987532 3
Q ss_pred cccccccCCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCCCCcceEEEEEEeEecCCCcEEEeeeEEEe
Q 001734 650 LGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLKNGAILRGSLHLID 729 (1019)
Q Consensus 650 l~i~~~~~~g~~vv~~~~~~vv~s~edv~~ll~~g~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~skL~lVD 729 (1019)
+.++. +..+++++.+++...+.+++|+..++..|.++|.+++|.+|..|||||+||+|+|.+.+. +....|+|+|||
T Consensus 151 l~i~~-~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~--~~~~~s~l~~VD 227 (319)
T cd01376 151 LPIRE-DKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPAS--NIQLEGKLNLID 227 (319)
T ss_pred ceEEE-cCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECC--CceEEEEEEEEE
Confidence 44443 345778889999999999999999999999999999999999999999999999987754 346789999999
Q ss_pred cCCCccccCCcchhhhHHHHHHHhHhHHHHHHHHHHHhcCCCCccCcCchhhhhhhhccCCccccceeEecCCCCCCHHH
Q 001734 730 LAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKNPHVPYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYSE 809 (1019)
Q Consensus 730 LAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~~hIPYRdSKLTrLLqdSLGGnskT~mI~~ISP~~~~~~E 809 (1019)
||||||..+++..|.+++|+.+||+||++|++||.+|+.+..|||||+|+||+||+|+|||||+|+||+||||...+++|
T Consensus 228 LAGsE~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~e 307 (319)
T cd01376 228 LAGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKGLPRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQD 307 (319)
T ss_pred CCCCCcccccCCccchhhhhhhhhhhHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhc
Q 001734 810 TISTLKFAERVS 821 (1019)
Q Consensus 810 TlsTL~FA~Rak 821 (1019)
|++||+||+|+|
T Consensus 308 Tl~TL~fa~r~~ 319 (319)
T cd01376 308 TLSTLNFASRSK 319 (319)
T ss_pred HHHHHHHHHhhC
Confidence 999999999986
No 17
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=3.2e-72 Score=629.09 Aligned_cols=325 Identities=53% Similarity=0.862 Sum_probs=292.9
Q ss_pred cCCEEEEeecCCCCCCccCC-CccEEEeCCC-CeEEEeCCCCCCCCCceeeeeceeeCCCCChHHHHhchHHHHHHHHcC
Q 001734 493 KGNIRVYCRIRPFLPGQSKK-QTTIEYIGEN-GELVVSNPLKQGKDNHRLFKFNKVFGPEASQEEVFLDTRPLIRSVLDG 570 (1019)
Q Consensus 493 kGnIrV~~RVRP~~~~e~~~-~~~v~~~~~~-~~~~i~~p~~~~~~~~k~F~FD~VF~~~atQeeVf~~~~pLV~svLdG 570 (1019)
||+|+|||||||+.+.+... ...+.+.+.+ ..+.+.++ ....+.|.||+||+++++|++||+.+.|+|+++++|
T Consensus 1 ~~~i~V~vRirP~~~~e~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~f~fD~vf~~~~~q~~v~~~v~p~v~~~~~G 76 (329)
T cd01366 1 KGNIRVFCRVRPLLPSESTEYSSVISFPDEDGGTIELSKG----TGKKKSFSFDRVFDPDASQEDVFEEVSPLVQSALDG 76 (329)
T ss_pred CCCEEEEEEcCcCCccccCCCccEEEEcCCCceEEEEeCC----CCCceEEecCEEECCCCCHHHHHHHHHHHHHHHhCC
Confidence 69999999999999887533 3344554443 55555543 234578999999999999999999899999999999
Q ss_pred cceeEEeecccCCCCceeeecCCCCCCCccchhHHHHHHHHHHHhhccC-CceEEEEEEEEEEecceeeeccCCCC-CCc
Q 001734 571 YNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKN-SILYEVGVQMVEIYNEQVRDLLSSDG-PQR 648 (1019)
Q Consensus 571 ~N~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~-~~~~~V~vS~lEIYnE~V~DLL~~~~-~~~ 648 (1019)
+|+||||||||||||||||+|+ ..++||+||++++||..++.... .+.|.|.+||+|||||+|+|||++.. ...
T Consensus 77 ~~~~i~ayG~tgSGKT~tl~G~----~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~ 152 (329)
T cd01366 77 YNVCIFAYGQTGSGKTYTMEGP----PENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPAPKK 152 (329)
T ss_pred CceEEEEeCCCCCCCcEEecCC----CCCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcCCCC
Confidence 9999999999999999999995 47889999999999998877654 78899999999999999999999763 233
Q ss_pred ccccccccCCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCCCCcceEEEEEEeEecCCCcEEEeeeEEE
Q 001734 649 RLGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLKNGAILRGSLHLI 728 (1019)
Q Consensus 649 ~l~i~~~~~~g~~vv~~~~~~vv~s~edv~~ll~~g~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~skL~lV 728 (1019)
.+.++.+. .+++++.+++...+.+++|+..++..|.++|.+++|.+|..|||||+||+|+|.+.+...+....|+|+||
T Consensus 153 ~l~i~~~~-~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~s~l~~V 231 (329)
T cd01366 153 KLEIKHDS-KGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQTGEQTRGKLNLV 231 (329)
T ss_pred ceEEEECC-CCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCCCCcEEEEEEEEE
Confidence 45555444 67888999999999999999999999999999999999999999999999999998888888899999999
Q ss_pred ecCCCccccCCcchhhhHHHHHHHhHhHHHHHHHHHHHhcCCCCccCcCchhhhhhhhccCCccccceeEecCCCCCCHH
Q 001734 729 DLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKNPHVPYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYS 808 (1019)
Q Consensus 729 DLAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~~hIPYRdSKLTrLLqdSLGGnskT~mI~~ISP~~~~~~ 808 (1019)
||||||+..+.++.+.+++|+..||+||.+|++||.+|+.+..|||||+||||+||+++|||+++|+||+||||...+++
T Consensus 232 DLaGsE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~ 311 (329)
T cd01366 232 DLAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRSKDSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLS 311 (329)
T ss_pred ECCCCcccccccccchhhHhHhhhhhHHHHHHHHHHHHhcCCCcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHhcccccc
Q 001734 809 ETISTLKFAERVSGVELG 826 (1019)
Q Consensus 809 ETlsTL~FA~Rak~I~~~ 826 (1019)
||++||+||+|++.|++|
T Consensus 312 etl~tL~~a~~~~~i~~~ 329 (329)
T cd01366 312 ETLCSLRFASRVRSVELG 329 (329)
T ss_pred HHHHHHHHHHHhhcccCC
Confidence 999999999999999864
No 18
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=2e-72 Score=633.55 Aligned_cols=321 Identities=39% Similarity=0.663 Sum_probs=286.6
Q ss_pred CEEEEeecCCCCCCccCC--CccEEEeCCCCeEEEeCCCCCCCCCceeeeeceeeCCCCChHHHHhc-hHHHHHHHHcCc
Q 001734 495 NIRVYCRIRPFLPGQSKK--QTTIEYIGENGELVVSNPLKQGKDNHRLFKFNKVFGPEASQEEVFLD-TRPLIRSVLDGY 571 (1019)
Q Consensus 495 nIrV~~RVRP~~~~e~~~--~~~v~~~~~~~~~~i~~p~~~~~~~~k~F~FD~VF~~~atQeeVf~~-~~pLV~svLdG~ 571 (1019)
+|+|||||||+.+.|... ..++.+.+.+..+++.+ .+.|.||+||+++++|++||+. +.|+|+++++||
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~--------~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~ 73 (341)
T cd01372 2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGT--------DKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGY 73 (341)
T ss_pred CeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEecC--------CcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 699999999999877543 34555666555655533 4689999999999999999998 589999999999
Q ss_pred ceeEEeecccCCCCceeeecCCC--CCCCccchhHHHHHHHHHHHhhccCCceEEEEEEEEEEecceeeeccCCCC-CCc
Q 001734 572 NVCIFAYGQTGSGKTYTMSGPCI--SSTEDWGVNYRALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLSSDG-PQR 648 (1019)
Q Consensus 572 N~~IfAYGQTGSGKTyTM~G~~~--~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~-~~~ 648 (1019)
|+||||||||||||||||+|+.. ....++|||||++++||..++.......|.|.|||+|||||+|+|||.+.. ...
T Consensus 74 n~~i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~ 153 (341)
T cd01372 74 NATVLAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPSTSEKS 153 (341)
T ss_pred ccceeeecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcccCCC
Confidence 99999999999999999999743 236789999999999999998877778999999999999999999998764 223
Q ss_pred ccccccccCCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCCCCcceEEEEEEeEecC----------CC
Q 001734 649 RLGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLK----------NG 718 (1019)
Q Consensus 649 ~l~i~~~~~~g~~vv~~~~~~vv~s~edv~~ll~~g~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~----------~~ 718 (1019)
.+.++ ++..+++++.++++..+.+++|++.+|..|.++|++++|.+|..|||||+||+|+|.+.+.. ..
T Consensus 154 ~l~i~-e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~ 232 (341)
T cd01372 154 PIQIR-EDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKN 232 (341)
T ss_pred CceEE-ECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccccccCCC
Confidence 44444 34458889999999999999999999999999999999999999999999999999988763 34
Q ss_pred cEEEeeeEEEecCCCccccCCcchhhhHHHHHHHhHhHHHHHHHHHHHhcCC---CCccCcCchhhhhhhhccCCccccc
Q 001734 719 AILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKN---PHVPYRNSKLTQVLQSSLGGQAKTL 795 (1019)
Q Consensus 719 ~~~~skL~lVDLAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~---~hIPYRdSKLTrLLqdSLGGnskT~ 795 (1019)
....|+|+||||||||+..++++.|++++|+..||+||.+|++||.+|+.++ .|||||+||||+||+|+||||++|+
T Consensus 233 ~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg~s~t~ 312 (341)
T cd01372 233 STLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSLGGNSHTL 312 (341)
T ss_pred ceeeEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhcCCCceEE
Confidence 5678999999999999999999999999999999999999999999999876 7999999999999999999999999
Q ss_pred eeEecCCCCCCHHHHHHHHHHHhHhcccc
Q 001734 796 MMVQLNPDVDSYSETISTLKFAERVSGVE 824 (1019)
Q Consensus 796 mI~~ISP~~~~~~ETlsTL~FA~Rak~I~ 824 (1019)
||+||||...+++||++||+||+|+++|+
T Consensus 313 ~I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 313 MIACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred EEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999985
No 19
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=3.4e-72 Score=628.05 Aligned_cols=320 Identities=43% Similarity=0.681 Sum_probs=287.4
Q ss_pred CCEEEEeecCCCCCCccC--CCccEEEeCCCCeEEEeCCCCCCCCCceeeeeceeeCCCCChHHHHhc-hHHHHHHHHcC
Q 001734 494 GNIRVYCRIRPFLPGQSK--KQTTIEYIGENGELVVSNPLKQGKDNHRLFKFNKVFGPEASQEEVFLD-TRPLIRSVLDG 570 (1019)
Q Consensus 494 GnIrV~~RVRP~~~~e~~--~~~~v~~~~~~~~~~i~~p~~~~~~~~k~F~FD~VF~~~atQeeVf~~-~~pLV~svLdG 570 (1019)
.+|+|+|||||+.+.|.. ...++.+ .++..+.+.++ ...+.|.||+||+++++|++||+. +.|+|+++++|
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~-~~~~~v~~~~~-----~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G 75 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKF-PGEDTVSIAGS-----DDGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNG 75 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEE-cCCCEEEecCC-----CCceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcC
Confidence 489999999999887732 2334444 44456776654 245789999999999999999988 59999999999
Q ss_pred cceeEEeecccCCCCceeeecCCCCCCCccchhHHHHHHHHHHHhhccCCceEEEEEEEEEEecceeeeccCCCCCCccc
Q 001734 571 YNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRRL 650 (1019)
Q Consensus 571 ~N~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~l 650 (1019)
||+||||||||||||||||+|+.. ...++||+||++++||+.+........|.|.+||+|||||.|+|||++... .+
T Consensus 76 ~n~~i~ayG~tgSGKT~Tm~G~~~-~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~--~l 152 (325)
T cd01369 76 YNGTIFAYGQTGSGKTYTMEGPPG-DPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVSKD--NL 152 (325)
T ss_pred ccceEEEeCCCCCCceEEecCCCC-ccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCccC--Cc
Confidence 999999999999999999999643 245889999999999999888777788999999999999999999987643 34
Q ss_pred ccccccCCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCCCCcceEEEEEEeEecCCCcEEEeeeEEEec
Q 001734 651 GIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLKNGAILRGSLHLIDL 730 (1019)
Q Consensus 651 ~i~~~~~~g~~vv~~~~~~vv~s~edv~~ll~~g~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~skL~lVDL 730 (1019)
.++. +..+++++.++++..+.+++|++.++..|.++|++++|.+|..|||||+||+|+|.+.+...+....|+|+||||
T Consensus 153 ~i~~-~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~s~l~~VDL 231 (325)
T cd01369 153 QVHE-DKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVETGSKKRGKLFLVDL 231 (325)
T ss_pred eEEE-cCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecCCCCEEEEEEEEEEC
Confidence 4443 345778889999999999999999999999999999999999999999999999999888888889999999999
Q ss_pred CCCccccCCcchhhhHHHHHHHhHhHHHHHHHHHHHhcCC-CCccCcCchhhhhhhhccCCccccceeEecCCCCCCHHH
Q 001734 731 AGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKN-PHVPYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYSE 809 (1019)
Q Consensus 731 AGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~-~hIPYRdSKLTrLLqdSLGGnskT~mI~~ISP~~~~~~E 809 (1019)
|||||..++++.|.+++|+..||+||++|++||.+|++++ .|||||+|+||+||+|+|||+|+|+||+||||...+++|
T Consensus 232 AGsE~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~e 311 (325)
T cd01369 232 AGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESE 311 (325)
T ss_pred CCCCcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHHH
Confidence 9999999999999999999999999999999999999887 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhccc
Q 001734 810 TISTLKFAERVSGV 823 (1019)
Q Consensus 810 TlsTL~FA~Rak~I 823 (1019)
|++||+||+|+++|
T Consensus 312 Tl~TL~~a~r~~~i 325 (325)
T cd01369 312 TLSTLRFGARAKTI 325 (325)
T ss_pred HHHHHHHHHHhhcC
Confidence 99999999999976
No 20
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=4.9e-72 Score=625.82 Aligned_cols=315 Identities=39% Similarity=0.631 Sum_probs=282.3
Q ss_pred CEEEEeecCCCCCCccCCCccEEEeCCCCeEEEeCCCCCCCCCceeeeeceeeCCCCChHHHHhc-hHHHHHHHHcCcce
Q 001734 495 NIRVYCRIRPFLPGQSKKQTTIEYIGENGELVVSNPLKQGKDNHRLFKFNKVFGPEASQEEVFLD-TRPLIRSVLDGYNV 573 (1019)
Q Consensus 495 nIrV~~RVRP~~~~e~~~~~~v~~~~~~~~~~i~~p~~~~~~~~k~F~FD~VF~~~atQeeVf~~-~~pLV~svLdG~N~ 573 (1019)
+|+|||||||+.+.|......+..+.+++.+++.+| ...+.|.||+||+++++|++||+. +.|+|+++++|||+
T Consensus 1 ~V~V~vRvRP~~~~e~~~~~~~~~~~~~~~v~~~~~-----~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~ 75 (321)
T cd01374 1 KIKVSVRVRPLNPRESDNEQVAWSIDNDNTISLEES-----TPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNG 75 (321)
T ss_pred CeEEEEEcCcCCcccccCCcceEEECCCCEEEEcCC-----CCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCce
Confidence 699999999999887644444444445557766654 245789999999999999999988 59999999999999
Q ss_pred eEEeecccCCCCceeeecCCCCCCCccchhHHHHHHHHHHHhhccCCceEEEEEEEEEEecceeeeccCCCCCCcccccc
Q 001734 574 CIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRRLGIW 653 (1019)
Q Consensus 574 ~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~l~i~ 653 (1019)
||||||||||||||||+|+ ..++||+||++++||..+.... ...|.|++||+|||||+|+|||++.. ..+.+.
T Consensus 76 ~i~ayG~tgSGKT~T~~G~----~~~~Gli~r~~~~lf~~~~~~~-~~~~~v~~S~~Eiy~e~v~DLL~~~~--~~l~i~ 148 (321)
T cd01374 76 TIFAYGQTSSGKTFTMSGD----EQEPGIIPLAVRDIFQRIQDTP-DREFLLRVSYLEIYNEKIKDLLSPSP--QELRIR 148 (321)
T ss_pred eEEeecCCCCCCceeccCC----CCCCchHHHHHHHHHHHHhccc-CceEEEEEEEEEEEcCEeEEccCCCC--CCceEE
Confidence 9999999999999999995 4788999999999999887654 56899999999999999999998875 334454
Q ss_pred cccCCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCCCCcceEEEEEEeEecCC---CcEEEeeeEEEec
Q 001734 654 NATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLKN---GAILRGSLHLIDL 730 (1019)
Q Consensus 654 ~~~~~g~~vv~~~~~~vv~s~edv~~ll~~g~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~~---~~~~~skL~lVDL 730 (1019)
.+. .+++++.++++..+.+++|+..+|..|.++|++++|.+|.+|||||+||+|+|.+.+... +....|+|+||||
T Consensus 149 ~~~-~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~l~~vDL 227 (321)
T cd01374 149 EDP-NKGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTVRVSTLNLIDL 227 (321)
T ss_pred ECC-CCCEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCCCCCcEEEEEEEEEEC
Confidence 433 467889999999999999999999999999999999999999999999999999887655 6678899999999
Q ss_pred CCCccccCCcchhhhHHHHHHHhHhHHHHHHHHHHHhcCC--CCccCcCchhhhhhhhccCCccccceeEecCCCCCCHH
Q 001734 731 AGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKN--PHVPYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYS 808 (1019)
Q Consensus 731 AGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~--~hIPYRdSKLTrLLqdSLGGnskT~mI~~ISP~~~~~~ 808 (1019)
|||||..+.+ .+.+++|+.+||+||.+|++||.+|+.++ .|||||+||||+||+++|||||+|+|||||||...+++
T Consensus 228 AGsE~~~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~ 306 (321)
T cd01374 228 AGSERASQTG-AGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVE 306 (321)
T ss_pred CCCCccccCC-CCccccccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHH
Confidence 9999999888 89999999999999999999999999885 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHhccc
Q 001734 809 ETISTLKFAERVSGV 823 (1019)
Q Consensus 809 ETlsTL~FA~Rak~I 823 (1019)
||++||+||+|++.|
T Consensus 307 eTl~TL~~a~r~~~i 321 (321)
T cd01374 307 ETLNTLKFASRAKKV 321 (321)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999876
No 21
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=2.5e-71 Score=623.37 Aligned_cols=320 Identities=42% Similarity=0.618 Sum_probs=279.3
Q ss_pred CEEEEeecCCCCCCccCCCccEEEeCCCCeEEEeCCCCC------CCCCceeeeeceeeCCCCChHHHHhc-hHHHHHHH
Q 001734 495 NIRVYCRIRPFLPGQSKKQTTIEYIGENGELVVSNPLKQ------GKDNHRLFKFNKVFGPEASQEEVFLD-TRPLIRSV 567 (1019)
Q Consensus 495 nIrV~~RVRP~~~~e~~~~~~v~~~~~~~~~~i~~p~~~------~~~~~k~F~FD~VF~~~atQeeVf~~-~~pLV~sv 567 (1019)
.|+|+|||||+...+.. .+.+..++..+.+..|... .....+.|.||+||++ ++|++||+. +.|+|+++
T Consensus 1 ~i~V~vRvRP~~~~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~~ 76 (334)
T cd01375 1 TIQVFVRVRPTPTKQGS---SIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVDSA 76 (334)
T ss_pred CeEEEEECCCCCCCCCc---cEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHHHH
Confidence 48999999999874332 3455555555566554321 1123467999999999 999999998 58999999
Q ss_pred HcCcceeEEeecccCCCCceeeecCCCCCCCccchhHHHHHHHHHHHhhccCCceEEEEEEEEEEecceeeeccCCCC--
Q 001734 568 LDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLSSDG-- 645 (1019)
Q Consensus 568 LdG~N~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~-- 645 (1019)
++|||+||||||||||||||||+|+.. +..++||+||++++||..++... ...|.|.+||+|||||+|+|||++..
T Consensus 77 ~~G~n~~i~ayG~tgSGKTyTm~G~~~-~~~~~Glipr~~~~lf~~~~~~~-~~~~~v~~S~~Eiy~e~v~DLL~~~~~~ 154 (334)
T cd01375 77 LDGYNGTIFAYGQTGAGKTFTMTGGTE-SYKDRGLIPRALEQVFREVAMRA-TKTYTVHVSYLEIYNEQLYDLLGDTPEA 154 (334)
T ss_pred hCCCccceeeecCCCCCCeEEccCCCC-cccCCchHHHHHHHHHHHHHhcc-CcceEEEEEEEEEECCEeecCCCCCccc
Confidence 999999999999999999999999743 45678999999999999887654 56799999999999999999999874
Q ss_pred --CCcccccccccCCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCCCCcceEEEEEEeEe--cCCCcEE
Q 001734 646 --PQRRLGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTD--LKNGAIL 721 (1019)
Q Consensus 646 --~~~~l~i~~~~~~g~~vv~~~~~~vv~s~edv~~ll~~g~~nR~~~sT~~N~~SSRSH~IftI~V~~~~--~~~~~~~ 721 (1019)
..+.+.+.. +..+++++.++++..+.+++|++.++..|.++|.+++|.+|..|||||+||+|+|.+.+ ..++...
T Consensus 155 ~~~~~~l~i~e-~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~~~~~~~ 233 (334)
T cd01375 155 LESLPAVTILE-DSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREAGSEVVR 233 (334)
T ss_pred cccCCceEEEE-cCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCCCCCceE
Confidence 223444443 33577889999999999999999999999999999999999999999999999999873 3445677
Q ss_pred EeeeEEEecCCCccccCCcchhhhHHHHHHHhHhHHHHHHHHHHHhcCC-CCccCcCchhhhhhhhccCCccccceeEec
Q 001734 722 RGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKN-PHVPYRNSKLTQVLQSSLGGQAKTLMMVQL 800 (1019)
Q Consensus 722 ~skL~lVDLAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~-~hIPYRdSKLTrLLqdSLGGnskT~mI~~I 800 (1019)
.|+|+|||||||||..+++..+.+++|+..||+||++|++||.+|+.++ .|||||+||||+||+|+|||||+|+||+||
T Consensus 234 ~s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~v 313 (334)
T cd01375 234 LSKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLATI 313 (334)
T ss_pred EEEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEe
Confidence 8999999999999999999999999999999999999999999999988 999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhHhc
Q 001734 801 NPDVDSYSETISTLKFAERVS 821 (1019)
Q Consensus 801 SP~~~~~~ETlsTL~FA~Rak 821 (1019)
||+..+++||++||+||+|++
T Consensus 314 sp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 314 WVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred CCchhhHHHHHHHHHHHHhcC
Confidence 999999999999999999984
No 22
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=6.4e-68 Score=593.23 Aligned_cols=322 Identities=48% Similarity=0.755 Sum_probs=287.0
Q ss_pred CEEEEeecCCCCCCccCCCccEEEeCCCCeEEEeCCCCCCCCCceeeeeceeeCCCCChHHHHhc-hHHHHHHHHcCcce
Q 001734 495 NIRVYCRIRPFLPGQSKKQTTIEYIGENGELVVSNPLKQGKDNHRLFKFNKVFGPEASQEEVFLD-TRPLIRSVLDGYNV 573 (1019)
Q Consensus 495 nIrV~~RVRP~~~~e~~~~~~v~~~~~~~~~~i~~p~~~~~~~~k~F~FD~VF~~~atQeeVf~~-~~pLV~svLdG~N~ 573 (1019)
+|+|||||||+.+.+......+..+.+++.+.+.+|........+.|.||+||+++++|++||+. +.|+|+++++|+|+
T Consensus 1 ~i~V~vRvrP~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~~~ 80 (328)
T cd00106 1 NIRVVVRIRPLNGRESKSEESCITVDDNKTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYNG 80 (328)
T ss_pred CeEEEEEcCCCCcccccCCCcEEEECCCCEEEEecCccccCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCCce
Confidence 69999999999877643334444444557788877654334456899999999999999999998 58999999999999
Q ss_pred eEEeecccCCCCceeeecCCCCCCCccchhHHHHHHHHHHHhhccC-CceEEEEEEEEEEecceeeeccCCCCCCccccc
Q 001734 574 CIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKN-SILYEVGVQMVEIYNEQVRDLLSSDGPQRRLGI 652 (1019)
Q Consensus 574 ~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~-~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~l~i 652 (1019)
||||||||||||||||+|+ ..++||+||++++||..+..... ...|.|.+||+|||+|+|+|||++......+.+
T Consensus 81 ~i~~yG~tgSGKT~tl~G~----~~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~l~i 156 (328)
T cd00106 81 TIFAYGQTGSGKTYTMFGS----PKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPLSL 156 (328)
T ss_pred eEEEecCCCCCCeEEecCC----CCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCCCCCCcEE
Confidence 9999999999999999995 47889999999999998876543 567999999999999999999998643445555
Q ss_pred ccccCCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCCCCcceEEEEEEeEecCCCc--EEEeeeEEEec
Q 001734 653 WNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLKNGA--ILRGSLHLIDL 730 (1019)
Q Consensus 653 ~~~~~~g~~vv~~~~~~vv~s~edv~~ll~~g~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~--~~~skL~lVDL 730 (1019)
+.+. .+++++.+++.+.+.+++|++.++..|.++|.+++|.+|..|||||+||+|+|...+..... ...|+|+||||
T Consensus 157 ~~~~-~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~s~l~~VDL 235 (328)
T cd00106 157 REDP-KGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDGRSIKSSKLNLVDL 235 (328)
T ss_pred EEcC-CCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCCccEEEEEEEEEEC
Confidence 5433 37788999999999999999999999999999999999999999999999999998876654 78999999999
Q ss_pred CCCccccCCcchhhhHHHHHHHhHhHHHHHHHHHHHhcCC--CCccCcCchhhhhhhhccCCccccceeEecCCCCCCHH
Q 001734 731 AGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKN--PHVPYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYS 808 (1019)
Q Consensus 731 AGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~--~hIPYRdSKLTrLLqdSLGGnskT~mI~~ISP~~~~~~ 808 (1019)
||+|+....+..+.+++|+..||+||.+|++||.+|+.++ .|||||+||||+||||+|||+++|+||+||+|...+++
T Consensus 236 aGse~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~ 315 (328)
T cd00106 236 AGSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYD 315 (328)
T ss_pred CCCCcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHH
Confidence 9999999999999999999999999999999999999988 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHhc
Q 001734 809 ETISTLKFAERVS 821 (1019)
Q Consensus 809 ETlsTL~FA~Rak 821 (1019)
||++||+||+|++
T Consensus 316 eTl~tL~~a~r~~ 328 (328)
T cd00106 316 ETLSTLRFASRAK 328 (328)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999985
No 23
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=3.1e-67 Score=589.75 Aligned_cols=326 Identities=46% Similarity=0.722 Sum_probs=290.5
Q ss_pred CEEEEeecCCCCCCccC--CCccEEEeCCCC-eEEEeCCCCCCCCCceeeeeceeeCCCCChHHHHhc-hHHHHHHHHcC
Q 001734 495 NIRVYCRIRPFLPGQSK--KQTTIEYIGENG-ELVVSNPLKQGKDNHRLFKFNKVFGPEASQEEVFLD-TRPLIRSVLDG 570 (1019)
Q Consensus 495 nIrV~~RVRP~~~~e~~--~~~~v~~~~~~~-~~~i~~p~~~~~~~~k~F~FD~VF~~~atQeeVf~~-~~pLV~svLdG 570 (1019)
+|+|+|||||+...+.. ....+.+.+.++ .+++.++.. ....+.|.||+||+++++|++||+. +.|+|+++++|
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G 78 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPKN--RKEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEG 78 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCCC--CCCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcC
Confidence 69999999999887643 344555554443 566665532 2345789999999999999999998 58999999999
Q ss_pred cceeEEeecccCCCCceeeecCCCCCCCccchhHHHHHHHHHHHhhccCCceEEEEEEEEEEecceeeeccCCCCCCccc
Q 001734 571 YNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRRL 650 (1019)
Q Consensus 571 ~N~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~l 650 (1019)
+|+||||||+|||||||||+|+ ..++||+||++++||..+........|.|+|||+|||+|.|+|||++.. ..+
T Consensus 79 ~~~~i~~yG~tgSGKT~tl~G~----~~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~--~~l 152 (335)
T smart00129 79 YNATIFAYGQTGSGKTYTMSGT----PDSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPSP--KKL 152 (335)
T ss_pred CceeEEEeCCCCCCCceEecCC----CCCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCCC--CCc
Confidence 9999999999999999999995 4678999999999999988777678899999999999999999998763 344
Q ss_pred ccccccCCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCCCCcceEEEEEEeE--ecCCCcEEEeeeEEE
Q 001734 651 GIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGT--DLKNGAILRGSLHLI 728 (1019)
Q Consensus 651 ~i~~~~~~g~~vv~~~~~~vv~s~edv~~ll~~g~~nR~~~sT~~N~~SSRSH~IftI~V~~~--~~~~~~~~~skL~lV 728 (1019)
.+.. +..+++++.++++..+.+++|+..++..|.++|.+++|.+|..|||||+||+|+|.+. +...+....|+|+||
T Consensus 153 ~i~~-~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~~~~~~~~s~l~~V 231 (335)
T smart00129 153 EIRE-DKKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKNSSSGSGKASKLNLV 231 (335)
T ss_pred EEEE-CCCCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecCCCCCCEEEEEEEEE
Confidence 5544 3457888999999999999999999999999999999999999999999999999976 445567889999999
Q ss_pred ecCCCccccCCcchhhhHHHHHHHhHhHHHHHHHHHHHhc--CCCCccCcCchhhhhhhhccCCccccceeEecCCCCCC
Q 001734 729 DLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAH--KNPHVPYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDS 806 (1019)
Q Consensus 729 DLAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~--k~~hIPYRdSKLTrLLqdSLGGnskT~mI~~ISP~~~~ 806 (1019)
||||+||..+.++.|.+++|+..||+||.+|++||.+|++ +..|||||+|+||+||+++|||+++|+||+||||...+
T Consensus 232 DLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~ 311 (335)
T smart00129 232 DLAGSERASKTGAEGDRLKEAGNINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSN 311 (335)
T ss_pred ECCCCCccccccChhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccc
Confidence 9999999999999999999999999999999999999998 67799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhccccccccc
Q 001734 807 YSETISTLKFAERVSGVELGAAR 829 (1019)
Q Consensus 807 ~~ETlsTL~FA~Rak~I~~~~~k 829 (1019)
++||++||+||+++++|+++|.+
T Consensus 312 ~~eTl~tL~~a~~~~~i~~~p~~ 334 (335)
T smart00129 312 LEETLSTLRFASRAKEIKNKAIV 334 (335)
T ss_pred hHHHHHHHHHHHHHhhcccCCCc
Confidence 99999999999999999988864
No 24
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=3.7e-68 Score=596.81 Aligned_cols=321 Identities=43% Similarity=0.683 Sum_probs=275.7
Q ss_pred ecCCCCCCccCCCcc--EEEeCCCCeEEEeCCCCCCCCCceeeeeceeeCCCCChHHHHhc-hHHHHHHHHcCcceeEEe
Q 001734 501 RIRPFLPGQSKKQTT--IEYIGENGELVVSNPLKQGKDNHRLFKFNKVFGPEASQEEVFLD-TRPLIRSVLDGYNVCIFA 577 (1019)
Q Consensus 501 RVRP~~~~e~~~~~~--v~~~~~~~~~~i~~p~~~~~~~~k~F~FD~VF~~~atQeeVf~~-~~pLV~svLdG~N~~IfA 577 (1019)
||||+++.|...... +......................+.|.||+||+++++|++||+. +.|+|+++|+|||+||||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~a 80 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFA 80 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEe
Confidence 899999887654333 22221111111111112223356789999999999999999998 699999999999999999
Q ss_pred ecccCCCCceeeecCCCCCCCccchhHHHHHHHHHHHhhccCC--ceEEEEEEEEEEecceeeeccCCCC--CCcccccc
Q 001734 578 YGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKNS--ILYEVGVQMVEIYNEQVRDLLSSDG--PQRRLGIW 653 (1019)
Q Consensus 578 YGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~--~~~~V~vS~lEIYnE~V~DLL~~~~--~~~~l~i~ 653 (1019)
||||||||||||+|+ ....++||+||++++||..+...... +.|.|+|||+|||||+|+|||++.. ....+.++
T Consensus 81 yG~tgSGKT~Tm~G~--~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~i~ 158 (335)
T PF00225_consen 81 YGQTGSGKTYTMFGS--NDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLKIR 158 (335)
T ss_dssp EESTTSSHHHHHTBS--TSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBEEE
T ss_pred ecccccccccccccc--ccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCcccccccccccee
Confidence 999999999999995 23678999999999999998876654 7899999999999999999999874 23456676
Q ss_pred cccCCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCCCCcceEEEEEEeEecCCCc----EEEeeeEEEe
Q 001734 654 NATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLKNGA----ILRGSLHLID 729 (1019)
Q Consensus 654 ~~~~~g~~vv~~~~~~vv~s~edv~~ll~~g~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~----~~~skL~lVD 729 (1019)
.+...|.+.+.+++.+.+.++++++.+|..|.++|.+++|.+|..|||||+||+|+|.+.+..... ...|+|+|||
T Consensus 159 ~~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l~~vD 238 (335)
T PF00225_consen 159 EDSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRLTFVD 238 (335)
T ss_dssp EETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEE
T ss_pred eccccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccceeecceeeee
Confidence 666555688999999999999999999999999999999999999999999999999998877654 4789999999
Q ss_pred cCCCccccCCcch-hhhHHHHHHHhHhHHHHHHHHHHHhcC--CCCccCcCchhhhhhhhccCCccccceeEecCCCCCC
Q 001734 730 LAGSERVDRSEAT-GDRLREAQHINKSLSALGDVIFALAHK--NPHVPYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDS 806 (1019)
Q Consensus 730 LAGSER~~ks~~~-g~rlkEa~~INkSLsaLg~VI~aLa~k--~~hIPYRdSKLTrLLqdSLGGnskT~mI~~ISP~~~~ 806 (1019)
|||+||..+..+. +.+++|+..||+||.+|++||.+|+.+ ..|||||+||||+||+|+|||||+|+||+||||...+
T Consensus 239 LaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~~ 318 (335)
T PF00225_consen 239 LAGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSED 318 (335)
T ss_dssp EEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGGG
T ss_pred cccccccccccccccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceecccccccccceeEEEcCCcccc
Confidence 9999999988864 889999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhccc
Q 001734 807 YSETISTLKFAERVSGV 823 (1019)
Q Consensus 807 ~~ETlsTL~FA~Rak~I 823 (1019)
++||++||+||++++.|
T Consensus 319 ~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 319 YEETLSTLRFASRAREI 335 (335)
T ss_dssp HHHHHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 99999999999999986
No 25
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.3e-63 Score=563.06 Aligned_cols=326 Identities=35% Similarity=0.503 Sum_probs=279.3
Q ss_pred CCEEEEeecCCCCCCccCCC-ccEEEeCCCCeEEEeCCCCCCCC-----CceeeeeceeeCCCCChHHHHhc-hHHHHHH
Q 001734 494 GNIRVYCRIRPFLPGQSKKQ-TTIEYIGENGELVVSNPLKQGKD-----NHRLFKFNKVFGPEASQEEVFLD-TRPLIRS 566 (1019)
Q Consensus 494 GnIrV~~RVRP~~~~e~~~~-~~v~~~~~~~~~~i~~p~~~~~~-----~~k~F~FD~VF~~~atQeeVf~~-~~pLV~s 566 (1019)
..|-|+||-||++..|.... ..|..++..+.+++..|.. ..+ ..+.|.||++||..++++.||.- ++|||..
T Consensus 208 hrI~VCVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk~-kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~PlV~~ 286 (676)
T KOG0246|consen 208 HRICVCVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPKL-KVDLTKYLENQKFRFDYAFDESASNELVYRFTAKPLVKT 286 (676)
T ss_pred ceEEEEeecCCCCchhccccccceEeccccceEEeecccc-ccchHHHHhhceEEEeeecccccchHHHHHHhhhHHHHH
Confidence 46999999999998876433 3445555666677666532 222 23579999999999999999987 6999999
Q ss_pred HHcCcceeEEeecccCCCCceeeecCCCCCCC--ccchhHHHHHHHHHHHhhc-cCCceEEEEEEEEEEecceeeeccCC
Q 001734 567 VLDGYNVCIFAYGQTGSGKTYTMSGPCISSTE--DWGVNYRALNDLFEISESR-KNSILYEVGVQMVEIYNEQVRDLLSS 643 (1019)
Q Consensus 567 vLdG~N~~IfAYGQTGSGKTyTM~G~~~~~~~--~~GIipRal~~LF~~~~~~-~~~~~~~V~vS~lEIYnE~V~DLL~~ 643 (1019)
+|+|--+|+||||||||||||||-|...+... ..||..++.+|+|..+... -....+.|+++|+|||+.+|||||+.
T Consensus 287 IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL~~ 366 (676)
T KOG0246|consen 287 IFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLLND 366 (676)
T ss_pred HHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhhcc
Confidence 99999999999999999999999997654333 4599999999999987652 24567899999999999999999987
Q ss_pred CCCCcccccccccCCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCCCCcceEEEEEEeEecCCCcEEEe
Q 001734 644 DGPQRRLGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLKNGAILRG 723 (1019)
Q Consensus 644 ~~~~~~l~i~~~~~~g~~vv~~~~~~vv~s~edv~~ll~~g~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~~s 723 (1019)
.. ++.+. .+....+.+-++.+..|+..+||+++|+.|+.-|+.+.|..|+.|||||+||+|.+... .+...+|
T Consensus 367 k~---KLrvL-EDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~---~~~k~hG 439 (676)
T KOG0246|consen 367 KK---KLRVL-EDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKH---GEFKLHG 439 (676)
T ss_pred cc---ceEEe-ecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecC---CcceeEe
Confidence 43 33333 34456778889999999999999999999999999999999999999999999999643 2357899
Q ss_pred eeEEEecCCCcc-ccCCcchhhhHHHHHHHhHhHHHHHHHHHHHhcCCCCccCcCchhhhhhhhccCC-ccccceeEecC
Q 001734 724 SLHLIDLAGSER-VDRSEATGDRLREAQHINKSLSALGDVIFALAHKNPHVPYRNSKLTQVLQSSLGG-QAKTLMMVQLN 801 (1019)
Q Consensus 724 kL~lVDLAGSER-~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~~hIPYRdSKLTrLLqdSLGG-nskT~mI~~IS 801 (1019)
++.||||||+|| ++.+.+..++..||+.|||||+||..||.||.+.+.|+|||.||||++|+|||-| |++|+||+|||
T Consensus 440 KfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk~H~PFR~SKLTqVLRDSFIGenSrTcMIA~IS 519 (676)
T KOG0246|consen 440 KFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKSHLPFRGSKLTQVLRDSFIGENSRTCMIATIS 519 (676)
T ss_pred EEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhHHHHHHHhhcCCCCceEEEEEeC
Confidence 999999999999 4666777788899999999999999999999999999999999999999999988 99999999999
Q ss_pred CCCCCHHHHHHHHHHHhHhccccccc
Q 001734 802 PDVDSYSETISTLKFAERVSGVELGA 827 (1019)
Q Consensus 802 P~~~~~~ETlsTL~FA~Rak~I~~~~ 827 (1019)
|...+++.||+|||||+|||......
T Consensus 520 Pg~~ScEhTLNTLRYAdRVKeLsv~~ 545 (676)
T KOG0246|consen 520 PGISSCEHTLNTLRYADRVKELSVDG 545 (676)
T ss_pred CCcchhhhhHHHHHHHHHHHhhcCCC
Confidence 99999999999999999999876543
No 26
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=5.7e-64 Score=579.54 Aligned_cols=330 Identities=38% Similarity=0.616 Sum_probs=286.7
Q ss_pred hccCCEEEEeecCCCCCCccCCCccEEEeCCCCeEEEeCCCC-------CCCCCceeeeeceeeCCCCChHHHHhc-hHH
Q 001734 491 DLKGNIRVYCRIRPFLPGQSKKQTTIEYIGENGELVVSNPLK-------QGKDNHRLFKFNKVFGPEASQEEVFLD-TRP 562 (1019)
Q Consensus 491 elkGnIrV~~RVRP~~~~e~~~~~~v~~~~~~~~~~i~~p~~-------~~~~~~k~F~FD~VF~~~atQeeVf~~-~~p 562 (1019)
+.+..|.|||||||+.+ ......++.++ ++.++++..|.. ++....+.|.|.+||+|+++|.+||.. +.|
T Consensus 28 ~~~d~v~v~~rvrP~~~-~~~~~g~l~v~-n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~~p 105 (809)
T KOG0247|consen 28 ESKDPVLVVCRVRPLSD-ASEDEGCLRVI-NEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTTVAP 105 (809)
T ss_pred hhhcchheeEeecCCCC-CccccceEEEe-ccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHHhHH
Confidence 45789999999999986 33344555555 445666665532 333445789999999999999999998 599
Q ss_pred HHHHHHcCcceeEEeecccCCCCceeeecCCCCCCCccchhHHHHHHHHHHHhhc-------------------------
Q 001734 563 LIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESR------------------------- 617 (1019)
Q Consensus 563 LV~svLdG~N~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~------------------------- 617 (1019)
+|.+++.|-|..+|+||-|||||||||+|+ +.++||+||+++-||..++.+
T Consensus 106 lV~dlLkgqn~LlFTyGVTgSGKTYTm~G~----~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL 181 (809)
T KOG0247|consen 106 LVKDLLKGQNSLLFTYGVTGSGKTYTMTGT----PDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALL 181 (809)
T ss_pred HHHHHHcccceeEEEeeccCCCceEEeecC----CCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHH
Confidence 999999999999999999999999999994 578899999999999765431
Q ss_pred ---------------------------------------cCCceEEEEEEEEEEecceeeeccCCCCCCcc---cccccc
Q 001734 618 ---------------------------------------KNSILYEVGVQMVEIYNEQVRDLLSSDGPQRR---LGIWNA 655 (1019)
Q Consensus 618 ---------------------------------------~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~---l~i~~~ 655 (1019)
..++.|.|+|||+|||||-|||||.+.+.... +.+...
T Consensus 182 ~lkr~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~~~ll~~ 261 (809)
T KOG0247|consen 182 QLKREAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQKLKLLRE 261 (809)
T ss_pred hhhhhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhhhhhhhhh
Confidence 02346999999999999999999987654322 234455
Q ss_pred cCCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCCCCcceEEEEEEeEecC--CCcEEEeeeEEEecCCC
Q 001734 656 TLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDLK--NGAILRGSLHLIDLAGS 733 (1019)
Q Consensus 656 ~~~g~~vv~~~~~~vv~s~edv~~ll~~g~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~--~~~~~~skL~lVDLAGS 733 (1019)
+..+..++.+++++.|++.+|+++++..|.++|.+++|.+|..|||||+||+|.|.+.... ++.+..|.|.|||||||
T Consensus 262 d~~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~~s~~i~vSqlsLvDLAGS 341 (809)
T KOG0247|consen 262 DTNGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQDSNQITVSQLSLVDLAGS 341 (809)
T ss_pred ccCCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecccccccCceeEEeeeeeecccc
Confidence 6678889999999999999999999999999999999999999999999999999877665 56788999999999999
Q ss_pred ccccCCcchhhhHHHHHHHhHhHHHHHHHHHHHhcC-----CCCccCcCchhhhhhhhccCCccccceeEecCCCCCCHH
Q 001734 734 ERVDRSEATGDRLREAQHINKSLSALGDVIFALAHK-----NPHVPYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYS 808 (1019)
Q Consensus 734 ER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k-----~~hIPYRdSKLTrLLqdSLGGnskT~mI~~ISP~~~~~~ 808 (1019)
||..++++.|.||+||.+||.||.+||.||.+|..+ +.+||||+||||+++|.+|.|..|.+||+||+|...+|+
T Consensus 342 ERt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~Yd 421 (809)
T KOG0247|consen 342 ERTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDYD 421 (809)
T ss_pred hhcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhHH
Confidence 999999999999999999999999999999999853 468999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHhcccccc
Q 001734 809 ETISTLKFAERVSGVELG 826 (1019)
Q Consensus 809 ETlsTL~FA~Rak~I~~~ 826 (1019)
|+++.|+||.-+..|.+.
T Consensus 422 Enl~vlkFaeiaq~v~v~ 439 (809)
T KOG0247|consen 422 ENLNVLKFAEIAQEVEVA 439 (809)
T ss_pred HHHHHHHHHHhccccccc
Confidence 999999999999998654
No 27
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=7e-64 Score=593.92 Aligned_cols=342 Identities=34% Similarity=0.541 Sum_probs=289.9
Q ss_pred cCCCCCCccCC--CccEEEeCCCCeEEEeCCCCCCCCCceeeeeceeeCCCCChHHHHhc-hHHHHHHHHcCcceeEEee
Q 001734 502 IRPFLPGQSKK--QTTIEYIGENGELVVSNPLKQGKDNHRLFKFNKVFGPEASQEEVFLD-TRPLIRSVLDGYNVCIFAY 578 (1019)
Q Consensus 502 VRP~~~~e~~~--~~~v~~~~~~~~~~i~~p~~~~~~~~k~F~FD~VF~~~atQeeVf~~-~~pLV~svLdG~N~~IfAY 578 (1019)
|||+...+... ..++.+.+.+.++++. +..+|+||+||+....|.++|+. +.|+++.+++|||+|++||
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~ig--------~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlay 72 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAIG--------KDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAY 72 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceeec--------CCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeee
Confidence 68988766543 3345555555555553 34689999999999999999988 6999999999999999999
Q ss_pred cccCCCCceeeecCCCCCCCccchhHHHHHHHHHHHhhccCCceEEEEEEEEEEecceeeeccCCCCCCcccccccccCC
Q 001734 579 GQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRRLGIWNATLP 658 (1019)
Q Consensus 579 GQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~l~i~~~~~~ 658 (1019)
|||||||||||.+.+.....+.|+|||++.++|..+..... ..|.|.|||+|||++.|+|||.|......+.+ ....
T Consensus 73 gQtgsgkTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~-~~f~i~vs~vely~e~v~dl~~~~~~~~~i~~--~e~~ 149 (913)
T KOG0244|consen 73 GQTGSGKTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTES-FVFRITVSFVELYNEEVLDLLKPSRLKANIKL--REPK 149 (913)
T ss_pred cccCCCceeecccccccccccCCcCcchHHHHHHHHHhhhc-cceeeeeeeeeccchhhhhhcChhhhhhceec--cccC
Confidence 99999999999886544444579999999999998887654 78999999999999999999996544333333 3344
Q ss_pred CceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCCCCcceEEEEEEeEec-CCCcEEEeeeEEEecCCCcccc
Q 001734 659 NGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDL-KNGAILRGSLHLIDLAGSERVD 737 (1019)
Q Consensus 659 g~~vv~~~~~~vv~s~edv~~ll~~g~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~-~~~~~~~skL~lVDLAGSER~~ 737 (1019)
|.+.+.+++...+.+..+++..+..|.-.|++++|+||+.|||||+|||+.+.+... .....++++|||||||||||.+
T Consensus 150 g~it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~~s~~~sKlhlVDLAGSER~k 229 (913)
T KOG0244|consen 150 GEITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSKRSSFCSKLHLVDLAGSERVK 229 (913)
T ss_pred CceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhccchhhhhhheeecccccccc
Confidence 778888999999999999999999999999999999999999999999999976432 3345678999999999999999
Q ss_pred CCcchhhhHHHHHHHhHhHHHHHHHHHHHhcCCC--CccCcCchhhhhhhhccCCccccceeEecCCCCCCHHHHHHHHH
Q 001734 738 RSEATGDRLREAQHINKSLSALGDVIFALAHKNP--HVPYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYSETISTLK 815 (1019)
Q Consensus 738 ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~~--hIPYRdSKLTrLLqdSLGGnskT~mI~~ISP~~~~~~ETlsTL~ 815 (1019)
++++.|+|++|+.+||.+|++||+||+||..... |||||+|||||||||+||||++|+||+||||+..++.||++||+
T Consensus 230 kT~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnTl~ 309 (913)
T KOG0244|consen 230 KTKAEGDRLKEGININGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNTLR 309 (913)
T ss_pred ccccchhhhhhccCcchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHHHH
Confidence 9999999999999999999999999999997665 99999999999999999999999999999999999999999999
Q ss_pred HHhHhccccccccccCCC-cchHHHHHHHHHHHHHHHHHH
Q 001734 816 FAERVSGVELGAARSNKE-GSDVRELMEQVGSLKDIITKK 854 (1019)
Q Consensus 816 FA~Rak~I~~~~~k~~~~-~~~v~eL~~ev~~Lk~~i~~~ 854 (1019)
||.|++.|++.|+.++.. ...+..|+.|+..|+..+..+
T Consensus 310 ya~Rak~iknk~vvN~d~~~~~~~~lK~ql~~l~~ell~~ 349 (913)
T KOG0244|consen 310 YADRAKQIKNKPVVNQDPKSFEMLKLKAQLEPLQVELLSK 349 (913)
T ss_pred HhhHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999998876622 233555566666665555444
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.7e-59 Score=554.94 Aligned_cols=309 Identities=40% Similarity=0.618 Sum_probs=274.4
Q ss_pred ceeeeeceeeCCCCChHHHHhc-hHHHHHHHHcCcceeEEeecccCCCCceeeecCCCCCCCccchhHHHHHHHHHHHhh
Q 001734 538 HRLFKFNKVFGPEASQEEVFLD-TRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISES 616 (1019)
Q Consensus 538 ~k~F~FD~VF~~~atQeeVf~~-~~pLV~svLdG~N~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~ 616 (1019)
..+|.||+||++.++|++||+. +.|++++++.|||+||||||||||||||||.|. ..++||||+++.+||+.+..
T Consensus 55 ~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~TvfayGqTgsgKtyt~~G~----~~~~Gii~~~l~~lf~~l~~ 130 (568)
T COG5059 55 EGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGT----EEEPGIIPLSLKELFSKLED 130 (568)
T ss_pred ceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccceEEEEcccCCCceeEeecC----ccccchHHHHHHHHHHHHHh
Confidence 5679999999999999999988 699999999999999999999999999999994 57899999999999999888
Q ss_pred ccCCceEEEEEEEEEEecceeeeccCCCCCCcccccccccCCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCc
Q 001734 617 RKNSILYEVGVQMVEIYNEQVRDLLSSDGPQRRLGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALN 696 (1019)
Q Consensus 617 ~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~l~i~~~~~~g~~vv~~~~~~vv~s~edv~~ll~~g~~nR~~~sT~~N 696 (1019)
......|.|.|||+|||||+++|||.+.... .....+..+++++.+++...+.+.++++.+|..|..+|.+++|.+|
T Consensus 131 ~~~~~~~~v~is~lEiYnEk~~DLl~~~~~~---~~~~~~~~~~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n 207 (568)
T COG5059 131 LSMTKDFAVSISYLEIYNEKIYDLLSPNEES---LNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEIN 207 (568)
T ss_pred cccCcceeeEeehhHHHhhHHHhhccCcccc---ccccccCCCceEeecceEEecCChHHHHHHHHHhhhhcccccchhc
Confidence 7777789999999999999999999986543 2233455677888889999999999999999999999999999999
Q ss_pred CCCCCCcceEEEEEEeEecCCCcEEEeeeEEEecCCCccccCCcchhhhHHHHHHHhHhHHHHHHHHHHHhc--CCCCcc
Q 001734 697 ERSSRSHSILTIHVRGTDLKNGAILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAH--KNPHVP 774 (1019)
Q Consensus 697 ~~SSRSH~IftI~V~~~~~~~~~~~~skL~lVDLAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~--k~~hIP 774 (1019)
..|||||+||++++.+.+...+....++|+||||||||++..++..+.|++|+..||+||.+||+||.+|.. +..|||
T Consensus 208 ~~ssRshsi~~i~~~~~~~~~~~~~~~~l~lvDLagSE~~~~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~~~~~ip 287 (568)
T COG5059 208 DESSRSHSIFQIELASKNKVSGTSETSKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINALGDKKKSGHIP 287 (568)
T ss_pred cccccceEEEEEEEEEeccCccceecceEEEEeeccccccchhhcccchhhhhhhhHhhHHHHHHHHHHHhccccCCccc
Confidence 999999999999999998877777778999999999999999999999999999999999999999999997 788999
Q ss_pred CcCchhhhhhhhccCCccccceeEecCCCCCCHHHHHHHHHHHhHhccccccccccC--CCcchHHHHHHHHHHHHHHHH
Q 001734 775 YRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYSETISTLKFAERVSGVELGAARSN--KEGSDVRELMEQVGSLKDIIT 852 (1019)
Q Consensus 775 YRdSKLTrLLqdSLGGnskT~mI~~ISP~~~~~~ETlsTL~FA~Rak~I~~~~~k~~--~~~~~v~eL~~ev~~Lk~~i~ 852 (1019)
||+||||||||++|||+++|.|||||+|...+++||.+||+||.|+++|++.+.... .....+.++..++...++.+.
T Consensus 288 yReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 367 (568)
T COG5059 288 YRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSSSDSSREIEEIKFDLSEDRSEIE 367 (568)
T ss_pred hhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccCcCcchHHHHHHHhhhhhhhhhhh
Confidence 999999999999999999999999999999999999999999999999988765542 122334444444444444443
Q ss_pred H
Q 001734 853 K 853 (1019)
Q Consensus 853 ~ 853 (1019)
.
T Consensus 368 ~ 368 (568)
T COG5059 368 I 368 (568)
T ss_pred h
Confidence 3
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=7.5e-50 Score=414.50 Aligned_cols=176 Identities=57% Similarity=0.881 Sum_probs=167.6
Q ss_pred HHhchHHHHHHHHcCcceeEEeecccCCCCceeeecCCCCCCCccchhHHHHHHHHHHHhhccCCceEEEEEEEEEEecc
Q 001734 556 VFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKNSILYEVGVQMVEIYNE 635 (1019)
Q Consensus 556 Vf~~~~pLV~svLdG~N~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V~vS~lEIYnE 635 (1019)
||+.+.|+|+.+++|||+||||||||||||||||+|+ ..++||+||++++
T Consensus 8 vf~~~~~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~----~~~~Giip~~~~~-------------------------- 57 (186)
T cd01363 8 VFRDVGPLLQSALDGYNVCIFAYGQTGSGKTYTMEGK----REGAGIIPRTVTD-------------------------- 57 (186)
T ss_pred HHHHHHHHHHHHhCCcceeEEEECCCCCcceEecCCC----CCCCCcchHHHHH--------------------------
Confidence 9998669999999999999999999999999999995 3788999999987
Q ss_pred eeeeccCCCCCCcccccccccCCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCCCCcceEEEEEEeEec
Q 001734 636 QVRDLLSSDGPQRRLGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGTDL 715 (1019)
Q Consensus 636 ~V~DLL~~~~~~~~l~i~~~~~~g~~vv~~~~~~vv~s~edv~~ll~~g~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~ 715 (1019)
++.++..|.++|++++|.+|+.|||||+||+|+|.+.+.
T Consensus 58 -----------------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~ 96 (186)
T cd01363 58 -----------------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNA 96 (186)
T ss_pred -----------------------------------------HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeec
Confidence 788999999999999999999999999999999998876
Q ss_pred CC---CcEEEeeeEEEecCCCccccCCcchhhhHHHHHHHhHhHHHHHHHHHHHhcCCCCccCcCchhhhhhhhccCCcc
Q 001734 716 KN---GAILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALAHKNPHVPYRNSKLTQVLQSSLGGQA 792 (1019)
Q Consensus 716 ~~---~~~~~skL~lVDLAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa~k~~hIPYRdSKLTrLLqdSLGGns 792 (1019)
.. +....++|+||||||||+.++++..+++++|+..||+||++|++||.+|++++.|||||+||||+||||+|||||
T Consensus 97 ~~~~~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~~~vpyr~SkLT~lL~~~L~g~~ 176 (186)
T cd01363 97 LASATEQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAERDSHVPYRESKLTRLLQDSLGGNS 176 (186)
T ss_pred CCCCccceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHhcCCCC
Confidence 55 566789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeEecCC
Q 001734 793 KTLMMVQLNP 802 (1019)
Q Consensus 793 kT~mI~~ISP 802 (1019)
+|+||+||||
T Consensus 177 ~t~~i~~vsP 186 (186)
T cd01363 177 RTLMVACISP 186 (186)
T ss_pred eEEEEEEeCc
Confidence 9999999999
No 30
>KOG2046 consensus Calponin [Cytoskeleton]
Probab=99.92 E-value=4.8e-25 Score=225.39 Aligned_cols=124 Identities=27% Similarity=0.411 Sum_probs=110.9
Q ss_pred CCccCCCCCcHHhhhHhhcccchhhHHHHHHHHHHhcCCCCCCCCccHHHHHHHchhhHHHHHHHhhhcCCCccCC----
Q 001734 7 GVFDHSTGTPAENIEALDNMAEGNQLSTLVEWLNEMIPHIHLPFEASEEKLRACLVDGTVLCLVLNKLSPDSVEMG---- 82 (1019)
Q Consensus 7 ~~~~~~~g~s~~~~~~~~~~~~~~r~~e~~~Wie~vlg~~~lp~~~s~edl~~~LrdGviLC~L~N~l~Pgsv~k~---- 82 (1019)
++.+|+||+++++..+++++|+++.+.|++.||+.++. ..++ ...+|..+|+||+|||+|+|+|.||++++.
T Consensus 2 ~n~~~~~gl~~~v~~k~~~k~~~~~~~el~~WI~~~~~-~~~~---~~~~f~~~LKDG~iLCkl~N~l~p~~~~~~~~s~ 77 (193)
T KOG2046|consen 2 ANRGPSYGLSREVQQKIESKYDDELEKELREWIENVVL-TELP---ARGDFQDLLKDGVILCKLINKLYPGVVKKINESK 77 (193)
T ss_pred CCCCCccchHHHHHHHhhcccCHHHHHHHHHHHHHhhc-cCCC---cccCHHHHHcchHHHHHHHHHhCcCccccccccc
Confidence 46789999999999999999999999999999999754 2222 133699999999999999999999888543
Q ss_pred CCCCCCchhHHHHHHHHHhCCCCC---cccccc-cCCChhhHHHHHHHHHhhhhccC
Q 001734 83 ANFEPGPANVKRFLAAMDDMGLPR---FELSDL-EQGNMAPVLQCLRSLRASFSFCD 135 (1019)
Q Consensus 83 ~~~~~~~eNI~~FL~ac~~~Glp~---F~~~DL-E~~n~~~Vv~cL~aL~~~~~~k~ 135 (1019)
++|.+ ||||++|+.||+.+|||. |+++|| |.+|+.+|+.||++|.+++..++
T Consensus 78 ~~f~q-mEnIs~Fi~a~~~ygv~~~d~FqtvDLfE~kd~~~V~vtL~aLa~~a~~~~ 133 (193)
T KOG2046|consen 78 MAFVQ-MENISNFIKAAKKYGVPEVDLFQTVDLFEGKDMAQVQVTLLALARKAQKKG 133 (193)
T ss_pred ccHHH-HHHHHHHHHHHHhcCCChhhcccccccccCCCHHHHHHHHHHHHHHHhhcc
Confidence 56677 999999999999999999 999999 99999999999999999999876
No 31
>COG5199 SCP1 Calponin [Cytoskeleton]
Probab=99.74 E-value=2.3e-18 Score=167.95 Aligned_cols=110 Identities=24% Similarity=0.368 Sum_probs=97.8
Q ss_pred HhhcccchhhHHHHHHHHHHhcCCCCCCCCccHHHHHHHchhhHHHHHHHhhhcCCCc---cCCCCCCCCchhHHHHHHH
Q 001734 22 ALDNMAEGNQLSTLVEWLNEMIPHIHLPFEASEEKLRACLVDGTVLCLVLNKLSPDSV---EMGANFEPGPANVKRFLAA 98 (1019)
Q Consensus 22 ~~~~~~~~~r~~e~~~Wie~vlg~~~lp~~~s~edl~~~LrdGviLC~L~N~l~Pgsv---~k~~~~~~~~eNI~~FL~a 98 (1019)
+.+...-++.+.|+..||+.++| ..+.+. .||.++|+|||+||+++|...|+.| .++++|.| ||||..|+.+
T Consensus 5 ~~~~~~~~~~~kev~~Wie~~l~-~k~~pp---gdll~~lkdGv~lCril~ea~~~~I~yKeSkmpFVQ-menIs~Fin~ 79 (178)
T COG5199 5 KNRCPGMDKQQKEVTLWIETVLG-EKFEPP---GDLLSLLKDGVRLCRILNEASPLDIKYKESKMPFVQ-MENISSFING 79 (178)
T ss_pred cccCCCCHHHHHHHHHHHHHHHH-hhhCCc---ccHHHHHhcchHHHHHHhhcCcccceecccCCceee-HHHHHHHHHH
Confidence 34566778899999999999999 555332 2699999999999999999999999 46788888 9999999999
Q ss_pred HHhCCCCC---cccccc-cCCChhhHHHHHHHHHhhhhccCC
Q 001734 99 MDDMGLPR---FELSDL-EQGNMAPVLQCLRSLRASFSFCDE 136 (1019)
Q Consensus 99 c~~~Glp~---F~~~DL-E~~n~~~Vv~cL~aL~~~~~~k~~ 136 (1019)
.+.+|||+ |+|+|| |.+|..+|+.||++|.+|+..+--
T Consensus 80 ~~k~~vpe~elFQT~DLFE~kd~~qV~~~l~slSRya~K~~~ 121 (178)
T COG5199 80 LKKLRVPEYELFQTNDLFEAKDLRQVVICLYSLSRYAQKERM 121 (178)
T ss_pred HHHhCCCHHHHHHhhhHHhhcCHHHHHHHHHHHHHHHHHhcC
Confidence 99999999 999999 999999999999999999987643
No 32
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).
Probab=99.54 E-value=8.4e-15 Score=137.70 Aligned_cols=98 Identities=32% Similarity=0.486 Sum_probs=84.7
Q ss_pred hHHHHHHHHHHhcCCCCCCCCccHHHHHHHchhhHHHHHHHhhhcCCCccCCC----CCCCCchhHHHHHHHHHhCCCCC
Q 001734 31 QLSTLVEWLNEMIPHIHLPFEASEEKLRACLVDGTVLCLVLNKLSPDSVEMGA----NFEPGPANVKRFLAAMDDMGLPR 106 (1019)
Q Consensus 31 r~~e~~~Wie~vlg~~~lp~~~s~edl~~~LrdGviLC~L~N~l~Pgsv~k~~----~~~~~~eNI~~FL~ac~~~Glp~ 106 (1019)
+++++.+||+.+++ ...+ ....+|...|+||++||+|+|.+.|+.++... ..+..++||..||.+|+.+|+|.
T Consensus 2 ~~~~l~~Win~~l~-~~~~--~~v~~~~~~l~dG~~L~~Ll~~~~p~~~~~~~~~~~~~~~~~~Ni~~~l~~~~~~gi~~ 78 (107)
T cd00014 2 QKEELLRWINKVLG-EYGP--VTINNFSTDLKDGIALCKLLNSLSPDLIDKKKINPLSRFKRLENINLALNFAEKLGVPV 78 (107)
T ss_pred hHHHHHHHHHHHhc-cCCC--ccHHHHHHHHhchHHHHHHHHHHCccccccccccccchhhHHHHHHHHHHHHHHcCCce
Confidence 46789999999999 3332 34678999999999999999999999996443 23444789999999999999999
Q ss_pred --cccccc-cCCChhhHHHHHHHHHhhh
Q 001734 107 --FELSDL-EQGNMAPVLQCLRSLRASF 131 (1019)
Q Consensus 107 --F~~~DL-E~~n~~~Vv~cL~aL~~~~ 131 (1019)
|++.|| +.+|..+|+.||++|..++
T Consensus 79 ~~~~~~Dl~~~~n~~~vl~~l~~l~~~~ 106 (107)
T cd00014 79 VNFDAEDLVEDGDEKLVLGLLWSLIRKF 106 (107)
T ss_pred eccCHHHHhhCCCceeeHHHHHHHHHhh
Confidence 999999 7999999999999999886
No 33
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=99.46 E-value=7.4e-14 Score=173.31 Aligned_cols=112 Identities=22% Similarity=0.392 Sum_probs=92.0
Q ss_pred hHHHHHHHHHHhcCCCCCCCCccHHHHHHHchhhHHHHHHHhhhcCCCccCC-----CCCCCCchhHHHHHHHHHhCCCC
Q 001734 31 QLSTLVEWLNEMIPHIHLPFEASEEKLRACLVDGTVLCLVLNKLSPDSVEMG-----ANFEPGPANVKRFLAAMDDMGLP 105 (1019)
Q Consensus 31 r~~e~~~Wie~vlg~~~lp~~~s~edl~~~LrdGviLC~L~N~l~Pgsv~k~-----~~~~~~~eNI~~FL~ac~~~Glp 105 (1019)
|-.||+.|||+|+| ++||++. ||.++|||||+|++|.|.+.|..-..+ ..|.+ ..||..||.|++.+|||
T Consensus 43 r~eE~k~W~e~cl~-edL~ptt---ele~~LRNGV~LAkL~~~f~PD~~~~~~~~~~~~frH-tdNi~q~~~~me~iglP 117 (1401)
T KOG2128|consen 43 RVEEAKRWIEECLG-EDLPPTT---ELEEGLRNGVYLAKLGQFFAPDLEQTIYKANDLHFRH-TDNINQWLRAMESIGLP 117 (1401)
T ss_pred hHHHHHHHHHHHhc-ccCCCch---HHHHHhhhhhHHHHHHhhcCCcceeeeeecCCceeec-chhHHHHHHHHhhcCCC
Confidence 66799999999999 6687663 699999999999999999999544211 12445 89999999999999999
Q ss_pred C---cccccc-cCCChhhHHHHHHHHHhhhhccCCCCccccccccccc
Q 001734 106 R---FELSDL-EQGNMAPVLQCLRSLRASFSFCDEEDTIQDHYRKRWN 149 (1019)
Q Consensus 106 ~---F~~~DL-E~~n~~~Vv~cL~aL~~~~~~k~~g~~~~~~~~~~~~ 149 (1019)
+ |++.|+ |++||+ |+.|||||..|.. |+|..++.+...|+-+
T Consensus 118 ~iF~~E~~Dvy~~kN~p-~i~cihaLs~~l~-k~~~aP~l~~~~gk~~ 163 (1401)
T KOG2128|consen 118 EIFYPETTDVYEGKNIP-VIYCIHALSLYLF-KQGKAPPLQNLSGKVS 163 (1401)
T ss_pred cccccchhhhhcCCCCc-eeeHHHHHHHHHh-cCCCCcccccccccCC
Confidence 9 999999 999999 9999999976664 5777776665555433
No 34
>COG5261 IQG1 Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms]
Probab=99.43 E-value=2.2e-13 Score=161.48 Aligned_cols=102 Identities=29% Similarity=0.554 Sum_probs=92.1
Q ss_pred hhHHHHHHHHHHhcCCCCCCCCccHHHHHHHchhhHHHHHHHhhhcCCCccCC-----CCCCCCchhHHHHHHHHHhCCC
Q 001734 30 NQLSTLVEWLNEMIPHIHLPFEASEEKLRACLVDGTVLCLVLNKLSPDSVEMG-----ANFEPGPANVKRFLAAMDDMGL 104 (1019)
Q Consensus 30 ~r~~e~~~Wie~vlg~~~lp~~~s~edl~~~LrdGviLC~L~N~l~Pgsv~k~-----~~~~~~~eNI~~FL~ac~~~Gl 104 (1019)
=|..||+.||+++++ ..+| +..|.+.||+||+|.+|..+++|..+..+ ..|.+ ..||+.||..+..+||
T Consensus 44 CRv~EaK~WIee~~~-~~l~----~~~fe~slRnGV~La~l~q~f~pd~~~~iF~~~~LQfrH-tdNIN~Fld~i~~vGl 117 (1054)
T COG5261 44 CRVSEAKIWIEEVIE-EALP----ELCFEDSLRNGVFLAKLTQRFNPDLTTVIFPADKLQFRH-TDNINAFLDLIEHVGL 117 (1054)
T ss_pred HhHHHHHHHHHHHhc-cCCc----hhhHHHHHhccchHHHHHHHhCCCceeEeeecccceeec-cccHHHHHhHhhhcCC
Confidence 588899999999999 7776 55899999999999999999999988433 34566 8899999999999999
Q ss_pred CC---cccccc-cCCChhhHHHHHHHHHhhhhccCCC
Q 001734 105 PR---FELSDL-EQGNMAPVLQCLRSLRASFSFCDEE 137 (1019)
Q Consensus 105 p~---F~~~DL-E~~n~~~Vv~cL~aL~~~~~~k~~g 137 (1019)
|+ |+..|| |++|+++|+.|||||.++..|+|-.
T Consensus 118 Pe~FhFEl~DlYekKN~pkViyciHaL~~~ls~~g~t 154 (1054)
T COG5261 118 PESFHFELQDLYEKKNIPKVIYCIHALISMLSWPGKT 154 (1054)
T ss_pred cceeeeehHhhhccCCcchhHHHHHHHHHHhcCCCCC
Confidence 99 999999 9999999999999999999998743
No 35
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []. It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....
Probab=99.30 E-value=3e-12 Score=120.44 Aligned_cols=99 Identities=28% Similarity=0.445 Sum_probs=79.1
Q ss_pred HHHHHHHHHHhcCCCCCCCCccHHHHHHHchhhHHHHHHHhhhcCCCcc-CCCCC-----CCCchhHHHHHHHHHh-CCC
Q 001734 32 LSTLVEWLNEMIPHIHLPFEASEEKLRACLVDGTVLCLVLNKLSPDSVE-MGANF-----EPGPANVKRFLAAMDD-MGL 104 (1019)
Q Consensus 32 ~~e~~~Wie~vlg~~~lp~~~s~edl~~~LrdGviLC~L~N~l~Pgsv~-k~~~~-----~~~~eNI~~FL~ac~~-~Gl 104 (1019)
+.++..||+.+++.... .....+|.+.|+||++||+|+|++.|+.++ ...+. .+.++||..|+.+|+. +|+
T Consensus 1 e~~ll~Win~~l~~~~~--~~~v~~~~~~l~dG~~L~~Li~~l~p~~i~~~~~~~~~~~~~~~~~Ni~~~l~~~~~~lg~ 78 (108)
T PF00307_consen 1 EKELLKWINSHLEKYGK--GRRVTNFSEDLRDGVVLCKLINKLFPGTIDLKKINPNLKSPFDKLENIELALEAAEKKLGI 78 (108)
T ss_dssp HHHHHHHHHHHHTTSTT--TSTCSSTSGGGTTSHHHHHHHHHHSTTSSSGGGSSTSSSSHHHHHHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHcccccC--CCCcCcHHHHhcCHHHHHHHHHHHhhccchhhhccccchhhhHHHHHHHHHHHHHHHHcCC
Confidence 46899999999984411 111226999999999999999999999883 22211 1347899999999988 999
Q ss_pred CC-cccccc-cCCChhhHHHHHHHHHhhhh
Q 001734 105 PR-FELSDL-EQGNMAPVLQCLRSLRASFS 132 (1019)
Q Consensus 105 p~-F~~~DL-E~~n~~~Vv~cL~aL~~~~~ 132 (1019)
|. +.+.|| +.+|...|+.||.+|..+|+
T Consensus 79 ~~~~~~~dl~~~~~~~~vl~~l~~l~~~~e 108 (108)
T PF00307_consen 79 PPLLSPEDLVEKGDEKSVLSFLWQLFRYFE 108 (108)
T ss_dssp SCTS-HHHHHSTT-HHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 99 999999 79999999999999999885
No 36
>smart00033 CH Calponin homology domain. Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.
Probab=99.28 E-value=3.7e-12 Score=118.60 Aligned_cols=93 Identities=29% Similarity=0.366 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhcCCCCCCCCccHHHHHHHchhhHHHHHHHhhhcCCCccCCCC-----CCCCchhHHHHHHHHHhCCCCC
Q 001734 32 LSTLVEWLNEMIPHIHLPFEASEEKLRACLVDGTVLCLVLNKLSPDSVEMGAN-----FEPGPANVKRFLAAMDDMGLPR 106 (1019)
Q Consensus 32 ~~e~~~Wie~vlg~~~lp~~~s~edl~~~LrdGviLC~L~N~l~Pgsv~k~~~-----~~~~~eNI~~FL~ac~~~Glp~ 106 (1019)
+.++..|++.+++. .. ....++|..+|+||++||+|+|.+.|+.++.... .++.++||..||.+|+++|...
T Consensus 2 ~~~l~~Win~~l~~-~~--~~~v~~~~~~l~dG~~L~~L~~~l~p~~i~~~~~~~~~~~~~~~~Ni~~~l~~~~~~g~~~ 78 (103)
T smart00033 2 EKTLLRWVNSLLAE-YG--KPPVTNFSSDLSDGVALCKLLNSLSPGSVDKKKVNASLSRFKKIENINLALSFAEKLGGKL 78 (103)
T ss_pred hHHHHHHHHHHccc-CC--CCcHHHHHHHHccHHHHHHHHHHHCCCcCChhhccccccHHHHHHhHHHHHHHHHHcCCee
Confidence 57899999999983 32 2345689999999999999999999999965431 1234689999999999999533
Q ss_pred --cccccc-cC-CChhhHHHHHHHH
Q 001734 107 --FELSDL-EQ-GNMAPVLQCLRSL 127 (1019)
Q Consensus 107 --F~~~DL-E~-~n~~~Vv~cL~aL 127 (1019)
|++.|| ++ +++..|+.||+.|
T Consensus 79 ~~~~~~Dl~~~~k~~~~v~~~l~~~ 103 (103)
T smart00033 79 VLFEPEDLVEGNKLILGVIWTLILL 103 (103)
T ss_pred eccCHHHHhhcchHHHHHHHHHHhC
Confidence 999999 77 5899999999764
No 37
>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]
Probab=99.11 E-value=9.8e-11 Score=134.57 Aligned_cols=99 Identities=29% Similarity=0.490 Sum_probs=79.2
Q ss_pred HHHHHHHHHh--cCCC-CCC-CCccHHHHHHHchhhHHHHHHHhhhcCCCc-cCCCCCCCCch------hHHHHHHHH-H
Q 001734 33 STLVEWLNEM--IPHI-HLP-FEASEEKLRACLVDGTVLCLVLNKLSPDSV-EMGANFEPGPA------NVKRFLAAM-D 100 (1019)
Q Consensus 33 ~e~~~Wie~v--lg~~-~lp-~~~s~edl~~~LrdGviLC~L~N~l~Pgsv-~k~~~~~~~~e------NI~~FL~ac-~ 100 (1019)
.++.+||..+ |+.. ... +.+..-||+.+|||||+||.|+|.|.|++| .|.+++.++|. ||+.||.+| +
T Consensus 5 rqCarWLidckVLptnhrvtw~~a~v~dlAq~LRDGvLLCqLlnnL~p~sIdlkeIn~rpQmSqFLClkNIrtFl~~C~~ 84 (865)
T KOG2996|consen 5 RQCARWLIDCKVLPTNHRVTWDSAQVFDLAQALRDGVLLCQLLNNLVPHSIDLKEINLRPQMSQFLCLKNIRTFLMFCCE 84 (865)
T ss_pred HHHHHHHhhccccCCCcccccCcchHHHHHHHHhhhhHHHHHHhhcCCCcccHHHhhcCCCccchhhHhhHHHHHHHHHH
Confidence 4688999865 3311 111 134556899999999999999999999999 35566555554 999999999 7
Q ss_pred hCCCCC---cccccc-cCCChhhHHHHHHHHHhhh
Q 001734 101 DMGLPR---FELSDL-EQGNMAPVLQCLRSLRASF 131 (1019)
Q Consensus 101 ~~Glp~---F~~~DL-E~~n~~~Vv~cL~aL~~~~ 131 (1019)
.+||.. |++.|| +-.+|.+|+.+|..|...-
T Consensus 85 ~Fglr~seLF~afDLfdv~dFgKVi~tlS~LS~t~ 119 (865)
T KOG2996|consen 85 KFGLRDSELFEAFDLFDVRDFGKVIKTLSRLSHTP 119 (865)
T ss_pred HhCCchhhhcchhhhhhhhhHHHHHHHHHHhccCh
Confidence 999999 999999 9999999999999886543
No 38
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=99.03 E-value=1.3e-12 Score=157.01 Aligned_cols=271 Identities=28% Similarity=0.303 Sum_probs=177.6
Q ss_pred HHHhhhhhhhhhhccCCEEEEeecCCCCCCccCCCccEEEeCCC----CeEEEeCCCCCCCCCceeeeeceeeCCCCChH
Q 001734 479 LAENRRLYNEVQDLKGNIRVYCRIRPFLPGQSKKQTTIEYIGEN----GELVVSNPLKQGKDNHRLFKFNKVFGPEASQE 554 (1019)
Q Consensus 479 l~erR~L~N~vqelkGnIrV~~RVRP~~~~e~~~~~~v~~~~~~----~~~~i~~p~~~~~~~~k~F~FD~VF~~~atQe 554 (1019)
...+|.|++-++..+ +++|+|+|+|..........+..+.... +.+....+ .+.......|.||.+|.+...+.
T Consensus 291 skLTRlLq~sLgG~~-~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~ 368 (568)
T COG5059 291 SKLTRLLQDSLGGNC-NTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSS-SDSSREIEEIKFDLSEDRSEIEI 368 (568)
T ss_pred hHHHHHHHHhcCCCc-cEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccCc-CcchHHHHHHHhhhhhhhhhhhh
Confidence 346899999999988 9999999999876533322222222111 11111111 11112335699999999999999
Q ss_pred HHHhchHHHHHHHHcCcceeEEeecccCCCCceeeecCCCCCCCccchhHHHHHHHHHHHhhc-cCCceEEEEEEEEEEe
Q 001734 555 EVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESR-KNSILYEVGVQMVEIY 633 (1019)
Q Consensus 555 eVf~~~~pLV~svLdG~N~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~-~~~~~~~V~vS~lEIY 633 (1019)
.++..+..+++..++| +++||++++|+++||.- ...++..-.+...|...... ...|.|...+.++++|
T Consensus 369 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 438 (568)
T COG5059 369 LVFREQSQLSQSSLSG----IFAYMQSLKKETETLKS------RIDLIMKSIISGTFERKKLLKEEGWKYKSTLQFLRIE 438 (568)
T ss_pred HHHHHHHhhhhhhhhh----HHHHHhhhhhhhhcccc------hhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999 99999999999999964 34466666667777655432 3456677777777777
Q ss_pred cceeeeccCCCCCCcccccccccCCCceecCCcEEEEecCHHHHHHHHHhhhhccccccCCCcCCCCCCcceEEEEEEeE
Q 001734 634 NEQVRDLLSSDGPQRRLGIWNATLPNGLAVPEASMYSVQSTADVLELMNIGLMNRAVCSTALNERSSRSHSILTIHVRGT 713 (1019)
Q Consensus 634 nE~V~DLL~~~~~~~~l~i~~~~~~g~~vv~~~~~~vv~s~edv~~ll~~g~~nR~~~sT~~N~~SSRSH~IftI~V~~~ 713 (1019)
-....++.....+.....+.....-........+...- ...+..... .+...+..+++..|.+++++|++|+.+..+.
T Consensus 439 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~ 516 (568)
T COG5059 439 IDRLLLLREEELSKKKTKIHKLNKLRHDLSSLLSSIPE-ETSDRVESE-KASKLRSSASTKLNLRSSRSHSKFRDHLNGS 516 (568)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhhhcch-hhhhhhhhh-hhccchhhcccchhhhhcccchhhhhcccch
Confidence 22222332221111110000000000000001111111 112222222 5678889999999999999999999887655
Q ss_pred ecCCCcEEEeeeEEEecCCCccccCCcchhhhHHHHHHHhHhHHHHHHHHHHHh
Q 001734 714 DLKNGAILRGSLHLIDLAGSERVDRSEATGDRLREAQHINKSLSALGDVIFALA 767 (1019)
Q Consensus 714 ~~~~~~~~~skL~lVDLAGSER~~ks~~~g~rlkEa~~INkSLsaLg~VI~aLa 767 (1019)
....+... ++.|||||+||. .+...|.++++...+|++|..+|++|.++.
T Consensus 517 ~~~~~~~~---~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 517 NSSTKELS---LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred hhhhHHHH---hhhhhccccccc-hhhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 44333332 899999999999 999999999999999999999999998864
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.93 E-value=9e-10 Score=128.20 Aligned_cols=98 Identities=28% Similarity=0.357 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhcCCCCCCCCccHHHHHHHchhhHHHHHHHhhhcCCCccCCCCC-----CCCc----hhHHHHHHHHHhC
Q 001734 32 LSTLVEWLNEMIPHIHLPFEASEEKLRACLVDGTVLCLVLNKLSPDSVEMGANF-----EPGP----ANVKRFLAAMDDM 102 (1019)
Q Consensus 32 ~~e~~~Wie~vlg~~~lp~~~s~edl~~~LrdGviLC~L~N~l~Pgsv~k~~~~-----~~~~----eNI~~FL~ac~~~ 102 (1019)
+.|++.-+++++. ..+- -.-++||.++|.||||||+|+|.|+|.+|+.+... +-.| -||.+||.||++|
T Consensus 574 E~eL~~QLRk~iE-tRLk-~sLp~Dl~aALtDGViLChLaN~lRPRSV~SIHVPSPaV~klsmarcrrNVdnFLeaCRki 651 (722)
T KOG0532|consen 574 EKELMLQLRKLIE-TRLK-VSLPEDLAAALTDGVILCHLANHLRPRSVASIHVPSPAVPKLSMARCRRNVDNFLEACRKI 651 (722)
T ss_pred HHHHHHHHHHHHH-HHhc-ccCchhHHHHhhcchhhHhhhcccCCCCccceecCCCccchhHHHHHHHhHHHHHHHHHHc
Confidence 4455555555554 2111 11234699999999999999999999988544221 1112 2999999999999
Q ss_pred CCCC---cccccc-cC--CChhhHHHHHHHHHhhh
Q 001734 103 GLPR---FELSDL-EQ--GNMAPVLQCLRSLRASF 131 (1019)
Q Consensus 103 Glp~---F~~~DL-E~--~n~~~Vv~cL~aL~~~~ 131 (1019)
|||+ +...|+ .+ .+..+|+.++++++..+
T Consensus 652 GVpEa~lCS~~Dilq~~~r~~rk~~~t~~~~~~~a 686 (722)
T KOG0532|consen 652 GVPEADLCSPMDILQKIERNPRKVARTVLTVGKKA 686 (722)
T ss_pred CCChHhhcCHHHhhhhhcccchhHHHHHHhhcccc
Confidence 9999 899999 54 79999999999886554
No 40
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.84 E-value=1.2e-05 Score=93.39 Aligned_cols=109 Identities=19% Similarity=0.270 Sum_probs=90.6
Q ss_pred CCccCCCCCcHHhhhHhhcccchhhHHHHHHHHHHhcCCC-----CCCCCccHHHHHHHchhhHHHHHHHhhhcCCCcc-
Q 001734 7 GVFDHSTGTPAENIEALDNMAEGNQLSTLVEWLNEMIPHI-----HLPFEASEEKLRACLVDGTVLCLVLNKLSPDSVE- 80 (1019)
Q Consensus 7 ~~~~~~~g~s~~~~~~~~~~~~~~r~~e~~~Wie~vlg~~-----~lp~~~s~edl~~~LrdGviLC~L~N~l~Pgsv~- 80 (1019)
|....+-|++.-+.......+.+..+.+-+.||...++.. -+|.+|...+|.+..+||++||+++|-=.||.|.
T Consensus 96 ~g~~~~~~~~~~sst~~~Hti~eeEk~~fv~hIN~~L~~Dpdl~~~lPinp~t~~lf~~vkDGvlLcKlIN~svPdTIDE 175 (627)
T KOG0046|consen 96 EGIKAASGTLKGSSTGTQHTINEEEKRAFVNHINSYLEGDPDLKHLLPINPNTNDLFDLVKDGVLLCKLINLSVPDTIDE 175 (627)
T ss_pred CCcccccceeecccccceeeecHHHHHHHHHHHHHHhcCCcchhhcCCCCCchHHHHHHhccceeeehhhcccCCCchhh
Confidence 3444456667767777788888999999999999999844 4588888999999999999999999999999993
Q ss_pred ------CCCCCCCCchhHHHHHHHHHhCCCCC--cccccc-cCC
Q 001734 81 ------MGANFEPGPANVKRFLAAMDDMGLPR--FELSDL-EQG 115 (1019)
Q Consensus 81 ------k~~~~~~~~eNI~~FL~ac~~~Glp~--F~~~DL-E~~ 115 (1019)
|..+.+...||...-|..++.+|+.- +.+.|| |++
T Consensus 176 RaiN~kk~Lnp~~~~EN~~l~lnSAkAiGc~VvNIga~Dl~eGr 219 (627)
T KOG0046|consen 176 RAINTKKKLNPFERNENLNLALNSAKAIGCTVVNIGAQDLAEGR 219 (627)
T ss_pred hhhccCCcCChhhhccchhhHHhhcccccceEEecCchhhhcCC
Confidence 33444556899999999999999887 999999 766
No 41
>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins.
Probab=97.24 E-value=0.00036 Score=64.52 Aligned_cols=65 Identities=22% Similarity=0.367 Sum_probs=50.1
Q ss_pred CCCCccHHHHHHHchhhHHHHHHHhhhcCCCccCC-CCCCCC------chhHHHHHHHH-HhCCCCC--cccccc
Q 001734 48 LPFEASEEKLRACLVDGTVLCLVLNKLSPDSVEMG-ANFEPG------PANVKRFLAAM-DDMGLPR--FELSDL 112 (1019)
Q Consensus 48 lp~~~s~edl~~~LrdGviLC~L~N~l~Pgsv~k~-~~~~~~------~eNI~~FL~ac-~~~Glp~--F~~~DL 112 (1019)
.|..+..++|...|+||++||.|++...|+.++.. +.+.+. +.|+..|..+| +.+|... |++.||
T Consensus 7 ~~~~~~v~dl~~~l~DG~~Lc~Lih~Y~P~~l~~~~I~~~~~mS~~~~l~N~~ll~~~c~~~l~~~~~~l~~edl 81 (85)
T PF11971_consen 7 APYFPPVEDLTQDLSDGRALCALIHFYCPQLLPLEDICLKTTMSQADSLYNLQLLNSFCQSHLGFSCCHLEPEDL 81 (85)
T ss_pred CCCCcchhhhhhhhccHHHHHHHHHHhCcceecHhHcccccchHHHHhhhhHHHHHHHHHHHcCCCcCcCCHHHH
Confidence 34556678999999999999999999999999532 333332 34999999999 5588777 666665
No 42
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.93 E-value=0.69 Score=52.22 Aligned_cols=45 Identities=38% Similarity=0.477 Sum_probs=32.8
Q ss_pred HHHHHHHHhhhccc-------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001734 332 LEEQNALRLKKEND-------DRDIEISTLKQDLELAKRTHELHCLQLEEQI 376 (1019)
Q Consensus 332 ~~e~~~~~l~ke~~-------~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~ 376 (1019)
..+.++..|.+..+ +.+.++.+|+++|.-++..|++....+..+.
T Consensus 100 ~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~ 151 (312)
T PF00038_consen 100 DLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQI 151 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT-
T ss_pred HHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Confidence 44555666665554 4667888999999999999998877777655
No 43
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=96.89 E-value=0.092 Score=60.34 Aligned_cols=35 Identities=17% Similarity=0.219 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHH-HHHHHhhhcccc
Q 001734 312 VANQLERIKTEKTNIAQKEKLEE-QNALRLKKENDD 346 (1019)
Q Consensus 312 ~~~~l~~l~~e~~k~eek~~~~e-~~~~~l~ke~~~ 346 (1019)
+...++||+.|+-++|.-...+. --|.+||+....
T Consensus 134 Lsrkl~qLr~ek~~lEq~leqeqef~vnKlm~ki~K 169 (552)
T KOG2129|consen 134 LSRKLKQLRHEKLPLEQLLEQEQEFFVNKLMNKIRK 169 (552)
T ss_pred hhHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567778877777765433222 224566665443
No 44
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.87 E-value=0.99 Score=54.96 Aligned_cols=58 Identities=16% Similarity=0.160 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHH
Q 001734 307 EENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRT 364 (1019)
Q Consensus 307 ee~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~l~ke~~~~~~e~~~Lk~ele~~k~~ 364 (1019)
..++.+.++++.+..+...++.+....+.++..+..+.+.+...+..++.++..++..
T Consensus 213 ~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~ 270 (562)
T PHA02562 213 ENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSK 270 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666667777666666555555555555444443
No 45
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.59 E-value=0.92 Score=62.11 Aligned_cols=14 Identities=29% Similarity=0.468 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 001734 382 ESQKKLQELERLLT 395 (1019)
Q Consensus 382 ~le~~l~e~~~~l~ 395 (1019)
+++..+.+++..++
T Consensus 1017 kle~~l~~le~~le 1030 (1930)
T KOG0161|consen 1017 KLEQQLDDLEVTLE 1030 (1930)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444433333
No 46
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.56 E-value=2.4 Score=51.57 Aligned_cols=22 Identities=14% Similarity=0.110 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhhhhhhhhhhc
Q 001734 471 AAEKYHVILAENRRLYNEVQDL 492 (1019)
Q Consensus 471 ~~~~~~~~l~erR~L~N~vqel 492 (1019)
+.+.|+..-.+|.+|--++-..
T Consensus 383 ~e~~lqEer~E~qkL~~ql~ke 404 (546)
T PF07888_consen 383 LEEHLQEERMERQKLEKQLGKE 404 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555666665555433
No 47
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.55 E-value=1.4 Score=58.04 Aligned_cols=11 Identities=18% Similarity=0.184 Sum_probs=5.4
Q ss_pred EecCHHHHHHH
Q 001734 670 SVQSTADVLEL 680 (1019)
Q Consensus 670 vv~s~edv~~l 680 (1019)
+|.+.+.+..+
T Consensus 625 v~~~l~~a~~~ 635 (1164)
T TIGR02169 625 VVEDIEAARRL 635 (1164)
T ss_pred EEcCHHHHHHH
Confidence 44454555444
No 48
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.51 E-value=2.1 Score=52.12 Aligned_cols=31 Identities=16% Similarity=0.268 Sum_probs=14.5
Q ss_pred cccccc-cCCChhhHHHHHHHHHhhhhccCCC
Q 001734 107 FELSDL-EQGNMAPVLQCLRSLRASFSFCDEE 137 (1019)
Q Consensus 107 F~~~DL-E~~n~~~Vv~cL~aL~~~~~~k~~g 137 (1019)
|..+.+ +.-+-...+.|-..+..|+-.+.++
T Consensus 56 f~Wa~~p~~~~~~s~~~~~V~F~ayyLPk~~~ 87 (546)
T PF07888_consen 56 FVWAPVPENYVEGSAVNCQVQFQAYYLPKDDD 87 (546)
T ss_pred EEeeccCccccCCCccceEEEECcccCCCCCC
Confidence 555544 3322233344445556666665433
No 49
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=96.46 E-value=0.25 Score=57.31 Aligned_cols=44 Identities=25% Similarity=0.332 Sum_probs=37.6
Q ss_pred hHHHHHHHHHhCCCCC-cccccccCCChhhHHHHHHHHHhhhhcc
Q 001734 91 NVKRFLAAMDDMGLPR-FELSDLEQGNMAPVLQCLRSLRASFSFC 134 (1019)
Q Consensus 91 NI~~FL~ac~~~Glp~-F~~~DLE~~n~~~Vv~cL~aL~~~~~~k 134 (1019)
=|.+-|..|+.+|+|. |.++=|-.|.-..|+..|-.|...+-.+
T Consensus 72 ~~~~Il~~lr~~g~~~df~p~kLk~G~Ge~vc~VLd~Lad~AL~~ 116 (359)
T PF10498_consen 72 TISNILDELRKLGVPVDFPPSKLKQGSGEHVCYVLDQLADEALKR 116 (359)
T ss_pred HHHHHHHHHHccCCCCCCChHHhhCCCCHHHHHHHHHHHHHHHHh
Confidence 4678899999999999 9999998888888888888888777643
No 50
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.45 E-value=0.51 Score=57.13 Aligned_cols=132 Identities=20% Similarity=0.228 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHhh---hhhHHHhhhhhHHHhhHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 001734 259 LRKVVPLIERRTA---TQYQNFKNQNNLFRAREEKYKSRIRVLETLTVGTTEENQVVANQLERIKTEKTNIAQKEKLEEQ 335 (1019)
Q Consensus 259 l~kvv~e~e~~is---~q~~~~~~q~~~~~~~~~~~~~~~~~le~l~~~~~ee~~~~~~~l~~l~~e~~k~eek~~~~e~ 335 (1019)
++++|.|..++.+ ....-++.+++-++.+.++-.. .+.++++.+....+.+.++.+|..-+.-+.+..++
T Consensus 97 ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k-------~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~ 169 (546)
T KOG0977|consen 97 ARKLLDETARERAKLEIEITKLREELKELRKKLEKAEK-------ERRGAREKLDDYLSRLSELEAEINTLKRRIKALED 169 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------HHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Confidence 4566666654433 2233344455555555555321 45666667666666666666666555555555555
Q ss_pred HHHHhhhcccch---------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHH
Q 001734 336 NALRLKKENDDR---------------------DIEISTLKQDLELAKRTHELHCLQLEEQIY---------ETKIESQK 385 (1019)
Q Consensus 336 ~~~~l~ke~~~~---------------------~~e~~~Lk~ele~~k~~~e~~~~~le~~~~---------~~k~~le~ 385 (1019)
++.+|.++.... +..+.+|.++|+-++..|+....+...... ..+.+|..
T Consensus 170 e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~ 249 (546)
T KOG0977|consen 170 ELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELAL 249 (546)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHH
Confidence 555555555432 344556777777777777766555544322 34556666
Q ss_pred HHHHHHHHHHHH
Q 001734 386 KLQELERLLTVS 397 (1019)
Q Consensus 386 ~l~e~~~~l~~~ 397 (1019)
-++|++...+..
T Consensus 250 Ai~eiRaqye~~ 261 (546)
T KOG0977|consen 250 AIREIRAQYEAI 261 (546)
T ss_pred HHHHHHHHHHHH
Confidence 666666555443
No 51
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.37 E-value=1.1 Score=56.42 Aligned_cols=32 Identities=19% Similarity=0.308 Sum_probs=23.1
Q ss_pred HhhhhhHHHhhhhhHHHhhHHHHHHHHHHHhh
Q 001734 269 RTATQYQNFKNQNNLFRAREEKYKSRIRVLET 300 (1019)
Q Consensus 269 ~is~q~~~~~~q~~~~~~~~~~~~~~~~~le~ 300 (1019)
|+..-..-|+....-.|..|..+++.|..|..
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~ 453 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSLTN 453 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc
Confidence 44555555777777888888888888776655
No 52
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.33 E-value=1.4 Score=56.62 Aligned_cols=17 Identities=12% Similarity=0.210 Sum_probs=10.6
Q ss_pred chhhHhhhhcccCcCCC
Q 001734 211 SDVKILEFVNSSCMDNA 227 (1019)
Q Consensus 211 ~~~~~~~~~~~~~~~~~ 227 (1019)
|..++.=.||++-|++.
T Consensus 196 p~dkYklfmkaT~L~qi 212 (1074)
T KOG0250|consen 196 PKDKYKLFMKATQLEQI 212 (1074)
T ss_pred hHHHHHHHHHHhHHHHH
Confidence 34466667777777643
No 53
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.19 E-value=2 Score=52.54 Aligned_cols=57 Identities=19% Similarity=0.209 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccc
Q 001734 290 KYKSRIRVLETLTVGTTEENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDD 346 (1019)
Q Consensus 290 ~~~~~~~~le~l~~~~~ee~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~l~ke~~~ 346 (1019)
|.+-.++--++|.....+.+-.|.++++.||.-+.--+|-.++..++|.++..++..
T Consensus 478 KLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~r 534 (961)
T KOG4673|consen 478 KLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTR 534 (961)
T ss_pred HHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555566555555555566655555422222233333444555555555543
No 54
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.18 E-value=2.7 Score=56.10 Aligned_cols=63 Identities=17% Similarity=0.303 Sum_probs=35.3
Q ss_pred HhHHHHHHHHHHHhcC-CCCc----------cCcCchhhhhhhhccCCccccceeEecCCCCCCHHHHHHHHHHHhHhcc
Q 001734 754 KSLSALGDVIFALAHK-NPHV----------PYRNSKLTQVLQSSLGGQAKTLMMVQLNPDVDSYSETISTLKFAERVSG 822 (1019)
Q Consensus 754 kSLsaLg~VI~aLa~k-~~hI----------PYRdSKLTrLLqdSLGGnskT~mI~~ISP~~~~~~ETlsTL~FA~Rak~ 822 (1019)
|||+||.-++.-+.-+ .++. ++--+.+.++|+... +++..++|-+=. -|+.+|++.-+
T Consensus 1072 KsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s-~~sQFIvIThr~----------~~m~~ad~l~G 1140 (1163)
T COG1196 1072 KSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMS-KETQFIVITHRK----------GTMEAADRLVG 1140 (1163)
T ss_pred HHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHHHHHHhC-cCCeEEEEEcCh----------HHHHHHHHHee
Confidence 4788887666554322 2210 122345667777766 555554443322 47778888877
Q ss_pred ccccc
Q 001734 823 VELGA 827 (1019)
Q Consensus 823 I~~~~ 827 (1019)
|....
T Consensus 1141 Vtm~~ 1145 (1163)
T COG1196 1141 VTMQE 1145 (1163)
T ss_pred eEeec
Confidence 76543
No 55
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.12 E-value=2.2 Score=57.11 Aligned_cols=37 Identities=22% Similarity=0.253 Sum_probs=16.3
Q ss_pred HHHHHHHHhHHHHHHHHHhhHHHHHhhhhhHHHHHHH
Q 001734 435 DLRVAFESTKHEVLETKKNYSKEFDCLGLNLKRLIDA 471 (1019)
Q Consensus 435 el~~~~~~~k~ei~~~~~~~~~e~~~l~~~l~~l~~~ 471 (1019)
+++..+..++.++...+..|......+...++.+.+.
T Consensus 827 ~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~ 863 (1201)
T PF12128_consen 827 DLEQELQELEQELNQLQKEVKQRRKELEEELKALEEQ 863 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444443333
No 56
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.11 E-value=1.9 Score=58.27 Aligned_cols=66 Identities=8% Similarity=0.020 Sum_probs=36.0
Q ss_pred hHHHHHHHHhHhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHHH
Q 001734 412 SQRWKRIEHSYQSFMGCQLGVIQDLRVAFESTKHEVLETKKNYSKEFDCLGLNLKRLIDAAEKYHV 477 (1019)
Q Consensus 412 ~~~~~~~~~~~~~~l~~Q~~~l~el~~~~~~~k~ei~~~~~~~~~e~~~l~~~l~~l~~~~~~~~~ 477 (1019)
...|+..-..+...+..+...+++++..+..+..++...+..+.+...........+......|+.
T Consensus 883 r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 948 (1311)
T TIGR00606 883 RQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKE 948 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555556666666666677777777666666666655544333333334334333333333
No 57
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.09 E-value=3.7 Score=53.97 Aligned_cols=12 Identities=25% Similarity=0.648 Sum_probs=7.8
Q ss_pred HHHHhHhccccc
Q 001734 814 LKFAERVSGVEL 825 (1019)
Q Consensus 814 L~FA~Rak~I~~ 825 (1019)
+.+|.++-+|..
T Consensus 1155 ~~~~d~~~~~~~ 1166 (1179)
T TIGR02168 1155 MEVADQLYGVTM 1166 (1179)
T ss_pred HHHhhhHeeeee
Confidence 346888876653
No 58
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.07 E-value=2.1 Score=57.11 Aligned_cols=8 Identities=25% Similarity=-0.297 Sum_probs=3.6
Q ss_pred cchhHHHH
Q 001734 600 WGVNYRAL 607 (1019)
Q Consensus 600 ~GIipRal 607 (1019)
+|.++.++
T Consensus 589 ~g~~~~a~ 596 (1163)
T COG1196 589 PGFLGLAS 596 (1163)
T ss_pred cchhHHHH
Confidence 44444443
No 59
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.06 E-value=4.1 Score=50.48 Aligned_cols=39 Identities=26% Similarity=0.313 Sum_probs=19.0
Q ss_pred HHHHHHHhcCCC--CCCCCccHHHHHHHchhhHHHHHHHhhh
Q 001734 35 LVEWLNEMIPHI--HLPFEASEEKLRACLVDGTVLCLVLNKL 74 (1019)
Q Consensus 35 ~~~Wie~vlg~~--~lp~~~s~edl~~~LrdGviLC~L~N~l 74 (1019)
++.-|..+-+.. .+|... +....+-+|=|.-|...+..+
T Consensus 38 ~~~cL~~I~p~~~~~l~~~l-P~~msaRfr~~~~lA~~~k~l 78 (594)
T PF05667_consen 38 VVRCLRVIDPSLGSSLPRSL-PPGMSARFRVGTSLAQACKEL 78 (594)
T ss_pred HHHHHHHhCccccCCCcccC-ChHHHHHHHHHHHHHHHHHHc
Confidence 444555444432 443321 123556666666666655555
No 60
>PRK11637 AmiB activator; Provisional
Probab=95.97 E-value=5 Score=47.72 Aligned_cols=13 Identities=23% Similarity=0.388 Sum_probs=8.6
Q ss_pred CCCcceEEEEEEe
Q 001734 700 SRSHSILTIHVRG 712 (1019)
Q Consensus 700 SRSH~IftI~V~~ 712 (1019)
...|+.|.|+..+
T Consensus 405 ~~~~l~fei~~~~ 417 (428)
T PRK11637 405 GRPSLYFEIRRQG 417 (428)
T ss_pred CCCeEEEEEEECC
Confidence 4568888777643
No 61
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=95.95 E-value=3.2 Score=57.22 Aligned_cols=73 Identities=18% Similarity=0.266 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001734 330 EKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLTVSKKKVEE 403 (1019)
Q Consensus 330 ~~~~e~~~~~l~ke~~~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le~~l~e~~~~l~~~~~~~~~ 403 (1019)
.+-.+.++.++....++...++..|..++..+.....+-..+++.. +...+++++...++..+++.++.++++
T Consensus 1071 l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~e-r~~r~K~ek~r~dL~~ele~l~~~Lee 1143 (1930)
T KOG0161|consen 1071 LKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAE-RASRAKAERQRRDLSEELEELKEELEE 1143 (1930)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444443333333333332 223444555555555555555555544
No 62
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.83 E-value=1.1 Score=56.22 Aligned_cols=26 Identities=15% Similarity=0.192 Sum_probs=11.0
Q ss_pred hHHHHHHHHHhhHHHHHhhhhhHHHH
Q 001734 443 TKHEVLETKKNYSKEFDCLGLNLKRL 468 (1019)
Q Consensus 443 ~k~ei~~~~~~~~~e~~~l~~~l~~l 468 (1019)
+..-+....+.-.+-|..||..-..+
T Consensus 606 LE~sLsaEtriKldLfsaLg~akrq~ 631 (697)
T PF09726_consen 606 LENSLSAETRIKLDLFSALGDAKRQL 631 (697)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344455555443333
No 63
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.79 E-value=1 Score=60.20 Aligned_cols=127 Identities=24% Similarity=0.329 Sum_probs=61.9
Q ss_pred HHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q 001734 334 EQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLTVSKKKVEELES------- 406 (1019)
Q Consensus 334 e~~~~~l~ke~~~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le~~l~e~~~~l~~~~~~~~~le~------- 406 (1019)
...+..+.++......+....+.+++.++........+.+...++.+...++++.+++..+..+..+++.+.+
T Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~ 713 (1201)
T PF12128_consen 634 NKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQLKQELEELLEELKEQLK 713 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444445555555566666665555555555444322
Q ss_pred -hhhhhhHHHHHHHHhHhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHhhhh
Q 001734 407 -LSESKSQRWKRIEHSYQSFMGCQLGVIQDLRVAFESTKHEVLETKKNYSKEFDCLGL 463 (1019)
Q Consensus 407 -~~~~~~~~~~~~~~~~~~~l~~Q~~~l~el~~~~~~~k~ei~~~~~~~~~e~~~l~~ 463 (1019)
........|+.....+...++.....++..+. ..+.++..+.+.|..++...|.
T Consensus 714 e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~---~~~~~~~~le~~~~~eL~~~Gv 768 (1201)
T PF12128_consen 714 ELRNELKAQWQELEAELDEQIEQIKQEIAAAKQ---EAKEQLKELEQQYNQELAGKGV 768 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhCCC
Confidence 11223344555555555555544444444443 3445555555566666555553
No 64
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.75 E-value=4.1 Score=52.87 Aligned_cols=43 Identities=14% Similarity=0.009 Sum_probs=25.0
Q ss_pred HHHHHHHHHhCCCCC----cccccccCC-ChhhHHHHHHHHHhhhhcc
Q 001734 92 VKRFLAAMDDMGLPR----FELSDLEQG-NMAPVLQCLRSLRASFSFC 134 (1019)
Q Consensus 92 I~~FL~ac~~~Glp~----F~~~DLE~~-n~~~Vv~cL~aL~~~~~~k 134 (1019)
+.||=..+=.--|-. |.+.==-.| .=+-||+.++=..+|-..+
T Consensus 91 ~~NFKSYaG~~ilGPFHksFtaIvGPNGSGKSNVIDsmLFVFGfRA~k 138 (1293)
T KOG0996|consen 91 VENFKSYAGKQILGPFHKSFTAIVGPNGSGKSNVIDSMLFVFGFRASK 138 (1293)
T ss_pred hhhhhhhcCceeecCCCCCceeeECCCCCCchHHHHHHHHHhhhhHhH
Confidence 367877773332333 555411223 4578999888777776655
No 65
>PRK11637 AmiB activator; Provisional
Probab=95.74 E-value=3.9 Score=48.64 Aligned_cols=21 Identities=33% Similarity=0.653 Sum_probs=10.0
Q ss_pred HcCc-ceeEEeecccCCCCceeeecC
Q 001734 568 LDGY-NVCIFAYGQTGSGKTYTMSGP 592 (1019)
Q Consensus 568 LdG~-N~~IfAYGQTGSGKTyTM~G~ 592 (1019)
+.|| |+.|+-.|. | .+|++|.
T Consensus 356 ~~~~G~~vii~hg~---g-~~t~Y~~ 377 (428)
T PRK11637 356 LQGYGLVVVVEHGK---G-DMSLYGY 377 (428)
T ss_pred cCCcccEEEEEeCC---C-cEEEccC
Confidence 3444 344445442 2 5666663
No 66
>PRK02224 chromosome segregation protein; Provisional
Probab=95.71 E-value=6.5 Score=50.83 Aligned_cols=14 Identities=14% Similarity=0.176 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHhcC
Q 001734 31 QLSTLVEWLNEMIP 44 (1019)
Q Consensus 31 r~~e~~~Wie~vlg 44 (1019)
...++..||..++|
T Consensus 110 ~~~~~~~~i~~llg 123 (880)
T PRK02224 110 GARDVREEVTELLR 123 (880)
T ss_pred ChHHHHHHHHHHHC
Confidence 45678899999988
No 67
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.67 E-value=2 Score=52.12 Aligned_cols=27 Identities=19% Similarity=0.470 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHhhh-----hhhhhhhccC
Q 001734 468 LIDAAEKYHVILAENRR-----LYNEVQDLKG 494 (1019)
Q Consensus 468 l~~~~~~~~~~l~erR~-----L~N~vqelkG 494 (1019)
+.+....|......+|+ +.+.|++++.
T Consensus 251 i~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~ 282 (546)
T KOG0977|consen 251 IREIRAQYEAISRQNRKDIESWYKRKIQEIRT 282 (546)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 34445556666555554 7788888874
No 68
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=95.49 E-value=3 Score=47.33 Aligned_cols=147 Identities=17% Similarity=0.157 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHH-HHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001734 311 VVANQLERIKTEKTNIAQKEKLEEQ-NALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQE 389 (1019)
Q Consensus 311 ~~~~~l~~l~~e~~k~eek~~~~e~-~~~~l~ke~~~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le~~l~e 389 (1019)
.|...|.+|..||..++....-+.+ -|.+|++.......+...+..+|+.+++.--.....||...+-....|-+++..
T Consensus 110 ~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~ 189 (310)
T PF09755_consen 110 DLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDK 189 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666677777766665544332 367888888777777777777777766543334555555555555566666666
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHH-HHHHHhHhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHh
Q 001734 390 LERLLTVSKKKVEELESLSESKSQRW-KRIEHSYQSFMGCQLGVIQDLRVAFESTKHEVLETKKNYSKEFDC 460 (1019)
Q Consensus 390 ~~~~l~~~~~~~~~le~~~~~~~~~~-~~~~~~~~~~l~~Q~~~l~el~~~~~~~k~ei~~~~~~~~~e~~~ 460 (1019)
+..+...+..++..--+.-.+..+.. ...... ..+.=...++.|+..+..+++.+...+..+...+..
T Consensus 190 l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~D---t~e~~~shI~~Lr~EV~RLR~qL~~sq~e~~~k~~~ 258 (310)
T PF09755_consen 190 LEAEKRRLQEKLEQPVSAPPSPRDTVNVSEEND---TAERLSSHIRSLRQEVSRLRQQLAASQQEHSEKMAQ 258 (310)
T ss_pred HHHHHHHHHHHHccccCCCCCcchHHhhcccCC---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666555555443111101111100 000000 011112336677777777777777766665554433
No 69
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.44 E-value=3.8 Score=50.94 Aligned_cols=11 Identities=18% Similarity=0.326 Sum_probs=6.0
Q ss_pred HHHHHHHHHHh
Q 001734 260 RKVVPLIERRT 270 (1019)
Q Consensus 260 ~kvv~e~e~~i 270 (1019)
|++++|=++|=
T Consensus 333 Rq~leeqqqre 343 (1118)
T KOG1029|consen 333 RQALEEQQQRE 343 (1118)
T ss_pred HHHHHHHHHHH
Confidence 55555555553
No 70
>PF06395 CDC24: CDC24 Calponin; InterPro: IPR010481 This is a calponin homology domain.
Probab=95.35 E-value=0.039 Score=51.52 Aligned_cols=72 Identities=22% Similarity=0.482 Sum_probs=54.0
Q ss_pred HHHHHchhhHHHHHHHhhhcCCCccCCCCCCC-----CchhHHHHHHHH-HhCCCCC---cccccc--cCC-ChhhHHHH
Q 001734 56 KLRACLVDGTVLCLVLNKLSPDSVEMGANFEP-----GPANVKRFLAAM-DDMGLPR---FELSDL--EQG-NMAPVLQC 123 (1019)
Q Consensus 56 dl~~~LrdGviLC~L~N~l~Pgsv~k~~~~~~-----~~eNI~~FL~ac-~~~Glp~---F~~~DL--E~~-n~~~Vv~c 123 (1019)
.|-..+|-|.=||-|-|.++|..--.+..... .-..|-.|+.|| .++|+|+ |..+|| +.. .+.||+..
T Consensus 5 ~LW~~fr~G~PLc~lfNal~p~~~L~v~~~~~~~~k~~K~ai~~Fi~ack~~L~~~~~e~FtIsdl~~~dT~gfvKVi~~ 84 (89)
T PF06395_consen 5 QLWKLFRQGYPLCVLFNALQPEEPLPVDPVSSDDLKVCKKAIYKFIQACKQELGFPDEELFTISDLYGDDTNGFVKVIKV 84 (89)
T ss_pred HHHHHHhCcCcHHHHHHccCCccCCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCccceeeeeccccCCCcchhhHHHH
Confidence 57889999999999999999974322211111 012778999999 6899998 999999 333 69999988
Q ss_pred HHHH
Q 001734 124 LRSL 127 (1019)
Q Consensus 124 L~aL 127 (1019)
+..|
T Consensus 85 V~~v 88 (89)
T PF06395_consen 85 VNRV 88 (89)
T ss_pred HHhh
Confidence 7654
No 71
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.34 E-value=5.8 Score=53.73 Aligned_cols=25 Identities=12% Similarity=0.238 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001734 380 KIESQKKLQELERLLTVSKKKVEEL 404 (1019)
Q Consensus 380 k~~le~~l~e~~~~l~~~~~~~~~l 404 (1019)
+..++.++.++..++..+...++++
T Consensus 883 r~~le~~L~el~~el~~l~~~~~~~ 907 (1311)
T TIGR00606 883 RQQFEEQLVELSTEVQSLIREIKDA 907 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555544444
No 72
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.23 E-value=13 Score=47.30 Aligned_cols=43 Identities=19% Similarity=0.071 Sum_probs=23.0
Q ss_pred HHHHHchhhHHHHHHHhhhcCCCccCCCCCCCCchhHHHHHHHHH
Q 001734 56 KLRACLVDGTVLCLVLNKLSPDSVEMGANFEPGPANVKRFLAAMD 100 (1019)
Q Consensus 56 dl~~~LrdGviLC~L~N~l~Pgsv~k~~~~~~~~eNI~~FL~ac~ 100 (1019)
.|+.+.==||||=...-+ .-|+|..+. ||..-+|-..|...-.
T Consensus 30 ~FA~G~WvGVvLDep~GK-NnGsVqg~q-YF~Cd~ncG~FVr~sq 72 (1243)
T KOG0971|consen 30 QFAEGKWVGVVLDEPKGK-NNGSVQGVQ-YFECDENCGVFVRSSQ 72 (1243)
T ss_pred ccccCceEEEEeccccCC-CCCccccee-eEecCCCcceEeehhh
Confidence 356666566666443332 236663332 3443568887776653
No 73
>PRK02224 chromosome segregation protein; Provisional
Probab=95.20 E-value=11 Score=48.74 Aligned_cols=15 Identities=13% Similarity=0.363 Sum_probs=7.8
Q ss_pred cchhhhhcccCCCCC
Q 001734 195 TFHDVLHLKEGGYTD 209 (1019)
Q Consensus 195 ~~~~~~~~~~~~~~~ 209 (1019)
.|...+-+.||.+..
T Consensus 128 ~f~~~~~i~Qge~~~ 142 (880)
T PRK02224 128 AFVNCAYVRQGEVNK 142 (880)
T ss_pred HhcceeEeeccChHH
Confidence 344444456666544
No 74
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.95 E-value=12 Score=45.50 Aligned_cols=89 Identities=18% Similarity=0.216 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHhcCCCCCC--------CCccHHHHHHHchhhHHHHHHHhhhcCCCccCCCCCCCCc-hhHHHHHHHHHh
Q 001734 31 QLSTLVEWLNEMIPHIHLP--------FEASEEKLRACLVDGTVLCLVLNKLSPDSVEMGANFEPGP-ANVKRFLAAMDD 101 (1019)
Q Consensus 31 r~~e~~~Wie~vlg~~~lp--------~~~s~edl~~~LrdGviLC~L~N~l~Pgsv~k~~~~~~~~-eNI~~FL~ac~~ 101 (1019)
=+.++.+-|...|-.-.++ ..|+.-||.+. +-.|-+.|.|+.- |..++ |-|-+||+.
T Consensus 71 ~~s~c~~~I~~fL~engf~~~iS~k~l~~PS~KdF~~i------FkfLY~~Ldp~y~-----f~~r~EeEV~~ilK~--- 136 (581)
T KOG0995|consen 71 YRSQCIRQIYNFLVENGFSHPISIKLLMKPSVKDFIAI------FKFLYGFLDPDYE-----FPERIEEEVVQILKN--- 136 (581)
T ss_pred HHHHHHHHHHHHHHHcCCCCChhhhhcCCCccccHHHH------HHHHHhccCCCcc-----cchhHHHHHHHHHHh---
Confidence 3666666666666322232 23455566643 3356666666543 11112 244444443
Q ss_pred CCCCC-cccccc-c---CCChhhHHHHHHHHHhhhhc
Q 001734 102 MGLPR-FELSDL-E---QGNMAPVLQCLRSLRASFSF 133 (1019)
Q Consensus 102 ~Glp~-F~~~DL-E---~~n~~~Vv~cL~aL~~~~~~ 133 (1019)
+|.|= -.-+-+ - ..+-+.++..|+.|-+....
T Consensus 137 L~YPf~~siSs~~a~gspH~WP~iL~mlhWlvdlI~~ 173 (581)
T KOG0995|consen 137 LKYPFLLSISSLQAAGSPHNWPHILGMLHWLVDLIRI 173 (581)
T ss_pred CCCCcccchhhhccCCCCCccHHHHHHHHHHHHHHHH
Confidence 45553 111222 1 12566777777777666543
No 75
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.92 E-value=12 Score=45.71 Aligned_cols=15 Identities=27% Similarity=0.634 Sum_probs=7.8
Q ss_pred chhhhhcccCCCCCC
Q 001734 196 FHDVLHLKEGGYTDV 210 (1019)
Q Consensus 196 ~~~~~~~~~~~~~~~ 210 (1019)
|....-+.||.|..+
T Consensus 130 f~~~v~l~q~~f~~f 144 (562)
T PHA02562 130 FKQIVVLGTAGYVPF 144 (562)
T ss_pred HhHHheeccCchhhH
Confidence 333344566666554
No 76
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=94.90 E-value=2.6 Score=53.69 Aligned_cols=20 Identities=20% Similarity=0.371 Sum_probs=9.1
Q ss_pred hhHHHHHHHHHHHHHHhhhH
Q 001734 307 EENQVVANQLERIKTEKTNI 326 (1019)
Q Consensus 307 ee~~~~~~~l~~l~~e~~k~ 326 (1019)
+.+..++++|+.+++|-+++
T Consensus 198 enll~lr~eLddleae~~kl 217 (1195)
T KOG4643|consen 198 ENLLRLRNELDDLEAEISKL 217 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444445555544444433
No 77
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=94.87 E-value=6.2 Score=42.69 Aligned_cols=115 Identities=16% Similarity=0.189 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHhhhhhHHHhhhhhHHHhhHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 001734 257 CLLRKVVPLIERRTATQYQNFKNQNNLFRAREEKYKSRIRVLETLTVGTTEENQVVANQLERIKTEKTNIAQKEKLEEQN 336 (1019)
Q Consensus 257 ~~l~kvv~e~e~~is~q~~~~~~q~~~~~~~~~~~~~~~~~le~l~~~~~ee~~~~~~~l~~l~~e~~k~eek~~~~e~~ 336 (1019)
.-+++||.|||+.|+.-.+....+ -+.....+.++..|+..+.+.....+..
T Consensus 40 ~~m~~i~~e~Ek~i~~~i~e~~~~----------------------------~~~~~~~i~~~~~erdq~~~dL~s~E~s 91 (207)
T PF05010_consen 40 QEMRKIMEEYEKTIAQMIEEKQKQ----------------------------KELSEAEIQKLLKERDQAYADLNSLEKS 91 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh----------------------------HHhHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 356788888888776544322111 1112223334444555555555555666
Q ss_pred HHHhhhcccchhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001734 337 ALRLKKENDDRDIEISTLKQDLELAKRT---HELHCLQLEEQIYETKIESQKKLQELERLLTVSKK 399 (1019)
Q Consensus 337 ~~~l~ke~~~~~~e~~~Lk~ele~~k~~---~e~~~~~le~~~~~~k~~le~~l~e~~~~l~~~~~ 399 (1019)
+..|++.-+.....+..++..=+.++++ |.....+.+.....++...+.+|.-...++..++.
T Consensus 92 fsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~ 157 (207)
T PF05010_consen 92 FSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRS 157 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666555566666555555544 34444445555555555555555555444444443
No 78
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.86 E-value=12 Score=48.86 Aligned_cols=34 Identities=24% Similarity=0.359 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhhhhhHHHhhhhhHHHhhHHHH
Q 001734 258 LLRKVVPLIERRTATQYQNFKNQNNLFRAREEKY 291 (1019)
Q Consensus 258 ~l~kvv~e~e~~is~q~~~~~~q~~~~~~~~~~~ 291 (1019)
+-.+-..-||...-.-.+-|...|++++.+...+
T Consensus 292 ~~e~ek~~lE~~k~~al~fL~kenel~~~~~~~~ 325 (1293)
T KOG0996|consen 292 LVEKEKKALEGPKNEALEFLKKENELFRKKNKLC 325 (1293)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445566666655666666666665555544
No 79
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=94.86 E-value=7.9 Score=48.43 Aligned_cols=18 Identities=11% Similarity=-0.071 Sum_probs=7.8
Q ss_pred HHhhhHHHHHHHHHHHHH
Q 001734 321 TEKTNIAQKEKLEEQNAL 338 (1019)
Q Consensus 321 ~e~~k~eek~~~~e~~~~ 338 (1019)
.|++..++.-+...+++.
T Consensus 284 ~ElSqkeelVk~~qeeLd 301 (1265)
T KOG0976|consen 284 DELSQKEELVKELQEELD 301 (1265)
T ss_pred hhhhHHHHHHHHHHHHHH
Confidence 444444444443333333
No 80
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=94.83 E-value=9.1 Score=43.35 Aligned_cols=25 Identities=20% Similarity=0.427 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHHHHHHhhhHHHHHH
Q 001734 307 EENQVVANQLERIKTEKTNIAQKEK 331 (1019)
Q Consensus 307 ee~~~~~~~l~~l~~e~~k~eek~~ 331 (1019)
++...+.+++++++.++..+-.+..
T Consensus 62 ~~rdeineev~elK~kR~ein~kl~ 86 (294)
T COG1340 62 EERDEINEEVQELKEKRDEINAKLQ 86 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555554444433
No 81
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=94.75 E-value=3.8 Score=50.82 Aligned_cols=39 Identities=18% Similarity=0.310 Sum_probs=22.5
Q ss_pred HHHhhhcCCCc---cCCCCCCCCch---hHHH-HHHHHHhCCCCC---ccc
Q 001734 69 LVLNKLSPDSV---EMGANFEPGPA---NVKR-FLAAMDDMGLPR---FEL 109 (1019)
Q Consensus 69 ~L~N~l~Pgsv---~k~~~~~~~~e---NI~~-FL~ac~~~Glp~---F~~ 109 (1019)
+.++.|.|+.. |...+ +.|. +|.. .-.+|.++|.+. |++
T Consensus 40 ~cL~~I~p~~~~~l~~~lP--~~msaRfr~~~~lA~~~k~lGy~~digyq~ 88 (594)
T PF05667_consen 40 RCLRVIDPSLGSSLPRSLP--PGMSARFRVGTSLAQACKELGYRGDIGYQT 88 (594)
T ss_pred HHHHHhCccccCCCcccCC--hHHHHHHHHHHHHHHHHHHcCCCCCCcchh
Confidence 45788888763 22222 2232 4443 445778999887 555
No 82
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.63 E-value=7.1 Score=49.48 Aligned_cols=32 Identities=28% Similarity=0.459 Sum_probs=22.1
Q ss_pred HHHHHHHhhhcccchhHHHHHHHHHHHHHHHH
Q 001734 333 EEQNALRLKKENDDRDIEISTLKQDLELAKRT 364 (1019)
Q Consensus 333 ~e~~~~~l~ke~~~~~~e~~~Lk~ele~~k~~ 364 (1019)
+.++..++.||+|....|+..|+..-|.+++.
T Consensus 394 ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~ 425 (1243)
T KOG0971|consen 394 EKQDHQKLQKELEKKNSELEELRRQKERLSRE 425 (1243)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34556677788888888887777766665543
No 83
>PRK03918 chromosome segregation protein; Provisional
Probab=94.59 E-value=20 Score=46.29 Aligned_cols=15 Identities=27% Similarity=0.275 Sum_probs=9.0
Q ss_pred cccCCCCcccccccc
Q 001734 978 LSDISDGGLTMGTET 992 (1019)
Q Consensus 978 ~~~~~~~~~~~~~~~ 992 (1019)
+.++.|-++.|.-..
T Consensus 856 ~~~~~d~~~~l~~~~ 870 (880)
T PRK03918 856 LKDAADYVIRVSLEG 870 (880)
T ss_pred HHHhCCeEEEEEecC
Confidence 445677777775443
No 84
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=94.46 E-value=6 Score=54.01 Aligned_cols=82 Identities=30% Similarity=0.373 Sum_probs=34.7
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001734 316 LERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLT 395 (1019)
Q Consensus 316 l~~l~~e~~k~eek~~~~e~~~~~l~ke~~~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le~~l~e~~~~l~ 395 (1019)
+..+..|.+.+.+.+++....-.+|..+.+..-.|...|..-+..++-.++. ++......+..++.++++++..++
T Consensus 740 ~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~----~e~s~~~~k~~~e~~i~eL~~el~ 815 (1822)
T KOG4674|consen 740 LEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNE----LEESEMATKDKCESRIKELERELQ 815 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444445444444555555554444444433333332222211 111122334444555555555555
Q ss_pred HHHHHH
Q 001734 396 VSKKKV 401 (1019)
Q Consensus 396 ~~~~~~ 401 (1019)
.+++++
T Consensus 816 ~lk~kl 821 (1822)
T KOG4674|consen 816 KLKKKL 821 (1822)
T ss_pred HHHHHH
Confidence 544443
No 85
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.45 E-value=2.7 Score=46.25 Aligned_cols=94 Identities=21% Similarity=0.273 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001734 308 ENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKL 387 (1019)
Q Consensus 308 e~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~l~ke~~~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le~~l 387 (1019)
+.+.+.++..++..+..++.++.+-.+..+. .....+|..+|..++..+++.-.....++.. ..+...+++.++
T Consensus 53 e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~-----~v~~~~e~~aL~~E~~~ak~r~~~le~el~~-l~~~~~~l~~~i 126 (239)
T COG1579 53 ELEDLENQVSQLESEIQEIRERIKRAEEKLS-----AVKDERELRALNIEIQIAKERINSLEDELAE-LMEEIEKLEKEI 126 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 4455555555555555555555544443221 1122344445555554444332221112111 122344555555
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 001734 388 QELERLLTVSKKKVEELESL 407 (1019)
Q Consensus 388 ~e~~~~l~~~~~~~~~le~~ 407 (1019)
.+++..+..+.+.+.+.++.
T Consensus 127 ~~l~~~~~~~e~~~~e~~~~ 146 (239)
T COG1579 127 EDLKERLERLEKNLAEAEAR 146 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555554443
No 86
>PRK04863 mukB cell division protein MukB; Provisional
Probab=94.38 E-value=9.6 Score=52.06 Aligned_cols=50 Identities=10% Similarity=0.082 Sum_probs=23.8
Q ss_pred HHHHHHHhhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhccCC
Q 001734 446 EVLETKKNYSKEFDCLGLNLKRLIDAAEKYHVILAENRRLYNEVQDLKGN 495 (1019)
Q Consensus 446 ei~~~~~~~~~e~~~l~~~l~~l~~~~~~~~~~l~erR~L~N~vqelkGn 495 (1019)
++..+...|...+..+...+..+..........+..-++-++.+.-..|.
T Consensus 439 eLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gk 488 (1486)
T PRK04863 439 NAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGE 488 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34444444444444444444444444444444444445555555555554
No 87
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=94.38 E-value=4.5 Score=42.87 Aligned_cols=56 Identities=11% Similarity=0.316 Sum_probs=37.6
Q ss_pred hhhhHHHHHHHHhHhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHhhhhh
Q 001734 409 ESKSQRWKRIEHSYQSFMGCQLGVIQDLRVAFESTKHEVLETKKNYSKEFDCLGLN 464 (1019)
Q Consensus 409 ~~~~~~~~~~~~~~~~~l~~Q~~~l~el~~~~~~~k~ei~~~~~~~~~e~~~l~~~ 464 (1019)
..+...|...+..+..++......+-.|=..+..++.....++.....++..++..
T Consensus 119 ~~ke~~~~~ee~~~~~y~~~eh~rll~LWr~v~~lRr~f~elr~~TerdL~~~r~e 174 (182)
T PF15035_consen 119 EQKEAEWREEEENFNQYLSSEHSRLLSLWREVVALRRQFAELRTATERDLSDMRAE 174 (182)
T ss_pred HHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 34556677777778888877777777776667777777776666666665555443
No 88
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.35 E-value=9.5 Score=43.86 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHhhhhccchhhHHH
Q 001734 287 REEKYKSRIRVLETLTVGTTEENQV 311 (1019)
Q Consensus 287 ~~~~~~~~~~~le~l~~~~~ee~~~ 311 (1019)
+..=|.=|.+.++.|..+..+..+.
T Consensus 136 K~~WYeWR~~ll~gl~~~L~~~~~~ 160 (325)
T PF08317_consen 136 KKMWYEWRMQLLEGLKEGLEENLEL 160 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555555555554444444333
No 89
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=94.28 E-value=19 Score=44.73 Aligned_cols=72 Identities=15% Similarity=0.219 Sum_probs=45.0
Q ss_pred HHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
Q 001734 332 LEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKI----------ESQKKLQELERLLTVSKKKV 401 (1019)
Q Consensus 332 ~~e~~~~~l~ke~~~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~----------~le~~l~e~~~~l~~~~~~~ 401 (1019)
.-.....+++++.++...+...|+.+|+.++...+..-.+++.+..+.+. ..+++++-+++.+..++++|
T Consensus 524 ~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqv 603 (786)
T PF05483_consen 524 NSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQV 603 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 33444567788888888888888999988887766666555554433222 23445555555555555555
Q ss_pred HH
Q 001734 402 EE 403 (1019)
Q Consensus 402 ~~ 403 (1019)
+.
T Consensus 604 En 605 (786)
T PF05483_consen 604 EN 605 (786)
T ss_pred HH
Confidence 53
No 90
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=94.22 E-value=22 Score=46.89 Aligned_cols=17 Identities=41% Similarity=0.620 Sum_probs=13.5
Q ss_pred HHHHHHch---hhHHHHHHH
Q 001734 55 EKLRACLV---DGTVLCLVL 71 (1019)
Q Consensus 55 edl~~~Lr---dGviLC~L~ 71 (1019)
.||..||+ ||+|.|..+
T Consensus 217 ADFGsClkm~~dG~V~s~~a 236 (1317)
T KOG0612|consen 217 ADFGSCLKMDADGTVRSSVA 236 (1317)
T ss_pred ccchhHHhcCCCCcEEeccc
Confidence 47888875 999999865
No 91
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=94.20 E-value=26 Score=45.90 Aligned_cols=17 Identities=12% Similarity=0.380 Sum_probs=7.5
Q ss_pred hhhhhhhhhccCCEEEE
Q 001734 483 RRLYNEVQDLKGNIRVY 499 (1019)
Q Consensus 483 R~L~N~vqelkGnIrV~ 499 (1019)
+++-.-++++++.+.+|
T Consensus 1738 ~r~~~vl~~I~~rv~~y 1754 (1758)
T KOG0994|consen 1738 KRVESVLDHINERVLYY 1754 (1758)
T ss_pred HHHHHHHHHHhhhhhhh
Confidence 33334444445544444
No 92
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=94.17 E-value=1 Score=44.60 Aligned_cols=78 Identities=19% Similarity=0.270 Sum_probs=50.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhhhcccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001734 315 QLERIKTEKTNIAQKEKLEEQNALRLKKENDD---RDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELE 391 (1019)
Q Consensus 315 ~l~~l~~e~~k~eek~~~~e~~~~~l~ke~~~---~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le~~l~e~~ 391 (1019)
++..++.+...++..+....+++.+|+.+.+. ...++..|+.+++.++..|..-..-+-.+.+ ...+|+.++.|++
T Consensus 31 E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E-~veEL~~Dv~DlK 109 (120)
T PF12325_consen 31 ELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSE-EVEELRADVQDLK 109 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH-HHHHHHHHHHHHH
Confidence 44445555556666677777888999998864 4467778888888888888876666555432 2334444444444
Q ss_pred HH
Q 001734 392 RL 393 (1019)
Q Consensus 392 ~~ 393 (1019)
.+
T Consensus 110 ~m 111 (120)
T PF12325_consen 110 EM 111 (120)
T ss_pred HH
Confidence 33
No 93
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.09 E-value=9.5 Score=45.12 Aligned_cols=71 Identities=23% Similarity=0.284 Sum_probs=39.2
Q ss_pred HHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 001734 332 LEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQ--KKLQELERLLTVSKKKVE 402 (1019)
Q Consensus 332 ~~e~~~~~l~ke~~~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le--~~l~e~~~~l~~~~~~~~ 402 (1019)
-.+.++.+|+.-....+..+.+|+++-+..|........+|....+..+.+-+ .++++++..|+....+++
T Consensus 290 dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e~~~IqeleqdL~a~~eei~ 362 (521)
T KOG1937|consen 290 DGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETEDEEIRRIQELEQDLEAVDEEIE 362 (521)
T ss_pred ChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777777777777666554444444333221111111 345555555555555544
No 94
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=94.05 E-value=26 Score=45.73 Aligned_cols=16 Identities=13% Similarity=0.260 Sum_probs=10.6
Q ss_pred EEecCHHHHHHHHHhh
Q 001734 669 YSVQSTADVLELMNIG 684 (1019)
Q Consensus 669 ~vv~s~edv~~ll~~g 684 (1019)
..+.+-.++..+|..+
T Consensus 600 lLiEdk~Ea~~~m~s~ 615 (1074)
T KOG0250|consen 600 LLIEDKKEAREFMQSD 615 (1074)
T ss_pred EEecchHHHHHHHhcC
Confidence 3445557888888765
No 95
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=93.95 E-value=3.5 Score=52.37 Aligned_cols=95 Identities=22% Similarity=0.306 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001734 311 VVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQEL 390 (1019)
Q Consensus 311 ~~~~~l~~l~~e~~k~eek~~~~e~~~~~l~ke~~~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le~~l~e~ 390 (1019)
.+..+++.++.++.+++.......+++..++......+..+..|+.+|+.+++.-..-..+++.. +.....++.++.++
T Consensus 593 el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~-~e~~e~le~~~~~~ 671 (769)
T PF05911_consen 593 ELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAM-KESYESLETRLKDL 671 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhHH
Confidence 44556666677776666655555566666666666677778888888888877655555555544 33455667777777
Q ss_pred HHHHHHHHHHHHHHHH
Q 001734 391 ERLLTVSKKKVEELES 406 (1019)
Q Consensus 391 ~~~l~~~~~~~~~le~ 406 (1019)
+.++..+..++..|+.
T Consensus 672 e~E~~~l~~Ki~~Le~ 687 (769)
T PF05911_consen 672 EAEAEELQSKISSLEE 687 (769)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777777776654
No 96
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=93.81 E-value=21 Score=49.06 Aligned_cols=47 Identities=17% Similarity=0.263 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHHHHH
Q 001734 433 IQDLRVAFESTKHEVLETKKNYSKEFDCLGLNLKRLIDAAEKYHVIL 479 (1019)
Q Consensus 433 l~el~~~~~~~k~ei~~~~~~~~~e~~~l~~~l~~l~~~~~~~~~~l 479 (1019)
+..++..+......+...+.+|..++-..+.-.+.|....+.|+...
T Consensus 1027 ~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~ 1073 (1822)
T KOG4674|consen 1027 IEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCN 1073 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555556677777777666666666666666555543
No 97
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=93.77 E-value=25 Score=45.88 Aligned_cols=29 Identities=24% Similarity=0.613 Sum_probs=17.0
Q ss_pred cchHHH---HHHHHHhHhhhhcCCCCchHHHHHHHHHH
Q 001734 229 TKSLFN---IVNRILDECVERKNGDAPHRVACLLRKVV 263 (1019)
Q Consensus 229 ~~~l~~---~~~~~l~~~~~~~~~~~~~~~~~~l~kvv 263 (1019)
-|||+. |+|++.+ +-++||+| ++-|-...
T Consensus 320 NqSLLTLGRVInALVe-----~s~HIPYR-ESKLTRLL 351 (1041)
T KOG0243|consen 320 NQSLLTLGRVINALVE-----HSGHIPYR-ESKLTRLL 351 (1041)
T ss_pred hHHHHHHHHHHHHHHc-----cCCCCCch-HHHHHHHH
Confidence 367774 5555544 46799997 44444333
No 98
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=93.70 E-value=10 Score=41.81 Aligned_cols=13 Identities=8% Similarity=0.041 Sum_probs=4.8
Q ss_pred cchhhHHHHHHHH
Q 001734 304 GTTEENQVVANQL 316 (1019)
Q Consensus 304 ~~~ee~~~~~~~l 316 (1019)
...+++..+.+++
T Consensus 28 ~~~~~l~k~~~e~ 40 (239)
T COG1579 28 EIRKALKKAKAEL 40 (239)
T ss_pred hhHHHHHHHHHHH
Confidence 3333333333333
No 99
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.70 E-value=22 Score=45.83 Aligned_cols=18 Identities=17% Similarity=0.248 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhhhhhH
Q 001734 258 LLRKVVPLIERRTATQYQ 275 (1019)
Q Consensus 258 ~l~kvv~e~e~~is~q~~ 275 (1019)
-+..+++.||-|+.+--+
T Consensus 188 kI~ell~yieerLreLEe 205 (1200)
T KOG0964|consen 188 KINELLKYIEERLRELEE 205 (1200)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456677778888776443
No 100
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=93.62 E-value=15 Score=41.39 Aligned_cols=31 Identities=19% Similarity=0.188 Sum_probs=16.9
Q ss_pred hhhhhHHHhhhhhHHHhhHHHHHHHHHHHhh
Q 001734 270 TATQYQNFKNQNNLFRAREEKYKSRIRVLET 300 (1019)
Q Consensus 270 is~q~~~~~~q~~~~~~~~~~~~~~~~~le~ 300 (1019)
+-.+.+.++...+-|+.+.+.-...+..++.
T Consensus 73 l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~ 103 (312)
T PF00038_consen 73 LELEIDNLKEELEDLRRKYEEELAERKDLEE 103 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666655444444443
No 101
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=93.48 E-value=13 Score=45.92 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHH
Q 001734 329 KEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHE 366 (1019)
Q Consensus 329 k~~~~e~~~~~l~ke~~~~~~e~~~Lk~ele~~k~~~e 366 (1019)
.++.-+++..++.+-..+....+..|+.+++.++..|.
T Consensus 304 A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~ 341 (569)
T PRK04778 304 ARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYT 341 (569)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 34445566667777777777888888888888887765
No 102
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.48 E-value=28 Score=43.86 Aligned_cols=15 Identities=20% Similarity=0.164 Sum_probs=6.5
Q ss_pred CCcCCCCCCcceEEE
Q 001734 694 ALNERSSRSHSILTI 708 (1019)
Q Consensus 694 ~~N~~SSRSH~IftI 708 (1019)
+-|+-|---|=++++
T Consensus 826 ke~dLsFskgd~I~V 840 (1118)
T KOG1029|consen 826 KENDLSFSKGDTITV 840 (1118)
T ss_pred ccccccccCCCeeee
Confidence 334444334444443
No 103
>PRK03918 chromosome segregation protein; Provisional
Probab=93.40 E-value=18 Score=46.65 Aligned_cols=12 Identities=42% Similarity=1.077 Sum_probs=7.0
Q ss_pred HHHHHHHHHhcC
Q 001734 33 STLVEWLNEMIP 44 (1019)
Q Consensus 33 ~e~~~Wie~vlg 44 (1019)
.++..||..++|
T Consensus 111 ~~~~~~i~~~~~ 122 (880)
T PRK03918 111 SSVREWVERLIP 122 (880)
T ss_pred HHHHHHHHHhcC
Confidence 355566666555
No 104
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=93.37 E-value=13 Score=47.46 Aligned_cols=61 Identities=20% Similarity=0.335 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCEEEE
Q 001734 432 VIQDLRVAFESTKHEVLETKKNYSKEFDCLGLNLKRLIDAAEKYHVILAENRRLYNEVQDLKGNIRVY 499 (1019)
Q Consensus 432 ~l~el~~~~~~~k~ei~~~~~~~~~e~~~l~~~l~~l~~~~~~~~~~l~erR~L~N~vqelkGnIrV~ 499 (1019)
.+.+|...+..++.++..+..... .--..|.+.-......-.+||+.-.++-+||.--.+.
T Consensus 665 qleeL~~~l~k~~~Eld~l~~qL~-------ssq~~L~e~d~~L~~le~Errk~lEE~l~mKqeal~a 725 (775)
T PF10174_consen 665 QLEELEAALEKLRQELDQLKAQLE-------SSQQSLMERDQELNALEAERRKQLEEVLEMKQEALLA 725 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 455666666666655544432111 1111233333334445568999999999999644443
No 105
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=93.13 E-value=17 Score=40.53 Aligned_cols=75 Identities=25% Similarity=0.346 Sum_probs=41.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
Q 001734 315 QLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHEL--------HCLQLEEQIYETKIESQKK 386 (1019)
Q Consensus 315 ~l~~l~~e~~k~eek~~~~e~~~~~l~ke~~~~~~e~~~Lk~ele~~k~~~e~--------~~~~le~~~~~~k~~le~~ 386 (1019)
++++.+.|.+.|+++. +.++..|.++.+..+..|....+||..+. +|.. ++..|..+....+...+..
T Consensus 64 ~l~~ak~eLqe~eek~---e~~l~~Lq~ql~~l~akI~k~~~el~~L~-TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdE 139 (258)
T PF15397_consen 64 QLQQAKAELQEWEEKE---ESKLSKLQQQLEQLDAKIQKTQEELNFLS-TYKDHEYPVKAVQIANLVRQLQQLKDSQQDE 139 (258)
T ss_pred HHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566643 55667777777777777777777776654 2332 2444444444444444444
Q ss_pred HHHHHHH
Q 001734 387 LQELERL 393 (1019)
Q Consensus 387 l~e~~~~ 393 (1019)
+.++...
T Consensus 140 ldel~e~ 146 (258)
T PF15397_consen 140 LDELNEM 146 (258)
T ss_pred HHHHHHH
Confidence 4444333
No 106
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.13 E-value=15 Score=42.08 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHhhhhccchhhHHHH
Q 001734 286 AREEKYKSRIRVLETLTVGTTEENQVV 312 (1019)
Q Consensus 286 ~~~~~~~~~~~~le~l~~~~~ee~~~~ 312 (1019)
++..=|.=|.+.++.|..+-.+..+.+
T Consensus 130 ak~~WYeWR~kllegLk~~L~~~~~~l 156 (312)
T smart00787 130 AKKMWYEWRMKLLEGLKEGLDENLEGL 156 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556666666555554444433
No 107
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=93.07 E-value=13 Score=39.64 Aligned_cols=94 Identities=13% Similarity=0.102 Sum_probs=47.2
Q ss_pred HHHHHHHhhhhhHHHhhhhhHHHhhHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 001734 263 VPLIERRTATQYQNFKNQNNLFRAREEKYKSRIRVLETLTVGTTEENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKK 342 (1019)
Q Consensus 263 v~e~e~~is~q~~~~~~q~~~~~~~~~~~~~~~~~le~l~~~~~ee~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~l~k 342 (1019)
++|..+++......|+.|.....-.-.. ++--.+|++.+...+..+..+..++-...+..|.+--+|.+
T Consensus 34 ~ee~na~L~~e~~~L~~q~~s~Qqal~~-----------aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~ 102 (193)
T PF14662_consen 34 AEEGNAQLAEEITDLRKQLKSLQQALQK-----------AKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVA 102 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666654433222222 22334555555555555554444444444444444455555
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHH
Q 001734 343 ENDDRDIEISTLKQDLELAKRTHEL 367 (1019)
Q Consensus 343 e~~~~~~e~~~Lk~ele~~k~~~e~ 367 (1019)
+++..+.|...|..+.+-+++.++.
T Consensus 103 ~i~~Lqeen~kl~~e~~~lk~~~~e 127 (193)
T PF14662_consen 103 EIETLQEENGKLLAERDGLKKRSKE 127 (193)
T ss_pred HHHHHHHHHhHHHHhhhhHHHHHHH
Confidence 5555555555555555554444443
No 108
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=93.05 E-value=18 Score=42.16 Aligned_cols=104 Identities=18% Similarity=0.215 Sum_probs=54.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH----HHHHhhhhh-----
Q 001734 347 RDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIE------SQKKLQELERLLTVSKKKVE----ELESLSESK----- 411 (1019)
Q Consensus 347 ~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~------le~~l~e~~~~l~~~~~~~~----~le~~~~~~----- 411 (1019)
+..|+.+++.||+.+-+.|.+.|+++-.-+..++++ -.+..+++....+++-+++. .|..+..+.
T Consensus 419 yleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtlltgdGgGtG 498 (593)
T KOG4807|consen 419 YLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEITRLRTLLTGDGGGTG 498 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHhccCCCCCC
Confidence 456888999999999999999998876544433221 12223333333343333322 222221110
Q ss_pred ---hHHHHHHHHhHhhHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Q 001734 412 ---SQRWKRIEHSYQSFMGCQLGVIQDLRVAFESTKHEVLETKK 452 (1019)
Q Consensus 412 ---~~~~~~~~~~~~~~l~~Q~~~l~el~~~~~~~k~ei~~~~~ 452 (1019)
.+.-... .+.-+|..-...||-|+..+..+|.+++.+++
T Consensus 499 splaqgkday--ELEVLLRVKEsEiQYLKqEissLkDELQtalr 540 (593)
T KOG4807|consen 499 SPLAQGKDAY--ELEVLLRVKESEIQYLKQEISSLKDELQTALR 540 (593)
T ss_pred CccccCcchh--hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0000001 12223333445577777777778777766653
No 109
>PRK09039 hypothetical protein; Validated
Probab=92.96 E-value=9.1 Score=44.44 Aligned_cols=13 Identities=15% Similarity=0.342 Sum_probs=6.7
Q ss_pred HHHHHHHHHhHhh
Q 001734 232 LFNIVNRILDECV 244 (1019)
Q Consensus 232 l~~~~~~~l~~~~ 244 (1019)
+|+|+.-.|++-|
T Consensus 36 ~f~~~q~fLs~~i 48 (343)
T PRK09039 36 VFVVAQFFLSREI 48 (343)
T ss_pred HHHHHHHHHHHHH
Confidence 3455555555543
No 110
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.95 E-value=35 Score=44.24 Aligned_cols=20 Identities=20% Similarity=-0.041 Sum_probs=12.4
Q ss_pred HHHHHchhhHHHHHHHhhhc
Q 001734 56 KLRACLVDGTVLCLVLNKLS 75 (1019)
Q Consensus 56 dl~~~LrdGviLC~L~N~l~ 75 (1019)
+......++.-||.-...+.
T Consensus 480 ~~~~l~~~~~~lk~~~~~l~ 499 (1174)
T KOG0933|consen 480 RRAKLHEDIGRLKDELDRLL 499 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34456667777777666554
No 111
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=92.95 E-value=0.14 Score=61.22 Aligned_cols=94 Identities=22% Similarity=0.256 Sum_probs=58.9
Q ss_pred eeeeceeeCCCCChHHHHhchHHHHHHHHcCcceeEEeecccCCCCceeeecCCCCCCCccchh----HHHHHHHHHHHh
Q 001734 540 LFKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVN----YRALNDLFEISE 615 (1019)
Q Consensus 540 ~F~FD~VF~~~atQeeVf~~~~pLV~svLdG~N~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIi----pRal~~LF~~~~ 615 (1019)
.|....-|.|.-.|-.- +..||+.+-.|.-.- .-.|.|||||||||---- .....|-++ --...+||...+
T Consensus 4 ~F~l~s~f~PaGDQP~A---I~~Lv~gi~~g~~~Q-tLLGvTGSGKTfT~AnVI-~~~~rPtLV~AhNKTLAaQLy~Efk 78 (663)
T COG0556 4 PFKLHSPFKPAGDQPEA---IAELVEGIENGLKHQ-TLLGVTGSGKTFTMANVI-AKVQRPTLVLAHNKTLAAQLYSEFK 78 (663)
T ss_pred ceEeccCCCCCCCcHHH---HHHHHHHHhcCceee-EEeeeccCCchhHHHHHH-HHhCCCeEEEecchhHHHHHHHHHH
Confidence 47777778888888542 366777766665443 357999999999995410 000011111 124556776666
Q ss_pred hccCCceEEEEEEEEEEecceee
Q 001734 616 SRKNSILYEVGVQMVEIYNEQVR 638 (1019)
Q Consensus 616 ~~~~~~~~~V~vS~lEIYnE~V~ 638 (1019)
.--........|||+--|.-.-|
T Consensus 79 ~fFP~NaVEYFVSYYDYYQPEAY 101 (663)
T COG0556 79 EFFPENAVEYFVSYYDYYQPEAY 101 (663)
T ss_pred HhCcCcceEEEeeeccccCcccc
Confidence 55555667789999999975543
No 112
>PRK04863 mukB cell division protein MukB; Provisional
Probab=92.88 E-value=52 Score=45.35 Aligned_cols=42 Identities=7% Similarity=-0.005 Sum_probs=20.8
Q ss_pred HHHHHHhHhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhHH
Q 001734 415 WKRIEHSYQSFMGCQLGVIQDLRVAFESTKHEVLETKKNYSK 456 (1019)
Q Consensus 415 ~~~~~~~~~~~l~~Q~~~l~el~~~~~~~k~ei~~~~~~~~~ 456 (1019)
++.....+...+......+.+++..+...+..+....+.|..
T Consensus 440 Le~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~ 481 (1486)
T PRK04863 440 AEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQL 481 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555444455555555555555555444444433
No 113
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=92.87 E-value=16 Score=39.27 Aligned_cols=80 Identities=16% Similarity=0.196 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHh
Q 001734 381 IESQKKLQELERLLTVSKKKVEELESLSESKSQRWKRIEHSYQSFMGCQLGVIQDLRVAFESTKHEVLETKKNYSKEFDC 460 (1019)
Q Consensus 381 ~~le~~l~e~~~~l~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~l~~Q~~~l~el~~~~~~~k~ei~~~~~~~~~e~~~ 460 (1019)
..+++++++.+.++...+..++.|..+...+.-.- ...++.-|+.-...+++-...+..+...+.-..+.|..++..
T Consensus 85 r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~e---ReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~ 161 (194)
T PF15619_consen 85 RELERKLKDKDEELLKTKDELKHLKKLSEDKNLAE---REELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLAS 161 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34566777777777777777777777654433110 122233333333334444444555555555566666666544
Q ss_pred hhh
Q 001734 461 LGL 463 (1019)
Q Consensus 461 l~~ 463 (1019)
-..
T Consensus 162 e~k 164 (194)
T PF15619_consen 162 EKK 164 (194)
T ss_pred HHH
Confidence 333
No 114
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=92.85 E-value=0.083 Score=66.53 Aligned_cols=42 Identities=29% Similarity=0.533 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHhcCCCCCCCCccHHHHHHHchhhHHHHHHHhhhcCCCc
Q 001734 31 QLSTLVEWLNEMIPHIHLPFEASEEKLRACLVDGTVLCLVLNKLSPDSV 79 (1019)
Q Consensus 31 r~~e~~~Wie~vlg~~~lp~~~s~edl~~~LrdGviLC~L~N~l~Pgsv 79 (1019)
.-.-++.||..+ + ..-|.. + ..-|.|||+|-.++..|.|...
T Consensus 8 l~~~Lv~Wv~tf-~-~~~~~~-~----~~dL~DGv~L~evL~qIDp~~F 49 (713)
T PF05622_consen 8 LCDSLVTWVQTF-N-LSAPCS-S----YEDLSDGVALAEVLHQIDPEYF 49 (713)
T ss_dssp HHHHHHHHHTT-----SS----S----HHHHTTSHHHHHHHHHH-TTTS
T ss_pred HHHHHHHHHHHC-C-CCCCcC-C----HHHccchHHHHHHHHHhCcccc
Confidence 445689999874 3 222222 2 4467799999999999999754
No 115
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=92.83 E-value=3.8 Score=45.52 Aligned_cols=26 Identities=35% Similarity=0.486 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhcc
Q 001734 468 LIDAAEKYHVILAENRRLYNEVQDLK 493 (1019)
Q Consensus 468 l~~~~~~~~~~l~erR~L~N~vqelk 493 (1019)
..+..++|.+.+++|++|.-+|.-|.
T Consensus 164 ~e~L~ekynkeveerkrle~e~k~lq 189 (307)
T PF10481_consen 164 YEELQEKYNKEVEERKRLEAEVKALQ 189 (307)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 45668899999999999999887776
No 116
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=92.74 E-value=11 Score=38.54 Aligned_cols=66 Identities=29% Similarity=0.356 Sum_probs=37.6
Q ss_pred HHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001734 337 ALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLTVSKKKVEELESLSES 410 (1019)
Q Consensus 337 ~~~l~ke~~~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le~~l~e~~~~l~~~~~~~~~le~~~~~ 410 (1019)
-..+..+.+....++.+|+++++.+...-.....+|.+- .....++...++..+.+|.+|+.....
T Consensus 40 ~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l--------~sEk~~L~k~lq~~q~kv~eLE~~~~~ 105 (140)
T PF10473_consen 40 KECLILDAENSKAEIETLEEELEELTSELNQLELELDTL--------RSEKENLDKELQKKQEKVSELESLNSS 105 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 334455556677778888888777665444433343332 222344555666666677777665433
No 117
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=92.71 E-value=32 Score=42.48 Aligned_cols=161 Identities=19% Similarity=0.223 Sum_probs=75.3
Q ss_pred HHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001734 319 IKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELA-KRTHELHCLQLEEQIYETKIESQKKLQELERLLTVS 397 (1019)
Q Consensus 319 l~~e~~k~eek~~~~e~~~~~l~ke~~~~~~e~~~Lk~ele~~-k~~~e~~~~~le~~~~~~k~~le~~l~e~~~~l~~~ 397 (1019)
|+.+...+.++....+..+..|....++.+.+...++...+.- --.+.+-..=| .+ -+.-++++.+++.+.+.+
T Consensus 187 L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim----~e-Le~aq~ri~~lE~e~e~L 261 (629)
T KOG0963|consen 187 LKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIM----TE-LEDAQQRIVFLEREVEQL 261 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHH----HH-HHHHHHHHHHHHHHHHHH
Confidence 5555566666666666666666666555555555444432110 00011000000 00 112245556666666666
Q ss_pred HHHHHHHHHhh-hhhhHHHHHHHHhHhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHH
Q 001734 398 KKKVEELESLS-ESKSQRWKRIEHSYQSFMGCQLGVIQDLRVAFESTKHEVLETKKNYSKEFDCLGLNLKRLIDAAEKYH 476 (1019)
Q Consensus 398 ~~~~~~le~~~-~~~~~~~~~~~~~~~~~l~~Q~~~l~el~~~~~~~k~ei~~~~~~~~~e~~~l~~~l~~l~~~~~~~~ 476 (1019)
+.++.....-. ..+.... ...-..+..=...|+.|-..++.++.-+.+....+..+++.|..+++......+...
T Consensus 262 ~~ql~~~N~~~~~~~~~~i----~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~ 337 (629)
T KOG0963|consen 262 REQLAKANSSKKLAKIDDI----DALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELK 337 (629)
T ss_pred HHHHHhhhhhhhhccCCch----HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66554432211 1111111 111112222224466666666666666666666666666666666666555555554
Q ss_pred HHHHHhhhhhhhh
Q 001734 477 VILAENRRLYNEV 489 (1019)
Q Consensus 477 ~~l~erR~L~N~v 489 (1019)
..+.. |..|++|
T Consensus 338 ~kL~~-~sDYeeI 349 (629)
T KOG0963|consen 338 EKLNS-RSDYEEI 349 (629)
T ss_pred HHHhh-hccHHHH
Confidence 44433 3444443
No 118
>PRK01156 chromosome segregation protein; Provisional
Probab=92.58 E-value=43 Score=43.63 Aligned_cols=26 Identities=12% Similarity=0.086 Sum_probs=14.9
Q ss_pred HHHhhhhhhhhhhccCCEEEEeecCCC
Q 001734 479 LAENRRLYNEVQDLKGNIRVYCRIRPF 505 (1019)
Q Consensus 479 l~erR~L~N~vqelkGnIrV~~RVRP~ 505 (1019)
..+.+.-.+++....|.+. .|=++|.
T Consensus 432 i~~l~~~~~el~~~~~~l~-~~~~Cp~ 457 (895)
T PRK01156 432 IRALRENLDELSRNMEMLN-GQSVCPV 457 (895)
T ss_pred HHHHHHHHHHHHHHHHhhc-cCCCCCC
Confidence 3344445556666566666 4777774
No 119
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.54 E-value=32 Score=42.10 Aligned_cols=10 Identities=40% Similarity=0.687 Sum_probs=6.7
Q ss_pred hHHHHHHHHH
Q 001734 119 PVLQCLRSLR 128 (1019)
Q Consensus 119 ~Vv~cL~aL~ 128 (1019)
-|++|+-+|+
T Consensus 129 EV~~ilK~L~ 138 (581)
T KOG0995|consen 129 EVVQILKNLK 138 (581)
T ss_pred HHHHHHHhCC
Confidence 4777776664
No 120
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=92.53 E-value=0.046 Score=58.97 Aligned_cols=50 Identities=24% Similarity=0.462 Sum_probs=33.2
Q ss_pred eeeeceeeCCCCChHHHHhchHHHHHHHHcCcceeEEeecccCCCCceeeec
Q 001734 540 LFKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 540 ~F~FD~VF~~~atQeeVf~~~~pLV~svLdG~N~~IfAYGQTGSGKTyTM~G 591 (1019)
.|+||.-+.. ..++..|..+..+.+.--..||. +|-||++|+||||-|.+
T Consensus 4 ~~tFdnfv~g-~~N~~a~~~~~~ia~~~~~~~~~-l~l~G~~G~GKTHLL~A 53 (219)
T PF00308_consen 4 KYTFDNFVVG-ESNELAYAAAKAIAENPGERYNP-LFLYGPSGLGKTHLLQA 53 (219)
T ss_dssp T-SCCCS--T-TTTHHHHHHHHHHHHSTTTSSSE-EEEEESTTSSHHHHHHH
T ss_pred CCccccCCcC-CcHHHHHHHHHHHHhcCCCCCCc-eEEECCCCCCHHHHHHH
Confidence 5999997643 44666776666665552223455 78899999999998765
No 121
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=92.52 E-value=9.7 Score=40.99 Aligned_cols=97 Identities=23% Similarity=0.296 Sum_probs=65.7
Q ss_pred hcCCCCchHHHHHHHHHHHHHHHHhhhh---hHHHhhhhhHHHhhHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHH
Q 001734 246 RKNGDAPHRVACLLRKVVPLIERRTATQ---YQNFKNQNNLFRAREEKYKSRIRVLETLTVGTTEENQVVANQLERIKTE 322 (1019)
Q Consensus 246 ~~~~~~~~~~~~~l~kvv~e~e~~is~q---~~~~~~q~~~~~~~~~~~~~~~~~le~l~~~~~ee~~~~~~~l~~l~~e 322 (1019)
-|+||| +||+--..|.-..++.. ...|++|+.-.++....-.+++.-|..-....+.|+++..++|++.+.|
T Consensus 7 qk~GEI-----sLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~E 81 (202)
T PF06818_consen 7 QKSGEI-----SLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNE 81 (202)
T ss_pred hhhhhH-----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCH
Confidence 478888 47777777766666644 4567888888888777777777777776666677888888888876656
Q ss_pred hhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHH
Q 001734 323 KTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELA 361 (1019)
Q Consensus 323 ~~k~eek~~~~e~~~~~l~ke~~~~~~e~~~Lk~ele~~ 361 (1019)
.+-+.++.- ..+.|+..|++++..+
T Consensus 82 a~lLrekl~--------------~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 82 AELLREKLG--------------QLEAELAELREELACA 106 (202)
T ss_pred HHHhhhhhh--------------hhHHHHHHHHHHHHhh
Confidence 555544433 3344666666666654
No 122
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=92.17 E-value=40 Score=42.31 Aligned_cols=17 Identities=24% Similarity=0.380 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001734 350 EISTLKQDLELAKRTHE 366 (1019)
Q Consensus 350 e~~~Lk~ele~~k~~~e 366 (1019)
|+..|+.+++.+...++
T Consensus 88 E~~~L~kElE~L~~qlq 104 (617)
T PF15070_consen 88 EAEHLRKELESLEEQLQ 104 (617)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444333
No 123
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=91.87 E-value=14 Score=45.62 Aligned_cols=19 Identities=16% Similarity=0.106 Sum_probs=13.9
Q ss_pred ccchhhHHHHHHHHHHhcC
Q 001734 26 MAEGNQLSTLVEWLNEMIP 44 (1019)
Q Consensus 26 ~~~~~r~~e~~~Wie~vlg 44 (1019)
+...++..++-.|-..+..
T Consensus 25 r~~~~~i~~Le~~k~~l~~ 43 (569)
T PRK04778 25 KRNYKRIDELEERKQELEN 43 (569)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3344567788899998886
No 124
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=91.62 E-value=16 Score=36.57 Aligned_cols=55 Identities=20% Similarity=0.341 Sum_probs=29.3
Q ss_pred HHHHHHHHhHHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhc
Q 001734 435 DLRVAFESTKHEVLETKKNYSKEFDCLGLNLKRLIDAAEKYHVILAENRRLYNEVQDL 492 (1019)
Q Consensus 435 el~~~~~~~k~ei~~~~~~~~~e~~~l~~~l~~l~~~~~~~~~~l~erR~L~N~vqel 492 (1019)
+|+....+.+..+......|..+=..|... +.+...++.-.-..|+-||++|+.+
T Consensus 77 ~l~~~~~~a~~~l~~~e~sw~~qk~~le~e---~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 77 ELKAEAESAKAELEESEASWEEQKEQLEKE---LSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344444444444444444554443333332 2333344444556799999999865
No 125
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=91.51 E-value=33 Score=40.07 Aligned_cols=21 Identities=38% Similarity=0.795 Sum_probs=15.2
Q ss_pred CcceeEEeecccCCCCceeeecCC
Q 001734 570 GYNVCIFAYGQTGSGKTYTMSGPC 593 (1019)
Q Consensus 570 G~N~~IfAYGQTGSGKTyTM~G~~ 593 (1019)
--|.|+|+-| .|-+.+-.||.
T Consensus 391 a~nr~vf~~~---e~~at~~~~ps 411 (499)
T COG4372 391 ATNRCVFATG---EGRATPRCGPS 411 (499)
T ss_pred ccceeeeccc---cccccCccCCC
Confidence 3489999854 57777777764
No 126
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=91.49 E-value=47 Score=41.71 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001734 382 ESQKKLQELERLLTVSKKKV 401 (1019)
Q Consensus 382 ~le~~l~e~~~~l~~~~~~~ 401 (1019)
+|++++.++.+.+..+.++=
T Consensus 164 eLK~QL~Elq~~Fv~ltne~ 183 (617)
T PF15070_consen 164 ELKEQLAELQDAFVKLTNEN 183 (617)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 45555555555555555443
No 127
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=91.40 E-value=22 Score=38.26 Aligned_cols=13 Identities=23% Similarity=0.483 Sum_probs=5.1
Q ss_pred hHHHHHHHHHHHH
Q 001734 308 ENQVVANQLERIK 320 (1019)
Q Consensus 308 e~~~~~~~l~~l~ 320 (1019)
|+..+..-|.++.
T Consensus 56 eN~~L~epL~~a~ 68 (201)
T PF13851_consen 56 ENKRLSEPLKKAE 68 (201)
T ss_pred HHHHHhHHHHHHH
Confidence 3443443344333
No 128
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=90.96 E-value=0.71 Score=55.01 Aligned_cols=117 Identities=21% Similarity=0.270 Sum_probs=68.0
Q ss_pred ccCCCCCcHHhhhHhhcccc--h---hhHHHHHHHHHHhcCCCCCCCCccHHHHHHHchhhHHHHHHHhhhcCCCcc---
Q 001734 9 FDHSTGTPAENIEALDNMAE--G---NQLSTLVEWLNEMIPHIHLPFEASEEKLRACLVDGTVLCLVLNKLSPDSVE--- 80 (1019)
Q Consensus 9 ~~~~~g~s~~~~~~~~~~~~--~---~r~~e~~~Wie~vlg~~~lp~~~s~edl~~~LrdGviLC~L~N~l~Pgsv~--- 80 (1019)
|.+..|++........+... . +.++-.+-||..+-. .+....+.+-|+||.||-.+..+|.||.|.
T Consensus 362 Fn~~pgL~~~~~~~~~e~~~~~~~~~reer~fr~WmNSlgv------~p~vn~~f~Dl~dglVllq~~dki~pg~Vnwk~ 435 (627)
T KOG0046|consen 362 FNTHPGLEKPENEEIAEMMTEDEEESREERTFRLWMNSLGV------NPYVNNLFEDLRDGLVLLQLYDKVSPGSVNWKH 435 (627)
T ss_pred cccCCCCCCccccchhcccchhHhHHHHHHHHHHHHHhcCC------cHHHHHHHHhhhhhhHHHHHHHHccCCccchhh
Confidence 34556666655555522221 1 233446789988654 456668999999999999999999999981
Q ss_pred --CC-CCCCCCchhHHHHHHHH---HhCCCCC--cccccccCCChhhHHHHHHHHHhhh
Q 001734 81 --MG-ANFEPGPANVKRFLAAM---DDMGLPR--FELSDLEQGNMAPVLQCLRSLRASF 131 (1019)
Q Consensus 81 --k~-~~~~~~~eNI~~FL~ac---~~~Glp~--F~~~DLE~~n~~~Vv~cL~aL~~~~ 131 (1019)
|. .+....|.++.+.=.++ +.++..- ..-.|+..||-.-.+--|+.|.+++
T Consensus 436 vnKp~~~~~~~~kklENcNyav~lGk~~~FSLVgi~G~DI~dGNk~LtLAlvWQLMR~y 494 (627)
T KOG0046|consen 436 VNKPPSPLKMPFKKVENCNYAVKLGKQLKFSLVGIAGQDIVDGNKTLTLALVWQLMRRY 494 (627)
T ss_pred ccCCCCcccccHHHhhcchHHHHHHhhcceeeeccccccccccchHhHHHHHHHHHHHH
Confidence 11 11112244444443343 3333322 5557886666544444444444443
No 129
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=90.90 E-value=63 Score=42.10 Aligned_cols=13 Identities=46% Similarity=0.703 Sum_probs=7.0
Q ss_pred Hhhhhhhhhhhcc
Q 001734 481 ENRRLYNEVQDLK 493 (1019)
Q Consensus 481 erR~L~N~vqelk 493 (1019)
+|..|..+|+-|+
T Consensus 545 ENa~LlkqI~~Lk 557 (1195)
T KOG4643|consen 545 ENAHLLKQIQSLK 557 (1195)
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555554
No 130
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=90.90 E-value=31 Score=38.60 Aligned_cols=49 Identities=18% Similarity=0.196 Sum_probs=36.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001734 346 DRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLL 394 (1019)
Q Consensus 346 ~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le~~l~e~~~~l 394 (1019)
-....|..|..+|+.++..++.+..++...++.....++.+.+.-+..+
T Consensus 117 vK~vqIa~L~rqlq~lk~~qqdEldel~e~~~~el~~l~~~~q~k~~~i 165 (258)
T PF15397_consen 117 VKAVQIANLVRQLQQLKDSQQDELDELNEMRQMELASLSRKIQEKKEEI 165 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456889999999999999998888888777766666666665544443
No 131
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=90.88 E-value=15 Score=37.39 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001734 382 ESQKKLQELERLLTVSKKKVEE 403 (1019)
Q Consensus 382 ~le~~l~e~~~~l~~~~~~~~~ 403 (1019)
.|..+++-++..|......+++
T Consensus 77 ~l~rriq~LEeele~ae~~L~e 98 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKE 98 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHH
Confidence 3445555555555555444444
No 132
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=90.84 E-value=29 Score=38.12 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001734 382 ESQKKLQELERLLTVSKKKVEELESLS 408 (1019)
Q Consensus 382 ~le~~l~e~~~~l~~~~~~~~~le~~~ 408 (1019)
.++.++.+++..|....+.++.++...
T Consensus 138 ~~E~ki~eLE~el~~~~~~lk~lE~~~ 164 (237)
T PF00261_consen 138 AAESKIKELEEELKSVGNNLKSLEASE 164 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhchhHHHHHHHHHHHHHHHHHhhhhh
Confidence 457777788888887777777776544
No 133
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.64 E-value=66 Score=41.94 Aligned_cols=13 Identities=38% Similarity=0.452 Sum_probs=6.7
Q ss_pred HhHHHHHHHHHHH
Q 001734 754 KSLSALGDVIFAL 766 (1019)
Q Consensus 754 kSLsaLg~VI~aL 766 (1019)
+||.||.-+++-|
T Consensus 1088 RSLVALsLIlamL 1100 (1174)
T KOG0933|consen 1088 RSLVALSLILAML 1100 (1174)
T ss_pred HHHHHHHHHHHHH
Confidence 3566665554444
No 134
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=90.46 E-value=16 Score=44.90 Aligned_cols=57 Identities=16% Similarity=0.112 Sum_probs=35.3
Q ss_pred HHHHHHHHhhhhhHHHhhhhhHHHhhHHHHHHHHHHHhhhhccchhhHHHHHHHHHH
Q 001734 262 VVPLIERRTATQYQNFKNQNNLFRAREEKYKSRIRVLETLTVGTTEENQVVANQLER 318 (1019)
Q Consensus 262 vv~e~e~~is~q~~~~~~q~~~~~~~~~~~~~~~~~le~l~~~~~ee~~~~~~~l~~ 318 (1019)
+.||==+|+..--|.|.-|-.+.--+-+--..+|+-||++--++++.+...+..|++
T Consensus 108 ~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQq 164 (861)
T KOG1899|consen 108 EYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQ 164 (861)
T ss_pred HHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHH
Confidence 344445555555555555555544444444556888999888887777766666665
No 135
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=90.43 E-value=46 Score=39.84 Aligned_cols=27 Identities=22% Similarity=0.097 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHhhhhhHHHhhhhhH
Q 001734 257 CLLRKVVPLIERRTATQYQNFKNQNNL 283 (1019)
Q Consensus 257 ~~l~kvv~e~e~~is~q~~~~~~q~~~ 283 (1019)
.=|.--+.+|-+-|-++.+.+++||.-
T Consensus 256 ~Elk~~f~~~~~~i~~~i~~lk~~n~~ 282 (622)
T COG5185 256 QELKLGFEKFVHIINTDIANLKTQNDN 282 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666678888888887753
No 136
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=90.37 E-value=65 Score=41.42 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=11.3
Q ss_pred hhhHHHHHHHHHHHHHHhhhHH
Q 001734 306 TEENQVVANQLERIKTEKTNIA 327 (1019)
Q Consensus 306 ~ee~~~~~~~l~~l~~e~~k~e 327 (1019)
.+|.|.+.+++.++...++..+
T Consensus 385 ~~e~eqLr~elaql~a~r~q~e 406 (980)
T KOG0980|consen 385 REEQEQLRNELAQLLASRTQLE 406 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666554444433
No 137
>PRK06893 DNA replication initiation factor; Validated
Probab=90.11 E-value=0.17 Score=54.75 Aligned_cols=48 Identities=13% Similarity=0.216 Sum_probs=33.1
Q ss_pred eeeeeceeeCCCCChHHHHhchHHHHHHHHcCcceeEEeecccCCCCceeeec
Q 001734 539 RLFKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 539 k~F~FD~VF~~~atQeeVf~~~~pLV~svLdG~N~~IfAYGQTGSGKTyTM~G 591 (1019)
..++||..++... ..-+ ..+.+.+-.++|.+++-||++|+||||.+.+
T Consensus 11 ~~~~fd~f~~~~~-~~~~----~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a 58 (229)
T PRK06893 11 DDETLDNFYADNN-LLLL----DSLRKNFIDLQQPFFYIWGGKSSGKSHLLKA 58 (229)
T ss_pred CcccccccccCCh-HHHH----HHHHHHhhccCCCeEEEECCCCCCHHHHHHH
Confidence 3588999886553 2222 2222333357888899999999999999875
No 138
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=90.07 E-value=56 Score=40.19 Aligned_cols=21 Identities=38% Similarity=0.393 Sum_probs=13.8
Q ss_pred ccchhHHHHHHHHHHHHHHHH
Q 001734 344 NDDRDIEISTLKQDLELAKRT 364 (1019)
Q Consensus 344 ~~~~~~e~~~Lk~ele~~k~~ 364 (1019)
.+....||..||+.|+.++-.
T Consensus 174 ve~L~~Ei~~lke~l~~~~~a 194 (522)
T PF05701_consen 174 VEELSKEIIALKESLESAKLA 194 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777776544
No 139
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=89.97 E-value=62 Score=40.60 Aligned_cols=62 Identities=23% Similarity=0.218 Sum_probs=38.3
Q ss_pred HHhhHHHHHHHHHHHHHhHHHHHHH------HHhhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhh
Q 001734 426 MGCQLGVIQDLRVAFESTKHEVLET------KKNYSKEFDCLGLNLKRLIDAAEKYHVILAENRRLYN 487 (1019)
Q Consensus 426 l~~Q~~~l~el~~~~~~~k~ei~~~------~~~~~~e~~~l~~~l~~l~~~~~~~~~~l~erR~L~N 487 (1019)
++.|.+.+.++..+..+.+.++... -..+.+|.+.|..++..+....+.|-....++-.|-.
T Consensus 246 ~~dqlqel~~l~~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~~~~l~~~~~~LELeN~~l~t 313 (716)
T KOG4593|consen 246 MKDQLQELEELERALSQLREELATLRENRETVGLLQEELEGLQSKLGRLEKLQSTLLGLELENEDLLT 313 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4455566677777777777776633 3466778888887777766665555444334444333
No 140
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=89.74 E-value=42 Score=38.24 Aligned_cols=23 Identities=22% Similarity=0.128 Sum_probs=10.0
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHH
Q 001734 455 SKEFDCLGLNLKRLIDAAEKYHV 477 (1019)
Q Consensus 455 ~~e~~~l~~~l~~l~~~~~~~~~ 477 (1019)
.+++..+-.....+-..++.||.
T Consensus 192 he~m~k~~~~~De~Rkeade~he 214 (294)
T COG1340 192 HEEMIKLFEEADELRKEADELHE 214 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444555554
No 141
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=89.73 E-value=43 Score=38.34 Aligned_cols=115 Identities=19% Similarity=0.317 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHhhHHHhhHH
Q 001734 352 STLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLTVSKKKVEELESLSESKSQRWKRIEHSYQSFMGCQLG 431 (1019)
Q Consensus 352 ~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le~~l~e~~~~l~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~l~~Q~~ 431 (1019)
-.||+++..--..|+++...|... ++-.-.++.+++.+.++++.+|.-.-.+.+.|..-.... |
T Consensus 218 ~qlK~ql~lY~aKyeefq~tl~KS--------NE~F~~fK~E~ekmtKk~kklEKE~l~wr~K~e~aNk~v---L----- 281 (391)
T KOG1850|consen 218 GQLKEQLALYMAKYEEFQTTLAKS--------NELFTKFKQEMEKMTKKIKKLEKETLIWRTKWENANKAV---L----- 281 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH---H-----
Confidence 356666665555566555544322 334556777888888888888876667777775432211 1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCEEEE
Q 001734 432 VIQDLRVAFESTKHEVLETKKNYSKEFDCLGLNLKRLIDAAEKYHVILAENRRLYNEVQDLKGNIRVY 499 (1019)
Q Consensus 432 ~l~el~~~~~~~k~ei~~~~~~~~~e~~~l~~~l~~l~~~~~~~~~~l~erR~L~N~vqelkGnIrV~ 499 (1019)
++......|..++..+..+++.|...+.. .-.+|..|+..+++++++|.+-
T Consensus 282 --------------~la~ekt~~~k~~~~lq~kiq~LekLcRA---Lq~ernel~~~~~~~e~~v~~k 332 (391)
T KOG1850|consen 282 --------------QLAEEKTVRDKEYETLQKKIQRLEKLCRA---LQTERNELNKKLEDLEAQVSAK 332 (391)
T ss_pred --------------HHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHhccccHHHHHHHHhcccchh
Confidence 12223334445566666666665544332 2347888999999999998873
No 142
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=89.72 E-value=69 Score=40.72 Aligned_cols=14 Identities=29% Similarity=0.430 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHH
Q 001734 256 ACLLRKVVPLIERR 269 (1019)
Q Consensus 256 ~~~l~kvv~e~e~~ 269 (1019)
+.++|.+|-++|-.
T Consensus 87 triyRrdv~llEdd 100 (1265)
T KOG0976|consen 87 TRIYRRDVNLLEDD 100 (1265)
T ss_pred HHHHHHHHHHhHHH
Confidence 45666666666544
No 143
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=89.70 E-value=73 Score=41.03 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=12.8
Q ss_pred HHhhHHHHHHHHHHHHHhHHHHHHH
Q 001734 426 MGCQLGVIQDLRVAFESTKHEVLET 450 (1019)
Q Consensus 426 l~~Q~~~l~el~~~~~~~k~ei~~~ 450 (1019)
++.....+++++..+..+..++...
T Consensus 467 le~~~~e~~~lk~~~~~LQ~eLsEk 491 (775)
T PF10174_consen 467 LETYQKELKELKAKLESLQKELSEK 491 (775)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 3444445555555555555555443
No 144
>PRK06620 hypothetical protein; Validated
Probab=89.67 E-value=0.13 Score=55.36 Aligned_cols=50 Identities=16% Similarity=0.226 Sum_probs=34.6
Q ss_pred eeeeeceeeCCCCChHHHHhchHHHHHHHHcCcc---eeEEeecccCCCCceeeec
Q 001734 539 RLFKFNKVFGPEASQEEVFLDTRPLIRSVLDGYN---VCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 539 k~F~FD~VF~~~atQeeVf~~~~pLV~svLdG~N---~~IfAYGQTGSGKTyTM~G 591 (1019)
..|+||..+...++ ...|..++.+.+. -|+| -.++-||++||||||.+..
T Consensus 11 ~~~tfd~Fvvg~~N-~~a~~~~~~~~~~--~~~~~~~~~l~l~Gp~G~GKThLl~a 63 (214)
T PRK06620 11 SKYHPDEFIVSSSN-DQAYNIIKNWQCG--FGVNPYKFTLLIKGPSSSGKTYLTKI 63 (214)
T ss_pred CCCCchhhEecccH-HHHHHHHHHHHHc--cccCCCcceEEEECCCCCCHHHHHHH
Confidence 35899997754444 5577666555432 1444 3589999999999999864
No 145
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=89.60 E-value=0.18 Score=62.14 Aligned_cols=51 Identities=20% Similarity=0.358 Sum_probs=37.0
Q ss_pred eeeeeceeeCCCCChHHHHhchHHHHHHHHcCcceeEEeecccCCCCceeeec
Q 001734 539 RLFKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 539 k~F~FD~VF~~~atQeeVf~~~~pLV~svLdG~N~~IfAYGQTGSGKTyTM~G 591 (1019)
..|+||..+-... +..+|..+..++...-.+||. ||-||.+|+||||-+..
T Consensus 283 ~~~TFDnFvvG~s-N~~A~aaa~avae~~~~~~Np-L~LyG~sGsGKTHLL~A 333 (617)
T PRK14086 283 PKYTFDTFVIGAS-NRFAHAAAVAVAEAPAKAYNP-LFIYGESGLGKTHLLHA 333 (617)
T ss_pred CCCCHhhhcCCCc-cHHHHHHHHHHHhCccccCCc-EEEECCCCCCHHHHHHH
Confidence 4689998664343 445665566666654456786 89999999999999875
No 146
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=89.44 E-value=35 Score=36.96 Aligned_cols=17 Identities=29% Similarity=0.409 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001734 380 KIESQKKLQELERLLTV 396 (1019)
Q Consensus 380 k~~le~~l~e~~~~l~~ 396 (1019)
+...+.+|++++.++..
T Consensus 80 k~~qe~eI~~Le~e~~~ 96 (206)
T PF14988_consen 80 KEQQEREIQTLEEELEK 96 (206)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 147
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=89.42 E-value=13 Score=43.17 Aligned_cols=17 Identities=12% Similarity=0.372 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHhHHHH
Q 001734 431 GVIQDLRVAFESTKHEV 447 (1019)
Q Consensus 431 ~~l~el~~~~~~~k~ei 447 (1019)
..+.+++..+..++..+
T Consensus 253 ~~l~~~~~~l~~~~~~l 269 (423)
T TIGR01843 253 ARLAELRERLNKARDRL 269 (423)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555566666666665
No 148
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=89.02 E-value=60 Score=39.42 Aligned_cols=41 Identities=15% Similarity=0.247 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhHHHHHhhhhhHHHHHHHHH
Q 001734 433 IQDLRVAFESTKHEVLETKKNYSKEFDCLGLNLKRLIDAAE 473 (1019)
Q Consensus 433 l~el~~~~~~~k~ei~~~~~~~~~e~~~l~~~l~~l~~~~~ 473 (1019)
++=++..++..+..|..+...-.++...|..+++.|.+...
T Consensus 142 l~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~ 182 (475)
T PRK10361 142 LSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNA 182 (475)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666655545555566666666655443
No 149
>PRK01156 chromosome segregation protein; Provisional
Probab=88.91 E-value=87 Score=40.84 Aligned_cols=22 Identities=27% Similarity=0.282 Sum_probs=8.6
Q ss_pred HhhhcccchhHHHHHHHHHHHH
Q 001734 339 RLKKENDDRDIEISTLKQDLEL 360 (1019)
Q Consensus 339 ~l~ke~~~~~~e~~~Lk~ele~ 360 (1019)
.+..+.+....++..|+.+++.
T Consensus 222 ~~~~el~~~~~~l~~l~~~l~~ 243 (895)
T PRK01156 222 RLSIEYNNAMDDYNNLKSALNE 243 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444433333
No 150
>PRK12377 putative replication protein; Provisional
Probab=88.87 E-value=0.25 Score=54.56 Aligned_cols=49 Identities=14% Similarity=0.261 Sum_probs=37.4
Q ss_pred eeceeeCCCCChHHHHhchHHHHHHHHcCcceeEEeecccCCCCceeeec
Q 001734 542 KFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 542 ~FD~VF~~~atQeeVf~~~~pLV~svLdG~N~~IfAYGQTGSGKTyTM~G 591 (1019)
+||........|..++..+..+++.+..+. ..++-||++|+||||.+.+
T Consensus 72 tFdnf~~~~~~~~~a~~~a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~A 120 (248)
T PRK12377 72 SFANYQVQNDGQRYALSQAKSIADELMTGC-TNFVFSGKPGTGKNHLAAA 120 (248)
T ss_pred CcCCcccCChhHHHHHHHHHHHHHHHHhcC-CeEEEECCCCCCHHHHHHH
Confidence 566554445667778887888888877664 4678899999999999875
No 151
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.79 E-value=0.21 Score=56.28 Aligned_cols=30 Identities=33% Similarity=0.571 Sum_probs=27.2
Q ss_pred HHHHHHHHcCcceeEEeecccCCCCceeee
Q 001734 561 RPLIRSVLDGYNVCIFAYGQTGSGKTYTMS 590 (1019)
Q Consensus 561 ~pLV~svLdG~N~~IfAYGQTGSGKTyTM~ 590 (1019)
-|++..+++--++.|+.-|+||||||+||-
T Consensus 114 P~i~~~~~~~~~GLILVTGpTGSGKSTTlA 143 (353)
T COG2805 114 PPIVRELAESPRGLILVTGPTGSGKSTTLA 143 (353)
T ss_pred CHHHHHHHhCCCceEEEeCCCCCcHHHHHH
Confidence 567888889999999999999999999985
No 152
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=88.74 E-value=21 Score=41.84 Aligned_cols=37 Identities=16% Similarity=0.263 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001734 348 DIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQ 384 (1019)
Q Consensus 348 ~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le 384 (1019)
..|+.-|+..|..+++.|.+...++-.+..+.+.+++
T Consensus 259 ~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~ 295 (552)
T KOG2129|consen 259 QAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENE 295 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 5577777777777777777766666555444444433
No 153
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=87.93 E-value=12 Score=42.74 Aligned_cols=64 Identities=42% Similarity=0.495 Sum_probs=44.2
Q ss_pred HHHHHHHHHHH------hhhhhHHHhhhhhHHHhhH--HHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHhh
Q 001734 259 LRKVVPLIERR------TATQYQNFKNQNNLFRARE--EKYKSRIRVLETLTVGTTEENQVVANQLERIKTEKT 324 (1019)
Q Consensus 259 l~kvv~e~e~~------is~q~~~~~~q~~~~~~~~--~~~~~~~~~le~l~~~~~ee~~~~~~~l~~l~~e~~ 324 (1019)
||++-+-+|.| +-+|.+.|.+| |+.+++ -+...++.-||.+.....||++.+.-+|+.+..|..
T Consensus 87 lr~i~es~~e~q~e~~qL~~qnqkL~nq--L~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~ 158 (401)
T PF06785_consen 87 LRKIRESVEERQQESEQLQSQNQKLKNQ--LFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECG 158 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 45554444444 77888888887 444444 344666788999999999999888888887665543
No 154
>PRK08084 DNA replication initiation factor; Provisional
Probab=87.91 E-value=0.28 Score=53.41 Aligned_cols=47 Identities=11% Similarity=0.285 Sum_probs=32.3
Q ss_pred eeeeceeeCCCCChHHHHhchHHHHHHHHcCcceeEEeecccCCCCceeeec
Q 001734 540 LFKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 540 ~F~FD~VF~~~atQeeVf~~~~pLV~svLdG~N~~IfAYGQTGSGKTyTM~G 591 (1019)
.|+||..+.. .+...+..+..++. ......++-||++|+||||.+.+
T Consensus 18 ~~~fd~f~~~--~n~~a~~~l~~~~~---~~~~~~l~l~Gp~G~GKThLl~a 64 (235)
T PRK08084 18 DETFASFYPG--DNDSLLAALQNALR---QEHSGYIYLWSREGAGRSHLLHA 64 (235)
T ss_pred cCCccccccC--ccHHHHHHHHHHHh---CCCCCeEEEECCCCCCHHHHHHH
Confidence 4788876644 55666665544433 22234789999999999999875
No 155
>PRK07952 DNA replication protein DnaC; Validated
Probab=87.84 E-value=0.33 Score=53.50 Aligned_cols=50 Identities=14% Similarity=0.173 Sum_probs=35.9
Q ss_pred eeeceeeCCCCChHHHHhchHHHHHHHHcCcceeEEeecccCCCCceeeec
Q 001734 541 FKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 541 F~FD~VF~~~atQeeVf~~~~pLV~svLdG~N~~IfAYGQTGSGKTyTM~G 591 (1019)
.+||........|..++..+..+++....|++ .++-||.+|+||||.+.+
T Consensus 69 ~tFdnf~~~~~~q~~al~~a~~~~~~~~~~~~-~~~l~G~~GtGKThLa~a 118 (244)
T PRK07952 69 CSFENYRVECEGQMNALSKARQYVEEFDGNIA-SFIFSGKPGTGKNHLAAA 118 (244)
T ss_pred CccccccCCCchHHHHHHHHHHHHHhhccCCc-eEEEECCCCCCHHHHHHH
Confidence 45665443445677787777777776655543 688999999999999875
No 156
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=87.76 E-value=0.94 Score=54.05 Aligned_cols=52 Identities=21% Similarity=0.330 Sum_probs=34.9
Q ss_pred ceeeeeceeeCCCCChHHHHhchHHHHHHHHcCcceeEEeecccCCCCceeeec
Q 001734 538 HRLFKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 538 ~k~F~FD~VF~~~atQeeVf~~~~pLV~svLdG~N~~IfAYGQTGSGKTyTM~G 591 (1019)
...|+||.... ...+...|..+..+.+.--..|| .+|-||++|+||||.+..
T Consensus 116 ~~~~tfd~fv~-g~~n~~a~~~~~~~~~~~~~~~~-~l~l~G~~G~GKThL~~a 167 (450)
T PRK00149 116 NPKYTFDNFVV-GKSNRLAHAAALAVAENPGKAYN-PLFIYGGVGLGKTHLLHA 167 (450)
T ss_pred CCCCccccccc-CCCcHHHHHHHHHHHhCcCccCC-eEEEECCCCCCHHHHHHH
Confidence 35688988443 23555567666655554223455 478899999999999865
No 157
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=87.56 E-value=48 Score=36.23 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001734 352 STLKQDLELAKRTHELHCLQLEE 374 (1019)
Q Consensus 352 ~~Lk~ele~~k~~~e~~~~~le~ 374 (1019)
......|+.+|+.|+..|.+++.
T Consensus 117 ~~~~~~l~KaK~~Y~~~c~~~e~ 139 (236)
T cd07651 117 QDQEKYLEKAREKYEADCSKINS 139 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Confidence 34456778888889988888774
No 158
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.45 E-value=0.27 Score=58.88 Aligned_cols=32 Identities=31% Similarity=0.338 Sum_probs=28.0
Q ss_pred hHHHHHHHHcCcceeEEeecccCCCCceeeec
Q 001734 560 TRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 560 ~~pLV~svLdG~N~~IfAYGQTGSGKTyTM~G 591 (1019)
....+..++..-++-|+.-|+||||||.||+.
T Consensus 246 ~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 246 QLARLLRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred HHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 34567788889999999999999999999986
No 159
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=87.42 E-value=19 Score=45.79 Aligned_cols=7 Identities=43% Similarity=0.648 Sum_probs=4.2
Q ss_pred ccccccc
Q 001734 107 FELSDLE 113 (1019)
Q Consensus 107 F~~~DLE 113 (1019)
|+++|||
T Consensus 342 ~E~VeLe 348 (717)
T PF10168_consen 342 LETVELE 348 (717)
T ss_pred EEEEeec
Confidence 6666664
No 160
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=87.12 E-value=21 Score=37.14 Aligned_cols=13 Identities=38% Similarity=0.514 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHH
Q 001734 254 RVACLLRKVVPLI 266 (1019)
Q Consensus 254 ~~~~~l~kvv~e~ 266 (1019)
.|..|+=|||.-+
T Consensus 23 ~v~~LmP~VV~vL 35 (158)
T PF09744_consen 23 AVKGLMPKVVRVL 35 (158)
T ss_pred HHHHHHHHHHHHH
Confidence 4555555554444
No 161
>PRK08116 hypothetical protein; Validated
Probab=87.11 E-value=0.35 Score=53.90 Aligned_cols=51 Identities=22% Similarity=0.394 Sum_probs=37.7
Q ss_pred eeeeceeeCCCCChHHHHhchHHHHHHHHc--CcceeEEeecccCCCCceeeec
Q 001734 540 LFKFNKVFGPEASQEEVFLDTRPLIRSVLD--GYNVCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 540 ~F~FD~VF~~~atQeeVf~~~~pLV~svLd--G~N~~IfAYGQTGSGKTyTM~G 591 (1019)
.++||... .+..+...|..+...++.+.. ..|..++-||++|+||||.+..
T Consensus 81 ~~tFdnf~-~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~a 133 (268)
T PRK08116 81 NSTFENFL-FDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAAC 133 (268)
T ss_pred hcchhccc-CChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHH
Confidence 35677644 456667778777888887654 3466799999999999999864
No 162
>PRK06835 DNA replication protein DnaC; Validated
Probab=87.04 E-value=0.27 Score=56.54 Aligned_cols=38 Identities=24% Similarity=0.430 Sum_probs=29.1
Q ss_pred hHHHHhchHHHHHHHHcCcceeEEeecccCCCCceeeec
Q 001734 553 QEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 553 QeeVf~~~~pLV~svLdG~N~~IfAYGQTGSGKTyTM~G 591 (1019)
...++..+...|+.+-.+. -.|+-||+||+||||.+.+
T Consensus 165 ~~~~~~~~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~a 202 (329)
T PRK06835 165 MEKILEKCKNFIENFDKNN-ENLLFYGNTGTGKTFLSNC 202 (329)
T ss_pred HHHHHHHHHHHHHHHhccC-CcEEEECCCCCcHHHHHHH
Confidence 3456666677888776554 5699999999999998865
No 163
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=86.94 E-value=1.1e+02 Score=39.61 Aligned_cols=11 Identities=36% Similarity=0.377 Sum_probs=5.7
Q ss_pred HHHHHHhHhcc
Q 001734 812 STLKFAERVSG 822 (1019)
Q Consensus 812 sTL~FA~Rak~ 822 (1019)
.-|=-|+|||.
T Consensus 881 aQLVaASrVKA 891 (980)
T KOG0980|consen 881 AQLVAASRVKA 891 (980)
T ss_pred HHHHHHHHhhc
Confidence 33445666654
No 164
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=86.91 E-value=0.28 Score=58.41 Aligned_cols=50 Identities=20% Similarity=0.356 Sum_probs=35.6
Q ss_pred eeeeeceeeCCCCChHHHHhchHHHHHHHHcCcceeEEeecccCCCCceeeec
Q 001734 539 RLFKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 539 k~F~FD~VF~~~atQeeVf~~~~pLV~svLdG~N~~IfAYGQTGSGKTyTM~G 591 (1019)
..|+||..+.. .++...|..+..+... -..||. +|-||++|+||||.|..
T Consensus 100 ~~~tFdnFv~g-~~n~~a~~~~~~~~~~-~~~~n~-l~lyG~~G~GKTHLl~a 149 (440)
T PRK14088 100 PDYTFENFVVG-PGNSFAYHAALEVAKN-PGRYNP-LFIYGGVGLGKTHLLQS 149 (440)
T ss_pred CCCcccccccC-CchHHHHHHHHHHHhC-cCCCCe-EEEEcCCCCcHHHHHHH
Confidence 45899987743 4555667666555543 123675 99999999999999865
No 165
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=86.82 E-value=23 Score=36.33 Aligned_cols=70 Identities=21% Similarity=0.290 Sum_probs=49.2
Q ss_pred CcchHHHHHHHHHhHhhhhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHhhHHHHHHHHHHHhhhhccchh
Q 001734 228 STKSLFNIVNRILDECVERKNGDAPHRVACLLRKVVPLIERRTATQYQNFKNQNNLFRAREEKYKSRIRVLETLTVGTTE 307 (1019)
Q Consensus 228 ~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~l~kvv~e~e~~is~q~~~~~~q~~~~~~~~~~~~~~~~~le~l~~~~~e 307 (1019)
.+.+-++.+++- ++-||+|.-||-..|...|.+| +|-.+|++...+ .||.++-.++.
T Consensus 28 ~s~sals~f~Ak-EeeIErkKmeVrekVq~~Lgrv-eEetkrLa~ire---------------------eLE~l~dP~Rk 84 (159)
T PF04949_consen 28 MSRSALSAFRAK-EEEIERKKMEVREKVQAQLGRV-EEETKRLAEIRE---------------------ELEVLADPMRK 84 (159)
T ss_pred hhHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHH---------------------HHHhhccchHH
Confidence 344556666654 4458888888888888888887 455677766554 46677888888
Q ss_pred hHHHHHHHHHHHH
Q 001734 308 ENQVVANQLERIK 320 (1019)
Q Consensus 308 e~~~~~~~l~~l~ 320 (1019)
|++++...++.++
T Consensus 85 Ev~~vRkkID~vN 97 (159)
T PF04949_consen 85 EVEMVRKKIDSVN 97 (159)
T ss_pred HHHHHHHHHHHHH
Confidence 8888887776643
No 166
>KOG3000 consensus Microtubule-binding protein involved in cell cycle control [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=86.80 E-value=2.3 Score=48.11 Aligned_cols=102 Identities=17% Similarity=0.383 Sum_probs=77.1
Q ss_pred hhHHHHHHHHHHhcCCCCCCCCccHHHHHHHchhhHHHHHHHhhhcCCCcc-CCCCCCCCc-----hhHHHHHHHHHhCC
Q 001734 30 NQLSTLVEWLNEMIPHIHLPFEASEEKLRACLVDGTVLCLVLNKLSPDSVE-MGANFEPGP-----ANVKRFLAAMDDMG 103 (1019)
Q Consensus 30 ~r~~e~~~Wie~vlg~~~lp~~~s~edl~~~LrdGviLC~L~N~l~Pgsv~-k~~~~~~~~-----eNI~~FL~ac~~~G 103 (1019)
--|.|+..|+..++. .++. -.+-|..|-.-|.++.-+.||+|+ +++.|.... -|-..+-.+-..+|
T Consensus 15 ~sR~E~laW~N~~l~-~n~~-------kIEe~~tGaaycqlmd~l~p~~i~lkkVkf~A~~Ehe~i~Nfk~lQ~~f~klg 86 (295)
T KOG3000|consen 15 ESRLEILAWINDLLQ-LNLT-------KIEELCTGAAYCQLMDMLFPPDIPLKKVKFAARLEHEYIPNFKVLQTCFNKLG 86 (295)
T ss_pred cchHHHHHHHHhhhh-cchh-------hhhhhcccchhhhhhhhccCCccccccccccccccchhhhhhHHHHHHHHhcC
Confidence 457799999999998 4441 345566999999999999999995 445553332 37666666669999
Q ss_pred CCC-cccccccCCChhhHHHHHHHHHhhhhccCCCCc
Q 001734 104 LPR-FELSDLEQGNMAPVLQCLRSLRASFSFCDEEDT 139 (1019)
Q Consensus 104 lp~-F~~~DLE~~n~~~Vv~cL~aL~~~~~~k~~g~~ 139 (1019)
+.+ -...+|-+|-+.--+.-+..++.|+...-+|..
T Consensus 87 i~k~v~vdkLvKg~~qDNlEF~qWfkkffd~~~~g~~ 123 (295)
T KOG3000|consen 87 IDKVVDVDKLVKGPFQDNLEFLQWFKKFFDANYGGKG 123 (295)
T ss_pred CcccccHHHHhcccccchHHHHHHHHHHhhccCCccc
Confidence 999 777777777666667778999999988766643
No 167
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=86.70 E-value=1.2e+02 Score=39.83 Aligned_cols=9 Identities=11% Similarity=0.139 Sum_probs=4.9
Q ss_pred CCCceeeec
Q 001734 583 SGKTYTMSG 591 (1019)
Q Consensus 583 SGKTyTM~G 591 (1019)
+=|+|++.-
T Consensus 477 ~~~~Fi~~~ 485 (1072)
T KOG0979|consen 477 DLKAFICCD 485 (1072)
T ss_pred ccceeeeec
Confidence 446666654
No 168
>PRK05642 DNA replication initiation factor; Validated
Probab=86.66 E-value=0.38 Score=52.39 Aligned_cols=49 Identities=14% Similarity=0.301 Sum_probs=29.6
Q ss_pred eeeeceeeCCCCChHHHHhchHHHHHHHHcCc-ceeEEeecccCCCCceeeec
Q 001734 540 LFKFNKVFGPEASQEEVFLDTRPLIRSVLDGY-NVCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 540 ~F~FD~VF~~~atQeeVf~~~~pLV~svLdG~-N~~IfAYGQTGSGKTyTM~G 591 (1019)
.|+||.-+... +..++..+..+.... .++ +..++-||++|+||||-+..
T Consensus 15 ~~tfdnF~~~~--~~~a~~~~~~~~~~~-~~~~~~~l~l~G~~G~GKTHLl~a 64 (234)
T PRK05642 15 DATFANYYPGA--NAAALGYVERLCEAD-AGWTESLIYLWGKDGVGRSHLLQA 64 (234)
T ss_pred cccccccCcCC--hHHHHHHHHHHhhcc-ccCCCCeEEEECCCCCCHHHHHHH
Confidence 48899877432 333333333322211 122 34688999999999999764
No 169
>PLN03188 kinesin-12 family protein; Provisional
Probab=86.46 E-value=67 Score=42.96 Aligned_cols=75 Identities=23% Similarity=0.231 Sum_probs=45.9
Q ss_pred HHHHHhhhhccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccc-------chhHHHHHHHHHHHHHHHHHH
Q 001734 294 RIRVLETLTVGTTEENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKEND-------DRDIEISTLKQDLELAKRTHE 366 (1019)
Q Consensus 294 ~~~~le~l~~~~~ee~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~l~ke~~-------~~~~e~~~Lk~ele~~k~~~e 366 (1019)
|-..||.+....-.+++.+..-++|-|.|++------...|..+.||+.=++ -.+.|..+|-.+-..+|++|+
T Consensus 878 re~~le~~c~~qa~~i~ql~~lv~qyk~e~~~~~~~~~~~~~ki~~l~~~~dg~l~~~~~~~~~~~~~~~~~~~~~~~y~ 957 (1320)
T PLN03188 878 REMALEEFCTKQASEITQLNRLVQQYKHERECNAIIGQTREDKIIRLESLMDGVLSKEDFLEEELASLMHEHKLLKEKYE 957 (1320)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhHHHhhhhhhhHHHHhhhcccccchhhhhhhhhhhhhhhHHHHHHHhh
Confidence 4556666666666677776666676666554211111134555666666553 346677788888888888887
Q ss_pred HH
Q 001734 367 LH 368 (1019)
Q Consensus 367 ~~ 368 (1019)
.+
T Consensus 958 ~~ 959 (1320)
T PLN03188 958 NH 959 (1320)
T ss_pred cC
Confidence 66
No 170
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=86.42 E-value=19 Score=35.76 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=15.3
Q ss_pred HHHHHHHHhHHHHHHHHHhhHHHHHh
Q 001734 435 DLRVAFESTKHEVLETKKNYSKEFDC 460 (1019)
Q Consensus 435 el~~~~~~~k~ei~~~~~~~~~e~~~ 460 (1019)
+....+..++.+|..++.-|..+++.
T Consensus 93 EK~E~veEL~~Dv~DlK~myr~Qi~~ 118 (120)
T PF12325_consen 93 EKSEEVEELRADVQDLKEMYREQIDQ 118 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555666666666667666543
No 171
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=86.42 E-value=83 Score=40.27 Aligned_cols=28 Identities=18% Similarity=0.284 Sum_probs=14.1
Q ss_pred hhhhHHHhhhhhHHHhhHHHHHHHHHHH
Q 001734 271 ATQYQNFKNQNNLFRAREEKYKSRIRVL 298 (1019)
Q Consensus 271 s~q~~~~~~q~~~~~~~~~~~~~~~~~l 298 (1019)
..|.+.++.+..--....+.|+....++
T Consensus 200 ~~ql~~l~~~l~~aE~~l~~fk~~~~l~ 227 (754)
T TIGR01005 200 APEIADLSKQSRDAEAEVAAYRAQSDLL 227 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 4444444554444455556666554433
No 172
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=86.31 E-value=82 Score=37.66 Aligned_cols=50 Identities=16% Similarity=0.271 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHH
Q 001734 308 ENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQD 357 (1019)
Q Consensus 308 e~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~l~ke~~~~~~e~~~Lk~e 357 (1019)
+.+.++.+|++++.+...++.....-..+..++.+..++.+..+..|..+
T Consensus 60 ~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q 109 (420)
T COG4942 60 QRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQ 109 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence 44555556666555555555555544555555555555444444444433
No 173
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.21 E-value=92 Score=38.15 Aligned_cols=16 Identities=13% Similarity=0.023 Sum_probs=9.9
Q ss_pred HhhhhhhhhhhccCCE
Q 001734 481 ENRRLYNEVQDLKGNI 496 (1019)
Q Consensus 481 erR~L~N~vqelkGnI 496 (1019)
+|-+-++.-.+|.+.+
T Consensus 241 EReqk~alkkEL~q~~ 256 (772)
T KOG0999|consen 241 EREQKNALKKELSQYR 256 (772)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 5666666666666643
No 174
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=86.11 E-value=65 Score=41.07 Aligned_cols=15 Identities=33% Similarity=0.439 Sum_probs=7.9
Q ss_pred hhHHHHHHHHHHHhh
Q 001734 286 AREEKYKSRIRVLET 300 (1019)
Q Consensus 286 ~~~~~~~~~~~~le~ 300 (1019)
++|..|..||.-|++
T Consensus 27 ~~E~~~~~~i~~l~~ 41 (717)
T PF09730_consen 27 SKEAYLQQRILELEN 41 (717)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455666655554444
No 175
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=86.05 E-value=0.36 Score=56.64 Aligned_cols=52 Identities=21% Similarity=0.330 Sum_probs=34.5
Q ss_pred ceeeeeceeeCCCCChHHHHhchHHHHHHHHcCcceeEEeecccCCCCceeeec
Q 001734 538 HRLFKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 538 ~k~F~FD~VF~~~atQeeVf~~~~pLV~svLdG~N~~IfAYGQTGSGKTyTM~G 591 (1019)
...|+||.... ...+...|..+..+...--..|| .++-||++|+||||.+..
T Consensus 104 ~~~~tfd~fi~-g~~n~~a~~~~~~~~~~~~~~~n-~l~l~G~~G~GKThL~~a 155 (405)
T TIGR00362 104 NPKYTFDNFVV-GKSNRLAHAAALAVAENPGKAYN-PLFIYGGVGLGKTHLLHA 155 (405)
T ss_pred CCCCccccccc-CCcHHHHHHHHHHHHhCcCccCC-eEEEECCCCCcHHHHHHH
Confidence 35689998442 34556567666555554212245 478899999999999864
No 176
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=86.01 E-value=23 Score=44.61 Aligned_cols=60 Identities=15% Similarity=0.237 Sum_probs=40.6
Q ss_pred HHHHhHhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHH
Q 001734 417 RIEHSYQSFMGCQLGVIQDLRVAFESTKHEVLETKKNYSKEFDCLGLNLKRLIDAAEKYH 476 (1019)
Q Consensus 417 ~~~~~~~~~l~~Q~~~l~el~~~~~~~k~ei~~~~~~~~~e~~~l~~~l~~l~~~~~~~~ 476 (1019)
.+...+-..++.|..+.+.+...+.....++.+.++.|.-|..++...+.+.......++
T Consensus 455 ~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q 514 (861)
T PF15254_consen 455 SKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQ 514 (861)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666777777778888878878888888888888887777665555433333333
No 177
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=85.99 E-value=89 Score=39.89 Aligned_cols=56 Identities=16% Similarity=0.259 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHH
Q 001734 308 ENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKR 363 (1019)
Q Consensus 308 e~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~l~ke~~~~~~e~~~Lk~ele~~k~ 363 (1019)
|++.+..+|.|+..||.-+-...+.....+.....+.......+..|.+.+.+++.
T Consensus 266 EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~ 321 (717)
T PF09730_consen 266 EIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRK 321 (717)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555555555554544333333222233333333333444455555666665555
No 178
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.75 E-value=67 Score=36.15 Aligned_cols=66 Identities=15% Similarity=0.176 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001734 309 NQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEE 374 (1019)
Q Consensus 309 ~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~l~ke~~~~~~e~~~Lk~ele~~k~~~e~~~~~le~ 374 (1019)
...+.++++.|...-+.+..+......++.++..++...+.+|..+++.+..-+..++.+.+-|..
T Consensus 47 ~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~ 112 (265)
T COG3883 47 KKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQV 112 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555566666666667677777777777777777766666666666555544
No 179
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=85.67 E-value=90 Score=37.56 Aligned_cols=20 Identities=10% Similarity=0.014 Sum_probs=9.1
Q ss_pred HHHHHHchhhHHHHHHHhhh
Q 001734 55 EKLRACLVDGTVLCLVLNKL 74 (1019)
Q Consensus 55 edl~~~LrdGviLC~L~N~l 74 (1019)
..++.+-.+||+=--+-|.+
T Consensus 103 k~yqq~c~~~I~~yL~engf 122 (622)
T COG5185 103 KNYQQACQEEIYDYLKENGF 122 (622)
T ss_pred chHHHHHHHHHHHHHHHcCC
Confidence 34555555555443333433
No 180
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=85.60 E-value=93 Score=37.62 Aligned_cols=16 Identities=25% Similarity=0.324 Sum_probs=10.0
Q ss_pred HHHHHHHHHhHhhhhc
Q 001734 232 LFNIVNRILDECVERK 247 (1019)
Q Consensus 232 l~~~~~~~l~~~~~~~ 247 (1019)
--.++|.+.+.+++..
T Consensus 136 Aa~i~n~l~~~yi~~~ 151 (498)
T TIGR03007 136 AKDVVQTLLTIFVEET 151 (498)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3457777777666543
No 181
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.08 E-value=1.3e+02 Score=38.70 Aligned_cols=18 Identities=44% Similarity=0.399 Sum_probs=9.0
Q ss_pred chhHHHHHHHHHHHHHHH
Q 001734 346 DRDIEISTLKQDLELAKR 363 (1019)
Q Consensus 346 ~~~~e~~~Lk~ele~~k~ 363 (1019)
+...+.++|+.++..+|-
T Consensus 696 ~~~s~hsql~~q~~~Lk~ 713 (970)
T KOG0946|consen 696 DFISEHSQLKDQLDLLKN 713 (970)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444555555555553
No 182
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=84.96 E-value=76 Score=36.42 Aligned_cols=54 Identities=22% Similarity=0.332 Sum_probs=34.0
Q ss_pred hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH
Q 001734 306 TEENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAK 362 (1019)
Q Consensus 306 ~ee~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~l~ke~~~~~~e~~~Lk~ele~~k 362 (1019)
++||..++.+..+|+.|....|++....-.++ .++....+..|..|.++|..-.
T Consensus 173 EeEN~~LR~Ea~~L~~et~~~EekEqqLv~dc---v~QL~~An~qia~LseELa~k~ 226 (306)
T PF04849_consen 173 EEENEQLRSEASQLKTETDTYEEKEQQLVLDC---VKQLSEANQQIASLSEELARKT 226 (306)
T ss_pred HHHHHHHHHHHHHhhHHHhhccHHHHHHHHHH---HHHhhhcchhHHHHHHHHHHHH
Confidence 35777777777777777666666544443333 3455556677777777776433
No 183
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=84.90 E-value=38 Score=39.48 Aligned_cols=7 Identities=29% Similarity=0.107 Sum_probs=3.6
Q ss_pred cCcceeE
Q 001734 569 DGYNVCI 575 (1019)
Q Consensus 569 dG~N~~I 575 (1019)
.|-.+.|
T Consensus 326 ~G~~v~v 332 (423)
T TIGR01843 326 VGQPAEI 332 (423)
T ss_pred CCCceEE
Confidence 4555554
No 184
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.88 E-value=1.1e+02 Score=37.66 Aligned_cols=31 Identities=29% Similarity=0.360 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHhhhhhHHHh
Q 001734 256 ACLLRKVVPLIERRTATQYQNFKNQNNLFRA 286 (1019)
Q Consensus 256 ~~~l~kvv~e~e~~is~q~~~~~~q~~~~~~ 286 (1019)
-+||++-+.+.|.||-||.--|..--.-++.
T Consensus 245 ~~llr~t~~~~e~riEtqkqtl~ardesIkk 275 (654)
T KOG4809|consen 245 QFLLRSTDPSGEQRIETQKQTLDARDESIKK 275 (654)
T ss_pred HHHHHhcCchHHHHHHHHHhhhhhHHHHHHH
Confidence 3799999999999999998766554333333
No 185
>PRK09087 hypothetical protein; Validated
Probab=84.66 E-value=0.56 Score=50.97 Aligned_cols=48 Identities=17% Similarity=0.091 Sum_probs=32.2
Q ss_pred eeeeeceeeCCCCChHHHHhchHHHHHHHHcCcceeEEeecccCCCCceeeec
Q 001734 539 RLFKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 539 k~F~FD~VF~~~atQeeVf~~~~pLV~svLdG~N~~IfAYGQTGSGKTyTM~G 591 (1019)
..|+||..+...++. .+|..+ +....-.|..++-||++||||||-+..
T Consensus 16 ~~~~~~~Fi~~~~N~-~a~~~l----~~~~~~~~~~l~l~G~~GsGKThLl~~ 63 (226)
T PRK09087 16 PAYGRDDLLVTESNR-AAVSLV----DHWPNWPSPVVVLAGPVGSGKTHLASI 63 (226)
T ss_pred CCCChhceeecCchH-HHHHHH----HhcccCCCCeEEEECCCCCCHHHHHHH
Confidence 358899988644443 366533 332222355689999999999999864
No 186
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=84.63 E-value=0.61 Score=51.64 Aligned_cols=49 Identities=20% Similarity=0.175 Sum_probs=35.7
Q ss_pred eeeceeeCCCCChHHHHhchHHHHHHHHcCcceeEEeecccCCCCceeeec
Q 001734 541 FKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 541 F~FD~VF~~~atQeeVf~~~~pLV~svLdG~N~~IfAYGQTGSGKTyTM~G 591 (1019)
|.|..+-.....+..+|..+..++..+-.|.|. +-||++|+||||-..+
T Consensus 76 ~~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~nl--~l~G~~G~GKThLa~A 124 (254)
T COG1484 76 FEEFDFEFQPGIDKKALEDLASLVEFFERGENL--VLLGPPGVGKTHLAIA 124 (254)
T ss_pred cccccccCCcchhHHHHHHHHHHHHHhccCCcE--EEECCCCCcHHHHHHH
Confidence 444333345567888888888888777766655 5699999999998865
No 187
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=84.36 E-value=57 Score=34.11 Aligned_cols=90 Identities=19% Similarity=0.269 Sum_probs=46.9
Q ss_pred hhhHHHhhhhhHHHhhHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHH
Q 001734 272 TQYQNFKNQNNLFRAREEKYKSRIRVLETLTVGTTEENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEI 351 (1019)
Q Consensus 272 ~q~~~~~~q~~~~~~~~~~~~~~~~~le~l~~~~~ee~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~l~ke~~~~~~e~ 351 (1019)
++.+.++-.+...+..-.+.+.+++..|.+.-+-. .-...||+.|...+.++...-..++.+|..-.......+
T Consensus 6 ~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~------~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L 79 (177)
T PF13870_consen 6 NEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLH------LIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQIL 79 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555666666666666666666554432 123455666665555544444445555554444444455
Q ss_pred HHHHHHHHHHHHHHHH
Q 001734 352 STLKQDLELAKRTHEL 367 (1019)
Q Consensus 352 ~~Lk~ele~~k~~~e~ 367 (1019)
.+.|+.|..+......
T Consensus 80 ~h~keKl~~~~~~~~~ 95 (177)
T PF13870_consen 80 THVKEKLHFLSEELER 95 (177)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5556655554444333
No 188
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=84.00 E-value=1.2e+02 Score=37.59 Aligned_cols=17 Identities=29% Similarity=0.294 Sum_probs=12.4
Q ss_pred CccchhHHHHHHHHHHH
Q 001734 598 EDWGVNYRALNDLFEIS 614 (1019)
Q Consensus 598 ~~~GIipRal~~LF~~~ 614 (1019)
++.|++-+++..||..+
T Consensus 491 ~~~g~~~~~~s~~~S~l 507 (582)
T PF09731_consen 491 EGAGLLGHLLSYLFSLL 507 (582)
T ss_pred CCCCHHHHHHHHHHhee
Confidence 44588888888888743
No 189
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=83.80 E-value=90 Score=35.99 Aligned_cols=36 Identities=14% Similarity=0.026 Sum_probs=21.9
Q ss_pred CCCcchHHHHHHHHHhHhhhhcCCCCchHHHHHHHHHHHHHHHHhh
Q 001734 226 NASTKSLFNIVNRILDECVERKNGDAPHRVACLLRKVVPLIERRTA 271 (1019)
Q Consensus 226 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~l~kvv~e~e~~is 271 (1019)
+.+..+|-.+|.+.... +|.. .|..-+++|+.++|+
T Consensus 50 ~~~~~sl~~~~~A~~~~--------~P~L--ely~~~c~EL~~~I~ 85 (325)
T PF08317_consen 50 DEEPPSLEDYVVAGYCT--------VPML--ELYQFSCRELKKYIS 85 (325)
T ss_pred CCCCCCHHHHHHHhccC--------ChHH--HHHHHHHHHHHHHHH
Confidence 34555777777765544 6764 455556666666655
No 190
>PRK09039 hypothetical protein; Validated
Probab=83.64 E-value=95 Score=36.17 Aligned_cols=18 Identities=6% Similarity=0.021 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 001734 254 RVACLLRKVVPLIERRTA 271 (1019)
Q Consensus 254 ~~~~~l~kvv~e~e~~is 271 (1019)
++-..|+..|..++..|.
T Consensus 39 ~~q~fLs~~i~~~~~eL~ 56 (343)
T PRK09039 39 VAQFFLSREISGKDSALD 56 (343)
T ss_pred HHHHHHHHHHhhHHHHHH
Confidence 345566666665555544
No 191
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=83.52 E-value=1.1e+02 Score=37.93 Aligned_cols=38 Identities=21% Similarity=0.205 Sum_probs=24.1
Q ss_pred HHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 001734 334 EQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQ 371 (1019)
Q Consensus 334 e~~~~~l~ke~~~~~~e~~~Lk~ele~~k~~~e~~~~~ 371 (1019)
+++...+..-.++.......|..+++.++..|.....+
T Consensus 305 ~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e 342 (560)
T PF06160_consen 305 EKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNE 342 (560)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchH
Confidence 34444555555666777778888888888776543333
No 192
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=83.48 E-value=56 Score=35.88 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001734 349 IEISTLKQDLELAKRTHELHCLQLEE 374 (1019)
Q Consensus 349 ~e~~~Lk~ele~~k~~~e~~~~~le~ 374 (1019)
.....+-..|+.+|+.|+..|.++|.
T Consensus 113 k~~~~~~~~l~KaKk~Y~~~C~e~e~ 138 (239)
T cd07647 113 KNKKELYKKTMKAKKSYEQKCREKDK 138 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445567788889999999999875
No 193
>PRK12704 phosphodiesterase; Provisional
Probab=83.43 E-value=1.2e+02 Score=37.30 Aligned_cols=11 Identities=27% Similarity=0.280 Sum_probs=5.5
Q ss_pred ChHHHHhchHH
Q 001734 552 SQEEVFLDTRP 562 (1019)
Q Consensus 552 tQeeVf~~~~p 562 (1019)
.-++++..+..
T Consensus 283 ~iee~~~~~~~ 293 (520)
T PRK12704 283 RIEEMVEKARK 293 (520)
T ss_pred CHHHHHHHHHH
Confidence 34555555433
No 194
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=83.17 E-value=0.75 Score=48.85 Aligned_cols=47 Identities=19% Similarity=0.386 Sum_probs=32.3
Q ss_pred eeeeceeeCCCCChHHHHhchHHHHHHHHcCcceeEEeecccCCCCceeeec
Q 001734 540 LFKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 540 ~F~FD~VF~~~atQeeVf~~~~pLV~svLdG~N~~IfAYGQTGSGKTyTM~G 591 (1019)
.++||....+ .+..++...+.++. .+....|+-||++|+||||....
T Consensus 11 ~~~~~~~~~~--~~~~~~~~l~~~~~---~~~~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 11 DPTFDNFYAG--GNAELLAALRQLAA---GKGDRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred chhhcCcCcC--CcHHHHHHHHHHHh---cCCCCeEEEECCCCCCHHHHHHH
Confidence 4778776632 44555555444432 45677899999999999998753
No 195
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=83.12 E-value=3.2 Score=48.10 Aligned_cols=19 Identities=32% Similarity=0.564 Sum_probs=15.8
Q ss_pred ceeEEeecccCCCCceeee
Q 001734 572 NVCIFAYGQTGSGKTYTMS 590 (1019)
Q Consensus 572 N~~IfAYGQTGSGKTyTM~ 590 (1019)
...|+-||++|+|||++.-
T Consensus 156 p~gvLL~GppGtGKT~lak 174 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAK 174 (364)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3458899999999998874
No 196
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=83.06 E-value=52 Score=39.28 Aligned_cols=10 Identities=10% Similarity=0.059 Sum_probs=5.2
Q ss_pred hHHHHHHHHH
Q 001734 91 NVKRFLAAMD 100 (1019)
Q Consensus 91 NI~~FL~ac~ 100 (1019)
+..-||.+|.
T Consensus 87 t~~Dll~F~~ 96 (493)
T KOG0804|consen 87 TSHDLLRFCA 96 (493)
T ss_pred cHHHHHHHHH
Confidence 4555555553
No 197
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=82.79 E-value=1.1e+02 Score=36.13 Aligned_cols=30 Identities=23% Similarity=0.262 Sum_probs=12.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhhhc
Q 001734 463 LNLKRLIDAAEKYHVILAENRRLYNEVQDL 492 (1019)
Q Consensus 463 ~~l~~l~~~~~~~~~~l~erR~L~N~vqel 492 (1019)
.++++|..+....+.+.++=.++|-..+++
T Consensus 259 ~~lq~lEt~q~~leqeva~le~yyQ~y~~l 288 (499)
T COG4372 259 RQLQRLETAQARLEQEVAQLEAYYQAYVRL 288 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444333344443334444444444
No 198
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=82.67 E-value=0.8 Score=49.09 Aligned_cols=49 Identities=16% Similarity=0.304 Sum_probs=31.5
Q ss_pred eeeeeceeeCCCCChHHHHhchHHHHHHHHcCcceeEEeecccCCCCceeeec
Q 001734 539 RLFKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 539 k~F~FD~VF~~~atQeeVf~~~~pLV~svLdG~N~~IfAYGQTGSGKTyTM~G 591 (1019)
..|+||.+++ ... ..++..++.++.. .+.+..++-||++|+||||.+..
T Consensus 13 ~~~~~d~f~~-~~~-~~~~~~l~~~~~~--~~~~~~~~l~G~~G~GKT~La~a 61 (227)
T PRK08903 13 PPPTFDNFVA-GEN-AELVARLRELAAG--PVADRFFYLWGEAGSGRSHLLQA 61 (227)
T ss_pred Chhhhccccc-CCc-HHHHHHHHHHHhc--cCCCCeEEEECCCCCCHHHHHHH
Confidence 3588999873 222 2344444444432 23456789999999999998754
No 199
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.59 E-value=1.3e+02 Score=38.72 Aligned_cols=49 Identities=20% Similarity=0.165 Sum_probs=24.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001734 346 DRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLT 395 (1019)
Q Consensus 346 ~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le~~l~e~~~~l~ 395 (1019)
..+.+++.++|....++..+|+...+...... ....+++++..++..|.
T Consensus 668 ~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s-~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 668 ELDYQIENLKQMEKELQVENEELEEEVQDFIS-EHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhc
Confidence 34556666666666655555554333333211 23445555555555555
No 200
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=82.58 E-value=61 Score=33.13 Aligned_cols=8 Identities=50% Similarity=0.679 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 001734 387 LQELERLL 394 (1019)
Q Consensus 387 l~e~~~~l 394 (1019)
+...+..|
T Consensus 89 le~ae~~L 96 (143)
T PF12718_consen 89 LEEAEKKL 96 (143)
T ss_pred HHHHHHHH
Confidence 33333333
No 201
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=82.28 E-value=1.1e+02 Score=38.69 Aligned_cols=19 Identities=5% Similarity=0.008 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHhhhhh
Q 001734 256 ACLLRKVVPLIERRTATQY 274 (1019)
Q Consensus 256 ~~~l~kvv~e~e~~is~q~ 274 (1019)
...+..++.+..+||....
T Consensus 318 ~~~~~~~l~~~~~~i~~~~ 336 (650)
T TIGR03185 318 NQLTQEELEERDKELLESL 336 (650)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555655444
No 202
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=81.93 E-value=64 Score=35.74 Aligned_cols=38 Identities=26% Similarity=0.291 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001734 330 EKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEE 374 (1019)
Q Consensus 330 ~~~~e~~~~~l~ke~~~~~~e~~~Lk~ele~~k~~~e~~~~~le~ 374 (1019)
+|..+..+.++.+.. ..+-..|+..|+.|+..|.+.+.
T Consensus 101 rK~~e~~~eK~qk~~-------~~~~k~l~ksKk~Ye~~Cke~~~ 138 (242)
T cd07671 101 RKKYEAVMERVQKSK-------VSLYKKTMESKKTYEQRCREADE 138 (242)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555544443 33456677888899988888765
No 203
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=81.84 E-value=54 Score=41.93 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=13.3
Q ss_pred HHhhHHHHHhhhhhHHHHHHHHHHH
Q 001734 451 KKNYSKEFDCLGLNLKRLIDAAEKY 475 (1019)
Q Consensus 451 ~~~~~~e~~~l~~~l~~l~~~~~~~ 475 (1019)
.+.|.+|+..+..+++.|....+..
T Consensus 634 Er~~~~EL~~~~~~l~~l~~si~~l 658 (717)
T PF10168_consen 634 EREFKKELERMKDQLQDLKASIEQL 658 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566665555555554444433
No 204
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=81.78 E-value=0.9 Score=52.05 Aligned_cols=38 Identities=29% Similarity=0.514 Sum_probs=25.6
Q ss_pred hHHHHhchHHHHHHHHc-CcceeEEeecccCCCCceeee
Q 001734 553 QEEVFLDTRPLIRSVLD-GYNVCIFAYGQTGSGKTYTMS 590 (1019)
Q Consensus 553 QeeVf~~~~pLV~svLd-G~N~~IfAYGQTGSGKTyTM~ 590 (1019)
.++-++.....+..++. +...+++-||++|+|||+++.
T Consensus 20 Re~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~ 58 (365)
T TIGR02928 20 RDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTK 58 (365)
T ss_pred cHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHH
Confidence 34444444445555554 455689999999999999864
No 205
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=81.56 E-value=1.4e+02 Score=36.80 Aligned_cols=39 Identities=8% Similarity=-0.043 Sum_probs=29.2
Q ss_pred CCchHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHhhH
Q 001734 250 DAPHRVACLLRKVVPLIERRTATQYQNFKNQNNLFRARE 288 (1019)
Q Consensus 250 ~~~~~~~~~l~kvv~e~e~~is~q~~~~~~q~~~~~~~~ 288 (1019)
-||..|--=+.+-++++.|++..+.|++..+-+..++..
T Consensus 330 ~ikN~v~~n~e~~~e~~~r~~e~~kd~~~~~~~~~~~~~ 368 (607)
T KOG0240|consen 330 TIKNTVWVNLELTAEEWKRKLEKKKDKNVALKEELEKLR 368 (607)
T ss_pred cccchhhhhhHhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 466666556777789999999999999988766554433
No 206
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=81.45 E-value=0.68 Score=55.42 Aligned_cols=50 Identities=26% Similarity=0.422 Sum_probs=33.9
Q ss_pred eeeeceeeCCCCChHHHHhchHHHHHHHHcCcceeEEeecccCCCCceeeec
Q 001734 540 LFKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 540 ~F~FD~VF~~~atQeeVf~~~~pLV~svLdG~N~~IfAYGQTGSGKTyTM~G 591 (1019)
.|+||..+... +++..|..+..++..-=..|| .+|-||.+|+||||.|..
T Consensus 111 ~~tFdnFv~g~-~n~~A~~aa~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~A 160 (450)
T PRK14087 111 ENTFENFVIGS-SNEQAFIAVQTVSKNPGISYN-PLFIYGESGMGKTHLLKA 160 (450)
T ss_pred ccchhcccCCC-cHHHHHHHHHHHHhCcCcccC-ceEEECCCCCcHHHHHHH
Confidence 48999976544 455567655555443111245 478999999999999865
No 207
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=81.31 E-value=20 Score=42.19 Aligned_cols=18 Identities=33% Similarity=0.593 Sum_probs=15.1
Q ss_pred ceeEEeecccCCCCceee
Q 001734 572 NVCIFAYGQTGSGKTYTM 589 (1019)
Q Consensus 572 N~~IfAYGQTGSGKTyTM 589 (1019)
...|+-||++|+|||+..
T Consensus 165 p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCceEEECCCCCChHHHH
Confidence 345889999999999875
No 208
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=81.21 E-value=1.6 Score=51.75 Aligned_cols=80 Identities=15% Similarity=0.168 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHhcCCCCCCCCccHHHHHHHchhhHHHHHHHhhhcCCCc-cCC---------CCCCCCchhHHHHHHHHH
Q 001734 31 QLSTLVEWLNEMIPHIHLPFEASEEKLRACLVDGTVLCLVLNKLSPDSV-EMG---------ANFEPGPANVKRFLAAMD 100 (1019)
Q Consensus 31 r~~e~~~Wie~vlg~~~lp~~~s~edl~~~LrdGviLC~L~N~l~Pgsv-~k~---------~~~~~~~eNI~~FL~ac~ 100 (1019)
.+.....|=...+| .-.| +.+.-||...-|||.+||+|+|...|..+ +.+ .+.++.++|-+.|+...+
T Consensus 126 ~~~~lllwc~~~t~-~y~p-~vd~~df~rswrdGLaf~aLIh~~rPDtld~n~ld~qkknk~~n~~qafe~a~k~Igi~r 203 (612)
T COG5069 126 KHINLLLWCDEDTG-GYKP-EVDTFDFFRSWRDGLAFSALIHDSRPDTLDPNVLDLQKKNKALNNFQAFENANKVIGIAR 203 (612)
T ss_pred hhhhhheecccccc-CcCC-CccHHHHHHHhhhhHHHHHHHhhcCCcccCccccchhhcccchhHHHHHHHHHHhhchHh
Confidence 34456667666666 3334 45566899999999999999999999966 222 223445677777777777
Q ss_pred hCCCCCcccccc
Q 001734 101 DMGLPRFELSDL 112 (1019)
Q Consensus 101 ~~Glp~F~~~DL 112 (1019)
.+|+-+-.-++.
T Consensus 204 li~vedivnV~~ 215 (612)
T COG5069 204 LIGVEDIVNVSI 215 (612)
T ss_pred hcCcceeeecCC
Confidence 777766444444
No 209
>PRK10865 protein disaggregation chaperone; Provisional
Probab=81.01 E-value=47 Score=43.28 Aligned_cols=44 Identities=27% Similarity=0.349 Sum_probs=27.0
Q ss_pred eceeeCCCCChHHHHhchHHHHHHHHcCcc------eeEEeecccCCCCceeee
Q 001734 543 FNKVFGPEASQEEVFLDTRPLIRSVLDGYN------VCIFAYGQTGSGKTYTMS 590 (1019)
Q Consensus 543 FD~VF~~~atQeeVf~~~~pLV~svLdG~N------~~IfAYGQTGSGKTyTM~ 590 (1019)
+.+|+|. ...-..+...|..+..|.. ++++-+|+||+|||++.-
T Consensus 567 ~~~viGQ----~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~ 616 (857)
T PRK10865 567 HHRVIGQ----NEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCK 616 (857)
T ss_pred CCeEeCC----HHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHH
Confidence 4556653 3443444444444444432 577888999999999763
No 210
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=80.77 E-value=0.74 Score=54.29 Aligned_cols=51 Identities=22% Similarity=0.402 Sum_probs=31.8
Q ss_pred eeeeeceeeCCCCChHHHHhchHHHHHHHHcCcceeEEeecccCCCCceeeec
Q 001734 539 RLFKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 539 k~F~FD~VF~~~atQeeVf~~~~pLV~svLdG~N~~IfAYGQTGSGKTyTM~G 591 (1019)
..|+||..... .++.-.|..+..+-+..-.-||. ||-||.+|+||||-|..
T Consensus 82 ~~ytFdnFv~g-~~N~~A~aa~~~va~~~g~~~np-lfi~G~~GlGKTHLl~A 132 (408)
T COG0593 82 PKYTFDNFVVG-PSNRLAYAAAKAVAENPGGAYNP-LFIYGGVGLGKTHLLQA 132 (408)
T ss_pred CCCchhheeeC-CchHHHHHHHHHHHhccCCcCCc-EEEECCCCCCHHHHHHH
Confidence 45999986644 44444444333222221122554 78999999999999964
No 211
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=80.75 E-value=1.4e+02 Score=36.64 Aligned_cols=52 Identities=23% Similarity=0.281 Sum_probs=33.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001734 345 DDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLTVSKKKV 401 (1019)
Q Consensus 345 ~~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le~~l~e~~~~l~~~~~~~ 401 (1019)
++......+|+.|.+.++++|-.-..++.. ...++++|++++..+......+
T Consensus 319 ~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~-----vr~~e~eL~el~~~~~~i~~~~ 370 (570)
T COG4477 319 EKAKENNEHLKEEIERVKESYRLAETELGS-----VRKFEKELKELESVLDEILENI 370 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccChhHHHH-----HHHHHHHHHHHHHHHHHHHHHh
Confidence 344556678889999888888764444333 3456677777777666555443
No 212
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=80.71 E-value=5.2 Score=47.34 Aligned_cols=51 Identities=22% Similarity=0.374 Sum_probs=31.4
Q ss_pred eeeeceeeCCCCChHHHHhch-HHHHH-HHHc--C--cceeEEeecccCCCCceeee
Q 001734 540 LFKFNKVFGPEASQEEVFLDT-RPLIR-SVLD--G--YNVCIFAYGQTGSGKTYTMS 590 (1019)
Q Consensus 540 ~F~FD~VF~~~atQeeVf~~~-~pLV~-svLd--G--~N~~IfAYGQTGSGKTyTM~ 590 (1019)
.++|+.|-+.+..-+++-+.+ .|+.. ..+. | ....|+-||++|+|||+..-
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAk 197 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAK 197 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHH
Confidence 366777766555445554443 34442 2333 2 24568889999999998763
No 213
>PRK06526 transposase; Provisional
Probab=80.69 E-value=0.63 Score=51.55 Aligned_cols=40 Identities=20% Similarity=0.244 Sum_probs=25.5
Q ss_pred eCCCCChHHHHhc-hHHHHHHHHcCcceeEEeecccCCCCceeeec
Q 001734 547 FGPEASQEEVFLD-TRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 547 F~~~atQeeVf~~-~~pLV~svLdG~N~~IfAYGQTGSGKTyTM~G 591 (1019)
+.+.-++..+..- +.+.|+ .+.| |+.||++|+||||.+.+
T Consensus 77 ~~~~~~~~~~~~l~~~~fi~---~~~n--lll~Gp~GtGKThLa~a 117 (254)
T PRK06526 77 HQRSLKRDTIAHLGTLDFVT---GKEN--VVFLGPPGTGKTHLAIG 117 (254)
T ss_pred cCCCcchHHHHHHhcCchhh---cCce--EEEEeCCCCchHHHHHH
Confidence 3344445444432 234443 4555 68899999999999875
No 214
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=80.58 E-value=88 Score=33.66 Aligned_cols=26 Identities=46% Similarity=0.593 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001734 381 IESQKKLQELERLLTVSKKKVEELES 406 (1019)
Q Consensus 381 ~~le~~l~e~~~~l~~~~~~~~~le~ 406 (1019)
.+|..++..++..++....++..|+.
T Consensus 121 eeL~~kL~~~~~~l~~~~~ki~~Lek 146 (194)
T PF15619_consen 121 EELQRKLSQLEQKLQEKEKKIQELEK 146 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666655554
No 215
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=80.52 E-value=1.3e+02 Score=36.80 Aligned_cols=46 Identities=13% Similarity=0.271 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHHH
Q 001734 432 VIQDLRVAFESTKHEVLETKKNYSKEFDCLGLNLKRLIDAAEKYHV 477 (1019)
Q Consensus 432 ~l~el~~~~~~~k~ei~~~~~~~~~e~~~l~~~l~~l~~~~~~~~~ 477 (1019)
.++++...+..++.|+..+++.|.++++.|-.++..|.+....-+.
T Consensus 463 eL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~e 508 (518)
T PF10212_consen 463 ELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNEQLAKQRE 508 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777788889999999999999999999999888776654443
No 216
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=80.37 E-value=1.5e+02 Score=36.32 Aligned_cols=46 Identities=13% Similarity=0.189 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 001734 350 EISTLKQDLELAKRTHELHCLQL---EEQIYETKIESQKKLQELERLLT 395 (1019)
Q Consensus 350 e~~~Lk~ele~~k~~~e~~~~~l---e~~~~~~k~~le~~l~e~~~~l~ 395 (1019)
|+..|++|.+.++......+.++ ..+..+.+.++..+...++...+
T Consensus 275 el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~ 323 (511)
T PF09787_consen 275 ELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQ 323 (511)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 45566666666554433333333 33333444444333333333333
No 217
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=79.63 E-value=95 Score=33.48 Aligned_cols=31 Identities=26% Similarity=0.323 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 001734 382 ESQKKLQELERLLTVSKKKVEELESLSESKS 412 (1019)
Q Consensus 382 ~le~~l~e~~~~l~~~~~~~~~le~~~~~~~ 412 (1019)
.+++++++++-+-+.+..++..++.-+..-+
T Consensus 97 ~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~ 127 (201)
T PF13851_consen 97 ELEKELKDLKWEHEVLEQRFEKLEQERDELY 127 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566665555555555555554443333
No 218
>PRK08181 transposase; Validated
Probab=79.48 E-value=1.1 Score=50.29 Aligned_cols=21 Identities=29% Similarity=0.629 Sum_probs=17.9
Q ss_pred cCcceeEEeecccCCCCceeeec
Q 001734 569 DGYNVCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 569 dG~N~~IfAYGQTGSGKTyTM~G 591 (1019)
.|.| |+-||++|+||||-+.+
T Consensus 105 ~~~n--lll~Gp~GtGKTHLa~A 125 (269)
T PRK08181 105 KGAN--LLLFGPPGGGKSHLAAA 125 (269)
T ss_pred cCce--EEEEecCCCcHHHHHHH
Confidence 5555 78899999999999876
No 219
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=79.38 E-value=0.82 Score=46.10 Aligned_cols=29 Identities=28% Similarity=0.303 Sum_probs=19.9
Q ss_pred HHHHHHcC-cceeEEeecccCCCCceeeec
Q 001734 563 LIRSVLDG-YNVCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 563 LV~svLdG-~N~~IfAYGQTGSGKTyTM~G 591 (1019)
+++.+-.+ .+..++..++||||||++|..
T Consensus 15 i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 15 IINSLENKKEERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp HHHHHHTTSGCSEEEEEESTTSSHHHHHHH
T ss_pred HHHHHHhcCCCCCEEEEECCCCCcChhhhh
Confidence 33333333 345566778999999999986
No 220
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=79.38 E-value=32 Score=40.97 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001734 372 LEEQIYETKIESQKKLQELERLLTV 396 (1019)
Q Consensus 372 le~~~~~~k~~le~~l~e~~~~l~~ 396 (1019)
++...+++....+.++.||+..|.+
T Consensus 422 ~~e~~~~~~~s~d~~I~dLqEQlrD 446 (493)
T KOG0804|consen 422 LEEREKEALGSKDEKITDLQEQLRD 446 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333334444444444444444433
No 221
>PRK08727 hypothetical protein; Validated
Probab=79.37 E-value=1.1 Score=48.80 Aligned_cols=45 Identities=16% Similarity=0.275 Sum_probs=27.7
Q ss_pred eeeeceeeCCCCChHHHHhchHHHHHHHHcCc-ceeEEeecccCCCCceeeec
Q 001734 540 LFKFNKVFGPEASQEEVFLDTRPLIRSVLDGY-NVCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 540 ~F~FD~VF~~~atQeeVf~~~~pLV~svLdG~-N~~IfAYGQTGSGKTyTM~G 591 (1019)
.|+||.-+...+ + ....+.+ +..|. .-.|+-||++|+||||.+..
T Consensus 15 ~~~f~~f~~~~~-n--~~~~~~~----~~~~~~~~~l~l~G~~G~GKThL~~a 60 (233)
T PRK08727 15 DQRFDSYIAAPD-G--LLAQLQA----LAAGQSSDWLYLSGPAGTGKTHLALA 60 (233)
T ss_pred cCChhhccCCcH-H--HHHHHHH----HHhccCCCeEEEECCCCCCHHHHHHH
Confidence 478888664333 2 2222222 22233 24599999999999999865
No 222
>PRK08939 primosomal protein DnaI; Reviewed
Probab=79.25 E-value=0.84 Score=51.97 Aligned_cols=51 Identities=14% Similarity=0.316 Sum_probs=33.7
Q ss_pred eeeceeeCCCCChHHHHhchHHHHHHHHcC-cceeEEeecccCCCCceeeec
Q 001734 541 FKFNKVFGPEASQEEVFLDTRPLIRSVLDG-YNVCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 541 F~FD~VF~~~atQeeVf~~~~pLV~svLdG-~N~~IfAYGQTGSGKTyTM~G 591 (1019)
.+||.+-.....+..++..+...++....| ..-.++-||++|+||||-+.+
T Consensus 124 atf~~~~~~~~~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred CcHHHhcCCChHHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHH
Confidence 455554333335666666556666665543 234689999999999999876
No 223
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=79.04 E-value=1.9e+02 Score=36.55 Aligned_cols=29 Identities=31% Similarity=0.322 Sum_probs=20.2
Q ss_pred HHHHHHHHhhhcccchhHHHHHHHHHHHH
Q 001734 332 LEEQNALRLKKENDDRDIEISTLKQDLEL 360 (1019)
Q Consensus 332 ~~e~~~~~l~ke~~~~~~e~~~Lk~ele~ 360 (1019)
..|+.|--+.||.+...+|+..||.+|.+
T Consensus 413 ~lEkKvqa~~kERDalr~e~kslk~ela~ 441 (961)
T KOG4673|consen 413 TLEKKVQALTKERDALRREQKSLKKELAA 441 (961)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 45566666777777777777777777765
No 224
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.55 E-value=1.2e+02 Score=34.15 Aligned_cols=72 Identities=19% Similarity=0.293 Sum_probs=35.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001734 314 NQLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQE 389 (1019)
Q Consensus 314 ~~l~~l~~e~~k~eek~~~~e~~~~~l~ke~~~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le~~l~e 389 (1019)
+.+..+..++..++.+...+...+..+.......+.++..+++++..+++ .+..++....+...-|++|.+.
T Consensus 38 s~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~----eI~~~~~~I~~r~~~l~~raRA 109 (265)
T COG3883 38 SKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQK----EIAELKENIVERQELLKKRARA 109 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555666665555555555555555555555555555443332 2333333334444444444443
No 225
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=78.53 E-value=24 Score=43.51 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=17.5
Q ss_pred HHHHHHchhhHHHHHHHhhhcCCC
Q 001734 55 EKLRACLVDGTVLCLVLNKLSPDS 78 (1019)
Q Consensus 55 edl~~~LrdGviLC~L~N~l~Pgs 78 (1019)
+++.+...|+-=|.+++..+-||.
T Consensus 57 DnvyEL~~~~~~li~il~~lP~~t 80 (652)
T COG2433 57 DNVYELGADKRDLIRILKRLPEGT 80 (652)
T ss_pred ccHHHHhcChhHHHHHHHhCCCCc
Confidence 357777777878888888876653
No 226
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=78.40 E-value=1.4e+02 Score=34.67 Aligned_cols=27 Identities=30% Similarity=0.290 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001734 353 TLKQDLELAKRTHELHCLQLEEQIYET 379 (1019)
Q Consensus 353 ~Lk~ele~~k~~~e~~~~~le~~~~~~ 379 (1019)
.|.-+|+..|+.|+.-.+.|--+++++
T Consensus 171 Kl~~qLeeEk~RHeqis~mLilEcKka 197 (561)
T KOG1103|consen 171 KLEMQLEEEKKRHEQISLMLILECKKA 197 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777888887766665555544
No 227
>PLN02939 transferase, transferring glycosyl groups
Probab=77.92 E-value=1.1e+02 Score=40.21 Aligned_cols=14 Identities=21% Similarity=0.211 Sum_probs=7.9
Q ss_pred HHHHHHHHhhhccc
Q 001734 332 LEEQNALRLKKEND 345 (1019)
Q Consensus 332 ~~e~~~~~l~ke~~ 345 (1019)
+.++.+.+|..|+.
T Consensus 198 ~~~~~~~~~~~~~~ 211 (977)
T PLN02939 198 ILEEQLEKLRNELL 211 (977)
T ss_pred hhHHHHHHHhhhhh
Confidence 34555666666664
No 228
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=77.88 E-value=40 Score=31.19 Aligned_cols=46 Identities=20% Similarity=0.302 Sum_probs=37.3
Q ss_pred HhHhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHhhhhhH
Q 001734 420 HSYQSFMGCQLGVIQDLRVAFESTKHEVLETKKNYSKEFDCLGLNL 465 (1019)
Q Consensus 420 ~~~~~~l~~Q~~~l~el~~~~~~~k~ei~~~~~~~~~e~~~l~~~l 465 (1019)
..+...+..|...++.++.++..+...-.+++..|.+++..|...|
T Consensus 28 ~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eL 73 (79)
T PF08581_consen 28 DEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRREL 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667888888999999999999888899999999988775544
No 229
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=77.88 E-value=1.4 Score=51.57 Aligned_cols=30 Identities=37% Similarity=0.585 Sum_probs=22.2
Q ss_pred hHHHHHHHHcCccee-EEeecccCCCCceee
Q 001734 560 TRPLIRSVLDGYNVC-IFAYGQTGSGKTYTM 589 (1019)
Q Consensus 560 ~~pLV~svLdG~N~~-IfAYGQTGSGKTyTM 589 (1019)
+...+..++.|.-.. ++.||.||+|||.|+
T Consensus 29 l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 29 LASFLAPALRGERPSNIIIYGPTGTGKTATV 59 (366)
T ss_pred HHHHHHHHhcCCCCccEEEECCCCCCHhHHH
Confidence 344466666665443 999999999999886
No 230
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=77.53 E-value=3e+02 Score=38.07 Aligned_cols=10 Identities=20% Similarity=0.338 Sum_probs=5.0
Q ss_pred ccCcCchhhh
Q 001734 773 VPYRNSKLTQ 782 (1019)
Q Consensus 773 IPYRdSKLTr 782 (1019)
+||....|..
T Consensus 839 L~a~~~~l~~ 848 (1353)
T TIGR02680 839 LPTDPDALEA 848 (1353)
T ss_pred CCCChhHHHH
Confidence 4555554444
No 231
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=77.37 E-value=11 Score=47.15 Aligned_cols=27 Identities=33% Similarity=0.529 Sum_probs=21.8
Q ss_pred HHHHHHcCcceeEEeecccCCCCceee
Q 001734 563 LIRSVLDGYNVCIFAYGQTGSGKTYTM 589 (1019)
Q Consensus 563 LV~svLdG~N~~IfAYGQTGSGKTyTM 589 (1019)
++..+..++...|+-||++|+|||+..
T Consensus 166 l~~~ia~~~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 166 LLAKVASPFPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred HHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 455556677878889999999999875
No 232
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=77.23 E-value=26 Score=40.21 Aligned_cols=37 Identities=30% Similarity=0.376 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH
Q 001734 326 IAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAK 362 (1019)
Q Consensus 326 ~eek~~~~e~~~~~l~ke~~~~~~e~~~Lk~ele~~k 362 (1019)
++++.+...+++..|.++.+..+.|+..|+.+++.++
T Consensus 55 le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~ 91 (314)
T PF04111_consen 55 LEQEEEELLQELEELEKEREELDQELEELEEELEELD 91 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444455555555555666666665555443
No 233
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=77.15 E-value=1.7 Score=50.44 Aligned_cols=37 Identities=30% Similarity=0.455 Sum_probs=24.4
Q ss_pred HHHHhchHHHHHHHHc-CcceeEEeecccCCCCceeee
Q 001734 554 EEVFLDTRPLIRSVLD-GYNVCIFAYGQTGSGKTYTMS 590 (1019)
Q Consensus 554 eeVf~~~~pLV~svLd-G~N~~IfAYGQTGSGKTyTM~ 590 (1019)
++-+......+..++. +...+++-||++|+|||+++.
T Consensus 36 e~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~ 73 (394)
T PRK00411 36 EEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVK 73 (394)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHH
Confidence 3333344444545554 445678999999999999864
No 234
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=77.05 E-value=0.86 Score=42.82 Aligned_cols=17 Identities=35% Similarity=0.374 Sum_probs=15.3
Q ss_pred EEeecccCCCCceeeec
Q 001734 575 IFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 575 IfAYGQTGSGKTyTM~G 591 (1019)
++.+|+||||||+++..
T Consensus 3 ~~i~~~~G~GKT~~~~~ 19 (144)
T cd00046 3 VLLAAPTGSGKTLAALL 19 (144)
T ss_pred EEEECCCCCchhHHHHH
Confidence 57799999999999976
No 235
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=76.92 E-value=26 Score=43.19 Aligned_cols=26 Identities=35% Similarity=0.470 Sum_probs=11.4
Q ss_pred HHhhhcccchhHHHHHHHHHHHHHHH
Q 001734 338 LRLKKENDDRDIEISTLKQDLELAKR 363 (1019)
Q Consensus 338 ~~l~ke~~~~~~e~~~Lk~ele~~k~ 363 (1019)
..|..+.+....+|+.|+.+|+.+++
T Consensus 439 ~~L~~~~ee~k~eie~L~~~l~~~~r 464 (652)
T COG2433 439 SELKRELEELKREIEKLESELERFRR 464 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444443
No 236
>PRK10884 SH3 domain-containing protein; Provisional
Probab=76.14 E-value=25 Score=38.06 Aligned_cols=21 Identities=33% Similarity=0.453 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001734 383 SQKKLQELERLLTVSKKKVEE 403 (1019)
Q Consensus 383 le~~l~e~~~~l~~~~~~~~~ 403 (1019)
|+++.++++.+++.++++++.
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444433
No 237
>KOG3631 consensus Alpha-parvin and related focal adhesion proteins [Cytoskeleton]
Probab=76.03 E-value=5 Score=44.49 Aligned_cols=97 Identities=20% Similarity=0.403 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHhcCCCCCCCCccHHHHHHHchhhHHHHHHHhhhcCCCc--cCCCC--CCCCchhHHHHHHHH-HhCCCC
Q 001734 31 QLSTLVEWLNEMIPHIHLPFEASEEKLRACLVDGTVLCLVLNKLSPDSV--EMGAN--FEPGPANVKRFLAAM-DDMGLP 105 (1019)
Q Consensus 31 r~~e~~~Wie~vlg~~~lp~~~s~edl~~~LrdGviLC~L~N~l~Pgsv--~k~~~--~~~~~eNI~~FL~ac-~~~Glp 105 (1019)
...-+..||.+++-.+.+-.. +|.+-|-||.||-+|..++..=-+ +.+.. .-| -.-+..-|.++ +.+++|
T Consensus 91 l~kvLi~WiN~~L~~erIvVr----~LeEDlfDGqilqkL~ekL~~~klev~evtqse~~Q-kqKLq~Vleavnr~L~~~ 165 (365)
T KOG3631|consen 91 LVKVLIDWINDVLVPERIVVR----SLEEDLFDGQILQKLFEKLAALKLEVAEVTQSEIGQ-KQKLQTVLEAVNRSLQLP 165 (365)
T ss_pred HHHHHHHHHHHhhcchhhhHH----hhHHhhhhhHHHHHHHHHHHhhhccchhhhhhhHHH-HHHHHHHHHHHHHHhcCc
Confidence 445678999998865665433 577888899999999999853222 11110 011 22667788888 789999
Q ss_pred Cccc---ccc-cCCChhhHHHHHHHHHhhhh
Q 001734 106 RFEL---SDL-EQGNMAPVLQCLRSLRASFS 132 (1019)
Q Consensus 106 ~F~~---~DL-E~~n~~~Vv~cL~aL~~~~~ 132 (1019)
..++ +|+ -++|+..++.-|.+|..+|.
T Consensus 166 ~~q~kWsvdsIh~Kdl~ailhLLVaLa~~fr 196 (365)
T KOG3631|consen 166 EWQAKWSVDSIHNKDLVAILHLLVALAKHFR 196 (365)
T ss_pred hhhhccchhhhccchHHHHHHHHHHHHHHcC
Confidence 9444 566 89999999999999998884
No 238
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=75.80 E-value=1e+02 Score=32.36 Aligned_cols=18 Identities=28% Similarity=0.307 Sum_probs=7.6
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 001734 347 RDIEISTLKQDLELAKRT 364 (1019)
Q Consensus 347 ~~~e~~~Lk~ele~~k~~ 364 (1019)
.+..+.++..++...+..
T Consensus 100 l~~~~~~~~~~l~~~~~~ 117 (191)
T PF04156_consen 100 LQERIQELESELEKLKED 117 (191)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444433
No 239
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=75.75 E-value=1.6 Score=41.52 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=16.1
Q ss_pred cceeEEeecccCCCCceeee
Q 001734 571 YNVCIFAYGQTGSGKTYTMS 590 (1019)
Q Consensus 571 ~N~~IfAYGQTGSGKTyTM~ 590 (1019)
....++.+|++|+|||+++.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~ 37 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLAR 37 (151)
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 44568889999999997653
No 240
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=75.26 E-value=40 Score=41.08 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001734 347 RDIEISTLKQDLELAKRTHELHCLQLE 373 (1019)
Q Consensus 347 ~~~e~~~Lk~ele~~k~~~e~~~~~le 373 (1019)
....+..|++||+.+++-||.+..-|-
T Consensus 467 a~~~i~~LqDEL~TTr~NYE~QLs~MS 493 (518)
T PF10212_consen 467 ANQNISRLQDELETTRRNYEEQLSMMS 493 (518)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 344555666666666666666555543
No 241
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=74.80 E-value=1.2e+02 Score=31.97 Aligned_cols=15 Identities=13% Similarity=0.567 Sum_probs=8.8
Q ss_pred hHHHHHHHHHhHhhh
Q 001734 231 SLFNIVNRILDECVE 245 (1019)
Q Consensus 231 ~l~~~~~~~l~~~~~ 245 (1019)
.+..++..+|.++++
T Consensus 23 ~i~~~l~~~l~~~~~ 37 (177)
T PF07798_consen 23 AIMKALREVLNDSLE 37 (177)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455566666666543
No 242
>PLN02939 transferase, transferring glycosyl groups
Probab=74.51 E-value=2.3e+02 Score=37.54 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHhhhhccc
Q 001734 288 EEKYKSRIRVLETLTVGT 305 (1019)
Q Consensus 288 ~~~~~~~~~~le~l~~~~ 305 (1019)
-|..|..|++||.-.+++
T Consensus 165 ~~~~~~~~~~~~~~~~~~ 182 (977)
T PLN02939 165 KEALQGKINILEMRLSET 182 (977)
T ss_pred HHHHHhhHHHHHHHhhhh
Confidence 344567777777755554
No 243
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=74.47 E-value=0.92 Score=43.67 Aligned_cols=19 Identities=32% Similarity=0.436 Sum_probs=13.4
Q ss_pred ceeEEeecccCCCCceeee
Q 001734 572 NVCIFAYGQTGSGKTYTMS 590 (1019)
Q Consensus 572 N~~IfAYGQTGSGKTyTM~ 590 (1019)
+.+++.||++|+|||.++.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~ 22 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIK 22 (131)
T ss_dssp ---EEEEE-TTSSHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHH
Confidence 4578999999999998763
No 244
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=74.34 E-value=1.4e+02 Score=37.72 Aligned_cols=71 Identities=15% Similarity=0.171 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001734 326 IAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLTVSKKKVE 402 (1019)
Q Consensus 326 ~eek~~~~e~~~~~l~ke~~~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le~~l~e~~~~l~~~~~~~~ 402 (1019)
+++...+.|+..-.-.+ .+....--+.|.+.++++...++.+.. .+ ++-.+++..++++-.+|+..+.+.+
T Consensus 117 lqerLelaE~~l~qs~r-ae~lpeveael~qr~~al~~aee~~~~-~e----er~~kl~~~~qe~naeL~rarqree 187 (916)
T KOG0249|consen 117 LQERLELAEPKLQQSLR-AETLPEVEAELAQRNAALTKAEEHSGN-IE----ERTRKLEEQLEELNAELQRARQREK 187 (916)
T ss_pred hhHHHHHhhHhhHhHHh-hhhhhhhHHHHHHHHHHHHHHHHhhcc-HH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555554444 333333334555666555544443222 12 2233444555555555555554444
No 245
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=74.34 E-value=1.6e+02 Score=34.20 Aligned_cols=16 Identities=31% Similarity=0.557 Sum_probs=9.7
Q ss_pred HHHHHhhhhhhhhhhc
Q 001734 477 VILAENRRLYNEVQDL 492 (1019)
Q Consensus 477 ~~l~erR~L~N~vqel 492 (1019)
.++.|||-|+.++..+
T Consensus 193 aLi~ENRyL~erl~q~ 208 (319)
T PF09789_consen 193 ALIMENRYLKERLKQL 208 (319)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456777777655443
No 246
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=74.33 E-value=1.4 Score=54.30 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=24.8
Q ss_pred HHHHHHHcCcceeEEeecccCCCCceeeec
Q 001734 562 PLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 562 pLV~svLdG~N~~IfAYGQTGSGKTyTM~G 591 (1019)
..+..++..-++.|+..|+||||||+||..
T Consensus 306 ~~l~~~~~~~~Glilv~G~tGSGKTTtl~a 335 (564)
T TIGR02538 306 ALFLEAIHKPQGMVLVTGPTGSGKTVSLYT 335 (564)
T ss_pred HHHHHHHHhcCCeEEEECCCCCCHHHHHHH
Confidence 345666777788999999999999999864
No 247
>PRK06921 hypothetical protein; Provisional
Probab=74.28 E-value=1.9 Score=48.07 Aligned_cols=38 Identities=21% Similarity=0.308 Sum_probs=26.4
Q ss_pred HHHHhchHHHHHHHHc---CcceeEEeecccCCCCceeeec
Q 001734 554 EEVFLDTRPLIRSVLD---GYNVCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 554 eeVf~~~~pLV~svLd---G~N~~IfAYGQTGSGKTyTM~G 591 (1019)
..++..+...++.+-. +..-.|+-||++|+||||.+..
T Consensus 96 ~~~~~~~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~a 136 (266)
T PRK06921 96 KDAYECAVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTA 136 (266)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHH
Confidence 3455555666666532 2344688999999999999875
No 248
>PRK10436 hypothetical protein; Provisional
Probab=73.93 E-value=1.5 Score=52.70 Aligned_cols=30 Identities=37% Similarity=0.427 Sum_probs=24.3
Q ss_pred HHHHHHHcCcceeEEeecccCCCCceeeec
Q 001734 562 PLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 562 pLV~svLdG~N~~IfAYGQTGSGKTyTM~G 591 (1019)
..+..++..-++.|+..|+||||||.||.-
T Consensus 208 ~~l~~~~~~~~GliLvtGpTGSGKTTtL~a 237 (462)
T PRK10436 208 AQFRQALQQPQGLILVTGPTGSGKTVTLYS 237 (462)
T ss_pred HHHHHHHHhcCCeEEEECCCCCChHHHHHH
Confidence 345556667788999999999999999964
No 249
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=73.91 E-value=2.3e+02 Score=34.97 Aligned_cols=31 Identities=16% Similarity=0.222 Sum_probs=16.8
Q ss_pred hHhhHHHhhHHHHHHHHHHHHHhHHHHHHHH
Q 001734 421 SYQSFMGCQLGVIQDLRVAFESTKHEVLETK 451 (1019)
Q Consensus 421 ~~~~~l~~Q~~~l~el~~~~~~~k~ei~~~~ 451 (1019)
.++..+..+...|.+.+..+..++.++..++
T Consensus 278 ~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~ 308 (522)
T PF05701_consen 278 ELQSSLASAKKELEEAKKELEKAKEEASSLR 308 (522)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555556666666665555554444
No 250
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=73.80 E-value=2.1e+02 Score=34.42 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=12.2
Q ss_pred hhHHHhhHHHHHHHHHHHHHhHHHHH
Q 001734 423 QSFMGCQLGVIQDLRVAFESTKHEVL 448 (1019)
Q Consensus 423 ~~~l~~Q~~~l~el~~~~~~~k~ei~ 448 (1019)
..-+..+++.+++|+..-..++.+|.
T Consensus 216 ~~~l~~~q~~l~eL~~~~~~L~~~Ia 241 (420)
T COG4942 216 NSELSADQKKLEELRANESRLKNEIA 241 (420)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33344444555555554444444443
No 251
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=73.76 E-value=1.6 Score=52.81 Aligned_cols=30 Identities=30% Similarity=0.364 Sum_probs=24.5
Q ss_pred HHHHHHHcCcceeEEeecccCCCCceeeec
Q 001734 562 PLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 562 pLV~svLdG~N~~IfAYGQTGSGKTyTM~G 591 (1019)
..+..++..-++.|+..|+||||||.||..
T Consensus 232 ~~l~~~~~~~~GlilitGptGSGKTTtL~a 261 (486)
T TIGR02533 232 SRFERLIRRPHGIILVTGPTGSGKTTTLYA 261 (486)
T ss_pred HHHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 345566777778899999999999999964
No 252
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=73.21 E-value=85 Score=35.46 Aligned_cols=51 Identities=29% Similarity=0.487 Sum_probs=33.2
Q ss_pred chhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001734 346 DRDIEISTLKQDLELAKRTH-ELHCLQLEEQIYETKIESQKKLQELERLLTVSKKKVEELE 405 (1019)
Q Consensus 346 ~~~~e~~~Lk~ele~~k~~~-e~~~~~le~~~~~~k~~le~~l~e~~~~l~~~~~~~~~le 405 (1019)
+.+.||..||-+|.-+++.| |+.|..-|.+. -|||.+.++..++.-|+.+.
T Consensus 86 dRetEI~eLksQL~RMrEDWIEEECHRVEAQL---------ALKEARkEIkQLkQvieTmr 137 (305)
T PF15290_consen 86 DRETEIDELKSQLARMREDWIEEECHRVEAQL---------ALKEARKEIKQLKQVIETMR 137 (305)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH
Confidence 36889999999999999885 56677766653 24444444444444444433
No 253
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=73.02 E-value=2.4e+02 Score=34.81 Aligned_cols=7 Identities=29% Similarity=0.344 Sum_probs=3.6
Q ss_pred HHHHhch
Q 001734 554 EEVFLDT 560 (1019)
Q Consensus 554 eeVf~~~ 560 (1019)
++||..+
T Consensus 279 ee~~~~~ 285 (514)
T TIGR03319 279 EEMVEKA 285 (514)
T ss_pred HHHHHHH
Confidence 5555544
No 254
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=72.87 E-value=1.6e+02 Score=32.67 Aligned_cols=35 Identities=17% Similarity=0.132 Sum_probs=21.3
Q ss_pred HHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001734 333 EEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEE 374 (1019)
Q Consensus 333 ~e~~~~~l~ke~~~~~~e~~~Lk~ele~~k~~~e~~~~~le~ 374 (1019)
.++.+.++.|++ ...-..++..|+.|+..|.+.+.
T Consensus 105 ~e~~~ek~~K~~-------~~~~k~~~ksKk~Ye~~Cke~~~ 139 (240)
T cd07672 105 IELIMDAIHKQR-------AMQFKKTMESKKNYEQKCRDKDE 139 (240)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555532 33344677788888888877554
No 255
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=72.67 E-value=1.8 Score=43.24 Aligned_cols=28 Identities=32% Similarity=0.465 Sum_probs=22.2
Q ss_pred HHHHHHHcCcceeEEeecccCCCCceeeec
Q 001734 562 PLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 562 pLV~svLdG~N~~IfAYGQTGSGKTyTM~G 591 (1019)
.++..++.|.| ++..|+||||||+....
T Consensus 6 ~~~~~i~~~~~--~li~aptGsGKT~~~~~ 33 (169)
T PF00270_consen 6 EAIEAIISGKN--VLISAPTGSGKTLAYIL 33 (169)
T ss_dssp HHHHHHHTTSE--EEEECSTTSSHHHHHHH
T ss_pred HHHHHHHcCCC--EEEECCCCCccHHHHHH
Confidence 34556667777 67899999999999876
No 256
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=72.57 E-value=2.2e+02 Score=34.28 Aligned_cols=27 Identities=15% Similarity=0.238 Sum_probs=13.1
Q ss_pred HHhhhhccchhhHHHHHHHHHHHHHHh
Q 001734 297 VLETLTVGTTEENQVVANQLERIKTEK 323 (1019)
Q Consensus 297 ~le~l~~~~~ee~~~~~~~l~~l~~e~ 323 (1019)
.||.+.....-+++.|..-++|.|.|+
T Consensus 116 eLEe~C~eQAakIeQLNrLVqQyK~Er 142 (488)
T PF06548_consen 116 ELEEVCAEQAAKIEQLNRLVQQYKHER 142 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 344444444445555554455555443
No 257
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=72.56 E-value=2.7e+02 Score=35.25 Aligned_cols=75 Identities=20% Similarity=0.313 Sum_probs=41.6
Q ss_pred CCCcchHHHHHHHHHhHhhhhcCC------CCchHHHHH---HHHHHHHHHHH----hhhhhHH---HhhhhhHHHhhHH
Q 001734 226 NASTKSLFNIVNRILDECVERKNG------DAPHRVACL---LRKVVPLIERR----TATQYQN---FKNQNNLFRAREE 289 (1019)
Q Consensus 226 ~~~~~~l~~~~~~~l~~~~~~~~~------~~~~~~~~~---l~kvv~e~e~~----is~q~~~---~~~q~~~~~~~~~ 289 (1019)
|..|+-|-.++..-...+.|+..- |--+++..+ +.|.|..||-= =..|.++ ++.+..-|.-.++
T Consensus 150 nnaTR~lCNlLKeT~~rsaEK~~~yE~EREET~qly~~l~~niekMi~aFEeLR~qAEn~r~EM~fKlKE~~~k~~~lee 229 (786)
T PF05483_consen 150 NNATRHLCNLLKETCQRSAEKMKKYEYEREETRQLYMDLNENIEKMIAAFEELRVQAENDRQEMHFKLKEDYEKFEDLEE 229 (786)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888777766665432 333333333 34555666421 1222222 4555666667777
Q ss_pred HHHHHHHHHhh
Q 001734 290 KYKSRIRVLET 300 (1019)
Q Consensus 290 ~~~~~~~~le~ 300 (1019)
.|+..+++-|-
T Consensus 230 ey~~E~n~kEk 240 (786)
T PF05483_consen 230 EYKKEVNDKEK 240 (786)
T ss_pred HHHHHhhhHHH
Confidence 77666655543
No 258
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=72.23 E-value=2.3e+02 Score=34.23 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=14.5
Q ss_pred HHHHHHHHHhhhhhhhhhhccC
Q 001734 473 EKYHVILAENRRLYNEVQDLKG 494 (1019)
Q Consensus 473 ~~~~~~l~erR~L~N~vqelkG 494 (1019)
+++..+..++-++|.++..||.
T Consensus 448 ~r~~~~eqe~ek~~kqiekLK~ 469 (488)
T PF06548_consen 448 ERAMDAEQENEKAKKQIEKLKR 469 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445577788888887764
No 259
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=72.23 E-value=1.3 Score=47.39 Aligned_cols=17 Identities=47% Similarity=0.720 Sum_probs=14.4
Q ss_pred eEEeecccCCCCceeee
Q 001734 574 CIFAYGQTGSGKTYTMS 590 (1019)
Q Consensus 574 ~IfAYGQTGSGKTyTM~ 590 (1019)
-+..+|.||||||+|+-
T Consensus 25 H~~I~G~TGsGKS~~~~ 41 (229)
T PF01935_consen 25 HIAIFGTTGSGKSNTVK 41 (229)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 45678999999999984
No 260
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=72.14 E-value=2.1 Score=51.24 Aligned_cols=52 Identities=23% Similarity=0.375 Sum_probs=35.2
Q ss_pred ceeeeeceeeCCCCChHHHHhchHHHHHHH--HcC--cceeEEeecccCCCCceeeec
Q 001734 538 HRLFKFNKVFGPEASQEEVFLDTRPLIRSV--LDG--YNVCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 538 ~k~F~FD~VF~~~atQeeVf~~~~pLV~sv--LdG--~N~~IfAYGQTGSGKTyTM~G 591 (1019)
...|+||.-+.. .++...|..+..+.+.. ..| ||. +|-||++|+||||.+..
T Consensus 105 ~~~~tFdnFv~g-~~N~~a~~~a~~~a~~~~~~~~~~~np-l~L~G~~G~GKTHLl~A 160 (445)
T PRK12422 105 DPLMTFANFLVT-PENDLPHRILQEFTKVSEQGKGFPFNP-IYLFGPEGSGKTHLMQA 160 (445)
T ss_pred CccccccceeeC-CcHHHHHHHHHHHHhccccccCCCCce-EEEEcCCCCCHHHHHHH
Confidence 356999997753 35556666666555433 223 454 67899999999999865
No 261
>PF15294 Leu_zip: Leucine zipper
Probab=72.13 E-value=74 Score=36.08 Aligned_cols=40 Identities=18% Similarity=0.343 Sum_probs=17.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHH
Q 001734 315 QLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTL 354 (1019)
Q Consensus 315 ~l~~l~~e~~k~eek~~~~e~~~~~l~ke~~~~~~e~~~L 354 (1019)
++..|+.|..++.++.+..+......++|+...+..+..|
T Consensus 133 Ei~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~l 172 (278)
T PF15294_consen 133 EIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKEL 172 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555544444444444444444444333333
No 262
>PF12846 AAA_10: AAA-like domain
Probab=72.09 E-value=1.3 Score=48.50 Aligned_cols=19 Identities=42% Similarity=0.574 Sum_probs=16.5
Q ss_pred ceeEEeecccCCCCceeee
Q 001734 572 NVCIFAYGQTGSGKTYTMS 590 (1019)
Q Consensus 572 N~~IfAYGQTGSGKTyTM~ 590 (1019)
|..++..|.||||||++|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~ 19 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK 19 (304)
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 5568899999999999885
No 263
>PF13245 AAA_19: Part of AAA domain
Probab=72.05 E-value=1.7 Score=39.36 Aligned_cols=27 Identities=30% Similarity=0.450 Sum_probs=18.6
Q ss_pred HHHHHcCcceeEEeecccCCCCceeeec
Q 001734 564 IRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 564 V~svLdG~N~~IfAYGQTGSGKTyTM~G 591 (1019)
|..++. -+..+..-|+.|||||+|+..
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~~~ 29 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTLAA 29 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHHHH
Confidence 455555 233344599999999999864
No 264
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=72.01 E-value=1.8 Score=49.92 Aligned_cols=29 Identities=31% Similarity=0.487 Sum_probs=21.6
Q ss_pred HHHHHHcCcceeEEeecccCCCCceeeec
Q 001734 563 LIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 563 LV~svLdG~N~~IfAYGQTGSGKTyTM~G 591 (1019)
.+..++.--.+.|+-.|+||||||+||..
T Consensus 113 ~l~~~~~~~~g~ili~G~tGSGKTT~l~a 141 (343)
T TIGR01420 113 VLRELAERPRGLILVTGPTGSGKSTTLAS 141 (343)
T ss_pred HHHHHHhhcCcEEEEECCCCCCHHHHHHH
Confidence 44445543356789999999999999853
No 265
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=71.95 E-value=1.3 Score=41.39 Aligned_cols=19 Identities=37% Similarity=0.461 Sum_probs=16.4
Q ss_pred eeEEeecccCCCCceeeec
Q 001734 573 VCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 573 ~~IfAYGQTGSGKTyTM~G 591 (1019)
..++-+|++|||||+++..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~ 21 (148)
T smart00382 3 EVILIVGPPGSGKTTLARA 21 (148)
T ss_pred CEEEEECCCCCcHHHHHHH
Confidence 4678899999999999865
No 266
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=71.90 E-value=1.4 Score=56.26 Aligned_cols=32 Identities=28% Similarity=0.483 Sum_probs=23.5
Q ss_pred chHHHHHHHHc--CcceeEEeecccCCCCceeee
Q 001734 559 DTRPLIRSVLD--GYNVCIFAYGQTGSGKTYTMS 590 (1019)
Q Consensus 559 ~~~pLV~svLd--G~N~~IfAYGQTGSGKTyTM~ 590 (1019)
.+..++..++. |-+.|||.||++|+|||.|+-
T Consensus 766 eLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK 799 (1164)
T PTZ00112 766 EVHGFLESGIKQSGSNQILYISGMPGTGKTATVY 799 (1164)
T ss_pred HHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHH
Confidence 34455565554 445678999999999999874
No 267
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=71.59 E-value=69 Score=36.55 Aligned_cols=46 Identities=13% Similarity=0.247 Sum_probs=31.2
Q ss_pred HHHhhhhhHHHhhHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHH
Q 001734 275 QNFKNQNNLFRAREEKYKSRIRVLETLTVGTTEENQVVANQLERIK 320 (1019)
Q Consensus 275 ~~~~~q~~~~~~~~~~~~~~~~~le~l~~~~~ee~~~~~~~l~~l~ 320 (1019)
|.+.+||.-++...|-|+...++|+.+..+.--|++.|...+.+|.
T Consensus 3 dd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELE 48 (351)
T PF07058_consen 3 DDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELE 48 (351)
T ss_pred hhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666667777777778888777777677777766555544
No 268
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=71.29 E-value=2.8e+02 Score=34.86 Aligned_cols=60 Identities=18% Similarity=0.182 Sum_probs=32.7
Q ss_pred HHHHHHhhHHHHHhhhhhHHHHHHHHHHHHH-HHHHh--hhhhhhhhhccCCEEEE---eecCCCC
Q 001734 447 VLETKKNYSKEFDCLGLNLKRLIDAAEKYHV-ILAEN--RRLYNEVQDLKGNIRVY---CRIRPFL 506 (1019)
Q Consensus 447 i~~~~~~~~~e~~~l~~~l~~l~~~~~~~~~-~l~er--R~L~N~vqelkGnIrV~---~RVRP~~ 506 (1019)
++..+..+..++...=.+|.++..+....-. ..+.| .+|+--.+-++|+++-- -|.+|+.
T Consensus 432 ~l~ernl~~~qvg~aL~rLrgie~aL~~~~~~~~e~r~a~q~w~ac~nlk~s~~~g~~e~r~~pLg 497 (657)
T KOG1854|consen 432 VLQERNLHSSQVGKALSRLRGIEQALQERVRAELEARKAKQLWLACSNLKDSLNKGHYEMRRHPLG 497 (657)
T ss_pred HHHHhcchHhHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhccccccccCchh
Confidence 3333444444433222334444444433333 33333 36888888999998887 7888864
No 269
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=71.24 E-value=1.4 Score=46.65 Aligned_cols=18 Identities=39% Similarity=0.593 Sum_probs=16.1
Q ss_pred eeEEeecccCCCCceeee
Q 001734 573 VCIFAYGQTGSGKTYTMS 590 (1019)
Q Consensus 573 ~~IfAYGQTGSGKTyTM~ 590 (1019)
+.|+-.|+||||||+|+.
T Consensus 2 GlilI~GptGSGKTTll~ 19 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 578899999999999985
No 270
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=71.08 E-value=2.7e+02 Score=34.63 Aligned_cols=21 Identities=14% Similarity=0.246 Sum_probs=9.6
Q ss_pred HHHHHHHHHhHHHHHHHHHhh
Q 001734 434 QDLRVAFESTKHEVLETKKNY 454 (1019)
Q Consensus 434 ~el~~~~~~~k~ei~~~~~~~ 454 (1019)
..++.....+..++...+..|
T Consensus 316 ~~~~~~~~~l~~e~~~v~~sY 336 (560)
T PF06160_consen 316 EHAKEQNKELKEELERVSQSY 336 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 344444444444444444444
No 271
>PRK12704 phosphodiesterase; Provisional
Probab=71.06 E-value=2.6e+02 Score=34.53 Aligned_cols=13 Identities=15% Similarity=0.140 Sum_probs=7.3
Q ss_pred hhhhhhhhhhccC
Q 001734 482 NRRLYNEVQDLKG 494 (1019)
Q Consensus 482 rR~L~N~vqelkG 494 (1019)
|+-+-..+|..-+
T Consensus 191 ~~i~~~a~qr~a~ 203 (520)
T PRK12704 191 KEILAQAIQRCAA 203 (520)
T ss_pred HHHHHHHHHhhcc
Confidence 4456666666554
No 272
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=70.76 E-value=1.4 Score=56.98 Aligned_cols=59 Identities=34% Similarity=0.385 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001734 347 RDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLTVSKKKVEELE 405 (1019)
Q Consensus 347 ~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le~~l~e~~~~l~~~~~~~~~le 405 (1019)
....++.+..+|..++..|+......-....+++..|..++.++...++.....+..|+
T Consensus 290 l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~Le 348 (859)
T PF01576_consen 290 LERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLE 348 (859)
T ss_dssp -----------------------------------------------------------
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777777777777665554444556667777777777777666655555554
No 273
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=70.67 E-value=4.2e+02 Score=36.67 Aligned_cols=11 Identities=18% Similarity=0.302 Sum_probs=6.1
Q ss_pred HHHHHHHHhhh
Q 001734 262 VVPLIERRTAT 272 (1019)
Q Consensus 262 vv~e~e~~is~ 272 (1019)
-|.|++++|..
T Consensus 743 ri~el~~~Iae 753 (1353)
T TIGR02680 743 RIAELDARLAA 753 (1353)
T ss_pred HHHHHHHHHHH
Confidence 45666666543
No 274
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=70.64 E-value=1.8 Score=48.75 Aligned_cols=44 Identities=23% Similarity=0.318 Sum_probs=27.5
Q ss_pred eeeceeeCCCCChHHHHhchHHHHHHHHcCcceeEEeecccCCCCceeeec
Q 001734 541 FKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 541 F~FD~VF~~~atQeeVf~~~~pLV~svLdG~N~~IfAYGQTGSGKTyTM~G 591 (1019)
-+||.+.+ |+++......++. .|-...++-||++|+|||++...
T Consensus 12 ~~~~~~~g----~~~~~~~L~~~~~---~~~~~~lll~Gp~GtGKT~la~~ 55 (337)
T PRK12402 12 ALLEDILG----QDEVVERLSRAVD---SPNLPHLLVQGPPGSGKTAAVRA 55 (337)
T ss_pred CcHHHhcC----CHHHHHHHHHHHh---CCCCceEEEECCCCCCHHHHHHH
Confidence 35677664 4444443333332 34433578899999999998743
No 275
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=70.60 E-value=2.9e+02 Score=34.67 Aligned_cols=71 Identities=10% Similarity=0.118 Sum_probs=45.9
Q ss_pred HhhHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHHHHHHHhh-hh--hhhhhhccCCEE
Q 001734 427 GCQLGVIQDLRVAFESTKHEVLETKKNYSKEFDCLGLNLKRLIDAAEKYHVILAENR-RL--YNEVQDLKGNIR 497 (1019)
Q Consensus 427 ~~Q~~~l~el~~~~~~~k~ei~~~~~~~~~e~~~l~~~l~~l~~~~~~~~~~l~erR-~L--~N~vqelkGnIr 497 (1019)
+.+...+-.+...+..+-.+|...+....++.+....++..|......|..++++=+ +| ++.+.++|--++
T Consensus 281 ~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~sDYeeIK~ELs 354 (629)
T KOG0963|consen 281 DALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSRSDYEEIKKELS 354 (629)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHH
Confidence 333333444666677777788888888888888777888888877777777776433 33 344555554433
No 276
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=70.49 E-value=1.4e+02 Score=36.07 Aligned_cols=156 Identities=19% Similarity=0.233 Sum_probs=0.0
Q ss_pred hhhhcCCCCch------HHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHhhHHHHHHHHHHHhhhhccchh---hHHHHH
Q 001734 243 CVERKNGDAPH------RVACLLRKVVPLIERRTATQYQNFKNQNNLFRAREEKYKSRIRVLETLTVGTTE---ENQVVA 313 (1019)
Q Consensus 243 ~~~~~~~~~~~------~~~~~l~kvv~e~e~~is~q~~~~~~q~~~~~~~~~~~~~~~~~le~l~~~~~e---e~~~~~ 313 (1019)
++|+|..|+-+ +...+++|.-+-||.=|--.+.-+=..|.+-+..--. ..+|....+.-.| |.+.+.
T Consensus 342 yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnL----qe~la~tqk~LqEsr~eKetLq 417 (527)
T PF15066_consen 342 YLEKKVKELQMKITKQQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNL----QEALANTQKHLQESRNEKETLQ 417 (527)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHH----HHHHHHHHHHHHHHHhhHHHHH
Q ss_pred HHHHHHHHHhhhHHHHHHHH---------------------HHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001734 314 NQLERIKTEKTNIAQKEKLE---------------------EQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQL 372 (1019)
Q Consensus 314 ~~l~~l~~e~~k~eek~~~~---------------------e~~~~~l~ke~~~~~~e~~~Lk~ele~~k~~~e~~~~~l 372 (1019)
-+++.+|..--.++|+-+.+ |++|.||...+...+.-..+.=+-|...|++-|+..+.|
T Consensus 418 lelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ~lkgelEkat~SALdlLkrEKe~~EqefLsl 497 (527)
T PF15066_consen 418 LELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQQLKGELEKATTSALDLLKREKETREQEFLSL 497 (527)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001734 373 EEQIYETKIESQKKLQELERLLTVSKKKVE 402 (1019)
Q Consensus 373 e~~~~~~k~~le~~l~e~~~~l~~~~~~~~ 402 (1019)
...-.+.+.+.-+..+.|+..++++-.+|+
T Consensus 498 qeEfQk~ekenl~ERqkLKs~leKLvaqvk 527 (527)
T PF15066_consen 498 QEEFQKHEKENLEERQKLKSRLEKLVAQVK 527 (527)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhcC
No 277
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=70.00 E-value=1.4e+02 Score=30.71 Aligned_cols=19 Identities=32% Similarity=0.403 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001734 386 KLQELERLLTVSKKKVEEL 404 (1019)
Q Consensus 386 ~l~e~~~~l~~~~~~~~~l 404 (1019)
.+..++.+|..++..-+.|
T Consensus 67 el~~L~~EL~~l~sEk~~L 85 (140)
T PF10473_consen 67 ELNQLELELDTLRSEKENL 85 (140)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444433333
No 278
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=69.98 E-value=2.1 Score=50.05 Aligned_cols=28 Identities=32% Similarity=0.358 Sum_probs=20.3
Q ss_pred HHHHHHcCcceeEEeecccCCCCceeeec
Q 001734 563 LIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 563 LV~svLdG~N~~IfAYGQTGSGKTyTM~G 591 (1019)
+++.++. .++.|+..|+||||||+||..
T Consensus 141 ~~~~l~~-~~GlilI~G~TGSGKTT~l~a 168 (372)
T TIGR02525 141 LFNSLLP-AAGLGLICGETGSGKSTLAAS 168 (372)
T ss_pred HHHHHHh-cCCEEEEECCCCCCHHHHHHH
Confidence 4444443 455688899999999999853
No 279
>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function.; PDB: 2EE7_A.
Probab=69.75 E-value=4.2 Score=42.09 Aligned_cols=87 Identities=20% Similarity=0.408 Sum_probs=50.9
Q ss_pred HHHHHHHhcCCCCCCCCccHHHHHHHchhhHHHHHHHhhhcCCCccCC-----CCCCCCchhHHHH-HHHHHhCCCCCcc
Q 001734 35 LVEWLNEMIPHIHLPFEASEEKLRACLVDGTVLCLVLNKLSPDSVEMG-----ANFEPGPANVKRF-LAAMDDMGLPRFE 108 (1019)
Q Consensus 35 ~~~Wie~vlg~~~lp~~~s~edl~~~LrdGviLC~L~N~l~Pgsv~k~-----~~~~~~~eNI~~F-L~ac~~~Glp~F~ 108 (1019)
+..||.. ++ ...|.. .++..+.||++++.++.+..|..|..- ......+.|-..| .+.+..+|++ |.
T Consensus 1 l~~WL~~-l~-ls~~~~----n~~rDfsdG~lvAEIl~~y~p~~vdlh~y~~~~s~~~Kl~NW~~Ln~kvl~kl~~~-l~ 73 (158)
T PF06294_consen 1 LLKWLQS-LD-LSRPPK----NIRRDFSDGYLVAEILSRYYPKLVDLHNYSNGNSVAQKLNNWETLNEKVLKKLGIK-LD 73 (158)
T ss_dssp HHHHHHH-S---S--SS-----HHHHHTTSHHHHHHHHHH-TTT---SS----SSHHHHHHHHHHHHHHTTGGGT-----
T ss_pred ChHHHhc-CC-CCCCCC----chHHHcccccHHHHHHHHHCCCCccccccCCCCCHHHHHHHHHHHHHHHHHHcCCC-CC
Confidence 4689999 54 344333 578888999999999999999988321 1112334588888 7778888886 55
Q ss_pred ccccc------CCChhhHHHHHHHHH
Q 001734 109 LSDLE------QGNMAPVLQCLRSLR 128 (1019)
Q Consensus 109 ~~DLE------~~n~~~Vv~cL~aL~ 128 (1019)
..+++ .|-...++.+|...-
T Consensus 74 ~~~i~~i~~~~~Gaae~lL~~L~~~l 99 (158)
T PF06294_consen 74 KEDIEGIINCKPGAAESLLYQLYTKL 99 (158)
T ss_dssp HHHHHHHHTT-TTTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 54442 344566666665544
No 280
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=69.57 E-value=3.7e+02 Score=35.54 Aligned_cols=10 Identities=40% Similarity=0.441 Sum_probs=6.8
Q ss_pred HhHHHHHHHH
Q 001734 754 KSLSALGDVI 763 (1019)
Q Consensus 754 kSLsaLg~VI 763 (1019)
||+-||.-++
T Consensus 1103 KsvvALaLIF 1112 (1200)
T KOG0964|consen 1103 KSVVALALIF 1112 (1200)
T ss_pred HHHHHHHHHH
Confidence 6888886544
No 281
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=69.00 E-value=2 Score=47.30 Aligned_cols=29 Identities=38% Similarity=0.550 Sum_probs=19.6
Q ss_pred HHHHHHHHcCcceeEEeecccCCCCceeee
Q 001734 561 RPLIRSVLDGYNVCIFAYGQTGSGKTYTMS 590 (1019)
Q Consensus 561 ~pLV~svLdG~N~~IfAYGQTGSGKTyTM~ 590 (1019)
..++..++.+ .+.|+..|.||||||.+|.
T Consensus 117 ~~~l~~~v~~-~~~ili~G~tGSGKTT~l~ 145 (270)
T PF00437_consen 117 AEFLRSAVRG-RGNILISGPTGSGKTTLLN 145 (270)
T ss_dssp HHHHHHCHHT-TEEEEEEESTTSSHHHHHH
T ss_pred HHHHhhcccc-ceEEEEECCCccccchHHH
Confidence 3344443333 4567778999999999984
No 282
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=68.77 E-value=2.4 Score=49.42 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=18.2
Q ss_pred cceeEEeecccCCCCceeeec
Q 001734 571 YNVCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 571 ~N~~IfAYGQTGSGKTyTM~G 591 (1019)
-.+.|+..|+||||||.||..
T Consensus 133 ~~glilI~GpTGSGKTTtL~a 153 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAA 153 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHH
Confidence 467899999999999999853
No 283
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=68.47 E-value=2.5e+02 Score=33.26 Aligned_cols=29 Identities=7% Similarity=0.141 Sum_probs=14.7
Q ss_pred hhhhhHHHhhhhhHHHhhHHHHHHHHHHH
Q 001734 270 TATQYQNFKNQNNLFRAREEKYKSRIRVL 298 (1019)
Q Consensus 270 is~q~~~~~~q~~~~~~~~~~~~~~~~~l 298 (1019)
+..|.+.++.+..--..+...|+.+.+++
T Consensus 176 l~~ql~~~~~~l~~ae~~l~~fr~~~~i~ 204 (444)
T TIGR03017 176 FVQQIAALREDLARAQSKLSAYQQEKGIV 204 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 34444444444444455556666654444
No 284
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=68.31 E-value=84 Score=40.16 Aligned_cols=22 Identities=18% Similarity=0.181 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001734 384 QKKLQELERLLTVSKKKVEELE 405 (1019)
Q Consensus 384 e~~l~e~~~~l~~~~~~~~~le 405 (1019)
...+..++.+.+.++.+++.++
T Consensus 565 ~~~l~~L~~En~~L~~~l~~le 586 (722)
T PF05557_consen 565 KSTLEALQAENEDLLARLRSLE 586 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 3444555555555555555544
No 285
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=68.26 E-value=76 Score=35.86 Aligned_cols=21 Identities=10% Similarity=0.238 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHH
Q 001734 432 VIQDLRVAFESTKHEVLETKK 452 (1019)
Q Consensus 432 ~l~el~~~~~~~k~ei~~~~~ 452 (1019)
+|+|.|.+++++|+-|..++.
T Consensus 118 ALKEARkEIkQLkQvieTmrs 138 (305)
T PF15290_consen 118 ALKEARKEIKQLKQVIETMRS 138 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 456666666666666655543
No 286
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=68.19 E-value=1.9e+02 Score=31.59 Aligned_cols=39 Identities=21% Similarity=0.320 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHH
Q 001734 330 EKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELH 368 (1019)
Q Consensus 330 ~~~~e~~~~~l~ke~~~~~~e~~~Lk~ele~~k~~~e~~ 368 (1019)
+.+...++.++.++.+.....+.++......+-+.|+..
T Consensus 64 ~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~ 102 (207)
T PF05010_consen 64 KELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQ 102 (207)
T ss_pred HHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 445566677777777777666666666666565666653
No 287
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=68.02 E-value=1.6e+02 Score=35.03 Aligned_cols=28 Identities=11% Similarity=0.201 Sum_probs=16.0
Q ss_pred HhHhhHHHhhHHHHHHHHHHHHHhHHHH
Q 001734 420 HSYQSFMGCQLGVIQDLRVAFESTKHEV 447 (1019)
Q Consensus 420 ~~~~~~l~~Q~~~l~el~~~~~~~k~ei 447 (1019)
.++..+++.++.++..|+..+..+...|
T Consensus 265 eqlNd~~elHq~Ei~~LKqeLa~~EEK~ 292 (395)
T PF10267_consen 265 EQLNDLTELHQNEIYNLKQELASMEEKM 292 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3445556666666666666655554443
No 288
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=67.80 E-value=4.5e+02 Score=35.89 Aligned_cols=15 Identities=13% Similarity=0.169 Sum_probs=10.7
Q ss_pred chhHHHHHHHHHHHh
Q 001734 601 GVNYRALNDLFEISE 615 (1019)
Q Consensus 601 GIipRal~~LF~~~~ 615 (1019)
|-|-+++.+|+....
T Consensus 1127 eeiN~iI~elW~~tY 1141 (1294)
T KOG0962|consen 1127 EEINRIIRELWRKTY 1141 (1294)
T ss_pred HHHHHHHHHHHHhcc
Confidence 667778888877544
No 289
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=67.76 E-value=2.1e+02 Score=31.91 Aligned_cols=18 Identities=6% Similarity=0.204 Sum_probs=8.1
Q ss_pred chHHHHHHHHHHHHHHHH
Q 001734 252 PHRVACLLRKVVPLIERR 269 (1019)
Q Consensus 252 ~~~~~~~l~kvv~e~e~~ 269 (1019)
|+.+.+-+.....++...
T Consensus 19 ~~~l~~~~e~~~~~L~~~ 36 (264)
T PF06008_consen 19 PYKLLSSIEDLTNQLRSY 36 (264)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444443
No 290
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=67.67 E-value=2.7 Score=46.78 Aligned_cols=30 Identities=37% Similarity=0.504 Sum_probs=22.9
Q ss_pred HHHHHHHcCcceeEEeecccCCCCceeeec
Q 001734 562 PLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 562 pLV~svLdG~N~~IfAYGQTGSGKTyTM~G 591 (1019)
..+..++..-.+.|+-.|+||||||+||..
T Consensus 70 ~~l~~~~~~~~GlilisG~tGSGKTT~l~a 99 (264)
T cd01129 70 EIFRKLLEKPHGIILVTGPTGSGKTTTLYS 99 (264)
T ss_pred HHHHHHHhcCCCEEEEECCCCCcHHHHHHH
Confidence 345566665566788899999999999853
No 291
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=67.57 E-value=1.4e+02 Score=29.89 Aligned_cols=15 Identities=20% Similarity=0.326 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 001734 388 QELERLLTVSKKKVE 402 (1019)
Q Consensus 388 ~e~~~~l~~~~~~~~ 402 (1019)
..++..+...+..+.
T Consensus 62 ~~lr~e~~~~~~~~~ 76 (132)
T PF07926_consen 62 QQLREELQELQQEIN 76 (132)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 292
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=67.28 E-value=4.2e+02 Score=35.33 Aligned_cols=38 Identities=26% Similarity=0.459 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHHhhhcccchh-HHHHHHHHHHHHHH
Q 001734 325 NIAQKEKLEEQNALRLKKENDDRD-IEISTLKQDLELAK 362 (1019)
Q Consensus 325 k~eek~~~~e~~~~~l~ke~~~~~-~e~~~Lk~ele~~k 362 (1019)
.++|+.+++.++-.|+....+..+ .-|..|.++|+.+.
T Consensus 1135 nlqqElklLRnEK~Rmh~~~dkVDFSDIEkLE~qLq~~~ 1173 (1439)
T PF12252_consen 1135 NLQQELKLLRNEKIRMHSGTDKVDFSDIEKLEKQLQVIH 1173 (1439)
T ss_pred HHHHHHHHHHhHHHhhccCCCcccHHHHHHHHHHHHHhh
Confidence 355666666666666665555433 34566777776655
No 293
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=66.90 E-value=3.6 Score=44.87 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=17.7
Q ss_pred HcCcceeEEeecccCCCCceeee
Q 001734 568 LDGYNVCIFAYGQTGSGKTYTMS 590 (1019)
Q Consensus 568 LdG~N~~IfAYGQTGSGKTyTM~ 590 (1019)
+......++-+|++|+|||+++-
T Consensus 39 ~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 39 LSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred HhcCCCEEEEEcCCCCCHHHHHH
Confidence 44445578889999999998764
No 294
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=66.59 E-value=2.5e+02 Score=32.40 Aligned_cols=32 Identities=16% Similarity=0.430 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 001734 384 QKKLQELERLLTVSKKKVEELESLSESKSQRW 415 (1019)
Q Consensus 384 e~~l~e~~~~l~~~~~~~~~le~~~~~~~~~~ 415 (1019)
+.-...++.+++.+.+.++.||.-...+...|
T Consensus 236 Ne~F~tfk~Emekm~Kk~kklEKE~~~~k~k~ 267 (309)
T PF09728_consen 236 NEVFETFKKEMEKMSKKIKKLEKENQTWKSKW 267 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455677777777777777776655555444
No 295
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=66.28 E-value=3.3e+02 Score=33.69 Aligned_cols=13 Identities=23% Similarity=0.330 Sum_probs=7.9
Q ss_pred hhhhhhhhhhccC
Q 001734 482 NRRLYNEVQDLKG 494 (1019)
Q Consensus 482 rR~L~N~vqelkG 494 (1019)
|+-+-..+|..-+
T Consensus 185 ~~i~~~aiqr~a~ 197 (514)
T TIGR03319 185 KEILATAIQRYAG 197 (514)
T ss_pred HHHHHHHHHhccc
Confidence 4556666666654
No 296
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=65.99 E-value=2.9 Score=44.37 Aligned_cols=29 Identities=24% Similarity=0.385 Sum_probs=21.7
Q ss_pred HHHHHHHcCcceeEEeecccCCCCceeee
Q 001734 562 PLIRSVLDGYNVCIFAYGQTGSGKTYTMS 590 (1019)
Q Consensus 562 pLV~svLdG~N~~IfAYGQTGSGKTyTM~ 590 (1019)
..|..++...+-.++..|+.||||||+|.
T Consensus 8 ~a~~~~l~~~~~~~~l~G~aGtGKT~~l~ 36 (196)
T PF13604_consen 8 EAVRAILTSGDRVSVLQGPAGTGKTTLLK 36 (196)
T ss_dssp HHHHHHHHCTCSEEEEEESTTSTHHHHHH
T ss_pred HHHHHHHhcCCeEEEEEECCCCCHHHHHH
Confidence 45666776555556668999999999874
No 297
>PF15294 Leu_zip: Leucine zipper
Probab=65.90 E-value=1.8e+02 Score=33.01 Aligned_cols=17 Identities=35% Similarity=0.563 Sum_probs=7.4
Q ss_pred HHHHHHHHhHHHHHHHH
Q 001734 435 DLRVAFESTKHEVLETK 451 (1019)
Q Consensus 435 el~~~~~~~k~ei~~~~ 451 (1019)
.|+..+...++++...+
T Consensus 219 ~L~e~L~~~KhelL~~Q 235 (278)
T PF15294_consen 219 ALEETLQSCKHELLRVQ 235 (278)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 34444444444444443
No 298
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=65.76 E-value=3.8e+02 Score=34.33 Aligned_cols=15 Identities=13% Similarity=0.233 Sum_probs=8.3
Q ss_pred chHHHHHHHHHHHHH
Q 001734 252 PHRVACLLRKVVPLI 266 (1019)
Q Consensus 252 ~~~~~~~l~kvv~e~ 266 (1019)
|...+.+++.+++.|
T Consensus 166 P~~Aa~iaN~la~~Y 180 (754)
T TIGR01005 166 PKLAAAIPDAIAAAY 180 (754)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555555555
No 299
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=65.69 E-value=4.1e+02 Score=34.57 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001734 326 IAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEE 374 (1019)
Q Consensus 326 ~eek~~~~e~~~~~l~ke~~~~~~e~~~Lk~ele~~k~~~e~~~~~le~ 374 (1019)
+.+.+...+.++..|+...+..++|+++||=|+..+.+..+.+..+.+-
T Consensus 125 l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~ 173 (769)
T PF05911_consen 125 LSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREY 173 (769)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666777777777778888888887777777666655444433
No 300
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=65.62 E-value=2.1e+02 Score=31.15 Aligned_cols=86 Identities=21% Similarity=0.358 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHH
Q 001734 289 EKYKSRIRVLETLTVGTTEENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELH 368 (1019)
Q Consensus 289 ~~~~~~~~~le~l~~~~~ee~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~l~ke~~~~~~e~~~Lk~ele~~k~~~e~~ 368 (1019)
..|.+++..|+.--.....+...+..+|+.|+ .+.+-++.-+.||.+|+.++..++..|...
T Consensus 43 s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~------------------~~~~~k~~qe~eI~~Le~e~~~~~~e~~~~ 104 (206)
T PF14988_consen 43 SRYAKQTSELQDQLLQKEKEQAKLQQELQALK------------------EFRRLKEQQEREIQTLEEELEKMRAEHAEK 104 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666644444444444444444322 122223345678999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001734 369 CLQLEEQIYETKIESQKKLQELER 392 (1019)
Q Consensus 369 ~~~le~~~~~~k~~le~~l~e~~~ 392 (1019)
..+++.+.-.-+..|++++.+...
T Consensus 105 l~~~~~qfl~EK~~LEke~~e~~i 128 (206)
T PF14988_consen 105 LQEAESQFLQEKARLEKEASELKI 128 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhH
Confidence 899888888888888887755433
No 301
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=65.43 E-value=2e+02 Score=30.95 Aligned_cols=34 Identities=18% Similarity=0.376 Sum_probs=20.7
Q ss_pred HHHHHHHHHhHhhhhcCCCCchHHHHHHHHHHHHHHHHh
Q 001734 232 LFNIVNRILDECVERKNGDAPHRVACLLRKVVPLIERRT 270 (1019)
Q Consensus 232 l~~~~~~~l~~~~~~~~~~~~~~~~~~l~kvv~e~e~~i 270 (1019)
|..+|.+-+.+.+++-- =|. .+|.-.|.|.+.-|
T Consensus 6 l~~~~~a~~~~~ld~~E--DP~---~~l~q~ird~e~~l 39 (221)
T PF04012_consen 6 LKTLVKANINELLDKAE--DPE---KMLEQAIRDMEEQL 39 (221)
T ss_pred HHHHHHHHHHHHHHhhc--CHH---HHHHHHHHHHHHHH
Confidence 45677777777666432 264 56777776665543
No 302
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=65.09 E-value=2.2e+02 Score=31.36 Aligned_cols=170 Identities=15% Similarity=0.171 Sum_probs=0.0
Q ss_pred CCCcchHHHHHHHHHhHhhhhcCCCCchHHHHHHHHHHHHHHHH----------hhhhhHHHhhhhhHHHhhHHHHHHHH
Q 001734 226 NASTKSLFNIVNRILDECVERKNGDAPHRVACLLRKVVPLIERR----------TATQYQNFKNQNNLFRAREEKYKSRI 295 (1019)
Q Consensus 226 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~l~kvv~e~e~~----------is~q~~~~~~q~~~~~~~~~~~~~~~ 295 (1019)
..+...+..+|++-+.+.+++. |=|. -+|.-.|.+-+.- +-...-.+..+.+-...+.++|+++
T Consensus 1 M~i~~r~~~~~~a~~~~~~dk~--EDp~---~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~- 74 (225)
T COG1842 1 MGIFSRLKDLVKANINELLDKA--EDPE---KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEK- 74 (225)
T ss_pred CchHHHHHHHHHHHHHHHHHhh--cCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_pred HHHhhhhccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001734 296 RVLETLTVGTTEENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQ 375 (1019)
Q Consensus 296 ~~le~l~~~~~ee~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~l~ke~~~~~~e~~~Lk~ele~~k~~~e~~~~~le~~ 375 (1019)
+..+|..|.+.-...+..+.+.+.....-.+......++.+.+|.+........|..++.+++.++-.+.....+-...
T Consensus 75 -A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~ 153 (225)
T COG1842 75 -AELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVN 153 (225)
T ss_pred -HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001734 376 IYETKIESQKKLQELERLLTVSKKKVEELES 406 (1019)
Q Consensus 376 ~~~~k~~le~~l~e~~~~l~~~~~~~~~le~ 406 (1019)
..-..... .+....|+..++++.+.++
T Consensus 154 ~~~~~~s~----~sa~~~fer~e~kiee~ea 180 (225)
T COG1842 154 RSLGGGSS----SSAMAAFERMEEKIEEREA 180 (225)
T ss_pred HHhcCCCc----hhhHHHHHHHHHHHHHHHH
No 303
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=64.93 E-value=4.6e+02 Score=34.97 Aligned_cols=242 Identities=13% Similarity=0.159 Sum_probs=0.0
Q ss_pred HhHhhhhcCCCCchHHH----------------HHHHHHHHHHHHHhhhhhHHHhhhhhHHHhhHHHHH--HHHHHHhhh
Q 001734 240 LDECVERKNGDAPHRVA----------------CLLRKVVPLIERRTATQYQNFKNQNNLFRAREEKYK--SRIRVLETL 301 (1019)
Q Consensus 240 l~~~~~~~~~~~~~~~~----------------~~l~kvv~e~e~~is~q~~~~~~q~~~~~~~~~~~~--~~~~~le~l 301 (1019)
+.+-|.+.+.|||...+ .-+++-+..+++.|+-+-..+..+-.+++..++--+ .|+.-++--
T Consensus 232 ~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~erp~li~~ke~~~~~k~rl~~~~k~ 311 (1141)
T KOG0018|consen 232 ANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAERPELIKVKENASHLKKRLEEIEKD 311 (1141)
T ss_pred hhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcchhhccchhHHHHhhhh
Q ss_pred hccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001734 302 TVGTTEENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKI 381 (1019)
Q Consensus 302 ~~~~~ee~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~l~ke~~~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~ 381 (1019)
.-+..........+++++..+..-.+-+++.-++++..-...............++.+.++..+...- ..+......
T Consensus 312 i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~---~~el~~ln~ 388 (1141)
T KOG0018|consen 312 IETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYERLKEEACKEA---LEELEVLNR 388 (1141)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhh---HHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHhh
Q 001734 382 ESQKKLQELERLLTVSKKKVEELESLSESKSQRWKRIEHSYQSFMGCQLGVIQDLRVAFESTKHEVLETKKNYSKEFDCL 461 (1019)
Q Consensus 382 ~le~~l~e~~~~l~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~l~~Q~~~l~el~~~~~~~k~ei~~~~~~~~~e~~~l 461 (1019)
+...+...++..+.....--+.......+- .........+...+..=.+...++......+...+......-.+-...|
T Consensus 389 ~~r~~~~~ld~~~~~~~elE~r~k~l~~sv-er~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL 467 (1141)
T KOG0018|consen 389 NMRSDQDTLDHELERRAELEARIKQLKESV-ERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEEL 467 (1141)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHH
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhh
Q 001734 462 GLNLKRLIDAAEKYHVILAENRRL 485 (1019)
Q Consensus 462 ~~~l~~l~~~~~~~~~~l~erR~L 485 (1019)
..-+..+.++....|.-....|+.
T Consensus 468 ~~~~~ql~das~dr~e~sR~~~~~ 491 (1141)
T KOG0018|consen 468 VEVLDQLLDASADRHEGSRRSRKQ 491 (1141)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHH
No 304
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=64.78 E-value=2.2e+02 Score=31.24 Aligned_cols=10 Identities=20% Similarity=0.395 Sum_probs=5.0
Q ss_pred hhhhhhhhhc
Q 001734 483 RRLYNEVQDL 492 (1019)
Q Consensus 483 R~L~N~vqel 492 (1019)
+.|...+.+|
T Consensus 225 ~eld~~l~el 234 (237)
T PF00261_consen 225 EELDQTLNEL 234 (237)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHh
Confidence 4455555554
No 305
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=64.62 E-value=2.2 Score=45.49 Aligned_cols=18 Identities=44% Similarity=0.543 Sum_probs=15.5
Q ss_pred eEEeecccCCCCceeeec
Q 001734 574 CIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 574 ~IfAYGQTGSGKTyTM~G 591 (1019)
.|+-.|+||+|||.|+.-
T Consensus 3 vi~lvGptGvGKTTt~aK 20 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAK 20 (196)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCchHhHHHH
Confidence 578899999999999753
No 306
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=64.56 E-value=2.7e+02 Score=32.14 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001734 381 IESQKKLQELERLLTVSKKKVEELE 405 (1019)
Q Consensus 381 ~~le~~l~e~~~~l~~~~~~~~~le 405 (1019)
..|.+|++.++.+...++.+...|.
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~L~ 187 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQLK 187 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567788888888887777776664
No 307
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=64.50 E-value=2.2e+02 Score=31.01 Aligned_cols=19 Identities=26% Similarity=0.469 Sum_probs=10.2
Q ss_pred cchhHHHHHHHHHHHHHHH
Q 001734 345 DDRDIEISTLKQDLELAKR 363 (1019)
Q Consensus 345 ~~~~~e~~~Lk~ele~~k~ 363 (1019)
.....||-+||.+|..++.
T Consensus 27 ~~K~~Eiv~Lr~ql~e~~~ 45 (202)
T PF06818_consen 27 NQKDSEIVSLRAQLRELRA 45 (202)
T ss_pred HHHHhHHHHHHHHHHHHHH
Confidence 3445556666665555543
No 308
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=64.35 E-value=4e+02 Score=34.08 Aligned_cols=30 Identities=10% Similarity=0.094 Sum_probs=13.9
Q ss_pred HhhHHHhhHHHHHHHHHHHHHhHHHHHHHH
Q 001734 422 YQSFMGCQLGVIQDLRVAFESTKHEVLETK 451 (1019)
Q Consensus 422 ~~~~l~~Q~~~l~el~~~~~~~k~ei~~~~ 451 (1019)
+...++.+.+..+++...++.++.++.+..
T Consensus 550 ~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~ 579 (698)
T KOG0978|consen 550 LTQSLEMLKKKAQEAKQSLEDLQIELEKSE 579 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444555555554444444433
No 309
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=64.24 E-value=2.5 Score=40.33 Aligned_cols=16 Identities=38% Similarity=0.522 Sum_probs=14.1
Q ss_pred eEEeecccCCCCceee
Q 001734 574 CIFAYGQTGSGKTYTM 589 (1019)
Q Consensus 574 ~IfAYGQTGSGKTyTM 589 (1019)
+|+-.|++|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 5889999999999864
No 310
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=64.02 E-value=69 Score=36.86 Aligned_cols=53 Identities=21% Similarity=0.347 Sum_probs=30.3
Q ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHH
Q 001734 307 EENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLE 359 (1019)
Q Consensus 307 ee~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~l~ke~~~~~~e~~~Lk~ele 359 (1019)
++...+..+++.++.|...+.++.+..|++...+.++....+.|...|+++-+
T Consensus 43 ~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~ 95 (314)
T PF04111_consen 43 EDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEE 95 (314)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666565555555555666666666666666666666655433
No 311
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=63.96 E-value=1.6e+02 Score=29.79 Aligned_cols=20 Identities=30% Similarity=0.297 Sum_probs=9.0
Q ss_pred hhhcccchhHHHHHHHHHHH
Q 001734 340 LKKENDDRDIEISTLKQDLE 359 (1019)
Q Consensus 340 l~ke~~~~~~e~~~Lk~ele 359 (1019)
|.+|.+..+.|-.+|++=|.
T Consensus 39 L~~ELDsL~~EkvhLeeiln 58 (134)
T PF15233_consen 39 LQRELDSLNGEKVHLEEILN 58 (134)
T ss_pred HHHHHHHHhhhHHHHHHHHH
Confidence 34444444444444444444
No 312
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=63.91 E-value=2.5 Score=44.30 Aligned_cols=30 Identities=33% Similarity=0.453 Sum_probs=21.1
Q ss_pred HHHHHHHHcCcceeEEeecccCCCCceeee
Q 001734 561 RPLIRSVLDGYNVCIFAYGQTGSGKTYTMS 590 (1019)
Q Consensus 561 ~pLV~svLdG~N~~IfAYGQTGSGKTyTM~ 590 (1019)
..+...+-.|.+.+++-||+.|+|||+.|.
T Consensus 9 ~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~ 38 (234)
T PF01637_consen 9 EKLKELLESGPSQHILLYGPRGSGKTSLLK 38 (234)
T ss_dssp HHHHHCHHH--SSEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHHhhcCcEEEEEcCCcCCHHHHHH
Confidence 334443445668899999999999999874
No 313
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=63.83 E-value=2.3 Score=51.35 Aligned_cols=59 Identities=27% Similarity=0.307 Sum_probs=0.0
Q ss_pred hcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001734 342 KENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLTVSKKKVEEL 404 (1019)
Q Consensus 342 ke~~~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le~~l~e~~~~l~~~~~~~~~l 404 (1019)
++.+.++.||..||+.|....++-|+....|..+ +.++.+.+.++...|++..++++..
T Consensus 369 ~~~e~YEqEI~~LkErL~~S~rkLeEyErrLl~Q----Eqqt~Kll~qyq~RLedSE~RLr~Q 427 (495)
T PF12004_consen 369 KEVEKYEQEIQSLKERLRMSHRKLEEYERRLLSQ----EQQTQKLLLQYQARLEDSEERLRRQ 427 (495)
T ss_dssp ---------------------------------------------------------------
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 3444588899999999999887766555554433 2344555666767776666655543
No 314
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=63.79 E-value=2.5e+02 Score=31.46 Aligned_cols=66 Identities=20% Similarity=0.228 Sum_probs=32.9
Q ss_pred HHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001734 338 LRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLTVSKKKVEELESL 407 (1019)
Q Consensus 338 ~~l~ke~~~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le~~l~e~~~~l~~~~~~~~~le~~ 407 (1019)
..+...+-+...++..|+.|++..|.+.+.+..+.= .....|+..+.-.....+.+++-|++||+.
T Consensus 55 ~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y----~q~s~Leddlsqt~aikeql~kyiReLEQa 120 (333)
T KOG1853|consen 55 DQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFY----QQESQLEDDLSQTHAIKEQLRKYIRELEQA 120 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333444455555666666666665554443321 123334444444555555555666666543
No 315
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=63.78 E-value=3.2e+02 Score=32.79 Aligned_cols=24 Identities=25% Similarity=0.122 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001734 380 KIESQKKLQELERLLTVSKKKVEE 403 (1019)
Q Consensus 380 k~~le~~l~e~~~~l~~~~~~~~~ 403 (1019)
+..++-+++-++.+...+|.-+..
T Consensus 299 ~Enlqmr~qqleeentelRs~~ar 322 (502)
T KOG0982|consen 299 KENLQMRDQQLEEENTELRSLIAR 322 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443333
No 316
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=63.71 E-value=87 Score=31.36 Aligned_cols=70 Identities=26% Similarity=0.346 Sum_probs=38.0
Q ss_pred HHHHhhhcccchhHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001734 336 NALRLKKENDDRDIEISTLKQDLELAKRTHEL----------------------HCLQLEEQIYETKIESQKKLQELERL 393 (1019)
Q Consensus 336 ~~~~l~ke~~~~~~e~~~Lk~ele~~k~~~e~----------------------~~~~le~~~~~~k~~le~~l~e~~~~ 393 (1019)
.+.++...+.+...+|...|++++.+...-.+ ....++.+.++.+..+++.+..++..
T Consensus 24 ~Fsrl~~R~~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i~~les~ 103 (131)
T KOG1760|consen 24 EFSRLNSRKDDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEIEELESE 103 (131)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666666666655433221 12333444555566666666666666
Q ss_pred HHHHHHHHHHHH
Q 001734 394 LTVSKKKVEELE 405 (1019)
Q Consensus 394 l~~~~~~~~~le 405 (1019)
++....++.+|.
T Consensus 104 ~e~I~~~m~~LK 115 (131)
T KOG1760|consen 104 LESISARMDELK 115 (131)
T ss_pred HHHHHHHHHHHH
Confidence 655555554444
No 317
>PF13479 AAA_24: AAA domain
Probab=63.68 E-value=3 Score=44.71 Aligned_cols=20 Identities=40% Similarity=0.627 Sum_probs=16.8
Q ss_pred ceeEEeecccCCCCceeeec
Q 001734 572 NVCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 572 N~~IfAYGQTGSGKTyTM~G 591 (1019)
+..|+.||++|+|||++...
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~ 22 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAAS 22 (213)
T ss_pred ceEEEEECCCCCCHHHHHHh
Confidence 45788899999999998754
No 318
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=63.62 E-value=2.4e+02 Score=31.23 Aligned_cols=10 Identities=30% Similarity=0.627 Sum_probs=4.5
Q ss_pred hhhhhhhhhh
Q 001734 482 NRRLYNEVQD 491 (1019)
Q Consensus 482 rR~L~N~vqe 491 (1019)
|+.+..++..
T Consensus 146 r~~l~~~l~~ 155 (302)
T PF10186_consen 146 RRQLIQELSE 155 (302)
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 319
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=63.53 E-value=3.7 Score=47.16 Aligned_cols=29 Identities=34% Similarity=0.450 Sum_probs=20.5
Q ss_pred HHHHHHHHcCcceeEEeecccCCCCceeee
Q 001734 561 RPLIRSVLDGYNVCIFAYGQTGSGKTYTMS 590 (1019)
Q Consensus 561 ~pLV~svLdG~N~~IfAYGQTGSGKTyTM~ 590 (1019)
..++..++.+ ...|+..|.||||||++|.
T Consensus 138 ~~~L~~~v~~-~~~ilI~G~tGSGKTTll~ 166 (319)
T PRK13894 138 REAIIAAVRA-HRNILVIGGTGSGKTTLVN 166 (319)
T ss_pred HHHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 3456666665 3556667999999997764
No 320
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=63.04 E-value=2.9 Score=46.33 Aligned_cols=130 Identities=18% Similarity=0.290 Sum_probs=70.0
Q ss_pred eeeceeeCCCCChHHHHhchHHHHHHHHcCccee-EEeecccCCCCceeeecCCCCCCCccchhHHHHHHHHHHHhhccC
Q 001734 541 FKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVC-IFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFEISESRKN 619 (1019)
Q Consensus 541 F~FD~VF~~~atQeeVf~~~~pLV~svLdG~N~~-IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~~~~~~~~ 619 (1019)
..+|...+-+...+.+...+ ..++.|..+- ++-||..|+|||.++-. ++......
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt----~~Fl~G~pannvLL~G~rGtGKSSlVka------------------ll~~y~~~-- 79 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENT----EQFLQGLPANNVLLWGARGTGKSSLVKA------------------LLNEYADQ-- 79 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHH----HHHHcCCCCcceEEecCCCCCHHHHHHH------------------HHHHHhhc--
Confidence 45666666666555555554 4566666432 56699999999887643 11111111
Q ss_pred CceEEEEEEEEEEecceeeeccCCCCCCcccccccccCCCceecCCcEEEEe-cCHHHHHHHHHhhhhccccccCCCcCC
Q 001734 620 SILYEVGVQMVEIYNEQVRDLLSSDGPQRRLGIWNATLPNGLAVPEASMYSV-QSTADVLELMNIGLMNRAVCSTALNER 698 (1019)
Q Consensus 620 ~~~~~V~vS~lEIYnE~V~DLL~~~~~~~~l~i~~~~~~g~~vv~~~~~~vv-~s~edv~~ll~~g~~nR~~~sT~~N~~ 698 (1019)
.+-.+||..+.+.||-.--. .+...+..-.++++.++...- .....+..+|+-|...| .....+...
T Consensus 80 ------GLRlIev~k~~L~~l~~l~~-----~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~-P~NvliyAT 147 (249)
T PF05673_consen 80 ------GLRLIEVSKEDLGDLPELLD-----LLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEAR-PDNVLIYAT 147 (249)
T ss_pred ------CceEEEECHHHhccHHHHHH-----HHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccC-CCcEEEEEe
Confidence 16678888888777632100 000011111223333332221 12355666666665444 445556777
Q ss_pred CCCCcceE
Q 001734 699 SSRSHSIL 706 (1019)
Q Consensus 699 SSRSH~If 706 (1019)
|.|-|.|=
T Consensus 148 SNRRHLv~ 155 (249)
T PF05673_consen 148 SNRRHLVP 155 (249)
T ss_pred cchhhccc
Confidence 88888774
No 321
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=62.76 E-value=3.6 Score=46.70 Aligned_cols=29 Identities=34% Similarity=0.460 Sum_probs=21.7
Q ss_pred HHHHHHHHcCcceeEEeecccCCCCceeee
Q 001734 561 RPLIRSVLDGYNVCIFAYGQTGSGKTYTMS 590 (1019)
Q Consensus 561 ~pLV~svLdG~N~~IfAYGQTGSGKTyTM~ 590 (1019)
..++..++.+ ...|+-.|.||||||++|-
T Consensus 122 ~~~L~~~v~~-~~~ilI~G~tGSGKTTll~ 150 (299)
T TIGR02782 122 RDVLREAVLA-RKNILVVGGTGSGKTTLAN 150 (299)
T ss_pred HHHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 4556666654 4567889999999999874
No 322
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=62.68 E-value=9.4 Score=48.06 Aligned_cols=92 Identities=23% Similarity=0.265 Sum_probs=53.9
Q ss_pred eeeceeeCCCCChHHHHhchHHHHHHHHcCcceeEEeecccCCCCceeeecCCCCCCCccchh----HHHHHHHHHHHhh
Q 001734 541 FKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVN----YRALNDLFEISES 616 (1019)
Q Consensus 541 F~FD~VF~~~atQeeVf~~~~pLV~svLdG~N~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIi----pRal~~LF~~~~~ 616 (1019)
|....=|.|.-.|..-|. .+++.+-+|...- ..+|.|||||||||-.-... ...+-|+ -....+|+.....
T Consensus 2 f~~~~~~~~~~~Q~~ai~---~l~~~~~~~~~~~-~l~Gvtgs~kt~~~a~~~~~-~~~p~Lvi~~n~~~A~ql~~el~~ 76 (655)
T TIGR00631 2 FKLHSPFQPAGDQPKAIA---KLVEGLTDGEKHQ-TLLGVTGSGKTFTMANVIAQ-VNRPTLVIAHNKTLAAQLYNEFKE 76 (655)
T ss_pred ceeccCCCCChHHHHHHH---HHHHhhhcCCCcE-EEECCCCcHHHHHHHHHHHH-hCCCEEEEECCHHHHHHHHHHHHH
Confidence 444445778888877664 3555555664222 37899999999999752110 0111111 1234455554444
Q ss_pred ccCCceEEEEEEEEEEeccee
Q 001734 617 RKNSILYEVGVQMVEIYNEQV 637 (1019)
Q Consensus 617 ~~~~~~~~V~vS~lEIYnE~V 637 (1019)
--........|||+--|.-..
T Consensus 77 f~p~~~V~~f~sy~d~y~pe~ 97 (655)
T TIGR00631 77 FFPENAVEYFVSYYDYYQPEA 97 (655)
T ss_pred hCCCCeEEEEeeecccCCccc
Confidence 333444677899999997654
No 323
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.63 E-value=3.5e+02 Score=32.75 Aligned_cols=15 Identities=13% Similarity=0.244 Sum_probs=10.1
Q ss_pred HHHHHhCCCCC---cccc
Q 001734 96 LAAMDDMGLPR---FELS 110 (1019)
Q Consensus 96 L~ac~~~Glp~---F~~~ 110 (1019)
-.+|..+|.+. +++.
T Consensus 71 Aq~ckdlgyrgD~gyqtf 88 (521)
T KOG1937|consen 71 AQYCKDLGYRGDTGYQTF 88 (521)
T ss_pred HHHHHHcCCCcccchhhe
Confidence 34678888887 5554
No 324
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=62.59 E-value=2.1 Score=43.54 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=13.0
Q ss_pred HcCcceeEEeecccCCCCceee
Q 001734 568 LDGYNVCIFAYGQTGSGKTYTM 589 (1019)
Q Consensus 568 LdG~N~~IfAYGQTGSGKTyTM 589 (1019)
..|-..+|+-+|.+|+|||+.+
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHH
Confidence 3566778999999999999875
No 325
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=62.19 E-value=4.1 Score=42.72 Aligned_cols=19 Identities=32% Similarity=0.508 Sum_probs=16.0
Q ss_pred eeEEeecccCCCCceeeec
Q 001734 573 VCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 573 ~~IfAYGQTGSGKTyTM~G 591 (1019)
-.|+-||++|+||||...+
T Consensus 48 ~~l~l~G~~G~GKThLa~a 66 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVA 66 (178)
T ss_dssp -EEEEEESTTSSHHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHH
Confidence 3488899999999999875
No 326
>PRK00106 hypothetical protein; Provisional
Probab=62.08 E-value=4e+02 Score=33.20 Aligned_cols=6 Identities=33% Similarity=0.379 Sum_probs=2.5
Q ss_pred HHHHhc
Q 001734 554 EEVFLD 559 (1019)
Q Consensus 554 eeVf~~ 559 (1019)
++||..
T Consensus 300 Ee~v~k 305 (535)
T PRK00106 300 EELVEK 305 (535)
T ss_pred HHHHHH
Confidence 444443
No 327
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=61.63 E-value=3e+02 Score=31.76 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=9.8
Q ss_pred HHHHhhhHHHHHHHHHHHH-HHhhhc
Q 001734 319 IKTEKTNIAQKEKLEEQNA-LRLKKE 343 (1019)
Q Consensus 319 l~~e~~k~eek~~~~e~~~-~~l~ke 343 (1019)
|+..--.+..+..-+|+.+ ..|+|.
T Consensus 60 lr~~sv~~~~~aEqEEE~isN~LlKk 85 (310)
T PF09755_consen 60 LREASVRIQAKAEQEEEFISNTLLKK 85 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444333332 344444
No 328
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=61.53 E-value=3.5e+02 Score=32.47 Aligned_cols=18 Identities=11% Similarity=-0.082 Sum_probs=8.8
Q ss_pred hHHHHHHHHHhHhhhhcC
Q 001734 231 SLFNIVNRILDECVERKN 248 (1019)
Q Consensus 231 ~l~~~~~~~l~~~~~~~~ 248 (1019)
+++..|-++.-.+...|+
T Consensus 222 lili~v~gcw~ay~Qnk~ 239 (575)
T KOG4403|consen 222 LILIGVGGCWFAYRQNKK 239 (575)
T ss_pred HHHHHhhhhhhhhhhhhH
Confidence 344455555555554443
No 329
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=60.92 E-value=5.4 Score=44.67 Aligned_cols=30 Identities=27% Similarity=0.380 Sum_probs=24.9
Q ss_pred HHHHHHHHcCcceeEEeecccCCCCceeee
Q 001734 561 RPLIRSVLDGYNVCIFAYGQTGSGKTYTMS 590 (1019)
Q Consensus 561 ~pLV~svLdG~N~~IfAYGQTGSGKTyTM~ 590 (1019)
-++++.+.--.-+.|+..|.|||||+.||-
T Consensus 116 Pevlk~la~~kRGLviiVGaTGSGKSTtmA 145 (375)
T COG5008 116 PEVLKDLALAKRGLVIIVGATGSGKSTTMA 145 (375)
T ss_pred cHHHHHhhcccCceEEEECCCCCCchhhHH
Confidence 467777776777789999999999999984
No 330
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=60.90 E-value=4.7e+02 Score=33.70 Aligned_cols=71 Identities=14% Similarity=0.162 Sum_probs=39.7
Q ss_pred hcccCcCCCCcchHHHHHHHHHhHhhhhc--CCCCch-HHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHhhHH
Q 001734 219 VNSSCMDNASTKSLFNIVNRILDECVERK--NGDAPH-RVACLLRKVVPLIERRTATQYQNFKNQNNLFRAREE 289 (1019)
Q Consensus 219 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~--~~~~~~-~~~~~l~kvv~e~e~~is~q~~~~~~q~~~~~~~~~ 289 (1019)
||-....-.|+--|-.=|-.+=.+..+-| ..+.|+ ....++.|..+||++++|.-.....-|..|-.-|+|
T Consensus 421 ~~~~~~~~~~~~~Le~elekLk~eilKAk~s~~~~~~~~L~e~IeKLk~E~d~e~S~A~~~~gLk~kL~~Lr~E 494 (762)
T PLN03229 421 MKKREAVKTPVRELEGEVEKLKEQILKAKESSSKPSELALNEMIEKLKKEIDLEYTEAVIAMGLQERLENLREE 494 (762)
T ss_pred cchhccCCCCCccHHHHHHHHHHHHHhcccccCCCCChHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 44444444555555443333333333333 235555 456788889999999999765554444444444433
No 331
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=60.45 E-value=3.5e+02 Score=32.54 Aligned_cols=17 Identities=18% Similarity=-0.021 Sum_probs=10.6
Q ss_pred HHHHHHcCcceeEEeec
Q 001734 563 LIRSVLDGYNVCIFAYG 579 (1019)
Q Consensus 563 LV~svLdG~N~~IfAYG 579 (1019)
-|..+-.|-.+.|...+
T Consensus 368 di~~v~~Gq~V~v~~~a 384 (457)
T TIGR01000 368 DISGIKVGQKVRFKLTQ 384 (457)
T ss_pred HHhhcCCCCeEEEEEec
Confidence 34555677777776554
No 332
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=60.27 E-value=2.4e+02 Score=36.91 Aligned_cols=38 Identities=29% Similarity=0.287 Sum_probs=24.1
Q ss_pred hHHHHhchHHHHHHHHcCc------ceeEEeecccCCCCceeee
Q 001734 553 QEEVFLDTRPLIRSVLDGY------NVCIFAYGQTGSGKTYTMS 590 (1019)
Q Consensus 553 QeeVf~~~~pLV~svLdG~------N~~IfAYGQTGSGKTyTM~ 590 (1019)
|...-..+...|..+..|. .+.++-+|+||+|||++.-
T Consensus 570 Q~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~ 613 (852)
T TIGR03346 570 QDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAK 613 (852)
T ss_pred ChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHH
Confidence 3334444444455555553 3567789999999998753
No 333
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=59.78 E-value=3.3e+02 Score=31.62 Aligned_cols=68 Identities=18% Similarity=0.205 Sum_probs=31.2
Q ss_pred hhccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccc-----hhHHHHHHHHHHHHHHHHHHHH
Q 001734 301 LTVGTTEENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDD-----RDIEISTLKQDLELAKRTHELH 368 (1019)
Q Consensus 301 l~~~~~ee~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~l~ke~~~-----~~~e~~~Lk~ele~~k~~~e~~ 368 (1019)
+...+++++..+..+++.|++....++..-++..+.+.+..-.... .-.|-+.|..+||.++.+++..
T Consensus 73 lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qL 145 (319)
T PF09789_consen 73 LLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQL 145 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555544444444444444444333222221 1134445555555555544443
No 334
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=59.47 E-value=3.2e+02 Score=32.92 Aligned_cols=19 Identities=26% Similarity=0.592 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001734 350 EISTLKQDLELAKRTHELH 368 (1019)
Q Consensus 350 e~~~Lk~ele~~k~~~e~~ 368 (1019)
|+..|+.+|..+|+.|-..
T Consensus 156 el~~lrrdLavlRQ~~~~~ 174 (426)
T smart00806 156 ELKSLQRELAVLRQTHNSF 174 (426)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444433
No 335
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=59.44 E-value=3.3 Score=39.51 Aligned_cols=16 Identities=38% Similarity=0.530 Sum_probs=13.7
Q ss_pred EEeecccCCCCceeee
Q 001734 575 IFAYGQTGSGKTYTMS 590 (1019)
Q Consensus 575 IfAYGQTGSGKTyTM~ 590 (1019)
|+-||+.|+|||+...
T Consensus 1 ill~G~~G~GKT~l~~ 16 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLAR 16 (132)
T ss_dssp EEEESSTTSSHHHHHH
T ss_pred CEEECcCCCCeeHHHH
Confidence 5789999999998763
No 336
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=59.39 E-value=5.6e+02 Score=34.07 Aligned_cols=6 Identities=17% Similarity=0.396 Sum_probs=3.8
Q ss_pred hcCCCc
Q 001734 74 LSPDSV 79 (1019)
Q Consensus 74 l~Pgsv 79 (1019)
+.||+|
T Consensus 17 f~~GsI 22 (1072)
T KOG0979|consen 17 FPDGSI 22 (1072)
T ss_pred CCCCce
Confidence 456766
No 337
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=59.30 E-value=1.7e+02 Score=34.96 Aligned_cols=22 Identities=9% Similarity=0.367 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001734 384 QKKLQELERLLTVSKKKVEELE 405 (1019)
Q Consensus 384 e~~l~e~~~~l~~~~~~~~~le 405 (1019)
.++.+|+.+.++...++|..||
T Consensus 297 ~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 297 YERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHhHHHHHHHHHHHHHHHHH
Confidence 3455566666666666655555
No 338
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=58.98 E-value=63 Score=36.28 Aligned_cols=81 Identities=22% Similarity=0.374 Sum_probs=48.7
Q ss_pred eeeceeeCCCCChHHHHhch-HHHHHHHH---cCcc--eeEEeecccCCCCceeeecCCCCC-------------CCccc
Q 001734 541 FKFNKVFGPEASQEEVFLDT-RPLIRSVL---DGYN--VCIFAYGQTGSGKTYTMSGPCISS-------------TEDWG 601 (1019)
Q Consensus 541 F~FD~VF~~~atQeeVf~~~-~pLV~svL---dG~N--~~IfAYGQTGSGKTyTM~G~~~~~-------------~~~~G 601 (1019)
.+|.-|=+-+..-++|-+.+ -||.+.=| =|++ -.|+.||+.|+|||...-.-...+ ..-.|
T Consensus 152 vsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylg 231 (408)
T KOG0727|consen 152 VSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLG 231 (408)
T ss_pred ccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhc
Confidence 44555555555556666655 46665543 2443 348999999999974332110000 11246
Q ss_pred hhHHHHHHHHHHHhhccCCc
Q 001734 602 VNYRALNDLFEISESRKNSI 621 (1019)
Q Consensus 602 IipRal~~LF~~~~~~~~~~ 621 (1019)
=-||.++++|....+....+
T Consensus 232 egprmvrdvfrlakenapsi 251 (408)
T KOG0727|consen 232 EGPRMVRDVFRLAKENAPSI 251 (408)
T ss_pred cCcHHHHHHHHHHhccCCcE
Confidence 77999999999887665543
No 339
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=58.90 E-value=2.4e+02 Score=29.65 Aligned_cols=16 Identities=44% Similarity=0.611 Sum_probs=9.6
Q ss_pred HHHHHHHHHHhHHHHH
Q 001734 433 IQDLRVAFESTKHEVL 448 (1019)
Q Consensus 433 l~el~~~~~~~k~ei~ 448 (1019)
+..|+..+++.|-++.
T Consensus 140 i~~lr~~iE~~K~~~l 155 (177)
T PF07798_consen 140 IANLRTEIESLKWDTL 155 (177)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4456666666666654
No 340
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=58.68 E-value=7.7 Score=49.67 Aligned_cols=48 Identities=19% Similarity=0.297 Sum_probs=31.3
Q ss_pred hhhhhhh------ccCCccccceeEecCCCCCCHHHHHHHHHHHhHhccccccccccCCC
Q 001734 780 LTQVLQS------SLGGQAKTLMMVQLNPDVDSYSETISTLKFAERVSGVELGAARSNKE 833 (1019)
Q Consensus 780 LTrLLqd------SLGGnskT~mI~~ISP~~~~~~ETlsTL~FA~Rak~I~~~~~k~~~~ 833 (1019)
.+++||- -+|+.+|..+|+. +.++.+.++-.+.+++.-++......+.
T Consensus 335 V~r~lQRiGRsgHr~~~~Skg~ii~~------~r~dllE~~vi~~~a~~g~le~~~i~~~ 388 (814)
T COG1201 335 VNRFLQRIGRAGHRLGEVSKGIIIAE------DRDDLLECLVLADLALEGKLERIKIPKN 388 (814)
T ss_pred HHHHhHhccccccccCCcccEEEEec------CHHHHHHHHHHHHHHHhCCcccCCCCCc
Confidence 3667764 3677788777753 3578888888888887776654443333
No 341
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=58.61 E-value=4.5 Score=46.52 Aligned_cols=28 Identities=43% Similarity=0.559 Sum_probs=20.0
Q ss_pred HHHHHHHcCcceeEEeecccCCCCceeee
Q 001734 562 PLIRSVLDGYNVCIFAYGQTGSGKTYTMS 590 (1019)
Q Consensus 562 pLV~svLdG~N~~IfAYGQTGSGKTyTM~ 590 (1019)
.++..++.+- ..|+-.|.||||||++|-
T Consensus 135 ~~L~~~v~~~-~nilI~G~tGSGKTTll~ 162 (323)
T PRK13833 135 SVIRSAIDSR-LNIVISGGTGSGKTTLAN 162 (323)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHHH
Confidence 4555555432 347889999999999984
No 342
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=58.60 E-value=5.7 Score=39.72 Aligned_cols=28 Identities=32% Similarity=0.358 Sum_probs=19.3
Q ss_pred HHHHHHcCcceeEEeecccCCCCceeeec
Q 001734 563 LIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 563 LV~svLdG~N~~IfAYGQTGSGKTyTM~G 591 (1019)
++..++++. ..++..|+||||||.++..
T Consensus 16 ~~~~~~~~~-~~~~i~~~~GsGKT~~~~~ 43 (201)
T smart00487 16 AIEALLSGL-RDVILAAPTGSGKTLAALL 43 (201)
T ss_pred HHHHHHcCC-CcEEEECCCCCchhHHHHH
Confidence 344455552 3446788999999998866
No 343
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=58.19 E-value=6.6 Score=42.38 Aligned_cols=27 Identities=26% Similarity=0.469 Sum_probs=17.7
Q ss_pred HHHHHHcCcceeEEeecccCCCCceeeec
Q 001734 563 LIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 563 LV~svLdG~N~~IfAYGQTGSGKTyTM~G 591 (1019)
+++.++ .+-.+++.|+.||||||.-..
T Consensus 12 ~~~al~--~~~~v~~~G~AGTGKT~LA~a 38 (205)
T PF02562_consen 12 ALDALL--NNDLVIVNGPAGTGKTFLALA 38 (205)
T ss_dssp HHHHHH--H-SEEEEE--TTSSTTHHHHH
T ss_pred HHHHHH--hCCeEEEECCCCCcHHHHHHH
Confidence 344444 566899999999999987643
No 344
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.30 E-value=3.9e+02 Score=33.11 Aligned_cols=29 Identities=21% Similarity=0.406 Sum_probs=16.4
Q ss_pred HHHHhhHHHHHhhhhhHHHHHHHHHHHHH
Q 001734 449 ETKKNYSKEFDCLGLNLKRLIDAAEKYHV 477 (1019)
Q Consensus 449 ~~~~~~~~e~~~l~~~l~~l~~~~~~~~~ 477 (1019)
.....|..|+..++..++.|....|-..+
T Consensus 655 ~AErdFk~Elq~~~~~~~~L~~~iET~~~ 683 (741)
T KOG4460|consen 655 DAERDFKKELQLIPDQLRHLGNAIETVTM 683 (741)
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33445666666666666666555554443
No 345
>PRK11281 hypothetical protein; Provisional
Probab=57.26 E-value=6.5e+02 Score=34.19 Aligned_cols=191 Identities=17% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhccchhhHHHHHHHHHH-HHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHH---
Q 001734 288 EEKYKSRIRVLETLTVGTTEENQVVANQLER-IKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKR--- 363 (1019)
Q Consensus 288 ~~~~~~~~~~le~l~~~~~ee~~~~~~~l~~-l~~e~~k~eek~~~~e~~~~~l~ke~~~~~~e~~~Lk~ele~~k~--- 363 (1019)
++..++++..+.. ....+.+...+...+++ +. +-++.+...++...|.+..++...++.+..++|+.+++
T Consensus 38 ~~~iq~~l~~~~~-~~~~~~~~k~~~~~l~~tL~-----~L~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~ 111 (1113)
T PRK11281 38 EADVQAQLDALNK-QKLLEAEDKLVQQDLEQTLA-----LLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDND 111 (1113)
T ss_pred HHHHHHHHHHhhc-CCCCchhhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcccc
Q ss_pred ------HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhH------------
Q 001734 364 ------THELHCLQLEEQIYETKI---ESQKKLQELERLLTVSKKKVEELESLSESKSQRWKRIEHSY------------ 422 (1019)
Q Consensus 364 ------~~e~~~~~le~~~~~~k~---~le~~l~e~~~~l~~~~~~~~~le~~~~~~~~~~~~~~~~~------------ 422 (1019)
--..-..++|....+... +.+..+.++...+.....+.+..++.-....+..+....++
T Consensus 112 ~~~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~ 191 (1113)
T PRK11281 112 EETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRP 191 (1113)
T ss_pred ccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCH
Q ss_pred --hhHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh
Q 001734 423 --QSFMGCQLGVIQDLRVAFESTKHEVLETKKNYSKEFDCLGLNLKRLIDAAEKYHVILAENRR 484 (1019)
Q Consensus 423 --~~~l~~Q~~~l~el~~~~~~~k~ei~~~~~~~~~e~~~l~~~l~~l~~~~~~~~~~l~erR~ 484 (1019)
+..++.+...++.-.....+.-......+..++.+.+.+..++..+....+..+..+.++|.
T Consensus 192 ~~~~~l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~kr~ 255 (1113)
T PRK11281 192 SQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKRL 255 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 346
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=57.21 E-value=7.2 Score=46.02 Aligned_cols=20 Identities=35% Similarity=0.474 Sum_probs=17.1
Q ss_pred ceeEEeecccCCCCceeeec
Q 001734 572 NVCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 572 N~~IfAYGQTGSGKTyTM~G 591 (1019)
...|+.+|+||+|||+|+.-
T Consensus 174 ~~vi~lvGptGvGKTTT~aK 193 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAK 193 (388)
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45788999999999999853
No 347
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=57.18 E-value=5.2 Score=46.26 Aligned_cols=28 Identities=32% Similarity=0.407 Sum_probs=22.7
Q ss_pred HHHHHHHHcCcceeEEeecccCCCCceee
Q 001734 561 RPLIRSVLDGYNVCIFAYGQTGSGKTYTM 589 (1019)
Q Consensus 561 ~pLV~svLdG~N~~IfAYGQTGSGKTyTM 589 (1019)
..++..++.+. +.|+-.|-||||||+++
T Consensus 163 a~~L~~av~~r-~NILisGGTGSGKTTlL 190 (355)
T COG4962 163 AKFLRRAVGIR-CNILISGGTGSGKTTLL 190 (355)
T ss_pred HHHHHHHHhhc-eeEEEeCCCCCCHHHHH
Confidence 45666677766 77889999999999886
No 348
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=57.01 E-value=2.9e+02 Score=29.98 Aligned_cols=120 Identities=21% Similarity=0.358 Sum_probs=0.0
Q ss_pred HHHHHHHHH---hhhhhHHHhhhhhHHHhhHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHH-------------HHhh
Q 001734 261 KVVPLIERR---TATQYQNFKNQNNLFRAREEKYKSRIRVLETLTVGTTEENQVVANQLERIK-------------TEKT 324 (1019)
Q Consensus 261 kvv~e~e~~---is~q~~~~~~q~~~~~~~~~~~~~~~~~le~l~~~~~ee~~~~~~~l~~l~-------------~e~~ 324 (1019)
.++.++.+. |+.-...+...+..+...+..|+++-..|+. .+.++|.+.+ .+.-
T Consensus 9 ~lld~l~~Nnr~L~~L~~dl~~~~~~~~~~e~~~~~KY~~lR~----------ElI~ELkqsKklydnYYkL~~KY~~LK 78 (196)
T PF15272_consen 9 ELLDQLDQNNRALSDLNQDLRERDERYELQETSYKEKYQQLRQ----------ELINELKQSKKLYDNYYKLYSKYQELK 78 (196)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHhhhcc----cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001734 325 NIAQKEKLEEQNALRLKKEN----DDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLL 394 (1019)
Q Consensus 325 k~eek~~~~e~~~~~l~ke~----~~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le~~l~e~~~~l 394 (1019)
+.-.+.......+..|.++. ...+.+|..+.++| -..+.++.+++.+.+.-+...|.+|.|++..|
T Consensus 79 ~~~~~~~~l~~~i~~le~~lvd~~~~kd~~i~~~~~~l----~~~~~r~~el~~~r~~e~~~YesRI~dLE~~L 148 (196)
T PF15272_consen 79 KSSKQSEDLQSRISNLEKQLVDQMIEKDREIRTLQDEL----LSLELRNKELQNERERERIAYESRIADLERQL 148 (196)
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
No 349
>PRK09183 transposase/IS protein; Provisional
Probab=56.94 E-value=5.3 Score=44.39 Aligned_cols=21 Identities=33% Similarity=0.389 Sum_probs=16.8
Q ss_pred cCcceeEEeecccCCCCceeeec
Q 001734 569 DGYNVCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 569 dG~N~~IfAYGQTGSGKTyTM~G 591 (1019)
.|.| |+-||++|+||||.+.+
T Consensus 101 ~~~~--v~l~Gp~GtGKThLa~a 121 (259)
T PRK09183 101 RNEN--IVLLGPSGVGKTHLAIA 121 (259)
T ss_pred cCCe--EEEEeCCCCCHHHHHHH
Confidence 5665 45699999999998865
No 350
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=56.83 E-value=77 Score=39.35 Aligned_cols=27 Identities=7% Similarity=-0.065 Sum_probs=18.5
Q ss_pred CchhhhhhhhccCCccccceeEecCCC
Q 001734 777 NSKLTQVLQSSLGGQAKTLMMVQLNPD 803 (1019)
Q Consensus 777 dSKLTrLLqdSLGGnskT~mI~~ISP~ 803 (1019)
++++|++|...|++=.+..+=+.++-.
T Consensus 472 ~~~~~~~i~~~l~~i~~~~v~~~~~G~ 498 (555)
T TIGR03545 472 SFEATKYILQVLKKIDVLTVDADIKGI 498 (555)
T ss_pred ccHHHHHHHHHHhhCCeeEEEEeeccc
Confidence 477888888888876665555555543
No 351
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=56.55 E-value=1.5e+02 Score=33.58 Aligned_cols=16 Identities=31% Similarity=0.522 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHhh
Q 001734 309 NQVVANQLERIKTEKT 324 (1019)
Q Consensus 309 ~~~~~~~l~~l~~e~~ 324 (1019)
++.++.+++.|+.|+.
T Consensus 20 IqelE~QldkLkKE~q 35 (307)
T PF10481_consen 20 IQELEQQLDKLKKERQ 35 (307)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555554444
No 352
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=55.88 E-value=5.7 Score=41.52 Aligned_cols=29 Identities=28% Similarity=0.389 Sum_probs=20.3
Q ss_pred HHHHHHHHcCcceeEEeecccCCCCceeee
Q 001734 561 RPLIRSVLDGYNVCIFAYGQTGSGKTYTMS 590 (1019)
Q Consensus 561 ~pLV~svLdG~N~~IfAYGQTGSGKTyTM~ 590 (1019)
.+++..++.. ...|.-.|+||||||.+|-
T Consensus 15 ~~~l~~~v~~-g~~i~I~G~tGSGKTTll~ 43 (186)
T cd01130 15 AAYLWLAVEA-RKNILISGGTGSGKTTLLN 43 (186)
T ss_pred HHHHHHHHhC-CCEEEEECCCCCCHHHHHH
Confidence 4556555543 3446678999999999874
No 353
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=55.79 E-value=5.2 Score=41.83 Aligned_cols=28 Identities=32% Similarity=0.478 Sum_probs=18.2
Q ss_pred HHHHHHcCcceeEEeecccCCCCceeeec
Q 001734 563 LIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 563 LV~svLdG~N~~IfAYGQTGSGKTyTM~G 591 (1019)
.|..++.--. ..+..|+.|||||+|+..
T Consensus 9 Ai~~~~~~~~-~~~i~GpPGTGKT~~l~~ 36 (236)
T PF13086_consen 9 AIQSALSSNG-ITLIQGPPGTGKTTTLAS 36 (236)
T ss_dssp HHHHHCTSSE--EEEE-STTSSHHHHHHH
T ss_pred HHHHHHcCCC-CEEEECCCCCChHHHHHH
Confidence 4555554333 456699999999998865
No 354
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=54.99 E-value=6.6 Score=43.96 Aligned_cols=40 Identities=25% Similarity=0.218 Sum_probs=24.8
Q ss_pred CChHHHHhchHHHHHHHHcC--cceeEEeecccCCCCceeee
Q 001734 551 ASQEEVFLDTRPLIRSVLDG--YNVCIFAYGQTGSGKTYTMS 590 (1019)
Q Consensus 551 atQeeVf~~~~pLV~svLdG--~N~~IfAYGQTGSGKTyTM~ 590 (1019)
..|+++......+++....+ ....++-||++|+|||+...
T Consensus 7 iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 7 IGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred cCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 34566655555555543322 22236779999999998764
No 355
>PTZ00424 helicase 45; Provisional
Probab=54.44 E-value=6.1 Score=45.86 Aligned_cols=27 Identities=41% Similarity=0.666 Sum_probs=21.4
Q ss_pred HHHHHHHcCcceeEEeecccCCCCceeee
Q 001734 562 PLIRSVLDGYNVCIFAYGQTGSGKTYTMS 590 (1019)
Q Consensus 562 pLV~svLdG~N~~IfAYGQTGSGKTyTM~ 590 (1019)
..+..+++|.|+. ..++||||||.+..
T Consensus 57 ~ai~~i~~~~d~i--i~apTGsGKT~~~~ 83 (401)
T PTZ00424 57 RGIKPILDGYDTI--GQAQSGTGKTATFV 83 (401)
T ss_pred HHHHHHhCCCCEE--EECCCCChHHHHHH
Confidence 4567788999864 57899999998754
No 356
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=54.30 E-value=6.4 Score=49.67 Aligned_cols=36 Identities=33% Similarity=0.436 Sum_probs=27.5
Q ss_pred HHHHhchHHHHHHHH-cCcceeEEeecccCCCCceee
Q 001734 554 EEVFLDTRPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 589 (1019)
Q Consensus 554 eeVf~~~~pLV~svL-dG~N~~IfAYGQTGSGKTyTM 589 (1019)
--||.-+......++ .|-|-||+..|.+|||||+|+
T Consensus 66 PHif~~a~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 66 PHIFAVAQRAYRQMLRTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp SSHHHHHHHHHHHHHHHTSEEEEEEEESTTSSHHHHH
T ss_pred Cccchhhhcccccccccccccceeeccccccccccch
Confidence 347766544444443 688999999999999999985
No 357
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=54.24 E-value=4.1e+02 Score=30.99 Aligned_cols=23 Identities=13% Similarity=0.224 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001734 381 IESQKKLQELERLLTVSKKKVEE 403 (1019)
Q Consensus 381 ~~le~~l~e~~~~l~~~~~~~~~ 403 (1019)
+..|+.+.|++-+.+-++-+++.
T Consensus 241 aqvek~i~EfdiEre~LRAel~r 263 (561)
T KOG1103|consen 241 AQVEKLIEEFDIEREFLRAELER 263 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666555555544433
No 358
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=54.12 E-value=3.4e+02 Score=29.95 Aligned_cols=26 Identities=15% Similarity=0.110 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHHHhh
Q 001734 253 HRVACLLRKVVPLIERRTATQYQNFKN 279 (1019)
Q Consensus 253 ~~~~~~l~kvv~e~e~~is~q~~~~~~ 279 (1019)
-.+...+..|..|.|.. +.+|..+..
T Consensus 58 Gtl~~aw~~~~~e~e~~-a~~H~~la~ 83 (239)
T cd07658 58 GTLSSAWTCVAEEMESE-ADIHRNLGS 83 (239)
T ss_pred CcHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 44455566666666543 555544444
No 359
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=53.77 E-value=5.9e+02 Score=32.66 Aligned_cols=31 Identities=10% Similarity=0.199 Sum_probs=18.1
Q ss_pred HHHHHHHhhhcccchhHHHHHHHHHHHHHHH
Q 001734 333 EEQNALRLKKENDDRDIEISTLKQDLELAKR 363 (1019)
Q Consensus 333 ~e~~~~~l~ke~~~~~~e~~~Lk~ele~~k~ 363 (1019)
.++.-..||.+......+...|++++..+..
T Consensus 480 kdd~nfklm~e~~~~~q~~k~L~~ek~~l~~ 510 (698)
T KOG0978|consen 480 KDDKNFKLMSERIKANQKHKLLREEKSKLEE 510 (698)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666666666666666666555443
No 360
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=53.61 E-value=2.5e+02 Score=36.47 Aligned_cols=20 Identities=5% Similarity=-0.137 Sum_probs=14.8
Q ss_pred hhhHHHHHHHHHhhhhccCC
Q 001734 117 MAPVLQCLRSLRASFSFCDE 136 (1019)
Q Consensus 117 ~~~Vv~cL~aL~~~~~~k~~ 136 (1019)
.-.-++|+.|+..|+.+.++
T Consensus 271 ~l~~lD~l~a~a~~a~~~~~ 290 (782)
T PRK00409 271 IFDELDFIFARARYAKALKA 290 (782)
T ss_pred HHHHHHHHHHHHHHHHHCCC
Confidence 34557899999998877654
No 361
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=53.59 E-value=2.5e+02 Score=29.82 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhhhhhhhhhh
Q 001734 471 AAEKYHVILAENRRLYNEVQD 491 (1019)
Q Consensus 471 ~~~~~~~~l~erR~L~N~vqe 491 (1019)
.-++|+..-..||+.||+|.|
T Consensus 160 ~y~~~~~~wrk~krmf~ei~d 180 (201)
T KOG4603|consen 160 EYQKYCKEWRKRKRMFREIID 180 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345566666778889999876
No 362
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=53.39 E-value=4.2 Score=42.90 Aligned_cols=18 Identities=33% Similarity=0.516 Sum_probs=13.9
Q ss_pred eEEeecccCCCCceeeec
Q 001734 574 CIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 574 ~IfAYGQTGSGKTyTM~G 591 (1019)
.++.+|+||||||+++..
T Consensus 40 h~li~G~tgsGKS~~l~~ 57 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLRT 57 (205)
T ss_dssp SEEEE--TTSSHHHHHHH
T ss_pred eEEEEcCCCCCccHHHHH
Confidence 678999999999999864
No 363
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=53.28 E-value=2.3e+02 Score=31.31 Aligned_cols=97 Identities=19% Similarity=0.195 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccc------------hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001734 306 TEENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDD------------RDIEISTLKQDLELAKRTHELHCLQLE 373 (1019)
Q Consensus 306 ~ee~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~l~ke~~~------------~~~e~~~Lk~ele~~k~~~e~~~~~le 373 (1019)
++|++.|.++-+=+-.+-+.++++...-+++..++....+. .+.=+..|+.+|+.+ .-+.....+.
T Consensus 42 nee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~~~~k~~~dF~~~Lq~~Lk~V--~tde~k~~~~ 119 (230)
T PF03904_consen 42 NEEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFIDKTEKVHNDFQDILQDELKDV--DTDELKNIAQ 119 (230)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--chHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001734 374 EQIYETKIESQKKLQELERLLTVSKKKVEEL 404 (1019)
Q Consensus 374 ~~~~~~k~~le~~l~e~~~~l~~~~~~~~~l 404 (1019)
+..++.+.+++.-++|.+...++.++..+.+
T Consensus 120 ~ei~k~r~e~~~ml~evK~~~E~y~k~~k~~ 150 (230)
T PF03904_consen 120 NEIKKVREENKSMLQEVKQSHEKYQKRQKSM 150 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 364
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=53.17 E-value=7.9 Score=40.28 Aligned_cols=25 Identities=40% Similarity=0.604 Sum_probs=19.0
Q ss_pred HHHHHHcCcceeEEeecccCCCCceee
Q 001734 563 LIRSVLDGYNVCIFAYGQTGSGKTYTM 589 (1019)
Q Consensus 563 LV~svLdG~N~~IfAYGQTGSGKTyTM 589 (1019)
.++.++.|.| ++..++||+|||.+.
T Consensus 29 ~~~~~~~~~~--~li~~~TG~GKT~~~ 53 (203)
T cd00268 29 AIPPLLSGRD--VIGQAQTGSGKTAAF 53 (203)
T ss_pred HHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 4455666877 577899999999874
No 365
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=53.02 E-value=5.2 Score=44.09 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=16.4
Q ss_pred cceeEEeecccCCCCceeeec
Q 001734 571 YNVCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 571 ~N~~IfAYGQTGSGKTyTM~G 591 (1019)
.+..++..|..|||||+||..
T Consensus 12 ~~~~~lV~a~AGSGKT~~l~~ 32 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTLLE 32 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHHHH
T ss_pred CCCCEEEEeCCCCCchHHHHH
Confidence 667788889999999999865
No 366
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=52.98 E-value=2.5e+02 Score=32.04 Aligned_cols=47 Identities=11% Similarity=0.262 Sum_probs=28.7
Q ss_pred HHHhhHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHhhhHHHH
Q 001734 283 LFRAREEKYKSRIRVLETLTVGTTEENQVVANQLERIKTEKTNIAQK 329 (1019)
Q Consensus 283 ~~~~~~~~~~~~~~~le~l~~~~~ee~~~~~~~l~~l~~e~~k~eek 329 (1019)
.+|+-..+++--+..++++.++..+.+....-+|+.|-.|-++.=||
T Consensus 217 t~k~DakDWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEk 263 (384)
T KOG0972|consen 217 TLKQDAKDWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEK 263 (384)
T ss_pred hhccccHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Confidence 34445556666666677777777666666667777765555443333
No 367
>PRK13342 recombination factor protein RarA; Reviewed
Probab=52.85 E-value=7.5 Score=45.99 Aligned_cols=39 Identities=28% Similarity=0.428 Sum_probs=25.5
Q ss_pred ChHHHHhchHHHHHHHHcCcceeEEeecccCCCCceeee
Q 001734 552 SQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMS 590 (1019)
Q Consensus 552 tQeeVf~~~~pLV~svLdG~N~~IfAYGQTGSGKTyTM~ 590 (1019)
.|+.+.....++...+-.+.-..++-||++|+|||++..
T Consensus 16 Gq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 16 GQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLAR 54 (413)
T ss_pred CcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHH
Confidence 455555543444444445555567779999999998764
No 368
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=52.78 E-value=4.6 Score=51.30 Aligned_cols=40 Identities=25% Similarity=0.337 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhhhhhhhhhccc
Q 001734 839 ELMEQVGSLKDIITKKDEEIERLQVL-KANISGVRHRVRSL 878 (1019)
Q Consensus 839 eL~~ev~~Lk~~i~~~~eei~~lq~l-~~~~~~~r~~~~~~ 878 (1019)
....++..|+..+..++....||+.. ...+...|..+.++
T Consensus 603 ~~~~e~~~l~~~~~~~ekr~~RLkevf~~ks~eFr~av~~l 643 (722)
T PF05557_consen 603 SQEKEIAELKAELASAEKRNQRLKEVFKAKSQEFREAVYSL 643 (722)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777776666666533 33344555555443
No 369
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=52.66 E-value=7.9e+02 Score=33.76 Aligned_cols=18 Identities=22% Similarity=0.401 Sum_probs=12.3
Q ss_pred hhhccCCccccceeEecCCC
Q 001734 784 LQSSLGGQAKTLMMVQLNPD 803 (1019)
Q Consensus 784 LqdSLGGnskT~mI~~ISP~ 803 (1019)
|-++||+||..+ +=.-|.
T Consensus 1200 LAEtf~snCgvL--ALDEPT 1217 (1294)
T KOG0962|consen 1200 LAETFGSNCGVL--ALDEPT 1217 (1294)
T ss_pred HHHHHhhccccc--cccCCc
Confidence 778999999844 334453
No 370
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=52.34 E-value=5.2 Score=44.99 Aligned_cols=18 Identities=44% Similarity=0.549 Sum_probs=14.5
Q ss_pred eEEeecccCCCCceeeec
Q 001734 574 CIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 574 ~IfAYGQTGSGKTyTM~G 591 (1019)
.|.-.|+||+|||+|+..
T Consensus 196 vi~~vGptGvGKTTt~~k 213 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAK 213 (282)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 445569999999999865
No 371
>KOG2856 consensus Adaptor protein PACSIN [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=52.04 E-value=2.6e+02 Score=32.97 Aligned_cols=30 Identities=33% Similarity=0.479 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhHHHHHhhh
Q 001734 433 IQDLRVAFESTKHEVLETKKNYSKEFDCLG 462 (1019)
Q Consensus 433 l~el~~~~~~~k~ei~~~~~~~~~e~~~l~ 462 (1019)
++.|+..++.+++++++++.+|..-+..|.
T Consensus 179 ~kKlqdrveK~k~evqktkekYektl~el~ 208 (472)
T KOG2856|consen 179 LKKLQDRVEKCKQEVQKTKEKYEKTLAELN 208 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566777788899999999999988887776
No 372
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=51.97 E-value=4.2 Score=38.79 Aligned_cols=16 Identities=38% Similarity=0.696 Sum_probs=13.9
Q ss_pred EEeecccCCCCceeee
Q 001734 575 IFAYGQTGSGKTYTMS 590 (1019)
Q Consensus 575 IfAYGQTGSGKTyTM~ 590 (1019)
|+-||++|.|||+.+.
T Consensus 1 I~i~G~~G~GKS~l~~ 16 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAK 16 (107)
T ss_pred CEEECCCCCCHHHHHH
Confidence 5789999999998874
No 373
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=51.89 E-value=3.2e+02 Score=35.04 Aligned_cols=18 Identities=33% Similarity=0.495 Sum_probs=11.9
Q ss_pred eEEeec-ccCCCCceeeec
Q 001734 574 CIFAYG-QTGSGKTYTMSG 591 (1019)
Q Consensus 574 ~IfAYG-QTGSGKTyTM~G 591 (1019)
+|...| ..|.|||++-..
T Consensus 533 vI~vtS~~~g~GKTtva~n 551 (726)
T PRK09841 533 ILMITGATPDSGKTFVSST 551 (726)
T ss_pred EEEEecCCCCCCHHHHHHH
Confidence 444444 459999998654
No 374
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=51.87 E-value=5.7 Score=39.82 Aligned_cols=15 Identities=33% Similarity=0.534 Sum_probs=12.2
Q ss_pred EEeecccCCCCceee
Q 001734 575 IFAYGQTGSGKTYTM 589 (1019)
Q Consensus 575 IfAYGQTGSGKTyTM 589 (1019)
+--.|+||+||||+-
T Consensus 56 lSfHG~tGtGKn~v~ 70 (127)
T PF06309_consen 56 LSFHGWTGTGKNFVS 70 (127)
T ss_pred EEeecCCCCcHHHHH
Confidence 446799999999973
No 375
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=51.86 E-value=7.9 Score=46.18 Aligned_cols=26 Identities=35% Similarity=0.572 Sum_probs=20.1
Q ss_pred HHHHHHHcCcceeEEeecccCCCCceee
Q 001734 562 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 589 (1019)
Q Consensus 562 pLV~svLdG~N~~IfAYGQTGSGKTyTM 589 (1019)
..+..+++|.| +++.++||||||.+.
T Consensus 33 ~ai~~~l~g~d--vi~~a~TGsGKT~a~ 58 (460)
T PRK11776 33 QSLPAILAGKD--VIAQAKTGSGKTAAF 58 (460)
T ss_pred HHHHHHhcCCC--EEEECCCCCcHHHHH
Confidence 34566788988 567889999999763
No 376
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=51.70 E-value=10 Score=43.41 Aligned_cols=43 Identities=23% Similarity=0.300 Sum_probs=25.2
Q ss_pred CCCCChHHHHhc-hHHHHHH-HHcCcceeEEeecccCCCCceeee
Q 001734 548 GPEASQEEVFLD-TRPLIRS-VLDGYNVCIFAYGQTGSGKTYTMS 590 (1019)
Q Consensus 548 ~~~atQeeVf~~-~~pLV~s-vLdG~N~~IfAYGQTGSGKTyTM~ 590 (1019)
-|-+.-+-++++ +..++.. +..+.---.+-||+.|+|||.|..
T Consensus 31 rPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStal 75 (346)
T KOG0989|consen 31 RPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTAL 75 (346)
T ss_pred CCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHH
Confidence 333333444443 3333433 444344456789999999999974
No 377
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=51.59 E-value=5.4e+02 Score=32.44 Aligned_cols=18 Identities=17% Similarity=0.202 Sum_probs=12.9
Q ss_pred cchhHHHHHHHHHHHhhc
Q 001734 600 WGVNYRALNDLFEISESR 617 (1019)
Q Consensus 600 ~GIipRal~~LF~~~~~~ 617 (1019)
+-=.+|-+..||..+...
T Consensus 485 ~er~~rglrnifgKlrRS 502 (861)
T KOG1899|consen 485 RERTRRGLRNIFGKLRRS 502 (861)
T ss_pred cccchhHHHHHHHHhhhc
Confidence 345678899999877543
No 378
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=51.49 E-value=2e+02 Score=29.77 Aligned_cols=21 Identities=14% Similarity=0.286 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhh
Q 001734 467 RLIDAAEKYHVILAENRRLYN 487 (1019)
Q Consensus 467 ~l~~~~~~~~~~l~erR~L~N 487 (1019)
.+...-..|+.....||+++|
T Consensus 149 ~~~~~~~~~~k~w~kRKri~k 169 (169)
T PF07106_consen 149 KLEKEYKKWRKEWKKRKRICK 169 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 344445556666667888765
No 379
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=51.44 E-value=5.6e+02 Score=31.66 Aligned_cols=46 Identities=24% Similarity=0.315 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 001734 326 IAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQ 371 (1019)
Q Consensus 326 ~eek~~~~e~~~~~l~ke~~~~~~e~~~Lk~ele~~k~~~e~~~~~ 371 (1019)
++|+....++.+..+++..-+.+..+..|...+..-.++...+..+
T Consensus 342 LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld~qEqtL~~rL~e 387 (531)
T PF15450_consen 342 LQEKSQILEDSVAELMRQLKDLDDHILALSWRLDLQEQTLNLRLSE 387 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 4555556666677777777666666666555554444444433333
No 380
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=51.41 E-value=5.7e+02 Score=31.74 Aligned_cols=31 Identities=23% Similarity=0.251 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHh-----hhhhhhhhhccCC
Q 001734 465 LKRLIDAAEKYHVILAEN-----RRLYNEVQDLKGN 495 (1019)
Q Consensus 465 l~~l~~~~~~~~~~l~er-----R~L~N~vqelkGn 495 (1019)
++.|.-++......+..- +-|..+|.-|+.-
T Consensus 407 ~~~l~~a~~~l~~~l~~~~~~~~~p~~~el~~l~~~ 442 (582)
T PF09731_consen 407 AQQLWLAVDALKSALDSGNAGSPRPFEDELRALKEL 442 (582)
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHHHh
Confidence 444555555555444433 6677777766654
No 381
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=51.38 E-value=5.3 Score=46.39 Aligned_cols=30 Identities=27% Similarity=0.470 Sum_probs=20.9
Q ss_pred HHHHHHHHcCcceeEEeecccCCCCceeeec
Q 001734 561 RPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 561 ~pLV~svLdG~N~~IfAYGQTGSGKTyTM~G 591 (1019)
..++..++.+ ...|+..|+||||||++|-.
T Consensus 152 ~~~l~~~v~~-~~nilI~G~tGSGKTTll~a 181 (344)
T PRK13851 152 EAFLHACVVG-RLTMLLCGPTGSGKTTMSKT 181 (344)
T ss_pred HHHHHHHHHc-CCeEEEECCCCccHHHHHHH
Confidence 4555555532 33467799999999999854
No 382
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=51.13 E-value=8.3 Score=44.91 Aligned_cols=37 Identities=27% Similarity=0.520 Sum_probs=26.4
Q ss_pred CCChHHHHhchHHHHHHHHcCcceeEEeecccCCCCceee
Q 001734 550 EASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTM 589 (1019)
Q Consensus 550 ~atQeeVf~~~~pLV~svLdG~N~~IfAYGQTGSGKTyTM 589 (1019)
+..|..+|..+-..+.. .+| ..+|.-|+-|+||||.+
T Consensus 3 n~eQ~~~~~~v~~~~~~-~~~--~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 3 NEEQRRVFDTVIEAIEN-EEG--LNFFVTGPAGTGKSFLI 39 (364)
T ss_pred CHHHHHHHHHHHHHHHc-cCC--cEEEEEcCCCCChhHHH
Confidence 35688899876333332 344 56688999999999986
No 383
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=50.98 E-value=5.8 Score=38.78 Aligned_cols=15 Identities=40% Similarity=0.578 Sum_probs=13.4
Q ss_pred EEeecccCCCCceee
Q 001734 575 IFAYGQTGSGKTYTM 589 (1019)
Q Consensus 575 IfAYGQTGSGKTyTM 589 (1019)
|+.+|.+|||||+..
T Consensus 2 ii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 2 IILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999874
No 384
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=50.87 E-value=9.8 Score=42.66 Aligned_cols=47 Identities=23% Similarity=0.355 Sum_probs=31.1
Q ss_pred ceeEEeecccCCCCceeeecCCCC-------------CCCccchhHHHHHHHHHHHhhcc
Q 001734 572 NVCIFAYGQTGSGKTYTMSGPCIS-------------STEDWGVNYRALNDLFEISESRK 618 (1019)
Q Consensus 572 N~~IfAYGQTGSGKTyTM~G~~~~-------------~~~~~GIipRal~~LF~~~~~~~ 618 (1019)
--.|+-||++|+|||++--.-.+. -.+.-|=-.|-+++||+......
T Consensus 151 PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA~~~a 210 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERARKAA 210 (368)
T ss_pred cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence 446788999999999864321000 02344666788999998776543
No 385
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=50.79 E-value=7.9 Score=47.38 Aligned_cols=32 Identities=25% Similarity=0.501 Sum_probs=25.0
Q ss_pred chHHHHHHHHcCcc--eeEEeecccCCCCceeee
Q 001734 559 DTRPLIRSVLDGYN--VCIFAYGQTGSGKTYTMS 590 (1019)
Q Consensus 559 ~~~pLV~svLdG~N--~~IfAYGQTGSGKTyTM~ 590 (1019)
+++..++..+.|.. .-++.+|++|||||.|+-
T Consensus 30 eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~ 63 (519)
T PF03215_consen 30 EVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVK 63 (519)
T ss_pred HHHHHHHHHhccCCCcceEEEECCCCCCHHHHHH
Confidence 35777887776664 457889999999999983
No 386
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=50.37 E-value=14 Score=44.45 Aligned_cols=95 Identities=20% Similarity=0.257 Sum_probs=44.6
Q ss_pred EEEEeecCCCCCCcc-CCCccEEEeCCCCeEEEeCCCCCC-------CCCceeeeeceeeCCCCChHHHHhch-HHHHHH
Q 001734 496 IRVYCRIRPFLPGQS-KKQTTIEYIGENGELVVSNPLKQG-------KDNHRLFKFNKVFGPEASQEEVFLDT-RPLIRS 566 (1019)
Q Consensus 496 IrV~~RVRP~~~~e~-~~~~~v~~~~~~~~~~i~~p~~~~-------~~~~k~F~FD~VF~~~atQeeVf~~~-~pLV~s 566 (1019)
-..+++|.++...+. ...+.+.+....+.++-.-|.... ......-+|+-|.+-+..-+++.+.+ .|+...
T Consensus 127 ~~~~~~~~~~~~~~~l~~~~~v~l~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p 206 (438)
T PTZ00361 127 PEYYVNILSFVDKEQLEPGCSVLLHNKTHSVVGILLDEVDPLVSVMKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHP 206 (438)
T ss_pred CEEEEeccCcCCHhhCCCCCEEEEcCCCCceEecCccccchhhhhcccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCH
Confidence 467889988876554 334444444333433322221100 00111134444443333333333332 233321
Q ss_pred -HHc--Cc--ceeEEeecccCCCCceeee
Q 001734 567 -VLD--GY--NVCIFAYGQTGSGKTYTMS 590 (1019)
Q Consensus 567 -vLd--G~--N~~IfAYGQTGSGKTyTM~ 590 (1019)
.+. |. ...|+-||++|+|||++.-
T Consensus 207 ~~~~~~gi~~p~gVLL~GPPGTGKT~LAr 235 (438)
T PTZ00361 207 ELYDDIGIKPPKGVILYGPPGTGKTLLAK 235 (438)
T ss_pred HHHHhcCCCCCcEEEEECCCCCCHHHHHH
Confidence 111 22 2347789999999998763
No 387
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=50.23 E-value=4.8e+02 Score=30.51 Aligned_cols=13 Identities=15% Similarity=0.117 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHhh
Q 001734 604 YRALNDLFEISES 616 (1019)
Q Consensus 604 pRal~~LF~~~~~ 616 (1019)
..-++.||+.+.+
T Consensus 282 sLdcRrLfDsLre 294 (401)
T PF06785_consen 282 SLDCRRLFDSLRE 294 (401)
T ss_pred hHHHHHHHhhhcc
Confidence 3456677776544
No 388
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=50.22 E-value=2.9e+02 Score=28.02 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=7.4
Q ss_pred cccchhHHHHHHHHHHHH
Q 001734 343 ENDDRDIEISTLKQDLEL 360 (1019)
Q Consensus 343 e~~~~~~e~~~Lk~ele~ 360 (1019)
+.+.....+..|+.+++.
T Consensus 67 d~~~l~~~~~rL~~~~~~ 84 (151)
T PF11559_consen 67 DIERLQNDVERLKEQLEE 84 (151)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333444444444443
No 389
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=50.06 E-value=6e+02 Score=31.60 Aligned_cols=16 Identities=25% Similarity=0.596 Sum_probs=9.0
Q ss_pred hhhhhhhhhccCCEEE
Q 001734 483 RRLYNEVQDLKGNIRV 498 (1019)
Q Consensus 483 R~L~N~vqelkGnIrV 498 (1019)
++.++.+..+-|.+++
T Consensus 358 ~qI~dkl~s~~~~~~~ 373 (591)
T KOG2412|consen 358 RQIFDKLDSLFGGIPD 373 (591)
T ss_pred HHHHHHHHHHhcCCCC
Confidence 4556666666555543
No 390
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=49.95 E-value=5.7e+02 Score=31.37 Aligned_cols=24 Identities=8% Similarity=0.169 Sum_probs=10.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 001734 347 RDIEISTLKQDLELAKRTHELHCL 370 (1019)
Q Consensus 347 ~~~e~~~Lk~ele~~k~~~e~~~~ 370 (1019)
...+...|..+++..++.++++..
T Consensus 79 ~~~~~~~l~~~le~~~~~~~ek~~ 102 (475)
T PRK10361 79 LEADLREVTTRMEAAQQHADDKIR 102 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444333
No 391
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=49.87 E-value=7.9 Score=44.72 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=20.3
Q ss_pred HHHHHHHHcCcceeEEeecccCCCCceeee
Q 001734 561 RPLIRSVLDGYNVCIFAYGQTGSGKTYTMS 590 (1019)
Q Consensus 561 ~pLV~svLdG~N~~IfAYGQTGSGKTyTM~ 590 (1019)
..++..++.+. ..|+..|.||||||++|-
T Consensus 150 ~~~L~~~v~~~-~nili~G~tgSGKTTll~ 178 (332)
T PRK13900 150 KEFLEHAVISK-KNIIISGGTSTGKTTFTN 178 (332)
T ss_pred HHHHHHHHHcC-CcEEEECCCCCCHHHHHH
Confidence 45555555432 346778999999999884
No 392
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=49.42 E-value=6.7 Score=40.90 Aligned_cols=17 Identities=29% Similarity=0.352 Sum_probs=14.7
Q ss_pred eeEEeecccCCCCceee
Q 001734 573 VCIFAYGQTGSGKTYTM 589 (1019)
Q Consensus 573 ~~IfAYGQTGSGKTyTM 589 (1019)
+.++-+|+||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 46889999999999965
No 393
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=49.16 E-value=6.4 Score=37.34 Aligned_cols=15 Identities=47% Similarity=0.419 Sum_probs=13.1
Q ss_pred EEeecccCCCCceee
Q 001734 575 IFAYGQTGSGKTYTM 589 (1019)
Q Consensus 575 IfAYGQTGSGKTyTM 589 (1019)
|+-.|.+|||||+..
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 678999999999875
No 394
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=48.94 E-value=16 Score=40.32 Aligned_cols=42 Identities=29% Similarity=0.309 Sum_probs=28.5
Q ss_pred eCCCCChHHHHhchHHHHHHHHc-C-cceeEEeecccCCCCcee
Q 001734 547 FGPEASQEEVFLDTRPLIRSVLD-G-YNVCIFAYGQTGSGKTYT 588 (1019)
Q Consensus 547 F~~~atQeeVf~~~~pLV~svLd-G-~N~~IfAYGQTGSGKTyT 588 (1019)
|++-..|+.|-...+.+++.+.. | .=..++-||+.|.|||..
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTL 66 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHH
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHH
Confidence 34456788898877888888764 2 233578899999999754
No 395
>PRK13764 ATPase; Provisional
Probab=48.90 E-value=7.8 Score=48.19 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=16.7
Q ss_pred ceeEEeecccCCCCceeeec
Q 001734 572 NVCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 572 N~~IfAYGQTGSGKTyTM~G 591 (1019)
...|+..|+||||||+++..
T Consensus 257 ~~~ILIsG~TGSGKTTll~A 276 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQA 276 (602)
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 34489999999999999854
No 396
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=48.82 E-value=5.6e+02 Score=30.91 Aligned_cols=32 Identities=16% Similarity=0.255 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhhhccC
Q 001734 463 LNLKRLIDAAEKYHVILAENRRLYNEVQDLKG 494 (1019)
Q Consensus 463 ~~l~~l~~~~~~~~~~l~erR~L~N~vqelkG 494 (1019)
.++-.+-.+.+..+..+.||-.=+-||.-+-|
T Consensus 397 ~kIleak~al~evtt~lrErl~RWqQIE~lcG 428 (575)
T KOG4403|consen 397 HKILEAKSALSEVTTLLRERLHRWQQIESLCG 428 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44444555666667777677666677777666
No 397
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=48.74 E-value=2.3e+02 Score=30.24 Aligned_cols=93 Identities=24% Similarity=0.329 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhHHH
Q 001734 378 ETKIESQKKLQELERLLTVSKKKVEELESLSESKSQRWKRIEHSYQSFMGCQLGVIQDLRVAFESTKHEVLETKKNYSKE 457 (1019)
Q Consensus 378 ~~k~~le~~l~e~~~~l~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~l~~Q~~~l~el~~~~~~~k~ei~~~~~~~~~e 457 (1019)
+....++.++..+...++.++.++.+++..-+........-..+.. ....+++|+.....++.++......--+.
T Consensus 62 ~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~-----~l~~l~~l~~~~~~l~~el~~~~~~Dp~~ 136 (188)
T PF03962_consen 62 QAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREE-----LLEELEELKKELKELKKELEKYSENDPEK 136 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Q ss_pred HHhhhhhHHHHHHHHHHH
Q 001734 458 FDCLGLNLKRLIDAAEKY 475 (1019)
Q Consensus 458 ~~~l~~~l~~l~~~~~~~ 475 (1019)
+..+...+..+.+++.++
T Consensus 137 i~~~~~~~~~~~~~anrw 154 (188)
T PF03962_consen 137 IEKLKEEIKIAKEAANRW 154 (188)
T ss_pred HHHHHHHHHHHHHHHHHH
No 398
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=48.67 E-value=7.2 Score=46.89 Aligned_cols=66 Identities=29% Similarity=0.438 Sum_probs=41.5
Q ss_pred HHHHHcCcceeEEeecccCCCCceeeecCCC----------CCCCccchhHH---------HHHHHHHHHhhccCCceEE
Q 001734 564 IRSVLDGYNVCIFAYGQTGSGKTYTMSGPCI----------SSTEDWGVNYR---------ALNDLFEISESRKNSILYE 624 (1019)
Q Consensus 564 V~svLdG~N~~IfAYGQTGSGKTyTM~G~~~----------~~~~~~GIipR---------al~~LF~~~~~~~~~~~~~ 624 (1019)
|..+.+|.+. +|++|||||||+...+|-. ......|..|+ .+.+||.... ...|.
T Consensus 105 ip~i~~Grdl--~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~----k~~~~ 178 (482)
T KOG0335|consen 105 IPIISGGRDL--MACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEAR----KFSYL 178 (482)
T ss_pred cceeecCCce--EEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHH----hhccc
Confidence 4555677665 8999999999999987610 00011112232 3567776544 34567
Q ss_pred EEEEEEEEecc
Q 001734 625 VGVQMVEIYNE 635 (1019)
Q Consensus 625 V~vS~lEIYnE 635 (1019)
-.+-.+.+|+.
T Consensus 179 s~~~~~~~ygg 189 (482)
T KOG0335|consen 179 SGMKSVVVYGG 189 (482)
T ss_pred ccceeeeeeCC
Confidence 77778889976
No 399
>PRK11519 tyrosine kinase; Provisional
Probab=48.42 E-value=4e+02 Score=34.16 Aligned_cols=21 Identities=24% Similarity=0.297 Sum_probs=13.8
Q ss_pred cceeEEeecccCCCCceeeec
Q 001734 571 YNVCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 571 ~N~~IfAYGQTGSGKTyTM~G 591 (1019)
.++.+++-...|.|||++-..
T Consensus 526 ~kvi~vts~~~geGKTt~a~n 546 (719)
T PRK11519 526 NNVLMMTGVSPSIGKTFVCAN 546 (719)
T ss_pred ceEEEEECCCCCCCHHHHHHH
Confidence 344455555779999998653
No 400
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=48.30 E-value=9.5 Score=45.08 Aligned_cols=26 Identities=35% Similarity=0.571 Sum_probs=20.8
Q ss_pred HHHHHHHcCcceeEEeecccCCCCceee
Q 001734 562 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 589 (1019)
Q Consensus 562 pLV~svLdG~N~~IfAYGQTGSGKTyTM 589 (1019)
..|..+++|-| +++.++||||||.+.
T Consensus 30 ~ai~~~~~g~d--~l~~apTGsGKT~~~ 55 (434)
T PRK11192 30 EAIPPALDGRD--VLGSAPTGTGKTAAF 55 (434)
T ss_pred HHHHHHhCCCC--EEEECCCCChHHHHH
Confidence 34666788887 788899999999873
No 401
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=48.08 E-value=4.6e+02 Score=29.74 Aligned_cols=42 Identities=14% Similarity=0.274 Sum_probs=24.5
Q ss_pred HHHHHHHHHHH--hhhhccchhhHHHHHHHHHHHHHHhhhHHHHH
Q 001734 288 EEKYKSRIRVL--ETLTVGTTEENQVVANQLERIKTEKTNIAQKE 330 (1019)
Q Consensus 288 ~~~~~~~~~~l--e~l~~~~~ee~~~~~~~l~~l~~e~~k~eek~ 330 (1019)
-++|++|+..+ |++.... ..+-.+..+++.|.+|-.+|+.+.
T Consensus 32 me~~q~kL~l~~~e~l~~s~-~ql~ll~~~~k~L~aE~~qwqk~~ 75 (268)
T PF11802_consen 32 MEECQNKLSLIGTETLTDSD-AQLSLLMMRVKCLTAELEQWQKRT 75 (268)
T ss_pred HHHHHHHHhhcCCCCCCCcc-hhHHHHHHHHHHHHHHHHHHHhcC
Confidence 34556666555 3333222 234456677777888888888753
No 402
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=48.05 E-value=1.6e+02 Score=36.60 Aligned_cols=18 Identities=0% Similarity=0.054 Sum_probs=11.2
Q ss_pred eeeeceeeCCCCChHHHH
Q 001734 540 LFKFNKVFGPEASQEEVF 557 (1019)
Q Consensus 540 ~F~FD~VF~~~atQeeVf 557 (1019)
.+.|+.....=+++.+++
T Consensus 356 ~~~~~~~~~niT~~~~~~ 373 (555)
T TIGR03545 356 VGEIKGEVSNITNDHDLL 373 (555)
T ss_pred cceEEEEEEecCCChhhh
Confidence 456777666656666655
No 403
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=47.96 E-value=3.3e+02 Score=34.84 Aligned_cols=22 Identities=14% Similarity=0.153 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhH
Q 001734 254 RVACLLRKVVPLIERRTATQYQ 275 (1019)
Q Consensus 254 ~~~~~l~kvv~e~e~~is~q~~ 275 (1019)
-++..|..+++|.++|+..+..
T Consensus 490 ~~~~~l~~llee~~~~~~~~~~ 511 (809)
T KOG0247|consen 490 NDKETLDQLLEELEKRILLRTK 511 (809)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 3466888899999999988766
No 404
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=47.88 E-value=4.9e+02 Score=34.13 Aligned_cols=139 Identities=14% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhhHHHhhhhhHHHhhHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 001734 257 CLLRKVVPLIERRTATQYQNFKNQNNLFRAREEKYKSRIRVLETLTVGTTEENQVVANQLERIKTEKTNIAQKEKLEEQN 336 (1019)
Q Consensus 257 ~~l~kvv~e~e~~is~q~~~~~~q~~~~~~~~~~~~~~~~~le~l~~~~~ee~~~~~~~l~~l~~e~~k~eek~~~~e~~ 336 (1019)
.+++-+=+-.+...-.+-+|++.|+.+++.-....+ .+.+..|..-.+.|-..+...++..+.|..+. ++......+
T Consensus 1041 el~~~~~~~~~~e~e~k~~hl~~~~~~l~kl~~eaq--~~Q~k~LK~~~e~e~kElk~~l~kkr~e~ik~-~~~~kdK~e 1117 (1189)
T KOG1265|consen 1041 ELLEMRREQYEEEFELKEEHLKEQISLLRKLLSEAQ--TNQTKALKESLEKETKELKKKLDKKRMEDIKV-DKVIKDKAE 1117 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccccccHHH
Q ss_pred HHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001734 337 ALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLTVSKKK 400 (1019)
Q Consensus 337 ~~~l~ke~~~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le~~l~e~~~~l~~~~~~ 400 (1019)
..+..+|+... .|....++...+.+..+++..+|..+-.+..+.|.+.-+.+..++..-...
T Consensus 1118 ~er~~rE~n~s--~i~~~V~e~krL~~~~~k~~e~L~k~~~~~leql~e~~kal~~e~~~~~e~ 1179 (1189)
T KOG1265|consen 1118 RERRKRELNSS--NIKEFVEERKRLAEKQSKRQEQLVKKHLEVLEQLAEEEKALDAEAEQEYEE 1179 (1189)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
No 405
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=47.79 E-value=8e+02 Score=32.41 Aligned_cols=230 Identities=18% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhHHHhhhhhHHHhhHHHHHHHHHHHhhhhccc-hhhHHHHHHHHHHHHHHhhhHHHHHHHHH---
Q 001734 259 LRKVVPLIERRTATQYQNFKNQNNLFRAREEKYKSRIRVLETLTVGT-TEENQVVANQLERIKTEKTNIAQKEKLEE--- 334 (1019)
Q Consensus 259 l~kvv~e~e~~is~q~~~~~~q~~~~~~~~~~~~~~~~~le~l~~~~-~ee~~~~~~~l~~l~~e~~k~eek~~~~e--- 334 (1019)
+.+.+.+++.....+........+..+...++...+.--++.+.... .+.+..-...+.+...+...+.+......
T Consensus 506 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~e~~~~~~~~~~~~~l~~e~~~le~~~~~l~~~~~~~~~~~~~~ 585 (908)
T COG0419 506 LEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRK 585 (908)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH-----HHHHHH-HHHHHHHHHH
Q 001734 335 QNALRLKKENDDRDIEISTLKQDLELAKRTHELH-----CLQLEEQIYETKIESQKKL-----QELERL-LTVSKKKVEE 403 (1019)
Q Consensus 335 ~~~~~l~ke~~~~~~e~~~Lk~ele~~k~~~e~~-----~~~le~~~~~~k~~le~~l-----~e~~~~-l~~~~~~~~~ 403 (1019)
+.+..+.............+.+.+..++...... ..+++....+....+++-. .++... +.+...+++.
T Consensus 586 ~~l~~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~ 665 (908)
T COG0419 586 EELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEE 665 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhhhHHHHHHHHhHhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHHHHHHHhh
Q 001734 404 LESLSESKSQRWKRIEHSYQSFMGCQLGVIQDLRVAFESTKHEVLETKKNYSKEFDCLGLNLKRLIDAAEKYHVILAENR 483 (1019)
Q Consensus 404 le~~~~~~~~~~~~~~~~~~~~l~~Q~~~l~el~~~~~~~k~ei~~~~~~~~~e~~~l~~~l~~l~~~~~~~~~~l~erR 483 (1019)
+++.... .-.......++...++. ++.+...+.+++.++....+.... ....-.++.......+.+...+..-.
T Consensus 666 ~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~el~~~~~~l~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~ 739 (908)
T COG0419 666 LEAEIRR-ELQRIENEEQLEEKLEE----LEQLEEELEQLREELEELLKKLGE-IEQLIEELESRKAELEELKKELEKLE 739 (908)
T ss_pred HHHHHHH-HHHHHHHHHHHHhhHHH----HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhhccC
Q 001734 484 RLYNEVQDLKG 494 (1019)
Q Consensus 484 ~L~N~vqelkG 494 (1019)
+.|+.+..+.+
T Consensus 740 ~~~~~~~~l~~ 750 (908)
T COG0419 740 KALELLEELRE 750 (908)
T ss_pred HHHHHHHHHHH
No 406
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=47.38 E-value=2.1e+02 Score=26.24 Aligned_cols=65 Identities=20% Similarity=0.264 Sum_probs=41.6
Q ss_pred hcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001734 342 KENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLTVSKKKVEELESL 407 (1019)
Q Consensus 342 ke~~~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le~~l~e~~~~l~~~~~~~~~le~~ 407 (1019)
.+.+.....|..++..++.++..|.......... ...+.+++.-..+........+.+|+.+++.
T Consensus 7 ~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d-~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~ 71 (103)
T PF00804_consen 7 DEVQEIREDIDKIKEKLNELRKLHKKILSSPDQD-SELKRELDELTDEIKQLFQKIKKRLKQLSKD 71 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455667777777777777777665554422 3456666666667777777777777776654
No 407
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=47.28 E-value=6 Score=38.81 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=13.8
Q ss_pred EEeecccCCCCceeee
Q 001734 575 IFAYGQTGSGKTYTMS 590 (1019)
Q Consensus 575 IfAYGQTGSGKTyTM~ 590 (1019)
|+-+|++|+|||+.+.
T Consensus 2 vlL~G~~G~GKt~l~~ 17 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLAR 17 (139)
T ss_dssp EEEEESSSSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6789999999998764
No 408
>PRK04195 replication factor C large subunit; Provisional
Probab=47.13 E-value=12 Score=45.19 Aligned_cols=33 Identities=33% Similarity=0.452 Sum_probs=23.4
Q ss_pred hchHHHHHHHHcCc-ceeEEeecccCCCCceeee
Q 001734 558 LDTRPLIRSVLDGY-NVCIFAYGQTGSGKTYTMS 590 (1019)
Q Consensus 558 ~~~~pLV~svLdG~-N~~IfAYGQTGSGKTyTM~ 590 (1019)
.....++.....|. .-.++-||++|+|||++..
T Consensus 24 ~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 24 EQLREWIESWLKGKPKKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred HHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 33455555555664 4568889999999998863
No 409
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=47.08 E-value=4.5e+02 Score=29.30 Aligned_cols=26 Identities=19% Similarity=0.218 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001734 349 IEISTLKQDLELAKRTHELHCLQLEE 374 (1019)
Q Consensus 349 ~e~~~Lk~ele~~k~~~e~~~~~le~ 374 (1019)
.....+-.+++.+|+.|+..|.+.+.
T Consensus 126 k~~~~~~~~l~kaKk~Y~~~cke~e~ 151 (258)
T cd07655 126 KPWAKLLKKVEKAKKAYHAACKAEKS 151 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444456788888999998888765
No 410
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=47.07 E-value=13 Score=47.18 Aligned_cols=18 Identities=44% Similarity=0.674 Sum_probs=15.4
Q ss_pred ceeEEeecccCCCCceee
Q 001734 572 NVCIFAYGQTGSGKTYTM 589 (1019)
Q Consensus 572 N~~IfAYGQTGSGKTyTM 589 (1019)
|-.++.+|+||||||+-+
T Consensus 271 n~vvIIcGeTGsGKTTQv 288 (1172)
T KOG0926|consen 271 NPVVIICGETGSGKTTQV 288 (1172)
T ss_pred CCeEEEecCCCCCccccc
Confidence 556788999999999877
No 411
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=46.92 E-value=7.3e+02 Score=31.73 Aligned_cols=17 Identities=29% Similarity=0.309 Sum_probs=11.7
Q ss_pred CCCcchHHHHHHHHHhH
Q 001734 226 NASTKSLFNIVNRILDE 242 (1019)
Q Consensus 226 ~~~~~~l~~~~~~~l~~ 242 (1019)
|..++|+.+.+..-|.-
T Consensus 57 n~~~~s~~~~~~~~l~~ 73 (716)
T KOG4593|consen 57 NITSKSLLMQLEDELMQ 73 (716)
T ss_pred cchhHHHHHHHHHHHHH
Confidence 56777888877765543
No 412
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=46.45 E-value=57 Score=42.05 Aligned_cols=16 Identities=31% Similarity=0.341 Sum_probs=13.5
Q ss_pred eEEeecccCCCCceee
Q 001734 574 CIFAYGQTGSGKTYTM 589 (1019)
Q Consensus 574 ~IfAYGQTGSGKTyTM 589 (1019)
.++-||++|+|||+..
T Consensus 349 ~lll~GppG~GKT~lA 364 (775)
T TIGR00763 349 ILCLVGPPGVGKTSLG 364 (775)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4677999999999765
No 413
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=46.42 E-value=10 Score=42.62 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=17.5
Q ss_pred cCc-ceeEEeecccCCCCceeeec
Q 001734 569 DGY-NVCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 569 dG~-N~~IfAYGQTGSGKTyTM~G 591 (1019)
.|- ...++-||++|+|||+.+..
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la~~ 62 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVAKA 62 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHHHH
Confidence 453 45677799999999998753
No 414
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=46.23 E-value=12 Score=47.28 Aligned_cols=31 Identities=26% Similarity=0.250 Sum_probs=21.7
Q ss_pred hHHHHHHHHc-----CcceeEEeecccCCCCceeeec
Q 001734 560 TRPLIRSVLD-----GYNVCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 560 ~~pLV~svLd-----G~N~~IfAYGQTGSGKTyTM~G 591 (1019)
+..++.++.. |.+..|+.. +||||||+||..
T Consensus 247 v~~~~~~~~~~~~~~~~~~gli~~-~TGsGKT~t~~~ 282 (667)
T TIGR00348 247 VKKIVESITRKTWGKDERGGLIWH-TQGSGKTLTMLF 282 (667)
T ss_pred HHHHHHHHHhcccCCCCceeEEEE-ecCCCccHHHHH
Confidence 5666777665 344555443 999999999975
No 415
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=46.15 E-value=2.5e+02 Score=36.01 Aligned_cols=56 Identities=27% Similarity=0.188 Sum_probs=34.6
Q ss_pred HHHHHHhhhcccchhH---HHHHHHHHHHHHH-HHHHHHHH------HHHHHHHHHHHHHHHHHHH
Q 001734 334 EQNALRLKKENDDRDI---EISTLKQDLELAK-RTHELHCL------QLEEQIYETKIESQKKLQE 389 (1019)
Q Consensus 334 e~~~~~l~ke~~~~~~---e~~~Lk~ele~~k-~~~e~~~~------~le~~~~~~k~~le~~l~e 389 (1019)
.+.+.+|+.|.++.-. .-..|++.|..++ +-++.... .|..+..+.+.++++++.+
T Consensus 461 ~e~IeKLk~E~d~e~S~A~~~~gLk~kL~~Lr~E~sKa~~~~~~~~~~L~eK~~kLk~Efnkkl~e 526 (762)
T PLN03229 461 NEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSKANSQDQLMHPVLMEKIEKLKDEFNKRLSR 526 (762)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHhhhc
Confidence 3445566666543222 2247888888888 44554321 2555677888888888887
No 416
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=46.12 E-value=2.8e+02 Score=31.94 Aligned_cols=18 Identities=11% Similarity=0.171 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001734 387 LQELERLLTVSKKKVEEL 404 (1019)
Q Consensus 387 l~e~~~~l~~~~~~~~~l 404 (1019)
+..+..++..++.+|++.
T Consensus 149 ~d~L~~e~~~Lre~L~~r 166 (302)
T PF09738_consen 149 HDSLREELDELREQLKQR 166 (302)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444433
No 417
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=46.05 E-value=5e+02 Score=29.52 Aligned_cols=43 Identities=14% Similarity=0.333 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhH
Q 001734 380 KIESQKKLQELERLLTVSKKKVEELESLSESKSQRWKRIEHSY 422 (1019)
Q Consensus 380 k~~le~~l~e~~~~l~~~~~~~~~le~~~~~~~~~~~~~~~~~ 422 (1019)
+..|+.+++.-+.+++..+++++.|++.+++=..++.+.+..+
T Consensus 192 e~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL 234 (267)
T PF10234_consen 192 EANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEEL 234 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 4456666666667777777777777777766665554444433
No 418
>PHA00729 NTP-binding motif containing protein
Probab=46.01 E-value=14 Score=40.59 Aligned_cols=30 Identities=23% Similarity=0.293 Sum_probs=21.2
Q ss_pred HHHHHHHcCcceeEEeecccCCCCceeeec
Q 001734 562 PLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 562 pLV~svLdG~N~~IfAYGQTGSGKTyTM~G 591 (1019)
.+++.+..|-=..|+.+|.+|+||||....
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~a 36 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALK 36 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHH
Confidence 345555433334799999999999998654
No 419
>PRK06547 hypothetical protein; Provisional
Probab=45.93 E-value=14 Score=38.53 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=18.6
Q ss_pred HHHHHHcCcceeEEeecccCCCCceee
Q 001734 563 LIRSVLDGYNVCIFAYGQTGSGKTYTM 589 (1019)
Q Consensus 563 LV~svLdG~N~~IfAYGQTGSGKTyTM 589 (1019)
.+..+..+.---|.-+|.+|||||+.-
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 344544455555667799999999864
No 420
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=45.88 E-value=11 Score=44.60 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=19.9
Q ss_pred HHHHHHHcCcceeEEeecccCCCCceee
Q 001734 562 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 589 (1019)
Q Consensus 562 pLV~svLdG~N~~IfAYGQTGSGKTyTM 589 (1019)
..|..++.|.|+ ++-++||||||.+.
T Consensus 37 ~aip~il~g~dv--i~~ApTGsGKTla~ 62 (423)
T PRK04837 37 LALPLTLAGRDV--AGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHHHhCCCcE--EEECCCCchHHHHH
Confidence 345667899885 55679999999864
No 421
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=45.77 E-value=1.3e+02 Score=40.41 Aligned_cols=27 Identities=41% Similarity=0.768 Sum_probs=22.0
Q ss_pred HHHHHHHHcCcceeEEeecccCCCCceee
Q 001734 561 RPLIRSVLDGYNVCIFAYGQTGSGKTYTM 589 (1019)
Q Consensus 561 ~pLV~svLdG~N~~IfAYGQTGSGKTyTM 589 (1019)
..+|..++.|.|+ |+.-+||+|||.+-
T Consensus 466 ~eaI~aiL~GrDV--LVimPTGSGKSLcY 492 (1195)
T PLN03137 466 REIINATMSGYDV--FVLMPTGGGKSLTY 492 (1195)
T ss_pred HHHHHHHHcCCCE--EEEcCCCccHHHHH
Confidence 4578889999996 55669999999874
No 422
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=45.70 E-value=3.7e+02 Score=30.98 Aligned_cols=17 Identities=18% Similarity=0.204 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001734 351 ISTLKQDLELAKRTHEL 367 (1019)
Q Consensus 351 ~~~Lk~ele~~k~~~e~ 367 (1019)
+..||.+|..+..+|.+
T Consensus 79 ~r~lk~~l~evEekyrk 95 (302)
T PF09738_consen 79 LRDLKDSLAEVEEKYRK 95 (302)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44566666666666554
No 423
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=45.64 E-value=15 Score=46.46 Aligned_cols=35 Identities=29% Similarity=0.417 Sum_probs=27.7
Q ss_pred HHHhchHHHHHHHH-cCcceeEEeecccCCCCceee
Q 001734 555 EVFLDTRPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 589 (1019)
Q Consensus 555 eVf~~~~pLV~svL-dG~N~~IfAYGQTGSGKTyTM 589 (1019)
-||.-+......++ .|.|-||+.-|.+|||||.|.
T Consensus 74 HifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T cd01383 74 HVYAIADTAYNEMMRDEVNQSIIISGESGAGKTETA 109 (677)
T ss_pred CHHHHHHHHHHHHHHcCCCceEEEecCCCCCcchHH
Confidence 47766555555544 599999999999999999986
No 424
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=45.60 E-value=3.2e+02 Score=30.10 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001734 382 ESQKKLQELERLLTVSKKKVEEL 404 (1019)
Q Consensus 382 ~le~~l~e~~~~l~~~~~~~~~l 404 (1019)
.|++.++-+..+..+++++..+|
T Consensus 181 ~LeE~~~~l~~ev~~L~~r~~EL 203 (290)
T COG4026 181 RLEEMLKKLPGEVYDLKKRWDEL 203 (290)
T ss_pred HHHHHHHhchhHHHHHHHHHHHh
Confidence 33444444444444444444333
No 425
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=45.46 E-value=6.4e+02 Score=30.63 Aligned_cols=329 Identities=13% Similarity=0.088 Sum_probs=0.0
Q ss_pred HHhhhhhHHHhhHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHhhhH--HHHHHHHHHHH-----------HHhhh
Q 001734 276 NFKNQNNLFRAREEKYKSRIRVLETLTVGTTEENQVVANQLERIKTEKTNI--AQKEKLEEQNA-----------LRLKK 342 (1019)
Q Consensus 276 ~~~~q~~~~~~~~~~~~~~~~~le~l~~~~~ee~~~~~~~l~~l~~e~~k~--eek~~~~e~~~-----------~~l~k 342 (1019)
|-+.-.++++..| +|...+..-+.+..+....+++.|+.+. ||.+++..++. .--.|
T Consensus 93 ~aK~vfel~r~qE----------~Trq~E~~~k~~~~eA~qa~~~~er~r~~~Ee~rk~lq~qaq~k~q~arYqD~lark 162 (630)
T KOG0742|consen 93 YAKDVFELARMQE----------QTRQAEQQAKTKEYEAAQAQLKSERIRVQAEERRKTLQEETQQKQQRARYQDKLARK 162 (630)
T ss_pred cHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhH
Q 001734 343 ENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLTVSKKKVEELESLSESKSQRWKRIEHSY 422 (1019)
Q Consensus 343 e~~~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le~~l~e~~~~l~~~~~~~~~le~~~~~~~~~~~~~~~~~ 422 (1019)
..+....--..+.+||-.+++..-.+..++.....+....+..+-.-.+.+++.-.-+++..-+....-...--......
T Consensus 163 r~~~e~e~qr~~n~ElvrmQEeS~irqE~aRraTeE~iqaqrr~tE~erae~EretiRvkA~Aeaegraheakl~edvnr 242 (630)
T KOG0742|consen 163 RYEDELEAQRRLNEELVRMQEESVIRQEQARRATEEQIQAQRRKTEMERAEAERETIRVKAKAEAEGRAHEAKLNEDVNR 242 (630)
T ss_pred HHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhcchhhhhhhHHHHH
Q ss_pred hhHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCEEEEeec
Q 001734 423 QSFMGCQLGVIQDLRVAFESTKHEVLETKKNYSKEFDCLGLNLKRLIDAAEKYHVILAENRRLYNEVQDLKGNIRVYCRI 502 (1019)
Q Consensus 423 ~~~l~~Q~~~l~el~~~~~~~k~ei~~~~~~~~~e~~~l~~~l~~l~~~~~~~~~~l~erR~L~N~vqelkGnIrV~~RV 502 (1019)
+.++..-...-+.--.++.++-.-|---.+.+..+-+.|-.-+-++...+......-.--+-.+.=|...-|
T Consensus 243 r~l~~~~n~eRekwl~aInTtf~higgG~r~~ltD~~Kli~tVgGlTaLAaGvYTtkeg~~V~w~yi~r~LG-------- 314 (630)
T KOG0742|consen 243 RQLRLKANEEREKWLEAINTTFTHIGGGLRAFLTDWNKLIATVGGLTALAAGVYTTKEGTLVTWRYIERRLG-------- 314 (630)
T ss_pred HHHHHHhhhHHHHHHHHHhhhHHHhhhHHHHHhhhhHhHHHHhhhHHHHHhhheeccccchhHHHHHHHHcC--------
Q ss_pred CCCCCCccCCCccEEEeCCCCeEEEeCCCCCCCCCceeeeeceeeCCCCChHHHHhc-hHHHHHHHHcCcceeEEeeccc
Q 001734 503 RPFLPGQSKKQTTIEYIGENGELVVSNPLKQGKDNHRLFKFNKVFGPEASQEEVFLD-TRPLIRSVLDGYNVCIFAYGQT 581 (1019)
Q Consensus 503 RP~~~~e~~~~~~v~~~~~~~~~~i~~p~~~~~~~~k~F~FD~VF~~~atQeeVf~~-~~pLV~svLdG~N~~IfAYGQT 581 (1019)
.|.+-.|...... .+++.-..+.-.-...........=.|+.|.-+.+--..|-.- ..--=...-++-=-.|+-||+.
T Consensus 315 qPSLiREsSrg~~-pw~gsls~~k~~i~~~~~~s~~gk~pl~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPP 393 (630)
T KOG0742|consen 315 QPSLIRESSRGRF-PWIGSLSALKHPIQGSRSASSRGKDPLEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPP 393 (630)
T ss_pred CchhhhhhccccC-CCcccHHHHhchhhhhHhhhhcCCCCcCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCC
Q ss_pred CCCCce--------------eeecCCCCCCCccchhHHHHHHHHHHHhhccCCceEEE
Q 001734 582 GSGKTY--------------TMSGPCISSTEDWGVNYRALNDLFEISESRKNSILYEV 625 (1019)
Q Consensus 582 GSGKTy--------------TM~G~~~~~~~~~GIipRal~~LF~~~~~~~~~~~~~V 625 (1019)
|+|||- .|.|.+...-...|+ -.++.||+.......+.-.-|
T Consensus 394 GTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qaV--TkiH~lFDWakkS~rGLllFI 449 (630)
T KOG0742|consen 394 GTGKTMFARELARHSGLDYAIMTGGDVAPLGAQAV--TKIHKLFDWAKKSRRGLLLFI 449 (630)
T ss_pred CCCchHHHHHHHhhcCCceehhcCCCccccchHHH--HHHHHHHHHHhhcccceEEEe
No 426
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=45.45 E-value=3.9e+02 Score=34.76 Aligned_cols=35 Identities=17% Similarity=0.413 Sum_probs=22.8
Q ss_pred hHHHHHHH-HcCcceeEEeecccCCCCceeeecCCCCCCCccchhHHHHHHHHH
Q 001734 560 TRPLIRSV-LDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALNDLFE 612 (1019)
Q Consensus 560 ~~pLV~sv-LdG~N~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~~LF~ 612 (1019)
+...|+.+ +.|+.+..+-.|- | .|++-+++.+.+.
T Consensus 721 l~~fl~~a~~~g~~~v~IIHGk----------G--------tG~Lr~~v~~~L~ 756 (782)
T PRK00409 721 LDKYLDDALLAGYGEVLIIHGK----------G--------TGKLRKGVQEFLK 756 (782)
T ss_pred HHHHHHHHHHcCCCEEEEEcCC----------C--------hhHHHHHHHHHHc
Confidence 34445444 4788888777763 3 2788888877765
No 427
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=45.44 E-value=8.6 Score=40.60 Aligned_cols=21 Identities=33% Similarity=0.352 Sum_probs=15.4
Q ss_pred CcceeEEeecccCCCCceeee
Q 001734 570 GYNVCIFAYGQTGSGKTYTMS 590 (1019)
Q Consensus 570 G~N~~IfAYGQTGSGKTyTM~ 590 (1019)
..-..||..||.|||||+.+.
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~ 33 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLAR 33 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHH
Confidence 345678999999999988764
No 428
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=45.23 E-value=12 Score=44.80 Aligned_cols=26 Identities=42% Similarity=0.631 Sum_probs=20.9
Q ss_pred HHHHHHHcCcceeEEeecccCCCCceee
Q 001734 562 PLIRSVLDGYNVCIFAYGQTGSGKTYTM 589 (1019)
Q Consensus 562 pLV~svLdG~N~~IfAYGQTGSGKTyTM 589 (1019)
..|..+++|.| |++-.+||||||.+.
T Consensus 30 ~ai~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 30 QAIPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 44667789988 577889999999874
No 429
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=45.13 E-value=8 Score=45.45 Aligned_cols=19 Identities=37% Similarity=0.366 Sum_probs=15.9
Q ss_pred eeEEeecccCCCCceeeec
Q 001734 573 VCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 573 ~~IfAYGQTGSGKTyTM~G 591 (1019)
..|.-+|+||+|||+|+..
T Consensus 138 ~ii~lvGptGvGKTTtiak 156 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAK 156 (374)
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 4566899999999999854
No 430
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.93 E-value=7.1e+02 Score=31.02 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=10.2
Q ss_pred hhhHHHhhhhhHHHhhHHHHHH
Q 001734 272 TQYQNFKNQNNLFRAREEKYKS 293 (1019)
Q Consensus 272 ~q~~~~~~q~~~~~~~~~~~~~ 293 (1019)
+.+|.+++.....+-..-+|++
T Consensus 57 aeyd~~R~Eldqtkeal~q~~s 78 (772)
T KOG0999|consen 57 AEYDLARTELDQTKEALGQYRS 78 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455544444444444444
No 431
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=44.83 E-value=5e+02 Score=29.21 Aligned_cols=11 Identities=18% Similarity=0.471 Sum_probs=5.6
Q ss_pred HHHHHHHHHHH
Q 001734 310 QVVANQLERIK 320 (1019)
Q Consensus 310 ~~~~~~l~~l~ 320 (1019)
.+++++|++++
T Consensus 48 aelesqL~q~e 58 (333)
T KOG1853|consen 48 AELESQLDQLE 58 (333)
T ss_pred HHHHHHHHHHH
Confidence 44555555543
No 432
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=44.81 E-value=5.9e+02 Score=30.07 Aligned_cols=35 Identities=11% Similarity=0.312 Sum_probs=15.5
Q ss_pred HHHHHHHhHHHHHHHHHhhHHHHHhhhhhHHHHHH
Q 001734 436 LRVAFESTKHEVLETKKNYSKEFDCLGLNLKRLID 470 (1019)
Q Consensus 436 l~~~~~~~k~ei~~~~~~~~~e~~~l~~~l~~l~~ 470 (1019)
+...++.++.-+..++..+.+-...+..+++.|..
T Consensus 348 l~~~l~~~~~~L~~ve~~~~~N~~~i~~n~~~le~ 382 (388)
T PF04912_consen 348 LQSQLKKWEELLNKVEEKFKENMETIEKNVKKLEE 382 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444443
No 433
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=44.81 E-value=12 Score=49.99 Aligned_cols=41 Identities=27% Similarity=0.379 Sum_probs=0.0
Q ss_pred HhchHHHHHHHHcCcceeEEeecccCCCCceeeecCCCCCCCccchhHHHHH
Q 001734 557 FLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPCISSTEDWGVNYRALN 608 (1019)
Q Consensus 557 f~~~~pLV~svLdG~N~~IfAYGQTGSGKTyTM~G~~~~~~~~~GIipRal~ 608 (1019)
+..+..+++.+-+|...+++. .+||||||+||.+ ++.+.+.
T Consensus 419 ~~AI~ai~~a~~~g~r~~Ll~-maTGSGKT~tai~----------li~~L~~ 459 (1123)
T PRK11448 419 EDAIQAVEKAIVEGQREILLA-MATGTGKTRTAIA----------LMYRLLK 459 (1123)
T ss_pred HHHHHHHHHHHHhccCCeEEE-eCCCCCHHHHHHH----------HHHHHHh
No 434
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=44.63 E-value=8.5e+02 Score=31.84 Aligned_cols=40 Identities=10% Similarity=0.170 Sum_probs=18.6
Q ss_pred HHHHHHHHHhcCCCCCCCCccHHHHHHHchhhHHHHHHHhh
Q 001734 33 STLVEWLNEMIPHIHLPFEASEEKLRACLVDGTVLCLVLNK 73 (1019)
Q Consensus 33 ~e~~~Wie~vlg~~~lp~~~s~edl~~~LrdGviLC~L~N~ 73 (1019)
..+..|+.-..=..++....+.+||+. ...-|+|..|-=-
T Consensus 293 fHAaAw~k~f~l~k~~~K~~Tqde~q~-~as~VlLaaLSIP 332 (988)
T KOG2072|consen 293 FHAAAWLKLFKLYKNMNKNLTQDELQR-MASRVLLAALSIP 332 (988)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHH-HHHHHHHHHhcCC
Confidence 355666654332123333444555543 3455555555433
No 435
>PRK10536 hypothetical protein; Provisional
Probab=44.52 E-value=13 Score=41.73 Aligned_cols=42 Identities=21% Similarity=0.373 Sum_probs=27.9
Q ss_pred eeeceeeCCCCChHHHHhchHHHHHHHHcCcceeEEeecccCCCCceeeec
Q 001734 541 FKFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 541 F~FD~VF~~~atQeeVf~~~~pLV~svLdG~N~~IfAYGQTGSGKTyTM~G 591 (1019)
|.|-.|-+-+..|..... .+.+ +.-|+..|++||||||...-
T Consensus 52 ~~~~~i~p~n~~Q~~~l~-------al~~--~~lV~i~G~aGTGKT~La~a 93 (262)
T PRK10536 52 RDTSPILARNEAQAHYLK-------AIES--KQLIFATGEAGCGKTWISAA 93 (262)
T ss_pred cCCccccCCCHHHHHHHH-------HHhc--CCeEEEECCCCCCHHHHHHH
Confidence 556666666666654433 2333 34889999999999998643
No 436
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=44.43 E-value=8e+02 Score=31.47 Aligned_cols=44 Identities=27% Similarity=0.280 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001734 353 TLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLTV 396 (1019)
Q Consensus 353 ~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le~~l~e~~~~l~~ 396 (1019)
..++||+.+.+.|+.+...|...-...-..|..+..+++..|..
T Consensus 137 ~~q~ELee~q~~Hqeql~~Lt~aHq~~l~sL~~k~~~Le~~L~~ 180 (739)
T PF07111_consen 137 GSQRELEEAQRLHQEQLSSLTQAHQEALASLTSKAEELEKSLES 180 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777776666655554444444444444444433
No 437
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=44.26 E-value=16 Score=46.44 Aligned_cols=36 Identities=31% Similarity=0.454 Sum_probs=26.9
Q ss_pred HHHHhchHHHHHHHH-cCcceeEEeecccCCCCceee
Q 001734 554 EEVFLDTRPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 589 (1019)
Q Consensus 554 eeVf~~~~pLV~svL-dG~N~~IfAYGQTGSGKTyTM 589 (1019)
--||.-+......++ .|.|-||+.-|.+|||||.|.
T Consensus 75 PHiy~iA~~Ay~~m~~~~~~QsIiisGESGAGKTet~ 111 (692)
T cd01385 75 PHIFAIADVAYYNMLRKKVNQCIVISGESGSGKTEST 111 (692)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 346765544444433 689999999999999999986
No 438
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=44.23 E-value=15 Score=46.58 Aligned_cols=36 Identities=33% Similarity=0.433 Sum_probs=27.4
Q ss_pred HHHHhchHHHHHHHH-cCcceeEEeecccCCCCceee
Q 001734 554 EEVFLDTRPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 589 (1019)
Q Consensus 554 eeVf~~~~pLV~svL-dG~N~~IfAYGQTGSGKTyTM 589 (1019)
--||.-+......++ .|.|-||+.-|.+|||||.|.
T Consensus 73 PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T smart00242 73 PHVFAIADNAYRNMLNDKENQSIIISGESGAGKTENT 109 (677)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEecCCCCcchHHH
Confidence 447766544444433 689999999999999999986
No 439
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=44.14 E-value=13 Score=43.40 Aligned_cols=79 Identities=24% Similarity=0.392 Sum_probs=44.6
Q ss_pred eeceeeCCCCChHHHHhch-HHHHHH-HH--cCcc--eeEEeecccCCCCceee--------------ecCCCCCCCccc
Q 001734 542 KFNKVFGPEASQEEVFLDT-RPLIRS-VL--DGYN--VCIFAYGQTGSGKTYTM--------------SGPCISSTEDWG 601 (1019)
Q Consensus 542 ~FD~VF~~~atQeeVf~~~-~pLV~s-vL--dG~N--~~IfAYGQTGSGKTyTM--------------~G~~~~~~~~~G 601 (1019)
+|+-|=+-+..=++|.+.+ -||.+- .+ =|+. --|+-||+.|+|||-.- .|+. --..--|
T Consensus 149 tY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSE-lVqKYiG 227 (406)
T COG1222 149 TYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSE-LVQKYIG 227 (406)
T ss_pred ChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHH-HHHHHhc
Confidence 3444444333345555544 455432 23 2543 34899999999998532 1210 0001125
Q ss_pred hhHHHHHHHHHHHhhccCCc
Q 001734 602 VNYRALNDLFEISESRKNSI 621 (1019)
Q Consensus 602 IipRal~~LF~~~~~~~~~~ 621 (1019)
==+|.+++||.....+...+
T Consensus 228 EGaRlVRelF~lArekaPsI 247 (406)
T COG1222 228 EGARLVRELFELAREKAPSI 247 (406)
T ss_pred cchHHHHHHHHHHhhcCCeE
Confidence 55899999999888766554
No 440
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.05 E-value=3.6e+02 Score=33.04 Aligned_cols=16 Identities=25% Similarity=0.225 Sum_probs=11.3
Q ss_pred HHHHHHhhhhhHHHhh
Q 001734 264 PLIERRTATQYQNFKN 279 (1019)
Q Consensus 264 ~e~e~~is~q~~~~~~ 279 (1019)
+++-+|+-.|-++.+.
T Consensus 337 ~dL~~R~K~Q~q~~~~ 352 (508)
T KOG3091|consen 337 EDLRQRLKVQDQEVKQ 352 (508)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5677777777776655
No 441
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=43.97 E-value=8.4 Score=42.52 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=15.4
Q ss_pred eeEEeecccCCCCceeeec
Q 001734 573 VCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 573 ~~IfAYGQTGSGKTyTM~G 591 (1019)
..++-||++|+|||++...
T Consensus 43 ~~vll~GppGtGKTtlA~~ 61 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARI 61 (261)
T ss_pred ceEEEEcCCCCCHHHHHHH
Confidence 4467899999999998743
No 442
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=43.75 E-value=17 Score=46.08 Aligned_cols=35 Identities=31% Similarity=0.521 Sum_probs=26.6
Q ss_pred HHHhchHHHHHHHH-cCcceeEEeecccCCCCceee
Q 001734 555 EVFLDTRPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 589 (1019)
Q Consensus 555 eVf~~~~pLV~svL-dG~N~~IfAYGQTGSGKTyTM 589 (1019)
-||.-+......++ .|.|-||+.-|.+|||||.|.
T Consensus 70 HifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 105 (674)
T cd01384 70 HVFAIADAAYRAMINEGKSQSILVSGESGAGKTETT 105 (674)
T ss_pred CHHHHHHHHHHHHHHcCCCceEEEECCCCCCchhHH
Confidence 36765544444433 689999999999999999986
No 443
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=43.67 E-value=6.6e+02 Score=30.25 Aligned_cols=6 Identities=17% Similarity=0.235 Sum_probs=2.9
Q ss_pred hccCCE
Q 001734 491 DLKGNI 496 (1019)
Q Consensus 491 elkGnI 496 (1019)
...|-|
T Consensus 322 P~dG~V 327 (457)
T TIGR01000 322 PEDGVL 327 (457)
T ss_pred CCCeEE
Confidence 445644
No 444
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=43.55 E-value=16 Score=46.33 Aligned_cols=36 Identities=33% Similarity=0.442 Sum_probs=28.2
Q ss_pred HHHHhchHHHHHHHH-cCcceeEEeecccCCCCceee
Q 001734 554 EEVFLDTRPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 589 (1019)
Q Consensus 554 eeVf~~~~pLV~svL-dG~N~~IfAYGQTGSGKTyTM 589 (1019)
--||.-+.....+++ .|-|-||+.-|.+|||||.|.
T Consensus 67 PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (679)
T cd00124 67 PHVFAIADRAYRNMLRDRRNQSIIISGESGAGKTENT 103 (679)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 347766555555554 589999999999999999986
No 445
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=43.50 E-value=17 Score=45.92 Aligned_cols=35 Identities=26% Similarity=0.460 Sum_probs=26.7
Q ss_pred HHHhchHHHHHHHH-cCcceeEEeecccCCCCceee
Q 001734 555 EVFLDTRPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 589 (1019)
Q Consensus 555 eVf~~~~pLV~svL-dG~N~~IfAYGQTGSGKTyTM 589 (1019)
-||.-+......++ .|.|-||+.-|.+|||||.|.
T Consensus 68 HifavA~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 103 (671)
T cd01381 68 HIFAISDNAYTNMQREKKNQCIIISGESGAGKTEST 103 (671)
T ss_pred CHHHHHHHHHHHHHHcCCCceEEEEcCCCCCeehHH
Confidence 46665544444443 689999999999999999986
No 446
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=43.31 E-value=4.4e+02 Score=28.16 Aligned_cols=123 Identities=20% Similarity=0.231 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHhHhhhhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHhhHHHHHHHHHHHhhhhccchhh
Q 001734 229 TKSLFNIVNRILDECVERKNGDAPHRVACLLRKVVPLIERRTATQYQNFKNQNNLFRAREEKYKSRIRVLETLTVGTTEE 308 (1019)
Q Consensus 229 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~l~kvv~e~e~~is~q~~~~~~q~~~~~~~~~~~~~~~~~le~l~~~~~ee 308 (1019)
++-+.-|++.|=-+|.||-- ||.+|-.|+ ..++.+-...|.|.+..--.-+...+..
T Consensus 65 ~~~F~ELIRQVTi~C~ERGl---------LL~rvrde~--------------~~~l~~y~~l~~s~~~f~~rk~l~~e~~ 121 (189)
T PF10211_consen 65 SQCFDELIRQVTIDCPERGL---------LLLRVRDEY--------------RMTLDAYQTLYESSIAFGMRKALQAEQG 121 (189)
T ss_pred HHHHHHHHHHHHhCcHHHhH---------HHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001734 309 NQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQ 388 (1019)
Q Consensus 309 ~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~l~ke~~~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le~~l~ 388 (1019)
...+..++..|+.+...++. ++..|+..++.+.+..+......+....+....|++..+
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~---------------------~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ 180 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEK---------------------QVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQ 180 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q 001734 389 ELERLLT 395 (1019)
Q Consensus 389 e~~~~l~ 395 (1019)
.++..++
T Consensus 181 ql~~~l~ 187 (189)
T PF10211_consen 181 QLKAQLE 187 (189)
T ss_pred HHHHHHh
No 447
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=43.28 E-value=4.9e+02 Score=28.71 Aligned_cols=12 Identities=25% Similarity=0.310 Sum_probs=6.9
Q ss_pred hhhhccCCEEEE
Q 001734 488 EVQDLKGNIRVY 499 (1019)
Q Consensus 488 ~vqelkGnIrV~ 499 (1019)
.-.+.-+.|-||
T Consensus 160 ~E~~yg~~i~~~ 171 (251)
T PF11932_consen 160 IEMEYGRTIEVY 171 (251)
T ss_pred HHHHhCCceeEE
Confidence 333555677776
No 448
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=43.24 E-value=5e+02 Score=28.78 Aligned_cols=13 Identities=15% Similarity=0.317 Sum_probs=6.0
Q ss_pred HHHHHHHHHhHHH
Q 001734 434 QDLRVAFESTKHE 446 (1019)
Q Consensus 434 ~el~~~~~~~k~e 446 (1019)
.-|+..+..++.+
T Consensus 91 ~~Lk~~in~~R~e 103 (230)
T PF10146_consen 91 KPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 449
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=43.02 E-value=7.7e+02 Score=30.89 Aligned_cols=148 Identities=15% Similarity=0.177 Sum_probs=0.0
Q ss_pred CCCcchHHHHHHHHHhHhhhhcCCCCc---hHHHHHHHHHHHHHHHHhhhhhHHHhhhhhHHHhhHHHHHHHHHHHhhhh
Q 001734 226 NASTKSLFNIVNRILDECVERKNGDAP---HRVACLLRKVVPLIERRTATQYQNFKNQNNLFRAREEKYKSRIRVLETLT 302 (1019)
Q Consensus 226 ~~~~~~l~~~~~~~l~~~~~~~~~~~~---~~~~~~l~kvv~e~e~~is~q~~~~~~q~~~~~~~~~~~~~~~~~le~l~ 302 (1019)
...+-+++..+...+... ..-.+++ .-+..+|....-++ ..++.+..+.-..++.--.+-+...+|+..|..|+
T Consensus 237 e~~~~~~~~~l~~a~~~l--~~~~~~d~~l~~~~~~l~ea~~~l-~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~ 313 (557)
T COG0497 237 EDDTVSALSLLGRALEAL--EDLSEYDGKLSELAELLEEALYEL-EEASEELRAYLDELEFDPNRLEEVEERLFALKSLA 313 (557)
T ss_pred CCCchhHHHHHHHHHHHH--HHhhccChhHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q ss_pred ccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001734 303 VGTTEENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIE 382 (1019)
Q Consensus 303 ~~~~ee~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~l~ke~~~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~ 382 (1019)
......++.+....++++.|.+.++. .+....+|..++..++..|.+.+..|-...++.=.+
T Consensus 314 RKY~~~~~~l~~~~~~~~~el~~L~~------------------~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~ 375 (557)
T COG0497 314 RKYGVTIEDLLEYLDKIKEELAQLDN------------------SEESLEALEKEVKKLKAELLEAAEALSAIRKKAAKE 375 (557)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhhh------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH
Q 001734 383 SQKKLQELERLL 394 (1019)
Q Consensus 383 le~~l~e~~~~l 394 (1019)
|++.+...=..|
T Consensus 376 L~~~v~~eL~~L 387 (557)
T COG0497 376 LEKEVTAELKAL 387 (557)
T ss_pred HHHHHHHHHHhc
No 450
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=42.98 E-value=6.2e+02 Score=32.41 Aligned_cols=27 Identities=4% Similarity=-0.312 Sum_probs=16.8
Q ss_pred HHHHchhhHHHHHHHhhhcCCCccCCC
Q 001734 57 LRACLVDGTVLCLVLNKLSPDSVEMGA 83 (1019)
Q Consensus 57 l~~~LrdGviLC~L~N~l~Pgsv~k~~ 83 (1019)
+...++-|...|.-.+..+|+..++..
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (670)
T KOG0239|consen 22 SNPKKRFELARVYSPSVGQPSLFSDVQ 48 (670)
T ss_pred cccccccCccccccccccccccCCccc
Confidence 455566677777777766666554443
No 451
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=42.78 E-value=17 Score=46.08 Aligned_cols=36 Identities=28% Similarity=0.441 Sum_probs=27.7
Q ss_pred HHHHhchHHHHHHHH-cCcceeEEeecccCCCCceee
Q 001734 554 EEVFLDTRPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 589 (1019)
Q Consensus 554 eeVf~~~~pLV~svL-dG~N~~IfAYGQTGSGKTyTM 589 (1019)
--||.-+......++ .|.|-||+.-|.+|||||.|.
T Consensus 68 PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 104 (677)
T cd01387 68 PHLFAIANLAFAKMLDAKQNQCVIISGESGSGKTEAT 104 (677)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEEcCCCCCeehHH
Confidence 347766544444444 699999999999999999986
No 452
>PF09321 DUF1978: Domain of unknown function (DUF1978); InterPro: IPR015400 This domain is found in various hypothetical proteins produced by the bacterium Chlamydia pneumoniae. Their exact function has not, as yet, been identified. This entry includes the IncA proteins
Probab=42.75 E-value=4.9e+02 Score=29.09 Aligned_cols=35 Identities=20% Similarity=0.439 Sum_probs=21.6
Q ss_pred hhhHHHHHHHHHhhhhccCCCCccccccccccccc
Q 001734 117 MAPVLQCLRSLRASFSFCDEEDTIQDHYRKRWNVS 151 (1019)
Q Consensus 117 ~~~Vv~cL~aL~~~~~~k~~g~~~~~~~~~~~~~~ 151 (1019)
+.-+..|+.-|+.-+=|-.-.+.+-....+.|+..
T Consensus 13 f~e~~~~w~~~~k~~FWv~Ed~~Idit~~~~W~~~ 47 (241)
T PF09321_consen 13 FREILERWEDFRKTFFWVKEDGVIDITDPGSWDLS 47 (241)
T ss_pred HHHHHHHHHHHHHHheeeccCCccccCCccccccc
Confidence 45567788888877777765544433444666543
No 453
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=42.73 E-value=5.2e+02 Score=28.79 Aligned_cols=8 Identities=25% Similarity=0.277 Sum_probs=4.0
Q ss_pred HHHHHHhh
Q 001734 264 PLIERRTA 271 (1019)
Q Consensus 264 ~e~e~~is 271 (1019)
+|+|.||-
T Consensus 8 ~Ele~rL~ 15 (246)
T PF00769_consen 8 QELEERLR 15 (246)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 35555543
No 454
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=42.48 E-value=2e+02 Score=25.48 Aligned_cols=44 Identities=30% Similarity=0.408 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001734 353 TLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLTVSKKKVEEL 404 (1019)
Q Consensus 353 ~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le~~l~e~~~~l~~~~~~~~~l 404 (1019)
.+.+||..++..+-.....|+. -+.+.+++..++..++++++++
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqe--------aE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQE--------AEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555544433333221 2344555555555555555443
No 455
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=42.42 E-value=18 Score=45.73 Aligned_cols=35 Identities=26% Similarity=0.476 Sum_probs=27.1
Q ss_pred HHHhchHHHHHHHH-cCcceeEEeecccCCCCceee
Q 001734 555 EVFLDTRPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 589 (1019)
Q Consensus 555 eVf~~~~pLV~svL-dG~N~~IfAYGQTGSGKTyTM 589 (1019)
-||.-+......++ .|.|-||+.-|.+|||||.|.
T Consensus 68 HifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (674)
T cd01378 68 HIYALADNAYRSMKSENENQCVIISGESGAGKTEAA 103 (674)
T ss_pred CHHHHHHHHHHHHHHcCCCceEEEEcCCCCCcchHH
Confidence 37765544444444 689999999999999999986
No 456
>PRK00106 hypothetical protein; Provisional
Probab=42.41 E-value=7.8e+02 Score=30.73 Aligned_cols=13 Identities=31% Similarity=0.386 Sum_probs=7.2
Q ss_pred hhhhhhhhhhccC
Q 001734 482 NRRLYNEVQDLKG 494 (1019)
Q Consensus 482 rR~L~N~vqelkG 494 (1019)
|+-+-..+|..-+
T Consensus 206 ~~ii~~aiqr~a~ 218 (535)
T PRK00106 206 KDLLAQAMQRLAG 218 (535)
T ss_pred HHHHHHHHHHhcc
Confidence 4445566666554
No 457
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=42.20 E-value=11 Score=43.47 Aligned_cols=17 Identities=47% Similarity=0.604 Sum_probs=13.9
Q ss_pred ceeEEeecccCCCCcee
Q 001734 572 NVCIFAYGQTGSGKTYT 588 (1019)
Q Consensus 572 N~~IfAYGQTGSGKTyT 588 (1019)
.+-|+..|+||||||+-
T Consensus 97 KSNILLiGPTGsGKTlL 113 (408)
T COG1219 97 KSNILLIGPTGSGKTLL 113 (408)
T ss_pred eccEEEECCCCCcHHHH
Confidence 34578899999999964
No 458
>PRK10869 recombination and repair protein; Provisional
Probab=42.16 E-value=7.8e+02 Score=30.68 Aligned_cols=22 Identities=9% Similarity=-0.007 Sum_probs=15.1
Q ss_pred CCCccchhHHHHHHHHHHHhhc
Q 001734 596 STEDWGVNYRALNDLFEISESR 617 (1019)
Q Consensus 596 ~~~~~GIipRal~~LF~~~~~~ 617 (1019)
+..+.||=++....+.+.+...
T Consensus 459 DEpd~gld~~~~~~v~~~l~~l 480 (553)
T PRK10869 459 DEVDVGISGPTAAVVGKLLRQL 480 (553)
T ss_pred ECCCCCCCHHHHHHHHHHHHHH
Confidence 3456688888887777766544
No 459
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=41.81 E-value=8.7e+02 Score=31.15 Aligned_cols=16 Identities=13% Similarity=0.150 Sum_probs=11.8
Q ss_pred HHHHHHHchhhHHHHH
Q 001734 54 EEKLRACLVDGTVLCL 69 (1019)
Q Consensus 54 ~edl~~~LrdGviLC~ 69 (1019)
+.+|....+|-|.-|.
T Consensus 504 eq~~~~~~~d~i~a~~ 519 (1187)
T KOG0579|consen 504 EQLFEHSIRDTIMASS 519 (1187)
T ss_pred hHHhhhhhhhhhhccc
Confidence 4467788888888773
No 460
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=41.27 E-value=9.2 Score=46.34 Aligned_cols=51 Identities=24% Similarity=0.320 Sum_probs=29.6
Q ss_pred eeeeceeeCCCCChHHHHhchHHHHHH-HHc--C--cceeEEeecccCCCCceeee
Q 001734 540 LFKFNKVFGPEASQEEVFLDTRPLIRS-VLD--G--YNVCIFAYGQTGSGKTYTMS 590 (1019)
Q Consensus 540 ~F~FD~VF~~~atQeeVf~~~~pLV~s-vLd--G--~N~~IfAYGQTGSGKTyTM~ 590 (1019)
..+||.|.+.+...+++.+.+..+-.. .+. | ..-.|+-||++|+|||+..-
T Consensus 51 ~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~ 106 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAK 106 (495)
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHH
Confidence 467888877655554444322211100 111 2 23358889999999999863
No 461
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=41.08 E-value=1.7e+02 Score=37.99 Aligned_cols=18 Identities=11% Similarity=-0.055 Sum_probs=11.8
Q ss_pred hhhHHHHHHHHHhhhhcc
Q 001734 117 MAPVLQCLRSLRASFSFC 134 (1019)
Q Consensus 117 ~~~Vv~cL~aL~~~~~~k 134 (1019)
.-.-++|+.|+..|+...
T Consensus 266 ~l~~lD~l~a~a~~a~~~ 283 (771)
T TIGR01069 266 EFDFLDSLQARARYAKAV 283 (771)
T ss_pred HHHHHHHHHHHHHHHHHC
Confidence 334466888887777654
No 462
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=41.06 E-value=2.1e+02 Score=34.89 Aligned_cols=12 Identities=25% Similarity=0.451 Sum_probs=8.0
Q ss_pred eeeeeceeeCCC
Q 001734 539 RLFKFNKVFGPE 550 (1019)
Q Consensus 539 k~F~FD~VF~~~ 550 (1019)
..|.|-.-|++.
T Consensus 194 ~~~~fpt~f~~~ 205 (472)
T TIGR03752 194 SKFSFPTSFDNA 205 (472)
T ss_pred CcccCccccccc
Confidence 457877777654
No 463
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=40.86 E-value=9.1 Score=48.62 Aligned_cols=14 Identities=14% Similarity=0.344 Sum_probs=8.9
Q ss_pred HHHHHHHHHHhcCC
Q 001734 32 LSTLVEWLNEMIPH 45 (1019)
Q Consensus 32 ~~e~~~Wie~vlg~ 45 (1019)
-.-+..++..++|.
T Consensus 76 ~~~i~~yy~e~L~~ 89 (713)
T PF05622_consen 76 LRNIKSYYQEELGQ 89 (713)
T ss_dssp HHHHHHHHHTTT--
T ss_pred HHHHHHHHHHHcCC
Confidence 34577888888883
No 464
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=40.82 E-value=17 Score=43.27 Aligned_cols=18 Identities=44% Similarity=0.540 Sum_probs=16.0
Q ss_pred eeEEeecccCCCCceeee
Q 001734 573 VCIFAYGQTGSGKTYTMS 590 (1019)
Q Consensus 573 ~~IfAYGQTGSGKTyTM~ 590 (1019)
..|+-.|+||+|||+|+.
T Consensus 242 ~vI~LVGptGvGKTTTia 259 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLA 259 (436)
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 568899999999999985
No 465
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=40.67 E-value=13 Score=41.66 Aligned_cols=30 Identities=23% Similarity=0.380 Sum_probs=21.9
Q ss_pred HHHHHHHHcCcceeEEeecccCCCCceeeec
Q 001734 561 RPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 561 ~pLV~svLdG~N~~IfAYGQTGSGKTyTM~G 591 (1019)
.-+++..+.. +-.++-+|++|||||-++..
T Consensus 23 ~~ll~~l~~~-~~pvLl~G~~GtGKT~li~~ 52 (272)
T PF12775_consen 23 SYLLDLLLSN-GRPVLLVGPSGTGKTSLIQN 52 (272)
T ss_dssp HHHHHHHHHC-TEEEEEESSTTSSHHHHHHH
T ss_pred HHHHHHHHHc-CCcEEEECCCCCchhHHHHh
Confidence 3456665543 56678999999999988753
No 466
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=40.52 E-value=19 Score=45.73 Aligned_cols=36 Identities=33% Similarity=0.452 Sum_probs=27.6
Q ss_pred HHHHhchHHHHHHHH-cCcceeEEeecccCCCCceee
Q 001734 554 EEVFLDTRPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 589 (1019)
Q Consensus 554 eeVf~~~~pLV~svL-dG~N~~IfAYGQTGSGKTyTM 589 (1019)
--||.-+......++ .|.|-||+.-|.+|||||.|.
T Consensus 72 PHiyaiA~~Ay~~m~~~~~~QsIiiSGESGAGKTes~ 108 (693)
T cd01377 72 PHIFAIADNAYRSMLQDRENQSILITGESGAGKTENT 108 (693)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 447766544444444 699999999999999999885
No 467
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=40.27 E-value=5.2e+02 Score=28.10 Aligned_cols=29 Identities=7% Similarity=0.087 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 001734 309 NQVVANQLERIKTEKTNIAQKEKLEEQNA 337 (1019)
Q Consensus 309 ~~~~~~~l~~l~~e~~k~eek~~~~e~~~ 337 (1019)
+..+...++.|+.+...|+|+.+..-+..
T Consensus 6 va~lnrri~~leeele~aqErl~~a~~KL 34 (205)
T KOG1003|consen 6 VAALNRRIQLLEEELDRAQERLATALQKL 34 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555556666666655433333
No 468
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=40.05 E-value=7.5e+02 Score=29.90 Aligned_cols=40 Identities=13% Similarity=-0.009 Sum_probs=19.2
Q ss_pred HhHhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhHHHHH
Q 001734 420 HSYQSFMGCQLGVIQDLRVAFESTKHEVLETKKNYSKEFD 459 (1019)
Q Consensus 420 ~~~~~~l~~Q~~~l~el~~~~~~~k~ei~~~~~~~~~e~~ 459 (1019)
.+++...+.+....|.+...++.++-.+...|+.|.....
T Consensus 321 arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d 360 (502)
T KOG0982|consen 321 ARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMND 360 (502)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444455555555555555444333
No 469
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=40.05 E-value=24 Score=42.35 Aligned_cols=20 Identities=40% Similarity=0.441 Sum_probs=16.8
Q ss_pred ceeEEeecccCCCCceeeec
Q 001734 572 NVCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 572 N~~IfAYGQTGSGKTyTM~G 591 (1019)
-..|+-+|.+|+|||+|..-
T Consensus 95 p~vI~lvG~~GsGKTTtaak 114 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAK 114 (437)
T ss_pred CeEEEEECCCCCcHHHHHHH
Confidence 45788899999999999753
No 470
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=40.05 E-value=16 Score=41.82 Aligned_cols=39 Identities=26% Similarity=0.292 Sum_probs=23.7
Q ss_pred ChHHHHhchHHHHHHHHc--CcceeEEeecccCCCCceeee
Q 001734 552 SQEEVFLDTRPLIRSVLD--GYNVCIFAYGQTGSGKTYTMS 590 (1019)
Q Consensus 552 tQeeVf~~~~pLV~svLd--G~N~~IfAYGQTGSGKTyTM~ 590 (1019)
.|+++-.....++..... +....++-||++|+|||+...
T Consensus 29 G~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 29 GQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHH
Confidence 344444444444444332 222357789999999999875
No 471
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=40.04 E-value=1.3e+02 Score=31.93 Aligned_cols=7 Identities=29% Similarity=0.814 Sum_probs=2.8
Q ss_pred hhhhhHH
Q 001734 278 KNQNNLF 284 (1019)
Q Consensus 278 ~~q~~~~ 284 (1019)
++|.|++
T Consensus 99 raQRN~Y 105 (192)
T PF05529_consen 99 RAQRNMY 105 (192)
T ss_pred HHHHhHH
Confidence 3344333
No 472
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=40.00 E-value=15 Score=46.94 Aligned_cols=46 Identities=24% Similarity=0.354 Sum_probs=27.2
Q ss_pred eeceeeCCCCChHHHHhchHHHHHHHHcCcceeEEeecccCCCCceeeec
Q 001734 542 KFNKVFGPEASQEEVFLDTRPLIRSVLDGYNVCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 542 ~FD~VF~~~atQeeVf~~~~pLV~svLdG~N~~IfAYGQTGSGKTyTM~G 591 (1019)
+||.+++ |+.+-.....+...+-.|--..++-||++|+|||++...
T Consensus 26 tldd~vG----Qe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~a 71 (725)
T PRK13341 26 TLEEFVG----QDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARI 71 (725)
T ss_pred cHHHhcC----cHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHH
Confidence 4555543 444443323333333344445678899999999988753
No 473
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=39.77 E-value=9e+02 Score=31.35 Aligned_cols=141 Identities=18% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhHHHhhhhhHHHhhHHHHHHHHHHHhhhhccchhhHHHHHHHHHH-HH----HHhhhHHHHHHH----H
Q 001734 263 VPLIERRTATQYQNFKNQNNLFRAREEKYKSRIRVLETLTVGTTEENQVVANQLER-IK----TEKTNIAQKEKL----E 333 (1019)
Q Consensus 263 v~e~e~~is~q~~~~~~q~~~~~~~~~~~~~~~~~le~l~~~~~ee~~~~~~~l~~-l~----~e~~k~eek~~~----~ 333 (1019)
+.||=.|+-.-.+++..+-+-.-...++.-+.|+.-.......+.+...+.+..+. ++ .|++.+++.+++ +
T Consensus 852 ~~ei~s~lke~r~e~~~~~~~~~~~id~lv~~IK~~~~tq~~~~~~~d~~~~~~e~~~~~l~sk~~q~~~e~er~rk~qE 931 (1259)
T KOG0163|consen 852 TIEILSRLKEGREEIISGANSTYRQIDDLVKKIKMPRITQREMNSEYDVAVKNYEKLVKRLDSKEQQQIEELERLRKIQE 931 (1259)
T ss_pred HHHHHHHHhcchHHHHhhhhhHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhhccc----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001734 334 EQNALRLKKEND----DRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLTVSKKKVEE 403 (1019)
Q Consensus 334 e~~~~~l~ke~~----~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le~~l~e~~~~l~~~~~~~~~ 403 (1019)
.-++.|-.+|-+ ....|-..++.|++.-++.-|++....+.....+..+++.++.....+-.+.+++++.
T Consensus 932 ~~E~ER~rrEaeek~rre~ee~k~~k~e~e~kRK~eEeqr~~qee~e~~l~~e~q~qla~e~eee~k~q~~~Eq 1005 (1259)
T KOG0163|consen 932 LAEAERKRREAEEKRRREEEEKKRAKAEMETKRKAEEEQRKAQEEEERRLALELQEQLAKEAEEEAKRQNQLEQ 1005 (1259)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
No 474
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=39.77 E-value=20 Score=45.49 Aligned_cols=35 Identities=26% Similarity=0.422 Sum_probs=26.9
Q ss_pred HHHhchHHHHHHHH-cCcceeEEeecccCCCCceee
Q 001734 555 EVFLDTRPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 589 (1019)
Q Consensus 555 eVf~~~~pLV~svL-dG~N~~IfAYGQTGSGKTyTM 589 (1019)
-||.-+......++ .|.|-||+.-|.+|||||.|.
T Consensus 68 HifaiA~~Ay~~m~~~~~~QsIiiSGESGaGKTes~ 103 (691)
T cd01380 68 HIFAIAEEAYKQMTRDEKNQSIIVSGESGAGKTVSA 103 (691)
T ss_pred CHHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 36765544444444 799999999999999999886
No 475
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=39.70 E-value=17 Score=43.66 Aligned_cols=27 Identities=33% Similarity=0.491 Sum_probs=20.7
Q ss_pred HHHHHHHcCcceeEEeecccCCCCceeee
Q 001734 562 PLIRSVLDGYNVCIFAYGQTGSGKTYTMS 590 (1019)
Q Consensus 562 pLV~svLdG~N~~IfAYGQTGSGKTyTM~ 590 (1019)
..|..++.|.++ ++..+||||||.+..
T Consensus 18 ~ai~~~l~g~dv--lv~apTGsGKTl~y~ 44 (470)
T TIGR00614 18 EVINAVLLGRDC--FVVMPTGGGKSLCYQ 44 (470)
T ss_pred HHHHHHHcCCCE--EEEcCCCCcHhHHHH
Confidence 456778899975 556799999998653
No 476
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=39.67 E-value=20 Score=45.78 Aligned_cols=35 Identities=26% Similarity=0.313 Sum_probs=26.9
Q ss_pred HHHhchHHHHHHHH-cCcceeEEeecccCCCCceee
Q 001734 555 EVFLDTRPLIRSVL-DGYNVCIFAYGQTGSGKTYTM 589 (1019)
Q Consensus 555 eVf~~~~pLV~svL-dG~N~~IfAYGQTGSGKTyTM 589 (1019)
-||.-+......++ .|.|-||+.-|.+|||||.|.
T Consensus 73 HifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 108 (717)
T cd01382 73 HVFAIADKAYRDMKVLKMSQSIIVSGESGAGKTENT 108 (717)
T ss_pred cHHHHHHHHHHHHHhcCCCCeEEEecCCCCChhHHH
Confidence 36765544444443 689999999999999999986
No 477
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=39.59 E-value=1.8e+02 Score=26.72 Aligned_cols=27 Identities=33% Similarity=0.384 Sum_probs=18.9
Q ss_pred HHHHHHhhhcccchhHHHHHHHHHHHH
Q 001734 334 EQNALRLKKENDDRDIEISTLKQDLEL 360 (1019)
Q Consensus 334 e~~~~~l~ke~~~~~~e~~~Lk~ele~ 360 (1019)
++.+.+|.||+=+....|--|.+.|..
T Consensus 6 e~~i~~L~KENF~LKLrI~fLee~l~~ 32 (75)
T PF07989_consen 6 EEQIDKLKKENFNLKLRIYFLEERLQK 32 (75)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 445667777777777777777777663
No 478
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.58 E-value=5.3e+02 Score=28.02 Aligned_cols=47 Identities=23% Similarity=0.402 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhH----HHHHhhhhhHHHHHHHHHHHHHHH
Q 001734 433 IQDLRVAFESTKHEVLETKKNYS----KEFDCLGLNLKRLIDAAEKYHVIL 479 (1019)
Q Consensus 433 l~el~~~~~~~k~ei~~~~~~~~----~e~~~l~~~l~~l~~~~~~~~~~l 479 (1019)
++....++..+|....+++..|. +.+..|.-.+..+.+.+...+.+|
T Consensus 99 LKdtq~Tv~AmK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~L 149 (218)
T KOG1655|consen 99 LKDTQATVAAMKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVL 149 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666667777777777776664 456666667777777776666665
No 479
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=39.46 E-value=5.6e+02 Score=28.27 Aligned_cols=28 Identities=7% Similarity=0.101 Sum_probs=12.5
Q ss_pred HhhhHHHHHHHHHHHHHHhhhcccchhH
Q 001734 322 EKTNIAQKEKLEEQNALRLKKENDDRDI 349 (1019)
Q Consensus 322 e~~k~eek~~~~e~~~~~l~ke~~~~~~ 349 (1019)
...+|.+++....+++..+.++.+....
T Consensus 43 ~id~~~~e~~~L~~e~~~l~~e~e~L~~ 70 (251)
T PF11932_consen 43 RIDQWDDEKQELLAEYRQLEREIENLEV 70 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555554444444444444443333
No 480
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=39.35 E-value=4.9e+02 Score=28.66 Aligned_cols=115 Identities=12% Similarity=0.136 Sum_probs=0.0
Q ss_pred hHHHHHHHH--------HHHHHHHHhhhhhHHHhhhhhHHHhhHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHhh
Q 001734 253 HRVACLLRK--------VVPLIERRTATQYQNFKNQNNLFRAREEKYKSRIRVLETLTVGTTEENQVVANQLERIKTEKT 324 (1019)
Q Consensus 253 ~~~~~~l~k--------vv~e~e~~is~q~~~~~~q~~~~~~~~~~~~~~~~~le~l~~~~~ee~~~~~~~l~~l~~e~~ 324 (1019)
|..+.+++. .+-=|-=.|-.-+-.++.+-.+... |++.+....++........ +..+...++++..
T Consensus 88 ~~~~~l~raqrn~YisGf~LFL~lvI~R~~~ll~~l~~l~~~--~~~~~~~~~lk~~~~~~~~----~~~~~~~~~~~~~ 161 (216)
T KOG1962|consen 88 HLLEALFRAQRNLYISGFVLFLSLVIRRLHTLLRELATLRAN--EKAMKENEALKKQLENSSK----LEEENDKLKADLE 161 (216)
T ss_pred HHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHhhhcccc----hhhhHHHHHhhHH
Q ss_pred hHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001734 325 NIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLE 373 (1019)
Q Consensus 325 k~eek~~~~e~~~~~l~ke~~~~~~e~~~Lk~ele~~k~~~e~~~~~le 373 (1019)
+++++.+....+..+..+..+...+....+..|...+.+.|.....+.+
T Consensus 162 kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 162 KLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
No 481
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=38.98 E-value=25 Score=40.86 Aligned_cols=29 Identities=38% Similarity=0.636 Sum_probs=22.3
Q ss_pred HHHHHHHcCcc---eeEEeecccCCCCceeeec
Q 001734 562 PLIRSVLDGYN---VCIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 562 pLV~svLdG~N---~~IfAYGQTGSGKTyTM~G 591 (1019)
|.+...|.|.- -||| .|+||||||.-|.-
T Consensus 261 pvLNk~LkGhR~GElTvl-TGpTGsGKTTFlsE 292 (514)
T KOG2373|consen 261 PVLNKYLKGHRPGELTVL-TGPTGSGKTTFLSE 292 (514)
T ss_pred hHHHHHhccCCCCceEEE-ecCCCCCceeEehH
Confidence 67788888873 4555 59999999988754
No 482
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=38.73 E-value=11 Score=44.23 Aligned_cols=17 Identities=41% Similarity=0.911 Sum_probs=14.6
Q ss_pred eEEeecccCCCCceeee
Q 001734 574 CIFAYGQTGSGKTYTMS 590 (1019)
Q Consensus 574 ~IfAYGQTGSGKTyTM~ 590 (1019)
-|+-||.+||||||+.-
T Consensus 32 ~~~iyG~sgTGKT~~~r 48 (438)
T KOG2543|consen 32 IVHIYGHSGTGKTYLVR 48 (438)
T ss_pred eEEEeccCCCchhHHHH
Confidence 36899999999999863
No 483
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=38.11 E-value=7.1e+02 Score=29.03 Aligned_cols=80 Identities=11% Similarity=0.199 Sum_probs=48.1
Q ss_pred HHHHHHhHhhHHHhhHHHHHHHHHHHHHhH--HHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHHHHH---HHhhhhhhhh
Q 001734 415 WKRIEHSYQSFMGCQLGVIQDLRVAFESTK--HEVLETKKNYSKEFDCLGLNLKRLIDAAEKYHVIL---AENRRLYNEV 489 (1019)
Q Consensus 415 ~~~~~~~~~~~l~~Q~~~l~el~~~~~~~k--~ei~~~~~~~~~e~~~l~~~l~~l~~~~~~~~~~l---~erR~L~N~v 489 (1019)
|......+...+..|..-+++|+..+.... .++...+..+..........++.|..+-..|..+. .+=+++||.+
T Consensus 259 f~p~~~~l~~~~~~Q~~ll~el~~~~~~f~~~~~~~~~~~~~~~~~~~R~~~l~~l~~ay~~y~el~~~l~~G~~FY~dL 338 (356)
T cd09237 259 FKPLQNRLEATIFKQSSLINELKIELDKLFKLPGVKEKQSKEKSKQKLRKEFFEKLKKAYNSFKKFSAGLPKGLEFYDDL 338 (356)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 444555666677778888888887766553 23333333343334444455666777776665543 3456788887
Q ss_pred hhccC
Q 001734 490 QDLKG 494 (1019)
Q Consensus 490 qelkG 494 (1019)
.++-+
T Consensus 339 ~~~~~ 343 (356)
T cd09237 339 LKMAK 343 (356)
T ss_pred HHHHH
Confidence 76543
No 484
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=38.11 E-value=8.8e+02 Score=30.13 Aligned_cols=177 Identities=15% Similarity=0.146 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q 001734 307 EENQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKEN--DDRDIEISTLKQDLELAKRTHELHCLQLEEQIYE------ 378 (1019)
Q Consensus 307 ee~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~l~ke~--~~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~------ 378 (1019)
.+...+..++++++.+...++++....+..+..+.+-. ...+.++......|....+..+.-..-++.-..+
T Consensus 168 ~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~~~L~n~e~i~~~~~~~~~~L~~~~~~~~~ 247 (563)
T TIGR00634 168 QAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGEDEALEAEQQRLSNLEKLRELSQNALAALRGDVDVQEG 247 (563)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHHHHHhCHHHHHHHHHHHHHHHhCCcccccc
Q ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHhhHHHhhHHH---HHHH
Q 001734 379 -------------------TKIESQKKLQELERLLTVSKKKVEELESLSESKSQRWKRIEHSYQSFMGCQLGV---IQDL 436 (1019)
Q Consensus 379 -------------------~k~~le~~l~e~~~~l~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~l~~Q~~~---l~el 436 (1019)
.-.++.+.+.+....+++....+...-+..+.....+...+.++..+-....+. +.++
T Consensus 248 ~~~~~l~~~~~~l~~~~d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l 327 (563)
T TIGR00634 248 SLLEGLGEAQLALASVIDGSLRELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKRLKRKYGASVEEV 327 (563)
T ss_pred CHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Q ss_pred HHHHHHhHHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh
Q 001734 437 RVAFESTKHEVLETKKNYSKEFDCLGLNLKRLIDAAEKYHVILAENRR 484 (1019)
Q Consensus 437 ~~~~~~~k~ei~~~~~~~~~e~~~l~~~l~~l~~~~~~~~~~l~erR~ 484 (1019)
....+.++.++.... .+..++..|..++..+.+....+...+...|+
T Consensus 328 ~~~~~~l~~eL~~l~-~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~ 374 (563)
T TIGR00634 328 LEYAEKIKEELDQLD-DSDESLEALEEEVDKLEEELDKAAVALSLIRR 374 (563)
T ss_pred HHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 485
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=38.04 E-value=13 Score=41.41 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=16.7
Q ss_pred cCcceeEEeecccCCCCceeee
Q 001734 569 DGYNVCIFAYGQTGSGKTYTMS 590 (1019)
Q Consensus 569 dG~N~~IfAYGQTGSGKTyTM~ 590 (1019)
.|....++-||+.|+|||+++.
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~~ 56 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAAL 56 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHHH
Confidence 3444457889999999998764
No 486
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=37.96 E-value=5.7e+02 Score=27.89 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001734 382 ESQKKLQELERLLTVSKKKVEELE 405 (1019)
Q Consensus 382 ~le~~l~e~~~~l~~~~~~~~~le 405 (1019)
.|+.-++.++..+..++++|.++.
T Consensus 140 ~Le~~~~~le~~l~~~k~~ie~vN 163 (221)
T PF05700_consen 140 QLEAMLKRLEKELAKLKKEIEEVN 163 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555555544443
No 487
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=37.89 E-value=11 Score=49.02 Aligned_cols=27 Identities=26% Similarity=0.231 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001734 381 IESQKKLQELERLLTVSKKKVEELESL 407 (1019)
Q Consensus 381 ~~le~~l~e~~~~l~~~~~~~~~le~~ 407 (1019)
.+|++..+.++..+..++..+++++..
T Consensus 457 ~eLek~kr~LE~e~~El~~~leE~E~~ 483 (859)
T PF01576_consen 457 HELEKAKRRLEQEKEELQEQLEEAEDA 483 (859)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666665543
No 488
>PLN03025 replication factor C subunit; Provisional
Probab=37.84 E-value=16 Score=41.66 Aligned_cols=18 Identities=28% Similarity=0.488 Sum_probs=15.1
Q ss_pred eEEeecccCCCCceeeec
Q 001734 574 CIFAYGQTGSGKTYTMSG 591 (1019)
Q Consensus 574 ~IfAYGQTGSGKTyTM~G 591 (1019)
.++-||+.|+|||++...
T Consensus 36 ~lll~Gp~G~GKTtla~~ 53 (319)
T PLN03025 36 NLILSGPPGTGKTTSILA 53 (319)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 356699999999999865
No 489
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=37.76 E-value=4.5e+02 Score=26.64 Aligned_cols=72 Identities=18% Similarity=0.375 Sum_probs=34.8
Q ss_pred hhhHHHHHHHHhHhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhh
Q 001734 410 SKSQRWKRIEHSYQSFMGCQLGVIQDLRVAFESTKHEVLETKKNYSKEFDCLGLNLKRLIDAAEKYHVILAENRRLYNEV 489 (1019)
Q Consensus 410 ~~~~~~~~~~~~~~~~l~~Q~~~l~el~~~~~~~k~ei~~~~~~~~~e~~~l~~~l~~l~~~~~~~~~~l~erR~L~N~v 489 (1019)
..++.|..--..|..++. .+.+.+..+..+|..+..++.. +..-...|+.|......|..++ .+.++|
T Consensus 62 eh~q~Fn~sI~sy~~i~~----~i~~sq~~i~~lK~~L~~ak~~----L~~~~~eL~~L~~~s~~~~~mi----~iL~~I 129 (142)
T PF04048_consen 62 EHYQGFNSSIGSYSQILS----SISESQERIRELKESLQEAKSL----LGCRREELKELWQRSQEYKEMI----EILDQI 129 (142)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 444555544444444332 2444444555555555554432 2233345666666666666554 244445
Q ss_pred hhcc
Q 001734 490 QDLK 493 (1019)
Q Consensus 490 qelk 493 (1019)
++++
T Consensus 130 e~l~ 133 (142)
T PF04048_consen 130 EELR 133 (142)
T ss_pred HHHH
Confidence 4443
No 490
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=37.60 E-value=16 Score=45.76 Aligned_cols=25 Identities=40% Similarity=0.648 Sum_probs=20.1
Q ss_pred HHHHHHcCcceeEEeecccCCCCceee
Q 001734 563 LIRSVLDGYNVCIFAYGQTGSGKTYTM 589 (1019)
Q Consensus 563 LV~svLdG~N~~IfAYGQTGSGKTyTM 589 (1019)
.|..++.|.+ |++.+|||||||.+.
T Consensus 36 ai~~ll~g~d--vl~~ApTGsGKT~af 60 (629)
T PRK11634 36 CIPHLLNGRD--VLGMAQTGSGKTAAF 60 (629)
T ss_pred HHHHHHcCCC--EEEEcCCCCcHHHHH
Confidence 4566788877 677889999999875
No 491
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=37.45 E-value=17 Score=43.71 Aligned_cols=27 Identities=30% Similarity=0.353 Sum_probs=21.2
Q ss_pred HHHHHHHcCcceeEEeecccCCCCceeee
Q 001734 562 PLIRSVLDGYNVCIFAYGQTGSGKTYTMS 590 (1019)
Q Consensus 562 pLV~svLdG~N~~IfAYGQTGSGKTyTM~ 590 (1019)
..+..+++|.|+.+ ..+||||||.+..
T Consensus 116 ~ai~~~~~G~dvi~--~apTGSGKTlay~ 142 (475)
T PRK01297 116 QVLGYTLAGHDAIG--RAQTGTGKTAAFL 142 (475)
T ss_pred HHHHHHhCCCCEEE--ECCCCChHHHHHH
Confidence 46778899998755 5599999997653
No 492
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=37.43 E-value=6.9e+02 Score=32.12 Aligned_cols=156 Identities=16% Similarity=0.236 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001734 323 KTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLTVSKKKVE 402 (1019)
Q Consensus 323 ~~k~eek~~~~e~~~~~l~ke~~~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le~~l~e~~~~l~~~~~~~~ 402 (1019)
...++.|.....+...-|.++......++....++|+..|+.|..--...+.+..- .++.+++..+..++.+..
T Consensus 255 ~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l------~~~~~l~~ql~~l~~~~~ 328 (726)
T PRK09841 255 QQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVL------EQIVNVDNQLNELTFREA 328 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHH------HHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhhhhHHHHHHHHhHhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Q 001734 403 ELESLSESKSQRWKRIEHSYQSFMGCQLGVIQDLRVAFESTKHEVLETKKNYSKEFDCLGLNLKRLIDAAEKYHVILAEN 482 (1019)
Q Consensus 403 ~le~~~~~~~~~~~~~~~~~~~~l~~Q~~~l~el~~~~~~~k~ei~~~~~~~~~e~~~l~~~l~~l~~~~~~~~~~l~er 482 (1019)
++.+.-..++-.++....+ ...++.|...++.--..+-....++...++.+. ...+.|...+..+
T Consensus 329 ~l~~~~~~~hP~v~~l~~~-~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~--------------~~~~lY~~lL~r~ 393 (726)
T PRK09841 329 EISQLYKKDHPTYRALLEK-RQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVE--------------AGRAVYLQLLNRQ 393 (726)
T ss_pred HHHHHhcccCchHHHHHHH-HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--------------HHHHHHHHHHHHH
Q ss_pred hhhhhhhhhccCCEEEE
Q 001734 483 RRLYNEVQDLKGNIRVY 499 (1019)
Q Consensus 483 R~L~N~vqelkGnIrV~ 499 (1019)
..+-=...--.+++||+
T Consensus 394 ~e~~i~~a~~~~~~rIi 410 (726)
T PRK09841 394 QELSISKSSAIGNVRII 410 (726)
T ss_pred HHHHHHhccCCCceeec
No 493
>PF05729 NACHT: NACHT domain
Probab=37.33 E-value=13 Score=36.74 Aligned_cols=16 Identities=31% Similarity=0.663 Sum_probs=0.0
Q ss_pred eEEeecccCCCCceee
Q 001734 574 CIFAYGQTGSGKTYTM 589 (1019)
Q Consensus 574 ~IfAYGQTGSGKTyTM 589 (1019)
.++-+|..|+|||..|
T Consensus 2 ~l~I~G~~G~GKStll 17 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL 17 (166)
T ss_pred EEEEECCCCCChHHHH
No 494
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=37.32 E-value=12 Score=42.11 Aligned_cols=18 Identities=44% Similarity=0.798 Sum_probs=0.0
Q ss_pred CcceeEEeecccCCCCce
Q 001734 570 GYNVCIFAYGQTGSGKTY 587 (1019)
Q Consensus 570 G~N~~IfAYGQTGSGKTy 587 (1019)
|++-+|+..|++|+|||.
T Consensus 2 g~~fnImVvG~sG~GKTT 19 (281)
T PF00735_consen 2 GFNFNIMVVGESGLGKTT 19 (281)
T ss_dssp EEEEEEEEEECTTSSHHH
T ss_pred CceEEEEEECCCCCCHHH
No 495
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=37.12 E-value=8.6e+02 Score=29.73 Aligned_cols=185 Identities=18% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhHHHhhhhhHHHhhHHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001734 259 LRKVVPLIERRTATQYQNFKNQNNLFRAREEKYKSRIRVLETLTVGTTEENQVVANQLERIKTEKTNIAQKEKLEEQNAL 338 (1019)
Q Consensus 259 l~kvv~e~e~~is~q~~~~~~q~~~~~~~~~~~~~~~~~le~l~~~~~ee~~~~~~~l~~l~~e~~k~eek~~~~e~~~~ 338 (1019)
|-|-|+|+--.++.|..-+.-=|.|-..-++....+-+ +.-||.-++...+-..+-+.
T Consensus 343 Le~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY~----------------------viLEKnd~~k~lqnLqe~la 400 (527)
T PF15066_consen 343 LEKKVKELQMKITKQQVFVDIINKLKENIEELIEDKYR----------------------VILEKNDIEKTLQNLQEALA 400 (527)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHhH----------------------hhhhhhhHHHHHHHHHHHHH
Q ss_pred HhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 001734 339 RLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLTVSKKKVEELESLSESKSQRWKRI 418 (1019)
Q Consensus 339 ~l~ke~~~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le~~l~e~~~~l~~~~~~~~~le~~~~~~~~~~~~~ 418 (1019)
...|.......|-.+|.=||..+|.-|-......-+..++ |.+--.+.-+++..|.+....|+-|+.++..-.++-..-
T Consensus 401 ~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQq-KnksvsqclEmdk~LskKeeeverLQ~lkgelEkat~SA 479 (527)
T PF15066_consen 401 NTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQ-KNKSVSQCLEMDKTLSKKEEEVERLQQLKGELEKATTSA 479 (527)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHhhhhhHH
Q 001734 419 EHSYQSFMGCQLGVIQDLRVAFESTKHEVLETKKNYSKEFDCLGLNLK 466 (1019)
Q Consensus 419 ~~~~~~~l~~Q~~~l~el~~~~~~~k~ei~~~~~~~~~e~~~l~~~l~ 466 (1019)
-..++.--+.+.+.+.-|...++..+.+-++.+.+..-.+..|.++++
T Consensus 480 LdlLkrEKe~~EqefLslqeEfQk~ekenl~ERqkLKs~leKLvaqvk 527 (527)
T PF15066_consen 480 LDLLKREKETREQEFLSLQEEFQKHEKENLEERQKLKSRLEKLVAQVK 527 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcC
No 496
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=36.90 E-value=12 Score=44.54 Aligned_cols=16 Identities=44% Similarity=0.598 Sum_probs=0.0
Q ss_pred eEEeecccCCCCceee
Q 001734 574 CIFAYGQTGSGKTYTM 589 (1019)
Q Consensus 574 ~IfAYGQTGSGKTyTM 589 (1019)
+|+-.|+||+|||+|+
T Consensus 223 ~i~~vGptGvGKTTt~ 238 (424)
T PRK05703 223 VVALVGPTGVGKTTTL 238 (424)
T ss_pred EEEEECCCCCCHHHHH
No 497
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=36.75 E-value=12 Score=36.68 Aligned_cols=15 Identities=53% Similarity=0.829 Sum_probs=0.0
Q ss_pred EEeecccCCCCceee
Q 001734 575 IFAYGQTGSGKTYTM 589 (1019)
Q Consensus 575 IfAYGQTGSGKTyTM 589 (1019)
++-||++|+|||+.+
T Consensus 2 ~~i~G~~G~GKT~l~ 16 (165)
T cd01120 2 ILVFGPTGSGKTTLA 16 (165)
T ss_pred eeEeCCCCCCHHHHH
No 498
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=36.69 E-value=5.2e+02 Score=27.44 Aligned_cols=118 Identities=19% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001734 309 NQVVANQLERIKTEKTNIAQKEKLEEQNALRLKKENDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQ 388 (1019)
Q Consensus 309 ~~~~~~~l~~l~~e~~k~eek~~~~e~~~~~l~ke~~~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le~~l~ 388 (1019)
+..+..+|.++...+..+.........++..+.++.......|..|+.++..++........+++.+ ......+...+.
T Consensus 76 ~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek-~k~~e~l~DE~~ 154 (194)
T PF08614_consen 76 LAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEK-NKANEILQDELQ 154 (194)
T ss_dssp --------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHhhHHH
Q 001734 389 ELERLLTVSKKKVEELESLSESKSQRWKRIEHSYQSFMG 427 (1019)
Q Consensus 389 e~~~~l~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~l~ 427 (1019)
.+...+..+..+++.|+.-...--++|-.+...-...|.
T Consensus 155 ~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~~eAe~mN 193 (194)
T PF08614_consen 155 ALQLQLNMLEEKLRKLEEENRELVERWMQRKAQEAERMN 193 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 499
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=36.67 E-value=13 Score=40.47 Aligned_cols=17 Identities=41% Similarity=0.657 Sum_probs=0.0
Q ss_pred ceeEEeecccCCCCcee
Q 001734 572 NVCIFAYGQTGSGKTYT 588 (1019)
Q Consensus 572 N~~IfAYGQTGSGKTyT 588 (1019)
...++-||+.|+|||++
T Consensus 12 ~~~~liyG~~G~GKtt~ 28 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTST 28 (220)
T ss_pred CcEEEEECCCCCCHHHH
No 500
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=36.45 E-value=1.8e+02 Score=33.42 Aligned_cols=135 Identities=16% Similarity=0.145 Sum_probs=0.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhHh
Q 001734 344 NDDRDIEISTLKQDLELAKRTHELHCLQLEEQIYETKIESQKKLQELERLLTVSKKKVEELESLSESKSQRWKRIEHSYQ 423 (1019)
Q Consensus 344 ~~~~~~e~~~Lk~ele~~k~~~e~~~~~le~~~~~~k~~le~~l~e~~~~l~~~~~~~~~le~~~~~~~~~~~~~~~~~~ 423 (1019)
.++.+..+..|+.+++.-.+..+. |++--..-..+++++..-|.+||++--+.- ...
T Consensus 2 Vdd~QN~N~EL~kQiEIcqEENki---------------LdK~hRQKV~EVEKLsqTi~ELEEaiLagG--------aaa 58 (351)
T PF07058_consen 2 VDDVQNQNQELMKQIEICQEENKI---------------LDKMHRQKVLEVEKLSQTIRELEEAILAGG--------AAA 58 (351)
T ss_pred chhhhhhcHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------hHH
Q ss_pred hHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCEEEEee
Q 001734 424 SFMGCQLGVIQDLRVAFESTKHEVLETKKNYSKEFDCLGLNLKRLIDAAEKYHVILAENRRLYNEVQDLKGNIRVYCR 501 (1019)
Q Consensus 424 ~~l~~Q~~~l~el~~~~~~~k~ei~~~~~~~~~e~~~l~~~l~~l~~~~~~~~~~l~erR~L~N~vqelkGnIrV~~R 501 (1019)
+.+..=++.+++|...-..+..|+...+-....-..-.-..-+.-.+-.==....|+|||-|.-++|.|+..+-|.=|
T Consensus 59 NavrdYqrq~~elneEkrtLeRELARaKV~aNRVA~vvANEWKD~nDkvMPVKqWLEERR~lQgEmQ~LrDKLAiaER 136 (351)
T PF07058_consen 59 NAVRDYQRQVQELNEEKRTLERELARAKVSANRVATVVANEWKDENDKVMPVKQWLEERRFLQGEMQQLRDKLAIAER 136 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!