Query 001735
Match_columns 1019
No_of_seqs 475 out of 3506
Neff 5.5
Searched_HMMs 29240
Date Tue Mar 26 16:37:06 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001735.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1032-1036//hhsearch_pdb/001735hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 1.0 1 1 648.0 13.4 547 176-1008 198-764 (806)
2 1ypw_A Transitional endoplasmi 1.0 1 1 447.2 3.7 547 176-1008 198-764 (806)
3 4b4t_J 26S protease regulatory 1.0 1 1 382.1 24.6 251 723-991 141-395 (405)
4 3cf2_A TER ATPase, transitiona 1.0 1 1 377.8 12.0 287 723-1013 197-487 (806)
5 4b4t_H 26S protease regulatory 1.0 1 1 374.9 24.8 261 724-1003 203-467 (467)
6 4b4t_M 26S protease regulatory 1.0 1 1 374.6 23.9 253 723-993 174-430 (434)
7 4b4t_I 26S protease regulatory 1.0 1 1 373.9 21.5 251 723-991 175-429 (437)
8 4b4t_L 26S protease subunit RP 1.0 1 1 370.9 22.1 250 724-991 175-428 (437)
9 4b4t_K 26S protease regulatory 1.0 1 1 360.0 25.7 250 723-990 165-420 (428)
10 1xwi_A SKD1 protein; VPS4B, AA 1.0 1 1 321.6 27.2 281 724-1010 6-322 (322)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=1.00 E-value=1 Score=648.04 Aligned_cols=547 Identities=25% Similarity=0.431 Sum_probs=445.8
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 64531026654430356988888643024576530000145578877214136897058899999999854099588742
Q 001735 176 KINISWDTFPYYINENTKSLLVECVGSHLKHKKFTATFGARLTSSSGRILLRSVPGTELYRERLIRALARELQVPLLVLD 255 (1019)
Q Consensus 176 ~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~~l~~~s~rILL~~~pgsE~Yqe~LakALA~~~~a~LL~lD 255 (1019)
--+|+|+++.++ +..|..|.+.+..+|++++++.+++ ....+.|||+|||| ....+||||+|++++++++.++
T Consensus 198 ~~~v~~~dIgGl--~~~~~~l~e~v~~pl~~p~~f~~~g---~~~p~GILL~GPPG--TGKT~LAraiA~elg~~~~~v~ 270 (806)
T 3cf2_A 198 LNEVGYDDIGGC--RKQLAQIKEMVELPLRHPALFKAIG---VKPPRGILLYGPPG--TGKTLIARAVANETGAFFFLIN 270 (806)
T ss_dssp SSSCCGGGCCSC--CTTHHHHHHHHHHHHHCCGGGTSCC---CCCCCEEEEECCTT--SCHHHHHHHHHTTTTCEEEEEE
T ss_pred CCCCCHHHHCCH--HHHHHHHHHHHHHHCCCHHHHHHCC---CCCCCEEEEECCCC--CCHHHHHHHHHHHHCCEEEEEE
T ss_conf 899990351499--9999999999998751989886358---99997589779899--9889999999997198399997
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 57789977888889765777456650000112335730000134544567999557788879999721177627888764
Q 001735 256 SSVLAPYDFADDSSDCESDNYEETSESEVEDENDASNEEEWTSSNEARTDGSDSEADMQATAEAALKKLVPFNLEELEKK 335 (1019)
Q Consensus 256 s~~l~~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~k~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 335 (1019)
.+.+.+
T Consensus 271 ~~~l~s-------------------------------------------------------------------------- 276 (806)
T 3cf2_A 271 GPEIMS-------------------------------------------------------------------------- 276 (806)
T ss_dssp HHHHHS--------------------------------------------------------------------------
T ss_pred HHHHHC--------------------------------------------------------------------------
T ss_conf 379543--------------------------------------------------------------------------
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 21656778644445568997311111237990898188742345551454101257999997422467879988766178
Q 001735 336 LSGELDSSSESSKSEAAEPSDTSKRLLKKGDRVKYIGPSVRVEADNRIILGKIMTSDGPKNAYTIIPDRALSSGQRGEVY 415 (1019)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdrvk~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~g~v~ 415 (1019)
+|+
T Consensus 277 ---------------------------------k~~-------------------------------------------- 279 (806)
T 3cf2_A 277 ---------------------------------KLA-------------------------------------------- 279 (806)
T ss_dssp ---------------------------------SCT--------------------------------------------
T ss_pred ---------------------------------CCC--------------------------------------------
T ss_conf ---------------------------------331--------------------------------------------
Q ss_pred EECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCH
Q ss_conf 45277112551355689998988875567899998322225654445664013556699999999730697599972812
Q 001735 416 EVNGDRAAVILDISADNKGEGEKDDKVAEQPARPPVYWIDVKHIEHDLDTQAEDCYIAMEALCEVLHSTQPLIVYFPDSS 495 (1019)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~e~~~~~~p~Iiff~did 495 (1019)
| .-.-.+..+|+.|+..+|+||||||+|
T Consensus 280 ---------------------g-------------------------------ese~~lr~lF~~A~~~~PsIIfIDEiD 307 (806)
T 3cf2_A 280 ---------------------G-------------------------------ESESNLRKAFEEAEKNAPAIIFIDELD 307 (806)
T ss_dssp ---------------------T-------------------------------HHHHHHHHHHHHHTTSCSEEEEEESGG
T ss_pred ---------------------H-------------------------------HHHHHHHHHHHHHHHCCCEEEEEEHHC
T ss_conf ---------------------6-------------------------------789999999999997299299985100
Q ss_pred HHHHC--CCCCCCHHHHHHHHHHHHHCCC--CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCC
Q ss_conf 34210--3677407899999999874579--9899991046788996322221133454443457987200110022358
Q 001735 496 LWLSR--AVPRCNRKEFVRKVEEMFDQLS--GPVVLICGQNKNETGPKEKEKFTMILPNFGRLAKLPLPLQRLTEGLKAT 571 (1019)
Q Consensus 496 ~~~~~--~~~~~~~~~~~s~~~~~l~~l~--g~v~vI~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~LvIGmTNR 571 (1019)
.++.. ....+...++++.|+++|+++. ++|+|| |+|||
T Consensus 308 al~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VI--------------------------------------aaTN~ 349 (806)
T 3cf2_A 308 AIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVM--------------------------------------AATNR 349 (806)
T ss_dssp GTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEE--------------------------------------EECSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEE--------------------------------------EECCC
T ss_conf 2334457788739999999999997466666987999--------------------------------------96698
Q ss_pred CCCCHHHHHH--CCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 9751399982--03516897699958799999999999755554323179999997630577432223454201334775
Q 001735 572 KRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLEDHELSCTDLLHVNTDGVILTKQR 649 (1019)
Q Consensus 572 ~d~iDeaL~r--rFe~~ieI~LPdeegRl~Il~Iht~~~~~~~~~~~~i~~l~~~l~t~~~~gaDL~~Lct~~~l~s~~~ 649 (1019)
+++||+||+| ||+++|+|++||.++|.+||++|+.++. ...+.++..++. .|.||+|+||..||.++++.+..+
T Consensus 350 ~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~--~~~dvdl~~lA~--~T~GfsgaDL~~Lv~eA~~~A~~r 425 (806)
T 3cf2_A 350 PNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK--LADDVDLEQVAN--ETHGHVGADLAALCSEAALQAIRK 425 (806)
T ss_dssp TTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSE--ECTTCCHHHHHH--HCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCC--CCCCCCHHHHHH--HCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 0326988857863616886689798999999999856899--886438999997--568998999999999999999984
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 55678660011122477887469711346888999999840110005787411124434566321002646899988654
Q 001735 650 AEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQETASRKPTQNLKNLAKDEYESNFVSAVVPPGEIGVRF 729 (1019)
Q Consensus 650 ~e~~V~~A~s~~l~~~~~~~v~~~ki~V~~~df~~Al~~l~p~~~~~~~~~~~l~~~~~~e~e~~~l~~ii~~~e~~vtf 729 (1019)
....+..... .........+.|+++||+.|+.+++|+..+. +....+.++|
T Consensus 426 ~~~~i~~~~~------~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~-----------------------~~~~~p~v~w 476 (806)
T 3cf2_A 426 KMDLIDLEDE------TIDAEVMNSLAVTMDDFRWALSQSNPSALRE-----------------------TVVEVPQVTW 476 (806)
T ss_dssp HHHHGGGTCC------CCSHHHHHHCEECTTHHHHHHSSSSCCCCCC-----------------------CCCBCCCCCS
T ss_pred CCCCCCCCCC------CCCHHHHCCCEEEHHHHHHHHHHCCCCCCCC-----------------------CCCCCCCCCH
T ss_conf 1451200013------3204552255651999999997287831123-----------------------4445788788
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHH
Q ss_conf 44568299999999998731378011103998889934999937998599999999999299299995664211222118
Q 001735 730 DDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDA 809 (1019)
Q Consensus 730 ddIgGle~vk~~L~e~V~~pl~~pelf~k~gl~~p~kgILL~GPpGTGKT~LAkAIA~elg~pfi~Is~seL~s~~~ge~ 809 (1019)
++++|++++++.|++.+.+|+.+|+.|.+.+ ..+++++|||||||||||++|+++|++++.+|+.+++++++++|.|++
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g-~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGes 555 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFG-MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGES 555 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC-CCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSC
T ss_pred HHHCCHHHHHHHHHHHHHHHHHCHHHHHHCC-CCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEECCCHHHCCCCCHH
T ss_conf 8817889999999999975666899997148-888860798668778963999999998389668742411210334368
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCCC--CHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCHHH
Q ss_conf 9999999999872099499864302442015998--50588999999887641166656788579998149999984899
Q 001735 810 EKLTKALFSFASKLAPVIIFVDEVDSLLGARGGA--FEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAV 887 (1019)
Q Consensus 810 e~~I~~iF~~A~k~~PSIIfIDEID~L~~~r~~~--~~~e~~~ril~eLL~~Ldgl~~~~~~~VlIIaTTN~p~~LD~aL 887 (1019)
++.++.+|..|++.+||||||||||+|++.|+.. ..+...++++++||++||++.. ..+|+||||||+|+.||+++
T Consensus 556 e~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~--~~~V~vi~aTN~p~~lD~Al 633 (806)
T 3cf2_A 556 EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST--KKNVFIIGATNRPDIIDPAI 633 (806)
T ss_dssp HHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCS--SSSEEEECC-CCSSSSCHHH
T ss_pred HHHHHHHHHHHHHCCCCEEECHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCC--CCCEEEEEECCCCHHCCHHH
T ss_conf 9999999999997299635204256776315888889866999999999999748787--79989999379804389847
Q ss_pred HH--HCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC---
Q ss_conf 70--0787743589999999999999971157788657889999803998999999999999999999999997307---
Q 001735 888 IR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKRG--- 962 (1019)
Q Consensus 888 lr--RFd~~I~V~lPd~eeR~eILk~ll~~~~l~~dvdl~~LA~~TeG~SgaDL~~Lv~~Aa~~Aire~l~~~~~~~--- 962 (1019)
+| ||++.|+|++|+.++|.+||+.++++..+..++++..||..|+||||+||.++|.+|++.|+++.++......
T Consensus 634 lRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~ 713 (806)
T 3cf2_A 634 LRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERER 713 (806)
T ss_dssp HSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHHHHC---------
T ss_pred CCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 17785507999799699999999999856799987789999997689999999999999999999999998564443330
Q ss_pred -------CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHCHHHHHHHHHHHCC
Q ss_conf -------8899987668889999999975299920102408999999997389
Q 001735 963 -------KNDAAPVLRPLKLEDFIQSKAKVGPSVAYDAASMNELRKWNEQYGE 1008 (1019)
Q Consensus 963 -------~~~~~~~~r~It~eDF~~Al~kv~Ps~s~~~~~m~~lvkW~diyG~ 1008 (1019)
........++|+++||..|+.+++||++.+. +..+.+|...++.
T Consensus 714 ~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pSvs~~~--l~~y~~~~~~f~~ 764 (806)
T 3cf2_A 714 QTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDND--IRKYEMFAQTLQQ 764 (806)
T ss_dssp --------------CCC----CCTTTC-----------------CCCC-----
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHHHC
T ss_conf 15741001233456686479999999986799999999--9999999999725
No 2
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=1.00 E-value=1 Score=447.23 Aligned_cols=547 Identities=26% Similarity=0.433 Sum_probs=416.9
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 64531026654430356988888643024576530000145578877214136897058899999999854099588742
Q 001735 176 KINISWDTFPYYINENTKSLLVECVGSHLKHKKFTATFGARLTSSSGRILLRSVPGTELYRERLIRALARELQVPLLVLD 255 (1019)
Q Consensus 176 ~~~vsf~~fpyylse~tk~~L~~~~~~hL~~~~~~~~~~~~l~~~s~rILL~~~pgsE~Yqe~LakALA~~~~a~LL~lD 255 (1019)
.-.++|+++.++ +..+..|.+....++++++++..++ ......|||.|||| ....+||||||+..+.+++.++
T Consensus 198 ~~~v~~~di~G~--~~~~~~l~e~i~~~l~~~~~~~~l~---i~~~~~vLL~Gp~G--tGKTtLarala~~l~~~~i~v~ 270 (806)
T 1ypw_A 198 LNEVGYDDVGGC--RKQLAQIKEMVELPLRHPALFKAIG---VKPPRGILLYGPPG--TGKTLIARAVANETGAFFFLIN 270 (806)
T ss_dssp SSSCCGGGCCSC--SGGGGHHHHHHHHHHHCGGGGTSSC---CCCCCEEEECSCTT--SSHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCCHHHHCCH--HHHHHHHHHHHHHHHHCHHHHHHCC---CCCCCEEEEECCCC--CCHHHHHHHHHHHCCCCEEEEE
T ss_conf 578998882880--9999999999998742989998638---89997389989399--9879999999997199689997
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 57789977888889765777456650000112335730000134544567999557788879999721177627888764
Q 001735 256 SSVLAPYDFADDSSDCESDNYEETSESEVEDENDASNEEEWTSSNEARTDGSDSEADMQATAEAALKKLVPFNLEELEKK 335 (1019)
Q Consensus 256 s~~l~~~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~k~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 335 (1019)
...+.+. + .
T Consensus 271 ~~~l~~~--------~------------------------------------------------------~--------- 279 (806)
T 1ypw_A 271 GPEIMSK--------L------------------------------------------------------A--------- 279 (806)
T ss_dssp HHHHSSS--------S------------------------------------------------------T---------
T ss_pred CHHHHHH--------H------------------------------------------------------H---------
T ss_conf 5576544--------1------------------------------------------------------0---------
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 21656778644445568997311111237990898188742345551454101257999997422467879988766178
Q 001735 336 LSGELDSSSESSKSEAAEPSDTSKRLLKKGDRVKYIGPSVRVEADNRIILGKIMTSDGPKNAYTIIPDRALSSGQRGEVY 415 (1019)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdrvk~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~g~~g~v~ 415 (1019)
T Consensus 280 -------------------------------------------------------------------------------- 279 (806)
T 1ypw_A 280 -------------------------------------------------------------------------------- 279 (806)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred EECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCH
Q ss_conf 45277112551355689998988875567899998322225654445664013556699999999730697599972812
Q 001735 416 EVNGDRAAVILDISADNKGEGEKDDKVAEQPARPPVYWIDVKHIEHDLDTQAEDCYIAMEALCEVLHSTQPLIVYFPDSS 495 (1019)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~e~~~~~~p~Iiff~did 495 (1019)
| ...-.+..+|+.+....|.|+|+||++
T Consensus 280 ---------------------g-------------------------------~~~~~l~~vf~~a~~~~p~il~iDEid 307 (806)
T 1ypw_A 280 ---------------------G-------------------------------ESESNLRKAFEEAEKNAPAIIFIDELD 307 (806)
T ss_dssp ---------------------T-------------------------------HHHHHHHHHHHHHHHHCSEEEEEESGG
T ss_pred ---------------------H-------------------------------HHHHHHHHHHHHHHHCCCCEEEECCHH
T ss_conf ---------------------1-------------------------------589999999999986499579830077
Q ss_pred HHHHC--CCCCCCHHHHHHHHHHHHHCCCC--CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCC
Q ss_conf 34210--36774078999999998745799--899991046788996322221133454443457987200110022358
Q 001735 496 LWLSR--AVPRCNRKEFVRKVEEMFDQLSG--PVVLICGQNKNETGPKEKEKFTMILPNFGRLAKLPLPLQRLTEGLKAT 571 (1019)
Q Consensus 496 ~~~~~--~~~~~~~~~~~s~~~~~l~~l~g--~v~vI~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~LvIGmTNR 571 (1019)
.++.. ..+.....++.+.+..+|+++.. .+++| ++||+
T Consensus 308 ~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI--------------------------------------~atn~ 349 (806)
T 1ypw_A 308 AIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVM--------------------------------------AATNR 349 (806)
T ss_dssp GTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEE--------------------------------------EECSC
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEE--------------------------------------CCCCC
T ss_conf 7511146663168899999999986541146617876--------------------------------------02398
Q ss_pred CCCCHHHHHH--CCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 9751399982--03516897699958799999999999755554323179999997630577432223454201334775
Q 001735 572 KRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLEDHELSCTDLLHVNTDGVILTKQR 649 (1019)
Q Consensus 572 ~d~iDeaL~r--rFe~~ieI~LPdeegRl~Il~Iht~~~~~~~~~~~~i~~l~~~l~t~~~~gaDL~~Lct~~~l~s~~~ 649 (1019)
++.+|+++++ ||+++++|++|+.+.|++||..++.+.. ...+.++..++. .+.+|.++|+..+|.++......+
T Consensus 350 ~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~--l~~~~~l~~la~--~t~g~~g~dl~~l~~ea~~~a~r~ 425 (806)
T 1ypw_A 350 PNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK--LADDVDLEQVAN--ETHGHVGADLAALCSEAALQAIRK 425 (806)
T ss_dssp TTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSC--CCTTCCTHHHHH--SCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC--CCCCCHHHHHHH--HHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 1004999864655444355699999999999999873387--762200677777--614753689999999999998764
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 55678660011122477887469711346888999999840110005787411124434566321002646899988654
Q 001735 650 AEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQETASRKPTQNLKNLAKDEYESNFVSAVVPPGEIGVRF 729 (1019)
Q Consensus 650 ~e~~V~~A~s~~l~~~~~~~v~~~ki~V~~~df~~Al~~l~p~~~~~~~~~~~l~~~~~~e~e~~~l~~ii~~~e~~vtf 729 (1019)
....+..... .. .......+.++..+|..++....|+.. ...++ ..+.++|
T Consensus 426 ~~~~i~~~~~-----~~-~~~~~~~~~v~~~d~~~al~~~~~s~~---------------------~~~~~--~~~~v~~ 476 (806)
T 1ypw_A 426 KMDLIDLEDE-----TI-DAEVMNSLAVTMDDFRWALSQSNPSAL---------------------RETVV--EVPQVTW 476 (806)
T ss_dssp TTTTTSCHHH-----HC-CHHHHTTCCCCTTHHHHHHHHSCCCCC---------------------CCCCC--CCCCCSS
T ss_pred HCCCCCHHHH-----CC-CHHHHHHHHHHHHHHHCCCCCCCCHHH---------------------HHHCC--CCCCCCC
T ss_conf 2010115542-----01-012444555556653111123571444---------------------20002--5754211
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHH
Q ss_conf 44568299999999998731378011103998889934999937998599999999999299299995664211222118
Q 001735 730 DDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDA 809 (1019)
Q Consensus 730 ddIgGle~vk~~L~e~V~~pl~~pelf~k~gl~~p~kgILL~GPpGTGKT~LAkAIA~elg~pfi~Is~seL~s~~~ge~ 809 (1019)
++++|++++++.+.+++.+++.+++.|...+ ..++.++||+||||||||++|+++|++++.+|+.++++++.+.|.++.
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~-~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~ 555 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFG-MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGES 555 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCC-CCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTS
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCHHHHHHCC-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECHHHHHHHCCCC
T ss_conf 1124430222218999975553639897548-887753689779998789999999998489879986167655305754
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCCCC--HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCHHH
Q ss_conf 99999999998720994998643024420159985--0588999999887641166656788579998149999984899
Q 001735 810 EKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAF--EHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAV 887 (1019)
Q Consensus 810 e~~I~~iF~~A~k~~PSIIfIDEID~L~~~r~~~~--~~e~~~ril~eLL~~Ldgl~~~~~~~VlIIaTTN~p~~LD~aL 887 (1019)
+..++.+|..++...|+||||||||.+...+.... ......+++++|+..|+++.. ..+++||+|||+++.+|+++
T Consensus 556 ~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~--~~~v~vI~tTN~~~~ld~al 633 (806)
T 1ypw_A 556 EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST--KKNVFIIGATNRPDIIDPAI 633 (806)
T ss_dssp SHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC--------CCBCCCCCBSCGGGSCTT
T ss_pred HHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCC--CCCEEEEEECCCCCCCCHHH
T ss_conf 7889999999870698599998744542112687777641689999999998754566--68769998438712279878
Q ss_pred HH--HCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC---
Q ss_conf 70--0787743589999999999999971157788657889999803998999999999999999999999997307---
Q 001735 888 IR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKRG--- 962 (1019)
Q Consensus 888 lr--RFd~~I~V~lPd~eeR~eILk~ll~~~~l~~dvdl~~LA~~TeG~SgaDL~~Lv~~Aa~~Aire~l~~~~~~~--- 962 (1019)
+| ||+..+++++|+.++|..||+.+++...+..++++..++..+.||+++||.++|..|+..|+++.++......
T Consensus 634 lrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~~~~~~~~~~~~ 713 (806)
T 1ypw_A 634 LRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERER 713 (806)
T ss_dssp SSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC-----------
T ss_pred HCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 37655673055599799999999999864599975227999997350059999999999999999999999877665430
Q ss_pred -------CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHCHHHHHHHHHHHCC
Q ss_conf -------8899987668889999999975299920102408999999997389
Q 001735 963 -------KNDAAPVLRPLKLEDFIQSKAKVGPSVAYDAASMNELRKWNEQYGE 1008 (1019)
Q Consensus 963 -------~~~~~~~~r~It~eDF~~Al~kv~Ps~s~~~~~m~~lvkW~diyG~ 1008 (1019)
.........+|+++||..|+..++|+++.+ .+..+.+|...+..
T Consensus 714 ~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~svs~~--~~~~ye~~~~~~~~ 764 (806)
T 1ypw_A 714 QTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDN--DIRKYEMFAQTLQQ 764 (806)
T ss_dssp -------------CCTTTTTTSSCCCCCC------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHHHH
T ss_conf 1464312334346667607999999998678999999--99999999999976
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=382.08 Aligned_cols=251 Identities=34% Similarity=0.556 Sum_probs=231.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 99886544456829999999999873137801110399888993499993799859999999999929929999566421
Q 001735 723 GEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT 802 (1019)
Q Consensus 723 ~e~~vtfddIgGle~vk~~L~e~V~~pl~~pelf~k~gl~~p~kgILL~GPpGTGKT~LAkAIA~elg~pfi~Is~seL~ 802 (1019)
..|+++|+||+|+++++++|++.|.+|+.+|++|.+.+ ..|++|+|||||||||||++|+|+|++++.+|+.++++++.
T Consensus 141 ~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~g-i~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 219 (405)
T 4b4t_J 141 KVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLG-IAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELV 219 (405)
T ss_dssp CSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHT-CCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGS
T ss_pred CCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCC-CCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEHHHHH
T ss_conf 79999888828889999999999999874999998679-99888258858999987899999998518885288868951
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCCCC--HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCC
Q ss_conf 122211899999999998720994998643024420159985--058899999988764116665678857999814999
Q 001735 803 SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAF--EHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP 880 (1019)
Q Consensus 803 s~~~ge~e~~I~~iF~~A~k~~PSIIfIDEID~L~~~r~~~~--~~e~~~ril~eLL~~Ldgl~~~~~~~VlIIaTTN~p 880 (1019)
++|.|++++.++.+|..|+..+||||||||||++++.|.... ......+++++||..||++.. ..+|+||+|||+|
T Consensus 220 sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~--~~~V~vIaATNrp 297 (405)
T 4b4t_J 220 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET--SKNIKIIMATNRL 297 (405)
T ss_dssp CSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC--CCCEEEEEEESCS
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC--CCCEEEEECCCCH
T ss_conf 13354689999999999987099467653341111577888999768999999999996043388--8875788126981
Q ss_pred CCCCHHHHH--HCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 998489970--078774358999999999999997115778865788999980399899999999999999999999999
Q 001735 881 FDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEE 958 (1019)
Q Consensus 881 ~~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~ll~~~~l~~dvdl~~LA~~TeG~SgaDL~~Lv~~Aa~~Aire~l~~~ 958 (1019)
+.||++++| ||++.|+|++|+.++|.+||+.++++..+..++++..||..|+||||+||.++|.+|++.|+++.
T Consensus 298 d~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~---- 373 (405)
T 4b4t_J 298 DILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRER---- 373 (405)
T ss_dssp SSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTT----
T ss_pred HHCCHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC----
T ss_conf 4489967287767669976996999999999998559999965799999987799999999999999999999869----
Q ss_pred HHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 730788999876688899999999752999201
Q 001735 959 RKRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAY 991 (1019)
Q Consensus 959 ~~~~~~~~~~~~r~It~eDF~~Al~kv~Ps~s~ 991 (1019)
...|+++||..|+.++.+....
T Consensus 374 -----------~~~vt~~Df~~Al~~v~~~~~~ 395 (405)
T 4b4t_J 374 -----------RIHVTQEDFELAVGKVMNKNQE 395 (405)
T ss_dssp -----------CSBCCHHHHHHHHHHHHHHHTC
T ss_pred -----------CCCCCHHHHHHHHHHHHCCCCC
T ss_conf -----------9875999999999998572655
No 4
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=1.00 E-value=1 Score=377.77 Aligned_cols=287 Identities=33% Similarity=0.558 Sum_probs=255.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 99886544456829999999999873137801110399888993499993799859999999999929929999566421
Q 001735 723 GEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT 802 (1019)
Q Consensus 723 ~e~~vtfddIgGle~vk~~L~e~V~~pl~~pelf~k~gl~~p~kgILL~GPpGTGKT~LAkAIA~elg~pfi~Is~seL~ 802 (1019)
..+.++|+||+|+++++++|++.+.+|+.+|++|.+.+ ..|++|||||||||||||++|+++|++++.+|+.++++++.
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g-~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~ 275 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIG-VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 275 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCC-CCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHH
T ss_pred CCCCCCHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHCC-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEEEEHHHHH
T ss_conf 58999903514999999999999998751989886358-99997589779899988999999999719839999737954
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCC
Q ss_conf 12221189999999999872099499864302442015998505889999998876411666567885799981499999
Q 001735 803 SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFD 882 (1019)
Q Consensus 803 s~~~ge~e~~I~~iF~~A~k~~PSIIfIDEID~L~~~r~~~~~~e~~~ril~eLL~~Ldgl~~~~~~~VlIIaTTN~p~~ 882 (1019)
++|.|+.++.++.+|..|++++||||||||||.+++.+... ..+..++++++|+..|+++.. ..+|+||++||+++.
T Consensus 276 sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~-~~~~~~riv~~LL~~mdg~~~--~~~V~VIaaTN~~d~ 352 (806)
T 3cf2_A 276 SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGLKQ--RAHVIVMAATNRPNS 352 (806)
T ss_dssp SSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTC-CCTTHHHHHHHHHTHHHHCCG--GGCEEEEEECSSTTT
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEEHHCCCCCCCCCC-CCHHHHHHHHHHHHHHHCCCC--CCCEEEEEECCCHHH
T ss_conf 33316789999999999997299299985100233445778-873999999999999746666--698799996698032
Q ss_pred CCHHHHH--HCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8489970--07877435899999999999999711577886578899998039989999999999999999999999973
Q 001735 883 LDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERK 960 (1019)
Q Consensus 883 LD~aLlr--RFd~~I~V~lPd~eeR~eILk~ll~~~~l~~dvdl~~LA~~TeG~SgaDL~~Lv~~Aa~~Aire~l~~~~~ 960 (1019)
||++++| ||++.|++++|+.++|.+||+.++++.....++++..+|..|+||+|+||.++|.+|++.|+++.......
T Consensus 353 LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~ 432 (806)
T 3cf2_A 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 432 (806)
T ss_dssp SCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred CCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 69888578636168866897989999999998568998864389999975689989999999999999999841451200
Q ss_pred CCCCCCC--CCCCCCCHHHHHHHHHHHCCCCCCCHHCHHHHHHHHHHHCCCCCCC
Q ss_conf 0788999--8766888999999997529992010240899999999738998655
Q 001735 961 RGKNDAA--PVLRPLKLEDFIQSKAKVGPSVAYDAASMNELRKWNEQYGEGGSRR 1013 (1019)
Q Consensus 961 ~~~~~~~--~~~r~It~eDF~~Al~kv~Ps~s~~~~~m~~lvkW~diyG~~g~rk 1013 (1019)
....... .....|+++||..|+..+.|+...+.....+.+.|+|++|+..+|+
T Consensus 433 ~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~ 487 (806)
T 3cf2_A 433 EDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKR 487 (806)
T ss_dssp TCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHH
T ss_pred CCCCCCHHHHCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCHHHHHH
T ss_conf 0133204552255651999999997287831123444578878888178899999
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=374.89 Aligned_cols=261 Identities=33% Similarity=0.556 Sum_probs=235.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCH
Q ss_conf 98865444568299999999998731378011103998889934999937998599999999999299299995664211
Q 001735 724 EIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS 803 (1019)
Q Consensus 724 e~~vtfddIgGle~vk~~L~e~V~~pl~~pelf~k~gl~~p~kgILL~GPpGTGKT~LAkAIA~elg~pfi~Is~seL~s 803 (1019)
.|+++|+||+|++++++.|++.|.+|+.+|+.|.+.+ ..|++|||||||||||||++|+|+|++++.+|+.++++++.+
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G-i~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~s 281 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG-IDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ 281 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT-CCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCC
T ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHCC-CCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHC
T ss_conf 9999878854599999999999998842999998779-999981476489998099999999844689869988699502
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCCCC--HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCC
Q ss_conf 22211899999999998720994998643024420159985--0588999999887641166656788579998149999
Q 001735 804 KWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAF--EHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPF 881 (1019)
Q Consensus 804 ~~~ge~e~~I~~iF~~A~k~~PSIIfIDEID~L~~~r~~~~--~~e~~~ril~eLL~~Ldgl~~~~~~~VlIIaTTN~p~ 881 (1019)
+|.|++++.++.+|..|+..+||||||||+|.++..|.... ......++++++|..|++... ..+|+||+|||+|+
T Consensus 282 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~--~~~ViVIaATNrpd 359 (467)
T 4b4t_H 282 KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP--RGNIKVMFATNRPN 359 (467)
T ss_dssp CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC--TTTEEEEEECSCTT
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC--CCCEEEEECCCCCC
T ss_conf 6677899999999999876178467522321101355676778627899999999998655578--88379882878931
Q ss_pred CCCHHHHH--HCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98489970--0787743589999999999999971157788657889999803998999999999999999999999997
Q 001735 882 DLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEER 959 (1019)
Q Consensus 882 ~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~ll~~~~l~~dvdl~~LA~~TeG~SgaDL~~Lv~~Aa~~Aire~l~~~~ 959 (1019)
.||++++| ||++.|+|++|+.++|.+||+.+++...+..++++..||..|+||+|+||.++|.+|++.|+++.
T Consensus 360 ~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~----- 434 (467)
T 4b4t_H 360 TLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR----- 434 (467)
T ss_dssp SBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHT-----
T ss_pred CCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC-----
T ss_conf 179546366655079983896999999999998548999877799999977799999999999999999999838-----
Q ss_pred HCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHCHHHHHHHH
Q ss_conf 30788999876688899999999752999201024089999999
Q 001735 960 KRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAYDAASMNELRKWN 1003 (1019)
Q Consensus 960 ~~~~~~~~~~~r~It~eDF~~Al~kv~Ps~s~~~~~m~~lvkW~ 1003 (1019)
...|+++||..|++++.+....- .....+.+||
T Consensus 435 ----------~~~it~~Df~~Al~kV~~g~~k~-s~~~~y~~~n 467 (467)
T 4b4t_H 435 ----------RKVATEKDFLKAVDKVISGYKKF-SSTSRYMQYN 467 (467)
T ss_dssp ----------CSSBCHHHHHHHHHHHHHHHCC------------
T ss_pred ----------CCCCCHHHHHHHHHHHHCCCCCC-HHHHHHHHHC
T ss_conf ----------87669999999999996474561-2578998619
No 6
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=374.60 Aligned_cols=253 Identities=32% Similarity=0.561 Sum_probs=233.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 99886544456829999999999873137801110399888993499993799859999999999929929999566421
Q 001735 723 GEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT 802 (1019)
Q Consensus 723 ~e~~vtfddIgGle~vk~~L~e~V~~pl~~pelf~k~gl~~p~kgILL~GPpGTGKT~LAkAIA~elg~pfi~Is~seL~ 802 (1019)
..|.++|+||+|++++++.|++.|.+|+.+|+.|.+.+ ..|++|||||||||||||++|+|+|++++.+|+.++++++.
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g-~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMG-IRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHC-CCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCCHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHCC-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHH
T ss_conf 89799867609579999999999999974999998679-99887268779499988999999999959988998644643
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCCCCH--HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCC
Q ss_conf 1222118999999999987209949986430244201599850--58899999988764116665678857999814999
Q 001735 803 SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFE--HEATRRMRNEFMSAWDGLRSKESQKILILGATNRP 880 (1019)
Q Consensus 803 s~~~ge~e~~I~~iF~~A~k~~PSIIfIDEID~L~~~r~~~~~--~e~~~ril~eLL~~Ldgl~~~~~~~VlIIaTTN~p 880 (1019)
++|.|++++.++.+|..|+..+||||||||+|.+++.|..... .....+++++||..++++.. ..+|+||||||+|
T Consensus 253 ~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~--~~~ViVIaaTNrp 330 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSS--DDRVKVLAATNRV 330 (434)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCS--SCSSEEEEECSSC
T ss_pred HCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCC--CCCEEEEEECCCC
T ss_conf 13456389999999999986199089603325665225778888746999999999997136688--8998999948992
Q ss_pred CCCCHHHHH--HCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 998489970--078774358999999999999997115778865788999980399899999999999999999999999
Q 001735 881 FDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEE 958 (1019)
Q Consensus 881 ~~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~ll~~~~l~~dvdl~~LA~~TeG~SgaDL~~Lv~~Aa~~Aire~l~~~ 958 (1019)
+.||++++| ||++.|+|++|+.++|.+||+.++++..+..++++..||..|+||||+||.++|.+|++.|+++.
T Consensus 331 ~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~---- 406 (434)
T 4b4t_M 331 DVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNG---- 406 (434)
T ss_dssp CCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHT----
T ss_pred HHCCHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC----
T ss_conf 2339967157740389980895999999999998568999876799999986899899999999999999999869----
Q ss_pred HHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCH
Q ss_conf 73078899987668889999999975299920102
Q 001735 959 RKRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAYDA 993 (1019)
Q Consensus 959 ~~~~~~~~~~~~r~It~eDF~~Al~kv~Ps~s~~~ 993 (1019)
...|+++||..|+.++.|+.+...
T Consensus 407 -----------~~~i~~~Df~~Al~~v~~~~~~~i 430 (434)
T 4b4t_M 407 -----------QSSVKHEDFVEGISEVQARKSKSV 430 (434)
T ss_dssp -----------CSSBCHHHHHHHHHSCSSSCCCCC
T ss_pred -----------CCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf -----------987699999999999737777573
No 7
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=373.93 Aligned_cols=251 Identities=33% Similarity=0.565 Sum_probs=230.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 99886544456829999999999873137801110399888993499993799859999999999929929999566421
Q 001735 723 GEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT 802 (1019)
Q Consensus 723 ~e~~vtfddIgGle~vk~~L~e~V~~pl~~pelf~k~gl~~p~kgILL~GPpGTGKT~LAkAIA~elg~pfi~Is~seL~ 802 (1019)
..|.++|+||+|+++++++|++.|.+|+.+|++|.+.+ ..|++|||||||||||||++|+|+|++++.+|+.++++++.
T Consensus 175 ~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~G-i~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~ 253 (437)
T 4b4t_I 175 KSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMG-IKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELI 253 (437)
T ss_dssp SSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHT-CCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGC
T ss_pred CCCCCCCEECCCHHHHHHHHHHHHHHHHHCHHHHHHCC-CCCCCCCCEECCCCCHHHHHHHHHHHHHCCCEEEEEHHHHH
T ss_conf 68998600557699999999999999876999998679-99777884488999639999999999859987998879953
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCCCC--HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCC
Q ss_conf 122211899999999998720994998643024420159985--058899999988764116665678857999814999
Q 001735 803 SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAF--EHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP 880 (1019)
Q Consensus 803 s~~~ge~e~~I~~iF~~A~k~~PSIIfIDEID~L~~~r~~~~--~~e~~~ril~eLL~~Ldgl~~~~~~~VlIIaTTN~p 880 (1019)
++|.|++++.++.+|..|+..+||||||||||++++.|.... ......+++++||..+|+... ..+|+||+|||+|
T Consensus 254 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~--~~~ViVIaATNrp 331 (437)
T 4b4t_I 254 QKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD--RGDVKVIMATNKI 331 (437)
T ss_dssp CSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC--SSSEEEEEEESCS
T ss_pred HCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC--CCCEEEEEECCCH
T ss_conf 14476699999999999986599189876122203667788877658999999999997247678--8997999957980
Q ss_pred CCCCHHHHH--HCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 998489970--078774358999999999999997115778865788999980399899999999999999999999999
Q 001735 881 FDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEE 958 (1019)
Q Consensus 881 ~~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~ll~~~~l~~dvdl~~LA~~TeG~SgaDL~~Lv~~Aa~~Aire~l~~~ 958 (1019)
+.||+|++| ||++.|+|++|+.++|.+||+.+++...+..++++..||..|+||||+||.++|.+|++.|+++.
T Consensus 332 d~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~---- 407 (437)
T 4b4t_I 332 ETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRER---- 407 (437)
T ss_dssp TTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTT----
T ss_pred HHCCHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC----
T ss_conf 5559988648860279980896999999999999648999976799999976799989999999999999999848----
Q ss_pred HHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 730788999876688899999999752999201
Q 001735 959 RKRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAY 991 (1019)
Q Consensus 959 ~~~~~~~~~~~~r~It~eDF~~Al~kv~Ps~s~ 991 (1019)
...|+++||..|++++.|+...
T Consensus 408 -----------~~~It~eDf~~Al~rv~~~~~~ 429 (437)
T 4b4t_I 408 -----------RMQVTAEDFKQAKERVMKNKVE 429 (437)
T ss_dssp -----------CSCBCHHHHHHHHHHHHHHHCC
T ss_pred -----------CCCCCHHHHHHHHHHHHCCCCH
T ss_conf -----------9966999999999987079873
No 8
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=370.87 Aligned_cols=250 Identities=34% Similarity=0.626 Sum_probs=230.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCH
Q ss_conf 98865444568299999999998731378011103998889934999937998599999999999299299995664211
Q 001735 724 EIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS 803 (1019)
Q Consensus 724 e~~vtfddIgGle~vk~~L~e~V~~pl~~pelf~k~gl~~p~kgILL~GPpGTGKT~LAkAIA~elg~pfi~Is~seL~s 803 (1019)
.|+++|+||+|++++++.|++.|.+|+.+|++|.+.+ ..|++|||||||||||||++|+|+|++++++|+.++++++.+
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g-~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s 253 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG-IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD 253 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC-CCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCC-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHCC
T ss_conf 9998966717859999999999999874999998679-897876999899998499999999998599989984146205
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCCCC--HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCC
Q ss_conf 22211899999999998720994998643024420159985--0588999999887641166656788579998149999
Q 001735 804 KWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAF--EHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPF 881 (1019)
Q Consensus 804 ~~~ge~e~~I~~iF~~A~k~~PSIIfIDEID~L~~~r~~~~--~~e~~~ril~eLL~~Ldgl~~~~~~~VlIIaTTN~p~ 881 (1019)
+|.|++++.++.+|..|+..+||||||||||++++.|.... ......+++++||..||++.. ..+++||+|||+|+
T Consensus 254 k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~--~~~vivI~ATNrp~ 331 (437)
T 4b4t_L 254 KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDN--LGQTKIIMATNRPD 331 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSC--TTSSEEEEEESSTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC--CCCEEEEEECCCCH
T ss_conf 5201789999999999986389646420443333333447887536899999999998346667--79869999339903
Q ss_pred CCCHHHHH--HCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98489970--0787743589999999999999971157788657889999803998999999999999999999999997
Q 001735 882 DLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEER 959 (1019)
Q Consensus 882 ~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~ll~~~~l~~dvdl~~LA~~TeG~SgaDL~~Lv~~Aa~~Aire~l~~~~ 959 (1019)
.||++++| ||++.|+|++|+.++|.+||+.++.......++|+..+|..|+||||+||.++|.+|++.|+++.
T Consensus 332 ~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~----- 406 (437)
T 4b4t_L 332 TLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDD----- 406 (437)
T ss_dssp SSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTT-----
T ss_pred HHCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC-----
T ss_conf 318978277710200135996999999999998658999864589999976899999999999999999999869-----
Q ss_pred HCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 30788999876688899999999752999201
Q 001735 960 KRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAY 991 (1019)
Q Consensus 960 ~~~~~~~~~~~r~It~eDF~~Al~kv~Ps~s~ 991 (1019)
...|+++||..|+.++.|+...
T Consensus 407 ----------~~~i~~~d~~~Al~~v~~~~k~ 428 (437)
T 4b4t_L 407 ----------RDHINPDDLMKAVRKVAEVKKL 428 (437)
T ss_dssp ----------CSSBCHHHHHHHHHHHHHTCC-
T ss_pred ----------CCCCCHHHHHHHHHHHHHCCCC
T ss_conf ----------9877999999999998750370
No 9
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=360.03 Aligned_cols=250 Identities=32% Similarity=0.511 Sum_probs=228.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 99886544456829999999999873137801110399888993499993799859999999999929929999566421
Q 001735 723 GEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT 802 (1019)
Q Consensus 723 ~e~~vtfddIgGle~vk~~L~e~V~~pl~~pelf~k~gl~~p~kgILL~GPpGTGKT~LAkAIA~elg~pfi~Is~seL~ 802 (1019)
..|+++|+||+|++++++.|++.+.+|+.+|++|.+.| ..|++|+|||||||||||++|+|+|++++++|+.++++++.
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g-~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~ 243 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG-IDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFV 243 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC-CCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTC
T ss_pred CCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCC-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCHHH
T ss_conf 89999888851699999999999999873999998679-99886588889899888999999999867996999330443
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCCCC--HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCC
Q ss_conf 122211899999999998720994998643024420159985--058899999988764116665678857999814999
Q 001735 803 SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAF--EHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP 880 (1019)
Q Consensus 803 s~~~ge~e~~I~~iF~~A~k~~PSIIfIDEID~L~~~r~~~~--~~e~~~ril~eLL~~Ldgl~~~~~~~VlIIaTTN~p 880 (1019)
++|.|++++.++.+|..|+..+||||||||+|.+++.|.... ......+++++||..|||+.. ..+++||+|||+|
T Consensus 244 ~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~--~~~v~vI~aTN~~ 321 (428)
T 4b4t_K 244 HKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQ--STNVKVIMATNRA 321 (428)
T ss_dssp CSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCS--SCSEEEEEEESCS
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC--CCCEEEEEECCCH
T ss_conf 14546059999999999997399746300224330355678788871899999999998438787--7997999961981
Q ss_pred CCCCHHHHH--HCCCCCCCC-CCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 998489970--078774358-99999999999999711577886578899998039989999999999999999999999
Q 001735 881 FDLDDAVIR--RLPRRIYVD-LPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEE 957 (1019)
Q Consensus 881 ~~LD~aLlr--RFd~~I~V~-lPd~eeR~eILk~ll~~~~l~~dvdl~~LA~~TeG~SgaDL~~Lv~~Aa~~Aire~l~~ 957 (1019)
+.||++++| ||++.|++| +|+.++|..||+.++++..+..++++..+|..|+||||+||.++|.+|++.|+++.
T Consensus 322 ~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~--- 398 (428)
T 4b4t_K 322 DTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN--- 398 (428)
T ss_dssp SSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT---
T ss_pred HHCCHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC---
T ss_conf 55696663687515999819999999999999998557999963589999977799889999999999999999879---
Q ss_pred HHHCCCCCCCCCCCCCCHHHHHHHHHHH-CCCCC
Q ss_conf 9730788999876688899999999752-99920
Q 001735 958 ERKRGKNDAAPVLRPLKLEDFIQSKAKV-GPSVA 990 (1019)
Q Consensus 958 ~~~~~~~~~~~~~r~It~eDF~~Al~kv-~Ps~s 990 (1019)
...|+++||..|+.++ +++..
T Consensus 399 ------------~~~i~~~d~~~A~~~~~~~~~~ 420 (428)
T 4b4t_K 399 ------------RYVILQSDLEEAYATQVKTDNT 420 (428)
T ss_dssp ------------CSSBCHHHHHHHHHHHSCSCCC
T ss_pred ------------CCCCCHHHHHHHHHHHHCCCCC
T ss_conf ------------9877999999999976176689
No 10
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=321.60 Aligned_cols=281 Identities=40% Similarity=0.713 Sum_probs=244.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH-CCCEEEEECCCCC
Q ss_conf 988654445682999999999987313780111039988899349999379985999999999992-9929999566421
Q 001735 724 EIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA-GANFISITGSTLT 802 (1019)
Q Consensus 724 e~~vtfddIgGle~vk~~L~e~V~~pl~~pelf~k~gl~~p~kgILL~GPpGTGKT~LAkAIA~el-g~pfi~Is~seL~ 802 (1019)
.+.++|+||+|++.+++.|++.+.+|+.++++|... ..|++++||+||||||||++|+++|+++ +.+|+.++++++.
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~--~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK--RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 83 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTT--CCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSC
T ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHCC--CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHH
T ss_conf 999998873498999999999999987698977178--899954999899996099999999998089967998749977
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCC
Q ss_conf 12221189999999999872099499864302442015998505889999998876411666567885799981499999
Q 001735 803 SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFD 882 (1019)
Q Consensus 803 s~~~ge~e~~I~~iF~~A~k~~PSIIfIDEID~L~~~r~~~~~~e~~~ril~eLL~~Ldgl~~~~~~~VlIIaTTN~p~~ 882 (1019)
+.|.|+.+..++.+|..++...|+||||||||.+.+.+... .....++++++|+..++++.. ...+++||++||.++.
T Consensus 84 ~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~ld~~~~-~~~~v~vI~atn~~~~ 161 (322)
T 1xwi_A 84 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN-ESEAARRIKTEFLVQMQGVGV-DNDGILVLGATNIPWV 161 (322)
T ss_dssp CSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC-CTTHHHHHHHHHHHHHHCSSS-CCTTEEEEEEESCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHCCCCCCC-CCHHHHHHHHHHHHHHHCCCC-CCCCEEEEEECCCCCC
T ss_conf 64311999999999999986299589960478753556665-335899999999999743456-6888799996698565
Q ss_pred CCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCC-CCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 8489970078774358999999999999997115778-865788999980399899999999999999999999999730
Q 001735 883 LDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKR 961 (1019)
Q Consensus 883 LD~aLlrRFd~~I~V~lPd~eeR~eILk~ll~~~~l~-~dvdl~~LA~~TeG~SgaDL~~Lv~~Aa~~Aire~l~~~~~~ 961 (1019)
+|++++|||+..+++++|+.++|..|++.++...... .+.++..|+..+.||+|+||..+|.+|++.++++........
T Consensus 162 ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~~~~~ 241 (322)
T 1xwi_A 162 LDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFK 241 (322)
T ss_dssp SCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHCSEEE
T ss_pred CCHHHHHHCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999931676899579699999999999972178889999999999976999999999999999999999998645555
Q ss_pred C-----C-----------------------------CCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHCHHHHHHHHHHHC
Q ss_conf 7-----8-----------------------------89998766888999999997529992010240899999999738
Q 001735 962 G-----K-----------------------------NDAAPVLRPLKLEDFIQSKAKVGPSVAYDAASMNELRKWNEQYG 1007 (1019)
Q Consensus 962 ~-----~-----------------------------~~~~~~~r~It~eDF~~Al~kv~Ps~s~~~~~m~~lvkW~diyG 1007 (1019)
. . ........+|+++||..|+.+++||++.+ .+..+.+|+..||
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~~~~--~~~~~~~~~~~~~ 319 (322)
T 1xwi_A 242 KVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEH--DLLKLKKFTEDFG 319 (322)
T ss_dssp EEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSCCHH--HHHHHHHHHHTTC
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHHC
T ss_conf 42144333310000000255654441000012123650003578708999999998679999999--9999999999974
Q ss_pred CCC
Q ss_conf 998
Q 001735 1008 EGG 1010 (1019)
Q Consensus 1008 ~~g 1010 (1019)
.+|
T Consensus 320 ~~~ 322 (322)
T 1xwi_A 320 QEG 322 (322)
T ss_dssp SCC
T ss_pred CCC
T ss_conf 699
Done!