BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001736
(1019 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IUU|A Chain A, Crystal Structure Of Putative Metallopeptidase
(Yp_676511.1) From Mesorhizobium Sp. Bnc1 At 2.13 A
Resolution
Length = 495
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%)
Query: 286 NYVVERSTGWALTHPLSVEEYEKMKKKQLKPEFLDMVPWYSGTSADLFKTVFDLLVSVTV 345
N V + G A TH ++ E + +K + F ++ P+ +GT AD +VTV
Sbjct: 347 NATVRXAVGGAFTHSVAPLERDWTVRKLCRARFTNIGPYXAGTEADFGDAAVLTCDAVTV 406
Query: 346 FV 347
V
Sbjct: 407 IV 408
>pdb|1N4A|A Chain A, The Ligand Bound Structure Of E.coli Btuf, The Periplasmic
Binding Protein For Vitamin B12
pdb|1N4A|B Chain B, The Ligand Bound Structure Of E.coli Btuf, The Periplasmic
Binding Protein For Vitamin B12
pdb|1N4D|A Chain A, The Ligand-Free Structure Of E Coli Btuf, The Periplasmic
Binding Protein For Vitamin B12
pdb|1N4D|B Chain B, The Ligand-Free Structure Of E Coli Btuf, The Periplasmic
Binding Protein For Vitamin B12
Length = 252
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Query: 450 FEYALQPPPWYKKDHVAVNKPEV------PSGVPELKQYDGPQCYI--IPGNHDWFD 498
F+ + P P ++ V P+ P +P++KQY G Q I IP DWF+
Sbjct: 167 FKDSRVPWPQVSREQVLARSPQAIVITGGPDQIPKIKQYWGEQLKIPVIPLTSDWFE 223
>pdb|1N2Z|A Chain A, 2.0 Angstrom Structure Of Btuf, The Vitamin B12 Binding
Protein Of E. Coli
pdb|1N2Z|B Chain B, 2.0 Angstrom Structure Of Btuf, The Vitamin B12 Binding
Protein Of E. Coli
Length = 245
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Query: 450 FEYALQPPPWYKKDHVAVNKPEV------PSGVPELKQYDGPQCYI--IPGNHDWFD 498
F+ + P P ++ V P+ P +P++KQY G Q I IP DWF+
Sbjct: 168 FKDSRVPWPQVSREQVLARSPQAIVITGGPDQIPKIKQYWGEQLKIPVIPLTSDWFE 224
>pdb|4DBL|E Chain E, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|J Chain J, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4FI3|F Chain F, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 255
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Query: 450 FEYALQPPPWYKKDHVAVNKPEV------PSGVPELKQYDGPQCYI--IPGNHDWFD 498
F+ + P P ++ V P+ P +P++KQY G Q I IP DWF+
Sbjct: 169 FKDSRVPWPQVSREQVLARSPQAIVITGGPDQIPKIKQYWGEQLKIPVIPLTSDWFE 225
>pdb|2QI9|F Chain F, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 245
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Query: 450 FEYALQPPPWYKKDHVAVNKPEV------PSGVPELKQYDGPQCYI--IPGNHDWFD 498
F+ + P P ++ V P+ P +P++KQY G Q I IP DWF+
Sbjct: 168 FKDSRVPWPQVSREQVLARSPQAIVITGGPDQIPKIKQYWGEQLKIPVIPLTSDWFE 224
>pdb|2CW7|A Chain A, Crystal Structure Of Intein Homing Endonuclease Ii
Length = 537
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 13/106 (12%)
Query: 402 RLLAQPHIRVTRDDSVFTLPRGDVLLIGGDLAYPNPSAFTYERRLFRPFEYALQPPPWYK 461
RL + I++T S+F++ G+++ + GD P RRL P +
Sbjct: 83 RLKSGRRIKITSGHSLFSVRNGELVEVTGDELKPG-DLVAVPRRLELP-----------E 130
Query: 462 KDHVAVNKPEVPSGVPELKQYDGPQCYIIPGNHDWFDGLNTFMRFI 507
++HV +N E+ G PE + D + G ++F G+ +R+I
Sbjct: 131 RNHV-LNLVELLLGTPEEETLDIVMTIPVKGKKNFFKGMLRTLRWI 175
>pdb|2YK7|A Chain A, Structure Of Neisseria Los-Specific Sialyltransferase
(Nst), In Complex With Cmp-3f-Neu5ac
Length = 326
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 548 VYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGK 589
+ Q K ++ + GER V++M+ N D+YFN + K
Sbjct: 10 ILQMKVAERIMAQHPGERFYVVLMSENNNEKYDYYFNQIKDK 51
>pdb|2YK6|A Chain A, Structure Of Neisseria Los-Specific Sialyltransferase
(Nst), In Complex With Cdp
Length = 326
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 548 VYQFKFFAELVKEQVGERDSVIIMTHEPNWLLDWYFNNVSGK 589
+ Q K ++ + GER V++M+ N D+YFN + K
Sbjct: 10 ILQMKVAERIMAQHPGERFYVVLMSENRNEKYDYYFNQIKDK 51
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.457
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,152,968
Number of Sequences: 62578
Number of extensions: 1408781
Number of successful extensions: 3200
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3197
Number of HSP's gapped (non-prelim): 9
length of query: 1019
length of database: 14,973,337
effective HSP length: 108
effective length of query: 911
effective length of database: 8,214,913
effective search space: 7483785743
effective search space used: 7483785743
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)