Query 001735
Match_columns 1019
No_of_seqs 584 out of 3506
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 08:04:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001735.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001735hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0733 Nuclear AAA ATPase (VC 100.0 5.6E-75 1.2E-79 661.2 43.6 471 473-1010 270-792 (802)
2 KOG0730 AAA+-type ATPase [Post 100.0 5.7E-69 1.2E-73 621.3 37.0 408 473-992 265-681 (693)
3 TIGR01243 CDC48 AAA family ATP 100.0 1.5E-58 3.2E-63 567.4 41.9 462 473-1008 259-731 (733)
4 KOG0737 AAA+-type ATPase [Post 100.0 3E-57 6.5E-62 497.9 28.7 368 638-1012 4-386 (386)
5 KOG0736 Peroxisome assembly fa 100.0 5.7E-54 1.2E-58 499.6 43.4 450 473-992 478-939 (953)
6 COG0464 SpoVK ATPases of the A 100.0 1.9E-49 4E-54 467.3 36.0 419 471-990 62-488 (494)
7 KOG0741 AAA+-type ATPase [Post 100.0 1.5E-50 3.2E-55 455.4 24.3 377 487-946 326-719 (744)
8 KOG0738 AAA+-type ATPase [Post 100.0 5.5E-48 1.2E-52 424.0 25.4 281 723-1008 205-490 (491)
9 COG1222 RPT1 ATP-dependent 26S 100.0 1.8E-47 3.9E-52 418.5 24.4 247 724-988 145-395 (406)
10 KOG0735 AAA+-type ATPase [Post 100.0 5.5E-45 1.2E-49 421.2 38.1 401 473-959 482-894 (952)
11 KOG0733 Nuclear AAA ATPase (VC 100.0 2.5E-45 5.3E-50 419.2 20.4 286 725-1013 185-521 (802)
12 KOG0739 AAA+-type ATPase [Post 100.0 1.5E-43 3.3E-48 377.8 19.0 286 719-1010 122-439 (439)
13 CHL00195 ycf46 Ycf46; Provisio 100.0 1.6E-37 3.5E-42 363.4 39.8 259 724-1006 222-484 (489)
14 KOG0734 AAA+-type ATPase conta 100.0 1.9E-39 4.1E-44 366.3 20.2 251 719-989 293-545 (752)
15 KOG0732 AAA+-type ATPase conta 100.0 2.6E-38 5.7E-43 384.4 15.3 362 473-914 351-727 (1080)
16 KOG0740 AAA+-type ATPase [Post 100.0 8.1E-38 1.8E-42 355.0 18.1 281 723-1010 146-427 (428)
17 KOG0728 26S proteasome regulat 100.0 2.6E-36 5.7E-41 316.2 21.5 247 725-990 142-393 (404)
18 KOG0652 26S proteasome regulat 100.0 2E-36 4.2E-41 318.5 18.7 245 724-987 165-414 (424)
19 KOG0727 26S proteasome regulat 100.0 8.8E-36 1.9E-40 312.5 20.9 246 723-986 148-397 (408)
20 COG1223 Predicted ATPase (AAA+ 100.0 7.2E-36 1.6E-40 314.8 20.0 243 726-990 117-360 (368)
21 KOG0726 26S proteasome regulat 100.0 1.8E-36 3.9E-41 322.9 15.2 244 724-986 179-427 (440)
22 KOG0731 AAA+-type ATPase conta 100.0 1.6E-35 3.4E-40 352.9 22.7 249 722-989 303-557 (774)
23 PTZ00454 26S protease regulato 100.0 7.2E-35 1.6E-39 334.3 25.4 247 724-988 139-389 (398)
24 KOG0729 26S proteasome regulat 100.0 5.6E-35 1.2E-39 308.3 17.3 246 724-988 171-421 (435)
25 PRK03992 proteasome-activating 100.0 5.6E-34 1.2E-38 327.0 25.1 251 724-992 125-379 (389)
26 KOG0730 AAA+-type ATPase [Post 100.0 6.6E-35 1.4E-39 338.9 16.3 263 726-1014 181-445 (693)
27 TIGR01241 FtsH_fam ATP-depende 100.0 6.8E-33 1.5E-37 327.2 24.3 269 723-1010 48-320 (495)
28 PTZ00361 26 proteosome regulat 100.0 6.4E-33 1.4E-37 320.7 23.3 246 724-987 177-426 (438)
29 COG0465 HflB ATP-dependent Zn 100.0 2.5E-33 5.5E-38 329.5 20.1 264 724-1006 144-415 (596)
30 TIGR01243 CDC48 AAA family ATP 100.0 1.6E-31 3.4E-36 329.0 22.7 285 725-1013 173-463 (733)
31 TIGR03689 pup_AAA proteasome A 100.0 3.4E-31 7.3E-36 310.3 24.3 275 723-1012 175-504 (512)
32 TIGR01242 26Sp45 26S proteasom 100.0 4.5E-31 9.7E-36 300.4 24.4 244 724-985 116-363 (364)
33 KOG0651 26S proteasome regulat 100.0 1.1E-31 2.5E-36 289.2 15.0 243 726-986 128-374 (388)
34 CHL00176 ftsH cell division pr 100.0 3.9E-30 8.4E-35 309.6 24.7 244 724-986 177-424 (638)
35 COG1222 RPT1 ATP-dependent 26S 100.0 1.9E-30 4.1E-35 285.1 15.3 243 175-692 144-395 (406)
36 PRK10733 hflB ATP-dependent me 100.0 2.4E-29 5.2E-34 304.9 23.9 250 723-991 145-398 (644)
37 KOG0732 AAA+-type ATPase conta 100.0 1.7E-29 3.6E-34 308.0 16.6 265 724-992 259-532 (1080)
38 KOG0737 AAA+-type ATPase [Post 100.0 1.4E-28 3E-33 271.9 15.9 277 161-692 71-362 (386)
39 CHL00206 ycf2 Ycf2; Provisiona 100.0 2.9E-28 6.2E-33 306.8 20.7 210 757-989 1623-1881(2281)
40 KOG0741 AAA+-type ATPase [Post 100.0 6.5E-29 1.4E-33 281.2 13.5 265 726-993 215-498 (744)
41 PLN00020 ribulose bisphosphate 99.9 1.2E-26 2.6E-31 258.9 19.4 220 762-985 145-391 (413)
42 KOG0738 AAA+-type ATPase [Post 99.9 3.5E-24 7.5E-29 237.0 17.5 268 163-692 194-472 (491)
43 COG0464 SpoVK ATPases of the A 99.9 3.7E-23 7.9E-28 244.4 17.9 260 161-692 217-486 (494)
44 TIGR02639 ClpA ATP-dependent C 99.9 2.1E-21 4.5E-26 239.4 33.3 389 473-955 262-716 (731)
45 KOG0736 Peroxisome assembly fa 99.9 7.7E-23 1.7E-27 240.4 15.0 248 763-1013 429-682 (953)
46 CHL00195 ycf46 Ycf46; Provisio 99.9 1.3E-21 2.8E-26 229.9 16.7 156 473-692 306-466 (489)
47 PRK11034 clpA ATP-dependent Cl 99.9 7.9E-20 1.7E-24 224.2 31.2 392 472-956 265-721 (758)
48 KOG0740 AAA+-type ATPase [Post 99.9 1.2E-21 2.6E-26 223.5 13.1 261 176-692 147-407 (428)
49 PTZ00454 26S protease regulato 99.9 1.7E-21 3.7E-26 224.2 14.0 154 473-691 226-388 (398)
50 KOG0728 26S proteasome regulat 99.9 3E-21 6.6E-26 203.4 13.1 159 473-691 228-390 (404)
51 KOG0739 AAA+-type ATPase [Post 99.9 4.4E-21 9.5E-26 206.3 14.0 133 473-643 213-347 (439)
52 PRK03992 proteasome-activating 99.8 5.7E-21 1.2E-25 219.8 14.1 156 473-693 212-376 (389)
53 KOG0731 AAA+-type ATPase conta 99.8 1.2E-20 2.5E-25 226.4 16.1 156 473-692 391-556 (774)
54 KOG0735 AAA+-type ATPase [Post 99.8 1E-20 2.2E-25 220.9 13.3 236 766-1013 432-677 (952)
55 KOG0734 AAA+-type ATPase conta 99.8 1.3E-20 2.8E-25 214.6 12.8 154 473-692 384-544 (752)
56 KOG0744 AAA+-type ATPase [Post 99.8 4E-20 8.8E-25 201.1 13.2 249 718-985 130-414 (423)
57 CHL00181 cbbX CbbX; Provisiona 99.8 3.2E-19 6.9E-24 197.6 18.8 237 730-980 23-281 (287)
58 PTZ00361 26 proteosome regulat 99.8 4.6E-20 9.9E-25 214.1 12.2 154 473-691 264-426 (438)
59 KOG0726 26S proteasome regulat 99.8 1.7E-20 3.7E-25 201.2 7.5 154 473-691 266-428 (440)
60 TIGR01241 FtsH_fam ATP-depende 99.8 4.7E-20 1E-24 218.3 11.5 154 473-691 135-297 (495)
61 TIGR02881 spore_V_K stage V sp 99.8 9.3E-19 2E-23 191.0 17.5 218 728-957 4-245 (261)
62 TIGR02880 cbbX_cfxQ probable R 99.8 1.1E-18 2.3E-23 193.2 18.0 237 731-981 23-281 (284)
63 PF00004 AAA: ATPase family as 99.8 4.5E-19 9.8E-24 170.6 12.8 130 768-899 1-132 (132)
64 KOG0742 AAA+-type ATPase [Post 99.8 1.4E-18 2.9E-23 193.2 18.2 208 727-945 352-587 (630)
65 COG1223 Predicted ATPase (AAA+ 99.8 2.7E-19 5.9E-24 189.9 12.1 156 473-691 198-357 (368)
66 CHL00206 ycf2 Ycf2; Provisiona 99.8 3.6E-19 7.7E-24 225.8 13.7 156 473-691 1720-1879(2281)
67 TIGR03689 pup_AAA proteasome A 99.8 1.8E-18 3.8E-23 203.7 14.0 123 473-642 273-406 (512)
68 CHL00176 ftsH cell division pr 99.8 2E-18 4.3E-23 208.8 13.1 154 473-691 263-425 (638)
69 KOG0652 26S proteasome regulat 99.8 4.1E-18 8.8E-23 180.8 13.7 158 473-692 252-415 (424)
70 COG0465 HflB ATP-dependent Zn 99.8 5.2E-18 1.1E-22 200.8 14.1 155 473-692 230-393 (596)
71 KOG0729 26S proteasome regulat 99.7 3.5E-18 7.7E-23 181.6 9.6 155 473-692 258-421 (435)
72 KOG0727 26S proteasome regulat 99.7 1.9E-17 4E-22 175.2 13.3 159 473-691 236-398 (408)
73 TIGR01242 26Sp45 26S proteasom 99.7 1.4E-17 3E-22 190.1 11.8 152 473-689 203-363 (364)
74 PRK10733 hflB ATP-dependent me 99.7 1.7E-17 3.8E-22 201.9 12.6 157 473-692 232-395 (644)
75 KOG0743 AAA+-type ATPase [Post 99.7 8.8E-17 1.9E-21 182.9 17.2 219 727-956 198-429 (457)
76 TIGR03345 VI_ClpV1 type VI sec 99.7 1.4E-15 2.9E-20 190.1 29.2 203 731-956 567-836 (852)
77 KOG0651 26S proteasome regulat 99.7 1.9E-17 4.2E-22 179.8 10.1 155 473-692 213-376 (388)
78 CHL00095 clpC Clp protease ATP 99.7 3E-15 6.4E-20 187.2 28.7 209 731-956 510-787 (821)
79 TIGR03346 chaperone_ClpB ATP-d 99.7 5E-15 1.1E-19 185.8 28.5 207 730-956 565-831 (852)
80 PLN00020 ribulose bisphosphate 99.7 2.6E-16 5.6E-21 176.7 13.9 122 473-623 195-326 (413)
81 PRK10865 protein disaggregatio 99.7 4.6E-14 1E-18 176.8 33.4 206 729-956 567-834 (857)
82 PF05496 RuvB_N: Holliday junc 99.7 6.7E-16 1.4E-20 163.8 14.0 188 727-944 21-223 (233)
83 TIGR02639 ClpA ATP-dependent C 99.7 1.5E-15 3.3E-20 187.7 18.6 224 727-986 179-430 (731)
84 TIGR00635 ruvB Holliday juncti 99.7 5.3E-15 1.1E-19 164.2 20.9 220 728-985 2-229 (305)
85 PRK00080 ruvB Holliday junctio 99.6 1.3E-14 2.8E-19 163.5 23.7 225 727-989 22-254 (328)
86 COG2256 MGS1 ATPase related to 99.6 3.7E-15 8E-20 167.5 17.3 167 727-933 21-204 (436)
87 TIGR00763 lon ATP-dependent pr 99.6 4.6E-15 9.9E-20 184.5 17.5 231 731-982 321-583 (775)
88 PRK11034 clpA ATP-dependent Cl 99.6 1.1E-14 2.4E-19 179.3 18.8 197 728-948 184-407 (758)
89 PRK00149 dnaA chromosomal repl 99.6 4E-14 8.7E-19 166.2 21.1 212 766-1007 149-371 (450)
90 TIGR00362 DnaA chromosomal rep 99.6 5.9E-14 1.3E-18 162.5 21.0 190 766-985 137-337 (405)
91 PRK12323 DNA polymerase III su 99.6 1.2E-13 2.6E-18 165.0 20.1 184 727-947 13-230 (700)
92 PRK14956 DNA polymerase III su 99.5 1.3E-13 2.8E-18 161.1 18.8 184 727-947 15-227 (484)
93 COG0542 clpA ATP-binding subun 99.5 1E-12 2.3E-17 159.7 26.0 205 731-955 492-759 (786)
94 PRK07003 DNA polymerase III su 99.5 1.6E-13 3.4E-18 165.7 18.8 185 727-948 13-226 (830)
95 COG2255 RuvB Holliday junction 99.5 1.6E-13 3.5E-18 148.5 16.6 195 727-944 23-225 (332)
96 TIGR03345 VI_ClpV1 type VI sec 99.5 3.3E-13 7.1E-18 169.0 21.4 196 727-947 184-407 (852)
97 PRK14962 DNA polymerase III su 99.5 2.6E-13 5.7E-18 159.8 18.7 182 727-945 11-221 (472)
98 PRK10865 protein disaggregatio 99.5 2.5E-13 5.4E-18 170.3 17.4 165 728-917 176-358 (857)
99 PRK13342 recombination factor 99.5 1E-12 2.2E-17 152.8 21.2 180 727-947 9-201 (413)
100 PRK14960 DNA polymerase III su 99.5 7.3E-13 1.6E-17 158.7 20.3 184 727-947 12-224 (702)
101 PRK14961 DNA polymerase III su 99.5 8.4E-13 1.8E-17 151.1 19.8 184 727-947 13-225 (363)
102 TIGR02928 orc1/cdc6 family rep 99.5 2.7E-12 5.8E-17 145.9 23.5 221 730-986 15-275 (365)
103 PRK14088 dnaA chromosomal repl 99.5 1.1E-12 2.5E-17 153.5 20.9 213 766-1007 131-356 (440)
104 PRK14958 DNA polymerase III su 99.5 7.8E-13 1.7E-17 157.3 19.4 184 727-947 13-225 (509)
105 PRK12422 chromosomal replicati 99.5 7E-13 1.5E-17 155.4 18.8 216 765-1008 141-367 (445)
106 TIGR02902 spore_lonB ATP-depen 99.5 5.4E-13 1.2E-17 159.6 17.3 213 727-983 62-330 (531)
107 PRK14086 dnaA chromosomal repl 99.5 2.1E-12 4.5E-17 154.6 21.8 211 766-1007 315-538 (617)
108 CHL00095 clpC Clp protease ATP 99.5 6.4E-13 1.4E-17 166.5 18.1 185 727-936 176-382 (821)
109 PRK14949 DNA polymerase III su 99.5 1.1E-12 2.3E-17 161.1 19.6 184 727-947 13-225 (944)
110 PRK07994 DNA polymerase III su 99.5 1.1E-12 2.3E-17 158.8 19.2 184 727-947 13-225 (647)
111 PRK05342 clpX ATP-dependent pr 99.5 6E-13 1.3E-17 154.3 16.1 234 722-955 62-383 (412)
112 PRK04195 replication factor C 99.5 7.8E-13 1.7E-17 156.6 17.4 184 727-945 11-202 (482)
113 TIGR00390 hslU ATP-dependent p 99.5 9.7E-13 2.1E-17 150.9 17.2 178 732-909 14-342 (441)
114 TIGR03346 chaperone_ClpB ATP-d 99.5 7.6E-13 1.6E-17 166.3 17.8 183 728-935 171-376 (852)
115 PRK00411 cdc6 cell division co 99.5 5.6E-12 1.2E-16 144.8 23.1 223 729-987 29-284 (394)
116 PRK06645 DNA polymerase III su 99.5 1.9E-12 4.1E-17 153.5 19.3 186 727-949 18-236 (507)
117 PRK14964 DNA polymerase III su 99.4 2.5E-12 5.4E-17 151.5 19.9 185 727-948 10-223 (491)
118 PRK07940 DNA polymerase III su 99.4 1.8E-12 3.9E-17 149.7 18.3 186 728-943 3-215 (394)
119 PRK08691 DNA polymerase III su 99.4 2E-12 4.4E-17 156.1 19.3 185 727-948 13-226 (709)
120 KOG2028 ATPase related to the 99.4 2.4E-12 5.1E-17 142.6 17.4 208 727-986 135-369 (554)
121 PRK14087 dnaA chromosomal repl 99.4 4.9E-12 1.1E-16 148.6 21.1 222 766-1017 142-385 (450)
122 TIGR03420 DnaA_homol_Hda DnaA 99.4 4.9E-12 1.1E-16 134.0 18.6 185 727-948 12-207 (226)
123 PRK05201 hslU ATP-dependent pr 99.4 2.1E-12 4.5E-17 148.3 15.9 178 732-909 17-344 (443)
124 PRK14969 DNA polymerase III su 99.4 4.1E-12 9E-17 151.8 19.1 185 727-948 13-226 (527)
125 PRK14963 DNA polymerase III su 99.4 5.4E-12 1.2E-16 149.9 19.6 184 727-947 11-222 (504)
126 PRK14959 DNA polymerase III su 99.4 6.7E-12 1.4E-16 150.9 20.6 185 727-945 13-223 (624)
127 PRK14951 DNA polymerase III su 99.4 4.5E-12 9.9E-17 153.0 18.7 185 727-948 13-231 (618)
128 PRK05563 DNA polymerase III su 99.4 6.9E-12 1.5E-16 150.9 20.1 184 727-947 13-225 (559)
129 PLN03025 replication factor C 99.4 7.7E-12 1.7E-16 140.7 19.2 183 727-944 10-202 (319)
130 PRK06893 DNA replication initi 99.4 4.3E-12 9.3E-17 136.4 16.3 180 766-983 40-228 (229)
131 PRK08084 DNA replication initi 99.4 1.1E-11 2.4E-16 133.8 19.6 205 726-983 18-234 (235)
132 PRK14957 DNA polymerase III su 99.4 7.3E-12 1.6E-16 149.4 19.9 184 727-947 13-225 (546)
133 PRK12402 replication factor C 99.4 6.4E-12 1.4E-16 140.8 18.0 183 727-941 12-225 (337)
134 PRK08903 DnaA regulatory inact 99.4 1.2E-11 2.7E-16 131.9 19.0 199 727-983 15-224 (227)
135 PTZ00112 origin recognition co 99.4 1.1E-11 2.3E-16 150.4 20.2 217 730-987 755-1008(1164)
136 TIGR02397 dnaX_nterm DNA polym 99.4 1E-11 2.2E-16 140.5 18.6 185 727-948 11-224 (355)
137 PHA02544 44 clamp loader, smal 99.4 1.1E-11 2.4E-16 138.4 18.0 156 727-914 18-174 (316)
138 PRK10787 DNA-binding ATP-depen 99.4 1.1E-11 2.4E-16 154.0 19.3 226 731-983 323-580 (784)
139 PRK14952 DNA polymerase III su 99.4 1.7E-11 3.8E-16 147.4 20.2 189 727-948 10-225 (584)
140 PRK08727 hypothetical protein; 99.4 2.6E-11 5.7E-16 130.7 19.0 180 766-984 42-230 (233)
141 PRK07764 DNA polymerase III su 99.4 1.5E-11 3.2E-16 153.0 19.3 186 727-945 12-224 (824)
142 PRK13341 recombination factor 99.4 1.6E-11 3.5E-16 151.1 19.1 180 727-947 25-222 (725)
143 TIGR00382 clpX endopeptidase C 99.3 1.5E-11 3.3E-16 142.4 17.1 228 727-954 73-388 (413)
144 PRK07133 DNA polymerase III su 99.3 3.2E-11 6.8E-16 147.0 20.6 190 727-947 15-224 (725)
145 KOG2004 Mitochondrial ATP-depe 99.3 8.5E-12 1.8E-16 147.5 14.7 165 731-914 412-597 (906)
146 PRK05896 DNA polymerase III su 99.3 2.6E-11 5.6E-16 145.2 19.2 183 727-946 13-224 (605)
147 PRK06647 DNA polymerase III su 99.3 3.6E-11 7.8E-16 144.6 19.9 184 727-947 13-225 (563)
148 PF05673 DUF815: Protein of un 99.3 3E-11 6.4E-16 130.2 17.1 188 726-943 23-242 (249)
149 PRK05642 DNA replication initi 99.3 3.8E-11 8.2E-16 129.7 18.1 179 766-983 46-233 (234)
150 PRK14953 DNA polymerase III su 99.3 4E-11 8.7E-16 142.1 19.8 184 727-947 13-225 (486)
151 PRK14965 DNA polymerase III su 99.3 2.9E-11 6.4E-16 146.1 18.6 183 727-946 13-224 (576)
152 KOG0989 Replication factor C, 99.3 2.8E-11 6.1E-16 132.5 15.7 173 727-933 33-222 (346)
153 PF00308 Bac_DnaA: Bacterial d 99.3 5.3E-11 1.1E-15 127.4 17.6 196 725-946 3-212 (219)
154 PRK06305 DNA polymerase III su 99.3 7.6E-11 1.7E-15 138.7 19.8 187 727-946 14-226 (451)
155 PRK08451 DNA polymerase III su 99.3 7.2E-11 1.6E-15 140.5 19.6 186 727-949 11-225 (535)
156 PRK14970 DNA polymerase III su 99.3 7.6E-11 1.6E-15 134.9 19.0 184 727-947 14-214 (367)
157 PRK06620 hypothetical protein; 99.3 8.8E-11 1.9E-15 125.4 18.0 164 766-982 45-213 (214)
158 PRK00440 rfc replication facto 99.3 9.8E-11 2.1E-15 130.2 18.7 182 727-946 14-207 (319)
159 COG0466 Lon ATP-dependent Lon 99.3 3.6E-11 7.8E-16 143.2 15.9 165 731-914 324-509 (782)
160 PRK09111 DNA polymerase III su 99.3 1.3E-10 2.7E-15 140.6 20.5 190 727-947 21-238 (598)
161 TIGR02903 spore_lon_C ATP-depe 99.3 6.1E-10 1.3E-14 135.7 25.4 224 727-986 151-431 (615)
162 PRK14955 DNA polymerase III su 99.3 1.2E-10 2.6E-15 134.9 18.1 184 727-947 13-233 (397)
163 PRK14954 DNA polymerase III su 99.2 2.6E-10 5.7E-15 138.2 20.6 184 727-947 13-233 (620)
164 COG2812 DnaX DNA polymerase II 99.2 4.5E-11 9.7E-16 141.0 13.2 192 727-949 13-227 (515)
165 PRK14948 DNA polymerase III su 99.2 2E-10 4.4E-15 139.6 18.7 181 727-944 13-224 (620)
166 cd00009 AAA The AAA+ (ATPases 99.2 2.2E-10 4.8E-15 109.8 15.1 122 765-898 19-150 (151)
167 PRK14950 DNA polymerase III su 99.2 3.7E-10 7.9E-15 137.0 20.0 182 727-945 13-224 (585)
168 COG0593 DnaA ATPase involved i 99.2 3.4E-10 7.4E-15 130.3 18.6 196 764-990 112-318 (408)
169 TIGR02640 gas_vesic_GvpN gas v 99.2 3.1E-10 6.7E-15 124.5 17.2 134 766-913 22-198 (262)
170 COG1474 CDC6 Cdc6-related prot 99.1 3.1E-09 6.8E-14 121.9 20.2 220 732-989 19-269 (366)
171 PRK14971 DNA polymerase III su 99.1 2.2E-09 4.8E-14 130.6 19.5 183 727-946 14-226 (614)
172 PRK09087 hypothetical protein; 99.1 1.1E-09 2.4E-14 118.0 15.0 172 766-985 45-222 (226)
173 PRK13407 bchI magnesium chelat 99.1 4.1E-10 8.9E-15 127.6 10.5 162 727-914 5-217 (334)
174 PRK09112 DNA polymerase III su 99.1 5E-09 1.1E-13 119.7 19.2 189 727-947 20-245 (351)
175 CHL00081 chlI Mg-protoporyphyr 99.0 2.1E-09 4.6E-14 122.3 14.8 161 726-913 13-232 (350)
176 PRK05564 DNA polymerase III su 99.0 7.9E-09 1.7E-13 116.1 19.0 171 728-935 2-184 (313)
177 COG1219 ClpX ATP-dependent pro 99.0 7.4E-10 1.6E-14 121.8 10.0 178 672-863 16-203 (408)
178 PHA02244 ATPase-like protein 99.0 2.9E-09 6.4E-14 121.1 14.8 124 766-902 120-263 (383)
179 TIGR01650 PD_CobS cobaltochela 99.0 1.5E-09 3.3E-14 122.0 12.4 140 765-914 64-234 (327)
180 KOG1969 DNA replication checkp 99.0 2.7E-09 5.9E-14 127.2 14.4 168 765-951 326-516 (877)
181 PRK07471 DNA polymerase III su 99.0 7E-09 1.5E-13 119.1 17.5 183 727-943 16-239 (365)
182 COG2607 Predicted ATPase (AAA+ 99.0 8.8E-09 1.9E-13 110.0 16.8 188 726-943 56-274 (287)
183 smart00382 AAA ATPases associa 99.0 2.4E-09 5.2E-14 101.3 11.0 126 766-900 3-147 (148)
184 COG0542 clpA ATP-binding subun 99.0 3.7E-09 8E-14 129.3 14.7 166 727-917 167-350 (786)
185 TIGR00678 holB DNA polymerase 99.0 1E-08 2.2E-13 106.6 15.0 143 764-933 13-183 (188)
186 COG1220 HslU ATP-dependent pro 99.0 1.1E-08 2.5E-13 113.3 16.0 178 732-910 17-346 (444)
187 PF00004 AAA: ATPase family as 98.9 2.5E-09 5.4E-14 102.9 9.1 81 473-591 45-132 (132)
188 COG1224 TIP49 DNA helicase TIP 98.9 4.3E-08 9.4E-13 109.5 19.2 94 879-988 341-435 (450)
189 PF07728 AAA_5: AAA domain (dy 98.9 2.5E-09 5.5E-14 105.3 8.7 112 767-891 1-139 (139)
190 TIGR02030 BchI-ChlI magnesium 98.9 2.8E-08 6E-13 113.0 17.7 159 729-913 3-219 (337)
191 TIGR03015 pepcterm_ATPase puta 98.9 7.5E-08 1.6E-12 104.9 20.1 192 766-986 44-267 (269)
192 TIGR02442 Cob-chelat-sub cobal 98.9 1.9E-08 4.1E-13 123.3 16.4 160 729-914 3-215 (633)
193 PRK07399 DNA polymerase III su 98.9 3.1E-08 6.8E-13 111.7 16.4 183 728-944 2-223 (314)
194 PRK05707 DNA polymerase III su 98.9 4.2E-08 9.1E-13 111.3 17.2 149 764-935 21-197 (328)
195 PRK11331 5-methylcytosine-spec 98.9 1.9E-08 4E-13 117.3 14.1 143 729-899 174-357 (459)
196 COG0470 HolB ATPase involved i 98.9 2.2E-08 4.7E-13 111.4 14.2 148 731-909 2-177 (325)
197 COG0714 MoxR-like ATPases [Gen 98.8 1.1E-08 2.5E-13 115.7 10.7 135 766-912 44-202 (329)
198 PF07724 AAA_2: AAA domain (Cd 98.8 1.4E-08 2.9E-13 105.1 10.2 115 764-881 2-131 (171)
199 PRK08058 DNA polymerase III su 98.8 1E-07 2.2E-12 108.2 17.8 148 728-910 3-179 (329)
200 KOG0991 Replication factor C, 98.8 4.6E-08 1E-12 103.9 13.6 174 727-934 24-207 (333)
201 PF01078 Mg_chelatase: Magnesi 98.8 4.1E-09 8.9E-14 111.5 4.7 45 729-789 2-46 (206)
202 PRK04132 replication factor C 98.8 6E-08 1.3E-12 120.8 15.6 160 764-947 563-736 (846)
203 PF05621 TniB: Bacterial TniB 98.8 2.7E-07 5.9E-12 102.6 18.7 177 766-953 62-272 (302)
204 TIGR00764 lon_rel lon-related 98.8 1.6E-07 3.5E-12 114.5 17.7 51 726-792 14-64 (608)
205 PF06068 TIP49: TIP49 C-termin 98.8 4.9E-08 1.1E-12 110.6 12.1 66 727-801 21-88 (398)
206 TIGR02974 phageshock_pspF psp 98.7 1.4E-07 3E-12 107.2 15.6 169 766-950 23-233 (329)
207 KOG2227 Pre-initiation complex 98.7 5.1E-07 1.1E-11 104.2 20.0 229 731-988 151-418 (529)
208 PRK11608 pspF phage shock prot 98.7 2.6E-07 5.7E-12 104.8 17.4 194 728-949 4-239 (326)
209 KOG1514 Origin recognition com 98.7 3E-07 6.5E-12 110.0 17.5 228 732-989 398-659 (767)
210 KOG0744 AAA+-type ATPase [Post 98.7 1.6E-07 3.5E-12 103.9 13.8 74 171-250 131-204 (423)
211 TIGR01817 nifA Nif-specific re 98.7 1.7E-07 3.6E-12 112.9 15.4 192 727-949 193-427 (534)
212 smart00350 MCM minichromosome 98.7 2.9E-07 6.3E-12 110.3 17.4 167 731-914 204-401 (509)
213 KOG0745 Putative ATP-dependent 98.7 1.9E-07 4.1E-12 106.5 14.7 97 766-862 227-331 (564)
214 PRK12377 putative replication 98.7 8.2E-08 1.8E-12 104.9 11.4 107 716-836 60-175 (248)
215 COG1221 PspF Transcriptional r 98.7 7.5E-08 1.6E-12 111.0 11.4 196 727-951 75-310 (403)
216 TIGR02031 BchD-ChlD magnesium 98.7 1.8E-07 4E-12 113.7 14.9 137 766-914 17-175 (589)
217 PRK15429 formate hydrogenlyase 98.7 1.5E-07 3.2E-12 116.7 14.0 196 727-950 373-609 (686)
218 TIGR02329 propionate_PrpR prop 98.7 1.4E-07 2.9E-12 113.2 13.0 195 727-949 209-449 (526)
219 PRK13531 regulatory ATPase Rav 98.7 1.4E-07 3.1E-12 110.8 12.7 152 732-912 22-193 (498)
220 PRK15424 propionate catabolism 98.7 1.7E-07 3.8E-12 112.4 13.7 195 727-949 216-464 (538)
221 PRK06871 DNA polymerase III su 98.6 1.2E-06 2.7E-11 99.2 19.4 144 735-912 7-178 (325)
222 COG3829 RocR Transcriptional r 98.6 7.4E-08 1.6E-12 113.0 9.7 199 725-948 240-477 (560)
223 TIGR00602 rad24 checkpoint pro 98.6 5.9E-07 1.3E-11 109.5 17.6 193 727-947 81-325 (637)
224 PRK08116 hypothetical protein; 98.6 1.1E-07 2.4E-12 105.1 10.2 129 765-910 114-257 (268)
225 PRK11388 DNA-binding transcrip 98.6 6.2E-07 1.3E-11 110.2 16.8 192 727-949 322-553 (638)
226 COG1239 ChlI Mg-chelatase subu 98.6 3.2E-07 7E-12 105.2 13.1 163 727-915 14-234 (423)
227 PRK05022 anaerobic nitric oxid 98.6 9.3E-07 2E-11 106.0 17.6 196 728-951 185-421 (509)
228 PRK07993 DNA polymerase III su 98.6 1.2E-06 2.5E-11 99.9 17.4 152 763-935 22-198 (334)
229 PF07726 AAA_3: ATPase family 98.6 2.2E-08 4.7E-13 98.6 2.6 113 767-891 1-129 (131)
230 PRK10820 DNA-binding transcrip 98.6 7.6E-07 1.7E-11 107.0 16.2 196 726-949 200-436 (520)
231 PRK07952 DNA replication prote 98.6 3.1E-07 6.7E-12 100.2 11.3 106 717-836 59-174 (244)
232 TIGR00368 Mg chelatase-related 98.6 3.9E-07 8.5E-12 108.6 12.6 146 727-903 189-394 (499)
233 COG2204 AtoC Response regulato 98.6 3.9E-07 8.5E-12 106.8 12.2 200 728-951 139-375 (464)
234 smart00763 AAA_PrkA PrkA AAA d 98.5 1.2E-06 2.6E-11 100.0 15.5 63 728-798 48-118 (361)
235 KOG0742 AAA+-type ATPase [Post 98.5 7.2E-07 1.6E-11 101.0 13.4 98 473-608 430-531 (630)
236 PF13177 DNA_pol3_delta2: DNA 98.5 4.5E-07 9.8E-12 92.9 10.8 133 734-899 1-160 (162)
237 PF00158 Sigma54_activat: Sigm 98.5 7.4E-07 1.6E-11 92.0 12.4 100 766-880 23-144 (168)
238 PRK08769 DNA polymerase III su 98.5 2.1E-06 4.5E-11 97.2 17.0 170 735-939 9-206 (319)
239 COG3604 FhlA Transcriptional r 98.5 4.2E-07 9.2E-12 105.6 11.5 203 725-950 218-456 (550)
240 PRK06964 DNA polymerase III su 98.5 6.1E-07 1.3E-11 102.3 12.7 132 763-911 19-202 (342)
241 PRK06090 DNA polymerase III su 98.5 5.4E-06 1.2E-10 93.9 19.0 144 735-911 8-178 (319)
242 PRK08181 transposase; Validate 98.4 3.4E-07 7.3E-12 101.3 7.8 70 766-837 107-180 (269)
243 TIGR00763 lon ATP-dependent pr 98.4 3.6E-06 7.8E-11 105.7 17.1 98 478-606 408-506 (775)
244 TIGR02915 PEP_resp_reg putativ 98.4 1.5E-06 3.3E-11 101.8 11.7 166 766-950 163-372 (445)
245 KOG2035 Replication factor C, 98.4 1E-05 2.2E-10 88.5 15.9 175 728-933 11-220 (351)
246 KOG1942 DNA helicase, TBP-inte 98.3 9.5E-06 2.1E-10 89.0 15.4 53 729-790 37-89 (456)
247 TIGR02881 spore_V_K stage V sp 98.3 5.9E-06 1.3E-10 90.7 13.9 96 475-607 98-193 (261)
248 KOG0990 Replication factor C, 98.3 5.9E-06 1.3E-10 91.9 13.6 160 726-919 37-209 (360)
249 PRK08699 DNA polymerase III su 98.3 4.7E-06 1E-10 94.7 13.0 132 763-911 19-183 (325)
250 PRK06835 DNA replication prote 98.3 1.4E-06 3E-11 99.1 8.7 69 766-836 184-258 (329)
251 PF01637 Arch_ATPase: Archaeal 98.3 3.1E-06 6.7E-11 88.8 10.6 179 733-935 2-228 (234)
252 PRK08939 primosomal protein Dn 98.3 3E-06 6.6E-11 95.4 10.9 70 765-836 156-229 (306)
253 PRK06526 transposase; Provisio 98.3 8.9E-07 1.9E-11 97.2 6.5 73 762-836 95-171 (254)
254 PF01695 IstB_IS21: IstB-like 98.3 3.6E-07 7.8E-12 95.1 3.2 71 763-835 45-119 (178)
255 COG1484 DnaC DNA replication p 98.3 3.6E-06 7.8E-11 92.5 11.0 71 764-836 104-179 (254)
256 PRK10923 glnG nitrogen regulat 98.3 5.7E-06 1.2E-10 97.8 13.5 190 729-949 137-370 (469)
257 COG0606 Predicted ATPase with 98.3 3.4E-07 7.3E-12 106.4 2.9 48 726-789 175-222 (490)
258 PRK09862 putative ATP-dependen 98.3 9.5E-06 2.1E-10 96.8 14.8 145 728-903 189-391 (506)
259 PRK11361 acetoacetate metaboli 98.2 1E-05 2.2E-10 95.2 14.2 165 766-949 167-375 (457)
260 PF03215 Rad17: Rad17 cell cyc 98.2 2E-05 4.4E-10 94.6 16.3 200 727-951 16-269 (519)
261 TIGR02880 cbbX_cfxQ probable R 98.2 6.2E-06 1.3E-10 92.0 11.1 99 474-608 113-211 (284)
262 PF13173 AAA_14: AAA domain 98.2 2.8E-06 6.1E-11 83.2 7.1 69 766-836 3-73 (128)
263 PRK09183 transposase/IS protei 98.2 3.5E-06 7.6E-11 92.8 8.5 72 764-836 101-176 (259)
264 PF14532 Sigma54_activ_2: Sigm 98.2 1.8E-06 3.8E-11 85.7 5.4 105 766-900 22-136 (138)
265 KOG2680 DNA helicase TIP49, TB 98.2 6.8E-05 1.5E-09 82.7 17.5 95 879-989 338-433 (454)
266 PTZ00111 DNA replication licen 98.2 5.7E-06 1.2E-10 103.3 10.5 170 731-913 451-657 (915)
267 PRK05201 hslU ATP-dependent pr 98.2 0.00012 2.5E-09 85.4 20.4 67 190-260 21-87 (443)
268 KOG1051 Chaperone HSP104 and r 98.2 1.1E-05 2.3E-10 100.7 12.7 127 731-879 563-710 (898)
269 PF13401 AAA_22: AAA domain; P 98.2 1.2E-05 2.6E-10 77.7 10.2 72 766-837 5-100 (131)
270 PRK06921 hypothetical protein; 98.1 5E-06 1.1E-10 91.9 8.1 68 765-835 117-188 (266)
271 PRK05342 clpX ATP-dependent pr 98.1 4.7E-05 1E-09 89.2 16.4 83 161-260 63-145 (412)
272 TIGR00390 hslU ATP-dependent p 98.1 0.00019 4.1E-09 83.6 20.4 68 189-260 17-84 (441)
273 PRK13765 ATP-dependent proteas 98.1 3.8E-05 8.3E-10 94.1 15.5 48 727-790 28-75 (637)
274 TIGR01818 ntrC nitrogen regula 98.1 2E-05 4.3E-10 92.9 12.5 166 766-950 158-367 (463)
275 cd01120 RecA-like_NTPases RecA 98.1 2.8E-05 6E-10 76.8 11.0 72 768-839 2-100 (165)
276 PRK15115 response regulator Gl 98.0 6.2E-05 1.3E-09 88.4 14.5 165 766-949 158-366 (444)
277 PF05729 NACHT: NACHT domain 98.0 3.2E-05 6.9E-10 77.1 9.4 140 767-915 2-165 (166)
278 PRK00080 ruvB Holliday junctio 98.0 0.00015 3.2E-09 82.4 15.9 60 563-623 151-210 (328)
279 PRK13406 bchD magnesium chelat 97.9 3E-05 6.6E-10 94.3 9.0 124 766-904 26-173 (584)
280 TIGR00635 ruvB Holliday juncti 97.9 0.00021 4.5E-09 79.8 15.0 60 563-623 130-189 (305)
281 TIGR00382 clpX endopeptidase C 97.9 0.00014 3.1E-09 85.0 14.0 83 161-260 69-153 (413)
282 PRK05917 DNA polymerase III su 97.8 0.00024 5.1E-09 79.6 14.3 118 763-900 17-154 (290)
283 PF03969 AFG1_ATPase: AFG1-lik 97.8 8.6E-05 1.9E-09 85.6 11.0 103 762-880 59-168 (362)
284 CHL00181 cbbX CbbX; Provisiona 97.8 0.0001 2.3E-09 82.4 11.0 98 475-608 115-212 (287)
285 PF12775 AAA_7: P-loop contain 97.8 1.2E-05 2.5E-10 89.3 3.2 140 765-915 33-195 (272)
286 PF12774 AAA_6: Hydrolytic ATP 97.8 0.00015 3.2E-09 78.9 11.3 128 766-909 33-176 (231)
287 PF00931 NB-ARC: NB-ARC domain 97.8 0.00018 3.9E-09 79.0 12.2 156 764-941 18-201 (287)
288 PRK10365 transcriptional regul 97.8 0.00029 6.3E-09 82.5 14.3 165 766-949 163-371 (441)
289 PRK07276 DNA polymerase III su 97.8 0.0012 2.5E-08 74.2 18.0 150 763-944 22-199 (290)
290 PRK05818 DNA polymerase III su 97.7 0.00058 1.3E-08 75.2 14.8 121 762-900 4-147 (261)
291 KOG0478 DNA replication licens 97.7 0.00045 9.7E-09 83.3 14.0 171 732-914 431-627 (804)
292 KOG2228 Origin recognition com 97.7 0.00018 3.8E-09 80.9 9.7 160 732-913 26-219 (408)
293 KOG1970 Checkpoint RAD17-RFC c 97.7 0.0013 2.9E-08 77.9 17.2 172 766-950 111-320 (634)
294 COG1241 MCM2 Predicted ATPase 97.7 0.00019 4.1E-09 88.0 10.9 171 731-915 287-485 (682)
295 TIGR02237 recomb_radB DNA repa 97.7 0.00035 7.7E-09 73.7 11.6 77 762-838 9-111 (209)
296 cd01124 KaiC KaiC is a circadi 97.7 0.00042 9.2E-09 71.2 11.9 71 768-838 2-109 (187)
297 TIGR01618 phage_P_loop phage n 97.6 0.00011 2.3E-09 79.3 7.2 22 765-786 12-33 (220)
298 PLN03210 Resistant to P. syrin 97.6 0.00075 1.6E-08 88.8 15.6 173 727-935 181-389 (1153)
299 COG3267 ExeA Type II secretory 97.5 0.0023 4.9E-08 70.1 15.8 174 767-952 53-255 (269)
300 PRK07132 DNA polymerase III su 97.5 0.0011 2.5E-08 74.6 13.6 123 765-911 18-160 (299)
301 COG1618 Predicted nucleotide k 97.5 0.0014 3E-08 67.4 12.7 25 765-789 5-29 (179)
302 KOG2170 ATPase of the AAA+ sup 97.5 0.0017 3.7E-08 72.3 14.0 131 732-881 84-226 (344)
303 COG3283 TyrR Transcriptional r 97.4 0.0011 2.5E-08 74.9 12.1 195 726-948 200-430 (511)
304 PHA00729 NTP-binding motif con 97.4 0.00027 5.9E-09 76.4 7.0 27 766-792 18-44 (226)
305 PRK11823 DNA repair protein Ra 97.4 0.0013 2.7E-08 78.2 12.7 78 762-839 77-171 (446)
306 PRK00771 signal recognition pa 97.4 0.01 2.3E-07 70.3 20.1 197 764-986 94-333 (437)
307 PF14516 AAA_35: AAA-like doma 97.4 0.0028 6E-08 72.4 14.8 167 764-944 30-241 (331)
308 cd01121 Sms Sms (bacterial rad 97.4 0.0015 3.4E-08 75.7 12.9 78 762-839 79-173 (372)
309 PF00493 MCM: MCM2/3/5 family 97.4 0.00016 3.5E-09 82.4 4.6 163 731-916 25-224 (331)
310 PRK09361 radB DNA repair and r 97.3 0.0015 3.3E-08 69.9 11.6 77 762-839 20-122 (225)
311 TIGR02012 tigrfam_recA protein 97.3 0.0011 2.5E-08 75.3 11.1 78 762-839 52-148 (321)
312 PF13207 AAA_17: AAA domain; P 97.3 0.00023 4.9E-09 68.2 4.2 31 768-798 2-32 (121)
313 KOG2383 Predicted ATPase [Gene 97.3 0.002 4.4E-08 74.0 12.1 203 762-997 111-366 (467)
314 PF00910 RNA_helicase: RNA hel 97.3 0.00028 6E-09 67.4 4.6 23 768-790 1-23 (107)
315 PF05496 RuvB_N: Holliday junc 97.2 0.00083 1.8E-08 72.6 7.9 88 486-603 102-190 (233)
316 PHA02624 large T antigen; Prov 97.2 0.00048 1E-08 83.2 6.2 38 763-800 429-466 (647)
317 PRK04841 transcriptional regul 97.2 0.0055 1.2E-07 78.1 15.9 154 765-936 32-220 (903)
318 KOG1968 Replication factor C, 97.2 0.00051 1.1E-08 86.6 6.4 162 767-947 359-533 (871)
319 cd00983 recA RecA is a bacter 97.2 0.0018 4E-08 73.7 10.3 78 762-839 52-148 (325)
320 PRK08533 flagellar accessory p 97.1 0.004 8.7E-08 67.6 11.9 76 762-837 21-130 (230)
321 TIGR03877 thermo_KaiC_1 KaiC d 97.1 0.0049 1.1E-07 66.9 12.5 40 759-799 16-58 (237)
322 PRK08118 topology modulation p 97.1 0.001 2.2E-08 68.6 6.4 32 767-798 3-34 (167)
323 PRK00131 aroK shikimate kinase 97.1 0.00059 1.3E-08 69.0 4.6 33 764-796 3-35 (175)
324 PF05707 Zot: Zonular occluden 97.1 0.00097 2.1E-08 70.2 6.3 120 768-897 3-143 (193)
325 cd01394 radB RadB. The archaea 97.0 0.0052 1.1E-07 65.4 11.6 75 762-837 16-116 (218)
326 PRK10787 DNA-binding ATP-depen 97.0 0.0061 1.3E-07 77.1 14.0 42 563-606 466-507 (784)
327 PRK06067 flagellar accessory p 97.0 0.0047 1E-07 66.7 11.2 76 762-837 22-133 (234)
328 PF13191 AAA_16: AAA ATPase do 97.0 0.0021 4.6E-08 65.5 8.1 59 732-801 2-63 (185)
329 KOG0482 DNA replication licens 97.0 0.0018 4E-08 75.8 8.2 210 731-948 343-587 (721)
330 KOG1051 Chaperone HSP104 and r 97.0 0.0043 9.2E-08 78.2 11.9 139 766-915 209-365 (898)
331 COG5271 MDN1 AAA ATPase contai 97.0 0.0022 4.7E-08 82.7 9.0 134 766-913 1544-1703(4600)
332 cd01129 PulE-GspE PulE/GspE Th 97.0 0.002 4.3E-08 71.5 8.0 94 727-835 57-160 (264)
333 PRK12724 flagellar biosynthesi 96.9 0.03 6.5E-07 65.9 17.7 36 765-800 223-262 (432)
334 PRK07261 topology modulation p 96.9 0.0017 3.7E-08 67.2 6.7 33 767-799 2-34 (171)
335 TIGR01425 SRP54_euk signal rec 96.9 0.069 1.5E-06 63.2 20.4 199 764-986 99-340 (429)
336 PRK05800 cobU adenosylcobinami 96.9 0.0081 1.8E-07 62.4 11.2 69 767-839 3-91 (170)
337 PRK09354 recA recombinase A; P 96.9 0.0058 1.3E-07 70.3 10.9 77 762-838 57-152 (349)
338 cd01393 recA_like RecA is a b 96.9 0.0074 1.6E-07 64.3 11.2 39 762-800 16-63 (226)
339 PF06745 KaiC: KaiC; InterPro 96.9 0.01 2.2E-07 63.6 12.2 96 762-861 16-148 (226)
340 PRK10536 hypothetical protein; 96.8 0.0059 1.3E-07 67.4 10.2 22 767-788 76-97 (262)
341 PF13671 AAA_33: AAA domain; P 96.8 0.0027 5.8E-08 62.4 6.8 28 768-795 2-29 (143)
342 cd01123 Rad51_DMC1_radA Rad51_ 96.8 0.008 1.7E-07 64.4 11.0 114 762-877 16-167 (235)
343 PF03266 NTPase_1: NTPase; In 96.8 0.00069 1.5E-08 70.2 2.6 23 767-789 1-23 (168)
344 KOG0480 DNA replication licens 96.8 0.021 4.5E-07 69.0 14.9 175 729-917 344-546 (764)
345 PF13604 AAA_30: AAA domain; P 96.8 0.0028 6E-08 67.1 6.9 98 766-879 19-132 (196)
346 PRK14962 DNA polymerase III su 96.8 0.023 5.1E-07 68.0 15.4 90 485-623 117-206 (472)
347 COG1485 Predicted ATPase [Gene 96.8 0.011 2.4E-07 67.5 11.8 28 763-790 63-90 (367)
348 COG1373 Predicted ATPase (AAA+ 96.7 0.018 3.8E-07 67.6 14.0 121 767-907 39-161 (398)
349 TIGR03878 thermo_KaiC_2 KaiC d 96.7 0.014 3.1E-07 64.4 12.4 38 762-799 33-73 (259)
350 PRK09376 rho transcription ter 96.7 0.0064 1.4E-07 70.7 9.9 73 766-838 170-270 (416)
351 TIGR00416 sms DNA repair prote 96.7 0.012 2.6E-07 70.1 12.6 77 762-838 91-184 (454)
352 KOG2543 Origin recognition com 96.7 0.017 3.6E-07 66.4 12.9 59 732-801 8-66 (438)
353 COG3284 AcoR Transcriptional a 96.7 0.0027 5.9E-08 76.6 7.0 169 766-949 337-539 (606)
354 PRK15455 PrkA family serine pr 96.7 0.0018 3.9E-08 78.1 5.5 64 727-798 73-137 (644)
355 PHA02774 E1; Provisional 96.7 0.022 4.8E-07 69.0 14.3 34 765-798 434-468 (613)
356 cd01122 GP4d_helicase GP4d_hel 96.7 0.012 2.7E-07 64.5 11.5 37 762-798 27-67 (271)
357 PRK00411 cdc6 cell division co 96.7 0.011 2.3E-07 68.5 11.5 111 473-623 125-239 (394)
358 cd00046 DEXDc DEAD-like helica 96.7 0.0047 1E-07 58.3 7.2 23 767-789 2-24 (144)
359 PRK13947 shikimate kinase; Pro 96.7 0.0016 3.5E-08 66.3 4.1 31 767-797 3-33 (171)
360 cd01131 PilT Pilus retraction 96.7 0.0029 6.3E-08 66.9 6.1 68 767-834 3-84 (198)
361 PRK10867 signal recognition pa 96.6 0.091 2E-06 62.4 19.0 73 764-836 99-195 (433)
362 PRK14974 cell division protein 96.6 0.016 3.6E-07 66.4 12.3 35 765-799 140-177 (336)
363 PRK03839 putative kinase; Prov 96.6 0.0016 3.6E-08 67.2 3.9 31 767-797 2-32 (180)
364 COG5271 MDN1 AAA ATPase contai 96.6 0.0074 1.6E-07 78.2 9.8 137 766-913 889-1047(4600)
365 cd00544 CobU Adenosylcobinamid 96.6 0.013 2.8E-07 60.9 10.2 71 768-840 2-89 (169)
366 cd00984 DnaB_C DnaB helicase C 96.6 0.023 4.9E-07 61.2 12.6 38 762-799 10-51 (242)
367 TIGR02688 conserved hypothetic 96.6 0.0033 7.1E-08 73.6 6.4 63 763-837 207-273 (449)
368 PRK13695 putative NTPase; Prov 96.6 0.01 2.2E-07 61.2 9.3 23 767-789 2-24 (174)
369 cd00464 SK Shikimate kinase (S 96.6 0.002 4.3E-08 64.2 4.0 31 767-797 1-31 (154)
370 PRK04296 thymidine kinase; Pro 96.6 0.012 2.7E-07 61.8 10.1 69 767-836 4-90 (190)
371 KOG0743 AAA+-type ATPase [Post 96.6 0.006 1.3E-07 71.3 8.3 75 177-256 185-268 (457)
372 cd03283 ABC_MutS-like MutS-lik 96.6 0.01 2.2E-07 63.1 9.5 69 766-835 26-116 (199)
373 PRK04328 hypothetical protein; 96.6 0.021 4.6E-07 62.6 12.3 37 762-798 20-59 (249)
374 PF06309 Torsin: Torsin; Inte 96.6 0.013 2.8E-07 58.2 9.4 52 731-789 26-77 (127)
375 COG4650 RtcR Sigma54-dependent 96.5 0.0036 7.9E-08 69.2 5.8 73 766-838 209-296 (531)
376 PRK14722 flhF flagellar biosyn 96.5 0.0055 1.2E-07 71.1 7.6 110 764-887 136-266 (374)
377 cd01128 rho_factor Transcripti 96.5 0.016 3.4E-07 63.9 10.6 27 765-791 16-42 (249)
378 KOG3347 Predicted nucleotide k 96.5 0.0021 4.7E-08 65.1 3.5 32 766-797 8-39 (176)
379 PRK13948 shikimate kinase; Pro 96.5 0.0046 1E-07 65.0 6.1 36 762-797 7-42 (182)
380 PRK00625 shikimate kinase; Pro 96.5 0.0026 5.7E-08 66.2 4.2 31 767-797 2-32 (173)
381 TIGR00362 DnaA chromosomal rep 96.5 0.011 2.3E-07 69.3 9.6 98 485-623 199-298 (405)
382 PF00437 T2SE: Type II/IV secr 96.5 0.0041 8.9E-08 68.5 5.8 98 726-835 100-208 (270)
383 TIGR01359 UMP_CMP_kin_fam UMP- 96.4 0.0025 5.4E-08 65.7 3.8 34 768-803 2-35 (183)
384 TIGR03880 KaiC_arch_3 KaiC dom 96.4 0.035 7.6E-07 59.4 12.8 38 762-799 13-53 (224)
385 TIGR03881 KaiC_arch_4 KaiC dom 96.4 0.036 7.7E-07 59.4 12.7 37 762-798 17-56 (229)
386 PTZ00112 origin recognition co 96.4 0.022 4.7E-07 71.6 12.2 94 473-607 855-951 (1164)
387 PRK14532 adenylate kinase; Pro 96.4 0.0028 6.1E-08 65.9 4.0 36 767-804 2-37 (188)
388 TIGR02533 type_II_gspE general 96.4 0.0087 1.9E-07 71.9 8.6 96 725-835 217-322 (486)
389 TIGR02858 spore_III_AA stage I 96.4 0.0051 1.1E-07 68.5 6.1 69 766-834 112-204 (270)
390 PF00448 SRP54: SRP54-type pro 96.4 0.0084 1.8E-07 63.7 7.5 108 765-884 1-131 (196)
391 PRK04195 replication factor C 96.4 0.037 8.1E-07 66.4 13.9 62 180-257 12-73 (482)
392 PRK12723 flagellar biosynthesi 96.4 0.026 5.7E-07 66.0 12.1 113 765-891 174-309 (388)
393 PF07693 KAP_NTPase: KAP famil 96.3 0.21 4.6E-06 56.1 18.8 28 763-790 18-45 (325)
394 COG2804 PulE Type II secretory 96.3 0.0065 1.4E-07 72.1 6.9 109 712-835 220-338 (500)
395 PRK06762 hypothetical protein; 96.3 0.0087 1.9E-07 60.8 7.0 37 766-802 3-39 (166)
396 KOG0477 DNA replication licens 96.3 0.011 2.4E-07 71.0 8.6 150 731-898 450-630 (854)
397 PRK06645 DNA polymerase III su 96.3 0.053 1.1E-06 65.5 14.6 86 474-607 113-202 (507)
398 PRK13949 shikimate kinase; Pro 96.3 0.0034 7.4E-08 64.9 3.9 32 766-797 2-33 (169)
399 cd02020 CMPK Cytidine monophos 96.3 0.0035 7.6E-08 61.6 3.8 30 768-797 2-31 (147)
400 PRK14531 adenylate kinase; Pro 96.3 0.0039 8.5E-08 64.9 4.3 30 766-795 3-32 (183)
401 TIGR02928 orc1/cdc6 family rep 96.3 0.025 5.3E-07 64.8 11.2 93 473-606 116-213 (365)
402 PRK10436 hypothetical protein; 96.3 0.01 2.2E-07 70.9 8.2 102 719-835 187-298 (462)
403 TIGR02525 plasmid_TraJ plasmid 96.3 0.0086 1.9E-07 69.6 7.4 69 767-835 151-236 (372)
404 PRK06217 hypothetical protein; 96.3 0.0039 8.5E-08 64.9 4.2 31 767-797 3-33 (183)
405 cd01428 ADK Adenylate kinase ( 96.2 0.0037 7.9E-08 64.8 3.8 33 768-802 2-34 (194)
406 PRK06581 DNA polymerase III su 96.2 0.26 5.7E-06 54.2 17.8 170 766-956 16-200 (263)
407 COG5245 DYN1 Dynein, heavy cha 96.2 0.026 5.7E-07 73.0 11.5 141 763-916 1492-1661(3164)
408 PRK05973 replicative DNA helic 96.2 0.029 6.2E-07 61.5 10.5 38 762-799 61-101 (237)
409 TIGR02782 TrbB_P P-type conjug 96.2 0.011 2.3E-07 66.9 7.4 70 766-835 133-215 (299)
410 PF04665 Pox_A32: Poxvirus A32 96.2 0.061 1.3E-06 59.1 12.9 133 762-911 10-168 (241)
411 cd03281 ABC_MSH5_euk MutS5 hom 96.2 0.033 7.1E-07 59.9 10.7 22 766-787 30-51 (213)
412 smart00487 DEXDc DEAD-like hel 96.2 0.043 9.2E-07 55.2 11.0 33 766-798 25-62 (201)
413 COG3854 SpoIIIAA ncharacterize 96.2 0.011 2.3E-07 64.0 6.8 71 766-836 138-230 (308)
414 PRK13764 ATPase; Provisional 96.2 0.0095 2.1E-07 72.9 7.3 70 765-835 257-335 (602)
415 cd02021 GntK Gluconate kinase 96.2 0.0045 9.7E-08 61.8 3.8 28 768-795 2-29 (150)
416 PRK14530 adenylate kinase; Pro 96.1 0.0051 1.1E-07 65.7 4.3 30 767-796 5-34 (215)
417 TIGR01420 pilT_fam pilus retra 96.1 0.0087 1.9E-07 68.7 6.2 69 766-834 123-205 (343)
418 TIGR02538 type_IV_pilB type IV 96.1 0.013 2.8E-07 71.8 8.0 95 726-835 292-396 (564)
419 PRK11889 flhF flagellar biosyn 96.1 0.065 1.4E-06 62.7 13.1 35 765-799 241-278 (436)
420 cd00227 CPT Chloramphenicol (C 96.1 0.0048 1E-07 63.6 3.6 34 766-799 3-36 (175)
421 smart00534 MUTSac ATPase domai 96.1 0.049 1.1E-06 56.9 11.2 19 768-786 2-20 (185)
422 TIGR01313 therm_gnt_kin carboh 96.0 0.0051 1.1E-07 62.3 3.3 28 768-795 1-28 (163)
423 TIGR02655 circ_KaiC circadian 96.0 0.047 1E-06 65.7 12.0 77 762-838 260-367 (484)
424 COG0563 Adk Adenylate kinase a 96.0 0.0063 1.4E-07 63.7 4.0 33 767-801 2-34 (178)
425 PRK08233 hypothetical protein; 96.0 0.04 8.8E-07 56.3 9.9 32 766-797 4-36 (182)
426 PRK04301 radA DNA repair and r 96.0 0.046 1E-06 62.1 11.2 39 762-800 99-146 (317)
427 PF13479 AAA_24: AAA domain 96.0 0.03 6.6E-07 59.9 9.2 67 766-836 4-80 (213)
428 TIGR02236 recomb_radA DNA repa 96.0 0.052 1.1E-06 61.2 11.6 39 762-800 92-139 (310)
429 PRK03731 aroL shikimate kinase 96.0 0.0074 1.6E-07 61.7 4.3 32 766-797 3-34 (171)
430 COG0703 AroK Shikimate kinase 96.0 0.0057 1.2E-07 63.7 3.5 32 766-797 3-34 (172)
431 PRK06547 hypothetical protein; 96.0 0.0072 1.6E-07 62.9 4.3 34 764-797 14-47 (172)
432 TIGR01360 aden_kin_iso1 adenyl 95.9 0.0076 1.7E-07 62.0 4.4 30 766-795 4-33 (188)
433 PTZ00088 adenylate kinase 1; P 95.9 0.0074 1.6E-07 65.7 4.5 31 766-796 7-37 (229)
434 cd03280 ABC_MutS2 MutS2 homolo 95.9 0.053 1.1E-06 57.3 10.8 22 766-787 29-50 (200)
435 PF13481 AAA_25: AAA domain; P 95.9 0.024 5.2E-07 58.7 8.1 76 764-839 31-156 (193)
436 PRK14528 adenylate kinase; Pro 95.9 0.0072 1.6E-07 63.3 4.1 31 766-796 2-32 (186)
437 PTZ00202 tuzin; Provisional 95.9 0.092 2E-06 62.1 13.3 59 730-799 262-320 (550)
438 cd03243 ABC_MutS_homologs The 95.9 0.067 1.5E-06 56.6 11.4 22 765-786 29-50 (202)
439 PRK13900 type IV secretion sys 95.9 0.018 3.8E-07 66.1 7.3 71 765-835 160-246 (332)
440 COG2909 MalT ATP-dependent tra 95.8 0.074 1.6E-06 66.5 12.7 161 764-942 36-235 (894)
441 PRK10416 signal recognition pa 95.8 0.14 3E-06 58.5 14.3 36 764-799 113-151 (318)
442 cd02027 APSK Adenosine 5'-phos 95.8 0.026 5.5E-07 57.1 7.4 34 768-801 2-38 (149)
443 PRK09519 recA DNA recombinatio 95.8 0.05 1.1E-06 68.4 11.5 77 762-838 57-152 (790)
444 PRK13946 shikimate kinase; Pro 95.8 0.0077 1.7E-07 62.9 3.8 32 766-797 11-42 (184)
445 PLN02200 adenylate kinase fami 95.8 0.0095 2.1E-07 64.9 4.6 39 763-803 41-79 (234)
446 PRK08154 anaerobic benzoate ca 95.8 0.014 2.9E-07 66.2 5.9 36 761-796 129-164 (309)
447 COG1066 Sms Predicted ATP-depe 95.8 0.067 1.5E-06 62.3 11.3 98 762-859 90-205 (456)
448 PF02562 PhoH: PhoH-like prote 95.7 0.02 4.4E-07 61.4 6.7 23 767-789 21-43 (205)
449 PF09336 Vps4_C: Vps4 C termin 95.7 0.007 1.5E-07 52.9 2.6 35 971-1007 28-62 (62)
450 PRK05057 aroK shikimate kinase 95.7 0.0098 2.1E-07 61.6 4.2 33 766-798 5-37 (172)
451 COG1102 Cmk Cytidylate kinase 95.7 0.0084 1.8E-07 61.7 3.5 28 768-795 3-30 (179)
452 COG4088 Predicted nucleotide k 95.7 0.036 7.8E-07 59.3 8.3 22 768-789 4-25 (261)
453 TIGR01351 adk adenylate kinase 95.7 0.0084 1.8E-07 63.8 3.8 29 768-796 2-30 (210)
454 PF08433 KTI12: Chromatin asso 95.7 0.033 7.1E-07 62.2 8.5 68 768-836 4-82 (270)
455 PRK00149 dnaA chromosomal repl 95.7 0.03 6.6E-07 66.5 8.8 98 485-623 211-310 (450)
456 PRK02496 adk adenylate kinase; 95.7 0.0096 2.1E-07 61.7 4.0 30 767-796 3-32 (184)
457 TIGR01448 recD_rel helicase, p 95.7 0.043 9.2E-07 69.1 10.3 101 767-884 340-459 (720)
458 PF09848 DUF2075: Uncharacteri 95.7 0.019 4.2E-07 66.0 6.7 23 767-789 3-25 (352)
459 PF13238 AAA_18: AAA domain; P 95.6 0.009 2E-07 57.1 3.3 22 768-789 1-22 (129)
460 TIGR02238 recomb_DMC1 meiotic 95.6 0.063 1.4E-06 61.1 10.6 78 762-839 93-206 (313)
461 cd01130 VirB11-like_ATPase Typ 95.6 0.019 4.2E-07 60.0 6.0 70 765-834 25-110 (186)
462 PRK00279 adk adenylate kinase; 95.6 0.0099 2.1E-07 63.4 3.9 30 767-796 2-31 (215)
463 PF00308 Bac_DnaA: Bacterial d 95.6 0.1 2.2E-06 56.3 11.6 98 485-623 97-196 (219)
464 KOG0479 DNA replication licens 95.6 0.044 9.4E-07 65.7 9.2 167 731-913 302-498 (818)
465 PRK04040 adenylate kinase; Pro 95.6 0.012 2.7E-07 61.9 4.4 31 765-795 2-34 (188)
466 PRK14527 adenylate kinase; Pro 95.6 0.01 2.2E-07 62.1 3.7 32 764-795 5-36 (191)
467 PLN03187 meiotic recombination 95.6 0.087 1.9E-06 60.8 11.4 80 759-839 121-236 (344)
468 PF06414 Zeta_toxin: Zeta toxi 95.6 0.034 7.3E-07 58.7 7.6 67 763-829 13-98 (199)
469 TIGR00064 ftsY signal recognit 95.6 0.29 6.3E-06 54.7 15.2 36 764-799 71-109 (272)
470 TIGR03574 selen_PSTK L-seryl-t 95.6 0.032 6.8E-07 61.0 7.5 34 768-801 2-38 (249)
471 TIGR01650 PD_CobS cobaltochela 95.5 0.19 4.1E-06 57.6 13.8 35 221-257 64-98 (327)
472 PF10443 RNA12: RNA12 protein; 95.5 0.37 8.1E-06 56.8 16.3 104 882-985 198-332 (431)
473 COG0541 Ffh Signal recognition 95.5 1.1 2.3E-05 53.0 19.8 203 763-986 98-340 (451)
474 PRK06696 uridine kinase; Valid 95.5 0.028 6.2E-07 60.4 6.8 38 765-802 22-62 (223)
475 PRK14086 dnaA chromosomal repl 95.4 0.051 1.1E-06 66.7 9.4 99 484-623 376-476 (617)
476 PRK13894 conjugal transfer ATP 95.4 0.025 5.4E-07 64.6 6.4 71 765-835 148-230 (319)
477 PRK09302 circadian clock prote 95.4 0.11 2.4E-06 62.8 12.3 77 762-838 28-144 (509)
478 cd00561 CobA_CobO_BtuR ATP:cor 95.4 0.22 4.8E-06 51.5 12.6 22 768-789 5-26 (159)
479 PF13521 AAA_28: AAA domain; P 95.4 0.015 3.2E-07 59.1 4.0 27 768-795 2-28 (163)
480 TIGR02788 VirB11 P-type DNA tr 95.4 0.018 4E-07 65.1 5.1 73 763-835 142-229 (308)
481 PF08423 Rad51: Rad51; InterP 95.4 0.072 1.6E-06 58.9 9.5 114 762-877 35-185 (256)
482 PRK04182 cytidylate kinase; Pr 95.4 0.015 3.2E-07 59.3 3.9 29 767-795 2-30 (180)
483 cd03115 SRP The signal recogni 95.4 0.061 1.3E-06 55.1 8.4 33 768-800 3-38 (173)
484 cd03216 ABC_Carb_Monos_I This 95.3 0.066 1.4E-06 54.8 8.6 74 762-835 23-111 (163)
485 PF13245 AAA_19: Part of AAA d 95.3 0.025 5.5E-07 51.1 4.9 23 767-789 12-35 (76)
486 TIGR02239 recomb_RAD51 DNA rep 95.3 0.084 1.8E-06 60.2 10.2 39 762-800 93-140 (316)
487 PF00406 ADK: Adenylate kinase 95.3 0.015 3.3E-07 58.4 3.7 33 770-804 1-33 (151)
488 PRK13851 type IV secretion sys 95.3 0.018 4E-07 66.2 4.8 71 764-834 161-246 (344)
489 TIGR00767 rho transcription te 95.3 0.057 1.2E-06 63.2 8.7 27 764-790 167-193 (415)
490 TIGR02173 cyt_kin_arch cytidyl 95.3 0.016 3.5E-07 58.7 3.8 28 768-795 3-30 (171)
491 PRK09302 circadian clock prote 95.3 0.15 3.3E-06 61.6 12.7 77 762-838 270-377 (509)
492 PLN03186 DNA repair protein RA 95.3 0.091 2E-06 60.6 10.3 114 762-877 120-270 (342)
493 PTZ00035 Rad51 protein; Provis 95.3 0.12 2.7E-06 59.4 11.3 39 762-800 115-162 (337)
494 PRK13833 conjugal transfer pro 95.3 0.026 5.7E-07 64.4 5.8 69 766-834 145-225 (323)
495 PF13086 AAA_11: AAA domain; P 95.2 0.014 3E-07 61.3 3.3 22 768-789 20-41 (236)
496 COG2874 FlaH Predicted ATPases 95.2 0.15 3.3E-06 54.9 11.0 118 762-891 25-178 (235)
497 PRK14730 coaE dephospho-CoA ki 95.2 0.047 1E-06 57.9 7.3 51 767-819 3-56 (195)
498 PF01745 IPT: Isopentenyl tran 95.2 0.019 4.1E-07 61.7 4.3 37 767-803 3-39 (233)
499 TIGR03499 FlhF flagellar biosy 95.2 0.086 1.9E-06 59.1 9.7 37 764-800 193-234 (282)
500 TIGR02655 circ_KaiC circadian 95.2 0.16 3.5E-06 61.1 12.7 78 759-837 16-133 (484)
No 1
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-75 Score=661.21 Aligned_cols=471 Identities=27% Similarity=0.408 Sum_probs=376.2
Q ss_pred HHHHHHHHHhhcCCeEEEEcCchhhhhcccCCccH----HHHHHHHHHHHhcCCCCEEEEecccCCCCCccccccccccc
Q 001735 473 AMEALCEVLHSTQPLIVYFPDSSLWLSRAVPRCNR----KEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMIL 548 (1019)
Q Consensus 473 ~i~~L~e~~~~~~p~Iiff~eid~~~~~~~~~~~~----~~~~s~~~~~l~~l~g~v~vI~~~~~~d~~~~~~~~~~~~~ 548 (1019)
.|..||+.|+++.|.||||||||-+. ++++.-+ .+||+.|++.||.+.-.- ..++
T Consensus 270 kiRelF~~A~~~aPcivFiDeIDAI~--pkRe~aqreMErRiVaQLlt~mD~l~~~~---------~~g~---------- 328 (802)
T KOG0733|consen 270 KIRELFDQAKSNAPCIVFIDEIDAIT--PKREEAQREMERRIVAQLLTSMDELSNEK---------TKGD---------- 328 (802)
T ss_pred HHHHHHHHHhccCCeEEEeecccccc--cchhhHHHHHHHHHHHHHHHhhhcccccc---------cCCC----------
Confidence 68899999999999999999999885 4444333 467888888888774110 0000
Q ss_pred cccccccCCCCchhhhhcccccCCCcchHHHHh--cccceEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHh
Q 001735 549 PNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLE 626 (1019)
Q Consensus 549 ~~~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~r--rFe~~~eI~LPdee~Rl~Il~Iht~k~~~~~~~~~~v~~l~~~l~ 626 (1019)
..||||+|||||.+|+||+| |||++|.++.|++.+|..||.+..++++-.. +-++.+|++ .
T Consensus 329 -------------~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g--~~d~~qlA~--l 391 (802)
T KOG0733|consen 329 -------------PVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG--DFDFKQLAK--L 391 (802)
T ss_pred -------------CeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC--CcCHHHHHh--c
Confidence 03567999999999999999 9999999999999999999999976666544 445777777 8
Q ss_pred hccCCccccccccccchhhhHHhhhhHHhh---hcc---cc----cc---cCCC----------C----------Ccc--
Q 001735 627 DHELSCTDLLHVNTDGVILTKQRAEKVVGW---AKN---HY----LS---SCSF----------P----------SVK-- 671 (1019)
Q Consensus 627 t~~~~gaDL~~Lct~~~~~s~~~~~~~V~~---A~s---~~----l~---~~~~----------~----------~v~-- 671 (1019)
|.||.||||.+||.+|+...+.++-..... ..+ -+ .+ ++++ + ..+
T Consensus 392 TPGfVGADL~AL~~~Aa~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~ 471 (802)
T KOG0733|consen 392 TPGFVGADLMALCREAAFVAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPL 471 (802)
T ss_pred CCCccchhHHHHHHHHHHHHHHHHhhcccCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCc
Confidence 999999999999999887765554332210 000 00 00 0000 0 000
Q ss_pred ----CCceeecHHHHHHHHHHhhhhhhccCCCcccccccchhhhhhhhcccccCCCCCCcccccccChHHHHHHHHHHHH
Q 001735 672 ----GQRLHLPRESLEIAILRLKEQETASRKPTQNLKNLAKDEYESNFVSAVVPPGEIGVRFDDIGALEDVKKALNELVI 747 (1019)
Q Consensus 672 ----~~kv~V~~~df~~Al~~l~p~~~~~~~~~~~l~~~~~~e~e~~~~~~ii~~~e~~vtfdDIgGle~vk~~L~e~V~ 747 (1019)
...+.|..+||..|+..++|+.. +.+++ .-|+++|+|||++++++.+|..+|.
T Consensus 472 S~E~~~~L~i~~eDF~~Al~~iQPSak---------------------REGF~--tVPdVtW~dIGaL~~vR~eL~~aI~ 528 (802)
T KOG0733|consen 472 SKELLEGLSIKFEDFEEALSKIQPSAK---------------------REGFA--TVPDVTWDDIGALEEVRLELNMAIL 528 (802)
T ss_pred ChHHhccceecHHHHHHHHHhcCcchh---------------------cccce--ecCCCChhhcccHHHHHHHHHHHHh
Confidence 12455666666666666666521 12222 1257999999999999999999999
Q ss_pred cccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeE
Q 001735 748 LPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVI 827 (1019)
Q Consensus 748 ~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark~~PsI 827 (1019)
+|+++|++|++.| +.+|.|||||||||||||.||+|+|++.|++|+.|.+++|+++|+|++|..++++|..|+.++|||
T Consensus 529 ~PiK~pd~~k~lG-i~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCV 607 (802)
T KOG0733|consen 529 APIKRPDLFKALG-IDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCV 607 (802)
T ss_pred hhccCHHHHHHhC-CCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeE
Confidence 9999999999999 567899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHh--hCCCCcccCCCCHHHH
Q 001735 828 IFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIR--RLPRRIYVDLPDAENR 905 (1019)
Q Consensus 828 IfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlr--RFd~~I~V~lPd~eeR 905 (1019)
||+||||+|++.|.... .....+++|+||++|||+. ....|.|||+||+|+.+|++++| ||+..++|++|+.++|
T Consensus 608 IFFDEiDaL~p~R~~~~-s~~s~RvvNqLLtElDGl~--~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 608 IFFDEIDALVPRRSDEG-SSVSSRVVNQLLTELDGLE--ERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred EEecchhhcCcccCCCC-chhHHHHHHHHHHHhcccc--cccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 99999999999987654 7778899999999999995 45679999999999999999999 9999999999999999
Q ss_pred HHHHHHHHh--ccCCCCccCHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCCCccCCCHHHHHH
Q 001735 906 MKILRIFLA--HESLESGFQFNELANATE--GYSGSDLKNLCIAAAYRPVQELLEEERKRGKND-AAPVLRPLKLEDFIQ 980 (1019)
Q Consensus 906 ~eILk~~L~--~~~l~~dvdl~~LA~~Te--G~SgaDL~~L~~~Aa~~Airr~l~~~~~~~~~~-~~~~~~pLT~eDF~~ 980 (1019)
..||+.+.+ +..+.+++|+++||..+. ||||+||..||++|.+.|+++.+.+........ .......+|+.||++
T Consensus 685 ~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~e 764 (802)
T KOG0733|consen 685 VAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEE 764 (802)
T ss_pred HHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHH
Confidence 999999999 778889999999999876 999999999999999999999876432211110 011123589999999
Q ss_pred HHHhhCCCcccchhcHHHHHHHHHHhCCCC
Q 001735 981 SKAKVGPSVAYDAASMNELRKWNEQYGEGG 1010 (1019)
Q Consensus 981 Al~kv~PS~s~~~~~m~~lvkW~digG~~g 1010 (1019)
|+++++||++.... ..+...+..+|+--
T Consensus 765 A~~~i~pSv~~~dr--~~Yd~l~k~~~L~~ 792 (802)
T KOG0733|consen 765 AFQRIRPSVSERDR--KKYDRLNKSRSLST 792 (802)
T ss_pred HHHhcCCCccHHHH--HHHHHHhhhhcccc
Confidence 99999999986542 34666777777643
No 2
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-69 Score=621.32 Aligned_cols=408 Identities=31% Similarity=0.530 Sum_probs=359.2
Q ss_pred HHHHHHHHHhhcC-CeEEEEcCchhhhhcccCCc---cHHHHHHHHHHHHhcCC--CCEEEEecccCCCCCccccccccc
Q 001735 473 AMEALCEVLHSTQ-PLIVYFPDSSLWLSRAVPRC---NRKEFVRKVEEMFDQLS--GPVVLICGQNKNETGPKEKEKFTM 546 (1019)
Q Consensus 473 ~i~~L~e~~~~~~-p~Iiff~eid~~~~~~~~~~---~~~~~~s~~~~~l~~l~--g~v~vI~~~~~~d~~~~~~~~~~~ 546 (1019)
.+-..||++.++| |+|||+||+|.++ +++.. .-.++++.+.++||+|. ++||||
T Consensus 265 ~LR~~f~~a~k~~~psii~IdEld~l~--p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl------------------ 324 (693)
T KOG0730|consen 265 NLRKAFAEALKFQVPSIIFIDELDALC--PKREGADDVESRVVSQLLTLLDGLKPDAKVIVL------------------ 324 (693)
T ss_pred HHHHHHHHHhccCCCeeEeHHhHhhhC--CcccccchHHHHHHHHHHHHHhhCcCcCcEEEE------------------
Confidence 4566799999999 9999999999997 32222 23488999999999998 888887
Q ss_pred cccccccccCCCCchhhhhcccccCCCcchHHHHh-cccceEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q 001735 547 ILPNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN-LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVL 625 (1019)
Q Consensus 547 ~~~~~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~r-rFe~~~eI~LPdee~Rl~Il~Iht~k~~~~~~~~~~v~~l~~~l 625 (1019)
++||||+.||++|+| |||++++|+.|+..+|++|+.+|+++|.-. .+.++..++ -
T Consensus 325 --------------------~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~--~~~~l~~iA--~ 380 (693)
T KOG0730|consen 325 --------------------AATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL--SDVDLEDIA--V 380 (693)
T ss_pred --------------------EecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCc--chhhHHHHH--H
Confidence 677888899999998 999999999999999999999998776543 334444444 4
Q ss_pred hhccCCccccccccccchhhhHHhhhhHHhhhcccccccCCCCCccCCceeecHHHHHHHHHHhhhhhhccCCCcccccc
Q 001735 626 EDHELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQETASRKPTQNLKN 705 (1019)
Q Consensus 626 ~t~~~~gaDL~~Lct~~~~~s~~~~~~~V~~A~s~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~~~~~~~~~~~l~~ 705 (1019)
.++||.||||.+||.+++.-...+ +.++|..|+..+.|+..+
T Consensus 381 ~thGyvGaDL~~l~~ea~~~~~r~----------------------------~~~~~~~A~~~i~psa~R---------- 422 (693)
T KOG0730|consen 381 STHGYVGADLAALCREASLQATRR----------------------------TLEIFQEALMGIRPSALR---------- 422 (693)
T ss_pred HccchhHHHHHHHHHHHHHHHhhh----------------------------hHHHHHHHHhcCCchhhh----------
Confidence 999999999999997655433222 567888888877776211
Q ss_pred cchhhhhhhhcccccCCCCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHH
Q 001735 706 LAKDEYESNFVSAVVPPGEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKAL 785 (1019)
Q Consensus 706 ~~~~e~e~~~~~~ii~~~e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAI 785 (1019)
..++ .-++++|+||||++++|..|++.|.+|+.+|+.|.+.| +.|++|||||||||||||++|+|+
T Consensus 423 -----------e~~v--e~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~G-i~ppkGVLlyGPPGC~KT~lAkal 488 (693)
T KOG0730|consen 423 -----------EILV--EMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFG-ISPPKGVLLYGPPGCGKTLLAKAL 488 (693)
T ss_pred -----------heec--cCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhc-CCCCceEEEECCCCcchHHHHHHH
Confidence 1112 23679999999999999999999999999999999999 789999999999999999999999
Q ss_pred HHHhCCcEEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccc
Q 001735 786 ATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRS 865 (1019)
Q Consensus 786 A~elg~~fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~ 865 (1019)
|++++++|+.+.+++++++|+|++|+.++.+|+.|+..+|||||+||||++...|++.. ..+..+++++||++|||+..
T Consensus 489 Ane~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~-~~v~~RVlsqLLtEmDG~e~ 567 (693)
T KOG0730|consen 489 ANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSS-SGVTDRVLSQLLTEMDGLEA 567 (693)
T ss_pred hhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCc-cchHHHHHHHHHHHcccccc
Confidence 99999999999999999999999999999999999999999999999999999997543 48899999999999999954
Q ss_pred cCCCcEEEEEecCCCCCCcHHHHh--hCCCCcccCCCCHHHHHHHHHHHHhccCCCCccCHHHHHHHhcCCCHHHHHHHH
Q 001735 866 KESQKILILGATNRPFDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLC 943 (1019)
Q Consensus 866 ~~~~~VLVIaTTN~p~~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeG~SgaDL~~L~ 943 (1019)
..+|+|||+||+|+.||++++| ||++.|+||+||.+.|.+||+.++++.++.+++|+.+||+.|+||||+||.++|
T Consensus 568 --~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lC 645 (693)
T KOG0730|consen 568 --LKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVC 645 (693)
T ss_pred --cCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHH
Confidence 4689999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHHhhCCCcccc
Q 001735 944 IAAAYRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAYD 992 (1019)
Q Consensus 944 ~~Aa~~Airr~l~~~~~~~~~~~~~~~~pLT~eDF~~Al~kv~PS~s~~ 992 (1019)
++|+..|+++.++ ...|+.+||.+|++.++++++..
T Consensus 646 q~A~~~a~~e~i~-------------a~~i~~~hf~~al~~~r~s~~~~ 681 (693)
T KOG0730|consen 646 QEAALLALRESIE-------------ATEITWQHFEEALKAVRPSLTSE 681 (693)
T ss_pred HHHHHHHHHHhcc-------------cccccHHHHHHHHHhhcccCCHH
Confidence 9999999999765 24689999999999999999753
No 3
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.5e-58 Score=567.42 Aligned_cols=462 Identities=29% Similarity=0.493 Sum_probs=370.0
Q ss_pred HHHHHHHHHhhcCCeEEEEcCchhhhhccc--CCccHHHHHHHHHHHHhcCC--CCEEEEecccCCCCCccccccccccc
Q 001735 473 AMEALCEVLHSTQPLIVYFPDSSLWLSRAV--PRCNRKEFVRKVEEMFDQLS--GPVVLICGQNKNETGPKEKEKFTMIL 548 (1019)
Q Consensus 473 ~i~~L~e~~~~~~p~Iiff~eid~~~~~~~--~~~~~~~~~s~~~~~l~~l~--g~v~vI~~~~~~d~~~~~~~~~~~~~ 548 (1019)
.+..+|+.+...+|.||||||||.++.... ......++.+.|..+|+++. |+|+||
T Consensus 259 ~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI-------------------- 318 (733)
T TIGR01243 259 RLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVI-------------------- 318 (733)
T ss_pred HHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEE--------------------
Confidence 467789999999999999999999864321 12223467788888888875 445555
Q ss_pred cccccccCCCCchhhhhcccccCCCcchHHHHh--cccceEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHh
Q 001735 549 PNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLE 626 (1019)
Q Consensus 549 ~~~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~r--rFe~~~eI~LPdee~Rl~Il~Iht~k~~~~~~~~~~v~~l~~~l~ 626 (1019)
|+||+++.||++|+| ||+++++|++|+.++|.+||++|+..+. ...+.+++.++. .
T Consensus 319 ------------------~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~--l~~d~~l~~la~--~ 376 (733)
T TIGR01243 319 ------------------GATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMP--LAEDVDLDKLAE--V 376 (733)
T ss_pred ------------------eecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCC--CccccCHHHHHH--h
Confidence 777778889999998 9999999999999999999999964432 112445666766 7
Q ss_pred hccCCccccccccccchhhhHHhhhhHHhhhcccccccCCCCCccCCceeecHHHHHHHHHHhhhhhhccCCCccccccc
Q 001735 627 DHELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQETASRKPTQNLKNL 706 (1019)
Q Consensus 627 t~~~~gaDL~~Lct~~~~~s~~~~~~~V~~A~s~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~~~~~~~~~~~l~~~ 706 (1019)
+.||.|+||..||.+++.....+. +... ...+.....+..-.....++.++|+.|+..+.|+...
T Consensus 377 t~G~~gadl~~l~~~a~~~al~r~---~~~~-~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~----------- 441 (733)
T TIGR01243 377 THGFVGADLAALAKEAAMAALRRF---IREG-KINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSAIR----------- 441 (733)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH---hhcc-ccccccccccchhcccccccHHHHHHHHhhccccccc-----------
Confidence 899999999999876655442221 1000 0000000001001234578999999999888775210
Q ss_pred chhhhhhhhcccccCCCCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHH
Q 001735 707 AKDEYESNFVSAVVPPGEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALA 786 (1019)
Q Consensus 707 ~~~e~e~~~~~~ii~~~e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA 786 (1019)
+. .+ ..+.++|+||+|++.+++.|.+.+.+|+.+++.|.+.+ ..+++++|||||||||||++|+++|
T Consensus 442 --~~--------~~--~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g-~~~~~giLL~GppGtGKT~lakalA 508 (733)
T TIGR01243 442 --EV--------LV--EVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMG-IRPPKGVLLFGPPGTGKTLLAKAVA 508 (733)
T ss_pred --hh--------hc--cccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcC-CCCCceEEEECCCCCCHHHHHHHHH
Confidence 00 00 12357999999999999999999999999999999888 5788999999999999999999999
Q ss_pred HHhCCcEEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcccccc
Q 001735 787 TEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSK 866 (1019)
Q Consensus 787 ~elg~~fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~ 866 (1019)
++++++|+.++++++.++|+|+++..++.+|..|+...|+||||||||.+++.++.........+++++|+..++++..
T Consensus 509 ~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~- 587 (733)
T TIGR01243 509 TESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQE- 587 (733)
T ss_pred HhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccC-
Confidence 9999999999999999999999999999999999999999999999999998887655566778999999999999854
Q ss_pred CCCcEEEEEecCCCCCCcHHHHh--hCCCCcccCCCCHHHHHHHHHHHHhccCCCCccCHHHHHHHhcCCCHHHHHHHHH
Q 001735 867 ESQKILILGATNRPFDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCI 944 (1019)
Q Consensus 867 ~~~~VLVIaTTN~p~~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeG~SgaDL~~L~~ 944 (1019)
..+++||+|||+|+.||++++| ||++.++|++|+.++|.+||+.++.+..+..++++..||..|+||||+||.++|+
T Consensus 588 -~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~ 666 (733)
T TIGR01243 588 -LSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCR 666 (733)
T ss_pred -CCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHH
Confidence 4579999999999999999998 9999999999999999999999999888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCC---CCCCCccCCCHHHHHHHHHhhCCCcccchhcHHHHHHHHHHhCC
Q 001735 945 AAAYRPVQELLEEERKRGKN---DAAPVLRPLKLEDFIQSKAKVGPSVAYDAASMNELRKWNEQYGE 1008 (1019)
Q Consensus 945 ~Aa~~Airr~l~~~~~~~~~---~~~~~~~pLT~eDF~~Al~kv~PS~s~~~~~m~~lvkW~digG~ 1008 (1019)
+|++.|+++.+......... .......+|+++||.+|+++++|+++.+ .+..+.+|...||.
T Consensus 667 ~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~~~~--~~~~~~~~~~~~~~ 731 (733)
T TIGR01243 667 EAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSVSKE--DMLRYERLAKELKR 731 (733)
T ss_pred HHHHHHHHHHhhhccchhhhcccccccccCcccHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHhcc
Confidence 99999999876532211000 0111235799999999999999999865 35679999999874
No 4
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-57 Score=497.87 Aligned_cols=368 Identities=58% Similarity=0.911 Sum_probs=337.9
Q ss_pred ccccchhhhHHhhhhHHhhhcccccccCCCCCccCCceeecHHHHHHHHHHhhhhhhccCCCccccc--ccchhhhhhhh
Q 001735 638 VNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQETASRKPTQNLK--NLAKDEYESNF 715 (1019)
Q Consensus 638 Lct~~~~~s~~~~~~~V~~A~s~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~~~~~~~~~~~l~--~~~~~e~e~~~ 715 (1019)
.|+....+..+.++.++++|++||+.++..+.+++ +.++.++++.++...++..... .+++ .+..++|+..+
T Consensus 4 ~~~~~~~~i~~~~~~i~~~A~~~~~~~~~~~~~d~-~~~~~~eS~~~~~~~l~~~~~~-----~s~k~~~i~~ne~E~~i 77 (386)
T KOG0737|consen 4 SFTKDDVLITSLIRKIVAAAISHHLVHLLVPRLDP-NLKASRESLEKTEELLKNLEAE-----LSLKYRIIQKNEYEKRI 77 (386)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHhccccccCh-hhhhhHHHHHHHHHHHHhhhhc-----cchhhhhhhhhHHHHHh
Confidence 46656566668899999999999999999898888 8889999999998777765322 2222 46789999999
Q ss_pred cccccCCCCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001735 716 VSAVVPPGEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFIS 795 (1019)
Q Consensus 716 ~~~ii~~~e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~ 795 (1019)
...+++|.++.++|+||||++.++++|++.|.+|+++|++|.++++.+||+|||||||||||||+||+|+|++.|++|+.
T Consensus 78 ~s~~v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fIn 157 (386)
T KOG0737|consen 78 ASDVVPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFIN 157 (386)
T ss_pred hhcccchhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEE
Q 001735 796 ITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILG 875 (1019)
Q Consensus 796 Is~seL~s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIa 875 (1019)
|+++.++++|+|+.++.++.+|..|.+.+|+||||||+|.+++.| .+.+|++...+.++|+.+|||+.++.+.+|+|+|
T Consensus 158 v~~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R-~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlg 236 (386)
T KOG0737|consen 158 VSVSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQR-RSTDHEATAMMKNEFMALWDGLSSKDSERVLVLG 236 (386)
T ss_pred eeccccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhc-ccchHHHHHHHHHHHHHHhccccCCCCceEEEEe
Confidence 999999999999999999999999999999999999999999999 6778999999999999999999999988999999
Q ss_pred ecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCCCccCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Q 001735 876 ATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELL 955 (1019)
Q Consensus 876 TTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeG~SgaDL~~L~~~Aa~~Airr~l 955 (1019)
+||+|.+||.+++||+++.++|++|+..+|.+||+.+++.+.+.+++|+.++|.+|+||||+||+++|..|++.++++++
T Consensus 237 ATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~ 316 (386)
T KOG0737|consen 237 ATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELL 316 (386)
T ss_pred CCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH-----HhcCCC--CC------CCCccCCCHHHHHHHHHhhCCCcccchhcHHHHHHHHHHhCCCCcc
Q 001735 956 EEE-----RKRGKN--DA------APVLRPLKLEDFIQSKAKVGPSVAYDAASMNELRKWNEQYGEGGSR 1012 (1019)
Q Consensus 956 ~~~-----~~~~~~--~~------~~~~~pLT~eDF~~Al~kv~PS~s~~~~~m~~lvkW~digG~~g~r 1012 (1019)
..+ ...... .. ....+|++++||..|+.+|.+++..+...|...++|++.||++++|
T Consensus 317 ~~~~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~~~~~t~~~a~~~~~~~~~e~~sr 386 (386)
T KOG0737|consen 317 VSETGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSASVAMDATRMNALKQWNELYGEGGSR 386 (386)
T ss_pred HhcccchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhHHHHhhhhhHHHHHHHhhhccccCC
Confidence 875 111000 01 1236999999999999999999999999999999999999999986
No 5
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-54 Score=499.60 Aligned_cols=450 Identities=27% Similarity=0.453 Sum_probs=360.3
Q ss_pred HHHHHHHHHhhcCCeEEEEcCchhhhhcccCCccHHHHHHHHHHHHhcC-----CCCEEEEecccCCCCCcccccccccc
Q 001735 473 AMEALCEVLHSTQPLIVYFPDSSLWLSRAVPRCNRKEFVRKVEEMFDQL-----SGPVVLICGQNKNETGPKEKEKFTMI 547 (1019)
Q Consensus 473 ~i~~L~e~~~~~~p~Iiff~eid~~~~~~~~~~~~~~~~s~~~~~l~~l-----~g~v~vI~~~~~~d~~~~~~~~~~~~ 547 (1019)
.+++.|+-|+..+|.||||...|-+....... .-.++.+.+..+|..- -++++||
T Consensus 478 kl~~~f~~a~~~~pavifl~~~dvl~id~dgg-ed~rl~~~i~~~ls~e~~~~~~~~~ivv------------------- 537 (953)
T KOG0736|consen 478 KLQAIFSRARRCSPAVLFLRNLDVLGIDQDGG-EDARLLKVIRHLLSNEDFKFSCPPVIVV------------------- 537 (953)
T ss_pred HHHHHHHHHhhcCceEEEEeccceeeecCCCc-hhHHHHHHHHHHHhcccccCCCCceEEE-------------------
Confidence 45677888999999999999999886544432 2235566666655500 1445555
Q ss_pred ccccccccCCCCchhhhhcccccCCCcchHHHHhcccceEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhh
Q 001735 548 LPNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYNLFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLED 627 (1019)
Q Consensus 548 ~~~~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~rrFe~~~eI~LPdee~Rl~Il~Iht~k~~~~~~~~~~v~~l~~~l~t 627 (1019)
|.|++.+.|-..+++.|-.+|+++-|+++.|++||++.+.. ...+.+++.-..+.++
T Consensus 538 -------------------~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~----~~~n~~v~~k~~a~~t 594 (953)
T KOG0736|consen 538 -------------------ATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNH----LPLNQDVNLKQLARKT 594 (953)
T ss_pred -------------------EeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhc----cccchHHHHHHHHHhc
Confidence 55555566777788899999999999999999999997532 2234444433445589
Q ss_pred ccCCccccccccccchhhhHHhhhhHHhhhcccccccCCCCCccCCceeecHHHHHHHHHHhhhhhhccCCCcccccccc
Q 001735 628 HELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQETASRKPTQNLKNLA 707 (1019)
Q Consensus 628 ~~~~gaDL~~Lct~~~~~s~~~~~~~V~~A~s~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~~~~~~~~~~~l~~~~ 707 (1019)
.||+-.||++|.+.....+..+++.--..-.-++..+ ..+...-..++.+||.+++.+++..
T Consensus 595 ~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~---~~~~~~~~~l~~edf~kals~~~~~--------------- 656 (953)
T KOG0736|consen 595 SGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDE---GELCAAGFLLTEEDFDKALSRLQKE--------------- 656 (953)
T ss_pred CCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccc---cccccccceecHHHHHHHHHHHHHh---------------
Confidence 9999999999987664333333332110001111111 1122334678999999999988753
Q ss_pred hhhhhhhhcccccCCCCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHH
Q 001735 708 KDEYESNFVSAVVPPGEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALAT 787 (1019)
Q Consensus 708 ~~e~e~~~~~~ii~~~e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~ 787 (1019)
+...+-.|.-|+++|+||||++++|+.|.+.|.+|+.+|++|..+ +++..|||||||||||||.+|+|+|.
T Consensus 657 -------fs~aiGAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssg--lrkRSGILLYGPPGTGKTLlAKAVAT 727 (953)
T KOG0736|consen 657 -------FSDAIGAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSG--LRKRSGILLYGPPGTGKTLLAKAVAT 727 (953)
T ss_pred -------hhhhcCCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhcc--ccccceeEEECCCCCchHHHHHHHHh
Confidence 233455666688999999999999999999999999999999865 57778999999999999999999999
Q ss_pred HhCCcEEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCch-hHHHHHHHHHHHhhhcccccc
Q 001735 788 EAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFE-HEATRRMRNEFMSAWDGLRSK 866 (1019)
Q Consensus 788 elg~~fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~-~e~~~ril~~LL~~Ldgl~~~ 866 (1019)
++..+|+.|.+++|+++|+|++|++++++|+.|+..+|||||+||+|+++++|+..++ ..+++|++.+||.+|||+...
T Consensus 728 EcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~ 807 (953)
T KOG0736|consen 728 ECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDS 807 (953)
T ss_pred hceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCC
Confidence 9999999999999999999999999999999999999999999999999999987665 568899999999999999876
Q ss_pred CCCcEEEEEecCCCCCCcHHHHh--hCCCCcccCCC-CHHHHHHHHHHHHhccCCCCccCHHHHHHHhc-CCCHHHHHHH
Q 001735 867 ESQKILILGATNRPFDLDDAVIR--RLPRRIYVDLP-DAENRMKILRIFLAHESLESGFQFNELANATE-GYSGSDLKNL 942 (1019)
Q Consensus 867 ~~~~VLVIaTTN~p~~LD~aLlr--RFd~~I~V~lP-d~eeR~eILk~~L~~~~l~~dvdl~~LA~~Te-G~SgaDL~~L 942 (1019)
....|+|||+||+|+.||++++| |||+.++++++ +.+.+..+|+...++..+..++|+.+||+.+. .|||+|+..+
T Consensus 808 ~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsL 887 (953)
T KOG0736|consen 808 SSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSL 887 (953)
T ss_pred CCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHH
Confidence 77899999999999999999999 99999999987 57789999999999999999999999999985 7999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcC--CCCCCCCccCCCHHHHHHHHHhhCCCcccc
Q 001735 943 CIAAAYRPVQELLEEERKRG--KNDAAPVLRPLKLEDFIQSKAKVGPSVAYD 992 (1019)
Q Consensus 943 ~~~Aa~~Airr~l~~~~~~~--~~~~~~~~~pLT~eDF~~Al~kv~PS~s~~ 992 (1019)
|..|.+.|++|.+....... .....+....|+|+||.+++++++||++..
T Consensus 888 CSdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSvS~~ 939 (953)
T KOG0736|consen 888 CSDAMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSVSEQ 939 (953)
T ss_pred HHHHHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCcccHH
Confidence 99999999999776433221 122334445699999999999999999853
No 6
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-49 Score=467.27 Aligned_cols=419 Identities=33% Similarity=0.518 Sum_probs=358.1
Q ss_pred hhHHHHHHHHHhhcCCeEEEEcCchhhhhc--ccCCccHHHHHHHHHHHHhcCCCCEEEEecccCCCCCccccccccccc
Q 001735 471 YIAMEALCEVLHSTQPLIVYFPDSSLWLSR--AVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMIL 548 (1019)
Q Consensus 471 ~~~i~~L~e~~~~~~p~Iiff~eid~~~~~--~~~~~~~~~~~s~~~~~l~~l~g~v~vI~~~~~~d~~~~~~~~~~~~~ 548 (1019)
...+..+|+.+...+|.|||+||+|.+... .........+++.+...|+.+. ++.|+
T Consensus 62 ~~~~~~~~~~a~~~~~~ii~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~-~~~v~-------------------- 120 (494)
T COG0464 62 ELRLRELFEEAEKLAPSIIFIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLK-RGQVI-------------------- 120 (494)
T ss_pred HHHHHHHHHHHHHhCCCeEeechhhhcccCccccccchhhHHHHHHHHhccccc-CCceE--------------------
Confidence 457889999999999999999999999533 2334466678999999999998 44332
Q ss_pred cccccccCCCCchhhhhcccccCCCcchHHHHh--cccceEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHh
Q 001735 549 PNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLE 626 (1019)
Q Consensus 549 ~~~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~r--rFe~~~eI~LPdee~Rl~Il~Iht~k~~~~~~~~~~v~~l~~~l~ 626 (1019)
++|+|||++.+|+++++ ||++++++.+|+..+|++|+.+|+..|.... ..+...++. .
T Consensus 121 ----------------~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~--~~~~~~~a~--~ 180 (494)
T COG0464 121 ----------------VIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQIHTRLMFLGP--PGTGKTLAA--R 180 (494)
T ss_pred ----------------EEeecCCccccChhHhCccccceeeecCCCCHHHHHHHHHHHHhcCCCcc--cccHHHHHH--h
Confidence 56889999999999998 9999999999999999999999965554333 344555555 8
Q ss_pred hccCCccccccccccchhhhHHhhhhHHhhhcccccccCCCCCccCCceeecHHHHHHHHHHhhhhhhccCCCccccccc
Q 001735 627 DHELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQETASRKPTQNLKNL 706 (1019)
Q Consensus 627 t~~~~gaDL~~Lct~~~~~s~~~~~~~V~~A~s~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~~~~~~~~~~~l~~~ 706 (1019)
+.||.++|+..||.++......+.. ......+.++.++|..+++++.+.
T Consensus 181 ~~~~~~~~~~~l~~~~~~~~~~r~~-----------------~~~~~~~~~~~~~~~~~l~~~~~~-------------- 229 (494)
T COG0464 181 TVGKSGADLGALAKEAALRELRRAI-----------------DLVGEYIGVTEDDFEEALKKVLPS-------------- 229 (494)
T ss_pred cCCccHHHHHHHHHHHHHHHHHhhh-----------------ccCcccccccHHHHHHHHHhcCcc--------------
Confidence 8999999999999777666544322 123556778999999999887763
Q ss_pred chhhhhhhhcccccCCCCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHH
Q 001735 707 AKDEYESNFVSAVVPPGEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALA 786 (1019)
Q Consensus 707 ~~~e~e~~~~~~ii~~~e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA 786 (1019)
..+-...+.++|+|+||++.+++.+++.+.+++.+++.|.+.+ .++++++|||||||||||+||+|+|
T Consensus 230 -----------~~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~-~~~~~giLl~GpPGtGKT~lAkava 297 (494)
T COG0464 230 -----------RGVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLG-LRPPKGVLLYGPPGTGKTLLAKAVA 297 (494)
T ss_pred -----------cccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcC-CCCCCeeEEECCCCCCHHHHHHHHH
Confidence 0111223568999999999999999999999999999998766 6788999999999999999999999
Q ss_pred HHhCCcEEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcccccc
Q 001735 787 TEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSK 866 (1019)
Q Consensus 787 ~elg~~fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~ 866 (1019)
++++.+|+.+..++++++|+|++++.++.+|..|++.+||||||||+|.+++.+.... .....+++++|+..|+++..
T Consensus 298 ~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~-~~~~~r~~~~lL~~~d~~e~- 375 (494)
T COG0464 298 LESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSE-DGSGRRVVGQLLTELDGIEK- 375 (494)
T ss_pred hhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCC-chHHHHHHHHHHHHhcCCCc-
Confidence 9999999999999999999999999999999999999999999999999999886542 33347899999999999854
Q ss_pred CCCcEEEEEecCCCCCCcHHHHh--hCCCCcccCCCCHHHHHHHHHHHHhccCC--CCccCHHHHHHHhcCCCHHHHHHH
Q 001735 867 ESQKILILGATNRPFDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESL--ESGFQFNELANATEGYSGSDLKNL 942 (1019)
Q Consensus 867 ~~~~VLVIaTTN~p~~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~l--~~dvdl~~LA~~TeG~SgaDL~~L 942 (1019)
...|+||+|||+|+.+|++++| ||+..++|++|+.++|.+||+.++..... ..++++..+++.|+||+|+||..+
T Consensus 376 -~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i 454 (494)
T COG0464 376 -AEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAAL 454 (494)
T ss_pred -cCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHH
Confidence 4569999999999999999999 99999999999999999999999995443 578999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHHhhCCCcc
Q 001735 943 CIAAAYRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQSKAKVGPSVA 990 (1019)
Q Consensus 943 ~~~Aa~~Airr~l~~~~~~~~~~~~~~~~pLT~eDF~~Al~kv~PS~s 990 (1019)
|.+|++.++++.. ..++|++||..|+++++|++.
T Consensus 455 ~~ea~~~~~~~~~--------------~~~~~~~~~~~a~~~~~p~~~ 488 (494)
T COG0464 455 VREAALEALREAR--------------RREVTLDDFLDALKKIKPSVT 488 (494)
T ss_pred HHHHHHHHHHHhc--------------cCCccHHHHHHHHHhcCCCCC
Confidence 9999999998853 257999999999999999986
No 7
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-50 Score=455.42 Aligned_cols=377 Identities=18% Similarity=0.209 Sum_probs=293.0
Q ss_pred eEEEEcCchhhhhc--cc--CCccHHHHHHHHHHHHhcCCCCEEEEecccCCCCCccccccccccccccccccCCCCch-
Q 001735 487 LIVYFPDSSLWLSR--AV--PRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPNFGRLAKLPLPL- 561 (1019)
Q Consensus 487 ~Iiff~eid~~~~~--~~--~~~~~~~~~s~~~~~l~~l~g~v~vI~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~- 561 (1019)
-||.|||||-++.+ |. ....|.++++.|++.||+.+ .|
T Consensus 326 HIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVe-------------------------------------qLN 368 (744)
T KOG0741|consen 326 HIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVE-------------------------------------QLN 368 (744)
T ss_pred eEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHH-------------------------------------hhh
Confidence 49999999999755 22 35678899998877666544 22
Q ss_pred hhhhcccccCCCcchHHHHh--cccceEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhccCCcccccccc
Q 001735 562 QRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLEDHELSCTDLLHVN 639 (1019)
Q Consensus 562 ~~LvIGmTNR~d~iDeaL~r--rFe~~~eI~LPdee~Rl~Il~Iht~k~~~~~~~~~~v~~l~~~l~t~~~~gaDL~~Lc 639 (1019)
|+||||||||+|||||||+| |||+|+||+||||+||+|||+|||.+|+++..++.|++.-+.+..||||+||+|++|
T Consensus 369 NILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAElegl- 447 (744)
T KOG0741|consen 369 NILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGL- 447 (744)
T ss_pred cEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHH-
Confidence 37888999999999999999 999999999999999999999999999999999888776666669999999999988
Q ss_pred ccchhhhHHhhhhHHhhhcccccccCCCCCc---cCCceeecHHHHHHHHHHhhhhhhccCCCcccccccchhhhhhhhc
Q 001735 640 TDGVILTKQRAEKVVGWAKNHYLSSCSFPSV---KGQRLHLPRESLEIAILRLKEQETASRKPTQNLKNLAKDEYESNFV 716 (1019)
Q Consensus 640 t~~~~~s~~~~~~~V~~A~s~~l~~~~~~~v---~~~kv~V~~~df~~Al~~l~p~~~~~~~~~~~l~~~~~~e~e~~~~ 716 (1019)
++.+.++|+++++.-..+..+ +-.+++|+++||.+||++++|+ |++++++++....
T Consensus 448 ----------VksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPA-----------FG~see~l~~~~~ 506 (744)
T KOG0741|consen 448 ----------VKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPA-----------FGISEEDLERFVM 506 (744)
T ss_pred ----------HHHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcc-----------cCCCHHHHHHHHh
Confidence 566677888888765433333 3459999999999999999997 8999999999999
Q ss_pred ccccCCCCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001735 717 SAVVPPGEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISI 796 (1019)
Q Consensus 717 ~~ii~~~e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~I 796 (1019)
.+++.++.+ ...+.+.-..++.+ .+.++ ..+..++||+||||+|||+||..+|...++||+.+
T Consensus 507 ~Gmi~~g~~---------v~~il~~G~llv~q-vk~s~-------~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKi 569 (744)
T KOG0741|consen 507 NGMINWGPP---------VTRILDDGKLLVQQ-VKNSE-------RSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKI 569 (744)
T ss_pred CCceeeccc---------HHHHHhhHHHHHHH-hhccc-------cCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEE
Confidence 999998865 33344444444433 33333 34557899999999999999999999999999997
Q ss_pred eccc-cchhhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEE
Q 001735 797 TGST-LTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILG 875 (1019)
Q Consensus 797 s~se-L~s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIa 875 (1019)
-.++ +.+.........++.+|.+|++++.+||+||+|++|+... +..+.+++.++++|+.++...++ .+++++|++
T Consensus 570 iSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~v--pIGPRfSN~vlQaL~VllK~~pp-kg~kLli~~ 646 (744)
T KOG0741|consen 570 ISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYV--PIGPRFSNLVLQALLVLLKKQPP-KGRKLLIFG 646 (744)
T ss_pred eChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhccc--ccCchhhHHHHHHHHHHhccCCC-CCceEEEEe
Confidence 6655 4444444568899999999999999999999999998765 34578889999999999988764 456899999
Q ss_pred ecCCCCCCcH-HHHhhCCCCcccCCCCH-HHHHHHHHHHHhccCCCCccCHHHHHHHhcC----CCHHHHHHHHHHH
Q 001735 876 ATNRPFDLDD-AVIRRLPRRIYVDLPDA-ENRMKILRIFLAHESLESGFQFNELANATEG----YSGSDLKNLCIAA 946 (1019)
Q Consensus 876 TTN~p~~LD~-aLlrRFd~~I~V~lPd~-eeR~eILk~~L~~~~l~~dvdl~~LA~~TeG----~SgaDL~~L~~~A 946 (1019)
||++...|.+ .+...|+..+.||..+. ++..+++.. .++..+-+...++....+ .-...|..++.+|
T Consensus 647 TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~----~n~fsd~~~~~~~~~~~~~~~~vgIKklL~lie~a 719 (744)
T KOG0741|consen 647 TTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEE----LNIFSDDEVRAIAEQLLSKKVNVGIKKLLMLIEMA 719 (744)
T ss_pred cccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHH----ccCCCcchhHHHHHHHhccccchhHHHHHHHHHHH
Confidence 9998887766 77889999999987543 666666553 233334444444444333 1134444555444
No 8
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-48 Score=424.02 Aligned_cols=281 Identities=43% Similarity=0.767 Sum_probs=255.8
Q ss_pred CCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 001735 723 GEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT 802 (1019)
Q Consensus 723 ~e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~ 802 (1019)
+.+++.|+||.|+.++|+.|++.|.+|+-.|+.|.. +.+|.++||++||||||||+||+|||.+++..|++|+.+.+.
T Consensus 205 ~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~G--irrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstlt 282 (491)
T KOG0738|consen 205 RNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKG--IRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLT 282 (491)
T ss_pred cCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhh--cccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhh
Confidence 457799999999999999999999999999999974 368999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccC--CCcEEEEEecCCC
Q 001735 803 SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKE--SQKILILGATNRP 880 (1019)
Q Consensus 803 s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~--~~~VLVIaTTN~p 880 (1019)
++|.|++|+.++-+|+.|+.++|++|||||||+|+..|++..+|+.++++.++||.+|||+.... ...|+|+|+||-|
T Consensus 283 SKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~P 362 (491)
T KOG0738|consen 283 SKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFP 362 (491)
T ss_pred hhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999986432 2358899999999
Q ss_pred CCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCCCccCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH-
Q 001735 881 FDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEER- 959 (1019)
Q Consensus 881 ~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeG~SgaDL~~L~~~Aa~~Airr~l~~~~- 959 (1019)
|+||++++|||.+.|+||+|+.+.|..+|+..+....+.++++++.||+.++||||+||.++|++|.+.++||.+....
T Consensus 363 WdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~ 442 (491)
T KOG0738|consen 363 WDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLTP 442 (491)
T ss_pred cchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998764311
Q ss_pred --hcCCCCCCCCccCCCHHHHHHHHHhhCCCcccchhcHHHHHHHHHHhCC
Q 001735 960 --KRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAYDAASMNELRKWNEQYGE 1008 (1019)
Q Consensus 960 --~~~~~~~~~~~~pLT~eDF~~Al~kv~PS~s~~~~~m~~lvkW~digG~ 1008 (1019)
........+. .|++++||+.|+.+++||++.. .+..+.+|.+.||.
T Consensus 443 ~ei~~lakE~~~-~pv~~~Dfe~Al~~v~pSvs~~--d~~k~ekW~~efGS 490 (491)
T KOG0738|consen 443 REIRQLAKEEPK-MPVTNEDFEEALRKVRPSVSAA--DLEKYEKWMDEFGS 490 (491)
T ss_pred HHhhhhhhhccc-cccchhhHHHHHHHcCcCCCHH--HHHHHHHHHHHhcC
Confidence 1111222333 7899999999999999999743 46778999999995
No 9
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-47 Score=418.48 Aligned_cols=247 Identities=39% Similarity=0.674 Sum_probs=230.0
Q ss_pred CCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch
Q 001735 724 EIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS 803 (1019)
Q Consensus 724 e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s 803 (1019)
.|.++|+||||+++++++|++.|++|+.+|++|...| +.||+|||||||||||||+||+|+|++.++.|+.+.+++|+.
T Consensus 145 ~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~G-I~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVq 223 (406)
T COG1222 145 KPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELG-IDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQ 223 (406)
T ss_pred CCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcC-CCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHH
Confidence 4789999999999999999999999999999999999 799999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCC--chhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCC
Q 001735 804 KWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGA--FEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPF 881 (1019)
Q Consensus 804 ~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~--~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~ 881 (1019)
+|.|+..+.++.+|..|+.++||||||||||++.++|... .......+++.+||++|||+.+ ..+|-||++||+++
T Consensus 224 KYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~--~~nvKVI~ATNR~D 301 (406)
T COG1222 224 KYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP--RGNVKVIMATNRPD 301 (406)
T ss_pred HHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC--CCCeEEEEecCCcc
Confidence 9999999999999999999999999999999999988653 2233445666799999999965 46799999999999
Q ss_pred CCcHHHHh--hCCCCcccCCCCHHHHHHHHHHHHhccCCCCccCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 001735 882 DLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEER 959 (1019)
Q Consensus 882 ~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeG~SgaDL~~L~~~Aa~~Airr~l~~~~ 959 (1019)
.|||||+| ||++.|.||+|+.+.|.+||+.|.++..+..++||+.||+.|+|+||+||+++|.+|.+.|+|+- +
T Consensus 302 ~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~----R 377 (406)
T COG1222 302 ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRER----R 377 (406)
T ss_pred ccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhc----c
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999873 2
Q ss_pred hcCCCCCCCCccCCCHHHHHHHHHhhCCC
Q 001735 960 KRGKNDAAPVLRPLKLEDFIQSKAKVGPS 988 (1019)
Q Consensus 960 ~~~~~~~~~~~~pLT~eDF~~Al~kv~PS 988 (1019)
..+||+||.+|.+++...
T Consensus 378 -----------~~Vt~~DF~~Av~KV~~~ 395 (406)
T COG1222 378 -----------DEVTMEDFLKAVEKVVKK 395 (406)
T ss_pred -----------CeecHHHHHHHHHHHHhc
Confidence 469999999999998643
No 10
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-45 Score=421.17 Aligned_cols=401 Identities=28% Similarity=0.427 Sum_probs=322.9
Q ss_pred HHHHHHHHHhhcCCeEEEEcCchhhhhcccCCccHHHHHHHHH--------HHHhcCCCCEEEEecccCCCCCccccccc
Q 001735 473 AMEALCEVLHSTQPLIVYFPDSSLWLSRAVPRCNRKEFVRKVE--------EMFDQLSGPVVLICGQNKNETGPKEKEKF 544 (1019)
Q Consensus 473 ~i~~L~e~~~~~~p~Iiff~eid~~~~~~~~~~~~~~~~s~~~--------~~l~~l~g~v~vI~~~~~~d~~~~~~~~~ 544 (1019)
.++..|-++...+|+||++||.|-|+..+..+.-+...++..+ ....++.-.+.||++-+......
T Consensus 482 ~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~------ 555 (952)
T KOG0735|consen 482 FLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLN------ 555 (952)
T ss_pred HHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcC------
Confidence 5667777888899999999999999874443333334433322 22233345556775554443222
Q ss_pred cccccccccccCCCCchhhhhcccccCCCcchHHHH--hcccceEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Q 001735 545 TMILPNFGRLAKLPLPLQRLTEGLKATKRSDDNEIY--NLFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELH 622 (1019)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~--rrFe~~~eI~LPdee~Rl~Il~Iht~k~~~~~~~~~~v~~l~ 622 (1019)
+-|. ++|..++-++.|+...|.+||..-..+ +......++++.++
T Consensus 556 --------------------------------~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~-~~~~~~~~dLd~ls 602 (952)
T KOG0735|consen 556 --------------------------------PLLVSPLLFQIVIALPAPAVTRRKEILTTIFSK-NLSDITMDDLDFLS 602 (952)
T ss_pred --------------------------------hhhcCccceEEEEecCCcchhHHHHHHHHHHHh-hhhhhhhHHHHHHH
Confidence 2222 299999999999999999999865433 22334455566655
Q ss_pred HHHhhccCCccccccccccchhhhHHhhhhHHhhhcccccccCCCCCccCCceeecHHHHHHHHHHhhhhhhccCCCccc
Q 001735 623 KVLEDHELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQETASRKPTQN 702 (1019)
Q Consensus 623 ~~l~t~~~~gaDL~~Lct~~~~~s~~~~~~~V~~A~s~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~~~~~~~~~~~ 702 (1019)
. +|-||.--||.-+ ++.+|..|+ +.+. -+..+ .++.++|.+++..+.|..-+.-
T Consensus 603 ~--~TEGy~~~DL~if-----------VeRai~~a~---leri----s~~~k-lltke~f~ksL~~F~P~aLR~i----- 656 (952)
T KOG0735|consen 603 V--KTEGYLATDLVIF-----------VERAIHEAF---LERI----SNGPK-LLTKELFEKSLKDFVPLALRGI----- 656 (952)
T ss_pred H--hcCCccchhHHHH-----------HHHHHHHHH---HHHh----ccCcc-cchHHHHHHHHHhcChHHhhhc-----
Confidence 4 7889988788644 456666665 2110 12334 6899999999998888632111
Q ss_pred ccccchhhhhhhhcccccCCCCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHH
Q 001735 703 LKNLAKDEYESNFVSAVVPPGEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLA 782 (1019)
Q Consensus 703 l~~~~~~e~e~~~~~~ii~~~e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LA 782 (1019)
--....+..|+||||+.++++.|++.+++|.+.|.+|...+ ++.+.|||||||||||||+||
T Consensus 657 -----------------k~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~p-lr~~~giLLyGppGcGKT~la 718 (952)
T KOG0735|consen 657 -----------------KLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCP-LRLRTGILLYGPPGCGKTLLA 718 (952)
T ss_pred -----------------cccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCC-cccccceEEECCCCCcHHHHH
Confidence 11112347899999999999999999999999999999887 577899999999999999999
Q ss_pred HHHHHHhCCcEEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcc
Q 001735 783 KALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDG 862 (1019)
Q Consensus 783 rAIA~elg~~fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldg 862 (1019)
.|+|..++..|+.+.+++++++|.|.+|+.++.+|..|+..+|||||+||+|+++++|+.. .-.+..|++|+||++|||
T Consensus 719 ~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhD-sTGVTDRVVNQlLTelDG 797 (952)
T KOG0735|consen 719 SAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHD-STGVTDRVVNQLLTELDG 797 (952)
T ss_pred HHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCC-CCCchHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999999999999999998754 345788999999999999
Q ss_pred ccccCCCcEEEEEecCCCCCCcHHHHh--hCCCCcccCCCCHHHHHHHHHHHHhccCCCCccCHHHHHHHhcCCCHHHHH
Q 001735 863 LRSKESQKILILGATNRPFDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLK 940 (1019)
Q Consensus 863 l~~~~~~~VLVIaTTN~p~~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeG~SgaDL~ 940 (1019)
... -..|.|+|+|.+|+.+|+|++| |+++.++.++|+..+|.+|++.+.....+..++|++.+|.+|+||||+||+
T Consensus 798 ~Eg--l~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq 875 (952)
T KOG0735|consen 798 AEG--LDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQ 875 (952)
T ss_pred ccc--cceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHH
Confidence 855 3579999999999999999999 999999999999999999999999988889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001735 941 NLCIAAAYRPVQELLEEER 959 (1019)
Q Consensus 941 ~L~~~Aa~~Airr~l~~~~ 959 (1019)
.++..|.+.|+++++....
T Consensus 876 ~ll~~A~l~avh~~l~~~~ 894 (952)
T KOG0735|consen 876 SLLYNAQLAAVHEILKRED 894 (952)
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 9999999999999887543
No 11
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-45 Score=419.22 Aligned_cols=286 Identities=34% Similarity=0.576 Sum_probs=260.3
Q ss_pred CCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchh
Q 001735 725 IGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSK 804 (1019)
Q Consensus 725 ~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s~ 804 (1019)
.++.|.||||+++...+|.+++.. +.+|+.|...| +.|++|||||||||||||+||+|||.++++||+.|+++++++.
T Consensus 185 snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lG-v~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSG 262 (802)
T KOG0733|consen 185 SNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLG-VRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSG 262 (802)
T ss_pred CCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcC-CCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcc
Confidence 468999999999999999999988 99999999999 6899999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccC--CCcEEEEEecCCCCC
Q 001735 805 WFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKE--SQKILILGATNRPFD 882 (1019)
Q Consensus 805 ~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~--~~~VLVIaTTN~p~~ 882 (1019)
+.|++|+.++.+|+.|+...|||+||||||++.++|.. ...++.++++.+|+..||++.... +.+|+||||||+|+.
T Consensus 263 vSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~-aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDs 341 (802)
T KOG0733|consen 263 VSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE-AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDS 341 (802)
T ss_pred cCcccHHHHHHHHHHHhccCCeEEEeecccccccchhh-HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcc
Confidence 99999999999999999999999999999999999987 468889999999999999987653 478999999999999
Q ss_pred CcHHHHh--hCCCCcccCCCCHHHHHHHHHHHHhccCCCCccCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001735 883 LDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERK 960 (1019)
Q Consensus 883 LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeG~SgaDL~~L~~~Aa~~Airr~l~~~~~ 960 (1019)
||++|+| ||++.|.+..|+..+|.+||+.++++..+..++|+..||+.|.||.|+||.+||.+|+..|++|++.....
T Consensus 342 lDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~ 421 (802)
T KOG0733|consen 342 LDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSS 421 (802)
T ss_pred cCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccC
Confidence 9999999 99999999999999999999999999999999999999999999999999999999999999998874321
Q ss_pred ----cC---------CCC-C-------------------------C--------CCccCCCHHHHHHHHHhhCCCcccch
Q 001735 961 ----RG---------KND-A-------------------------A--------PVLRPLKLEDFIQSKAKVGPSVAYDA 993 (1019)
Q Consensus 961 ----~~---------~~~-~-------------------------~--------~~~~pLT~eDF~~Al~kv~PS~s~~~ 993 (1019)
.. .+. . . ...-.|+++||++|+..++||..++.
T Consensus 422 p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREG 501 (802)
T KOG0733|consen 422 PLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKREG 501 (802)
T ss_pred ccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhccc
Confidence 00 000 0 0 01124899999999999999999998
Q ss_pred hcHHHHHHHHHHhCCCCccc
Q 001735 994 ASMNELRKWNEQYGEGGSRR 1013 (1019)
Q Consensus 994 ~~m~~lvkW~digG~~g~rk 1013 (1019)
-.-.+-+.|+|+||+...|.
T Consensus 502 F~tVPdVtW~dIGaL~~vR~ 521 (802)
T KOG0733|consen 502 FATVPDVTWDDIGALEEVRL 521 (802)
T ss_pred ceecCCCChhhcccHHHHHH
Confidence 88889999999999988775
No 12
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-43 Score=377.80 Aligned_cols=286 Identities=40% Similarity=0.723 Sum_probs=253.5
Q ss_pred ccCCCCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 001735 719 VVPPGEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITG 798 (1019)
Q Consensus 719 ii~~~e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~ 798 (1019)
.|--..|++.|+|+.|++..|++|++.|.+|+..|++|... .+|.++|||||||||||++||+|+|.+.+..|+.|+.
T Consensus 122 AIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGk--R~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSS 199 (439)
T KOG0739|consen 122 AIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGK--RKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSS 199 (439)
T ss_pred hhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCC--CCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeeh
Confidence 33345688999999999999999999999999999999743 5789999999999999999999999999999999999
Q ss_pred cccchhhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecC
Q 001735 799 STLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATN 878 (1019)
Q Consensus 799 seL~s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN 878 (1019)
++|+++|.|++++.++++|+.|+.+.|+||||||||.+++.+... +++..+++..+||.+|.|.-. .+..|+|+++||
T Consensus 200 SDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~en-EseasRRIKTEfLVQMqGVG~-d~~gvLVLgATN 277 (439)
T KOG0739|consen 200 SDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSEN-ESEASRRIKTEFLVQMQGVGN-DNDGVLVLGATN 277 (439)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCC-chHHHHHHHHHHHHhhhcccc-CCCceEEEecCC
Confidence 999999999999999999999999999999999999999887654 788999999999999999864 567899999999
Q ss_pred CCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCC-CCccCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 001735 879 RPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESL-ESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEE 957 (1019)
Q Consensus 879 ~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l-~~dvdl~~LA~~TeG~SgaDL~~L~~~Aa~~Airr~l~~ 957 (1019)
-||.||.+++|||.+.|++|+|+...|..+|+.++...+. -.+.|+.+|+.+|+||||+||.-+++.|.+.++|++...
T Consensus 278 iPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvqsA 357 (439)
T KOG0739|consen 278 IPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQSA 357 (439)
T ss_pred CchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhhhh
Confidence 9999999999999999999999999999999999986553 367899999999999999999999999999999998765
Q ss_pred HHhcCCCC-------------------------------CCCCccCCCHHHHHHHHHhhCCCcccchhcHHHHHHHHHHh
Q 001735 958 ERKRGKND-------------------------------AAPVLRPLKLEDFIQSKAKVGPSVAYDAASMNELRKWNEQY 1006 (1019)
Q Consensus 958 ~~~~~~~~-------------------------------~~~~~~pLT~eDF~~Al~kv~PS~s~~~~~m~~lvkW~dig 1006 (1019)
.+...... +...-.+|||.||..++...+|++..+ .+....++.+-|
T Consensus 358 thFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTvn~~--Dl~k~~~Ft~dF 435 (439)
T KOG0739|consen 358 THFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTVNED--DLLKHEKFTEDF 435 (439)
T ss_pred hhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCCCHH--HHHHHHHHHHhh
Confidence 44321110 011124799999999999999999764 356678999999
Q ss_pred CCCC
Q 001735 1007 GEGG 1010 (1019)
Q Consensus 1007 G~~g 1010 (1019)
|++|
T Consensus 436 GqEg 439 (439)
T KOG0739|consen 436 GQEG 439 (439)
T ss_pred ccCC
Confidence 9886
No 13
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=1.6e-37 Score=363.39 Aligned_cols=259 Identities=23% Similarity=0.389 Sum_probs=225.2
Q ss_pred CCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch
Q 001735 724 EIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS 803 (1019)
Q Consensus 724 e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s 803 (1019)
.+.++|+||||++.+|+.|.+..... +......| +.+++|||||||||||||++|+++|++++.+|+.++++.+.+
T Consensus 222 ~~~~~~~dvgGl~~lK~~l~~~~~~~---~~~~~~~g-l~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~ 297 (489)
T CHL00195 222 SVNEKISDIGGLDNLKDWLKKRSTSF---SKQASNYG-LPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFG 297 (489)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHh---hHHHHhcC-CCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcc
Confidence 35678999999999999998755332 12223445 567899999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCC
Q 001735 804 KWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDL 883 (1019)
Q Consensus 804 ~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~L 883 (1019)
++.|+++..++.+|..|+..+||||||||||.++..+....+.....+++++|+..++.. ..+|+||+|||+++.|
T Consensus 298 ~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~----~~~V~vIaTTN~~~~L 373 (489)
T CHL00195 298 GIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK----KSPVFVVATANNIDLL 373 (489)
T ss_pred cccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC----CCceEEEEecCChhhC
Confidence 999999999999999999999999999999999876554445667788999999888643 3579999999999999
Q ss_pred cHHHHh--hCCCCcccCCCCHHHHHHHHHHHHhccCCC--CccCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 001735 884 DDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLE--SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEER 959 (1019)
Q Consensus 884 D~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~l~--~dvdl~~LA~~TeG~SgaDL~~L~~~Aa~~Airr~l~~~~ 959 (1019)
|++++| ||+..++|++|+.++|.+||+.++.+.... .+.++..||..|+||||+||.++|.+|++.|+.+
T Consensus 374 d~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~------ 447 (489)
T CHL00195 374 PLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYE------ 447 (489)
T ss_pred CHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHc------
Confidence 999998 999999999999999999999999875432 4789999999999999999999999999887643
Q ss_pred hcCCCCCCCCccCCCHHHHHHHHHhhCCCcccchhcHHHHHHHHHHh
Q 001735 960 KRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAYDAASMNELRKWNEQY 1006 (1019)
Q Consensus 960 ~~~~~~~~~~~~pLT~eDF~~Al~kv~PS~s~~~~~m~~lvkW~dig 1006 (1019)
.++++.+||..|+.++.|........+..+++|...+
T Consensus 448 ----------~~~lt~~dl~~a~~~~~Pls~~~~e~i~~~~~Wa~~~ 484 (489)
T CHL00195 448 ----------KREFTTDDILLALKQFIPLAQTEKEQIEALQNWASSG 484 (489)
T ss_pred ----------CCCcCHHHHHHHHHhcCCCcccCHHHHHHHHHHHHcC
Confidence 1579999999999999999877777788999999864
No 14
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-39 Score=366.26 Aligned_cols=251 Identities=34% Similarity=0.575 Sum_probs=229.6
Q ss_pred ccCCCCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 001735 719 VVPPGEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITG 798 (1019)
Q Consensus 719 ii~~~e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~ 798 (1019)
+.|....+++|+|+.|.++.|++|++.|.+ |+.|+.|.+.| -+-|+||||.||||||||+||+|+|.+.++||++.++
T Consensus 293 v~p~~~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLG-GKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sG 370 (752)
T KOG0734|consen 293 VDPEQMKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLG-GKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASG 370 (752)
T ss_pred cChhhhcccccccccChHHHHHHHHHHHHH-hcCcHHhhhcc-CcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccc
Confidence 334444579999999999999999999987 99999999987 3677999999999999999999999999999999999
Q ss_pred cccchhhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecC
Q 001735 799 STLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATN 878 (1019)
Q Consensus 799 seL~s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN 878 (1019)
+++-..++|...+.++.+|..|++.+||||||||||++.++|.....+ ..+..+|+||..|||+.. +..|+|||+||
T Consensus 371 SEFdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~-y~kqTlNQLLvEmDGF~q--NeGiIvigATN 447 (752)
T KOG0734|consen 371 SEFDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQH-YAKQTLNQLLVEMDGFKQ--NEGIIVIGATN 447 (752)
T ss_pred cchhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHH-HHHHHHHHHHHHhcCcCc--CCceEEEeccC
Confidence 999999999999999999999999999999999999999998766444 889999999999999965 45799999999
Q ss_pred CCCCCcHHHHh--hCCCCcccCCCCHHHHHHHHHHHHhccCCCCccCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 001735 879 RPFDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLE 956 (1019)
Q Consensus 879 ~p~~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeG~SgaDL~~L~~~Aa~~Airr~l~ 956 (1019)
.|+.||+++.| |||+.|.||.||...|.+||+.|+.+..+..++|+..||+-|.||+|+||.||++.|+..|....
T Consensus 448 fpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dg-- 525 (752)
T KOG0734|consen 448 FPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDG-- 525 (752)
T ss_pred ChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcC--
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999998876542
Q ss_pred HHHhcCCCCCCCCccCCCHHHHHHHHHhhCCCc
Q 001735 957 EERKRGKNDAAPVLRPLKLEDFIQSKAKVGPSV 989 (1019)
Q Consensus 957 ~~~~~~~~~~~~~~~pLT~eDF~~Al~kv~PS~ 989 (1019)
...++|.|++.|..++.--.
T Consensus 526 -------------a~~VtM~~LE~akDrIlMG~ 545 (752)
T KOG0734|consen 526 -------------AEMVTMKHLEFAKDRILMGP 545 (752)
T ss_pred -------------cccccHHHHhhhhhheeecc
Confidence 25699999999999886433
No 15
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-38 Score=384.37 Aligned_cols=362 Identities=20% Similarity=0.226 Sum_probs=246.9
Q ss_pred HHHHHHHHHhhcCCeEEEEcCchhh--hhcccCCccHHHHHHHHHHHHhcCC--CCEEEEecccCCCCCccccccccccc
Q 001735 473 AMEALCEVLHSTQPLIVYFPDSSLW--LSRAVPRCNRKEFVRKVEEMFDQLS--GPVVLICGQNKNETGPKEKEKFTMIL 548 (1019)
Q Consensus 473 ~i~~L~e~~~~~~p~Iiff~eid~~--~~~~~~~~~~~~~~s~~~~~l~~l~--g~v~vI~~~~~~d~~~~~~~~~~~~~ 548 (1019)
=+.-|||||+++||+|||||||||| +|+++|+|+|++||++|+++||+|+ |+||||
T Consensus 351 qlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvi-------------------- 410 (1080)
T KOG0732|consen 351 QLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVI-------------------- 410 (1080)
T ss_pred HHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEE--------------------
Confidence 3456999999999999999999999 8889999999999999999999998 555555
Q ss_pred cccccccCCCCchhhhhcccccCCCcchHHHHh--cccceEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHh
Q 001735 549 PNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLE 626 (1019)
Q Consensus 549 ~~~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~r--rFe~~~eI~LPdee~Rl~Il~Iht~k~~~~~~~~~~v~~l~~~l~ 626 (1019)
|+|||+|-||+||+| ||+++|||+||+.++|.+|+.|||.+ |.......-...+++ .
T Consensus 411 ------------------gATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrk-w~~~i~~~l~~~la~--~ 469 (1080)
T KOG0732|consen 411 ------------------GATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRK-WEPPISRELLLWLAE--E 469 (1080)
T ss_pred ------------------cccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccC-CCCCCCHHHHHHHHH--h
Confidence 777777777778877 99999999999999999999999544 335555556777777 8
Q ss_pred hccCCccccccccccchhhhHHhhhhHHhhhcccccccCCCCCccCCceeecHHHHHHHHHHhhhhhhccCC-Cccc---
Q 001735 627 DHELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQETASRK-PTQN--- 702 (1019)
Q Consensus 627 t~~~~gaDL~~Lct~~~~~s~~~~~~~V~~A~s~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~~~~~~~-~~~~--- 702 (1019)
+.||.||||++|||+++++..++.++++ +.+..+..++...++|.-.+|..|+.++.|+..+... +..+
T Consensus 470 t~gy~gaDlkaLCTeAal~~~~r~~Pq~-------y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~~~~~s~Pl~~ 542 (1080)
T KOG0732|consen 470 TSGYGGADLKALCTEAALIALRRSFPQI-------YSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRRSSVIFSRPLST 542 (1080)
T ss_pred ccccchHHHHHHHHHHhhhhhccccCee-------ecccccccccchhhhhhhHhhhhhhhccCCCCCccccCCCCCCCc
Confidence 8899999999999999999977655544 4444555577888889999999999999998655321 1111
Q ss_pred -ccccch-hhhhhhhcccccCCCCCCcccccccChHHHHHHHHHHHHcccCCchh-hccCCCCCCCceEEEEcCCCChHH
Q 001735 703 -LKNLAK-DEYESNFVSAVVPPGEIGVRFDDIGALEDVKKALNELVILPMRRPDL-FSRGNLLRPCKGILLFGPPGTGKT 779 (1019)
Q Consensus 703 -l~~~~~-~e~e~~~~~~ii~~~e~~vtfdDIgGle~vk~~L~e~V~~pL~~pel-f~~~gl~~p~~gVLL~GPpGTGKT 779 (1019)
++.+.. ..+.. .+.+ +.-+......+.+...+....-+. |.-.-+. ...++|.|..|.|.+
T Consensus 543 ~~~~ll~~~~~~~-~iq~-------------~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic--~~~lli~~~~~~g~~ 606 (1080)
T KOG0732|consen 543 YLKPLLPFQDALE-DIQG-------------LMDVASSMAKIEEHLKLLVRSFESNFAIRLIC--RPRLLINGGKGSGQD 606 (1080)
T ss_pred ceecccchHHHHH-Hhhc-------------chhHHhhhhhHHHHhHHHHHhhhcccchhhhc--CcHHhcCCCcccccC
Confidence 111110 00000 0111 111222222222222221111111 1111111 234889999999999
Q ss_pred HHHHHHHHHh-CCcEEEEeccccchhh-hhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHH
Q 001735 780 LLAKALATEA-GANFISITGSTLTSKW-FGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFM 857 (1019)
Q Consensus 780 ~LArAIA~el-g~~fi~Is~seL~s~~-~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL 857 (1019)
++..||.+.+ +.++.....+.++.+. ....+..+..+|.+|++..||||||.++|.|....... +...|+
T Consensus 607 ~lg~aIlh~~~~~~v~s~~issll~d~~~~~~~~~iv~i~~eaR~~~psi~~ip~~d~w~~~~p~s--------~~~~~~ 678 (1080)
T KOG0732|consen 607 YLGPAILHRLEGLPVQSLDISSLLSDEGTEDLEEEIVHIFMEARKTTPSIVFIPNVDEWARVIPVS--------FLEEFL 678 (1080)
T ss_pred cccHHHHHHHhccchHHHHHHHHHhccccccHHHHHHHHHHHHhccCCceeeccchhhhhhcCcch--------hhhcch
Confidence 9999999988 8898888888887776 67789999999999999999999999999997554332 233444
Q ss_pred hhhccccccCCCcEEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHh
Q 001735 858 SAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLA 914 (1019)
Q Consensus 858 ~~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~ 914 (1019)
..++... ....|..+-+-...+.-.+ .....+..|..+.+..+|+..++
T Consensus 679 ~~l~~~~--~~t~i~e~~t~~~~~~~~~------~~~~t~~~p~~~s~~~ff~r~I~ 727 (1080)
T KOG0732|consen 679 SSLDEKA--LSTPILELHTWDTSFESVN------KSVVTLSKPSAESTGAFFKRLIR 727 (1080)
T ss_pred hcchhhh--hccchhhhccccccccccC------ccccccccchhhhhHHHHHHHHH
Confidence 4443221 1112222222111100000 12334556788888777777665
No 16
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.1e-38 Score=354.99 Aligned_cols=281 Identities=45% Similarity=0.771 Sum_probs=253.5
Q ss_pred CCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 001735 723 GEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT 802 (1019)
Q Consensus 723 ~e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~ 802 (1019)
....+.|+|+.|++.+++.+.+++.+|+.++++|... ..|.+++||+||||+|||+|++|||.++++.|+.+++++|.
T Consensus 146 ~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl--r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLt 223 (428)
T KOG0740|consen 146 TLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL--REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLT 223 (428)
T ss_pred cCCcccccCCcchhhHHHHhhhhhhhcccchHhhhcc--ccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhh
Confidence 3456899999999999999999999999999999754 47889999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCC
Q 001735 803 SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFD 882 (1019)
Q Consensus 803 s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~ 882 (1019)
++|.|+.++.++.+|..|+..+|+||||||||.++..| ...+++..+++..+|+..+++......++|+||||||.|+.
T Consensus 224 sK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~R-s~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e 302 (428)
T KOG0740|consen 224 SKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKR-SDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWE 302 (428)
T ss_pred hhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhc-CCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchH
Confidence 99999999999999999999999999999999999998 55578889999999999999999888899999999999999
Q ss_pred CcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccC-CCCccCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001735 883 LDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHES-LESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKR 961 (1019)
Q Consensus 883 LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~-l~~dvdl~~LA~~TeG~SgaDL~~L~~~Aa~~Airr~l~~~~~~ 961 (1019)
+|++++|||...+++|+|+.+.|..+|+.++.... ...+.+++.||+.|+||+++||.++|.+|++..++...... .
T Consensus 303 ~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~~--~ 380 (428)
T KOG0740|consen 303 LDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGTT--D 380 (428)
T ss_pred HHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccch--h
Confidence 99999999999999999999999999999998773 33567899999999999999999999999999988765421 1
Q ss_pred CCCCCCCCccCCCHHHHHHHHHhhCCCcccchhcHHHHHHHHHHhCCCC
Q 001735 962 GKNDAAPVLRPLKLEDFIQSKAKVGPSVAYDAASMNELRKWNEQYGEGG 1010 (1019)
Q Consensus 962 ~~~~~~~~~~pLT~eDF~~Al~kv~PS~s~~~~~m~~lvkW~digG~~g 1010 (1019)
.........++++..||..|++.++|+++... +..+.+|++.+|..+
T Consensus 381 ~~~~~~~~~r~i~~~df~~a~~~i~~~~s~~~--l~~~~~~~~~fg~~~ 427 (428)
T KOG0740|consen 381 LEFIDADKIRPITYPDFKNAFKNIKPSVSLEG--LEKYEKWDKEFGSSE 427 (428)
T ss_pred hhhcchhccCCCCcchHHHHHHhhccccCccc--cchhHHHhhhhcccc
Confidence 11233456689999999999999999998754 456889999999864
No 17
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-36 Score=316.19 Aligned_cols=247 Identities=35% Similarity=0.597 Sum_probs=225.5
Q ss_pred CCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchh
Q 001735 725 IGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSK 804 (1019)
Q Consensus 725 ~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s~ 804 (1019)
|..+++-|||++.+++.+++.+++|..+|++|...| +..|+|+|||||||||||.||+|+|++..+.|+.++++++..+
T Consensus 142 PDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLG-IaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk 220 (404)
T KOG0728|consen 142 PDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALG-IAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK 220 (404)
T ss_pred CccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcC-CCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHH
Confidence 567899999999999999999999999999999999 5667999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCC---CchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCC
Q 001735 805 WFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGG---AFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPF 881 (1019)
Q Consensus 805 ~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~---~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~ 881 (1019)
|.|+....++.+|-.|+.++|+|||.||||++...|.. ++++++ .+.+-+|++++||+.. ..++-||.+||+.+
T Consensus 221 ~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsev-qrtmlellnqldgfea--tknikvimatnrid 297 (404)
T KOG0728|consen 221 YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEV-QRTMLELLNQLDGFEA--TKNIKVIMATNRID 297 (404)
T ss_pred HhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHH-HHHHHHHHHhcccccc--ccceEEEEeccccc
Confidence 99999999999999999999999999999999877643 223444 4555689999999954 45788999999999
Q ss_pred CCcHHHHh--hCCCCcccCCCCHHHHHHHHHHHHhccCCCCccCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 001735 882 DLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEER 959 (1019)
Q Consensus 882 ~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeG~SgaDL~~L~~~Aa~~Airr~l~~~~ 959 (1019)
.||++++| |+++.|.||+|+.+.|.+||+.+-++.++...+++..+|....|.||++++.+|.+|.+.|+|+- +
T Consensus 298 ild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrer----r 373 (404)
T KOG0728|consen 298 ILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRER----R 373 (404)
T ss_pred cccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHh----h
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999872 2
Q ss_pred hcCCCCCCCCccCCCHHHHHHHHHhhCCCcc
Q 001735 960 KRGKNDAAPVLRPLKLEDFIQSKAKVGPSVA 990 (1019)
Q Consensus 960 ~~~~~~~~~~~~pLT~eDF~~Al~kv~PS~s 990 (1019)
..+|.+||+-|..++-..-+
T Consensus 374 -----------vhvtqedfemav~kvm~k~~ 393 (404)
T KOG0728|consen 374 -----------VHVTQEDFEMAVAKVMQKDS 393 (404)
T ss_pred -----------ccccHHHHHHHHHHHHhccc
Confidence 56999999999999865443
No 18
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-36 Score=318.54 Aligned_cols=245 Identities=34% Similarity=0.600 Sum_probs=226.3
Q ss_pred CCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch
Q 001735 724 EIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS 803 (1019)
Q Consensus 724 e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s 803 (1019)
.|..+++||||++.+++.|.+.|.+|+.+++.|.+.| ++||+|+|+|||||||||++|+|.|...++.|..+.++.++.
T Consensus 165 kPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lg-i~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQ 243 (424)
T KOG0652|consen 165 KPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLG-IRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 243 (424)
T ss_pred CCcccccccccHHHHHHHHHHHhccccccHHHHHhcC-CCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHh
Confidence 4667899999999999999999999999999999999 789999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCC---chhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCC
Q 001735 804 KWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGA---FEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP 880 (1019)
Q Consensus 804 ~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~---~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p 880 (1019)
.|.|...+.++..|..|+..+|+||||||+|.+..+|..+ ++.++ .+.+-+|+++|||+.+ ..+|-||++||+.
T Consensus 244 MfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREV-QRTMLELLNQLDGFss--~~~vKviAATNRv 320 (424)
T KOG0652|consen 244 MFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREV-QRTMLELLNQLDGFSS--DDRVKVIAATNRV 320 (424)
T ss_pred hhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHH-HHHHHHHHHhhcCCCC--ccceEEEeecccc
Confidence 9999999999999999999999999999999999887653 23444 4555689999999965 4679999999999
Q ss_pred CCCcHHHHh--hCCCCcccCCCCHHHHHHHHHHHHhccCCCCccCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 001735 881 FDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEE 958 (1019)
Q Consensus 881 ~~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeG~SgaDL~~L~~~Aa~~Airr~l~~~ 958 (1019)
+.|||+++| |+++.|.||.|+.+.|..|++.|.++..+.+++++++||+.|++|+|+..+++|.+|.+.|+|+.-
T Consensus 321 DiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~a--- 397 (424)
T KOG0652|consen 321 DILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGA--- 397 (424)
T ss_pred cccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhccc---
Confidence 999999999 999999999999999999999999999999999999999999999999999999999999998731
Q ss_pred HhcCCCCCCCCccCCCHHHHHHHHHhhCC
Q 001735 959 RKRGKNDAAPVLRPLKLEDFIQSKAKVGP 987 (1019)
Q Consensus 959 ~~~~~~~~~~~~~pLT~eDF~~Al~kv~P 987 (1019)
..|+.+||.+++.++++
T Consensus 398 ------------tev~heDfmegI~eVqa 414 (424)
T KOG0652|consen 398 ------------TEVTHEDFMEGILEVQA 414 (424)
T ss_pred ------------ccccHHHHHHHHHHHHH
Confidence 45899999999988864
No 19
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.8e-36 Score=312.51 Aligned_cols=246 Identities=33% Similarity=0.573 Sum_probs=226.7
Q ss_pred CCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 001735 723 GEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT 802 (1019)
Q Consensus 723 ~e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~ 802 (1019)
..|.+++.||||++-.|+++++.+++|+.+.++|...| +.||+|||+|||||||||+||+|+|++..+.|+.+.+++++
T Consensus 148 ekpdvsy~diggld~qkqeireavelplt~~~ly~qig-idpprgvllygppg~gktml~kava~~t~a~firvvgsefv 226 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIG-IDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 226 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhccchHHHHHHHhC-CCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHH
Confidence 45789999999999999999999999999999999999 78999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCc--hhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCC
Q 001735 803 SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAF--EHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP 880 (1019)
Q Consensus 803 s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~--~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p 880 (1019)
.+|.|+....++.+|..|+..+|+||||||||.+..+|.... ......+++-+|+++|||+.. ..+|-||.+||+.
T Consensus 227 qkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq--~~nvkvimatnra 304 (408)
T KOG0727|consen 227 QKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQ--TTNVKVIMATNRA 304 (408)
T ss_pred HHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCc--ccceEEEEecCcc
Confidence 999999999999999999999999999999999998876532 234456788899999999954 4578999999999
Q ss_pred CCCcHHHHh--hCCCCcccCCCCHHHHHHHHHHHHhccCCCCccCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 001735 881 FDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEE 958 (1019)
Q Consensus 881 ~~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeG~SgaDL~~L~~~Aa~~Airr~l~~~ 958 (1019)
+.|||+++| |+++.|.||+|+..+++-+|..+..+..+.+++|++.+..+-+..|++||..+|++|.+.|+|+.
T Consensus 305 dtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~n---- 380 (408)
T KOG0727|consen 305 DTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVREN---- 380 (408)
T ss_pred cccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhc----
Confidence 999999999 99999999999999999999999999999999999999999999999999999999999999872
Q ss_pred HhcCCCCCCCCccCCCHHHHHHHHHhhC
Q 001735 959 RKRGKNDAAPVLRPLKLEDFIQSKAKVG 986 (1019)
Q Consensus 959 ~~~~~~~~~~~~~pLT~eDF~~Al~kv~ 986 (1019)
+ -.+...||++|.+.+.
T Consensus 381 r-----------yvvl~kd~e~ay~~~v 397 (408)
T KOG0727|consen 381 R-----------YVVLQKDFEKAYKTVV 397 (408)
T ss_pred c-----------eeeeHHHHHHHHHhhc
Confidence 1 3478899999987663
No 20
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=7.2e-36 Score=314.77 Aligned_cols=243 Identities=30% Similarity=0.471 Sum_probs=214.3
Q ss_pred CcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhh
Q 001735 726 GVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKW 805 (1019)
Q Consensus 726 ~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s~~ 805 (1019)
+++|+|++|+++.|...+-++.+ |.+|+.|..+. |++||+|||||||||++|+|+|+++..||+.+.+.+|++.+
T Consensus 117 ~it~ddViGqEeAK~kcrli~~y-LenPe~Fg~WA----PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGeh 191 (368)
T COG1223 117 DITLDDVIGQEEAKRKCRLIMEY-LENPERFGDWA----PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEH 191 (368)
T ss_pred cccHhhhhchHHHHHHHHHHHHH-hhChHHhcccC----cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHH
Confidence 58999999999999988766555 89999998764 58999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcH
Q 001735 806 FGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDD 885 (1019)
Q Consensus 806 ~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~LD~ 885 (1019)
+|+....++.+|+.|++.+|||+||||+|.+.-.|.-..-......++|.||+.|||+. ++..|+.||+||+|+.||+
T Consensus 192 VGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~--eneGVvtIaaTN~p~~LD~ 269 (368)
T COG1223 192 VGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIK--ENEGVVTIAATNRPELLDP 269 (368)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcc--cCCceEEEeecCChhhcCH
Confidence 99999999999999999999999999999998665422223334678899999999995 5678999999999999999
Q ss_pred HHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCCCccCHHHHHHHhcCCCHHHHHHH-HHHHHHHHHHHHHHHHHhcCCC
Q 001735 886 AVIRRLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNL-CIAAAYRPVQELLEEERKRGKN 964 (1019)
Q Consensus 886 aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeG~SgaDL~~L-~~~Aa~~Airr~l~~~~~~~~~ 964 (1019)
++++||...|.|.+|+.++|.+|++.+++..++.-+.++..+++.|.|+||+||+.- +..|.++|+.+. +
T Consensus 270 aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed----~----- 340 (368)
T COG1223 270 AIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAED----R----- 340 (368)
T ss_pred HHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhc----h-----
Confidence 999999999999999999999999999999999999999999999999999999854 455666666552 2
Q ss_pred CCCCCccCCCHHHHHHHHHhhCCCcc
Q 001735 965 DAAPVLRPLKLEDFIQSKAKVGPSVA 990 (1019)
Q Consensus 965 ~~~~~~~pLT~eDF~~Al~kv~PS~s 990 (1019)
..|+.+||..|+++.++...
T Consensus 341 ------e~v~~edie~al~k~r~~r~ 360 (368)
T COG1223 341 ------EKVEREDIEKALKKERKRRA 360 (368)
T ss_pred ------hhhhHHHHHHHHHhhccccC
Confidence 45889999999998766543
No 21
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-36 Score=322.90 Aligned_cols=244 Identities=37% Similarity=0.620 Sum_probs=224.1
Q ss_pred CCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch
Q 001735 724 EIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS 803 (1019)
Q Consensus 724 e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s 803 (1019)
.|..+|.||||++.+++.|++.|++|+.+|++|...| ++||+||+|||+||||||.||+|+|+...+.|+.+.+++|+.
T Consensus 179 aP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemG-ikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQ 257 (440)
T KOG0726|consen 179 APQETYADIGGLESQIQEIKESVELPLTHPEYYEEMG-IKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQ 257 (440)
T ss_pred CchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcC-CCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHH
Confidence 3567999999999999999999999999999999999 789999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCC---chhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCC
Q 001735 804 KWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGA---FEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP 880 (1019)
Q Consensus 804 ~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~---~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p 880 (1019)
+|.|+..+.++++|..|..++|+|+||||||++..+|..+ ++.+. .+.+-+||+++||+.+. ..|-||.+||+.
T Consensus 258 kylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEi-QrtmLELLNQldGFdsr--gDvKvimATnri 334 (440)
T KOG0726|consen 258 KYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREI-QRTMLELLNQLDGFDSR--GDVKVIMATNRI 334 (440)
T ss_pred HHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHH-HHHHHHHHHhccCcccc--CCeEEEEecccc
Confidence 9999999999999999999999999999999999877543 23444 44555999999999764 468899999999
Q ss_pred CCCcHHHHh--hCCCCcccCCCCHHHHHHHHHHHHhccCCCCccCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 001735 881 FDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEE 958 (1019)
Q Consensus 881 ~~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeG~SgaDL~~L~~~Aa~~Airr~l~~~ 958 (1019)
+.|||+++| |+++.|.|+.||...+..||..|.....+..+++++.+...-+.+||+||+++|.+|.+.|+|+-
T Consensus 335 e~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRer---- 410 (440)
T KOG0726|consen 335 ETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRER---- 410 (440)
T ss_pred cccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHH----
Confidence 999999999 99999999999999999999999999999999999999988899999999999999999999873
Q ss_pred HhcCCCCCCCCccCCCHHHHHHHHHhhC
Q 001735 959 RKRGKNDAAPVLRPLKLEDFIQSKAKVG 986 (1019)
Q Consensus 959 ~~~~~~~~~~~~~pLT~eDF~~Al~kv~ 986 (1019)
+ ..+|++||..|.++|-
T Consensus 411 R-----------m~vt~~DF~ka~e~V~ 427 (440)
T KOG0726|consen 411 R-----------MKVTMEDFKKAKEKVL 427 (440)
T ss_pred H-----------hhccHHHHHHHHHHHH
Confidence 2 3589999999998873
No 22
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-35 Score=352.95 Aligned_cols=249 Identities=37% Similarity=0.651 Sum_probs=227.6
Q ss_pred CCCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 001735 722 PGEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTL 801 (1019)
Q Consensus 722 ~~e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL 801 (1019)
.++++++|.|+.|+++++++|.|+|.+ |++|+.|.+.| .+.|+|+||+||||||||.||+|+|.|+|+||+.++++++
T Consensus 303 ~~~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lG-AKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEF 380 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELG-AKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEF 380 (774)
T ss_pred CCCCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcC-CcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHH
Confidence 345679999999999999999999987 99999999999 6889999999999999999999999999999999999999
Q ss_pred chhhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCC---CchhHHHHHHHHHHHhhhccccccCCCcEEEEEecC
Q 001735 802 TSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGG---AFEHEATRRMRNEFMSAWDGLRSKESQKILILGATN 878 (1019)
Q Consensus 802 ~s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~---~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN 878 (1019)
+..+.|.....++.+|..|+...||||||||||.+...+.+ ...+......+|+|+..|||+... ..|+|+++||
T Consensus 381 vE~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~--~~vi~~a~tn 458 (774)
T KOG0731|consen 381 VEMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS--KGVIVLAATN 458 (774)
T ss_pred HHHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC--CcEEEEeccC
Confidence 99999988999999999999999999999999999988842 233455678899999999999653 6799999999
Q ss_pred CCCCCcHHHHh--hCCCCcccCCCCHHHHHHHHHHHHhccCCC-CccCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Q 001735 879 RPFDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELL 955 (1019)
Q Consensus 879 ~p~~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeG~SgaDL~~L~~~Aa~~Airr~l 955 (1019)
+++.||++++| ||++.|.++.|+...|..|++.|+....+. +++++..||.+|.||+|+||.++|++|+..|+|+.
T Consensus 459 r~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~- 537 (774)
T KOG0731|consen 459 RPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKG- 537 (774)
T ss_pred CccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhc-
Confidence 99999999999 999999999999999999999999998885 78899999999999999999999999999998873
Q ss_pred HHHHhcCCCCCCCCccCCCHHHHHHHHHhhCCCc
Q 001735 956 EEERKRGKNDAAPVLRPLKLEDFIQSKAKVGPSV 989 (1019)
Q Consensus 956 ~~~~~~~~~~~~~~~~pLT~eDF~~Al~kv~PS~ 989 (1019)
...|+..||..|++.+....
T Consensus 538 --------------~~~i~~~~~~~a~~Rvi~G~ 557 (774)
T KOG0731|consen 538 --------------LREIGTKDLEYAIERVIAGM 557 (774)
T ss_pred --------------cCccchhhHHHHHHHHhccc
Confidence 25699999999999766543
No 23
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=7.2e-35 Score=334.32 Aligned_cols=247 Identities=32% Similarity=0.561 Sum_probs=223.7
Q ss_pred CCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch
Q 001735 724 EIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS 803 (1019)
Q Consensus 724 e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s 803 (1019)
.|.++|+||||++.+++.|++.+.+|+.+|++|...| +.+++++|||||||||||++|+++|++++.+|+.+.++++..
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~G-l~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIG-IDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcC-CCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 4679999999999999999999999999999999988 578899999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCc--hhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCC
Q 001735 804 KWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAF--EHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPF 881 (1019)
Q Consensus 804 ~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~--~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~ 881 (1019)
+|.|+.+..++.+|..|+...|+||||||||.++..+.... ......+++.+|+..++++.. ..+++||+|||+++
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~--~~~v~VI~aTN~~d 295 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ--TTNVKVIMATNRAD 295 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC--CCCEEEEEecCCch
Confidence 99999999999999999999999999999999987764321 223455778889999988743 34799999999999
Q ss_pred CCcHHHHh--hCCCCcccCCCCHHHHHHHHHHHHhccCCCCccCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 001735 882 DLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEER 959 (1019)
Q Consensus 882 ~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeG~SgaDL~~L~~~Aa~~Airr~l~~~~ 959 (1019)
.+|++++| ||+..|+|++|+.++|..||+.++.+..+..++++..+|..|+||+|+||.++|.+|++.|+++.
T Consensus 296 ~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~----- 370 (398)
T PTZ00454 296 TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKN----- 370 (398)
T ss_pred hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC-----
Confidence 99999998 99999999999999999999999999888899999999999999999999999999999998762
Q ss_pred hcCCCCCCCCccCCCHHHHHHHHHhhCCC
Q 001735 960 KRGKNDAAPVLRPLKLEDFIQSKAKVGPS 988 (1019)
Q Consensus 960 ~~~~~~~~~~~~pLT~eDF~~Al~kv~PS 988 (1019)
...|+++||.+|+.++...
T Consensus 371 ----------~~~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 371 ----------RYVILPKDFEKGYKTVVRK 389 (398)
T ss_pred ----------CCccCHHHHHHHHHHHHhc
Confidence 1469999999999998554
No 24
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-35 Score=308.32 Aligned_cols=246 Identities=35% Similarity=0.592 Sum_probs=225.4
Q ss_pred CCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch
Q 001735 724 EIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS 803 (1019)
Q Consensus 724 e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s 803 (1019)
.+.+++.|+||..+.++.|++.|+.|+.+|+.|.+.| +.||+|||||||||||||.+|+|+|+..++.|+.+-.++|+.
T Consensus 171 kpdvty~dvggckeqieklrevve~pll~perfv~lg-idppkgvllygppgtgktl~aravanrtdacfirvigselvq 249 (435)
T KOG0729|consen 171 KPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLG-IDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQ 249 (435)
T ss_pred CCCcccccccchHHHHHHHHHHHhccccCHHHHhhcC-CCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHH
Confidence 4789999999999999999999999999999999999 789999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCC---chhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCC
Q 001735 804 KWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGA---FEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP 880 (1019)
Q Consensus 804 ~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~---~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p 880 (1019)
+|+|+....++.+|+.|+..+.||||+||||.+.+.|... .++++. +.+-+++.+|||+.+ ..++-|+.+||+|
T Consensus 250 kyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevq-rtmleli~qldgfdp--rgnikvlmatnrp 326 (435)
T KOG0729|consen 250 KYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQ-RTMLELINQLDGFDP--RGNIKVLMATNRP 326 (435)
T ss_pred HHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHH-HHHHHHHHhccCCCC--CCCeEEEeecCCC
Confidence 9999999999999999999999999999999999887643 244554 455589999999965 4578899999999
Q ss_pred CCCcHHHHh--hCCCCcccCCCCHHHHHHHHHHHHhccCCCCccCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 001735 881 FDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEE 958 (1019)
Q Consensus 881 ~~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeG~SgaDL~~L~~~Aa~~Airr~l~~~ 958 (1019)
+.|||+++| |+++.+.|.+|+.+.|..||+.|.+...+..++.++-||..+..-+|++|+.+|.+|.+.|++.-
T Consensus 327 dtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairar---- 402 (435)
T KOG0729|consen 327 DTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRAR---- 402 (435)
T ss_pred CCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHH----
Confidence 999999999 99999999999999999999999999999999999999999999999999999999999998762
Q ss_pred HhcCCCCCCCCccCCCHHHHHHHHHhhCCC
Q 001735 959 RKRGKNDAAPVLRPLKLEDFIQSKAKVGPS 988 (1019)
Q Consensus 959 ~~~~~~~~~~~~~pLT~eDF~~Al~kv~PS 988 (1019)
+ ...|..||..|+.++...
T Consensus 403 r-----------k~atekdfl~av~kvvkg 421 (435)
T KOG0729|consen 403 R-----------KVATEKDFLDAVNKVVKG 421 (435)
T ss_pred h-----------hhhhHHHHHHHHHHHHHH
Confidence 2 346889999999988543
No 25
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=5.6e-34 Score=326.96 Aligned_cols=251 Identities=39% Similarity=0.655 Sum_probs=224.8
Q ss_pred CCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch
Q 001735 724 EIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS 803 (1019)
Q Consensus 724 e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s 803 (1019)
.+.++|+||+|++++++.|.+++..|+.+++.|...| ..++++||||||||||||++|+++|++++.+|+.++++++..
T Consensus 125 ~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g-~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 125 SPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVG-IEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcC-CCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 3578999999999999999999999999999999888 678899999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCch--hHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCC
Q 001735 804 KWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFE--HEATRRMRNEFMSAWDGLRSKESQKILILGATNRPF 881 (1019)
Q Consensus 804 ~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~--~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~ 881 (1019)
.|.|+.+..++.+|..|+...|+||||||||.++..+..... .....+.+.+|+..++++.. ..++.||+|||+++
T Consensus 204 ~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~--~~~v~VI~aTn~~~ 281 (389)
T PRK03992 204 KFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP--RGNVKIIAATNRID 281 (389)
T ss_pred hhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC--CCCEEEEEecCChh
Confidence 999999999999999999999999999999999877653321 22345566678888887643 35799999999999
Q ss_pred CCcHHHHh--hCCCCcccCCCCHHHHHHHHHHHHhccCCCCccCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 001735 882 DLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEER 959 (1019)
Q Consensus 882 ~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeG~SgaDL~~L~~~Aa~~Airr~l~~~~ 959 (1019)
.+|++++| ||+..|.|++|+.++|.+||+.++....+..++++..+|..|+||+|+||.++|.+|++.|+++.
T Consensus 282 ~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~----- 356 (389)
T PRK03992 282 ILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDD----- 356 (389)
T ss_pred hCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC-----
Confidence 99999998 99999999999999999999999998888888999999999999999999999999999998761
Q ss_pred hcCCCCCCCCccCCCHHHHHHHHHhhCCCcccc
Q 001735 960 KRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAYD 992 (1019)
Q Consensus 960 ~~~~~~~~~~~~pLT~eDF~~Al~kv~PS~s~~ 992 (1019)
...|+++||.+|+.+++++...+
T Consensus 357 ----------~~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 357 ----------RTEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred ----------CCCcCHHHHHHHHHHHhcccccc
Confidence 14699999999999999887654
No 26
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-35 Score=338.89 Aligned_cols=263 Identities=37% Similarity=0.620 Sum_probs=246.4
Q ss_pred CcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhh
Q 001735 726 GVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKW 805 (1019)
Q Consensus 726 ~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s~~ 805 (1019)
.++ +++||+....+.+++.+.+|+..+.+|...+ .++++++|+|||||||||++++|+|++.++.++.++++++++++
T Consensus 181 ~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g-~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 181 EVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIG-IKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred ccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcC-CCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 356 7999999999999999999999999999888 68999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcC-CeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCc
Q 001735 806 FGDAEKLTKALFSFASKLA-PVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLD 884 (1019)
Q Consensus 806 ~Ge~e~~I~~lF~~Ark~~-PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~LD 884 (1019)
.|+.+..++..|+.|.+++ |+||||||+|.+++++..... ..+++..+++.+++++. ...+++||++||+|..||
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~--~e~Rv~sqlltL~dg~~--~~~~vivl~atnrp~sld 334 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD--VESRVVSQLLTLLDGLK--PDAKVIVLAATNRPDSLD 334 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch--HHHHHHHHHHHHHhhCc--CcCcEEEEEecCCccccC
Confidence 9999999999999999999 999999999999998876533 67899999999999995 456899999999999999
Q ss_pred HHHHh-hCCCCcccCCCCHHHHHHHHHHHHhccCCCCccCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 001735 885 DAVIR-RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKRGK 963 (1019)
Q Consensus 885 ~aLlr-RFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeG~SgaDL~~L~~~Aa~~Airr~l~~~~~~~~ 963 (1019)
++++| ||++.+.+..|+..+|.+|++.+++..+..+++++..+|..|+||+|+||..+|.+|++.++++
T Consensus 335 ~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~---------- 404 (693)
T KOG0730|consen 335 PALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR---------- 404 (693)
T ss_pred hhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh----------
Confidence 99998 9999999999999999999999999999888899999999999999999999999999998876
Q ss_pred CCCCCCccCCCHHHHHHHHHhhCCCcccchhcHHHHHHHHHHhCCCCcccc
Q 001735 964 NDAAPVLRPLKLEDFIQSKAKVGPSVAYDAASMNELRKWNEQYGEGGSRRK 1014 (1019)
Q Consensus 964 ~~~~~~~~pLT~eDF~~Al~kv~PS~s~~~~~m~~lvkW~digG~~g~rkk 1014 (1019)
++++|..|+..++||...+.....+.+.|+||||++..|++
T Consensus 405 ----------~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~e 445 (693)
T KOG0730|consen 405 ----------TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKRE 445 (693)
T ss_pred ----------hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHHH
Confidence 78999999999999998887766688999999999988874
No 27
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=6.8e-33 Score=327.16 Aligned_cols=269 Identities=34% Similarity=0.549 Sum_probs=232.7
Q ss_pred CCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 001735 723 GEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT 802 (1019)
Q Consensus 723 ~e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~ 802 (1019)
..+.++|+||+|++++++++.+++.. +.+++.|...+ ..+++++||+||||||||++|+++|.+++.+|+.++++++.
T Consensus 48 ~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g-~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 125 (495)
T TIGR01241 48 EKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLG-AKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV 125 (495)
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcC-CCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHH
Confidence 35679999999999999999998876 78888888777 57789999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCC--chhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCC
Q 001735 803 SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGA--FEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP 880 (1019)
Q Consensus 803 s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~--~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p 880 (1019)
..+.+..+..++.+|..|+...|+||||||||.+...++.. .......+++++|+..++++.. ...++||+|||++
T Consensus 126 ~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~--~~~v~vI~aTn~~ 203 (495)
T TIGR01241 126 EMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT--NTGVIVIAATNRP 203 (495)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC--CCCeEEEEecCCh
Confidence 99999999999999999999999999999999998876542 1234456788999999998854 4569999999999
Q ss_pred CCCcHHHHh--hCCCCcccCCCCHHHHHHHHHHHHhccCCCCccCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 001735 881 FDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEE 958 (1019)
Q Consensus 881 ~~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeG~SgaDL~~L~~~Aa~~Airr~l~~~ 958 (1019)
+.||++++| ||+..+.+++|+.++|.+||+.++....+..++++..+|..|.||+++||.++|++|+..|+++.
T Consensus 204 ~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~---- 279 (495)
T TIGR01241 204 DVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKN---- 279 (495)
T ss_pred hhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC----
Confidence 999999998 99999999999999999999999998877778899999999999999999999999988776541
Q ss_pred HhcCCCCCCCCccCCCHHHHHHHHHhhCCCcccchhcHHHHHHHHHHhCCCC
Q 001735 959 RKRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAYDAASMNELRKWNEQYGEGG 1010 (1019)
Q Consensus 959 ~~~~~~~~~~~~~pLT~eDF~~Al~kv~PS~s~~~~~m~~lvkW~digG~~g 1010 (1019)
..+|+++||..|+..+..........+.+..+|...|.+.|
T Consensus 280 -----------~~~i~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~A~hEaG 320 (495)
T TIGR01241 280 -----------KTEITMNDIEEAIDRVIAGPEKKSRVISEKEKKLVAYHEAG 320 (495)
T ss_pred -----------CCCCCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHh
Confidence 15799999999999987655444444556666776665544
No 28
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=6.4e-33 Score=320.67 Aligned_cols=246 Identities=36% Similarity=0.583 Sum_probs=220.6
Q ss_pred CCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch
Q 001735 724 EIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS 803 (1019)
Q Consensus 724 e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s 803 (1019)
.+.++|+||+|++++++.|.+++.+|+.+|++|...+ +.+++++|||||||||||++|+++|++++.+|+.+..+++..
T Consensus 177 ~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~g-i~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 177 APLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIG-IKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcC-CCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 3568999999999999999999999999999999888 578899999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCc--hhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCC
Q 001735 804 KWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAF--EHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPF 881 (1019)
Q Consensus 804 ~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~--~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~ 881 (1019)
.|.|+.+..++.+|..|....|+||||||||.++..+.... ......+.+.+|+..++++.. ...+.||+|||+++
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~--~~~V~VI~ATNr~d 333 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS--RGDVKVIMATNRIE 333 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc--cCCeEEEEecCChH
Confidence 99999999999999999999999999999999987764321 222334556788888888743 34689999999999
Q ss_pred CCcHHHHh--hCCCCcccCCCCHHHHHHHHHHHHhccCCCCccCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 001735 882 DLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEER 959 (1019)
Q Consensus 882 ~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeG~SgaDL~~L~~~Aa~~Airr~l~~~~ 959 (1019)
.||++++| ||++.|.|+.|+.++|.+||+.++.+..+..++++..++..++||+|+||.++|.+|++.|+++.
T Consensus 334 ~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~----- 408 (438)
T PTZ00361 334 SLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRER----- 408 (438)
T ss_pred HhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc-----
Confidence 99999997 99999999999999999999999999888889999999999999999999999999999998762
Q ss_pred hcCCCCCCCCccCCCHHHHHHHHHhhCC
Q 001735 960 KRGKNDAAPVLRPLKLEDFIQSKAKVGP 987 (1019)
Q Consensus 960 ~~~~~~~~~~~~pLT~eDF~~Al~kv~P 987 (1019)
...|+++||..|+.++..
T Consensus 409 ----------r~~Vt~~D~~~A~~~v~~ 426 (438)
T PTZ00361 409 ----------RMKVTQADFRKAKEKVLY 426 (438)
T ss_pred ----------CCccCHHHHHHHHHHHHh
Confidence 146999999999999854
No 29
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-33 Score=329.54 Aligned_cols=264 Identities=33% Similarity=0.559 Sum_probs=234.6
Q ss_pred CCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch
Q 001735 724 EIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS 803 (1019)
Q Consensus 724 e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s 803 (1019)
...++|.|+.|.++.++.+.+.|.. ++.|..|...|. +.|+|+||+||||||||+||+|+|.+.++||+.++.++++.
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGa-kiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVe 221 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGA-KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 221 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhccc-ccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhh
Confidence 4679999999999999999999977 899999998884 78899999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCC--chhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCC
Q 001735 804 KWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGA--FEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPF 881 (1019)
Q Consensus 804 ~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~--~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~ 881 (1019)
.++|-....++.+|..|++++||||||||||.+...|..+ ..+.....++|++|+.+||+. .+..|+||++||+|+
T Consensus 222 mfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~--~~~gviviaaTNRpd 299 (596)
T COG0465 222 MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG--GNEGVIVIAATNRPD 299 (596)
T ss_pred hhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCC--CCCceEEEecCCCcc
Confidence 9999999999999999999999999999999998877432 345566789999999999996 456799999999999
Q ss_pred CCcHHHHh--hCCCCcccCCCCHHHHHHHHHHHHhccCCCCccCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 001735 882 DLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEER 959 (1019)
Q Consensus 882 ~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeG~SgaDL~~L~~~Aa~~Airr~l~~~~ 959 (1019)
.||++++| ||++.|.++.||...|++|++.|+....+..++++..+|+.|.||+|+||.+++++|++.|.++.
T Consensus 300 VlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n----- 374 (596)
T COG0465 300 VLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRN----- 374 (596)
T ss_pred cchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhc-----
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999998872
Q ss_pred hcCCCCCCCCccCCCHHHHHHHHHhhCCCcccchh----cHHHHHHHHHHh
Q 001735 960 KRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAYDAA----SMNELRKWNEQY 1006 (1019)
Q Consensus 960 ~~~~~~~~~~~~pLT~eDF~~Al~kv~PS~s~~~~----~m~~lvkW~dig 1006 (1019)
...+++.||.+|+.++..-...... ..+..+-|.+-|
T Consensus 375 ----------~~~i~~~~i~ea~drv~~G~erks~vise~ek~~~AYhEag 415 (596)
T COG0465 375 ----------KKEITMRDIEEAIDRVIAGPERKSRVISEAEKKITAYHEAG 415 (596)
T ss_pred ----------CeeEeccchHHHHHHHhcCcCcCCcccChhhhcchHHHHHH
Confidence 2579999999999999744332221 223445566543
No 30
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.98 E-value=1.6e-31 Score=328.95 Aligned_cols=285 Identities=35% Similarity=0.619 Sum_probs=247.6
Q ss_pred CCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchh
Q 001735 725 IGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSK 804 (1019)
Q Consensus 725 ~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s~ 804 (1019)
+.++|+||+|++++++.|.+++.+|+.+|++|...+ +.+++++|||||||||||+||+++|++++.+|+.++++++.+.
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~g-i~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLG-IEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcC-CCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 468999999999999999999999999999999888 5788999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCc
Q 001735 805 WFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLD 884 (1019)
Q Consensus 805 ~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~LD 884 (1019)
+.|+.+..++.+|..|....|+||||||||.+.+.+... ..+...+++++|+..++++.. ...++||++||.++.+|
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~-~~~~~~~~~~~Ll~~ld~l~~--~~~vivI~atn~~~~ld 328 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEV-TGEVEKRVVAQLLTLMDGLKG--RGRVIVIGATNRPDALD 328 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCC-cchHHHHHHHHHHHHhhcccc--CCCEEEEeecCChhhcC
Confidence 999999999999999999999999999999999876543 234557788999999998843 45799999999999999
Q ss_pred HHHHh--hCCCCcccCCCCHHHHHHHHHHHHhccCCCCccCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001735 885 DAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKRG 962 (1019)
Q Consensus 885 ~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeG~SgaDL~~L~~~Aa~~Airr~l~~~~~~~ 962 (1019)
+++++ ||+..+.++.|+.++|.+||+.+.....+..+.++..++..++||+++||..+|..|++.++++.+.......
T Consensus 329 ~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~ 408 (733)
T TIGR01243 329 PALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINF 408 (733)
T ss_pred HHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 99998 9999999999999999999999998888878889999999999999999999999999999998765221110
Q ss_pred CCC----CCCCccCCCHHHHHHHHHhhCCCcccchhcHHHHHHHHHHhCCCCccc
Q 001735 963 KND----AAPVLRPLKLEDFIQSKAKVGPSVAYDAASMNELRKWNEQYGEGGSRR 1013 (1019)
Q Consensus 963 ~~~----~~~~~~pLT~eDF~~Al~kv~PS~s~~~~~m~~lvkW~digG~~g~rk 1013 (1019)
... .......++++||..|+..++|+...+.....+.+.|+|++|+...|+
T Consensus 409 ~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~~~k~ 463 (733)
T TIGR01243 409 EAEEIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEVKQ 463 (733)
T ss_pred ccccccchhcccccccHHHHHHHHhhccccccchhhccccccchhhcccHHHHHH
Confidence 000 111224689999999999999998766555557789999999887765
No 31
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.98 E-value=3.4e-31 Score=310.33 Aligned_cols=275 Identities=29% Similarity=0.531 Sum_probs=222.9
Q ss_pred CCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------
Q 001735 723 GEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN---------- 792 (1019)
Q Consensus 723 ~e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~---------- 792 (1019)
..+.++|+||||+++.++++++.+.+|+.++++|...+ +.+++++|||||||||||++|+++|++++.+
T Consensus 175 ~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~g-l~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~ 253 (512)
T TIGR03689 175 EVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYD-LKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSY 253 (512)
T ss_pred cCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhcc-CCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCcee
Confidence 34678999999999999999999999999999999888 6788999999999999999999999998644
Q ss_pred EEEEeccccchhhhhhHHHHHHHHHHHHHhc----CCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCC
Q 001735 793 FISITGSTLTSKWFGDAEKLTKALFSFASKL----APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKES 868 (1019)
Q Consensus 793 fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark~----~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~ 868 (1019)
|+.+..+++.++|.|+.+..++.+|..|+.. .|+||||||+|.++..+.....+...++++++|+..|+++.. .
T Consensus 254 fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~--~ 331 (512)
T TIGR03689 254 FLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVES--L 331 (512)
T ss_pred EEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccccc--C
Confidence 6777888999999999999999999998764 699999999999998876544455567889999999999854 3
Q ss_pred CcEEEEEecCCCCCCcHHHHh--hCCCCcccCCCCHHHHHHHHHHHHhcc-CCC---------CccCHHHHHHH------
Q 001735 869 QKILILGATNRPFDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHE-SLE---------SGFQFNELANA------ 930 (1019)
Q Consensus 869 ~~VLVIaTTN~p~~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~-~l~---------~dvdl~~LA~~------ 930 (1019)
.+++||+|||+++.||++++| ||+..|+|++|+.++|.+||+.++... .+. ...++..+++.
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~ 411 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLY 411 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 579999999999999999999 999999999999999999999998742 221 11222333222
Q ss_pred -----------------------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHHhhCC
Q 001735 931 -----------------------TEGYSGSDLKNLCIAAAYRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQSKAKVGP 987 (1019)
Q Consensus 931 -----------------------TeG~SgaDL~~L~~~Aa~~Airr~l~~~~~~~~~~~~~~~~pLT~eDF~~Al~kv~P 987 (1019)
++.+||++|+++|..|...|+++.+... ...|+++|+..|+..--.
T Consensus 412 a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~-----------~~~~~~~~l~~a~~~e~~ 480 (512)
T TIGR03689 412 ATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGG-----------QVGLRIEHLLAAVLDEFR 480 (512)
T ss_pred hhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcC-----------CcCcCHHHHHHHHHHhhc
Confidence 4568899999999999999998876321 147999999999876543
Q ss_pred CcccchhcHHHHHHHHHHhCCCCcc
Q 001735 988 SVAYDAASMNELRKWNEQYGEGGSR 1012 (1019)
Q Consensus 988 S~s~~~~~m~~lvkW~digG~~g~r 1012 (1019)
.- .+.+.-..-.+|.-+-|..|.|
T Consensus 481 ~~-~~~~~~~~~~~w~~~~~~~~~~ 504 (512)
T TIGR03689 481 ES-EDLPNTTNPDDWARISGKKGER 504 (512)
T ss_pred cc-ccCCCCCCHHHHhhhhCCCCCc
Confidence 22 1222222345799998886643
No 32
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.97 E-value=4.5e-31 Score=300.42 Aligned_cols=244 Identities=39% Similarity=0.677 Sum_probs=216.4
Q ss_pred CCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch
Q 001735 724 EIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS 803 (1019)
Q Consensus 724 e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s 803 (1019)
.+.++|+||+|++++++.|.+++..|+.+++.|...+ ..+++++||+||||||||++|+++|++++.+|+.+.+.++..
T Consensus 116 ~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g-~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 116 RPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVG-IEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR 194 (364)
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcC-CCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH
Confidence 4678999999999999999999999999999999888 578899999999999999999999999999999999999998
Q ss_pred hhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCc--hhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCC
Q 001735 804 KWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAF--EHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPF 881 (1019)
Q Consensus 804 ~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~--~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~ 881 (1019)
.+.++....++.+|..++...|+||||||+|.+...+.... ......+.+.+++..++++.. ..++.||+|||.++
T Consensus 195 ~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~--~~~v~vI~ttn~~~ 272 (364)
T TIGR01242 195 KYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP--RGNVKVIAATNRPD 272 (364)
T ss_pred HhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC--CCCEEEEEecCChh
Confidence 99999999999999999999999999999999987654322 122334556677777777633 34799999999999
Q ss_pred CCcHHHHh--hCCCCcccCCCCHHHHHHHHHHHHhccCCCCccCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 001735 882 DLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEER 959 (1019)
Q Consensus 882 ~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeG~SgaDL~~L~~~Aa~~Airr~l~~~~ 959 (1019)
.+|+++++ ||++.+.|+.|+.++|.+||+.++....+..++++..+|..|+||+|+||.++|.+|++.|+++.
T Consensus 273 ~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~----- 347 (364)
T TIGR01242 273 ILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREE----- 347 (364)
T ss_pred hCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-----
Confidence 99999998 99999999999999999999999988887778899999999999999999999999999998762
Q ss_pred hcCCCCCCCCccCCCHHHHHHHHHhh
Q 001735 960 KRGKNDAAPVLRPLKLEDFIQSKAKV 985 (1019)
Q Consensus 960 ~~~~~~~~~~~~pLT~eDF~~Al~kv 985 (1019)
...|+.+||.+|+.++
T Consensus 348 ----------~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 348 ----------RDYVTMDDFIKAVEKV 363 (364)
T ss_pred ----------CCccCHHHHHHHHHHh
Confidence 1469999999999876
No 33
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.1e-31 Score=289.19 Aligned_cols=243 Identities=34% Similarity=0.643 Sum_probs=219.4
Q ss_pred CcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhh
Q 001735 726 GVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKW 805 (1019)
Q Consensus 726 ~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s~~ 805 (1019)
.++|+.++|+.++..++++.|..|+.+|++|.+.+ ++||++++||||||||||.+|++||..+|++|+.+.++.+.++|
T Consensus 128 ~~s~~~~ggl~~qirelre~ielpl~np~lf~rvg-Ik~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ky 206 (388)
T KOG0651|consen 128 NISFENVGGLFYQIRELREVIELPLTNPELFLRVG-IKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKY 206 (388)
T ss_pred ccCHHHhCChHHHHHHHHhheEeeccCchhccccC-CCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhh
Confidence 47899999999999999999999999999999988 78999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCC--chhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCC
Q 001735 806 FGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGA--FEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDL 883 (1019)
Q Consensus 806 ~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~--~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~L 883 (1019)
.|++.+.|++.|..|+.+.|||||+||||++.+.+... .......+++.+|+.+|+++.. ..+|-+|+|||+|+.|
T Consensus 207 iGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~--l~rVk~ImatNrpdtL 284 (388)
T KOG0651|consen 207 IGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDT--LHRVKTIMATNRPDTL 284 (388)
T ss_pred cccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchh--cccccEEEecCCcccc
Confidence 99999999999999999999999999999999887432 2234445666778888888743 4679999999999999
Q ss_pred cHHHHh--hCCCCcccCCCCHHHHHHHHHHHHhccCCCCccCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001735 884 DDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKR 961 (1019)
Q Consensus 884 D~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeG~SgaDL~~L~~~Aa~~Airr~l~~~~~~ 961 (1019)
+++|+| |+++.+.+|+|+...|..|++.+.........+|.+.+.+.++||.|+|+++.|++|.+.|+++.-
T Consensus 285 dpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~------ 358 (388)
T KOG0651|consen 285 DPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEER------ 358 (388)
T ss_pred chhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchhh------
Confidence 999999 999999999999999999999998888888889999999999999999999999999988877631
Q ss_pred CCCCCCCCccCCCHHHHHHHHHhhC
Q 001735 962 GKNDAAPVLRPLKLEDFIQSKAKVG 986 (1019)
Q Consensus 962 ~~~~~~~~~~pLT~eDF~~Al~kv~ 986 (1019)
..+-+|||..++.++.
T Consensus 359 ---------~~vl~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 359 ---------DEVLHEDFMKLVRKQA 374 (388)
T ss_pred ---------HHHhHHHHHHHHHHHH
Confidence 3467899999988764
No 34
>CHL00176 ftsH cell division protein; Validated
Probab=99.97 E-value=3.9e-30 Score=309.65 Aligned_cols=244 Identities=34% Similarity=0.582 Sum_probs=216.1
Q ss_pred CCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch
Q 001735 724 EIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS 803 (1019)
Q Consensus 724 e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s 803 (1019)
+..++|+||+|++++++.+.+++.. +..++.|...+ ..++++|||+||||||||+||+++|.+++.||+.++++++..
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g-~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~ 254 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVG-AKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVE 254 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhcc-CCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHH
Confidence 4568999999999999999998866 78888888777 567899999999999999999999999999999999999988
Q ss_pred hhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCC--chhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCC
Q 001735 804 KWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGA--FEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPF 881 (1019)
Q Consensus 804 ~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~--~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~ 881 (1019)
.+.+.....++.+|..|+...||||||||||.+...+... ..+.....++++|+..++++.. +..++||+|||+++
T Consensus 255 ~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~--~~~ViVIaaTN~~~ 332 (638)
T CHL00176 255 MFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG--NKGVIVIAATNRVD 332 (638)
T ss_pred HhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC--CCCeeEEEecCchH
Confidence 8888888899999999999999999999999998765432 2234456788899999998743 45799999999999
Q ss_pred CCcHHHHh--hCCCCcccCCCCHHHHHHHHHHHHhccCCCCccCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 001735 882 DLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEER 959 (1019)
Q Consensus 882 ~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeG~SgaDL~~L~~~Aa~~Airr~l~~~~ 959 (1019)
.+|++++| ||++.+.|++|+.++|.+||+.++....+..++++..+|..|.||+|+||.++|++|+..+.++.
T Consensus 333 ~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~----- 407 (638)
T CHL00176 333 ILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRK----- 407 (638)
T ss_pred hhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC-----
Confidence 99999998 99999999999999999999999998777788899999999999999999999999988876541
Q ss_pred hcCCCCCCCCccCCCHHHHHHHHHhhC
Q 001735 960 KRGKNDAAPVLRPLKLEDFIQSKAKVG 986 (1019)
Q Consensus 960 ~~~~~~~~~~~~pLT~eDF~~Al~kv~ 986 (1019)
...||++||..|+.++.
T Consensus 408 ----------~~~It~~dl~~Ai~rv~ 424 (638)
T CHL00176 408 ----------KATITMKEIDTAIDRVI 424 (638)
T ss_pred ----------CCCcCHHHHHHHHHHHH
Confidence 14699999999999883
No 35
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.9e-30 Score=285.11 Aligned_cols=243 Identities=19% Similarity=0.259 Sum_probs=191.0
Q ss_pred CcccccccccccccchhhHHHHHHhhhhcccCcccccccccccCCCCCceeeccCCChhHHHHHHHHHHHhhcCCcEEEe
Q 001735 175 EKINISWDTFPYYINENTKSLLVECVGSHLKHKKFTATFGARLTSSSGRILLRSVPGTELYRERLIRALARELQVPLLVL 254 (1019)
Q Consensus 175 ~~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~~l~~~s~rILL~~~pgsE~Yqe~L~kALA~~~~a~LL~l 254 (1019)
+.-+|||++.+.+ +....-|.+++-.+|+|++++.+- .+. +.+.+||+|||| ....+||||.||+.+|.++=+
T Consensus 144 e~PdvtY~dIGGL--~~Qi~EirE~VELPL~~PElF~~~--GI~-PPKGVLLYGPPG--TGKTLLAkAVA~~T~AtFIrv 216 (406)
T COG1222 144 EKPDVTYEDIGGL--DEQIQEIREVVELPLKNPELFEEL--GID-PPKGVLLYGPPG--TGKTLLAKAVANQTDATFIRV 216 (406)
T ss_pred cCCCCChhhccCH--HHHHHHHHHHhcccccCHHHHHHc--CCC-CCCceEeeCCCC--CcHHHHHHHHHhccCceEEEe
Confidence 4568999999999 999999999999999999985322 233 556799999999 799999999999999998865
Q ss_pred ecCCCCCCCCCCCCCCccCCCcccccccccccccccCcchhhccccccccCCCCchHHHHHHHHHHHhhcCCccHHHHHh
Q 001735 255 DSSVLAPYDFADDSSDCESDNYEETSESEVEDENDASNEEEWTSSNEARTDGSDSEADMQATAEAALKKLVPFNLEELEK 334 (1019)
Q Consensus 255 Ds~~l~~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~~ 334 (1019)
=.| |-++
T Consensus 217 vgS------------------------------------------------------------------------ElVq- 223 (406)
T COG1222 217 VGS------------------------------------------------------------------------ELVQ- 223 (406)
T ss_pred ccH------------------------------------------------------------------------HHHH-
Confidence 442 1011
Q ss_pred hhccccCCCccccccccCCCCccccccccCCCeEEEeCCCcccccccceeeeccccCCCCCCCcccccCCCCCCCCcccE
Q 001735 335 KLSGELDSSSESSKSEAAEPSDTSKRLLKKGDRVKYIGPSVRVEADNRIILGKIMTSDGPKNAYTIIPDRALSSGQRGEV 414 (1019)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdrvk~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~g~v 414 (1019)
||+|...+
T Consensus 224 ----------------------------------KYiGEGaR-------------------------------------- 231 (406)
T COG1222 224 ----------------------------------KYIGEGAR-------------------------------------- 231 (406)
T ss_pred ----------------------------------HHhccchH--------------------------------------
Confidence 45443332
Q ss_pred EeecCCcceeeeccccCCCCCCCCCCcccCCCCCCCcccccccccccccccchhhhhhHHHHHHHHHhhcCCeEEEEcCc
Q 001735 415 YEVNGDRAAVILDISADNKGEGEKDDKVAEQPARPPVYWIDVKHIEHDLDTQAEDCYIAMEALCEVLHSTQPLIVYFPDS 494 (1019)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~e~~~~~~p~Iiff~ei 494 (1019)
+|..||+.|+...|+|||||||
T Consensus 232 ----------------------------------------------------------lVRelF~lArekaPsIIFiDEI 253 (406)
T COG1222 232 ----------------------------------------------------------LVRELFELAREKAPSIIFIDEI 253 (406)
T ss_pred ----------------------------------------------------------HHHHHHHHHhhcCCeEEEEech
Confidence 8999999999999999999999
Q ss_pred hhhhhcc--cCCccHHHHHHHHHHHHhcCC-----CCEEEEecccCCCCCccccccccccccccccccCCCCchhhhhcc
Q 001735 495 SLWLSRA--VPRCNRKEFVRKVEEMFDQLS-----GPVVLICGQNKNETGPKEKEKFTMILPNFGRLAKLPLPLQRLTEG 567 (1019)
Q Consensus 495 d~~~~~~--~~~~~~~~~~s~~~~~l~~l~-----g~v~vI~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~LvIG 567 (1019)
|-+.... ...+--.++--++.++|..|| |+|=| |.
T Consensus 254 DAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKV--------------------------------------I~ 295 (406)
T COG1222 254 DAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKV--------------------------------------IM 295 (406)
T ss_pred hhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEE--------------------------------------EE
Confidence 9983221 111222455556666777776 44444 47
Q ss_pred cccCCCcchHHHHh--cccceEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhccCCccccccccccchhh
Q 001735 568 LKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLEDHELSCTDLLHVNTDGVIL 645 (1019)
Q Consensus 568 mTNR~d~iDeaL~r--rFe~~~eI~LPdee~Rl~Il~Iht~k~~~~~~~~~~v~~l~~~l~t~~~~gaDL~~Lct~~~~~ 645 (1019)
+|||+|.+||||+| |||+.|||||||++||.+||+||+.+|.- ..+.|++.|+. .+.|++||||+++||+|-++
T Consensus 296 ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l--~~dvd~e~la~--~~~g~sGAdlkaictEAGm~ 371 (406)
T COG1222 296 ATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNL--ADDVDLELLAR--LTEGFSGADLKAICTEAGMF 371 (406)
T ss_pred ecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccC--ccCcCHHHHHH--hcCCCchHHHHHHHHHHhHH
Confidence 88899999999999 99999999999999999999999877752 23456667766 88899999999999998877
Q ss_pred hHHhhhhHHhhhcccccccCCCCCccCCceeecHHHHHHHHHHhhhh
Q 001735 646 TKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQ 692 (1019)
Q Consensus 646 s~~~~~~~V~~A~s~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~ 692 (1019)
+.. ..+..|+++||+.|+.++...
T Consensus 372 AiR-----------------------~~R~~Vt~~DF~~Av~KV~~~ 395 (406)
T COG1222 372 AIR-----------------------ERRDEVTMEDFLKAVEKVVKK 395 (406)
T ss_pred HHH-----------------------hccCeecHHHHHHHHHHHHhc
Confidence 722 446679999999999998753
No 36
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.97 E-value=2.4e-29 Score=304.93 Aligned_cols=250 Identities=34% Similarity=0.562 Sum_probs=219.8
Q ss_pred CCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 001735 723 GEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT 802 (1019)
Q Consensus 723 ~e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~ 802 (1019)
.....+|+|+.|.+..++.+.+.+.+ +..+..|...+ ...+++|||+||||||||++|+++|.+++.+|+.++++++.
T Consensus 145 ~~~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~-~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~ 222 (644)
T PRK10733 145 DQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLG-GKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV 222 (644)
T ss_pred hhhhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcC-CCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhH
Confidence 34567899999999999999998877 56666666555 45668999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCC--chhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCC
Q 001735 803 SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGA--FEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP 880 (1019)
Q Consensus 803 s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~--~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p 880 (1019)
..+.+.....++.+|..|+..+|+||||||||.+...+... ..+....+++++|+..++++.. +..++||+|||+|
T Consensus 223 ~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~--~~~vivIaaTN~p 300 (644)
T PRK10733 223 EMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG--NEGIIVIAATNRP 300 (644)
T ss_pred HhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccC--CCCeeEEEecCCh
Confidence 88999989999999999999999999999999998776542 2344556789999999999854 4579999999999
Q ss_pred CCCcHHHHh--hCCCCcccCCCCHHHHHHHHHHHHhccCCCCccCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 001735 881 FDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEE 958 (1019)
Q Consensus 881 ~~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeG~SgaDL~~L~~~Aa~~Airr~l~~~ 958 (1019)
+.||++++| ||++.+.|++|+.++|.+||+.++....+..++++..+|..|.||||+||.++|++|+..|+++.
T Consensus 301 ~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~---- 376 (644)
T PRK10733 301 DVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN---- 376 (644)
T ss_pred hhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcC----
Confidence 999999998 99999999999999999999999999888889999999999999999999999999999887641
Q ss_pred HhcCCCCCCCCccCCCHHHHHHHHHhhCCCccc
Q 001735 959 RKRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAY 991 (1019)
Q Consensus 959 ~~~~~~~~~~~~~pLT~eDF~~Al~kv~PS~s~ 991 (1019)
...|+++||.+|+..+.+....
T Consensus 377 -----------~~~i~~~d~~~a~~~v~~g~~~ 398 (644)
T PRK10733 377 -----------KRVVSMVEFEKAKDKIMMGAER 398 (644)
T ss_pred -----------CCcccHHHHHHHHHHHhccccc
Confidence 1469999999999988776543
No 37
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.7e-29 Score=307.98 Aligned_cols=265 Identities=36% Similarity=0.589 Sum_probs=226.0
Q ss_pred CCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEec
Q 001735 724 EIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA-----GANFISITG 798 (1019)
Q Consensus 724 e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~el-----g~~fi~Is~ 798 (1019)
+..+.|++|||++.++..|++.|..|+.+|+.|.+.+ ++||+|||+|||||||||..|+|+|..+ .+.|+.-..
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~-itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkg 337 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFN-ITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKG 337 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcc-cCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcC
Confidence 3468999999999999999999999999999999988 7899999999999999999999999988 467788889
Q ss_pred cccchhhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecC
Q 001735 799 STLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATN 878 (1019)
Q Consensus 799 seL~s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN 878 (1019)
++..++|+|+.+..++.+|+.|++.+|+|||+||||-|.+.|...+ ......++.+||.+|+|+.+ ...|+||||||
T Consensus 338 aD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskq-Eqih~SIvSTLLaLmdGlds--RgqVvvigATn 414 (1080)
T KOG0732|consen 338 ADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQ-EQIHASIVSTLLALMDGLDS--RGQVVVIGATN 414 (1080)
T ss_pred chhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchH-HHhhhhHHHHHHHhccCCCC--CCceEEEcccC
Confidence 9999999999999999999999999999999999999998875542 34456788999999999965 45799999999
Q ss_pred CCCCCcHHHHh--hCCCCcccCCCCHHHHHHHHHHHHhccCCC-CccCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Q 001735 879 RPFDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELL 955 (1019)
Q Consensus 879 ~p~~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeG~SgaDL~~L~~~Aa~~Airr~l 955 (1019)
+|+.+|++++| ||++.+++++|+.+.|.+|+..+..+..-. ...-+..||+.|.||-|+||+.+|.+|++.++++..
T Consensus 415 Rpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~ 494 (1080)
T KOG0732|consen 415 RPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSF 494 (1080)
T ss_pred CccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhcccc
Confidence 99999999999 999999999999999999999998876532 233468899999999999999999999999998743
Q ss_pred HHHHh-cCCCCCCCCccCCCHHHHHHHHHhhCCCcccc
Q 001735 956 EEERK-RGKNDAAPVLRPLKLEDFIQSKAKVGPSVAYD 992 (1019)
Q Consensus 956 ~~~~~-~~~~~~~~~~~pLT~eDF~~Al~kv~PS~s~~ 992 (1019)
-..-. ............+..+||..|+.++.|+....
T Consensus 495 Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~ 532 (1080)
T KOG0732|consen 495 PQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRRS 532 (1080)
T ss_pred CeeecccccccccchhhhhhhHhhhhhhhccCCCCCcc
Confidence 21110 00111122234489999999999999887653
No 38
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.4e-28 Score=271.85 Aligned_cols=277 Identities=18% Similarity=0.221 Sum_probs=213.2
Q ss_pred HHHHHHHhhcccCCCcccccccccccccchhhHHHHHHhhhhcccCcccccccccccCCCCCceeeccCCChhHHHHHHH
Q 001735 161 ERFKNEFSRRIVPWEKINISWDTFPYYINENTKSLLVECVGSHLKHKKFTATFGARLTSSSGRILLRSVPGTELYRERLI 240 (1019)
Q Consensus 161 ~~~~~~~~~~v~~~~~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~~l~~~s~rILL~~~pgsE~Yqe~L~ 240 (1019)
..||.-+...||.|.+|.|+|++.... |.+|+.|-+.+...|+++++++ ..+|...+..|||+|||| ..+.|||
T Consensus 71 ne~E~~i~s~~v~p~~I~v~f~DIggL--e~v~~~L~e~VilPlr~pelF~--~g~Ll~p~kGiLL~GPpG--~GKTmlA 144 (386)
T KOG0737|consen 71 NEYEKRIASDVVPPSEIGVSFDDIGGL--EEVKDALQELVILPLRRPELFA--KGKLLRPPKGILLYGPPG--TGKTMLA 144 (386)
T ss_pred hHHHHHhhhcccchhhceeehhhccch--HHHHHHHHHHHhhcccchhhhc--ccccccCCccceecCCCC--chHHHHH
Confidence 448888999999999999999999999 9999999999999999999974 458999999999999999 8999999
Q ss_pred HHHHhhcCCcEEEeecCCCCCCCCCCCCCCccCCCcccccccccccccccCcchhhccccccccCCCCchHHHHHHHHHH
Q 001735 241 RALARELQVPLLVLDSSVLAPYDFADDSSDCESDNYEETSESEVEDENDASNEEEWTSSNEARTDGSDSEADMQATAEAA 320 (1019)
Q Consensus 241 kALA~~~~a~LL~lDs~~l~~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 320 (1019)
||+|++.||.+..|+.+.|+..|||+.
T Consensus 145 KA~Akeaga~fInv~~s~lt~KWfgE~----------------------------------------------------- 171 (386)
T KOG0737|consen 145 KAIAKEAGANFINVSVSNLTSKWFGEA----------------------------------------------------- 171 (386)
T ss_pred HHHHHHcCCCcceeeccccchhhHHHH-----------------------------------------------------
Confidence 999999999999999986665433111
Q ss_pred HhhcCCccHHHHHhhhccccCCCccccccccCCCCccccccccCCCeEEEeCCCcccccccceeeeccccCCCCCCCccc
Q 001735 321 LKKLVPFNLEELEKKLSGELDSSSESSKSEAAEPSDTSKRLLKKGDRVKYIGPSVRVEADNRIILGKIMTSDGPKNAYTI 400 (1019)
Q Consensus 321 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdrvk~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (1019)
.
T Consensus 172 ------------------------------------------------------e------------------------- 172 (386)
T KOG0737|consen 172 ------------------------------------------------------Q------------------------- 172 (386)
T ss_pred ------------------------------------------------------H-------------------------
Confidence 0
Q ss_pred ccCCCCCCCCcccEEeecCCcceeeeccccCCCCCCCCCCcccCCCCCCCcccccccccccccccchhhhhhHHHHHHHH
Q 001735 401 IPDRALSSGQRGEVYEVNGDRAAVILDISADNKGEGEKDDKVAEQPARPPVYWIDVKHIEHDLDTQAEDCYIAMEALCEV 480 (1019)
Q Consensus 401 ~~~r~~~~g~~g~v~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~e~ 480 (1019)
-++.++|-.
T Consensus 173 -----------------------------------------------------------------------Klv~AvFsl 181 (386)
T KOG0737|consen 173 -----------------------------------------------------------------------KLVKAVFSL 181 (386)
T ss_pred -----------------------------------------------------------------------HHHHHHHhh
Confidence 166788888
Q ss_pred HhhcCCeEEEEcCchhhhhcccCCccHHHH---HHHHHHHHhcCC----CCEEEEecccCCCCCcccccccccccccccc
Q 001735 481 LHSTQPLIVYFPDSSLWLSRAVPRCNRKEF---VRKVEEMFDQLS----GPVVLICGQNKNETGPKEKEKFTMILPNFGR 553 (1019)
Q Consensus 481 ~~~~~p~Iiff~eid~~~~~~~~~~~~~~~---~s~~~~~l~~l~----g~v~vI~~~~~~d~~~~~~~~~~~~~~~~~~ 553 (1019)
|.+.||+|||+||||..++.. +.+.|+-. -..|-.+-|++. -+|+|
T Consensus 182 AsKl~P~iIFIDEvds~L~~R-~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlV-------------------------- 234 (386)
T KOG0737|consen 182 ASKLQPSIIFIDEVDSFLGQR-RSTDHEATAMMKNEFMALWDGLSSKDSERVLV-------------------------- 234 (386)
T ss_pred hhhcCcceeehhhHHHHHhhc-ccchHHHHHHHHHHHHHHhccccCCCCceEEE--------------------------
Confidence 889999999999999998776 77777654 233334445553 23444
Q ss_pred ccCCCCchhhhhcccccCCCcchHHHHhcccceEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhccCCcc
Q 001735 554 LAKLPLPLQRLTEGLKATKRSDDNEIYNLFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLEDHELSCT 633 (1019)
Q Consensus 554 ~~~~~~~~~~LvIGmTNR~d~iDeaL~rrFe~~~eI~LPdee~Rl~Il~Iht~k~~~~~~~~~~v~~l~~~l~t~~~~ga 633 (1019)
.|+||||-.+|+|++|||+..|+|++|+.++|.+||+.-+++ +....+-|+++++. .|+||+|.
T Consensus 235 ------------lgATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~--e~~e~~vD~~~iA~--~t~GySGS 298 (386)
T KOG0737|consen 235 ------------LGATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKK--EKLEDDVDLDEIAQ--MTEGYSGS 298 (386)
T ss_pred ------------EeCCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcc--cccCcccCHHHHHH--hcCCCcHH
Confidence 588999999999999999999999999999999999988643 33335556667766 89999999
Q ss_pred ccccccccchhhhHHhhhhHHhhh-----cccccccCCCCC---ccCCceeecHHHHHHHHHHhhhh
Q 001735 634 DLLHVNTDGVILTKQRAEKVVGWA-----KNHYLSSCSFPS---VKGQRLHLPRESLEIAILRLKEQ 692 (1019)
Q Consensus 634 DL~~Lct~~~~~s~~~~~~~V~~A-----~s~~l~~~~~~~---v~~~kv~V~~~df~~Al~~l~p~ 692 (1019)
||..||..+++....++ +..- ...+.......+ .+-...-+.++||..|+..+-++
T Consensus 299 DLkelC~~Aa~~~ire~---~~~~~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~ 362 (386)
T KOG0737|consen 299 DLKELCRLAALRPIREL---LVSETGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSAS 362 (386)
T ss_pred HHHHHHHHHhHhHHHHH---HHhcccchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhH
Confidence 99999999988764432 2221 011111000000 11113457788999888877665
No 39
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.96 E-value=2.9e-28 Score=306.81 Aligned_cols=210 Identities=20% Similarity=0.223 Sum_probs=172.5
Q ss_pred ccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhh-------------------------------
Q 001735 757 SRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKW------------------------------- 805 (1019)
Q Consensus 757 ~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s~~------------------------------- 805 (1019)
.+.| ..|++||||+||||||||+||+|+|.++++||+.|++++++..+
T Consensus 1623 lrLG-l~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~ 1701 (2281)
T CHL00206 1623 LRLA-LSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTEL 1701 (2281)
T ss_pred HHcC-CCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhh
Confidence 3445 57899999999999999999999999999999999999988543
Q ss_pred ----------hhhHH--HHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccc-cCCCcEE
Q 001735 806 ----------FGDAE--KLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRS-KESQKIL 872 (1019)
Q Consensus 806 ----------~Ge~e--~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~-~~~~~VL 872 (1019)
.+..+ ..++.+|+.|++.+||||||||||.+..... ....+++|+..|++... .....|+
T Consensus 1702 ~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds-------~~ltL~qLLneLDg~~~~~s~~~VI 1774 (2281)
T CHL00206 1702 LTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES-------NYLSLGLLVNSLSRDCERCSTRNIL 1774 (2281)
T ss_pred hhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc-------ceehHHHHHHHhccccccCCCCCEE
Confidence 11222 3488999999999999999999999975421 12247888899987642 2346799
Q ss_pred EEEecCCCCCCcHHHHh--hCCCCcccCCCCHHHHHHHHHHHHh--ccCCCC-ccCHHHHHHHhcCCCHHHHHHHHHHHH
Q 001735 873 ILGATNRPFDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLA--HESLES-GFQFNELANATEGYSGSDLKNLCIAAA 947 (1019)
Q Consensus 873 VIaTTN~p~~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~--~~~l~~-dvdl~~LA~~TeG~SgaDL~~L~~~Aa 947 (1019)
||||||+|+.||||++| ||++.|.|+.|+..+|.+++..++. +..+.. .+++..+|..|.||+|+||.+||++|+
T Consensus 1775 VIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAa 1854 (2281)
T CHL00206 1775 VIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEAL 1854 (2281)
T ss_pred EEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 99999999999999999 9999999999999999999886543 334433 368999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHHhhCCCc
Q 001735 948 YRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQSKAKVGPSV 989 (1019)
Q Consensus 948 ~~Airr~l~~~~~~~~~~~~~~~~pLT~eDF~~Al~kv~PS~ 989 (1019)
+.|+++. ...|+++||..|+.++..-.
T Consensus 1855 liAirq~---------------ks~Id~~~I~~Al~Rq~~g~ 1881 (2281)
T CHL00206 1855 SISITQK---------------KSIIDTNTIRSALHRQTWDL 1881 (2281)
T ss_pred HHHHHcC---------------CCccCHHHHHHHHHHHHhhh
Confidence 9998762 14589999999998876443
No 40
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6.5e-29 Score=281.19 Aligned_cols=265 Identities=28% Similarity=0.464 Sum_probs=220.4
Q ss_pred Cccccc--ccChHHHHH-HHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-cEEEEecccc
Q 001735 726 GVRFDD--IGALEDVKK-ALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA-NFISITGSTL 801 (1019)
Q Consensus 726 ~vtfdD--IgGle~vk~-~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~-~fi~Is~seL 801 (1019)
.-.|++ |||++.--. ..++......--|+...+.| ....+|+|||||||||||.+|+.|...+++ +---|+++++
T Consensus 215 df~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lG-i~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeI 293 (744)
T KOG0741|consen 215 DFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLG-IKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEI 293 (744)
T ss_pred CCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcC-ccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHH
Confidence 355665 688886654 45566666667788888888 567799999999999999999999999976 3455799999
Q ss_pred chhhhhhHHHHHHHHHHHHHhc--------CCeEEEeccchhhhhccCCCch-hHHHHHHHHHHHhhhccccccCCCcEE
Q 001735 802 TSKWFGDAEKLTKALFSFASKL--------APVIIFVDEVDSLLGARGGAFE-HEATRRMRNEFMSAWDGLRSKESQKIL 872 (1019)
Q Consensus 802 ~s~~~Ge~e~~I~~lF~~Ark~--------~PsIIfIDEID~L~~~r~~~~~-~e~~~ril~~LL~~Ldgl~~~~~~~VL 872 (1019)
+++|+|++|.+++++|.+|... ...||++||||+++..|++... ..+...++|+||..+||...- .+|+
T Consensus 294 L~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqL--NNIL 371 (744)
T KOG0741|consen 294 LNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQL--NNIL 371 (744)
T ss_pred HHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhh--hcEE
Confidence 9999999999999999998542 3469999999999998876544 567789999999999998654 4799
Q ss_pred EEEecCCCCCCcHHHHh--hCCCCcccCCCCHHHHHHHHHHHHhc----cCCCCccCHHHHHHHhcCCCHHHHHHHHHHH
Q 001735 873 ILGATNRPFDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAH----ESLESGFQFNELANATEGYSGSDLKNLCIAA 946 (1019)
Q Consensus 873 VIaTTN~p~~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~----~~l~~dvdl~~LA~~TeG~SgaDL~~L~~~A 946 (1019)
|||-||+.+.+|+||+| ||...+++.+||+..|.+|++.|... ..+..++|+++||..|..|||++|..|+..|
T Consensus 372 VIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA 451 (744)
T KOG0741|consen 372 VIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSA 451 (744)
T ss_pred EEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHH
Confidence 99999999999999999 99999999999999999999998874 3456899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHHhhCCCcccch
Q 001735 947 AYRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAYDA 993 (1019)
Q Consensus 947 a~~Airr~l~~~~~~~~~~~~~~~~pLT~eDF~~Al~kv~PS~s~~~ 993 (1019)
.-.|+.|.+....+...+........||++||..|+.+++|.+-...
T Consensus 452 ~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~se 498 (744)
T KOG0741|consen 452 QSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAFGISE 498 (744)
T ss_pred HHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcccCCCH
Confidence 99999987765422222222233357999999999999999986443
No 41
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.94 E-value=1.2e-26 Score=258.94 Aligned_cols=220 Identities=17% Similarity=0.244 Sum_probs=171.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhhhhHHHHHHHHHHHHHhc-----CCeEEEeccchhh
Q 001735 762 LRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKL-----APVIIFVDEVDSL 836 (1019)
Q Consensus 762 ~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark~-----~PsIIfIDEID~L 836 (1019)
+++|.+++||||||||||++|++||+++|++|+.+++++|.++|.|++++.++++|..|+.. +||||||||||.+
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~ 224 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAG 224 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhc
Confidence 68899999999999999999999999999999999999999999999999999999999754 6999999999999
Q ss_pred hhccCCCchhHHHHHHH-HHHHhhhcccc----------ccCCCcEEEEEecCCCCCCcHHHHh--hCCCCcccCCCCHH
Q 001735 837 LGARGGAFEHEATRRMR-NEFMSAWDGLR----------SKESQKILILGATNRPFDLDDAVIR--RLPRRIYVDLPDAE 903 (1019)
Q Consensus 837 ~~~r~~~~~~e~~~ril-~~LL~~Ldgl~----------~~~~~~VLVIaTTN~p~~LD~aLlr--RFd~~I~V~lPd~e 903 (1019)
++.+... .....++++ .+||+++|+.. .....+|+||+|||+|+.||++|+| ||++.+ ..|+.+
T Consensus 225 ~g~r~~~-~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e 301 (413)
T PLN00020 225 AGRFGTT-QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTRE 301 (413)
T ss_pred CCCCCCC-CcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHH
Confidence 9988643 344445554 79999988641 1235679999999999999999999 999865 579999
Q ss_pred HHHHHHHHHHhccCCCCccCHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHHHHHH-H--HhcCCCCCCC--CccCCC
Q 001735 904 NRMKILRIFLAHESLESGFQFNELANATEG----YSGSDLKNLCIAAAYRPVQELLEE-E--RKRGKNDAAP--VLRPLK 974 (1019)
Q Consensus 904 eR~eILk~~L~~~~l~~dvdl~~LA~~TeG----~SgaDL~~L~~~Aa~~Airr~l~~-~--~~~~~~~~~~--~~~pLT 974 (1019)
+|.+||+.+++...+. ..++..|+..+.| |.|+--..+..++....+.++--+ . +..+.....+ ....+|
T Consensus 302 ~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i~~~g~~~~~~~l~~~~~~~p~f~~~~~t 380 (413)
T PLN00020 302 DRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWIAEVGVENLGKKLVNSKKGPPTFEPPKMT 380 (413)
T ss_pred HHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCCCCCCCCC
Confidence 9999999999987765 5778888887766 566666677777766666654111 0 0011111112 123478
Q ss_pred HHHHHHHHHhh
Q 001735 975 LEDFIQSKAKV 985 (1019)
Q Consensus 975 ~eDF~~Al~kv 985 (1019)
.+.+.++=..+
T Consensus 381 ~~~l~~~g~~l 391 (413)
T PLN00020 381 LEKLLEYGNML 391 (413)
T ss_pred HHHHHHHHHHH
Confidence 88887665544
No 42
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.5e-24 Score=236.96 Aligned_cols=268 Identities=17% Similarity=0.232 Sum_probs=201.2
Q ss_pred HHHHHhhcccCCCcccccccccccccchhhHHHHHHhhhhcccCcccccccccccCCCCCceeeccCCChhHHHHHHHHH
Q 001735 163 FKNEFSRRIVPWEKINISWDTFPYYINENTKSLLVECVGSHLKHKKFTATFGARLTSSSGRILLRSVPGTELYRERLIRA 242 (1019)
Q Consensus 163 ~~~~~~~~v~~~~~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~~l~~~s~rILL~~~pgsE~Yqe~L~kA 242 (1019)
+-+.|.|-|+. ++.+|.||++-.. +..|.+|-+|+..++.-++|+ ..+-..=+.+||.|||| ....|||||
T Consensus 194 Lve~lerdIl~-~np~ikW~DIagl--~~AK~lL~EAVvlPi~mPe~F----~GirrPWkgvLm~GPPG--TGKTlLAKA 264 (491)
T KOG0738|consen 194 LVEALERDILQ-RNPNIKWDDIAGL--HEAKKLLKEAVVLPIWMPEFF----KGIRRPWKGVLMVGPPG--TGKTLLAKA 264 (491)
T ss_pred HHHHHHHHHhc-cCCCcChHhhcch--HHHHHHHHHHHhhhhhhHHHH----hhcccccceeeeeCCCC--CcHHHHHHH
Confidence 44445555554 5677999999999 999999999999999988764 67888999999999999 799999999
Q ss_pred HHhhcCCcEEEeecCCCCCCCCCCCCCCccCCCcccccccccccccccCcchhhccccccccCCCCchHHHHHHHHHHHh
Q 001735 243 LARELQVPLLVLDSSVLAPYDFADDSSDCESDNYEETSESEVEDENDASNEEEWTSSNEARTDGSDSEADMQATAEAALK 322 (1019)
Q Consensus 243 LA~~~~a~LL~lDs~~l~~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 322 (1019)
+|-+.|.-+..+-|++|..
T Consensus 265 vATEc~tTFFNVSsstltS------------------------------------------------------------- 283 (491)
T KOG0738|consen 265 VATECGTTFFNVSSSTLTS------------------------------------------------------------- 283 (491)
T ss_pred HHHhhcCeEEEechhhhhh-------------------------------------------------------------
Confidence 9999998888877753332
Q ss_pred hcCCccHHHHHhhhccccCCCccccccccCCCCccccccccCCCeEEEeCCCcccccccceeeeccccCCCCCCCccccc
Q 001735 323 KLVPFNLEELEKKLSGELDSSSESSKSEAAEPSDTSKRLLKKGDRVKYIGPSVRVEADNRIILGKIMTSDGPKNAYTIIP 402 (1019)
Q Consensus 323 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdrvk~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1019)
||-|.|-
T Consensus 284 ----------------------------------------------KwRGeSE--------------------------- 290 (491)
T KOG0738|consen 284 ----------------------------------------------KWRGESE--------------------------- 290 (491)
T ss_pred ----------------------------------------------hhccchH---------------------------
Confidence 2111111
Q ss_pred CCCCCCCCcccEEeecCCcceeeeccccCCCCCCCCCCcccCCCCCCCcccccccccccccccchhhhhhHHHHHHHHHh
Q 001735 403 DRALSSGQRGEVYEVNGDRAAVILDISADNKGEGEKDDKVAEQPARPPVYWIDVKHIEHDLDTQAEDCYIAMEALCEVLH 482 (1019)
Q Consensus 403 ~r~~~~g~~g~v~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~e~~~ 482 (1019)
-+|.-|||-|+
T Consensus 291 ---------------------------------------------------------------------KlvRlLFemAR 301 (491)
T KOG0738|consen 291 ---------------------------------------------------------------------KLVRLLFEMAR 301 (491)
T ss_pred ---------------------------------------------------------------------HHHHHHHHHHH
Confidence 17889999999
Q ss_pred hcCCeEEEEcCchhhhhcccCCccHH---HHHHHHHHHHhcCCCC------EEEEecccCCCCCcccccccccccccccc
Q 001735 483 STQPLIVYFPDSSLWLSRAVPRCNRK---EFVRKVEEMFDQLSGP------VVLICGQNKNETGPKEKEKFTMILPNFGR 553 (1019)
Q Consensus 483 ~~~p~Iiff~eid~~~~~~~~~~~~~---~~~s~~~~~l~~l~g~------v~vI~~~~~~d~~~~~~~~~~~~~~~~~~ 553 (1019)
..-|++|||||||-|..+.-.++.|+ ++-+.|+-.||++.|. |.|+
T Consensus 302 fyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVL------------------------- 356 (491)
T KOG0738|consen 302 FYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVL------------------------- 356 (491)
T ss_pred HhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEE-------------------------
Confidence 99999999999999987766777776 4678888888888632 3444
Q ss_pred ccCCCCchhhhhcccccCCCcchHHHHhcccceEEEcCCChHHHHHHHHHHHHHHhhhhh-hhhhHHHHHHHHhhccCCc
Q 001735 554 LAKLPLPLQRLTEGLKATKRSDDNEIYNLFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVI-YRSNLNELHKVLEDHELSC 632 (1019)
Q Consensus 554 ~~~~~~~~~~LvIGmTNR~d~iDeaL~rrFe~~~eI~LPdee~Rl~Il~Iht~k~~~~~~-~~~~v~~l~~~l~t~~~~g 632 (1019)
.+||=|-.|||||+||||..|||||||.++|...++|.+.. ... ...+++.|++ ++.||+|
T Consensus 357 -------------AATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~---~~~~~~~~~~~lae--~~eGySG 418 (491)
T KOG0738|consen 357 -------------AATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRS---VELDDPVNLEDLAE--RSEGYSG 418 (491)
T ss_pred -------------eccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhcc---ccCCCCccHHHHHH--HhcCCCh
Confidence 45566667999999999999999999999999999998533 222 2234555665 8889999
Q ss_pred cccccccccchhhhHHhhhhHHhhhcccccccCCCC-CccCCceeecHHHHHHHHHHhhhh
Q 001735 633 TDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFP-SVKGQRLHLPRESLEIAILRLKEQ 692 (1019)
Q Consensus 633 aDL~~Lct~~~~~s~~~~~~~V~~A~s~~l~~~~~~-~v~~~kv~V~~~df~~Al~~l~p~ 692 (1019)
+||..+|.++.+..-.+ -+.......+.. ..+.-+.-|+.+||+.|+.++.|+
T Consensus 419 aDI~nvCreAsm~~mRR-------~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pS 472 (491)
T KOG0738|consen 419 ADITNVCREASMMAMRR-------KIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPS 472 (491)
T ss_pred HHHHHHHHHHHHHHHHH-------HHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcC
Confidence 99999999988776432 111111111110 001112448889999999999986
No 43
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=3.7e-23 Score=244.44 Aligned_cols=260 Identities=18% Similarity=0.259 Sum_probs=202.5
Q ss_pred HHHHHHHhhc----ccCCCcccccccccccccchhhHHHHHHhhhhcccCcccccccccccCCCCCceeeccCCChhHHH
Q 001735 161 ERFKNEFSRR----IVPWEKINISWDTFPYYINENTKSLLVECVGSHLKHKKFTATFGARLTSSSGRILLRSVPGTELYR 236 (1019)
Q Consensus 161 ~~~~~~~~~~----v~~~~~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~~l~~~s~rILL~~~pgsE~Yq 236 (1019)
+.+++.+.+- .+.-.+-.|+|++...+ +..|..|.+++-..+++++.+ ..-.-.....|||+|||| ..+
T Consensus 217 ~~~~~~l~~~~~~~~~~~~~~~v~~~diggl--~~~k~~l~e~v~~~~~~~e~~---~~~~~~~~~giLl~GpPG--tGK 289 (494)
T COG0464 217 DDFEEALKKVLPSRGVLFEDEDVTLDDIGGL--EEAKEELKEAIETPLKRPELF---RKLGLRPPKGVLLYGPPG--TGK 289 (494)
T ss_pred HHHHHHHHhcCcccccccCCCCcceehhhcH--HHHHHHHHHHHHhHhhChHHH---HhcCCCCCCeeEEECCCC--CCH
Confidence 4455555442 44467778999999998 999999999999999999973 332334444999999999 899
Q ss_pred HHHHHHHHhhcCCcEEEeecCCCCCCCCCCCCCCccCCCcccccccccccccccCcchhhccccccccCCCCchHHHHHH
Q 001735 237 ERLIRALARELQVPLLVLDSSVLAPYDFADDSSDCESDNYEETSESEVEDENDASNEEEWTSSNEARTDGSDSEADMQAT 316 (1019)
Q Consensus 237 e~L~kALA~~~~a~LL~lDs~~l~~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 316 (1019)
.+||||+|++.+++++-++.+.|.+
T Consensus 290 T~lAkava~~~~~~fi~v~~~~l~s------------------------------------------------------- 314 (494)
T COG0464 290 TLLAKAVALESRSRFISVKGSELLS------------------------------------------------------- 314 (494)
T ss_pred HHHHHHHHhhCCCeEEEeeCHHHhc-------------------------------------------------------
Confidence 9999999999999999999852222
Q ss_pred HHHHHhhcCCccHHHHHhhhccccCCCccccccccCCCCccccccccCCCeEEEeCCCcccccccceeeeccccCCCCCC
Q 001735 317 AEAALKKLVPFNLEELEKKLSGELDSSSESSKSEAAEPSDTSKRLLKKGDRVKYIGPSVRVEADNRIILGKIMTSDGPKN 396 (1019)
Q Consensus 317 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdrvk~~g~~~~~~~~~~~~~~~~~~~~~~~~ 396 (1019)
||+|.+.
T Consensus 315 ----------------------------------------------------k~vGese--------------------- 321 (494)
T COG0464 315 ----------------------------------------------------KWVGESE--------------------- 321 (494)
T ss_pred ----------------------------------------------------cccchHH---------------------
Confidence 3333222
Q ss_pred CcccccCCCCCCCCcccEEeecCCcceeeeccccCCCCCCCCCCcccCCCCCCCcccccccccccccccchhhhhhHHHH
Q 001735 397 AYTIIPDRALSSGQRGEVYEVNGDRAAVILDISADNKGEGEKDDKVAEQPARPPVYWIDVKHIEHDLDTQAEDCYIAMEA 476 (1019)
Q Consensus 397 ~~~~~~~r~~~~g~~g~v~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 476 (1019)
-.|..
T Consensus 322 ---------------------------------------------------------------------------k~ir~ 326 (494)
T COG0464 322 ---------------------------------------------------------------------------KNIRE 326 (494)
T ss_pred ---------------------------------------------------------------------------HHHHH
Confidence 17889
Q ss_pred HHHHHhhcCCeEEEEcCchhhhhcccCCcc--HHHHHHHHHHHHhcCC--CCEEEEecccCCCCCccccccccccccccc
Q 001735 477 LCEVLHSTQPLIVYFPDSSLWLSRAVPRCN--RKEFVRKVEEMFDQLS--GPVVLICGQNKNETGPKEKEKFTMILPNFG 552 (1019)
Q Consensus 477 L~e~~~~~~p~Iiff~eid~~~~~~~~~~~--~~~~~s~~~~~l~~l~--g~v~vI~~~~~~d~~~~~~~~~~~~~~~~~ 552 (1019)
+|+.|++.+|+||||||+|.|+........ ..++++.|++.|+++. ..|+||
T Consensus 327 ~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi------------------------ 382 (494)
T COG0464 327 LFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVI------------------------ 382 (494)
T ss_pred HHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEE------------------------
Confidence 999999999999999999999744322211 1488999999998886 445555
Q ss_pred cccCCCCchhhhhcccccCCCcchHHHHh--cccceEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhccC
Q 001735 553 RLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLEDHEL 630 (1019)
Q Consensus 553 ~~~~~~~~~~~LvIGmTNR~d~iDeaL~r--rFe~~~eI~LPdee~Rl~Il~Iht~k~~~~~~~~~~v~~l~~~l~t~~~ 630 (1019)
|+||||+.||+|++| ||+..|+|++||.++|++||++|+.........+.+++.+++ .|.||
T Consensus 383 --------------~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~--~t~~~ 446 (494)
T COG0464 383 --------------AATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAE--ITEGY 446 (494)
T ss_pred --------------ecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHH--HhcCC
Confidence 888999999999999 999999999999999999999997654444344566777776 78889
Q ss_pred CccccccccccchhhhHHhhhhHHhhhcccccccCCCCCccCCceeecHHHHHHHHHHhhhh
Q 001735 631 SCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQ 692 (1019)
Q Consensus 631 ~gaDL~~Lct~~~~~s~~~~~~~V~~A~s~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~ 692 (1019)
+|+||..+|.++++....+.. ...|+.+||..|+.++.|+
T Consensus 447 sgadi~~i~~ea~~~~~~~~~----------------------~~~~~~~~~~~a~~~~~p~ 486 (494)
T COG0464 447 SGADIAALVREAALEALREAR----------------------RREVTLDDFLDALKKIKPS 486 (494)
T ss_pred CHHHHHHHHHHHHHHHHHHhc----------------------cCCccHHHHHHHHHhcCCC
Confidence 999999999887766633321 3357899999999987775
No 44
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.90 E-value=2.1e-21 Score=239.37 Aligned_cols=389 Identities=15% Similarity=0.217 Sum_probs=238.8
Q ss_pred HHHHHHHHHhhcCCeEEEEcCchhhhhcccCCccHHHHHHHHHHHHhcCCCCEEEEecccCCCCCccccccccccccccc
Q 001735 473 AMEALCEVLHSTQPLIVYFPDSSLWLSRAVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPNFG 552 (1019)
Q Consensus 473 ~i~~L~e~~~~~~p~Iiff~eid~~~~~~~~~~~~~~~~s~~~~~l~~l~g~v~vI~~~~~~d~~~~~~~~~~~~~~~~~ 552 (1019)
-+..+|+++.+.+|.|||||||+.|+.......-.....+.|...|+ .|.+++||+||..+-
T Consensus 262 ~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~--~g~i~~IgaTt~~e~---------------- 323 (731)
T TIGR02639 262 RLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS--SGKLRCIGSTTYEEY---------------- 323 (731)
T ss_pred HHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh--CCCeEEEEecCHHHH----------------
Confidence 67888999988899999999999997432111111133455555554 699999988876430
Q ss_pred cccCCCCchhhhhcccccCCCcchHHHHhcccceEEEcCCChHHHHHHHHHHHHHHh---hhhhhhhhHHHHHHHHhhcc
Q 001735 553 RLAKLPLPLQRLTEGLKATKRSDDNEIYNLFTNVLSIHPPKEEDLLRTFNKQVEEDR---RIVIYRSNLNELHKVLEDHE 629 (1019)
Q Consensus 553 ~~~~~~~~~~~LvIGmTNR~d~iDeaL~rrFe~~~eI~LPdee~Rl~Il~Iht~k~~---~~~~~~~~v~~l~~~l~t~~ 629 (1019)
|..-.+|+||.|||. .++|+.|+.+.+.+||+.+..+.. .....+.-++.+.. .+..
T Consensus 324 -----------------~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~--ls~r 383 (731)
T TIGR02639 324 -----------------KNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVE--LSAR 383 (731)
T ss_pred -----------------HHHhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHH--hhhc
Confidence 111347999999997 799999999999999997754321 11233333444443 2233
Q ss_pred CCccccccccccchhhhHHhhhhHHhhhcccccccCCCCCccCCceeecHHHHHHHHHHhhhhhhccCCCcccccccchh
Q 001735 630 LSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQETASRKPTQNLKNLAKD 709 (1019)
Q Consensus 630 ~~gaDL~~Lct~~~~~s~~~~~~~V~~A~s~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~~~~~~~~~~~l~~~~~~ 709 (1019)
|-+.. .+-..+. .++..|-...-.. + ....+..|+.+|+..++..+... ++..+..+
T Consensus 384 yi~~r--~~P~kai--------~lld~a~a~~~~~---~-~~~~~~~v~~~~i~~~i~~~tgi---------P~~~~~~~ 440 (731)
T TIGR02639 384 YINDR--FLPDKAI--------DVIDEAGASFRLR---P-KAKKKANVSVKDIENVVAKMAHI---------PVKTVSVD 440 (731)
T ss_pred ccccc--cCCHHHH--------HHHHHhhhhhhcC---c-ccccccccCHHHHHHHHHHHhCC---------ChhhhhhH
Confidence 32211 1111110 0011111100000 0 01124568899999888876421 11111111
Q ss_pred h------hhhhhcccccCCCCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCC---CCCCceEEEEcCCCChHHH
Q 001735 710 E------YESNFVSAVVPPGEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNL---LRPCKGILLFGPPGTGKTL 780 (1019)
Q Consensus 710 e------~e~~~~~~ii~~~e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl---~~p~~gVLL~GPpGTGKT~ 780 (1019)
+ +++.+. ..|.|++++++.+.+.+... +.++ .+|..++||+||+|||||+
T Consensus 441 ~~~~l~~l~~~l~-------------~~v~GQ~~ai~~l~~~i~~~--------~~g~~~~~~p~~~~lf~Gp~GvGKT~ 499 (731)
T TIGR02639 441 DREKLKNLEKNLK-------------AKIFGQDEAIDSLVSSIKRS--------RAGLGNPNKPVGSFLFTGPTGVGKTE 499 (731)
T ss_pred HHHHHHHHHHHHh-------------cceeCcHHHHHHHHHHHHHH--------hcCCCCCCCCceeEEEECCCCccHHH
Confidence 1 122211 24678999999988877542 1221 2344468999999999999
Q ss_pred HHHHHHHHhCCcEEEEeccccchh-----hhhhHH-----HHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHH
Q 001735 781 LAKALATEAGANFISITGSTLTSK-----WFGDAE-----KLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATR 850 (1019)
Q Consensus 781 LArAIA~elg~~fi~Is~seL~s~-----~~Ge~e-----~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ 850 (1019)
||+++|..++.+++.++++++... ..|... .....+....+..+.+||||||||.+- .
T Consensus 500 lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~------------~ 567 (731)
T TIGR02639 500 LAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAH------------P 567 (731)
T ss_pred HHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcC------------H
Confidence 999999999999999999876432 111110 111233444556778999999999863 2
Q ss_pred HHHHHHHhhhccccc-------cCCCcEEEEEecCCCC-------------------------CCcHHHHhhCCCCcccC
Q 001735 851 RMRNEFMSAWDGLRS-------KESQKILILGATNRPF-------------------------DLDDAVIRRLPRRIYVD 898 (1019)
Q Consensus 851 ril~~LL~~Ldgl~~-------~~~~~VLVIaTTN~p~-------------------------~LD~aLlrRFd~~I~V~ 898 (1019)
.+.+.|++.++.-.- .+-.+.+||+|||... .+.|+++.||+.++.|.
T Consensus 568 ~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~ 647 (731)
T TIGR02639 568 DIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFN 647 (731)
T ss_pred HHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcC
Confidence 345667777764321 1224678888987632 15678888999999999
Q ss_pred CCCHHHHHHHHHHHHhcc-------CCC---CccCHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHH
Q 001735 899 LPDAENRMKILRIFLAHE-------SLE---SGFQFNELANA--TEGYSGSDLKNLCIAAAYRPVQELL 955 (1019)
Q Consensus 899 lPd~eeR~eILk~~L~~~-------~l~---~dvdl~~LA~~--TeG~SgaDL~~L~~~Aa~~Airr~l 955 (1019)
+.+.++..+|++..+... ++. ++..++.|+.. ...+..+.|+.+++.....++.+.+
T Consensus 648 pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~~~ 716 (731)
T TIGR02639 648 PLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSDEI 716 (731)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHHHH
Confidence 999999999999887631 111 22224556654 3346678888888887777766544
No 45
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=7.7e-23 Score=240.42 Aligned_cols=248 Identities=21% Similarity=0.322 Sum_probs=205.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCC
Q 001735 763 RPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGG 842 (1019)
Q Consensus 763 ~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~ 842 (1019)
+....+||+|+||||||++++++|.++|.+++.++|.++.....+..+..+..+|..|+..+|+|||+-++|.+.....+
T Consensus 429 ~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg 508 (953)
T KOG0736|consen 429 TLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG 508 (953)
T ss_pred ccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC
Confidence 34467999999999999999999999999999999999999988899999999999999999999999999999865544
Q ss_pred CchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCCCcc
Q 001735 843 AFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLESGF 922 (1019)
Q Consensus 843 ~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dv 922 (1019)
+..... ...++.++. ++.. .....+++||++|+..+.+++.+++.|..+|.++.|+.++|.+||++++....+..++
T Consensus 509 ged~rl-~~~i~~~ls-~e~~-~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v 585 (953)
T KOG0736|consen 509 GEDARL-LKVIRHLLS-NEDF-KFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLNQDV 585 (953)
T ss_pred chhHHH-HHHHHHHHh-cccc-cCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccchHH
Confidence 321121 223333333 2222 2345689999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCCCCCCccCCCHHHHHHHHHhhCCCcccchhcHH
Q 001735 923 QFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERK-----RGKNDAAPVLRPLKLEDFIQSKAKVGPSVAYDAASMN 997 (1019)
Q Consensus 923 dl~~LA~~TeG~SgaDL~~L~~~Aa~~Airr~l~~~~~-----~~~~~~~~~~~pLT~eDF~~Al~kv~PS~s~~~~~m~ 997 (1019)
.++.+|..|.||+.+|+..++..+-..+..++.+..-. ............++++||.+|+.+++..++..+++.+
T Consensus 586 ~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPK 665 (953)
T KOG0736|consen 586 NLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPK 665 (953)
T ss_pred HHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhhhhhcCCCC
Confidence 99999999999999999999988855555554433210 1122233444789999999999999999999999887
Q ss_pred -HHHHHHHHhCCCCccc
Q 001735 998 -ELRKWNEQYGEGGSRR 1013 (1019)
Q Consensus 998 -~lvkW~digG~~g~rk 1013 (1019)
+.|.|+|+||++.+|+
T Consensus 666 IPnV~WdDVGGLeevK~ 682 (953)
T KOG0736|consen 666 IPNVSWDDVGGLEEVKT 682 (953)
T ss_pred CCccchhcccCHHHHHH
Confidence 8999999999998875
No 46
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.87 E-value=1.3e-21 Score=229.91 Aligned_cols=156 Identities=11% Similarity=0.181 Sum_probs=120.1
Q ss_pred HHHHHHHHHhhcCCeEEEEcCchhhhhccc---CCccHHHHHHHHHHHHhcCCCCEEEEecccCCCCCcccccccccccc
Q 001735 473 AMEALCEVLHSTQPLIVYFPDSSLWLSRAV---PRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILP 549 (1019)
Q Consensus 473 ~i~~L~e~~~~~~p~Iiff~eid~~~~~~~---~~~~~~~~~s~~~~~l~~l~g~v~vI~~~~~~d~~~~~~~~~~~~~~ 549 (1019)
.+..+|+.|+..+|+||||||||.++.+.. ......+++.+|...|+....+|+||
T Consensus 306 ~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vI--------------------- 364 (489)
T CHL00195 306 RMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVV--------------------- 364 (489)
T ss_pred HHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEE---------------------
Confidence 567889999999999999999999975321 12234566777777777666667666
Q ss_pred ccccccCCCCchhhhhcccccCCCcchHHHHh--cccceEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhh
Q 001735 550 NFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLED 627 (1019)
Q Consensus 550 ~~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~r--rFe~~~eI~LPdee~Rl~Il~Iht~k~~~~~~~~~~v~~l~~~l~t 627 (1019)
++||+++.||+||+| ||+..|+|++|+.++|.+||++|+.+.+.....+.+++.|+. .|
T Consensus 365 -----------------aTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~--~T 425 (489)
T CHL00195 365 -----------------ATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSK--LS 425 (489)
T ss_pred -----------------EecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHh--hc
Confidence 667778889999998 999999999999999999999998775544344566777777 78
Q ss_pred ccCCccccccccccchhhhHHhhhhHHhhhcccccccCCCCCccCCceeecHHHHHHHHHHhhhh
Q 001735 628 HELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQ 692 (1019)
Q Consensus 628 ~~~~gaDL~~Lct~~~~~s~~~~~~~V~~A~s~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~ 692 (1019)
.||+|+||+.+|.++...+ +. .+ -.++.+||..|+.+++|.
T Consensus 426 ~GfSGAdI~~lv~eA~~~A-----------~~------------~~-~~lt~~dl~~a~~~~~Pl 466 (489)
T CHL00195 426 NKFSGAEIEQSIIEAMYIA-----------FY------------EK-REFTTDDILLALKQFIPL 466 (489)
T ss_pred CCCCHHHHHHHHHHHHHHH-----------HH------------cC-CCcCHHHHHHHHHhcCCC
Confidence 8999999999886554322 10 00 136889999999999986
No 47
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.86 E-value=7.9e-20 Score=224.24 Aligned_cols=392 Identities=15% Similarity=0.192 Sum_probs=237.4
Q ss_pred hHHHHHHHHHhhcCCeEEEEcCchhhhhcccCCccHHHHHHHHHHHHhcCCCCEEEEecccCCCCCcccccccccccccc
Q 001735 472 IAMEALCEVLHSTQPLIVYFPDSSLWLSRAVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPNF 551 (1019)
Q Consensus 472 ~~i~~L~e~~~~~~p~Iiff~eid~~~~~~~~~~~~~~~~s~~~~~l~~l~g~v~vI~~~~~~d~~~~~~~~~~~~~~~~ 551 (1019)
--+..+|+++.+.+|.|||||||+.|+........+..+.+.|..+|. .|.++|||+||..+ -.+
T Consensus 265 ~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~--~g~i~vIgATt~~E-~~~------------ 329 (758)
T PRK11034 265 KRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQE-FSN------------ 329 (758)
T ss_pred HHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh--CCCeEEEecCChHH-HHH------------
Confidence 367889999988899999999999997554323334567777777665 58999998887643 000
Q ss_pred ccccCCCCchhhhhcccccCCCcchHHHHhcccceEEEcCCChHHHHHHHHHHHHHHhhh---hhhhhhHHHHHHHHhhc
Q 001735 552 GRLAKLPLPLQRLTEGLKATKRSDDNEIYNLFTNVLSIHPPKEEDLLRTFNKQVEEDRRI---VIYRSNLNELHKVLEDH 628 (1019)
Q Consensus 552 ~~~~~~~~~~~~LvIGmTNR~d~iDeaL~rrFe~~~eI~LPdee~Rl~Il~Iht~k~~~~---~~~~~~v~~l~~~l~t~ 628 (1019)
.-..|+||.|||. .|+|+.|+.+.+.+||+.+..+.... ...+.-+..... .+.
T Consensus 330 --------------------~~~~D~AL~rRFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~--ls~ 386 (758)
T PRK11034 330 --------------------IFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVE--LAV 386 (758)
T ss_pred --------------------HhhccHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHH--Hhh
Confidence 0247999999995 79999999999999999875443221 111111222111 122
Q ss_pred cC-CccccccccccchhhhHHhhhhHHhhhccc-ccccCCCCCccCCceeecHHHHHHHHHHhhhhhhccCCCccccccc
Q 001735 629 EL-SCTDLLHVNTDGVILTKQRAEKVVGWAKNH-YLSSCSFPSVKGQRLHLPRESLEIAILRLKEQETASRKPTQNLKNL 706 (1019)
Q Consensus 629 ~~-~gaDL~~Lct~~~~~s~~~~~~~V~~A~s~-~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~~~~~~~~~~~l~~~ 706 (1019)
.| .+.-|-+ .+. .++..|-.. .+. +. ...+-.|+.+|+...+.+.... +...+
T Consensus 387 ryi~~r~lPd---Kai--------dlldea~a~~~~~----~~-~~~~~~v~~~~i~~v~~~~tgi---------p~~~~ 441 (758)
T PRK11034 387 KYINDRHLPD---KAI--------DVIDEAGARARLM----PV-SKRKKTVNVADIESVVARIARI---------PEKSV 441 (758)
T ss_pred ccccCccChH---HHH--------HHHHHHHHhhccC----cc-cccccccChhhHHHHHHHHhCC---------Chhhh
Confidence 22 2221100 000 000000000 000 10 0112246667777666554321 11111
Q ss_pred chhh------hhhhhcccccCCCCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHH
Q 001735 707 AKDE------YESNFVSAVVPPGEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTL 780 (1019)
Q Consensus 707 ~~~e------~e~~~~~~ii~~~e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~ 780 (1019)
..++ ++..+. ..|.|++++++.|.+.+...... + ....+|..++||+||||||||+
T Consensus 442 ~~~~~~~l~~l~~~L~-------------~~ViGQ~~ai~~l~~~i~~~~~g--l---~~~~kp~~~~Lf~GP~GvGKT~ 503 (758)
T PRK11034 442 SQSDRDTLKNLGDRLK-------------MLVFGQDKAIEALTEAIKMSRAG--L---GHEHKPVGSFLFAGPTGVGKTE 503 (758)
T ss_pred hhhHHHHHHHHHHHhc-------------ceEeCcHHHHHHHHHHHHHHhcc--c---cCCCCCcceEEEECCCCCCHHH
Confidence 1111 111111 24688999999999988642110 0 0012455679999999999999
Q ss_pred HHHHHHHHhCCcEEEEeccccch-----hhhhhHHHH-----HHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHH
Q 001735 781 LAKALATEAGANFISITGSTLTS-----KWFGDAEKL-----TKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATR 850 (1019)
Q Consensus 781 LArAIA~elg~~fi~Is~seL~s-----~~~Ge~e~~-----I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ 850 (1019)
+|+++|..++.+|+.++++++.. ..+|..... ...+....++.+.+||||||||.+- .
T Consensus 504 lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~------------~ 571 (758)
T PRK11034 504 VTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAH------------P 571 (758)
T ss_pred HHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhh------------H
Confidence 99999999999999999987642 222211000 1123333455667999999999973 2
Q ss_pred HHHHHHHhhhcccc-c------cCCCcEEEEEecCCC-------------------------CCCcHHHHhhCCCCcccC
Q 001735 851 RMRNEFMSAWDGLR-S------KESQKILILGATNRP-------------------------FDLDDAVIRRLPRRIYVD 898 (1019)
Q Consensus 851 ril~~LL~~Ldgl~-~------~~~~~VLVIaTTN~p-------------------------~~LD~aLlrRFd~~I~V~ 898 (1019)
.+.+.|++.|+.-. . ..-.+++||+|||.- ..+.|+++.|++.++.|+
T Consensus 572 ~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~ 651 (758)
T PRK11034 572 DVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFD 651 (758)
T ss_pred HHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcC
Confidence 35667777776321 1 122468899999832 125688899999999999
Q ss_pred CCCHHHHHHHHHHHHhc-------cCCC---CccCHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHH
Q 001735 899 LPDAENRMKILRIFLAH-------ESLE---SGFQFNELANAT--EGYSGSDLKNLCIAAAYRPVQELLE 956 (1019)
Q Consensus 899 lPd~eeR~eILk~~L~~-------~~l~---~dvdl~~LA~~T--eG~SgaDL~~L~~~Aa~~Airr~l~ 956 (1019)
+.+.++..+|+..++.. .++. ++..+..|+... ..|-.+.|+.+++.-...++.+.+-
T Consensus 652 ~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~~il 721 (758)
T PRK11034 652 HLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANELL 721 (758)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 99999999999877652 1222 122244555432 2345688888888877777766543
No 48
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.2e-21 Score=223.53 Aligned_cols=261 Identities=19% Similarity=0.196 Sum_probs=191.1
Q ss_pred cccccccccccccchhhHHHHHHhhhhcccCcccccccccccCCCCCceeeccCCChhHHHHHHHHHHHhhcCCcEEEee
Q 001735 176 KINISWDTFPYYINENTKSLLVECVGSHLKHKKFTATFGARLTSSSGRILLRSVPGTELYRERLIRALARELQVPLLVLD 255 (1019)
Q Consensus 176 ~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~~l~~~s~rILL~~~pgsE~Yqe~L~kALA~~~~a~LL~lD 255 (1019)
.=+|.|++||.. +..|+.|.+++...+..++.+ ..|.++-+.|||+|||| ...+||+||+|-+.+|.+.-+-
T Consensus 147 ~~~v~~~di~gl--~~~k~~l~e~vi~p~lr~d~F----~glr~p~rglLLfGPpg--tGKtmL~~aiAsE~~atff~iS 218 (428)
T KOG0740|consen 147 LRNVGWDDIAGL--EDAKQSLKEAVILPLLRPDLF----LGLREPVRGLLLFGPPG--TGKTMLAKAIATESGATFFNIS 218 (428)
T ss_pred CCcccccCCcch--hhHHHHhhhhhhhcccchHhh----hccccccchhheecCCC--CchHHHHHHHHhhhcceEeecc
Confidence 446899999999 999999999999999988874 57999999999999999 7999999999999998865444
Q ss_pred cCCCCCCCCCCCCCCccCCCcccccccccccccccCcchhhccccccccCCCCchHHHHHHHHHHHhhcCCccHHHHHhh
Q 001735 256 SSVLAPYDFADDSSDCESDNYEETSESEVEDENDASNEEEWTSSNEARTDGSDSEADMQATAEAALKKLVPFNLEELEKK 335 (1019)
Q Consensus 256 s~~l~~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 335 (1019)
.+.|++
T Consensus 219 assLts-------------------------------------------------------------------------- 224 (428)
T KOG0740|consen 219 ASSLTS-------------------------------------------------------------------------- 224 (428)
T ss_pred HHHhhh--------------------------------------------------------------------------
Confidence 432221
Q ss_pred hccccCCCccccccccCCCCccccccccCCCeEEEeCCCcccccccceeeeccccCCCCCCCcccccCCCCCCCCcccEE
Q 001735 336 LSGELDSSSESSKSEAAEPSDTSKRLLKKGDRVKYIGPSVRVEADNRIILGKIMTSDGPKNAYTIIPDRALSSGQRGEVY 415 (1019)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdrvk~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~g~v~ 415 (1019)
||+|.+.
T Consensus 225 ---------------------------------K~~Ge~e---------------------------------------- 231 (428)
T KOG0740|consen 225 ---------------------------------KYVGESE---------------------------------------- 231 (428)
T ss_pred ---------------------------------hccChHH----------------------------------------
Confidence 3333221
Q ss_pred eecCCcceeeeccccCCCCCCCCCCcccCCCCCCCcccccccccccccccchhhhhhHHHHHHHHHhhcCCeEEEEcCch
Q 001735 416 EVNGDRAAVILDISADNKGEGEKDDKVAEQPARPPVYWIDVKHIEHDLDTQAEDCYIAMEALCEVLHSTQPLIVYFPDSS 495 (1019)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~e~~~~~~p~Iiff~eid 495 (1019)
-+|.+||++|+..||+|||+||||
T Consensus 232 --------------------------------------------------------K~vralf~vAr~~qPsvifidEid 255 (428)
T KOG0740|consen 232 --------------------------------------------------------KLVRALFKVARSLQPSVIFIDEID 255 (428)
T ss_pred --------------------------------------------------------HHHHHHHHHHHhcCCeEEEechhH
Confidence 289999999999999999999999
Q ss_pred hhhhcccCCccHHHHHHHHHHHHhcCCCCEEEEecccCCCCCccccccccccccccccccCCCCchhhhhcccccCCCcc
Q 001735 496 LWLSRAVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPNFGRLAKLPLPLQRLTEGLKATKRSD 575 (1019)
Q Consensus 496 ~~~~~~~~~~~~~~~~s~~~~~l~~l~g~v~vI~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~LvIGmTNR~d~i 575 (1019)
.++.....+.. +....+.+.+ -++.++++..++ + .+||||+||||..|
T Consensus 256 slls~Rs~~e~--e~srr~ktef-----Liq~~~~~s~~~-----------------------d--rvlvigaTN~P~e~ 303 (428)
T KOG0740|consen 256 SLLSKRSDNEH--ESSRRLKTEF-----LLQFDGKNSAPD-----------------------D--RVLVIGATNRPWEL 303 (428)
T ss_pred HHHhhcCCccc--ccchhhhhHH-----HhhhccccCCCC-----------------------C--eEEEEecCCCchHH
Confidence 99854322211 1111111100 012223333322 0 46788999999999
Q ss_pred hHHHHhcccceEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhccCCccccccccccchhhhHHhhhhHHh
Q 001735 576 DNEIYNLFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLEDHELSCTDLLHVNTDGVILTKQRAEKVVG 655 (1019)
Q Consensus 576 DeaL~rrFe~~~eI~LPdee~Rl~Il~Iht~k~~~~~~~~~~v~~l~~~l~t~~~~gaDL~~Lct~~~~~s~~~~~~~V~ 655 (1019)
|+|++|||-..+||||||.++|.++|+.-+.+. .......++..|++ .|-||+|.|+.+||.++++--.......
T Consensus 304 Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~-~~~l~~~d~~~l~~--~Tegysgsdi~~l~kea~~~p~r~~~~~-- 378 (428)
T KOG0740|consen 304 DEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQ-PNGLSDLDISLLAK--VTEGYSGSDITALCKEAAMGPLRELGGT-- 378 (428)
T ss_pred HHHHHHHhhceeeecCCCHHHHHHHHHHHHHhC-CCCccHHHHHHHHH--HhcCcccccHHHHHHHhhcCchhhcccc--
Confidence 999999999999999999999999999987776 66777788888888 5668899999999998876554433221
Q ss_pred hhcccccccCCCCCccCCceeecHHHHHHHHHHhhhh
Q 001735 656 WAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQ 692 (1019)
Q Consensus 656 ~A~s~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~ 692 (1019)
-........+ .-.+...||..++..++++
T Consensus 379 ~~~~~~~~~~--------~r~i~~~df~~a~~~i~~~ 407 (428)
T KOG0740|consen 379 TDLEFIDADK--------IRPITYPDFKNAFKNIKPS 407 (428)
T ss_pred hhhhhcchhc--------cCCCCcchHHHHHHhhccc
Confidence 0111111111 1235567899999888876
No 49
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.86 E-value=1.7e-21 Score=224.25 Aligned_cols=154 Identities=8% Similarity=0.141 Sum_probs=112.1
Q ss_pred HHHHHHHHHhhcCCeEEEEcCchhhhhccc--CCc---cHHHHHHHHHHHHhcCC--CCEEEEecccCCCCCcccccccc
Q 001735 473 AMEALCEVLHSTQPLIVYFPDSSLWLSRAV--PRC---NRKEFVRKVEEMFDQLS--GPVVLICGQNKNETGPKEKEKFT 545 (1019)
Q Consensus 473 ~i~~L~e~~~~~~p~Iiff~eid~~~~~~~--~~~---~~~~~~s~~~~~l~~l~--g~v~vI~~~~~~d~~~~~~~~~~ 545 (1019)
.+..+|+.|+..+|+||||||||.++.... ..+ ...+++..|...|++++ ++|+|
T Consensus 226 ~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~V------------------ 287 (398)
T PTZ00454 226 MVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKV------------------ 287 (398)
T ss_pred HHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEE------------------
Confidence 567789999999999999999999864321 111 11233344444444433 23444
Q ss_pred ccccccccccCCCCchhhhhcccccCCCcchHHHHh--cccceEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001735 546 MILPNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHK 623 (1019)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~r--rFe~~~eI~LPdee~Rl~Il~Iht~k~~~~~~~~~~v~~l~~ 623 (1019)
|++||++|.||+||+| ||+.+|+|++|+.++|.+||++|+.++. ...+.+++.++.
T Consensus 288 --------------------I~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~--l~~dvd~~~la~ 345 (398)
T PTZ00454 288 --------------------IMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMN--LSEEVDLEDFVS 345 (398)
T ss_pred --------------------EEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCC--CCcccCHHHHHH
Confidence 4778888999999998 9999999999999999999999976543 123345666655
Q ss_pred HHhhccCCccccccccccchhhhHHhhhhHHhhhcccccccCCCCCccCCceeecHHHHHHHHHHhhh
Q 001735 624 VLEDHELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKE 691 (1019)
Q Consensus 624 ~l~t~~~~gaDL~~Lct~~~~~s~~~~~~~V~~A~s~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p 691 (1019)
.+.||+|+||.+||.++...+..+ ++..|+.+||..|+.++..
T Consensus 346 --~t~g~sgaDI~~l~~eA~~~A~r~-----------------------~~~~i~~~df~~A~~~v~~ 388 (398)
T PTZ00454 346 --RPEKISAADIAAICQEAGMQAVRK-----------------------NRYVILPKDFEKGYKTVVR 388 (398)
T ss_pred --HcCCCCHHHHHHHHHHHHHHHHHc-----------------------CCCccCHHHHHHHHHHHHh
Confidence 788999999999998776555221 2336889999999988764
No 50
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=3e-21 Score=203.35 Aligned_cols=159 Identities=17% Similarity=0.216 Sum_probs=121.5
Q ss_pred HHHHHHHHHhhcCCeEEEEcCchhhhhccc--CCccHHHHHHHHHHHHhcCCCCEEEEecccCCCCCccccccccccccc
Q 001735 473 AMEALCEVLHSTQPLIVYFPDSSLWLSRAV--PRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPN 550 (1019)
Q Consensus 473 ~i~~L~e~~~~~~p~Iiff~eid~~~~~~~--~~~~~~~~~s~~~~~l~~l~g~v~vI~~~~~~d~~~~~~~~~~~~~~~ 550 (1019)
.+..||=-|+.+-|+|||.||||.+=.+.+ ...--.+.-.+.+++|+.|||= -+++
T Consensus 228 mvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgf----eatk------------------ 285 (404)
T KOG0728|consen 228 MVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGF----EATK------------------ 285 (404)
T ss_pred HHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccc----cccc------------------
Confidence 788999999999999999999998832211 1111235556777888888862 1221
Q ss_pred cccccCCCCchhhhhcccccCCCcchHHHHh--cccceEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhc
Q 001735 551 FGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLEDH 628 (1019)
Q Consensus 551 ~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~r--rFe~~~eI~LPdee~Rl~Il~Iht~k~~~~~~~~~~v~~l~~~l~t~ 628 (1019)
|+-||=+|||.|.+|+||+| |.|+.||||+|++++|++||+||-.+|. ..-..|+..+++ +-.
T Consensus 286 -----------nikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmn--l~rgi~l~kiae--km~ 350 (404)
T KOG0728|consen 286 -----------NIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMN--LTRGINLRKIAE--KMP 350 (404)
T ss_pred -----------ceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhc--hhcccCHHHHHH--hCC
Confidence 23366789999999999999 9999999999999999999999965543 223456777877 677
Q ss_pred cCCccccccccccchhhhHHhhhhHHhhhcccccccCCCCCccCCceeecHHHHHHHHHHhhh
Q 001735 629 ELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKE 691 (1019)
Q Consensus 629 ~~~gaDL~~Lct~~~~~s~~~~~~~V~~A~s~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p 691 (1019)
|-+||++.++||++-.++-. .-++.|+.+||+.|+.++-.
T Consensus 351 gasgaevk~vcteagm~alr-----------------------errvhvtqedfemav~kvm~ 390 (404)
T KOG0728|consen 351 GASGAEVKGVCTEAGMYALR-----------------------ERRVHVTQEDFEMAVAKVMQ 390 (404)
T ss_pred CCccchhhhhhhhhhHHHHH-----------------------HhhccccHHHHHHHHHHHHh
Confidence 88999999999988766522 34678999999999987653
No 51
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=4.4e-21 Score=206.32 Aligned_cols=133 Identities=18% Similarity=0.267 Sum_probs=98.2
Q ss_pred HHHHHHHHHhhcCCeEEEEcCchhhhhc-ccCCccH-HHHHHHHHHHHhcCCCCEEEEecccCCCCCccccccccccccc
Q 001735 473 AMEALCEVLHSTQPLIVYFPDSSLWLSR-AVPRCNR-KEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPN 550 (1019)
Q Consensus 473 ~i~~L~e~~~~~~p~Iiff~eid~~~~~-~~~~~~~-~~~~s~~~~~l~~l~g~v~vI~~~~~~d~~~~~~~~~~~~~~~ 550 (1019)
+|.-|||-|+.+.|+|||+||||-+..+ +-.+|.- .+|-- ++|-+|.|= |++
T Consensus 213 LVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKT---EfLVQMqGV-----G~d------------------ 266 (439)
T KOG0739|consen 213 LVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKT---EFLVQMQGV-----GND------------------ 266 (439)
T ss_pred HHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHH---HHHHhhhcc-----ccC------------------
Confidence 8899999999999999999999977533 2222221 23332 333344431 111
Q ss_pred cccccCCCCchhhhhcccccCCCcchHHHHhcccceEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhccC
Q 001735 551 FGRLAKLPLPLQRLTEGLKATKRSDDNEIYNLFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLEDHEL 630 (1019)
Q Consensus 551 ~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~rrFe~~~eI~LPdee~Rl~Il~Iht~k~~~~~~~~~~v~~l~~~l~t~~~ 630 (1019)
+-.+||.|+||-|--+|.||+|||+.-||||||+..+|...|++|+.. ....+...|..+|+. +|-||
T Consensus 267 ---------~~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~-tp~~LT~~d~~eL~~--kTeGy 334 (439)
T KOG0739|consen 267 ---------NDGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGD-TPHVLTEQDFKELAR--KTEGY 334 (439)
T ss_pred ---------CCceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCC-CccccchhhHHHHHh--hcCCC
Confidence 113577788999999999999999999999999999999999999754 444566777888877 88999
Q ss_pred Cccccccccccch
Q 001735 631 SCTDLLHVNTDGV 643 (1019)
Q Consensus 631 ~gaDL~~Lct~~~ 643 (1019)
+|+|+.-+..++.
T Consensus 335 SGsDisivVrDal 347 (439)
T KOG0739|consen 335 SGSDISIVVRDAL 347 (439)
T ss_pred CcCceEEEehhhh
Confidence 9999975444433
No 52
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.85 E-value=5.7e-21 Score=219.77 Aligned_cols=156 Identities=17% Similarity=0.251 Sum_probs=113.8
Q ss_pred HHHHHHHHHhhcCCeEEEEcCchhhhhccc--CCccHHHHHHHHHHHHhcCC-----CCEEEEecccCCCCCcccccccc
Q 001735 473 AMEALCEVLHSTQPLIVYFPDSSLWLSRAV--PRCNRKEFVRKVEEMFDQLS-----GPVVLICGQNKNETGPKEKEKFT 545 (1019)
Q Consensus 473 ~i~~L~e~~~~~~p~Iiff~eid~~~~~~~--~~~~~~~~~s~~~~~l~~l~-----g~v~vI~~~~~~d~~~~~~~~~~ 545 (1019)
.+..+|+.++..+|+||||||||.++.... ..+...++..++..+|..++ ++|.|
T Consensus 212 ~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~V------------------ 273 (389)
T PRK03992 212 LVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKI------------------ 273 (389)
T ss_pred HHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEE------------------
Confidence 567889999999999999999999964321 11111233334444554444 34444
Q ss_pred ccccccccccCCCCchhhhhcccccCCCcchHHHHh--cccceEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001735 546 MILPNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHK 623 (1019)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~r--rFe~~~eI~LPdee~Rl~Il~Iht~k~~~~~~~~~~v~~l~~ 623 (1019)
|++||+++.||+||+| ||++.++|++|+.++|.+||++|+.++.- ..+.+++.++.
T Consensus 274 --------------------I~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~--~~~~~~~~la~ 331 (389)
T PRK03992 274 --------------------IAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNL--ADDVDLEELAE 331 (389)
T ss_pred --------------------EEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCC--CCcCCHHHHHH
Confidence 4777888899999998 99999999999999999999999754321 12345666665
Q ss_pred HHhhccCCccccccccccchhhhHHhhhhHHhhhcccccccCCCCCccCCceeecHHHHHHHHHHhhhhh
Q 001735 624 VLEDHELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQE 693 (1019)
Q Consensus 624 ~l~t~~~~gaDL~~Lct~~~~~s~~~~~~~V~~A~s~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~~ 693 (1019)
.+.||+|+||++||.++...+..+ ++-.|+.+||+.|+.++++..
T Consensus 332 --~t~g~sgadl~~l~~eA~~~a~~~-----------------------~~~~i~~~d~~~A~~~~~~~~ 376 (389)
T PRK03992 332 --LTEGASGADLKAICTEAGMFAIRD-----------------------DRTEVTMEDFLKAIEKVMGKE 376 (389)
T ss_pred --HcCCCCHHHHHHHHHHHHHHHHHc-----------------------CCCCcCHHHHHHHHHHHhccc
Confidence 788999999999998776555221 122478999999999998763
No 53
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.2e-20 Score=226.43 Aligned_cols=156 Identities=12% Similarity=0.164 Sum_probs=122.7
Q ss_pred HHHHHHHHHhhcCCeEEEEcCchhhhhcc------cCCccHHHHHHHHHHHHhcCC--CCEEEEecccCCCCCccccccc
Q 001735 473 AMEALCEVLHSTQPLIVYFPDSSLWLSRA------VPRCNRKEFVRKVEEMFDQLS--GPVVLICGQNKNETGPKEKEKF 544 (1019)
Q Consensus 473 ~i~~L~e~~~~~~p~Iiff~eid~~~~~~------~~~~~~~~~~s~~~~~l~~l~--g~v~vI~~~~~~d~~~~~~~~~ 544 (1019)
.|..||..|++.-|+|||+||||-.-+.. -..+.|++.++-|+..||++. +.||||
T Consensus 391 rvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~---------------- 454 (774)
T KOG0731|consen 391 RVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVL---------------- 454 (774)
T ss_pred HHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEE----------------
Confidence 68899999999999999999999884333 245567888999999999996 345555
Q ss_pred cccccccccccCCCCchhhhhcccccCCCcchHHHHh--cccceEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Q 001735 545 TMILPNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELH 622 (1019)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~r--rFe~~~eI~LPdee~Rl~Il~Iht~k~~~~~~~~~~v~~l~ 622 (1019)
+||||+|-+|+||+| |||+++.|.+||..+|.+||++|..+. ....++++...
T Consensus 455 ----------------------a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~---~~~~e~~dl~~ 509 (774)
T KOG0731|consen 455 ----------------------AATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKK---KLDDEDVDLSK 509 (774)
T ss_pred ----------------------eccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhcc---CCCcchhhHHH
Confidence 788888999999999 999999999999999999999995443 23233444333
Q ss_pred HHHhhccCCccccccccccchhhhHHhhhhHHhhhcccccccCCCCCccCCceeecHHHHHHHHHHhhhh
Q 001735 623 KVLEDHELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQ 692 (1019)
Q Consensus 623 ~~l~t~~~~gaDL~~Lct~~~~~s~~~~~~~V~~A~s~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~ 692 (1019)
.+..|.||+||||..||-++++++.. .+.-.|+..+|+.|++++...
T Consensus 510 ~a~~t~gf~gadl~n~~neaa~~a~r-----------------------~~~~~i~~~~~~~a~~Rvi~G 556 (774)
T KOG0731|consen 510 LASLTPGFSGADLANLCNEAALLAAR-----------------------KGLREIGTKDLEYAIERVIAG 556 (774)
T ss_pred HHhcCCCCcHHHHHhhhhHHHHHHHH-----------------------hccCccchhhHHHHHHHHhcc
Confidence 45589999999999999888877622 122346788999999877654
No 54
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1e-20 Score=220.87 Aligned_cols=236 Identities=23% Similarity=0.260 Sum_probs=189.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccC
Q 001735 766 KGILLFGPPGTGKTLLAKALATEA----GANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARG 841 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~el----g~~fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~ 841 (1019)
.+|||+||+|+|||.|+++++.++ -+++..++|+.+.+.......+.+..+|..+.+++|+||++|++|.|++...
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~ 511 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASS 511 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCc
Confidence 579999999999999999999998 4678889999999888888999999999999999999999999999987322
Q ss_pred --CCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHh--hCCCCcccCCCCHHHHHHHHHHHHhccC
Q 001735 842 --GAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHES 917 (1019)
Q Consensus 842 --~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~ 917 (1019)
++...... ..+..|++.+-....+.+..+.||||.+....+++-+.+ +|+..+.++.|+..+|.+||+..+.+..
T Consensus 512 ~e~~q~~~~~-~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~ 590 (952)
T KOG0735|consen 512 NENGQDGVVS-ERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNL 590 (952)
T ss_pred ccCCcchHHH-HHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhh
Confidence 22222233 333444433333333445678999999999999998887 8999999999999999999999998755
Q ss_pred CC-CccCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHHhhCCCcccchhcH
Q 001735 918 LE-SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAYDAASM 996 (1019)
Q Consensus 918 l~-~dvdl~~LA~~TeG~SgaDL~~L~~~Aa~~Airr~l~~~~~~~~~~~~~~~~pLT~eDF~~Al~kv~PS~s~~~~~m 996 (1019)
.. ..-|+..++..|+||...||..++.+|.+.|+.+.+... ..-+|.++|.++++.+.|...+++..-
T Consensus 591 ~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~-----------~klltke~f~ksL~~F~P~aLR~ik~~ 659 (952)
T KOG0735|consen 591 SDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNG-----------PKLLTKELFEKSLKDFVPLALRGIKLV 659 (952)
T ss_pred hhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccC-----------cccchHHHHHHHHHhcChHHhhhcccc
Confidence 22 223455599999999999999999999999985432211 125899999999999999988877766
Q ss_pred HHH-HHHHHHhCCCCccc
Q 001735 997 NEL-RKWNEQYGEGGSRR 1013 (1019)
Q Consensus 997 ~~l-vkW~digG~~g~rk 1013 (1019)
++. ..|.|+||....|+
T Consensus 660 k~tgi~w~digg~~~~k~ 677 (952)
T KOG0735|consen 660 KSTGIRWEDIGGLFEAKK 677 (952)
T ss_pred ccCCCCceecccHHHHHH
Confidence 654 69999999987765
No 55
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.3e-20 Score=214.59 Aligned_cols=154 Identities=12% Similarity=0.148 Sum_probs=109.4
Q ss_pred HHHHHHHHHhhcCCeEEEEcCchhhhhcccCCccH--HHHHHHHHHHHhcCC--CCEEEEecccCCCCCccccccccccc
Q 001735 473 AMEALCEVLHSTQPLIVYFPDSSLWLSRAVPRCNR--KEFVRKVEEMFDQLS--GPVVLICGQNKNETGPKEKEKFTMIL 548 (1019)
Q Consensus 473 ~i~~L~e~~~~~~p~Iiff~eid~~~~~~~~~~~~--~~~~s~~~~~l~~l~--g~v~vI~~~~~~d~~~~~~~~~~~~~ 548 (1019)
-|..||..|++.-|.|||+||||-.=....+...| .+.++.|+.-||+.. ..|||
T Consensus 384 RVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIv--------------------- 442 (752)
T KOG0734|consen 384 RVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIV--------------------- 442 (752)
T ss_pred HHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEE---------------------
Confidence 57789999999999999999999764333334332 223444455555553 23444
Q ss_pred cccccccCCCCchhhhhcccccCCCcchHHHHh--cccceEEEcCCChHHHHHHHHHHHHHHhhhhhh-hhhHHHHHHHH
Q 001735 549 PNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIY-RSNLNELHKVL 625 (1019)
Q Consensus 549 ~~~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~r--rFe~~~eI~LPdee~Rl~Il~Iht~k~~~~~~~-~~~v~~l~~~l 625 (1019)
||+||+||.+|+||+| |||+++.+|+||-.||.+||+.|+ .+.... +.|...|+.
T Consensus 443 -----------------igATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl---~ki~~~~~VD~~iiAR-- 500 (752)
T KOG0734|consen 443 -----------------IGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYL---SKIPLDEDVDPKIIAR-- 500 (752)
T ss_pred -----------------EeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHH---hcCCcccCCCHhHhcc--
Confidence 5888888889999998 999999999999999999999994 444443 445555665
Q ss_pred hhccCCccccccccccchhhhHHhhhhHHhhhcccccccCCCCCccCCceeecHHHHHHHHHHhhhh
Q 001735 626 EDHELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQ 692 (1019)
Q Consensus 626 ~t~~~~gaDL~~Lct~~~~~s~~~~~~~V~~A~s~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~ 692 (1019)
-|-||+||||..|.-.+ +++.|. .+...|++++++-|-+++.-.
T Consensus 501 GT~GFsGAdLaNlVNqA----------AlkAa~-------------dga~~VtM~~LE~akDrIlMG 544 (752)
T KOG0734|consen 501 GTPGFSGADLANLVNQA----------ALKAAV-------------DGAEMVTMKHLEFAKDRILMG 544 (752)
T ss_pred CCCCCchHHHHHHHHHH----------HHHHHh-------------cCcccccHHHHhhhhhheeec
Confidence 78899999998763211 122232 334578999999888777643
No 56
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=4e-20 Score=201.07 Aligned_cols=249 Identities=29% Similarity=0.363 Sum_probs=188.5
Q ss_pred cccCCCCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-------
Q 001735 718 AVVPPGEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAG------- 790 (1019)
Q Consensus 718 ~ii~~~e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg------- 790 (1019)
.++|..+-.--|+.++--..+|+.|..++...+...+.-....++...+-|||+||||||||+|++|+|+.+.
T Consensus 130 w~LPa~eF~glWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y 209 (423)
T KOG0744|consen 130 WYLPAAEFDGLWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRY 209 (423)
T ss_pred eeccchhhhhhHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCcc
Confidence 3455555556788888888899999998877665555444455566778899999999999999999999983
Q ss_pred --CcEEEEeccccchhhhhhHHHHHHHHHHHHHhcC-----CeEEEeccchhhhhccCC---CchhHHHHHHHHHHHhhh
Q 001735 791 --ANFISITGSTLTSKWFGDAEKLTKALFSFASKLA-----PVIIFVDEVDSLLGARGG---AFEHEATRRMRNEFMSAW 860 (1019)
Q Consensus 791 --~~fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark~~-----PsIIfIDEID~L~~~r~~---~~~~e~~~ril~~LL~~L 860 (1019)
..++.+++..++++|++++.+.+.++|......- -..++|||++++...|.+ ..++...-|++|++++++
T Consensus 210 ~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQl 289 (423)
T KOG0744|consen 210 YKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQL 289 (423)
T ss_pred ccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHH
Confidence 4679999999999999999999999998865432 347779999999987743 234556678999999999
Q ss_pred ccccccCCCcEEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccC---C--C-------------Ccc
Q 001735 861 DGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHES---L--E-------------SGF 922 (1019)
Q Consensus 861 dgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~---l--~-------------~dv 922 (1019)
|.+.. ..+|++++|+|-.+.+|.|+.+|-|.+.+|++|+...|.+|++..+.... + . .+.
T Consensus 290 DrlK~--~~NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~ 367 (423)
T KOG0744|consen 290 DRLKR--YPNVLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKA 367 (423)
T ss_pred HHhcc--CCCEEEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHh
Confidence 99954 56799999999999999999999999999999999999999998876311 0 0 001
Q ss_pred CHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHHhh
Q 001735 923 QFNELANA-TEGYSGSDLKNLCIAAAYRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQSKAKV 985 (1019)
Q Consensus 923 dl~~LA~~-TeG~SgaDL~~L~~~Aa~~Airr~l~~~~~~~~~~~~~~~~pLT~eDF~~Al~kv 985 (1019)
....++.. +.|.||+-|+.|=-.|.... ....+++.++|..|+...
T Consensus 368 ~~~~~~~~~~~gLSGRtlrkLP~Laha~y-----------------~~~~~v~~~~fl~al~ea 414 (423)
T KOG0744|consen 368 LRNILIELSTVGLSGRTLRKLPLLAHAEY-----------------FRTFTVDLSNFLLALLEA 414 (423)
T ss_pred HHHHHHHHhhcCCccchHhhhhHHHHHhc-----------------cCCCccChHHHHHHHHHH
Confidence 12223333 47888888887643332111 112578999998887543
No 57
>CHL00181 cbbX CbbX; Provisional
Probab=99.82 E-value=3.2e-19 Score=197.57 Aligned_cols=237 Identities=18% Similarity=0.270 Sum_probs=169.1
Q ss_pred ccccChHHHHHHHHHHHHcccCCchhhccCCCCC--CCceEEEEcCCCChHHHHHHHHHHHh---C----CcEEEEeccc
Q 001735 730 DDIGALEDVKKALNELVILPMRRPDLFSRGNLLR--PCKGILLFGPPGTGKTLLAKALATEA---G----ANFISITGST 800 (1019)
Q Consensus 730 dDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~--p~~gVLL~GPpGTGKT~LArAIA~el---g----~~fi~Is~se 800 (1019)
.+++|++++|++|.+++.+ +..+..+.+.++.. +..++||+||||||||++|+++|..+ | .+++.++..+
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 3799999999999998876 33345555455433 23459999999999999999999876 2 3699999999
Q ss_pred cchhhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCC
Q 001735 801 LTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP 880 (1019)
Q Consensus 801 L~s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p 880 (1019)
+.+.+.|+.+..+..+|..| .++||||||++.+...+. .......+...|+..|+.. ...++||++++..
T Consensus 102 l~~~~~g~~~~~~~~~l~~a---~ggVLfIDE~~~l~~~~~---~~~~~~e~~~~L~~~me~~----~~~~~vI~ag~~~ 171 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKA---MGGVLFIDEAYYLYKPDN---ERDYGSEAIEILLQVMENQ----RDDLVVIFAGYKD 171 (287)
T ss_pred HHHHHhccchHHHHHHHHHc---cCCEEEEEccchhccCCC---ccchHHHHHHHHHHHHhcC----CCCEEEEEeCCcH
Confidence 99999998877777888776 358999999999864322 1223456667777777643 2457777777532
Q ss_pred C-----CCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCC-CccCHHHHHHH------hcCCC-HHHHHHHHHHHH
Q 001735 881 F-----DLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANA------TEGYS-GSDLKNLCIAAA 947 (1019)
Q Consensus 881 ~-----~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~------TeG~S-gaDL~~L~~~Aa 947 (1019)
. .++|++.+||+..+.|+.++.+++.+|+..++.+.... ++.....+... ...|. ++++++++..|.
T Consensus 172 ~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~ 251 (287)
T CHL00181 172 RMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRAR 251 (287)
T ss_pred HHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 1 35699999999999999999999999999999865432 11123333332 13344 899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHH
Q 001735 948 YRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQ 980 (1019)
Q Consensus 948 ~~Airr~l~~~~~~~~~~~~~~~~pLT~eDF~~ 980 (1019)
.+...|+...... .........|+.+||.+
T Consensus 252 ~~~~~r~~~~~~~---~~~~~~l~~~~~~d~~~ 281 (287)
T CHL00181 252 MRQANRIFESGGR---VLTKADLVTIEAEDILK 281 (287)
T ss_pred HHHHHHHHcCCCC---CCCHHHHhCCCHHHHhH
Confidence 8888887654211 11223445667777643
No 58
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.81 E-value=4.6e-20 Score=214.13 Aligned_cols=154 Identities=19% Similarity=0.236 Sum_probs=113.1
Q ss_pred HHHHHHHHHhhcCCeEEEEcCchhhhhccc--CCccHHHHHHHHHHHHhcCCC-----CEEEEecccCCCCCcccccccc
Q 001735 473 AMEALCEVLHSTQPLIVYFPDSSLWLSRAV--PRCNRKEFVRKVEEMFDQLSG-----PVVLICGQNKNETGPKEKEKFT 545 (1019)
Q Consensus 473 ~i~~L~e~~~~~~p~Iiff~eid~~~~~~~--~~~~~~~~~s~~~~~l~~l~g-----~v~vI~~~~~~d~~~~~~~~~~ 545 (1019)
.+..+|+.|...+|+||||||||.++.... ..+-...+..++..+|..|+| .|.|
T Consensus 264 ~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~V------------------ 325 (438)
T PTZ00361 264 LVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKV------------------ 325 (438)
T ss_pred HHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEE------------------
Confidence 577899999999999999999999974321 111122333444455555543 4444
Q ss_pred ccccccccccCCCCchhhhhcccccCCCcchHHHHh--cccceEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001735 546 MILPNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHK 623 (1019)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~r--rFe~~~eI~LPdee~Rl~Il~Iht~k~~~~~~~~~~v~~l~~ 623 (1019)
|++||+++.+|+||+| ||+++|+|++||.++|.+||++|+.++.- ..+.+++.++.
T Consensus 326 --------------------I~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l--~~dvdl~~la~ 383 (438)
T PTZ00361 326 --------------------IMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTL--AEDVDLEEFIM 383 (438)
T ss_pred --------------------EEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCC--CcCcCHHHHHH
Confidence 4677888899999998 99999999999999999999999876531 12334555554
Q ss_pred HHhhccCCccccccccccchhhhHHhhhhHHhhhcccccccCCCCCccCCceeecHHHHHHHHHHhhh
Q 001735 624 VLEDHELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKE 691 (1019)
Q Consensus 624 ~l~t~~~~gaDL~~Lct~~~~~s~~~~~~~V~~A~s~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p 691 (1019)
.+.||+||||.++|++|..++..+ ++..|+.+||..|+.++..
T Consensus 384 --~t~g~sgAdI~~i~~eA~~~Alr~-----------------------~r~~Vt~~D~~~A~~~v~~ 426 (438)
T PTZ00361 384 --AKDELSGADIKAICTEAGLLALRE-----------------------RRMKVTQADFRKAKEKVLY 426 (438)
T ss_pred --hcCCCCHHHHHHHHHHHHHHHHHh-----------------------cCCccCHHHHHHHHHHHHh
Confidence 888999999999998776665222 2345899999999998754
No 59
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.7e-20 Score=201.24 Aligned_cols=154 Identities=18% Similarity=0.246 Sum_probs=118.2
Q ss_pred HHHHHHHHHhhcCCeEEEEcCchhhh-hc-ccCCccHHHHHHHHHHHHhcCC-----CCEEEEecccCCCCCcccccccc
Q 001735 473 AMEALCEVLHSTQPLIVYFPDSSLWL-SR-AVPRCNRKEFVRKVEEMFDQLS-----GPVVLICGQNKNETGPKEKEKFT 545 (1019)
Q Consensus 473 ~i~~L~e~~~~~~p~Iiff~eid~~~-~~-~~~~~~~~~~~s~~~~~l~~l~-----g~v~vI~~~~~~d~~~~~~~~~~ 545 (1019)
++..||.+|..+.|||+|+||||.+= .+ --.+.-..+|-.+.+++|+.++ |-|=||
T Consensus 266 lvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvi----------------- 328 (440)
T KOG0726|consen 266 LVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVI----------------- 328 (440)
T ss_pred HHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEE-----------------
Confidence 89999999999999999999999871 11 1112233567777888888887 444444
Q ss_pred ccccccccccCCCCchhhhhcccccCCCcchHHHHh--cccceEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001735 546 MILPNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHK 623 (1019)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~r--rFe~~~eI~LPdee~Rl~Il~Iht~k~~~~~~~~~~v~~l~~ 623 (1019)
=+|||.+.+|+||.| |.|+.|+|++||+..+..||.|||.+|. ...+++.-..
T Consensus 329 ---------------------mATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mt----l~~dVnle~l 383 (440)
T KOG0726|consen 329 ---------------------MATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMT----LAEDVNLEEL 383 (440)
T ss_pred ---------------------EecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccc----hhccccHHHH
Confidence 456666777888887 9999999999999999999999988775 3445544444
Q ss_pred HHhhccCCccccccccccchhhhHHhhhhHHhhhcccccccCCCCCccCCceeecHHHHHHHHHHhhh
Q 001735 624 VLEDHELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKE 691 (1019)
Q Consensus 624 ~l~t~~~~gaDL~~Lct~~~~~s~~~~~~~V~~A~s~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p 691 (1019)
.+....++|||+.++||++-+++-.+ -++.|+++||..|.+.+--
T Consensus 384 i~~kddlSGAdIkAictEaGllAlRe-----------------------rRm~vt~~DF~ka~e~V~~ 428 (440)
T KOG0726|consen 384 IMTKDDLSGADIKAICTEAGLLALRE-----------------------RRMKVTMEDFKKAKEKVLY 428 (440)
T ss_pred hhcccccccccHHHHHHHHhHHHHHH-----------------------HHhhccHHHHHHHHHHHHH
Confidence 55777999999999999988776332 2567889999999877643
No 60
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.81 E-value=4.7e-20 Score=218.35 Aligned_cols=154 Identities=12% Similarity=0.179 Sum_probs=112.1
Q ss_pred HHHHHHHHHhhcCCeEEEEcCchhhhhcccC-----CccHHHHHHHHHHHHhcCCC--CEEEEecccCCCCCcccccccc
Q 001735 473 AMEALCEVLHSTQPLIVYFPDSSLWLSRAVP-----RCNRKEFVRKVEEMFDQLSG--PVVLICGQNKNETGPKEKEKFT 545 (1019)
Q Consensus 473 ~i~~L~e~~~~~~p~Iiff~eid~~~~~~~~-----~~~~~~~~s~~~~~l~~l~g--~v~vI~~~~~~d~~~~~~~~~~ 545 (1019)
.+..+|+.|+..+|.||||||||.+...... .....++++.|+..||++.+ .|+|
T Consensus 135 ~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~v------------------ 196 (495)
T TIGR01241 135 RVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIV------------------ 196 (495)
T ss_pred HHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEE------------------
Confidence 4678899999999999999999999643211 11223456666666666542 3444
Q ss_pred ccccccccccCCCCchhhhhcccccCCCcchHHHHh--cccceEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001735 546 MILPNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHK 623 (1019)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~r--rFe~~~eI~LPdee~Rl~Il~Iht~k~~~~~~~~~~v~~l~~ 623 (1019)
||+||+++.||+||+| ||+++++|++|+.++|.+||++|+.+... ..+.++..++.
T Consensus 197 --------------------I~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~--~~~~~l~~la~ 254 (495)
T TIGR01241 197 --------------------IAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL--APDVDLKAVAR 254 (495)
T ss_pred --------------------EEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC--CcchhHHHHHH
Confidence 5778888899999998 99999999999999999999999754321 13345556655
Q ss_pred HHhhccCCccccccccccchhhhHHhhhhHHhhhcccccccCCCCCccCCceeecHHHHHHHHHHhhh
Q 001735 624 VLEDHELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKE 691 (1019)
Q Consensus 624 ~l~t~~~~gaDL~~Lct~~~~~s~~~~~~~V~~A~s~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p 691 (1019)
.+.||+|+||+.||.++++.+.. .++-.|+.++|..|+.++..
T Consensus 255 --~t~G~sgadl~~l~~eA~~~a~~-----------------------~~~~~i~~~~l~~a~~~~~~ 297 (495)
T TIGR01241 255 --RTPGFSGADLANLLNEAALLAAR-----------------------KNKTEITMNDIEEAIDRVIA 297 (495)
T ss_pred --hCCCCCHHHHHHHHHHHHHHHHH-----------------------cCCCCCCHHHHHHHHHHHhc
Confidence 78899999999998765543311 11224788999999987764
No 61
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.80 E-value=9.3e-19 Score=190.99 Aligned_cols=218 Identities=18% Similarity=0.246 Sum_probs=157.5
Q ss_pred ccccccChHHHHHHHHHHHHcccCCchhhccCCCC--CCCceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEec
Q 001735 728 RFDDIGALEDVKKALNELVILPMRRPDLFSRGNLL--RPCKGILLFGPPGTGKTLLAKALATEA-------GANFISITG 798 (1019)
Q Consensus 728 tfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~--~p~~gVLL~GPpGTGKT~LArAIA~el-------g~~fi~Is~ 798 (1019)
.+++++|++++|++|++++.++........ .|.. ....++||+||||||||++|+++|+.+ ..+++.+++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~-~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~ 82 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKE-EGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER 82 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHH-cCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH
Confidence 367899999999999999877644322222 2322 223579999999999999999999875 247889999
Q ss_pred cccchhhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecC
Q 001735 799 STLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATN 878 (1019)
Q Consensus 799 seL~s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN 878 (1019)
+++.+.+.|+....+..+|..|. ++||||||+|.|.... +.......+..|+..++.. ...+++|+++.
T Consensus 83 ~~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~----~~~~~~~~i~~Ll~~~e~~----~~~~~vila~~ 151 (261)
T TIGR02881 83 ADLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGG----EKDFGKEAIDTLVKGMEDN----RNEFVLILAGY 151 (261)
T ss_pred HHhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCC----ccchHHHHHHHHHHHHhcc----CCCEEEEecCC
Confidence 99999999999888999998764 5899999999996321 1222345566777776553 23455555543
Q ss_pred CC-----CCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCC-CccCHHHHHHHh---------cCCCHHHHHHHH
Q 001735 879 RP-----FDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANAT---------EGYSGSDLKNLC 943 (1019)
Q Consensus 879 ~p-----~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~T---------eG~SgaDL~~L~ 943 (1019)
.. ..+++++.+||+..+.++.++.+++.+|++.++...... ++..+..|+... ..-+++.+.+++
T Consensus 152 ~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~ 231 (261)
T TIGR02881 152 SDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNII 231 (261)
T ss_pred cchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHH
Confidence 32 237889999999889999999999999999999865432 222244443321 123678999999
Q ss_pred HHHHHHHHHHHHHH
Q 001735 944 IAAAYRPVQELLEE 957 (1019)
Q Consensus 944 ~~Aa~~Airr~l~~ 957 (1019)
..|......+++.+
T Consensus 232 e~a~~~~~~r~~~~ 245 (261)
T TIGR02881 232 EKAIRRQAVRLLDK 245 (261)
T ss_pred HHHHHHHHHHHhcc
Confidence 99888777776543
No 62
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.80 E-value=1.1e-18 Score=193.19 Aligned_cols=237 Identities=18% Similarity=0.236 Sum_probs=170.5
Q ss_pred cccChHHHHHHHHHHHHcccCCchhhccCCCCC--CCceEEEEcCCCChHHHHHHHHHHHhC-------CcEEEEecccc
Q 001735 731 DIGALEDVKKALNELVILPMRRPDLFSRGNLLR--PCKGILLFGPPGTGKTLLAKALATEAG-------ANFISITGSTL 801 (1019)
Q Consensus 731 DIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~--p~~gVLL~GPpGTGKT~LArAIA~elg-------~~fi~Is~seL 801 (1019)
+++|++++|++|.+++.+ +..++.+.+.|+.. |..++||+||||||||++|+++|..+. .+|+.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 589999999999998877 44555555555332 456899999999999999999998762 37999999999
Q ss_pred chhhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCC-
Q 001735 802 TSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP- 880 (1019)
Q Consensus 802 ~s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p- 880 (1019)
.+.+.|..+..+..+|..|. ++||||||++.+...+.. ......+.+.|+..|+.. ...++||++++..
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~~---~~~~~~~~~~Ll~~le~~----~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDNE---RDYGQEAIEILLQVMENQ----RDDLVVILAGYKDR 171 (284)
T ss_pred hHhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCCc---cchHHHHHHHHHHHHhcC----CCCEEEEEeCCcHH
Confidence 88888888778888888763 489999999998643321 223445666777777643 2457777776532
Q ss_pred -C---CCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCC-CccCHHHHHHHh------cC-CCHHHHHHHHHHHHH
Q 001735 881 -F---DLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANAT------EG-YSGSDLKNLCIAAAY 948 (1019)
Q Consensus 881 -~---~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~T------eG-~SgaDL~~L~~~Aa~ 948 (1019)
+ .+++++.+||...|.||.++.+++..|++.++.+.... +...+..++... +. -+++++++++..|+.
T Consensus 172 ~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~ 251 (284)
T TIGR02880 172 MDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARL 251 (284)
T ss_pred HHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHH
Confidence 2 25899999999999999999999999999999875432 122233344331 11 257999999999988
Q ss_pred HHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHH
Q 001735 949 RPVQELLEEERKRGKNDAAPVLRPLKLEDFIQS 981 (1019)
Q Consensus 949 ~Airr~l~~~~~~~~~~~~~~~~pLT~eDF~~A 981 (1019)
+...|+..+.. ..........|+.+|+..+
T Consensus 252 ~~~~r~~~~~~---~~~~~~~~~~~~~~d~~~~ 281 (284)
T TIGR02880 252 RQANRLFCDLD---RVLDKSDLETIDPEDLLAS 281 (284)
T ss_pred HHHHHHhcCcC---CCCCHHHHhCCCHHHHhhc
Confidence 88777754321 1112234456777777543
No 63
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.79 E-value=4.5e-19 Score=170.56 Aligned_cols=130 Identities=41% Similarity=0.654 Sum_probs=115.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhhhhHHHHHHHHHHHHHhcC-CeEEEeccchhhhhccCCCchh
Q 001735 768 ILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLA-PVIIFVDEVDSLLGARGGAFEH 846 (1019)
Q Consensus 768 VLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark~~-PsIIfIDEID~L~~~r~~~~~~ 846 (1019)
|||+||||||||++|+++|+.++.+++.+++.++.+.+.+..+..+..+|..++... |+||||||+|.+.+.. .....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~-~~~~~ 79 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS-QPSSS 79 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC-STSSS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc-ccccc
Confidence 799999999999999999999999999999999998889999999999999999888 9999999999999887 33345
Q ss_pred HHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHHH-hhCCCCcccCC
Q 001735 847 EATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVI-RRLPRRIYVDL 899 (1019)
Q Consensus 847 e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLl-rRFd~~I~V~l 899 (1019)
.....+.+.|+..++..... ..+++||+|||.++.++++++ +||+..+.+|+
T Consensus 80 ~~~~~~~~~L~~~l~~~~~~-~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 80 SFEQRLLNQLLSLLDNPSSK-NSRVIVIATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHHTTTTT-SSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred cccccccceeeecccccccc-cccceeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 66778888999999887543 357999999999999999999 99999888864
No 64
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.4e-18 Score=193.21 Aligned_cols=208 Identities=31% Similarity=0.528 Sum_probs=163.3
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhh
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWF 806 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s~~~ 806 (1019)
..|++++-.......|+.+... ..+.. .. ..|-++||+|||||||||++|+-||.+.|..+-.+++.++... -
T Consensus 352 ~pl~~ViL~psLe~Rie~lA~a-TaNTK----~h-~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-G 424 (630)
T KOG0742|consen 352 DPLEGVILHPSLEKRIEDLAIA-TANTK----KH-QAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-G 424 (630)
T ss_pred CCcCCeecCHHHHHHHHHHHHH-hcccc----cc-cchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-c
Confidence 3477777677777777665432 12211 11 3466899999999999999999999999999988888877532 2
Q ss_pred hhHHHHHHHHHHHHHhcCC-eEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcH
Q 001735 807 GDAEKLTKALFSFASKLAP-VIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDD 885 (1019)
Q Consensus 807 Ge~e~~I~~lF~~Ark~~P-sIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~LD~ 885 (1019)
.+....|+++|+-++++.. -+|||||.|.++-.|.....++..+..+|.||---. .....++++.+||+|.++|.
T Consensus 425 ~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTG----dqSrdivLvlAtNrpgdlDs 500 (630)
T KOG0742|consen 425 AQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG----DQSRDIVLVLATNRPGDLDS 500 (630)
T ss_pred hHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhc----ccccceEEEeccCCccchhH
Confidence 3456789999999988765 488999999999998887778888999999875322 23457889999999999999
Q ss_pred HHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCC-----------------------Cc----cCHHHHHHHhcCCCHHH
Q 001735 886 AVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-----------------------SG----FQFNELANATEGYSGSD 938 (1019)
Q Consensus 886 aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-----------------------~d----vdl~~LA~~TeG~SgaD 938 (1019)
++-+||+..++||+|..++|..+|..|+.++-+. .. --+.+.|+.|+||||++
T Consensus 501 AV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGRE 580 (630)
T KOG0742|consen 501 AVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGRE 580 (630)
T ss_pred HHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHH
Confidence 9999999999999999999999999988753321 01 11567799999999999
Q ss_pred HHHHHHH
Q 001735 939 LKNLCIA 945 (1019)
Q Consensus 939 L~~L~~~ 945 (1019)
|..|+..
T Consensus 581 iakLva~ 587 (630)
T KOG0742|consen 581 IAKLVAS 587 (630)
T ss_pred HHHHHHH
Confidence 9998743
No 65
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.79 E-value=2.7e-19 Score=189.91 Aligned_cols=156 Identities=19% Similarity=0.239 Sum_probs=117.0
Q ss_pred HHHHHHHHHhhcCCeEEEEcCchhh-hhcccCC--ccHHHHHHHHHHHHhcCC-CCEEEEecccCCCCCccccccccccc
Q 001735 473 AMEALCEVLHSTQPLIVYFPDSSLW-LSRAVPR--CNRKEFVRKVEEMFDQLS-GPVVLICGQNKNETGPKEKEKFTMIL 548 (1019)
Q Consensus 473 ~i~~L~e~~~~~~p~Iiff~eid~~-~~~~~~~--~~~~~~~s~~~~~l~~l~-g~v~vI~~~~~~d~~~~~~~~~~~~~ 548 (1019)
-|..||+-|++..|.|||+||+|.+ +.+.-|+ ..-.++++.|++-||++- +-+||
T Consensus 198 ~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVv--------------------- 256 (368)
T COG1223 198 RIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVV--------------------- 256 (368)
T ss_pred HHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceE---------------------
Confidence 6789999999999999999999998 3221111 133577888888887774 33333
Q ss_pred cccccccCCCCchhhhhcccccCCCcchHHHHhcccceEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhc
Q 001735 549 PNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYNLFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLEDH 628 (1019)
Q Consensus 549 ~~~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~rrFe~~~eI~LPdee~Rl~Il~Iht~k~~~~~~~~~~v~~l~~~l~t~ 628 (1019)
.|++|||++++|+|++.||+.+|||.||+++.|+.|+....+++- ...+.+++.++. +++
T Consensus 257 ----------------tIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~P--lpv~~~~~~~~~--~t~ 316 (368)
T COG1223 257 ----------------TIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFP--LPVDADLRYLAA--KTK 316 (368)
T ss_pred ----------------EEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCC--CccccCHHHHHH--HhC
Confidence 368889999999999999999999999999999999998865543 334455777766 899
Q ss_pred cCCccccccccccchhhhHHhhhhHHhhhcccccccCCCCCccCCceeecHHHHHHHHHHhhh
Q 001735 629 ELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKE 691 (1019)
Q Consensus 629 ~~~gaDL~~Lct~~~~~s~~~~~~~V~~A~s~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p 691 (1019)
|++|-||.. .++..|+-+++ ..++=+|..+||..|+.+..+
T Consensus 317 g~SgRdike--------------kvlK~aLh~Ai--------~ed~e~v~~edie~al~k~r~ 357 (368)
T COG1223 317 GMSGRDIKE--------------KVLKTALHRAI--------AEDREKVEREDIEKALKKERK 357 (368)
T ss_pred CCCchhHHH--------------HHHHHHHHHHH--------HhchhhhhHHHHHHHHHhhcc
Confidence 999988853 34444544333 245557899999999986443
No 66
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.79 E-value=3.6e-19 Score=225.78 Aligned_cols=156 Identities=10% Similarity=0.098 Sum_probs=112.9
Q ss_pred HHHHHHHHHhhcCCeEEEEcCchhhhhcccCCccHHHHHHHHHHHHhcCCCCEEEEecccCCCCCccccccccccccccc
Q 001735 473 AMEALCEVLHSTQPLIVYFPDSSLWLSRAVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPNFG 552 (1019)
Q Consensus 473 ~i~~L~e~~~~~~p~Iiff~eid~~~~~~~~~~~~~~~~s~~~~~l~~l~g~v~vI~~~~~~d~~~~~~~~~~~~~~~~~ 552 (1019)
-|..+||.|++.+|.||||||||.+.+.. + ....++.|+..|++..+. +++
T Consensus 1720 rIr~lFelARk~SPCIIFIDEIDaL~~~d---s-~~ltL~qLLneLDg~~~~----~s~--------------------- 1770 (2281)
T CHL00206 1720 YITLQFELAKAMSPCIIWIPNIHDLNVNE---S-NYLSLGLLVNSLSRDCER----CST--------------------- 1770 (2281)
T ss_pred HHHHHHHHHHHCCCeEEEEEchhhcCCCc---c-ceehHHHHHHHhcccccc----CCC---------------------
Confidence 48999999999999999999999997541 1 122356666666654211 000
Q ss_pred cccCCCCchhhhhcccccCCCcchHHHHh--cccceEEEcCCChHHHHHHHHHHHHHHhhhhhhh--hhHHHHHHHHhhc
Q 001735 553 RLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYR--SNLNELHKVLEDH 628 (1019)
Q Consensus 553 ~~~~~~~~~~~LvIGmTNR~d~iDeaL~r--rFe~~~eI~LPdee~Rl~Il~Iht~k~~~~~~~~--~~v~~l~~~l~t~ 628 (1019)
-+++|||+|||||.||+||+| |||++|+|++|+..+|.+|+.|++ ..+...... .+++.++. .|.
T Consensus 1771 --------~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl-~tkg~~L~~~~vdl~~LA~--~T~ 1839 (2281)
T CHL00206 1771 --------RNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLS-YTRGFHLEKKMFHTNGFGS--ITM 1839 (2281)
T ss_pred --------CCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHH-hhcCCCCCcccccHHHHHH--hCC
Confidence 012356889999999999999 999999999999999999999863 222222221 34667776 899
Q ss_pred cCCccccccccccchhhhHHhhhhHHhhhcccccccCCCCCccCCceeecHHHHHHHHHHhhh
Q 001735 629 ELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKE 691 (1019)
Q Consensus 629 ~~~gaDL~~Lct~~~~~s~~~~~~~V~~A~s~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p 691 (1019)
||+||||.+||.+|++++..+ ++-.|+.++|..|+.++..
T Consensus 1840 GfSGADLanLvNEAaliAirq-----------------------~ks~Id~~~I~~Al~Rq~~ 1879 (2281)
T CHL00206 1840 GSNARDLVALTNEALSISITQ-----------------------KKSIIDTNTIRSALHRQTW 1879 (2281)
T ss_pred CCCHHHHHHHHHHHHHHHHHc-----------------------CCCccCHHHHHHHHHHHHh
Confidence 999999999998888777333 1234677888888887754
No 67
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.77 E-value=1.8e-18 Score=203.71 Aligned_cols=123 Identities=14% Similarity=0.184 Sum_probs=90.5
Q ss_pred HHHHHHHHHhh----cCCeEEEEcCchhhhhccc---CCccHHHHHHHHHHHHhcCC--CCEEEEecccCCCCCcccccc
Q 001735 473 AMEALCEVLHS----TQPLIVYFPDSSLWLSRAV---PRCNRKEFVRKVEEMFDQLS--GPVVLICGQNKNETGPKEKEK 543 (1019)
Q Consensus 473 ~i~~L~e~~~~----~~p~Iiff~eid~~~~~~~---~~~~~~~~~s~~~~~l~~l~--g~v~vI~~~~~~d~~~~~~~~ 543 (1019)
.+..+|+.|+. .+|+||||||+|.++.... .......+++.|+..||++. ++|+||
T Consensus 273 ~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI--------------- 337 (512)
T TIGR03689 273 QIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVI--------------- 337 (512)
T ss_pred HHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEE---------------
Confidence 45667777765 4899999999999975421 12233456778888787775 455555
Q ss_pred ccccccccccccCCCCchhhhhcccccCCCcchHHHHh--cccceEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHH
Q 001735 544 FTMILPNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNEL 621 (1019)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~r--rFe~~~eI~LPdee~Rl~Il~Iht~k~~~~~~~~~~v~~l 621 (1019)
|+||++++||+||+| ||+++|+|++|+.++|.+||+.|+...... ..+
T Consensus 338 -----------------------~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l---~~~---- 387 (512)
T TIGR03689 338 -----------------------GASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPL---DAD---- 387 (512)
T ss_pred -----------------------eccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCc---hHH----
Confidence 788888999999999 999999999999999999999997542211 222
Q ss_pred HHHHhhccCCccccccccccc
Q 001735 622 HKVLEDHELSCTDLLHVNTDG 642 (1019)
Q Consensus 622 ~~~l~t~~~~gaDL~~Lct~~ 642 (1019)
+....|+.++++.++|.++
T Consensus 388 --l~~~~g~~~a~~~al~~~a 406 (512)
T TIGR03689 388 --LAEFDGDREATAAALIQRA 406 (512)
T ss_pred --HHHhcCCCHHHHHHHHHHH
Confidence 1235688888888887653
No 68
>CHL00176 ftsH cell division protein; Validated
Probab=99.76 E-value=2e-18 Score=208.81 Aligned_cols=154 Identities=15% Similarity=0.218 Sum_probs=110.9
Q ss_pred HHHHHHHHHhhcCCeEEEEcCchhhhhccc-----CCccHHHHHHHHHHHHhcCCC--CEEEEecccCCCCCcccccccc
Q 001735 473 AMEALCEVLHSTQPLIVYFPDSSLWLSRAV-----PRCNRKEFVRKVEEMFDQLSG--PVVLICGQNKNETGPKEKEKFT 545 (1019)
Q Consensus 473 ~i~~L~e~~~~~~p~Iiff~eid~~~~~~~-----~~~~~~~~~s~~~~~l~~l~g--~v~vI~~~~~~d~~~~~~~~~~ 545 (1019)
.+..+|+.|+...|.||||||||.+.+... ....+++.+..|+..||+..+ +|+
T Consensus 263 ~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~Vi------------------- 323 (638)
T CHL00176 263 RVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVI------------------- 323 (638)
T ss_pred HHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCee-------------------
Confidence 467789999999999999999999964321 111223445555555554432 334
Q ss_pred ccccccccccCCCCchhhhhcccccCCCcchHHHHh--cccceEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001735 546 MILPNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHK 623 (1019)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~r--rFe~~~eI~LPdee~Rl~Il~Iht~k~~~~~~~~~~v~~l~~ 623 (1019)
|||+||+++.+|+||+| ||+++++|++|+.++|.+||+.|+.+ .....+.++..++.
T Consensus 324 -------------------VIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~--~~~~~d~~l~~lA~ 382 (638)
T CHL00176 324 -------------------VIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARN--KKLSPDVSLELIAR 382 (638)
T ss_pred -------------------EEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhh--cccchhHHHHHHHh
Confidence 45778888899999998 99999999999999999999999765 22223444555555
Q ss_pred HHhhccCCccccccccccchhhhHHhhhhHHhhhcccccccCCCCCccCCceeecHHHHHHHHHHhhh
Q 001735 624 VLEDHELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKE 691 (1019)
Q Consensus 624 ~l~t~~~~gaDL~~Lct~~~~~s~~~~~~~V~~A~s~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p 691 (1019)
.+.||+|+||+.||.++++.+.. .++-.|+.++|..|+.++..
T Consensus 383 --~t~G~sgaDL~~lvneAal~a~r-----------------------~~~~~It~~dl~~Ai~rv~~ 425 (638)
T CHL00176 383 --RTPGFSGADLANLLNEAAILTAR-----------------------RKKATITMKEIDTAIDRVIA 425 (638)
T ss_pred --cCCCCCHHHHHHHHHHHHHHHHH-----------------------hCCCCcCHHHHHHHHHHHHh
Confidence 78899999999998766555411 11224788999999988754
No 69
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=4.1e-18 Score=180.77 Aligned_cols=158 Identities=13% Similarity=0.197 Sum_probs=118.1
Q ss_pred HHHHHHHHHhhcCCeEEEEcCchhh----hhcccCCccHHHHHHHHHHHHhcCCCCEEEEecccCCCCCccccccccccc
Q 001735 473 AMEALCEVLHSTQPLIVYFPDSSLW----LSRAVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMIL 548 (1019)
Q Consensus 473 ~i~~L~e~~~~~~p~Iiff~eid~~----~~~~~~~~~~~~~~s~~~~~l~~l~g~v~vI~~~~~~d~~~~~~~~~~~~~ 548 (1019)
++..-|-.|+...|.|||+||+|.+ +.+-+.. . .+.-.+.+++|..|+|= ++ .+
T Consensus 252 LVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~G-D-REVQRTMLELLNQLDGF-----ss-----~~---------- 309 (424)
T KOG0652|consen 252 LVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAG-D-REVQRTMLELLNQLDGF-----SS-----DD---------- 309 (424)
T ss_pred HHHHHHHHhhccCCeEEEEechhhhccccccccccc-c-HHHHHHHHHHHHhhcCC-----CC-----cc----------
Confidence 7777888999999999999999988 3333322 2 24556777888888751 00 00
Q ss_pred cccccccCCCCchhhhhcccccCCCcchHHHHh--cccceEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHh
Q 001735 549 PNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLE 626 (1019)
Q Consensus 549 ~~~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~r--rFe~~~eI~LPdee~Rl~Il~Iht~k~~~~~~~~~~v~~l~~~l~ 626 (1019)
.+=||.+|||-|-+|+||+| |+++.||||+|++++|.+|+.||-.+|. ...+.|.++|+. .
T Consensus 310 -------------~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMn--v~~DvNfeELaR--s 372 (424)
T KOG0652|consen 310 -------------RVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMN--VSDDVNFEELAR--S 372 (424)
T ss_pred -------------ceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcC--CCCCCCHHHHhh--c
Confidence 01256788888999999999 9999999999999999999999965553 334556777777 6
Q ss_pred hccCCccccccccccchhhhHHhhhhHHhhhcccccccCCCCCccCCceeecHHHHHHHHHHhhhh
Q 001735 627 DHELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQ 692 (1019)
Q Consensus 627 t~~~~gaDL~~Lct~~~~~s~~~~~~~V~~A~s~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~ 692 (1019)
|-+|.||.+.++|.++-.+.-. .+.-.|+.+|||.++.+++.-
T Consensus 373 TddFNGAQcKAVcVEAGMiALR-----------------------r~atev~heDfmegI~eVqak 415 (424)
T KOG0652|consen 373 TDDFNGAQCKAVCVEAGMIALR-----------------------RGATEVTHEDFMEGILEVQAK 415 (424)
T ss_pred ccccCchhheeeehhhhHHHHh-----------------------cccccccHHHHHHHHHHHHHh
Confidence 7788899999999876554411 233457889999999888753
No 70
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=5.2e-18 Score=200.77 Aligned_cols=155 Identities=14% Similarity=0.207 Sum_probs=120.2
Q ss_pred HHHHHHHHHhhcCCeEEEEcCchhhhhcc-----cCCccHHHHHHHHHHHHhcCCC--CEEEEecccCCCCCcccccccc
Q 001735 473 AMEALCEVLHSTQPLIVYFPDSSLWLSRA-----VPRCNRKEFVRKVEEMFDQLSG--PVVLICGQNKNETGPKEKEKFT 545 (1019)
Q Consensus 473 ~i~~L~e~~~~~~p~Iiff~eid~~~~~~-----~~~~~~~~~~s~~~~~l~~l~g--~v~vI~~~~~~d~~~~~~~~~~ 545 (1019)
-+..|||.|+++.|.|||+||||..-++. .....++|..+.++..||+..+ .||||
T Consensus 230 RVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gvivi----------------- 292 (596)
T COG0465 230 RVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVI----------------- 292 (596)
T ss_pred HHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEE-----------------
Confidence 46679999999999999999999874432 2344566778888888888874 34554
Q ss_pred ccccccccccCCCCchhhhhcccccCCCcchHHHHh--cccceEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001735 546 MILPNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHK 623 (1019)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~r--rFe~~~eI~LPdee~Rl~Il~Iht~k~~~~~~~~~~v~~l~~ 623 (1019)
++|||||-+|+||+| ||++++.|++||-.+|.+|+++|+.+ ++...+.++..++.
T Consensus 293 ---------------------aaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~--~~l~~~Vdl~~iAr 349 (596)
T COG0465 293 ---------------------AATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKN--KPLAEDVDLKKIAR 349 (596)
T ss_pred ---------------------ecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhc--CCCCCcCCHHHHhh
Confidence 678888889999999 99999999999999999999999532 22223445555555
Q ss_pred HHhhccCCccccccccccchhhhHHhhhhHHhhhcccccccCCCCCccCCceeecHHHHHHHHHHhhhh
Q 001735 624 VLEDHELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQ 692 (1019)
Q Consensus 624 ~l~t~~~~gaDL~~Lct~~~~~s~~~~~~~V~~A~s~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~ 692 (1019)
.|-||+||||..|+-++++++.. .++..|++.+|..|++++.-.
T Consensus 350 --~tpGfsGAdL~nl~NEAal~aar-----------------------~n~~~i~~~~i~ea~drv~~G 393 (596)
T COG0465 350 --GTPGFSGADLANLLNEAALLAAR-----------------------RNKKEITMRDIEEAIDRVIAG 393 (596)
T ss_pred --hCCCcccchHhhhHHHHHHHHHH-----------------------hcCeeEeccchHHHHHHHhcC
Confidence 89999999999998777776611 234568889999999988754
No 71
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=3.5e-18 Score=181.65 Aligned_cols=155 Identities=12% Similarity=0.123 Sum_probs=112.5
Q ss_pred HHHHHHHHHhhcCCeEEEEcCchhh--hhcccCCccHHHHHHHHHHHHhcCC-----CCEEEEecccCCCCCcccccccc
Q 001735 473 AMEALCEVLHSTQPLIVYFPDSSLW--LSRAVPRCNRKEFVRKVEEMFDQLS-----GPVVLICGQNKNETGPKEKEKFT 545 (1019)
Q Consensus 473 ~i~~L~e~~~~~~p~Iiff~eid~~--~~~~~~~~~~~~~~s~~~~~l~~l~-----g~v~vI~~~~~~d~~~~~~~~~~ 545 (1019)
.+..|||-|+.....||||||||.+ .|=-..-.--++.-.+.++++..|+ |++-|+
T Consensus 258 mvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvl----------------- 320 (435)
T KOG0729|consen 258 MVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVL----------------- 320 (435)
T ss_pred HHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEE-----------------
Confidence 7889999999999999999999987 2211111112355556666666665 444443
Q ss_pred ccccccccccCCCCchhhhhcccccCCCcchHHHHh--cccceEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001735 546 MILPNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHK 623 (1019)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~r--rFe~~~eI~LPdee~Rl~Il~Iht~k~~~~~~~~~~v~~l~~ 623 (1019)
=+|||||-+|+||+| |+++.+||.|||-|||.+||+||++.|.- ..+.-.+.|+.
T Consensus 321 ---------------------matnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsv--erdir~ellar 377 (435)
T KOG0729|consen 321 ---------------------MATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSV--ERDIRFELLAR 377 (435)
T ss_pred ---------------------eecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEecccccc--ccchhHHHHHh
Confidence 368888889999998 99999999999999999999999655531 11122445555
Q ss_pred HHhhccCCccccccccccchhhhHHhhhhHHhhhcccccccCCCCCccCCceeecHHHHHHHHHHhhhh
Q 001735 624 VLEDHELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQ 692 (1019)
Q Consensus 624 ~l~t~~~~gaDL~~Lct~~~~~s~~~~~~~V~~A~s~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~ 692 (1019)
.-.|-.||||+.+||++-.+++..-. -..+-+||..|++++...
T Consensus 378 --lcpnstgaeirsvcteagmfairarr-----------------------k~atekdfl~av~kvvkg 421 (435)
T KOG0729|consen 378 --LCPNSTGAEIRSVCTEAGMFAIRARR-----------------------KVATEKDFLDAVNKVVKG 421 (435)
T ss_pred --hCCCCcchHHHHHHHHhhHHHHHHHh-----------------------hhhhHHHHHHHHHHHHHH
Confidence 56788899999999998877744311 124668999999998764
No 72
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.9e-17 Score=175.18 Aligned_cols=159 Identities=11% Similarity=0.150 Sum_probs=108.6
Q ss_pred HHHHHHHHHhhcCCeEEEEcCchhhhhccc--CCccHHHHHHHHHHHHhcCCCCEEEEecccCCCCCccccccccccccc
Q 001735 473 AMEALCEVLHSTQPLIVYFPDSSLWLSRAV--PRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPN 550 (1019)
Q Consensus 473 ~i~~L~e~~~~~~p~Iiff~eid~~~~~~~--~~~~~~~~~s~~~~~l~~l~g~v~vI~~~~~~d~~~~~~~~~~~~~~~ 550 (1019)
.+..+|..|+.+.|+|||+||||.++...- |-+--.+.-..|.++|..|+|=-+
T Consensus 236 mvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq------------------------ 291 (408)
T KOG0727|consen 236 MVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQ------------------------ 291 (408)
T ss_pred HHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCc------------------------
Confidence 677889999999999999999999953311 111112334456666777765110
Q ss_pred cccccCCCCchhhhhcccccCCCcchHHHHh--cccceEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhc
Q 001735 551 FGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLEDH 628 (1019)
Q Consensus 551 ~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~r--rFe~~~eI~LPdee~Rl~Il~Iht~k~~~~~~~~~~v~~l~~~l~t~ 628 (1019)
+.|.-||=+|||.|-+|+||+| |++++|||||||--.++-+|..-|.+|.- .++++.-..+.+--
T Consensus 292 ---------~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~l----s~~vdle~~v~rpd 358 (408)
T KOG0727|consen 292 ---------TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNL----SDEVDLEDLVARPD 358 (408)
T ss_pred ---------ccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccC----CcccCHHHHhcCcc
Confidence 0111244568888889999998 99999999999999888899888766642 22333223344555
Q ss_pred cCCccccccccccchhhhHHhhhhHHhhhcccccccCCCCCccCCceeecHHHHHHHHHHhhh
Q 001735 629 ELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKE 691 (1019)
Q Consensus 629 ~~~gaDL~~Lct~~~~~s~~~~~~~V~~A~s~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p 691 (1019)
.++|||+.++|.++-+.. +..++..|..+||+.|......
T Consensus 359 kis~adi~aicqeagm~a-----------------------vr~nryvvl~kd~e~ay~~~vk 398 (408)
T KOG0727|consen 359 KISGADINAICQEAGMLA-----------------------VRENRYVVLQKDFEKAYKTVVK 398 (408)
T ss_pred ccchhhHHHHHHHHhHHH-----------------------HHhcceeeeHHHHHHHHHhhcC
Confidence 679999999996655444 2234566788999999876543
No 73
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.72 E-value=1.4e-17 Score=190.09 Aligned_cols=152 Identities=13% Similarity=0.201 Sum_probs=107.2
Q ss_pred HHHHHHHHHhhcCCeEEEEcCchhhhhccc--CCc---cHHHHHHHHHHHHhcCC--CCEEEEecccCCCCCcccccccc
Q 001735 473 AMEALCEVLHSTQPLIVYFPDSSLWLSRAV--PRC---NRKEFVRKVEEMFDQLS--GPVVLICGQNKNETGPKEKEKFT 545 (1019)
Q Consensus 473 ~i~~L~e~~~~~~p~Iiff~eid~~~~~~~--~~~---~~~~~~s~~~~~l~~l~--g~v~vI~~~~~~d~~~~~~~~~~ 545 (1019)
.+..+|+.++..+|.||||||+|.+..... ..+ ...+.+..+...|++++ ++|.||
T Consensus 203 ~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI----------------- 265 (364)
T TIGR01242 203 LVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVI----------------- 265 (364)
T ss_pred HHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEE-----------------
Confidence 566788889889999999999999964321 111 11122333333344442 355555
Q ss_pred ccccccccccCCCCchhhhhcccccCCCcchHHHHh--cccceEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001735 546 MILPNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHK 623 (1019)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~r--rFe~~~eI~LPdee~Rl~Il~Iht~k~~~~~~~~~~v~~l~~ 623 (1019)
++||+++.+|++|+| ||++.++|++|+.++|.+||++|+.++.. ..+.+++.++.
T Consensus 266 ---------------------~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l--~~~~~~~~la~ 322 (364)
T TIGR01242 266 ---------------------AATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKL--AEDVDLEAIAK 322 (364)
T ss_pred ---------------------EecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCC--CccCCHHHHHH
Confidence 667777789999998 99999999999999999999999755431 12245666666
Q ss_pred HHhhccCCccccccccccchhhhHHhhhhHHhhhcccccccCCCCCccCCceeecHHHHHHHHHHh
Q 001735 624 VLEDHELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRL 689 (1019)
Q Consensus 624 ~l~t~~~~gaDL~~Lct~~~~~s~~~~~~~V~~A~s~~l~~~~~~~v~~~kv~V~~~df~~Al~~l 689 (1019)
.+.||+|+||.++|.++...+..+ ++-.|+.+||..|+.++
T Consensus 323 --~t~g~sg~dl~~l~~~A~~~a~~~-----------------------~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 323 --MTEGASGADLKAICTEAGMFAIRE-----------------------ERDYVTMDDFIKAVEKV 363 (364)
T ss_pred --HcCCCCHHHHHHHHHHHHHHHHHh-----------------------CCCccCHHHHHHHHHHh
Confidence 778999999999987766554221 12358899999998765
No 74
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.72 E-value=1.7e-17 Score=201.93 Aligned_cols=157 Identities=10% Similarity=0.118 Sum_probs=115.3
Q ss_pred HHHHHHHHHhhcCCeEEEEcCchhhhhcccC-----CccHHHHHHHHHHHHhcCCCCEEEEecccCCCCCcccccccccc
Q 001735 473 AMEALCEVLHSTQPLIVYFPDSSLWLSRAVP-----RCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMI 547 (1019)
Q Consensus 473 ~i~~L~e~~~~~~p~Iiff~eid~~~~~~~~-----~~~~~~~~s~~~~~l~~l~g~v~vI~~~~~~d~~~~~~~~~~~~ 547 (1019)
.+..+|+.++..+|.||||||||.+.++... ...++++++.|+..||++.++-
T Consensus 232 ~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~---------------------- 289 (644)
T PRK10733 232 RVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE---------------------- 289 (644)
T ss_pred HHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCC----------------------
Confidence 4567888899999999999999999654221 1234456666666666654320
Q ss_pred ccccccccCCCCchhhhhcccccCCCcchHHHHh--cccceEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q 001735 548 LPNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVL 625 (1019)
Q Consensus 548 ~~~~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~r--rFe~~~eI~LPdee~Rl~Il~Iht~k~~~~~~~~~~v~~l~~~l 625 (1019)
.+++||+||+++.||+||+| ||+++++|++||.++|.+||+.|+.+.. ...+.++..++.
T Consensus 290 --------------~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~--l~~~~d~~~la~-- 351 (644)
T PRK10733 290 --------------GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP--LAPDIDAAIIAR-- 351 (644)
T ss_pred --------------CeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCC--CCCcCCHHHHHh--
Confidence 12355888889999999998 9999999999999999999999975532 123344555655
Q ss_pred hhccCCccccccccccchhhhHHhhhhHHhhhcccccccCCCCCccCCceeecHHHHHHHHHHhhhh
Q 001735 626 EDHELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQ 692 (1019)
Q Consensus 626 ~t~~~~gaDL~~Lct~~~~~s~~~~~~~V~~A~s~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~ 692 (1019)
.+.||+||||..||.++++.+.. .++-.|+..+|..|+.++.+.
T Consensus 352 ~t~G~sgadl~~l~~eAa~~a~r-----------------------~~~~~i~~~d~~~a~~~v~~g 395 (644)
T PRK10733 352 GTPGFSGADLANLVNEAALFAAR-----------------------GNKRVVSMVEFEKAKDKIMMG 395 (644)
T ss_pred hCCCCCHHHHHHHHHHHHHHHHH-----------------------cCCCcccHHHHHHHHHHHhcc
Confidence 78899999999999777665521 122357889999999887653
No 75
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=8.8e-17 Score=182.91 Aligned_cols=219 Identities=21% Similarity=0.301 Sum_probs=170.4
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhh
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWF 806 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s~~~ 806 (1019)
.+|+.++--.+.|+.|.+-+...+...+.|.+.| ....+|.|||||||||||+++.|+|+++++.++.+..+++...
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvG-kawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n-- 274 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVG-KAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLD-- 274 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcC-cchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCc--
Confidence 7899999999999999999999999999999988 5678999999999999999999999999999999988776543
Q ss_pred hhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCch-----h-HHHHHHHHHHHhhhccccccCCCcEEEEEecCCC
Q 001735 807 GDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFE-----H-EATRRMRNEFMSAWDGLRSKESQKILILGATNRP 880 (1019)
Q Consensus 807 Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~-----~-e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p 880 (1019)
.+ ++.+...+ ...+||+|.|||.-+.-+..... + ...+-.+..||+.+||+-+..++--+||.|||..
T Consensus 275 --~d--Lr~LL~~t--~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~ 348 (457)
T KOG0743|consen 275 --SD--LRHLLLAT--PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHK 348 (457)
T ss_pred --HH--HHHHHHhC--CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCCh
Confidence 22 55555543 24589999999987643322111 1 1233567889999999987776678899999999
Q ss_pred CCCcHHHHh--hCCCCcccCCCCHHHHHHHHHHHHhccCCCCccCHHHHHHHhcC--CCHHHHHHHHHH---HHHHHHHH
Q 001735 881 FDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEG--YSGSDLKNLCIA---AAYRPVQE 953 (1019)
Q Consensus 881 ~~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeG--~SgaDL~~L~~~---Aa~~Airr 953 (1019)
+.|||||+| |.|..|+++..+.+.-..+++.++.... +..-+.+|.+..++ .|++|+...+-. .+..++++
T Consensus 349 EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~lk~ 426 (457)
T KOG0743|consen 349 EKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEELMKNKNDADVALKG 426 (457)
T ss_pred hhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHHHhhccccHHHHHHH
Confidence 999999999 9999999999999999999999987533 12234555555544 589998865432 24455555
Q ss_pred HHH
Q 001735 954 LLE 956 (1019)
Q Consensus 954 ~l~ 956 (1019)
+++
T Consensus 427 Lv~ 429 (457)
T KOG0743|consen 427 LVE 429 (457)
T ss_pred HHH
Confidence 443
No 76
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.72 E-value=1.4e-15 Score=190.11 Aligned_cols=203 Identities=20% Similarity=0.209 Sum_probs=134.9
Q ss_pred cccChHHHHHHHHHHHHcccCCchhhccCCC---CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchh
Q 001735 731 DIGALEDVKKALNELVILPMRRPDLFSRGNL---LRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSK 804 (1019)
Q Consensus 731 DIgGle~vk~~L~e~V~~pL~~pelf~~~gl---~~p~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~s~ 804 (1019)
.|.|++..++.+.+.+.... .++ .+|...+||+||+|+|||+||+++|..+ ...++.++++++...
T Consensus 567 ~v~GQ~~Av~~v~~~i~~~~--------~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~ 638 (852)
T TIGR03345 567 RVIGQDHALEAIAERIRTAR--------AGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEA 638 (852)
T ss_pred eEcChHHHHHHHHHHHHHHh--------cCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhh
Confidence 57899999999988885421 111 1233358999999999999999999998 457889998765322
Q ss_pred ------------hhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcccccc------
Q 001735 805 ------------WFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSK------ 866 (1019)
Q Consensus 805 ------------~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~------ 866 (1019)
|+|..+. ..+....++.+.+||+|||||..- ..+.+.|++.++.-.-.
T Consensus 639 ~~~~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka~------------~~v~~~Llq~ld~g~l~d~~Gr~ 704 (852)
T TIGR03345 639 HTVSRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKAH------------PDVLELFYQVFDKGVMEDGEGRE 704 (852)
T ss_pred hhhccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhcC------------HHHHHHHHHHhhcceeecCCCcE
Confidence 2222111 123344466788999999998652 23455666666533211
Q ss_pred -CCCcEEEEEecCCCC-----------------------------CCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhcc
Q 001735 867 -ESQKILILGATNRPF-----------------------------DLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHE 916 (1019)
Q Consensus 867 -~~~~VLVIaTTN~p~-----------------------------~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~ 916 (1019)
.-.+.+||.|||... .+.|++++|++ .+.|.+.+.++..+|+...+...
T Consensus 705 vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~l 783 (852)
T TIGR03345 705 IDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDRI 783 (852)
T ss_pred EeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHHHHHHHHHHHHHHH
Confidence 124678888988421 14467778886 78889999999999998877542
Q ss_pred --------CCC---CccCHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHHH
Q 001735 917 --------SLE---SGFQFNELANATEG--YSGSDLKNLCIAAAYRPVQELLE 956 (1019)
Q Consensus 917 --------~l~---~dvdl~~LA~~TeG--~SgaDL~~L~~~Aa~~Airr~l~ 956 (1019)
++. ++..+..|+....+ |-.+.|+++++.-...++.+.+-
T Consensus 784 ~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~~~l 836 (852)
T TIGR03345 784 ARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQIL 836 (852)
T ss_pred HHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 221 22224556665533 45789999998887777776543
No 77
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.9e-17 Score=179.75 Aligned_cols=155 Identities=15% Similarity=0.170 Sum_probs=117.2
Q ss_pred HHHHHHHHHhhcCCeEEEEcCchhhhhccc--CCccHHHHHHHHHHHHhcCC-----CCEEEEecccCCCCCcccccccc
Q 001735 473 AMEALCEVLHSTQPLIVYFPDSSLWLSRAV--PRCNRKEFVRKVEEMFDQLS-----GPVVLICGQNKNETGPKEKEKFT 545 (1019)
Q Consensus 473 ~i~~L~e~~~~~~p~Iiff~eid~~~~~~~--~~~~~~~~~s~~~~~l~~l~-----g~v~vI~~~~~~d~~~~~~~~~~ 545 (1019)
+|..-|..|+.++|.|||+||||-...+-. .-+.-..|..||-+++++|+ |+|=+|+++|+
T Consensus 213 lIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNr------------ 280 (388)
T KOG0651|consen 213 LIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNR------------ 280 (388)
T ss_pred HHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCC------------
Confidence 888999999999999999999998844322 22333566788888888887 67777766555
Q ss_pred ccccccccccCCCCchhhhhcccccCCCcchHHHHh--cccceEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001735 546 MILPNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHK 623 (1019)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~r--rFe~~~eI~LPdee~Rl~Il~Iht~k~~~~~~~~~~v~~l~~ 623 (1019)
||-+|+||+| |.|+.++||+|++-+|+.|++||..........+ -+.+-+
T Consensus 281 --------------------------pdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid--~eaivK 332 (388)
T KOG0651|consen 281 --------------------------PDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEID--DEAILK 332 (388)
T ss_pred --------------------------ccccchhhcCCccccceeccCCcchhhceeeEeecccccccccccc--HHHHHH
Confidence 5557777777 9999999999999999999999977666555554 223333
Q ss_pred HHhhccCCccccccccccchhhhHHhhhhHHhhhcccccccCCCCCccCCceeecHHHHHHHHHHhhhh
Q 001735 624 VLEDHELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQ 692 (1019)
Q Consensus 624 ~l~t~~~~gaDL~~Lct~~~~~s~~~~~~~V~~A~s~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~ 692 (1019)
..-+|.|+|++..||++-.++.. .++..+-.+|||.++.++...
T Consensus 333 --~~d~f~gad~rn~~tEag~Fa~~-----------------------~~~~~vl~Ed~~k~vrk~~~~ 376 (388)
T KOG0651|consen 333 --LVDGFNGADLRNVCTEAGMFAIP-----------------------EERDEVLHEDFMKLVRKQADA 376 (388)
T ss_pred --HHhccChHHHhhhcccccccccc-----------------------hhhHHHhHHHHHHHHHHHHHH
Confidence 45578899999999998766621 234456679999998876543
No 78
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.70 E-value=3e-15 Score=187.22 Aligned_cols=209 Identities=20% Similarity=0.212 Sum_probs=137.4
Q ss_pred cccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchh---
Q 001735 731 DIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSK--- 804 (1019)
Q Consensus 731 DIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~s~--- 804 (1019)
.|.|++.+++.+...+...... + ....+|...+||+||+|+|||+||+++|+.+ +.+++.++++++...
T Consensus 510 ~v~GQ~~ai~~l~~~i~~~~~g---l--~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~ 584 (821)
T CHL00095 510 RIIGQDEAVVAVSKAIRRARVG---L--KNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTV 584 (821)
T ss_pred cCcChHHHHHHHHHHHHHHhhc---c--cCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccH
Confidence 5789999999998887542110 0 0112344568999999999999999999987 468999998876432
Q ss_pred --hhhhHHH-----HHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcccc-------ccCCCc
Q 001735 805 --WFGDAEK-----LTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR-------SKESQK 870 (1019)
Q Consensus 805 --~~Ge~e~-----~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~-------~~~~~~ 870 (1019)
..|.... ....+....+..+.+||+|||||.+- ..+.+.|++.++.-. .....+
T Consensus 585 ~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~------------~~v~~~Llq~le~g~~~d~~g~~v~~~~ 652 (821)
T CHL00095 585 SKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAH------------PDIFNLLLQILDDGRLTDSKGRTIDFKN 652 (821)
T ss_pred HHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCC------------HHHHHHHHHHhccCceecCCCcEEecCc
Confidence 1111100 11234555566667999999999862 335667777776421 112346
Q ss_pred EEEEEecCCCCC-------------------------------------CcHHHHhhCCCCcccCCCCHHHHHHHHHHHH
Q 001735 871 ILILGATNRPFD-------------------------------------LDDAVIRRLPRRIYVDLPDAENRMKILRIFL 913 (1019)
Q Consensus 871 VLVIaTTN~p~~-------------------------------------LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L 913 (1019)
.+||.|||.... +.|+++.|++.++.|.+.+.++..+|+...+
T Consensus 653 ~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l 732 (821)
T CHL00095 653 TLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIML 732 (821)
T ss_pred eEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHH
Confidence 889999874311 2356788999999999999999999988877
Q ss_pred hcc-------CCC---CccCHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHH
Q 001735 914 AHE-------SLE---SGFQFNELANAT--EGYSGSDLKNLCIAAAYRPVQELLE 956 (1019)
Q Consensus 914 ~~~-------~l~---~dvdl~~LA~~T--eG~SgaDL~~L~~~Aa~~Airr~l~ 956 (1019)
... ++. ++.....|+... ..|-.+.|+.+++.-...++.+.+-
T Consensus 733 ~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~~~~l 787 (821)
T CHL00095 733 KNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAEEVL 787 (821)
T ss_pred HHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHH
Confidence 632 111 112245566542 2445688888888877777766543
No 79
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.68 E-value=5e-15 Score=185.78 Aligned_cols=207 Identities=21% Similarity=0.257 Sum_probs=138.5
Q ss_pred ccccChHHHHHHHHHHHHcccCCchhhccCCC---CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccch
Q 001735 730 DDIGALEDVKKALNELVILPMRRPDLFSRGNL---LRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTS 803 (1019)
Q Consensus 730 dDIgGle~vk~~L~e~V~~pL~~pelf~~~gl---~~p~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~s 803 (1019)
..|.|++.+++.+...+.... .++ .+|...+||+||+|||||++|+++|..+ +.+++.++++++..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~--------~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~ 636 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSR--------AGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYME 636 (852)
T ss_pred cccCCChHHHHHHHHHHHHHh--------ccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcc
Confidence 358899999999988875421 111 2345679999999999999999999987 56899999987643
Q ss_pred hh-----hhhHHH-----HHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcccc--c-----c
Q 001735 804 KW-----FGDAEK-----LTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR--S-----K 866 (1019)
Q Consensus 804 ~~-----~Ge~e~-----~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~--~-----~ 866 (1019)
.. .|.... ....+....++.+.+|||||||+.+- ..+.+.|++.|+.-. . .
T Consensus 637 ~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~------------~~v~~~Ll~~l~~g~l~d~~g~~v 704 (852)
T TIGR03346 637 KHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAH------------PDVFNVLLQVLDDGRLTDGQGRTV 704 (852)
T ss_pred cchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCC------------HHHHHHHHHHHhcCceecCCCeEE
Confidence 21 111000 01223344456667899999999762 234556666664321 0 1
Q ss_pred CCCcEEEEEecCCCCC-------------------------CcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhc------
Q 001735 867 ESQKILILGATNRPFD-------------------------LDDAVIRRLPRRIYVDLPDAENRMKILRIFLAH------ 915 (1019)
Q Consensus 867 ~~~~VLVIaTTN~p~~-------------------------LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~------ 915 (1019)
.-.+.+||+|||.... +.|+|+.|++.++.+.+++.+...+|+...+..
T Consensus 705 d~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~ 784 (852)
T TIGR03346 705 DFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLA 784 (852)
T ss_pred ecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 1246778899987321 335677799999999999999999998877652
Q ss_pred -cCCC---CccCHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHH
Q 001735 916 -ESLE---SGFQFNELANATE--GYSGSDLKNLCIAAAYRPVQELLE 956 (1019)
Q Consensus 916 -~~l~---~dvdl~~LA~~Te--G~SgaDL~~L~~~Aa~~Airr~l~ 956 (1019)
.++. ++..+..|+...- .+..+.|+++++.....++.+.+-
T Consensus 785 ~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~~l 831 (852)
T TIGR03346 785 ERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKKIL 831 (852)
T ss_pred HCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 1111 2222455665422 456799999999998888877554
No 80
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.68 E-value=2.6e-16 Score=176.69 Aligned_cols=122 Identities=11% Similarity=0.032 Sum_probs=82.7
Q ss_pred HHHHHHHHHhh-----cCCeEEEEcCchhhhhccc--CCccHHHHH-HHHHHHHhcCCCCEEEEecccCCCCCccccccc
Q 001735 473 AMEALCEVLHS-----TQPLIVYFPDSSLWLSRAV--PRCNRKEFV-RKVEEMFDQLSGPVVLICGQNKNETGPKEKEKF 544 (1019)
Q Consensus 473 ~i~~L~e~~~~-----~~p~Iiff~eid~~~~~~~--~~~~~~~~~-s~~~~~l~~l~g~v~vI~~~~~~d~~~~~~~~~ 544 (1019)
+|..+|++|.. .+|+||||||||.++.+.. +.....+++ .+|.++||.+. .|.+.|.-+..+ ..
T Consensus 195 ~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~-~v~l~G~w~~~~---~~---- 266 (413)
T PLN00020 195 LIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPT-NVSLGGDWREKE---EI---- 266 (413)
T ss_pred HHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCc-cccccccccccc---cC----
Confidence 77888888864 4899999999999975432 222334564 55555544322 244432111111 00
Q ss_pred cccccccccccCCCCchhhhhcccccCCCcchHHHHh--cccceEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Q 001735 545 TMILPNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELH 622 (1019)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~r--rFe~~~eI~LPdee~Rl~Il~Iht~k~~~~~~~~~~v~~l~ 622 (1019)
-...||++||||+.||+||+| |||..+ .+|+.++|.+||++|++++ .....++..|.
T Consensus 267 ----------------~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~---~l~~~dv~~Lv 325 (413)
T PLN00020 267 ----------------PRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDD---GVSREDVVKLV 325 (413)
T ss_pred ----------------CCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccC---CCCHHHHHHHH
Confidence 024689999999999999999 999964 6999999999999997653 44556666665
Q ss_pred H
Q 001735 623 K 623 (1019)
Q Consensus 623 ~ 623 (1019)
.
T Consensus 326 ~ 326 (413)
T PLN00020 326 D 326 (413)
T ss_pred H
Confidence 5
No 81
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.66 E-value=4.6e-14 Score=176.83 Aligned_cols=206 Identities=20% Similarity=0.268 Sum_probs=132.6
Q ss_pred cccccChHHHHHHHHHHHHcccCCchhhccCCCC---CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc
Q 001735 729 FDDIGALEDVKKALNELVILPMRRPDLFSRGNLL---RPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLT 802 (1019)
Q Consensus 729 fdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~---~p~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~ 802 (1019)
...|.|++.+++.+...+... +.++. +|...+||+||+|||||++|++||..+ +.+++.++++++.
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~ 638 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRS--------RAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFM 638 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHH--------HhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhh
Confidence 446889999999998888542 11111 233468999999999999999999987 5679999988764
Q ss_pred hhh-----hhhHHH-----HHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcccc-------c
Q 001735 803 SKW-----FGDAEK-----LTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR-------S 865 (1019)
Q Consensus 803 s~~-----~Ge~e~-----~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~-------~ 865 (1019)
... +|.... .-..+....+..+.+|||||||+.+- ..+.+.|+..++.-. .
T Consensus 639 ~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~------------~~v~~~Ll~ile~g~l~d~~gr~ 706 (857)
T PRK10865 639 EKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAH------------PDVFNILLQVLDDGRLTDGQGRT 706 (857)
T ss_pred hhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCC------------HHHHHHHHHHHhhCceecCCceE
Confidence 321 111000 00112223344455899999999762 223455665554211 0
Q ss_pred cCCCcEEEEEecCCCC-------------------------CCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhcc----
Q 001735 866 KESQKILILGATNRPF-------------------------DLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHE---- 916 (1019)
Q Consensus 866 ~~~~~VLVIaTTN~p~-------------------------~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~---- 916 (1019)
..-.+.+||+|||... .+.|+++.|++..+.+.+++.+...+|++.++...
T Consensus 707 vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl 786 (857)
T PRK10865 707 VDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRL 786 (857)
T ss_pred EeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1223567888988631 24568889999999999999999999988877642
Q ss_pred ---CCCCccC---HHHHHHHhcCCC----HHHHHHHHHHHHHHHHHHHHH
Q 001735 917 ---SLESGFQ---FNELANATEGYS----GSDLKNLCIAAAYRPVQELLE 956 (1019)
Q Consensus 917 ---~l~~dvd---l~~LA~~TeG~S----gaDL~~L~~~Aa~~Airr~l~ 956 (1019)
++.-.++ +..|+. .||+ .+.|+.+++.-...++.+.+-
T Consensus 787 ~~~gi~l~is~~al~~L~~--~gy~~~~GARpL~r~I~~~i~~~la~~iL 834 (857)
T PRK10865 787 EERGYEIHISDEALKLLSE--NGYDPVYGARPLKRAIQQQIENPLAQQIL 834 (857)
T ss_pred HhCCCcCcCCHHHHHHHHH--cCCCccCChHHHHHHHHHHHHHHHHHHHH
Confidence 2222233 333443 2444 578888888887777766543
No 82
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.66 E-value=6.7e-16 Score=163.82 Aligned_cols=188 Identities=25% Similarity=0.337 Sum_probs=119.7
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhh
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWF 806 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s~~~ 806 (1019)
.+|+|++|+++++..+.-++.....+ ..+..++|||||||+|||+||..||++++.+|..++++.+.. .
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~~r---------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k--~ 89 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAKKR---------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK--A 89 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHHCT---------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S--C
T ss_pred CCHHHccCcHHHHhhhHHHHHHHHhc---------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh--H
Confidence 47999999999999988777543221 134468999999999999999999999999999988865422 1
Q ss_pred hhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccc-----c---------CCCcEE
Q 001735 807 GDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRS-----K---------ESQKIL 872 (1019)
Q Consensus 807 Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~-----~---------~~~~VL 872 (1019)
++. ..++... ....|||||||++|... ....|+..|+...- . +-.++.
T Consensus 90 ~dl----~~il~~l--~~~~ILFIDEIHRlnk~------------~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FT 151 (233)
T PF05496_consen 90 GDL----AAILTNL--KEGDILFIDEIHRLNKA------------QQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFT 151 (233)
T ss_dssp HHH----HHHHHT----TT-EEEECTCCC--HH------------HHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----E
T ss_pred HHH----HHHHHhc--CCCcEEEEechhhccHH------------HHHHHHHHhccCeEEEEeccccccceeeccCCCce
Confidence 222 2233322 24689999999998422 22233333332110 0 113578
Q ss_pred EEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCC-CccCHHHHHHHhcCCCHHHHHHHHH
Q 001735 873 ILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLKNLCI 944 (1019)
Q Consensus 873 VIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeG~SgaDL~~L~~ 944 (1019)
+||||++...|...+++||.....+...+.++..+|++......++. ++....+||..+.| +++-..++++
T Consensus 152 ligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~ 223 (233)
T PF05496_consen 152 LIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLR 223 (233)
T ss_dssp EEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHH
T ss_pred EeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHH
Confidence 99999999999999999998888899999999999998766655543 23346788999988 6665555554
No 83
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.65 E-value=1.5e-15 Score=187.68 Aligned_cols=224 Identities=25% Similarity=0.305 Sum_probs=158.0
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA----------GANFISI 796 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~el----------g~~fi~I 796 (1019)
-.+++++|.++.+..+.+.+.. +...++||+||||||||++|+++|+.+ +..++.+
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~~--------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~ 244 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLCR--------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL 244 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHhc--------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe
Confidence 3578899999988877665522 123579999999999999999999987 6789999
Q ss_pred eccccc--hhhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEE
Q 001735 797 TGSTLT--SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILIL 874 (1019)
Q Consensus 797 s~seL~--s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVI 874 (1019)
++..+. ..|.|+.+..++.+|..+.+..++||||||||.|.+......... ...+.|...+ ....+.+|
T Consensus 245 ~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~---~~~~~L~~~l------~~g~i~~I 315 (731)
T TIGR02639 245 DMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSM---DASNLLKPAL------SSGKLRCI 315 (731)
T ss_pred cHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccH---HHHHHHHHHH------hCCCeEEE
Confidence 988887 468899999999999999888899999999999987643221111 1122222222 23468899
Q ss_pred EecCCC-----CCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccC----C-CCccCHHHHHHHhcCCCHH-----HH
Q 001735 875 GATNRP-----FDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHES----L-ESGFQFNELANATEGYSGS-----DL 939 (1019)
Q Consensus 875 aTTN~p-----~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~----l-~~dvdl~~LA~~TeG~Sga-----DL 939 (1019)
|+||.. ...|+++.|||. .|.|+.|+.+++.+||+.+..... + ..+..+..++..+..|-+. .-
T Consensus 316 gaTt~~e~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~ka 394 (731)
T TIGR02639 316 GSTTYEEYKNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKA 394 (731)
T ss_pred EecCHHHHHHHhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHH
Confidence 999863 458999999995 799999999999999997765421 1 1334466677777665432 22
Q ss_pred HHHHHHHHHH-HHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHHhhC
Q 001735 940 KNLCIAAAYR-PVQELLEEERKRGKNDAAPVLRPLKLEDFIQSKAKVG 986 (1019)
Q Consensus 940 ~~L~~~Aa~~-Airr~l~~~~~~~~~~~~~~~~pLT~eDF~~Al~kv~ 986 (1019)
..++.+|+.. .++. .......|+.+|+..++..+.
T Consensus 395 i~lld~a~a~~~~~~------------~~~~~~~v~~~~i~~~i~~~t 430 (731)
T TIGR02639 395 IDVIDEAGASFRLRP------------KAKKKANVSVKDIENVVAKMA 430 (731)
T ss_pred HHHHHHhhhhhhcCc------------ccccccccCHHHHHHHHHHHh
Confidence 3444444321 1110 000124589999999988874
No 84
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.65 E-value=5.3e-15 Score=164.18 Aligned_cols=220 Identities=20% Similarity=0.203 Sum_probs=143.9
Q ss_pred ccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhhh
Q 001735 728 RFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFG 807 (1019)
Q Consensus 728 tfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s~~~G 807 (1019)
+|++++|++++++.|..++...... ..++.+++|+||||||||+||+++|++++.++..+.++.+.. .+
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~---------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~--~~ 70 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR---------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK--PG 70 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc---------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC--ch
Confidence 6899999999999999887542211 123467999999999999999999999998877765543321 11
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHh--hhcc-cc----ccCCCcEEEEEecCCC
Q 001735 808 DAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS--AWDG-LR----SKESQKILILGATNRP 880 (1019)
Q Consensus 808 e~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~--~Ldg-l~----~~~~~~VLVIaTTN~p 880 (1019)
.+...+... ..+.|||||||+.+.... .+....+++..-. .++. .. .....++.+|++||.+
T Consensus 71 ----~l~~~l~~~--~~~~vl~iDEi~~l~~~~-----~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~ 139 (305)
T TIGR00635 71 ----DLAAILTNL--EEGDVLFIDEIHRLSPAV-----EELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRA 139 (305)
T ss_pred ----hHHHHHHhc--ccCCEEEEehHhhhCHHH-----HHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCc
Confidence 112222221 346899999999985321 1111111111100 0000 00 0012247899999999
Q ss_pred CCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCC-CccCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 001735 881 FDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEER 959 (1019)
Q Consensus 881 ~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeG~SgaDL~~L~~~Aa~~Airr~l~~~~ 959 (1019)
..+++++++||...+.++.|+.+++.++++..+....+. ++..+..|+..+.|+. +.+..++..+...|...
T Consensus 140 ~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~~~a~~~------ 212 (305)
T TIGR00635 140 GMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVRDFAQVR------ 212 (305)
T ss_pred cccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHHHc------
Confidence 999999999998888999999999999999888755443 3334678899888855 66677777654332211
Q ss_pred hcCCCCCCCCccCCCHHHHHHHHHhh
Q 001735 960 KRGKNDAAPVLRPLKLEDFIQSKAKV 985 (1019)
Q Consensus 960 ~~~~~~~~~~~~pLT~eDF~~Al~kv 985 (1019)
....++.+++..++..+
T Consensus 213 ---------~~~~it~~~v~~~l~~l 229 (305)
T TIGR00635 213 ---------GQKIINRDIALKALEML 229 (305)
T ss_pred ---------CCCCcCHHHHHHHHHHh
Confidence 01346777777777664
No 85
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.65 E-value=1.3e-14 Score=163.50 Aligned_cols=225 Identities=20% Similarity=0.178 Sum_probs=151.8
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhh
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWF 806 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s~~~ 806 (1019)
.+|++++|.++.++.+..++...... ..++.++||+||||||||++|+++|++++..+..++.+.+..
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~~---------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~--- 89 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKKR---------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK--- 89 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHhc---------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC---
Confidence 47999999999999998887542111 134578999999999999999999999999888776654321
Q ss_pred hhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHh--hhccccc-----cCCCcEEEEEecCC
Q 001735 807 GDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS--AWDGLRS-----KESQKILILGATNR 879 (1019)
Q Consensus 807 Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~--~Ldgl~~-----~~~~~VLVIaTTN~ 879 (1019)
...+..++... ..++||||||||.+.... .+.....+..... .++.-.. ..-.++.+|++|++
T Consensus 90 ---~~~l~~~l~~l--~~~~vl~IDEi~~l~~~~-----~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~ 159 (328)
T PRK00080 90 ---PGDLAAILTNL--EEGDVLFIDEIHRLSPVV-----EEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTR 159 (328)
T ss_pred ---hHHHHHHHHhc--ccCCEEEEecHhhcchHH-----HHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCC
Confidence 12233333332 357899999999984321 1111111111100 0111000 01124788999999
Q ss_pred CCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCC-CccCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 001735 880 PFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEE 958 (1019)
Q Consensus 880 p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeG~SgaDL~~L~~~Aa~~Airr~l~~~ 958 (1019)
+..+++++++||...+.++.|+.+++.+|++..+....+. ++..+..|+..+.|. ++.+..++..+...+..+
T Consensus 160 ~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~-pR~a~~~l~~~~~~a~~~----- 233 (328)
T PRK00080 160 AGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGT-PRIANRLLRRVRDFAQVK----- 233 (328)
T ss_pred cccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCC-chHHHHHHHHHHHHHHHc-----
Confidence 9999999999998889999999999999999888766554 333478889888884 477777776654443321
Q ss_pred HhcCCCCCCCCccCCCHHHHHHHHHhhCCCc
Q 001735 959 RKRGKNDAAPVLRPLKLEDFIQSKAKVGPSV 989 (1019)
Q Consensus 959 ~~~~~~~~~~~~~pLT~eDF~~Al~kv~PS~ 989 (1019)
....|+.+++..++..+....
T Consensus 234 ----------~~~~I~~~~v~~~l~~~~~~~ 254 (328)
T PRK00080 234 ----------GDGVITKEIADKALDMLGVDE 254 (328)
T ss_pred ----------CCCCCCHHHHHHHHHHhCCCc
Confidence 114578888888887765443
No 86
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.64 E-value=3.7e-15 Score=167.46 Aligned_cols=167 Identities=27% Similarity=0.414 Sum_probs=123.0
Q ss_pred cccccccChHHHHH---HHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch
Q 001735 727 VRFDDIGALEDVKK---ALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS 803 (1019)
Q Consensus 727 vtfdDIgGle~vk~---~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s 803 (1019)
.+++|++|++.... .|..+|.. ....+++||||||||||+||+.||...+.+|..+++..
T Consensus 21 ~~lde~vGQ~HLlg~~~~lrr~v~~--------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~--- 83 (436)
T COG2256 21 KSLDEVVGQEHLLGEGKPLRRAVEA--------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT--- 83 (436)
T ss_pred CCHHHhcChHhhhCCCchHHHHHhc--------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc---
Confidence 46889999988763 45555422 22367999999999999999999999999999998744
Q ss_pred hhhhhHHHHHHHHHHHHHhcC----CeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEec--
Q 001735 804 KWFGDAEKLTKALFSFASKLA----PVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGAT-- 877 (1019)
Q Consensus 804 ~~~Ge~e~~I~~lF~~Ark~~----PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTT-- 877 (1019)
...+.++.+|+.|++.. ..|||||||+++....+ ..||-.+ ++..|++||+|
T Consensus 84 ----~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQ------------D~lLp~v------E~G~iilIGATTE 141 (436)
T COG2256 84 ----SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQ------------DALLPHV------ENGTIILIGATTE 141 (436)
T ss_pred ----ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhh------------hhhhhhh------cCCeEEEEeccCC
Confidence 23567888888886554 38999999999843322 2444444 45678888877
Q ss_pred CCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhc--cCCC------CccCHHHHHHHhcC
Q 001735 878 NRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAH--ESLE------SGFQFNELANATEG 933 (1019)
Q Consensus 878 N~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~--~~l~------~dvdl~~LA~~TeG 933 (1019)
|+...|.+++++|+ +++.+.+.+.++..++++..+.. .++. ++..+..|+..+.|
T Consensus 142 NPsF~ln~ALlSR~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G 204 (436)
T COG2256 142 NPSFELNPALLSRA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG 204 (436)
T ss_pred CCCeeecHHHhhhh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc
Confidence 77788999999999 78888999999999999984432 2222 22235556666665
No 87
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.62 E-value=4.6e-15 Score=184.50 Aligned_cols=231 Identities=17% Similarity=0.242 Sum_probs=153.4
Q ss_pred cccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc--------
Q 001735 731 DIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT-------- 802 (1019)
Q Consensus 731 DIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~-------- 802 (1019)
++.|++++++.+.+++.....+. . .....+||+||||||||++|++||+.++.+|+.+++..+.
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~------~--~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRG------K--MKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhc------C--CCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 58899999999999876543221 1 1224799999999999999999999999999999876542
Q ss_pred -hhhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcc-----cc------ccCCCc
Q 001735 803 -SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDG-----LR------SKESQK 870 (1019)
Q Consensus 803 -s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldg-----l~------~~~~~~ 870 (1019)
..|.|.....+.+.|..+....| ||||||||.+....++. ..+.|+..|+. +. ..+..+
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~~--------~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~ 463 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRGD--------PASALLEVLDPEQNNAFSDHYLDVPFDLSK 463 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCCC--------HHHHHHHhcCHHhcCccccccCCceeccCC
Confidence 23556656667778888766555 89999999997543321 12344544442 10 012247
Q ss_pred EEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHh-----ccCCC------CccCHHHHHH-HhcCCCHHH
Q 001735 871 ILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLA-----HESLE------SGFQFNELAN-ATEGYSGSD 938 (1019)
Q Consensus 871 VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~-----~~~l~------~dvdl~~LA~-~TeG~SgaD 938 (1019)
+++|+|||.++.+++++++|| ..|.++.|+.+++.+|++.++. ...+. ++..+..|++ .+..+..++
T Consensus 464 v~~I~TtN~~~~i~~~L~~R~-~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~ 542 (775)
T TIGR00763 464 VIFIATANSIDTIPRPLLDRM-EVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRN 542 (775)
T ss_pred EEEEEecCCchhCCHHHhCCe-eEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChH
Confidence 899999999999999999999 5789999999999999988763 11221 1222444444 233444577
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHH
Q 001735 939 LKNLCIAAAYRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQSK 982 (1019)
Q Consensus 939 L~~L~~~Aa~~Airr~l~~~~~~~~~~~~~~~~pLT~eDF~~Al 982 (1019)
|+..+...+..+.++++..... .........++.+++..-+
T Consensus 543 l~r~i~~~~~~~~~~~~~~~~~---~~~~~~~v~i~~~~~~~~l 583 (775)
T TIGR00763 543 LERQIEKICRKAAVKLVEQGEK---KKSEAESVVITPDNLKKYL 583 (775)
T ss_pred HHHHHHHHHHHHHHHHHhccCc---ccCCcccccCCHHHHHHhc
Confidence 7777776666555555431110 0001112357777766554
No 88
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.61 E-value=1.1e-14 Score=179.26 Aligned_cols=197 Identities=22% Similarity=0.265 Sum_probs=142.0
Q ss_pred ccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 001735 728 RFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA----------GANFISIT 797 (1019)
Q Consensus 728 tfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~el----------g~~fi~Is 797 (1019)
.++.+.|.++....+.+.+.. +...++||+||||||||++|+++|... +..++.++
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r--------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~ 249 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCR--------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhc--------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc
Confidence 466788999888888776532 122568999999999999999999875 45566666
Q ss_pred ccccc--hhhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEE
Q 001735 798 GSTLT--SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILG 875 (1019)
Q Consensus 798 ~seL~--s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIa 875 (1019)
...++ ..|.|+.+..++.+|..+.+..++||||||||.|++.......... +.+.|...+ ....+.+|+
T Consensus 250 ~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d---~~nlLkp~L------~~g~i~vIg 320 (758)
T PRK11034 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVD---AANLIKPLL------SSGKIRVIG 320 (758)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHH---HHHHHHHHH------hCCCeEEEe
Confidence 66655 3577889999999999998888999999999999876542211111 122222222 234799999
Q ss_pred ecCCCC-----CCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCCCccCHHH-----HHHHhc-----CCCHHHHH
Q 001735 876 ATNRPF-----DLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNE-----LANATE-----GYSGSDLK 940 (1019)
Q Consensus 876 TTN~p~-----~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~-----LA~~Te-----G~SgaDL~ 940 (1019)
+|+.++ ..|+++.|||. .|.|+.|+.+++..||+.+........++.+.. ++..+. .+-+....
T Consensus 321 ATt~~E~~~~~~~D~AL~rRFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKai 399 (758)
T PRK11034 321 STTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAI 399 (758)
T ss_pred cCChHHHHHHhhccHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHH
Confidence 998764 58999999995 899999999999999998876555444444433 333333 34455777
Q ss_pred HHHHHHHH
Q 001735 941 NLCIAAAY 948 (1019)
Q Consensus 941 ~L~~~Aa~ 948 (1019)
.++.+|+.
T Consensus 400 dlldea~a 407 (758)
T PRK11034 400 DVIDEAGA 407 (758)
T ss_pred HHHHHHHH
Confidence 88888764
No 89
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.59 E-value=4e-14 Score=166.18 Aligned_cols=212 Identities=18% Similarity=0.274 Sum_probs=139.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhcc
Q 001735 766 KGILLFGPPGTGKTLLAKALATEA-----GANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGAR 840 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~el-----g~~fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r 840 (1019)
++++||||+|+|||+|++++++++ +..++++++.++...+..........-|....+ .+.+|+||||+.+.++.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~ 227 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGKE 227 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCCH
Confidence 569999999999999999999987 567889999887765544432222233433333 57899999999985432
Q ss_pred CCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCC---CcHHHHhhCCC--CcccCCCCHHHHHHHHHHHHhc
Q 001735 841 GGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFD---LDDAVIRRLPR--RIYVDLPDAENRMKILRIFLAH 915 (1019)
Q Consensus 841 ~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~---LD~aLlrRFd~--~I~V~lPd~eeR~eILk~~L~~ 915 (1019)
. ...+|+..++.+... .+.+||+++..|.. +++.+++||.. .+.+..|+.++|..|++..+..
T Consensus 228 ~----------~~~~l~~~~n~l~~~--~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~ 295 (450)
T PRK00149 228 R----------TQEEFFHTFNALHEA--GKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEE 295 (450)
T ss_pred H----------HHHHHHHHHHHHHHC--CCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHH
Confidence 1 122344444433222 23456666666655 67899999964 6788999999999999999886
Q ss_pred cCCC-CccCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHHhhCCCcccchh
Q 001735 916 ESLE-SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAYDAA 994 (1019)
Q Consensus 916 ~~l~-~dvdl~~LA~~TeG~SgaDL~~L~~~Aa~~Airr~l~~~~~~~~~~~~~~~~pLT~eDF~~Al~kv~PS~s~~~~ 994 (1019)
.++. ++..++.||....| +.++|..++......+... .++||++.+.+++..+...-.....
T Consensus 296 ~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~~~~~----------------~~~it~~~~~~~l~~~~~~~~~~~~ 358 (450)
T PRK00149 296 EGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAYASLT----------------GKPITLELAKEALKDLLAAQKKKIT 358 (450)
T ss_pred cCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHHHHhh----------------CCCCCHHHHHHHHHHhhccCCCCCC
Confidence 5433 33447778877765 6777777766554332211 1568889999988876322222222
Q ss_pred cHHHHHHHHHHhC
Q 001735 995 SMNELRKWNEQYG 1007 (1019)
Q Consensus 995 ~m~~lvkW~digG 1007 (1019)
.-.=+..-.+.||
T Consensus 359 ~~~i~~~v~~~~~ 371 (450)
T PRK00149 359 IENIQKVVAEYYN 371 (450)
T ss_pred HHHHHHHHHHHcC
Confidence 2223446777787
No 90
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.58 E-value=5.9e-14 Score=162.51 Aligned_cols=190 Identities=19% Similarity=0.327 Sum_probs=126.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhcc
Q 001735 766 KGILLFGPPGTGKTLLAKALATEA-----GANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGAR 840 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~el-----g~~fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r 840 (1019)
.+++||||+|+|||+|++++++++ +..++++++.++...+...........|....+ .+.+|+||||+.+.+..
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~ 215 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR-SVDLLLIDDIQFLAGKE 215 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH-hCCEEEEehhhhhcCCH
Confidence 569999999999999999999987 578899998877655433322111122322222 36899999999985432
Q ss_pred CCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCC---CcHHHHhhCCC--CcccCCCCHHHHHHHHHHHHhc
Q 001735 841 GGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFD---LDDAVIRRLPR--RIYVDLPDAENRMKILRIFLAH 915 (1019)
Q Consensus 841 ~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~---LD~aLlrRFd~--~I~V~lPd~eeR~eILk~~L~~ 915 (1019)
....+|+..++.+.. ..+.+||+++..|.. +++.+++||.. .+.++.|+.++|..|++..+..
T Consensus 216 ----------~~~~~l~~~~n~~~~--~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~ 283 (405)
T TIGR00362 216 ----------RTQEEFFHTFNALHE--NGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEE 283 (405)
T ss_pred ----------HHHHHHHHHHHHHHH--CCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 112234444433322 223456666555554 66789999964 6888999999999999999886
Q ss_pred cCCC-CccCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHHhh
Q 001735 916 ESLE-SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQSKAKV 985 (1019)
Q Consensus 916 ~~l~-~dvdl~~LA~~TeG~SgaDL~~L~~~Aa~~Airr~l~~~~~~~~~~~~~~~~pLT~eDF~~Al~kv 985 (1019)
..+. ++..+..||....+ +.++|..++......+... .++||++.+.+++...
T Consensus 284 ~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a~~~----------------~~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 284 EGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAYASLT----------------GKPITLELAKEALKDL 337 (405)
T ss_pred cCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHh----------------CCCCCHHHHHHHHHHh
Confidence 6554 34447778887765 7788887776654333211 1457777777777665
No 91
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=1.2e-13 Score=164.95 Aligned_cols=184 Identities=21% Similarity=0.241 Sum_probs=134.8
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA--------------- 791 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~--------------- 791 (1019)
.+|+||+|++.+++.|.+.+.. -+.++.+||+||+|+|||++|+++|+.+++
T Consensus 13 qtFddVIGQe~vv~~L~~al~~-------------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG 79 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQ-------------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCG 79 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHh-------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCc
Confidence 5799999999999999998743 123467899999999999999999999875
Q ss_pred --------------cEEEEeccccchhhhhhHHHHHHHHHHHHH----hcCCeEEEeccchhhhhccCCCchhHHHHHHH
Q 001735 792 --------------NFISITGSTLTSKWFGDAEKLTKALFSFAS----KLAPVIIFVDEVDSLLGARGGAFEHEATRRMR 853 (1019)
Q Consensus 792 --------------~fi~Is~seL~s~~~Ge~e~~I~~lF~~Ar----k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril 853 (1019)
.++.++...- .. ...++.+...+. .....|+||||+|.|.. ...
T Consensus 80 ~C~sC~~I~aG~hpDviEIdAas~--~g----VDdIReLie~~~~~P~~gr~KViIIDEah~Ls~------------~Aa 141 (700)
T PRK12323 80 QCRACTEIDAGRFVDYIEMDAASN--RG----VDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN------------HAF 141 (700)
T ss_pred ccHHHHHHHcCCCCcceEeccccc--CC----HHHHHHHHHHHHhchhcCCceEEEEEChHhcCH------------HHH
Confidence 2333333211 11 223333433332 23357999999999832 235
Q ss_pred HHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCCCc-cCHHHHHHHhc
Q 001735 854 NEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLESG-FQFNELANATE 932 (1019)
Q Consensus 854 ~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~~d-vdl~~LA~~Te 932 (1019)
|.||..|+. +...+++|.+||.+..|.+.|++|| ..+.|..++.++..+.++.++..+++..+ ..+..|+..+.
T Consensus 142 NALLKTLEE----PP~~v~FILaTtep~kLlpTIrSRC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~ 216 (700)
T PRK12323 142 NAMLKTLEE----PPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQ 216 (700)
T ss_pred HHHHHhhcc----CCCCceEEEEeCChHhhhhHHHHHH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 677777654 2356788888999999999999999 78899999999999999988887665432 23677788887
Q ss_pred CCCHHHHHHHHHHHH
Q 001735 933 GYSGSDLKNLCIAAA 947 (1019)
Q Consensus 933 G~SgaDL~~L~~~Aa 947 (1019)
| +.++..+++..+.
T Consensus 217 G-s~RdALsLLdQai 230 (700)
T PRK12323 217 G-SMRDALSLTDQAI 230 (700)
T ss_pred C-CHHHHHHHHHHHH
Confidence 7 7788888876654
No 92
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=1.3e-13 Score=161.12 Aligned_cols=184 Identities=17% Similarity=0.186 Sum_probs=132.7
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 792 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~-------------- 792 (1019)
.+|+|++|++.+...|...+.. + +.+..+||+||+|||||++|+++|+.+++.
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~-----------~--ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC 81 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKS-----------G--KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSC 81 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHc-----------C--CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHH
Confidence 5799999999999999888743 1 233569999999999999999999998652
Q ss_pred ----------EEEEeccccchhhhhhHHHHHHHHHHHHH----hcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHh
Q 001735 793 ----------FISITGSTLTSKWFGDAEKLTKALFSFAS----KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 858 (1019)
Q Consensus 793 ----------fi~Is~seL~s~~~Ge~e~~I~~lF~~Ar----k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~ 858 (1019)
|+.+++..- .....++.+...+. .....|+||||+|.|. ....+.|+.
T Consensus 82 ~~i~~g~~~dviEIdaas~------~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls------------~~A~NALLK 143 (484)
T PRK14956 82 LEITKGISSDVLEIDAASN------RGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT------------DQSFNALLK 143 (484)
T ss_pred HHHHccCCccceeechhhc------ccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC------------HHHHHHHHH
Confidence 333333211 11223333333332 2345799999999983 223566777
Q ss_pred hhccccccCCCcEEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCC-CccCHHHHHHHhcCCCHH
Q 001735 859 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGS 937 (1019)
Q Consensus 859 ~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeG~Sga 937 (1019)
.++. +...+++|.+|+.++.|.+++++|| ..+.|..++.++..++++.++..+++. ++..+..||..++| +.+
T Consensus 144 tLEE----Pp~~viFILaTte~~kI~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G-d~R 217 (484)
T PRK14956 144 TLEE----PPAHIVFILATTEFHKIPETILSRC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG-SVR 217 (484)
T ss_pred Hhhc----CCCceEEEeecCChhhccHHHHhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-hHH
Confidence 6644 2357888888888999999999999 578888888889999999988876654 34457778888887 667
Q ss_pred HHHHHHHHHH
Q 001735 938 DLKNLCIAAA 947 (1019)
Q Consensus 938 DL~~L~~~Aa 947 (1019)
+..+++..++
T Consensus 218 dAL~lLeq~i 227 (484)
T PRK14956 218 DMLSFMEQAI 227 (484)
T ss_pred HHHHHHHHHH
Confidence 7777766543
No 93
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1e-12 Score=159.72 Aligned_cols=205 Identities=21% Similarity=0.261 Sum_probs=140.4
Q ss_pred cccChHHHHHHHHHHHHcccCCchhhccCCC---CCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEeccccchh
Q 001735 731 DIGALEDVKKALNELVILPMRRPDLFSRGNL---LRPCKGILLFGPPGTGKTLLAKALATEAG---ANFISITGSTLTSK 804 (1019)
Q Consensus 731 DIgGle~vk~~L~e~V~~pL~~pelf~~~gl---~~p~~gVLL~GPpGTGKT~LArAIA~elg---~~fi~Is~seL~s~ 804 (1019)
.|.|+++..+.+...|... +.|+ .+|..++||.||+|+|||-||+++|..+. -.++.++|++.+.+
T Consensus 492 rViGQd~AV~avs~aIrra--------RaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~Ek 563 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRA--------RAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEK 563 (786)
T ss_pred ceeChHHHHHHHHHHHHHH--------hcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHH
Confidence 4789999999998888542 2332 34555689999999999999999999995 79999999988544
Q ss_pred h-----hhhHHHHH-----HHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcccccc-------C
Q 001735 805 W-----FGDAEKLT-----KALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSK-------E 867 (1019)
Q Consensus 805 ~-----~Ge~e~~I-----~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~-------~ 867 (1019)
+ .|.+..++ ..+-+..++.+.|||++|||+.- ...+++.||+.||.-.-. .
T Consensus 564 HsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKA------------HpdV~nilLQVlDdGrLTD~~Gr~Vd 631 (786)
T COG0542 564 HSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKA------------HPDVFNLLLQVLDDGRLTDGQGRTVD 631 (786)
T ss_pred HHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhc------------CHHHHHHHHHHhcCCeeecCCCCEEe
Confidence 2 22221111 23334456777899999999873 356788999998843322 2
Q ss_pred CCcEEEEEecCCCCC----------------------------CcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhcc---
Q 001735 868 SQKILILGATNRPFD----------------------------LDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHE--- 916 (1019)
Q Consensus 868 ~~~VLVIaTTN~p~~----------------------------LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~--- 916 (1019)
-.+.+||+|||--.. ..|+++.|++.+|.|...+.+...+|+...+...
T Consensus 632 FrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~ 711 (786)
T COG0542 632 FRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKR 711 (786)
T ss_pred cceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHH
Confidence 236789999973210 3467888999999999999999999998877632
Q ss_pred ----CCC---CccCHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHH
Q 001735 917 ----SLE---SGFQFNELANATE--GYSGSDLKNLCIAAAYRPVQELL 955 (1019)
Q Consensus 917 ----~l~---~dvdl~~LA~~Te--G~SgaDL~~L~~~Aa~~Airr~l 955 (1019)
.+. ++.-...|+.... .|-++-|+.+++.-....+.+.+
T Consensus 712 L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~~i 759 (786)
T COG0542 712 LAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLADEI 759 (786)
T ss_pred HHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHHHHHHHHH
Confidence 111 1122344554432 45567777777766655555443
No 94
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=1.6e-13 Score=165.75 Aligned_cols=185 Identities=21% Similarity=0.223 Sum_probs=135.2
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA--------------- 791 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~--------------- 791 (1019)
.+|++|+|++.+++.|..++.. .+.++.+||+||+|||||++|+++|+.+++
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~-------------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sC 79 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDG-------------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRAC 79 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHH
Confidence 5799999999999999988743 123466899999999999999999998864
Q ss_pred ---------cEEEEeccccchhhhhhHHHHHHHHHHHHHh----cCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHh
Q 001735 792 ---------NFISITGSTLTSKWFGDAEKLTKALFSFASK----LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 858 (1019)
Q Consensus 792 ---------~fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark----~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~ 858 (1019)
.++.++..+- .....++.+...+.. ....||||||+|.|.. ...|.|+.
T Consensus 80 r~I~~G~h~DviEIDAas~------rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~------------~A~NALLK 141 (830)
T PRK07003 80 REIDEGRFVDYVEMDAASN------RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN------------HAFNAMLK 141 (830)
T ss_pred HHHhcCCCceEEEeccccc------ccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH------------HHHHHHHH
Confidence 2333433221 112234444444332 2347999999999842 23456666
Q ss_pred hhccccccCCCcEEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCC-CccCHHHHHHHhcCCCHH
Q 001735 859 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGS 937 (1019)
Q Consensus 859 ~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeG~Sga 937 (1019)
.|+.. ...+.||.+||.+..|.+.|++|| ..+.|..++.++..++|+.++..+++. ++..+..|++.+.| +.+
T Consensus 142 tLEEP----P~~v~FILaTtd~~KIp~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~G-smR 215 (830)
T PRK07003 142 TLEEP----PPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQG-SMR 215 (830)
T ss_pred HHHhc----CCCeEEEEEECChhhccchhhhhe-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 66542 346888889999999999999999 788999999999999999998877664 34447778888887 667
Q ss_pred HHHHHHHHHHH
Q 001735 938 DLKNLCIAAAY 948 (1019)
Q Consensus 938 DL~~L~~~Aa~ 948 (1019)
+..+++..+..
T Consensus 216 dALsLLdQAia 226 (830)
T PRK07003 216 DALSLTDQAIA 226 (830)
T ss_pred HHHHHHHHHHH
Confidence 77777766553
No 95
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.53 E-value=1.6e-13 Score=148.51 Aligned_cols=195 Identities=24% Similarity=0.277 Sum_probs=136.4
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhh
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWF 806 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s~~~ 806 (1019)
.+|+|.+|++++|++|.-++.-...+. ...-++|||||||.|||+||..||+++|.++...+++.+..
T Consensus 23 ~~l~efiGQ~~vk~~L~ifI~AAk~r~---------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK--- 90 (332)
T COG2255 23 KTLDEFIGQEKVKEQLQIFIKAAKKRG---------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK--- 90 (332)
T ss_pred ccHHHhcChHHHHHHHHHHHHHHHhcC---------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC---
Confidence 479999999999999998886643332 34568999999999999999999999999998887766532
Q ss_pred hhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHH-hhhccccc------cCCCcEEEEEecCC
Q 001735 807 GDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFM-SAWDGLRS------KESQKILILGATNR 879 (1019)
Q Consensus 807 Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL-~~Ldgl~~------~~~~~VLVIaTTN~ 879 (1019)
..-+..++... ....|||||||+++.+.. .+..-..+..|. ..+-|--+ -+-.++.+||+|.+
T Consensus 91 ---~gDlaaiLt~L--e~~DVLFIDEIHrl~~~v-----EE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr 160 (332)
T COG2255 91 ---PGDLAAILTNL--EEGDVLFIDEIHRLSPAV-----EEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTR 160 (332)
T ss_pred ---hhhHHHHHhcC--CcCCeEEEehhhhcChhH-----HHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccc
Confidence 12233333332 245899999999985331 111111111111 00001100 02236789999999
Q ss_pred CCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCC-CccCHHHHHHHhcCCCHHHHHHHHH
Q 001735 880 PFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLKNLCI 944 (1019)
Q Consensus 880 p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeG~SgaDL~~L~~ 944 (1019)
...|...++.||.....+...+.++..+|+........+. .+....+||+++.| |++--..|++
T Consensus 161 ~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLr 225 (332)
T COG2255 161 AGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLR 225 (332)
T ss_pred cccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHH
Confidence 9999999999999999999999999999999887665554 33346788999988 5554444443
No 96
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.52 E-value=3.3e-13 Score=168.97 Aligned_cols=196 Identities=23% Similarity=0.321 Sum_probs=140.0
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA----------GANFISI 796 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~el----------g~~fi~I 796 (1019)
-++++++|.++.+..+.+.+.. +...+++|+||||||||++|+.+|..+ +.+++.+
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r--------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLR--------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhc--------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 3678899999876666554421 123579999999999999999999986 3557888
Q ss_pred eccccch--hhhhhHHHHHHHHHHHHHhc-CCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEE
Q 001735 797 TGSTLTS--KWFGDAEKLTKALFSFASKL-APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILI 873 (1019)
Q Consensus 797 s~seL~s--~~~Ge~e~~I~~lF~~Ark~-~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLV 873 (1019)
++..+.. .+.|+.+..++.+|..++.. .+.|||||||+.+.+.+........ .+.|...+ ....+.+
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~----~n~Lkp~l------~~G~l~~ 319 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDA----ANLLKPAL------ARGELRT 319 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccH----HHHhhHHh------hCCCeEE
Confidence 8877753 57889999999999998753 5799999999999876532211111 12232222 2356889
Q ss_pred EEecCCC-----CCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccC----C-CCccCHHHHHHHhcCCCH-----HH
Q 001735 874 LGATNRP-----FDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHES----L-ESGFQFNELANATEGYSG-----SD 938 (1019)
Q Consensus 874 IaTTN~p-----~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~----l-~~dvdl~~LA~~TeG~Sg-----aD 938 (1019)
||||+.. ..+|++|.||| ..|.|+.|+.+++..||+.+..... + ..+..+..++..+.+|-. ..
T Consensus 320 IgaTT~~e~~~~~~~d~AL~rRf-~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDK 398 (852)
T TIGR03345 320 IAATTWAEYKKYFEKDPALTRRF-QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDK 398 (852)
T ss_pred EEecCHHHHhhhhhccHHHHHhC-eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccH
Confidence 9998753 34999999999 5899999999999999876665322 2 134457778888887653 33
Q ss_pred HHHHHHHHH
Q 001735 939 LKNLCIAAA 947 (1019)
Q Consensus 939 L~~L~~~Aa 947 (1019)
-..|+.+|+
T Consensus 399 AIdlldea~ 407 (852)
T TIGR03345 399 AVSLLDTAC 407 (852)
T ss_pred HHHHHHHHH
Confidence 334555554
No 97
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=2.6e-13 Score=159.80 Aligned_cols=182 Identities=18% Similarity=0.194 Sum_probs=127.1
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA--------------- 791 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~--------------- 791 (1019)
.+|+|++|++.+++.|...+.. -+.+.++||+||||||||++|+++|+.+++
T Consensus 11 ~~~~divGq~~i~~~L~~~i~~-------------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c 77 (472)
T PRK14962 11 KTFSEVVGQDHVKKLIINALKK-------------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRAC 77 (472)
T ss_pred CCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHH
Confidence 5799999999999999887643 123467999999999999999999999864
Q ss_pred ---------cEEEEeccccchhhhhhHHHHHHHHHHHHHhc----CCeEEEeccchhhhhccCCCchhHHHHHHHHHHHh
Q 001735 792 ---------NFISITGSTLTSKWFGDAEKLTKALFSFASKL----APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 858 (1019)
Q Consensus 792 ---------~fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark~----~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~ 858 (1019)
.++.++++.-. ....++.+...+... ...||||||+|.|.. ...+.|+.
T Consensus 78 ~~i~~g~~~dv~el~aa~~~------gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~------------~a~~~LLk 139 (472)
T PRK14962 78 RSIDEGTFMDVIELDAASNR------GIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK------------EAFNALLK 139 (472)
T ss_pred HHHhcCCCCccEEEeCcccC------CHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH------------HHHHHHHH
Confidence 35555543211 122344444444321 346999999999842 12345666
Q ss_pred hhccccccCCCcEEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCC-CccCHHHHHHHhcCCCHH
Q 001735 859 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGS 937 (1019)
Q Consensus 859 ~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeG~Sga 937 (1019)
.++.. ...+++|++|+.+..+.+++++|| ..+.+..|+.++...+++..+...++. ++..+..|+..+.| ..+
T Consensus 140 ~LE~p----~~~vv~Ilattn~~kl~~~L~SR~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~G-dlR 213 (472)
T PRK14962 140 TLEEP----PSHVVFVLATTNLEKVPPTIISRC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASG-GLR 213 (472)
T ss_pred HHHhC----CCcEEEEEEeCChHhhhHHHhcCc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-CHH
Confidence 65542 235677777777889999999999 578899999999999999888765543 33346778877765 555
Q ss_pred HHHHHHHH
Q 001735 938 DLKNLCIA 945 (1019)
Q Consensus 938 DL~~L~~~ 945 (1019)
++.+++..
T Consensus 214 ~aln~Le~ 221 (472)
T PRK14962 214 DALTMLEQ 221 (472)
T ss_pred HHHHHHHH
Confidence 55555544
No 98
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.50 E-value=2.5e-13 Score=170.33 Aligned_cols=165 Identities=25% Similarity=0.388 Sum_probs=125.6
Q ss_pred ccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 001735 728 RFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA----------GANFISIT 797 (1019)
Q Consensus 728 tfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~el----------g~~fi~Is 797 (1019)
.+++++|.+..+..+.+.+.. +...+++|+||||||||++|+++|..+ +.+++.++
T Consensus 176 ~l~~vigr~~ei~~~i~iL~r--------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~ 241 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVLQR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 241 (857)
T ss_pred CCCcCCCCHHHHHHHHHHHhc--------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEe
Confidence 577899999876666655422 122569999999999999999999987 67899998
Q ss_pred ccccc--hhhhhhHHHHHHHHHHHHHh-cCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEE
Q 001735 798 GSTLT--SKWFGDAEKLTKALFSFASK-LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILIL 874 (1019)
Q Consensus 798 ~seL~--s~~~Ge~e~~I~~lF~~Ark-~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVI 874 (1019)
+..+. .++.|+.+..++.+|..+.+ ..++||||||+|.|.+........... +.|...+ ....+.+|
T Consensus 242 l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~----~~lkp~l------~~g~l~~I 311 (857)
T PRK10865 242 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAG----NMLKPAL------ARGELHCV 311 (857)
T ss_pred hhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHH----HHhcchh------hcCCCeEE
Confidence 88876 45788999999999988644 468999999999998765332222221 2222222 34578999
Q ss_pred EecCCCC-----CCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccC
Q 001735 875 GATNRPF-----DLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHES 917 (1019)
Q Consensus 875 aTTN~p~-----~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~ 917 (1019)
|+|+..+ .+|+++.|||. .|.++.|+.+++..|++.+.....
T Consensus 312 gaTt~~e~r~~~~~d~al~rRf~-~i~v~eP~~~~~~~iL~~l~~~~e 358 (857)
T PRK10865 312 GATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAILRGLKERYE 358 (857)
T ss_pred EcCCCHHHHHHhhhcHHHHhhCC-EEEeCCCCHHHHHHHHHHHhhhhc
Confidence 9998765 48999999996 688999999999999998765433
No 99
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.50 E-value=1e-12 Score=152.84 Aligned_cols=180 Identities=24% Similarity=0.363 Sum_probs=124.2
Q ss_pred cccccccChHHHHHH---HHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch
Q 001735 727 VRFDDIGALEDVKKA---LNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS 803 (1019)
Q Consensus 727 vtfdDIgGle~vk~~---L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s 803 (1019)
.+|+|++|++.+... |..++.. ....++||+||||||||+||+++|+.++.+|+.+++....
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~--------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~- 73 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEA--------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSG- 73 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHc--------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccc-
Confidence 468999999998666 7776632 1224799999999999999999999999999999876431
Q ss_pred hhhhhHHHHHHHHHHHHH----hcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEec--
Q 001735 804 KWFGDAEKLTKALFSFAS----KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGAT-- 877 (1019)
Q Consensus 804 ~~~Ge~e~~I~~lF~~Ar----k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTT-- 877 (1019)
...++.++..+. .....||||||+|.+... ..+.|+..++. ..+++|++|
T Consensus 74 ------~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~------------~q~~LL~~le~------~~iilI~att~ 129 (413)
T PRK13342 74 ------VKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA------------QQDALLPHVED------GTITLIGATTE 129 (413)
T ss_pred ------HHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH------------HHHHHHHHhhc------CcEEEEEeCCC
Confidence 123344444442 225689999999998422 12344444432 346666654
Q ss_pred CCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccC--C--CCccCHHHHHHHhcCCCHHHHHHHHHHHH
Q 001735 878 NRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHES--L--ESGFQFNELANATEGYSGSDLKNLCIAAA 947 (1019)
Q Consensus 878 N~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~--l--~~dvdl~~LA~~TeG~SgaDL~~L~~~Aa 947 (1019)
|....+++++++|| ..+.++.++.++...+++..+.... + .++..+..|+..+.| ..+.+.++++.++
T Consensus 130 n~~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~~ 201 (413)
T PRK13342 130 NPSFEVNPALLSRA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELAA 201 (413)
T ss_pred ChhhhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 34457999999999 7889999999999999998876421 1 122235667777754 5566666666554
No 100
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=7.3e-13 Score=158.70 Aligned_cols=184 Identities=23% Similarity=0.246 Sum_probs=134.4
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA--------------- 791 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~--------------- 791 (1019)
.+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+++
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~-------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC 78 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALER-------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATC 78 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHH
Confidence 5799999999999999988743 133467999999999999999999999865
Q ss_pred ---------cEEEEeccccchhhhhhHHHHHHHHHHHHH----hcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHh
Q 001735 792 ---------NFISITGSTLTSKWFGDAEKLTKALFSFAS----KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 858 (1019)
Q Consensus 792 ---------~fi~Is~seL~s~~~Ge~e~~I~~lF~~Ar----k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~ 858 (1019)
.++.+++++-. ....++.+...+. .....|+||||+|.|.. ...+.|+.
T Consensus 79 ~~I~~g~hpDviEIDAAs~~------~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~------------~A~NALLK 140 (702)
T PRK14960 79 KAVNEGRFIDLIEIDAASRT------KVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST------------HSFNALLK 140 (702)
T ss_pred HHHhcCCCCceEEecccccC------CHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH------------HHHHHHHH
Confidence 34444443211 1223444444332 22357999999999842 23456666
Q ss_pred hhccccccCCCcEEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCC-CccCHHHHHHHhcCCCHH
Q 001735 859 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGS 937 (1019)
Q Consensus 859 ~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeG~Sga 937 (1019)
.++.. ...+.+|.+|+.+..+...+++|+ ..+.+..++.++...+++.++..+++. ++..+..||..+.| +.+
T Consensus 141 tLEEP----P~~v~FILaTtd~~kIp~TIlSRC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-dLR 214 (702)
T PRK14960 141 TLEEP----PEHVKFLFATTDPQKLPITVISRC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-SLR 214 (702)
T ss_pred HHhcC----CCCcEEEEEECChHhhhHHHHHhh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 66543 245677777888888999999999 688999999999999999999877654 33447778888876 778
Q ss_pred HHHHHHHHHH
Q 001735 938 DLKNLCIAAA 947 (1019)
Q Consensus 938 DL~~L~~~Aa 947 (1019)
++.+++..+.
T Consensus 215 dALnLLDQaI 224 (702)
T PRK14960 215 DALSLTDQAI 224 (702)
T ss_pred HHHHHHHHHH
Confidence 8888876654
No 101
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=8.4e-13 Score=151.11 Aligned_cols=184 Identities=22% Similarity=0.260 Sum_probs=130.3
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 792 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~-------------- 792 (1019)
.+|++|+|++.+++.|...+.. -+.++.+||+||||+|||++|+++|+.+.+.
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~-------------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c 79 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSL-------------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIIC 79 (363)
T ss_pred CchhhccChHHHHHHHHHHHHc-------------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 5799999999999999887743 1234668999999999999999999998632
Q ss_pred ----------EEEEeccccchhhhhhHHHHHHHHHHHHHhc----CCeEEEeccchhhhhccCCCchhHHHHHHHHHHHh
Q 001735 793 ----------FISITGSTLTSKWFGDAEKLTKALFSFASKL----APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 858 (1019)
Q Consensus 793 ----------fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark~----~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~ 858 (1019)
++.+++.. ......++.+...+... ...|++|||+|.+.. ...+.|+.
T Consensus 80 ~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~------------~a~naLLk 141 (363)
T PRK14961 80 KEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR------------HSFNALLK 141 (363)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH------------HHHHHHHH
Confidence 22222211 01123345555444322 246999999998831 22345666
Q ss_pred hhccccccCCCcEEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCC-CccCHHHHHHHhcCCCHH
Q 001735 859 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGS 937 (1019)
Q Consensus 859 ~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeG~Sga 937 (1019)
.++.. ...+.+|.+|+.++.+.+.+++|+ ..+.+++|+.++..++++..+...+.. ++..+..++..+.| +.+
T Consensus 142 ~lEe~----~~~~~fIl~t~~~~~l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~R 215 (363)
T PRK14961 142 TLEEP----PQHIKFILATTDVEKIPKTILSRC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SMR 215 (363)
T ss_pred HHhcC----CCCeEEEEEcCChHhhhHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 66542 335667777777888999999999 678999999999999999988876643 33456778888876 777
Q ss_pred HHHHHHHHHH
Q 001735 938 DLKNLCIAAA 947 (1019)
Q Consensus 938 DL~~L~~~Aa 947 (1019)
++.+++..++
T Consensus 216 ~al~~l~~~~ 225 (363)
T PRK14961 216 DALNLLEHAI 225 (363)
T ss_pred HHHHHHHHHH
Confidence 7777776654
No 102
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.49 E-value=2.7e-12 Score=145.86 Aligned_cols=221 Identities=19% Similarity=0.239 Sum_probs=141.5
Q ss_pred ccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---------CcEEEEeccc
Q 001735 730 DDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAG---------ANFISITGST 800 (1019)
Q Consensus 730 dDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg---------~~fi~Is~se 800 (1019)
+++.|.++.++.|..++...+. + ..+.+++|+||||||||++++++++++. +.+++++|..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~-------~---~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR-------G---SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc-------C---CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 4688999999999888754221 1 1235699999999999999999998762 5788888866
Q ss_pred cchhh--h----------h--------hHHHHHHHHHHHHH-hcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhh
Q 001735 801 LTSKW--F----------G--------DAEKLTKALFSFAS-KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSA 859 (1019)
Q Consensus 801 L~s~~--~----------G--------e~e~~I~~lF~~Ar-k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~ 859 (1019)
..+.+ . + ........++.... ...+.||+|||+|.+.... ..++.+|+..
T Consensus 85 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~---------~~~L~~l~~~ 155 (365)
T TIGR02928 85 LDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD---------DDLLYQLSRA 155 (365)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC---------cHHHHhHhcc
Confidence 43211 0 0 11223344444443 2356899999999997221 1233444433
Q ss_pred hccccccCCCcEEEEEecCCCC---CCcHHHHhhCC-CCcccCCCCHHHHHHHHHHHHhcc---CCCCccCHHHHHH---
Q 001735 860 WDGLRSKESQKILILGATNRPF---DLDDAVIRRLP-RRIYVDLPDAENRMKILRIFLAHE---SLESGFQFNELAN--- 929 (1019)
Q Consensus 860 Ldgl~~~~~~~VLVIaTTN~p~---~LD~aLlrRFd-~~I~V~lPd~eeR~eILk~~L~~~---~l~~dvdl~~LA~--- 929 (1019)
... ....+.++.+|+++|.+. .+++.+.+||. ..+.+++++.++..+|++..+... ...++..+..++.
T Consensus 156 ~~~-~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~ 234 (365)
T TIGR02928 156 RSN-GDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAA 234 (365)
T ss_pred ccc-cCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHH
Confidence 111 112335788999998876 47888888885 568999999999999999888621 1112222333333
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHHhhC
Q 001735 930 ATEGYSGSDLKNLCIAAAYRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQSKAKVG 986 (1019)
Q Consensus 930 ~TeG~SgaDL~~L~~~Aa~~Airr~l~~~~~~~~~~~~~~~~pLT~eDF~~Al~kv~ 986 (1019)
.+.| ..+.+..+|..|+..|..+. ...|+.+|+..|+..+.
T Consensus 235 ~~~G-d~R~al~~l~~a~~~a~~~~---------------~~~it~~~v~~a~~~~~ 275 (365)
T TIGR02928 235 QEHG-DARKAIDLLRVAGEIAEREG---------------AERVTEDHVEKAQEKIE 275 (365)
T ss_pred HhcC-CHHHHHHHHHHHHHHHHHcC---------------CCCCCHHHHHHHHHHHH
Confidence 3345 34555667777776664331 13578888887776664
No 103
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.49 E-value=1.1e-12 Score=153.54 Aligned_cols=213 Identities=18% Similarity=0.255 Sum_probs=133.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhcc
Q 001735 766 KGILLFGPPGTGKTLLAKALATEA-----GANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGAR 840 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~el-----g~~fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r 840 (1019)
++++||||+|+|||+|++|+|+++ +..++++++.+++..+.......-..-|....+..+.+|+|||++.+.+..
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~~ 210 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGKT 210 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCcH
Confidence 469999999999999999999986 467889998877655433221111123443344468999999999886432
Q ss_pred CCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCC---CcHHHHhhCC--CCcccCCCCHHHHHHHHHHHHhc
Q 001735 841 GGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFD---LDDAVIRRLP--RRIYVDLPDAENRMKILRIFLAH 915 (1019)
Q Consensus 841 ~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~---LD~aLlrRFd--~~I~V~lPd~eeR~eILk~~L~~ 915 (1019)
. ...+|+..++.+.. ..+.+||++...|.. +.+.+.+||. ..+.+.+|+.+.|..|++..+..
T Consensus 211 ~----------~q~elf~~~n~l~~--~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~ 278 (440)
T PRK14088 211 G----------VQTELFHTFNELHD--SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEI 278 (440)
T ss_pred H----------HHHHHHHHHHHHHH--cCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHh
Confidence 1 11223333333321 224556655566655 5567888985 35668899999999999998875
Q ss_pred cCCC-CccCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHHhhCCCcc-cch
Q 001735 916 ESLE-SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQSKAKVGPSVA-YDA 993 (1019)
Q Consensus 916 ~~l~-~dvdl~~LA~~TeG~SgaDL~~L~~~Aa~~Airr~l~~~~~~~~~~~~~~~~pLT~eDF~~Al~kv~PS~s-~~~ 993 (1019)
..+. ++..+..||....| +.++|..++..-...+... .++||++...++++.+..... ...
T Consensus 279 ~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~~~~----------------~~~it~~~a~~~L~~~~~~~~~~~~ 341 (440)
T PRK14088 279 EHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKETT----------------GEEVDLKEAILLLKDFIKPNRVKAM 341 (440)
T ss_pred cCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHHHHHHHh----------------CCCCCHHHHHHHHHHHhccccccCC
Confidence 4443 33346777877765 6677777766543222111 156888888888877632111 111
Q ss_pred hcHHH-HHHHHHHhC
Q 001735 994 ASMNE-LRKWNEQYG 1007 (1019)
Q Consensus 994 ~~m~~-lvkW~digG 1007 (1019)
..++. +..-.+.||
T Consensus 342 i~~~~I~~~V~~~~~ 356 (440)
T PRK14088 342 DPIDELIEIVAKVTG 356 (440)
T ss_pred CCHHHHHHHHHHHcC
Confidence 22333 345667776
No 104
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=7.8e-13 Score=157.27 Aligned_cols=184 Identities=19% Similarity=0.190 Sum_probs=133.3
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 792 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~-------------- 792 (1019)
.+|+||+|++.+++.|...+.. .+.+..+||+||+|||||++|+++|+.+++.
T Consensus 13 ~~f~divGq~~v~~~L~~~~~~-------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 79 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNALDQ-------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENC 79 (509)
T ss_pred CCHHHhcCCHHHHHHHHHHHHh-------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHH
Confidence 5799999999999999998843 1234568999999999999999999998652
Q ss_pred ----------EEEEeccccchhhhhhHHHHHHHHHHHHHh----cCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHh
Q 001735 793 ----------FISITGSTLTSKWFGDAEKLTKALFSFASK----LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 858 (1019)
Q Consensus 793 ----------fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark----~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~ 858 (1019)
++.++++.- .....++.+...+.. ....|+||||+|.|.. ...+.|+.
T Consensus 80 ~~i~~g~~~d~~eidaas~------~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~------------~a~naLLk 141 (509)
T PRK14958 80 REIDEGRFPDLFEVDAASR------TKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG------------HSFNALLK 141 (509)
T ss_pred HHHhcCCCceEEEEccccc------CCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH------------HHHHHHHH
Confidence 455554321 112224444433322 2346999999999842 22466777
Q ss_pred hhccccccCCCcEEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCC-CccCHHHHHHHhcCCCHH
Q 001735 859 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGS 937 (1019)
Q Consensus 859 ~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeG~Sga 937 (1019)
.|+.. ...+.+|.+|+.+..+.+.+++|+ ..+.+..++.++....++..+..+++. ++..+..|+..+.| +.+
T Consensus 142 ~LEep----p~~~~fIlattd~~kl~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-slR 215 (509)
T PRK14958 142 TLEEP----PSHVKFILATTDHHKLPVTVLSRC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG-SVR 215 (509)
T ss_pred HHhcc----CCCeEEEEEECChHhchHHHHHHh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHH
Confidence 66553 235777777788888988999999 677898889999889988888877654 33346778888776 778
Q ss_pred HHHHHHHHHH
Q 001735 938 DLKNLCIAAA 947 (1019)
Q Consensus 938 DL~~L~~~Aa 947 (1019)
++.+++..++
T Consensus 216 ~al~lLdq~i 225 (509)
T PRK14958 216 DALSLLDQSI 225 (509)
T ss_pred HHHHHHHHHH
Confidence 8888887664
No 105
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.49 E-value=7e-13 Score=155.38 Aligned_cols=216 Identities=19% Similarity=0.248 Sum_probs=135.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccC
Q 001735 765 CKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARG 841 (1019)
Q Consensus 765 ~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~ 841 (1019)
.++++||||+|+|||+|++|+++++ +..++++++..+...+...........|.... ..+.+|+||||+.+.++..
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~~ 219 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKGA 219 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCChh
Confidence 3579999999999999999999986 78899998877655443322211122344433 3568999999999854321
Q ss_pred CCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCC---CCcHHHHhhCC--CCcccCCCCHHHHHHHHHHHHhcc
Q 001735 842 GAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPF---DLDDAVIRRLP--RRIYVDLPDAENRMKILRIFLAHE 916 (1019)
Q Consensus 842 ~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~---~LD~aLlrRFd--~~I~V~lPd~eeR~eILk~~L~~~ 916 (1019)
...+|+..++.+.. ..+.+|++++..|. .+++.+++||. ..+.++.|+.++|..|++..+...
T Consensus 220 ----------~qeelf~l~N~l~~--~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~ 287 (445)
T PRK12422 220 ----------TQEEFFHTFNSLHT--EGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEAL 287 (445)
T ss_pred ----------hHHHHHHHHHHHHH--CCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHc
Confidence 11223333322221 12345555555554 46789999996 567778899999999999988876
Q ss_pred CCC-CccCHHHHHHHhcCCCHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHHhhCCCcccchh
Q 001735 917 SLE-SGFQFNELANATEGYSGSDLKNLCIAAAYR-PVQELLEEERKRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAYDAA 994 (1019)
Q Consensus 917 ~l~-~dvdl~~LA~~TeG~SgaDL~~L~~~Aa~~-Airr~l~~~~~~~~~~~~~~~~pLT~eDF~~Al~kv~PS~s~~~~ 994 (1019)
++. ++..+..||....+ ..++|..++...+.. |...+ ...+||++++++++..+.........
T Consensus 288 ~~~l~~evl~~la~~~~~-dir~L~g~l~~l~~~~a~~~~--------------~~~~i~~~~~~~~l~~~~~~~~~~~~ 352 (445)
T PRK12422 288 SIRIEETALDFLIEALSS-NVKSLLHALTLLAKRVAYKKL--------------SHQLLYVDDIKALLHDVLEAAESVRL 352 (445)
T ss_pred CCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHh--------------hCCCCCHHHHHHHHHHhhhcccCCCC
Confidence 543 23335556766654 566777666655322 22221 11579999999999876322111111
Q ss_pred cHH-HHHHHHHHhCC
Q 001735 995 SMN-ELRKWNEQYGE 1008 (1019)
Q Consensus 995 ~m~-~lvkW~digG~ 1008 (1019)
.+. =...|.+.||.
T Consensus 353 t~~~I~~~Va~~~~v 367 (445)
T PRK12422 353 TPSKIIRAVAQYYGV 367 (445)
T ss_pred CHHHHHHHHHHHhCC
Confidence 222 35589999993
No 106
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.48 E-value=5.4e-13 Score=159.60 Aligned_cols=213 Identities=21% Similarity=0.266 Sum_probs=139.6
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA----------GANFISI 796 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~el----------g~~fi~I 796 (1019)
.+|+++.|.+..++.++..+.. ..+.+|||+||||||||++|+++++.+ +.+|+.+
T Consensus 62 ~~f~~iiGqs~~i~~l~~al~~--------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~i 127 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAALCG--------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEI 127 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHHhC--------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEE
Confidence 5799999999999988765411 123579999999999999999998753 3689999
Q ss_pred eccccc-------hhhhhhHHHHH---HHHHH----------HHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHH
Q 001735 797 TGSTLT-------SKWFGDAEKLT---KALFS----------FASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEF 856 (1019)
Q Consensus 797 s~seL~-------s~~~Ge~e~~I---~~lF~----------~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~L 856 (1019)
+|.... ....+.....+ ...|. ...+....+||||||+.|... .. +.|
T Consensus 128 d~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~--------~q----~~L 195 (531)
T TIGR02902 128 DATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPV--------QM----NKL 195 (531)
T ss_pred ccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHH--------HH----HHH
Confidence 986421 11111100000 00010 011223579999999998432 22 223
Q ss_pred Hhhhccc-------------------------cccCCCcEEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHH
Q 001735 857 MSAWDGL-------------------------RSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRI 911 (1019)
Q Consensus 857 L~~Ldgl-------------------------~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~ 911 (1019)
+..++.- ...+.+-.+|++||+.|+.+++++++|| ..+.++.++.+++.+|++.
T Consensus 196 L~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~-~~I~f~pL~~eei~~Il~~ 274 (531)
T TIGR02902 196 LKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRC-VEIFFRPLLDEEIKEIAKN 274 (531)
T ss_pred HHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhh-heeeCCCCCHHHHHHHHHH
Confidence 3222110 0001122455566788999999999999 5778888899999999999
Q ss_pred HHhccCCC-CccCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHH
Q 001735 912 FLAHESLE-SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQSKA 983 (1019)
Q Consensus 912 ~L~~~~l~-~dvdl~~LA~~TeG~SgaDL~~L~~~Aa~~Airr~l~~~~~~~~~~~~~~~~pLT~eDF~~Al~ 983 (1019)
.+++..+. ++..++.|+..+ .+++++.++++.|+..|..+ . ...|+.+|+..++.
T Consensus 275 ~a~k~~i~is~~al~~I~~y~--~n~Rel~nll~~Aa~~A~~~----~-----------~~~It~~dI~~vl~ 330 (531)
T TIGR02902 275 AAEKIGINLEKHALELIVKYA--SNGREAVNIVQLAAGIALGE----G-----------RKRILAEDIEWVAE 330 (531)
T ss_pred HHHHcCCCcCHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhhC----C-----------CcEEcHHHHHHHhC
Confidence 99876643 233355566554 37899999999988765432 0 13589999999986
No 107
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.47 E-value=2.1e-12 Score=154.62 Aligned_cols=211 Identities=19% Similarity=0.284 Sum_probs=133.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhcc
Q 001735 766 KGILLFGPPGTGKTLLAKALATEA-----GANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGAR 840 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~el-----g~~fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r 840 (1019)
+.++|||++|+|||+|+.||++++ +..++++++.++...+...........|..... .+.+|+||||+.+.++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~-~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYR-EMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhh-cCCEEEEehhccccCCH
Confidence 459999999999999999999986 578899999888776655433322334543333 56999999999986442
Q ss_pred CCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCC-CC---CCcHHHHhhCCCC--cccCCCCHHHHHHHHHHHHh
Q 001735 841 GGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNR-PF---DLDDAVIRRLPRR--IYVDLPDAENRMKILRIFLA 914 (1019)
Q Consensus 841 ~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~-p~---~LD~aLlrRFd~~--I~V~lPd~eeR~eILk~~L~ 914 (1019)
. ...+|+..++.+.. ..+-+|| |++. |. .+++.|++||... +.+..|+.+.|.+||+..+.
T Consensus 394 ~----------tqeeLF~l~N~l~e--~gk~III-TSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~ 460 (617)
T PRK14086 394 S----------TQEEFFHTFNTLHN--ANKQIVL-SSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 460 (617)
T ss_pred H----------HHHHHHHHHHHHHh--cCCCEEE-ecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHH
Confidence 1 11223333333321 1233444 4543 33 4788999999655 46788999999999999988
Q ss_pred ccCCC-CccCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHHhhCCCcccch
Q 001735 915 HESLE-SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAYDA 993 (1019)
Q Consensus 915 ~~~l~-~dvdl~~LA~~TeG~SgaDL~~L~~~Aa~~Airr~l~~~~~~~~~~~~~~~~pLT~eDF~~Al~kv~PS~s~~~ 993 (1019)
...+. ++.-+..|+....+ +.++|..++..-...+... .++||++..+++++.+.+......
T Consensus 461 ~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~a~a~~~----------------~~~itl~la~~vL~~~~~~~~~~~ 523 (617)
T PRK14086 461 QEQLNAPPEVLEFIASRISR-NIRELEGALIRVTAFASLN----------------RQPVDLGLTEIVLRDLIPEDSAPE 523 (617)
T ss_pred hcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhh----------------CCCCCHHHHHHHHHHhhccccCCc
Confidence 76654 33336667777664 6677776665533222111 146888888888877654322111
Q ss_pred hcHH-HHHHHHHHhC
Q 001735 994 ASMN-ELRKWNEQYG 1007 (1019)
Q Consensus 994 ~~m~-~lvkW~digG 1007 (1019)
.... -+..-.+.||
T Consensus 524 it~d~I~~~Va~~f~ 538 (617)
T PRK14086 524 ITAAAIMAATADYFG 538 (617)
T ss_pred CCHHHHHHHHHHHhC
Confidence 1222 2335566776
No 108
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.47 E-value=6.4e-13 Score=166.47 Aligned_cols=185 Identities=25% Similarity=0.342 Sum_probs=137.9
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA----------GANFISI 796 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~el----------g~~fi~I 796 (1019)
-.|+.++|.++.+..+.+.+.. +..+++||+||||||||++|+++|..+ +.+++.+
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~r--------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l 241 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILGR--------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL 241 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHcc--------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 3578899999999998887632 233579999999999999999999986 4789999
Q ss_pred eccccc--hhhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEE
Q 001735 797 TGSTLT--SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILIL 874 (1019)
Q Consensus 797 s~seL~--s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVI 874 (1019)
++..+. .+|.|+.+..++.+|..+....++||||||||.|.+.......... .+.|...+ ....+.+|
T Consensus 242 ~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~----a~lLkp~l------~rg~l~~I 311 (821)
T CHL00095 242 DIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDA----ANILKPAL------ARGELQCI 311 (821)
T ss_pred eHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccH----HHHhHHHH------hCCCcEEE
Confidence 998876 4678999999999999998888999999999999876543221111 12222222 23468889
Q ss_pred EecCCCC-----CCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhc----cCCC-CccCHHHHHHHhcCCCH
Q 001735 875 GATNRPF-----DLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAH----ESLE-SGFQFNELANATEGYSG 936 (1019)
Q Consensus 875 aTTN~p~-----~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~----~~l~-~dvdl~~LA~~TeG~Sg 936 (1019)
|+|+..+ ..|+++.+||. .+.++.|+.++...|++.+... ..+. ++..+..++..+.+|.+
T Consensus 312 gaTt~~ey~~~ie~D~aL~rRf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~ 382 (821)
T CHL00095 312 GATTLDEYRKHIEKDPALERRFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIA 382 (821)
T ss_pred EeCCHHHHHHHHhcCHHHHhcce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Confidence 8887653 47899999995 6789999999999998865432 2221 33346677777777654
No 109
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=1.1e-12 Score=161.13 Aligned_cols=184 Identities=23% Similarity=0.256 Sum_probs=131.5
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 792 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~-------------- 792 (1019)
.+|++|+|++.++..|+.++.. -+.++.+||+||||||||++|+++|+.+++.
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~-------------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC 79 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQ-------------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSC 79 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHh-------------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHH
Confidence 5799999999999999988743 1234567999999999999999999998653
Q ss_pred ----------EEEEeccccchhhhhhHHHHHHHHHHHHH----hcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHh
Q 001735 793 ----------FISITGSTLTSKWFGDAEKLTKALFSFAS----KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 858 (1019)
Q Consensus 793 ----------fi~Is~seL~s~~~Ge~e~~I~~lF~~Ar----k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~ 858 (1019)
++.++..+ ......++.+...+. .....||||||+|.|. ....+.|+.
T Consensus 80 ~~i~~g~~~DviEidAas------~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT------------~eAqNALLK 141 (944)
T PRK14949 80 VEIAQGRFVDLIEVDAAS------RTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS------------RSSFNALLK 141 (944)
T ss_pred HHHhcCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC------------HHHHHHHHH
Confidence 11122211 011222344433332 2234699999999983 234567777
Q ss_pred hhccccccCCCcEEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCC-CccCHHHHHHHhcCCCHH
Q 001735 859 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGS 937 (1019)
Q Consensus 859 ~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeG~Sga 937 (1019)
.|+.- ...+.+|++|+.+..|.+.|++|+ ..+.|..++.++...+|+..+..+.+. .+..+..|+..+.| +.+
T Consensus 142 tLEEP----P~~vrFILaTTe~~kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d~R 215 (944)
T PRK14949 142 TLEEP----PEHVKFLLATTDPQKLPVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-SMR 215 (944)
T ss_pred HHhcc----CCCeEEEEECCCchhchHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 77542 345777777888888999999999 778999999999999999988775543 33346778888887 678
Q ss_pred HHHHHHHHHH
Q 001735 938 DLKNLCIAAA 947 (1019)
Q Consensus 938 DL~~L~~~Aa 947 (1019)
++.++|..|.
T Consensus 216 ~ALnLLdQal 225 (944)
T PRK14949 216 DALSLTDQAI 225 (944)
T ss_pred HHHHHHHHHH
Confidence 8888886554
No 110
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.47 E-value=1.1e-12 Score=158.76 Aligned_cols=184 Identities=24% Similarity=0.277 Sum_probs=132.7
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 792 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~-------------- 792 (1019)
.+|++|+|++.+++.|...+.. + +.++.+||+||+|+|||++|+++|+.+++.
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~-----------~--rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C 79 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDL-----------G--RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNC 79 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-----------C--CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHH
Confidence 5799999999999999988743 1 233568999999999999999999998652
Q ss_pred ----------EEEEeccccchhhhhhHHHHHHHHHHHHH----hcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHh
Q 001735 793 ----------FISITGSTLTSKWFGDAEKLTKALFSFAS----KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 858 (1019)
Q Consensus 793 ----------fi~Is~seL~s~~~Ge~e~~I~~lF~~Ar----k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~ 858 (1019)
++.++...- .....++.+...+. .....|+||||+|.|. ....+.||.
T Consensus 80 ~~i~~g~~~D~ieidaas~------~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls------------~~a~NALLK 141 (647)
T PRK07994 80 REIEQGRFVDLIEIDAASR------TKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS------------RHSFNALLK 141 (647)
T ss_pred HHHHcCCCCCceeeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC------------HHHHHHHHH
Confidence 333433220 01122333333322 2345699999999984 233567777
Q ss_pred hhccccccCCCcEEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCC-CccCHHHHHHHhcCCCHH
Q 001735 859 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGS 937 (1019)
Q Consensus 859 ~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeG~Sga 937 (1019)
.|+.- ...+.+|.+|+.+..|.+.+++|| ..+.|..++.++...+|+.++..+++. ++..+..|+..+.| +.+
T Consensus 142 tLEEP----p~~v~FIL~Tt~~~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G-s~R 215 (647)
T PRK07994 142 TLEEP----PEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADG-SMR 215 (647)
T ss_pred HHHcC----CCCeEEEEecCCccccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 77542 346777777888899999999998 788999999999999999988776654 33446778888877 667
Q ss_pred HHHHHHHHHH
Q 001735 938 DLKNLCIAAA 947 (1019)
Q Consensus 938 DL~~L~~~Aa 947 (1019)
+..+++..|.
T Consensus 216 ~Al~lldqai 225 (647)
T PRK07994 216 DALSLTDQAI 225 (647)
T ss_pred HHHHHHHHHH
Confidence 7777776554
No 111
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.47 E-value=6e-13 Score=154.35 Aligned_cols=234 Identities=24% Similarity=0.323 Sum_probs=150.4
Q ss_pred CCCCCccccc-ccChHHHHHHHHHHHHcccCCchhhcc--CCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 001735 722 PGEIGVRFDD-IGALEDVKKALNELVILPMRRPDLFSR--GNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITG 798 (1019)
Q Consensus 722 ~~e~~vtfdD-IgGle~vk~~L~e~V~~pL~~pelf~~--~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~ 798 (1019)
|.++...+++ |+|++.+++.|...+..+..+...... .....+..++||+||||||||++|+++|..++.+|+.+++
T Consensus 62 p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~ 141 (412)
T PRK05342 62 PKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADA 141 (412)
T ss_pred HHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecch
Confidence 3444455654 899999999998887654333211100 0112245789999999999999999999999999999999
Q ss_pred cccch-hhhhhH-HHHHHHHHHH----HHhcCCeEEEeccchhhhhccCCCc-hh-HHHHHHHHHHHhhhcccc------
Q 001735 799 STLTS-KWFGDA-EKLTKALFSF----ASKLAPVIIFVDEVDSLLGARGGAF-EH-EATRRMRNEFMSAWDGLR------ 864 (1019)
Q Consensus 799 seL~s-~~~Ge~-e~~I~~lF~~----Ark~~PsIIfIDEID~L~~~r~~~~-~~-e~~~ril~~LL~~Ldgl~------ 864 (1019)
..+.. .|.|.. +..+..++.. ..+..++||||||||.+.....+.. .. .....+.+.||..|++-.
T Consensus 142 ~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~ 221 (412)
T PRK05342 142 TTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQ 221 (412)
T ss_pred hhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCC
Confidence 88753 566654 4445555443 2345789999999999976532211 11 111246677888887531
Q ss_pred ---ccCCCcEEEEEecCCCC----------------------------------------------------CCcHHHHh
Q 001735 865 ---SKESQKILILGATNRPF----------------------------------------------------DLDDAVIR 889 (1019)
Q Consensus 865 ---~~~~~~VLVIaTTN~p~----------------------------------------------------~LD~aLlr 889 (1019)
..+....++|.|+|-.+ -+.|+++.
T Consensus 222 gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflg 301 (412)
T PRK05342 222 GGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIG 301 (412)
T ss_pred CCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhC
Confidence 11122345555554311 03567777
Q ss_pred hCCCCcccCCCCHHHHHHHHHH----HHh-------ccCCC---CccCHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHH
Q 001735 890 RLPRRIYVDLPDAENRMKILRI----FLA-------HESLE---SGFQFNELANA--TEGYSGSDLKNLCIAAAYRPVQE 953 (1019)
Q Consensus 890 RFd~~I~V~lPd~eeR~eILk~----~L~-------~~~l~---~dvdl~~LA~~--TeG~SgaDL~~L~~~Aa~~Airr 953 (1019)
|++.++.+...+.++..+|+.. +++ ..++. ++..+..||+. ..++-.+.|+.+++......+.+
T Consensus 302 Rld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~ 381 (412)
T PRK05342 302 RLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFE 381 (412)
T ss_pred CCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHh
Confidence 9999999999999999999872 332 12221 22235667764 34556788888888877776665
Q ss_pred HH
Q 001735 954 LL 955 (1019)
Q Consensus 954 ~l 955 (1019)
+.
T Consensus 382 ~p 383 (412)
T PRK05342 382 LP 383 (412)
T ss_pred cc
Confidence 53
No 112
>PRK04195 replication factor C large subunit; Provisional
Probab=99.46 E-value=7.8e-13 Score=156.64 Aligned_cols=184 Identities=26% Similarity=0.367 Sum_probs=129.1
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhh
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWF 806 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s~~~ 806 (1019)
.+|++|+|.+++++.|..++.... ++ .+++++||+||||||||++|+++|++++.+++.+++++....
T Consensus 11 ~~l~dlvg~~~~~~~l~~~l~~~~-------~g---~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~-- 78 (482)
T PRK04195 11 KTLSDVVGNEKAKEQLREWIESWL-------KG---KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTA-- 78 (482)
T ss_pred CCHHHhcCCHHHHHHHHHHHHHHh-------cC---CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccH--
Confidence 579999999999999999885422 11 246789999999999999999999999999999998765421
Q ss_pred hhHHHHHHHHHHHHHh------cCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCC
Q 001735 807 GDAEKLTKALFSFASK------LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP 880 (1019)
Q Consensus 807 Ge~e~~I~~lF~~Ark------~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p 880 (1019)
..+..+...+.. ..+.||+|||+|.+..... ....+.|+..++. .+..+|+++|.+
T Consensus 79 ----~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d--------~~~~~aL~~~l~~------~~~~iIli~n~~ 140 (482)
T PRK04195 79 ----DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED--------RGGARAILELIKK------AKQPIILTANDP 140 (482)
T ss_pred ----HHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc--------hhHHHHHHHHHHc------CCCCEEEeccCc
Confidence 122222222211 2468999999999864211 1123445544432 123466678888
Q ss_pred CCCcH-HHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCC-CccCHHHHHHHhcCCCHHHHHHHHHH
Q 001735 881 FDLDD-AVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLKNLCIA 945 (1019)
Q Consensus 881 ~~LD~-aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeG~SgaDL~~L~~~ 945 (1019)
..+.. .+++|+ ..+.|+.|+..+...+++.++...++. ++..+..|+..+.| |++.+++.
T Consensus 141 ~~~~~k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain~ 202 (482)
T PRK04195 141 YDPSLRELRNAC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAIND 202 (482)
T ss_pred cccchhhHhccc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHH
Confidence 88887 666666 688999999999999999999876654 33346667776654 55555543
No 113
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.46 E-value=9.7e-13 Score=150.94 Aligned_cols=178 Identities=26% Similarity=0.366 Sum_probs=132.6
Q ss_pred ccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch-hhhh-hH
Q 001735 732 IGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS-KWFG-DA 809 (1019)
Q Consensus 732 IgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s-~~~G-e~ 809 (1019)
|+|+++.+..+...+.....+..+.....--.++++|||+||||||||++|+++|..++.+|+.+++..+.. .|.| +.
T Consensus 14 IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dv 93 (441)
T TIGR00390 14 IIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 93 (441)
T ss_pred ccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCH
Confidence 789999999998888765444332211111224589999999999999999999999999999999988763 6777 56
Q ss_pred HHHHHHHHHHHH--------------------------------------------------------------------
Q 001735 810 EKLTKALFSFAS-------------------------------------------------------------------- 821 (1019)
Q Consensus 810 e~~I~~lF~~Ar-------------------------------------------------------------------- 821 (1019)
+..++.+|..|.
T Consensus 94 E~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~ 173 (441)
T TIGR00390 94 ESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEID 173 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEEe
Confidence 777777766650
Q ss_pred -----------------------------------------------------------------------hcCCeEEEe
Q 001735 822 -----------------------------------------------------------------------KLAPVIIFV 830 (1019)
Q Consensus 822 -----------------------------------------------------------------------k~~PsIIfI 830 (1019)
..+-.||||
T Consensus 174 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVfi 253 (441)
T TIGR00390 174 VSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIFI 253 (441)
T ss_pred ecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 013469999
Q ss_pred ccchhhhhccCCCchhHHHHHHHHHHHhhhcccc------ccCCCcEEEEEec----CCCCCCcHHHHhhCCCCcccCCC
Q 001735 831 DEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR------SKESQKILILGAT----NRPFDLDDAVIRRLPRRIYVDLP 900 (1019)
Q Consensus 831 DEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~------~~~~~~VLVIaTT----N~p~~LD~aLlrRFd~~I~V~lP 900 (1019)
||||.++....+........-+.+.||..++|-. .-...+|++|++. ..|.+|-|.|.-||+..+.+..+
T Consensus 254 DEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~L 333 (441)
T TIGR00390 254 DEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPIRVELQAL 333 (441)
T ss_pred EchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCCC
Confidence 9999998654322112222346778888887732 2245678999876 46788999999999999999999
Q ss_pred CHHHHHHHH
Q 001735 901 DAENRMKIL 909 (1019)
Q Consensus 901 d~eeR~eIL 909 (1019)
+.++...||
T Consensus 334 ~~edL~rIL 342 (441)
T TIGR00390 334 TTDDFERIL 342 (441)
T ss_pred CHHHHHHHh
Confidence 999998887
No 114
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.46 E-value=7.6e-13 Score=166.31 Aligned_cols=183 Identities=24% Similarity=0.381 Sum_probs=133.5
Q ss_pred ccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 001735 728 RFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA----------GANFISIT 797 (1019)
Q Consensus 728 tfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~el----------g~~fi~Is 797 (1019)
.++.++|.+.....+.+.+.. +...+++|+||||||||++|+++|..+ +.+++.++
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r--------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~ 236 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALD 236 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhc--------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEee
Confidence 577899999877776665422 123568999999999999999999986 67888888
Q ss_pred ccccc--hhhhhhHHHHHHHHHHHHHhc-CCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEE
Q 001735 798 GSTLT--SKWFGDAEKLTKALFSFASKL-APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILIL 874 (1019)
Q Consensus 798 ~seL~--s~~~Ge~e~~I~~lF~~Ark~-~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVI 874 (1019)
+..+. ..|.|+.+..++.+|..+... .+.||||||||.|.+......... ..+.|...+ ....+.+|
T Consensus 237 ~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d----~~~~Lk~~l------~~g~i~~I 306 (852)
T TIGR03346 237 MGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMD----AGNMLKPAL------ARGELHCI 306 (852)
T ss_pred HHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhH----HHHHhchhh------hcCceEEE
Confidence 88775 457888999999999988664 589999999999986443221111 222222222 23568899
Q ss_pred EecCCC-----CCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCCCc-----cCHHHHHHHhcCCC
Q 001735 875 GATNRP-----FDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLESG-----FQFNELANATEGYS 935 (1019)
Q Consensus 875 aTTN~p-----~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~~d-----vdl~~LA~~TeG~S 935 (1019)
|+|+.. ..+|+++.|||. .+.++.|+.+++..|++.+......... ..+..++..+.+|-
T Consensus 307 gaTt~~e~r~~~~~d~al~rRf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi 376 (852)
T TIGR03346 307 GATTLDEYRKYIEKDAALERRFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYI 376 (852)
T ss_pred EeCcHHHHHHHhhcCHHHHhcCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccc
Confidence 998766 358999999995 6899999999999999987665444322 23555566666554
No 115
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.46 E-value=5.6e-12 Score=144.81 Aligned_cols=223 Identities=19% Similarity=0.254 Sum_probs=144.5
Q ss_pred cccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccch
Q 001735 729 FDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA-----GANFISITGSTLTS 803 (1019)
Q Consensus 729 fdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~el-----g~~fi~Is~seL~s 803 (1019)
.+.+.|.++..+.|...+...+. . ..+.+++|+||||||||++++.+++++ ++.+++++|....+
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~-------~---~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~ 98 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALR-------G---SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT 98 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhC-------C---CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence 34678899988888887743221 1 123569999999999999999999887 57889998865422
Q ss_pred hh----------hh--------hHHHHHHHHHHHHHh-cCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcccc
Q 001735 804 KW----------FG--------DAEKLTKALFSFASK-LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR 864 (1019)
Q Consensus 804 ~~----------~G--------e~e~~I~~lF~~Ark-~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~ 864 (1019)
.+ .+ .....+..++..... ..+.||+|||+|.+.... . ...+..|+..+...
T Consensus 99 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~-~-------~~~l~~l~~~~~~~- 169 (394)
T PRK00411 99 RYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE-G-------NDVLYSLLRAHEEY- 169 (394)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC-C-------chHHHHHHHhhhcc-
Confidence 10 01 112333333333332 346899999999986221 1 12345555554443
Q ss_pred ccCCCcEEEEEecCCCC---CCcHHHHhhCC-CCcccCCCCHHHHHHHHHHHHhcc---CCCCccCHHHHHHHhcCCC--
Q 001735 865 SKESQKILILGATNRPF---DLDDAVIRRLP-RRIYVDLPDAENRMKILRIFLAHE---SLESGFQFNELANATEGYS-- 935 (1019)
Q Consensus 865 ~~~~~~VLVIaTTN~p~---~LD~aLlrRFd-~~I~V~lPd~eeR~eILk~~L~~~---~l~~dvdl~~LA~~TeG~S-- 935 (1019)
...++.+|+++|... .+++.+.+||. ..+.+++++.++..+|++..+... ...++..++.+++.+.+.+
T Consensus 170 --~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd 247 (394)
T PRK00411 170 --PGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGD 247 (394)
T ss_pred --CCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCc
Confidence 223688888887664 47788888874 568899999999999999887532 1223334667777775432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHHhhCC
Q 001735 936 GSDLKNLCIAAAYRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQSKAKVGP 987 (1019)
Q Consensus 936 gaDL~~L~~~Aa~~Airr~l~~~~~~~~~~~~~~~~pLT~eDF~~Al~kv~P 987 (1019)
.+.+..+|..|+..|..+ ....|+.+|+..|+..+.+
T Consensus 248 ~r~a~~ll~~a~~~a~~~---------------~~~~I~~~~v~~a~~~~~~ 284 (394)
T PRK00411 248 ARVAIDLLRRAGLIAERE---------------GSRKVTEEDVRKAYEKSEI 284 (394)
T ss_pred HHHHHHHHHHHHHHHHHc---------------CCCCcCHHHHHHHHHHHHH
Confidence 344556676666554432 1145899999988888744
No 116
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.45 E-value=1.9e-12 Score=153.48 Aligned_cols=186 Identities=23% Similarity=0.252 Sum_probs=136.1
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 792 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~-------------- 792 (1019)
.+|+|++|++.+.+.|...+.. .+.+.++||+||||||||++|+++|+.+++.
T Consensus 18 ~~f~dliGq~~vv~~L~~ai~~-------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~ 84 (507)
T PRK06645 18 SNFAELQGQEVLVKVLSYTILN-------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQ 84 (507)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCC
Confidence 5799999999999999887633 1335689999999999999999999998652
Q ss_pred --------------EEEEeccccchhhhhhHHHHHHHHHHHHHhc----CCeEEEeccchhhhhccCCCchhHHHHHHHH
Q 001735 793 --------------FISITGSTLTSKWFGDAEKLTKALFSFASKL----APVIIFVDEVDSLLGARGGAFEHEATRRMRN 854 (1019)
Q Consensus 793 --------------fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark~----~PsIIfIDEID~L~~~r~~~~~~e~~~ril~ 854 (1019)
++.+++.+ ......++.+++.+... ...|+||||+|.+.. ...+
T Consensus 85 C~~C~~i~~~~h~Dv~eidaas------~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~------------~a~n 146 (507)
T PRK06645 85 CTNCISFNNHNHPDIIEIDAAS------KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK------------GAFN 146 (507)
T ss_pred ChHHHHHhcCCCCcEEEeeccC------CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH------------HHHH
Confidence 22222211 11234556666665432 246999999998832 2345
Q ss_pred HHHhhhccccccCCCcEEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCC-CccCHHHHHHHhcC
Q 001735 855 EFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEG 933 (1019)
Q Consensus 855 ~LL~~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeG 933 (1019)
.|+..++. +...+++|.+|+.+..+.+.+++|+ ..+.+..++.++...+++..+..+++. ++..+..|+..+.|
T Consensus 147 aLLk~LEe----pp~~~vfI~aTte~~kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G 221 (507)
T PRK06645 147 ALLKTLEE----PPPHIIFIFATTEVQKIPATIISRC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG 221 (507)
T ss_pred HHHHHHhh----cCCCEEEEEEeCChHHhhHHHHhcc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 66666653 2345777777788888999999999 578899999999999999999877754 33346778888877
Q ss_pred CCHHHHHHHHHHHHHH
Q 001735 934 YSGSDLKNLCIAAAYR 949 (1019)
Q Consensus 934 ~SgaDL~~L~~~Aa~~ 949 (1019)
+.+++.+++..++..
T Consensus 222 -slR~al~~Ldkai~~ 236 (507)
T PRK06645 222 -SARDAVSILDQAASM 236 (507)
T ss_pred -CHHHHHHHHHHHHHh
Confidence 788888888777543
No 117
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=2.5e-12 Score=151.54 Aligned_cols=185 Identities=20% Similarity=0.222 Sum_probs=136.7
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA--------------- 791 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~--------------- 791 (1019)
.+|+||+|++.+.+.|...+.. -+.++++||+||+|+|||++|+.+|+.+++
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~-------------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C 76 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTL-------------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNC 76 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHH
Confidence 5899999999999999887643 134578999999999999999999997632
Q ss_pred ---------cEEEEeccccchhhhhhHHHHHHHHHHHHHhc----CCeEEEeccchhhhhccCCCchhHHHHHHHHHHHh
Q 001735 792 ---------NFISITGSTLTSKWFGDAEKLTKALFSFASKL----APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 858 (1019)
Q Consensus 792 ---------~fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark~----~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~ 858 (1019)
.++.+++++-. .-..++.+.+.+... ...|++|||+|.|.. ...+.|+.
T Consensus 77 ~~i~~~~~~Dv~eidaas~~------~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~------------~A~NaLLK 138 (491)
T PRK14964 77 ISIKNSNHPDVIEIDAASNT------SVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN------------SAFNALLK 138 (491)
T ss_pred HHHhccCCCCEEEEecccCC------CHHHHHHHHHHHHhccccCCceEEEEeChHhCCH------------HHHHHHHH
Confidence 34556554321 123355555554332 346999999998832 23566777
Q ss_pred hhccccccCCCcEEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCC-CccCHHHHHHHhcCCCHH
Q 001735 859 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGS 937 (1019)
Q Consensus 859 ~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeG~Sga 937 (1019)
.++.. ...+.+|.+|+.+..+.+.+++|+ ..+.+..++.++...+++..+..+++. ++..+..|+..+.| +.+
T Consensus 139 ~LEeP----p~~v~fIlatte~~Kl~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-slR 212 (491)
T PRK14964 139 TLEEP----APHVKFILATTEVKKIPVTIISRC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-SMR 212 (491)
T ss_pred HHhCC----CCCeEEEEEeCChHHHHHHHHHhh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 76653 345777777788888999999999 678999999999999999998877654 34457778888876 788
Q ss_pred HHHHHHHHHHH
Q 001735 938 DLKNLCIAAAY 948 (1019)
Q Consensus 938 DL~~L~~~Aa~ 948 (1019)
++.+++..++.
T Consensus 213 ~alslLdqli~ 223 (491)
T PRK14964 213 NALFLLEQAAI 223 (491)
T ss_pred HHHHHHHHHHH
Confidence 88888877654
No 118
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.45 E-value=1.8e-12 Score=149.66 Aligned_cols=186 Identities=18% Similarity=0.218 Sum_probs=125.5
Q ss_pred ccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---------------
Q 001735 728 RFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN--------------- 792 (1019)
Q Consensus 728 tfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~--------------- 792 (1019)
.|++|+|++.+++.|+..+......+..+ + .+.++++||+||+|+|||++|+++|+.+.+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~---~-~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~ 78 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAA---G-SGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRT 78 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccccccc---C-CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Confidence 58999999999999999997643322211 1 2345789999999999999999999987442
Q ss_pred --------EEEEeccccchhhhhhHHHHHHHHHHHHHhc----CCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhh
Q 001735 793 --------FISITGSTLTSKWFGDAEKLTKALFSFASKL----APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAW 860 (1019)
Q Consensus 793 --------fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark~----~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~L 860 (1019)
+..+.+.. .. -.-..++.++..+... ...|+||||+|.+... ..+.|+..|
T Consensus 79 ~~~~~hpD~~~i~~~~-~~----i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~------------aanaLLk~L 141 (394)
T PRK07940 79 VLAGTHPDVRVVAPEG-LS----IGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTER------------AANALLKAV 141 (394)
T ss_pred HhcCCCCCEEEecccc-cc----CCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH------------HHHHHHHHh
Confidence 12222211 00 1123466777766543 2469999999998422 235677766
Q ss_pred ccccccCCCcEEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCCCccCHHHHHHHhcCCCHHHHH
Q 001735 861 DGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLK 940 (1019)
Q Consensus 861 dgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeG~SgaDL~ 940 (1019)
+.- +. ++++|.+|+.++.+.+.+++|+ ..+.|+.|+.++..+++... ..+. ......++..+.|..+..+.
T Consensus 142 Eep---~~-~~~fIL~a~~~~~llpTIrSRc-~~i~f~~~~~~~i~~~L~~~---~~~~-~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 142 EEP---PP-RTVWLLCAPSPEDVLPTIRSRC-RHVALRTPSVEAVAEVLVRR---DGVD-PETARRAARASQGHIGRARR 212 (394)
T ss_pred hcC---CC-CCeEEEEECChHHChHHHHhhC-eEEECCCCCHHHHHHHHHHh---cCCC-HHHHHHHHHHcCCCHHHHHH
Confidence 542 23 3444445555899999999999 68999999999888777632 2332 33456788889998776655
Q ss_pred HHH
Q 001735 941 NLC 943 (1019)
Q Consensus 941 ~L~ 943 (1019)
-+.
T Consensus 213 l~~ 215 (394)
T PRK07940 213 LAT 215 (394)
T ss_pred Hhc
Confidence 443
No 119
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.45 E-value=2e-12 Score=156.09 Aligned_cols=185 Identities=22% Similarity=0.228 Sum_probs=135.5
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 792 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~-------------- 792 (1019)
.+|+||+|++.+++.|...+.. -+.++.+||+||+|+|||++|+++|+.+++.
T Consensus 13 ~tFddIIGQe~vv~~L~~ai~~-------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sC 79 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNALDE-------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSC 79 (709)
T ss_pred CCHHHHcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHH
Confidence 5799999999999999998743 1345779999999999999999999987542
Q ss_pred ----------EEEEeccccchhhhhhHHHHHHHHHHHHHh----cCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHh
Q 001735 793 ----------FISITGSTLTSKWFGDAEKLTKALFSFASK----LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 858 (1019)
Q Consensus 793 ----------fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark----~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~ 858 (1019)
++.++... ......++.++..+.. ....||||||+|.|. ....+.|+.
T Consensus 80 r~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls------------~~A~NALLK 141 (709)
T PRK08691 80 TQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS------------KSAFNAMLK 141 (709)
T ss_pred HHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC------------HHHHHHHHH
Confidence 22222221 1112345555554422 234799999999873 123456777
Q ss_pred hhccccccCCCcEEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCC-CccCHHHHHHHhcCCCHH
Q 001735 859 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGS 937 (1019)
Q Consensus 859 ~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeG~Sga 937 (1019)
.|+.. ...+.+|.+|+.+..+...+++|| ..+.|..++.++...+++.++..+++. ++..+..|+..+.| +.+
T Consensus 142 tLEEP----p~~v~fILaTtd~~kL~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-slR 215 (709)
T PRK08691 142 TLEEP----PEHVKFILATTDPHKVPVTVLSRC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-SMR 215 (709)
T ss_pred HHHhC----CCCcEEEEEeCCccccchHHHHHH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-CHH
Confidence 66543 245777778888999999999999 678888999999999999999887754 33347778888876 788
Q ss_pred HHHHHHHHHHH
Q 001735 938 DLKNLCIAAAY 948 (1019)
Q Consensus 938 DL~~L~~~Aa~ 948 (1019)
++.+++..++.
T Consensus 216 dAlnLLDqaia 226 (709)
T PRK08691 216 DALSLLDQAIA 226 (709)
T ss_pred HHHHHHHHHHH
Confidence 88888877654
No 120
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.44 E-value=2.4e-12 Score=142.59 Aligned_cols=208 Identities=22% Similarity=0.351 Sum_probs=136.0
Q ss_pred cccccccChHHHHHH---HHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---EEEEeccc
Q 001735 727 VRFDDIGALEDVKKA---LNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN---FISITGST 800 (1019)
Q Consensus 727 vtfdDIgGle~vk~~---L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~---fi~Is~se 800 (1019)
.+++|.+|++....+ |+.+|+. ....+++||||||||||+||+.|+....-+ |+.+++..
T Consensus 135 ktL~dyvGQ~hlv~q~gllrs~ieq--------------~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~ 200 (554)
T KOG2028|consen 135 KTLDDYVGQSHLVGQDGLLRSLIEQ--------------NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN 200 (554)
T ss_pred chHHHhcchhhhcCcchHHHHHHHc--------------CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc
Confidence 357777777766543 4444422 234679999999999999999999988655 77776644
Q ss_pred cchhhhhhHHHHHHHHHHHHHhc-----CCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEE
Q 001735 801 LTSKWFGDAEKLTKALFSFASKL-----APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILG 875 (1019)
Q Consensus 801 L~s~~~Ge~e~~I~~lF~~Ark~-----~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIa 875 (1019)
- ..+.++.+|+.+++. ...|||||||+++....+ ..||-.+ ++..|++||
T Consensus 201 a-------~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQ------------D~fLP~V------E~G~I~lIG 255 (554)
T KOG2028|consen 201 A-------KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQ------------DTFLPHV------ENGDITLIG 255 (554)
T ss_pred c-------chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhh------------hccccee------ccCceEEEe
Confidence 2 235567777777553 358999999999843322 2444433 455788888
Q ss_pred ec--CCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhcc--------CCCC------ccCHHHHHHHhcCCCHHHH
Q 001735 876 AT--NRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHE--------SLES------GFQFNELANATEGYSGSDL 939 (1019)
Q Consensus 876 TT--N~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~--------~l~~------dvdl~~LA~~TeG~SgaDL 939 (1019)
+| |..+.|..++++|| +++.+.....++-..||...+... ++.. +--++.|+..++|-....|
T Consensus 256 ATTENPSFqln~aLlSRC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aL 334 (554)
T KOG2028|consen 256 ATTENPSFQLNAALLSRC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAAL 334 (554)
T ss_pred cccCCCccchhHHHHhcc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHH
Confidence 77 67778999999999 677788888888888888755411 1111 1125667888887555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHHhhC
Q 001735 940 KNLCIAAAYRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQSKAKVG 986 (1019)
Q Consensus 940 ~~L~~~Aa~~Airr~l~~~~~~~~~~~~~~~~pLT~eDF~~Al~kv~ 986 (1019)
..|-..+.+...|. ......+|+.+|+++++..-.
T Consensus 335 N~Lems~~m~~tr~------------g~~~~~~lSidDvke~lq~s~ 369 (554)
T KOG2028|consen 335 NALEMSLSMFCTRS------------GQSSRVLLSIDDVKEGLQRSH 369 (554)
T ss_pred HHHHHHHHHHHhhc------------CCcccceecHHHHHHHHhhcc
Confidence 43322111111111 111336799999999987654
No 121
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.44 E-value=4.9e-12 Score=148.62 Aligned_cols=222 Identities=16% Similarity=0.214 Sum_probs=139.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccchhhhhhHHH---HHHHHHHHHHhcCCeEEEeccchhhh
Q 001735 766 KGILLFGPPGTGKTLLAKALATEA-----GANFISITGSTLTSKWFGDAEK---LTKALFSFASKLAPVIIFVDEVDSLL 837 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~el-----g~~fi~Is~seL~s~~~Ge~e~---~I~~lF~~Ark~~PsIIfIDEID~L~ 837 (1019)
++++|||++|+|||+|++|+++++ +..++++++.++...+...... .+. -|.... ..+.+|+|||++.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~-~~~~~~-~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIE-QFKNEI-CQNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHH-HHHHHh-ccCCEEEEecccccc
Confidence 569999999999999999999965 5788899998877665443322 121 122212 356899999999885
Q ss_pred hccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCC---CcHHHHhhCCC--CcccCCCCHHHHHHHHHHH
Q 001735 838 GARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFD---LDDAVIRRLPR--RIYVDLPDAENRMKILRIF 912 (1019)
Q Consensus 838 ~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~---LD~aLlrRFd~--~I~V~lPd~eeR~eILk~~ 912 (1019)
++. ....+|...++.+.. ..+.+||++...|.. +++.+.+||.. .+.+..|+.++|.+|++..
T Consensus 220 ~k~----------~~~e~lf~l~N~~~~--~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 220 YKE----------KTNEIFFTIFNNFIE--NDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred CCH----------HHHHHHHHHHHHHHH--cCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence 331 112233333333321 223344444444433 67899999964 4557789999999999999
Q ss_pred HhccCC---CCccCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHHhhCCCc
Q 001735 913 LAHESL---ESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQSKAKVGPSV 989 (1019)
Q Consensus 913 L~~~~l---~~dvdl~~LA~~TeG~SgaDL~~L~~~Aa~~Airr~l~~~~~~~~~~~~~~~~pLT~eDF~~Al~kv~PS~ 989 (1019)
+...++ .++..+..||..+.| +.+.|..+|..+...+.... ..++||++.+.+++..+...-
T Consensus 288 ~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~--------------~~~~it~~~v~~~l~~~~~~~ 352 (450)
T PRK14087 288 IKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQNP--------------EEKIITIEIVSDLFRDIPTSK 352 (450)
T ss_pred HHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhccc--------------CCCCCCHHHHHHHHhhccccc
Confidence 886543 233346677877776 77888888876654332210 014689999999998874321
Q ss_pred ccchhcHH-HHHHHHHHhCC-----CCccccCCC
Q 001735 990 AYDAASMN-ELRKWNEQYGE-----GGSRRKSPF 1017 (1019)
Q Consensus 990 s~~~~~m~-~lvkW~digG~-----~g~rkk~~~ 1017 (1019)
. ...... =...-.+.||. .|++|++.+
T Consensus 353 ~-~~~t~~~I~~~Va~~~~i~~~dl~s~~R~~~i 385 (450)
T PRK14087 353 L-GILNVKKIKEVVSEKYGISVNAIDGKARSKSI 385 (450)
T ss_pred c-CCCCHHHHHHHHHHHcCCCHHHHhCCCCCccc
Confidence 1 112233 24467788883 345555443
No 122
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.43 E-value=4.9e-12 Score=134.02 Aligned_cols=185 Identities=18% Similarity=0.215 Sum_probs=118.6
Q ss_pred ccccccc--ChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 001735 727 VRFDDIG--ALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTL 801 (1019)
Q Consensus 727 vtfdDIg--Gle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL 801 (1019)
.+|+++. +.....+.+++++.. ....+++|+||+|||||+||+++++++ +.+++.+++.++
T Consensus 12 ~~~~~~~~~~~~~~~~~l~~~~~~--------------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 12 PTFDNFYAGGNAELLAALRQLAAG--------------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred hhhcCcCcCCcHHHHHHHHHHHhc--------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 4666653 466677777776521 234679999999999999999999887 578889988877
Q ss_pred chhhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCC
Q 001735 802 TSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPF 881 (1019)
Q Consensus 802 ~s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~ 881 (1019)
.... ..++... ..+.+|+|||+|.+.... .. ...+...++.... ....+|++++..+.
T Consensus 78 ~~~~--------~~~~~~~--~~~~lLvIDdi~~l~~~~------~~----~~~L~~~l~~~~~--~~~~iIits~~~~~ 135 (226)
T TIGR03420 78 AQAD--------PEVLEGL--EQADLVCLDDVEAIAGQP------EW----QEALFHLYNRVRE--AGGRLLIAGRAAPA 135 (226)
T ss_pred HHhH--------HHHHhhc--ccCCEEEEeChhhhcCCh------HH----HHHHHHHHHHHHH--cCCeEEEECCCChH
Confidence 5432 1222222 234699999999874321 00 1122222322211 12234444444443
Q ss_pred CCc---HHHHhhCC--CCcccCCCCHHHHHHHHHHHHhccCCC-CccCHHHHHHHhcCCCHHHHHHHHHHHHH
Q 001735 882 DLD---DAVIRRLP--RRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLKNLCIAAAY 948 (1019)
Q Consensus 882 ~LD---~aLlrRFd--~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeG~SgaDL~~L~~~Aa~ 948 (1019)
.++ +.+.+||. ..+.++.|+.+++..+++.++....+. ++..+..|+.... -+.+++.+++..+..
T Consensus 136 ~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~-gn~r~L~~~l~~~~~ 207 (226)
T TIGR03420 136 QLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGS-RDMGSLMALLDALDR 207 (226)
T ss_pred HCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHH
Confidence 332 77888874 678899999999999999877655443 3334677777544 478899988877554
No 123
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.42 E-value=2.1e-12 Score=148.34 Aligned_cols=178 Identities=27% Similarity=0.402 Sum_probs=132.6
Q ss_pred ccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch-hhhh-hH
Q 001735 732 IGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS-KWFG-DA 809 (1019)
Q Consensus 732 IgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s-~~~G-e~ 809 (1019)
|+|+++++..+...+....++..+......-..+.++||+||||||||+||+++|..++.+|+.+++..+.. .|.| +.
T Consensus 17 IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~ 96 (443)
T PRK05201 17 IIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 96 (443)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCH
Confidence 789999999999888654433322211111113578999999999999999999999999999999988875 6877 55
Q ss_pred HHHHHHHHHHHH--------------------------------------------------------------------
Q 001735 810 EKLTKALFSFAS-------------------------------------------------------------------- 821 (1019)
Q Consensus 810 e~~I~~lF~~Ar-------------------------------------------------------------------- 821 (1019)
+..++.+|..|.
T Consensus 97 e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~ 176 (443)
T PRK05201 97 ESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEIE 176 (443)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEEE
Confidence 777777777661
Q ss_pred --h--------------------------------------------------------------------cCCeEEEec
Q 001735 822 --K--------------------------------------------------------------------LAPVIIFVD 831 (1019)
Q Consensus 822 --k--------------------------------------------------------------------~~PsIIfID 831 (1019)
. ..-.|||||
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfiD 256 (443)
T PRK05201 177 VAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFID 256 (443)
T ss_pred ecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEE
Confidence 0 134699999
Q ss_pred cchhhhhccCCCchhHHHHHHHHHHHhhhcccc------ccCCCcEEEEEec----CCCCCCcHHHHhhCCCCcccCCCC
Q 001735 832 EVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR------SKESQKILILGAT----NRPFDLDDAVIRRLPRRIYVDLPD 901 (1019)
Q Consensus 832 EID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~------~~~~~~VLVIaTT----N~p~~LD~aLlrRFd~~I~V~lPd 901 (1019)
|||.++....+........-+.+.||..++|-. .-....|++|++. ..|.+|-|+|.-||+..+.+..++
T Consensus 257 EiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~L~ 336 (443)
T PRK05201 257 EIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPIRVELDALT 336 (443)
T ss_pred cchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCCCC
Confidence 999998664332212222346778888888732 1244679999875 467889999999999999999999
Q ss_pred HHHHHHHH
Q 001735 902 AENRMKIL 909 (1019)
Q Consensus 902 ~eeR~eIL 909 (1019)
.++...||
T Consensus 337 ~~dL~~IL 344 (443)
T PRK05201 337 EEDFVRIL 344 (443)
T ss_pred HHHHHHHh
Confidence 99998887
No 124
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=4.1e-12 Score=151.83 Aligned_cols=185 Identities=22% Similarity=0.245 Sum_probs=132.9
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 792 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~-------------- 792 (1019)
.+|+||+|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+++.
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~-------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C 79 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQ-------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSAC 79 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHc-------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 5799999999999999988743 1234668999999999999999999998652
Q ss_pred ----------EEEEeccccchhhhhhHHHHHHHHHHHHHhc----CCeEEEeccchhhhhccCCCchhHHHHHHHHHHHh
Q 001735 793 ----------FISITGSTLTSKWFGDAEKLTKALFSFASKL----APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 858 (1019)
Q Consensus 793 ----------fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark~----~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~ 858 (1019)
++.++.+. ......++.+...+... ...|+||||+|.+.. ...+.|+.
T Consensus 80 ~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~------------~a~naLLK 141 (527)
T PRK14969 80 LEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK------------SAFNAMLK 141 (527)
T ss_pred HHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH------------HHHHHHHH
Confidence 22332221 11233455555555332 246999999998842 23466777
Q ss_pred hhccccccCCCcEEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCC-CccCHHHHHHHhcCCCHH
Q 001735 859 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGS 937 (1019)
Q Consensus 859 ~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeG~Sga 937 (1019)
.++.. ...+.+|.+|+.+..+.+.+++|+ ..+.|..++.++....+...+..+++. ++..+..|+..+.| +.+
T Consensus 142 ~LEep----p~~~~fIL~t~d~~kil~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-slr 215 (527)
T PRK14969 142 TLEEP----PEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-SMR 215 (527)
T ss_pred HHhCC----CCCEEEEEEeCChhhCchhHHHHH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 76553 345677777777888888899998 788999999999999999888776654 23345677777766 678
Q ss_pred HHHHHHHHHHH
Q 001735 938 DLKNLCIAAAY 948 (1019)
Q Consensus 938 DL~~L~~~Aa~ 948 (1019)
++.+++..|..
T Consensus 216 ~al~lldqai~ 226 (527)
T PRK14969 216 DALSLLDQAIA 226 (527)
T ss_pred HHHHHHHHHHH
Confidence 88888876653
No 125
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=5.4e-12 Score=149.92 Aligned_cols=184 Identities=19% Similarity=0.235 Sum_probs=130.3
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 792 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~-------------- 792 (1019)
.+|+||+|++.+++.|..++.. .+.++.+||+||||||||++|+++|+.+.+.
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~-------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~ 77 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQ-------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL 77 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH
Confidence 5799999999999999998743 1234567999999999999999999988531
Q ss_pred ---------EEEEeccccchhhhhhHHHHHHHHHHHHHh----cCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhh
Q 001735 793 ---------FISITGSTLTSKWFGDAEKLTKALFSFASK----LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSA 859 (1019)
Q Consensus 793 ---------fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark----~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~ 859 (1019)
++.+++..- .....++.+...+.. ..+.||||||+|.+. ....+.|+..
T Consensus 78 ~i~~~~h~dv~el~~~~~------~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls------------~~a~naLLk~ 139 (504)
T PRK14963 78 AVRRGAHPDVLEIDAASN------NSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS------------KSAFNALLKT 139 (504)
T ss_pred HHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCCeEEEEECccccC------------HHHHHHHHHH
Confidence 444444311 112233444333322 245799999999763 2234566666
Q ss_pred hccccccCCCcEEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCC-CccCHHHHHHHhcCCCHHH
Q 001735 860 WDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSD 938 (1019)
Q Consensus 860 Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeG~SgaD 938 (1019)
++.. ...+++|.+|+.+..+.+.+.+|+ ..+.|..|+.++...+++..+...++. ++..+..|+..+.| ..++
T Consensus 140 LEep----~~~t~~Il~t~~~~kl~~~I~SRc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G-dlR~ 213 (504)
T PRK14963 140 LEEP----PEHVIFILATTEPEKMPPTILSRT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG-AMRD 213 (504)
T ss_pred HHhC----CCCEEEEEEcCChhhCChHHhcce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 5442 345677777888899999999998 578999999999999999998877654 33346777887776 5667
Q ss_pred HHHHHHHHH
Q 001735 939 LKNLCIAAA 947 (1019)
Q Consensus 939 L~~L~~~Aa 947 (1019)
+.++++.+.
T Consensus 214 aln~Lekl~ 222 (504)
T PRK14963 214 AESLLERLL 222 (504)
T ss_pred HHHHHHHHH
Confidence 776666543
No 126
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=6.7e-12 Score=150.87 Aligned_cols=185 Identities=19% Similarity=0.256 Sum_probs=127.6
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 792 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~-------------- 792 (1019)
.+|+||+|++.+++.|..++.. + +.+..+||+||+|+|||++|+++|+.+.+.
T Consensus 13 ~sf~dIiGQe~v~~~L~~ai~~-----------~--ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC 79 (624)
T PRK14959 13 QTFAEVAGQETVKAILSRAAQE-----------N--RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQC 79 (624)
T ss_pred CCHHHhcCCHHHHHHHHHHHHc-----------C--CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHH
Confidence 5799999999999999998743 1 223679999999999999999999998652
Q ss_pred ----------EEEEeccccchhhhhhHHHHHHHHHHH-HHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhc
Q 001735 793 ----------FISITGSTLTSKWFGDAEKLTKALFSF-ASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWD 861 (1019)
Q Consensus 793 ----------fi~Is~seL~s~~~Ge~e~~I~~lF~~-Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ld 861 (1019)
++.++...-. ....... +...+.. .......||||||+|.|.. ...+.|+..++
T Consensus 80 ~~i~~g~hpDv~eId~a~~~--~Id~iR~-L~~~~~~~p~~g~~kVIIIDEad~Lt~------------~a~naLLk~LE 144 (624)
T PRK14959 80 RKVTQGMHVDVVEIDGASNR--GIDDAKR-LKEAIGYAPMEGRYKVFIIDEAHMLTR------------EAFNALLKTLE 144 (624)
T ss_pred HHHhcCCCCceEEEeccccc--CHHHHHH-HHHHHHhhhhcCCceEEEEEChHhCCH------------HHHHHHHHHhh
Confidence 4444432111 1112221 2222221 1223457999999999832 23466776665
Q ss_pred cccccCCCcEEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCC-CccCHHHHHHHhcCCCHHHHH
Q 001735 862 GLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLK 940 (1019)
Q Consensus 862 gl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeG~SgaDL~ 940 (1019)
.. ...+++|++|+.+..+.+.+++|+ ..+.|+.++.++...+|+..+....+. ++..+..|+..+.| +.+++.
T Consensus 145 EP----~~~~ifILaTt~~~kll~TI~SRc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~G-dlR~Al 218 (624)
T PRK14959 145 EP----PARVTFVLATTEPHKFPVTIVSRC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAG-SVRDSM 218 (624)
T ss_pred cc----CCCEEEEEecCChhhhhHHHHhhh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 42 246778888888888999999998 578899999999999999888776642 33446777877775 445555
Q ss_pred HHHHH
Q 001735 941 NLCIA 945 (1019)
Q Consensus 941 ~L~~~ 945 (1019)
+++..
T Consensus 219 ~lLeq 223 (624)
T PRK14959 219 SLLGQ 223 (624)
T ss_pred HHHHH
Confidence 55543
No 127
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=4.5e-12 Score=152.97 Aligned_cols=185 Identities=21% Similarity=0.232 Sum_probs=132.2
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 792 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~-------------- 792 (1019)
.+|++|+|++.+++.|..++.. .+.++.+||+||+|+|||++|+++|+.+++.
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~-------------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg 79 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQ-------------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCG 79 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCC
Confidence 5799999999999999998743 1234668999999999999999999998641
Q ss_pred ---------------EEEEeccccchhhhhhHHHHHHHHHHHHHhc----CCeEEEeccchhhhhccCCCchhHHHHHHH
Q 001735 793 ---------------FISITGSTLTSKWFGDAEKLTKALFSFASKL----APVIIFVDEVDSLLGARGGAFEHEATRRMR 853 (1019)
Q Consensus 793 ---------------fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark~----~PsIIfIDEID~L~~~r~~~~~~e~~~ril 853 (1019)
++.++...- ..-..++.+...+... ...|++|||+|.|... ..
T Consensus 80 ~C~~C~~i~~g~h~D~~eldaas~------~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~------------a~ 141 (618)
T PRK14951 80 VCQACRDIDSGRFVDYTELDAASN------RGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNT------------AF 141 (618)
T ss_pred ccHHHHHHHcCCCCceeecCcccc------cCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHH------------HH
Confidence 233332211 1122345555444322 2359999999998422 24
Q ss_pred HHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCC-CccCHHHHHHHhc
Q 001735 854 NEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATE 932 (1019)
Q Consensus 854 ~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~Te 932 (1019)
+.|+..++.. ...+.+|.+|+.+..+...+++|+ ..+.+..++.++...+++..+..+++. ++..+..|+..+.
T Consensus 142 NaLLKtLEEP----P~~~~fIL~Ttd~~kil~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~ 216 (618)
T PRK14951 142 NAMLKTLEEP----PEYLKFVLATTDPQKVPVTVLSRC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAAR 216 (618)
T ss_pred HHHHHhcccC----CCCeEEEEEECCchhhhHHHHHhc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 5666666542 345667777778888888999999 788999999999999999988877664 3334677888887
Q ss_pred CCCHHHHHHHHHHHHH
Q 001735 933 GYSGSDLKNLCIAAAY 948 (1019)
Q Consensus 933 G~SgaDL~~L~~~Aa~ 948 (1019)
| +.+++.+++..+..
T Consensus 217 G-slR~al~lLdq~ia 231 (618)
T PRK14951 217 G-SMRDALSLTDQAIA 231 (618)
T ss_pred C-CHHHHHHHHHHHHH
Confidence 7 77888888765543
No 128
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.41 E-value=6.9e-12 Score=150.90 Aligned_cols=184 Identities=21% Similarity=0.294 Sum_probs=133.2
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA--------------- 791 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~--------------- 791 (1019)
.+|++|+|++.+.+.|+..+.. .+.++.+||+||+|||||++|+.+|+.+.+
T Consensus 13 ~~f~~viGq~~v~~~L~~~i~~-------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C 79 (559)
T PRK05563 13 QTFEDVVGQEHITKTLKNAIKQ-------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEIC 79 (559)
T ss_pred CcHHhccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHH
Confidence 5799999999999999998743 123467999999999999999999998753
Q ss_pred ---------cEEEEeccccchhhhhhHHHHHHHHHHHHHh----cCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHh
Q 001735 792 ---------NFISITGSTLTSKWFGDAEKLTKALFSFASK----LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 858 (1019)
Q Consensus 792 ---------~fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark----~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~ 858 (1019)
.++.++++. ......++.+...+.. ....|++|||+|.|.. ...+.|+.
T Consensus 80 ~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~------------~a~naLLK 141 (559)
T PRK05563 80 KAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST------------GAFNALLK 141 (559)
T ss_pred HHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH------------HHHHHHHH
Confidence 344444432 1223445555555443 2346999999998832 23556776
Q ss_pred hhccccccCCCcEEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCC-CccCHHHHHHHhcCCCHH
Q 001735 859 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGS 937 (1019)
Q Consensus 859 ~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeG~Sga 937 (1019)
.++.. ...+++|.+|+.+..+.+.+++|+ ..+.|..|+.++...+++..+...++. ++..+..|+..+.| +.+
T Consensus 142 tLEep----p~~~ifIlatt~~~ki~~tI~SRc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~~R 215 (559)
T PRK05563 142 TLEEP----PAHVIFILATTEPHKIPATILSRC-QRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-GMR 215 (559)
T ss_pred HhcCC----CCCeEEEEEeCChhhCcHHHHhHh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 66543 335666667778899999999999 567899999999999999988877654 33346677887776 777
Q ss_pred HHHHHHHHHH
Q 001735 938 DLKNLCIAAA 947 (1019)
Q Consensus 938 DL~~L~~~Aa 947 (1019)
++.+++..+.
T Consensus 216 ~al~~Ldq~~ 225 (559)
T PRK05563 216 DALSILDQAI 225 (559)
T ss_pred HHHHHHHHHH
Confidence 7777776554
No 129
>PLN03025 replication factor C subunit; Provisional
Probab=99.41 E-value=7.7e-12 Score=140.66 Aligned_cols=183 Identities=19% Similarity=0.179 Sum_probs=122.1
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecccc
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAG-----ANFISITGSTL 801 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg-----~~fi~Is~seL 801 (1019)
.+|+|+.|.+++.+.|+.++.. + ...++||+||||||||++|.++|+++. ..++.++.++.
T Consensus 10 ~~l~~~~g~~~~~~~L~~~~~~-----------~---~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~ 75 (319)
T PLN03025 10 TKLDDIVGNEDAVSRLQVIARD-----------G---NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDD 75 (319)
T ss_pred CCHHHhcCcHHHHHHHHHHHhc-----------C---CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccccc
Confidence 5799999999999999887632 1 123699999999999999999999972 24666666543
Q ss_pred chhhhhhHHHHHHHHHHHHH----hcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEec
Q 001735 802 TSKWFGDAEKLTKALFSFAS----KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGAT 877 (1019)
Q Consensus 802 ~s~~~Ge~e~~I~~lF~~Ar----k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTT 877 (1019)
.+. ......+. .|.... .....||+|||+|.+.... .+.|+..++.. .....+|.+|
T Consensus 76 ~~~--~~vr~~i~-~~~~~~~~~~~~~~kviiiDE~d~lt~~a------------q~aL~~~lE~~----~~~t~~il~~ 136 (319)
T PLN03025 76 RGI--DVVRNKIK-MFAQKKVTLPPGRHKIVILDEADSMTSGA------------QQALRRTMEIY----SNTTRFALAC 136 (319)
T ss_pred ccH--HHHHHHHH-HHHhccccCCCCCeEEEEEechhhcCHHH------------HHHHHHHHhcc----cCCceEEEEe
Confidence 221 11111121 121111 1235799999999984321 23344444322 2234566788
Q ss_pred CCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCC-CccCHHHHHHHhcCCCHHHHHHHHH
Q 001735 878 NRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLKNLCI 944 (1019)
Q Consensus 878 N~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeG~SgaDL~~L~~ 944 (1019)
|.+..+.+++++|+ ..+.++.|+.++...+++..+..+++. ++..+..|+..+.| ..+.+.+.++
T Consensus 137 n~~~~i~~~L~SRc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g-DlR~aln~Lq 202 (319)
T PLN03025 137 NTSSKIIEPIQSRC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG-DMRQALNNLQ 202 (319)
T ss_pred CCccccchhHHHhh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 88888999999998 588999999999999999988876654 33446667766654 4445544444
No 130
>PRK06893 DNA replication initiation factor; Validated
Probab=99.40 E-value=4.3e-12 Score=136.44 Aligned_cols=180 Identities=16% Similarity=0.177 Sum_probs=112.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCC
Q 001735 766 KGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGG 842 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~ 842 (1019)
+.++||||||||||+|+.|+|+++ +....+++..... .....++... ....+|+||||+.+.+...
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~~--~~~dlLilDDi~~~~~~~~- 108 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ--------YFSPAVLENL--EQQDLVCLDDLQAVIGNEE- 108 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh--------hhhHHHHhhc--ccCCEEEEeChhhhcCChH-
Confidence 458999999999999999999986 4455555543211 1111222222 2458999999999854321
Q ss_pred CchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCc---HHHHhhCC--CCcccCCCCHHHHHHHHHHHHhccC
Q 001735 843 AFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLD---DAVIRRLP--RRIYVDLPDAENRMKILRIFLAHES 917 (1019)
Q Consensus 843 ~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~LD---~aLlrRFd--~~I~V~lPd~eeR~eILk~~L~~~~ 917 (1019)
.. ..|+..++.... .+..++|++++..|..++ +.+.+|+. ..+.++.|+.++|.+|++..+....
T Consensus 109 ------~~---~~l~~l~n~~~~-~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~ 178 (229)
T PRK06893 109 ------WE---LAIFDLFNRIKE-QGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRG 178 (229)
T ss_pred ------HH---HHHHHHHHHHHH-cCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcC
Confidence 11 123333333321 123455666666676654 78988764 5778999999999999998887555
Q ss_pred CC-CccCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHH
Q 001735 918 LE-SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQSKA 983 (1019)
Q Consensus 918 l~-~dvdl~~LA~~TeG~SgaDL~~L~~~Aa~~Airr~l~~~~~~~~~~~~~~~~pLT~eDF~~Al~ 983 (1019)
+. ++..+..|+....| +.+.+..++......++. ..++||++.+++++.
T Consensus 179 l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~~~----------------~~~~it~~~v~~~L~ 228 (229)
T PRK06893 179 IELSDEVANFLLKRLDR-DMHTLFDALDLLDKASLQ----------------AQRKLTIPFVKEILG 228 (229)
T ss_pred CCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHh----------------cCCCCCHHHHHHHhc
Confidence 43 33346777877775 566666665543211110 015689888887763
No 131
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.40 E-value=1.1e-11 Score=133.77 Aligned_cols=205 Identities=13% Similarity=0.088 Sum_probs=124.2
Q ss_pred Cccccccc--ChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 001735 726 GVRFDDIG--ALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGST 800 (1019)
Q Consensus 726 ~vtfdDIg--Gle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~se 800 (1019)
..+|++.. +...+...++.+... ....+++||||+|||||+|+.++++++ |..+.+++...
T Consensus 18 ~~~fd~f~~~~n~~a~~~l~~~~~~--------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 18 DETFASFYPGDNDSLLAALQNALRQ--------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred cCCccccccCccHHHHHHHHHHHhC--------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 45788754 345556666655422 112479999999999999999999876 34455555543
Q ss_pred cchhhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCc-EEEEEecCC
Q 001735 801 LTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQK-ILILGATNR 879 (1019)
Q Consensus 801 L~s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~-VLVIaTTN~ 879 (1019)
.... ...+..... ...+|+||||+.+.++.. ... .|...++... +..+ .+|+++++.
T Consensus 84 ~~~~--------~~~~~~~~~--~~dlliiDdi~~~~~~~~------~~~----~lf~l~n~~~--e~g~~~li~ts~~~ 141 (235)
T PRK08084 84 RAWF--------VPEVLEGME--QLSLVCIDNIECIAGDEL------WEM----AIFDLYNRIL--ESGRTRLLITGDRP 141 (235)
T ss_pred Hhhh--------hHHHHHHhh--hCCEEEEeChhhhcCCHH------HHH----HHHHHHHHHH--HcCCCeEEEeCCCC
Confidence 2211 111111111 136899999999854321 111 1222222221 1223 355555566
Q ss_pred CCC---CcHHHHhhCC--CCcccCCCCHHHHHHHHHHHHhccCCC-CccCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Q 001735 880 PFD---LDDAVIRRLP--RRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQE 953 (1019)
Q Consensus 880 p~~---LD~aLlrRFd--~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeG~SgaDL~~L~~~Aa~~Airr 953 (1019)
|.. +.+.+++|+. ..+.+..|+.+++.++++......++. ++.-+..|+....| +.+.+..++......++.+
T Consensus 142 p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~l~~ 220 (235)
T PRK08084 142 PRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQLDRASITA 220 (235)
T ss_pred hHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHhc
Confidence 655 5789999996 577788899999999999866655443 33346778888876 6777777766532121111
Q ss_pred HHHHHHhcCCCCCCCCccCCCHHHHHHHHH
Q 001735 954 LLEEERKRGKNDAAPVLRPLKLEDFIQSKA 983 (1019)
Q Consensus 954 ~l~~~~~~~~~~~~~~~~pLT~eDF~~Al~ 983 (1019)
.++||++.+++++.
T Consensus 221 ----------------~~~it~~~~k~~l~ 234 (235)
T PRK08084 221 ----------------QRKLTIPFVKEILK 234 (235)
T ss_pred ----------------CCCCCHHHHHHHHc
Confidence 15689888887763
No 132
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=7.3e-12 Score=149.43 Aligned_cols=184 Identities=20% Similarity=0.231 Sum_probs=129.4
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA--------------- 791 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~--------------- 791 (1019)
.+|++|+|++.+++.|...+.. -+.+..+||+||+|+|||++|+++|+.+.+
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~-------------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC 79 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALET-------------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENC 79 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 5799999999999999887743 123456899999999999999999998754
Q ss_pred ---------cEEEEeccccchhhhhhHHHHHHHHHHHHHh----cCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHh
Q 001735 792 ---------NFISITGSTLTSKWFGDAEKLTKALFSFASK----LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 858 (1019)
Q Consensus 792 ---------~fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark----~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~ 858 (1019)
.++.++...-. + ...++.+...+.. ....|+||||+|.+.. ...+.|+.
T Consensus 80 ~~i~~~~~~dlieidaas~~----g--vd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~------------~a~naLLK 141 (546)
T PRK14957 80 VAINNNSFIDLIEIDAASRT----G--VEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK------------QSFNALLK 141 (546)
T ss_pred HHHhcCCCCceEEeeccccc----C--HHHHHHHHHHHHhhhhcCCcEEEEEechhhccH------------HHHHHHHH
Confidence 23333332111 1 1223333333322 2356999999999832 23456777
Q ss_pred hhccccccCCCcEEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCC-CccCHHHHHHHhcCCCHH
Q 001735 859 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGS 937 (1019)
Q Consensus 859 ~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeG~Sga 937 (1019)
.|+.. ...+.+|++|+.+..+.+.+++|+ ..+.+..++.++...+++..+..+++. ++..+..|+..+.| +.+
T Consensus 142 ~LEep----p~~v~fIL~Ttd~~kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~G-dlR 215 (546)
T PRK14957 142 TLEEP----PEYVKFILATTDYHKIPVTILSRC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKG-SLR 215 (546)
T ss_pred HHhcC----CCCceEEEEECChhhhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 66543 245666666677888888899999 788999999999999999888876654 33346677777765 777
Q ss_pred HHHHHHHHHH
Q 001735 938 DLKNLCIAAA 947 (1019)
Q Consensus 938 DL~~L~~~Aa 947 (1019)
++.+++..++
T Consensus 216 ~alnlLek~i 225 (546)
T PRK14957 216 DALSLLDQAI 225 (546)
T ss_pred HHHHHHHHHH
Confidence 8888777655
No 133
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.40 E-value=6.4e-12 Score=140.82 Aligned_cols=183 Identities=19% Similarity=0.222 Sum_probs=118.2
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecccc
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAG-----ANFISITGSTL 801 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg-----~~fi~Is~seL 801 (1019)
.+|+++.|.+.+++.|..++.. + ...++||+||||||||++|+++++++. .+++.+++.++
T Consensus 12 ~~~~~~~g~~~~~~~L~~~~~~-----------~---~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~ 77 (337)
T PRK12402 12 ALLEDILGQDEVVERLSRAVDS-----------P---NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADF 77 (337)
T ss_pred CcHHHhcCCHHHHHHHHHHHhC-----------C---CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhh
Confidence 5699999999999999887632 1 113699999999999999999999883 35778887665
Q ss_pred chhh-------------hhh-------HHHHHHHHHHHHHh-----cCCeEEEeccchhhhhccCCCchhHHHHHHHHHH
Q 001735 802 TSKW-------------FGD-------AEKLTKALFSFASK-----LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEF 856 (1019)
Q Consensus 802 ~s~~-------------~Ge-------~e~~I~~lF~~Ark-----~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~L 856 (1019)
.... .+. ....++.+...... ..+.+|+|||+|.+... ..+.|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~------------~~~~L 145 (337)
T PRK12402 78 FDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRED------------AQQAL 145 (337)
T ss_pred hhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHH------------HHHHH
Confidence 3211 000 01222332222222 23469999999987321 12234
Q ss_pred HhhhccccccCCCcEEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCC-CccCHHHHHHHhcCCC
Q 001735 857 MSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYS 935 (1019)
Q Consensus 857 L~~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeG~S 935 (1019)
...++... ....+|.+++.+..+.+.+.+|+ ..+.+.+|+.++...+++..+...++. ++..+..|+..+.| +
T Consensus 146 ~~~le~~~----~~~~~Il~~~~~~~~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~g-d 219 (337)
T PRK12402 146 RRIMEQYS----RTCRFIIATRQPSKLIPPIRSRC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGG-D 219 (337)
T ss_pred HHHHHhcc----CCCeEEEEeCChhhCchhhcCCc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 44443321 12335556666667778888897 578889999999999999988876654 33446667766643 4
Q ss_pred HHHHHH
Q 001735 936 GSDLKN 941 (1019)
Q Consensus 936 gaDL~~ 941 (1019)
.+++.+
T Consensus 220 lr~l~~ 225 (337)
T PRK12402 220 LRKAIL 225 (337)
T ss_pred HHHHHH
Confidence 444433
No 134
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.39 E-value=1.2e-11 Score=131.91 Aligned_cols=199 Identities=19% Similarity=0.226 Sum_probs=125.9
Q ss_pred ccccccc--ChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 001735 727 VRFDDIG--ALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTL 801 (1019)
Q Consensus 727 vtfdDIg--Gle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL 801 (1019)
.+|+++. +.......++++... .....+++|+||+|||||+||+++++++ +.+++.+++..+
T Consensus 15 ~~~d~f~~~~~~~~~~~l~~~~~~-------------~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 15 PTFDNFVAGENAELVARLRELAAG-------------PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred hhhcccccCCcHHHHHHHHHHHhc-------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 6788854 445566666665421 1234679999999999999999999976 678888887665
Q ss_pred chhhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCc-EEEEEecCCC
Q 001735 802 TSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQK-ILILGATNRP 880 (1019)
Q Consensus 802 ~s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~-VLVIaTTN~p 880 (1019)
... +. ......+|+|||+|.+... . ...|+..++.... ... +++++++..+
T Consensus 82 ~~~------------~~--~~~~~~~liiDdi~~l~~~--------~----~~~L~~~~~~~~~--~~~~~vl~~~~~~~ 133 (227)
T PRK08903 82 LLA------------FD--FDPEAELYAVDDVERLDDA--------Q----QIALFNLFNRVRA--HGQGALLVAGPAAP 133 (227)
T ss_pred HHH------------Hh--hcccCCEEEEeChhhcCch--------H----HHHHHHHHHHHHH--cCCcEEEEeCCCCH
Confidence 321 11 1224679999999987321 1 1223333332221 223 3444444333
Q ss_pred C--CCcHHHHhhC--CCCcccCCCCHHHHHHHHHHHHhccCCC-CccCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Q 001735 881 F--DLDDAVIRRL--PRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELL 955 (1019)
Q Consensus 881 ~--~LD~aLlrRF--d~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeG~SgaDL~~L~~~Aa~~Airr~l 955 (1019)
. .+.+.+.+|| ...+.+++|+.+++..++..+.....+. ++..+..|+....| +.+++.++++.-...+...
T Consensus 134 ~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~l~~~~~~~-- 210 (227)
T PRK08903 134 LALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDALDRYSLEQ-- 210 (227)
T ss_pred HhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHh--
Confidence 2 3568888888 4688899999988999998877665543 33346667775554 7788887776532222111
Q ss_pred HHHHhcCCCCCCCCccCCCHHHHHHHHH
Q 001735 956 EEERKRGKNDAAPVLRPLKLEDFIQSKA 983 (1019)
Q Consensus 956 ~~~~~~~~~~~~~~~~pLT~eDF~~Al~ 983 (1019)
.++||+..+++++.
T Consensus 211 --------------~~~i~~~~~~~~l~ 224 (227)
T PRK08903 211 --------------KRPVTLPLLREMLA 224 (227)
T ss_pred --------------CCCCCHHHHHHHHh
Confidence 16799999988875
No 135
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.39 E-value=1.1e-11 Score=150.42 Aligned_cols=217 Identities=17% Similarity=0.208 Sum_probs=140.1
Q ss_pred ccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecc
Q 001735 730 DDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA----------GANFISITGS 799 (1019)
Q Consensus 730 dDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~el----------g~~fi~Is~s 799 (1019)
+.|.+.++.+++|..++.-.+.. ..+...++|+|+||||||++++.+..++ .+.+++|+|.
T Consensus 755 D~LPhREeEIeeLasfL~paIkg---------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm 825 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQ---------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM 825 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhc---------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC
Confidence 46889999999999888553321 1233346799999999999999998776 2667899996
Q ss_pred ccchhhh----------------h-hHHHHHHHHHHHHH--hcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhh
Q 001735 800 TLTSKWF----------------G-DAEKLTKALFSFAS--KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAW 860 (1019)
Q Consensus 800 eL~s~~~----------------G-e~e~~I~~lF~~Ar--k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~L 860 (1019)
.+...+. + .....+..+|.... .....||+|||||.|.... ..++-.|+..
T Consensus 826 ~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~---------QDVLYnLFR~- 895 (1164)
T PTZ00112 826 NVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT---------QKVLFTLFDW- 895 (1164)
T ss_pred ccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH---------HHHHHHHHHH-
Confidence 5432210 1 12345566676542 2335799999999996431 1223233332
Q ss_pred ccccccCCCcEEEEEecCC---CCCCcHHHHhhCCC-CcccCCCCHHHHHHHHHHHHhcc-CCCCccCHHHHHHHhcCCC
Q 001735 861 DGLRSKESQKILILGATNR---PFDLDDAVIRRLPR-RIYVDLPDAENRMKILRIFLAHE-SLESGFQFNELANATEGYS 935 (1019)
Q Consensus 861 dgl~~~~~~~VLVIaTTN~---p~~LD~aLlrRFd~-~I~V~lPd~eeR~eILk~~L~~~-~l~~dvdl~~LA~~TeG~S 935 (1019)
.. ....+++|||++|. +..|++.+.+||.. .+.|++++.+++.+||+..+... .+.++..+..+|+.....
T Consensus 896 --~~-~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~- 971 (1164)
T PTZ00112 896 --PT-KINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANV- 971 (1164)
T ss_pred --hh-ccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhc-
Confidence 11 23457999999986 45577888888864 48889999999999999988753 222333456666655432
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHHhhCC
Q 001735 936 GSDLKN---LCIAAAYRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQSKAKVGP 987 (1019)
Q Consensus 936 gaDL~~---L~~~Aa~~Airr~l~~~~~~~~~~~~~~~~pLT~eDF~~Al~kv~P 987 (1019)
.+|++. +|..|+.. +. ...|+.+|+.+|+.++..
T Consensus 972 SGDARKALDILRrAgEi---------ke---------gskVT~eHVrkAleeiE~ 1008 (1164)
T PTZ00112 972 SGDIRKALQICRKAFEN---------KR---------GQKIVPRDITEATNQLFD 1008 (1164)
T ss_pred CCHHHHHHHHHHHHHhh---------cC---------CCccCHHHHHHHHHHHHh
Confidence 245443 33333321 00 136889999999887743
No 136
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.39 E-value=1e-11 Score=140.52 Aligned_cols=185 Identities=20% Similarity=0.291 Sum_probs=129.2
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA--------------- 791 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~--------------- 791 (1019)
.+|++++|.+.+++.|.+.+.. + +.++.+||+||||+|||++|+++|+.+..
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~-----------~--~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c 77 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKN-----------G--RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESC 77 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHc-----------C--CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 5799999999999999987743 1 23467999999999999999999998743
Q ss_pred ---------cEEEEeccccchhhhhhHHHHHHHHHHHHHhc----CCeEEEeccchhhhhccCCCchhHHHHHHHHHHHh
Q 001735 792 ---------NFISITGSTLTSKWFGDAEKLTKALFSFASKL----APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 858 (1019)
Q Consensus 792 ---------~fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark~----~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~ 858 (1019)
.++.++... ......++.++..+... ...||+|||+|.+.. ...+.|+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~------------~~~~~Ll~ 139 (355)
T TIGR02397 78 KEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK------------SAFNALLK 139 (355)
T ss_pred HHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH------------HHHHHHHH
Confidence 233333321 11223455666655432 235999999998732 23456666
Q ss_pred hhccccccCCCcEEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCC-CccCHHHHHHHhcCCCHH
Q 001735 859 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGS 937 (1019)
Q Consensus 859 ~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeG~Sga 937 (1019)
.++.. ...+++|.+|+.+..+.+.+++|+ ..+.++.|+.++...++..++...++. ++..+..|+..+.| +.+
T Consensus 140 ~le~~----~~~~~lIl~~~~~~~l~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-~~~ 213 (355)
T TIGR02397 140 TLEEP----PEHVVFILATTEPHKIPATILSRC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG-SLR 213 (355)
T ss_pred HHhCC----ccceeEEEEeCCHHHHHHHHHhhe-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-ChH
Confidence 66542 235667777788888889999998 578899999999999999988876643 23345666777765 566
Q ss_pred HHHHHHHHHHH
Q 001735 938 DLKNLCIAAAY 948 (1019)
Q Consensus 938 DL~~L~~~Aa~ 948 (1019)
.+.+.+..++.
T Consensus 214 ~a~~~lekl~~ 224 (355)
T TIGR02397 214 DALSLLDQLIS 224 (355)
T ss_pred HHHHHHHHHHh
Confidence 66666655443
No 137
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.38 E-value=1.1e-11 Score=138.41 Aligned_cols=156 Identities=23% Similarity=0.284 Sum_probs=108.7
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhh
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWF 806 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s~~~ 806 (1019)
.+|+++.|.+++++.+..++.. + ..+..+||+||||+|||++|++++++.+.+++.+++.+ .. .
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~-----------~--~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~-~ 81 (316)
T PHA02544 18 STIDECILPAADKETFKSIVKK-----------G--RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR-I 81 (316)
T ss_pred CcHHHhcCcHHHHHHHHHHHhc-----------C--CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc-H
Confidence 5899999999999999988742 1 23355777999999999999999999999999998876 21 2
Q ss_pred hhHHHHHHHHHHHHH-hcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcH
Q 001735 807 GDAEKLTKALFSFAS-KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDD 885 (1019)
Q Consensus 807 Ge~e~~I~~lF~~Ar-k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~LD~ 885 (1019)
......+........ ...+.||+|||+|.+... . .. ..|...++.. ...+.+|.|||.+..+.+
T Consensus 82 ~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~-------~-~~---~~L~~~le~~----~~~~~~Ilt~n~~~~l~~ 146 (316)
T PHA02544 82 DFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA-------D-AQ---RHLRSFMEAY----SKNCSFIITANNKNGIIE 146 (316)
T ss_pred HHHHHHHHHHHHhhcccCCCeEEEEECcccccCH-------H-HH---HHHHHHHHhc----CCCceEEEEcCChhhchH
Confidence 222222222111111 124789999999987211 1 11 2222333332 235678889999999999
Q ss_pred HHHhhCCCCcccCCCCHHHHHHHHHHHHh
Q 001735 886 AVIRRLPRRIYVDLPDAENRMKILRIFLA 914 (1019)
Q Consensus 886 aLlrRFd~~I~V~lPd~eeR~eILk~~L~ 914 (1019)
++++|| ..+.++.|+.+++..+++.++.
T Consensus 147 ~l~sR~-~~i~~~~p~~~~~~~il~~~~~ 174 (316)
T PHA02544 147 PLRSRC-RVIDFGVPTKEEQIEMMKQMIV 174 (316)
T ss_pred HHHhhc-eEEEeCCCCHHHHHHHHHHHHH
Confidence 999999 5788999999999888765433
No 138
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.37 E-value=1.1e-11 Score=153.98 Aligned_cols=226 Identities=15% Similarity=0.228 Sum_probs=148.2
Q ss_pred cccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch-------
Q 001735 731 DIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS------- 803 (1019)
Q Consensus 731 DIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s------- 803 (1019)
+..|++++|+.+.+++....... ......++|+||||+|||++++.+|..++.+|+.+++.....
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~--------~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVN--------KIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH 394 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcc--------cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc
Confidence 48899999999998886432211 112346999999999999999999999999999988765421
Q ss_pred --hhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcccc-----------ccCCCc
Q 001735 804 --KWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR-----------SKESQK 870 (1019)
Q Consensus 804 --~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~-----------~~~~~~ 870 (1019)
.|.|.....+.+.+..+.... .||+|||||.+....++. ....|+..++.-. ..+-.+
T Consensus 395 ~~~~~g~~~G~~~~~l~~~~~~~-~villDEidk~~~~~~g~--------~~~aLlevld~~~~~~~~d~~~~~~~dls~ 465 (784)
T PRK10787 395 RRTYIGSMPGKLIQKMAKVGVKN-PLFLLDEIDKMSSDMRGD--------PASALLEVLDPEQNVAFSDHYLEVDYDLSD 465 (784)
T ss_pred hhccCCCCCcHHHHHHHhcCCCC-CEEEEEChhhcccccCCC--------HHHHHHHHhccccEEEEecccccccccCCc
Confidence 244444445555555554334 489999999987543221 1235555554210 012257
Q ss_pred EEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhc-----cCCC------CccCHHHHHHH-hcCCCHHH
Q 001735 871 ILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAH-----ESLE------SGFQFNELANA-TEGYSGSD 938 (1019)
Q Consensus 871 VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~-----~~l~------~dvdl~~LA~~-TeG~SgaD 938 (1019)
+++|+|+|.. .+++++++|| ..|.+..++.++..+|.+.++.. ..+. ++.-+..|+.. +..+-.+.
T Consensus 466 v~~i~TaN~~-~i~~aLl~R~-~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~ 543 (784)
T PRK10787 466 VMFVATSNSM-NIPAPLLDRM-EVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRS 543 (784)
T ss_pred eEEEEcCCCC-CCCHHHhcce-eeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcH
Confidence 8999999887 5999999999 57889999999999999988842 1111 11113444432 23344578
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHH
Q 001735 939 LKNLCIAAAYRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQSKA 983 (1019)
Q Consensus 939 L~~L~~~Aa~~Airr~l~~~~~~~~~~~~~~~~pLT~eDF~~Al~ 983 (1019)
|+.++...+..++.+.+.... .....|+.+++.+.+.
T Consensus 544 LeR~I~~i~r~~l~~~~~~~~--------~~~v~v~~~~~~~~lg 580 (784)
T PRK10787 544 LEREISKLCRKAVKQLLLDKS--------LKHIEINGDNLHDYLG 580 (784)
T ss_pred HHHHHHHHHHHHHHHHHhcCC--------CceeeecHHHHHHHhC
Confidence 888877766665555432111 1124578888877765
No 139
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=1.7e-11 Score=147.41 Aligned_cols=189 Identities=17% Similarity=0.179 Sum_probs=130.2
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 792 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~-------------- 792 (1019)
.+|+||+|++.+++.|+.++.. -+.++.+||+||+|||||++|+++|+.+++.
T Consensus 10 ~~f~eivGq~~i~~~L~~~i~~-------------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 76 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSSALDA-------------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESC 76 (584)
T ss_pred CcHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHH
Confidence 5799999999999999998743 1334568999999999999999999987531
Q ss_pred ------------EEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhh
Q 001735 793 ------------FISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAW 860 (1019)
Q Consensus 793 ------------fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~L 860 (1019)
++.++++... .+.+....+..+...-......|++|||+|.|.. ...+.|+..|
T Consensus 77 ~~i~~~~~~~~dvieidaas~~--gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~------------~A~NALLK~L 142 (584)
T PRK14952 77 VALAPNGPGSIDVVELDAASHG--GVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT------------AGFNALLKIV 142 (584)
T ss_pred HHhhcccCCCceEEEecccccc--CHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH------------HHHHHHHHHH
Confidence 3333332211 1122222222222111122346999999999842 2356777777
Q ss_pred ccccccCCCcEEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCC-CccCHHHHHHHhcCCCHHHH
Q 001735 861 DGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDL 939 (1019)
Q Consensus 861 dgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeG~SgaDL 939 (1019)
+.. ...+++|.+|+.+..+.+.+++|+ ..+.|..++.++..+++..++...++. ++..+..|+..+.| +.+++
T Consensus 143 EEp----p~~~~fIL~tte~~kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~G-dlR~a 216 (584)
T PRK14952 143 EEP----PEHLIFIFATTEPEKVLPTIRSRT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGG-SPRDT 216 (584)
T ss_pred hcC----CCCeEEEEEeCChHhhHHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 643 346777777888889999999997 678999999999999999988877653 23335556666654 77787
Q ss_pred HHHHHHHHH
Q 001735 940 KNLCIAAAY 948 (1019)
Q Consensus 940 ~~L~~~Aa~ 948 (1019)
.+++...+.
T Consensus 217 ln~Ldql~~ 225 (584)
T PRK14952 217 LSVLDQLLA 225 (584)
T ss_pred HHHHHHHHh
Confidence 777776543
No 140
>PRK08727 hypothetical protein; Validated
Probab=99.36 E-value=2.6e-11 Score=130.75 Aligned_cols=180 Identities=21% Similarity=0.185 Sum_probs=110.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCC
Q 001735 766 KGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGG 842 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~ 842 (1019)
..++|+||+|||||+|+.|+++++ +..+++++..++.. .+...+... ....+|+|||++.+.....
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~l--~~~dlLiIDDi~~l~~~~~- 110 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG--------RLRDALEAL--EGRSLVALDGLESIAGQRE- 110 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh--------hHHHHHHHH--hcCCEEEEeCcccccCChH-
Confidence 459999999999999999998775 66777776544322 222333322 2457999999998854321
Q ss_pred CchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCC---cHHHHhhC--CCCcccCCCCHHHHHHHHHHHHhccC
Q 001735 843 AFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDL---DDAVIRRL--PRRIYVDLPDAENRMKILRIFLAHES 917 (1019)
Q Consensus 843 ~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~L---D~aLlrRF--d~~I~V~lPd~eeR~eILk~~L~~~~ 917 (1019)
. . ..++..++... ....-+|+.+...|..+ .+.+++|| ...+.++.|+.+++.+|++.++....
T Consensus 111 -----~-~---~~lf~l~n~~~--~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~ 179 (233)
T PRK08727 111 -----D-E---VALFDFHNRAR--AAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRG 179 (233)
T ss_pred -----H-H---HHHHHHHHHHH--HcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcC
Confidence 1 1 12222222221 11222344444455554 68999997 45678899999999999998776544
Q ss_pred CC-CccCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHHh
Q 001735 918 LE-SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQSKAK 984 (1019)
Q Consensus 918 l~-~dvdl~~LA~~TeG~SgaDL~~L~~~Aa~~Airr~l~~~~~~~~~~~~~~~~pLT~eDF~~Al~k 984 (1019)
+. ++..+..|+..+.| +.+.+.++++.....+... .++||.+.+++.+..
T Consensus 180 l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~~~~~~~----------------~~~it~~~~~~~l~~ 230 (233)
T PRK08727 180 LALDEAAIDWLLTHGER-ELAGLVALLDRLDRESLAA----------------KRRVTVPFLRRVLEE 230 (233)
T ss_pred CCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHh----------------CCCCCHHHHHHHHhh
Confidence 43 33346677777664 3444444444332211111 146898888887754
No 141
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.36 E-value=1.5e-11 Score=152.98 Aligned_cols=186 Identities=20% Similarity=0.160 Sum_probs=128.5
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 792 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~-------------- 792 (1019)
.+|++|+|++.+++.|+..+.. .+.++.+||+||+|||||++|++||+.+.+.
T Consensus 12 ~~f~eiiGqe~v~~~L~~~i~~-------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC 78 (824)
T PRK07764 12 ATFAEVIGQEHVTEPLSTALDS-------------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSC 78 (824)
T ss_pred CCHHHhcCcHHHHHHHHHHHHh-------------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHH
Confidence 5799999999999999988743 1234569999999999999999999998641
Q ss_pred ------------EEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhh
Q 001735 793 ------------FISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAW 860 (1019)
Q Consensus 793 ------------fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~L 860 (1019)
|+.++..... .+.+....+..++.........|+||||+|.|.. ...|.|+..|
T Consensus 79 ~~~~~g~~~~~dv~eidaas~~--~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~------------~a~NaLLK~L 144 (824)
T PRK07764 79 VALAPGGPGSLDVTEIDAASHG--GVDDARELRERAFFAPAESRYKIFIIDEAHMVTP------------QGFNALLKIV 144 (824)
T ss_pred HHHHcCCCCCCcEEEecccccC--CHHHHHHHHHHHHhchhcCCceEEEEechhhcCH------------HHHHHHHHHH
Confidence 3333332211 1222222233333222334567999999999842 2356777777
Q ss_pred ccccccCCCcEEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCCC-ccCHHHHHHHhcCCCHHHH
Q 001735 861 DGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLES-GFQFNELANATEGYSGSDL 939 (1019)
Q Consensus 861 dgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~~-dvdl~~LA~~TeG~SgaDL 939 (1019)
+.. ...+++|++|+.++.|.+.|++|+ ..+.|..++.++..++|+.++..+++.- +..+..|+..+.| +.+++
T Consensus 145 EEp----P~~~~fIl~tt~~~kLl~TIrSRc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG-dlR~A 218 (824)
T PRK07764 145 EEP----PEHLKFIFATTEPDKVIGTIRSRT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG-SVRDS 218 (824)
T ss_pred hCC----CCCeEEEEEeCChhhhhHHHHhhe-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 653 346777777788888999999998 6888999999999999999888776542 2234556666655 55566
Q ss_pred HHHHHH
Q 001735 940 KNLCIA 945 (1019)
Q Consensus 940 ~~L~~~ 945 (1019)
.++++.
T Consensus 219 l~eLEK 224 (824)
T PRK07764 219 LSVLDQ 224 (824)
T ss_pred HHHHHH
Confidence 555544
No 142
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.35 E-value=1.6e-11 Score=151.05 Aligned_cols=180 Identities=23% Similarity=0.343 Sum_probs=120.9
Q ss_pred cccccccChHHHHH---HHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch
Q 001735 727 VRFDDIGALEDVKK---ALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS 803 (1019)
Q Consensus 727 vtfdDIgGle~vk~---~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s 803 (1019)
.+|+|++|++.+.. .|+.++.. ....++||+||||||||++|+++|+..+.+|+.+++....
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~--------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~- 89 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKA--------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAG- 89 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhc--------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhh-
Confidence 57899999998885 45555422 1224799999999999999999999999999888775321
Q ss_pred hhhhhHHHHHHHHHHHHH-----hcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEec-
Q 001735 804 KWFGDAEKLTKALFSFAS-----KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGAT- 877 (1019)
Q Consensus 804 ~~~Ge~e~~I~~lF~~Ar-----k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTT- 877 (1019)
. ..++..+..+. .....||||||||.+.... .+.|+..++ ...+++|++|
T Consensus 90 --i----~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~q------------QdaLL~~lE------~g~IiLI~aTT 145 (725)
T PRK13341 90 --V----KDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQ------------QDALLPWVE------NGTITLIGATT 145 (725)
T ss_pred --h----HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHH------------HHHHHHHhc------CceEEEEEecC
Confidence 1 11222222221 1245799999999984221 223443332 2356677655
Q ss_pred -CCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhc-------cCCC-CccCHHHHHHHhcCCCHHHHHHHHHHHH
Q 001735 878 -NRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAH-------ESLE-SGFQFNELANATEGYSGSDLKNLCIAAA 947 (1019)
Q Consensus 878 -N~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~-------~~l~-~dvdl~~LA~~TeG~SgaDL~~L~~~Aa 947 (1019)
|....+++++++|+ ..+.+++++.+++..+++.++.. ..+. ++..+..|+....| ..+.+.++++.|+
T Consensus 146 enp~~~l~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~a~ 222 (725)
T PRK13341 146 ENPYFEVNKALVSRS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALELAV 222 (725)
T ss_pred CChHhhhhhHhhccc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 33356899999997 57889999999999999998872 2221 23336667777654 5677777776655
No 143
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.35 E-value=1.5e-11 Score=142.39 Aligned_cols=228 Identities=23% Similarity=0.328 Sum_probs=143.0
Q ss_pred ccccc-ccChHHHHHHHHHHHHcccCCchhh-cc---CCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 001735 727 VRFDD-IGALEDVKKALNELVILPMRRPDLF-SR---GNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTL 801 (1019)
Q Consensus 727 vtfdD-IgGle~vk~~L~e~V~~pL~~pelf-~~---~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL 801 (1019)
..+++ |+|++++++.+...+.....+-... .. .+......+|||+||||||||++|+++|..++.+|..+++..+
T Consensus 73 ~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L 152 (413)
T TIGR00382 73 AHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTL 152 (413)
T ss_pred HHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhc
Confidence 34444 6899999999988775433321110 00 0111124689999999999999999999999999999998887
Q ss_pred ch-hhhhhH-HHHHHHHHHHH----HhcCCeEEEeccchhhhhccCCCc-hhHH-HHHHHHHHHhhhccccc--------
Q 001735 802 TS-KWFGDA-EKLTKALFSFA----SKLAPVIIFVDEVDSLLGARGGAF-EHEA-TRRMRNEFMSAWDGLRS-------- 865 (1019)
Q Consensus 802 ~s-~~~Ge~-e~~I~~lF~~A----rk~~PsIIfIDEID~L~~~r~~~~-~~e~-~~ril~~LL~~Ldgl~~-------- 865 (1019)
.. .|.|.. +..+..++..+ ....++||||||||.+...+.+.. ...+ ...+.+.||..|+|...
T Consensus 153 ~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr 232 (413)
T TIGR00382 153 TEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGR 232 (413)
T ss_pred cccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCc
Confidence 53 466653 44455544422 244678999999999976543221 1111 12466777777765431
Q ss_pred -cCCCcEEEEEecCCCC--------------------------------------------------CCcHHHHhhCCCC
Q 001735 866 -KESQKILILGATNRPF--------------------------------------------------DLDDAVIRRLPRR 894 (1019)
Q Consensus 866 -~~~~~VLVIaTTN~p~--------------------------------------------------~LD~aLlrRFd~~ 894 (1019)
.+..+.++|.|+|-.+ .+.|+++.|++.+
T Consensus 233 ~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~I 312 (413)
T TIGR00382 233 KHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVI 312 (413)
T ss_pred cccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeE
Confidence 1224567777776510 0336677788888
Q ss_pred cccCCCCHHHHHHHHHHH----Hhc-------cCCC---CccCHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHH
Q 001735 895 IYVDLPDAENRMKILRIF----LAH-------ESLE---SGFQFNELANA--TEGYSGSDLKNLCIAAAYRPVQEL 954 (1019)
Q Consensus 895 I~V~lPd~eeR~eILk~~----L~~-------~~l~---~dvdl~~LA~~--TeG~SgaDL~~L~~~Aa~~Airr~ 954 (1019)
+.+.+.+.++..+|+... +++ .++. ++..+..||+. ...+-.+-|+.+++.....++-++
T Consensus 313 v~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e~ 388 (413)
T TIGR00382 313 ATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFDL 388 (413)
T ss_pred eecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhhC
Confidence 888888999998888752 221 1111 22225556664 234556777777777666555543
No 144
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.34 E-value=3.2e-11 Score=147.02 Aligned_cols=190 Identities=18% Similarity=0.244 Sum_probs=131.8
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE---ec-----
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISI---TG----- 798 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~I---s~----- 798 (1019)
.+|++|+|++.+++.|+..+.. -+.++.+||+||+|+|||++|+++|+.+.+.-... .|
T Consensus 15 ~~f~dIiGQe~~v~~L~~aI~~-------------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~ 81 (725)
T PRK07133 15 KTFDDIVGQDHIVQTLKNIIKS-------------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIE 81 (725)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHH
Confidence 5799999999999999998743 12346789999999999999999999885521100 00
Q ss_pred -----cccc-hhhhh-hHHHHHHHHHHHHHhc----CCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccC
Q 001735 799 -----STLT-SKWFG-DAEKLTKALFSFASKL----APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKE 867 (1019)
Q Consensus 799 -----seL~-s~~~G-e~e~~I~~lF~~Ark~----~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~ 867 (1019)
.++. ....+ .....++.+...+... ...|++|||+|.|.. ...+.|+..|+..
T Consensus 82 ~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~------------~A~NALLKtLEEP---- 145 (725)
T PRK07133 82 NVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK------------SAFNALLKTLEEP---- 145 (725)
T ss_pred hhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH------------HHHHHHHHHhhcC----
Confidence 0000 00000 1133456666555433 346999999999842 2356777777653
Q ss_pred CCcEEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCCC-ccCHHHHHHHhcCCCHHHHHHHHHHH
Q 001735 868 SQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLES-GFQFNELANATEGYSGSDLKNLCIAA 946 (1019)
Q Consensus 868 ~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~~-dvdl~~LA~~TeG~SgaDL~~L~~~A 946 (1019)
...+++|.+|+.++.|.+.+++|| ..+.|..|+.++...++...+...++.- +..+..+|..+.| +.+++..++..+
T Consensus 146 P~~tifILaTte~~KLl~TI~SRc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~AlslLekl 223 (725)
T PRK07133 146 PKHVIFILATTEVHKIPLTILSRV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRDALSIAEQV 223 (725)
T ss_pred CCceEEEEEcCChhhhhHHHHhhc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 345777777788899999999999 5889999999999999998887766542 2236677777776 667777776654
Q ss_pred H
Q 001735 947 A 947 (1019)
Q Consensus 947 a 947 (1019)
+
T Consensus 224 ~ 224 (725)
T PRK07133 224 S 224 (725)
T ss_pred H
Confidence 3
No 145
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=8.5e-12 Score=147.54 Aligned_cols=165 Identities=24% Similarity=0.337 Sum_probs=122.6
Q ss_pred cccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc--------
Q 001735 731 DIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT-------- 802 (1019)
Q Consensus 731 DIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~-------- 802 (1019)
|=-|++++|+.+.+++.-..-+ .....+-+.|+||||+|||++++.||..+|..|+.++..-+.
T Consensus 412 DHYgm~dVKeRILEfiAV~kLr--------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLR--------GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhc--------ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 4578999999999988542111 122345688999999999999999999999999999875442
Q ss_pred -hhhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhc------------cccccCCC
Q 001735 803 -SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWD------------GLRSKESQ 869 (1019)
Q Consensus 803 -s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ld------------gl~~~~~~ 869 (1019)
..|+|.+...+.+......-..| +++|||||.+...-++. +. ..||..|| .+. -+-.
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~qGD--Pa------sALLElLDPEQNanFlDHYLdVp-~DLS 553 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGHQGD--PA------SALLELLDPEQNANFLDHYLDVP-VDLS 553 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCCCCC--hH------HHHHHhcChhhccchhhhccccc-cchh
Confidence 23777777777777777665554 67799999997433322 11 23333333 111 1234
Q ss_pred cEEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHh
Q 001735 870 KILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLA 914 (1019)
Q Consensus 870 ~VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~ 914 (1019)
+|++|||.|..+.++++|++|+ ..|.++-...++..+|.+.|+-
T Consensus 554 kVLFicTAN~idtIP~pLlDRM-EvIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 554 KVLFICTANVIDTIPPPLLDRM-EVIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred heEEEEeccccccCChhhhhhh-heeeccCccHHHHHHHHHHhhh
Confidence 7999999999999999999999 6888988899999999998875
No 146
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.34 E-value=2.6e-11 Score=145.25 Aligned_cols=183 Identities=17% Similarity=0.236 Sum_probs=129.0
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA--------------- 791 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~--------------- 791 (1019)
.+|++++|++.+++.|...+.. -+.++++||+||+|+|||++|+++|+.+.+
T Consensus 13 ~~F~dIIGQe~iv~~L~~aI~~-------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sC 79 (605)
T PRK05896 13 HNFKQIIGQELIKKILVNAILN-------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVC 79 (605)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 5799999999999999887733 123467999999999999999999998743
Q ss_pred ---------cEEEEeccccchhhhhhHHHHHHHHHHHHHhc----CCeEEEeccchhhhhccCCCchhHHHHHHHHHHHh
Q 001735 792 ---------NFISITGSTLTSKWFGDAEKLTKALFSFASKL----APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 858 (1019)
Q Consensus 792 ---------~fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark~----~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~ 858 (1019)
.++.+++... ..-..++.+...+... ...|++|||+|.|.. ...+.|+.
T Consensus 80 r~i~~~~h~DiieIdaas~------igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~------------~A~NaLLK 141 (605)
T PRK05896 80 ESINTNQSVDIVELDAASN------NGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST------------SAWNALLK 141 (605)
T ss_pred HHHHcCCCCceEEeccccc------cCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH------------HHHHHHHH
Confidence 2333333221 1122345554444332 236999999999832 12456666
Q ss_pred hhccccccCCCcEEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCC-CccCHHHHHHHhcCCCHH
Q 001735 859 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGS 937 (1019)
Q Consensus 859 ~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeG~Sga 937 (1019)
.++.. ...+++|.+|+.+..+.+.+++|+ ..+.+..|+.++...+++..+...++. ++..+..++..+.| +.+
T Consensus 142 tLEEP----p~~tvfIL~Tt~~~KLl~TI~SRc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G-dlR 215 (605)
T PRK05896 142 TLEEP----PKHVVFIFATTEFQKIPLTIISRC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG-SLR 215 (605)
T ss_pred HHHhC----CCcEEEEEECCChHhhhHHHHhhh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHH
Confidence 66543 335677777788899999999999 578999999999999999888776542 33346677777776 666
Q ss_pred HHHHHHHHH
Q 001735 938 DLKNLCIAA 946 (1019)
Q Consensus 938 DL~~L~~~A 946 (1019)
++.+++..+
T Consensus 216 ~AlnlLekL 224 (605)
T PRK05896 216 DGLSILDQL 224 (605)
T ss_pred HHHHHHHHH
Confidence 666666653
No 147
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.33 E-value=3.6e-11 Score=144.60 Aligned_cols=184 Identities=18% Similarity=0.214 Sum_probs=130.2
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 792 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~-------------- 792 (1019)
.+|+||+|++.+++.|+..+.. + +.++.+|||||+|+|||++|+++|+.+.+.
T Consensus 13 ~~f~diiGqe~iv~~L~~~i~~-----------~--~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C 79 (563)
T PRK06647 13 RDFNSLEGQDFVVETLKHSIES-----------N--KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSC 79 (563)
T ss_pred CCHHHccCcHHHHHHHHHHHHc-----------C--CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHH
Confidence 5799999999999999998743 1 234679999999999999999999998542
Q ss_pred ----------EEEEeccccchhhhhhHHHHHHHHHHHHH----hcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHh
Q 001735 793 ----------FISITGSTLTSKWFGDAEKLTKALFSFAS----KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 858 (1019)
Q Consensus 793 ----------fi~Is~seL~s~~~Ge~e~~I~~lF~~Ar----k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~ 858 (1019)
++.+++.. ...-..++.+...+. .....|++|||+|.|. ....+.|+.
T Consensus 80 ~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls------------~~a~naLLK 141 (563)
T PRK06647 80 KSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS------------NSAFNALLK 141 (563)
T ss_pred HHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC------------HHHHHHHHH
Confidence 23332211 011223344433322 2345799999999883 123566777
Q ss_pred hhccccccCCCcEEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCC-CccCHHHHHHHhcCCCHH
Q 001735 859 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGS 937 (1019)
Q Consensus 859 ~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeG~Sga 937 (1019)
.++. +...+++|.+|+.+..+.+++++|+ ..+.+..++.++...+++..+...++. ++..+..||..+.| +.+
T Consensus 142 ~LEe----pp~~~vfI~~tte~~kL~~tI~SRc-~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dlR 215 (563)
T PRK06647 142 TIEE----PPPYIVFIFATTEVHKLPATIKSRC-QHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SVR 215 (563)
T ss_pred hhcc----CCCCEEEEEecCChHHhHHHHHHhc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 6654 2346777777777888999999999 468899999999999999888766654 33446677877776 677
Q ss_pred HHHHHHHHHH
Q 001735 938 DLKNLCIAAA 947 (1019)
Q Consensus 938 DL~~L~~~Aa 947 (1019)
++.+++..++
T Consensus 216 ~alslLdkli 225 (563)
T PRK06647 216 DAYTLFDQVV 225 (563)
T ss_pred HHHHHHHHHH
Confidence 7777776554
No 148
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.33 E-value=3e-11 Score=130.18 Aligned_cols=188 Identities=26% Similarity=0.372 Sum_probs=133.3
Q ss_pred CcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc
Q 001735 726 GVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLT 802 (1019)
Q Consensus 726 ~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~ 802 (1019)
.+.++++.|++..++.|.+.... |-.+ .|.+++||+|++|||||++++|+.++. |..+|.|.-.++.
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~-------Fl~G---~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~ 92 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQ-------FLQG---LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLG 92 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHH-------HHcC---CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhc
Confidence 47899999999999999887644 3333 367899999999999999999999987 7788888765543
Q ss_pred hhhhhhHHHHHHHHHHHHHh-cCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCC
Q 001735 803 SKWFGDAEKLTKALFSFASK-LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPF 881 (1019)
Q Consensus 803 s~~~Ge~e~~I~~lF~~Ark-~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~ 881 (1019)
.+..++...+. ...-|||+|++- + ... ..-...|...|+|-....+.+|+|.+|+|+.+
T Consensus 93 ---------~l~~l~~~l~~~~~kFIlf~DDLs-F-e~~---------d~~yk~LKs~LeGgle~~P~NvliyATSNRRH 152 (249)
T PF05673_consen 93 ---------DLPELLDLLRDRPYKFILFCDDLS-F-EEG---------DTEYKALKSVLEGGLEARPDNVLIYATSNRRH 152 (249)
T ss_pred ---------cHHHHHHHHhcCCCCEEEEecCCC-C-CCC---------cHHHHHHHHHhcCccccCCCcEEEEEecchhh
Confidence 23344444442 245799999863 1 111 11235677778876656678999999999654
Q ss_pred CCcH-----------------------HHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCCCc-cCHHH----HHHHhcC
Q 001735 882 DLDD-----------------------AVIRRLPRRIYVDLPDAENRMKILRIFLAHESLESG-FQFNE----LANATEG 933 (1019)
Q Consensus 882 ~LD~-----------------------aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~~d-vdl~~----LA~~TeG 933 (1019)
.+.+ +|..||...+.|..|+.++-.+|++.++...++.-+ .++.. .|..-.|
T Consensus 153 Lv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~ 232 (249)
T PF05673_consen 153 LVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGG 232 (249)
T ss_pred ccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCC
Confidence 3221 345599999999999999999999999987776533 12222 2344456
Q ss_pred CCHHHHHHHH
Q 001735 934 YSGSDLKNLC 943 (1019)
Q Consensus 934 ~SgaDL~~L~ 943 (1019)
.||+--.+.+
T Consensus 233 RSGRtA~QF~ 242 (249)
T PF05673_consen 233 RSGRTARQFI 242 (249)
T ss_pred CCHHHHHHHH
Confidence 7776554444
No 149
>PRK05642 DNA replication initiation factor; Validated
Probab=99.33 E-value=3.8e-11 Score=129.66 Aligned_cols=179 Identities=18% Similarity=0.218 Sum_probs=114.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCC
Q 001735 766 KGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGG 842 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~ 842 (1019)
.+++|+||+|+|||+|++|+++++ +..+++++..++.... ..+..... ...+|+|||++.+.++..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~--~~d~LiiDDi~~~~~~~~- 114 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLE--QYELVCLDDLDVIAGKAD- 114 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhh--hCCEEEEechhhhcCChH-
Confidence 569999999999999999999875 6778888887765421 11222222 236899999998754321
Q ss_pred CchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCC---CcHHHHhhCC--CCcccCCCCHHHHHHHHHHHHhccC
Q 001735 843 AFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFD---LDDAVIRRLP--RRIYVDLPDAENRMKILRIFLAHES 917 (1019)
Q Consensus 843 ~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~---LD~aLlrRFd--~~I~V~lPd~eeR~eILk~~L~~~~ 917 (1019)
...+|+..++.+. ..++.+||+++..|.. +.+.+++||. ..+.+..|+.++|.++++..+...+
T Consensus 115 ---------~~~~Lf~l~n~~~--~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~ 183 (234)
T PRK05642 115 ---------WEEALFHLFNRLR--DSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRG 183 (234)
T ss_pred ---------HHHHHHHHHHHHH--hcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC
Confidence 1123334443332 2345677777765543 4689999995 4556688999999999996665544
Q ss_pred CC-CccCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHH
Q 001735 918 LE-SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQSKA 983 (1019)
Q Consensus 918 l~-~dvdl~~LA~~TeG~SgaDL~~L~~~Aa~~Airr~l~~~~~~~~~~~~~~~~pLT~eDF~~Al~ 983 (1019)
+. ++..+..|+....+ +.+.+..++..-...++.. .++||+.-+++++.
T Consensus 184 ~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~l~~----------------~~~it~~~~~~~L~ 233 (234)
T PRK05642 184 LHLTDEVGHFILTRGTR-SMSALFDLLERLDQASLQA----------------QRKLTIPFLKETLG 233 (234)
T ss_pred CCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHc----------------CCcCCHHHHHHHhc
Confidence 32 33346667777765 6677776665433222111 15688887777663
No 150
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.33 E-value=4e-11 Score=142.06 Aligned_cols=184 Identities=23% Similarity=0.257 Sum_probs=126.0
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 792 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~-------------- 792 (1019)
.+|+++.|++.+...|+..+.. .+.++.+|||||+|+|||++|+++|..+++.
T Consensus 13 ~~f~diiGq~~i~~~L~~~i~~-------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc 79 (486)
T PRK14953 13 KFFKEVIGQEIVVRILKNAVKL-------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENC 79 (486)
T ss_pred CcHHHccChHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHH
Confidence 5799999999999999988743 1234568999999999999999999987531
Q ss_pred ----------EEEEeccccchhhhhhHHHHHHHHHHHHHh----cCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHh
Q 001735 793 ----------FISITGSTLTSKWFGDAEKLTKALFSFASK----LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 858 (1019)
Q Consensus 793 ----------fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark----~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~ 858 (1019)
++.++.+.- .....++.+...+.. ....|++|||+|.+.. ...+.|+.
T Consensus 80 ~~i~~g~~~d~~eidaas~------~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~------------~a~naLLk 141 (486)
T PRK14953 80 VEIDKGSFPDLIEIDAASN------RGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK------------EAFNALLK 141 (486)
T ss_pred HHHhcCCCCcEEEEeCccC------CCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH------------HHHHHHHH
Confidence 222222110 112233444444332 2346999999998732 22456666
Q ss_pred hhccccccCCCcEEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCC-CccCHHHHHHHhcCCCHH
Q 001735 859 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGS 937 (1019)
Q Consensus 859 ~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeG~Sga 937 (1019)
.++.. +. .+++|.+|+.++.+.+++.+|+ ..+.+..|+.++...++..++...++. ++..+..|+..+.| +.+
T Consensus 142 ~LEep---p~-~~v~Il~tt~~~kl~~tI~SRc-~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~lr 215 (486)
T PRK14953 142 TLEEP---PP-RTIFILCTTEYDKIPPTILSRC-QRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-GMR 215 (486)
T ss_pred HHhcC---CC-CeEEEEEECCHHHHHHHHHHhc-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 66543 22 3455555667788888999998 478899999999999999998877654 23346667777765 567
Q ss_pred HHHHHHHHHH
Q 001735 938 DLKNLCIAAA 947 (1019)
Q Consensus 938 DL~~L~~~Aa 947 (1019)
++.+++..++
T Consensus 216 ~al~~Ldkl~ 225 (486)
T PRK14953 216 DAASLLDQAS 225 (486)
T ss_pred HHHHHHHHHH
Confidence 7777776654
No 151
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.32 E-value=2.9e-11 Score=146.06 Aligned_cols=183 Identities=21% Similarity=0.236 Sum_probs=129.6
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 792 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~-------------- 792 (1019)
.+|+||+|++.+++.|...+.. -+.++.+|||||+|+|||++|+++|+.+.+.
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~-------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c 79 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDT-------------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPC 79 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHH
Confidence 5799999999999999998743 1334678999999999999999999998542
Q ss_pred ----------EEEEeccccchhhhhhHHHHHHHHHHHHHhc----CCeEEEeccchhhhhccCCCchhHHHHHHHHHHHh
Q 001735 793 ----------FISITGSTLTSKWFGDAEKLTKALFSFASKL----APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 858 (1019)
Q Consensus 793 ----------fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark~----~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~ 858 (1019)
++.+++... .....++.+...+... ...|++|||+|.|.. ...+.|+.
T Consensus 80 ~~i~~g~~~d~~eid~~s~------~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~------------~a~naLLk 141 (576)
T PRK14965 80 VEITEGRSVDVFEIDGASN------TGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST------------NAFNALLK 141 (576)
T ss_pred HHHhcCCCCCeeeeeccCc------cCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH------------HHHHHHHH
Confidence 344443221 1123345555444322 235999999998842 23467777
Q ss_pred hhccccccCCCcEEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCC-CccCHHHHHHHhcCCCHH
Q 001735 859 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGS 937 (1019)
Q Consensus 859 ~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeG~Sga 937 (1019)
.|+.. ...+++|.+|+.++.|.+.+++|+ ..+.|..++.++....+...+...++. ++..+..|+..+.| +.+
T Consensus 142 ~LEep----p~~~~fIl~t~~~~kl~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G-~lr 215 (576)
T PRK14965 142 TLEEP----PPHVKFIFATTEPHKVPITILSRC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG-SMR 215 (576)
T ss_pred HHHcC----CCCeEEEEEeCChhhhhHHHHHhh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHH
Confidence 77643 346777778888899999999999 688899999999999998888877654 33446667777776 556
Q ss_pred HHHHHHHHH
Q 001735 938 DLKNLCIAA 946 (1019)
Q Consensus 938 DL~~L~~~A 946 (1019)
++.+++..+
T Consensus 216 ~al~~Ldql 224 (576)
T PRK14965 216 DSLSTLDQV 224 (576)
T ss_pred HHHHHHHHH
Confidence 655555443
No 152
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.31 E-value=2.8e-11 Score=132.49 Aligned_cols=173 Identities=20% Similarity=0.269 Sum_probs=119.6
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc------EEEEeccc
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN------FISITGST 800 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~------fi~Is~se 800 (1019)
.+|+++.|++.+.+.|...+.. +...++|||||||||||+.|+++|.++..+ +...+.++
T Consensus 33 kt~de~~gQe~vV~~L~~a~~~--------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSd 98 (346)
T KOG0989|consen 33 KTFDELAGQEHVVQVLKNALLR--------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASD 98 (346)
T ss_pred CcHHhhcchHHHHHHHHHHHhh--------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccc
Confidence 5899999999999999987732 122569999999999999999999998652 23334444
Q ss_pred cchhhhhhHHHHHHHHHHHHHh---------cCC-eEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCc
Q 001735 801 LTSKWFGDAEKLTKALFSFASK---------LAP-VIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQK 870 (1019)
Q Consensus 801 L~s~~~Ge~e~~I~~lF~~Ark---------~~P-sIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~ 870 (1019)
..+..+.. .. .+-|..... .+| -||+|||.|.|... ..++|...++. ....
T Consensus 99 erGisvvr--~K-ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsd------------aq~aLrr~mE~----~s~~ 159 (346)
T KOG0989|consen 99 ERGISVVR--EK-IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSD------------AQAALRRTMED----FSRT 159 (346)
T ss_pred cccccchh--hh-hcCHHHHhhccccccCCCCCcceEEEEechhhhhHH------------HHHHHHHHHhc----cccc
Confidence 33322111 11 112222211 122 69999999998533 22344444444 2456
Q ss_pred EEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCCCc-cCHHHHHHHhcC
Q 001735 871 ILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLESG-FQFNELANATEG 933 (1019)
Q Consensus 871 VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~~d-vdl~~LA~~TeG 933 (1019)
+.+|..||.++.|...+.+|+ ..+.|+....+.....|+.+..++++.-+ -.++.|+..++|
T Consensus 160 trFiLIcnylsrii~pi~SRC-~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G 222 (346)
T KOG0989|consen 160 TRFILICNYLSRIIRPLVSRC-QKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG 222 (346)
T ss_pred eEEEEEcCChhhCChHHHhhH-HHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 889999999999999999999 56788887888888888888888887533 336667776665
No 153
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.31 E-value=5.3e-11 Score=127.41 Aligned_cols=196 Identities=22% Similarity=0.301 Sum_probs=117.0
Q ss_pred CCccccccc-C--hHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEE
Q 001735 725 IGVRFDDIG-A--LEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA-----GANFISI 796 (1019)
Q Consensus 725 ~~vtfdDIg-G--le~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~el-----g~~fi~I 796 (1019)
++.||+..+ | ...+...++.+...+ + .....++||||+|+|||+|..|+++++ +..++++
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia~~~----------~--~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~ 70 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIAENP----------G--ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYL 70 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHHHST----------T--TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEE
T ss_pred CCCccccCCcCCcHHHHHHHHHHHHhcC----------C--CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceee
Confidence 346788863 3 334444454443321 1 122459999999999999999999875 6779999
Q ss_pred eccccchhhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEe
Q 001735 797 TGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGA 876 (1019)
Q Consensus 797 s~seL~s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaT 876 (1019)
++.++...+..........-|..... ...+|+||+++.+.++. ....+|+..++.+.. ..+.+||++
T Consensus 71 ~~~~f~~~~~~~~~~~~~~~~~~~~~-~~DlL~iDDi~~l~~~~----------~~q~~lf~l~n~~~~--~~k~li~ts 137 (219)
T PF00308_consen 71 SAEEFIREFADALRDGEIEEFKDRLR-SADLLIIDDIQFLAGKQ----------RTQEELFHLFNRLIE--SGKQLILTS 137 (219)
T ss_dssp EHHHHHHHHHHHHHTTSHHHHHHHHC-TSSEEEEETGGGGTTHH----------HHHHHHHHHHHHHHH--TTSEEEEEE
T ss_pred cHHHHHHHHHHHHHcccchhhhhhhh-cCCEEEEecchhhcCch----------HHHHHHHHHHHHHHh--hCCeEEEEe
Confidence 98887665543332211122332222 56899999999985431 122344444443322 234556666
Q ss_pred cCCCCC---CcHHHHhhCCC--CcccCCCCHHHHHHHHHHHHhccCCCC-ccCHHHHHHHhcCCCHHHHHHHHHHH
Q 001735 877 TNRPFD---LDDAVIRRLPR--RIYVDLPDAENRMKILRIFLAHESLES-GFQFNELANATEGYSGSDLKNLCIAA 946 (1019)
Q Consensus 877 TN~p~~---LD~aLlrRFd~--~I~V~lPd~eeR~eILk~~L~~~~l~~-dvdl~~LA~~TeG~SgaDL~~L~~~A 946 (1019)
...|.. +++.+.+||.. .+.+..|+.+.|.+|++..+...++.- +.-+..|+....+ +.++|..++..-
T Consensus 138 ~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~l 212 (219)
T PF00308_consen 138 DRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRR-DVRELEGALNRL 212 (219)
T ss_dssp SS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTS-SHHHHHHHHHHH
T ss_pred CCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcC-CHHHHHHHHHHH
Confidence 556554 56889999865 566788999999999999988776652 2235556766653 777877776653
No 154
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.30 E-value=7.6e-11 Score=138.67 Aligned_cols=187 Identities=22% Similarity=0.288 Sum_probs=126.8
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA--------------- 791 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~--------------- 791 (1019)
.+|+||+|++.+++.|...+.. -+.++.+|||||+|+|||++|+++|+.+.+
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~-------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~ 80 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRF-------------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAS 80 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHH
Confidence 5899999999999999888743 123467999999999999999999998743
Q ss_pred ----------cEEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhc
Q 001735 792 ----------NFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWD 861 (1019)
Q Consensus 792 ----------~fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ld 861 (1019)
.++.+++....+ ..........+..........||+|||+|.+.. ...+.|+..++
T Consensus 81 C~~i~~~~~~d~~~i~g~~~~g--id~ir~i~~~l~~~~~~~~~kvvIIdead~lt~------------~~~n~LLk~lE 146 (451)
T PRK06305 81 CKEISSGTSLDVLEIDGASHRG--IEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK------------EAFNSLLKTLE 146 (451)
T ss_pred HHHHhcCCCCceEEeeccccCC--HHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH------------HHHHHHHHHhh
Confidence 233343322110 111111111111111234568999999999842 12456666665
Q ss_pred cccccCCCcEEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCC-CccCHHHHHHHhcCCCHHHHH
Q 001735 862 GLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLK 940 (1019)
Q Consensus 862 gl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeG~SgaDL~ 940 (1019)
.. ...+++|++|+.+..+.+.+++|+ ..+.+..++.++...++...+...++. ++..+..|+..+.| +.+++.
T Consensus 147 ep----~~~~~~Il~t~~~~kl~~tI~sRc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g-dlr~a~ 220 (451)
T PRK06305 147 EP----PQHVKFFLATTEIHKIPGTILSRC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG-SLRDAE 220 (451)
T ss_pred cC----CCCceEEEEeCChHhcchHHHHhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 42 235677777788889999999999 578999999999999999888766543 33346677777765 555555
Q ss_pred HHHHHH
Q 001735 941 NLCIAA 946 (1019)
Q Consensus 941 ~L~~~A 946 (1019)
+++...
T Consensus 221 ~~Lekl 226 (451)
T PRK06305 221 SLYDYV 226 (451)
T ss_pred HHHHHH
Confidence 555543
No 155
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.30 E-value=7.2e-11 Score=140.53 Aligned_cols=186 Identities=21% Similarity=0.225 Sum_probs=131.7
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA--------------- 791 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~--------------- 791 (1019)
.+|++|+|++.+++.|...+.. + +.++.+|||||+|+|||++|+++|+.+.+
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~-----------g--rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C 77 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDN-----------N--RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQC 77 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHc-----------C--CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 5799999999999999988743 1 23456899999999999999999998732
Q ss_pred ---------cEEEEeccccchhhhhhHHHHHHHHHHHHHhc----CCeEEEeccchhhhhccCCCchhHHHHHHHHHHHh
Q 001735 792 ---------NFISITGSTLTSKWFGDAEKLTKALFSFASKL----APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 858 (1019)
Q Consensus 792 ---------~fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark~----~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~ 858 (1019)
.++.++...-. .-..++.+...+... ...|++|||+|.+.. ...+.|+.
T Consensus 78 ~~~~~~~h~dv~eldaas~~------gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~------------~A~NALLK 139 (535)
T PRK08451 78 QSALENRHIDIIEMDAASNR------GIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK------------EAFNALLK 139 (535)
T ss_pred HHHhhcCCCeEEEecccccc------CHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH------------HHHHHHHH
Confidence 13333322110 123344444332211 235999999998832 23456666
Q ss_pred hhccccccCCCcEEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCC-CccCHHHHHHHhcCCCHH
Q 001735 859 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGS 937 (1019)
Q Consensus 859 ~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeG~Sga 937 (1019)
.++.. ...+.+|.+|+.+..+.+++++|+ ..+.|..++.++....++..+...++. ++..+..|+..+.| +.+
T Consensus 140 ~LEEp----p~~t~FIL~ttd~~kL~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-dlR 213 (535)
T PRK08451 140 TLEEP----PSYVKFILATTDPLKLPATILSRT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-SLR 213 (535)
T ss_pred HHhhc----CCceEEEEEECChhhCchHHHhhc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHH
Confidence 66553 234666667777899999999997 688999999999999999888877654 33456778887776 788
Q ss_pred HHHHHHHHHHHH
Q 001735 938 DLKNLCIAAAYR 949 (1019)
Q Consensus 938 DL~~L~~~Aa~~ 949 (1019)
++.+++..|...
T Consensus 214 ~alnlLdqai~~ 225 (535)
T PRK08451 214 DTLTLLDQAIIY 225 (535)
T ss_pred HHHHHHHHHHHh
Confidence 888888776654
No 156
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.30 E-value=7.6e-11 Score=134.88 Aligned_cols=184 Identities=17% Similarity=0.233 Sum_probs=126.2
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------E--E
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN----------F--I 794 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~----------f--i 794 (1019)
.+|++++|.+.+++.+...+.. + +.++++|||||||+|||++|+++|+.+..+ + +
T Consensus 14 ~~~~~iig~~~~~~~l~~~i~~-----------~--~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~ 80 (367)
T PRK14970 14 QTFDDVVGQSHITNTLLNAIEN-----------N--HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIF 80 (367)
T ss_pred CcHHhcCCcHHHHHHHHHHHHc-----------C--CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceE
Confidence 5799999999999999888743 1 234679999999999999999999987542 1 2
Q ss_pred EEeccccchhhhhhHHHHHHHHHHHHHhc----CCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCc
Q 001735 795 SITGSTLTSKWFGDAEKLTKALFSFASKL----APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQK 870 (1019)
Q Consensus 795 ~Is~seL~s~~~Ge~e~~I~~lF~~Ark~----~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~ 870 (1019)
.++... ......++.++..+... ...||+|||+|.+.. ...+.|+..++.. ...
T Consensus 81 ~l~~~~------~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~------------~~~~~ll~~le~~----~~~ 138 (367)
T PRK14970 81 ELDAAS------NNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS------------AAFNAFLKTLEEP----PAH 138 (367)
T ss_pred Eecccc------CCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH------------HHHHHHHHHHhCC----CCc
Confidence 121111 11234556666655432 346999999998742 1245566555442 234
Q ss_pred EEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCC-CccCHHHHHHHhcCCCHHHHHHHHHHHH
Q 001735 871 ILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLKNLCIAAA 947 (1019)
Q Consensus 871 VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeG~SgaDL~~L~~~Aa 947 (1019)
.++|.+|+.+..+.+++.+|+ ..+.++.|+.++...++...+...++. ++..+..|+..+.| +.+.+.+.++...
T Consensus 139 ~~~Il~~~~~~kl~~~l~sr~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl~ 214 (367)
T PRK14970 139 AIFILATTEKHKIIPTILSRC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRVV 214 (367)
T ss_pred eEEEEEeCCcccCCHHHHhcc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 556666777788999999998 568899999999999999888876653 34456667776654 5565555555443
No 157
>PRK06620 hypothetical protein; Validated
Probab=99.29 E-value=8.8e-11 Score=125.35 Aligned_cols=164 Identities=16% Similarity=0.222 Sum_probs=105.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCch
Q 001735 766 KGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFE 845 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~ 845 (1019)
+.++||||||+|||+|++++++..+..++. .... ....+ ....+|+|||||.+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~-----------~~~~~-----~~~d~lliDdi~~~~-------- 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF-----------NEEIL-----EKYNAFIIEDIENWQ-------- 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-----------chhHH-----hcCCEEEEeccccch--------
Confidence 679999999999999999999988764433 1000 00111 134799999999651
Q ss_pred hHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCC--CcHHHHhhCCC--CcccCCCCHHHHHHHHHHHHhccCCC-C
Q 001735 846 HEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFD--LDDAVIRRLPR--RIYVDLPDAENRMKILRIFLAHESLE-S 920 (1019)
Q Consensus 846 ~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~--LD~aLlrRFd~--~I~V~lPd~eeR~eILk~~L~~~~l~-~ 920 (1019)
.. +|...++.+. +.++.+||+++..|.. + +++++|+.. .+.+..|+.+.+..+++..+...++. +
T Consensus 99 ~~-------~lf~l~N~~~--e~g~~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~ 168 (214)
T PRK06620 99 EP-------ALLHIFNIIN--EKQKYLLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTIS 168 (214)
T ss_pred HH-------HHHHHHHHHH--hcCCEEEEEcCCCccccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 11 2222222221 2345677777755554 6 889999854 57788899999999999888755443 3
Q ss_pred ccCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHH
Q 001735 921 GFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQSK 982 (1019)
Q Consensus 921 dvdl~~LA~~TeG~SgaDL~~L~~~Aa~~Airr~l~~~~~~~~~~~~~~~~pLT~eDF~~Al 982 (1019)
+..++.|+....+ +.+.+.+++......+.. ..++||++.+++++
T Consensus 169 ~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~~~----------------~~~~it~~~~~~~l 213 (214)
T PRK06620 169 RQIIDFLLVNLPR-EYSKIIEILENINYFALI----------------SKRKITISLVKEVL 213 (214)
T ss_pred HHHHHHHHHHccC-CHHHHHHHHHHHHHHHHH----------------cCCCCCHHHHHHHh
Confidence 3346777877765 667777766552211110 01568888888765
No 158
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.29 E-value=9.8e-11 Score=130.15 Aligned_cols=182 Identities=25% Similarity=0.284 Sum_probs=120.2
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecccc
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAG-----ANFISITGSTL 801 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg-----~~fi~Is~seL 801 (1019)
.+|+|+.|.+++++.|..++.. . ..+++||+||||||||++++++++++. .+++.+++++.
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~----------~----~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~ 79 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKE----------K----NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDE 79 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhC----------C----CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccc
Confidence 5799999999999999988732 1 113589999999999999999999872 34566654432
Q ss_pred chhhhhhHHHHHHH-HHHHHHh-----cCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEE
Q 001735 802 TSKWFGDAEKLTKA-LFSFASK-----LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILG 875 (1019)
Q Consensus 802 ~s~~~Ge~e~~I~~-lF~~Ark-----~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIa 875 (1019)
.+. ..+.. +...+.. ..+.+|+|||+|.+... ....|+..++... ....+|.
T Consensus 80 ~~~------~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~------------~~~~L~~~le~~~----~~~~lIl 137 (319)
T PRK00440 80 RGI------DVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSD------------AQQALRRTMEMYS----QNTRFIL 137 (319)
T ss_pred cch------HHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHH------------HHHHHHHHHhcCC----CCCeEEE
Confidence 210 11111 1122221 23569999999988321 1233444444321 2345666
Q ss_pred ecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCC-CccCHHHHHHHhcCCCHHHHHHHHHHH
Q 001735 876 ATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLKNLCIAA 946 (1019)
Q Consensus 876 TTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeG~SgaDL~~L~~~A 946 (1019)
++|.+..+.+++.+|+. .+.++.|+.++...+++.++...++. ++..+..++..+.| ..+.+.+.++.+
T Consensus 138 ~~~~~~~l~~~l~sr~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~~ 207 (319)
T PRK00440 138 SCNYSSKIIDPIQSRCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQAA 207 (319)
T ss_pred EeCCccccchhHHHHhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 77777888888999984 68999999999999999998876653 34457777777665 445544444443
No 159
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=3.6e-11 Score=143.18 Aligned_cols=165 Identities=21% Similarity=0.313 Sum_probs=125.0
Q ss_pred cccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc--------
Q 001735 731 DIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT-------- 802 (1019)
Q Consensus 731 DIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~-------- 802 (1019)
|=-|++++|+.+.+++.-...... ....-++|+||||+|||+|++.||+.+|..|+.++..-+.
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~--------~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKK--------LKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhcc--------CCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccc
Confidence 346899999999998865332221 1124588999999999999999999999999999876542
Q ss_pred -hhhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhc------------cccccCCC
Q 001735 803 -SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWD------------GLRSKESQ 869 (1019)
Q Consensus 803 -s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ld------------gl~~~~~~ 869 (1019)
..|+|.....+.+-...|....| +++|||||.+...-.+.. ...||..|| .+.. +=.
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGDP--------aSALLEVLDPEQN~~F~DhYLev~y-DLS 465 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGDP--------ASALLEVLDPEQNNTFSDHYLEVPY-DLS 465 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCCh--------HHHHHhhcCHhhcCchhhccccCcc-chh
Confidence 24788887788888888877665 667999999976543321 123333333 1111 224
Q ss_pred cEEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHh
Q 001735 870 KILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLA 914 (1019)
Q Consensus 870 ~VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~ 914 (1019)
.|++|+|+|..+.++.+|++|+ .+|.+.-.+.++..+|.+.|+-
T Consensus 466 ~VmFiaTANsl~tIP~PLlDRM-EiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 466 KVMFIATANSLDTIPAPLLDRM-EVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred heEEEeecCccccCChHHhcce-eeeeecCCChHHHHHHHHHhcc
Confidence 7999999999999999999999 6889999999999999998864
No 160
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.28 E-value=1.3e-10 Score=140.63 Aligned_cols=190 Identities=20% Similarity=0.135 Sum_probs=131.3
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe---------
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISIT--------- 797 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is--------- 797 (1019)
.+|+||+|++.+++.|...+.. -+.+..+||+||+|+|||++|+++|+.+.+.....+
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~-------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg 87 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFET-------------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCG 87 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCc
Confidence 5899999999999999987743 134578999999999999999999999865321111
Q ss_pred ----c--------cccchh--hhhhHHHHHHHHHHHHHhc----CCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhh
Q 001735 798 ----G--------STLTSK--WFGDAEKLTKALFSFASKL----APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSA 859 (1019)
Q Consensus 798 ----~--------seL~s~--~~Ge~e~~I~~lF~~Ark~----~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~ 859 (1019)
| .++... .....-..++.+...+... ...||||||+|.|.. ...+.|+..
T Consensus 88 ~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~------------~a~naLLKt 155 (598)
T PRK09111 88 VGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST------------AAFNALLKT 155 (598)
T ss_pred ccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH------------HHHHHHHHH
Confidence 0 001000 0001123455565555432 246999999999832 234666666
Q ss_pred hccccccCCCcEEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCC-CccCHHHHHHHhcCCCHHH
Q 001735 860 WDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSD 938 (1019)
Q Consensus 860 Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeG~SgaD 938 (1019)
|+.. ...+.+|.+|+.+..+.+.+++|+ ..+.|..|+.++...+++..+...++. ++..+..|+..+.| +.++
T Consensus 156 LEeP----p~~~~fIl~tte~~kll~tI~SRc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G-dlr~ 229 (598)
T PRK09111 156 LEEP----PPHVKFIFATTEIRKVPVTVLSRC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG-SVRD 229 (598)
T ss_pred HHhC----CCCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 6543 234666667777788888999999 578999999999999999988877654 22345667777766 6777
Q ss_pred HHHHHHHHH
Q 001735 939 LKNLCIAAA 947 (1019)
Q Consensus 939 L~~L~~~Aa 947 (1019)
+.+++..++
T Consensus 230 al~~Ldkli 238 (598)
T PRK09111 230 GLSLLDQAI 238 (598)
T ss_pred HHHHHHHHH
Confidence 777776654
No 161
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.26 E-value=6.1e-10 Score=135.66 Aligned_cols=224 Identities=19% Similarity=0.229 Sum_probs=133.0
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA----------GANFISI 796 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~el----------g~~fi~I 796 (1019)
.+|++++|.+.....+...+.. ..+.+++|+||||||||++|+++++.. +.+|+.+
T Consensus 151 ~~~~~iiGqs~~~~~l~~~ia~--------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i 216 (615)
T TIGR02903 151 RAFSEIVGQERAIKALLAKVAS--------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEV 216 (615)
T ss_pred CcHHhceeCcHHHHHHHHHHhc--------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEE
Confidence 5799999999998887665522 123469999999999999999998765 3578999
Q ss_pred eccccch-------hhhhhHHH----HHHHHHHH----------HHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHH
Q 001735 797 TGSTLTS-------KWFGDAEK----LTKALFSF----------ASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNE 855 (1019)
Q Consensus 797 s~seL~s-------~~~Ge~e~----~I~~lF~~----------Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~ 855 (1019)
++..+.. .+++.... .....+.. .......+|||||++.|-.. ....
T Consensus 217 ~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~--------~Q~~---- 284 (615)
T TIGR02903 217 DGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPL--------LQNK---- 284 (615)
T ss_pred echhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHH--------HHHH----
Confidence 9876521 11111100 00111110 01223579999999987322 2222
Q ss_pred HHhhhccc------------------------cccCCCcEEEEE-ecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHH
Q 001735 856 FMSAWDGL------------------------RSKESQKILILG-ATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILR 910 (1019)
Q Consensus 856 LL~~Ldgl------------------------~~~~~~~VLVIa-TTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk 910 (1019)
|+..++.- .......+++|+ ||+.+..+++++++||. .+.+++++.++...|++
T Consensus 285 Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~-~i~~~pls~edi~~Il~ 363 (615)
T TIGR02903 285 LLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCA-EVFFEPLTPEDIALIVL 363 (615)
T ss_pred HHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhcee-EEEeCCCCHHHHHHHHH
Confidence 22222110 000122355554 55678889999999995 66888899999999999
Q ss_pred HHHhccCCC-CccCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHHhhC
Q 001735 911 IFLAHESLE-SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQSKAKVG 986 (1019)
Q Consensus 911 ~~L~~~~l~-~dvdl~~LA~~TeG~SgaDL~~L~~~Aa~~Airr~l~~~~~~~~~~~~~~~~pLT~eDF~~Al~kv~ 986 (1019)
.++....+. ++..+..|+..+ +.++...+++..+.-.+..+.... . .......|+.+|+.+++..-+
T Consensus 364 ~~a~~~~v~ls~eal~~L~~ys--~~gRraln~L~~~~~~~~~~~~~~-~------~~~~~~~I~~edv~~~l~~~r 431 (615)
T TIGR02903 364 NAAEKINVHLAAGVEELIARYT--IEGRKAVNILADVYGYALYRAAEA-G------KENDKVTITQDDVYEVIQISR 431 (615)
T ss_pred HHHHHcCCCCCHHHHHHHHHCC--CcHHHHHHHHHHHHHHHHHHHHHh-c------cCCCCeeECHHHHHHHhCCCc
Confidence 998865432 222344455443 245555555555543333222100 0 011125799999999987543
No 162
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=1.2e-10 Score=134.94 Aligned_cols=184 Identities=17% Similarity=0.197 Sum_probs=123.7
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 792 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~-------------- 792 (1019)
.+|++|+|++.+++.|+..+.. -+.+..+||+||||+|||++|+++|+.+.+.
T Consensus 13 ~~~~eiiGq~~~~~~L~~~~~~-------------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~ 79 (397)
T PRK14955 13 KKFADITAQEHITRTIQNSLRM-------------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTE 79 (397)
T ss_pred CcHhhccChHHHHHHHHHHHHh-------------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCC
Confidence 5799999999999999887743 1344679999999999999999999998652
Q ss_pred ------------------EEEEeccccchhhhhhHHHHHHHHHHHHHh----cCCeEEEeccchhhhhccCCCchhHHHH
Q 001735 793 ------------------FISITGSTLTSKWFGDAEKLTKALFSFASK----LAPVIIFVDEVDSLLGARGGAFEHEATR 850 (1019)
Q Consensus 793 ------------------fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark----~~PsIIfIDEID~L~~~r~~~~~~e~~~ 850 (1019)
++.++.... .....++.+...+.. ....||||||+|.+...
T Consensus 80 ~c~~c~~c~~~~~~~~~n~~~~~~~~~------~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~----------- 142 (397)
T PRK14955 80 PCGECESCRDFDAGTSLNISEFDAASN------NSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIA----------- 142 (397)
T ss_pred CCCCCHHHHHHhcCCCCCeEeeccccc------CCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHH-----------
Confidence 222221110 112334444333321 12369999999998421
Q ss_pred HHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCC-CccCHHHHHH
Q 001735 851 RMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELAN 929 (1019)
Q Consensus 851 ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~ 929 (1019)
..+.|+..++.. ....++|.+|+.+..+.+.+.+|+ ..+.+..++.++...+++..+...++. ++..+..|+.
T Consensus 143 -~~~~LLk~LEep----~~~t~~Il~t~~~~kl~~tl~sR~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~ 216 (397)
T PRK14955 143 -AFNAFLKTLEEP----PPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGR 216 (397)
T ss_pred -HHHHHHHHHhcC----CCCeEEEEEeCChHHhHHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 234555555432 234555556666788888999988 478899999999998888888765542 3344677777
Q ss_pred HhcCCCHHHHHHHHHHHH
Q 001735 930 ATEGYSGSDLKNLCIAAA 947 (1019)
Q Consensus 930 ~TeG~SgaDL~~L~~~Aa 947 (1019)
.+.| +.+.+.+.+..+.
T Consensus 217 ~s~g-~lr~a~~~L~kl~ 233 (397)
T PRK14955 217 KAQG-SMRDAQSILDQVI 233 (397)
T ss_pred HcCC-CHHHHHHHHHHHH
Confidence 7765 5666666665543
No 163
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=2.6e-10 Score=138.18 Aligned_cols=184 Identities=17% Similarity=0.232 Sum_probs=125.3
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 792 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~-------------- 792 (1019)
.+|++|+|++.+++.|+..+.. + +-+..+||+||+|+|||++|+++|+.+.+.
T Consensus 13 ~~f~eivGQe~i~~~L~~~i~~-----------~--ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~ 79 (620)
T PRK14954 13 SKFADITAQEHITHTIQNSLRM-----------D--RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE 79 (620)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-----------C--CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC
Confidence 5799999999999999887733 1 334679999999999999999999998662
Q ss_pred ------------------EEEEeccccchhhhhhHHHHHHHHHHHHH----hcCCeEEEeccchhhhhccCCCchhHHHH
Q 001735 793 ------------------FISITGSTLTSKWFGDAEKLTKALFSFAS----KLAPVIIFVDEVDSLLGARGGAFEHEATR 850 (1019)
Q Consensus 793 ------------------fi~Is~seL~s~~~Ge~e~~I~~lF~~Ar----k~~PsIIfIDEID~L~~~r~~~~~~e~~~ 850 (1019)
|+.+++... .....++.+...+. .....|++|||+|.|..
T Consensus 80 ~Cg~C~sC~~~~~g~~~n~~~~d~~s~------~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~------------ 141 (620)
T PRK14954 80 PCGECESCRDFDAGTSLNISEFDAASN------NSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST------------ 141 (620)
T ss_pred CCccCHHHHHHhccCCCCeEEeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH------------
Confidence 111211110 01233444433332 12346999999999842
Q ss_pred HHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCC-CccCHHHHHH
Q 001735 851 RMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELAN 929 (1019)
Q Consensus 851 ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~ 929 (1019)
...+.|+..|+.. ...+++|.+|+.+..|.+.+.+|+ ..+.+..++.++...++...+...++. ++..+..|+.
T Consensus 142 ~a~naLLK~LEeP----p~~tv~IL~t~~~~kLl~TI~SRc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~ 216 (620)
T PRK14954 142 AAFNAFLKTLEEP----PPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIAR 216 (620)
T ss_pred HHHHHHHHHHhCC----CCCeEEEEEeCChhhhhHHHHhhc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 1245677666543 234555556667788889999998 688999999999998888888766542 3445677888
Q ss_pred HhcCCCHHHHHHHHHHHH
Q 001735 930 ATEGYSGSDLKNLCIAAA 947 (1019)
Q Consensus 930 ~TeG~SgaDL~~L~~~Aa 947 (1019)
.+.| +.+++.+.+...+
T Consensus 217 ~s~G-dlr~al~eLeKL~ 233 (620)
T PRK14954 217 KAQG-SMRDAQSILDQVI 233 (620)
T ss_pred HhCC-CHHHHHHHHHHHH
Confidence 8876 5566666655443
No 164
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.24 E-value=4.5e-11 Score=140.96 Aligned_cols=192 Identities=22% Similarity=0.236 Sum_probs=141.6
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE-------EEE-ec
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANF-------ISI-TG 798 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~f-------i~I-s~ 798 (1019)
.+|+|+.|++.+...|...+.. -+-.++.||.||.|||||++|+.+|+.+++.- ..+ .|
T Consensus 13 ~~F~evvGQe~v~~~L~nal~~-------------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C 79 (515)
T COG2812 13 KTFDDVVGQEHVVKTLSNALEN-------------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC 79 (515)
T ss_pred ccHHHhcccHHHHHHHHHHHHh-------------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh
Confidence 5799999999999999998855 13346799999999999999999999986531 110 11
Q ss_pred cccchh-h---------hhhHHHHHHHHHHHHH----hcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcccc
Q 001735 799 STLTSK-W---------FGDAEKLTKALFSFAS----KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR 864 (1019)
Q Consensus 799 seL~s~-~---------~Ge~e~~I~~lF~~Ar----k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~ 864 (1019)
-.+... + ....-..++.+-+.+. .....|++|||++.|. ....|.||..++.
T Consensus 80 k~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS------------~~afNALLKTLEE-- 145 (515)
T COG2812 80 KEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS------------KQAFNALLKTLEE-- 145 (515)
T ss_pred HhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh------------HHHHHHHhccccc--
Confidence 111111 0 0112334555555443 3335699999999873 4456777777754
Q ss_pred ccCCCcEEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCCCc-cCHHHHHHHhcCCCHHHHHHHH
Q 001735 865 SKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLESG-FQFNELANATEGYSGSDLKNLC 943 (1019)
Q Consensus 865 ~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~~d-vdl~~LA~~TeG~SgaDL~~L~ 943 (1019)
+...|.+|.+|..+..++..+++|+ ..+.+...+.++....|..++.++.+..+ ..+..||+..+| +.+|...++
T Consensus 146 --PP~hV~FIlATTe~~Kip~TIlSRc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDalslL 221 (515)
T COG2812 146 --PPSHVKFILATTEPQKIPNTILSRC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALSLL 221 (515)
T ss_pred --CccCeEEEEecCCcCcCchhhhhcc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHHHH
Confidence 3457999999999999999999999 67788888999999999999998888644 346778888887 778988888
Q ss_pred HHHHHH
Q 001735 944 IAAAYR 949 (1019)
Q Consensus 944 ~~Aa~~ 949 (1019)
..|...
T Consensus 222 Dq~i~~ 227 (515)
T COG2812 222 DQAIAF 227 (515)
T ss_pred HHHHHc
Confidence 877654
No 165
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.23 E-value=2e-10 Score=139.55 Aligned_cols=181 Identities=23% Similarity=0.251 Sum_probs=125.8
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 792 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~-------------- 792 (1019)
.+|+++.|.+.+++.|...+... +...++||+||+|+|||++|+++|+.+++.
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~-------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~ 79 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISN-------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCE 79 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcC-------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccH
Confidence 57999999999999999887541 123579999999999999999999998652
Q ss_pred ------------EEEEeccccchhhhhhHHHHHHHHHHHHHhc----CCeEEEeccchhhhhccCCCchhHHHHHHHHHH
Q 001735 793 ------------FISITGSTLTSKWFGDAEKLTKALFSFASKL----APVIIFVDEVDSLLGARGGAFEHEATRRMRNEF 856 (1019)
Q Consensus 793 ------------fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark~----~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~L 856 (1019)
++.++.. .......++.+...+... ...||||||+|.|.. ...+.|
T Consensus 80 ~C~~i~~g~h~D~~ei~~~------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~------------~a~naL 141 (620)
T PRK14948 80 LCRAIAAGNALDVIEIDAA------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST------------AAFNAL 141 (620)
T ss_pred HHHHHhcCCCccEEEEecc------ccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH------------HHHHHH
Confidence 2222221 112234566666555432 246999999999832 235677
Q ss_pred HhhhccccccCCCcEEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCC-CccCHHHHHHHhcCCC
Q 001735 857 MSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYS 935 (1019)
Q Consensus 857 L~~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeG~S 935 (1019)
+..++.. ...+++|++|+.+..+.+.+++|+ ..+.|..++.++....+..++...++. +...+..|+..+.| .
T Consensus 142 LK~LEeP----p~~tvfIL~t~~~~~llpTIrSRc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G-~ 215 (620)
T PRK14948 142 LKTLEEP----PPRVVFVLATTDPQRVLPTIISRC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQG-G 215 (620)
T ss_pred HHHHhcC----CcCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-C
Confidence 7777642 345677777778888999999998 677888888888888888777765543 22346677777776 3
Q ss_pred HHHHHHHHH
Q 001735 936 GSDLKNLCI 944 (1019)
Q Consensus 936 gaDL~~L~~ 944 (1019)
.+++.++++
T Consensus 216 lr~A~~lLe 224 (620)
T PRK14948 216 LRDAESLLD 224 (620)
T ss_pred HHHHHHHHH
Confidence 355555544
No 166
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.22 E-value=2.2e-10 Score=109.82 Aligned_cols=122 Identities=40% Similarity=0.643 Sum_probs=81.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhhHHHH---HHHHHHHHHhcCCeEEEeccchhhhh
Q 001735 765 CKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGDAEKL---TKALFSFASKLAPVIIFVDEVDSLLG 838 (1019)
Q Consensus 765 ~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~Ge~e~~---I~~lF~~Ark~~PsIIfIDEID~L~~ 838 (1019)
..+++|+||||+|||+++++++..+ +.+++.+++.............. ....+..+....+.+|+|||++.+..
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~ 98 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSR 98 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhH
Confidence 3579999999999999999999998 89999999887655433322111 12223344455789999999998721
Q ss_pred ccCCCchhHHHHHHHHHHHhhhccccc--cCCCcEEEEEecCCCC--CCcHHHHhhCCCCcccC
Q 001735 839 ARGGAFEHEATRRMRNEFMSAWDGLRS--KESQKILILGATNRPF--DLDDAVIRRLPRRIYVD 898 (1019)
Q Consensus 839 ~r~~~~~~e~~~ril~~LL~~Ldgl~~--~~~~~VLVIaTTN~p~--~LD~aLlrRFd~~I~V~ 898 (1019)
. . ...++..+..... .....+.+|++++... .+++.+.+||+..+.++
T Consensus 99 ~--------~----~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~~ 150 (151)
T cd00009 99 G--------A----QNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIP 150 (151)
T ss_pred H--------H----HHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHhhhccEeecC
Confidence 1 1 1222222222211 1134688888888777 78889999998666654
No 167
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.22 E-value=3.7e-10 Score=137.01 Aligned_cols=182 Identities=20% Similarity=0.252 Sum_probs=123.7
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 792 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~-------------- 792 (1019)
.+|++|+|++.+++.|+..+.. + +.++.+||+||+|+|||++|+++|+.+++.
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~-----------~--~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~ 79 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAE-----------G--RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEM 79 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHh-----------C--CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHH
Confidence 5799999999999999887743 1 233568999999999999999999987532
Q ss_pred -----------EEEEeccccchhhhhhHHHHHHHHHHHHHh----cCCeEEEeccchhhhhccCCCchhHHHHHHHHHHH
Q 001735 793 -----------FISITGSTLTSKWFGDAEKLTKALFSFASK----LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFM 857 (1019)
Q Consensus 793 -----------fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark----~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL 857 (1019)
++.++.... .....++.+...+.. ....||||||+|.|.. ...+.|+
T Consensus 80 c~~i~~~~~~d~~~i~~~~~------~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~------------~a~naLL 141 (585)
T PRK14950 80 CRAIAEGSAVDVIEMDAASH------TSVDDAREIIERVQFRPALARYKVYIIDEVHMLST------------AAFNALL 141 (585)
T ss_pred HHHHhcCCCCeEEEEecccc------CCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH------------HHHHHHH
Confidence 222222111 011223333332221 2346999999998832 2245666
Q ss_pred hhhccccccCCCcEEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCC-CccCHHHHHHHhcCCCH
Q 001735 858 SAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSG 936 (1019)
Q Consensus 858 ~~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeG~Sg 936 (1019)
..++.. ...+++|.+++..+.+.+.+++|+ ..+.|..++..+...++...+...++. ++..+..|+..+.| +.
T Consensus 142 k~LEep----p~~tv~Il~t~~~~kll~tI~SR~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-dl 215 (585)
T PRK14950 142 KTLEEP----PPHAIFILATTEVHKVPATILSRC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-SM 215 (585)
T ss_pred HHHhcC----CCCeEEEEEeCChhhhhHHHHhcc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 666543 234666666777778888999998 568899999999999999888776643 23346677777766 66
Q ss_pred HHHHHHHHH
Q 001735 937 SDLKNLCIA 945 (1019)
Q Consensus 937 aDL~~L~~~ 945 (1019)
+++.+.++.
T Consensus 216 r~al~~Lek 224 (585)
T PRK14950 216 RDAENLLQQ 224 (585)
T ss_pred HHHHHHHHH
Confidence 777666654
No 168
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.21 E-value=3.4e-10 Score=130.26 Aligned_cols=196 Identities=19% Similarity=0.291 Sum_probs=131.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhh
Q 001735 764 PCKGILLFGPPGTGKTLLAKALATEA-----GANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLG 838 (1019)
Q Consensus 764 p~~gVLL~GPpGTGKT~LArAIA~el-----g~~fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~ 838 (1019)
+.+.++||||.|.|||+|++|+++++ +..+++++...++..++......-..-|..-+ .-.+++||||+.+.+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~g 189 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAG 189 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcC
Confidence 34569999999999999999999987 34688888888777666555444455666665 568999999999976
Q ss_pred ccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCC---CcHHHHhhCCCC--cccCCCCHHHHHHHHHHHH
Q 001735 839 ARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFD---LDDAVIRRLPRR--IYVDLPDAENRMKILRIFL 913 (1019)
Q Consensus 839 ~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~---LD~aLlrRFd~~--I~V~lPd~eeR~eILk~~L 913 (1019)
+... ..+|...+..+.. ..+-+|+.+...|.. +.+.+++||... +.+.+|+.+.|..||+...
T Consensus 190 k~~~----------qeefFh~FN~l~~--~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka 257 (408)
T COG0593 190 KERT----------QEEFFHTFNALLE--NGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKA 257 (408)
T ss_pred ChhH----------HHHHHHHHHHHHh--cCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHH
Confidence 5321 2233333333322 233555555556655 558999999765 4567899999999999977
Q ss_pred hccCCC-CccCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHHhhCCCcc
Q 001735 914 AHESLE-SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQSKAKVGPSVA 990 (1019)
Q Consensus 914 ~~~~l~-~dvdl~~LA~~TeG~SgaDL~~L~~~Aa~~Airr~l~~~~~~~~~~~~~~~~pLT~eDF~~Al~kv~PS~s 990 (1019)
...++. ++.-+..+|..... +.++|..++......+... .++||.+-+.++++.+.....
T Consensus 258 ~~~~~~i~~ev~~~la~~~~~-nvReLegaL~~l~~~a~~~----------------~~~iTi~~v~e~L~~~~~~~~ 318 (408)
T COG0593 258 EDRGIEIPDEVLEFLAKRLDR-NVRELEGALNRLDAFALFT----------------KRAITIDLVKEILKDLLRAGE 318 (408)
T ss_pred HhcCCCCCHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHhc----------------CccCcHHHHHHHHHHhhcccc
Confidence 766654 33345667776653 6677776665544433211 135677777777766665544
No 169
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.21 E-value=3.1e-10 Score=124.54 Aligned_cols=134 Identities=25% Similarity=0.339 Sum_probs=89.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc------cchhhhhhHHHHH-HH-------------------HHHH
Q 001735 766 KGILLFGPPGTGKTLLAKALATEAGANFISITGST------LTSKWFGDAEKLT-KA-------------------LFSF 819 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~se------L~s~~~Ge~e~~I-~~-------------------lF~~ 819 (1019)
.+|||+||||||||++|+++|..+|.+++.+++.. +++.+.+.....+ .. .+..
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 56999999999999999999999999999998754 2333222111111 10 1112
Q ss_pred HHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcccc--c----------cCCCcEEEEEecCCCC-----C
Q 001735 820 ASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR--S----------KESQKILILGATNRPF-----D 882 (1019)
Q Consensus 820 Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~--~----------~~~~~VLVIaTTN~p~-----~ 882 (1019)
|.+ ...+|+||||+.+-+ .+.+.|+..++.-. . .....+.||+|+|... .
T Consensus 102 A~~-~g~~lllDEi~r~~~------------~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~ 168 (262)
T TIGR02640 102 AVR-EGFTLVYDEFTRSKP------------ETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHE 168 (262)
T ss_pred HHH-cCCEEEEcchhhCCH------------HHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceec
Confidence 222 357999999998632 12333444343210 0 0113567999999763 4
Q ss_pred CcHHHHhhCCCCcccCCCCHHHHHHHHHHHH
Q 001735 883 LDDAVIRRLPRRIYVDLPDAENRMKILRIFL 913 (1019)
Q Consensus 883 LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L 913 (1019)
+++++++|| ..+.++.|+.++-.+|++.+.
T Consensus 169 l~~aL~~R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 169 TQDALLDRL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred ccHHHHhhc-EEEECCCCCHHHHHHHHHHhh
Confidence 788999999 688999999999999998765
No 170
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=3.1e-09 Score=121.94 Aligned_cols=220 Identities=22% Similarity=0.259 Sum_probs=139.5
Q ss_pred ccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-----EEEEeccccchhh-
Q 001735 732 IGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-----FISITGSTLTSKW- 805 (1019)
Q Consensus 732 IgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~-----fi~Is~seL~s~~- 805 (1019)
+.+.++.+.++..++.-.+. + ..|.+++||||||||||.+++.++.++.-. +++|+|..+.+.+
T Consensus 19 l~~Re~ei~~l~~~l~~~~~-------~---~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~ 88 (366)
T COG1474 19 LPHREEEINQLASFLAPALR-------G---ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQ 88 (366)
T ss_pred ccccHHHHHHHHHHHHHHhc-------C---CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHH
Confidence 67788888888887644322 1 123469999999999999999999988433 8999997664332
Q ss_pred --------------hhh-HHHHHHHHHHHHHh-cCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCC
Q 001735 806 --------------FGD-AEKLTKALFSFASK-LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQ 869 (1019)
Q Consensus 806 --------------~Ge-~e~~I~~lF~~Ark-~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~ 869 (1019)
.|. .......+++.... ....||++||+|.|....+ .++-.|+..-. ....
T Consensus 89 i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~---------~~LY~L~r~~~----~~~~ 155 (366)
T COG1474 89 VLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG---------EVLYSLLRAPG----ENKV 155 (366)
T ss_pred HHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc---------hHHHHHHhhcc----ccce
Confidence 111 12223333333322 3567999999999976542 22333333222 2245
Q ss_pred cEEEEEecCCCC---CCcHHHHhhCC-CCcccCCCCHHHHHHHHHHHHhccCC---CCccCHHHHHHHhcCC--CHHHHH
Q 001735 870 KILILGATNRPF---DLDDAVIRRLP-RRIYVDLPDAENRMKILRIFLAHESL---ESGFQFNELANATEGY--SGSDLK 940 (1019)
Q Consensus 870 ~VLVIaTTN~p~---~LD~aLlrRFd-~~I~V~lPd~eeR~eILk~~L~~~~l---~~dvdl~~LA~~TeG~--SgaDL~ 940 (1019)
++.+|+.+|..+ .+++.+.++|. ..|.|++.+.+|...|+.......-. .++--+.-+|....-. ..+--.
T Consensus 156 ~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~ai 235 (366)
T COG1474 156 KVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAI 235 (366)
T ss_pred eEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHH
Confidence 789999998874 48889998764 45789999999999999988764211 1222234444333222 344455
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHHhhCCCc
Q 001735 941 NLCIAAAYRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQSKAKVGPSV 989 (1019)
Q Consensus 941 ~L~~~Aa~~Airr~l~~~~~~~~~~~~~~~~pLT~eDF~~Al~kv~PS~ 989 (1019)
.+|+.|+..|-++. ...++.+|..+|...+.+..
T Consensus 236 dilr~A~eiAe~~~---------------~~~v~~~~v~~a~~~~~~~~ 269 (366)
T COG1474 236 DILRRAGEIAEREG---------------SRKVSEDHVREAQEEIERDV 269 (366)
T ss_pred HHHHHHHHHHHhhC---------------CCCcCHHHHHHHHHHhhHHH
Confidence 66777776665431 24577777777766555443
No 171
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.10 E-value=2.2e-09 Score=130.56 Aligned_cols=183 Identities=16% Similarity=0.221 Sum_probs=128.6
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA--------------- 791 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~--------------- 791 (1019)
.+|++|+|++.+++.|...+.. -+.++.+|||||+|+|||++|+++|+.+.+
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~-------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~s 80 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIAT-------------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECES 80 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchH
Confidence 5799999999999999988743 123466999999999999999999998752
Q ss_pred ----------cEEEEeccccchhhhhhHHHHHHHHHHHHHhc----CCeEEEeccchhhhhccCCCchhHHHHHHHHHHH
Q 001735 792 ----------NFISITGSTLTSKWFGDAEKLTKALFSFASKL----APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFM 857 (1019)
Q Consensus 792 ----------~fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark~----~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL 857 (1019)
+++.+++... .....++.+...+... ...|++|||+|.|.. ...+.|+
T Consensus 81 C~~~~~~~~~n~~~ld~~~~------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~------------~a~naLL 142 (614)
T PRK14971 81 CVAFNEQRSYNIHELDAASN------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ------------AAFNAFL 142 (614)
T ss_pred HHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH------------HHHHHHH
Confidence 3344433211 1123455555444332 235999999999832 2345677
Q ss_pred hhhccccccCCCcEEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCCCc-cCHHHHHHHhcCCCH
Q 001735 858 SAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLESG-FQFNELANATEGYSG 936 (1019)
Q Consensus 858 ~~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~~d-vdl~~LA~~TeG~Sg 936 (1019)
..|+.. ....++|.+|+.+..+-+.+++|+ ..+.|..++.++...+++..+...++.-+ ..+..|+..+.| +.
T Consensus 143 K~LEep----p~~tifIL~tt~~~kIl~tI~SRc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g-dl 216 (614)
T PRK14971 143 KTLEEP----PSYAIFILATTEKHKILPTILSRC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG-GM 216 (614)
T ss_pred HHHhCC----CCCeEEEEEeCCchhchHHHHhhh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 766553 234566666667788999999999 67899999999999999988887776532 346777777765 66
Q ss_pred HHHHHHHHHH
Q 001735 937 SDLKNLCIAA 946 (1019)
Q Consensus 937 aDL~~L~~~A 946 (1019)
+++.+++...
T Consensus 217 r~al~~Lekl 226 (614)
T PRK14971 217 RDALSIFDQV 226 (614)
T ss_pred HHHHHHHHHH
Confidence 6666665553
No 172
>PRK09087 hypothetical protein; Validated
Probab=99.10 E-value=1.1e-09 Score=117.95 Aligned_cols=172 Identities=15% Similarity=0.133 Sum_probs=107.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCch
Q 001735 766 KGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFE 845 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~ 845 (1019)
+.++|+||+|+|||+|+++++...++.++.. ..+... ++.... ..+|+|||++.+.. .
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~--~~~~~~-----------~~~~~~---~~~l~iDDi~~~~~------~ 102 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHP--NEIGSD-----------AANAAA---EGPVLIEDIDAGGF------D 102 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecH--HHcchH-----------HHHhhh---cCeEEEECCCCCCC------C
Confidence 4599999999999999999999877664432 222111 111111 15899999997621 1
Q ss_pred hHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCC---CcHHHHhhCC--CCcccCCCCHHHHHHHHHHHHhccCCC-
Q 001735 846 HEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFD---LDDAVIRRLP--RRIYVDLPDAENRMKILRIFLAHESLE- 919 (1019)
Q Consensus 846 ~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~---LD~aLlrRFd--~~I~V~lPd~eeR~eILk~~L~~~~l~- 919 (1019)
.+ +|...++.+. +..+.+||+++..|.. ..+.+++||. ..+.+..|+.+.|.+|++..+....+.
T Consensus 103 ~~-------~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l 173 (226)
T PRK09087 103 ET-------GLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYV 173 (226)
T ss_pred HH-------HHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCC
Confidence 11 2333333222 2235666666655543 3678999985 567788999999999999999876553
Q ss_pred CccCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHHhh
Q 001735 920 SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQSKAKV 985 (1019)
Q Consensus 920 ~dvdl~~LA~~TeG~SgaDL~~L~~~Aa~~Airr~l~~~~~~~~~~~~~~~~pLT~eDF~~Al~kv 985 (1019)
++..+..|+....+ +.+.+..++......++. ..++||...++++++.+
T Consensus 174 ~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~----------------~~~~it~~~~~~~l~~~ 222 (226)
T PRK09087 174 DPHVVYYLVSRMER-SLFAAQTIVDRLDRLALE----------------RKSRITRALAAEVLNEM 222 (226)
T ss_pred CHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHH----------------hCCCCCHHHHHHHHHhh
Confidence 33346777777763 334444333222211111 11679999999998765
No 173
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.07 E-value=4.1e-10 Score=127.59 Aligned_cols=162 Identities=23% Similarity=0.354 Sum_probs=100.0
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------CCc--EEEEe
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA-------GAN--FISIT 797 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~el-------g~~--fi~Is 797 (1019)
..|++|.|+++++..|.-.... ....++||+|+||||||++|++++.-+ +.+ +..+.
T Consensus 5 ~~f~~i~Gq~~~~~~l~~~~~~--------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 5 FPFSAIVGQEEMKQAMVLTAID--------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCHHHhCCHHHHHHHHHHHHhc--------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 5699999999999988754321 112579999999999999999999988 332 11111
Q ss_pred cc---------ccchh---------------hhhhH--HHHH-H--HHHHH--HHhcCCeEEEeccchhhhhccCCCchh
Q 001735 798 GS---------TLTSK---------------WFGDA--EKLT-K--ALFSF--ASKLAPVIIFVDEVDSLLGARGGAFEH 846 (1019)
Q Consensus 798 ~s---------eL~s~---------------~~Ge~--e~~I-~--~lF~~--Ark~~PsIIfIDEID~L~~~r~~~~~~ 846 (1019)
+. .+... .+|.. +..+ . ..|.. .......+||||||+.+..
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~-------- 142 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLED-------- 142 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCH--------
Confidence 00 00000 11100 0000 0 00110 0011236999999999732
Q ss_pred HHHHHHHHHHHhhhc---------cccccCCCcEEEEEecCCCC-CCcHHHHhhCCCCcccCCCCH-HHHHHHHHHHHh
Q 001735 847 EATRRMRNEFMSAWD---------GLRSKESQKILILGATNRPF-DLDDAVIRRLPRRIYVDLPDA-ENRMKILRIFLA 914 (1019)
Q Consensus 847 e~~~ril~~LL~~Ld---------gl~~~~~~~VLVIaTTN~p~-~LD~aLlrRFd~~I~V~lPd~-eeR~eILk~~L~ 914 (1019)
.+...|+..|+ |.......++++|+|+|..+ .+.++++.||...+.++.|.. ++|.+|++....
T Consensus 143 ----~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~ 217 (334)
T PRK13407 143 ----HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDA 217 (334)
T ss_pred ----HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhc
Confidence 22334444442 22222345789999998755 589999999999999988866 899999987543
No 174
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.07 E-value=5e-09 Score=119.72 Aligned_cols=189 Identities=16% Similarity=0.113 Sum_probs=121.0
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-------cEEEE-e-
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA-------NFISI-T- 797 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~-------~fi~I-s- 797 (1019)
..|++|.|.+++++.|...+.. + +.+..+||+||+|+|||++|.++|+.+.+ +.... .
T Consensus 20 ~~~~~l~Gh~~a~~~L~~a~~~-----------g--rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~ 86 (351)
T PRK09112 20 SENTRLFGHEEAEAFLAQAYRE-----------G--KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD 86 (351)
T ss_pred CchhhccCcHHHHHHHHHHHHc-----------C--CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC
Confidence 4688999999999999988743 1 33467999999999999999999998854 11000 0
Q ss_pred --c-----------cccc--hhh--h--h-----hHHHHHHHHHHHH----HhcCCeEEEeccchhhhhccCCCchhHHH
Q 001735 798 --G-----------STLT--SKW--F--G-----DAEKLTKALFSFA----SKLAPVIIFVDEVDSLLGARGGAFEHEAT 849 (1019)
Q Consensus 798 --~-----------seL~--s~~--~--G-----e~e~~I~~lF~~A----rk~~PsIIfIDEID~L~~~r~~~~~~e~~ 849 (1019)
| +++. ... . + -....++.+-... ......||+|||+|.|..
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~----------- 155 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNR----------- 155 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCH-----------
Confidence 0 0110 000 0 0 0012233332222 223457999999999832
Q ss_pred HHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCCCccCHHHHHH
Q 001735 850 RRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELAN 929 (1019)
Q Consensus 850 ~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~ 929 (1019)
...+.|+..++.. ..+.++|..|+.+..+.+.+++|+ ..+.+++|+.++...++........ .++..+..++.
T Consensus 156 -~aanaLLk~LEEp----p~~~~fiLit~~~~~llptIrSRc-~~i~l~pl~~~~~~~~L~~~~~~~~-~~~~~~~~i~~ 228 (351)
T PRK09112 156 -NAANAILKTLEEP----PARALFILISHSSGRLLPTIRSRC-QPISLKPLDDDELKKALSHLGSSQG-SDGEITEALLQ 228 (351)
T ss_pred -HHHHHHHHHHhcC----CCCceEEEEECChhhccHHHHhhc-cEEEecCCCHHHHHHHHHHhhcccC-CCHHHHHHHHH
Confidence 2245677777653 234556666777888899999999 6999999999999999987433222 11223566777
Q ss_pred HhcCCCHHHHHHHHHHHH
Q 001735 930 ATEGYSGSDLKNLCIAAA 947 (1019)
Q Consensus 930 ~TeG~SgaDL~~L~~~Aa 947 (1019)
.+.| +++...+++....
T Consensus 229 ~s~G-~pr~Al~ll~~~~ 245 (351)
T PRK09112 229 RSKG-SVRKALLLLNYGG 245 (351)
T ss_pred HcCC-CHHHHHHHHhcCc
Confidence 7776 5555555554443
No 175
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.04 E-value=2.1e-09 Score=122.27 Aligned_cols=161 Identities=22% Similarity=0.279 Sum_probs=102.3
Q ss_pred CcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-------CcEEEEec
Q 001735 726 GVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAG-------ANFISITG 798 (1019)
Q Consensus 726 ~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg-------~~fi~Is~ 798 (1019)
...|++|+|++++|.+|...+..| ...+|||.||+|||||++|++++..+. .+|. ..+
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~p--------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p 77 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVIDP--------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHP 77 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccCC--------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCC
Confidence 356999999999999997765332 225799999999999999999987762 2332 000
Q ss_pred --cc-----cchh-------------------hhhhHHHH------HHHHHHHHH---------hcCCeEEEeccchhhh
Q 001735 799 --ST-----LTSK-------------------WFGDAEKL------TKALFSFAS---------KLAPVIIFVDEVDSLL 837 (1019)
Q Consensus 799 --se-----L~s~-------------------~~Ge~e~~------I~~lF~~Ar---------k~~PsIIfIDEID~L~ 837 (1019)
++ +.+. ..+.++.. +...|.... +....+||||||+.+.
T Consensus 78 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~ 157 (350)
T CHL00081 78 SDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD 157 (350)
T ss_pred CChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCC
Confidence 00 0000 00111111 111222111 1124799999999984
Q ss_pred hccCCCchhHHHHHHHHHHHhhhc---------cccccCCCcEEEEEecCCCC-CCcHHHHhhCCCCcccCCCC-HHHHH
Q 001735 838 GARGGAFEHEATRRMRNEFMSAWD---------GLRSKESQKILILGATNRPF-DLDDAVIRRLPRRIYVDLPD-AENRM 906 (1019)
Q Consensus 838 ~~r~~~~~~e~~~ril~~LL~~Ld---------gl~~~~~~~VLVIaTTN~p~-~LD~aLlrRFd~~I~V~lPd-~eeR~ 906 (1019)
+. . ...|+..++ |.......++++|+|.|..+ .+.++++.||...+.+..|+ .+.+.
T Consensus 158 ~~--------~----Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~ 225 (350)
T CHL00081 158 DH--------L----VDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRV 225 (350)
T ss_pred HH--------H----HHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHH
Confidence 32 2 223333332 22222345788999888765 59999999999999999987 69999
Q ss_pred HHHHHHH
Q 001735 907 KILRIFL 913 (1019)
Q Consensus 907 eILk~~L 913 (1019)
+|++...
T Consensus 226 ~il~~~~ 232 (350)
T CHL00081 226 KIVEQRT 232 (350)
T ss_pred HHHHhhh
Confidence 9998754
No 176
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.04 E-value=7.9e-09 Score=116.10 Aligned_cols=171 Identities=15% Similarity=0.201 Sum_probs=112.5
Q ss_pred ccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------cEEEEecc
Q 001735 728 RFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA--------NFISITGS 799 (1019)
Q Consensus 728 tfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~--------~fi~Is~s 799 (1019)
+|++|.|++.+++.|...+.. -+.++.+||+||+|+|||++|+++|+.+-+ .++.+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~-------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~ 68 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK-------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI 68 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc-------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc
Confidence 689999999999999887732 133467899999999999999999998732 22333221
Q ss_pred ccchhhhhhHHHHHHHHHHHHH----hcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEE
Q 001735 800 TLTSKWFGDAEKLTKALFSFAS----KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILG 875 (1019)
Q Consensus 800 eL~s~~~Ge~e~~I~~lF~~Ar----k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIa 875 (1019)
+ +... .-..++.+...+. .....|++||++|.+.. ...|.|+..++.. ...+++|.
T Consensus 69 ~--~~~i--~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~------------~a~naLLK~LEep----p~~t~~il 128 (313)
T PRK05564 69 N--KKSI--GVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTE------------QAQNAFLKTIEEP----PKGVFIIL 128 (313)
T ss_pred c--CCCC--CHHHHHHHHHHHhcCcccCCceEEEEechhhcCH------------HHHHHHHHHhcCC----CCCeEEEE
Confidence 0 1111 1122444444332 23346999999998831 2345677777642 23455555
Q ss_pred ecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCCCccCHHHHHHHhcCCC
Q 001735 876 ATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYS 935 (1019)
Q Consensus 876 TTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeG~S 935 (1019)
+|+.++.+.+.+++|+ ..+.++.|+.++...++...+. .+ +...+..++..+.|-.
T Consensus 129 ~~~~~~~ll~TI~SRc-~~~~~~~~~~~~~~~~l~~~~~--~~-~~~~~~~l~~~~~g~~ 184 (313)
T PRK05564 129 LCENLEQILDTIKSRC-QIYKLNRLSKEEIEKFISYKYN--DI-KEEEKKSAIAFSDGIP 184 (313)
T ss_pred EeCChHhCcHHHHhhc-eeeeCCCcCHHHHHHHHHHHhc--CC-CHHHHHHHHHHcCCCH
Confidence 6677889999999999 6889999999988887775543 11 2223555666666533
No 177
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=7.4e-10 Score=121.78 Aligned_cols=178 Identities=24% Similarity=0.359 Sum_probs=112.7
Q ss_pred CCceeecHHHHHHHHHHhhhhhhccCCCcccccccchhhhhhhhcccccCCCCCCccccc-ccChHHHHHHHHHHHHccc
Q 001735 672 GQRLHLPRESLEIAILRLKEQETASRKPTQNLKNLAKDEYESNFVSAVVPPGEIGVRFDD-IGALEDVKKALNELVILPM 750 (1019)
Q Consensus 672 ~~kv~V~~~df~~Al~~l~p~~~~~~~~~~~l~~~~~~e~e~~~~~~ii~~~e~~vtfdD-IgGle~vk~~L~e~V~~pL 750 (1019)
+..+.|+.+..+..-+.+........ ...-...+-.|.++...+|+ ++|++..|+.|.-.|....
T Consensus 16 gp~v~ICdeCielc~~ii~ee~~~~~--------------~~~~~~~lPtP~eik~~Ld~YVIGQe~AKKvLsVAVYNHY 81 (408)
T COG1219 16 GPGVYICDECIELCNDIIREELKEAL--------------DEKELSELPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHY 81 (408)
T ss_pred CCCceehHHHHHHHHHHHHHhhhhhc--------------cchhhccCCChHHHHHHhhhheecchhhhceeeeeehhHH
Confidence 44567888888887666654311110 00001112223344445555 6888888888876665543
Q ss_pred CCchhhcc-CCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch-hhhhhH-HHHHHHHHHHH----Hhc
Q 001735 751 RRPDLFSR-GNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS-KWFGDA-EKLTKALFSFA----SKL 823 (1019)
Q Consensus 751 ~~pelf~~-~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s-~~~Ge~-e~~I~~lF~~A----rk~ 823 (1019)
.+-..... ...--...+|||.||+|||||+||+.+|+.+++||-.-++..|.. .|+|+. |..+..+...| .+.
T Consensus 82 KRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rA 161 (408)
T COG1219 82 KRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERA 161 (408)
T ss_pred HHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHH
Confidence 33221111 111112356999999999999999999999999999999998865 578865 66666666554 334
Q ss_pred CCeEEEeccchhhhhccCCCc-hhHH-HHHHHHHHHhhhccc
Q 001735 824 APVIIFVDEVDSLLGARGGAF-EHEA-TRRMRNEFMSAWDGL 863 (1019)
Q Consensus 824 ~PsIIfIDEID~L~~~r~~~~-~~e~-~~ril~~LL~~Ldgl 863 (1019)
...||||||||.+..+..++. ...+ ..-+.+.||..+.|-
T Consensus 162 erGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 162 ERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred hCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 568999999999987654322 1221 235667788888763
No 178
>PHA02244 ATPase-like protein
Probab=99.02 E-value=2.9e-09 Score=121.11 Aligned_cols=124 Identities=20% Similarity=0.274 Sum_probs=78.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc----cchhhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccC
Q 001735 766 KGILLFGPPGTGKTLLAKALATEAGANFISITGST----LTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARG 841 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~se----L~s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~ 841 (1019)
.+|||+||||||||+||+++|..++.+|+.++... +.+ +...........|..|. ....+||||||+.+.+..
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G-~i~~~g~~~dgpLl~A~-~~GgvLiLDEId~a~p~v- 196 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKG-FIDANGKFHETPFYEAF-KKGGLFFIDEIDASIPEA- 196 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcc-cccccccccchHHHHHh-hcCCEEEEeCcCcCCHHH-
Confidence 46999999999999999999999999999987421 111 11111111112233333 246899999999863221
Q ss_pred CCchhHHHHHHHHHHH-----hhhccccccCCCcEEEEEecCCC-----------CCCcHHHHhhCCCCcccCCCCH
Q 001735 842 GAFEHEATRRMRNEFM-----SAWDGLRSKESQKILILGATNRP-----------FDLDDAVIRRLPRRIYVDLPDA 902 (1019)
Q Consensus 842 ~~~~~e~~~ril~~LL-----~~Ldgl~~~~~~~VLVIaTTN~p-----------~~LD~aLlrRFd~~I~V~lPd~ 902 (1019)
...++.++ ..+++.. ....++.+|+|+|.+ ..|++++++|| ..+.++.|+.
T Consensus 197 --------q~~L~~lLd~r~l~l~g~~i-~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRF-v~I~~dyp~~ 263 (383)
T PHA02244 197 --------LIIINSAIANKFFDFADERV-TAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRF-APIEFDYDEK 263 (383)
T ss_pred --------HHHHHHHhccCeEEecCcEE-ecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhc-EEeeCCCCcH
Confidence 11122222 1222221 123468899999974 45899999999 5788999883
No 179
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.02 E-value=1.5e-09 Score=121.97 Aligned_cols=140 Identities=15% Similarity=0.195 Sum_probs=95.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchh--hhhhHH----------HHHHHHHHHHHhcCCeEEEecc
Q 001735 765 CKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSK--WFGDAE----------KLTKALFSFASKLAPVIIFVDE 832 (1019)
Q Consensus 765 ~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s~--~~Ge~e----------~~I~~lF~~Ark~~PsIIfIDE 832 (1019)
.++|||.||||||||++|+++|..++.+++.+++...+.. ..|... ......+..|.+ .+.+|++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEech
Confidence 3579999999999999999999999999999988665433 333211 111223344433 468899999
Q ss_pred chhhhhccCCCchhHHHHHHHHHHHhh-----h-ccccc-cCCCcEEEEEecCCCC------------CCcHHHHhhCCC
Q 001735 833 VDSLLGARGGAFEHEATRRMRNEFMSA-----W-DGLRS-KESQKILILGATNRPF------------DLDDAVIRRLPR 893 (1019)
Q Consensus 833 ID~L~~~r~~~~~~e~~~ril~~LL~~-----L-dgl~~-~~~~~VLVIaTTN~p~------------~LD~aLlrRFd~ 893 (1019)
||..-+. ....++.+|.. + +.... .....+.||+|+|... .+++++++||..
T Consensus 143 in~a~p~---------~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i 213 (327)
T TIGR01650 143 YDAGRPD---------VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSI 213 (327)
T ss_pred hhccCHH---------HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheee
Confidence 9986322 11222333321 1 11011 1333688999999864 278999999977
Q ss_pred CcccCCCCHHHHHHHHHHHHh
Q 001735 894 RIYVDLPDAENRMKILRIFLA 914 (1019)
Q Consensus 894 ~I~V~lPd~eeR~eILk~~L~ 914 (1019)
.+.++.|+.++-.+|+.....
T Consensus 214 ~~~~~Yp~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 214 VTTLNYLEHDNEAAIVLAKAK 234 (327)
T ss_pred EeeCCCCCHHHHHHHHHhhcc
Confidence 788999999999999886543
No 180
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.01 E-value=2.7e-09 Score=127.15 Aligned_cols=168 Identities=23% Similarity=0.279 Sum_probs=112.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhhhhHHHHHHHHHHH----HHhcCCeEEEeccchhhhhcc
Q 001735 765 CKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSF----ASKLAPVIIFVDEVDSLLGAR 840 (1019)
Q Consensus 765 ~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s~~~Ge~e~~I~~lF~~----Ark~~PsIIfIDEID~L~~~r 840 (1019)
.+-+||+||||-|||+||+.||+++|+.++.|++++-.+.. .....|..+... -....|.+|+|||||--.
T Consensus 326 kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~~--~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~--- 400 (877)
T KOG1969|consen 326 KKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTAP--MVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP--- 400 (877)
T ss_pred cceEEeecCCCCChhHHHHHHHHhcCceEEEecccccccHH--HHHHHHHHHHhhccccccCCCcceEEEecccCCc---
Confidence 35589999999999999999999999999999998854321 111222221111 123579999999998521
Q ss_pred CCCchhHHHHHHHHHHHhhhc-------cccccC--------C--CcEEEEEecCCCCCCcHHHH--hhCCCCcccCCCC
Q 001735 841 GGAFEHEATRRMRNEFMSAWD-------GLRSKE--------S--QKILILGATNRPFDLDDAVI--RRLPRRIYVDLPD 901 (1019)
Q Consensus 841 ~~~~~~e~~~ril~~LL~~Ld-------gl~~~~--------~--~~VLVIaTTN~p~~LD~aLl--rRFd~~I~V~lPd 901 (1019)
+..+..++..+. |-.... . -.--|||.||.... |+|+ |-|...+.|..|.
T Consensus 401 ---------~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYa--PaLR~Lr~~A~ii~f~~p~ 469 (877)
T KOG1969|consen 401 ---------RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYA--PALRPLRPFAEIIAFVPPS 469 (877)
T ss_pred ---------HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccc--hhhhhcccceEEEEecCCC
Confidence 222333333332 111100 0 01237888887654 4554 4688899999999
Q ss_pred HHHHHHHHHHHHhccCCCCccCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 001735 902 AENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPV 951 (1019)
Q Consensus 902 ~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeG~SgaDL~~L~~~Aa~~Ai 951 (1019)
.....+-|+.++..+++. .|...|+..++ ++..||++.+++-.+.+.
T Consensus 470 ~s~Lv~RL~~IC~rE~mr--~d~~aL~~L~e-l~~~DIRsCINtLQfLa~ 516 (877)
T KOG1969|consen 470 QSRLVERLNEICHRENMR--ADSKALNALCE-LTQNDIRSCINTLQFLAS 516 (877)
T ss_pred hhHHHHHHHHHHhhhcCC--CCHHHHHHHHH-HhcchHHHHHHHHHHHHH
Confidence 999999999999888875 45666666666 566799988887666554
No 181
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.01 E-value=7e-09 Score=119.13 Aligned_cols=183 Identities=19% Similarity=0.150 Sum_probs=118.2
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 792 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~-------------- 792 (1019)
.++++|+|.+++++.|...+.. -+.+..+||+||+|+||+++|.++|+.+-+.
T Consensus 16 ~~~~~iiGq~~~~~~L~~~~~~-------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~ 82 (365)
T PRK07471 16 RETTALFGHAAAEAALLDAYRS-------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTS 82 (365)
T ss_pred CchhhccChHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccc
Confidence 4789999999999999988743 1345679999999999999999999987221
Q ss_pred --------------------EEEEecc--ccchhhhhh-HHHHHHHHHHHH----HhcCCeEEEeccchhhhhccCCCch
Q 001735 793 --------------------FISITGS--TLTSKWFGD-AEKLTKALFSFA----SKLAPVIIFVDEVDSLLGARGGAFE 845 (1019)
Q Consensus 793 --------------------fi~Is~s--eL~s~~~Ge-~e~~I~~lF~~A----rk~~PsIIfIDEID~L~~~r~~~~~ 845 (1019)
++.+... +-....... .-..++.+-..+ ....+.||+|||+|.+.
T Consensus 83 l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~-------- 154 (365)
T PRK07471 83 LAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN-------- 154 (365)
T ss_pred ccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC--------
Confidence 1111110 000000000 112344443333 23457899999999873
Q ss_pred hHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCCCccCHH
Q 001735 846 HEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFN 925 (1019)
Q Consensus 846 ~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~ 925 (1019)
....+.|+..++.. ....++|.+|+.++.+.+.+++|+ ..+.++.|+.++-.+++...... ..+..+.
T Consensus 155 ----~~aanaLLK~LEep----p~~~~~IL~t~~~~~llpti~SRc-~~i~l~~l~~~~i~~~L~~~~~~---~~~~~~~ 222 (365)
T PRK07471 155 ----ANAANALLKVLEEP----PARSLFLLVSHAPARLLPTIRSRC-RKLRLRPLAPEDVIDALAAAGPD---LPDDPRA 222 (365)
T ss_pred ----HHHHHHHHHHHhcC----CCCeEEEEEECCchhchHHhhccc-eEEECCCCCHHHHHHHHHHhccc---CCHHHHH
Confidence 23345677766543 235667778888888999999999 68899999999999888765321 1122234
Q ss_pred HHHHHhcCCCHHHHHHHH
Q 001735 926 ELANATEGYSGSDLKNLC 943 (1019)
Q Consensus 926 ~LA~~TeG~SgaDL~~L~ 943 (1019)
.++..+.| ++.....++
T Consensus 223 ~l~~~s~G-sp~~Al~ll 239 (365)
T PRK07471 223 ALAALAEG-SVGRALRLA 239 (365)
T ss_pred HHHHHcCC-CHHHHHHHh
Confidence 56777766 444444444
No 182
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.01 E-value=8.8e-09 Score=109.99 Aligned_cols=188 Identities=22% Similarity=0.339 Sum_probs=131.9
Q ss_pred CcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc
Q 001735 726 GVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLT 802 (1019)
Q Consensus 726 ~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~ 802 (1019)
.+.+.+|.|.+.+++.|.+.. +.|..+ .|.++|||+|..||||++|++|+.++. |..++.|+-.++.
T Consensus 56 ~i~L~~l~Gvd~qk~~L~~NT-------~~F~~G---~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~ 125 (287)
T COG2607 56 PIDLADLVGVDRQKEALVRNT-------EQFAEG---LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLA 125 (287)
T ss_pred CcCHHHHhCchHHHHHHHHHH-------HHHHcC---CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHh
Confidence 478999999999999997654 334443 366889999999999999999999887 5678888766654
Q ss_pred hhhhhhHHHHHHHHHHHHHhc-CCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCC
Q 001735 803 SKWFGDAEKLTKALFSFASKL-APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPF 881 (1019)
Q Consensus 803 s~~~Ge~e~~I~~lF~~Ark~-~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~ 881 (1019)
. +-.+++..+.. ..-|||+|++-- .. . ..-...|-..|+|-......+|+|.+|+|+.+
T Consensus 126 ~---------Lp~l~~~Lr~~~~kFIlFcDDLSF---e~-----g---d~~yK~LKs~LeG~ve~rP~NVl~YATSNRRH 185 (287)
T COG2607 126 T---------LPDLVELLRARPEKFILFCDDLSF---EE-----G---DDAYKALKSALEGGVEGRPANVLFYATSNRRH 185 (287)
T ss_pred h---------HHHHHHHHhcCCceEEEEecCCCC---CC-----C---chHHHHHHHHhcCCcccCCCeEEEEEecCCcc
Confidence 2 23344444333 347999999721 00 0 11234555667776556667999999999876
Q ss_pred CCcH----------------------HHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCCCc---cCHHH--HHHHhcCC
Q 001735 882 DLDD----------------------AVIRRLPRRIYVDLPDAENRMKILRIFLAHESLESG---FQFNE--LANATEGY 934 (1019)
Q Consensus 882 ~LD~----------------------aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~~d---vdl~~--LA~~TeG~ 934 (1019)
.|++ .+-.||...+.|.+++.++..+|+..+.++..+.-+ .+.+. .|..-.|-
T Consensus 186 Ll~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~R 265 (287)
T COG2607 186 LLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGGR 265 (287)
T ss_pred cccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 6552 233399999999999999999999999998887632 12222 24444567
Q ss_pred CHHHHHHHH
Q 001735 935 SGSDLKNLC 943 (1019)
Q Consensus 935 SgaDL~~L~ 943 (1019)
||+--.+.+
T Consensus 266 SGR~A~QF~ 274 (287)
T COG2607 266 SGRVAWQFI 274 (287)
T ss_pred ccHhHHHHH
Confidence 776444443
No 183
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.00 E-value=2.4e-09 Score=101.29 Aligned_cols=126 Identities=32% Similarity=0.377 Sum_probs=82.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc---EEEEeccccchhh--------------hhhHHHHHHHHHHHHHhcCCeEE
Q 001735 766 KGILLFGPPGTGKTLLAKALATEAGAN---FISITGSTLTSKW--------------FGDAEKLTKALFSFASKLAPVII 828 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~elg~~---fi~Is~seL~s~~--------------~Ge~e~~I~~lF~~Ark~~PsII 828 (1019)
..++|+||||||||++++++|..+... ++.+++....... ..........++..++...+.||
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 579999999999999999999999765 8888776543321 12345667788899988889999
Q ss_pred EeccchhhhhccCCCchhHHHHHHHHHH-HhhhccccccCCCcEEEEEecCC-CCCCcHHHHhhCCCCcccCCC
Q 001735 829 FVDEVDSLLGARGGAFEHEATRRMRNEF-MSAWDGLRSKESQKILILGATNR-PFDLDDAVIRRLPRRIYVDLP 900 (1019)
Q Consensus 829 fIDEID~L~~~r~~~~~~e~~~ril~~L-L~~Ldgl~~~~~~~VLVIaTTN~-p~~LD~aLlrRFd~~I~V~lP 900 (1019)
+|||++.+...... ....... ...... ........+|+++|. ....+..+..|++..+.+..+
T Consensus 83 iiDei~~~~~~~~~-------~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T smart00382 83 ILDEITSLLDAEQE-------ALLLLLEELRLLLL--LKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147 (148)
T ss_pred EEECCcccCCHHHH-------HHHHhhhhhHHHHH--HHhcCCCEEEEEeCCCccCchhhhhhccceEEEecCC
Confidence 99999998543211 0000000 000000 012345778888886 444555666688777766544
No 184
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=3.7e-09 Score=129.28 Aligned_cols=166 Identities=25% Similarity=0.373 Sum_probs=125.2
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA----------GANFISI 796 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~el----------g~~fi~I 796 (1019)
-.+|-++|.++.+..+.+.+.. +..++-+|.|+||+|||.++..+|... +..++.+
T Consensus 167 gklDPvIGRd~EI~r~iqIL~R--------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sL 232 (786)
T COG0542 167 GKLDPVIGRDEEIRRTIQILSR--------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSL 232 (786)
T ss_pred CCCCCCcChHHHHHHHHHHHhc--------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEe
Confidence 3566788999888887776532 122456889999999999999999886 4668888
Q ss_pred eccccch--hhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCch-hHHHHHHHHHHHhhhccccccCCCcEEE
Q 001735 797 TGSTLTS--KWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFE-HEATRRMRNEFMSAWDGLRSKESQKILI 873 (1019)
Q Consensus 797 s~seL~s--~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~-~e~~~ril~~LL~~Ldgl~~~~~~~VLV 873 (1019)
++..+.. +|.|+.|..++.+..+..+..+.|||||||+.+.+.....+. -.+.+ -|.-.| ....+-+
T Consensus 233 D~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaN----iLKPaL------ARGeL~~ 302 (786)
T COG0542 233 DLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAAN----LLKPAL------ARGELRC 302 (786)
T ss_pred cHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhh----hhHHHH------hcCCeEE
Confidence 8888854 688999999999999999999999999999999987544221 11222 221111 2345778
Q ss_pred EEecCC-----CCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccC
Q 001735 874 LGATNR-----PFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHES 917 (1019)
Q Consensus 874 IaTTN~-----p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~ 917 (1019)
||+|.. .-.-|+||-||| ..|.|..|+.++-..||+-+-..+.
T Consensus 303 IGATT~~EYRk~iEKD~AL~RRF-Q~V~V~EPs~e~ti~ILrGlk~~yE 350 (786)
T COG0542 303 IGATTLDEYRKYIEKDAALERRF-QKVLVDEPSVEDTIAILRGLKERYE 350 (786)
T ss_pred EEeccHHHHHHHhhhchHHHhcC-ceeeCCCCCHHHHHHHHHHHHHHHH
Confidence 888743 344788999999 6889999999999999997665443
No 185
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.97 E-value=1e-08 Score=106.58 Aligned_cols=143 Identities=18% Similarity=0.200 Sum_probs=94.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCc------------------------EEEEeccccchhhhhhHHHHHHHHHHH
Q 001735 764 PCKGILLFGPPGTGKTLLAKALATEAGAN------------------------FISITGSTLTSKWFGDAEKLTKALFSF 819 (1019)
Q Consensus 764 p~~gVLL~GPpGTGKT~LArAIA~elg~~------------------------fi~Is~seL~s~~~Ge~e~~I~~lF~~ 819 (1019)
.+..+||+||+|+|||++|+++++.+... +..+.... .. -....++.+...
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~~--~~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---QS--IKVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---Cc--CCHHHHHHHHHH
Confidence 44679999999999999999999987431 22222111 00 112344444444
Q ss_pred HHh----cCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHhhCCCCc
Q 001735 820 ASK----LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRI 895 (1019)
Q Consensus 820 Ark----~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I 895 (1019)
+.. ....||+|||+|.+... ..+.|+..++.. +...++|.+|+.+..+.+++++|+ ..+
T Consensus 88 ~~~~~~~~~~kviiide~~~l~~~------------~~~~Ll~~le~~----~~~~~~il~~~~~~~l~~~i~sr~-~~~ 150 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMNEA------------AANALLKTLEEP----PPNTLFILITPSPEKLLPTIRSRC-QVL 150 (188)
T ss_pred HccCcccCCeEEEEEechhhhCHH------------HHHHHHHHhcCC----CCCeEEEEEECChHhChHHHHhhc-EEe
Confidence 433 23579999999998422 245566666552 234566666777789999999999 588
Q ss_pred ccCCCCHHHHHHHHHHHHhccCCCCccCHHHHHHHhcC
Q 001735 896 YVDLPDAENRMKILRIFLAHESLESGFQFNELANATEG 933 (1019)
Q Consensus 896 ~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeG 933 (1019)
.+++|+.++..+++... ++. +..+..++..+.|
T Consensus 151 ~~~~~~~~~~~~~l~~~----gi~-~~~~~~i~~~~~g 183 (188)
T TIGR00678 151 PFPPLSEEALLQWLIRQ----GIS-EEAAELLLALAGG 183 (188)
T ss_pred eCCCCCHHHHHHHHHHc----CCC-HHHHHHHHHHcCC
Confidence 99999999998888765 232 2335556665554
No 186
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=1.1e-08 Score=113.28 Aligned_cols=178 Identities=26% Similarity=0.388 Sum_probs=120.2
Q ss_pred ccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch-hhhh---
Q 001735 732 IGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS-KWFG--- 807 (1019)
Q Consensus 732 IgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s-~~~G--- 807 (1019)
|+|+++.|..+.-.+....++..+-....---.|++||..||+|+|||-+|+.+|+-.++||+.+-+..+.. .|+|
T Consensus 17 IIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKfTEVGYVGrDV 96 (444)
T COG1220 17 IIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFTEVGYVGRDV 96 (444)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeeeeecccccccH
Confidence 789999999888777766555554433322335689999999999999999999999999998886543311 1111
Q ss_pred --------------------------------------------------------------------------------
Q 001735 808 -------------------------------------------------------------------------------- 807 (1019)
Q Consensus 808 -------------------------------------------------------------------------------- 807 (1019)
T Consensus 97 esivRDLve~av~lvke~~~~~vk~~ae~~aeeRild~Lvp~~~~~~g~~~~~~~~~~~r~~~rkkLr~GeLdd~eIeie 176 (444)
T COG1220 97 ESIIRDLVEIAVKLVREEKIEKVKDKAEELAEERILDALVPPAKNFWGQSENKQESSATREKFRKKLREGELDDKEIEIE 176 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcCcccccchHHHHHHHHHHHcCCCCccEEEEE
Confidence
Q ss_pred ------------------hHHHHHHHHHHHHHhc---------------------------------------CCeEEEe
Q 001735 808 ------------------DAEKLTKALFSFASKL---------------------------------------APVIIFV 830 (1019)
Q Consensus 808 ------------------e~e~~I~~lF~~Ark~---------------------------------------~PsIIfI 830 (1019)
+....+..+|..+... +..||||
T Consensus 177 v~~~~~~~~~i~~~pgme~~~~~l~~m~~~~~~~kkkkrk~~Vk~A~~~L~~eea~KLid~e~i~~eAi~~aE~~GIvFI 256 (444)
T COG1220 177 VADKGPPGFEIMGPPGMEEMTNNLQDMFGNLGGKKKKKRKLKVKEAKKLLIEEEADKLIDQEEIKQEAIDAAEQNGIVFI 256 (444)
T ss_pred EeccCCCccccCCCCcHHHHHHHHHHHHHHhcCCCcceeeeeHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcCeEEE
Confidence 0111122233221100 2369999
Q ss_pred ccchhhhhccCCCchhHHHH-HHHHHHHhhhcccc------ccCCCcEEEEEec----CCCCCCcHHHHhhCCCCcccCC
Q 001735 831 DEVDSLLGARGGAFEHEATR-RMRNEFMSAWDGLR------SKESQKILILGAT----NRPFDLDDAVIRRLPRRIYVDL 899 (1019)
Q Consensus 831 DEID~L~~~r~~~~~~e~~~-ril~~LL~~Ldgl~------~~~~~~VLVIaTT----N~p~~LD~aLlrRFd~~I~V~l 899 (1019)
||||.++.....+.. ..++ -+...||-.+.|-. +...+.+++||+. ..|.+|-|.|.-||+..+.+..
T Consensus 257 DEIDKIa~~~~~g~~-dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPIRVEL~~ 335 (444)
T COG1220 257 DEIDKIAKRGGSGGP-DVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPIRVELDA 335 (444)
T ss_pred ehhhHHHhcCCCCCC-CcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCceEEEccc
Confidence 999999876542221 2222 34445666665532 1244678999886 6899999999999999999999
Q ss_pred CCHHHHHHHHH
Q 001735 900 PDAENRMKILR 910 (1019)
Q Consensus 900 Pd~eeR~eILk 910 (1019)
.+.+.-..||.
T Consensus 336 Lt~~Df~rILt 346 (444)
T COG1220 336 LTKEDFERILT 346 (444)
T ss_pred CCHHHHHHHHc
Confidence 99888877764
No 187
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.95 E-value=2.5e-09 Score=102.88 Aligned_cols=81 Identities=9% Similarity=0.237 Sum_probs=62.6
Q ss_pred HHHHHHHHHhhcC-CeEEEEcCchhhhhcc--cCCccHHHHHHHHHHHHhcCCC---CEEEEecccCCCCCccccccccc
Q 001735 473 AMEALCEVLHSTQ-PLIVYFPDSSLWLSRA--VPRCNRKEFVRKVEEMFDQLSG---PVVLICGQNKNETGPKEKEKFTM 546 (1019)
Q Consensus 473 ~i~~L~e~~~~~~-p~Iiff~eid~~~~~~--~~~~~~~~~~s~~~~~l~~l~g---~v~vI~~~~~~d~~~~~~~~~~~ 546 (1019)
.+..+|+.++... |.||||||+|.++... ........+++.|...|+.... +++||
T Consensus 45 ~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI------------------ 106 (132)
T PF00004_consen 45 KIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVI------------------ 106 (132)
T ss_dssp HHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEE------------------
T ss_pred ccccccccccccccceeeeeccchhcccccccccccccccccceeeecccccccccccceeE------------------
Confidence 6677788888877 9999999999997654 2333445668888888888875 47776
Q ss_pred cccccccccCCCCchhhhhcccccCCCcchHHHH-hcccceEEEcC
Q 001735 547 ILPNFGRLAKLPLPLQRLTEGLKATKRSDDNEIY-NLFTNVLSIHP 591 (1019)
Q Consensus 547 ~~~~~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~-rrFe~~~eI~L 591 (1019)
++||+++.|+++|+ +||+..|+|+|
T Consensus 107 --------------------~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 107 --------------------ATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp --------------------EEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred --------------------EeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 55666677999999 89999999986
No 188
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.93 E-value=4.3e-08 Score=109.49 Aligned_cols=94 Identities=20% Similarity=0.129 Sum_probs=65.7
Q ss_pred CCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCC-CccCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 001735 879 RPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEE 957 (1019)
Q Consensus 879 ~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeG~SgaDL~~L~~~Aa~~Airr~l~~ 957 (1019)
.|+-++..+++|. ..|...+.+.++..+|++.....+.+. ++..++.|+....--|-+--.+|+.-|...|-++-
T Consensus 341 sPhGIP~DlLDRl-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg--- 416 (450)
T COG1224 341 SPHGIPLDLLDRL-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRG--- 416 (450)
T ss_pred CCCCCCHhhhhhe-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhC---
Confidence 4677999999998 677788889999999999988876654 33446667766655555555555555544443331
Q ss_pred HHhcCCCCCCCCccCCCHHHHHHHHHhhCCC
Q 001735 958 ERKRGKNDAAPVLRPLKLEDFIQSKAKVGPS 988 (1019)
Q Consensus 958 ~~~~~~~~~~~~~~pLT~eDF~~Al~kv~PS 988 (1019)
...+..+|+..|..-+...
T Consensus 417 ------------~~~V~~~dVe~a~~lF~D~ 435 (450)
T COG1224 417 ------------SKRVEVEDVERAKELFLDV 435 (450)
T ss_pred ------------CCeeehhHHHHHHHHHhhH
Confidence 1458889999998777543
No 189
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.93 E-value=2.5e-09 Score=105.31 Aligned_cols=112 Identities=28% Similarity=0.400 Sum_probs=69.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchh--hhhhHH------HHHHHHHHHHHhcCCeEEEeccchhhhh
Q 001735 767 GILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSK--WFGDAE------KLTKALFSFASKLAPVIIFVDEVDSLLG 838 (1019)
Q Consensus 767 gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s~--~~Ge~e------~~I~~lF~~Ark~~PsIIfIDEID~L~~ 838 (1019)
+|||+||||||||+||+.+|..++.+++.+.+...... ..|... ......+..+. ..+.|+|||||+..-
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~-~~~~il~lDEin~a~- 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM-RKGGILVLDEINRAP- 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH-HEEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc-cceeEEEECCcccCC-
Confidence 58999999999999999999999999999888664321 111100 00000000010 146899999999752
Q ss_pred ccCCCchhHHHHHHHHHHHhhhccccc----------cCCC-----cEEEEEecCCCC----CCcHHHHhhC
Q 001735 839 ARGGAFEHEATRRMRNEFMSAWDGLRS----------KESQ-----KILILGATNRPF----DLDDAVIRRL 891 (1019)
Q Consensus 839 ~r~~~~~~e~~~ril~~LL~~Ldgl~~----------~~~~-----~VLVIaTTN~p~----~LD~aLlrRF 891 (1019)
..++..|+..++.-.. .... .+.+|+|+|... .+++++++||
T Consensus 79 -----------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 79 -----------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp -----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred -----------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 2334444444442211 0111 389999999998 7999999998
No 190
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.92 E-value=2.8e-08 Score=113.03 Aligned_cols=159 Identities=23% Similarity=0.332 Sum_probs=97.6
Q ss_pred cccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------CCcEE-------
Q 001735 729 FDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA-------GANFI------- 794 (1019)
Q Consensus 729 fdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~el-------g~~fi------- 794 (1019)
|..|.|+++++..|.-.+..| ...++||.|++|+|||+|+++++..+ +.++-
T Consensus 3 f~~ivgq~~~~~al~~~~~~~--------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDP--------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred ccccccHHHHHHHHHHHhcCC--------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 788999999998876544221 12569999999999999999999876 22221
Q ss_pred --EEec-------------------cccch-----hhhhhH--HHHHH---HHHH--HHHhcCCeEEEeccchhhhhccC
Q 001735 795 --SITG-------------------STLTS-----KWFGDA--EKLTK---ALFS--FASKLAPVIIFVDEVDSLLGARG 841 (1019)
Q Consensus 795 --~Is~-------------------seL~s-----~~~Ge~--e~~I~---~lF~--~Ark~~PsIIfIDEID~L~~~r~ 841 (1019)
..+| .++-. ...|.. +..+. ..|. ...+....+||||||+.+...
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~-- 146 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDH-- 146 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHH--
Confidence 0000 01100 111211 01000 0000 001123479999999997322
Q ss_pred CCchhHHHHHHHHHHHhhhc---------cccccCCCcEEEEEecCCCC-CCcHHHHhhCCCCcccCCCCH-HHHHHHHH
Q 001735 842 GAFEHEATRRMRNEFMSAWD---------GLRSKESQKILILGATNRPF-DLDDAVIRRLPRRIYVDLPDA-ENRMKILR 910 (1019)
Q Consensus 842 ~~~~~e~~~ril~~LL~~Ld---------gl~~~~~~~VLVIaTTN~p~-~LD~aLlrRFd~~I~V~lPd~-eeR~eILk 910 (1019)
+...|+..|+ |.......++++|+|+|..+ .+.++++.||...+.++.|.. ++|.+|++
T Consensus 147 ----------~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~ 216 (337)
T TIGR02030 147 ----------LVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVE 216 (337)
T ss_pred ----------HHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHH
Confidence 2233333332 22222335788999988655 599999999999999998865 88999998
Q ss_pred HHH
Q 001735 911 IFL 913 (1019)
Q Consensus 911 ~~L 913 (1019)
...
T Consensus 217 ~~~ 219 (337)
T TIGR02030 217 RRT 219 (337)
T ss_pred hhh
Confidence 743
No 191
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.91 E-value=7.5e-08 Score=104.87 Aligned_cols=192 Identities=17% Similarity=0.161 Sum_probs=113.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC-cEE--EEecccc-----c---hhhhh-----h-HHHHHHHHH----HHHHhcC
Q 001735 766 KGILLFGPPGTGKTLLAKALATEAGA-NFI--SITGSTL-----T---SKWFG-----D-AEKLTKALF----SFASKLA 824 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~elg~-~fi--~Is~seL-----~---s~~~G-----e-~e~~I~~lF----~~Ark~~ 824 (1019)
..++|+||+|+|||++++.+++.+.. .++ .+....+ . ....| . .......+. .......
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 35899999999999999999998752 222 1111111 0 00011 1 111112221 2233456
Q ss_pred CeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCC--CCCC----cHHHHhhCCCCcccC
Q 001735 825 PVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNR--PFDL----DDAVIRRLPRRIYVD 898 (1019)
Q Consensus 825 PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~--p~~L----D~aLlrRFd~~I~V~ 898 (1019)
+.+|+|||++.+... . ...+..+.. ........+.|+.+... ...+ ...+.+|+...+.++
T Consensus 124 ~~vliiDe~~~l~~~--------~-~~~l~~l~~----~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~ 190 (269)
T TIGR03015 124 RALLVVDEAQNLTPE--------L-LEELRMLSN----FQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLG 190 (269)
T ss_pred CeEEEEECcccCCHH--------H-HHHHHHHhC----cccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCC
Confidence 789999999987311 1 111112211 11111222333333221 1111 124666887888999
Q ss_pred CCCHHHHHHHHHHHHhccCC-----CCccCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCC
Q 001735 899 LPDAENRMKILRIFLAHESL-----ESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKRGKNDAAPVLRPL 973 (1019)
Q Consensus 899 lPd~eeR~eILk~~L~~~~l-----~~dvdl~~LA~~TeG~SgaDL~~L~~~Aa~~Airr~l~~~~~~~~~~~~~~~~pL 973 (1019)
+.+.++..+++...+...+. .++..++.|+..+.|.. +.|..+|..|...|..+. ...|
T Consensus 191 ~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p-~~i~~l~~~~~~~a~~~~---------------~~~i 254 (269)
T TIGR03015 191 PLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP-RLINILCDRLLLSAFLEE---------------KREI 254 (269)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc-cHHHHHHHHHHHHHHHcC---------------CCCC
Confidence 99999999999988864331 23345788899999976 559999988887766531 1469
Q ss_pred CHHHHHHHHHhhC
Q 001735 974 KLEDFIQSKAKVG 986 (1019)
Q Consensus 974 T~eDF~~Al~kv~ 986 (1019)
+.+++..++..++
T Consensus 255 ~~~~v~~~~~~~~ 267 (269)
T TIGR03015 255 GGEEVREVIAEID 267 (269)
T ss_pred CHHHHHHHHHHhh
Confidence 9999999998875
No 192
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.90 E-value=1.9e-08 Score=123.27 Aligned_cols=160 Identities=26% Similarity=0.375 Sum_probs=101.8
Q ss_pred cccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------------------
Q 001735 729 FDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA------------------- 789 (1019)
Q Consensus 729 fdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~el------------------- 789 (1019)
|.+|+|++.++..|.-....+ ...+|||+|++|||||++|++|+..+
T Consensus 3 f~~ivGq~~~~~al~~~av~~--------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVDP--------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred cchhcChHHHHHHHHHHhhCC--------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 789999999998886554321 11469999999999999999999887
Q ss_pred ----------------CCcEEEEeccccchhhhhhH--HHHHH---HHHH--HHHhcCCeEEEeccchhhhhccCCCchh
Q 001735 790 ----------------GANFISITGSTLTSKWFGDA--EKLTK---ALFS--FASKLAPVIIFVDEVDSLLGARGGAFEH 846 (1019)
Q Consensus 790 ----------------g~~fi~Is~seL~s~~~Ge~--e~~I~---~lF~--~Ark~~PsIIfIDEID~L~~~r~~~~~~ 846 (1019)
..+|+.+.+.......+|.. +..+. ..+. ........|||||||+.+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~-------- 140 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDD-------- 140 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCH--------
Confidence 24666665543322223321 11110 0000 00011236999999999842
Q ss_pred HHHHHHHHHHHhhhcc---------ccccCCCcEEEEEecCCC-CCCcHHHHhhCCCCcccCCC-CHHHHHHHHHHHHh
Q 001735 847 EATRRMRNEFMSAWDG---------LRSKESQKILILGATNRP-FDLDDAVIRRLPRRIYVDLP-DAENRMKILRIFLA 914 (1019)
Q Consensus 847 e~~~ril~~LL~~Ldg---------l~~~~~~~VLVIaTTN~p-~~LD~aLlrRFd~~I~V~lP-d~eeR~eILk~~L~ 914 (1019)
.+.+.|+..|+. .......+++||+|+|.. ..+.+++++||+..+.++.| +.+++.++++..+.
T Consensus 141 ----~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~ 215 (633)
T TIGR02442 141 ----HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLA 215 (633)
T ss_pred ----HHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHh
Confidence 233444444431 111223568999999864 35889999999988888776 46788888876543
No 193
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.89 E-value=3.1e-08 Score=111.69 Aligned_cols=183 Identities=15% Similarity=0.169 Sum_probs=119.9
Q ss_pred ccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---------------
Q 001735 728 RFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN--------------- 792 (1019)
Q Consensus 728 tfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~--------------- 792 (1019)
.|++|.|++.+++.|...+.. -+-++.+||+||+|+||+++|.++|+.+-+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-------------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~ 68 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-------------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGN 68 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-------------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCC
Confidence 589999999999999998844 1334689999999999999999999986221
Q ss_pred ---EEEEeccccc-hh--------hhh-------h-HHHHHHHHHHHHHh----cCCeEEEeccchhhhhccCCCchhHH
Q 001735 793 ---FISITGSTLT-SK--------WFG-------D-AEKLTKALFSFASK----LAPVIIFVDEVDSLLGARGGAFEHEA 848 (1019)
Q Consensus 793 ---fi~Is~seL~-s~--------~~G-------e-~e~~I~~lF~~Ark----~~PsIIfIDEID~L~~~r~~~~~~e~ 848 (1019)
++.+.+.... ++ ..| . .-..++.+...+.. ....|++||++|.|..
T Consensus 69 hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~---------- 138 (314)
T PRK07399 69 HPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE---------- 138 (314)
T ss_pred CCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH----------
Confidence 1222221000 00 000 0 01234455444332 2357999999999832
Q ss_pred HHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCCCccCHHHHH
Q 001735 849 TRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELA 928 (1019)
Q Consensus 849 ~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA 928 (1019)
...|.|+..|+.. + +.++|.+|+.++.|-+.+++|+ ..+.|+.|+.++..+++......... +.++..++
T Consensus 139 --~aaNaLLK~LEEP---p--~~~fILi~~~~~~Ll~TI~SRc-q~i~f~~l~~~~~~~~L~~~~~~~~~--~~~~~~l~ 208 (314)
T PRK07399 139 --AAANALLKTLEEP---G--NGTLILIAPSPESLLPTIVSRC-QIIPFYRLSDEQLEQVLKRLGDEEIL--NINFPELL 208 (314)
T ss_pred --HHHHHHHHHHhCC---C--CCeEEEEECChHhCcHHHHhhc-eEEecCCCCHHHHHHHHHHhhccccc--hhHHHHHH
Confidence 2346777777553 2 3456667778899999999999 78899999999999998876432221 12346778
Q ss_pred HHhcCCCHHHHHHHHH
Q 001735 929 NATEGYSGSDLKNLCI 944 (1019)
Q Consensus 929 ~~TeG~SgaDL~~L~~ 944 (1019)
....| +++...+++.
T Consensus 209 ~~a~G-s~~~al~~l~ 223 (314)
T PRK07399 209 ALAQG-SPGAAIANIE 223 (314)
T ss_pred HHcCC-CHHHHHHHHH
Confidence 77777 4444444443
No 194
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.88 E-value=4.2e-08 Score=111.29 Aligned_cols=149 Identities=19% Similarity=0.242 Sum_probs=98.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCC------------------------cEEEEeccccchhhhhhHHHHHHHHHHH
Q 001735 764 PCKGILLFGPPGTGKTLLAKALATEAGA------------------------NFISITGSTLTSKWFGDAEKLTKALFSF 819 (1019)
Q Consensus 764 p~~gVLL~GPpGTGKT~LArAIA~elg~------------------------~fi~Is~seL~s~~~Ge~e~~I~~lF~~ 819 (1019)
.++.+||+||+|+|||++|.++|+.+.+ .++.+....- +.. -.-..++.+...
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~~--i~id~iR~l~~~ 97 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DKT--IKVDQVRELVSF 97 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CCC--CCHHHHHHHHHH
Confidence 4578999999999999999999998843 1233322110 000 012334444433
Q ss_pred HH----hcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHhhCCCCc
Q 001735 820 AS----KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRI 895 (1019)
Q Consensus 820 Ar----k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I 895 (1019)
+. .....|++||++|.|.. ...|.|+..++.- ...+++|.+|+.+..|.+.+++|+ ..+
T Consensus 98 ~~~~~~~~~~kv~iI~~a~~m~~------------~aaNaLLK~LEEP----p~~~~fiL~t~~~~~ll~TI~SRc-~~~ 160 (328)
T PRK05707 98 VVQTAQLGGRKVVLIEPAEAMNR------------NAANALLKSLEEP----SGDTVLLLISHQPSRLLPTIKSRC-QQQ 160 (328)
T ss_pred HhhccccCCCeEEEECChhhCCH------------HHHHHHHHHHhCC----CCCeEEEEEECChhhCcHHHHhhc-eee
Confidence 33 33457999999999842 3356777777652 356888899999999999999999 568
Q ss_pred ccCCCCHHHHHHHHHHHHhccCCCCccCHHHHHHHhcCCC
Q 001735 896 YVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYS 935 (1019)
Q Consensus 896 ~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeG~S 935 (1019)
.|++|+.++-.+++...... ..+.+...++..+.|-.
T Consensus 161 ~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~Gsp 197 (328)
T PRK05707 161 ACPLPSNEESLQWLQQALPE---SDERERIELLTLAGGSP 197 (328)
T ss_pred eCCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCCCH
Confidence 99999999888888754311 12223445566666633
No 195
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.87 E-value=1.9e-08 Score=117.30 Aligned_cols=143 Identities=21% Similarity=0.273 Sum_probs=84.9
Q ss_pred cccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--c-----EEEEecc--
Q 001735 729 FDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA--N-----FISITGS-- 799 (1019)
Q Consensus 729 fdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~--~-----fi~Is~s-- 799 (1019)
++++.+.++..+.+...+. ..++++|+||||||||++|+++|..+.. . ++.+...
T Consensus 174 l~d~~i~e~~le~l~~~L~----------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsyS 237 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT----------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYS 237 (459)
T ss_pred hhcccCCHHHHHHHHHHHh----------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeeccccc
Confidence 4455556666666654431 2357999999999999999999998842 1 2222221
Q ss_pred --ccchhhhhh--H----HHHHHHHHHHHHhc--CCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccc------
Q 001735 800 --TLTSKWFGD--A----EKLTKALFSFASKL--APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGL------ 863 (1019)
Q Consensus 800 --eL~s~~~Ge--~----e~~I~~lF~~Ark~--~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl------ 863 (1019)
+++..+... . ...+..+...|... .|.|||||||++--. .++..+++..++.-
T Consensus 238 YeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani-----------~kiFGel~~lLE~~~rg~~~ 306 (459)
T PRK11331 238 YEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANL-----------SKVFGEVMMLMEHDKRGENW 306 (459)
T ss_pred HHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCH-----------HHhhhhhhhhcccccccccc
Confidence 222111000 0 11223344555543 479999999987521 23334444444310
Q ss_pred ------------cccCCCcEEEEEecCCCC----CCcHHHHhhCCCCcccCC
Q 001735 864 ------------RSKESQKILILGATNRPF----DLDDAVIRRLPRRIYVDL 899 (1019)
Q Consensus 864 ------------~~~~~~~VLVIaTTN~p~----~LD~aLlrRFd~~I~V~l 899 (1019)
.-.-..++.||||+|..+ .+|.|++|||. .+.+.+
T Consensus 307 ~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF~-fi~i~p 357 (459)
T PRK11331 307 SVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFS-FIDIEP 357 (459)
T ss_pred ceeeeccccccccccCCCCeEEEEecCccccchhhccHHHHhhhh-eEEecC
Confidence 011235799999999887 69999999994 455543
No 196
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.87 E-value=2.2e-08 Score=111.44 Aligned_cols=148 Identities=24% Similarity=0.327 Sum_probs=98.1
Q ss_pred cccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC--------------------
Q 001735 731 DIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAG-------------------- 790 (1019)
Q Consensus 731 DIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg-------------------- 790 (1019)
++.+.+.+...+...+... + +.++.+||+||||+|||++|.++|+++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~---------~---~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~ 69 (325)
T COG0470 2 ELVPWQEAVKRLLVQALES---------G---RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIP 69 (325)
T ss_pred CcccchhHHHHHHHHHHhc---------C---CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHh
Confidence 4556666666666665321 1 2234699999999999999999999986
Q ss_pred ----CcEEEEeccccchhhhhhHHHHHHHHHHHHHh----cCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcc
Q 001735 791 ----ANFISITGSTLTSKWFGDAEKLTKALFSFASK----LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDG 862 (1019)
Q Consensus 791 ----~~fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark----~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldg 862 (1019)
..++.+++++..... -....++.+-..... ...-||+|||+|.+... ..+.++..+..
T Consensus 70 ~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~------------A~nallk~lEe 135 (325)
T COG0470 70 AGNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTED------------AANALLKTLEE 135 (325)
T ss_pred hcCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHH------------HHHHHHHHhcc
Confidence 467777777654421 122333333333222 34579999999998532 24555555543
Q ss_pred ccccCCCcEEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHH
Q 001735 863 LRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKIL 909 (1019)
Q Consensus 863 l~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eIL 909 (1019)
+..+..+|.+||.+..+-+.+++|+ ..+.|++|+...+....
T Consensus 136 ----p~~~~~~il~~n~~~~il~tI~SRc-~~i~f~~~~~~~~i~~~ 177 (325)
T COG0470 136 ----PPKNTRFILITNDPSKILPTIRSRC-QRIRFKPPSRLEAIAWL 177 (325)
T ss_pred ----CCCCeEEEEEcCChhhccchhhhcc-eeeecCCchHHHHHHHh
Confidence 3456888889999999999999999 57777765554444443
No 197
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.84 E-value=1.1e-08 Score=115.65 Aligned_cols=135 Identities=31% Similarity=0.505 Sum_probs=86.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch--hhhhhHHHHHH----HHHHHHH--hcCC--eEEEeccchh
Q 001735 766 KGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS--KWFGDAEKLTK----ALFSFAS--KLAP--VIIFVDEVDS 835 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s--~~~Ge~e~~I~----~lF~~Ar--k~~P--sIIfIDEID~ 835 (1019)
.++||.||||||||+||+++|..++.+|+.+.|..-+. +..|...-... ..|.... -... +|+++|||++
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInr 123 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINR 123 (329)
T ss_pred CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEecccc
Confidence 56999999999999999999999999999998864432 22222111100 0010000 0001 4999999988
Q ss_pred hhhccCCCchhHHHHHHHHHHHhhhcc-------cc-ccCCCcEEEEEecC-----CCCCCcHHHHhhCCCCcccCCC-C
Q 001735 836 LLGARGGAFEHEATRRMRNEFMSAWDG-------LR-SKESQKILILGATN-----RPFDLDDAVIRRLPRRIYVDLP-D 901 (1019)
Q Consensus 836 L~~~r~~~~~~e~~~ril~~LL~~Ldg-------l~-~~~~~~VLVIaTTN-----~p~~LD~aLlrRFd~~I~V~lP-d 901 (1019)
..+ .+.+.|+..|+. .. ..-...++||+|+| ....|++++++||...+.++.| +
T Consensus 124 a~p------------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~ 191 (329)
T COG0714 124 APP------------EVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDS 191 (329)
T ss_pred CCH------------HHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHhhEEEEEecCCCCc
Confidence 532 233444444432 22 23345788999999 4455899999999989999999 4
Q ss_pred HHHHHHHHHHH
Q 001735 902 AENRMKILRIF 912 (1019)
Q Consensus 902 ~eeR~eILk~~ 912 (1019)
..+...++...
T Consensus 192 ~~e~~~i~~~~ 202 (329)
T COG0714 192 EEEERIILARV 202 (329)
T ss_pred hHHHHHHHHhC
Confidence 44455444443
No 198
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.83 E-value=1.4e-08 Score=105.09 Aligned_cols=115 Identities=24% Similarity=0.295 Sum_probs=76.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCC----cEEEEeccccchhhhhhHHHHHHHHHHHH----HhcCCeEEEeccchh
Q 001735 764 PCKGILLFGPPGTGKTLLAKALATEAGA----NFISITGSTLTSKWFGDAEKLTKALFSFA----SKLAPVIIFVDEVDS 835 (1019)
Q Consensus 764 p~~gVLL~GPpGTGKT~LArAIA~elg~----~fi~Is~seL~s~~~Ge~e~~I~~lF~~A----rk~~PsIIfIDEID~ 835 (1019)
|..++||.||+|+|||.||+++|..+.. +++.++++++... ++....+..+...+ ......||||||||.
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 5567999999999999999999999996 9999999988761 11111122222111 111224999999999
Q ss_pred hhhccCCCchhHHHHHHHHHHHhhhccccc-------cCCCcEEEEEecCCCC
Q 001735 836 LLGARGGAFEHEATRRMRNEFMSAWDGLRS-------KESQKILILGATNRPF 881 (1019)
Q Consensus 836 L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~-------~~~~~VLVIaTTN~p~ 881 (1019)
..+. ...........+.+.||..|++-.- -.-.++++|+|+|--.
T Consensus 80 a~~~-~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 80 AHPS-NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp CSHT-TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred cccc-ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 8765 2222344445677888888874321 1335789999998644
No 199
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.82 E-value=1e-07 Score=108.18 Aligned_cols=148 Identities=16% Similarity=0.113 Sum_probs=100.7
Q ss_pred ccccccC-hHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001735 728 RFDDIGA-LEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 792 (1019)
Q Consensus 728 tfdDIgG-le~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~-------------- 792 (1019)
.|+.|.| ++.+++.|...+.. -+.++.+||+||+|+||+++|+++|+.+-+.
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c 69 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNC 69 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHH
Confidence 4777777 88899999887733 1345678999999999999999999986321
Q ss_pred ----------EEEEeccccchhhhhhHHHHHHHHHHHHH----hcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHh
Q 001735 793 ----------FISITGSTLTSKWFGDAEKLTKALFSFAS----KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 858 (1019)
Q Consensus 793 ----------fi~Is~seL~s~~~Ge~e~~I~~lF~~Ar----k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~ 858 (1019)
+..+... +.. -.-..++.+...+. .....|++|||+|.+. ....|.|+.
T Consensus 70 ~~~~~~~hpD~~~i~~~---~~~--i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~------------~~a~NaLLK 132 (329)
T PRK08058 70 KRIDSGNHPDVHLVAPD---GQS--IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT------------ASAANSLLK 132 (329)
T ss_pred HHHhcCCCCCEEEeccc---ccc--CCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC------------HHHHHHHHH
Confidence 2222111 000 01123333333332 2234699999999883 223467777
Q ss_pred hhccccccCCCcEEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHH
Q 001735 859 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILR 910 (1019)
Q Consensus 859 ~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk 910 (1019)
.|+.. +..+++|.+|+.+..|.+.+++|+ ..+.+..|+.++..++++
T Consensus 133 ~LEEP----p~~~~~Il~t~~~~~ll~TIrSRc-~~i~~~~~~~~~~~~~L~ 179 (329)
T PRK08058 133 FLEEP----SGGTTAILLTENKHQILPTILSRC-QVVEFRPLPPESLIQRLQ 179 (329)
T ss_pred HhcCC----CCCceEEEEeCChHhCcHHHHhhc-eeeeCCCCCHHHHHHHHH
Confidence 77653 345667778888889999999999 788999999888777765
No 200
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.82 E-value=4.6e-08 Score=103.94 Aligned_cols=174 Identities=22% Similarity=0.283 Sum_probs=110.3
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-CC----cEEEEecccc
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA-GA----NFISITGSTL 801 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~el-g~----~fi~Is~seL 801 (1019)
..+.||+|.++..+.|.-+.. .| .-++++|.||||||||+-+.++|+++ |- -+..+++++-
T Consensus 24 ~~l~dIVGNe~tv~rl~via~-----------~g---nmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASde 89 (333)
T KOG0991|consen 24 SVLQDIVGNEDTVERLSVIAK-----------EG---NMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDE 89 (333)
T ss_pred hHHHHhhCCHHHHHHHHHHHH-----------cC---CCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccc
Confidence 457899999999999877652 22 12579999999999999999999997 42 3566776653
Q ss_pred chhhhhhHHHHHHHHHHHHHh-cCC---eEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEec
Q 001735 802 TSKWFGDAEKLTKALFSFASK-LAP---VIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGAT 877 (1019)
Q Consensus 802 ~s~~~Ge~e~~I~~lF~~Ark-~~P---sIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTT 877 (1019)
.+ . ..-..--+.|..-+- .+| .||++||+|++... ...+.++++.-. + ....+..++
T Consensus 90 RG--I-DvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~g-----AQQAlRRtMEiy--------S---~ttRFalaC 150 (333)
T KOG0991|consen 90 RG--I-DVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAG-----AQQALRRTMEIY--------S---NTTRFALAC 150 (333)
T ss_pred cc--c-HHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhH-----HHHHHHHHHHHH--------c---ccchhhhhh
Confidence 32 1 122222334443332 233 49999999998532 233445544221 1 123477788
Q ss_pred CCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCC-CccCHHHHHHHhcCC
Q 001735 878 NRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGY 934 (1019)
Q Consensus 878 N~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeG~ 934 (1019)
|....+-+.+.+|+ ..+.+...+..+...-+....+.+.+. .+.-++.+....+|-
T Consensus 151 N~s~KIiEPIQSRC-AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GD 207 (333)
T KOG0991|consen 151 NQSEKIIEPIQSRC-AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGD 207 (333)
T ss_pred cchhhhhhhHHhhh-HhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccch
Confidence 99999999999988 456666666666555555555555543 333355555444443
No 201
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.79 E-value=4.1e-09 Score=111.50 Aligned_cols=45 Identities=47% Similarity=0.731 Sum_probs=36.5
Q ss_pred cccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 001735 729 FDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA 789 (1019)
Q Consensus 729 fdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~el 789 (1019)
|+||.|++..|.+|.-... + ..+|||+||||||||++|+++...+
T Consensus 2 f~dI~GQe~aKrAL~iAAa-----------G-----~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAA-----------G-----GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHH-----------C-----C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred hhhhcCcHHHHHHHHHHHc-----------C-----CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999977652 1 2689999999999999999998765
No 202
>PRK04132 replication factor C small subunit; Provisional
Probab=98.79 E-value=6e-08 Score=120.80 Aligned_cols=160 Identities=22% Similarity=0.210 Sum_probs=116.1
Q ss_pred CCceEEEEc--CCCChHHHHHHHHHHHh-----CCcEEEEeccccchhhhhhHHHHHHHHHHHHHhc------CCeEEEe
Q 001735 764 PCKGILLFG--PPGTGKTLLAKALATEA-----GANFISITGSTLTSKWFGDAEKLTKALFSFASKL------APVIIFV 830 (1019)
Q Consensus 764 p~~gVLL~G--PpGTGKT~LArAIA~el-----g~~fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark~------~PsIIfI 830 (1019)
|.-.-+..| |++.|||++|.|+|+++ +.+++.+++++..+. ..++.+...+... +..||||
T Consensus 563 ~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgi------d~IR~iIk~~a~~~~~~~~~~KVvII 636 (846)
T PRK04132 563 PGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGI------NVIREKVKEFARTKPIGGASFKIIFL 636 (846)
T ss_pred CchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccH------HHHHHHHHHHHhcCCcCCCCCEEEEE
Confidence 444567778 99999999999999998 568999999885321 2344443332222 2369999
Q ss_pred ccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHH
Q 001735 831 DEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILR 910 (1019)
Q Consensus 831 DEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk 910 (1019)
||+|.|... ..+.|+..++.. ...+.+|++||.+..+.+++++|| ..+.|+.|+.++....++
T Consensus 637 DEaD~Lt~~------------AQnALLk~lEep----~~~~~FILi~N~~~kIi~tIrSRC-~~i~F~~ls~~~i~~~L~ 699 (846)
T PRK04132 637 DEADALTQD------------AQQALRRTMEMF----SSNVRFILSCNYSSKIIEPIQSRC-AIFRFRPLRDEDIAKRLR 699 (846)
T ss_pred ECcccCCHH------------HHHHHHHHhhCC----CCCeEEEEEeCChhhCchHHhhhc-eEEeCCCCCHHHHHHHHH
Confidence 999998421 245566666542 346889999999999999999999 788999999999999999
Q ss_pred HHHhccCCC-CccCHHHHHHHhcCCCHHHHHHHHHHHH
Q 001735 911 IFLAHESLE-SGFQFNELANATEGYSGSDLKNLCIAAA 947 (1019)
Q Consensus 911 ~~L~~~~l~-~dvdl~~LA~~TeG~SgaDL~~L~~~Aa 947 (1019)
..+.++++. ++..+..|+..+.| +.+...++++.++
T Consensus 700 ~I~~~Egi~i~~e~L~~Ia~~s~G-DlR~AIn~Lq~~~ 736 (846)
T PRK04132 700 YIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAA 736 (846)
T ss_pred HHHHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 888876654 34457788888887 4444445555443
No 203
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.78 E-value=2.7e-07 Score=102.63 Aligned_cols=177 Identities=19% Similarity=0.287 Sum_probs=110.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccccchh---h-------------hhhHHHHHHHHHHHH
Q 001735 766 KGILLFGPPGTGKTLLAKALATEA---------GANFISITGSTLTSK---W-------------FGDAEKLTKALFSFA 820 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~el---------g~~fi~Is~seL~s~---~-------------~Ge~e~~I~~lF~~A 820 (1019)
.++||+|++|+|||++++.++... .+|++.+.++.--+. | .......-.++....
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~ll 141 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLL 141 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHH
Confidence 569999999999999999998765 257888776432111 0 112233344455566
Q ss_pred HhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecC--CCCCCcHHHHhhCCCCcccC
Q 001735 821 SKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATN--RPFDLDDAVIRRLPRRIYVD 898 (1019)
Q Consensus 821 rk~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN--~p~~LD~aLlrRFd~~I~V~ 898 (1019)
+...+-+|+|||++.++.... ...+ ++++.++.+.+.-.-+++.+||-. ..-.-|+.+.+||. .+.+|
T Consensus 142 r~~~vrmLIIDE~H~lLaGs~-----~~qr----~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~-~~~Lp 211 (302)
T PF05621_consen 142 RRLGVRMLIIDEFHNLLAGSY-----RKQR----EFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLASRFE-PFELP 211 (302)
T ss_pred HHcCCcEEEeechHHHhcccH-----HHHH----HHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHhccC-CccCC
Confidence 777889999999999864321 1223 334444444333334566666643 23346789999994 55555
Q ss_pred CCC-HHHHHHHHHHHHhccCCC--CccCH----HHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Q 001735 899 LPD-AENRMKILRIFLAHESLE--SGFQF----NELANATEGYSGSDLKNLCIAAAYRPVQE 953 (1019)
Q Consensus 899 lPd-~eeR~eILk~~L~~~~l~--~dvdl----~~LA~~TeG~SgaDL~~L~~~Aa~~Airr 953 (1019)
.-. .++-..++..+-...++. +.+.- ..|-.+++|.. ++|..++..|+..|++.
T Consensus 212 ~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~i-G~l~~ll~~aA~~AI~s 272 (302)
T PF05621_consen 212 RWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLI-GELSRLLNAAAIAAIRS 272 (302)
T ss_pred CCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCch-HHHHHHHHHHHHHHHhc
Confidence 522 234455666665544443 22332 44556778865 68999999999998875
No 204
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.76 E-value=1.6e-07 Score=114.49 Aligned_cols=51 Identities=27% Similarity=0.414 Sum_probs=43.0
Q ss_pred CcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc
Q 001735 726 GVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN 792 (1019)
Q Consensus 726 ~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~ 792 (1019)
..-|+++.|.++.+..++..+.. ..+++|+||||||||++++++|+.++..
T Consensus 14 ~~~~~~viG~~~a~~~l~~a~~~----------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 14 ERLIDQVIGQEEAVEIIKKAAKQ----------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hhhHhhccCHHHHHHHHHHHHHc----------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 35788999999999999887742 1379999999999999999999998643
No 205
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.75 E-value=4.9e-08 Score=110.58 Aligned_cols=66 Identities=38% Similarity=0.520 Sum_probs=45.9
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecccc
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAG--ANFISITGSTL 801 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg--~~fi~Is~seL 801 (1019)
...+.++|+.++.++.--.+.+.- .+ .-..+++||.||||||||+||-++|+++| .||+.++++++
T Consensus 21 ~~~~GlVGQ~~AReAagiiv~mIk--------~~-K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEi 88 (398)
T PF06068_consen 21 YIADGLVGQEKAREAAGIIVDMIK--------EG-KIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEI 88 (398)
T ss_dssp SEETTEES-HHHHHHHHHHHHHHH--------TT---TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG
T ss_pred eccccccChHHHHHHHHHHHHHHh--------cc-cccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEccccee
Confidence 345678999999998776665421 11 12347899999999999999999999996 78866665554
No 206
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.75 E-value=1.4e-07 Score=107.21 Aligned_cols=169 Identities=20% Similarity=0.270 Sum_probs=97.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhhH-----H-------HHHHHHHHHHHhcCCeEEEe
Q 001735 766 KGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGDA-----E-------KLTKALFSFASKLAPVIIFV 830 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~Ge~-----e-------~~I~~lF~~Ark~~PsIIfI 830 (1019)
.+|||+|++||||+++|++|.... +.||+.++|..+........ . ......|..| ...+|||
T Consensus 23 ~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a---~gGtL~L 99 (329)
T TIGR02974 23 RPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERA---DGGTLFL 99 (329)
T ss_pred CCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhC---CCCEEEe
Confidence 569999999999999999998765 57999999987643221100 0 0001123333 3589999
Q ss_pred ccchhhhhccCCCchhHHHHHHHHHHHhhhcccc-------ccCCCcEEEEEecCCC-------CCCcHHHHhhCCCCcc
Q 001735 831 DEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR-------SKESQKILILGATNRP-------FDLDDAVIRRLPRRIY 896 (1019)
Q Consensus 831 DEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~-------~~~~~~VLVIaTTN~p-------~~LD~aLlrRFd~~I~ 896 (1019)
|||+.|... . ...|+..++.-. ......+.||++|+.. ..+.+.+..||. .+.
T Consensus 100 dei~~L~~~--------~----Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl~-~~~ 166 (329)
T TIGR02974 100 DELATASLL--------V----QEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLDRLA-FDV 166 (329)
T ss_pred CChHhCCHH--------H----HHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHHHhc-chh
Confidence 999998422 2 223333332111 1112357888888653 235577777884 344
Q ss_pred cCCCCHHHHH----HHHHHHHhcc----CCC--CccCHHHHHHHh-cCC--CHHHHHHHHHHHHHHH
Q 001735 897 VDLPDAENRM----KILRIFLAHE----SLE--SGFQFNELANAT-EGY--SGSDLKNLCIAAAYRP 950 (1019)
Q Consensus 897 V~lPd~eeR~----eILk~~L~~~----~l~--~dvdl~~LA~~T-eG~--SgaDL~~L~~~Aa~~A 950 (1019)
+..|...+|. .++.+++... +.. ..+.-+.+.... ..| +.++|++++..|+..+
T Consensus 167 i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 167 ITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred cCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 5556555543 3555554432 111 123333332222 223 4589999998887653
No 207
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.74 E-value=5.1e-07 Score=104.17 Aligned_cols=229 Identities=20% Similarity=0.226 Sum_probs=146.3
Q ss_pred cccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccchh-
Q 001735 731 DIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA-----GANFISITGSTLTSK- 804 (1019)
Q Consensus 731 DIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~el-----g~~fi~Is~seL~s~- 804 (1019)
.+.|.+..+..+++++..++.. ....++++.|.||||||.+...+.... ....++++|.++...
T Consensus 151 ~l~gRe~e~~~v~~F~~~hle~----------~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLHLEL----------NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CccchHHHHHHHHHHHHhhhhc----------ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 4678889999999998776532 234679999999999999999887665 235688888765221
Q ss_pred -----hhh---------hHHHHHHHHHHH-HHhc-CCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCC
Q 001735 805 -----WFG---------DAEKLTKALFSF-ASKL-APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKES 868 (1019)
Q Consensus 805 -----~~G---------e~e~~I~~lF~~-Ark~-~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~ 868 (1019)
..+ ..+......|.. .... .+-||++||+|.|+...+ +.+..+..+...++
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~-------------~vLy~lFewp~lp~ 287 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQ-------------TVLYTLFEWPKLPN 287 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhccc-------------ceeeeehhcccCCc
Confidence 111 112222233322 2222 378999999999984432 22223333344467
Q ss_pred CcEEEEEecCCCCCCcHHHHh---h---CCCCcccCCCCHHHHHHHHHHHHhccCCCCc--cCHHHHHHHhcCCCHHHHH
Q 001735 869 QKILILGATNRPFDLDDAVIR---R---LPRRIYVDLPDAENRMKILRIFLAHESLESG--FQFNELANATEGYSGSDLK 940 (1019)
Q Consensus 869 ~~VLVIaTTN~p~~LD~aLlr---R---Fd~~I~V~lPd~eeR~eILk~~L~~~~l~~d--vdl~~LA~~TeG~SgaDL~ 940 (1019)
.++++||.+|..+.-|..|.+ + -+..+.|++++.++..+||+..+........ ..+..+|....|.|| |++
T Consensus 288 sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlR 366 (529)
T KOG2227|consen 288 SRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLR 366 (529)
T ss_pred ceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHH
Confidence 789999999998776665554 2 3467889999999999999999887665433 336677888888776 554
Q ss_pred ---HHHHHHHHHHHHHHHHHHHhcC-CCC----CCCCc-cCCCHHHHHHHHHhhCCC
Q 001735 941 ---NLCIAAAYRPVQELLEEERKRG-KND----AAPVL-RPLKLEDFIQSKAKVGPS 988 (1019)
Q Consensus 941 ---~L~~~Aa~~Airr~l~~~~~~~-~~~----~~~~~-~pLT~eDF~~Al~kv~PS 988 (1019)
.+|+.|...+ +.+.... ... ..+.. .+|.++++..++.++--+
T Consensus 367 kaLdv~R~aiEI~-----E~e~r~~~~~~l~~~~~p~~~~~v~~~~va~viSk~~~s 418 (529)
T KOG2227|consen 367 KALDVCRRAIEIA-----EIEKRKILDDPLSPGTSPEKKKKVGVEHVAAVISKVDGS 418 (529)
T ss_pred HHHHHHHHHHHHH-----HHHHhhccccCCCCCCCcccccccchHHHHHHhhhhccC
Confidence 3454444332 2222211 111 11111 457799999998887644
No 208
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.73 E-value=2.6e-07 Score=104.75 Aligned_cols=194 Identities=22% Similarity=0.241 Sum_probs=113.3
Q ss_pred ccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchh
Q 001735 728 RFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSK 804 (1019)
Q Consensus 728 tfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~s~ 804 (1019)
.+++++|.....+.+.+.+... .....+|||+|++||||+++|++|.... +.||+.++|..+...
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~------------a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~ 71 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRL------------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN 71 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHH------------hCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHH
Confidence 4677888888888877776442 1223569999999999999999998765 479999999986422
Q ss_pred h-----hhhHH-------HHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcccc-------c
Q 001735 805 W-----FGDAE-------KLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR-------S 865 (1019)
Q Consensus 805 ~-----~Ge~e-------~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~-------~ 865 (1019)
. +|... ......|.. ....+|||||||.|... +...|+..++.-. .
T Consensus 72 ~~~~~lfg~~~~~~~g~~~~~~g~l~~---a~gGtL~l~~i~~L~~~------------~Q~~L~~~l~~~~~~~~g~~~ 136 (326)
T PRK11608 72 LLDSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAPML------------VQEKLLRVIEYGELERVGGSQ 136 (326)
T ss_pred HHHHHHccccccccCCcccccCCchhc---cCCCeEEeCChhhCCHH------------HHHHHHHHHhcCcEEeCCCCc
Confidence 1 11000 000112222 23579999999998422 2223333332211 0
Q ss_pred cCCCcEEEEEecCCC-------CCCcHHHHhhCCCCcccCCCCHHHHH----HHHHHHHhcc----CCC--CccCHHHHH
Q 001735 866 KESQKILILGATNRP-------FDLDDAVIRRLPRRIYVDLPDAENRM----KILRIFLAHE----SLE--SGFQFNELA 928 (1019)
Q Consensus 866 ~~~~~VLVIaTTN~p-------~~LD~aLlrRFd~~I~V~lPd~eeR~----eILk~~L~~~----~l~--~dvdl~~LA 928 (1019)
.....+.||+||+.. ..+.+.+..||. .+.+.+|...+|. .++.+++... +.. ..++-+.+.
T Consensus 137 ~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~ 215 (326)
T PRK11608 137 PLQVNVRLVCATNADLPAMVAEGKFRADLLDRLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARE 215 (326)
T ss_pred eeeccEEEEEeCchhHHHHHHcCCchHHHHHhcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHH
Confidence 111247788888653 346677888883 3455556665554 3555554322 111 223333333
Q ss_pred HH-hcCC--CHHHHHHHHHHHHHH
Q 001735 929 NA-TEGY--SGSDLKNLCIAAAYR 949 (1019)
Q Consensus 929 ~~-TeG~--SgaDL~~L~~~Aa~~ 949 (1019)
.. ...| +.++|++++..|+..
T Consensus 216 ~L~~y~WPGNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 216 TLLNYRWPGNIRELKNVVERSVYR 239 (326)
T ss_pred HHHhCCCCcHHHHHHHHHHHHHHh
Confidence 22 2234 458999999888764
No 209
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.71 E-value=3e-07 Score=110.04 Aligned_cols=228 Identities=18% Similarity=0.227 Sum_probs=145.3
Q ss_pred ccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecccc
Q 001735 732 IGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA----------GANFISITGSTL 801 (1019)
Q Consensus 732 IgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~el----------g~~fi~Is~seL 801 (1019)
+.+.+.....|..++...+... + ....++|+|-||||||.++..+-.++ .+.++.|++-.+
T Consensus 398 LpcRe~E~~~I~~f~~~~i~~~-----~----~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l 468 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSFISDQ-----G----LGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRL 468 (767)
T ss_pred ccchhHHHHHHHHHHHhhcCCC-----C----CceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceee
Confidence 3456667777777776543320 1 11359999999999999999998865 367888888766
Q ss_pred chh----------hhhh------HHHHHHHHHHHH-HhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcccc
Q 001735 802 TSK----------WFGD------AEKLTKALFSFA-SKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR 864 (1019)
Q Consensus 802 ~s~----------~~Ge------~e~~I~~lF~~A-rk~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~ 864 (1019)
.+. +.|+ .-..+..-|... .+..++||+|||+|.|+...+. -|.+.++ ..
T Consensus 469 ~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~Qd------------VlYn~fd-Wp 535 (767)
T KOG1514|consen 469 ASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQD------------VLYNIFD-WP 535 (767)
T ss_pred cCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHH------------HHHHHhc-CC
Confidence 432 1111 122333444411 2345799999999999866421 2233333 34
Q ss_pred ccCCCcEEEEEecCCCCCCcH----HHHhhCC-CCcccCCCCHHHHHHHHHHHHhccCCCCccCHHHHHHHhcCCCH--H
Q 001735 865 SKESQKILILGATNRPFDLDD----AVIRRLP-RRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSG--S 937 (1019)
Q Consensus 865 ~~~~~~VLVIaTTN~p~~LD~----aLlrRFd-~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeG~Sg--a 937 (1019)
..++.+++||+..|..+.... .+-+|.+ ..+.|.+.+..+..+|+...+.......+-.++-+|+.....|| +
T Consensus 536 t~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaR 615 (767)
T KOG1514|consen 536 TLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDAR 615 (767)
T ss_pred cCCCCceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHH
Confidence 456778999998887654322 2333543 45778889999999999999887654444344555666655555 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHHhhCCCc
Q 001735 938 DLKNLCIAAAYRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQSKAKVGPSV 989 (1019)
Q Consensus 938 DL~~L~~~Aa~~Airr~l~~~~~~~~~~~~~~~~pLT~eDF~~Al~kv~PS~ 989 (1019)
.-..+|.+|+..|-.+.. . . .......|++.|+.+|+.++..+.
T Consensus 616 raldic~RA~Eia~~~~~-~----~---k~~~~q~v~~~~v~~Ai~em~~~~ 659 (767)
T KOG1514|consen 616 RALDICRRAAEIAEERNV-K----G---KLAVSQLVGILHVMEAINEMLASP 659 (767)
T ss_pred HHHHHHHHHHHHhhhhcc-c----c---cccccceeehHHHHHHHHHHhhhh
Confidence 455678877766554432 0 0 111224689999999999997654
No 210
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=1.6e-07 Score=103.89 Aligned_cols=74 Identities=26% Similarity=0.378 Sum_probs=61.0
Q ss_pred ccCCCcccccccccccccchhhHHHHHHhhhhcccCcccccccccccCCCCCceeeccCCChhHHHHHHHHHHHhhcCCc
Q 001735 171 IVPWEKINISWDTFPYYINENTKSLLVECVGSHLKHKKFTATFGARLTSSSGRILLRSVPGTELYRERLIRALARELQVP 250 (1019)
Q Consensus 171 v~~~~~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~~l~~~s~rILL~~~pgsE~Yqe~L~kALA~~~~a~ 250 (1019)
++|+.+..=-||+.=|= -+-|+-|++-|.+-|+-.+. +-..+|-+-++=|||.|||| .....|.||||+++-++
T Consensus 131 ~LPa~eF~glWEsLiyd--s~lK~~ll~Ya~s~l~fsek--~vntnlIt~NRliLlhGPPG--TGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 131 YLPAAEFDGLWESLIYD--SNLKERLLSYAASALLFSEK--KVNTNLITWNRLILLHGPPG--TGKTSLCKALAQKLSIR 204 (423)
T ss_pred eccchhhhhhHHHHhhc--ccHHHHHHHHHHHHHHHHhc--CCCCceeeeeeEEEEeCCCC--CChhHHHHHHHHhheee
Confidence 45555555567776555 67888899888888887775 45689999999999999999 79999999999999887
No 211
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.70 E-value=1.7e-07 Score=112.92 Aligned_cols=192 Identities=18% Similarity=0.193 Sum_probs=114.2
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccch
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTS 803 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~s 803 (1019)
.+|++++|.....+.+.+.+.... ....+|||+|++||||+++|++|.... +.+|+.++|..+..
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a------------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~ 260 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVA------------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE 260 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHh------------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH
Confidence 568889999988888887765421 223569999999999999999999875 57999999988743
Q ss_pred hhhhhHHHHHHHHHHHH---------------HhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcccc--c-
Q 001735 804 KWFGDAEKLTKALFSFA---------------SKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR--S- 865 (1019)
Q Consensus 804 ~~~Ge~e~~I~~lF~~A---------------rk~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~--~- 865 (1019)
.... ..+|... ......+||||||+.|... +...|+..++.-. .
T Consensus 261 ~~~~------~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~------------~Q~~Ll~~l~~~~~~~~ 322 (534)
T TIGR01817 261 TLLE------SELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPA------------FQAKLLRVLQEGEFERV 322 (534)
T ss_pred HHHH------HHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCHH------------HHHHHHHHHhcCcEEEC
Confidence 2211 1122110 1123579999999998422 2233343332211 0
Q ss_pred ----cCCCcEEEEEecCCC-------CCCcHHHHhhCCCCcccCCCCHHH----HHHHHHHHHhccC----CCCccCH--
Q 001735 866 ----KESQKILILGATNRP-------FDLDDAVIRRLPRRIYVDLPDAEN----RMKILRIFLAHES----LESGFQF-- 924 (1019)
Q Consensus 866 ----~~~~~VLVIaTTN~p-------~~LD~aLlrRFd~~I~V~lPd~ee----R~eILk~~L~~~~----l~~dvdl-- 924 (1019)
.....+.+|+||+.. ..+.+.+..|+. .+.+.+|...+ ...++.+++.... ....++-
T Consensus 323 ~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~-~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a 401 (534)
T TIGR01817 323 GGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRIN-VVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSA 401 (534)
T ss_pred CCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhc-CCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHH
Confidence 011247788888653 235566666774 34444454443 4455666655322 1122332
Q ss_pred -HHHHHHhcCCCHHHHHHHHHHHHHH
Q 001735 925 -NELANATEGYSGSDLKNLCIAAAYR 949 (1019)
Q Consensus 925 -~~LA~~TeG~SgaDL~~L~~~Aa~~ 949 (1019)
..|....=.-+.++|++++..|+..
T Consensus 402 ~~~L~~~~WPGNvrEL~~v~~~a~~~ 427 (534)
T TIGR01817 402 IRVLMSCKWPGNVRELENCLERTATL 427 (534)
T ss_pred HHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 3333322122558999999888764
No 212
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.70 E-value=2.9e-07 Score=110.33 Aligned_cols=167 Identities=23% Similarity=0.265 Sum_probs=97.2
Q ss_pred cccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-cEEEE---eccccchhhh
Q 001735 731 DIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA-NFISI---TGSTLTSKWF 806 (1019)
Q Consensus 731 DIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~-~fi~I---s~seL~s~~~ 806 (1019)
+|.|.+.+|..|.-.+..... .....+...+...+|||+|+||||||++|+++++.+.. .|+.. ++..+.....
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~--~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~ 281 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVH--KNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVT 281 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCc--cccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccce
Confidence 467888888777555432110 00111222334457999999999999999999998743 33321 2222211110
Q ss_pred hhH---HHHH-HHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhc---------cccccCCCcEEE
Q 001735 807 GDA---EKLT-KALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWD---------GLRSKESQKILI 873 (1019)
Q Consensus 807 Ge~---e~~I-~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ld---------gl~~~~~~~VLV 873 (1019)
... +..+ ...+. .....+++|||++.+... . ...|+..|+ |....-+.++.|
T Consensus 282 ~~~~~g~~~~~~G~l~---~A~~Gil~iDEi~~l~~~--------~----q~~L~e~me~~~i~i~k~G~~~~l~~~~~v 346 (509)
T smart00350 282 RDPETREFTLEGGALV---LADNGVCCIDEFDKMDDS--------D----RTAIHEAMEQQTISIAKAGITTTLNARCSV 346 (509)
T ss_pred EccCcceEEecCccEE---ecCCCEEEEechhhCCHH--------H----HHHHHHHHhcCEEEEEeCCEEEEecCCcEE
Confidence 000 0000 00011 123579999999998322 1 222222222 222223357889
Q ss_pred EEecCCCC-------------CCcHHHHhhCCCCcc-cCCCCHHHHHHHHHHHHh
Q 001735 874 LGATNRPF-------------DLDDAVIRRLPRRIY-VDLPDAENRMKILRIFLA 914 (1019)
Q Consensus 874 IaTTN~p~-------------~LD~aLlrRFd~~I~-V~lPd~eeR~eILk~~L~ 914 (1019)
|||+|..+ .|++++++||+..+. ++.|+.+...+|.++.+.
T Consensus 347 iAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 347 LAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred EEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHH
Confidence 99999752 599999999987544 478999999999988764
No 213
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=1.9e-07 Score=106.49 Aligned_cols=97 Identities=30% Similarity=0.484 Sum_probs=73.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch-hhhhh-HHHHHHHHHHHH----HhcCCeEEEeccchhhhhc
Q 001735 766 KGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS-KWFGD-AEKLTKALFSFA----SKLAPVIIFVDEVDSLLGA 839 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s-~~~Ge-~e~~I~~lF~~A----rk~~PsIIfIDEID~L~~~ 839 (1019)
.+|||.||+|+|||.||+.+|+-+++||.-.+|..|.. .|+|+ .|..|.++...| .+.+..|+||||+|.|...
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 46999999999999999999999999999999999965 57775 477788887776 3456789999999999844
Q ss_pred cCCCchh--HHHHHHHHHHHhhhcc
Q 001735 840 RGGAFEH--EATRRMRNEFMSAWDG 862 (1019)
Q Consensus 840 r~~~~~~--e~~~ril~~LL~~Ldg 862 (1019)
..+.... ..-.-+.+.||.+++|
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEG 331 (564)
T ss_pred CccccccccccchhHHHHHHHHhcc
Confidence 3221111 1123456677777765
No 214
>PRK12377 putative replication protein; Provisional
Probab=98.70 E-value=8.2e-08 Score=104.92 Aligned_cols=107 Identities=17% Similarity=0.240 Sum_probs=67.8
Q ss_pred cccccCCCCCCccccccc----ChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh--
Q 001735 716 VSAVVPPGEIGVRFDDIG----ALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA-- 789 (1019)
Q Consensus 716 ~~~ii~~~e~~vtfdDIg----Gle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~el-- 789 (1019)
...-|++.....+|+... |...+...+..++.. |.. ...+++|+||||||||+||.|||+++
T Consensus 60 ~~s~i~~~~~~~tFdnf~~~~~~~~~a~~~a~~~a~~-------~~~-----~~~~l~l~G~~GtGKThLa~AIa~~l~~ 127 (248)
T PRK12377 60 NRSGIQPLHRKCSFANYQVQNDGQRYALSQAKSIADE-------LMT-----GCTNFVFSGKPGTGKNHLAAAIGNRLLA 127 (248)
T ss_pred HHcCCCcccccCCcCCcccCChhHHHHHHHHHHHHHH-------HHh-----cCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 344456666677888874 333344455544432 111 23579999999999999999999988
Q ss_pred -CCcEEEEeccccchhhhhhHH--HHHHHHHHHHHhcCCeEEEeccchhh
Q 001735 790 -GANFISITGSTLTSKWFGDAE--KLTKALFSFASKLAPVIIFVDEVDSL 836 (1019)
Q Consensus 790 -g~~fi~Is~seL~s~~~Ge~e--~~I~~lF~~Ark~~PsIIfIDEID~L 836 (1019)
|..++.++.++++........ .....++... ....+|+|||++..
T Consensus 128 ~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~ 175 (248)
T PRK12377 128 KGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQ 175 (248)
T ss_pred cCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 678888888877654322110 0111222222 35689999999764
No 215
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.69 E-value=7.5e-08 Score=110.96 Aligned_cols=196 Identities=20% Similarity=0.253 Sum_probs=113.6
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccccc
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA----GANFISITGSTLT 802 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~el----g~~fi~Is~seL~ 802 (1019)
..+++++|-....+.+.+.+.. + .....+|||+|++||||+++|++|.... +.||+.++|+.+.
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~-------~-----ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKA-------Y-----APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHh-------h-----CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 4577888888877777776643 1 1223679999999999999999997443 6799999998875
Q ss_pred hhhhhh------------HHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcc-----c--
Q 001735 803 SKWFGD------------AEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDG-----L-- 863 (1019)
Q Consensus 803 s~~~Ge------------~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldg-----l-- 863 (1019)
...... ....-..+|+.| ...+||+|||..+-... ...++..++. +
T Consensus 143 en~~~~eLFG~~kGaftGa~~~k~Glfe~A---~GGtLfLDEI~~LP~~~------------Q~kLl~~le~g~~~rvG~ 207 (403)
T COG1221 143 ENLQEAELFGHEKGAFTGAQGGKAGLFEQA---NGGTLFLDEIHRLPPEG------------QEKLLRVLEEGEYRRVGG 207 (403)
T ss_pred cCHHHHHHhccccceeecccCCcCchheec---CCCEEehhhhhhCCHhH------------HHHHHHHHHcCceEecCC
Confidence 432110 111112233333 24799999999984221 1233333332 1
Q ss_pred cccCCCcEEEEEecCCC--CCCcH--HHHh-hCCCCcccCCCCHHHH----HHHHHHHHh----ccCCCCccCHHHHHHH
Q 001735 864 RSKESQKILILGATNRP--FDLDD--AVIR-RLPRRIYVDLPDAENR----MKILRIFLA----HESLESGFQFNELANA 930 (1019)
Q Consensus 864 ~~~~~~~VLVIaTTN~p--~~LD~--aLlr-RFd~~I~V~lPd~eeR----~eILk~~L~----~~~l~~dvdl~~LA~~ 930 (1019)
.......|.+|++|+.. ..+-. .+.+ ++... |.+|...+| ..++.+++. +.......+..++...
T Consensus 208 ~~~~~~dVRli~AT~~~l~~~~~~g~dl~~rl~~~~--I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~ 285 (403)
T COG1221 208 SQPRPVDVRLICATTEDLEEAVLAGADLTRRLNILT--ITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRA 285 (403)
T ss_pred CCCcCCCceeeeccccCHHHHHHhhcchhhhhcCce--ecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHH
Confidence 12234568888888652 22223 4444 45444 445655555 334445444 3333322222222222
Q ss_pred hcCC----CHHHHHHHHHHHHHHHH
Q 001735 931 TEGY----SGSDLKNLCIAAAYRPV 951 (1019)
Q Consensus 931 TeG~----SgaDL~~L~~~Aa~~Ai 951 (1019)
...| +.++|++++..++..+-
T Consensus 286 L~~y~~pGNirELkN~Ve~~~~~~~ 310 (403)
T COG1221 286 LLAYDWPGNIRELKNLVERAVAQAS 310 (403)
T ss_pred HHhCCCCCcHHHHHHHHHHHHHHhc
Confidence 2222 56999999999887763
No 216
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.68 E-value=1.8e-07 Score=113.70 Aligned_cols=137 Identities=21% Similarity=0.322 Sum_probs=87.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEeccccchhhhhhH--HHHHH-H--HHHH--HHhcCCeEEEeccchhh
Q 001735 766 KGILLFGPPGTGKTLLAKALATEAG--ANFISITGSTLTSKWFGDA--EKLTK-A--LFSF--ASKLAPVIIFVDEVDSL 836 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~elg--~~fi~Is~seL~s~~~Ge~--e~~I~-~--lF~~--Ark~~PsIIfIDEID~L 836 (1019)
.+|||.|+||||||++|++++..+. .+|+.+.........+|.. +..+. . .|.. ..+....|||||||+.+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 5799999999999999999999875 4688877532222222321 01000 0 0000 00112369999999998
Q ss_pred hhccCCCchhHHHHHHHHHHHhhhc---------cccccCCCcEEEEEecCCCC---CCcHHHHhhCCCCcccC-CCCHH
Q 001735 837 LGARGGAFEHEATRRMRNEFMSAWD---------GLRSKESQKILILGATNRPF---DLDDAVIRRLPRRIYVD-LPDAE 903 (1019)
Q Consensus 837 ~~~r~~~~~~e~~~ril~~LL~~Ld---------gl~~~~~~~VLVIaTTN~p~---~LD~aLlrRFd~~I~V~-lPd~e 903 (1019)
.. .+.+.|+..|+ |.......++.||+|+|..+ .|.++++.||...+.+. .|+.+
T Consensus 97 ~~------------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~~ 164 (589)
T TIGR02031 97 DD------------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQD 164 (589)
T ss_pred CH------------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCHH
Confidence 42 22334444443 22112234688999988765 69999999999877765 46788
Q ss_pred HHHHHHHHHHh
Q 001735 904 NRMKILRIFLA 914 (1019)
Q Consensus 904 eR~eILk~~L~ 914 (1019)
+|.+|++.++.
T Consensus 165 er~eil~~~~~ 175 (589)
T TIGR02031 165 LRVEIVRRERC 175 (589)
T ss_pred HHHHHHHHHHH
Confidence 89999988763
No 217
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.67 E-value=1.5e-07 Score=116.65 Aligned_cols=196 Identities=17% Similarity=0.288 Sum_probs=115.5
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccch
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTS 803 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~s 803 (1019)
..|++++|.....+.+.+.+... .....+|||+|++|||||++|++|.... +.+|+.++|..+..
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~------------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~ 440 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMV------------AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA 440 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHH------------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh
Confidence 56889999998888887776541 1223569999999999999999998865 67999999987643
Q ss_pred hh-----hhhH-------HHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcccc-------
Q 001735 804 KW-----FGDA-------EKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR------- 864 (1019)
Q Consensus 804 ~~-----~Ge~-------e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~------- 864 (1019)
.. +|.. .......|..| ..++||||||+.+-.. . ...|+..++.-.
T Consensus 441 ~~~~~~lfg~~~~~~~g~~~~~~g~le~a---~~GtL~Ldei~~L~~~--------~----Q~~L~~~l~~~~~~~~g~~ 505 (686)
T PRK15429 441 GLLESDLFGHERGAFTGASAQRIGRFELA---DKSSLFLDEVGDMPLE--------L----QPKLLRVLQEQEFERLGSN 505 (686)
T ss_pred hHhhhhhcCcccccccccccchhhHHHhc---CCCeEEEechhhCCHH--------H----HHHHHHHHHhCCEEeCCCC
Confidence 21 1110 00111233333 3589999999998322 2 223333332110
Q ss_pred ccCCCcEEEEEecCCCC-------CCcHHHHhhCCCCcccCCCCHHHHHH----HHHHHHhcc----CCC-CccCHHHHH
Q 001735 865 SKESQKILILGATNRPF-------DLDDAVIRRLPRRIYVDLPDAENRMK----ILRIFLAHE----SLE-SGFQFNELA 928 (1019)
Q Consensus 865 ~~~~~~VLVIaTTN~p~-------~LD~aLlrRFd~~I~V~lPd~eeR~e----ILk~~L~~~----~l~-~dvdl~~LA 928 (1019)
......+.+|++|+..- .+...+..|+ ..+.+.+|...+|.+ ++++++.+. +.. ..+.-+.+.
T Consensus 506 ~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~ 584 (686)
T PRK15429 506 KIIQTDVRLIAATNRDLKKMVADREFRSDLYYRL-NVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLR 584 (686)
T ss_pred CcccceEEEEEeCCCCHHHHHHcCcccHHHHhcc-CeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHH
Confidence 01123577888887642 2344455565 345566777766654 455554432 111 112322222
Q ss_pred HH-hcCC--CHHHHHHHHHHHHHHH
Q 001735 929 NA-TEGY--SGSDLKNLCIAAAYRP 950 (1019)
Q Consensus 929 ~~-TeG~--SgaDL~~L~~~Aa~~A 950 (1019)
.. ...| +.++|++++..|+..+
T Consensus 585 ~L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 585 TLSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhC
Confidence 22 2233 5589999999887643
No 218
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.66 E-value=1.4e-07 Score=113.25 Aligned_cols=195 Identities=19% Similarity=0.261 Sum_probs=112.5
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccch
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTS 803 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~s 803 (1019)
.+|++|.|.....+.+.+.+... . ....+|||+|++||||+++|++|.+.. +.||+.++|..+..
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~-------A-----~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e 276 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLY-------A-----RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAE 276 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHH-------h-----CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCCh
Confidence 56899999999888888877442 1 223569999999999999999998765 67999999987743
Q ss_pred hhh-----hhHH--------HHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcccc------
Q 001735 804 KWF-----GDAE--------KLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR------ 864 (1019)
Q Consensus 804 ~~~-----Ge~e--------~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~------ 864 (1019)
... |..+ ..-..+|+.| ....||||||+.|... . ...|+..+..-.
T Consensus 277 ~lleseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~Lp~~--------~----Q~~Ll~~L~~~~~~r~g~ 341 (526)
T TIGR02329 277 SLLEAELFGYEEGAFTGARRGGRTGLIEAA---HRGTLFLDEIGEMPLP--------L----QTRLLRVLEEREVVRVGG 341 (526)
T ss_pred hHHHHHhcCCcccccccccccccccchhhc---CCceEEecChHhCCHH--------H----HHHHHHHHhcCcEEecCC
Confidence 221 1000 0011233333 2479999999998322 2 223333332110
Q ss_pred -ccCCCcEEEEEecCCCC-------CCcHHHHhhCCCCcccCCCCHHHHHH----HHHHHHhccCCC--CccCHHHHH--
Q 001735 865 -SKESQKILILGATNRPF-------DLDDAVIRRLPRRIYVDLPDAENRMK----ILRIFLAHESLE--SGFQFNELA-- 928 (1019)
Q Consensus 865 -~~~~~~VLVIaTTN~p~-------~LD~aLlrRFd~~I~V~lPd~eeR~e----ILk~~L~~~~l~--~dvdl~~LA-- 928 (1019)
......+.+|++|+..- .+.+.+..|+. .+.+.+|...+|.+ ++.+++...... ..+.-+.+.
T Consensus 342 ~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~-~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~ 420 (526)
T TIGR02329 342 TEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLS-ILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVL 420 (526)
T ss_pred CceeeecceEEeccCCCHHHHhhhcchhHHHHHhcC-CcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHh
Confidence 01112357888886542 23334445663 45566666655543 455555533211 112212211
Q ss_pred ------HHhcCC--CHHHHHHHHHHHHHH
Q 001735 929 ------NATEGY--SGSDLKNLCIAAAYR 949 (1019)
Q Consensus 929 ------~~TeG~--SgaDL~~L~~~Aa~~ 949 (1019)
-....| +.++|++++.+++..
T Consensus 421 ~~~~~~L~~y~WPGNvrEL~nvier~~i~ 449 (526)
T TIGR02329 421 AGVADPLQRYPWPGNVRELRNLVERLALE 449 (526)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 112334 448999998887654
No 219
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.66 E-value=1.4e-07 Score=110.80 Aligned_cols=152 Identities=19% Similarity=0.253 Sum_probs=87.2
Q ss_pred ccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEecc-ccchhhhhh
Q 001735 732 IGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA--NFISITGS-TLTSKWFGD 808 (1019)
Q Consensus 732 IgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~--~fi~Is~s-eL~s~~~Ge 808 (1019)
|.|.+++++.+...+. ...+|||+||||||||++|++++..++. +|..+.+. ....+.+|.
T Consensus 22 i~gre~vI~lll~aal----------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~ 85 (498)
T PRK13531 22 LYERSHAIRLCLLAAL----------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 85 (498)
T ss_pred ccCcHHHHHHHHHHHc----------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCc
Confidence 5677777777766541 1256999999999999999999998743 44433332 111222232
Q ss_pred H-HHHH--HHHHHHHHhc---CCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcccc-------ccCCCcEEEEE
Q 001735 809 A-EKLT--KALFSFASKL---APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR-------SKESQKILILG 875 (1019)
Q Consensus 809 ~-e~~I--~~lF~~Ark~---~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~-------~~~~~~VLVIa 875 (1019)
. -... ...|...... ...|||+|||..+. ..+.+.|+..|..-. .+-+.+++++
T Consensus 86 l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ras------------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~- 152 (498)
T PRK13531 86 LSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAG------------PAILNTLLTAINERRFRNGAHEEKIPMRLLVT- 152 (498)
T ss_pred HHHhhhhhcCchhhhcCCccccccEEeecccccCC------------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEE-
Confidence 1 0000 1222211111 23499999998653 334556666652211 1112234444
Q ss_pred ecCCCCC---CcHHHHhhCCCCcccCCCC-HHHHHHHHHHH
Q 001735 876 ATNRPFD---LDDAVIRRLPRRIYVDLPD-AENRMKILRIF 912 (1019)
Q Consensus 876 TTN~p~~---LD~aLlrRFd~~I~V~lPd-~eeR~eILk~~ 912 (1019)
|||.... ..+++..||...+.+|+|+ .++-.+++...
T Consensus 153 ATN~LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 153 ASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred ECCCCcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 4464322 3458999998889999996 46657777653
No 220
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.66 E-value=1.7e-07 Score=112.43 Aligned_cols=195 Identities=19% Similarity=0.290 Sum_probs=113.6
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHH-----------hCCcEEE
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATE-----------AGANFIS 795 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~e-----------lg~~fi~ 795 (1019)
.+|++|.|.....+.+.+.+... . ....+|||+|++||||+++|++|.+. .+.||+.
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~-------A-----~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~ 283 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLY-------A-----RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVA 283 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHH-------h-----CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEE
Confidence 46889999999888888877442 1 22356999999999999999999887 3679999
Q ss_pred Eeccccchhhh-----hhHH--------HHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcc
Q 001735 796 ITGSTLTSKWF-----GDAE--------KLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDG 862 (1019)
Q Consensus 796 Is~seL~s~~~-----Ge~e--------~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldg 862 (1019)
++|..+..... |..+ ..-..+|+.| ....||||||+.|... . ...|+..++.
T Consensus 284 inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~Lp~~--------~----Q~kLl~~L~e 348 (538)
T PRK15424 284 VNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA---HGGTLFLDEIGEMPLP--------L----QTRLLRVLEE 348 (538)
T ss_pred eecccCChhhHHHHhcCCccccccCccccccCCchhcc---CCCEEEEcChHhCCHH--------H----HHHHHhhhhc
Confidence 99988743221 1000 0011233333 3479999999998422 2 2233333322
Q ss_pred cc-------ccCCCcEEEEEecCCCC-------CCcHHHHhhCCCCcccCCCCHHHHHH----HHHHHHhccC--CCCcc
Q 001735 863 LR-------SKESQKILILGATNRPF-------DLDDAVIRRLPRRIYVDLPDAENRMK----ILRIFLAHES--LESGF 922 (1019)
Q Consensus 863 l~-------~~~~~~VLVIaTTN~p~-------~LD~aLlrRFd~~I~V~lPd~eeR~e----ILk~~L~~~~--l~~dv 922 (1019)
-. ..-...+.||++||..- .+.+.+..|+ ..+.+.+|...+|.+ ++.+++.+.. ....+
T Consensus 349 ~~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL-~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~ 427 (538)
T PRK15424 349 KEVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRL-SILRLQLPPLRERVADILPLAESFLKQSLAALSAPF 427 (538)
T ss_pred CeEEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHh-cCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCC
Confidence 10 01112467888887642 1333455566 345666676666543 5555555421 11112
Q ss_pred CHHHH--------HHHhcCC--CHHHHHHHHHHHHHH
Q 001735 923 QFNEL--------ANATEGY--SGSDLKNLCIAAAYR 949 (1019)
Q Consensus 923 dl~~L--------A~~TeG~--SgaDL~~L~~~Aa~~ 949 (1019)
.-..+ +-....| +.++|++++.+++..
T Consensus 428 ~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~ 464 (538)
T PRK15424 428 SAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALF 464 (538)
T ss_pred CHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 21111 1112233 458999999888763
No 221
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.65 E-value=1.2e-06 Score=99.17 Aligned_cols=144 Identities=12% Similarity=0.146 Sum_probs=97.4
Q ss_pred hHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------------------
Q 001735 735 LEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN---------------------- 792 (1019)
Q Consensus 735 le~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~---------------------- 792 (1019)
+....+.|...+.. -+.++.+||+||+|+||+++|.++|..+-+.
T Consensus 7 ~~~~~~~l~~~~~~-------------~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~H 73 (325)
T PRK06871 7 LQPTYQQITQAFQQ-------------GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNH 73 (325)
T ss_pred hHHHHHHHHHHHHc-------------CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 45556666665532 1345789999999999999999999987321
Q ss_pred --EEEEeccccchhhhhhHHHHHHHHHHHH----HhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcccccc
Q 001735 793 --FISITGSTLTSKWFGDAEKLTKALFSFA----SKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSK 866 (1019)
Q Consensus 793 --fi~Is~seL~s~~~Ge~e~~I~~lF~~A----rk~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~ 866 (1019)
|+.+.+.+ ++.. ....++.+-..+ ......|++||++|.|. ....|.||..|+.
T Consensus 74 PD~~~i~p~~--~~~I--~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~------------~~AaNaLLKtLEE---- 133 (325)
T PRK06871 74 PDFHILEPID--NKDI--GVDQVREINEKVSQHAQQGGNKVVYIQGAERLT------------EAAANALLKTLEE---- 133 (325)
T ss_pred CCEEEEcccc--CCCC--CHHHHHHHHHHHhhccccCCceEEEEechhhhC------------HHHHHHHHHHhcC----
Confidence 22232210 1111 123344443333 33344699999999984 2235677777765
Q ss_pred CCCcEEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHH
Q 001735 867 ESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIF 912 (1019)
Q Consensus 867 ~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~ 912 (1019)
+...+++|.+|+.++.|.+.+++|+ ..+.+++|+.++..+.|...
T Consensus 134 Pp~~~~fiL~t~~~~~llpTI~SRC-~~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 134 PRPNTYFLLQADLSAALLPTIYSRC-QTWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred CCCCeEEEEEECChHhCchHHHhhc-eEEeCCCCCHHHHHHHHHHH
Confidence 3456888889999999999999999 67889999998888877754
No 222
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.64 E-value=7.4e-08 Score=113.02 Aligned_cols=199 Identities=22% Similarity=0.292 Sum_probs=116.5
Q ss_pred CCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 001735 725 IGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTL 801 (1019)
Q Consensus 725 ~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL 801 (1019)
...+|++|+|-......+.+.+... .....+|||.|.+||||..+|++|-+.+ +.||+.++|+.+
T Consensus 240 a~y~f~~Iig~S~~m~~~~~~akr~------------A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAi 307 (560)
T COG3829 240 AKYTFDDIIGESPAMLRVLELAKRI------------AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAI 307 (560)
T ss_pred cccchhhhccCCHHHHHHHHHHHhh------------cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccC
Confidence 3578999999998888887766331 2334679999999999999999998876 689999999876
Q ss_pred chhhhhh-HHHHHHHHHHHHHhc---------CCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcc-----c--c
Q 001735 802 TSKWFGD-AEKLTKALFSFASKL---------APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDG-----L--R 864 (1019)
Q Consensus 802 ~s~~~Ge-~e~~I~~lF~~Ark~---------~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldg-----l--~ 864 (1019)
-.....+ .=.+....|.-|.+. ....||+|||..|-- .+...||..|.. + .
T Consensus 308 Pe~LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl------------~LQaKLLRVLQEkei~rvG~t 375 (560)
T COG3829 308 PETLLESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMPL------------PLQAKLLRVLQEKEIERVGGT 375 (560)
T ss_pred CHHHHHHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccCCH------------HHHHHHHHHHhhceEEecCCC
Confidence 3321110 001112233333332 237999999988731 122233333321 1 1
Q ss_pred ccCCCcEEEEEecCCCC--C-----CcHHHHhhCCCCcccCCCCHHHHHH----HHHHHHhc----cCCC-CccCHHHHH
Q 001735 865 SKESQKILILGATNRPF--D-----LDDAVIRRLPRRIYVDLPDAENRMK----ILRIFLAH----ESLE-SGFQFNELA 928 (1019)
Q Consensus 865 ~~~~~~VLVIaTTN~p~--~-----LD~aLlrRFd~~I~V~lPd~eeR~e----ILk~~L~~----~~l~-~dvdl~~LA 928 (1019)
..-.-.|.||+|||+.- . +-..|.-|. .++.+.+|...+|.+ +..+++.+ .+.. ..+.-+.++
T Consensus 376 ~~~~vDVRIIAATN~nL~~~i~~G~FReDLYYRL-NV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~ 454 (560)
T COG3829 376 KPIPVDVRIIAATNRNLEKMIAEGTFREDLYYRL-NVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALA 454 (560)
T ss_pred CceeeEEEEEeccCcCHHHHHhcCcchhhheeee-ceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHH
Confidence 11234688999999741 1 222222255 355666777666544 44444442 1111 222223333
Q ss_pred HH-hcCC--CHHHHHHHHHHHHH
Q 001735 929 NA-TEGY--SGSDLKNLCIAAAY 948 (1019)
Q Consensus 929 ~~-TeG~--SgaDL~~L~~~Aa~ 948 (1019)
.. ...| +.++|.+++..|+.
T Consensus 455 ~L~~y~WPGNVRELeNviER~v~ 477 (560)
T COG3829 455 LLLRYDWPGNVRELENVIERAVN 477 (560)
T ss_pred HHHhCCCCchHHHHHHHHHHHHh
Confidence 22 2233 45899999998875
No 223
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.64 E-value=5.9e-07 Score=109.52 Aligned_cols=193 Identities=13% Similarity=0.168 Sum_probs=110.4
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEE-Eecc---ccc
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFIS-ITGS---TLT 802 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~-Is~s---eL~ 802 (1019)
.+++++.|.++.++.++.++..... + ..+...++|+||||||||++++++|.+++..++. ++.. ...
T Consensus 81 ~~ldel~~~~~ki~~l~~~l~~~~~--------~-~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~ 151 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETWLKAQVL--------E-NAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQK 151 (637)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhccc--------c-cCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcccc
Confidence 5789999999999999888744211 1 2334569999999999999999999999866543 1111 000
Q ss_pred hhh------------hhhHHHHHHHHHHHHHh----------cCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHh-h
Q 001735 803 SKW------------FGDAEKLTKALFSFASK----------LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS-A 859 (1019)
Q Consensus 803 s~~------------~Ge~e~~I~~lF~~Ark----------~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~-~ 859 (1019)
..+ +.........+...+.. ....|||||||+.++.. . ...+..++. .
T Consensus 152 ~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-~--------~~~lq~lLr~~ 222 (637)
T TIGR00602 152 NDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-D--------TRALHEILRWK 222 (637)
T ss_pred cccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-h--------HHHHHHHHHHH
Confidence 000 01122333344444431 24579999999987532 1 112333333 1
Q ss_pred hccccccCCCcEEEEEecC-CCC----------C----CcHHHHh--hCCCCcccCCCCHHHHHHHHHHHHhccCCC--C
Q 001735 860 WDGLRSKESQKILILGATN-RPF----------D----LDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLE--S 920 (1019)
Q Consensus 860 Ldgl~~~~~~~VLVIaTTN-~p~----------~----LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~l~--~ 920 (1019)
.. ... ++.+|++++ .+. . |.+++++ |. ..|.|.+.+.....+.|+.++..+... .
T Consensus 223 ~~----e~~-~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~~~ 296 (637)
T TIGR00602 223 YV----SIG-RCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKNGE 296 (637)
T ss_pred hh----cCC-CceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhcccc
Confidence 11 111 233333332 221 1 3367776 44 468899999999888888888764321 1
Q ss_pred c------cCHHHHHHHhcCCCHHHHHHHHHHHH
Q 001735 921 G------FQFNELANATEGYSGSDLKNLCIAAA 947 (1019)
Q Consensus 921 d------vdl~~LA~~TeG~SgaDL~~L~~~Aa 947 (1019)
+ ..+..|+.. +.+|++.++..--
T Consensus 297 ~~~~p~~~~l~~I~~~----s~GDiRsAIn~LQ 325 (637)
T TIGR00602 297 KIKVPKKTSVELLCQG----CSGDIRSAINSLQ 325 (637)
T ss_pred ccccCCHHHHHHHHHh----CCChHHHHHHHHH
Confidence 1 234455553 4457776665433
No 224
>PRK08116 hypothetical protein; Validated
Probab=98.63 E-value=1.1e-07 Score=105.08 Aligned_cols=129 Identities=19% Similarity=0.243 Sum_probs=74.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhhH----HHHHHHHHHHHHhcCCeEEEeccchhhh
Q 001735 765 CKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGDA----EKLTKALFSFASKLAPVIIFVDEVDSLL 837 (1019)
Q Consensus 765 ~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~Ge~----e~~I~~lF~~Ark~~PsIIfIDEID~L~ 837 (1019)
..+++|+|++|||||+||.|||+++ +.+++.++.++++....... ......++... ....+|+|||+....
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l--~~~dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSL--VNADLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHh--cCCCEEEEecccCCC
Confidence 3579999999999999999999986 78899999887765432211 01111222222 235799999996421
Q ss_pred hccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCC-CC----CcHHHHhhC---CCCcccCCCCHHHHHHHH
Q 001735 838 GARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP-FD----LDDAVIRRL---PRRIYVDLPDAENRMKIL 909 (1019)
Q Consensus 838 ~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p-~~----LD~aLlrRF---d~~I~V~lPd~eeR~eIL 909 (1019)
. . ......|...++.... ....+|.|||.+ .. ++..+.+|+ ...+.+.-|+ -|.++.
T Consensus 192 ~-------t---~~~~~~l~~iin~r~~---~~~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d--~R~~~~ 256 (268)
T PRK08116 192 D-------T---EWAREKVYNIIDSRYR---KGLPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKS--YRKEIA 256 (268)
T ss_pred C-------C---HHHHHHHHHHHHHHHH---CCCCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcC--hhHHHH
Confidence 1 1 1122334444443321 122366677654 33 456777774 2233444444 354444
Q ss_pred H
Q 001735 910 R 910 (1019)
Q Consensus 910 k 910 (1019)
+
T Consensus 257 ~ 257 (268)
T PRK08116 257 K 257 (268)
T ss_pred H
Confidence 4
No 225
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.61 E-value=6.2e-07 Score=110.25 Aligned_cols=192 Identities=15% Similarity=0.197 Sum_probs=111.7
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccch
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTS 803 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~s 803 (1019)
.+|+++.|.......+.+.+.... ....+|||+|++||||+++|++|.+.. +.||+.++|..+..
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a------------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAA------------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHh------------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 468888888887777766654321 123459999999999999999998876 47999999988742
Q ss_pred hhhhhHHHHHHHHHHHH------------HhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcccc-c-cC--
Q 001735 804 KWFGDAEKLTKALFSFA------------SKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR-S-KE-- 867 (1019)
Q Consensus 804 ~~~Ge~e~~I~~lF~~A------------rk~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~-~-~~-- 867 (1019)
.. ....+|..+ ......+||||||+.|... . ...|+..++.-. . ..
T Consensus 390 ~~------~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~--------~----Q~~Ll~~l~~~~~~~~~~~ 451 (638)
T PRK11388 390 EA------LAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSPE--------L----QSALLQVLKTGVITRLDSR 451 (638)
T ss_pred HH------HHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCHH--------H----HHHHHHHHhcCcEEeCCCC
Confidence 11 111222211 1123579999999998422 1 223333332211 0 01
Q ss_pred ---CCcEEEEEecCCC-------CCCcHHHHhhCCCCcccCCCCHHHHH----HHHHHHHhcc----CCCCccCHHHHHH
Q 001735 868 ---SQKILILGATNRP-------FDLDDAVIRRLPRRIYVDLPDAENRM----KILRIFLAHE----SLESGFQFNELAN 929 (1019)
Q Consensus 868 ---~~~VLVIaTTN~p-------~~LD~aLlrRFd~~I~V~lPd~eeR~----eILk~~L~~~----~l~~dvdl~~LA~ 929 (1019)
.-.+.||+||+.. ..+.+.+.-|+ ..+.+.+|...+|. .++..++... .....+.-+.+..
T Consensus 452 ~~~~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~ 530 (638)
T PRK11388 452 RLIPVDVRVIATTTADLAMLVEQNRFSRQLYYAL-HAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALAR 530 (638)
T ss_pred ceEEeeEEEEEeccCCHHHHHhcCCChHHHhhhh-ceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHH
Confidence 1246788888764 22444555566 34566667766664 3455554432 1111233233322
Q ss_pred Hh-cCC--CHHHHHHHHHHHHHH
Q 001735 930 AT-EGY--SGSDLKNLCIAAAYR 949 (1019)
Q Consensus 930 ~T-eG~--SgaDL~~L~~~Aa~~ 949 (1019)
.. ..| +.++|++++..|+..
T Consensus 531 L~~y~WPGNvreL~~~l~~~~~~ 553 (638)
T PRK11388 531 LVSYRWPGNDFELRSVIENLALS 553 (638)
T ss_pred HHcCCCCChHHHHHHHHHHHHHh
Confidence 22 222 458999999887754
No 226
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.60 E-value=3.2e-07 Score=105.20 Aligned_cols=163 Identities=25% Similarity=0.347 Sum_probs=103.2
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEE---
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA-------GANFISI--- 796 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~el-------g~~fi~I--- 796 (1019)
..|.-+.|++..+..|.-.... ..-.++||.|+.|||||++++|||.-+ |++|-.=
T Consensus 14 ~pf~aivGqd~lk~aL~l~av~--------------P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~ 79 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAVD--------------PQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDD 79 (423)
T ss_pred cchhhhcCchHHHHHHhhhhcc--------------cccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCC
Confidence 4577788999988877543211 223579999999999999999999987 2222100
Q ss_pred ---ecc-------------------ccchhhhhhHHHHH------HHHHH-HHHhcC--------CeEEEeccchhhhhc
Q 001735 797 ---TGS-------------------TLTSKWFGDAEKLT------KALFS-FASKLA--------PVIIFVDEVDSLLGA 839 (1019)
Q Consensus 797 ---s~s-------------------eL~s~~~Ge~e~~I------~~lF~-~Ark~~--------PsIIfIDEID~L~~~ 839 (1019)
.|. .++....+.++..+ .+... .-+... -.|+||||+..|-
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~-- 157 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLD-- 157 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEecccccc--
Confidence 000 01111122233311 11111 111112 3699999998873
Q ss_pred cCCCchhHHHHHHHHHHHhhh---------ccccccCCCcEEEEEecCCCC-CCcHHHHhhCCCCcccCCC-CHHHHHHH
Q 001735 840 RGGAFEHEATRRMRNEFMSAW---------DGLRSKESQKILILGATNRPF-DLDDAVIRRLPRRIYVDLP-DAENRMKI 908 (1019)
Q Consensus 840 r~~~~~~e~~~ril~~LL~~L---------dgl~~~~~~~VLVIaTTN~p~-~LD~aLlrRFd~~I~V~lP-d~eeR~eI 908 (1019)
.++.+.||..+ +|+.-....++++|||+|.-. .|-+.|++||...+.+..| +.++|.+|
T Consensus 158 ----------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~I 227 (423)
T COG1239 158 ----------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEI 227 (423)
T ss_pred ----------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHH
Confidence 23344444333 344444556899999999874 5999999999999998765 78999999
Q ss_pred HHHHHhc
Q 001735 909 LRIFLAH 915 (1019)
Q Consensus 909 Lk~~L~~ 915 (1019)
.+..+..
T Consensus 228 i~r~~~f 234 (423)
T COG1239 228 IRRRLAF 234 (423)
T ss_pred HHHHHHh
Confidence 9987765
No 227
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.60 E-value=9.3e-07 Score=106.02 Aligned_cols=196 Identities=17% Similarity=0.226 Sum_probs=114.9
Q ss_pred ccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchh
Q 001735 728 RFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSK 804 (1019)
Q Consensus 728 tfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~s~ 804 (1019)
.+.+++|.....+.+.+.+... .....+|||+|++||||+++|++|.... +.+|+.++|..+...
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~------------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~ 252 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVV------------AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPES 252 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHH------------hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChH
Confidence 3567788888888877776441 1223569999999999999999998875 579999999887432
Q ss_pred hh-----hhHH-------HHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcccc-------c
Q 001735 805 WF-----GDAE-------KLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR-------S 865 (1019)
Q Consensus 805 ~~-----Ge~e-------~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~-------~ 865 (1019)
.. |... ......|..| ...+|||||||.|... . ...|+..++.-. .
T Consensus 253 ~~e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L~~~--------~----Q~~Ll~~l~~~~~~~~g~~~ 317 (509)
T PRK05022 253 LAESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGELPLA--------L----QAKLLRVLQYGEIQRVGSDR 317 (509)
T ss_pred HHHHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhCCHH--------H----HHHHHHHHhcCCEeeCCCCc
Confidence 11 1000 0001123332 3578999999998422 2 223333332211 0
Q ss_pred cCCCcEEEEEecCCC-------CCCcHHHHhhCCCCcccCCCCHHHHHH----HHHHHHhccC----C-CCccCHHHHHH
Q 001735 866 KESQKILILGATNRP-------FDLDDAVIRRLPRRIYVDLPDAENRMK----ILRIFLAHES----L-ESGFQFNELAN 929 (1019)
Q Consensus 866 ~~~~~VLVIaTTN~p-------~~LD~aLlrRFd~~I~V~lPd~eeR~e----ILk~~L~~~~----l-~~dvdl~~LA~ 929 (1019)
.....+.||++|+.. ..+.+.+..|+. .+.+.+|...+|.+ ++++++.... . ...+.-+.+..
T Consensus 318 ~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~ 396 (509)
T PRK05022 318 SLRVDVRVIAATNRDLREEVRAGRFRADLYHRLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAA 396 (509)
T ss_pred ceecceEEEEecCCCHHHHHHcCCccHHHHhccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHH
Confidence 111257888888764 235566666763 45566676666543 4444544321 1 12233333332
Q ss_pred Hh-cCC--CHHHHHHHHHHHHHHHH
Q 001735 930 AT-EGY--SGSDLKNLCIAAAYRPV 951 (1019)
Q Consensus 930 ~T-eG~--SgaDL~~L~~~Aa~~Ai 951 (1019)
.. ..| +.++|++++..|+..+-
T Consensus 397 L~~y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 397 LLAYDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred HHhCCCCCcHHHHHHHHHHHHHhcC
Confidence 22 233 55899999999887653
No 228
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.60 E-value=1.2e-06 Score=99.88 Aligned_cols=152 Identities=15% Similarity=0.181 Sum_probs=98.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCC------------------------cEEEEecccc-chhhhhhHHHHHHHHH
Q 001735 763 RPCKGILLFGPPGTGKTLLAKALATEAGA------------------------NFISITGSTL-TSKWFGDAEKLTKALF 817 (1019)
Q Consensus 763 ~p~~gVLL~GPpGTGKT~LArAIA~elg~------------------------~fi~Is~seL-~s~~~Ge~e~~I~~lF 817 (1019)
+.+..+||+||+|+||+++|.++|..+-+ .+..+.+..- ..-.+++....+..+.
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~ 101 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLY 101 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHh
Confidence 34578999999999999999999998732 1222322110 0011223333333343
Q ss_pred HHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHhhCCCCccc
Q 001735 818 SFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYV 897 (1019)
Q Consensus 818 ~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V 897 (1019)
.........|++||++|.|. ....|.||..|+. +..+.++|.+|+.++.|.+.+++|+. .+.+
T Consensus 102 ~~~~~g~~kV~iI~~ae~m~------------~~AaNaLLKtLEE----Pp~~t~fiL~t~~~~~lLpTIrSRCq-~~~~ 164 (334)
T PRK07993 102 EHARLGGAKVVWLPDAALLT------------DAAANALLKTLEE----PPENTWFFLACREPARLLATLRSRCR-LHYL 164 (334)
T ss_pred hccccCCceEEEEcchHhhC------------HHHHHHHHHHhcC----CCCCeEEEEEECChhhChHHHHhccc-cccC
Confidence 33444455799999999984 2235677777765 34578888899999999999999994 6899
Q ss_pred CCCCHHHHHHHHHHHHhccCCCCccCHHHHHHHhcCCC
Q 001735 898 DLPDAENRMKILRIFLAHESLESGFQFNELANATEGYS 935 (1019)
Q Consensus 898 ~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeG~S 935 (1019)
+.|+.++..+.+... .++. ..+...++..+.|-.
T Consensus 165 ~~~~~~~~~~~L~~~---~~~~-~~~a~~~~~la~G~~ 198 (334)
T PRK07993 165 APPPEQYALTWLSRE---VTMS-QDALLAALRLSAGAP 198 (334)
T ss_pred CCCCHHHHHHHHHHc---cCCC-HHHHHHHHHHcCCCH
Confidence 999988888777532 1222 122344555666533
No 229
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.58 E-value=2.2e-08 Score=98.65 Aligned_cols=113 Identities=27% Similarity=0.383 Sum_probs=57.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc-ccc-hhhhhhHH-HHHHHHHHHHH-hcCCeEEEeccchhhhhccCC
Q 001735 767 GILLFGPPGTGKTLLAKALATEAGANFISITGS-TLT-SKWFGDAE-KLTKALFSFAS-KLAPVIIFVDEVDSLLGARGG 842 (1019)
Q Consensus 767 gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~s-eL~-s~~~Ge~e-~~I~~lF~~Ar-k~~PsIIfIDEID~L~~~r~~ 842 (1019)
+|||+|+||+|||++|+++|..+|..|..|.+. +++ ++..|..- ..-...|...+ -.-..|+++|||.+..++
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNrappk--- 77 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRAPPK--- 77 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS-HH---
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccCCHH---
Confidence 589999999999999999999999999888764 332 22222100 00000000000 001259999999886433
Q ss_pred CchhHHHHHHHHHHHhhhc-------cccccCCCcEEEEEecCCCC-----CCcHHHHhhC
Q 001735 843 AFEHEATRRMRNEFMSAWD-------GLRSKESQKILILGATNRPF-----DLDDAVIRRL 891 (1019)
Q Consensus 843 ~~~~e~~~ril~~LL~~Ld-------gl~~~~~~~VLVIaTTN~p~-----~LD~aLlrRF 891 (1019)
+.+.|+..|. +....-.++++||||-|+.+ .|++++++||
T Consensus 78 ---------tQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF 129 (131)
T PF07726_consen 78 ---------TQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRF 129 (131)
T ss_dssp ---------HHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTS
T ss_pred ---------HHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhccc
Confidence 3344444433 22223445789999999876 4899999998
No 230
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.58 E-value=7.6e-07 Score=107.01 Aligned_cols=196 Identities=19% Similarity=0.259 Sum_probs=113.2
Q ss_pred CcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc
Q 001735 726 GVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLT 802 (1019)
Q Consensus 726 ~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~ 802 (1019)
..+|++++|.....+.+.+.+... . ....+|||+|++||||+++|+++.... +.||+.++|+.+.
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~-------A-----~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKL-------A-----MLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHH-------h-----CCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 467999999888777776655331 1 122459999999999999999987655 4799999998875
Q ss_pred hhhh-----hhHH-------HHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccc--cc---
Q 001735 803 SKWF-----GDAE-------KLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGL--RS--- 865 (1019)
Q Consensus 803 s~~~-----Ge~e-------~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl--~~--- 865 (1019)
.... |... .....+|+.| ....||||||+.|... .. ..|+..+..- ..
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~a---~~GtL~LdeI~~L~~~--------~Q----~~Ll~~l~~~~~~~~g~ 332 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQA---NGGSVLLDEIGEMSPR--------MQ----AKLLRFLNDGTFRRVGE 332 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhhc---CCCEEEEeChhhCCHH--------HH----HHHHHHHhcCCcccCCC
Confidence 3221 1000 0011223333 3578999999998432 22 2233333211 11
Q ss_pred --cCCCcEEEEEecCCC-------CCCcHHHHhhCCCCcccCCCCHHHHH----HHHHHHHhc----cCC-CCccCHHHH
Q 001735 866 --KESQKILILGATNRP-------FDLDDAVIRRLPRRIYVDLPDAENRM----KILRIFLAH----ESL-ESGFQFNEL 927 (1019)
Q Consensus 866 --~~~~~VLVIaTTN~p-------~~LD~aLlrRFd~~I~V~lPd~eeR~----eILk~~L~~----~~l-~~dvdl~~L 927 (1019)
.....+.||+||+.+ ..+.+.+..|+. .+.+.+|...+|. .++.+++.. .+. ...+.-+.+
T Consensus 333 ~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~ 411 (520)
T PRK10820 333 DHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLN 411 (520)
T ss_pred CcceeeeeEEEEecCCCHHHHHHcCCccHHHHhhcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHH
Confidence 011246788888654 225566777874 3566666665554 344444432 221 123333333
Q ss_pred HHHh-cCC--CHHHHHHHHHHHHHH
Q 001735 928 ANAT-EGY--SGSDLKNLCIAAAYR 949 (1019)
Q Consensus 928 A~~T-eG~--SgaDL~~L~~~Aa~~ 949 (1019)
.... ..| +.++|++++..|+..
T Consensus 412 ~~L~~y~WPGNvreL~nvl~~a~~~ 436 (520)
T PRK10820 412 TVLTRYGWPGNVRQLKNAIYRALTQ 436 (520)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHHh
Confidence 3332 223 458999998888764
No 231
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.57 E-value=3.1e-07 Score=100.22 Aligned_cols=106 Identities=22% Similarity=0.277 Sum_probs=67.2
Q ss_pred ccccCCCCCCcccccccCh----HHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---
Q 001735 717 SAVVPPGEIGVRFDDIGAL----EDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA--- 789 (1019)
Q Consensus 717 ~~ii~~~e~~vtfdDIgGl----e~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~el--- 789 (1019)
...+++.....+|++.... ..+...+.+++.. |. ....+++|+|+||||||+|+.|||+++
T Consensus 59 ~s~i~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~-------~~-----~~~~~~~l~G~~GtGKThLa~aia~~l~~~ 126 (244)
T PRK07952 59 RSGIRPLHQNCSFENYRVECEGQMNALSKARQYVEE-------FD-----GNIASFIFSGKPGTGKNHLAAAICNELLLR 126 (244)
T ss_pred HcCCCccccCCccccccCCCchHHHHHHHHHHHHHh-------hc-----cCCceEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3445665566788886422 2233444444321 11 112479999999999999999999998
Q ss_pred CCcEEEEeccccchhhhhhH---HHHHHHHHHHHHhcCCeEEEeccchhh
Q 001735 790 GANFISITGSTLTSKWFGDA---EKLTKALFSFASKLAPVIIFVDEVDSL 836 (1019)
Q Consensus 790 g~~fi~Is~seL~s~~~Ge~---e~~I~~lF~~Ark~~PsIIfIDEID~L 836 (1019)
|..++.++.+++........ ......++.... ...+|+|||++..
T Consensus 127 g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 127 GKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred CCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCC
Confidence 77888888888765433211 111223333322 5689999999875
No 232
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.55 E-value=3.9e-07 Score=108.65 Aligned_cols=146 Identities=24% Similarity=0.306 Sum_probs=86.2
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC----------------
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAG---------------- 790 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg---------------- 790 (1019)
..|+||.|+..+++.+.-.+ ....+++|.||||||||+++++++..+-
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa----------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~ 252 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA----------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSL 252 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc----------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccc
Confidence 47899999998877665432 2236799999999999999999986431
Q ss_pred ------------CcEEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHh
Q 001735 791 ------------ANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 858 (1019)
Q Consensus 791 ------------~~fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~ 858 (1019)
.||....++......+|.....-...+..| ...+|||||++.+. ..++..|+.
T Consensus 253 ~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA---~~GvLfLDEi~e~~------------~~~~~~L~~ 317 (499)
T TIGR00368 253 VGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLA---HNGVLFLDELPEFK------------RSVLDALRE 317 (499)
T ss_pred hhhhccccccccCCccccccccchhhhhCCccccchhhhhcc---CCCeEecCChhhCC------------HHHHHHHHH
Confidence 122221111111111111100111122333 34899999999863 223334444
Q ss_pred hhccc---------cccCCCcEEEEEecCCC-----C------------------CCcHHHHhhCCCCcccCCCCHH
Q 001735 859 AWDGL---------RSKESQKILILGATNRP-----F------------------DLDDAVIRRLPRRIYVDLPDAE 903 (1019)
Q Consensus 859 ~Ldgl---------~~~~~~~VLVIaTTN~p-----~------------------~LD~aLlrRFd~~I~V~lPd~e 903 (1019)
.|+.- ......++.+|+++|.- . .+...+++||+..+.++.++..
T Consensus 318 ~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~ 394 (499)
T TIGR00368 318 PIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPE 394 (499)
T ss_pred HHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHH
Confidence 44321 11122468899999852 1 4777888999988888876644
No 233
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.55 E-value=3.9e-07 Score=106.79 Aligned_cols=200 Identities=20% Similarity=0.279 Sum_probs=121.7
Q ss_pred ccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchh
Q 001735 728 RFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSK 804 (1019)
Q Consensus 728 tfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~s~ 804 (1019)
.+.+++|....++++.+.+... .....+|||+|++||||..+|++|-... +.||+.++|..+...
T Consensus 139 ~~~~liG~S~am~~l~~~i~kv------------A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~ 206 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKV------------APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN 206 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHH------------hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH
Confidence 4667889999999988887542 1233569999999999999999998876 579999999877433
Q ss_pred hh-----hhH-------HHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHH-hhhcccc--ccCCC
Q 001735 805 WF-----GDA-------EKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFM-SAWDGLR--SKESQ 869 (1019)
Q Consensus 805 ~~-----Ge~-------e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL-~~Ldgl~--~~~~~ 869 (1019)
.. |.. ...-...|+.| ....||||||..|-- +...+++..+- ..+..+- ..-.-
T Consensus 207 l~ESELFGhekGAFTGA~~~r~G~fE~A---~GGTLfLDEI~~mpl--------~~Q~kLLRvLqe~~~~rvG~~~~i~v 275 (464)
T COG2204 207 LLESELFGHEKGAFTGAITRRIGRFEQA---NGGTLFLDEIGEMPL--------ELQVKLLRVLQEREFERVGGNKPIKV 275 (464)
T ss_pred HHHHHhhcccccCcCCcccccCcceeEc---CCceEEeeccccCCH--------HHHHHHHHHHHcCeeEecCCCcccce
Confidence 21 100 01111233333 347999999998732 22222222211 1111111 11223
Q ss_pred cEEEEEecCCC-------CCCcHHHHhhCCCCcccCCCCHHHHHH----HHHHHHhc----cCC-CCccCHHHHHHHh-c
Q 001735 870 KILILGATNRP-------FDLDDAVIRRLPRRIYVDLPDAENRMK----ILRIFLAH----ESL-ESGFQFNELANAT-E 932 (1019)
Q Consensus 870 ~VLVIaTTN~p-------~~LD~aLlrRFd~~I~V~lPd~eeR~e----ILk~~L~~----~~l-~~dvdl~~LA~~T-e 932 (1019)
.|-||++||.. ..+-+.|.-|+ .++.+..|...+|.+ ++.+++.+ .+. ...+.-+.++.+. .
T Consensus 276 dvRiIaaT~~dL~~~v~~G~FReDLyyRL-nV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y 354 (464)
T COG2204 276 DVRIIAATNRDLEEEVAAGRFREDLYYRL-NVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAY 354 (464)
T ss_pred eeEEEeecCcCHHHHHHcCCcHHHHHhhh-ccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhC
Confidence 58899999874 12334555577 567777888777655 45555543 221 2344445554443 4
Q ss_pred CCCH--HHHHHHHHHHHHHHH
Q 001735 933 GYSG--SDLKNLCIAAAYRPV 951 (1019)
Q Consensus 933 G~Sg--aDL~~L~~~Aa~~Ai 951 (1019)
.|.| ++|+|++..++..+-
T Consensus 355 ~WPGNVREL~N~ver~~il~~ 375 (464)
T COG2204 355 DWPGNVRELENVVERAVILSE 375 (464)
T ss_pred CCChHHHHHHHHHHHHHhcCC
Confidence 4544 899999999876553
No 234
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.54 E-value=1.2e-06 Score=100.05 Aligned_cols=63 Identities=21% Similarity=0.253 Sum_probs=48.8
Q ss_pred ccc-cccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-------cEEEEec
Q 001735 728 RFD-DIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA-------NFISITG 798 (1019)
Q Consensus 728 tfd-DIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~-------~fi~Is~ 798 (1019)
-|+ ++.|+++++.++.+++..... +.-...+.++|+||||+|||+||++||+.++. +++.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a~--------g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAAQ--------GLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 366 899999999998887755321 11223467899999999999999999999965 7777765
No 235
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=7.2e-07 Score=101.02 Aligned_cols=98 Identities=12% Similarity=0.200 Sum_probs=68.7
Q ss_pred HHHHHHHHHhh-cCCeEEEEcCchhhhhcccCCccHHHHHHHHHHHHhcC---CCCEEEEecccCCCCCccccccccccc
Q 001735 473 AMEALCEVLHS-TQPLIVYFPDSSLWLSRAVPRCNRKEFVRKVEEMFDQL---SGPVVLICGQNKNETGPKEKEKFTMIL 548 (1019)
Q Consensus 473 ~i~~L~e~~~~-~~p~Iiff~eid~~~~~~~~~~~~~~~~s~~~~~l~~l---~g~v~vI~~~~~~d~~~~~~~~~~~~~ 548 (1019)
.|..||.-+++ ..-+++|+||.|-++...-.....+.--+.|-++|=.- +-.+++.
T Consensus 430 kiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLv-------------------- 489 (630)
T KOG0742|consen 430 KIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLV-------------------- 489 (630)
T ss_pred HHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEE--------------------
Confidence 77888888877 58899999999999643211112222333444433221 2222222
Q ss_pred cccccccCCCCchhhhhcccccCCCcchHHHHhcccceEEEcCCChHHHHHHHHHHHHHH
Q 001735 549 PNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYNLFTNVLSIHPPKEEDLLRTFNKQVEED 608 (1019)
Q Consensus 549 ~~~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~rrFe~~~eI~LPdee~Rl~Il~Iht~k~ 608 (1019)
=+||||..+|-|+..||+-.+|||||-+|.|..+|+..+.+-
T Consensus 490 ------------------lAtNrpgdlDsAV~DRide~veFpLPGeEERfkll~lYlnky 531 (630)
T KOG0742|consen 490 ------------------LATNRPGDLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKY 531 (630)
T ss_pred ------------------eccCCccchhHHHHhhhhheeecCCCChHHHHHHHHHHHHHH
Confidence 257778889999999999999999999999999999887764
No 236
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.54 E-value=4.5e-07 Score=92.87 Aligned_cols=133 Identities=23% Similarity=0.290 Sum_probs=85.8
Q ss_pred ChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC----------------------
Q 001735 734 ALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA---------------------- 791 (1019)
Q Consensus 734 Gle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~---------------------- 791 (1019)
|++++.+.|...+.. -+.+..+||+||+|+||+++|.++|+.+-.
T Consensus 1 gq~~~~~~L~~~~~~-------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~ 67 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNH 67 (162)
T ss_dssp S-HHHHHHHHHHHHC-------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-C
T ss_pred CcHHHHHHHHHHHHc-------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccC
Confidence 677888888887743 234567999999999999999999998721
Q ss_pred -cEEEEeccccchhhhhhHHHHHHHHHHHHHh----cCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcccccc
Q 001735 792 -NFISITGSTLTSKWFGDAEKLTKALFSFASK----LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSK 866 (1019)
Q Consensus 792 -~fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark----~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~ 866 (1019)
.++.+........ -....++.+...+.. ...-|++|||+|.|. ....+.|+..|+.-
T Consensus 68 ~d~~~~~~~~~~~~---i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~------------~~a~NaLLK~LEep--- 129 (162)
T PF13177_consen 68 PDFIIIKPDKKKKS---IKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT------------EEAQNALLKTLEEP--- 129 (162)
T ss_dssp TTEEEEETTTSSSS---BSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-------------HHHHHHHHHHHHST---
T ss_pred cceEEEecccccch---hhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh------------HHHHHHHHHHhcCC---
Confidence 2344433322000 012344444444332 345699999999984 23456777777653
Q ss_pred CCCcEEEEEecCCCCCCcHHHHhhCCCCcccCC
Q 001735 867 ESQKILILGATNRPFDLDDAVIRRLPRRIYVDL 899 (1019)
Q Consensus 867 ~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~l 899 (1019)
...+.+|.+|+.+..+-+.+++|+ ..+.++.
T Consensus 130 -p~~~~fiL~t~~~~~il~TI~SRc-~~i~~~~ 160 (162)
T PF13177_consen 130 -PENTYFILITNNPSKILPTIRSRC-QVIRFRP 160 (162)
T ss_dssp -TTTEEEEEEES-GGGS-HHHHTTS-EEEEE--
T ss_pred -CCCEEEEEEECChHHChHHHHhhc-eEEecCC
Confidence 457889999999999999999998 4555543
No 237
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.53 E-value=7.4e-07 Score=92.03 Aligned_cols=100 Identities=24% Similarity=0.402 Sum_probs=60.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhh-----hhH-------HHHHHHHHHHHHhcCCeEEEe
Q 001735 766 KGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWF-----GDA-------EKLTKALFSFASKLAPVIIFV 830 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~-----Ge~-------e~~I~~lF~~Ark~~PsIIfI 830 (1019)
.+|||+|++||||+++|++|.+.. +.||+.++|+.+..... |.. ......+|..| ...+|||
T Consensus 23 ~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A---~~GtL~L 99 (168)
T PF00158_consen 23 LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQA---NGGTLFL 99 (168)
T ss_dssp S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHT---TTSEEEE
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeec---cceEEee
Confidence 579999999999999999998866 57999999988743321 110 00011344444 3489999
Q ss_pred ccchhhhhccCCCchhHHHHHHHHHHHhhhccc--c-----ccCCCcEEEEEecCCC
Q 001735 831 DEVDSLLGARGGAFEHEATRRMRNEFMSAWDGL--R-----SKESQKILILGATNRP 880 (1019)
Q Consensus 831 DEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl--~-----~~~~~~VLVIaTTN~p 880 (1019)
|||+.|... . ...|+..++.- . ....-.+.||++|+.+
T Consensus 100 d~I~~L~~~--------~----Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 100 DEIEDLPPE--------L----QAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD 144 (168)
T ss_dssp ETGGGS-HH--------H----HHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-
T ss_pred cchhhhHHH--------H----HHHHHHHHhhchhccccccccccccceEEeecCcC
Confidence 999998422 2 23333333311 0 1112368899999863
No 238
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.53 E-value=2.1e-06 Score=97.18 Aligned_cols=170 Identities=19% Similarity=0.194 Sum_probs=106.7
Q ss_pred hHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---------------------E
Q 001735 735 LEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN---------------------F 793 (1019)
Q Consensus 735 le~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~---------------------f 793 (1019)
+..+.+.|...+.. -+-+..+||+||+|+||+++|.++|+.+-+. |
T Consensus 9 ~~~~~~~l~~~~~~-------------~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~ 75 (319)
T PRK08769 9 QQRAYDQTVAALDA-------------GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDL 75 (319)
T ss_pred HHHHHHHHHHHHHc-------------CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCE
Confidence 55666677665532 1345679999999999999999999877321 2
Q ss_pred EEEe-ccccchh-h-hhhHHHHHHHHHHHHHhcC----CeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcccccc
Q 001735 794 ISIT-GSTLTSK-W-FGDAEKLTKALFSFASKLA----PVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSK 866 (1019)
Q Consensus 794 i~Is-~seL~s~-~-~Ge~e~~I~~lF~~Ark~~----PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~ 866 (1019)
+.+. .++-.+. . ..-.-..|+.+...+...+ -.|++||++|.|. ....|.|+..|+.
T Consensus 76 ~~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~------------~~AaNaLLKtLEE---- 139 (319)
T PRK08769 76 QLVSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAIN------------RAACNALLKTLEE---- 139 (319)
T ss_pred EEEecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhC------------HHHHHHHHHHhhC----
Confidence 2221 0100000 0 0011334555555444332 3699999999983 2235677777655
Q ss_pred CCCcEEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCCCccCHHHHHHHhcCCCHHHH
Q 001735 867 ESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDL 939 (1019)
Q Consensus 867 ~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeG~SgaDL 939 (1019)
+...+++|.+|+.++.|.+.+++|+ ..+.|+.|+.++-...|... .+. ..+...++..+.|-.+..+
T Consensus 140 Pp~~~~fiL~~~~~~~lLpTIrSRC-q~i~~~~~~~~~~~~~L~~~----~~~-~~~a~~~~~l~~G~p~~A~ 206 (319)
T PRK08769 140 PSPGRYLWLISAQPARLPATIRSRC-QRLEFKLPPAHEALAWLLAQ----GVS-ERAAQEALDAARGHPGLAA 206 (319)
T ss_pred CCCCCeEEEEECChhhCchHHHhhh-eEeeCCCcCHHHHHHHHHHc----CCC-hHHHHHHHHHcCCCHHHHH
Confidence 2346778888899999999999999 67889999988877777531 222 2234456666766544433
No 239
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.53 E-value=4.2e-07 Score=105.62 Aligned_cols=203 Identities=19% Similarity=0.236 Sum_probs=118.8
Q ss_pred CCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 001735 725 IGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTL 801 (1019)
Q Consensus 725 ~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL 801 (1019)
....+..|+|....+.++.+.|... ......|||.|.+||||..+|++|-+.. +.||++++|+.+
T Consensus 218 ~~~~~~~iIG~S~am~~ll~~i~~V------------A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAl 285 (550)
T COG3604 218 VVLEVGGIIGRSPAMRQLLKEIEVV------------AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAAL 285 (550)
T ss_pred hhcccccceecCHHHHHHHHHHHHH------------hcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeecccc
Confidence 3567788999999999888887552 1233569999999999999999998877 679999999877
Q ss_pred chhhhh-hHHHHHHHHHHHHHhc--------CCeEEEeccchhhhhccCCCchhHHHHHHHHHHH-hhhcccccc--CCC
Q 001735 802 TSKWFG-DAEKLTKALFSFASKL--------APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFM-SAWDGLRSK--ESQ 869 (1019)
Q Consensus 802 ~s~~~G-e~e~~I~~lF~~Ark~--------~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL-~~Ldgl~~~--~~~ 869 (1019)
-..... +-=...+..|.-|... ....||+|||..|--. ...+++..|- ..+..+-.. -.-
T Consensus 286 PesLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~--------lQaKLLRvLQegEieRvG~~r~ikV 357 (550)
T COG3604 286 PESLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELPLA--------LQAKLLRVLQEGEIERVGGDRTIKV 357 (550)
T ss_pred chHHHHHHHhcccccccccchhccCcceeecCCCeEechhhccCCHH--------HHHHHHHHHhhcceeecCCCceeEE
Confidence 432211 0011223344444332 2479999999887322 2222222211 112222111 123
Q ss_pred cEEEEEecCCCCCCcHHHHh---------hCCCCcccCCCCHHHHHH----HHHHHHhc----cCC-CCccC---HHHHH
Q 001735 870 KILILGATNRPFDLDDAVIR---------RLPRRIYVDLPDAENRMK----ILRIFLAH----ESL-ESGFQ---FNELA 928 (1019)
Q Consensus 870 ~VLVIaTTN~p~~LD~aLlr---------RFd~~I~V~lPd~eeR~e----ILk~~L~~----~~l-~~dvd---l~~LA 928 (1019)
.|-||++||+ +|..++.. |. .++.+..|...+|.+ +..+++++ .+. ...+. ++.|.
T Consensus 358 DVRiIAATNR--DL~~~V~~G~FRaDLYyRL-sV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~ 434 (550)
T COG3604 358 DVRVIAATNR--DLEEMVRDGEFRADLYYRL-SVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLS 434 (550)
T ss_pred EEEEEeccch--hHHHHHHcCcchhhhhhcc-cccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHH
Confidence 5789999998 45555554 33 233444566555532 33344442 222 11122 33333
Q ss_pred HHhcCCCHHHHHHHHHHHHHHH
Q 001735 929 NATEGYSGSDLKNLCIAAAYRP 950 (1019)
Q Consensus 929 ~~TeG~SgaDL~~L~~~Aa~~A 950 (1019)
...---+.++|++++..|+..|
T Consensus 435 ~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 435 SYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred cCCCCCcHHHHHHHHHHHHHHh
Confidence 3222225699999999999866
No 240
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.53 E-value=6.1e-07 Score=102.33 Aligned_cols=132 Identities=19% Similarity=0.223 Sum_probs=90.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------------------EEEEeccccc---------------
Q 001735 763 RPCKGILLFGPPGTGKTLLAKALATEAGAN-------------------------FISITGSTLT--------------- 802 (1019)
Q Consensus 763 ~p~~gVLL~GPpGTGKT~LArAIA~elg~~-------------------------fi~Is~seL~--------------- 802 (1019)
+.++.+||+||+|+||+++|.++|..+.+. ++.+.+....
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 345789999999999999999999987432 2222211000
Q ss_pred ---hh----h-hhhHHHHHHHHHHHHH----hcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCc
Q 001735 803 ---SK----W-FGDAEKLTKALFSFAS----KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQK 870 (1019)
Q Consensus 803 ---s~----~-~Ge~e~~I~~lF~~Ar----k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~ 870 (1019)
++ . ..-.-..++.+...+. .....|++||++|.|. ....|.||..|+. +...
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~------------~~AaNaLLKtLEE----Pp~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN------------VAAANALLKTLEE----PPPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC------------HHHHHHHHHHhcC----CCcC
Confidence 00 0 0001233444444332 2234599999999983 2235677777764 3457
Q ss_pred EEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHH
Q 001735 871 ILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRI 911 (1019)
Q Consensus 871 VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~ 911 (1019)
+++|.+|++++.|.+.+++|+ ..+.|++|+.++..++|..
T Consensus 163 t~fiL~t~~~~~LLpTI~SRc-q~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILSRC-RQFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred cEEEEEECChhhCcHHHHhcC-EEEEecCCCHHHHHHHHHH
Confidence 889999999999999999999 7889999999998888865
No 241
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.49 E-value=5.4e-06 Score=93.86 Aligned_cols=144 Identities=15% Similarity=0.133 Sum_probs=97.7
Q ss_pred hHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-----------------------
Q 001735 735 LEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA----------------------- 791 (1019)
Q Consensus 735 le~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~----------------------- 791 (1019)
+....+.|...+.. -+.+..+||+||.|+||+.+|.++|..+-+
T Consensus 8 l~~~~~~l~~~~~~-------------~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HP 74 (319)
T PRK06090 8 LVPVWQNWKAGLDA-------------GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHP 74 (319)
T ss_pred HHHHHHHHHHHHHc-------------CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCC
Confidence 56667777666532 234578999999999999999999997622
Q ss_pred cEEEEeccccchhhhhhHHHHHHHHHHHHH----hcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccC
Q 001735 792 NFISITGSTLTSKWFGDAEKLTKALFSFAS----KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKE 867 (1019)
Q Consensus 792 ~fi~Is~seL~s~~~Ge~e~~I~~lF~~Ar----k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~ 867 (1019)
.|+.+.+.. .++.. ....++.+-..+. .....|++||++|.|. ....|.|+..++. +
T Consensus 75 D~~~i~p~~-~~~~I--~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~------------~~AaNaLLKtLEE----P 135 (319)
T PRK06090 75 DLHVIKPEK-EGKSI--TVEQIRQCNRLAQESSQLNGYRLFVIEPADAMN------------ESASNALLKTLEE----P 135 (319)
T ss_pred CEEEEecCc-CCCcC--CHHHHHHHHHHHhhCcccCCceEEEecchhhhC------------HHHHHHHHHHhcC----C
Confidence 133333211 00111 1223344333332 2334799999999983 2235677777765 3
Q ss_pred CCcEEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHH
Q 001735 868 SQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRI 911 (1019)
Q Consensus 868 ~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~ 911 (1019)
..++++|.+|+.++.|-+.+++|+ ..+.|+.|+.++..+.+..
T Consensus 136 p~~t~fiL~t~~~~~lLpTI~SRC-q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 136 APNCLFLLVTHNQKRLLPTIVSRC-QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred CCCeEEEEEECChhhChHHHHhcc-eeEeCCCCCHHHHHHHHHH
Confidence 456888889999999999999999 6889999999888877753
No 242
>PRK08181 transposase; Validated
Probab=98.45 E-value=3.4e-07 Score=101.27 Aligned_cols=70 Identities=24% Similarity=0.329 Sum_probs=50.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhhH-HHHHHHHHHHHHhcCCeEEEeccchhhh
Q 001735 766 KGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGDA-EKLTKALFSFASKLAPVIIFVDEVDSLL 837 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~Ge~-e~~I~~lF~~Ark~~PsIIfIDEID~L~ 837 (1019)
.+++|+||||||||+||.|+++++ |..+++++..+++....... .......+... ..+.+|+|||++.+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~ 180 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVT 180 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEecccccc
Confidence 579999999999999999999865 78888888888766542211 11122333322 356899999998763
No 243
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.42 E-value=3.6e-06 Score=105.74 Aligned_cols=98 Identities=12% Similarity=0.134 Sum_probs=64.3
Q ss_pred HHHHhhcCCeEEEEcCchhhhhcccCCccHHHHHHHHHHHHhcCCCCEEEEecccCCCCCccccccccccccccccccCC
Q 001735 478 CEVLHSTQPLIVYFPDSSLWLSRAVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPNFGRLAKL 557 (1019)
Q Consensus 478 ~e~~~~~~p~Iiff~eid~~~~~~~~~~~~~~~~s~~~~~l~~l~g~v~vI~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 557 (1019)
|..+...+| ||||||||++.++ .|...++.|...||......++ |. ....
T Consensus 408 l~~~~~~~~-villDEidk~~~~-----~~~~~~~aLl~~ld~~~~~~f~-------d~-----------------~~~~ 457 (775)
T TIGR00763 408 LKKAKTKNP-LFLLDEIDKIGSS-----FRGDPASALLEVLDPEQNNAFS-------DH-----------------YLDV 457 (775)
T ss_pred HHHhCcCCC-EEEEechhhcCCc-----cCCCHHHHHHHhcCHHhcCccc-------cc-----------------cCCc
Confidence 445555667 7899999998742 1223345566656532111111 10 0011
Q ss_pred CCch-hhhhcccccCCCcchHHHHhcccceEEEcCCChHHHHHHHHHHHH
Q 001735 558 PLPL-QRLTEGLKATKRSDDNEIYNLFTNVLSIHPPKEEDLLRTFNKQVE 606 (1019)
Q Consensus 558 ~~~~-~~LvIGmTNR~d~iDeaL~rrFe~~~eI~LPdee~Rl~Il~Iht~ 606 (1019)
|..+ +.++|++||+.+.|+++|++||+ .++|+.|+.+.+.+|++.|+.
T Consensus 458 ~~d~s~v~~I~TtN~~~~i~~~L~~R~~-vi~~~~~~~~e~~~I~~~~l~ 506 (775)
T TIGR00763 458 PFDLSKVIFIATANSIDTIPRPLLDRME-VIELSGYTEEEKLEIAKKYLI 506 (775)
T ss_pred eeccCCEEEEEecCCchhCCHHHhCCee-EEecCCCCHHHHHHHHHHHHH
Confidence 1122 24677889999999999999996 689999999999999999974
No 244
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.39 E-value=1.5e-06 Score=101.79 Aligned_cols=166 Identities=21% Similarity=0.299 Sum_probs=97.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhhHHHHHHHHHHH---------------HHhcCCeE
Q 001735 766 KGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGDAEKLTKALFSF---------------ASKLAPVI 827 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~Ge~e~~I~~lF~~---------------Ark~~PsI 827 (1019)
.+++|+|++||||+++|+++.... +.+|+.++|..+...... ..+|.. .......+
T Consensus 163 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~------~~lfg~~~~~~~~~~~~~~g~~~~a~~gt 236 (445)
T TIGR02915 163 ITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLE------SELFGYEKGAFTGAVKQTLGKIEYAHGGT 236 (445)
T ss_pred CCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHH------HHhcCCCCCCcCCCccCCCCceeECCCCE
Confidence 569999999999999999998776 578999999887432211 122221 01123579
Q ss_pred EEeccchhhhhccCCCchhHHHHHHHHHHHhhhcccc-------ccCCCcEEEEEecCCC-------CCCcHHHHhhCCC
Q 001735 828 IFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR-------SKESQKILILGATNRP-------FDLDDAVIRRLPR 893 (1019)
Q Consensus 828 IfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~-------~~~~~~VLVIaTTN~p-------~~LD~aLlrRFd~ 893 (1019)
||||||+.|... . ...|+..+..-. ......+.+|+||+.. ..+.+.+..|+ .
T Consensus 237 l~l~~i~~l~~~--------~----q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l-~ 303 (445)
T TIGR02915 237 LFLDEIGDLPLN--------L----QAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFYRI-A 303 (445)
T ss_pred EEEechhhCCHH--------H----HHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHHHh-c
Confidence 999999998422 2 223333332110 0111256788888764 34566676777 3
Q ss_pred CcccCCCCHHHHHH----HHHHHHhcc----CCC-CccCHHH---HHHHhcCCCHHHHHHHHHHHHHHH
Q 001735 894 RIYVDLPDAENRMK----ILRIFLAHE----SLE-SGFQFNE---LANATEGYSGSDLKNLCIAAAYRP 950 (1019)
Q Consensus 894 ~I~V~lPd~eeR~e----ILk~~L~~~----~l~-~dvdl~~---LA~~TeG~SgaDL~~L~~~Aa~~A 950 (1019)
.+.+.+|...+|.+ ++.+++... ... ..+.-+. |....=--+.++|++++..|+..+
T Consensus 304 ~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~ 372 (445)
T TIGR02915 304 EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMA 372 (445)
T ss_pred cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 45666677666654 444454432 111 1233233 332221224589999998887643
No 245
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.35 E-value=1e-05 Score=88.48 Aligned_cols=175 Identities=21% Similarity=0.306 Sum_probs=115.1
Q ss_pred ccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-C--CcEEEEec------
Q 001735 728 RFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA-G--ANFISITG------ 798 (1019)
Q Consensus 728 tfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~el-g--~~fi~Is~------ 798 (1019)
+|+.+.+.++....|..+... ....++|+|||+|+||-+.+.++.+++ | +.=..+..
T Consensus 11 sl~~l~~~~e~~~~Lksl~~~--------------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tp 76 (351)
T KOG2035|consen 11 SLDELIYHEELANLLKSLSST--------------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTP 76 (351)
T ss_pred hhhhcccHHHHHHHHHHhccc--------------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecC
Confidence 456677777777777765421 123679999999999999999999987 3 21111110
Q ss_pred -------cccchhh--------hhh-HHHHHHHHHHHHHhcCC---------eEEEeccchhhhhccCCCchhHHHHHHH
Q 001735 799 -------STLTSKW--------FGD-AEKLTKALFSFASKLAP---------VIIFVDEVDSLLGARGGAFEHEATRRMR 853 (1019)
Q Consensus 799 -------seL~s~~--------~Ge-~e~~I~~lF~~Ark~~P---------sIIfIDEID~L~~~r~~~~~~e~~~ril 853 (1019)
+.+.+.| .|. ....+..+..+..+.+| .|++|-|+|.|..+- ..+.++++
T Consensus 77 S~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dA-----Q~aLRRTM 151 (351)
T KOG2035|consen 77 SKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDA-----QHALRRTM 151 (351)
T ss_pred CCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHH-----HHHHHHHH
Confidence 0011111 122 23345555555444333 599999999995432 23344444
Q ss_pred HHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCCCcc-CHHHHHHHhc
Q 001735 854 NEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLESGF-QFNELANATE 932 (1019)
Q Consensus 854 ~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dv-dl~~LA~~Te 932 (1019)
.... ..+-+|..+|....+-+++++|+ ..+.+|.|+.++...++...+.++++.-+. -+..||+.++
T Consensus 152 EkYs-----------~~~RlIl~cns~SriIepIrSRC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~ 219 (351)
T KOG2035|consen 152 EKYS-----------SNCRLILVCNSTSRIIEPIRSRC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSN 219 (351)
T ss_pred HHHh-----------cCceEEEEecCcccchhHHhhhe-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhc
Confidence 3332 24667788899999999999998 678999999999999999999988876432 2455666665
Q ss_pred C
Q 001735 933 G 933 (1019)
Q Consensus 933 G 933 (1019)
|
T Consensus 220 ~ 220 (351)
T KOG2035|consen 220 R 220 (351)
T ss_pred c
Confidence 4
No 246
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.34 E-value=9.5e-06 Score=88.98 Aligned_cols=53 Identities=36% Similarity=0.494 Sum_probs=38.3
Q ss_pred cccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 001735 729 FDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAG 790 (1019)
Q Consensus 729 fdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg 790 (1019)
-+.++|+....++.--.+.+.-. . + -..+.+||.||||||||.||-+|++++|
T Consensus 37 ~~g~vGQ~~AReAagiivdlik~--K---k----maGravLlaGppgtGKTAlAlaisqELG 89 (456)
T KOG1942|consen 37 AAGFVGQENAREAAGIIVDLIKS--K---K----MAGRAVLLAGPPGTGKTALALAISQELG 89 (456)
T ss_pred ccccccchhhhhhhhHHHHHHHh--h---h----ccCcEEEEecCCCCchhHHHHHHHHHhC
Confidence 34578888888765544443211 1 1 1247899999999999999999999995
No 247
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.33 E-value=5.9e-06 Score=90.72 Aligned_cols=96 Identities=13% Similarity=0.086 Sum_probs=66.3
Q ss_pred HHHHHHHhhcCCeEEEEcCchhhhhcccCCccHHHHHHHHHHHHhcCCCCEEEEecccCCCCCccccccccccccccccc
Q 001735 475 EALCEVLHSTQPLIVYFPDSSLWLSRAVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPNFGRL 554 (1019)
Q Consensus 475 ~~L~e~~~~~~p~Iiff~eid~~~~~~~~~~~~~~~~s~~~~~l~~l~g~v~vI~~~~~~d~~~~~~~~~~~~~~~~~~~ 554 (1019)
..+|+.+ .+.||||||++.|.+.. ......+.+.+|...|+...+.++||++.+..+ .++
T Consensus 98 ~~~~~~a---~~~VL~IDE~~~L~~~~-~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~-~~~--------------- 157 (261)
T TIGR02881 98 REVIKKA---LGGVLFIDEAYSLARGG-EKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDE-MDY--------------- 157 (261)
T ss_pred HHHHHhc---cCCEEEEechhhhccCC-ccchHHHHHHHHHHHHhccCCCEEEEecCCcch-hHH---------------
Confidence 4455544 46799999999986421 111123455667777888788888875544322 111
Q ss_pred cCCCCchhhhhcccccCCCcchHHHHhcccceEEEcCCChHHHHHHHHHHHHH
Q 001735 555 AKLPLPLQRLTEGLKATKRSDDNEIYNLFTNVLSIHPPKEEDLLRTFNKQVEE 607 (1019)
Q Consensus 555 ~~~~~~~~~LvIGmTNR~d~iDeaL~rrFe~~~eI~LPdee~Rl~Il~Iht~k 607 (1019)
...++++|.+||+.+++|+.++.+.+.+|++..+..
T Consensus 158 -----------------~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 158 -----------------FLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred -----------------HHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH
Confidence 134789999999999999999999999999977543
No 248
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.33 E-value=5.9e-06 Score=91.87 Aligned_cols=160 Identities=19% Similarity=0.205 Sum_probs=105.0
Q ss_pred CcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--E----EEEecc
Q 001735 726 GVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN--F----ISITGS 799 (1019)
Q Consensus 726 ~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~--f----i~Is~s 799 (1019)
...++|+++.+++...+.++... ...+++|+|||||||||....|.|..+-.+ + ..++++
T Consensus 37 P~~l~dv~~~~ei~st~~~~~~~--------------~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaS 102 (360)
T KOG0990|consen 37 PPFLGIVIKQEPIWSTENRYSGM--------------PGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNAS 102 (360)
T ss_pred CchhhhHhcCCchhhHHHHhccC--------------CCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhcc
Confidence 35678889999999988887422 112389999999999999999999998553 1 112222
Q ss_pred ccchhhhhhHHHHHHHHHHHHHh-------cCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEE
Q 001735 800 TLTSKWFGDAEKLTKALFSFASK-------LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKIL 872 (1019)
Q Consensus 800 eL~s~~~Ge~e~~I~~lF~~Ark-------~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VL 872 (1019)
+-.+ . ...+.-...|..++. ..+..|++||.|.+...- ..+.++++..+ ..++.
T Consensus 103 d~rg--i-d~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~A-----QnALRRviek~-----------t~n~r 163 (360)
T KOG0990|consen 103 DDRG--I-DPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDA-----QNALRRVIEKY-----------TANTR 163 (360)
T ss_pred CccC--C-cchHHHHHHHHhhccceeccccCceeEEEecchhHhhHHH-----HHHHHHHHHHh-----------ccceE
Confidence 2111 1 122333445555543 267899999999985332 12223322222 23556
Q ss_pred EEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCC
Q 001735 873 ILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE 919 (1019)
Q Consensus 873 VIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~ 919 (1019)
++..+|.+..+.+++++||. .+.+.+.+...-...+.+++..+...
T Consensus 164 F~ii~n~~~ki~pa~qsRct-rfrf~pl~~~~~~~r~shi~e~e~~~ 209 (360)
T KOG0990|consen 164 FATISNPPQKIHPAQQSRCT-RFRFAPLTMAQQTERQSHIRESEQKE 209 (360)
T ss_pred EEEeccChhhcCchhhcccc-cCCCCCCChhhhhhHHHHHHhcchhh
Confidence 66778999999999999994 55666667777777788887766554
No 249
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.32 E-value=4.7e-06 Score=94.69 Aligned_cols=132 Identities=17% Similarity=0.194 Sum_probs=87.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCC-------------------------cEEEEecccc---chhh-hhhHHHHH
Q 001735 763 RPCKGILLFGPPGTGKTLLAKALATEAGA-------------------------NFISITGSTL---TSKW-FGDAEKLT 813 (1019)
Q Consensus 763 ~p~~gVLL~GPpGTGKT~LArAIA~elg~-------------------------~fi~Is~seL---~s~~-~Ge~e~~I 813 (1019)
+.+..+||+||+|+|||++|+++|..+.+ .|+.+.+..- .++. ..-.-..+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 34578999999999999999999998632 2344443210 0000 00023445
Q ss_pred HHHHHHHHh----cCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHh
Q 001735 814 KALFSFASK----LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIR 889 (1019)
Q Consensus 814 ~~lF~~Ark----~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlr 889 (1019)
+.+...+.. ....|++||+++.+.. ...+.|+..++... ..+.+|.+|+.+..+.+.+.+
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld~------------~a~naLLk~LEep~----~~~~~Ilvth~~~~ll~ti~S 162 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMNL------------QAANSLLKVLEEPP----PQVVFLLVSHAADKVLPTIKS 162 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCCH------------HHHHHHHHHHHhCc----CCCEEEEEeCChHhChHHHHH
Confidence 555555543 2346999999999832 23455666665542 235566688888899999999
Q ss_pred hCCCCcccCCCCHHHHHHHHHH
Q 001735 890 RLPRRIYVDLPDAENRMKILRI 911 (1019)
Q Consensus 890 RFd~~I~V~lPd~eeR~eILk~ 911 (1019)
|+ ..+.|++|+.++..+.|..
T Consensus 163 Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 163 RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred Hh-hhhcCCCCCHHHHHHHHHh
Confidence 99 7888999999888777753
No 250
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.31 E-value=1.4e-06 Score=99.09 Aligned_cols=69 Identities=23% Similarity=0.417 Sum_probs=48.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhhH---HHHHHHHHHHHHhcCCeEEEeccchhh
Q 001735 766 KGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGDA---EKLTKALFSFASKLAPVIIFVDEVDSL 836 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~Ge~---e~~I~~lF~~Ark~~PsIIfIDEID~L 836 (1019)
.+++|+||+|||||+||.|||+++ |..++.++..+++....... .......+.. -....+|+|||+...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~--l~~~DLLIIDDlG~e 258 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDL--LINCDLLIIDDLGTE 258 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHH--hccCCEEEEeccCCC
Confidence 679999999999999999999987 78899999888765432210 0011111222 224589999999775
No 251
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.31 E-value=3.1e-06 Score=88.80 Aligned_cols=179 Identities=24% Similarity=0.258 Sum_probs=92.2
Q ss_pred cChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---cEEEEeccccch-----h
Q 001735 733 GALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA---NFISITGSTLTS-----K 804 (1019)
Q Consensus 733 gGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~---~fi~Is~seL~s-----~ 804 (1019)
.|.++..+.|.+++.. .+...++|+||.|+|||+|++.+.+...- ..+.+....... .
T Consensus 2 ~gR~~el~~l~~~l~~--------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 67 (234)
T PF01637_consen 2 FGREKELEKLKELLES--------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRS 67 (234)
T ss_dssp -S-HHHHHHHHHCHHH----------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHH
Confidence 3556666666665422 12367999999999999999999998832 122221111000 0
Q ss_pred ------------------------------hhhhHHHHHHHHHHHHHhc-CCeEEEeccchhhh-hccCCCchhHHHHHH
Q 001735 805 ------------------------------WFGDAEKLTKALFSFASKL-APVIIFVDEVDSLL-GARGGAFEHEATRRM 852 (1019)
Q Consensus 805 ------------------------------~~Ge~e~~I~~lF~~Ark~-~PsIIfIDEID~L~-~~r~~~~~~e~~~ri 852 (1019)
........+..++....+. ...||+|||++.+. .... ...+
T Consensus 68 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~-------~~~~ 140 (234)
T PF01637_consen 68 FIEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEE-------DKDF 140 (234)
T ss_dssp HHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTT-------THHH
T ss_pred HHHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccc-------hHHH
Confidence 0012234455555555443 34899999999997 2211 1234
Q ss_pred HHHHHhhhccccccCCCcEEEEEecCCCC------CCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccC-C-CCccCH
Q 001735 853 RNEFMSAWDGLRSKESQKILILGATNRPF------DLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHES-L-ESGFQF 924 (1019)
Q Consensus 853 l~~LL~~Ldgl~~~~~~~VLVIaTTN~p~------~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~-l-~~dvdl 924 (1019)
...|...++..... .++.+|.+++... .-...+..|+.. +.+++.+.++..+++...+.... + .++.++
T Consensus 141 ~~~l~~~~~~~~~~--~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~ 217 (234)
T PF01637_consen 141 LKSLRSLLDSLLSQ--QNVSIVITGSSDSLMEEFLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDI 217 (234)
T ss_dssp HHHHHHHHHH------TTEEEEEEESSHHHHHHTT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC------HHHH
T ss_pred HHHHHHHHhhcccc--CCceEEEECCchHHHHHhhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHH
Confidence 44555555543222 2343333333211 112234456755 88999999999999998776541 1 255667
Q ss_pred HHHHHHhcCCC
Q 001735 925 NELANATEGYS 935 (1019)
Q Consensus 925 ~~LA~~TeG~S 935 (1019)
+.+...+.|..
T Consensus 218 ~~i~~~~gG~P 228 (234)
T PF01637_consen 218 EEIYSLTGGNP 228 (234)
T ss_dssp HHHHHHHTT-H
T ss_pred HHHHHHhCCCH
Confidence 88888888844
No 252
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.30 E-value=3e-06 Score=95.43 Aligned_cols=70 Identities=20% Similarity=0.310 Sum_probs=49.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhhHH-HHHHHHHHHHHhcCCeEEEeccchhh
Q 001735 765 CKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGDAE-KLTKALFSFASKLAPVIIFVDEVDSL 836 (1019)
Q Consensus 765 ~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~Ge~e-~~I~~lF~~Ark~~PsIIfIDEID~L 836 (1019)
.++++|+||+|||||+||.|+|+++ |.++..+..++++........ ..+...+... ....||+|||+..-
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l--~~~dlLiIDDiG~e 229 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAV--KEAPVLMLDDIGAE 229 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHh--cCCCEEEEecCCCc
Confidence 4789999999999999999999998 788888888877654322111 1122223222 24689999999763
No 253
>PRK06526 transposase; Provisional
Probab=98.30 E-value=8.9e-07 Score=97.22 Aligned_cols=73 Identities=26% Similarity=0.341 Sum_probs=49.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhhH-HHHHHHHHHHHHhcCCeEEEeccchhh
Q 001735 762 LRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGDA-EKLTKALFSFASKLAPVIIFVDEVDSL 836 (1019)
Q Consensus 762 ~~p~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~Ge~-e~~I~~lF~~Ark~~PsIIfIDEID~L 836 (1019)
+....+++|+||||||||+||.+|+.++ |..+..+++.+++....... ...+...+.. -..+.+|+|||++.+
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~--l~~~dlLIIDD~g~~ 171 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVK--LGRYPLLIVDEVGYI 171 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHH--hccCCEEEEcccccC
Confidence 3445689999999999999999999876 77777777766654432111 1111122221 234689999999876
No 254
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.29 E-value=3.6e-07 Score=95.10 Aligned_cols=71 Identities=31% Similarity=0.455 Sum_probs=47.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhhH-HHHHHHHHHHHHhcCCeEEEeccchh
Q 001735 763 RPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGDA-EKLTKALFSFASKLAPVIIFVDEVDS 835 (1019)
Q Consensus 763 ~p~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~Ge~-e~~I~~lF~~Ark~~PsIIfIDEID~ 835 (1019)
....+++|+||+|||||+||.|+++++ |.++..++.++++....... .......+... ....+|+|||+..
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l--~~~dlLilDDlG~ 119 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRL--KRVDLLILDDLGY 119 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHH--HTSSCEEEETCTS
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcc--ccccEecccccce
Confidence 345789999999999999999999877 88999999988866532211 01112222222 2458999999965
No 255
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.29 E-value=3.6e-06 Score=92.46 Aligned_cols=71 Identities=30% Similarity=0.447 Sum_probs=50.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhhHHH--HHHHHHHHHHhcCCeEEEeccchhh
Q 001735 764 PCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGDAEK--LTKALFSFASKLAPVIIFVDEVDSL 836 (1019)
Q Consensus 764 p~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~Ge~e~--~I~~lF~~Ark~~PsIIfIDEID~L 836 (1019)
.+.+++|+||||+|||+||.||++++ |..++.++.++++......... .-..+.... ....+|+|||+...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l--~~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL--KKVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh--hcCCEEEEecccCc
Confidence 34789999999999999999999987 8899999999987654332111 111111111 23589999999775
No 256
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.29 E-value=5.7e-06 Score=97.77 Aligned_cols=190 Identities=21% Similarity=0.266 Sum_probs=108.1
Q ss_pred cccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhh
Q 001735 729 FDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKW 805 (1019)
Q Consensus 729 fdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~s~~ 805 (1019)
+.++.|.......+.+.+... ......|||.|++|||||++|+++.... +.+|+.++|..+....
T Consensus 137 ~~~lig~s~~~~~l~~~~~~~------------~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~ 204 (469)
T PRK10923 137 TTDIIGEAPAMQDVFRIIGRL------------SRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL 204 (469)
T ss_pred cccceecCHHHHHHHHHHHHH------------hccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHH
Confidence 445666666665555544321 1223569999999999999999998876 5799999998874322
Q ss_pred hhhHHHHHHHHHHHH---------------HhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcccc------
Q 001735 806 FGDAEKLTKALFSFA---------------SKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR------ 864 (1019)
Q Consensus 806 ~Ge~e~~I~~lF~~A---------------rk~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~------ 864 (1019)
. ...+|... .......||||||+.|... . ...|+..++.-.
T Consensus 205 ~------~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~--------~----q~~L~~~l~~~~~~~~~~ 266 (469)
T PRK10923 205 I------ESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLD--------V----QTRLLRVLADGQFYRVGG 266 (469)
T ss_pred H------HHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCHH--------H----HHHHHHHHhcCcEEeCCC
Confidence 1 11222211 1123578999999998422 1 223333333211
Q ss_pred -ccCCCcEEEEEecCCC-------CCCcHHHHhhCCCCcccCCCCHHHH----HHHHHHHHhccC----CC-CccC---H
Q 001735 865 -SKESQKILILGATNRP-------FDLDDAVIRRLPRRIYVDLPDAENR----MKILRIFLAHES----LE-SGFQ---F 924 (1019)
Q Consensus 865 -~~~~~~VLVIaTTN~p-------~~LD~aLlrRFd~~I~V~lPd~eeR----~eILk~~L~~~~----l~-~dvd---l 924 (1019)
......+.||+||+.. ..+.+.+..||. .+.+..|...+| ..++.+++.... .. ..+. +
T Consensus 267 ~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~-~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~ 345 (469)
T PRK10923 267 YAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLN-VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETE 345 (469)
T ss_pred CCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHHHhc-ceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHH
Confidence 0011246788888653 246677778883 345555554444 445666654321 11 1122 2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHH
Q 001735 925 NELANATEGYSGSDLKNLCIAAAYR 949 (1019)
Q Consensus 925 ~~LA~~TeG~SgaDL~~L~~~Aa~~ 949 (1019)
..|....=--+.++|++++..|+..
T Consensus 346 ~~L~~~~wpgNv~eL~~~i~~~~~~ 370 (469)
T PRK10923 346 AALTRLAWPGNVRQLENTCRWLTVM 370 (469)
T ss_pred HHHHhCCCCChHHHHHHHHHHHHHh
Confidence 3333222222458999999888764
No 257
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=3.4e-07 Score=106.38 Aligned_cols=48 Identities=42% Similarity=0.659 Sum_probs=39.8
Q ss_pred CcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 001735 726 GVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA 789 (1019)
Q Consensus 726 ~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~el 789 (1019)
...|.||.|++..|..|.... .++ +++|++|||||||||||+.+..-+
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAA-----------AGg-----HnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAA-----------AGG-----HNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHH-----------hcC-----CcEEEecCCCCchHHhhhhhcccC
Confidence 357999999999999997754 233 789999999999999999886543
No 258
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.27 E-value=9.5e-06 Score=96.85 Aligned_cols=145 Identities=21% Similarity=0.303 Sum_probs=85.0
Q ss_pred ccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC----CcEEEEec-----
Q 001735 728 RFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAG----ANFISITG----- 798 (1019)
Q Consensus 728 tfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg----~~fi~Is~----- 798 (1019)
.|.++.|...++..+.-. .....+++|.||||+|||+|++.++..+. -..+.+..
T Consensus 189 d~~~v~Gq~~~~~al~la----------------a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~ 252 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEIT----------------AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLV 252 (506)
T ss_pred CeEEEECcHHHHhhhhee----------------ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhh
Confidence 677888887766654221 12346799999999999999999987652 11111110
Q ss_pred -c-----ccc-----hh--------hhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhh
Q 001735 799 -S-----TLT-----SK--------WFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSA 859 (1019)
Q Consensus 799 -s-----eL~-----s~--------~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~ 859 (1019)
. .+. .. .+|.....-...+..|. ..+|||||++.+- ..++..|+..
T Consensus 253 g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~---gGvLfLDEi~e~~------------~~~~~~L~~~ 317 (506)
T PRK09862 253 NAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAH---NGVLFLDELPEFE------------RRTLDALREP 317 (506)
T ss_pred ccccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhcc---CCEEecCCchhCC------------HHHHHHHHHH
Confidence 0 000 00 01111001112334333 3799999998762 2334444444
Q ss_pred hcccc---------ccCCCcEEEEEecCCCC---------------------CCcHHHHhhCCCCcccCCCCHH
Q 001735 860 WDGLR---------SKESQKILILGATNRPF---------------------DLDDAVIRRLPRRIYVDLPDAE 903 (1019)
Q Consensus 860 Ldgl~---------~~~~~~VLVIaTTN~p~---------------------~LD~aLlrRFd~~I~V~lPd~e 903 (1019)
|+.-. .....++.+|+|+|... .+..++++||+..+.++.|+.+
T Consensus 318 LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 318 IESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred HHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 42111 11234689999998752 4777999999999999988644
No 259
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.24 E-value=1e-05 Score=95.16 Aligned_cols=165 Identities=21% Similarity=0.287 Sum_probs=96.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhhHHHHHHHHHHH---------------HHhcCCeE
Q 001735 766 KGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGDAEKLTKALFSF---------------ASKLAPVI 827 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~Ge~e~~I~~lF~~---------------Ark~~PsI 827 (1019)
..+||+|++||||+++|+++.... +.+|+.++|..+..... -..+|.. .......+
T Consensus 167 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~gt 240 (457)
T PRK11361 167 ASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLL------ESELFGHEKGAFTGAQTLRQGLFERANEGT 240 (457)
T ss_pred cEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHH------HHHhcCCCCCCCCCCCCCCCCceEECCCCE
Confidence 569999999999999999998765 57999999988743221 1112221 11123479
Q ss_pred EEeccchhhhhccCCCchhHHHHHHHHHHHhhhcccc-------ccCCCcEEEEEecCCC-------CCCcHHHHhhCCC
Q 001735 828 IFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR-------SKESQKILILGATNRP-------FDLDDAVIRRLPR 893 (1019)
Q Consensus 828 IfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~-------~~~~~~VLVIaTTN~p-------~~LD~aLlrRFd~ 893 (1019)
||||||+.|... . ...|+..++... ......+.||+||+.. ..+.+.+..|+.
T Consensus 241 l~ld~i~~l~~~--------~----q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l~- 307 (457)
T PRK11361 241 LLLDEIGEMPLV--------L----QAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLN- 307 (457)
T ss_pred EEEechhhCCHH--------H----HHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhc-
Confidence 999999998422 2 223333332211 0111247788888754 235556666663
Q ss_pred CcccCCCCHHHHHH----HHHHHHhccCC----C-CccCHHHHHHHh-cCC--CHHHHHHHHHHHHHH
Q 001735 894 RIYVDLPDAENRMK----ILRIFLAHESL----E-SGFQFNELANAT-EGY--SGSDLKNLCIAAAYR 949 (1019)
Q Consensus 894 ~I~V~lPd~eeR~e----ILk~~L~~~~l----~-~dvdl~~LA~~T-eG~--SgaDL~~L~~~Aa~~ 949 (1019)
.+.+..|...+|.+ ++..++..... . ..++-+.+.... ..| +.++|++++..|+..
T Consensus 308 ~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~ 375 (457)
T PRK11361 308 VIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVM 375 (457)
T ss_pred cceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHh
Confidence 46666777666644 44444443211 1 123333332222 222 568999999887753
No 260
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.23 E-value=2e-05 Score=94.58 Aligned_cols=200 Identities=17% Similarity=0.205 Sum_probs=110.6
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc----
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT---- 802 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~---- 802 (1019)
.+.+||.--.+..+.++.++...+. + ..+.+-+||+||||||||++++.+|+++|+.++....+...
T Consensus 16 ~~~~eLavhkkKv~eV~~wl~~~~~--------~-~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~ 86 (519)
T PF03215_consen 16 KTLDELAVHKKKVEEVRSWLEEMFS--------G-SSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESD 86 (519)
T ss_pred CCHHHhhccHHHHHHHHHHHHHHhc--------c-CCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccc
Confidence 4566777777777777777754221 1 12345688999999999999999999999988875433221
Q ss_pred ---hhhhhhH---H--HHHHHHHHH-----HHh-----------cCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHh
Q 001735 803 ---SKWFGDA---E--KLTKALFSF-----ASK-----------LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 858 (1019)
Q Consensus 803 ---s~~~Ge~---e--~~I~~lF~~-----Ark-----------~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~ 858 (1019)
..+.+.. . ..-...|.. ++. ..+.||+|+|+-.+... ...++...|..
T Consensus 87 ~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~--------~~~~f~~~L~~ 158 (519)
T PF03215_consen 87 NQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHR--------DTSRFREALRQ 158 (519)
T ss_pred cccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccch--------hHHHHHHHHHH
Confidence 1111110 0 000112221 111 24679999999765322 11233333333
Q ss_pred hhccccccCCC-cEEEEEe-c------CCCC--------CCcHHHHhhC-CCCcccCCCCHHHHHHHHHHHHhcc-----
Q 001735 859 AWDGLRSKESQ-KILILGA-T------NRPF--------DLDDAVIRRL-PRRIYVDLPDAENRMKILRIFLAHE----- 916 (1019)
Q Consensus 859 ~Ldgl~~~~~~-~VLVIaT-T------N~p~--------~LD~aLlrRF-d~~I~V~lPd~eeR~eILk~~L~~~----- 916 (1019)
.+.. ... ++++|.| + |... .+++.++... -..|.|.+-...-..+.|+.++..+
T Consensus 159 ~l~~----~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~~ 234 (519)
T PF03215_consen 159 YLRS----SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSSS 234 (519)
T ss_pred HHHc----CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhhc
Confidence 3322 122 6777777 1 1111 3556666632 2456777666666667777666654
Q ss_pred C---CCCccC-HHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 001735 917 S---LESGFQ-FNELANATEGYSGSDLKNLCIAAAYRPV 951 (1019)
Q Consensus 917 ~---l~~dvd-l~~LA~~TeG~SgaDL~~L~~~Aa~~Ai 951 (1019)
. ...... ++.|+..+ .+||+.++..-.+.+.
T Consensus 235 ~~~~~p~~~~~l~~I~~~s----~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 235 GKNKVPDKQSVLDSIAESS----NGDIRSAINNLQFWCL 269 (519)
T ss_pred CCccCCChHHHHHHHHHhc----CchHHHHHHHHHHHhc
Confidence 1 111122 55666544 4688888766555554
No 261
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.22 E-value=6.2e-06 Score=91.97 Aligned_cols=99 Identities=9% Similarity=0.116 Sum_probs=69.3
Q ss_pred HHHHHHHHhhcCCeEEEEcCchhhhhcccCCccHHHHHHHHHHHHhcCCCCEEEEecccCCCCCcccccccccccccccc
Q 001735 474 MEALCEVLHSTQPLIVYFPDSSLWLSRAVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPNFGR 553 (1019)
Q Consensus 474 i~~L~e~~~~~~p~Iiff~eid~~~~~~~~~~~~~~~~s~~~~~l~~l~g~v~vI~~~~~~d~~~~~~~~~~~~~~~~~~ 553 (1019)
+..+|+.+ .+-||||||++.+....-......++.+.|...|+.-.+.++||++++... .++
T Consensus 113 ~~~~~~~a---~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~---~~~------------ 174 (284)
T TIGR02880 113 TKEILKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDR---MDS------------ 174 (284)
T ss_pred HHHHHHHc---cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHH---HHH------------
Confidence 34566655 458999999998753211111234566778888887778888887665321 000
Q ss_pred ccCCCCchhhhhcccccCCCcchHHHHhcccceEEEcCCChHHHHHHHHHHHHHH
Q 001735 554 LAKLPLPLQRLTEGLKATKRSDDNEIYNLFTNVLSIHPPKEEDLLRTFNKQVEED 608 (1019)
Q Consensus 554 ~~~~~~~~~~LvIGmTNR~d~iDeaL~rrFe~~~eI~LPdee~Rl~Il~Iht~k~ 608 (1019)
+ -.++++|++||+.+++|++++.+.+.+|++.++.+.
T Consensus 175 -------~-----------~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~ 211 (284)
T TIGR02880 175 -------F-----------FESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQ 211 (284)
T ss_pred -------H-----------HhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHh
Confidence 0 124799999999999999999999999999887653
No 262
>PF13173 AAA_14: AAA domain
Probab=98.21 E-value=2.8e-06 Score=83.19 Aligned_cols=69 Identities=33% Similarity=0.406 Sum_probs=48.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEeccchhh
Q 001735 766 KGILLFGPPGTGKTLLAKALATEAG--ANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSL 836 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~elg--~~fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L 836 (1019)
+.++|+||+|+|||++++.++..+. -+++.+++.+.......... +...+.......+.+||||||+.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 4589999999999999999999886 77888887765432211111 223333222226789999999987
No 263
>PRK09183 transposase/IS protein; Provisional
Probab=98.20 E-value=3.5e-06 Score=92.78 Aligned_cols=72 Identities=32% Similarity=0.418 Sum_probs=50.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhh-HHHHHHHHHHHHHhcCCeEEEeccchhh
Q 001735 764 PCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGD-AEKLTKALFSFASKLAPVIIFVDEVDSL 836 (1019)
Q Consensus 764 p~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~Ge-~e~~I~~lF~~Ark~~PsIIfIDEID~L 836 (1019)
...+++|+||||||||+||.+++..+ |..+..+++.++....... ....+..+|... ...+.+++|||++.+
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYL 176 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccC
Confidence 34679999999999999999998764 7788888877765443221 111233444432 245789999999875
No 264
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.19 E-value=1.8e-06 Score=85.73 Aligned_cols=105 Identities=25% Similarity=0.445 Sum_probs=63.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCC
Q 001735 766 KGILLFGPPGTGKTLLAKALATEAG---ANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGG 842 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~elg---~~fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~ 842 (1019)
.+|||+|++||||+++|++|....+ .+|+.++|..+. ..++..+ ...+|||+|||.|...
T Consensus 22 ~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L~~~--- 84 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRLSPE--- 84 (138)
T ss_dssp S-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS-HH---
T ss_pred CcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHCCHH---
Confidence 5699999999999999999998774 366666666543 2344443 6789999999998422
Q ss_pred CchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCC-CC------CCcHHHHhhCCCCcccCCC
Q 001735 843 AFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNR-PF------DLDDAVIRRLPRRIYVDLP 900 (1019)
Q Consensus 843 ~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~-p~------~LD~aLlrRFd~~I~V~lP 900 (1019)
. ...|+..+.... ..++.+|+++.. +. .+++.+..+|. .+.+..|
T Consensus 85 -----~----Q~~L~~~l~~~~---~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~-~~~i~lP 136 (138)
T PF14532_consen 85 -----A----QRRLLDLLKRQE---RSNVRLIASSSQDLEELVEEGRFSPDLYYRLS-QLEIHLP 136 (138)
T ss_dssp -----H----HHHHHHHHHHCT---TTTSEEEEEECC-CCCHHHHSTHHHHHHHHCS-TCEEEE-
T ss_pred -----H----HHHHHHHHHhcC---CCCeEEEEEeCCCHHHHhhccchhHHHHHHhC-CCEEeCC
Confidence 2 223333333321 234456666543 22 25667777774 3344334
No 265
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.17 E-value=6.8e-05 Score=82.73 Aligned_cols=95 Identities=19% Similarity=0.121 Sum_probs=66.0
Q ss_pred CCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCCCccC-HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 001735 879 RPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLESGFQ-FNELANATEGYSGSDLKNLCIAAAYRPVQELLEE 957 (1019)
Q Consensus 879 ~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvd-l~~LA~~TeG~SgaDL~~L~~~Aa~~Airr~l~~ 957 (1019)
.|+-++-.+++|. ..|...+.+.++..+||+..+..+.+.-+.+ +..|.......+-+--.+|+..|.+.+.++-
T Consensus 338 SphGiP~D~lDR~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk--- 413 (454)
T KOG2680|consen 338 SPHGIPIDLLDRM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRK--- 413 (454)
T ss_pred CCCCCcHHHhhhh-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhc---
Confidence 4566888999998 5667777899999999999998766542222 3444444444455666677777777776651
Q ss_pred HHhcCCCCCCCCccCCCHHHHHHHHHhhCCCc
Q 001735 958 ERKRGKNDAAPVLRPLKLEDFIQSKAKVGPSV 989 (1019)
Q Consensus 958 ~~~~~~~~~~~~~~pLT~eDF~~Al~kv~PS~ 989 (1019)
...+..+|+..+..-+-...
T Consensus 414 ------------~~~v~~~di~r~y~LFlD~~ 433 (454)
T KOG2680|consen 414 ------------GKVVEVDDIERVYRLFLDEK 433 (454)
T ss_pred ------------CceeehhHHHHHHHHHhhhh
Confidence 14577899999888775543
No 266
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.17 E-value=5.7e-06 Score=103.26 Aligned_cols=170 Identities=18% Similarity=0.154 Sum_probs=93.8
Q ss_pred cccChHHHHHHHHHHHHcccCCchhhc---cC----CCCCCCceEEEEcCCCChHHHHHHHHHHHhC-------CcEEEE
Q 001735 731 DIGALEDVKKALNELVILPMRRPDLFS---RG----NLLRPCKGILLFGPPGTGKTLLAKALATEAG-------ANFISI 796 (1019)
Q Consensus 731 DIgGle~vk~~L~e~V~~pL~~pelf~---~~----gl~~p~~gVLL~GPpGTGKT~LArAIA~elg-------~~fi~I 796 (1019)
.|.|.+.+|..|.-.+.--......+. .+ ..++...+|||.|+||||||.+|+++++... .++..+
T Consensus 451 ~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~v 530 (915)
T PTZ00111 451 SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSV 530 (915)
T ss_pred eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccc
Confidence 367889998887554432221110010 00 1234456899999999999999999998652 344444
Q ss_pred eccccchhhhhh--HHHHH-HHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhh----c--cccccC
Q 001735 797 TGSTLTSKWFGD--AEKLT-KALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAW----D--GLRSKE 867 (1019)
Q Consensus 797 s~seL~s~~~Ge--~e~~I-~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~L----d--gl~~~~ 867 (1019)
.+..... ..+. .+..+ ...+. .....+++|||++.+... . ...+.++|..= . |+...-
T Consensus 531 gLTa~~~-~~d~~tG~~~le~GaLv---lAdgGtL~IDEidkms~~--------~-Q~aLlEaMEqqtIsI~KaGi~~tL 597 (915)
T PTZ00111 531 GLTASIK-FNESDNGRAMIQPGAVV---LANGGVCCIDELDKCHNE--------S-RLSLYEVMEQQTVTIAKAGIVATL 597 (915)
T ss_pred cccchhh-hcccccCcccccCCcEE---EcCCCeEEecchhhCCHH--------H-HHHHHHHHhCCEEEEecCCcceec
Confidence 3332211 0000 00000 00011 112479999999998322 1 11122222110 0 222223
Q ss_pred CCcEEEEEecCCCC-------------CCcHHHHhhCCCCcc-cCCCCHHHHHHHHHHHH
Q 001735 868 SQKILILGATNRPF-------------DLDDAVIRRLPRRIY-VDLPDAENRMKILRIFL 913 (1019)
Q Consensus 868 ~~~VLVIaTTN~p~-------------~LD~aLlrRFd~~I~-V~lPd~eeR~eILk~~L 913 (1019)
+.++.||||+|+.. .|++++++||+..+. ++.|+.+.-..|..+++
T Consensus 598 ~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~ 657 (915)
T PTZ00111 598 KAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIA 657 (915)
T ss_pred CCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHH
Confidence 45788999999742 278999999986644 56788777666655554
No 267
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.17 E-value=0.00012 Score=85.42 Aligned_cols=67 Identities=12% Similarity=0.316 Sum_probs=53.7
Q ss_pred hhhHHHHHHhhhhcccCcccccccccccCCCCCceeeccCCChhHHHHHHHHHHHhhcCCcEEEeecCCCC
Q 001735 190 ENTKSLLVECVGSHLKHKKFTATFGARLTSSSGRILLRSVPGTELYRERLIRALARELQVPLLVLDSSVLA 260 (1019)
Q Consensus 190 e~tk~~L~~~~~~hL~~~~~~~~~~~~l~~~s~rILL~~~pgsE~Yqe~L~kALA~~~~a~LL~lDs~~l~ 260 (1019)
+..|.+|..|++-|.++..+.......+ ..+.|||.|||| ....+|||+||+.++++++.+|.+.+.
T Consensus 21 e~AkkalavAl~~~~~r~~l~~~~~~e~--~~~~ILliGp~G--~GKT~LAr~LAk~l~~~fi~vD~t~f~ 87 (443)
T PRK05201 21 DDAKRAVAIALRNRWRRMQLPEELRDEV--TPKNILMIGPTG--VGKTEIARRLAKLANAPFIKVEATKFT 87 (443)
T ss_pred HHHHHHHHHHHHHHHHHhcCCccccccc--CCceEEEECCCC--CCHHHHHHHHHHHhCChheeecchhhc
Confidence 8999999999999987765421111122 237899999999 899999999999999999999997444
No 268
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=1.1e-05 Score=100.73 Aligned_cols=127 Identities=22% Similarity=0.306 Sum_probs=91.4
Q ss_pred cccChHHHHHHHHHHHHcccCCchhhccCCCC--CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccch--
Q 001735 731 DIGALEDVKKALNELVILPMRRPDLFSRGNLL--RPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTS-- 803 (1019)
Q Consensus 731 DIgGle~vk~~L~e~V~~pL~~pelf~~~gl~--~p~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~s-- 803 (1019)
.|+|++++...+-+.|... +.|+. .|...+||.||.|+|||-||+|+|..+ .-.|+.++++++..
T Consensus 563 ~V~gQ~eAv~aIa~AI~~s--------r~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evs 634 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRS--------RAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVS 634 (898)
T ss_pred hccchHHHHHHHHHHHHhh--------hcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhh
Confidence 4788999999999988663 22222 366779999999999999999999987 45789999986321
Q ss_pred -------hhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcccccc-------CCC
Q 001735 804 -------KWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSK-------ESQ 869 (1019)
Q Consensus 804 -------~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~-------~~~ 869 (1019)
.|.|.. ....+.+..++.+.+||+|||||.- ...+++.|++.+|..+-. .-.
T Consensus 635 kligsp~gyvG~e--~gg~LteavrrrP~sVVLfdeIEkA------------h~~v~n~llq~lD~GrltDs~Gr~Vd~k 700 (898)
T KOG1051|consen 635 KLIGSPPGYVGKE--EGGQLTEAVKRRPYSVVLFEEIEKA------------HPDVLNILLQLLDRGRLTDSHGREVDFK 700 (898)
T ss_pred hccCCCcccccch--hHHHHHHHHhcCCceEEEEechhhc------------CHHHHHHHHHHHhcCccccCCCcEeecc
Confidence 133322 3346677778888899999999973 234566777777754322 224
Q ss_pred cEEEEEecCC
Q 001735 870 KILILGATNR 879 (1019)
Q Consensus 870 ~VLVIaTTN~ 879 (1019)
+++||.|+|.
T Consensus 701 N~I~IMTsn~ 710 (898)
T KOG1051|consen 701 NAIFIMTSNV 710 (898)
T ss_pred ceEEEEeccc
Confidence 6889999764
No 269
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.15 E-value=1.2e-05 Score=77.73 Aligned_cols=72 Identities=26% Similarity=0.470 Sum_probs=48.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--------CCcEEEEeccccch--hh------------h--hhHHHHHHHHHHHHH
Q 001735 766 KGILLFGPPGTGKTLLAKALATEA--------GANFISITGSTLTS--KW------------F--GDAEKLTKALFSFAS 821 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~el--------g~~fi~Is~seL~s--~~------------~--Ge~e~~I~~lF~~Ar 821 (1019)
..++|+||+|+|||++++.++... ..+++.++++.... .. . .........+.....
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 569999999999999999999987 67888887755431 00 0 112333444444445
Q ss_pred hcCCeEEEeccchhhh
Q 001735 822 KLAPVIIFVDEVDSLL 837 (1019)
Q Consensus 822 k~~PsIIfIDEID~L~ 837 (1019)
.....+|+|||+|.+.
T Consensus 85 ~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLF 100 (131)
T ss_dssp HCTEEEEEEETTHHHH
T ss_pred hcCCeEEEEeChHhcC
Confidence 5555699999999974
No 270
>PRK06921 hypothetical protein; Provisional
Probab=98.14 E-value=5e-06 Score=91.90 Aligned_cols=68 Identities=26% Similarity=0.301 Sum_probs=45.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEeccchh
Q 001735 765 CKGILLFGPPGTGKTLLAKALATEA----GANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDS 835 (1019)
Q Consensus 765 ~~gVLL~GPpGTGKT~LArAIA~el----g~~fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~ 835 (1019)
..+++|+||||+|||+|+.|||+++ |..+++++..+++....... ......+.. -....+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~--~~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNR--MKKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHH--hcCCCEEEEecccc
Confidence 3679999999999999999999986 67788888766544321111 111112221 23468999999944
No 271
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.13 E-value=4.7e-05 Score=89.19 Aligned_cols=83 Identities=24% Similarity=0.326 Sum_probs=62.1
Q ss_pred HHHHHHHhhcccCCCcccccccccccccchhhHHHHHHhhhhcccCcccccccccccCCCCCceeeccCCChhHHHHHHH
Q 001735 161 ERFKNEFSRRIVPWEKINISWDTFPYYINENTKSLLVECVGSHLKHKKFTATFGARLTSSSGRILLRSVPGTELYRERLI 240 (1019)
Q Consensus 161 ~~~~~~~~~~v~~~~~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~~l~~~s~rILL~~~pgsE~Yqe~L~ 240 (1019)
+.+++.|.+.||-. |+.|.+|..|+|-|.++-....+-..+.....+.|||.|||| ..+..||
T Consensus 63 ~~i~~~L~~~ViGq---------------~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~G--tGKT~lA 125 (412)
T PRK05342 63 KEIKAHLDQYVIGQ---------------ERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTG--SGKTLLA 125 (412)
T ss_pred HHHHHHHhhHeeCh---------------HHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCC--CCHHHHH
Confidence 34666666665554 899999999999998875321000013444667899999999 8999999
Q ss_pred HHHHhhcCCcEEEeecCCCC
Q 001735 241 RALARELQVPLLVLDSSVLA 260 (1019)
Q Consensus 241 kALA~~~~a~LL~lDs~~l~ 260 (1019)
|+||+.+++++..+|.+.+.
T Consensus 126 r~lA~~l~~pf~~id~~~l~ 145 (412)
T PRK05342 126 QTLARILDVPFAIADATTLT 145 (412)
T ss_pred HHHHHHhCCCceecchhhcc
Confidence 99999999999999987443
No 272
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.10 E-value=0.00019 Score=83.64 Aligned_cols=68 Identities=13% Similarity=0.332 Sum_probs=54.4
Q ss_pred chhhHHHHHHhhhhcccCcccccccccccCCCCCceeeccCCChhHHHHHHHHHHHhhcCCcEEEeecCCCC
Q 001735 189 NENTKSLLVECVGSHLKHKKFTATFGARLTSSSGRILLRSVPGTELYRERLIRALARELQVPLLVLDSSVLA 260 (1019)
Q Consensus 189 se~tk~~L~~~~~~hL~~~~~~~~~~~~l~~~s~rILL~~~pgsE~Yqe~L~kALA~~~~a~LL~lDs~~l~ 260 (1019)
-++.|.+|.-|+|.|.++..+...-.... ..+.|||.|||| ....+||||||+.++++++-+|.+.+.
T Consensus 17 Q~eAkk~lsvAl~n~~~r~~~~~~~~~e~--~p~~ILLiGppG--~GKT~lAraLA~~l~~~fi~vdat~~~ 84 (441)
T TIGR00390 17 QDNAKKSVAIALRNRYRRSQLNEELKDEV--TPKNILMIGPTG--VGKTEIARRLAKLANAPFIKVEATKFT 84 (441)
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccc--CCceEEEECCCC--CCHHHHHHHHHHHhCCeEEEeecceee
Confidence 38999999999999977765421111222 337899999999 899999999999999999999998553
No 273
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.10 E-value=3.8e-05 Score=94.11 Aligned_cols=48 Identities=27% Similarity=0.430 Sum_probs=41.2
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAG 790 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg 790 (1019)
..|+++.|+++++..|...+.. .++++|+||||||||++|++++..+.
T Consensus 28 ~~~~~vigq~~a~~~L~~~~~~----------------~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKKAAKQ----------------RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred ccHHHcCChHHHHHHHHHHHHh----------------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 6799999999999998876632 13699999999999999999998774
No 274
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.09 E-value=2e-05 Score=92.87 Aligned_cols=166 Identities=22% Similarity=0.324 Sum_probs=95.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhhHHHHHHHHHHH---------------HHhcCCeE
Q 001735 766 KGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGDAEKLTKALFSF---------------ASKLAPVI 827 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~Ge~e~~I~~lF~~---------------Ark~~PsI 827 (1019)
..++|.|.+||||+++|+++.... +.+|+.++|..+...+.. ..+|.. ......++
T Consensus 158 ~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~------~~lfg~~~~~~~~~~~~~~g~~~~a~~gt 231 (463)
T TIGR01818 158 ITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE------SELFGHEKGAFTGANTRRQGRFEQADGGT 231 (463)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH------HHhcCCCCCCCCCcccCCCCcEEECCCCe
Confidence 469999999999999999998775 579999999887433221 111210 11223578
Q ss_pred EEeccchhhhhccCCCchhHHHHHHHHHHHhhhcccc-------ccCCCcEEEEEecCCC-------CCCcHHHHhhCCC
Q 001735 828 IFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR-------SKESQKILILGATNRP-------FDLDDAVIRRLPR 893 (1019)
Q Consensus 828 IfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~-------~~~~~~VLVIaTTN~p-------~~LD~aLlrRFd~ 893 (1019)
||||||+.|... . ...|+..++.-. ......+.||+||+.. ..+.+.+..|+.
T Consensus 232 l~l~ei~~l~~~--------~----q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~rl~- 298 (463)
T TIGR01818 232 LFLDEIGDMPLD--------A----QTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFHRLN- 298 (463)
T ss_pred EEEEchhhCCHH--------H----HHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHHHhC-
Confidence 999999998422 2 223333332110 0011246688888654 235567777774
Q ss_pred CcccCCCCH----HHHHHHHHHHHhccCC----C-CccCHHHHHHHh-cCCC--HHHHHHHHHHHHHHH
Q 001735 894 RIYVDLPDA----ENRMKILRIFLAHESL----E-SGFQFNELANAT-EGYS--GSDLKNLCIAAAYRP 950 (1019)
Q Consensus 894 ~I~V~lPd~----eeR~eILk~~L~~~~l----~-~dvdl~~LA~~T-eG~S--gaDL~~L~~~Aa~~A 950 (1019)
.+.+.+|.. ++...++.+++..... . ..++-+.+.... .+|. .++|++++..|+..+
T Consensus 299 ~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~ 367 (463)
T TIGR01818 299 VIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMA 367 (463)
T ss_pred cceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 334444443 4445556655543211 1 123333333222 2444 489999998887644
No 275
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.06 E-value=2.8e-05 Score=76.82 Aligned_cols=72 Identities=29% Similarity=0.390 Sum_probs=49.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhh------------------------hhhHHHHHHHHHHHH
Q 001735 768 ILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKW------------------------FGDAEKLTKALFSFA 820 (1019)
Q Consensus 768 VLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~s~~------------------------~Ge~e~~I~~lF~~A 820 (1019)
++|+||||+|||+++..++... +.+++.++........ ...........+..+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 7899999999999999998887 5677777664432211 011122223345556
Q ss_pred HhcCCeEEEeccchhhhhc
Q 001735 821 SKLAPVIIFVDEVDSLLGA 839 (1019)
Q Consensus 821 rk~~PsIIfIDEID~L~~~ 839 (1019)
....|.+|+|||+..+...
T Consensus 82 ~~~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 82 ERGGDDLIILDELTRLVRA 100 (165)
T ss_pred hCCCCEEEEEEcHHHHHHH
Confidence 6778999999999998644
No 276
>PRK15115 response regulator GlrR; Provisional
Probab=98.02 E-value=6.2e-05 Score=88.35 Aligned_cols=165 Identities=20% Similarity=0.311 Sum_probs=94.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhhHHHHHHHHHHHH---------------HhcCCeE
Q 001735 766 KGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGDAEKLTKALFSFA---------------SKLAPVI 827 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~Ge~e~~I~~lF~~A---------------rk~~PsI 827 (1019)
..|+|+|++|||||++|+++.... +.+|+.++|..+..... -..+|..+ ......+
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~gt 231 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLL------ESELFGHARGAFTGAVSNREGLFQAAEGGT 231 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHH------HHHhcCCCcCCCCCCccCCCCcEEECCCCE
Confidence 469999999999999999998875 57999999988743221 11223211 1223579
Q ss_pred EEeccchhhhhccCCCchhHHHHHHHHHHHhhhcccc-------ccCCCcEEEEEecCCC-------CCCcHHHHhhCCC
Q 001735 828 IFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR-------SKESQKILILGATNRP-------FDLDDAVIRRLPR 893 (1019)
Q Consensus 828 IfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~-------~~~~~~VLVIaTTN~p-------~~LD~aLlrRFd~ 893 (1019)
|||||||.|... . ...|+..++.-. ......+.+|+||+.. ..+.+.+..|+ .
T Consensus 232 l~l~~i~~l~~~--------~----q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l-~ 298 (444)
T PRK15115 232 LFLDEIGDMPAP--------L----QVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRL-N 298 (444)
T ss_pred EEEEccccCCHH--------H----HHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhh-c
Confidence 999999998432 1 223333332110 0111257888888753 12333444454 2
Q ss_pred CcccCCCCHHHHHH----HHHHHHhcc----CCC-CccC---HHHHHHHhcCCCHHHHHHHHHHHHHH
Q 001735 894 RIYVDLPDAENRMK----ILRIFLAHE----SLE-SGFQ---FNELANATEGYSGSDLKNLCIAAAYR 949 (1019)
Q Consensus 894 ~I~V~lPd~eeR~e----ILk~~L~~~----~l~-~dvd---l~~LA~~TeG~SgaDL~~L~~~Aa~~ 949 (1019)
.+.+..|...+|.+ ++++++... ... ..+. +..|....=.-+.++|++++..|+..
T Consensus 299 ~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~ 366 (444)
T PRK15115 299 VVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVAL 366 (444)
T ss_pred eeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 45566777777743 445555432 111 1123 33333333122568999998887653
No 277
>PF05729 NACHT: NACHT domain
Probab=97.97 E-value=3.2e-05 Score=77.06 Aligned_cols=140 Identities=16% Similarity=0.244 Sum_probs=72.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC--------Cc-EEEEeccccchh------------hhhhHHHHHHH-HHHHHHhcC
Q 001735 767 GILLFGPPGTGKTLLAKALATEAG--------AN-FISITGSTLTSK------------WFGDAEKLTKA-LFSFASKLA 824 (1019)
Q Consensus 767 gVLL~GPpGTGKT~LArAIA~elg--------~~-fi~Is~seL~s~------------~~Ge~e~~I~~-lF~~Ark~~ 824 (1019)
-++|+|+||+|||++++.++..+. .. ++.+.+.+.... ........+.. .........
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 489999999999999999998761 12 223333322111 01111111111 122234456
Q ss_pred CeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHhhCC--CCcccCCCCH
Q 001735 825 PVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLP--RRIYVDLPDA 902 (1019)
Q Consensus 825 PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd--~~I~V~lPd~ 902 (1019)
..+|+||.+|.+...... .........+...+... ...+ +-+|.|+. +..... +.+.+. ..+.++..+.
T Consensus 82 ~~llilDglDE~~~~~~~----~~~~~~~~~l~~l~~~~-~~~~--~~liit~r-~~~~~~-~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS----QERQRLLDLLSQLLPQA-LPPG--VKLIITSR-PRAFPD-LRRRLKQAQILELEPFSE 152 (166)
T ss_pred ceEEEEechHhcccchhh----hHHHHHHHHHHHHhhhc-cCCC--CeEEEEEc-CChHHH-HHHhcCCCcEEEECCCCH
Confidence 789999999998653221 01111222222222221 1122 33333332 222222 444333 3477888899
Q ss_pred HHHHHHHHHHHhc
Q 001735 903 ENRMKILRIFLAH 915 (1019)
Q Consensus 903 eeR~eILk~~L~~ 915 (1019)
+++.++++.++..
T Consensus 153 ~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 153 EDIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999988753
No 278
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.96 E-value=0.00015 Score=82.37 Aligned_cols=60 Identities=12% Similarity=0.026 Sum_probs=46.5
Q ss_pred hhhcccccCCCcchHHHHhcccceEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001735 563 RLTEGLKATKRSDDNEIYNLFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHK 623 (1019)
Q Consensus 563 ~LvIGmTNR~d~iDeaL~rrFe~~~eI~LPdee~Rl~Il~Iht~k~~~~~~~~~~v~~l~~ 623 (1019)
..+||+||+...++++|+.||...++|++|+.+.+.+|++.+.... .....++-++.++.
T Consensus 151 ~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~-~~~~~~~~~~~ia~ 210 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARIL-GVEIDEEGALEIAR 210 (328)
T ss_pred ceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHc-CCCcCHHHHHHHHH
Confidence 3579999999999999999999999999999999999999875442 22333333445544
No 279
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.88 E-value=3e-05 Score=94.26 Aligned_cols=124 Identities=14% Similarity=0.146 Sum_probs=81.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEeccccchhhhhhH--HHHHH--------HHHHHHHhcCCeEEEeccc
Q 001735 766 KGILLFGPPGTGKTLLAKALATEAG--ANFISITGSTLTSKWFGDA--EKLTK--------ALFSFASKLAPVIIFVDEV 833 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~elg--~~fi~Is~seL~s~~~Ge~--e~~I~--------~lF~~Ark~~PsIIfIDEI 833 (1019)
.||||.|++||||++++++++.-+. .||+.+..+--....+|.. +..+. .++..| ...||||||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~A---h~GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEA---DGGVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeec---cCCEEEecCc
Confidence 5799999999999999999999874 5887765443222233321 22221 111111 2379999999
Q ss_pred hhhhhccCCCchhHHHHHHHHHHHhhhc---------cccccCCCcEEEEEecCCC---CCCcHHHHhhCCCCcccCCCC
Q 001735 834 DSLLGARGGAFEHEATRRMRNEFMSAWD---------GLRSKESQKILILGATNRP---FDLDDAVIRRLPRRIYVDLPD 901 (1019)
Q Consensus 834 D~L~~~r~~~~~~e~~~ril~~LL~~Ld---------gl~~~~~~~VLVIaTTN~p---~~LD~aLlrRFd~~I~V~lPd 901 (1019)
..+- .+++..|+..|+ +....-..++++|+|-|.. ..|.+++++||+..+.++.|+
T Consensus 103 n~~~------------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~~ 170 (584)
T PRK13406 103 ERLE------------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGLA 170 (584)
T ss_pred ccCC------------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCCC
Confidence 8863 345566666554 2222334578889874432 348999999999999999877
Q ss_pred HHH
Q 001735 902 AEN 904 (1019)
Q Consensus 902 ~ee 904 (1019)
..+
T Consensus 171 ~~~ 173 (584)
T PRK13406 171 LRD 173 (584)
T ss_pred hHH
Confidence 543
No 280
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.88 E-value=0.00021 Score=79.79 Aligned_cols=60 Identities=12% Similarity=0.050 Sum_probs=46.0
Q ss_pred hhhcccccCCCcchHHHHhcccceEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001735 563 RLTEGLKATKRSDDNEIYNLFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHK 623 (1019)
Q Consensus 563 ~LvIGmTNR~d~iDeaL~rrFe~~~eI~LPdee~Rl~Il~Iht~k~~~~~~~~~~v~~l~~ 623 (1019)
..+||+||++..++++|+.||...+.|.+|+.+...+|++...... .....++-++.++.
T Consensus 130 ~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~-~~~~~~~al~~ia~ 189 (305)
T TIGR00635 130 FTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLL-NVEIEPEAALEIAR 189 (305)
T ss_pred eEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHh-CCCcCHHHHHHHHH
Confidence 4688999999999999999999999999999999999998775432 22233333445544
No 281
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.88 E-value=0.00014 Score=85.05 Aligned_cols=83 Identities=27% Similarity=0.353 Sum_probs=62.0
Q ss_pred HHHHHHHhhcccCCCcccccccccccccchhhHHHHHHhhhhcccCcccc-cccc-cccCCCCCceeeccCCChhHHHHH
Q 001735 161 ERFKNEFSRRIVPWEKINISWDTFPYYINENTKSLLVECVGSHLKHKKFT-ATFG-ARLTSSSGRILLRSVPGTELYRER 238 (1019)
Q Consensus 161 ~~~~~~~~~~v~~~~~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~-~~~~-~~l~~~s~rILL~~~pgsE~Yqe~ 238 (1019)
..+++.|.+.||-- |+.|..|.-|+|-|.+.-... .... .+..-....|||.|||| .....
T Consensus 69 ~~i~~~L~~~ViGQ---------------e~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~G--sGKT~ 131 (413)
T TIGR00382 69 KEIKAHLDEYVIGQ---------------EQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTG--SGKTL 131 (413)
T ss_pred HHHHHHhcceecCH---------------HHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCC--cCHHH
Confidence 44777777776654 899999999999998874320 0000 11223457899999999 89999
Q ss_pred HHHHHHhhcCCcEEEeecCCCC
Q 001735 239 LIRALARELQVPLLVLDSSVLA 260 (1019)
Q Consensus 239 L~kALA~~~~a~LL~lDs~~l~ 260 (1019)
|||+||+.+++++.++|.+.|.
T Consensus 132 lAraLA~~l~~pf~~~da~~L~ 153 (413)
T TIGR00382 132 LAQTLARILNVPFAIADATTLT 153 (413)
T ss_pred HHHHHHHhcCCCeEEechhhcc
Confidence 9999999999999988876443
No 282
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.84 E-value=0.00024 Score=79.59 Aligned_cols=118 Identities=14% Similarity=0.124 Sum_probs=76.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCc----------------EEEEeccccchhhhhhHHHHHHHHHHHHHh----
Q 001735 763 RPCKGILLFGPPGTGKTLLAKALATEAGAN----------------FISITGSTLTSKWFGDAEKLTKALFSFASK---- 822 (1019)
Q Consensus 763 ~p~~gVLL~GPpGTGKT~LArAIA~elg~~----------------fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark---- 822 (1019)
+-++.+||+||.|+||+.+|.++|..+-+. ++.+.+.. .+... .-..++.+-..+..
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~-~~~~I--~idqiR~l~~~~~~~p~e 93 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQG-KGRLH--SIETPRAIKKQIWIHPYE 93 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCC-CCCcC--cHHHHHHHHHHHhhCccC
Confidence 345789999999999999999999987431 22221110 00000 12234444444332
Q ss_pred cCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHhhCCCCcccCCC
Q 001735 823 LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLP 900 (1019)
Q Consensus 823 ~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~lP 900 (1019)
....|++||++|.+.. ...|.|+..|+. +..++++|..|+.++.|.+.+++|+ ..+.|+.+
T Consensus 94 ~~~kv~ii~~ad~mt~------------~AaNaLLK~LEE----Pp~~~~fiL~~~~~~~ll~TI~SRc-q~~~~~~~ 154 (290)
T PRK05917 94 SPYKIYIIHEADRMTL------------DAISAFLKVLED----PPQHGVIILTSAKPQRLPPTIRSRS-LSIHIPME 154 (290)
T ss_pred CCceEEEEechhhcCH------------HHHHHHHHHhhc----CCCCeEEEEEeCChhhCcHHHHhcc-eEEEccch
Confidence 2346999999999842 234667777655 3457888888889999999999998 45666543
No 283
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.83 E-value=8.6e-05 Score=85.62 Aligned_cols=103 Identities=17% Similarity=0.229 Sum_probs=56.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCC-cEEEEeccccchhhhhhHH------HHHHHHHHHHHhcCCeEEEeccch
Q 001735 762 LRPCKGILLFGPPGTGKTLLAKALATEAGA-NFISITGSTLTSKWFGDAE------KLTKALFSFASKLAPVIIFVDEVD 834 (1019)
Q Consensus 762 ~~p~~gVLL~GPpGTGKT~LArAIA~elg~-~fi~Is~seL~s~~~Ge~e------~~I~~lF~~Ark~~PsIIfIDEID 834 (1019)
..+++|++||||+|+|||+|.-.+...+.. .-..+.-..++........ ..+..+-... .....||+|||++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l-~~~~~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADEL-AKESRLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHH-HhcCCEEEEeeee
Confidence 457899999999999999999999887743 1111111122211111110 1111111111 1123599999997
Q ss_pred hhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCC
Q 001735 835 SLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP 880 (1019)
Q Consensus 835 ~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p 880 (1019)
.- ......++..|+..+- ...+++|+|+|.+
T Consensus 138 V~---------DiaDAmil~rLf~~l~------~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 138 VT---------DIADAMILKRLFEALF------KRGVVLVATSNRP 168 (362)
T ss_pred cc---------chhHHHHHHHHHHHHH------HCCCEEEecCCCC
Confidence 63 1112233344444331 2468999999875
No 284
>CHL00181 cbbX CbbX; Provisional
Probab=97.81 E-value=0.0001 Score=82.42 Aligned_cols=98 Identities=13% Similarity=0.166 Sum_probs=69.0
Q ss_pred HHHHHHHhhcCCeEEEEcCchhhhhcccCCccHHHHHHHHHHHHhcCCCCEEEEecccCCCCCccccccccccccccccc
Q 001735 475 EALCEVLHSTQPLIVYFPDSSLWLSRAVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPNFGRL 554 (1019)
Q Consensus 475 ~~L~e~~~~~~p~Iiff~eid~~~~~~~~~~~~~~~~s~~~~~l~~l~g~v~vI~~~~~~d~~~~~~~~~~~~~~~~~~~ 554 (1019)
..+|+.+ .+-||||||++.+....-..+...+....|...|+.-.+.++||++++... .+. +
T Consensus 115 ~~~l~~a---~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~-~~~----~---------- 176 (287)
T CHL00181 115 KEVLKKA---MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDR-MDK----F---------- 176 (287)
T ss_pred HHHHHHc---cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHH-HHH----H----------
Confidence 4555554 567999999998864211111234667788888887778888887654311 000 0
Q ss_pred cCCCCchhhhhcccccCCCcchHHHHhcccceEEEcCCChHHHHHHHHHHHHHH
Q 001735 555 AKLPLPLQRLTEGLKATKRSDDNEIYNLFTNVLSIHPPKEEDLLRTFNKQVEED 608 (1019)
Q Consensus 555 ~~~~~~~~~LvIGmTNR~d~iDeaL~rrFe~~~eI~LPdee~Rl~Il~Iht~k~ 608 (1019)
-.++++|++||+.+++|++++.+.+.+|++..+.+.
T Consensus 177 ------------------~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~ 212 (287)
T CHL00181 177 ------------------YESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQ 212 (287)
T ss_pred ------------------HhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHh
Confidence 124589999999999999999999999999987654
No 285
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.79 E-value=1.2e-05 Score=89.31 Aligned_cols=140 Identities=19% Similarity=0.306 Sum_probs=78.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC-Cc--EEEEeccccchhhhhhHHHHHHHHHHHH----Hh-------cCCeEEEe
Q 001735 765 CKGILLFGPPGTGKTLLAKALATEAG-AN--FISITGSTLTSKWFGDAEKLTKALFSFA----SK-------LAPVIIFV 830 (1019)
Q Consensus 765 ~~gVLL~GPpGTGKT~LArAIA~elg-~~--fi~Is~seL~s~~~Ge~e~~I~~lF~~A----rk-------~~PsIIfI 830 (1019)
.+++||.||+|||||++++.....+. .. ...++++... ....+..+.+.. ++ .+..|+||
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fi 106 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFI 106 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESSSEEEEEE
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEe
Confidence 36799999999999999999877653 22 3334443321 112222222111 11 12369999
Q ss_pred ccchhhhhccCCCchhHHHHHHHHHHHhhhcccccc------CCCcEEEEEecCCCC---CCcHHHHhhCCCCcccCCCC
Q 001735 831 DEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSK------ESQKILILGATNRPF---DLDDAVIRRLPRRIYVDLPD 901 (1019)
Q Consensus 831 DEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~------~~~~VLVIaTTN~p~---~LD~aLlrRFd~~I~V~lPd 901 (1019)
||+..-.....+.. ..-.++.+++.. .|.... .-..+.+||+++.+. .+++.++|.| ..+.++.|+
T Consensus 107 DDlN~p~~d~ygtq---~~iElLRQ~i~~-~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f-~i~~~~~p~ 181 (272)
T PF12775_consen 107 DDLNMPQPDKYGTQ---PPIELLRQLIDY-GGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHF-NILNIPYPS 181 (272)
T ss_dssp ETTT-S---TTS-----HHHHHHHHHHHC-SEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTE-EEEE----T
T ss_pred cccCCCCCCCCCCc---CHHHHHHHHHHh-cCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhhe-EEEEecCCC
Confidence 99987654443321 112333333322 122211 113577889887643 3788888888 688899999
Q ss_pred HHHHHHHHHHHHhc
Q 001735 902 AENRMKILRIFLAH 915 (1019)
Q Consensus 902 ~eeR~eILk~~L~~ 915 (1019)
.+....|+..++..
T Consensus 182 ~~sl~~If~~il~~ 195 (272)
T PF12775_consen 182 DESLNTIFSSILQS 195 (272)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhh
Confidence 99999999888764
No 286
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.78 E-value=0.00015 Score=78.87 Aligned_cols=128 Identities=22% Similarity=0.204 Sum_probs=74.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCch
Q 001735 766 KGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFE 845 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~ 845 (1019)
.+-.++||+|||||.+++++|..+|.+++.++|++.+. ...+.++|.-+... .+-+++||++++-
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~-GaW~cfdefnrl~-------- 97 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQS-GAWLCFDEFNRLS-------- 97 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCSS--------
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhc-Cchhhhhhhhhhh--------
Confidence 45778999999999999999999999999999988654 34566677655443 5889999999983
Q ss_pred hHHHHHHHH---HHHhhhccccc---------cCCCcEEEEEecCCC----CCCcHHHHhhCCCCcccCCCCHHHHHHHH
Q 001735 846 HEATRRMRN---EFMSAWDGLRS---------KESQKILILGATNRP----FDLDDAVIRRLPRRIYVDLPDAENRMKIL 909 (1019)
Q Consensus 846 ~e~~~ril~---~LL~~Ldgl~~---------~~~~~VLVIaTTN~p----~~LD~aLlrRFd~~I~V~lPd~eeR~eIL 909 (1019)
.+....+.. .+...+..-.. .-+...-+..|.|.. ..|++.++.-| +.+.+-.||.....+++
T Consensus 98 ~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lF-Rpvam~~PD~~~I~ei~ 176 (231)
T PF12774_consen 98 EEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALF-RPVAMMVPDLSLIAEIL 176 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTE-EEEE--S--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHh-heeEEeCCCHHHHHHHH
Confidence 222222222 22222221100 001123344455533 45888888877 77888889977666654
No 287
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.78 E-value=0.00018 Score=78.98 Aligned_cols=156 Identities=18% Similarity=0.119 Sum_probs=80.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHH--hCCc---EEEEeccccc------h----h---h------hhhHHHHHHHHHHH
Q 001735 764 PCKGILLFGPPGTGKTLLAKALATE--AGAN---FISITGSTLT------S----K---W------FGDAEKLTKALFSF 819 (1019)
Q Consensus 764 p~~gVLL~GPpGTGKT~LArAIA~e--lg~~---fi~Is~seL~------s----~---~------~Ge~e~~I~~lF~~ 819 (1019)
..+.|.|+|++|+|||+||..+++. .... ++.++...-. . . . ....+.....+...
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 97 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLREL 97 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHH
T ss_pred CeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence 4467999999999999999999987 3222 2223322110 0 0 0 01123333444443
Q ss_pred HHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHhhCCCCcccCC
Q 001735 820 ASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDL 899 (1019)
Q Consensus 820 Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~l 899 (1019)
. ...+++|+||+++... .+..+...+.. ...+.-||.||....... .+... ...+.++.
T Consensus 98 L-~~~~~LlVlDdv~~~~--------------~~~~l~~~~~~----~~~~~kilvTTR~~~v~~-~~~~~-~~~~~l~~ 156 (287)
T PF00931_consen 98 L-KDKRCLLVLDDVWDEE--------------DLEELREPLPS----FSSGSKILVTTRDRSVAG-SLGGT-DKVIELEP 156 (287)
T ss_dssp H-CCTSEEEEEEEE-SHH--------------HH-------HC----HHSS-EEEEEESCGGGGT-THHSC-EEEEECSS
T ss_pred h-ccccceeeeeeecccc--------------ccccccccccc----cccccccccccccccccc-ccccc-cccccccc
Confidence 3 3448999999998642 11222222211 112344666775532211 11111 35678888
Q ss_pred CCHHHHHHHHHHHHhccC----CCCccCHHHHHHHhcCCCHHHHHH
Q 001735 900 PDAENRMKILRIFLAHES----LESGFQFNELANATEGYSGSDLKN 941 (1019)
Q Consensus 900 Pd~eeR~eILk~~L~~~~----l~~dvdl~~LA~~TeG~SgaDL~~ 941 (1019)
.+.++-.++|........ .........|++.+.|. +-.|..
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLal~~ 201 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGL-PLALKL 201 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 899999999998876443 11122356788888774 444443
No 288
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.76 E-value=0.00029 Score=82.46 Aligned_cols=165 Identities=19% Similarity=0.313 Sum_probs=92.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhhHHHHHHHHHHH---------------HHhcCCeE
Q 001735 766 KGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGDAEKLTKALFSF---------------ASKLAPVI 827 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~Ge~e~~I~~lF~~---------------Ark~~PsI 827 (1019)
..++|+|.+||||+++|+++.... +.+|+.++|..+...... ..+|.. ......++
T Consensus 163 ~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~------~~lfg~~~~~~~~~~~~~~g~~~~a~~gt 236 (441)
T PRK10365 163 ATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLE------SELFGHEKGAFTGADKRREGRFVEADGGT 236 (441)
T ss_pred CeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHH------HHhcCCCCCCcCCCCcCCCCceeECCCCE
Confidence 569999999999999999998765 579999999876533221 112221 11224689
Q ss_pred EEeccchhhhhccCCCchhHHHHHHHHHHHhhhcccc-------ccCCCcEEEEEecCCCC-------CCcHHHHhhCCC
Q 001735 828 IFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR-------SKESQKILILGATNRPF-------DLDDAVIRRLPR 893 (1019)
Q Consensus 828 IfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~-------~~~~~~VLVIaTTN~p~-------~LD~aLlrRFd~ 893 (1019)
||||||+.|... . ...|+..++.-. ......+.+|+||+..- .+.+.+..|+ .
T Consensus 237 l~ldei~~l~~~--------~----q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l-~ 303 (441)
T PRK10365 237 LFLDEIGDISPM--------M----QVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL-N 303 (441)
T ss_pred EEEeccccCCHH--------H----HHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHh-c
Confidence 999999998432 1 223333332210 00112456777775531 2444555565 3
Q ss_pred CcccCCCCHHHHHH----HHHHHHhccC----CC-CccCHHHHHHHh-cCC--CHHHHHHHHHHHHHH
Q 001735 894 RIYVDLPDAENRMK----ILRIFLAHES----LE-SGFQFNELANAT-EGY--SGSDLKNLCIAAAYR 949 (1019)
Q Consensus 894 ~I~V~lPd~eeR~e----ILk~~L~~~~----l~-~dvdl~~LA~~T-eG~--SgaDL~~L~~~Aa~~ 949 (1019)
.+.+..|...+|.+ ++.+++.... .. ..+.-..+.... ..| +.++|+++++.|+..
T Consensus 304 ~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~ 371 (441)
T PRK10365 304 VVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVL 371 (441)
T ss_pred cceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Confidence 45666676665543 5555554321 10 112323232222 223 457888888776653
No 289
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.75 E-value=0.0012 Score=74.24 Aligned_cols=150 Identities=15% Similarity=0.111 Sum_probs=89.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCc------------------------EEEEeccccchhhhhhHHHHHHHHHH
Q 001735 763 RPCKGILLFGPPGTGKTLLAKALATEAGAN------------------------FISITGSTLTSKWFGDAEKLTKALFS 818 (1019)
Q Consensus 763 ~p~~gVLL~GPpGTGKT~LArAIA~elg~~------------------------fi~Is~seL~s~~~Ge~e~~I~~lF~ 818 (1019)
+.+..+||+|| +||+.+|.++|..+-+. ++.+.... .. -.-..++.+..
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~---~~--I~idqIR~l~~ 94 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQG---QV--IKTDTIRELVK 94 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCC---Cc--CCHHHHHHHHH
Confidence 34578999996 68999999999876221 11121110 00 01233444444
Q ss_pred HHHh----cCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHhhCCCC
Q 001735 819 FASK----LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRR 894 (1019)
Q Consensus 819 ~Ark----~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~ 894 (1019)
.+.. ....|++||++|.+.. ...|.||..++. +..++++|.+|+.++.+-+.+++|+ ..
T Consensus 95 ~~~~~p~~~~~kV~II~~ad~m~~------------~AaNaLLKtLEE----Pp~~t~~iL~t~~~~~lLpTI~SRc-q~ 157 (290)
T PRK07276 95 NFSQSGYEGKQQVFIIKDADKMHV------------NAANSLLKVIEE----PQSEIYIFLLTNDENKVLPTIKSRT-QI 157 (290)
T ss_pred HHhhCcccCCcEEEEeehhhhcCH------------HHHHHHHHHhcC----CCCCeEEEEEECChhhCchHHHHcc-ee
Confidence 3332 2346999999999842 235677777765 3346788888888999999999999 67
Q ss_pred cccCCCCHHHHHHHHHHHHhccCCCCccCHHHHHHHhcCCCHHHHHHHHH
Q 001735 895 IYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCI 944 (1019)
Q Consensus 895 I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeG~SgaDL~~L~~ 944 (1019)
+.|+. +.+...+++. ..++.. +...++....| +......+..
T Consensus 158 i~f~~-~~~~~~~~L~----~~g~~~--~~a~~la~~~~-s~~~A~~l~~ 199 (290)
T PRK07276 158 FHFPK-NEAYLIQLLE----QKGLLK--TQAELLAKLAQ-STSEAEKLAQ 199 (290)
T ss_pred eeCCC-cHHHHHHHHH----HcCCCh--HHHHHHHHHCC-CHHHHHHHhC
Confidence 77755 4444444443 333322 22333444445 5555555553
No 290
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.72 E-value=0.00058 Score=75.24 Aligned_cols=121 Identities=12% Similarity=0.063 Sum_probs=77.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------------------EEEEeccccchhhhhhHHHHHHHHHHH
Q 001735 762 LRPCKGILLFGPPGTGKTLLAKALATEAGAN----------------------FISITGSTLTSKWFGDAEKLTKALFSF 819 (1019)
Q Consensus 762 ~~p~~gVLL~GPpGTGKT~LArAIA~elg~~----------------------fi~Is~seL~s~~~Ge~e~~I~~lF~~ 819 (1019)
..++..+||+||.|+||..+|.++|..+-+. +..+.... ..-...+....+..+...
T Consensus 4 ~~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~-~~I~id~ir~l~~~l~~~ 82 (261)
T PRK05818 4 KNKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQK-NPIKKEDALSIINKLNRP 82 (261)
T ss_pred CCCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCc-ccCCHHHHHHHHHHHccC
Confidence 3567889999999999999999999876221 12211110 000112222222222222
Q ss_pred HHh-cCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHhhCCCCcccC
Q 001735 820 ASK-LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVD 898 (1019)
Q Consensus 820 Ark-~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~ 898 (1019)
+.. ....|++|+++|.+. ....|.||..++. +..++++|.+|+.++.+.+.+++|+ ..+.++
T Consensus 83 s~e~~~~KV~II~~ae~m~------------~~AaNaLLK~LEE----Pp~~t~fiLit~~~~~lLpTI~SRC-q~~~~~ 145 (261)
T PRK05818 83 SVESNGKKIYIIYGIEKLN------------KQSANSLLKLIEE----PPKNTYGIFTTRNENNILNTILSRC-VQYVVL 145 (261)
T ss_pred chhcCCCEEEEeccHhhhC------------HHHHHHHHHhhcC----CCCCeEEEEEECChHhCchHhhhhe-eeeecC
Confidence 211 235799999999983 2335677777765 3457888889999999999999998 445666
Q ss_pred CC
Q 001735 899 LP 900 (1019)
Q Consensus 899 lP 900 (1019)
.+
T Consensus 146 ~~ 147 (261)
T PRK05818 146 SK 147 (261)
T ss_pred Ch
Confidence 55
No 291
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=97.68 E-value=0.00045 Score=83.27 Aligned_cols=171 Identities=24% Similarity=0.252 Sum_probs=92.5
Q ss_pred ccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE-eccccch--hhh--
Q 001735 732 IGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISI-TGSTLTS--KWF-- 806 (1019)
Q Consensus 732 IgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~I-s~seL~s--~~~-- 806 (1019)
|-|++++|+-|.-.+.- .....+.+++..+..-+|||+|.||||||.|.+.+++-+-.-.+.- ..+.-.+ .|+
T Consensus 431 Iye~edvKkglLLqLfG--Gt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVtr 508 (804)
T KOG0478|consen 431 IYELEDVKKGLLLQLFG--GTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVTK 508 (804)
T ss_pred hhcccchhhhHHHHHhc--CCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEEe
Confidence 56788888877543322 2223344444455567899999999999999999998762211110 0000000 000
Q ss_pred -hhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHh------hhccccccCCCcEEEEEecCC
Q 001735 807 -GDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS------AWDGLRSKESQKILILGATNR 879 (1019)
Q Consensus 807 -Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~------~Ldgl~~~~~~~VLVIaTTN~ 879 (1019)
+++.+.+-+-=. .-.....|.+|||+|.|... .+.++.+.|. ..-|+...-+.+.-|||++|+
T Consensus 509 d~dtkqlVLesGA-LVLSD~GiCCIDEFDKM~dS---------trSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP 578 (804)
T KOG0478|consen 509 DPDTRQLVLESGA-LVLSDNGICCIDEFDKMSDS---------TRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANP 578 (804)
T ss_pred cCccceeeeecCc-EEEcCCceEEchhhhhhhHH---------HHHHHHHHHHHhhhhHhhcceeeeccccceeeeeecc
Confidence 000000000000 00123579999999998432 2223333221 222333334456679999984
Q ss_pred CC-------------CCcHHHHhhCCCCcc-cCCCCHHHHHHHHHHHHh
Q 001735 880 PF-------------DLDDAVIRRLPRRIY-VDLPDAENRMKILRIFLA 914 (1019)
Q Consensus 880 p~-------------~LD~aLlrRFd~~I~-V~lPd~eeR~eILk~~L~ 914 (1019)
.. .|++.|++||+.++- ++.||...-+.+-.++..
T Consensus 579 ~~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~Hivs 627 (804)
T KOG0478|consen 579 IRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHIVA 627 (804)
T ss_pred ccccCCCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHHHHH
Confidence 32 188999999986644 567777655555554443
No 292
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.66 E-value=0.00018 Score=80.90 Aligned_cols=160 Identities=25% Similarity=0.352 Sum_probs=94.0
Q ss_pred ccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHH---HhCCcEEEEecccc--c----
Q 001735 732 IGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALAT---EAGANFISITGSTL--T---- 802 (1019)
Q Consensus 732 IgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~---elg~~fi~Is~seL--~---- 802 (1019)
+.|..+..+.+.+++..-. + ..-.++|++.||.|+|||+|...... +.|-+|+.+...-. .
T Consensus 26 l~g~~~~~~~l~~~lkqt~----~------~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~a 95 (408)
T KOG2228|consen 26 LFGVQDEQKHLSELLKQTI----L------HGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIA 95 (408)
T ss_pred eeehHHHHHHHHHHHHHHH----H------hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHH
Confidence 4567777777777664321 1 12336799999999999998776543 45777766544221 1
Q ss_pred ---------------hhhhhhHHHHHHHHHHHHHh-----cCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcc
Q 001735 803 ---------------SKWFGDAEKLTKALFSFASK-----LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDG 862 (1019)
Q Consensus 803 ---------------s~~~Ge~e~~I~~lF~~Ark-----~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldg 862 (1019)
.+.+|.....+..+....+. ..+.|.++||||.+++... ++++..+-.
T Consensus 96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~r------------QtllYnlfD 163 (408)
T KOG2228|consen 96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSR------------QTLLYNLFD 163 (408)
T ss_pred HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchh------------hHHHHHHHH
Confidence 01112222222222222211 1234555678999875431 233333323
Q ss_pred ccccCCCcEEEEEecCCCCC---CcHHHHhhCCCC-cccCC-CCHHHHHHHHHHHH
Q 001735 863 LRSKESQKILILGATNRPFD---LDDAVIRRLPRR-IYVDL-PDAENRMKILRIFL 913 (1019)
Q Consensus 863 l~~~~~~~VLVIaTTN~p~~---LD~aLlrRFd~~-I~V~l-Pd~eeR~eILk~~L 913 (1019)
+......++.|||.|.+.+. |...+.+||... |++++ ...++-..+++..+
T Consensus 164 isqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 164 ISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 32234568999999988765 556888899876 55544 35788888888777
No 293
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.66 E-value=0.0013 Score=77.88 Aligned_cols=172 Identities=17% Similarity=0.225 Sum_probs=88.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc-------ccchh------hhhhHHHHHHHHHHHHHh----------
Q 001735 766 KGILLFGPPGTGKTLLAKALATEAGANFISITGS-------TLTSK------WFGDAEKLTKALFSFASK---------- 822 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~s-------eL~s~------~~Ge~e~~I~~lF~~Ark---------- 822 (1019)
+-+||+||+|||||+.++.+++++|..++.-.-+ .+-.. .....-.........+.+
T Consensus 111 ~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~ 190 (634)
T KOG1970|consen 111 RILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDD 190 (634)
T ss_pred eEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccc
Confidence 4589999999999999999999999988876521 11110 111100111111111211
Q ss_pred --cCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEe-cCCCCCCcHHHHh--------hC
Q 001735 823 --LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGA-TNRPFDLDDAVIR--------RL 891 (1019)
Q Consensus 823 --~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaT-TN~p~~LD~aLlr--------RF 891 (1019)
..+.+|+|||+-..+... ..+..+.++. ++-.. ...++++|.| +..++..++..+. |.
T Consensus 191 ~~~~~~liLveDLPn~~~~d----~~~~f~evL~----~y~s~---g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri 259 (634)
T KOG1970|consen 191 LRTDKKLILVEDLPNQFYRD----DSETFREVLR----LYVSI---GRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRI 259 (634)
T ss_pred cccCceEEEeeccchhhhhh----hHHHHHHHHH----HHHhc---CCCcEEEEEeccccCCCcchhhhchhhhhhccCc
Confidence 236699999997664321 1222222332 22111 2234444433 3333443332111 44
Q ss_pred CCCcccCCCCHHHHHHHHHHHHhccCCCCc----cCHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 001735 892 PRRIYVDLPDAENRMKILRIFLAHESLESG----FQFNELANATEGYSGSDLKNLCIAAAYRP 950 (1019)
Q Consensus 892 d~~I~V~lPd~eeR~eILk~~L~~~~l~~d----vdl~~LA~~TeG~SgaDL~~L~~~Aa~~A 950 (1019)
..|.|.+-...-..+.|+.++..+..... -+...+-.++.| +++||+.++..-.+.+
T Consensus 260 -~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i~~~-s~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 260 -SNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVELICQG-SGGDIRSAINSLQLSS 320 (634)
T ss_pred -ceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHHHHHHh-cCccHHHHHhHhhhhc
Confidence 34556555666667777777765433211 122333334443 5568888877665554
No 294
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.66 E-value=0.00019 Score=88.02 Aligned_cols=171 Identities=27% Similarity=0.316 Sum_probs=93.1
Q ss_pred cccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEE-EEeccc---c-----
Q 001735 731 DIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFI-SITGST---L----- 801 (1019)
Q Consensus 731 DIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi-~Is~se---L----- 801 (1019)
.|-|.+++|+.|.-.+.-.. +.....+..++.--+|||.|.||||||.|.+.+++-+-..++ .-.+++ |
T Consensus 287 sIyG~e~VKkAilLqLfgGv--~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~ 364 (682)
T COG1241 287 SIYGHEDVKKAILLQLFGGV--KKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVV 364 (682)
T ss_pred cccCcHHHHHHHHHHhcCCC--cccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEEE
Confidence 36789999988865443221 112222333444567999999999999999999987733222 211111 1
Q ss_pred ----chhhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhh-ccccccCCCcEEEEEe
Q 001735 802 ----TSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAW-DGLRSKESQKILILGA 876 (1019)
Q Consensus 802 ----~s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~L-dgl~~~~~~~VLVIaT 876 (1019)
.+.|.-+.... -...++|++|||+|.+-..... .....+-++-+..- -|+...-+.+.-|+||
T Consensus 365 rd~~tge~~LeaGAL--------VlAD~Gv~cIDEfdKm~~~dr~----aihEaMEQQtIsIaKAGI~atLnARcsvLAA 432 (682)
T COG1241 365 RDKVTGEWVLEAGAL--------VLADGGVCCIDEFDKMNEEDRV----AIHEAMEQQTISIAKAGITATLNARCSVLAA 432 (682)
T ss_pred EccCCCeEEEeCCEE--------EEecCCEEEEEeccCCChHHHH----HHHHHHHhcEeeecccceeeecchhhhhhhh
Confidence 11111111000 1124689999999987322100 00111111111110 0222222345668889
Q ss_pred cCCCCC-------------CcHHHHhhCCCCccc-CCCCHHHHHHHHHHHHhc
Q 001735 877 TNRPFD-------------LDDAVIRRLPRRIYV-DLPDAENRMKILRIFLAH 915 (1019)
Q Consensus 877 TN~p~~-------------LD~aLlrRFd~~I~V-~lPd~eeR~eILk~~L~~ 915 (1019)
+|+..- |++.+++|||..+.+ ..|+.+.-..+..+.+..
T Consensus 433 aNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~ 485 (682)
T COG1241 433 ANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDK 485 (682)
T ss_pred hCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHH
Confidence 987652 778999999977665 457776655655555543
No 295
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.66 E-value=0.00035 Score=73.67 Aligned_cols=77 Identities=23% Similarity=0.399 Sum_probs=53.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhh-----------------------hHHHHHHH
Q 001735 762 LRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFG-----------------------DAEKLTKA 815 (1019)
Q Consensus 762 ~~p~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~G-----------------------e~e~~I~~ 815 (1019)
+.+..-++|+||||+|||+++..++... +..+++++...+...... +....+..
T Consensus 9 i~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 88 (209)
T TIGR02237 9 VERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQK 88 (209)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHHH
Confidence 5566779999999999999999988654 667888888652111110 11122444
Q ss_pred HHHHHHhcCCeEEEeccchhhhh
Q 001735 816 LFSFASKLAPVIIFVDEVDSLLG 838 (1019)
Q Consensus 816 lF~~Ark~~PsIIfIDEID~L~~ 838 (1019)
+...+....+.+|+||-+..+..
T Consensus 89 l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 89 TSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHhhcCccEEEEeCcHHHhH
Confidence 44445556789999999998864
No 296
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.65 E-value=0.00042 Score=71.21 Aligned_cols=71 Identities=30% Similarity=0.353 Sum_probs=47.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhh------h-----------------------hHH-----
Q 001735 768 ILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWF------G-----------------------DAE----- 810 (1019)
Q Consensus 768 VLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~------G-----------------------e~e----- 810 (1019)
+||+||||||||+|+..++.+. |.+++.++..+-..... | ..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 7999999999999999887754 66777776532211100 0 000
Q ss_pred HHHHHHHHHHHhcCCeEEEeccchhhhh
Q 001735 811 KLTKALFSFASKLAPVIIFVDEVDSLLG 838 (1019)
Q Consensus 811 ~~I~~lF~~Ark~~PsIIfIDEID~L~~ 838 (1019)
..+..+...+....|.+|+||++..+..
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 1134445555667899999999998764
No 297
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.62 E-value=0.00011 Score=79.33 Aligned_cols=22 Identities=45% Similarity=0.629 Sum_probs=20.2
Q ss_pred CceEEEEcCCCChHHHHHHHHH
Q 001735 765 CKGILLFGPPGTGKTLLAKALA 786 (1019)
Q Consensus 765 ~~gVLL~GPpGTGKT~LArAIA 786 (1019)
+..+||||+||+|||++|+.++
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC
Confidence 4669999999999999999997
No 298
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.58 E-value=0.00075 Score=88.76 Aligned_cols=173 Identities=19% Similarity=0.247 Sum_probs=94.5
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE---EEEecc----
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANF---ISITGS---- 799 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~f---i~Is~s---- 799 (1019)
..+++++|++..++.|..++... ....+-|-|+||+|+|||+||+++++....+| +.++..
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~------------~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~ 248 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLE------------SEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISK 248 (1153)
T ss_pred cccccccchHHHHHHHHHHHccc------------cCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecccccc
Confidence 35778999999999998876431 12335688999999999999999988874332 112110
Q ss_pred --ccch-----hh---hhhHHHHHHH-------------HHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHH
Q 001735 800 --TLTS-----KW---FGDAEKLTKA-------------LFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEF 856 (1019)
Q Consensus 800 --eL~s-----~~---~Ge~e~~I~~-------------lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~L 856 (1019)
.... .+ ..-....+.. .....-..++.+|+||+++.. ..+..+
T Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~--------------~~l~~L 314 (1153)
T PLN03210 249 SMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ--------------DVLDAL 314 (1153)
T ss_pred chhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH--------------HHHHHH
Confidence 0000 00 0000011111 111112345789999998752 112222
Q ss_pred HhhhccccccCCCcEEEEEecCCCCCCcHHHHh--hCCCCcccCCCCHHHHHHHHHHHHhccCCCCccCH----HHHHHH
Q 001735 857 MSAWDGLRSKESQKILILGATNRPFDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQF----NELANA 930 (1019)
Q Consensus 857 L~~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl----~~LA~~ 930 (1019)
....+.. +..-.||.||... .+++ ..+..+.++.|+.++..++|..+.-..... ..++ .++++.
T Consensus 315 ~~~~~~~----~~GsrIIiTTrd~-----~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~-~~~~~~l~~~iv~~ 384 (1153)
T PLN03210 315 AGQTQWF----GSGSRIIVITKDK-----HFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSP-PDGFMELASEVALR 384 (1153)
T ss_pred HhhCccC----CCCcEEEEEeCcH-----HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHH
Confidence 2222111 1123355566543 3333 356678899999999999998776433222 2222 335556
Q ss_pred hcCCC
Q 001735 931 TEGYS 935 (1019)
Q Consensus 931 TeG~S 935 (1019)
+.|..
T Consensus 385 c~GLP 389 (1153)
T PLN03210 385 AGNLP 389 (1153)
T ss_pred hCCCc
Confidence 66644
No 299
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.54 E-value=0.0023 Score=70.06 Aligned_cols=174 Identities=22% Similarity=0.231 Sum_probs=101.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC---CcEEEEeccccc-----hhhhh------------hHHHHHHHHHHHHHhc-CC
Q 001735 767 GILLFGPPGTGKTLLAKALATEAG---ANFISITGSTLT-----SKWFG------------DAEKLTKALFSFASKL-AP 825 (1019)
Q Consensus 767 gVLL~GPpGTGKT~LArAIA~elg---~~fi~Is~seL~-----s~~~G------------e~e~~I~~lF~~Ark~-~P 825 (1019)
-+.++|+.|+|||++++|++..++ ...+.++...+. ..++. ..++.-+.+.....+. .|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 478999999999999997776663 223344443331 11111 1122333344444333 46
Q ss_pred eEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCc-H---HHHhhCCCCcccCCCC
Q 001735 826 VIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLD-D---AVIRRLPRRIYVDLPD 901 (1019)
Q Consensus 826 sIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~LD-~---aLlrRFd~~I~V~lPd 901 (1019)
.++++||.+.+.... -+..+ -|...-.+.. ..-.+++||-..--..+- + .+..|++..|.+++.+
T Consensus 133 v~l~vdEah~L~~~~-----le~Lr----ll~nl~~~~~--~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~ 201 (269)
T COG3267 133 VVLMVDEAHDLNDSA-----LEALR----LLTNLEEDSS--KLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLT 201 (269)
T ss_pred eEEeehhHhhhChhH-----HHHHH----HHHhhccccc--CceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcC
Confidence 999999999985331 11111 1211111111 112466666442211111 1 3334887668888889
Q ss_pred HHHHHHHHHHHHhccC----CCCccCHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 001735 902 AENRMKILRIFLAHES----LESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQ 952 (1019)
Q Consensus 902 ~eeR~eILk~~L~~~~----l~~dvdl~~LA~~TeG~SgaDL~~L~~~Aa~~Air 952 (1019)
.++-..++++.++.-. +.++-.+..++..+.| .++-|.++|..|...|..
T Consensus 202 ~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~ 255 (269)
T COG3267 202 EAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYS 255 (269)
T ss_pred hHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHH
Confidence 9989999999988543 3344456778888888 567888888877766543
No 300
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.50 E-value=0.0011 Score=74.62 Aligned_cols=123 Identities=11% Similarity=0.084 Sum_probs=82.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC-------------cEEEEe--ccccchhhhhhHHHHHHHHHHHHHh-----cC
Q 001735 765 CKGILLFGPPGTGKTLLAKALATEAGA-------------NFISIT--GSTLTSKWFGDAEKLTKALFSFASK-----LA 824 (1019)
Q Consensus 765 ~~gVLL~GPpGTGKT~LArAIA~elg~-------------~fi~Is--~seL~s~~~Ge~e~~I~~lF~~Ark-----~~ 824 (1019)
.+..||+|+.|.||+.+|.++++.+-+ .++.++ ...+ .-..++.+...... ..
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i-------~vd~Ir~l~~~~~~~~~~~~~ 90 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDL-------SKSEFLSAINKLYFSSFVQSQ 90 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcC-------CHHHHHHHHHHhccCCcccCC
Confidence 366899999999999999999998722 223332 1111 11233333333321 24
Q ss_pred CeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHH
Q 001735 825 PVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAEN 904 (1019)
Q Consensus 825 PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~ee 904 (1019)
..|++||++|.+. ....+.|+..++.. +..+++|.+|+.+..+-+.+++|+ ..+.+.+|+.++
T Consensus 91 ~KvvII~~~e~m~------------~~a~NaLLK~LEEP----p~~t~~il~~~~~~kll~TI~SRc-~~~~f~~l~~~~ 153 (299)
T PRK07132 91 KKILIIKNIEKTS------------NSLLNALLKTIEEP----PKDTYFLLTTKNINKVLPTIVSRC-QVFNVKEPDQQK 153 (299)
T ss_pred ceEEEEecccccC------------HHHHHHHHHHhhCC----CCCeEEEEEeCChHhChHHHHhCe-EEEECCCCCHHH
Confidence 5799999998873 22345677777653 345666666667889999999999 678899898888
Q ss_pred HHHHHHH
Q 001735 905 RMKILRI 911 (1019)
Q Consensus 905 R~eILk~ 911 (1019)
..+.+..
T Consensus 154 l~~~l~~ 160 (299)
T PRK07132 154 ILAKLLS 160 (299)
T ss_pred HHHHHHH
Confidence 7776653
No 301
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.50 E-value=0.0014 Score=67.36 Aligned_cols=25 Identities=36% Similarity=0.563 Sum_probs=22.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 001735 765 CKGILLFGPPGTGKTLLAKALATEA 789 (1019)
Q Consensus 765 ~~gVLL~GPpGTGKT~LArAIA~el 789 (1019)
...|+++|+||+|||+++..++..+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 3569999999999999999999877
No 302
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.47 E-value=0.0017 Score=72.28 Aligned_cols=131 Identities=15% Similarity=0.155 Sum_probs=71.0
Q ss_pred ccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---C--CcEEEE-----ecc--
Q 001735 732 IGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA---G--ANFISI-----TGS-- 799 (1019)
Q Consensus 732 IgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~el---g--~~fi~I-----s~s-- 799 (1019)
|.|+.-+++.+-..+.-.+.++. -+.|--+=|||++||||.+.++.||+.+ | .+++.. +.+
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~-------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~ 156 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPN-------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHA 156 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCC-------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCCh
Confidence 45666666666666654443332 1233445688999999999999999986 2 233221 111
Q ss_pred ccchhhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCC
Q 001735 800 TLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNR 879 (1019)
Q Consensus 800 eL~s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~ 879 (1019)
.-+..|..+. ...+-..+...+.+|.++||+|.|-+ . .-..+.-|+............+-++|.-+|.
T Consensus 157 ~~ie~Yk~eL---~~~v~~~v~~C~rslFIFDE~DKmp~--------g-Lld~lkpfLdyyp~v~gv~frkaIFIfLSN~ 224 (344)
T KOG2170|consen 157 SKIEDYKEEL---KNRVRGTVQACQRSLFIFDEVDKLPP--------G-LLDVLKPFLDYYPQVSGVDFRKAIFIFLSNA 224 (344)
T ss_pred HHHHHHHHHH---HHHHHHHHHhcCCceEEechhhhcCH--------h-HHHHHhhhhccccccccccccceEEEEEcCC
Confidence 1122232223 33334445566779999999999821 1 1122233333221222224456677777765
Q ss_pred CC
Q 001735 880 PF 881 (1019)
Q Consensus 880 p~ 881 (1019)
-.
T Consensus 225 gg 226 (344)
T KOG2170|consen 225 GG 226 (344)
T ss_pred cc
Confidence 43
No 303
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=97.43 E-value=0.0011 Score=74.94 Aligned_cols=195 Identities=22% Similarity=0.315 Sum_probs=108.2
Q ss_pred CcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc
Q 001735 726 GVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLT 802 (1019)
Q Consensus 726 ~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~ 802 (1019)
...|+.|++.....+.+.+.... +.- +. ..+||.|.+||||-++|+|.-..+ ..||+.++|+.+-
T Consensus 200 ~~~F~~~v~~S~~mk~~v~qA~k-------~Am---lD--APLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lP 267 (511)
T COG3283 200 VSGFEQIVAVSPKMKHVVEQAQK-------LAM---LD--APLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLP 267 (511)
T ss_pred ccchHHHhhccHHHHHHHHHHHH-------hhc---cC--CCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCc
Confidence 34577777777666555443211 111 12 349999999999999999976655 6899999998874
Q ss_pred hhh-----hhhH--HHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhc-cccc------cCC
Q 001735 803 SKW-----FGDA--EKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWD-GLRS------KES 868 (1019)
Q Consensus 803 s~~-----~Ge~--e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ld-gl~~------~~~ 868 (1019)
... +|-. ..--..+|+.|.. ..+|+|||..+.+ ++...|+..+. |-.. .-.
T Consensus 268 e~~aEsElFG~apg~~gk~GffE~Ang---GTVlLDeIgEmSp------------~lQaKLLRFL~DGtFRRVGee~Ev~ 332 (511)
T COG3283 268 EDAAESELFGHAPGDEGKKGFFEQANG---GTVLLDEIGEMSP------------RLQAKLLRFLNDGTFRRVGEDHEVH 332 (511)
T ss_pred hhHhHHHHhcCCCCCCCccchhhhccC---CeEEeehhhhcCH------------HHHHHHHHHhcCCceeecCCcceEE
Confidence 331 1111 1223455666543 7899999988743 23334444442 2111 112
Q ss_pred CcEEEEEecCCCC-------CCcHHHHhhCCCCcccCCCCHHHHHH--------HHHHHHhccCCC-CccCHHHHHHHh-
Q 001735 869 QKILILGATNRPF-------DLDDAVIRRLPRRIYVDLPDAENRMK--------ILRIFLAHESLE-SGFQFNELANAT- 931 (1019)
Q Consensus 869 ~~VLVIaTTN~p~-------~LD~aLlrRFd~~I~V~lPd~eeR~e--------ILk~~L~~~~l~-~dvdl~~LA~~T- 931 (1019)
-.|.||+||..+- ..-+.+.-|. .++.+..|...+|.. ++..+..+..+. +.++-..+-..+
T Consensus 333 vdVRVIcatq~nL~~lv~~g~fReDLfyRL-NVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~ 411 (511)
T COG3283 333 VDVRVICATQVNLVELVQKGKFREDLFYRL-NVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTR 411 (511)
T ss_pred EEEEEEecccccHHHHHhcCchHHHHHHHh-heeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHH
Confidence 2588999996541 2333444466 455666666555532 333334443333 233333333222
Q ss_pred cCCC--HHHHHHHHHHHHH
Q 001735 932 EGYS--GSDLKNLCIAAAY 948 (1019)
Q Consensus 932 eG~S--gaDL~~L~~~Aa~ 948 (1019)
.+|. .++|+|++-+|+.
T Consensus 412 y~WpGNVRqL~N~iyRA~s 430 (511)
T COG3283 412 YAWPGNVRQLKNAIYRALT 430 (511)
T ss_pred cCCCccHHHHHHHHHHHHH
Confidence 2343 4788877665543
No 304
>PHA00729 NTP-binding motif containing protein
Probab=97.42 E-value=0.00027 Score=76.42 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=24.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc
Q 001735 766 KGILLFGPPGTGKTLLAKALATEAGAN 792 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~elg~~ 792 (1019)
.+|+|+|+||||||+||.+||+.++..
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~ 44 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWK 44 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 379999999999999999999998643
No 305
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.39 E-value=0.0013 Score=78.21 Aligned_cols=78 Identities=24% Similarity=0.417 Sum_probs=55.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhh------hh--------HHHHHHHHHHHHHhcC
Q 001735 762 LRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWF------GD--------AEKLTKALFSFASKLA 824 (1019)
Q Consensus 762 ~~p~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~------Ge--------~e~~I~~lF~~Ark~~ 824 (1019)
+.+...+||+|+||+|||+|+..+|... +.++++++..+-..... +. .+..+..++.......
T Consensus 77 i~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~ 156 (446)
T PRK11823 77 LVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEEK 156 (446)
T ss_pred ccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhhC
Confidence 4566679999999999999999998765 67888888765432211 00 1122445666666778
Q ss_pred CeEEEeccchhhhhc
Q 001735 825 PVIIFVDEVDSLLGA 839 (1019)
Q Consensus 825 PsIIfIDEID~L~~~ 839 (1019)
|.+|+||.|..+...
T Consensus 157 ~~lVVIDSIq~l~~~ 171 (446)
T PRK11823 157 PDLVVIDSIQTMYSP 171 (446)
T ss_pred CCEEEEechhhhccc
Confidence 999999999988653
No 306
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.38 E-value=0.01 Score=70.26 Aligned_cols=197 Identities=19% Similarity=0.200 Sum_probs=98.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchh-------h--------hh-----hHHHHHHHHHHHH
Q 001735 764 PCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSK-------W--------FG-----DAEKLTKALFSFA 820 (1019)
Q Consensus 764 p~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~s~-------~--------~G-----e~e~~I~~lF~~A 820 (1019)
+|..++|+|++|+|||+++..+|..+ |..+..+++...... + .+ .....+......+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 46779999999999999999999877 566666665443110 0 00 1122233444444
Q ss_pred HhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHhhCCCCc-----
Q 001735 821 SKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRI----- 895 (1019)
Q Consensus 821 rk~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I----- 895 (1019)
... .+|+||...++.. ...++.++.....-. .+...++|+-++...+.++ ..++|...+
T Consensus 174 ~~~--DvVIIDTAGr~~~----------d~~lm~El~~l~~~~--~pdevlLVvda~~gq~av~--~a~~F~~~l~i~gv 237 (437)
T PRK00771 174 KKA--DVIIVDTAGRHAL----------EEDLIEEMKEIKEAV--KPDEVLLVIDATIGQQAKN--QAKAFHEAVGIGGI 237 (437)
T ss_pred hcC--CEEEEECCCcccc----------hHHHHHHHHHHHHHh--cccceeEEEeccccHHHHH--HHHHHHhcCCCCEE
Confidence 333 7899998866421 122233332222211 1234455555544322222 223443322
Q ss_pred ccCCCCHHHHHH-HHHHHHh----------ccCC--CCccCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHH-HHh
Q 001735 896 YVDLPDAENRMK-ILRIFLA----------HESL--ESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQEL-LEE-ERK 960 (1019)
Q Consensus 896 ~V~lPd~eeR~e-ILk~~L~----------~~~l--~~dvdl~~LA~~TeG~SgaDL~~L~~~Aa~~Airr~-l~~-~~~ 960 (1019)
.+...|...|.- +|..... .+.+ -..++-+.++.+.-| -+|+..|++.|... +.+. .++ ..+
T Consensus 238 IlTKlD~~a~~G~~ls~~~~~~~Pi~fig~Ge~v~Dle~f~~~~~~~~ilg--mgd~~~l~e~~~~~-~~~~~~~~~~~~ 314 (437)
T PRK00771 238 IITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLG--MGDLESLLEKVEEA-LDEEEEEKDVEK 314 (437)
T ss_pred EEecccCCCcccHHHHHHHHHCcCEEEEecCCCcccCCcCCHHHHHHHHhC--CCChHHHHHHHHHh-hhHHHHHHHHHH
Confidence 222333333322 2222111 1111 133456777777655 36888888876542 2211 000 011
Q ss_pred cCCCCCCCCccCCCHHHHHHHHHhhC
Q 001735 961 RGKNDAAPVLRPLKLEDFIQSKAKVG 986 (1019)
Q Consensus 961 ~~~~~~~~~~~pLT~eDF~~Al~kv~ 986 (1019)
.. ....|++||.+-+++++
T Consensus 315 ~~-------~~~f~l~d~~~q~~~~~ 333 (437)
T PRK00771 315 MM-------KGKFTLKDMYKQLEAMN 333 (437)
T ss_pred HH-------cCCcCHHHHHHHHHHHH
Confidence 10 13579999998777665
No 307
>PF14516 AAA_35: AAA-like domain
Probab=97.37 E-value=0.0028 Score=72.45 Aligned_cols=167 Identities=18% Similarity=0.185 Sum_probs=90.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchh-------hhhh------------------------H
Q 001735 764 PCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSK-------WFGD------------------------A 809 (1019)
Q Consensus 764 p~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~s~-------~~Ge------------------------~ 809 (1019)
+..-+.|+||..+|||+|...+.+.+ |...+.+++..+... +... .
T Consensus 30 ~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~ 109 (331)
T PF14516_consen 30 PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGS 109 (331)
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCC
Confidence 44679999999999999999987766 778888877654221 0000 0
Q ss_pred HHHHHHHHHH---HHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcccccc-----CCCcEEEEEecCCCC
Q 001735 810 EKLTKALFSF---ASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSK-----ESQKILILGATNRPF 881 (1019)
Q Consensus 810 e~~I~~lF~~---Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~-----~~~~VLVIaTTN~p~ 881 (1019)
.......|+. .....|-||+|||||.++.... +...|+..++..... ...++.+|++.....
T Consensus 110 ~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~----------~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~ 179 (331)
T PF14516_consen 110 KISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQ----------IADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTED 179 (331)
T ss_pred hhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcc----------hHHHHHHHHHHHHHhcccCcccceEEEEEecCccc
Confidence 1112222322 1223688999999999975421 123344443332211 122343433332221
Q ss_pred CCcHHH-HhhC--CCCcccCCCCHHHHHHHHHHHHhccCCCCccCHHHHHHHhcCCCHHHHHHHHH
Q 001735 882 DLDDAV-IRRL--PRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCI 944 (1019)
Q Consensus 882 ~LD~aL-lrRF--d~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeG~SgaDL~~L~~ 944 (1019)
.+.... .+-| ...+.++.-+.++-..+++.+-.. ... ..++.|-..|.|.. -=+..+|.
T Consensus 180 ~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~~~-~~~~~l~~~tgGhP-~Lv~~~~~ 241 (331)
T PF14516_consen 180 YIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE--FSQ-EQLEQLMDWTGGHP-YLVQKACY 241 (331)
T ss_pred ccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc--CCH-HHHHHHHHHHCCCH-HHHHHHHH
Confidence 222111 1123 334556666888888887766332 222 23888888888854 33333333
No 308
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.37 E-value=0.0015 Score=75.70 Aligned_cols=78 Identities=24% Similarity=0.428 Sum_probs=54.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhh------h--------hHHHHHHHHHHHHHhcC
Q 001735 762 LRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWF------G--------DAEKLTKALFSFASKLA 824 (1019)
Q Consensus 762 ~~p~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~------G--------e~e~~I~~lF~~Ark~~ 824 (1019)
+.+..-+||+|+||+|||+|+..+|... +.++++++..+-..... + ..+..+..++..+....
T Consensus 79 i~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~ 158 (372)
T cd01121 79 LVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELK 158 (372)
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcC
Confidence 4566679999999999999999998765 45788887654322110 0 01223455666667778
Q ss_pred CeEEEeccchhhhhc
Q 001735 825 PVIIFVDEVDSLLGA 839 (1019)
Q Consensus 825 PsIIfIDEID~L~~~ 839 (1019)
|.+|+||+|..+...
T Consensus 159 ~~lVVIDSIq~l~~~ 173 (372)
T cd01121 159 PDLVIIDSIQTVYSS 173 (372)
T ss_pred CcEEEEcchHHhhcc
Confidence 999999999998643
No 309
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.36 E-value=0.00016 Score=82.41 Aligned_cols=163 Identities=27% Similarity=0.372 Sum_probs=80.6
Q ss_pred cccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc-----c----
Q 001735 731 DIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGST-----L---- 801 (1019)
Q Consensus 731 DIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~se-----L---- 801 (1019)
.|.|.+.+|..+.-.+....... ...+...+..-+|||.|.||||||.|.+.+++.+-..+ ++++.. |
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~~--~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s~~gLta~~ 101 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEKN--DPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSSAAGLTASV 101 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SCC--CCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGSTCCCCCEEE
T ss_pred cCcCcHHHHHHHHHHHHhccccc--cccccccccccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCcccCCcccee
Confidence 46788888776633222111110 00111134456899999999999999998876543332 222211 1
Q ss_pred -----chhhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhcc---------ccccC
Q 001735 802 -----TSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDG---------LRSKE 867 (1019)
Q Consensus 802 -----~s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldg---------l~~~~ 867 (1019)
.+.|.-+. ..+-.| ...|++|||+|.+-.. . ...|+..|+. +...-
T Consensus 102 ~~d~~~~~~~lea-----Galvla---d~GiccIDe~dk~~~~---------~---~~~l~eaMEqq~isi~kagi~~~l 161 (331)
T PF00493_consen 102 SRDPVTGEWVLEA-----GALVLA---DGGICCIDEFDKMKED---------D---RDALHEAMEQQTISIAKAGIVTTL 161 (331)
T ss_dssp CCCGGTSSECEEE------HHHHC---TTSEEEECTTTT--CH---------H---HHHHHHHHHCSCEEECTSSSEEEE
T ss_pred ccccccceeEEeC-----Cchhcc---cCceeeecccccccch---------H---HHHHHHHHHcCeeccchhhhcccc
Confidence 11121111 122222 3489999999998321 1 2223333321 11112
Q ss_pred CCcEEEEEecCCCC-------------CCcHHHHhhCCCCccc-CCCCHHHHHHHHHHHHhcc
Q 001735 868 SQKILILGATNRPF-------------DLDDAVIRRLPRRIYV-DLPDAENRMKILRIFLAHE 916 (1019)
Q Consensus 868 ~~~VLVIaTTN~p~-------------~LD~aLlrRFd~~I~V-~lPd~eeR~eILk~~L~~~ 916 (1019)
+.+.-|+|++|+.. .+++.+++|||..+.+ ..|+.+.-..+.++.+...
T Consensus 162 ~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~ 224 (331)
T PF00493_consen 162 NARCSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSH 224 (331)
T ss_dssp E---EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT
T ss_pred cchhhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEecc
Confidence 34567899998765 3777999999977664 6788777777777776643
No 310
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.34 E-value=0.0015 Score=69.87 Aligned_cols=77 Identities=27% Similarity=0.388 Sum_probs=50.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhh-----------------------hHHHHHHH
Q 001735 762 LRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFG-----------------------DAEKLTKA 815 (1019)
Q Consensus 762 ~~p~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~G-----------------------e~e~~I~~ 815 (1019)
+.+..-++|+||||+|||+++..+|.+. +.++++++...+...... +....+..
T Consensus 20 i~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 99 (225)
T PRK09361 20 FERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQIAGEDFEELLSNIIIFEPSSFEEQSEAIRK 99 (225)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhhChHhHhhCeEEEeCCCHHHHHHHHHH
Confidence 4556678999999999999999998755 778888887632111110 01111222
Q ss_pred HHHHHHhcCCeEEEeccchhhhhc
Q 001735 816 LFSFASKLAPVIIFVDEVDSLLGA 839 (1019)
Q Consensus 816 lF~~Ark~~PsIIfIDEID~L~~~ 839 (1019)
+..... ..+.+|+||.+..+...
T Consensus 100 ~~~~~~-~~~~lvVIDsi~al~~~ 122 (225)
T PRK09361 100 AEKLAK-ENVGLIVLDSATSLYRL 122 (225)
T ss_pred HHHHHH-hcccEEEEeCcHHHhHH
Confidence 222222 57899999999988643
No 311
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.34 E-value=0.0011 Score=75.26 Aligned_cols=78 Identities=27% Similarity=0.253 Sum_probs=54.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchh----------------hhhhHHHHHHHHHHHHHh
Q 001735 762 LRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSK----------------WFGDAEKLTKALFSFASK 822 (1019)
Q Consensus 762 ~~p~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~s~----------------~~Ge~e~~I~~lF~~Ark 822 (1019)
+.+...++|+||||||||+||..++.+. |.+++++++...... .....+..+..+....+.
T Consensus 52 lp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~ 131 (321)
T TIGR02012 52 LPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRS 131 (321)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhc
Confidence 5566779999999999999988876654 677777766442211 111234445555555566
Q ss_pred cCCeEEEeccchhhhhc
Q 001735 823 LAPVIIFVDEVDSLLGA 839 (1019)
Q Consensus 823 ~~PsIIfIDEID~L~~~ 839 (1019)
..+.+|+||-+..+.+.
T Consensus 132 ~~~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 132 GAVDIIVVDSVAALVPK 148 (321)
T ss_pred cCCcEEEEcchhhhccc
Confidence 78999999999998753
No 312
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.29 E-value=0.00023 Score=68.19 Aligned_cols=31 Identities=48% Similarity=0.797 Sum_probs=28.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 001735 768 ILLFGPPGTGKTLLAKALATEAGANFISITG 798 (1019)
Q Consensus 768 VLL~GPpGTGKT~LArAIA~elg~~fi~Is~ 798 (1019)
|+|.||||+|||++|+.+|..+|++++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999988876654
No 313
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.28 E-value=0.002 Score=73.99 Aligned_cols=203 Identities=15% Similarity=0.202 Sum_probs=106.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCc--EEEEeccccchhh----------------------hhhHHHHH-HHH
Q 001735 762 LRPCKGILLFGPPGTGKTLLAKALATEAGAN--FISITGSTLTSKW----------------------FGDAEKLT-KAL 816 (1019)
Q Consensus 762 ~~p~~gVLL~GPpGTGKT~LArAIA~elg~~--fi~Is~seL~s~~----------------------~Ge~e~~I-~~l 816 (1019)
..+|+||+|||..|||||+|.-..-..+-.. =..|....++... .-.+-..+ ..+
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~~~i~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~vA~eI 190 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDALPPIWRKQRVHFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPVVADEI 190 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcCCchhhhhhhhHHHHHHHHHHHHHHHHHhccccCccccccccCCccHHHHHHH
Confidence 4678999999999999999998776443110 0001111111000 00111111 111
Q ss_pred HHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCC-CCCcHHHHhhCCCCc
Q 001735 817 FSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP-FDLDDAVIRRLPRRI 895 (1019)
Q Consensus 817 F~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p-~~LD~aLlrRFd~~I 895 (1019)
-. ..++|++||+..- ..+..-+++.|+..|- ...|+++||+|+. ++|-..=+.| ..
T Consensus 191 a~-----ea~lLCFDEfQVT---------DVADAmiL~rLf~~Lf------~~GvVlvATSNR~P~dLYknGlQR---~~ 247 (467)
T KOG2383|consen 191 AE-----EAILLCFDEFQVT---------DVADAMILKRLFEHLF------KNGVVLVATSNRAPEDLYKNGLQR---EN 247 (467)
T ss_pred hh-----hceeeeechhhhh---------hHHHHHHHHHHHHHHH------hCCeEEEEeCCCChHHHhhcchhh---hh
Confidence 11 2479999999653 1222334445544441 2368899999874 4454422222 11
Q ss_pred ccCCCCHHHHHHHHHHHHhccCCCCccCHHHHHHHhc-C--CCHH-HHHHHHHHHHHHHHHHHHHHHHhcC---------
Q 001735 896 YVDLPDAENRMKILRIFLAHESLESGFQFNELANATE-G--YSGS-DLKNLCIAAAYRPVQELLEEERKRG--------- 962 (1019)
Q Consensus 896 ~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~Te-G--~Sga-DL~~L~~~Aa~~Airr~l~~~~~~~--------- 962 (1019)
.+| -..+|+..+.-..+.+.+|+...++-.+ + |.+. |+..++.+-.. +....+....
T Consensus 248 F~P------fI~~L~~rc~vi~ldS~vDYR~~~~~~~~~~yf~~~~d~~~~l~~~fk----~~~~dq~d~~~~~~l~v~G 317 (467)
T KOG2383|consen 248 FIP------FIALLEERCKVIQLDSGVDYRRKAKSAGENYYFISETDVETVLKEWFK----LLAADQNDGTRQRTLVVFG 317 (467)
T ss_pred hhh------HHHHHHHhheEEecCCccchhhccCCCCceeEecChhhHHHHHHHHHH----HHhccCCCCCCCcceeeec
Confidence 221 1366788888888888899884443222 1 3344 66666654332 1111111000
Q ss_pred ----CCC----------CCCCccCCCHHHHHHHHHhhCCCcccchhcHH
Q 001735 963 ----KND----------AAPVLRPLKLEDFIQSKAKVGPSVAYDAASMN 997 (1019)
Q Consensus 963 ----~~~----------~~~~~~pLT~eDF~~Al~kv~PS~s~~~~~m~ 997 (1019)
... ..-..+|+...|+..-.+.+..-+-++++.|.
T Consensus 318 R~l~vpk~cg~VA~ftFeeLC~rPlgAaDYL~lak~fhti~v~dIP~ls 366 (467)
T KOG2383|consen 318 RKLIVPKACGGVADFTFEELCGRPLGAADYLGLAKNFHTIIVRDIPQLS 366 (467)
T ss_pred ceEEecccCCCcccccHHHHhCCccchHHHHHHHhhcceeEeeccchhh
Confidence 000 01134788889998888877766666666654
No 314
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.28 E-value=0.00028 Score=67.37 Aligned_cols=23 Identities=52% Similarity=0.901 Sum_probs=20.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHhC
Q 001735 768 ILLFGPPGTGKTLLAKALATEAG 790 (1019)
Q Consensus 768 VLL~GPpGTGKT~LArAIA~elg 790 (1019)
|.|+||||+|||+||+.||..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998874
No 315
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.23 E-value=0.00083 Score=72.56 Aligned_cols=88 Identities=14% Similarity=0.173 Sum_probs=50.8
Q ss_pred CeEEEEcCchhhhhcccCCccHHHHHHHHHHHHhcCCCCE-EEEecccCCCCCccccccccccccccccccCCCCchhhh
Q 001735 486 PLIVYFPDSSLWLSRAVPRCNRKEFVRKVEEMFDQLSGPV-VLICGQNKNETGPKEKEKFTMILPNFGRLAKLPLPLQRL 564 (1019)
Q Consensus 486 p~Iiff~eid~~~~~~~~~~~~~~~~s~~~~~l~~l~g~v-~vI~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 564 (1019)
.-|||+|||-.|=.. +++-++. .|+ +|.+ ||||....--...-.+.||+
T Consensus 102 ~~ILFIDEIHRlnk~-----~qe~Llp----amE--d~~idiiiG~g~~ar~~~~~l~~FT------------------- 151 (233)
T PF05496_consen 102 GDILFIDEIHRLNKA-----QQEILLP----AME--DGKIDIIIGKGPNARSIRINLPPFT------------------- 151 (233)
T ss_dssp T-EEEECTCCC--HH-----HHHHHHH----HHH--CSEEEEEBSSSSS-BEEEEE----E-------------------
T ss_pred CcEEEEechhhccHH-----HHHHHHH----Hhc--cCeEEEEeccccccceeeccCCCce-------------------
Confidence 459999999976422 3334343 344 5888 45533211111111123343
Q ss_pred hcccccCCCcchHHHHhcccceEEEcCCChHHHHHHHHH
Q 001735 565 TEGLKATKRSDDNEIYNLFTNVLSIHPPKEEDLLRTFNK 603 (1019)
Q Consensus 565 vIGmTNR~d~iDeaL~rrFe~~~eI~LPdee~Rl~Il~I 603 (1019)
+||+|.|..++...|+.||.....+..=+.+.-.+|++.
T Consensus 152 ligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r 190 (233)
T PF05496_consen 152 LIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKR 190 (233)
T ss_dssp EEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHH
T ss_pred EeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHH
Confidence 789999999999999999999888887777777777753
No 316
>PHA02624 large T antigen; Provisional
Probab=97.19 E-value=0.00048 Score=83.21 Aligned_cols=38 Identities=29% Similarity=0.361 Sum_probs=32.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 001735 763 RPCKGILLFGPPGTGKTLLAKALATEAGANFISITGST 800 (1019)
Q Consensus 763 ~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~se 800 (1019)
...+.+||+||||||||+++.+|++.++...+.++++.
T Consensus 429 PKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt 466 (647)
T PHA02624 429 PKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPP 466 (647)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCc
Confidence 34467999999999999999999999977777788665
No 317
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.17 E-value=0.0055 Score=78.09 Aligned_cols=154 Identities=16% Similarity=0.218 Sum_probs=81.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchh---h-------h-----h---------------hHHHHHH
Q 001735 765 CKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSK---W-------F-----G---------------DAEKLTK 814 (1019)
Q Consensus 765 ~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s~---~-------~-----G---------------e~e~~I~ 814 (1019)
.+-++|+||+|.|||+++...+...+ ++..++...-.+. + . + .....+.
T Consensus 32 ~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (903)
T PRK04841 32 YRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFA 110 (903)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHH
Confidence 35599999999999999999988777 6666655321100 0 0 0 0011222
Q ss_pred HHHHHHHh-cCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHhhCCC
Q 001735 815 ALFSFASK-LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPR 893 (1019)
Q Consensus 815 ~lF~~Ark-~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~ 893 (1019)
.++..... ..|.+|+|||++.+-. ......+..|+.. . +....+|| ++.....+.-.-++.-+.
T Consensus 111 ~~~~~l~~~~~~~~lvlDD~h~~~~--------~~~~~~l~~l~~~---~---~~~~~lv~-~sR~~~~~~~~~l~~~~~ 175 (903)
T PRK04841 111 QLFIELADWHQPLYLVIDDYHLITN--------PEIHEAMRFFLRH---Q---PENLTLVV-LSRNLPPLGIANLRVRDQ 175 (903)
T ss_pred HHHHHHhcCCCCEEEEEeCcCcCCC--------hHHHHHHHHHHHh---C---CCCeEEEE-EeCCCCCCchHhHHhcCc
Confidence 33333222 5689999999998621 1122233333332 2 22234444 553322232111111122
Q ss_pred CcccC----CCCHHHHHHHHHHHHhccCCCCccCHHHHHHHhcCCCH
Q 001735 894 RIYVD----LPDAENRMKILRIFLAHESLESGFQFNELANATEGYSG 936 (1019)
Q Consensus 894 ~I~V~----lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeG~Sg 936 (1019)
.+.+. ..+.++-.+++...+.. .+ +..++..|...|+|+..
T Consensus 176 ~~~l~~~~l~f~~~e~~~ll~~~~~~-~~-~~~~~~~l~~~t~Gwp~ 220 (903)
T PRK04841 176 LLEIGSQQLAFDHQEAQQFFDQRLSS-PI-EAAESSRLCDDVEGWAT 220 (903)
T ss_pred ceecCHHhCCCCHHHHHHHHHhccCC-CC-CHHHHHHHHHHhCChHH
Confidence 23343 45788888888755432 22 33456778888888653
No 318
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.16 E-value=0.00051 Score=86.64 Aligned_cols=162 Identities=21% Similarity=0.252 Sum_probs=103.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhhh-----h--HHHHHHHHH---HH--HHhcCCeEEEeccch
Q 001735 767 GILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFG-----D--AEKLTKALF---SF--ASKLAPVIIFVDEVD 834 (1019)
Q Consensus 767 gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s~~~G-----e--~e~~I~~lF---~~--Ark~~PsIIfIDEID 834 (1019)
.+|++||||.|||+.+.++|.++|+.++.++.++..++... + ....+...| .. .....-.||++||+|
T Consensus 359 ~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD 438 (871)
T KOG1968|consen 359 ALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVD 438 (871)
T ss_pred HHHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccc
Confidence 37999999999999999999999999999999877654322 1 112222333 00 001112399999999
Q ss_pred hhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHh
Q 001735 835 SLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLA 914 (1019)
Q Consensus 835 ~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~ 914 (1019)
.+... . +..+..+...... ..+-||+++|.........+.+....++|+.|+...+...+..++.
T Consensus 439 ~~~~~-d--------Rg~v~~l~~l~~k------s~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~ 503 (871)
T KOG1968|consen 439 GMFGE-D--------RGGVSKLSSLCKK------SSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICK 503 (871)
T ss_pred cccch-h--------hhhHHHHHHHHHh------ccCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhc
Confidence 98752 1 2223333333321 1234777888776665544555446789999999998888888877
Q ss_pred ccCCC-CccCHHHHHHHhcCCCHHHHHHHHHHHH
Q 001735 915 HESLE-SGFQFNELANATEGYSGSDLKNLCIAAA 947 (1019)
Q Consensus 915 ~~~l~-~dvdl~~LA~~TeG~SgaDL~~L~~~Aa 947 (1019)
.+.+. .+-.++.+.+.+ ++||++.+..-.
T Consensus 504 se~~ki~~~~l~~~s~~~----~~DiR~~i~~lq 533 (871)
T KOG1968|consen 504 SEGIKISDDVLEEISKLS----GGDIRQIIMQLQ 533 (871)
T ss_pred ccceecCcHHHHHHHHhc----ccCHHHHHHHHh
Confidence 65543 233455566544 678887665433
No 319
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.16 E-value=0.0018 Score=73.66 Aligned_cols=78 Identities=26% Similarity=0.243 Sum_probs=53.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchh----------------hhhhHHHHHHHHHHHHHh
Q 001735 762 LRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSK----------------WFGDAEKLTKALFSFASK 822 (1019)
Q Consensus 762 ~~p~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~s~----------------~~Ge~e~~I~~lF~~Ark 822 (1019)
+.+.+-++|+||||+|||+||-.++.+. |..+++++...-... .....+..+..+-..++.
T Consensus 52 lp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s 131 (325)
T cd00983 52 YPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRS 131 (325)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhc
Confidence 4556678999999999999999887554 677787776432110 111234444444444566
Q ss_pred cCCeEEEeccchhhhhc
Q 001735 823 LAPVIIFVDEVDSLLGA 839 (1019)
Q Consensus 823 ~~PsIIfIDEID~L~~~ 839 (1019)
..+.+|+||-+-.+.+.
T Consensus 132 ~~~~lIVIDSvaal~~~ 148 (325)
T cd00983 132 GAVDLIVVDSVAALVPK 148 (325)
T ss_pred cCCCEEEEcchHhhccc
Confidence 77899999999998753
No 320
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.11 E-value=0.004 Score=67.57 Aligned_cols=76 Identities=24% Similarity=0.348 Sum_probs=49.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhh-------------------------------h
Q 001735 762 LRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWF-------------------------------G 807 (1019)
Q Consensus 762 ~~p~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~-------------------------------G 807 (1019)
+.+...++|.||||||||+++..++... |...++++..+-..... .
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~ 100 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNS 100 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChH
Confidence 4555679999999999999986665543 66777766432111000 0
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEeccchhhh
Q 001735 808 DAEKLTKALFSFASKLAPVIIFVDEVDSLL 837 (1019)
Q Consensus 808 e~e~~I~~lF~~Ark~~PsIIfIDEID~L~ 837 (1019)
+.+..+..+...+....|.+++||++-.+.
T Consensus 101 ~~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 101 EKRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 113344455555555679999999998865
No 321
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.10 E-value=0.0049 Score=66.89 Aligned_cols=40 Identities=28% Similarity=0.443 Sum_probs=30.8
Q ss_pred CCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 001735 759 GNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGS 799 (1019)
Q Consensus 759 ~gl~~p~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~s 799 (1019)
+| +.+...+||+||||+|||+||..++.+. |-+.++++..
T Consensus 16 GG-~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~e 58 (237)
T TIGR03877 16 GG-IPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE 58 (237)
T ss_pred CC-CcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEee
Confidence 44 5677889999999999999998876542 6677666543
No 322
>PRK08118 topology modulation protein; Reviewed
Probab=97.06 E-value=0.001 Score=68.65 Aligned_cols=32 Identities=28% Similarity=0.493 Sum_probs=29.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 001735 767 GILLFGPPGTGKTLLAKALATEAGANFISITG 798 (1019)
Q Consensus 767 gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~ 798 (1019)
.|+|.||||+|||+||+.|++.++.+++.++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 59999999999999999999999999888764
No 323
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.05 E-value=0.00059 Score=69.05 Aligned_cols=33 Identities=33% Similarity=0.542 Sum_probs=29.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001735 764 PCKGILLFGPPGTGKTLLAKALATEAGANFISI 796 (1019)
Q Consensus 764 p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~I 796 (1019)
++..|+|+|+||||||++|+++|..++++++..
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~ 35 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT 35 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 456799999999999999999999999988864
No 324
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.05 E-value=0.00097 Score=70.21 Aligned_cols=120 Identities=17% Similarity=0.152 Sum_probs=56.1
Q ss_pred EEEEcCCCChHHHHHHHH-HHHh---CCcEEEEeccccchhhhhh----HHH-------------HHHHHHHHHHhcCCe
Q 001735 768 ILLFGPPGTGKTLLAKAL-ATEA---GANFISITGSTLTSKWFGD----AEK-------------LTKALFSFASKLAPV 826 (1019)
Q Consensus 768 VLL~GPpGTGKT~LArAI-A~el---g~~fi~Is~seL~s~~~Ge----~e~-------------~I~~lF~~Ark~~Ps 826 (1019)
.|++|.||+|||+.|-.. .... |.+++. +...|.-..... ... .......-...-..+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 689999999999988666 4433 666554 443221111111 000 001111111111568
Q ss_pred EEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHhhCCCCccc
Q 001735 827 IIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYV 897 (1019)
Q Consensus 827 IIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V 897 (1019)
||+|||+..+++.+.... ......+ +++...+ ...+-||.+|..+..+|..+++..+..+.+
T Consensus 82 liviDEa~~~~~~r~~~~--~~~~~~~-~~l~~hR------h~g~diiliTQ~~~~id~~ir~lve~~~~~ 143 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKG--KKVPEII-EFLAQHR------HYGWDIILITQSPSQIDKFIRDLVEYHYHC 143 (193)
T ss_dssp EEEETTGGGTSB---T-T------HHH-HGGGGCC------CTT-EEEEEES-GGGB-HHHHCCEEEEEEE
T ss_pred EEEEECChhhcCCCcccc--ccchHHH-HHHHHhC------cCCcEEEEEeCCHHHHhHHHHHHHheEEEE
Confidence 999999999998875421 1112233 3333322 235778899999999999998865544444
No 325
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.02 E-value=0.0052 Score=65.38 Aligned_cols=75 Identities=29% Similarity=0.428 Sum_probs=48.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhh-----------------------hHHHHHHH
Q 001735 762 LRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFG-----------------------DAEKLTKA 815 (1019)
Q Consensus 762 ~~p~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~G-----------------------e~e~~I~~ 815 (1019)
+.+..-++|+|+||+|||+++..+|.+. |.++++++.......... +....+..
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (218)
T cd01394 16 VERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIAGDRPERAASSIIVFEPMDFNEQGRAIQE 95 (218)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHhHChHhhhcCEEEEeCCCHHHHHHHHHH
Confidence 4556679999999999999999998765 567777766432211100 11112223
Q ss_pred HHHHHHhcCCeEEEeccchhhh
Q 001735 816 LFSFASKLAPVIIFVDEVDSLL 837 (1019)
Q Consensus 816 lF~~Ark~~PsIIfIDEID~L~ 837 (1019)
+..... ..+.+|+||-+-.+.
T Consensus 96 ~~~~~~-~~~~lvvIDsi~~l~ 116 (218)
T cd01394 96 TETFAD-EKVDLVVVDSATALY 116 (218)
T ss_pred HHHHHh-cCCcEEEEechHHhh
Confidence 333232 248999999999885
No 326
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.02 E-value=0.0061 Score=77.06 Aligned_cols=42 Identities=7% Similarity=0.095 Sum_probs=33.9
Q ss_pred hhhcccccCCCcchHHHHhcccceEEEcCCChHHHHHHHHHHHH
Q 001735 563 RLTEGLKATKRSDDNEIYNLFTNVLSIHPPKEEDLLRTFNKQVE 606 (1019)
Q Consensus 563 ~LvIGmTNR~d~iDeaL~rrFe~~~eI~LPdee~Rl~Il~Iht~ 606 (1019)
.++|+++|-. .|++||+.||+ .|.|..+.++.-.+|.+.|+.
T Consensus 466 v~~i~TaN~~-~i~~aLl~R~~-ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 466 VMFVATSNSM-NIPAPLLDRME-VIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred eEEEEcCCCC-CCCHHHhccee-eeecCCCCHHHHHHHHHHhhh
Confidence 4556666655 39999999997 588888889999999999984
No 327
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.01 E-value=0.0047 Score=66.67 Aligned_cols=76 Identities=24% Similarity=0.335 Sum_probs=50.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhh--------------------------------
Q 001735 762 LRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWF-------------------------------- 806 (1019)
Q Consensus 762 ~~p~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~-------------------------------- 806 (1019)
+.+...++|+|+||+|||+|+.+++.+. |.++++++..+-.....
T Consensus 22 ~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~ 101 (234)
T PRK06067 22 IPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFEWN 101 (234)
T ss_pred CcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccccccC
Confidence 5666789999999999999999997653 67777776543211100
Q ss_pred -hhHHHHHHHHHHHHHhcCCeEEEeccchhhh
Q 001735 807 -GDAEKLTKALFSFASKLAPVIIFVDEVDSLL 837 (1019)
Q Consensus 807 -Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~ 837 (1019)
......+..+-.......|.+|+||++-.+.
T Consensus 102 ~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 102 STLANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred cchHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 0112333444444455688999999998764
No 328
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.00 E-value=0.0021 Score=65.51 Aligned_cols=59 Identities=27% Similarity=0.327 Sum_probs=36.8
Q ss_pred ccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---EEEEecccc
Q 001735 732 IGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN---FISITGSTL 801 (1019)
Q Consensus 732 IgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~---fi~Is~seL 801 (1019)
+.|.++..++|..++. .. . ...++.++|+|++|+|||+|++++...+..+ ++.+.+...
T Consensus 2 fvgR~~e~~~l~~~l~-~~-------~---~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-AA-------Q---SGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTG-GT-------S---S-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHH-HH-------H---cCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 4678888888887763 11 1 2344789999999999999999998777332 777766554
No 329
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=96.99 E-value=0.0018 Score=75.82 Aligned_cols=210 Identities=23% Similarity=0.235 Sum_probs=112.1
Q ss_pred cccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhhhhHH
Q 001735 731 DIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAE 810 (1019)
Q Consensus 731 DIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s~~~Ge~e 810 (1019)
+|-|.+++|+.|.-++.--..+. ...+-.++..-+|+|.|.||+.|+-|.++|.+-.-.-.+...-.+ ..+|-+.
T Consensus 343 EIyGheDVKKaLLLlLVGgvd~~--~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGS---SGVGLTA 417 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVGGVDKS--PGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGS---SGVGLTA 417 (721)
T ss_pred hhccchHHHHHHHHHhhCCCCCC--CCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCC---Cccccch
Confidence 46789999998876654322211 112223556678999999999999999999876532222211000 0011111
Q ss_pred HHHHHHHHH-------H-HhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCC
Q 001735 811 KLTKALFSF-------A-SKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFD 882 (1019)
Q Consensus 811 ~~I~~lF~~-------A-rk~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~ 882 (1019)
..++.-... | --....|.+|||+|.+....... -|+++.+- ++-..--|+...-+.+.-|+|+.|+.+-
T Consensus 418 AVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRtA-IHEVMEQQ--TISIaKAGI~TtLNAR~sILaAANPayG 494 (721)
T KOG0482|consen 418 AVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDRTA-IHEVMEQQ--TISIAKAGINTTLNARTSILAAANPAYG 494 (721)
T ss_pred hhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhhHH-HHHHHHhh--hhhhhhhccccchhhhHHhhhhcCcccc
Confidence 111000000 0 00124799999999986432211 12222110 0111112344444557778999886432
Q ss_pred -------------CcHHHHhhCCCCccc-CCCCHHHHHHHHHHHHh--ccCCC-----CccCHHH------HHHHhcCCC
Q 001735 883 -------------LDDAVIRRLPRRIYV-DLPDAENRMKILRIFLA--HESLE-----SGFQFNE------LANATEGYS 935 (1019)
Q Consensus 883 -------------LD~aLlrRFd~~I~V-~lPd~eeR~eILk~~L~--~~~l~-----~dvdl~~------LA~~TeG~S 935 (1019)
|+.+|++||+..+.+ ..|+.+.-..+.+++.- .+.-. ..++.+. +|+...-+.
T Consensus 495 RYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak~~~P~v 574 (721)
T KOG0482|consen 495 RYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAKRKNPVV 574 (721)
T ss_pred ccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHhhcCCCC
Confidence 888999999976554 67888777766665432 11111 2233332 244445566
Q ss_pred HHHHHHHHHHHHH
Q 001735 936 GSDLKNLCIAAAY 948 (1019)
Q Consensus 936 gaDL~~L~~~Aa~ 948 (1019)
+.+|..-+..|..
T Consensus 575 p~~l~dyi~~AYv 587 (721)
T KOG0482|consen 575 PEALADYITGAYV 587 (721)
T ss_pred CHHHHHHHHHHHH
Confidence 6777776655543
No 330
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.0043 Score=78.25 Aligned_cols=139 Identities=26% Similarity=0.328 Sum_probs=97.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEeccccch--hhhhhHHHHHHHHHHHHH-hcCCeEEEecc
Q 001735 766 KGILLFGPPGTGKTLLAKALATEA----------GANFISITGSTLTS--KWFGDAEKLTKALFSFAS-KLAPVIIFVDE 832 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~el----------g~~fi~Is~seL~s--~~~Ge~e~~I~~lF~~Ar-k~~PsIIfIDE 832 (1019)
++-+|.|.||+|||.++.-+|+.. +..++.++...+.. ++.|+.+..++.+..++. .....||||||
T Consensus 209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfige 288 (898)
T KOG1051|consen 209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGE 288 (898)
T ss_pred CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecc
Confidence 567899999999999999999876 24567777765543 467888999999999887 44667999999
Q ss_pred chhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCC-----CCCcHHHHhhCCCCcccCCCCHHHHHH
Q 001735 833 VDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP-----FDLDDAVIRRLPRRIYVDLPDAENRMK 907 (1019)
Q Consensus 833 ID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p-----~~LD~aLlrRFd~~I~V~lPd~eeR~e 907 (1019)
++.+.+...+.. .-...+-|-..+ ....+-+||||..- -.-+|++-+|| ..+.|+.|+.+.-..
T Consensus 289 lh~lvg~g~~~~----~~d~~nlLkp~L------~rg~l~~IGatT~e~Y~k~iekdPalErrw-~l~~v~~pS~~~~~~ 357 (898)
T KOG1051|consen 289 LHWLVGSGSNYG----AIDAANLLKPLL------ARGGLWCIGATTLETYRKCIEKDPALERRW-QLVLVPIPSVENLSL 357 (898)
T ss_pred eeeeecCCCcch----HHHHHHhhHHHH------hcCCeEEEecccHHHHHHHHhhCcchhhCc-ceeEeccCcccchhh
Confidence 999987654411 111222222222 12238899887522 23678999999 467888998877666
Q ss_pred HHHHHHhc
Q 001735 908 ILRIFLAH 915 (1019)
Q Consensus 908 ILk~~L~~ 915 (1019)
||...-..
T Consensus 358 iL~~l~~~ 365 (898)
T KOG1051|consen 358 ILPGLSER 365 (898)
T ss_pred hhhhhhhh
Confidence 77655444
No 331
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.97 E-value=0.0022 Score=82.70 Aligned_cols=134 Identities=25% Similarity=0.323 Sum_probs=83.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch--hhhh-----h--HH-HHHHHHHHHHHhcCCeEEEeccchh
Q 001735 766 KGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS--KWFG-----D--AE-KLTKALFSFASKLAPVIIFVDEVDS 835 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s--~~~G-----e--~e-~~I~~lF~~Ark~~PsIIfIDEID~ 835 (1019)
+++||.|.||+|||.|+.|+|++.|-.++.|+.++-.. +.+| + .+ .....-|-.|-+. ..-|++||+..
T Consensus 1544 kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~-G~WVlLDEiNL 1622 (4600)
T COG5271 1544 KPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRD-GGWVLLDEINL 1622 (4600)
T ss_pred CceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhc-CCEEEeehhhh
Confidence 67999999999999999999999999999999876421 1111 1 11 1122334444443 45677999965
Q ss_pred hhhccCCCchhHHHHHHHHHHHhhhccc---cc-------cCCCcEEEEEecCCCCC------CcHHHHhhCCCCcccCC
Q 001735 836 LLGARGGAFEHEATRRMRNEFMSAWDGL---RS-------KESQKILILGATNRPFD------LDDAVIRRLPRRIYVDL 899 (1019)
Q Consensus 836 L~~~r~~~~~~e~~~ril~~LL~~Ldgl---~~-------~~~~~VLVIaTTN~p~~------LD~aLlrRFd~~I~V~l 899 (1019)
-. ..++.-|-..||.. .- .-..+..|.||-|+.+. |+..++.|| .++.+..
T Consensus 1623 aS------------QSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRF-svV~~d~ 1689 (4600)
T COG5271 1623 AS------------QSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRF-SVVKMDG 1689 (4600)
T ss_pred hH------------HHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhh-heEEecc
Confidence 31 22333333333311 10 12235677777776543 999999999 4666766
Q ss_pred CCHHHHHHHHHHHH
Q 001735 900 PDAENRMKILRIFL 913 (1019)
Q Consensus 900 Pd~eeR~eILk~~L 913 (1019)
.+.+....|.....
T Consensus 1690 lt~dDi~~Ia~~~y 1703 (4600)
T COG5271 1690 LTTDDITHIANKMY 1703 (4600)
T ss_pred cccchHHHHHHhhC
Confidence 66666666665544
No 332
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.96 E-value=0.002 Score=71.46 Aligned_cols=94 Identities=21% Similarity=0.262 Sum_probs=61.2
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEe-ccccc
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAG---ANFISIT-GSTLT 802 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg---~~fi~Is-~seL~ 802 (1019)
.+++++|-.....+.|++++.. +...++|.||+|+|||++++++..... ..++.+. ..++.
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~~---------------~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~ 121 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLEK---------------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQ 121 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHhc---------------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceec
Confidence 4678888777777777776522 123489999999999999999987763 3344442 22221
Q ss_pred hh-----hh-hhHHHHHHHHHHHHHhcCCeEEEeccchh
Q 001735 803 SK-----WF-GDAEKLTKALFSFASKLAPVIIFVDEVDS 835 (1019)
Q Consensus 803 s~-----~~-Ge~e~~I~~lF~~Ark~~PsIIfIDEID~ 835 (1019)
-. .. .+.......+...+.+..|.+|+|+|+..
T Consensus 122 ~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~ 160 (264)
T cd01129 122 IPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIRD 160 (264)
T ss_pred CCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCCC
Confidence 10 01 11112345556667788999999999954
No 333
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.94 E-value=0.03 Score=65.92 Aligned_cols=36 Identities=31% Similarity=0.423 Sum_probs=27.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccc
Q 001735 765 CKGILLFGPPGTGKTLLAKALATEA----GANFISITGST 800 (1019)
Q Consensus 765 ~~gVLL~GPpGTGKT~LArAIA~el----g~~fi~Is~se 800 (1019)
+..++|.||+|+|||+++..+|... |..+..+++..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt 262 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDN 262 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccc
Confidence 3568899999999999999999754 44555555443
No 334
>PRK07261 topology modulation protein; Provisional
Probab=96.93 E-value=0.0017 Score=67.16 Aligned_cols=33 Identities=24% Similarity=0.423 Sum_probs=29.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 001735 767 GILLFGPPGTGKTLLAKALATEAGANFISITGS 799 (1019)
Q Consensus 767 gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~s 799 (1019)
.|+|.|+||+|||+||+.|+..++.+++.++.-
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~ 34 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTL 34 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCE
Confidence 489999999999999999999999998877543
No 335
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.90 E-value=0.069 Score=63.17 Aligned_cols=199 Identities=15% Similarity=0.128 Sum_probs=98.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchh---------------hh-----hhHHHHHHHHHHHH
Q 001735 764 PCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSK---------------WF-----GDAEKLTKALFSFA 820 (1019)
Q Consensus 764 p~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~s~---------------~~-----Ge~e~~I~~lF~~A 820 (1019)
++.-|+|.|++|+|||+++..+|..+ |..+.-+++...... +. ..........+..+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 45679999999999999999999877 666666666432100 00 01122233445555
Q ss_pred HhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHhhCCCC-----c
Q 001735 821 SKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRR-----I 895 (1019)
Q Consensus 821 rk~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~-----I 895 (1019)
+...-.+||||=..++- .....+.++....+.. .+...++|+-++.-...+ ...+.|... +
T Consensus 179 ~~~~~DvViIDTaGr~~----------~d~~lm~El~~i~~~~--~p~e~lLVlda~~Gq~a~--~~a~~F~~~~~~~g~ 244 (429)
T TIGR01425 179 KKENFDIIIVDTSGRHK----------QEDSLFEEMLQVAEAI--QPDNIIFVMDGSIGQAAE--AQAKAFKDSVDVGSV 244 (429)
T ss_pred HhCCCCEEEEECCCCCc----------chHHHHHHHHHHhhhc--CCcEEEEEeccccChhHH--HHHHHHHhccCCcEE
Confidence 55556888888765431 1122333443333322 223345555444322222 222344322 2
Q ss_pred ccCCCCHHHHHH-HHHHH-Hhc---------cCC--CCccCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHH-HHh
Q 001735 896 YVDLPDAENRMK-ILRIF-LAH---------ESL--ESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQEL-LEE-ERK 960 (1019)
Q Consensus 896 ~V~lPd~eeR~e-ILk~~-L~~---------~~l--~~dvdl~~LA~~TeG~SgaDL~~L~~~Aa~~Airr~-l~~-~~~ 960 (1019)
.+...|...|.- +|... ..+ +.+ ...++-..++.+.-| -+|+..|++.|... +.+- .++ ..+
T Consensus 245 IlTKlD~~argG~aLs~~~~t~~PI~fig~Ge~v~Dle~f~p~~~~~rilg--mgDi~~L~ek~~~~-~~~~~~~~~~~k 321 (429)
T TIGR01425 245 IITKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEIFKTQPFISKLLG--MGDIEGLIDKVQDL-KLDDNEKALIEK 321 (429)
T ss_pred EEECccCCCCccHHhhhHHHHCCCeEEEcCCCChhhcCcCChHHHHHHHhc--CCCcHHHHHHHHHh-hhHHHHHHHHHH
Confidence 233344444431 22211 111 111 123445566666654 35888888876532 2221 000 000
Q ss_pred cCCCCCCCCccCCCHHHHHHHHHhhC
Q 001735 961 RGKNDAAPVLRPLKLEDFIQSKAKVG 986 (1019)
Q Consensus 961 ~~~~~~~~~~~pLT~eDF~~Al~kv~ 986 (1019)
.. ....|++||.+-++.++
T Consensus 322 ~~-------~~~f~l~D~~~q~~~i~ 340 (429)
T TIGR01425 322 LK-------EGTFTLRDMYEQFQNLL 340 (429)
T ss_pred HH-------hCCCCHHHHHHHHHHHH
Confidence 00 13479999988877665
No 336
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.88 E-value=0.0081 Score=62.38 Aligned_cols=69 Identities=19% Similarity=0.231 Sum_probs=47.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhhhhHHH--------------------HHHHHHHHHHhcCCe
Q 001735 767 GILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEK--------------------LTKALFSFASKLAPV 826 (1019)
Q Consensus 767 gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s~~~Ge~e~--------------------~I~~lF~~Ark~~Ps 826 (1019)
.+|+.|+||+|||++|..++..++.+++++........ +..+ .+..++... ...+.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~---e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~ 78 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDD---EMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGR 78 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChH---HHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCC
Confidence 48999999999999999999998888777766543221 1111 233333221 23467
Q ss_pred EEEeccchhhhhc
Q 001735 827 IIFVDEVDSLLGA 839 (1019)
Q Consensus 827 IIfIDEID~L~~~ 839 (1019)
+|+||-+..|...
T Consensus 79 ~VlID~Lt~~~~n 91 (170)
T PRK05800 79 CVLVDCLTTWVTN 91 (170)
T ss_pred EEEehhHHHHHHH
Confidence 8999999998754
No 337
>PRK09354 recA recombinase A; Provisional
Probab=96.87 E-value=0.0058 Score=70.28 Aligned_cols=77 Identities=25% Similarity=0.247 Sum_probs=52.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchh----------------hhhhHHHHHHHHHHHHHh
Q 001735 762 LRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSK----------------WFGDAEKLTKALFSFASK 822 (1019)
Q Consensus 762 ~~p~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~s~----------------~~Ge~e~~I~~lF~~Ark 822 (1019)
+....-++|+||+|||||+|+-.++.+. |...++++...-... .....+..+..+-...+.
T Consensus 57 ip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s 136 (349)
T PRK09354 57 LPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRS 136 (349)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhc
Confidence 4555678999999999999999876544 777777776542110 011233344333344556
Q ss_pred cCCeEEEeccchhhhh
Q 001735 823 LAPVIIFVDEVDSLLG 838 (1019)
Q Consensus 823 ~~PsIIfIDEID~L~~ 838 (1019)
..+.+|+||-+-.+.+
T Consensus 137 ~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 137 GAVDLIVVDSVAALVP 152 (349)
T ss_pred CCCCEEEEeChhhhcc
Confidence 6789999999999875
No 338
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.86 E-value=0.0074 Score=64.30 Aligned_cols=39 Identities=33% Similarity=0.441 Sum_probs=30.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---C------CcEEEEeccc
Q 001735 762 LRPCKGILLFGPPGTGKTLLAKALATEA---G------ANFISITGST 800 (1019)
Q Consensus 762 ~~p~~gVLL~GPpGTGKT~LArAIA~el---g------~~fi~Is~se 800 (1019)
+.+..-+.|+||||+|||+|+..+|... + ..+++++...
T Consensus 16 ~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 16 IPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 4566679999999999999999998664 3 5677777654
No 339
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.86 E-value=0.01 Score=63.60 Aligned_cols=96 Identities=23% Similarity=0.369 Sum_probs=61.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccccchh--------------h------------------
Q 001735 762 LRPCKGILLFGPPGTGKTLLAKALATEA----GANFISITGSTLTSK--------------W------------------ 805 (1019)
Q Consensus 762 ~~p~~gVLL~GPpGTGKT~LArAIA~el----g~~fi~Is~seL~s~--------------~------------------ 805 (1019)
+.+...+||.||||+|||.|+..++.+. |-+++.++..+-... +
T Consensus 16 ip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~~ 95 (226)
T PF06745_consen 16 IPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIGW 95 (226)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST-
T ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccccc
Confidence 5667789999999999999999876543 778887765332100 0
Q ss_pred -hhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhc
Q 001735 806 -FGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWD 861 (1019)
Q Consensus 806 -~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ld 861 (1019)
.......+..+........+.+++||.+..+. ... .....+..+..|...+.
T Consensus 96 ~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~-~~~---~~~~~r~~l~~l~~~l~ 148 (226)
T PF06745_consen 96 SPNDLEELLSKIREAIEELKPDRVVIDSLSALL-LYD---DPEELRRFLRALIKFLK 148 (226)
T ss_dssp TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHT-TSS---SGGGHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEECHHHHh-hcC---CHHHHHHHHHHHHHHHH
Confidence 01234455666666677788999999999982 221 23334555666666653
No 340
>PRK10536 hypothetical protein; Provisional
Probab=96.83 E-value=0.0059 Score=67.40 Aligned_cols=22 Identities=41% Similarity=0.496 Sum_probs=20.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 001735 767 GILLFGPPGTGKTLLAKALATE 788 (1019)
Q Consensus 767 gVLL~GPpGTGKT~LArAIA~e 788 (1019)
-+++.||+|||||+||.|+|.+
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999985
No 341
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.82 E-value=0.0027 Score=62.43 Aligned_cols=28 Identities=61% Similarity=0.924 Sum_probs=24.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001735 768 ILLFGPPGTGKTLLAKALATEAGANFIS 795 (1019)
Q Consensus 768 VLL~GPpGTGKT~LArAIA~elg~~fi~ 795 (1019)
|++.||||+|||++|+.++..++..++.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~i~ 29 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVVIS 29 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEe
Confidence 7899999999999999999999944433
No 342
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.82 E-value=0.008 Score=64.42 Aligned_cols=114 Identities=18% Similarity=0.213 Sum_probs=63.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccccch-hhh-------------------------
Q 001735 762 LRPCKGILLFGPPGTGKTLLAKALATEA---------GANFISITGSTLTS-KWF------------------------- 806 (1019)
Q Consensus 762 ~~p~~gVLL~GPpGTGKT~LArAIA~el---------g~~fi~Is~seL~s-~~~------------------------- 806 (1019)
+.+..-+.|+||||+|||+|+..++... +..+++++...-.. ...
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 16 IETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecCC
Confidence 5556678999999999999999998553 25677777654211 000
Q ss_pred -hhHHHHHHHHHHHHHhc-CCeEEEeccchhhhhcc-CCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEec
Q 001735 807 -GDAEKLTKALFSFASKL-APVIIFVDEVDSLLGAR-GGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGAT 877 (1019)
Q Consensus 807 -Ge~e~~I~~lF~~Ark~-~PsIIfIDEID~L~~~r-~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTT 877 (1019)
.+....+..+-...... .+.+|+||-+..+.... ..........+.+..++..|..+... ..+.||.|.
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~--~~~avl~tn 167 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADE--FNVAVVITN 167 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHH--hCCEEEEec
Confidence 01112222232333445 78999999999875321 11111122223455555555544322 245555554
No 343
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.80 E-value=0.00069 Score=70.18 Aligned_cols=23 Identities=48% Similarity=0.775 Sum_probs=20.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001735 767 GILLFGPPGTGKTLLAKALATEA 789 (1019)
Q Consensus 767 gVLL~GPpGTGKT~LArAIA~el 789 (1019)
+|+|+|+||+|||+|++.++..+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 48999999999999999999888
No 344
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=96.79 E-value=0.021 Score=69.05 Aligned_cols=175 Identities=19% Similarity=0.169 Sum_probs=95.5
Q ss_pred cccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE------------
Q 001735 729 FDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISI------------ 796 (1019)
Q Consensus 729 fdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~I------------ 796 (1019)
|..|-|.+.+|.-|.-.+.--..+... .+-.++.-.+|+|.|.|||||+-+.++++.-+-..++.-
T Consensus 344 ~PsIyGhe~VK~GilL~LfGGv~K~a~--eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTaa 421 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSLFGGVHKSAG--EGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTAA 421 (764)
T ss_pred CccccchHHHHhhHHHHHhCCccccCC--CCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceEE
Confidence 335778888888775544332222111 111134456799999999999999999987663222211
Q ss_pred -eccccchhhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhh-ccccccCCCcEEEE
Q 001735 797 -TGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAW-DGLRSKESQKILIL 874 (1019)
Q Consensus 797 -s~seL~s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~L-dgl~~~~~~~VLVI 874 (1019)
.-.+..++|.-+.... --....|..|||+|.+-.+.+. .....+-++-+..- -|+...-+.+--||
T Consensus 422 VvkD~esgdf~iEAGAL--------mLADnGICCIDEFDKMd~~dqv----AihEAMEQQtISIaKAGv~aTLnARtSIl 489 (764)
T KOG0480|consen 422 VVKDEESGDFTIEAGAL--------MLADNGICCIDEFDKMDVKDQV----AIHEAMEQQTISIAKAGVVATLNARTSIL 489 (764)
T ss_pred EEecCCCCceeeecCcE--------EEccCceEEechhcccChHhHH----HHHHHHHhheehheecceEEeecchhhhh
Confidence 1111111221111000 0113579999999998432111 11111111111111 12211223355588
Q ss_pred EecCCCCC-------------CcHHHHhhCCCCc-ccCCCCHHHHHHHHHHHHhccC
Q 001735 875 GATNRPFD-------------LDDAVIRRLPRRI-YVDLPDAENRMKILRIFLAHES 917 (1019)
Q Consensus 875 aTTN~p~~-------------LD~aLlrRFd~~I-~V~lPd~eeR~eILk~~L~~~~ 917 (1019)
|++|+..- ++.++++|||..+ .++-|++..-..|-++++..+.
T Consensus 490 AAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~ 546 (764)
T KOG0480|consen 490 AAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHR 546 (764)
T ss_pred hhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhc
Confidence 88886532 7789999998654 4577888888888887776533
No 345
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.77 E-value=0.0028 Score=67.07 Aligned_cols=98 Identities=23% Similarity=0.337 Sum_probs=51.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhhH----HHHHHHHHHHHH---------hcCCeEEE
Q 001735 766 KGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGDA----EKLTKALFSFAS---------KLAPVIIF 829 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~Ge~----e~~I~~lF~~Ar---------k~~PsIIf 829 (1019)
+.++|.||||||||+++++++..+ |..++.+.+..-......+. ...+..++.... .....+|+
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vli 98 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLI 98 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEE
Confidence 458899999999999999987655 66777766543221111110 011121111111 12247999
Q ss_pred eccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCC
Q 001735 830 VDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNR 879 (1019)
Q Consensus 830 IDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~ 879 (1019)
|||+..+. ...+..++..... .+.+++++|-.+.
T Consensus 99 VDEasmv~------------~~~~~~ll~~~~~----~~~klilvGD~~Q 132 (196)
T PF13604_consen 99 VDEASMVD------------SRQLARLLRLAKK----SGAKLILVGDPNQ 132 (196)
T ss_dssp ESSGGG-B------------HHHHHHHHHHS-T-----T-EEEEEE-TTS
T ss_pred EecccccC------------HHHHHHHHHHHHh----cCCEEEEECCcch
Confidence 99997763 1223344443322 3457888887664
No 346
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.76 E-value=0.023 Score=68.04 Aligned_cols=90 Identities=13% Similarity=0.175 Sum_probs=59.3
Q ss_pred CCeEEEEcCchhhhhcccCCccHHHHHHHHHHHHhcCCCCEEEEecccCCCCCccccccccccccccccccCCCCchhhh
Q 001735 485 QPLIVYFPDSSLWLSRAVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPNFGRLAKLPLPLQRL 564 (1019)
Q Consensus 485 ~p~Iiff~eid~~~~~~~~~~~~~~~~s~~~~~l~~l~g~v~vI~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 564 (1019)
..-|||+||++.+-. .....|+..|+..++.+++|++++.
T Consensus 117 ~~kVvIIDE~h~Lt~---------~a~~~LLk~LE~p~~~vv~Ilattn------------------------------- 156 (472)
T PRK14962 117 KYKVYIIDEVHMLTK---------EAFNALLKTLEEPPSHVVFVLATTN------------------------------- 156 (472)
T ss_pred CeEEEEEEChHHhHH---------HHHHHHHHHHHhCCCcEEEEEEeCC-------------------------------
Confidence 346999999998752 2234566777888888888755442
Q ss_pred hcccccCCCcchHHHHhcccceEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001735 565 TEGLKATKRSDDNEIYNLFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHK 623 (1019)
Q Consensus 565 vIGmTNR~d~iDeaL~rrFe~~~eI~LPdee~Rl~Il~Iht~k~~~~~~~~~~v~~l~~ 623 (1019)
+..+.++|..|+. .++|.+|+.+....+++.-..+ ......+.-++.|+.
T Consensus 157 -------~~kl~~~L~SR~~-vv~f~~l~~~el~~~L~~i~~~-egi~i~~eal~~Ia~ 206 (472)
T PRK14962 157 -------LEKVPPTIISRCQ-VIEFRNISDELIIKRLQEVAEA-EGIEIDREALSFIAK 206 (472)
T ss_pred -------hHhhhHHHhcCcE-EEEECCccHHHHHHHHHHHHHH-cCCCCCHHHHHHHHH
Confidence 3447788998985 7999999998877777654322 122333333545544
No 347
>COG1485 Predicted ATPase [General function prediction only]
Probab=96.76 E-value=0.011 Score=67.45 Aligned_cols=28 Identities=32% Similarity=0.604 Sum_probs=25.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhC
Q 001735 763 RPCKGILLFGPPGTGKTLLAKALATEAG 790 (1019)
Q Consensus 763 ~p~~gVLL~GPpGTGKT~LArAIA~elg 790 (1019)
.+++|++|||+-|.|||+|.-..-..+-
T Consensus 63 ~~~~GlYl~GgVGrGKT~LMD~Fy~~lp 90 (367)
T COG1485 63 GPVRGLYLWGGVGRGKTMLMDLFYESLP 90 (367)
T ss_pred CCCceEEEECCCCccHHHHHHHHHhhCC
Confidence 4779999999999999999999887763
No 348
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.75 E-value=0.018 Score=67.62 Aligned_cols=121 Identities=20% Similarity=0.179 Sum_probs=69.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchh
Q 001735 767 GILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEH 846 (1019)
Q Consensus 767 gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~ 846 (1019)
.++|+||.+||||++++.+.....-.++.++..++......- ......+..++......||||||+.+-+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v~~-------- 108 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNVPD-------- 108 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCchh--------
Confidence 799999999999999988887775557777766655433221 1122222223232558999999988621
Q ss_pred HHHHHHHHHHHhhhccccccCCCcEEEEEecCCC--CCCcHHHHhhCCCCcccCCCCHHHHHH
Q 001735 847 EATRRMRNEFMSAWDGLRSKESQKILILGATNRP--FDLDDAVIRRLPRRIYVDLPDAENRMK 907 (1019)
Q Consensus 847 e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p--~~LD~aLlrRFd~~I~V~lPd~eeR~e 907 (1019)
..+.+..+. |.. ...+++.+++... ..+.+.+..|. ..+.+.+.+..+...
T Consensus 109 --W~~~lk~l~---d~~----~~~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 109 --WERALKYLY---DRG----NLDVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred --HHHHHHHHH---ccc----cceEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHh
Confidence 122222332 221 1134554444322 22344555575 566677777777754
No 349
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.73 E-value=0.014 Score=64.41 Aligned_cols=38 Identities=24% Similarity=0.345 Sum_probs=30.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 001735 762 LRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGS 799 (1019)
Q Consensus 762 ~~p~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~s 799 (1019)
+.+...+||+||||||||+++..+|.+. |-++++++..
T Consensus 33 ip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 33 IPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred eECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 5666779999999999999999987653 5666666644
No 350
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.73 E-value=0.0064 Score=70.75 Aligned_cols=73 Identities=22% Similarity=0.364 Sum_probs=44.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC-----c-EEEEeccc---------------cchhhhhhHHHHHH---HHHHHHH
Q 001735 766 KGILLFGPPGTGKTLLAKALATEAGA-----N-FISITGST---------------LTSKWFGDAEKLTK---ALFSFAS 821 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~elg~-----~-fi~Is~se---------------L~s~~~Ge~e~~I~---~lF~~Ar 821 (1019)
...+|+||||+|||+|++.|++.... . ++.+.... +.+.+-......++ .++..|+
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae 249 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAK 249 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 34899999999999999999987733 2 22222211 12222222332222 3344443
Q ss_pred h----cCCeEEEeccchhhhh
Q 001735 822 K----LAPVIIFVDEVDSLLG 838 (1019)
Q Consensus 822 k----~~PsIIfIDEID~L~~ 838 (1019)
. ....+||||||.++..
T Consensus 250 ~~~e~G~dVlL~iDsItR~ar 270 (416)
T PRK09376 250 RLVEHGKDVVILLDSITRLAR 270 (416)
T ss_pred HHHHcCCCEEEEEEChHHHHH
Confidence 3 2467999999999964
No 351
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.73 E-value=0.012 Score=70.13 Aligned_cols=77 Identities=21% Similarity=0.296 Sum_probs=53.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhh------hh--------HHHHHHHHHHHHHhcC
Q 001735 762 LRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWF------GD--------AEKLTKALFSFASKLA 824 (1019)
Q Consensus 762 ~~p~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~------Ge--------~e~~I~~lF~~Ark~~ 824 (1019)
+.+..-+||+|+||+|||+|+..+|... +.++++++..+-..... +- .+..+..+...+....
T Consensus 91 i~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~~ 170 (454)
T TIGR00416 91 IVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEEN 170 (454)
T ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhcC
Confidence 5566779999999999999999997765 45788887654322110 00 0112345555566778
Q ss_pred CeEEEeccchhhhh
Q 001735 825 PVIIFVDEVDSLLG 838 (1019)
Q Consensus 825 PsIIfIDEID~L~~ 838 (1019)
|.+|+||.|..+..
T Consensus 171 ~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 171 PQACVIDSIQTLYS 184 (454)
T ss_pred CcEEEEecchhhcc
Confidence 99999999999864
No 352
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.72 E-value=0.017 Score=66.44 Aligned_cols=59 Identities=19% Similarity=0.202 Sum_probs=44.2
Q ss_pred ccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 001735 732 IGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTL 801 (1019)
Q Consensus 732 IgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL 801 (1019)
+.+.+.++..|..++-. ... +-|..|.|||-.|||||++.+++.++++.+.+.+++-+.
T Consensus 8 v~~Re~qi~~L~~Llg~---------~~~--~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ec 66 (438)
T KOG2543|consen 8 VPCRESQIRRLKSLLGN---------NSC--TIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVEC 66 (438)
T ss_pred ccchHHHHHHHHHHhCC---------CCc--ccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHh
Confidence 44567777777776522 111 234567999999999999999999999999988887543
No 353
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=96.72 E-value=0.0027 Score=76.64 Aligned_cols=169 Identities=21% Similarity=0.293 Sum_probs=94.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--CCcEEEEeccccchhhhhhH-HHHHHHHHHHHHhc---------CCeEEEeccc
Q 001735 766 KGILLFGPPGTGKTLLAKALATEA--GANFISITGSTLTSKWFGDA-EKLTKALFSFASKL---------APVIIFVDEV 833 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~el--g~~fi~Is~seL~s~~~Ge~-e~~I~~lF~~Ark~---------~PsIIfIDEI 833 (1019)
-.|||.|.|||||-.|+++|-... ..||+.++|..+.....++. -.++...|.-|+.. .-..+|+|||
T Consensus 337 ~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlFldeI 416 (606)
T COG3284 337 LPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLFLDEI 416 (606)
T ss_pred CCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCCccHHHHh
Confidence 459999999999999999998766 56999999987644332211 11222233333222 2369999999
Q ss_pred hhhhhccCCCchhHHHHHHHHHHHhhh--------ccccccCCCcEEEEEecCCCC-------CCcHHHHhhCCCCcccC
Q 001735 834 DSLLGARGGAFEHEATRRMRNEFMSAW--------DGLRSKESQKILILGATNRPF-------DLDDAVIRRLPRRIYVD 898 (1019)
Q Consensus 834 D~L~~~r~~~~~~e~~~ril~~LL~~L--------dgl~~~~~~~VLVIaTTN~p~-------~LD~aLlrRFd~~I~V~ 898 (1019)
..|.- .. ...||..| .+-. ..-.|-||+||+++- ..-+.+.-|. ..+.+.
T Consensus 417 gd~p~--------~~----Qs~LLrVl~e~~v~p~g~~~--~~vdirvi~ath~dl~~lv~~g~fredLyyrL-~~~~i~ 481 (606)
T COG3284 417 GDMPL--------AL----QSRLLRVLQEGVVTPLGGTR--IKVDIRVIAATHRDLAQLVEQGRFREDLYYRL-NAFVIT 481 (606)
T ss_pred hhchH--------HH----HHHHHHHHhhCceeccCCcc--eeEEEEEEeccCcCHHHHHHcCCchHHHHHHh-cCeeec
Confidence 88721 11 22233322 2221 233577999998741 1223333344 344566
Q ss_pred CCCHHHHH---HHHHHHHhccCCC-CccCHHHHHHHh-cCC--CHHHHHHHHHHHHHH
Q 001735 899 LPDAENRM---KILRIFLAHESLE-SGFQFNELANAT-EGY--SGSDLKNLCIAAAYR 949 (1019)
Q Consensus 899 lPd~eeR~---eILk~~L~~~~l~-~dvdl~~LA~~T-eG~--SgaDL~~L~~~Aa~~ 949 (1019)
+|...+|. ..|..++..+.-. -.++-+.++... ..+ +.++|.+++..++..
T Consensus 482 lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l 539 (606)
T COG3284 482 LPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVIERLAAL 539 (606)
T ss_pred cCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHc
Confidence 67665554 4455555443321 122222232221 223 558999998887654
No 354
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.72 E-value=0.0018 Score=78.15 Aligned_cols=64 Identities=17% Similarity=0.233 Sum_probs=47.7
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEec
Q 001735 727 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA-GANFISITG 798 (1019)
Q Consensus 727 vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~el-g~~fi~Is~ 798 (1019)
.-|+|+.|++++++.+.+++...... . -.....++|.||||+|||+||++||+.+ .++++.+..
T Consensus 73 ~fF~d~yGlee~ieriv~~l~~Aa~g------l--~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 73 PAFEEFYGMEEAIEQIVSYFRHAAQG------L--EEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred cchhcccCcHHHHHHHHHHHHHHHHh------c--CCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 45889999999999998877332211 1 2234578999999999999999999987 456666543
No 355
>PHA02774 E1; Provisional
Probab=96.69 E-value=0.022 Score=69.04 Aligned_cols=34 Identities=26% Similarity=0.568 Sum_probs=27.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEE-Eec
Q 001735 765 CKGILLFGPPGTGKTLLAKALATEAGANFIS-ITG 798 (1019)
Q Consensus 765 ~~gVLL~GPpGTGKT~LArAIA~elg~~fi~-Is~ 798 (1019)
.+.++|+||||||||++|.+|++.++..++. ++.
T Consensus 434 knciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 434 KNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 3579999999999999999999998654433 553
No 356
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.69 E-value=0.012 Score=64.53 Aligned_cols=37 Identities=30% Similarity=0.356 Sum_probs=29.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEec
Q 001735 762 LRPCKGILLFGPPGTGKTLLAKALATEA----GANFISITG 798 (1019)
Q Consensus 762 ~~p~~gVLL~GPpGTGKT~LArAIA~el----g~~fi~Is~ 798 (1019)
+.+..-++|.||||+|||+++..+|... |.+++.+++
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 4555679999999999999999887664 667777765
No 357
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.69 E-value=0.011 Score=68.54 Aligned_cols=111 Identities=14% Similarity=0.221 Sum_probs=70.7
Q ss_pred HHHHHHHHHhh-cCCeEEEEcCchhhhhcccCCccHHHHHHHHHHHHhcCCC-CEEEEecccCCCCCccccccccccccc
Q 001735 473 AMEALCEVLHS-TQPLIVYFPDSSLWLSRAVPRCNRKEFVRKVEEMFDQLSG-PVVLICGQNKNETGPKEKEKFTMILPN 550 (1019)
Q Consensus 473 ~i~~L~e~~~~-~~p~Iiff~eid~~~~~~~~~~~~~~~~s~~~~~l~~l~g-~v~vI~~~~~~d~~~~~~~~~~~~~~~ 550 (1019)
+++.+.+.+.+ .+|.||+|||+|.+.... . .+.+..|...++.+++ ++.||+.+|..+
T Consensus 125 ~~~~~~~~l~~~~~~~viviDE~d~l~~~~----~-~~~l~~l~~~~~~~~~~~v~vI~i~~~~~--------------- 184 (394)
T PRK00411 125 LFDKIAEYLDERDRVLIVALDDINYLFEKE----G-NDVLYSLLRAHEEYPGARIGVIGISSDLT--------------- 184 (394)
T ss_pred HHHHHHHHHHhcCCEEEEEECCHhHhhccC----C-chHHHHHHHhhhccCCCeEEEEEEECCcc---------------
Confidence 55666666665 578999999999988221 1 1334444555666666 676776665433
Q ss_pred cccccCCCCchhhhhcccccCCCcchHHHHhcc-cceEEEcCCChHHHHHHHHHHHHHHh-hhhhhhhhHHHHHH
Q 001735 551 FGRLAKLPLPLQRLTEGLKATKRSDDNEIYNLF-TNVLSIHPPKEEDLLRTFNKQVEEDR-RIVIYRSNLNELHK 623 (1019)
Q Consensus 551 ~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~rrF-e~~~eI~LPdee~Rl~Il~Iht~k~~-~~~~~~~~v~~l~~ 623 (1019)
-.+.+++.+..|| ...++|++++.+...+||+.+++..- .....++.++.++.
T Consensus 185 --------------------~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~ 239 (394)
T PRK00411 185 --------------------FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIAD 239 (394)
T ss_pred --------------------hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHH
Confidence 0133667777666 46789999999999999998864321 11233334555555
No 358
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.68 E-value=0.0047 Score=58.33 Aligned_cols=23 Identities=43% Similarity=0.543 Sum_probs=20.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001735 767 GILLFGPPGTGKTLLAKALATEA 789 (1019)
Q Consensus 767 gVLL~GPpGTGKT~LArAIA~el 789 (1019)
+++|+||+|+|||+++.+++..+
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHH
Confidence 58999999999999998887776
No 359
>PRK13947 shikimate kinase; Provisional
Probab=96.67 E-value=0.0016 Score=66.33 Aligned_cols=31 Identities=42% Similarity=0.553 Sum_probs=28.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001735 767 GILLFGPPGTGKTLLAKALATEAGANFISIT 797 (1019)
Q Consensus 767 gVLL~GPpGTGKT~LArAIA~elg~~fi~Is 797 (1019)
+|+|.|+||+|||++++.+|+.+|.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5999999999999999999999999997654
No 360
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.66 E-value=0.0029 Score=66.91 Aligned_cols=68 Identities=21% Similarity=0.297 Sum_probs=42.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCC----cEEEEec-cccch---------hhhhhHHHHHHHHHHHHHhcCCeEEEecc
Q 001735 767 GILLFGPPGTGKTLLAKALATEAGA----NFISITG-STLTS---------KWFGDAEKLTKALFSFASKLAPVIIFVDE 832 (1019)
Q Consensus 767 gVLL~GPpGTGKT~LArAIA~elg~----~fi~Is~-seL~s---------~~~Ge~e~~I~~lF~~Ark~~PsIIfIDE 832 (1019)
-++|.||+|+|||+++++++..+.. .++.+.. .++.. ...+.........+..+....|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 3899999999999999999888742 2333221 11110 00111122344455566677899999999
Q ss_pred ch
Q 001735 833 VD 834 (1019)
Q Consensus 833 ID 834 (1019)
+-
T Consensus 83 ir 84 (198)
T cd01131 83 MR 84 (198)
T ss_pred CC
Confidence 83
No 361
>PRK10867 signal recognition particle protein; Provisional
Probab=96.65 E-value=0.091 Score=62.37 Aligned_cols=73 Identities=23% Similarity=0.250 Sum_probs=47.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccccchhh--------------------hhhHHHHHHHHHHH
Q 001735 764 PCKGILLFGPPGTGKTLLAKALATEA----GANFISITGSTLTSKW--------------------FGDAEKLTKALFSF 819 (1019)
Q Consensus 764 p~~gVLL~GPpGTGKT~LArAIA~el----g~~fi~Is~seL~s~~--------------------~Ge~e~~I~~lF~~ 819 (1019)
++.-+++.||+|+|||+++..+|..+ |..+..+++....... ..............
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~ 178 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEE 178 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHH
Confidence 45779999999999999888888755 5666666664321110 01233344455556
Q ss_pred HHhcCCeEEEeccchhh
Q 001735 820 ASKLAPVIIFVDEVDSL 836 (1019)
Q Consensus 820 Ark~~PsIIfIDEID~L 836 (1019)
++.....+|+||=..++
T Consensus 179 a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 179 AKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHhcCCCEEEEeCCCCc
Confidence 66666789999977654
No 362
>PRK14974 cell division protein FtsY; Provisional
Probab=96.63 E-value=0.016 Score=66.42 Aligned_cols=35 Identities=31% Similarity=0.335 Sum_probs=27.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 001735 765 CKGILLFGPPGTGKTLLAKALATEA---GANFISITGS 799 (1019)
Q Consensus 765 ~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~s 799 (1019)
+.-++|.||+|+|||++++.+|..+ |..+..+++.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~D 177 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGD 177 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 4679999999999999999998776 5556555544
No 363
>PRK03839 putative kinase; Provisional
Probab=96.63 E-value=0.0016 Score=67.18 Aligned_cols=31 Identities=39% Similarity=0.659 Sum_probs=28.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001735 767 GILLFGPPGTGKTLLAKALATEAGANFISIT 797 (1019)
Q Consensus 767 gVLL~GPpGTGKT~LArAIA~elg~~fi~Is 797 (1019)
.|+|.|+||+|||++++.+|+.++++++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 3899999999999999999999999987753
No 364
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.61 E-value=0.0074 Score=78.18 Aligned_cols=137 Identities=20% Similarity=0.229 Sum_probs=85.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc--hhhhhhH-------HHHHHHHHHHHHhcCCeEEEeccchhh
Q 001735 766 KGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT--SKWFGDA-------EKLTKALFSFASKLAPVIIFVDEVDSL 836 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~--s~~~Ge~-------e~~I~~lF~~Ark~~PsIIfIDEID~L 836 (1019)
-++||.||+-+|||.++..+|.+.|..|+.|+-.+.. ..|.|.- -..-..+.-.|-+. .--|++||+..-
T Consensus 889 fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~-GyWIVLDELNLA 967 (4600)
T COG5271 889 FPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRR-GYWIVLDELNLA 967 (4600)
T ss_pred CcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhc-CcEEEeeccccC
Confidence 3599999999999999999999999999999876542 2233310 01111222233332 245779999642
Q ss_pred hhccCCCchhHHHHHHHHHHHhhhcccccc-------CCCcEEEEEecCCCCC------CcHHHHhhCCCCcccCCCCHH
Q 001735 837 LGARGGAFEHEATRRMRNEFMSAWDGLRSK-------ESQKILILGATNRPFD------LDDAVIRRLPRRIYVDLPDAE 903 (1019)
Q Consensus 837 ~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~-------~~~~VLVIaTTN~p~~------LD~aLlrRFd~~I~V~lPd~e 903 (1019)
. ...-..+|.|+.--+.+.-+ +...+++.||-|+|.. |..|++.|| ..++|.--..+
T Consensus 968 p---------TDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRF-lE~hFddiped 1037 (4600)
T COG5271 968 P---------TDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRF-LEMHFDDIPED 1037 (4600)
T ss_pred c---------HHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhh-HhhhcccCcHH
Confidence 1 11222334443322222222 3345667777788754 788999999 67777766677
Q ss_pred HHHHHHHHHH
Q 001735 904 NRMKILRIFL 913 (1019)
Q Consensus 904 eR~eILk~~L 913 (1019)
+...||...+
T Consensus 1038 Ele~ILh~rc 1047 (4600)
T COG5271 1038 ELEEILHGRC 1047 (4600)
T ss_pred HHHHHHhccC
Confidence 8888877544
No 365
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.60 E-value=0.013 Score=60.94 Aligned_cols=71 Identities=17% Similarity=0.178 Sum_probs=47.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhh-----------------hhHHHHHHHHHHHHHhcCCeEEEe
Q 001735 768 ILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWF-----------------GDAEKLTKALFSFASKLAPVIIFV 830 (1019)
Q Consensus 768 VLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s~~~-----------------Ge~e~~I~~lF~~Ark~~PsIIfI 830 (1019)
+||.|++|+|||++|..++...+.+++++....-...-. .+....+...+.... .+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~--~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELD--PGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC--CCCEEEE
Confidence 689999999999999999988887888876654322110 112223333332211 4679999
Q ss_pred ccchhhhhcc
Q 001735 831 DEVDSLLGAR 840 (1019)
Q Consensus 831 DEID~L~~~r 840 (1019)
|-+..|....
T Consensus 80 Dclt~~~~n~ 89 (169)
T cd00544 80 DCLTLWVTNL 89 (169)
T ss_pred EcHhHHHHHh
Confidence 9999987654
No 366
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.60 E-value=0.023 Score=61.24 Aligned_cols=38 Identities=26% Similarity=0.383 Sum_probs=30.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecc
Q 001735 762 LRPCKGILLFGPPGTGKTLLAKALATEA----GANFISITGS 799 (1019)
Q Consensus 762 ~~p~~gVLL~GPpGTGKT~LArAIA~el----g~~fi~Is~s 799 (1019)
+.+..-++|.|+||+|||+++..++... +.+++.+++.
T Consensus 10 l~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E 51 (242)
T cd00984 10 LQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLE 51 (242)
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCC
Confidence 4566679999999999999999887654 7788777753
No 367
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=96.59 E-value=0.0033 Score=73.60 Aligned_cols=63 Identities=25% Similarity=0.317 Sum_probs=40.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhh
Q 001735 763 RPCKGILLFGPPGTGKTLLAKALATEA----GANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLL 837 (1019)
Q Consensus 763 ~p~~gVLL~GPpGTGKT~LArAIA~el----g~~fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~ 837 (1019)
....++++.||+|||||+|+.+++... | -.++.+.|+... .. ..+.. -....+|+|||+..+.
T Consensus 207 e~~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L----~~---~~lg~--v~~~DlLI~DEvgylp 273 (449)
T TIGR02688 207 EPNYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNI----ST---RQIGL--VGRWDVVAFDEVATLK 273 (449)
T ss_pred hcCCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHH----HH---HHHhh--hccCCEEEEEcCCCCc
Confidence 344679999999999999999998772 4 223333333221 11 11111 1235899999998864
No 368
>PRK13695 putative NTPase; Provisional
Probab=96.59 E-value=0.01 Score=61.19 Aligned_cols=23 Identities=43% Similarity=0.598 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001735 767 GILLFGPPGTGKTLLAKALATEA 789 (1019)
Q Consensus 767 gVLL~GPpGTGKT~LArAIA~el 789 (1019)
.++|.|++|+|||+|++.++..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999988775
No 369
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.58 E-value=0.002 Score=64.16 Aligned_cols=31 Identities=35% Similarity=0.626 Sum_probs=28.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001735 767 GILLFGPPGTGKTLLAKALATEAGANFISIT 797 (1019)
Q Consensus 767 gVLL~GPpGTGKT~LArAIA~elg~~fi~Is 797 (1019)
+|+|+|+||+|||++|+.+|..++++++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4899999999999999999999999988654
No 370
>PRK04296 thymidine kinase; Provisional
Probab=96.58 E-value=0.012 Score=61.84 Aligned_cols=69 Identities=17% Similarity=0.228 Sum_probs=40.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec--c--c----cchhhhhh-HH----HHHHHHHHHH--HhcCCeEE
Q 001735 767 GILLFGPPGTGKTLLAKALATEA---GANFISITG--S--T----LTSKWFGD-AE----KLTKALFSFA--SKLAPVII 828 (1019)
Q Consensus 767 gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~--s--e----L~s~~~Ge-~e----~~I~~lF~~A--rk~~PsII 828 (1019)
-+|++||+|+|||+++..++..+ +..++.+.+ . . +.+. .|- .. .....++..+ ....+.+|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~-lg~~~~~~~~~~~~~~~~~~~~~~~~~dvv 82 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSR-IGLSREAIPVSSDTDIFELIEEEGEKIDCV 82 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecC-CCCcccceEeCChHHHHHHHHhhCCCCCEE
Confidence 47899999999999999888776 555555533 1 1 1111 110 00 1122333332 23457899
Q ss_pred Eeccchhh
Q 001735 829 FVDEVDSL 836 (1019)
Q Consensus 829 fIDEID~L 836 (1019)
+|||++.+
T Consensus 83 iIDEaq~l 90 (190)
T PRK04296 83 LIDEAQFL 90 (190)
T ss_pred EEEccccC
Confidence 99999765
No 371
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.006 Score=71.32 Aligned_cols=75 Identities=19% Similarity=0.294 Sum_probs=61.0
Q ss_pred ccccccccccc---------cchhhHHHHHHhhhhcccCcccccccccccCCCCCceeeccCCChhHHHHHHHHHHHhhc
Q 001735 177 INISWDTFPYY---------INENTKSLLVECVGSHLKHKKFTATFGARLTSSSGRILLRSVPGTELYRERLIRALAREL 247 (1019)
Q Consensus 177 ~~vsf~~fpyy---------lse~tk~~L~~~~~~hL~~~~~~~~~~~~l~~~s~rILL~~~pgsE~Yqe~L~kALA~~~ 247 (1019)
-.-.|..||+= +....|.-+++=..-.++.+++ |.+.=-+=-|.-||+|||| ...-.++=|+|+|+
T Consensus 185 ~~~~W~~v~f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~---YkrvGkawKRGYLLYGPPG--TGKSS~IaAmAn~L 259 (457)
T KOG0743|consen 185 KGGEWRSVGFPHPSTFETLAMDPDLKERIIDDLDDFIKGKDF---YKRVGKAWKRGYLLYGPPG--TGKSSFIAAMANYL 259 (457)
T ss_pred cCCcceecCCCCCCCccccccChhHHHHHHHHHHHHHhcchH---HHhcCcchhccceeeCCCC--CCHHHHHHHHHhhc
Confidence 35567777663 5788899999999999999998 5555556678899999999 79999999999999
Q ss_pred CCcEEEeec
Q 001735 248 QVPLLVLDS 256 (1019)
Q Consensus 248 ~a~LL~lDs 256 (1019)
+-..-.|.-
T Consensus 260 ~ydIydLeL 268 (457)
T KOG0743|consen 260 NYDIYDLEL 268 (457)
T ss_pred CCceEEeee
Confidence 876665554
No 372
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.57 E-value=0.01 Score=63.12 Aligned_cols=69 Identities=30% Similarity=0.470 Sum_probs=43.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH-----hCCcE-------------EEEeccc-cc---hhhhhhHHHHHHHHHHHHHhc
Q 001735 766 KGILLFGPPGTGKTLLAKALATE-----AGANF-------------ISITGST-LT---SKWFGDAEKLTKALFSFASKL 823 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~e-----lg~~f-------------i~Is~se-L~---s~~~Ge~e~~I~~lF~~Ark~ 823 (1019)
.-++|.||.|+|||+|.+.|+.. .|.++ ..++..+ +. +.+..+. ..+..++..+...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~-~~~~~iL~~~~~~ 104 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAEL-RRLKEIVEKAKKG 104 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHH-HHHHHHHHhccCC
Confidence 56899999999999999999843 35432 1111111 10 1111122 4466667766555
Q ss_pred CCeEEEeccchh
Q 001735 824 APVIIFVDEVDS 835 (1019)
Q Consensus 824 ~PsIIfIDEID~ 835 (1019)
.|.+|++||.-.
T Consensus 105 ~p~llllDEp~~ 116 (199)
T cd03283 105 EPVLFLLDEIFK 116 (199)
T ss_pred CCeEEEEecccC
Confidence 899999999744
No 373
>PRK04328 hypothetical protein; Provisional
Probab=96.57 E-value=0.021 Score=62.61 Aligned_cols=37 Identities=24% Similarity=0.406 Sum_probs=28.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001735 762 LRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITG 798 (1019)
Q Consensus 762 ~~p~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~ 798 (1019)
+.+...+||+||||+|||.|+..++.+. |-+.++++.
T Consensus 20 ip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 20 IPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 4566789999999999999999876542 556666554
No 374
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.57 E-value=0.013 Score=58.23 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=36.8
Q ss_pred cccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 001735 731 DIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA 789 (1019)
Q Consensus 731 DIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~el 789 (1019)
.|.|+.-+.+.+...+...+..+. -..|.-+-|+|+||||||++++.||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~-------p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPN-------PRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCC-------CCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 356777777777777765544321 1223345599999999999999999985
No 375
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=96.52 E-value=0.0036 Score=69.20 Aligned_cols=73 Identities=29% Similarity=0.390 Sum_probs=51.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHH------HhCCcEEEEeccccchhhhhhH-HHHHHHHHHHHH--------hcCCeEEEe
Q 001735 766 KGILLFGPPGTGKTLLAKALAT------EAGANFISITGSTLTSKWFGDA-EKLTKALFSFAS--------KLAPVIIFV 830 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~------elg~~fi~Is~seL~s~~~Ge~-e~~I~~lF~~Ar--------k~~PsIIfI 830 (1019)
..+||.||+|.||+.||+.|.. .+..+|+.++|..+.++..... -..++..|.-|+ .....++|+
T Consensus 209 ~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggmlfl 288 (531)
T COG4650 209 APILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGMLFL 288 (531)
T ss_pred CCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceEeh
Confidence 4599999999999999999853 4578999999999876532111 122333343332 224579999
Q ss_pred ccchhhhh
Q 001735 831 DEVDSLLG 838 (1019)
Q Consensus 831 DEID~L~~ 838 (1019)
|||..+..
T Consensus 289 deigelga 296 (531)
T COG4650 289 DEIGELGA 296 (531)
T ss_pred HhhhhcCc
Confidence 99998853
No 376
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.52 E-value=0.0055 Score=71.09 Aligned_cols=110 Identities=22% Similarity=0.297 Sum_probs=60.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----C-CcEEEEeccccch----------hhhhh------HHHHHHHHHHHHHh
Q 001735 764 PCKGILLFGPPGTGKTLLAKALATEA----G-ANFISITGSTLTS----------KWFGD------AEKLTKALFSFASK 822 (1019)
Q Consensus 764 p~~gVLL~GPpGTGKT~LArAIA~el----g-~~fi~Is~seL~s----------~~~Ge------~e~~I~~lF~~Ark 822 (1019)
....++|.||+|+|||+++..||..+ | ..+..++...... ...+- ....+.... .+.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l--~~l 213 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLAL--AEL 213 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHH--HHh
Confidence 34579999999999999999999764 3 2444444433210 00000 001111111 222
Q ss_pred cCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHH
Q 001735 823 LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAV 887 (1019)
Q Consensus 823 ~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~LD~aL 887 (1019)
....+|+||.....-. +..+.+.+..+..... ....++||.+|+....+...+
T Consensus 214 ~~~DlVLIDTaG~~~~-----------d~~l~e~La~L~~~~~-~~~~lLVLsAts~~~~l~evi 266 (374)
T PRK14722 214 RNKHMVLIDTIGMSQR-----------DRTVSDQIAMLHGADT-PVQRLLLLNATSHGDTLNEVV 266 (374)
T ss_pred cCCCEEEEcCCCCCcc-----------cHHHHHHHHHHhccCC-CCeEEEEecCccChHHHHHHH
Confidence 3458999999865310 1123334444433321 234688888888877776543
No 377
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.49 E-value=0.016 Score=63.90 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=23.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC
Q 001735 765 CKGILLFGPPGTGKTLLAKALATEAGA 791 (1019)
Q Consensus 765 ~~gVLL~GPpGTGKT~LArAIA~elg~ 791 (1019)
...++|.||+|+|||+|++.+++....
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 356999999999999999999988743
No 378
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.48 E-value=0.0021 Score=65.11 Aligned_cols=32 Identities=47% Similarity=0.802 Sum_probs=29.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001735 766 KGILLFGPPGTGKTLLAKALATEAGANFISIT 797 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is 797 (1019)
.+||++|-||||||+|+.+||..++++++.++
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 56999999999999999999999999998863
No 379
>PRK13948 shikimate kinase; Provisional
Probab=96.48 E-value=0.0046 Score=64.97 Aligned_cols=36 Identities=31% Similarity=0.360 Sum_probs=32.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001735 762 LRPCKGILLFGPPGTGKTLLAKALATEAGANFISIT 797 (1019)
Q Consensus 762 ~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is 797 (1019)
..++..|+|.|.+|+|||++++.+|+.++.+|+..+
T Consensus 7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 7 ERPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 456688999999999999999999999999998654
No 380
>PRK00625 shikimate kinase; Provisional
Probab=96.46 E-value=0.0026 Score=66.21 Aligned_cols=31 Identities=39% Similarity=0.484 Sum_probs=28.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001735 767 GILLFGPPGTGKTLLAKALATEAGANFISIT 797 (1019)
Q Consensus 767 gVLL~GPpGTGKT~LArAIA~elg~~fi~Is 797 (1019)
.|+|.|.||+|||++++.+|+.++++|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999998765
No 381
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.46 E-value=0.011 Score=69.34 Aligned_cols=98 Identities=17% Similarity=0.304 Sum_probs=65.5
Q ss_pred CCeEEEEcCchhhhhcccCCccHHHHHHHHHHHHhcCCCCEEEEecccCCCCCccccccccccccccccccCCCCchhhh
Q 001735 485 QPLIVYFPDSSLWLSRAVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPNFGRLAKLPLPLQRL 564 (1019)
Q Consensus 485 ~p~Iiff~eid~~~~~~~~~~~~~~~~s~~~~~l~~l~g~v~vI~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 564 (1019)
++-+|+|||++.+... ...++.++.+|..+.+. |..+||+++..+. +
T Consensus 199 ~~dlLiiDDi~~l~~~---~~~~~~l~~~~n~~~~~--~~~iiits~~~p~----~------------------------ 245 (405)
T TIGR00362 199 SVDLLLIDDIQFLAGK---ERTQEEFFHTFNALHEN--GKQIVLTSDRPPK----E------------------------ 245 (405)
T ss_pred hCCEEEEehhhhhcCC---HHHHHHHHHHHHHHHHC--CCCEEEecCCCHH----H------------------------
Confidence 3679999999987532 12345677777766553 5556665655433 0
Q ss_pred hcccccCCCcchHHHHhccc--ceEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001735 565 TEGLKATKRSDDNEIYNLFT--NVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHK 623 (1019)
Q Consensus 565 vIGmTNR~d~iDeaL~rrFe--~~~eI~LPdee~Rl~Il~Iht~k~~~~~~~~~~v~~l~~ 623 (1019)
.+.+++.|..||. ..++|++||.+.|.+|++..... ......++-++.|+.
T Consensus 246 -------l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~-~~~~l~~e~l~~ia~ 298 (405)
T TIGR00362 246 -------LPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEE-EGLELPDEVLEFIAK 298 (405)
T ss_pred -------HhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHH-cCCCCCHHHHHHHHH
Confidence 1236788888997 47999999999999999987544 334444444555554
No 382
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.45 E-value=0.0041 Score=68.48 Aligned_cols=98 Identities=24% Similarity=0.358 Sum_probs=59.0
Q ss_pred CcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEe-cccc
Q 001735 726 GVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAG---ANFISIT-GSTL 801 (1019)
Q Consensus 726 ~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg---~~fi~Is-~seL 801 (1019)
..++++++-.....+.+.+++... .+...++|+.||+|+|||+++++++.+.. ..++.+. ..++
T Consensus 100 ~~sle~l~~~~~~~~~~~~~l~~~------------v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 100 PFSLEDLGESGSIPEEIAEFLRSA------------VRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp --CHCCCCHTHHCHHHHHHHHHHC------------HHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred cccHhhccCchhhHHHHHHHHhhc------------cccceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 346777766665556666655432 12236799999999999999999998873 3444443 2222
Q ss_pred chhh-------hhhHHHHHHHHHHHHHhcCCeEEEeccchh
Q 001735 802 TSKW-------FGDAEKLTKALFSFASKLAPVIIFVDEVDS 835 (1019)
Q Consensus 802 ~s~~-------~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~ 835 (1019)
.-.. ..........++..+-+..|.+|+|.||-.
T Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~ 208 (270)
T PF00437_consen 168 RLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRD 208 (270)
T ss_dssp --SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-S
T ss_pred eecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccCC
Confidence 1110 011233455667777888999999999964
No 383
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.44 E-value=0.0025 Score=65.68 Aligned_cols=34 Identities=21% Similarity=0.480 Sum_probs=27.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch
Q 001735 768 ILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS 803 (1019)
Q Consensus 768 VLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s 803 (1019)
|+|.||||+|||++|+.+|.++|+.. +++.+++.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~--is~~d~lr 35 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTH--LSAGDLLR 35 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE--EECChHHH
Confidence 78999999999999999999998654 55555543
No 384
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.44 E-value=0.035 Score=59.45 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=30.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 001735 762 LRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGS 799 (1019)
Q Consensus 762 ~~p~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~s 799 (1019)
+.+...++|.|+||+|||.++..++.+. |-++++++..
T Consensus 13 i~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e 53 (224)
T TIGR03880 13 FPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE 53 (224)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 4566779999999999999999887653 6677777654
No 385
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.42 E-value=0.036 Score=59.45 Aligned_cols=37 Identities=30% Similarity=0.414 Sum_probs=28.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001735 762 LRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITG 798 (1019)
Q Consensus 762 ~~p~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~ 798 (1019)
+.+...++|.||||+|||+|+..++.+. |.+.+.++.
T Consensus 17 i~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 17 IPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 5566789999999999999999876543 556666654
No 386
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.42 E-value=0.022 Score=71.58 Aligned_cols=94 Identities=12% Similarity=0.152 Sum_probs=66.9
Q ss_pred HHHHHHHHHhh--cCCeEEEEcCchhhhhcccCCccHHHHHHHHHHHHhcCCCCEEEEecccCCCCCccccccccccccc
Q 001735 473 AMEALCEVLHS--TQPLIVYFPDSSLWLSRAVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPN 550 (1019)
Q Consensus 473 ~i~~L~e~~~~--~~p~Iiff~eid~~~~~~~~~~~~~~~~s~~~~~l~~l~g~v~vI~~~~~~d~~~~~~~~~~~~~~~ 550 (1019)
+++.||+.+.+ ..+.||++||||.|... .+..++.++.... .-.++|+|||.+|..+
T Consensus 855 vLerLF~~L~k~~r~v~IIILDEID~L~kK-----~QDVLYnLFR~~~-~s~SKLiLIGISNdlD--------------- 913 (1164)
T PTZ00112 855 ILDRLFNQNKKDNRNVSILIIDEIDYLITK-----TQKVLFTLFDWPT-KINSKLVLIAISNTMD--------------- 913 (1164)
T ss_pred HHHHHHhhhhcccccceEEEeehHhhhCcc-----HHHHHHHHHHHhh-ccCCeEEEEEecCchh---------------
Confidence 67788887743 35679999999999743 2345666655422 3467899998888544
Q ss_pred cccccCCCCchhhhhcccccCCCcchHHHHhcccc-eEEEcCCChHHHHHHHHHHHHH
Q 001735 551 FGRLAKLPLPLQRLTEGLKATKRSDDNEIYNLFTN-VLSIHPPKEEDLLRTFNKQVEE 607 (1019)
Q Consensus 551 ~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~rrFe~-~~eI~LPdee~Rl~Il~Iht~k 607 (1019)
-++.+++.|..||.. ++.|++++.+...+||+..++.
T Consensus 914 --------------------LperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~ 951 (1164)
T PTZ00112 914 --------------------LPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLEN 951 (1164)
T ss_pred --------------------cchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHh
Confidence 124467788777754 4888999999999999877543
No 387
>PRK14532 adenylate kinase; Provisional
Probab=96.41 E-value=0.0028 Score=65.85 Aligned_cols=36 Identities=33% Similarity=0.587 Sum_probs=29.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchh
Q 001735 767 GILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSK 804 (1019)
Q Consensus 767 gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s~ 804 (1019)
.|+|.||||+|||++|+.+|..+|++++ ++.+++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~i--s~~d~lr~ 37 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQL--STGDMLRA 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE--eCcHHHHH
Confidence 4899999999999999999999987665 45455443
No 388
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.40 E-value=0.0087 Score=71.88 Aligned_cols=96 Identities=20% Similarity=0.278 Sum_probs=61.4
Q ss_pred CCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEec-cc
Q 001735 725 IGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAG---ANFISITG-ST 800 (1019)
Q Consensus 725 ~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg---~~fi~Is~-se 800 (1019)
...+++++|-..+..+.++.++.. +..-+|++||+|+|||++..++..++. .+++.+.- .+
T Consensus 217 ~~~~l~~Lg~~~~~~~~l~~~~~~---------------~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE 281 (486)
T TIGR02533 217 VRLDLETLGMSPELLSRFERLIRR---------------PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVE 281 (486)
T ss_pred CCCCHHHcCCCHHHHHHHHHHHhc---------------CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCee
Confidence 345788998888888888876632 112389999999999999998887763 34555422 11
Q ss_pred cchhh-----hh-hHHHHHHHHHHHHHhcCCeEEEeccchh
Q 001735 801 LTSKW-----FG-DAEKLTKALFSFASKLAPVIIFVDEVDS 835 (1019)
Q Consensus 801 L~s~~-----~G-e~e~~I~~lF~~Ark~~PsIIfIDEID~ 835 (1019)
+.-.. .. ............+-+..|.||+|.||-.
T Consensus 282 ~~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiRd 322 (486)
T TIGR02533 282 YQIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIRD 322 (486)
T ss_pred eecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCCC
Confidence 11100 11 0111233444555678999999999954
No 389
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.39 E-value=0.0051 Score=68.52 Aligned_cols=69 Identities=25% Similarity=0.386 Sum_probs=43.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC----------cEEEEe-ccccchhh-------hh------hHHHHHHHHHHHHH
Q 001735 766 KGILLFGPPGTGKTLLAKALATEAGA----------NFISIT-GSTLTSKW-------FG------DAEKLTKALFSFAS 821 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~elg~----------~fi~Is-~seL~s~~-------~G------e~e~~I~~lF~~Ar 821 (1019)
.+++|.||+|+|||+|.++++..+.. .+..++ ..++...+ .+ +.......++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 57999999999999999999988732 222221 11211110 00 11122345666777
Q ss_pred hcCCeEEEeccch
Q 001735 822 KLAPVIIFVDEVD 834 (1019)
Q Consensus 822 k~~PsIIfIDEID 834 (1019)
.+.|.||++||+.
T Consensus 192 ~~~P~villDE~~ 204 (270)
T TIGR02858 192 SMSPDVIVVDEIG 204 (270)
T ss_pred hCCCCEEEEeCCC
Confidence 7899999999963
No 390
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.38 E-value=0.0084 Score=63.68 Aligned_cols=108 Identities=23% Similarity=0.293 Sum_probs=56.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchh-------h------------hh-hHHHHHHHHHHHHH
Q 001735 765 CKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSK-------W------------FG-DAEKLTKALFSFAS 821 (1019)
Q Consensus 765 ~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~s~-------~------------~G-e~e~~I~~lF~~Ar 821 (1019)
|+-++|.||+|+|||+.+..+|..+ +..+-.+++...... | .. +....+....+.+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 3568999999999999999998876 444444443322110 0 00 12233444555555
Q ss_pred hcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCc
Q 001735 822 KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLD 884 (1019)
Q Consensus 822 k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~LD 884 (1019)
...-.+|+||=.... ..+.+.... +..++..+ .+...++|+.++.....+.
T Consensus 81 ~~~~D~vlIDT~Gr~------~~d~~~~~e-l~~~~~~~-----~~~~~~LVlsa~~~~~~~~ 131 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRS------PRDEELLEE-LKKLLEAL-----NPDEVHLVLSATMGQEDLE 131 (196)
T ss_dssp HTTSSEEEEEE-SSS------STHHHHHHH-HHHHHHHH-----SSSEEEEEEEGGGGGHHHH
T ss_pred hcCCCEEEEecCCcc------hhhHHHHHH-HHHHhhhc-----CCccceEEEecccChHHHH
Confidence 545578888876542 111111112 22333332 2334566777766655555
No 391
>PRK04195 replication factor C large subunit; Provisional
Probab=96.38 E-value=0.037 Score=66.40 Aligned_cols=62 Identities=27% Similarity=0.322 Sum_probs=44.5
Q ss_pred cccccccccchhhHHHHHHhhhhcccCcccccccccccCCCCCceeeccCCChhHHHHHHHHHHHhhcCCcEEEeecC
Q 001735 180 SWDTFPYYINENTKSLLVECVGSHLKHKKFTATFGARLTSSSGRILLRSVPGTELYRERLIRALARELQVPLLVLDSS 257 (1019)
Q Consensus 180 sf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~~l~~~s~rILL~~~pgsE~Yqe~L~kALA~~~~a~LL~lDs~ 257 (1019)
+|+++-+. +..+..|.+.+-.+.+. ...+.+||+|||| ....+||+|||++++..++.++.+
T Consensus 12 ~l~dlvg~--~~~~~~l~~~l~~~~~g------------~~~~~lLL~GppG--~GKTtla~ala~el~~~~ielnas 73 (482)
T PRK04195 12 TLSDVVGN--EKAKEQLREWIESWLKG------------KPKKALLLYGPPG--VGKTSLAHALANDYGWEVIELNAS 73 (482)
T ss_pred CHHHhcCC--HHHHHHHHHHHHHHhcC------------CCCCeEEEECCCC--CCHHHHHHHHHHHcCCCEEEEccc
Confidence 44554443 77777777766433310 1156799999999 899999999999999887777653
No 392
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.38 E-value=0.026 Score=65.97 Aligned_cols=113 Identities=18% Similarity=0.187 Sum_probs=62.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEeccccchh-------h---------hhhHHHHHHHHHHHHH
Q 001735 765 CKGILLFGPPGTGKTLLAKALATEA-------GANFISITGSTLTSK-------W---------FGDAEKLTKALFSFAS 821 (1019)
Q Consensus 765 ~~gVLL~GPpGTGKT~LArAIA~el-------g~~fi~Is~seL~s~-------~---------~Ge~e~~I~~lF~~Ar 821 (1019)
+..++|+||+|+|||+++..+|..+ +..+..+++...... | .......+...+...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~- 252 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS- 252 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-
Confidence 4679999999999999999999765 234444443332100 0 011112223322222
Q ss_pred hcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHhhC
Q 001735 822 KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRL 891 (1019)
Q Consensus 822 k~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlrRF 891 (1019)
....+|+||.+..... ... .+.++...++.... +...++|+.+|.....+.. +..+|
T Consensus 253 -~~~DlVLIDTaGr~~~------~~~----~l~el~~~l~~~~~-~~e~~LVlsat~~~~~~~~-~~~~~ 309 (388)
T PRK12723 253 -KDFDLVLVDTIGKSPK------DFM----KLAEMKELLNACGR-DAEFHLAVSSTTKTSDVKE-IFHQF 309 (388)
T ss_pred -CCCCEEEEcCCCCCcc------CHH----HHHHHHHHHHhcCC-CCeEEEEEcCCCCHHHHHH-HHHHh
Confidence 3458999999987521 111 13344444433321 2357888888877666664 33444
No 393
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.34 E-value=0.21 Score=56.07 Aligned_cols=28 Identities=29% Similarity=0.265 Sum_probs=24.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhC
Q 001735 763 RPCKGILLFGPPGTGKTLLAKALATEAG 790 (1019)
Q Consensus 763 ~p~~gVLL~GPpGTGKT~LArAIA~elg 790 (1019)
.++..|.|+|+=|+|||++.+.+-+++.
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~ 45 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELK 45 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567799999999999999999988773
No 394
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.34 E-value=0.0065 Score=72.13 Aligned_cols=109 Identities=18% Similarity=0.175 Sum_probs=69.8
Q ss_pred hhhhcccccCCCCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC
Q 001735 712 ESNFVSAVVPPGEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA 791 (1019)
Q Consensus 712 e~~~~~~ii~~~e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~ 791 (1019)
.+.....+++......+|+++|......+.+..++.. |..-+|+.||+|+|||+..-++.++++.
T Consensus 220 GEkvVlRil~~~~~~l~l~~Lg~~~~~~~~~~~~~~~---------------p~GliLvTGPTGSGKTTTLY~~L~~ln~ 284 (500)
T COG2804 220 GEKVVLRILDKDQVILDLEKLGMSPFQLARLLRLLNR---------------PQGLILVTGPTGSGKTTTLYAALSELNT 284 (500)
T ss_pred CcEEEEEEeccccccCCHHHhCCCHHHHHHHHHHHhC---------------CCeEEEEeCCCCCCHHHHHHHHHHHhcC
Confidence 3444455666655667899999999999999887733 2233788899999999999999999865
Q ss_pred cEE---EEec-cccchhhhhh------HHHHHHHHHHHHHhcCCeEEEeccchh
Q 001735 792 NFI---SITG-STLTSKWFGD------AEKLTKALFSFASKLAPVIIFVDEVDS 835 (1019)
Q Consensus 792 ~fi---~Is~-seL~s~~~Ge------~e~~I~~lF~~Ark~~PsIIfIDEID~ 835 (1019)
+.. .+.- -+..-..+.+ ..-.....+...-++.|.||+|.||-.
T Consensus 285 ~~~nI~TiEDPVE~~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIRD 338 (500)
T COG2804 285 PERNIITIEDPVEYQLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIRD 338 (500)
T ss_pred CCceEEEeeCCeeeecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccCC
Confidence 443 3211 1111000000 011122334444577899999999965
No 395
>PRK06762 hypothetical protein; Provisional
Probab=96.33 E-value=0.0087 Score=60.84 Aligned_cols=37 Identities=27% Similarity=0.442 Sum_probs=30.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 001735 766 KGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT 802 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~ 802 (1019)
.-|+|.|+||+|||++|+.++..++..++.++...+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r 39 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVR 39 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHH
Confidence 4589999999999999999999996666666654443
No 396
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=96.32 E-value=0.011 Score=70.99 Aligned_cols=150 Identities=22% Similarity=0.324 Sum_probs=82.9
Q ss_pred cccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE---------eccc-
Q 001735 731 DIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISI---------TGST- 800 (1019)
Q Consensus 731 DIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~I---------s~se- 800 (1019)
.|-|..++|.++.-.+.--..+-. .....++.--+|||.|.|||||+-+.+.+++-....++.. ++.-
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~--~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~ 527 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNP--GGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVR 527 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCC--CCCceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEe
Confidence 367889999888665533221110 0111133345699999999999999999998775444332 1110
Q ss_pred ---cchhhhhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHH-----HHHHhhhccccccCCCcEE
Q 001735 801 ---LTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMR-----NEFMSAWDGLRSKESQKIL 872 (1019)
Q Consensus 801 ---L~s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril-----~~LL~~Ldgl~~~~~~~VL 872 (1019)
+...|.-+.... -.| ...|.+|||+|.+......+. ++++.+-. .-+...| ..+..
T Consensus 528 KdPvtrEWTLEaGAL-----VLA---DkGvClIDEFDKMndqDRtSI-HEAMEQQSISISKAGIVtsL-------qArct 591 (854)
T KOG0477|consen 528 KDPVTREWTLEAGAL-----VLA---DKGVCLIDEFDKMNDQDRTSI-HEAMEQQSISISKAGIVTSL-------QARCT 591 (854)
T ss_pred eCCccceeeeccCeE-----EEc---cCceEEeehhhhhcccccchH-HHHHHhcchhhhhhhHHHHH-------Hhhhh
Confidence 111222111111 111 237899999999965433222 33322110 1122222 23577
Q ss_pred EEEecCCC---C----------CCcHHHHhhCCCCcccC
Q 001735 873 ILGATNRP---F----------DLDDAVIRRLPRRIYVD 898 (1019)
Q Consensus 873 VIaTTN~p---~----------~LD~aLlrRFd~~I~V~ 898 (1019)
||+|+|+. . +|.+.+++||+....|.
T Consensus 592 vIAAanPigGRY~~s~tFaqNV~ltePIlSRFDiLcVvk 630 (854)
T KOG0477|consen 592 VIAAANPIGGRYNPSLTFAQNVDLTEPILSRFDILCVVK 630 (854)
T ss_pred hheecCCCCCccCCccchhhccccccchhhhcceeeeee
Confidence 89999862 1 36678999998665553
No 397
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.32 E-value=0.053 Score=65.54 Aligned_cols=86 Identities=6% Similarity=0.092 Sum_probs=59.7
Q ss_pred HHHHHHHHhh----cCCeEEEEcCchhhhhcccCCccHHHHHHHHHHHHhcCCCCEEEEecccCCCCCcccccccccccc
Q 001735 474 MEALCEVLHS----TQPLIVYFPDSSLWLSRAVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILP 549 (1019)
Q Consensus 474 i~~L~e~~~~----~~p~Iiff~eid~~~~~~~~~~~~~~~~s~~~~~l~~l~g~v~vI~~~~~~d~~~~~~~~~~~~~~ 549 (1019)
|..+.+.+.. ...-||++||++.+-. .-.+.|++.|+..++.+++|.+++
T Consensus 113 Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~---------~a~naLLk~LEepp~~~vfI~aTt----------------- 166 (507)
T PRK06645 113 IRRIIESAEYKPLQGKHKIFIIDEVHMLSK---------GAFNALLKTLEEPPPHIIFIFATT----------------- 166 (507)
T ss_pred HHHHHHHHHhccccCCcEEEEEEChhhcCH---------HHHHHHHHHHhhcCCCEEEEEEeC-----------------
Confidence 3445555432 2345999999997631 334567777888888888874443
Q ss_pred ccccccCCCCchhhhhcccccCCCcchHHHHhcccceEEEcCCChHHHHHHHHHHHHH
Q 001735 550 NFGRLAKLPLPLQRLTEGLKATKRSDDNEIYNLFTNVLSIHPPKEEDLLRTFNKQVEE 607 (1019)
Q Consensus 550 ~~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~rrFe~~~eI~LPdee~Rl~Il~Iht~k 607 (1019)
.++.|.++|..|. ..++|..++.+...++++...++
T Consensus 167 ---------------------e~~kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~ 202 (507)
T PRK06645 167 ---------------------EVQKIPATIISRC-QRYDLRRLSFEEIFKLLEYITKQ 202 (507)
T ss_pred ---------------------ChHHhhHHHHhcc-eEEEccCCCHHHHHHHHHHHHHH
Confidence 3345778888888 57899999998888888776543
No 398
>PRK13949 shikimate kinase; Provisional
Probab=96.30 E-value=0.0034 Score=64.91 Aligned_cols=32 Identities=50% Similarity=0.701 Sum_probs=29.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001735 766 KGILLFGPPGTGKTLLAKALATEAGANFISIT 797 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is 797 (1019)
+.|+|.|+||+|||++++.+|+.++++++..+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 35999999999999999999999999988765
No 399
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.29 E-value=0.0035 Score=61.65 Aligned_cols=30 Identities=37% Similarity=0.640 Sum_probs=28.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001735 768 ILLFGPPGTGKTLLAKALATEAGANFISIT 797 (1019)
Q Consensus 768 VLL~GPpGTGKT~LArAIA~elg~~fi~Is 797 (1019)
|+|.|+||+|||++|+.+|..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 789999999999999999999999998876
No 400
>PRK14531 adenylate kinase; Provisional
Probab=96.29 E-value=0.0039 Score=64.92 Aligned_cols=30 Identities=37% Similarity=0.693 Sum_probs=26.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001735 766 KGILLFGPPGTGKTLLAKALATEAGANFIS 795 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~elg~~fi~ 795 (1019)
..|+|.||||+|||++++.+|..+|++++.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is 32 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS 32 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence 359999999999999999999999987655
No 401
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=96.29 E-value=0.025 Score=64.76 Aligned_cols=93 Identities=14% Similarity=0.228 Sum_probs=61.8
Q ss_pred HHHHHHHHHhh-cCCeEEEEcCchhhhhcccCCccHHHHHHHHHHH--HhcCC-CCEEEEecccCCCCCccccccccccc
Q 001735 473 AMEALCEVLHS-TQPLIVYFPDSSLWLSRAVPRCNRKEFVRKVEEM--FDQLS-GPVVLICGQNKNETGPKEKEKFTMIL 548 (1019)
Q Consensus 473 ~i~~L~e~~~~-~~p~Iiff~eid~~~~~~~~~~~~~~~~s~~~~~--l~~l~-g~v~vI~~~~~~d~~~~~~~~~~~~~ 548 (1019)
+++.+++.+.. .+|.||+|||+|.++.. . ..++..|... ...++ .+|.+|+.+|.++.
T Consensus 116 ~~~~l~~~l~~~~~~~vlvIDE~d~L~~~-----~-~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~------------ 177 (365)
T TIGR02928 116 VFRRLYKELNERGDSLIIVLDEIDYLVGD-----D-DDLLYQLSRARSNGDLDNAKVGVIGISNDLKF------------ 177 (365)
T ss_pred HHHHHHHHHHhcCCeEEEEECchhhhccC-----C-cHHHHhHhccccccCCCCCeEEEEEEECCcch------------
Confidence 46667776654 57899999999999822 1 1332233332 23333 56666655554430
Q ss_pred cccccccCCCCchhhhhcccccCCCcchHHHHhccc-ceEEEcCCChHHHHHHHHHHHH
Q 001735 549 PNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYNLFT-NVLSIHPPKEEDLLRTFNKQVE 606 (1019)
Q Consensus 549 ~~~~~~~~~~~~~~~LvIGmTNR~d~iDeaL~rrFe-~~~eI~LPdee~Rl~Il~Iht~ 606 (1019)
.+.+++.+.+||. ..++|++++.+...+|++.+++
T Consensus 178 -----------------------~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 178 -----------------------RENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred -----------------------HhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 1236778888885 7899999999999999998865
No 402
>PRK10436 hypothetical protein; Provisional
Probab=96.28 E-value=0.01 Score=70.86 Aligned_cols=102 Identities=17% Similarity=0.225 Sum_probs=64.8
Q ss_pred ccCCCCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEE
Q 001735 719 VVPPGEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAG---ANFIS 795 (1019)
Q Consensus 719 ii~~~e~~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg---~~fi~ 795 (1019)
+++......+++++|-.....+.+++++.. +..-||+.||+|+|||++..++..+++ .+++.
T Consensus 187 ll~~~~~~~~L~~LG~~~~~~~~l~~~~~~---------------~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~T 251 (462)
T PRK10436 187 LLQQVQQALDLETLGMTPAQLAQFRQALQQ---------------PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICS 251 (462)
T ss_pred EeccccCCCCHHHcCcCHHHHHHHHHHHHh---------------cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEE
Confidence 444443346889999888888888877633 223489999999999999988877763 34444
Q ss_pred Ee-ccccchhh-----hh-hHHHHHHHHHHHHHhcCCeEEEeccchh
Q 001735 796 IT-GSTLTSKW-----FG-DAEKLTKALFSFASKLAPVIIFVDEVDS 835 (1019)
Q Consensus 796 Is-~seL~s~~-----~G-e~e~~I~~lF~~Ark~~PsIIfIDEID~ 835 (1019)
+- +.+..-.. +. ............+-+..|.||+|.||-.
T Consensus 252 iEDPvE~~l~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIRD 298 (462)
T PRK10436 252 VEDPVEIPLAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIRD 298 (462)
T ss_pred ecCCccccCCCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCCC
Confidence 42 11211000 11 1112244555566778999999999953
No 403
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.28 E-value=0.0086 Score=69.60 Aligned_cols=69 Identities=23% Similarity=0.293 Sum_probs=45.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecc-ccc-----------hhhhhhHHHHHHHHHHHHHhcCCeEEE
Q 001735 767 GILLFGPPGTGKTLLAKALATEAG-----ANFISITGS-TLT-----------SKWFGDAEKLTKALFSFASKLAPVIIF 829 (1019)
Q Consensus 767 gVLL~GPpGTGKT~LArAIA~elg-----~~fi~Is~s-eL~-----------s~~~Ge~e~~I~~lF~~Ark~~PsIIf 829 (1019)
.+|+.||+|+|||+++++++.+.. ..++.+.-+ ++. ....+............+-+..|.+|+
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I~ 230 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIG 230 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEEe
Confidence 489999999999999999988762 345554321 211 001111112344556667788999999
Q ss_pred eccchh
Q 001735 830 VDEVDS 835 (1019)
Q Consensus 830 IDEID~ 835 (1019)
|.|+-.
T Consensus 231 vGEiRd 236 (372)
T TIGR02525 231 VGEIRD 236 (372)
T ss_pred eCCCCC
Confidence 999954
No 404
>PRK06217 hypothetical protein; Validated
Probab=96.27 E-value=0.0039 Score=64.86 Aligned_cols=31 Identities=29% Similarity=0.410 Sum_probs=28.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001735 767 GILLFGPPGTGKTLLAKALATEAGANFISIT 797 (1019)
Q Consensus 767 gVLL~GPpGTGKT~LArAIA~elg~~fi~Is 797 (1019)
.|+|.|+||+|||++|++|+..++++++.++
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4999999999999999999999999877654
No 405
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.25 E-value=0.0037 Score=64.78 Aligned_cols=33 Identities=48% Similarity=0.715 Sum_probs=27.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 001735 768 ILLFGPPGTGKTLLAKALATEAGANFISITGSTLT 802 (1019)
Q Consensus 768 VLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~ 802 (1019)
|+|.||||+|||++|+.||..+|+.++. ..+++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~--~~~l~ 34 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIS--TGDLL 34 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE--CcHHH
Confidence 8999999999999999999999877654 44443
No 406
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=96.23 E-value=0.26 Score=54.23 Aligned_cols=170 Identities=11% Similarity=0.026 Sum_probs=101.9
Q ss_pred ceEEEEcCCC-ChHHHHHHHHHHHhCC---------cEEEEeccccchhhhh-hHHHHHHHHHHHH----HhcCCeEEEe
Q 001735 766 KGILLFGPPG-TGKTLLAKALATEAGA---------NFISITGSTLTSKWFG-DAEKLTKALFSFA----SKLAPVIIFV 830 (1019)
Q Consensus 766 ~gVLL~GPpG-TGKT~LArAIA~elg~---------~fi~Is~seL~s~~~G-e~e~~I~~lF~~A----rk~~PsIIfI 830 (1019)
+..||.|..+ +||..++.-++..+-. .+..+....-..+... -.-..++.+-..+ .....-|++|
T Consensus 16 hAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViII 95 (263)
T PRK06581 16 NSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAII 95 (263)
T ss_pred heeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEEEE
Confidence 6799999998 9999998888877622 2333332210000000 0123344443333 3334579999
Q ss_pred ccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHhhCCCCcccCCCCHHHHHHHHH
Q 001735 831 DEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILR 910 (1019)
Q Consensus 831 DEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk 910 (1019)
+++|.|.. ...|.||..++. +...+++|.+|..+..+.+.+++|+ ..+.++.|+...-.+++.
T Consensus 96 ~~ae~mt~------------~AANALLKtLEE----PP~~t~fILit~~~~~LLpTIrSRC-q~i~~~~p~~~~~~e~~~ 158 (263)
T PRK06581 96 YSAELMNL------------NAANSCLKILED----APKNSYIFLITSRAASIISTIRSRC-FKINVRSSILHAYNELYS 158 (263)
T ss_pred echHHhCH------------HHHHHHHHhhcC----CCCCeEEEEEeCChhhCchhHhhce-EEEeCCCCCHHHHHHHHH
Confidence 99999842 235677777765 3346777778888999999999999 688899998887777777
Q ss_pred HHHhccCCCCccCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 001735 911 IFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLE 956 (1019)
Q Consensus 911 ~~L~~~~l~~dvdl~~LA~~TeG~SgaDL~~L~~~Aa~~Airr~l~ 956 (1019)
..+.... .+..++.|.+.+. -...+... ..++.+.-+.++++
T Consensus 159 ~~~~p~~--~~~~l~~i~~~~~-~d~~~w~~-~~~~~~~~~~~~~~ 200 (263)
T PRK06581 159 QFIQPIA--DNKTLDFINRFTT-KDRELWLD-FIDNLLLLMNRILK 200 (263)
T ss_pred Hhccccc--ccHHHHHHHHHhh-hhHHHHHH-HHHHHHHHHHHHHH
Confidence 6655433 2333555555432 11122111 23445555555544
No 407
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.23 E-value=0.026 Score=72.98 Aligned_cols=141 Identities=21% Similarity=0.265 Sum_probs=80.3
Q ss_pred CCCceEEEEcCCCChHHHHH-HHHHHHhCCcEEEEeccccchhhhhhHHHHHHHHHHHHHhc--------------CCeE
Q 001735 763 RPCKGILLFGPPGTGKTLLA-KALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKL--------------APVI 827 (1019)
Q Consensus 763 ~p~~gVLL~GPpGTGKT~LA-rAIA~elg~~fi~Is~seL~s~~~Ge~e~~I~~lF~~Ark~--------------~PsI 827 (1019)
...++++++||||+|||+|. -++-.++-..++.++-+.-.. ++..+..+-+..... .--|
T Consensus 1492 nt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~-----T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lV 1566 (3164)
T COG5245 1492 NTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTM-----TPSKLSVLERETEYYPNTGVVRLYPKPVVKDLV 1566 (3164)
T ss_pred hccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccC-----CHHHHHHHHhhceeeccCCeEEEccCcchhheE
Confidence 34588999999999999964 566677766776666543211 111222221111111 1249
Q ss_pred EEeccchhhhhccCCCch---hHHHHHHHHH------HHhhhccccccCCCcEEEEEecCCCCCCc-----HHHHhhCCC
Q 001735 828 IFVDEVDSLLGARGGAFE---HEATRRMRNE------FMSAWDGLRSKESQKILILGATNRPFDLD-----DAVIRRLPR 893 (1019)
Q Consensus 828 IfIDEID~L~~~r~~~~~---~e~~~ril~~------LL~~Ldgl~~~~~~~VLVIaTTN~p~~LD-----~aLlrRFd~ 893 (1019)
||.|||+ | +....-.. --+.+.++.. +-..|-. -.++++.|++|++.+.- +.++|+- .
T Consensus 1567 LFcDeIn-L-p~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvT-----I~~i~l~Gacnp~td~gRv~~~eRf~r~~-v 1638 (3164)
T COG5245 1567 LFCDEIN-L-PYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVT-----ICGIILYGACNPGTDEGRVKYYERFIRKP-V 1638 (3164)
T ss_pred EEeeccC-C-ccccccCCCceEEeeHHHHHhcccccchhhhHhh-----hcceEEEccCCCCCCcccCccHHHHhcCc-e
Confidence 9999998 3 22211100 0111222211 1122211 24789999999987633 4555543 4
Q ss_pred CcccCCCCHHHHHHHHHHHHhcc
Q 001735 894 RIYVDLPDAENRMKILRIFLAHE 916 (1019)
Q Consensus 894 ~I~V~lPd~eeR~eILk~~L~~~ 916 (1019)
.+.+..|.......|...++...
T Consensus 1639 ~vf~~ype~~SL~~Iyea~l~~s 1661 (3164)
T COG5245 1639 FVFCCYPELASLRNIYEAVLMGS 1661 (3164)
T ss_pred EEEecCcchhhHHHHHHHHHHHH
Confidence 57788999999999988877643
No 408
>PRK05973 replicative DNA helicase; Provisional
Probab=96.20 E-value=0.029 Score=61.47 Aligned_cols=38 Identities=45% Similarity=0.525 Sum_probs=30.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 001735 762 LRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGS 799 (1019)
Q Consensus 762 ~~p~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~s 799 (1019)
+.+...+||.|+||+|||+++-.+|.+. |.++++++..
T Consensus 61 l~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 61 LKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 5666789999999999999999887655 7677666654
No 409
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.20 E-value=0.011 Score=66.91 Aligned_cols=70 Identities=33% Similarity=0.390 Sum_probs=46.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEec-cccc-------hhhhhhHHHHHHHHHHHHHhcCCeEEEecc
Q 001735 766 KGILLFGPPGTGKTLLAKALATEA-----GANFISITG-STLT-------SKWFGDAEKLTKALFSFASKLAPVIIFVDE 832 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~el-----g~~fi~Is~-seL~-------s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDE 832 (1019)
.++|+.||+|+|||+++++++... +..++.+.- .++. .-...........++..+.+..|..|++.|
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivGE 212 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVGE 212 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 579999999999999999999886 233333321 1111 000111111456677788889999999999
Q ss_pred chh
Q 001735 833 VDS 835 (1019)
Q Consensus 833 ID~ 835 (1019)
+-.
T Consensus 213 iR~ 215 (299)
T TIGR02782 213 VRG 215 (299)
T ss_pred cCC
Confidence 953
No 410
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.19 E-value=0.061 Score=59.09 Aligned_cols=133 Identities=17% Similarity=0.279 Sum_probs=73.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEeccccchhh--------h------hhHHHHH----HHHHHHHH
Q 001735 762 LRPCKGILLFGPPGTGKTLLAKALATEAGA--NFISITGSTLTSKW--------F------GDAEKLT----KALFSFAS 821 (1019)
Q Consensus 762 ~~p~~gVLL~GPpGTGKT~LArAIA~elg~--~fi~Is~seL~s~~--------~------Ge~e~~I----~~lF~~Ar 821 (1019)
...+-.+++.|++|||||+|+..+...+.- ..+.+-++.....+ . .+.+..+ ..+-..+.
T Consensus 10 ~~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~ 89 (241)
T PF04665_consen 10 LKDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIK 89 (241)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhh
Confidence 334457999999999999999999877632 22222222221111 0 1111111 11111111
Q ss_pred ---h---cCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHhhCCCCc
Q 001735 822 ---K---LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRI 895 (1019)
Q Consensus 822 ---k---~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~LD~aLlrRFd~~I 895 (1019)
. .++.+|++|++.. . ......+..++.. | ..-++.+|..+.....|++.++.-.+..+
T Consensus 90 k~~~~k~~~~~LiIlDD~~~---~-------~~k~~~l~~~~~~--g----RH~~is~i~l~Q~~~~lp~~iR~n~~y~i 153 (241)
T PF04665_consen 90 KSPQKKNNPRFLIILDDLGD---K-------KLKSKILRQFFNN--G----RHYNISIIFLSQSYFHLPPNIRSNIDYFI 153 (241)
T ss_pred hhcccCCCCCeEEEEeCCCC---c-------hhhhHHHHHHHhc--c----cccceEEEEEeeecccCCHHHhhcceEEE
Confidence 1 2368999999742 1 0112334444432 1 12357888888888999999877666555
Q ss_pred ccCCCCHHHHHHHHHH
Q 001735 896 YVDLPDAENRMKILRI 911 (1019)
Q Consensus 896 ~V~lPd~eeR~eILk~ 911 (1019)
.+. -+..+...|++.
T Consensus 154 ~~~-~s~~dl~~i~~~ 168 (241)
T PF04665_consen 154 IFN-NSKRDLENIYRN 168 (241)
T ss_pred Eec-CcHHHHHHHHHh
Confidence 554 355555555543
No 411
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.18 E-value=0.033 Score=59.86 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=20.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 001735 766 KGILLFGPPGTGKTLLAKALAT 787 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~ 787 (1019)
+.++|+||.|+|||++.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6699999999999999999983
No 412
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.17 E-value=0.043 Score=55.19 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=22.3
Q ss_pred ceEEEEcCCCChHHH-HHHHHHHHhC----CcEEEEec
Q 001735 766 KGILLFGPPGTGKTL-LAKALATEAG----ANFISITG 798 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~-LArAIA~elg----~~fi~Is~ 798 (1019)
..+++.||+|+|||. ++..+..... ..++.+.+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p 62 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVP 62 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeC
Confidence 469999999999999 5555555443 33555544
No 413
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.17 E-value=0.011 Score=64.04 Aligned_cols=71 Identities=27% Similarity=0.405 Sum_probs=46.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--C------CcEEEEec-cccchhhhh-------------hHHHHHHHHHHHHHhc
Q 001735 766 KGILLFGPPGTGKTLLAKALATEA--G------ANFISITG-STLTSKWFG-------------DAEKLTKALFSFASKL 823 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~el--g------~~fi~Is~-seL~s~~~G-------------e~e~~I~~lF~~Ark~ 823 (1019)
.+.||.||||+|||+|.+-||.-+ | ..+.-++- +++.+...| ..+-.-..+....+.+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm 217 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSM 217 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhc
Confidence 468999999999999999999876 2 22333433 222211111 1222334455667888
Q ss_pred CCeEEEeccchhh
Q 001735 824 APVIIFVDEVDSL 836 (1019)
Q Consensus 824 ~PsIIfIDEID~L 836 (1019)
.|-||++|||.+.
T Consensus 218 ~PEViIvDEIGt~ 230 (308)
T COG3854 218 SPEVIIVDEIGTE 230 (308)
T ss_pred CCcEEEEeccccH
Confidence 9999999999774
No 414
>PRK13764 ATPase; Provisional
Probab=96.17 E-value=0.0095 Score=72.92 Aligned_cols=70 Identities=24% Similarity=0.323 Sum_probs=41.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEe-cccc-----chhhhhhHHHHHHHHHHHHHhcCCeEEEeccchh
Q 001735 765 CKGILLFGPPGTGKTLLAKALATEAG---ANFISIT-GSTL-----TSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDS 835 (1019)
Q Consensus 765 ~~gVLL~GPpGTGKT~LArAIA~elg---~~fi~Is-~seL-----~s~~~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~ 835 (1019)
..++|++||||+|||++++|++..+. ..+..+. ..++ ...+.. ...........+-+..|.+|++||+-.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~-~~~~~~~~~~~lLR~rPD~IivGEiRd 335 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSK-LEGSMEETADILLLVRPDYTIYDEMRK 335 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEee-ccccHHHHHHHHHhhCCCEEEECCCCC
Confidence 36799999999999999999998873 3332331 1121 111110 000112222233467899999999843
No 415
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.16 E-value=0.0045 Score=61.81 Aligned_cols=28 Identities=46% Similarity=0.780 Sum_probs=25.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001735 768 ILLFGPPGTGKTLLAKALATEAGANFIS 795 (1019)
Q Consensus 768 VLL~GPpGTGKT~LArAIA~elg~~fi~ 795 (1019)
++|.|+||+|||++|+.++..++..++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 7899999999999999999998877654
No 416
>PRK14530 adenylate kinase; Provisional
Probab=96.14 E-value=0.0051 Score=65.67 Aligned_cols=30 Identities=40% Similarity=0.672 Sum_probs=27.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001735 767 GILLFGPPGTGKTLLAKALATEAGANFISI 796 (1019)
Q Consensus 767 gVLL~GPpGTGKT~LArAIA~elg~~fi~I 796 (1019)
.|+|.||||+|||++|+.||..++++++..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 599999999999999999999999887744
No 417
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.10 E-value=0.0087 Score=68.75 Aligned_cols=69 Identities=20% Similarity=0.271 Sum_probs=44.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC----CcEEEEec-cccc---------hhhhhhHHHHHHHHHHHHHhcCCeEEEec
Q 001735 766 KGILLFGPPGTGKTLLAKALATEAG----ANFISITG-STLT---------SKWFGDAEKLTKALFSFASKLAPVIIFVD 831 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~elg----~~fi~Is~-seL~---------s~~~Ge~e~~I~~lF~~Ark~~PsIIfID 831 (1019)
..+||.||+|+|||++.++++..+. ..++.+.- .++. ....+.........+..+-+..|.+|++|
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vg 202 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIG 202 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEe
Confidence 4589999999999999999998764 23443321 1111 00112111223455556677899999999
Q ss_pred cch
Q 001735 832 EVD 834 (1019)
Q Consensus 832 EID 834 (1019)
|+-
T Consensus 203 Eir 205 (343)
T TIGR01420 203 EMR 205 (343)
T ss_pred CCC
Confidence 994
No 418
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=96.09 E-value=0.013 Score=71.77 Aligned_cols=95 Identities=21% Similarity=0.234 Sum_probs=61.7
Q ss_pred CcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecc-cc
Q 001735 726 GVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAG---ANFISITGS-TL 801 (1019)
Q Consensus 726 ~vtfdDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg---~~fi~Is~s-eL 801 (1019)
..+++++|-..+..+.+.+++.. +...||++||+|+|||++..++.++++ .+++.+--+ +.
T Consensus 292 ~~~l~~lg~~~~~~~~l~~~~~~---------------~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~ 356 (564)
T TIGR02538 292 QLDIDKLGFEPDQKALFLEAIHK---------------PQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEI 356 (564)
T ss_pred cCCHHHcCCCHHHHHHHHHHHHh---------------cCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCcee
Confidence 35688898888888888877633 223489999999999999988888774 334443211 11
Q ss_pred c-----hhhhh-hHHHHHHHHHHHHHhcCCeEEEeccchh
Q 001735 802 T-----SKWFG-DAEKLTKALFSFASKLAPVIIFVDEVDS 835 (1019)
Q Consensus 802 ~-----s~~~G-e~e~~I~~lF~~Ark~~PsIIfIDEID~ 835 (1019)
. .-.+. ............+-+..|.||+|.||-.
T Consensus 357 ~~~~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiRd 396 (564)
T TIGR02538 357 NLPGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIRD 396 (564)
T ss_pred cCCCceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCCC
Confidence 1 00011 1112244555666778999999999954
No 419
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.08 E-value=0.065 Score=62.73 Aligned_cols=35 Identities=31% Similarity=0.340 Sum_probs=27.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 001735 765 CKGILLFGPPGTGKTLLAKALATEA---GANFISITGS 799 (1019)
Q Consensus 765 ~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~s 799 (1019)
++.|+|.||+|+|||+++..||..+ |..+..+++.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aD 278 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTD 278 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecC
Confidence 4679999999999999999999876 4455555543
No 420
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.08 E-value=0.0048 Score=63.65 Aligned_cols=34 Identities=24% Similarity=0.363 Sum_probs=28.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 001735 766 KGILLFGPPGTGKTLLAKALATEAGANFISITGS 799 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~s 799 (1019)
+-|+|.|+||+|||++|++++..++.+++.++..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D 36 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVD 36 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCcc
Confidence 4699999999999999999999998777655443
No 421
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.07 E-value=0.049 Score=56.94 Aligned_cols=19 Identities=21% Similarity=0.506 Sum_probs=18.1
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 001735 768 ILLFGPPGTGKTLLAKALA 786 (1019)
Q Consensus 768 VLL~GPpGTGKT~LArAIA 786 (1019)
++|+||.|+|||++.+.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 7899999999999999998
No 422
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.00 E-value=0.0051 Score=62.34 Aligned_cols=28 Identities=46% Similarity=0.781 Sum_probs=24.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001735 768 ILLFGPPGTGKTLLAKALATEAGANFIS 795 (1019)
Q Consensus 768 VLL~GPpGTGKT~LArAIA~elg~~fi~ 795 (1019)
|+|.||+|+|||++|+.+++.++..++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 4789999999999999999999876654
No 423
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.99 E-value=0.047 Score=65.66 Aligned_cols=77 Identities=23% Similarity=0.239 Sum_probs=55.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhh----------------------------hhHH
Q 001735 762 LRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWF----------------------------GDAE 810 (1019)
Q Consensus 762 ~~p~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~----------------------------Ge~e 810 (1019)
+.+...+||.||||+|||+|+..++... |-+.++++..+-..... ...+
T Consensus 260 ~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~ 339 (484)
T TIGR02655 260 FFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLE 339 (484)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChH
Confidence 5666789999999999999999998765 66777776543211100 0125
Q ss_pred HHHHHHHHHHHhcCCeEEEeccchhhhh
Q 001735 811 KLTKALFSFASKLAPVIIFVDEVDSLLG 838 (1019)
Q Consensus 811 ~~I~~lF~~Ark~~PsIIfIDEID~L~~ 838 (1019)
..+..+.+......|.+|+||-+..+..
T Consensus 340 ~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 340 DHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 5667777777788899999999998754
No 424
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.98 E-value=0.0063 Score=63.75 Aligned_cols=33 Identities=42% Similarity=0.780 Sum_probs=26.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 001735 767 GILLFGPPGTGKTLLAKALATEAGANFISITGSTL 801 (1019)
Q Consensus 767 gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL 801 (1019)
.|+|.||||+||||+|+.||+.++ +..++..++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~--i~hlstgd~ 34 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG--LPHLDTGDI 34 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC--CcEEcHhHH
Confidence 489999999999999999999954 445554444
No 425
>PRK08233 hypothetical protein; Provisional
Probab=95.97 E-value=0.04 Score=56.33 Aligned_cols=32 Identities=25% Similarity=0.287 Sum_probs=25.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-CcEEEEe
Q 001735 766 KGILLFGPPGTGKTLLAKALATEAG-ANFISIT 797 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~elg-~~fi~Is 797 (1019)
.-|.|.|+||+|||++|+.|+..++ .+++.++
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d 36 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFD 36 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEEC
Confidence 3478899999999999999999985 4454443
No 426
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.97 E-value=0.046 Score=62.06 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=30.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccc
Q 001735 762 LRPCKGILLFGPPGTGKTLLAKALATEA---------GANFISITGST 800 (1019)
Q Consensus 762 ~~p~~gVLL~GPpGTGKT~LArAIA~el---------g~~fi~Is~se 800 (1019)
+....-++|+||||+|||.++..+|... +..+++++..+
T Consensus 99 i~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 99 IETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred ccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 4556678999999999999999998763 33677777655
No 427
>PF13479 AAA_24: AAA domain
Probab=95.97 E-value=0.03 Score=59.93 Aligned_cols=67 Identities=25% Similarity=0.291 Sum_probs=37.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc-EEEEecccc-chhh-----h-hhHHHHHHHHHHHH--HhcCCeEEEeccchh
Q 001735 766 KGILLFGPPGTGKTLLAKALATEAGAN-FISITGSTL-TSKW-----F-GDAEKLTKALFSFA--SKLAPVIIFVDEVDS 835 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~elg~~-fi~Is~seL-~s~~-----~-Ge~e~~I~~lF~~A--rk~~PsIIfIDEID~ 835 (1019)
..++||||||+|||++|..+ +-+ |+.+..... +..+ . -..-..+.+.+..+ ....-.+|+||.++.
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~----~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis~ 79 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL----PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSISW 79 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC----CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHHH
Confidence 56999999999999999888 222 222322211 0000 0 01222333333322 234567999998877
Q ss_pred h
Q 001735 836 L 836 (1019)
Q Consensus 836 L 836 (1019)
+
T Consensus 80 ~ 80 (213)
T PF13479_consen 80 L 80 (213)
T ss_pred H
Confidence 6
No 428
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.96 E-value=0.052 Score=61.24 Aligned_cols=39 Identities=26% Similarity=0.377 Sum_probs=30.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccc
Q 001735 762 LRPCKGILLFGPPGTGKTLLAKALATEA---------GANFISITGST 800 (1019)
Q Consensus 762 ~~p~~gVLL~GPpGTGKT~LArAIA~el---------g~~fi~Is~se 800 (1019)
+....-++|+||||+|||+++..+|... +..+++++..+
T Consensus 92 i~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 92 IETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 4455668999999999999999998763 23778887655
No 429
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=95.95 E-value=0.0074 Score=61.67 Aligned_cols=32 Identities=34% Similarity=0.575 Sum_probs=28.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001735 766 KGILLFGPPGTGKTLLAKALATEAGANFISIT 797 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is 797 (1019)
..++|.|++|+|||++++.+|..+|.+|+..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 35899999999999999999999999987653
No 430
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=95.95 E-value=0.0057 Score=63.68 Aligned_cols=32 Identities=34% Similarity=0.525 Sum_probs=29.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001735 766 KGILLFGPPGTGKTLLAKALATEAGANFISIT 797 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is 797 (1019)
.+|+|.|++|+|||++.+++|+.++.+|+..+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 56999999999999999999999999998754
No 431
>PRK06547 hypothetical protein; Provisional
Probab=95.95 E-value=0.0072 Score=62.88 Aligned_cols=34 Identities=35% Similarity=0.523 Sum_probs=29.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001735 764 PCKGILLFGPPGTGKTLLAKALATEAGANFISIT 797 (1019)
Q Consensus 764 p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is 797 (1019)
++.-|+|.|++|+|||++|+.++..++.+++.++
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 3456899999999999999999999988877543
No 432
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.95 E-value=0.0076 Score=61.98 Aligned_cols=30 Identities=30% Similarity=0.522 Sum_probs=26.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001735 766 KGILLFGPPGTGKTLLAKALATEAGANFIS 795 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~elg~~fi~ 795 (1019)
.-|+|.||||+|||++++.++..+|+..+.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~ 33 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHLS 33 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 458999999999999999999999876544
No 433
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.94 E-value=0.0074 Score=65.66 Aligned_cols=31 Identities=35% Similarity=0.652 Sum_probs=27.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001735 766 KGILLFGPPGTGKTLLAKALATEAGANFISI 796 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~elg~~fi~I 796 (1019)
..|+|.||||+|||++|+.+|+.+|++++.+
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~ 37 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINM 37 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 4599999999999999999999999877654
No 434
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=95.94 E-value=0.053 Score=57.32 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=20.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 001735 766 KGILLFGPPGTGKTLLAKALAT 787 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~ 787 (1019)
+.++|.||.|+|||+|.+.|+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~~ 50 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLGL 50 (200)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 4599999999999999999983
No 435
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.94 E-value=0.024 Score=58.73 Aligned_cols=76 Identities=26% Similarity=0.365 Sum_probs=43.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh--C-----------CcEEEEeccccchh-----------hhh-h----------
Q 001735 764 PCKGILLFGPPGTGKTLLAKALATEA--G-----------ANFISITGSTLTSK-----------WFG-D---------- 808 (1019)
Q Consensus 764 p~~gVLL~GPpGTGKT~LArAIA~el--g-----------~~fi~Is~seL~s~-----------~~G-e---------- 808 (1019)
+..-++|+||||+|||+++..++..+ | .+++.+++..-... +.. .
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~ 110 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNW 110 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeecccc
Confidence 33458999999999999999998765 1 35667765332100 000 0
Q ss_pred --------------HHHHHHHHHHHHHh-cCCeEEEeccchhhhhc
Q 001735 809 --------------AEKLTKALFSFASK-LAPVIIFVDEVDSLLGA 839 (1019)
Q Consensus 809 --------------~e~~I~~lF~~Ark-~~PsIIfIDEID~L~~~ 839 (1019)
....+..+...+.. ..|.+|+||.+..+...
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 111 GCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp -EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred ccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 01223455555666 57899999999999865
No 436
>PRK14528 adenylate kinase; Provisional
Probab=95.91 E-value=0.0072 Score=63.32 Aligned_cols=31 Identities=42% Similarity=0.634 Sum_probs=27.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001735 766 KGILLFGPPGTGKTLLAKALATEAGANFISI 796 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~elg~~fi~I 796 (1019)
+.|+|.||||+|||++|+.+|..+|++.+.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 4589999999999999999999999877653
No 437
>PTZ00202 tuzin; Provisional
Probab=95.90 E-value=0.092 Score=62.06 Aligned_cols=59 Identities=12% Similarity=0.137 Sum_probs=45.3
Q ss_pred ccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 001735 730 DDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGS 799 (1019)
Q Consensus 730 dDIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~s 799 (1019)
.+..|.+.....|...+... . ...+.-++|.||+|||||+|++.++..++.+.+.++..
T Consensus 262 ~~FVGReaEla~Lr~VL~~~----------d-~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 262 RQFVSREAEESWVRQVLRRL----------D-TAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred cCCCCcHHHHHHHHHHHhcc----------C-CCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 46789999999998877431 1 12234688999999999999999999998776666654
No 438
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.90 E-value=0.067 Score=56.55 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=20.2
Q ss_pred CceEEEEcCCCChHHHHHHHHH
Q 001735 765 CKGILLFGPPGTGKTLLAKALA 786 (1019)
Q Consensus 765 ~~gVLL~GPpGTGKT~LArAIA 786 (1019)
...++|.||.|+|||++.+.|+
T Consensus 29 ~~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 29 GRLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred CeEEEEECCCCCccHHHHHHHH
Confidence 3569999999999999999998
No 439
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.87 E-value=0.018 Score=66.11 Aligned_cols=71 Identities=27% Similarity=0.335 Sum_probs=47.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC--CcEEEE-eccccch-----------hh--hhhHHHHHHHHHHHHHhcCCeEE
Q 001735 765 CKGILLFGPPGTGKTLLAKALATEAG--ANFISI-TGSTLTS-----------KW--FGDAEKLTKALFSFASKLAPVII 828 (1019)
Q Consensus 765 ~~gVLL~GPpGTGKT~LArAIA~elg--~~fi~I-s~seL~s-----------~~--~Ge~e~~I~~lF~~Ark~~PsII 828 (1019)
..+||+.|++|+|||++++|++.... ..++.+ +..++.- .. .+...-....+...+.+..|..|
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~I 239 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDRI 239 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCeE
Confidence 36799999999999999999998874 233333 1112210 00 11122345677788889999999
Q ss_pred Eeccchh
Q 001735 829 FVDEVDS 835 (1019)
Q Consensus 829 fIDEID~ 835 (1019)
++.|+-.
T Consensus 240 ivGEiR~ 246 (332)
T PRK13900 240 IVGELRG 246 (332)
T ss_pred EEEecCC
Confidence 9999953
No 440
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.83 E-value=0.074 Score=66.49 Aligned_cols=161 Identities=21% Similarity=0.218 Sum_probs=91.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh--CCcEEEEeccccchh--------------hh---h-------------hHHH
Q 001735 764 PCKGILLFGPPGTGKTLLAKALATEA--GANFISITGSTLTSK--------------WF---G-------------DAEK 811 (1019)
Q Consensus 764 p~~gVLL~GPpGTGKT~LArAIA~el--g~~fi~Is~seL~s~--------------~~---G-------------e~e~ 811 (1019)
..+-+||.-|.|.|||+++...+... +..+..+++.+--++ +. + ..+.
T Consensus 36 ~~RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~ 115 (894)
T COG2909 36 DYRLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLES 115 (894)
T ss_pred CceEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHH
Confidence 34669999999999999999998643 555555554332111 00 1 1223
Q ss_pred HHHHHHHH-HHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEec-CCCCCCcHHHHh
Q 001735 812 LTKALFSF-ASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGAT-NRPFDLDDAVIR 889 (1019)
Q Consensus 812 ~I~~lF~~-Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTT-N~p~~LD~aLlr 889 (1019)
.+..+|.+ +....|..+||||.+.+.. .....-+.-|+... ..++.+|.+| ++|.- .-+=+|
T Consensus 116 l~~~L~~Ela~~~~pl~LVlDDyHli~~--------~~l~~~l~fLl~~~-------P~~l~lvv~SR~rP~l-~la~lR 179 (894)
T COG2909 116 LLSSLLNELASYEGPLYLVLDDYHLISD--------PALHEALRFLLKHA-------PENLTLVVTSRSRPQL-GLARLR 179 (894)
T ss_pred HHHHHHHHHHhhcCceEEEeccccccCc--------ccHHHHHHHHHHhC-------CCCeEEEEEeccCCCC-ccccee
Confidence 45556654 4455799999999998732 23334444554432 3456666666 44432 211111
Q ss_pred hCCCCcccCC----CCHHHHHHHHHHHHhccCCCCccCHHHHHHHhcCCCHH-HHHHH
Q 001735 890 RLPRRIYVDL----PDAENRMKILRIFLAHESLESGFQFNELANATEGYSGS-DLKNL 942 (1019)
Q Consensus 890 RFd~~I~V~l----Pd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeG~Sga-DL~~L 942 (1019)
-=+..+.+.. .+.++-.+++..... ..+ +..+++.|-..|+|+..+ .|..+
T Consensus 180 lr~~llEi~~~~Lrf~~eE~~~fl~~~~~-l~L-d~~~~~~L~~~teGW~~al~L~aL 235 (894)
T COG2909 180 LRDELLEIGSEELRFDTEEAAAFLNDRGS-LPL-DAADLKALYDRTEGWAAALQLIAL 235 (894)
T ss_pred ehhhHHhcChHhhcCChHHHHHHHHHcCC-CCC-ChHHHHHHHhhcccHHHHHHHHHH
Confidence 0011222221 467777788775442 122 345688888889988654 44444
No 441
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.83 E-value=0.14 Score=58.50 Aligned_cols=36 Identities=31% Similarity=0.347 Sum_probs=28.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 001735 764 PCKGILLFGPPGTGKTLLAKALATEA---GANFISITGS 799 (1019)
Q Consensus 764 p~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~s 799 (1019)
++.-++|.||+|+|||+++..+|..+ +..+.-+++.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D 151 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGD 151 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 45678899999999999999999876 4555555543
No 442
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.81 E-value=0.026 Score=57.13 Aligned_cols=34 Identities=32% Similarity=0.567 Sum_probs=28.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 001735 768 ILLFGPPGTGKTLLAKALATEA---GANFISITGSTL 801 (1019)
Q Consensus 768 VLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL 801 (1019)
++|.|+||+|||++|+.++..+ +.+.+.++...+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~ 38 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV 38 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 7899999999999999999998 666776665433
No 443
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.81 E-value=0.05 Score=68.43 Aligned_cols=77 Identities=22% Similarity=0.213 Sum_probs=50.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHH---hCCcEEEEeccccch-h---------------hhhhHHHHHHHHHHHHHh
Q 001735 762 LRPCKGILLFGPPGTGKTLLAKALATE---AGANFISITGSTLTS-K---------------WFGDAEKLTKALFSFASK 822 (1019)
Q Consensus 762 ~~p~~gVLL~GPpGTGKT~LArAIA~e---lg~~fi~Is~seL~s-~---------------~~Ge~e~~I~~lF~~Ark 822 (1019)
+.+...++|+||||+|||+|+..++.. .|-.+++++..+-.. . .....+..+..+-...+.
T Consensus 57 ip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~ 136 (790)
T PRK09519 57 LPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRS 136 (790)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhc
Confidence 556677999999999999999765543 366777776654221 0 011223333333333455
Q ss_pred cCCeEEEeccchhhhh
Q 001735 823 LAPVIIFVDEVDSLLG 838 (1019)
Q Consensus 823 ~~PsIIfIDEID~L~~ 838 (1019)
..+.+|+||-|..+..
T Consensus 137 ~~~~LVVIDSI~aL~~ 152 (790)
T PRK09519 137 GALDIVVIDSVAALVP 152 (790)
T ss_pred CCCeEEEEcchhhhcc
Confidence 6799999999999885
No 444
>PRK13946 shikimate kinase; Provisional
Probab=95.81 E-value=0.0077 Score=62.86 Aligned_cols=32 Identities=31% Similarity=0.561 Sum_probs=29.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001735 766 KGILLFGPPGTGKTLLAKALATEAGANFISIT 797 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is 797 (1019)
+.|+|.|++|+|||++++.+|+.+|++|+..+
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 56999999999999999999999999998765
No 445
>PLN02200 adenylate kinase family protein
Probab=95.79 E-value=0.0095 Score=64.94 Aligned_cols=39 Identities=18% Similarity=0.325 Sum_probs=31.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch
Q 001735 763 RPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS 803 (1019)
Q Consensus 763 ~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s 803 (1019)
+.+..|+|.||||+|||++|+.+|.++|++ .+++.+++.
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR 79 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLR 79 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHH
Confidence 344668999999999999999999999875 466666654
No 446
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=95.77 E-value=0.014 Score=66.23 Aligned_cols=36 Identities=31% Similarity=0.506 Sum_probs=32.2
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001735 761 LLRPCKGILLFGPPGTGKTLLAKALATEAGANFISI 796 (1019)
Q Consensus 761 l~~p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~I 796 (1019)
...+...|+|.|++|+|||++++.+|..+|++|+.+
T Consensus 129 ~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~ 164 (309)
T PRK08154 129 RAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVEL 164 (309)
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeH
Confidence 356778899999999999999999999999999953
No 447
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.067 Score=62.30 Aligned_cols=98 Identities=21% Similarity=0.307 Sum_probs=68.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh--CCcEEEEeccccchhh------hh--------hHHHHHHHHHHHHHhcCC
Q 001735 762 LRPCKGILLFGPPGTGKTLLAKALATEA--GANFISITGSTLTSKW------FG--------DAEKLTKALFSFASKLAP 825 (1019)
Q Consensus 762 ~~p~~gVLL~GPpGTGKT~LArAIA~el--g~~fi~Is~seL~s~~------~G--------e~e~~I~~lF~~Ark~~P 825 (1019)
+-|..-+||-|.||.|||+|.-.+|..+ ..++++++..+-.... .+ -.+..+..+.......+|
T Consensus 90 ~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p 169 (456)
T COG1066 90 LVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKP 169 (456)
T ss_pred cccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCC
Confidence 4566679999999999999998888776 2379999887643322 11 245667888888888999
Q ss_pred eEEEeccchhhhhccCC--CchhHHHHHHHHHHHhh
Q 001735 826 VIIFVDEVDSLLGARGG--AFEHEATRRMRNEFMSA 859 (1019)
Q Consensus 826 sIIfIDEID~L~~~r~~--~~~~e~~~ril~~LL~~ 859 (1019)
.+++||-|..+....-. +..-...+....+|+..
T Consensus 170 ~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~ 205 (456)
T COG1066 170 DLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRL 205 (456)
T ss_pred CEEEEeccceeecccccCCCCcHHHHHHHHHHHHHH
Confidence 99999999999765422 22233344555555543
No 448
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.75 E-value=0.02 Score=61.36 Aligned_cols=23 Identities=52% Similarity=0.683 Sum_probs=19.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001735 767 GILLFGPPGTGKTLLAKALATEA 789 (1019)
Q Consensus 767 gVLL~GPpGTGKT~LArAIA~el 789 (1019)
-+.+.||+|||||+||-+.|.++
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 48999999999999999999766
No 449
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=95.74 E-value=0.007 Score=52.86 Aligned_cols=35 Identities=31% Similarity=0.784 Sum_probs=30.5
Q ss_pred cCCCHHHHHHHHHhhCCCcccchhcHHHHHHHHHHhC
Q 001735 971 RPLKLEDFIQSKAKVGPSVAYDAASMNELRKWNEQYG 1007 (1019)
Q Consensus 971 ~pLT~eDF~~Al~kv~PS~s~~~~~m~~lvkW~digG 1007 (1019)
.+|+++||..|+++++||++.+ .+..+.+|+..||
T Consensus 28 p~it~~DF~~Al~~~kpSVs~~--dl~~ye~w~~~FG 62 (62)
T PF09336_consen 28 PPITMEDFEEALKKVKPSVSQE--DLKKYEEWTKEFG 62 (62)
T ss_dssp HHBCHHHHHHHHHTCGGSS-HH--HHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcC
Confidence 4799999999999999999865 4678999999998
No 450
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.74 E-value=0.0098 Score=61.61 Aligned_cols=33 Identities=30% Similarity=0.601 Sum_probs=29.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 001735 766 KGILLFGPPGTGKTLLAKALATEAGANFISITG 798 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~ 798 (1019)
..|+|.||+|+|||++++.+|..++.+++..+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 469999999999999999999999999877653
No 451
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.73 E-value=0.0084 Score=61.73 Aligned_cols=28 Identities=43% Similarity=0.710 Sum_probs=26.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001735 768 ILLFGPPGTGKTLLAKALATEAGANFIS 795 (1019)
Q Consensus 768 VLL~GPpGTGKT~LArAIA~elg~~fi~ 795 (1019)
|-+.||||||||++|+.||.++|.++++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 6789999999999999999999999986
No 452
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.73 E-value=0.036 Score=59.28 Aligned_cols=22 Identities=59% Similarity=0.837 Sum_probs=21.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHh
Q 001735 768 ILLFGPPGTGKTLLAKALATEA 789 (1019)
Q Consensus 768 VLL~GPpGTGKT~LArAIA~el 789 (1019)
|+|+|+||+|||++|+.+|+++
T Consensus 4 iIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHH
Confidence 8999999999999999999998
No 453
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.73 E-value=0.0084 Score=63.77 Aligned_cols=29 Identities=45% Similarity=0.752 Sum_probs=26.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001735 768 ILLFGPPGTGKTLLAKALATEAGANFISI 796 (1019)
Q Consensus 768 VLL~GPpGTGKT~LArAIA~elg~~fi~I 796 (1019)
|+|.||||+|||++|+.||..+|++.+.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 89999999999999999999998777653
No 454
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.73 E-value=0.033 Score=62.17 Aligned_cols=68 Identities=26% Similarity=0.372 Sum_probs=36.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccch---hhh-hhHHHHHHHHH----HHHHhcCCeEEEeccchhh
Q 001735 768 ILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTS---KWF-GDAEKLTKALF----SFASKLAPVIIFVDEVDSL 836 (1019)
Q Consensus 768 VLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~s---~~~-Ge~e~~I~~lF----~~Ark~~PsIIfIDEID~L 836 (1019)
|+|+|.||+|||++|+.|+..+ +..++.++-..+.- .|. ...++.++..+ ..+- ....||++|+...+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~l-s~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERAL-SKDTIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHH-TT-SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhh-ccCeEEEEeCCchH
Confidence 8999999999999999999875 56777776444321 121 22344444333 3322 23479999998776
No 455
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.72 E-value=0.03 Score=66.53 Aligned_cols=98 Identities=16% Similarity=0.287 Sum_probs=65.3
Q ss_pred CCeEEEEcCchhhhhcccCCccHHHHHHHHHHHHhcCCCCEEEEecccCCCCCccccccccccccccccccCCCCchhhh
Q 001735 485 QPLIVYFPDSSLWLSRAVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPNFGRLAKLPLPLQRL 564 (1019)
Q Consensus 485 ~p~Iiff~eid~~~~~~~~~~~~~~~~s~~~~~l~~l~g~v~vI~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 564 (1019)
.+.+|++|||+.+... ...++.++.+|..+.+. |..+||++++.|. +
T Consensus 211 ~~dlLiiDDi~~l~~~---~~~~~~l~~~~n~l~~~--~~~iiits~~~p~----~------------------------ 257 (450)
T PRK00149 211 SVDVLLIDDIQFLAGK---ERTQEEFFHTFNALHEA--GKQIVLTSDRPPK----E------------------------ 257 (450)
T ss_pred cCCEEEEehhhhhcCC---HHHHHHHHHHHHHHHHC--CCcEEEECCCCHH----H------------------------
Confidence 5779999999987532 12345777777776654 5556665554332 0
Q ss_pred hcccccCCCcchHHHHhccc--ceEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001735 565 TEGLKATKRSDDNEIYNLFT--NVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHK 623 (1019)
Q Consensus 565 vIGmTNR~d~iDeaL~rrFe--~~~eI~LPdee~Rl~Il~Iht~k~~~~~~~~~~v~~l~~ 623 (1019)
.+.++++|..||. ..++|.+||.+.|.+|++..... ......++-++.|+.
T Consensus 258 -------l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~-~~~~l~~e~l~~ia~ 310 (450)
T PRK00149 258 -------LPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEE-EGIDLPDEVLEFIAK 310 (450)
T ss_pred -------HHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHH-cCCCCCHHHHHHHHc
Confidence 0226788898996 58999999999999999988543 233334444555544
No 456
>PRK02496 adk adenylate kinase; Provisional
Probab=95.71 E-value=0.0096 Score=61.72 Aligned_cols=30 Identities=37% Similarity=0.579 Sum_probs=26.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001735 767 GILLFGPPGTGKTLLAKALATEAGANFISI 796 (1019)
Q Consensus 767 gVLL~GPpGTGKT~LArAIA~elg~~fi~I 796 (1019)
.++|.||||+|||++|+.||..++++.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 489999999999999999999999876653
No 457
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.69 E-value=0.043 Score=69.11 Aligned_cols=101 Identities=21% Similarity=0.320 Sum_probs=57.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---C--CcEEEEecccc----chhhhhhHHHHHHHHHHHH----------HhcCCeE
Q 001735 767 GILLFGPPGTGKTLLAKALATEA---G--ANFISITGSTL----TSKWFGDAEKLTKALFSFA----------SKLAPVI 827 (1019)
Q Consensus 767 gVLL~GPpGTGKT~LArAIA~el---g--~~fi~Is~seL----~s~~~Ge~e~~I~~lF~~A----------rk~~PsI 827 (1019)
-++|.|+||||||++++++...+ + .+++-+.+..- +....|.....+..++... ......+
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~l 419 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCDL 419 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCCE
Confidence 48999999999999999997655 4 34443332211 1111222223344444321 1134579
Q ss_pred EEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCc
Q 001735 828 IFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLD 884 (1019)
Q Consensus 828 IfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~LD 884 (1019)
|+|||+..+. ..++..|+.. + ..+.+++++|-.+....+.
T Consensus 420 lIvDEaSMvd------------~~~~~~Ll~~---~--~~~~rlilvGD~~QLpsV~ 459 (720)
T TIGR01448 420 LIVDESSMMD------------TWLALSLLAA---L--PDHARLLLVGDTDQLPSVG 459 (720)
T ss_pred EEEeccccCC------------HHHHHHHHHh---C--CCCCEEEEECccccccCCC
Confidence 9999997662 1223344433 2 2356788888776655444
No 458
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.68 E-value=0.019 Score=65.98 Aligned_cols=23 Identities=57% Similarity=0.677 Sum_probs=21.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001735 767 GILLFGPPGTGKTLLAKALATEA 789 (1019)
Q Consensus 767 gVLL~GPpGTGKT~LArAIA~el 789 (1019)
-+++.|.||||||.||-.++.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 48899999999999999999988
No 459
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.64 E-value=0.009 Score=57.08 Aligned_cols=22 Identities=50% Similarity=0.670 Sum_probs=21.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHh
Q 001735 768 ILLFGPPGTGKTLLAKALATEA 789 (1019)
Q Consensus 768 VLL~GPpGTGKT~LArAIA~el 789 (1019)
|+|.|+||+|||++|+.|+.++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 460
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.64 E-value=0.063 Score=61.13 Aligned_cols=78 Identities=23% Similarity=0.250 Sum_probs=48.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccccch-hh-------hh----------------h
Q 001735 762 LRPCKGILLFGPPGTGKTLLAKALATEA---------GANFISITGSTLTS-KW-------FG----------------D 808 (1019)
Q Consensus 762 ~~p~~gVLL~GPpGTGKT~LArAIA~el---------g~~fi~Is~seL~s-~~-------~G----------------e 808 (1019)
+.+..-+.|+||||+|||.|+..+|-.. +..+++++...-+. .. .+ .
T Consensus 93 i~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~i~~~~~~~ 172 (313)
T TIGR02238 93 IESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYARAYT 172 (313)
T ss_pred CcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCcEEEecCCC
Confidence 5566678999999999999998877432 45677777654210 00 00 1
Q ss_pred HHH---HHHHHHHHHHhcCCeEEEeccchhhhhc
Q 001735 809 AEK---LTKALFSFASKLAPVIIFVDEVDSLLGA 839 (1019)
Q Consensus 809 ~e~---~I~~lF~~Ark~~PsIIfIDEID~L~~~ 839 (1019)
.+. .+..+-.......+.+|+||-|-.++..
T Consensus 173 ~e~~~~~l~~l~~~i~~~~~~LvVIDSisal~r~ 206 (313)
T TIGR02238 173 SEHQMELLDYLAAKFSEEPFRLLIVDSIMALFRV 206 (313)
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEEcchHhhhh
Confidence 111 1222222333457899999999988643
No 461
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.63 E-value=0.019 Score=59.96 Aligned_cols=70 Identities=34% Similarity=0.444 Sum_probs=44.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecc-ccchh---h----------hhhHHHHHHHHHHHHHhcCCeEE
Q 001735 765 CKGILLFGPPGTGKTLLAKALATEAG--ANFISITGS-TLTSK---W----------FGDAEKLTKALFSFASKLAPVII 828 (1019)
Q Consensus 765 ~~gVLL~GPpGTGKT~LArAIA~elg--~~fi~Is~s-eL~s~---~----------~Ge~e~~I~~lF~~Ark~~PsII 828 (1019)
...++|.||+|+|||+++++++.... ...+.+... ++... + .+........++..+.+..|.+|
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i 104 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRI 104 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEE
Confidence 35799999999999999999998763 222222111 11000 0 01112345566667777889999
Q ss_pred Eeccch
Q 001735 829 FVDEVD 834 (1019)
Q Consensus 829 fIDEID 834 (1019)
++.|+-
T Consensus 105 ~igEir 110 (186)
T cd01130 105 IVGEVR 110 (186)
T ss_pred EEEccC
Confidence 999994
No 462
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.63 E-value=0.0099 Score=63.44 Aligned_cols=30 Identities=43% Similarity=0.702 Sum_probs=26.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001735 767 GILLFGPPGTGKTLLAKALATEAGANFISI 796 (1019)
Q Consensus 767 gVLL~GPpGTGKT~LArAIA~elg~~fi~I 796 (1019)
.|+|+||||+|||++|+.||..+|++.+.+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 389999999999999999999999766653
No 463
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.62 E-value=0.1 Score=56.27 Aligned_cols=98 Identities=13% Similarity=0.276 Sum_probs=57.4
Q ss_pred CCeEEEEcCchhhhhcccCCccHHHHHHHHHHHHhcCCCCEEEEecccCCCCCccccccccccccccccccCCCCchhhh
Q 001735 485 QPLIVYFPDSSLWLSRAVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPNFGRLAKLPLPLQRL 564 (1019)
Q Consensus 485 ~p~Iiff~eid~~~~~~~~~~~~~~~~s~~~~~l~~l~g~v~vI~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 564 (1019)
..-+|+||||+.+... ...++.+..++..+.+. |+-+||++...|+.-
T Consensus 97 ~~DlL~iDDi~~l~~~---~~~q~~lf~l~n~~~~~--~k~li~ts~~~P~~l--------------------------- 144 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGK---QRTQEELFHLFNRLIES--GKQLILTSDRPPSEL--------------------------- 144 (219)
T ss_dssp TSSEEEEETGGGGTTH---HHHHHHHHHHHHHHHHT--TSEEEEEESS-TTTT---------------------------
T ss_pred cCCEEEEecchhhcCc---hHHHHHHHHHHHHHHhh--CCeEEEEeCCCCccc---------------------------
Confidence 4567888999887533 12456777766665544 666776666555411
Q ss_pred hcccccCCCcchHHHHhcccc--eEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001735 565 TEGLKATKRSDDNEIYNLFTN--VLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHK 623 (1019)
Q Consensus 565 vIGmTNR~d~iDeaL~rrFe~--~~eI~LPdee~Rl~Il~Iht~k~~~~~~~~~~v~~l~~ 623 (1019)
..+++.|..||.- .++|.+||++.|.+|++.... .+.....++-++.|+.
T Consensus 145 --------~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~-~~~~~l~~~v~~~l~~ 196 (219)
T PF00308_consen 145 --------SGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAK-ERGIELPEEVIEYLAR 196 (219)
T ss_dssp --------TTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHH-HTT--S-HHHHHHHHH
T ss_pred --------cccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHH-HhCCCCcHHHHHHHHH
Confidence 2356778777655 899999999999999987743 3444444444544444
No 464
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=95.61 E-value=0.044 Score=65.71 Aligned_cols=167 Identities=25% Similarity=0.306 Sum_probs=95.4
Q ss_pred cccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE---------EEEecccc
Q 001735 731 DIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANF---------ISITGSTL 801 (1019)
Q Consensus 731 DIgGle~vk~~L~e~V~~pL~~pelf~~~gl~~p~~gVLL~GPpGTGKT~LArAIA~elg~~f---------i~Is~seL 801 (1019)
.|-|.+.+|++|.-++.--.. ....++.-++.--+|||.|.|-+.|+-|.+.+.+..-..+ +-++++-.
T Consensus 302 SI~GH~~vKkAillLLlGGvE--k~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVT 379 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLGGVE--KNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVT 379 (818)
T ss_pred ccccHHHHHHHHHHHHhccce--eccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEe
Confidence 367899999998766533211 1222343355556799999999999999999988652221 11111111
Q ss_pred chhhhhhHHHHHH-HHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhh------ccccccCCCcEEEE
Q 001735 802 TSKWFGDAEKLTK-ALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAW------DGLRSKESQKILIL 874 (1019)
Q Consensus 802 ~s~~~Ge~e~~I~-~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~L------dgl~~~~~~~VLVI 874 (1019)
...-.| |+.+. ...-.| ...|++|||+|.+..- + +..+.+.|.+- -|+...-+.+.-||
T Consensus 380 tD~eTG--ERRLEAGAMVLA---DRGVVCIDEFDKMsDi-----D----RvAIHEVMEQqtVTIaKAGIHasLNARCSVl 445 (818)
T KOG0479|consen 380 TDQETG--ERRLEAGAMVLA---DRGVVCIDEFDKMSDI-----D----RVAIHEVMEQQTVTIAKAGIHASLNARCSVL 445 (818)
T ss_pred eccccc--hhhhhcCceEEc---cCceEEehhcccccch-----h----HHHHHHHHhcceEEeEeccchhhhccceeee
Confidence 111122 22221 111122 2379999999998422 1 22233333221 24555556788899
Q ss_pred EecCCCCC-------------CcHHHHhhCCCCccc-CCCCHHHHHHHHHHHH
Q 001735 875 GATNRPFD-------------LDDAVIRRLPRRIYV-DLPDAENRMKILRIFL 913 (1019)
Q Consensus 875 aTTN~p~~-------------LD~aLlrRFd~~I~V-~lPd~eeR~eILk~~L 913 (1019)
|+.|+.+- |++.+++||+..+.+ .--+.+.-..|-.+.+
T Consensus 446 AAANPvyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv~lD~~d~~~D~~iSeHVL 498 (818)
T KOG0479|consen 446 AAANPVYGQYDQSKTPMENIGLPDSLLSRFDLLFVVLDDIDADIDRMISEHVL 498 (818)
T ss_pred eecCccccccCCCCChhhccCCcHHHHhhhcEEEEEeccccchHHHHHHHHHH
Confidence 99996543 778999999866554 3344444444444433
No 465
>PRK04040 adenylate kinase; Provisional
Probab=95.60 E-value=0.012 Score=61.93 Aligned_cols=31 Identities=23% Similarity=0.385 Sum_probs=26.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh--CCcEEE
Q 001735 765 CKGILLFGPPGTGKTLLAKALATEA--GANFIS 795 (1019)
Q Consensus 765 ~~gVLL~GPpGTGKT~LArAIA~el--g~~fi~ 795 (1019)
+..|+|+|+||+|||++++.++..+ +..++.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~ 34 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVN 34 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEe
Confidence 3569999999999999999999999 666543
No 466
>PRK14527 adenylate kinase; Provisional
Probab=95.59 E-value=0.01 Score=62.13 Aligned_cols=32 Identities=41% Similarity=0.645 Sum_probs=27.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001735 764 PCKGILLFGPPGTGKTLLAKALATEAGANFIS 795 (1019)
Q Consensus 764 p~~gVLL~GPpGTGKT~LArAIA~elg~~fi~ 795 (1019)
.+.-|++.||||+|||++|+.+|..+++..+.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is 36 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLS 36 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 34569999999999999999999999876544
No 467
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.58 E-value=0.087 Score=60.79 Aligned_cols=80 Identities=23% Similarity=0.191 Sum_probs=48.6
Q ss_pred CCCCCCCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccccch-h-------hh---------------
Q 001735 759 GNLLRPCKGILLFGPPGTGKTLLAKALATEA---------GANFISITGSTLTS-K-------WF--------------- 806 (1019)
Q Consensus 759 ~gl~~p~~gVLL~GPpGTGKT~LArAIA~el---------g~~fi~Is~seL~s-~-------~~--------------- 806 (1019)
+| +....-..|+||||||||.|+..+|-.. +..+++++...-+. . .+
T Consensus 121 GG-i~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~ 199 (344)
T PLN03187 121 GG-IETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYAR 199 (344)
T ss_pred CC-CCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEec
Confidence 44 4555668899999999999999887432 24677777644100 0 00
Q ss_pred -hhHH---HHHHHHHHHHHhcCCeEEEeccchhhhhc
Q 001735 807 -GDAE---KLTKALFSFASKLAPVIIFVDEVDSLLGA 839 (1019)
Q Consensus 807 -Ge~e---~~I~~lF~~Ark~~PsIIfIDEID~L~~~ 839 (1019)
-..+ ..+..+-.......+.+|+||-|-.++..
T Consensus 200 ~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSital~r~ 236 (344)
T PLN03187 200 AYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRV 236 (344)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHhhhc
Confidence 0111 12222222333456899999999988643
No 468
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=95.57 E-value=0.034 Score=58.74 Aligned_cols=67 Identities=28% Similarity=0.424 Sum_probs=42.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEeccccchhhh---h---------------hHHHHHHHHHHHHHhc
Q 001735 763 RPCKGILLFGPPGTGKTLLAKALATEA-GANFISITGSTLTSKWF---G---------------DAEKLTKALFSFASKL 823 (1019)
Q Consensus 763 ~p~~gVLL~GPpGTGKT~LArAIA~el-g~~fi~Is~seL~s~~~---G---------------e~e~~I~~lF~~Ark~ 823 (1019)
..|.-++|.|+||+|||+++..+...+ +-.++.++..++..... + ........+...+...
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~a~~~ 92 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFHPDYDELLKADPDEASELTQKEASRLAEKLIEYAIEN 92 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 445779999999999999999999988 77888888877643321 1 1223445556666666
Q ss_pred CCeEEE
Q 001735 824 APVIIF 829 (1019)
Q Consensus 824 ~PsIIf 829 (1019)
...|||
T Consensus 93 ~~nii~ 98 (199)
T PF06414_consen 93 RYNIIF 98 (199)
T ss_dssp T--EEE
T ss_pred CCCEEE
Confidence 666764
No 469
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.56 E-value=0.29 Score=54.72 Aligned_cols=36 Identities=31% Similarity=0.410 Sum_probs=28.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 001735 764 PCKGILLFGPPGTGKTLLAKALATEA---GANFISITGS 799 (1019)
Q Consensus 764 p~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~s 799 (1019)
+++.++|.||+|+|||+++..+|..+ |..+.-+++.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 45678889999999999999998876 5566556554
No 470
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.55 E-value=0.032 Score=60.96 Aligned_cols=34 Identities=32% Similarity=0.556 Sum_probs=28.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 001735 768 ILLFGPPGTGKTLLAKALATEA---GANFISITGSTL 801 (1019)
Q Consensus 768 VLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL 801 (1019)
|+|.|+||+|||++|++++..+ +..++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 7899999999999999999987 566777765444
No 471
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.53 E-value=0.19 Score=57.56 Aligned_cols=35 Identities=17% Similarity=0.319 Sum_probs=31.5
Q ss_pred CCceeeccCCChhHHHHHHHHHHHhhcCCcEEEeecC
Q 001735 221 SGRILLRSVPGTELYRERLIRALARELQVPLLVLDSS 257 (1019)
Q Consensus 221 s~rILL~~~pgsE~Yqe~L~kALA~~~~a~LL~lDs~ 257 (1019)
++.|||.|+|| ..+.+||++||+.++.++.-+.-+
T Consensus 64 ~~~ilL~G~pG--tGKTtla~~lA~~l~~~~~rV~~~ 98 (327)
T TIGR01650 64 DRRVMVQGYHG--TGKSTHIEQIAARLNWPCVRVNLD 98 (327)
T ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHCCCeEEEEec
Confidence 46799999999 899999999999999999877764
No 472
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=95.51 E-value=0.37 Score=56.79 Aligned_cols=104 Identities=17% Similarity=0.156 Sum_probs=55.6
Q ss_pred CCcHHHHhhCCCCcccCCCCHHHHHHHHHHHHhccCCC-------------C-----ccCHHHHHHHhcCCCH--HHHHH
Q 001735 882 DLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-------------S-----GFQFNELANATEGYSG--SDLKN 941 (1019)
Q Consensus 882 ~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-------------~-----dvdl~~LA~~TeG~Sg--aDL~~ 941 (1019)
.|..++-.|--+.|.+.-.+.+.-..++...+....-. . ..+..++-...+-+-| .||..
T Consensus 198 ~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~ 277 (431)
T PF10443_consen 198 PLSKALPNRVFKTISLSDASPESAKQYVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEF 277 (431)
T ss_pred hHHHhCCCCceeEEeecCCCHHHHHHHHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHH
Confidence 36667766544778888888888888888887653100 0 1233334333332222 46666
Q ss_pred HHHHH-----HHHHHHHHHHHH----Hhc--CCCCCCCCccCCCHHHHHHHHHhh
Q 001735 942 LCIAA-----AYRPVQELLEEE----RKR--GKNDAAPVLRPLKLEDFIQSKAKV 985 (1019)
Q Consensus 942 L~~~A-----a~~Airr~l~~~----~~~--~~~~~~~~~~pLT~eDF~~Al~kv 985 (1019)
++++. ...|+.+++.+. .+. ..........+-+.+.+-.-++.+
T Consensus 278 lvrRiksGe~p~~Av~~iI~qsa~eI~k~fl~~~~~~~~~~~Wt~~QaW~LIk~L 332 (431)
T PF10443_consen 278 LVRRIKSGESPEEAVEEIISQSASEIRKMFLLDDSDDAKSLKWTREQAWYLIKLL 332 (431)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHh
Confidence 66542 234444443321 111 111222334677888887777776
No 473
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.50 E-value=1.1 Score=53.04 Aligned_cols=203 Identities=22% Similarity=0.258 Sum_probs=111.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc---------------hhhhh-----hHHHHHHHHHHH
Q 001735 763 RPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLT---------------SKWFG-----DAEKLTKALFSF 819 (1019)
Q Consensus 763 ~p~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~---------------s~~~G-----e~e~~I~~lF~~ 819 (1019)
.+|.-||+.|--|+|||+.+..+|..+ +..+.-+.+.... ..+++ .+....+.....
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ 177 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK 177 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence 567789999999999999999999987 5555555543220 01111 244566778888
Q ss_pred HHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCc--HHHHhhCCC-Ccc
Q 001735 820 ASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLD--DAVIRRLPR-RIY 896 (1019)
Q Consensus 820 Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~LD--~aLlrRFd~-~I~ 896 (1019)
|+.....+|+||=..++-- ...++.++...-+-+ ++...++|+=++.-.+..+ .++-.+.+. -+.
T Consensus 178 ak~~~~DvvIvDTAGRl~i----------de~Lm~El~~Ik~~~--~P~E~llVvDam~GQdA~~~A~aF~e~l~itGvI 245 (451)
T COG0541 178 AKEEGYDVVIVDTAGRLHI----------DEELMDELKEIKEVI--NPDETLLVVDAMIGQDAVNTAKAFNEALGITGVI 245 (451)
T ss_pred HHHcCCCEEEEeCCCcccc----------cHHHHHHHHHHHhhc--CCCeEEEEEecccchHHHHHHHHHhhhcCCceEE
Confidence 8888889999998877621 123333433322223 3445566665543322222 222222211 112
Q ss_pred cCCCCHHHHHHHH---HHHHh--------ccCC--CCccCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH-HHhcC
Q 001735 897 VDLPDAENRMKIL---RIFLA--------HESL--ESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEE-ERKRG 962 (1019)
Q Consensus 897 V~lPd~eeR~eIL---k~~L~--------~~~l--~~dvdl~~LA~~TeG~SgaDL~~L~~~Aa~~Airr~l~~-~~~~~ 962 (1019)
+...|-+.|---. +..+. .+.+ -+.++-+.+|.+.-| -+|+..|+..|...--.+-.++ ..+..
T Consensus 246 lTKlDGdaRGGaALS~~~~tg~PIkFiGtGEki~dLE~F~P~R~asRILG--MGDv~sLvEk~~~~~d~e~a~~~~~kl~ 323 (451)
T COG0541 246 LTKLDGDARGGAALSARAITGKPIKFIGTGEKIDDLEPFHPDRFASRILG--MGDVLSLIEKAEEVVDEEEAEKLAEKLK 323 (451)
T ss_pred EEcccCCCcchHHHhhHHHHCCCeEEEecCCCcccCCCcChHHHHHHhcC--cccHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 2333444442211 11111 1111 244667788888876 3699999988764322211111 00000
Q ss_pred CCCCCCCccCCCHHHHHHHHHhhC
Q 001735 963 KNDAAPVLRPLKLEDFIQSKAKVG 986 (1019)
Q Consensus 963 ~~~~~~~~~pLT~eDF~~Al~kv~ 986 (1019)
....|++||.+-+++++
T Consensus 324 -------~g~FtL~Df~~Ql~~m~ 340 (451)
T COG0541 324 -------KGKFTLEDFLEQLEQMK 340 (451)
T ss_pred -------hCCCCHHHHHHHHHHHH
Confidence 12489999988887765
No 474
>PRK06696 uridine kinase; Validated
Probab=95.50 E-value=0.028 Score=60.41 Aligned_cols=38 Identities=26% Similarity=0.287 Sum_probs=32.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc
Q 001735 765 CKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLT 802 (1019)
Q Consensus 765 ~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~ 802 (1019)
+.-|.|.|++|+|||+||+.|+..+ |.+++.+++.++.
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 4568899999999999999999998 6778877766654
No 475
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.44 E-value=0.051 Score=66.69 Aligned_cols=99 Identities=11% Similarity=0.228 Sum_probs=64.6
Q ss_pred cCCeEEEEcCchhhhhcccCCccHHHHHHHHHHHHhcCCCCEEEEecccCCCCCccccccccccccccccccCCCCchhh
Q 001735 484 TQPLIVYFPDSSLWLSRAVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPNFGRLAKLPLPLQR 563 (1019)
Q Consensus 484 ~~p~Iiff~eid~~~~~~~~~~~~~~~~s~~~~~l~~l~g~v~vI~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (1019)
.++-+|+||||+.+... . ..++.|+.+|..+.+. |+-|||+++..+. +
T Consensus 376 ~~~DLLlIDDIq~l~gk--e-~tqeeLF~l~N~l~e~--gk~IIITSd~~P~----e----------------------- 423 (617)
T PRK14086 376 REMDILLVDDIQFLEDK--E-STQEEFFHTFNTLHNA--NKQIVLSSDRPPK----Q----------------------- 423 (617)
T ss_pred hcCCEEEEehhccccCC--H-HHHHHHHHHHHHHHhc--CCCEEEecCCChH----h-----------------------
Confidence 46889999999987532 2 2456777777776543 4445554544333 0
Q ss_pred hhcccccCCCcchHHHHhcc--cceEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001735 564 LTEGLKATKRSDDNEIYNLF--TNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHK 623 (1019)
Q Consensus 564 LvIGmTNR~d~iDeaL~rrF--e~~~eI~LPdee~Rl~Il~Iht~k~~~~~~~~~~v~~l~~ 623 (1019)
...+++.|..|| ...++|..||.+.|..||+.+... +.....++-++.|+.
T Consensus 424 --------L~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~-r~l~l~~eVi~yLa~ 476 (617)
T PRK14086 424 --------LVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQ-EQLNAPPEVLEFIAS 476 (617)
T ss_pred --------hhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHh-cCCCCCHHHHHHHHH
Confidence 134678899888 566799999999999999987433 444444444444443
No 476
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.44 E-value=0.025 Score=64.56 Aligned_cols=71 Identities=25% Similarity=0.393 Sum_probs=46.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEe-ccccch---h---hhhhHHHHHHHHHHHHHhcCCeEEEecc
Q 001735 765 CKGILLFGPPGTGKTLLAKALATEA-----GANFISIT-GSTLTS---K---WFGDAEKLTKALFSFASKLAPVIIFVDE 832 (1019)
Q Consensus 765 ~~gVLL~GPpGTGKT~LArAIA~el-----g~~fi~Is-~seL~s---~---~~Ge~e~~I~~lF~~Ark~~PsIIfIDE 832 (1019)
..++++.|++|+|||+++++++.+. ...++.+. ..++.- . +....+.....++..+.+..|..|++.|
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGE 227 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGE 227 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 3679999999999999999999874 12233321 122210 0 0011122456777788889999999999
Q ss_pred chh
Q 001735 833 VDS 835 (1019)
Q Consensus 833 ID~ 835 (1019)
+-.
T Consensus 228 iR~ 230 (319)
T PRK13894 228 VRG 230 (319)
T ss_pred cCC
Confidence 953
No 477
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.44 E-value=0.11 Score=62.75 Aligned_cols=77 Identities=22% Similarity=0.247 Sum_probs=50.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccccchh--------------hh-----------------
Q 001735 762 LRPCKGILLFGPPGTGKTLLAKALATEA----GANFISITGSTLTSK--------------WF----------------- 806 (1019)
Q Consensus 762 ~~p~~gVLL~GPpGTGKT~LArAIA~el----g~~fi~Is~seL~s~--------------~~----------------- 806 (1019)
+.+...+||+|+||+|||+|+..++.+. |-++++++..+-... +.
T Consensus 28 ~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~g~l~~~~~~~~~~~~ 107 (509)
T PRK09302 28 LPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQKLIDEGKLFILDASPDPSEQ 107 (509)
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCeEEEEecCcccccc
Confidence 5566779999999999999999876542 556666655332110 00
Q ss_pred -----hhHHHHHHHHHHHHHhcCCeEEEeccchhhhh
Q 001735 807 -----GDAEKLTKALFSFASKLAPVIIFVDEVDSLLG 838 (1019)
Q Consensus 807 -----Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~ 838 (1019)
.+.+..+..+-..+....+.+|+||-+..+..
T Consensus 108 ~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~ 144 (509)
T PRK09302 108 EEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFS 144 (509)
T ss_pred cccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHh
Confidence 01123344455556677899999999988753
No 478
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.42 E-value=0.22 Score=51.47 Aligned_cols=22 Identities=41% Similarity=0.469 Sum_probs=19.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHh
Q 001735 768 ILLFGPPGTGKTLLAKALATEA 789 (1019)
Q Consensus 768 VLL~GPpGTGKT~LArAIA~el 789 (1019)
|.+|+++|.|||++|-++|-.+
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra 26 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRA 26 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7889999999999999998776
No 479
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.37 E-value=0.015 Score=59.10 Aligned_cols=27 Identities=44% Similarity=0.669 Sum_probs=21.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001735 768 ILLFGPPGTGKTLLAKALATEAGANFIS 795 (1019)
Q Consensus 768 VLL~GPpGTGKT~LArAIA~elg~~fi~ 795 (1019)
|.|+|+||||||+|+++++.. |.+++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~ 28 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVP 28 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE-
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEe
Confidence 789999999999999999999 888773
No 480
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.37 E-value=0.018 Score=65.12 Aligned_cols=73 Identities=26% Similarity=0.359 Sum_probs=47.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEe-ccccchh-------h-----hhhHHHHHHHHHHHHHhcCCeE
Q 001735 763 RPCKGILLFGPPGTGKTLLAKALATEAG--ANFISIT-GSTLTSK-------W-----FGDAEKLTKALFSFASKLAPVI 827 (1019)
Q Consensus 763 ~p~~gVLL~GPpGTGKT~LArAIA~elg--~~fi~Is-~seL~s~-------~-----~Ge~e~~I~~lF~~Ark~~PsI 827 (1019)
....+++|.||+|+|||+|+++++.... ..++.+. ..++.-. . .+...-....++..+.+..|.+
T Consensus 142 ~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~ 221 (308)
T TIGR02788 142 ASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDR 221 (308)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCe
Confidence 3446899999999999999999998763 2222221 1111100 0 0111233566777778889999
Q ss_pred EEeccchh
Q 001735 828 IFVDEVDS 835 (1019)
Q Consensus 828 IfIDEID~ 835 (1019)
|++||+-.
T Consensus 222 ii~gE~r~ 229 (308)
T TIGR02788 222 IILGELRG 229 (308)
T ss_pred EEEeccCC
Confidence 99999963
No 481
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.36 E-value=0.072 Score=58.93 Aligned_cols=114 Identities=19% Similarity=0.246 Sum_probs=64.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccccch---------hh------------------
Q 001735 762 LRPCKGILLFGPPGTGKTLLAKALATEA---------GANFISITGSTLTS---------KW------------------ 805 (1019)
Q Consensus 762 ~~p~~gVLL~GPpGTGKT~LArAIA~el---------g~~fi~Is~seL~s---------~~------------------ 805 (1019)
+.+..-.=|+||||+|||.|+-.+|-.. +..+++++...-+. .+
T Consensus 35 i~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~~ 114 (256)
T PF08423_consen 35 IPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRVFD 114 (256)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-SS
T ss_pred CCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeecCC
Confidence 3343445599999999999999888654 34578887644211 00
Q ss_pred hhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCC-chhHHHHHHHHHHHhhhccccccCCCcEEEEEec
Q 001735 806 FGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGA-FEHEATRRMRNEFMSAWDGLRSKESQKILILGAT 877 (1019)
Q Consensus 806 ~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~-~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTT 877 (1019)
..+....+..+-......+..+|+||-|-.++...... .+.......+..++..|..+... .++.||.|.
T Consensus 115 ~~~l~~~L~~l~~~l~~~~ikLIVIDSIaalfr~e~~~~~~~~~R~~~L~~~~~~L~~lA~~--~~iaVvvTN 185 (256)
T PF08423_consen 115 LEELLELLEQLPKLLSESKIKLIVIDSIAALFRSEFSGRGDLAERQRMLARLARILKRLARK--YNIAVVVTN 185 (256)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSSHHHHHHSGSTTTHHHHHHHHHHHHHHHHHHHHH--TT-EEEEEE
T ss_pred HHHHHHHHHHHHhhccccceEEEEecchHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHh--CCceEEeec
Confidence 01112222222222334467899999999987543211 11222345566666666666433 356666554
No 482
>PRK04182 cytidylate kinase; Provisional
Probab=95.36 E-value=0.015 Score=59.34 Aligned_cols=29 Identities=45% Similarity=0.718 Sum_probs=26.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001735 767 GILLFGPPGTGKTLLAKALATEAGANFIS 795 (1019)
Q Consensus 767 gVLL~GPpGTGKT~LArAIA~elg~~fi~ 795 (1019)
.|+|.|++|+|||++++++|..+|++++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 38899999999999999999999998875
No 483
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.36 E-value=0.061 Score=55.12 Aligned_cols=33 Identities=39% Similarity=0.509 Sum_probs=27.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 001735 768 ILLFGPPGTGKTLLAKALATEA---GANFISITGST 800 (1019)
Q Consensus 768 VLL~GPpGTGKT~LArAIA~el---g~~fi~Is~se 800 (1019)
+++.||||+|||+++..+|..+ |..+..+++..
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~ 38 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADT 38 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 7899999999999999998876 66677776653
No 484
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.35 E-value=0.066 Score=54.79 Aligned_cols=74 Identities=19% Similarity=0.166 Sum_probs=44.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEeccccch--------hhh-----hhHHHHHHHHHHHHHhcCCe
Q 001735 762 LRPCKGILLFGPPGTGKTLLAKALATEAGA--NFISITGSTLTS--------KWF-----GDAEKLTKALFSFASKLAPV 826 (1019)
Q Consensus 762 ~~p~~gVLL~GPpGTGKT~LArAIA~elg~--~fi~Is~seL~s--------~~~-----Ge~e~~I~~lF~~Ark~~Ps 826 (1019)
+.+...+.|.||.|+|||+|.+.|+..... --+.++...+.. ... =......+-.+..|--..|.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNAR 102 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCC
Confidence 345567999999999999999999876421 112222211110 000 01122334445556667899
Q ss_pred EEEeccchh
Q 001735 827 IIFVDEVDS 835 (1019)
Q Consensus 827 IIfIDEID~ 835 (1019)
||++||--.
T Consensus 103 illlDEP~~ 111 (163)
T cd03216 103 LLILDEPTA 111 (163)
T ss_pred EEEEECCCc
Confidence 999999754
No 485
>PF13245 AAA_19: Part of AAA domain
Probab=95.34 E-value=0.025 Score=51.14 Aligned_cols=23 Identities=48% Similarity=0.667 Sum_probs=16.8
Q ss_pred eEEEEcCCCChHH-HHHHHHHHHh
Q 001735 767 GILLFGPPGTGKT-LLAKALATEA 789 (1019)
Q Consensus 767 gVLL~GPpGTGKT-~LArAIA~el 789 (1019)
-++|.|||||||| ++++.++...
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 3667999999999 5555555554
No 486
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.32 E-value=0.084 Score=60.20 Aligned_cols=39 Identities=28% Similarity=0.333 Sum_probs=29.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh------C---CcEEEEeccc
Q 001735 762 LRPCKGILLFGPPGTGKTLLAKALATEA------G---ANFISITGST 800 (1019)
Q Consensus 762 ~~p~~gVLL~GPpGTGKT~LArAIA~el------g---~~fi~Is~se 800 (1019)
+.+..-+.|+||||+|||+|+..++... | ..+++++...
T Consensus 93 i~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~ 140 (316)
T TIGR02239 93 IETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEG 140 (316)
T ss_pred CCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCC
Confidence 5566778999999999999999887532 1 3567777655
No 487
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.32 E-value=0.015 Score=58.38 Aligned_cols=33 Identities=39% Similarity=0.602 Sum_probs=26.4
Q ss_pred EEcCCCChHHHHHHHHHHHhCCcEEEEeccccchh
Q 001735 770 LFGPPGTGKTLLAKALATEAGANFISITGSTLTSK 804 (1019)
Q Consensus 770 L~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s~ 804 (1019)
|.||||+|||++|+.||.++|+. .++..+++..
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~--~is~~~llr~ 33 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLV--HISVGDLLRE 33 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSE--EEEHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcc--eechHHHHHH
Confidence 68999999999999999999865 4555555443
No 488
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.30 E-value=0.018 Score=66.23 Aligned_cols=71 Identities=25% Similarity=0.387 Sum_probs=47.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEe-ccccchh--------h----hhhHHHHHHHHHHHHHhcCCeEE
Q 001735 764 PCKGILLFGPPGTGKTLLAKALATEAGA--NFISIT-GSTLTSK--------W----FGDAEKLTKALFSFASKLAPVII 828 (1019)
Q Consensus 764 p~~gVLL~GPpGTGKT~LArAIA~elg~--~fi~Is-~seL~s~--------~----~Ge~e~~I~~lF~~Ark~~PsII 828 (1019)
...++|+.||+|+|||+++++++..... .++.+. ..++.-. + .+........++..+.+..|..|
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~I 240 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRI 240 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCeE
Confidence 3467999999999999999999988732 333321 1111100 0 01112345567778888899999
Q ss_pred Eeccch
Q 001735 829 FVDEVD 834 (1019)
Q Consensus 829 fIDEID 834 (1019)
++.|+-
T Consensus 241 ivGEiR 246 (344)
T PRK13851 241 LLGEMR 246 (344)
T ss_pred EEEeeC
Confidence 999994
No 489
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=95.29 E-value=0.057 Score=63.24 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 001735 764 PCKGILLFGPPGTGKTLLAKALATEAG 790 (1019)
Q Consensus 764 p~~gVLL~GPpGTGKT~LArAIA~elg 790 (1019)
+...++|.||+|+|||+|++.|++...
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 345699999999999999999999863
No 490
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.28 E-value=0.016 Score=58.66 Aligned_cols=28 Identities=50% Similarity=0.770 Sum_probs=26.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001735 768 ILLFGPPGTGKTLLAKALATEAGANFIS 795 (1019)
Q Consensus 768 VLL~GPpGTGKT~LArAIA~elg~~fi~ 795 (1019)
|.|+|++|+|||++|+.+|..+|++++.
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~ 30 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLIS 30 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 7899999999999999999999998765
No 491
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.27 E-value=0.15 Score=61.58 Aligned_cols=77 Identities=23% Similarity=0.242 Sum_probs=51.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhh----------------------------hhHH
Q 001735 762 LRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWF----------------------------GDAE 810 (1019)
Q Consensus 762 ~~p~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~----------------------------Ge~e 810 (1019)
+.....++|+||||+|||+|+..++.+. |-++++++..+-..... ...+
T Consensus 270 ~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~ 349 (509)
T PRK09302 270 FFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGLE 349 (509)
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCHH
Confidence 4455679999999999999999988654 66777765533211000 0112
Q ss_pred HHHHHHHHHHHhcCCeEEEeccchhhhh
Q 001735 811 KLTKALFSFASKLAPVIIFVDEVDSLLG 838 (1019)
Q Consensus 811 ~~I~~lF~~Ark~~PsIIfIDEID~L~~ 838 (1019)
..+..+........+.+|+||-+..+..
T Consensus 350 ~~~~~i~~~i~~~~~~~vVIDslt~l~~ 377 (509)
T PRK09302 350 DHLIIIKREIEEFKPSRVAIDPLSALAR 377 (509)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 3344444455567889999999988854
No 492
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.26 E-value=0.091 Score=60.59 Aligned_cols=114 Identities=15% Similarity=0.158 Sum_probs=62.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccccch---------hh------------------
Q 001735 762 LRPCKGILLFGPPGTGKTLLAKALATEA---------GANFISITGSTLTS---------KW------------------ 805 (1019)
Q Consensus 762 ~~p~~gVLL~GPpGTGKT~LArAIA~el---------g~~fi~Is~seL~s---------~~------------------ 805 (1019)
+.+..-++|+|+||+|||.|+..+|... +..+++++...-+. .+
T Consensus 120 ~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~~~~~l~~i~~~~~~~ 199 (342)
T PLN03186 120 IETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVLENVAYARAYN 199 (342)
T ss_pred CcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCChhhhccceEEEecCC
Confidence 4556678899999999999999887432 13677777655110 00
Q ss_pred hhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCC-chhHHHHHHHHHHHhhhccccccCCCcEEEEEec
Q 001735 806 FGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGA-FEHEATRRMRNEFMSAWDGLRSKESQKILILGAT 877 (1019)
Q Consensus 806 ~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~-~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTT 877 (1019)
.......+..+........+.+|+||-|-.++...... .+.......+..++..|..+... .++.||.|.
T Consensus 200 ~e~~~~ll~~~~~~~~~~~~~LIVIDSI~alfr~~~~~~g~l~~r~~~L~~~l~~L~~lA~~--~~vaVviTN 270 (342)
T PLN03186 200 TDHQSELLLEAASMMAETRFALMIVDSATALYRTEFSGRGELSARQMHLGKFLRSLQRLADE--FGVAVVITN 270 (342)
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHH--cCCEEEEEc
Confidence 00011122222233345578999999999886432111 11111123355666655554322 345555553
No 493
>PTZ00035 Rad51 protein; Provisional
Probab=95.26 E-value=0.12 Score=59.36 Aligned_cols=39 Identities=26% Similarity=0.285 Sum_probs=29.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccc
Q 001735 762 LRPCKGILLFGPPGTGKTLLAKALATEA---------GANFISITGST 800 (1019)
Q Consensus 762 ~~p~~gVLL~GPpGTGKT~LArAIA~el---------g~~fi~Is~se 800 (1019)
+.+..-+.|+||||+|||.|+..++... +..+++++...
T Consensus 115 i~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~ 162 (337)
T PTZ00035 115 IETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEG 162 (337)
T ss_pred CCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccC
Confidence 5556678899999999999999887533 33566776544
No 494
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.26 E-value=0.026 Score=64.43 Aligned_cols=69 Identities=25% Similarity=0.325 Sum_probs=46.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEe-ccccchh------hhhhHHHHHHHHHHHHHhcCCeEEEeccc
Q 001735 766 KGILLFGPPGTGKTLLAKALATEA-----GANFISIT-GSTLTSK------WFGDAEKLTKALFSFASKLAPVIIFVDEV 833 (1019)
Q Consensus 766 ~gVLL~GPpGTGKT~LArAIA~el-----g~~fi~Is-~seL~s~------~~Ge~e~~I~~lF~~Ark~~PsIIfIDEI 833 (1019)
.++|+.|++|+|||+++++++... +..++.+. ..++.-. ......-....++..+.+..|..|++.|+
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGEi 224 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGEV 224 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEeec
Confidence 579999999999999999999876 22333332 2222110 00111223556777788899999999999
Q ss_pred h
Q 001735 834 D 834 (1019)
Q Consensus 834 D 834 (1019)
-
T Consensus 225 R 225 (323)
T PRK13833 225 R 225 (323)
T ss_pred C
Confidence 4
No 495
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.25 E-value=0.014 Score=61.28 Aligned_cols=22 Identities=41% Similarity=0.709 Sum_probs=17.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHh
Q 001735 768 ILLFGPPGTGKTLLAKALATEA 789 (1019)
Q Consensus 768 VLL~GPpGTGKT~LArAIA~el 789 (1019)
.++.||||||||+++.+++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 8999999999998777776655
No 496
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.24 E-value=0.15 Score=54.90 Aligned_cols=118 Identities=24% Similarity=0.348 Sum_probs=72.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc--------------------------------chhh-
Q 001735 762 LRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTL--------------------------------TSKW- 805 (1019)
Q Consensus 762 ~~p~~gVLL~GPpGTGKT~LArAIA~el---g~~fi~Is~seL--------------------------------~s~~- 805 (1019)
++-+.-+||.|+.|||||.|.+.++--+ |..+..++...- ...|
T Consensus 25 iP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~~~~ 104 (235)
T COG2874 25 IPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPVNWG 104 (235)
T ss_pred CccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEecccccccC
Confidence 4444558899999999999999997644 333333322100 0011
Q ss_pred hhhHHHHHHHHHHHHHhcCCeEEEeccchhhhhccCCCchhHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcH
Q 001735 806 FGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDD 885 (1019)
Q Consensus 806 ~Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~~~r~~~~~~e~~~ril~~LL~~Ldgl~~~~~~~VLVIaTTN~p~~LD~ 885 (1019)
.+.....+..+.+..+.+...||+||-+..++... ...-+.+|+..++.+... .++ |..|-.|..+++
T Consensus 105 ~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~--------~~~~vl~fm~~~r~l~d~--gKv--IilTvhp~~l~e 172 (235)
T COG2874 105 RRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD--------SEDAVLNFMTFLRKLSDL--GKV--IILTVHPSALDE 172 (235)
T ss_pred hHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc--------cHHHHHHHHHHHHHHHhC--CCE--EEEEeChhhcCH
Confidence 23345667777777777778999999998886442 122345666666666432 233 334556778888
Q ss_pred HHHhhC
Q 001735 886 AVIRRL 891 (1019)
Q Consensus 886 aLlrRF 891 (1019)
+++-|+
T Consensus 173 ~~~~ri 178 (235)
T COG2874 173 DVLTRI 178 (235)
T ss_pred HHHHHH
Confidence 777654
No 497
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=95.23 E-value=0.047 Score=57.86 Aligned_cols=51 Identities=18% Similarity=0.188 Sum_probs=35.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhhh---hHHHHHHHHHHH
Q 001735 767 GILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFG---DAEKLTKALFSF 819 (1019)
Q Consensus 767 gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s~~~G---e~e~~I~~lF~~ 819 (1019)
-|.|+|++|+|||++++.++..+|++++. +..+...... ..-..+...|..
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i~--~D~~~~~~~~~~~~~~~~l~~~fg~ 56 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPILD--ADIYAREALAPGSPILKAILQRYGN 56 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEee--CcHHHHHHHhcCchHHHHHHHHhCH
Confidence 48899999999999999999988988874 5444333222 123445555543
No 498
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=95.23 E-value=0.019 Score=61.71 Aligned_cols=37 Identities=46% Similarity=0.574 Sum_probs=28.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch
Q 001735 767 GILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS 803 (1019)
Q Consensus 767 gVLL~GPpGTGKT~LArAIA~elg~~fi~Is~seL~s 803 (1019)
-++|+||+|||||.+|-++|+..|.|++..+.-....
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~ 39 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYP 39 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-G
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceeccc
Confidence 3789999999999999999999999999998655443
No 499
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.22 E-value=0.086 Score=59.08 Aligned_cols=37 Identities=38% Similarity=0.421 Sum_probs=28.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----C-CcEEEEeccc
Q 001735 764 PCKGILLFGPPGTGKTLLAKALATEA----G-ANFISITGST 800 (1019)
Q Consensus 764 p~~gVLL~GPpGTGKT~LArAIA~el----g-~~fi~Is~se 800 (1019)
.+..++|.||+|+|||+++..+|..+ | ..+..+++..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 34678999999999999999998765 3 5666666554
No 500
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.22 E-value=0.16 Score=61.11 Aligned_cols=78 Identities=21% Similarity=0.198 Sum_probs=50.7
Q ss_pred CCCCCCCceEEEEcCCCChHHHHHHHHHHH----hCCcEEEEeccccchhh--------------h--------------
Q 001735 759 GNLLRPCKGILLFGPPGTGKTLLAKALATE----AGANFISITGSTLTSKW--------------F-------------- 806 (1019)
Q Consensus 759 ~gl~~p~~gVLL~GPpGTGKT~LArAIA~e----lg~~fi~Is~seL~s~~--------------~-------------- 806 (1019)
+| +.+...+||.||||||||+||..++.+ .|-+.++++..+-.... .
T Consensus 16 GG-lp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~g~l~~~~~~~~~ 94 (484)
T TIGR02655 16 GG-LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSFGWDLQKLVDEGKLFILDASPDP 94 (484)
T ss_pred CC-CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHcCCCHHHHhhcCceEEEecCchh
Confidence 44 566788999999999999999988543 25677666643211100 0
Q ss_pred --------hhHHHHHHHHHHHHHhcCCeEEEeccchhhh
Q 001735 807 --------GDAEKLTKALFSFASKLAPVIIFVDEVDSLL 837 (1019)
Q Consensus 807 --------Ge~e~~I~~lF~~Ark~~PsIIfIDEID~L~ 837 (1019)
-.....+..+........+..|+||-+..+.
T Consensus 95 ~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~ 133 (484)
T TIGR02655 95 EGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVF 133 (484)
T ss_pred ccccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhh
Confidence 0123344555556666778899999777764
Done!