BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001739
(1019 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BDL|A Chain A, Crystal Structure Of A Truncated Human Tudor-Sn
Length = 570
Score = 227 bits (579), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 164/470 (34%), Positives = 248/470 (52%), Gaps = 45/470 (9%)
Query: 537 GVNVAELVVSRGLGNVINHR-DFEERSNYYDXXXXXXXXXXXXXXXCYSSKEPPVMHIQD 595
G+N+AE +VS+GL VI +R D ++RS++YD +S KE P+ + D
Sbjct: 129 GINIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGKGLHSKKEVPIHRVAD 188
Query: 596 LTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCP--GR 653
++ +KA+ FLPFLQR+ R AVVEYV SG R K+ +PKETC I F +G+ CP R
Sbjct: 189 IS-GDTQKAKQFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLITFLLAGIECPRGAR 247
Query: 654 N--------ERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWESRTNVAVILLEA 705
N E +S EA L ++ +LQR+VE+EVE++D+ G F+G L N++V+L+E
Sbjct: 248 NLPGLVQEGEPFSEEATLFTKELVLQREVEVEVESMDKAGNFIGWLHIDGANLSVLLVEH 307
Query: 706 GLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVEG--EEVSNGAAVEGKQKEVL 763
L+K+ F ++R L AE++AK +K K+W +Y E EEV + +
Sbjct: 308 ALSKVH--FTAERSSYYKSLLSAEEAAKQKKEKVWAHYEEQPVEEVMPVLEEKERSASYK 365
Query: 764 KVVVTEILGGGKFYVQQV--GDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSA 821
V VTEI FYVQ V G Q + + + + + PV G++ P++GE +A+F
Sbjct: 366 PVFVTEITDDLHFYVQDVETGTQ-LEKLMENMRNDIASHPPVEGSYAPRRGEFCIAKF-V 423
Query: 822 DNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSS--TPPLAQL 879
D W RA + EKVES K VFYIDYGN+E++P +L + P+ S+ P A
Sbjct: 424 DGEWYRARV-----EKVES-PAKIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATE 477
Query: 880 CSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFRALVEERDSSXXXXXXXXXXXXXHVT 939
+ A+I++P +D+ +A + + N+ VE + HVT
Sbjct: 478 YAFAFIQVPQ-DDDARTDAVDSVVRDIQNTQCLLN--VEHLSAG-----------CPHVT 523
Query: 940 LVAVDAEISINTLMVQEGLARVERRKRWGSRDRQAALENLEKFQEEAKTA 989
L D++ + +V+EGL VE RK + Q + QE AK+A
Sbjct: 524 LQFADSKGDVGLGLVKEGLVMVEVRK---EKQFQKVITEYLNAQESAKSA 570
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 106/376 (28%), Positives = 156/376 (41%), Gaps = 80/376 (21%)
Query: 12 YRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRL----------ARRGGLDE 61
+ A+V V + D++V+ S KT+ LSSI PRL R D
Sbjct: 25 FVAKVMQVLNADAIVVKLNSGDY------KTIHLSSIRPPRLEGENTQDKNKKLRPLYDI 78
Query: 62 PFAWDSREFLRKLCIGK-VTFRVDY---------AVPNIG-REFGTVILGDKNVAMLVVS 110
P+ +++REFLRK IGK V VDY VP R TV +G N+A +VS
Sbjct: 79 PYMFEAREFLRKKLIGKKVNVTVDYIRPASPATETVPAFSERTCATVTIGGINIAEALVS 138
Query: 111 EGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSK--VPGAAEASIRNLPPSAIG 168
+G A V + S ELL E +A G G SK VP A I G
Sbjct: 139 KGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGKGLHSKKEVPIHRVADIS-------G 191
Query: 169 DSSNFNAMALLDANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGXXXXXXXXXXX 228
D+ GR + +VE GS L++YL E + +AG
Sbjct: 192 DTQKAKQFLPFLQRAGRS-EAVVEYVFSGSRLKLYLPKETCLITFLLAG----------- 239
Query: 229 XXXDTDTEETNGDVSAAEAVAPLNSAQRLXXXXXXXXXXXXDEPFALDAKYFTEMRVLNR 288
+ A+ L EPF+ +A FT+ VL R
Sbjct: 240 -------------------IECPRGARNL------PGLVQEGEPFSEEATLFTKELVLQR 274
Query: 289 EVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKA 348
EV + +E +DK N IG + + DG +L++ LVE+ L+K + ++A + L +
Sbjct: 275 EVEVEVESMDKAGNFIGWL-HIDG---ANLSVLLVEHALSK-VHFTAE--RSSYYKSLLS 327
Query: 349 ADLQAKKTRLRMWTNY 364
A+ AK+ + ++W +Y
Sbjct: 328 AEEAAKQKKEKVWAHY 343
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 14/90 (15%)
Query: 376 DQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGNPRKDEK------- 428
D+ F KV++V++ D I+V +S Y + ++LSSIR P++ +K
Sbjct: 22 DKQFVAKVMQVLNADAIVVKLNSGDY------KTIHLSSIRPPRLEGENTQDKNKKLRPL 75
Query: 429 -PAAYAREAREFLRTRLIGRQVNVQMEYSR 457
Y EAREFLR +LIG++VNV ++Y R
Sbjct: 76 YDIPYMFEAREFLRKKLIGKKVNVTVDYIR 105
>pdb|3OMG|A Chain A, Structure Of Human Snd1 Extended Tudor Domain In Complex
With The Symmetrically Dimethylated Arginine Piwil1
Peptide R14me2s
pdb|3OMG|B Chain B, Structure Of Human Snd1 Extended Tudor Domain In Complex
With The Symmetrically Dimethylated Arginine Piwil1
Peptide R14me2s
pdb|3OMC|A Chain A, Structure Of Human Snd1 Extended Tudor Domain In Complex
With The Symmetrically Dimethylated Arginine Piwil1
Peptide R4me2s
pdb|3OMC|B Chain B, Structure Of Human Snd1 Extended Tudor Domain In Complex
With The Symmetrically Dimethylated Arginine Piwil1
Peptide R4me2s
Length = 261
Score = 109 bits (272), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 90/280 (32%), Positives = 139/280 (49%), Gaps = 31/280 (11%)
Query: 732 AKSQKLKIWENYVEG--EEVSNGAAVEGKQKEVLKVVVTEILGGGKFYVQQV--GDQKVA 787
AK +K K+W +Y E EEV + + V VTEI FYVQ V G Q +
Sbjct: 1 AKQKKEKVWAHYEEQPVEEVMPVLEEKERSASYKPVFVTEITDDLHFYVQDVETGTQ-LE 59
Query: 788 SVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEV 847
+ + + + PV G++ P++GE +A+F D W RA + EKVES K V
Sbjct: 60 KLMENMRNDIASHPPVEGSYAPRRGEFCIAKF-VDGEWYRARV-----EKVESPA-KIHV 112
Query: 848 FYIDYGNQELVPYNKLRPIDPSLSS--TPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEH 905
FYIDYGN+E++P +L + P+ S+ P A + A+I++P +D+ +A + +
Sbjct: 113 FYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQ-DDDARTDAVDSVVRD 171
Query: 906 TYNSSNEFRALVEERDSSXXXXXXXXXXXXXHVTLVAVDAEISINTLMVQEGLARVERRK 965
N+ + L+ S HVTL D++ + +V+EGL VE RK
Sbjct: 172 IQNT----QCLLNVEHLS---------AGCPHVTLQFADSKGDVGLGLVKEGLVMVEVRK 218
Query: 966 RWGSRDRQAALENLEKFQEEAKTARIGMWQYGDIQSDDED 1005
+ Q + QE AK+AR+ +W+YGD ++DD D
Sbjct: 219 ---EKQFQKVITEYLNAQESAKSARLNLWRYGDFRADDAD 255
>pdb|2HQX|A Chain A, Crystal Structure Of Human P100 Tudor Domain Conserved
Region
pdb|2HQX|B Chain B, Crystal Structure Of Human P100 Tudor Domain Conserved
Region
pdb|2HQE|A Chain A, Crystal Structure Of Human P100 Tudor Domain: Large Fragment
pdb|2HQE|B Chain B, Crystal Structure Of Human P100 Tudor Domain: Large Fragment
Length = 246
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 122/244 (50%), Gaps = 27/244 (11%)
Query: 765 VVVTEILGGGKFYVQQV-GDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADN 823
V VTEI FYVQ V + + + + + PV G++ P++GE +A+F D
Sbjct: 21 VFVTEITDDLHFYVQDVETGTQFQKLMENMRNDIASHPPVEGSYAPRRGEFCIAKF-VDG 79
Query: 824 SWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSS--TPPLAQLCS 881
W RA + EKVES K VFYIDYGN+E++P +L + P+ S+ P A +
Sbjct: 80 EWYRARV-----EKVESPA-KIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYA 133
Query: 882 LAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFRALVEERDSSXXXXXXXXXXXXXHVTLV 941
A+I++P +D+ +A + + N+ + L+ S HVTL
Sbjct: 134 FAFIQVPQ-DDDARTDAVDSVVRDIQNT----QCLLNVEHLS---------AGCPHVTLQ 179
Query: 942 AVDAEISINTLMVQEGLARVERRKRWGSRDRQAALENLEKFQEEAKTARIGMWQYGDIQS 1001
D++ + +V+EGL VE RK + Q + QE AK+AR+ +W+YGD ++
Sbjct: 180 FADSKGDVGLGLVKEGLVMVEVRK---EKQFQKVITEYLNAQESAKSARLNLWRYGDFRA 236
Query: 1002 DDED 1005
DD D
Sbjct: 237 DDAD 240
>pdb|2WAC|A Chain A, Extended Tudor Domain Of Drosophila Melanogaster Tudor-Sn
( P100)
pdb|2WAC|B Chain B, Extended Tudor Domain Of Drosophila Melanogaster Tudor-Sn
( P100)
Length = 218
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 113/235 (48%), Gaps = 24/235 (10%)
Query: 765 VVVTEILGGGKFYVQQV-GDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADN 823
V+VTEI F+ Q V K+ S+ +L + P+ G++ PK+G++V AQF+ DN
Sbjct: 7 VIVTEITETLTFFAQSVESGSKLESLMSKLHADFQSNPPIAGSYTPKRGDLVAAQFTLDN 66
Query: 824 SWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLA 883
W RA + E+V+ N V YIDYGN+E +P N+L + P+ SS P A +LA
Sbjct: 67 QWYRAKV-----ERVQGSNAT--VLYIDYGNKETLPTNRLAALPPAFSSEKPYATEYALA 119
Query: 884 YIKIPALEDEYGPEAAEFLNEHTYNSSNEFRALVEERDSSXXXXXXXXXXXXXHVTLVAV 943
+ +P ++E EA +E N + ++ S TL
Sbjct: 120 LVALPT-DNEDKEEALRAFSEDVLNHKVQLNVELKVTGSPNL------------ATLRDP 166
Query: 944 DAEISINTLMVQEGLARVERRKRWGSRDRQAALENLEKFQEEAKTARIGMWQYGD 998
++ +V EGL E+R G R + ++ + QE A+ A + +W+YGD
Sbjct: 167 TTKVDFGKQLVAEGLVLAEQR---GERKLKELVDQYKAAQEAARVAHLAIWKYGD 218
>pdb|2O4X|A Chain A, Crystal Structure Of Human P100 Tudor Domain
Length = 217
Score = 90.9 bits (224), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 115/235 (48%), Gaps = 27/235 (11%)
Query: 765 VVVTEILGGGKFYVQQV-GDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADN 823
V VTEI FYVQ V + + + + + PV G++ P++GE +A+F D
Sbjct: 7 VFVTEITDDLHFYVQDVETGTQFEKLMENMRNDIASHPPVEGSYAPRRGEFCIAKF-VDG 65
Query: 824 SWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSS--TPPLAQLCS 881
W RA + EKVES K VFYIDYGN+E++P +L + P+ S+ P A +
Sbjct: 66 EWYRARV-----EKVES-PAKIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYA 119
Query: 882 LAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFRALVEERDSSXXXXXXXXXXXXXHVTLV 941
A+I++P +D+ +A + + N+ + L+ S HVTL
Sbjct: 120 FAFIQVPQ-DDDARTDAVDSVVRDIQNT----QCLLNVEHLS---------AGCPHVTLQ 165
Query: 942 AVDAEISINTLMVQEGLARVERRKRWGSRDRQAALENLEKFQEEAKTARIGMWQY 996
D++ + +V+EGL VE RK + Q + QE AK+AR+ +W+Y
Sbjct: 166 FADSKGDVGLGLVKEGLVMVEVRK---EKQFQKVITEYLNAQESAKSARLNLWRY 217
>pdb|2E6N|A Chain A, Solution Structure Of The Tudor Domain Of Staphylococcal
Nuclease Domain-Containing Protein 1
Length = 104
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 7/83 (8%)
Query: 802 PVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYN 861
PV G++ P++GE +A+F D W RA + EKVES K VFYIDYGN+E++P
Sbjct: 27 PVEGSYAPRRGEFCIAKF-VDGEWYRARV-----EKVES-PAKIHVFYIDYGNREVLPST 79
Query: 862 KLRPIDPSLSSTPPLAQLCSLAY 884
+L + P+ S+ AQ A+
Sbjct: 80 RLGTLSPAFSTRVLPAQATEYAF 102
>pdb|2O4X|B Chain B, Crystal Structure Of Human P100 Tudor Domain
Length = 91
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 7/71 (9%)
Query: 802 PVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYN 861
PV G++ P++GE +A+F D W RA + EKVES K VFYIDYGN+E++P
Sbjct: 19 PVEGSYAPRRGEFCIAKF-VDGEWYRARV-----EKVES-PAKIHVFYIDYGNREVLPST 71
Query: 862 KLRPIDPSLSS 872
+L + P+ S+
Sbjct: 72 RLGTLSPAFST 82
>pdb|4B9W|A Chain A, Structure Of Extended Tudor Domain Td3 From Mouse Tdrd1 In
Complex With Mili Peptide Containing Dimethylarginine
45.
pdb|4B9W|B Chain B, Structure Of Extended Tudor Domain Td3 From Mouse Tdrd1 In
Complex With Mili Peptide Containing Dimethylarginine 45
Length = 201
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 56/118 (47%), Gaps = 11/118 (9%)
Query: 774 GKFYVQQVGD---QKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMI 830
G+FY + D +K+ + Q LA Q+ P F + G A FS D +W RA++
Sbjct: 30 GEFYCHFLKDDALEKLDDLNQSLADYCAQKPP--NGFKAEIGRPCCAFFSGDGNWYRALV 87
Query: 831 VNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIP 888
+E + S N K V ++DYGN E V ++L+ I P P C L I+ P
Sbjct: 88 ----KEILPSGNVK--VHFVDYGNVEEVTTDQLQAILPQFLLLPFQGMQCWLVDIQPP 139
>pdb|4B9X|A Chain A, Structure Of Extended Tudor Domain Td3 From Mouse Tdrd1
Length = 226
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 56/118 (47%), Gaps = 11/118 (9%)
Query: 774 GKFYVQQVGD---QKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMI 830
G+FY + D +K+ + Q LA Q+ P F + G A FS D +W RA++
Sbjct: 30 GEFYCHFLKDDALEKLDDLNQSLADYCAQKPP--NGFKAEIGRPCCAFFSGDGNWYRALV 87
Query: 831 VNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIP 888
+E + S N K V ++DYGN E V ++L+ I P P C L I+ P
Sbjct: 88 ----KEILPSGNVK--VHFVDYGNVEEVTTDQLQAILPQFLLLPFQGMQCWLVDIQPP 139
>pdb|4J1M|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs R105e At Cryogenic Temperature
Length = 143
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 9/134 (6%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G K++ + + F V P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVE 61
Query: 672 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 726
+IEVE D+ G L ++ V L+E GLAK+ + + + LL
Sbjct: 62 NAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVEQGLAKVAYVYKGNNTHE-QLLR 120
Query: 727 QAEKSAKSQKLKIW 740
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 14/99 (14%)
Query: 270 DEPFALDAKYFTEMRVLN-REVRIVLEG---VDKFKNLIGSVFYPDGETAKDLAMELVEN 325
+E + +A FT+ V N +++ + + DK+ + + Y DG+ + LVE
Sbjct: 45 NEKYGPEASAFTKKMVENAKKIEVEFDKGQRTDKYGRGLAYI-YADGKMVNEA---LVEQ 100
Query: 326 GLAK--YIEWSANMMEEDAKRRLKAADLQAKKTRLRMWT 362
GLAK Y+ N E+ L+ A+ QAKK +L +W+
Sbjct: 101 GLAKVAYVYKGNNTHEQ----LLRKAEAQAKKEKLNIWS 135
>pdb|4IUN|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs R126e At Cryogenic Temperature
Length = 143
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 9/134 (6%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G K++ + + F V P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVE 61
Query: 672 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 726
+IEVE D+ G L ++ V L+ GLAK+ + + + LLE
Sbjct: 62 NAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLE 120
Query: 727 QAEKSAKSQKLKIW 740
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|3HEJ|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+p Cryogenic Temperature
pdb|3HEJ|D Chain D, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+p Cryogenic Temperature
pdb|3HEJ|B Chain B, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+p Cryogenic Temperature
pdb|3HEJ|C Chain C, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+p Cryogenic Temperature
Length = 143
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 9/128 (7%)
Query: 618 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 677
PA + + G K++ + + F V P NE+Y EA R+K+++ +IE
Sbjct: 11 PATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAF-RKKMVENAKKIE 67
Query: 678 VE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSA 732
VE D+ G L ++ V L+ GLAK+ + + + LL +AE A
Sbjct: 68 VEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLRKAEAQA 126
Query: 733 KSQKLKIW 740
K +KL IW
Sbjct: 127 KKEKLNIW 134
>pdb|3MHB|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs L38a At Cryogenic Temperature
Length = 143
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 9/134 (6%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G K++ + + F V P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGDTVKLMYKGQ--PMTFRLLAVDTPEFNEKYGPEASAFTK-KMVE 61
Query: 672 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 726
+IEVE D+ G L ++ V L+ GLAK+ + + + LL
Sbjct: 62 NAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLR 120
Query: 727 QAEKSAKSQKLKIW 740
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|3LX0|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs D21n At Cryogenic Temperature
Length = 143
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 9/134 (6%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G+ K++ + + F V P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGNTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVE 61
Query: 672 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 726
+IEVE D+ G L ++ V L+ GLAK+ + + + LL
Sbjct: 62 NAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLR 120
Query: 727 QAEKSAKSQKLKIW 740
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|3SK8|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs M98g Apo Protein At Cryogenic Temperature
pdb|3S9W|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs M98g Bound To Ca2+ And
Thymidine-5',3'-Diphosphate At Cryogenic Temperature
Length = 143
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 9/134 (6%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G K++ + + F V P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVE 61
Query: 672 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 726
+IEVE D+ G L ++ V L+ GLAK+ + + + LL
Sbjct: 62 NAKKIEVEFDKGQRTDKYGRGLAYIYADGKGVNEALVRQGLAKVAYVYKGNNTHE-QLLR 120
Query: 727 QAEKSAKSQKLKIW 740
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|4IAL|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs H121e At Cryogenic Temperature
Length = 143
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 9/134 (6%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G K++ + + F V P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVE 61
Query: 672 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 726
+IEVE D+ G L ++ V L+ GLAK+ + + + LL
Sbjct: 62 NAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNT-EEQLLR 120
Query: 727 QAEKSAKSQKLKIW 740
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
Score = 29.6 bits (65), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 14/99 (14%)
Query: 270 DEPFALDAKYFTEMRVLN-REVRIVLEG---VDKFKNLIGSVFYPDGETAKDLAMELVEN 325
+E + +A FT+ V N +++ + + DK+ + + Y DG+ + LV
Sbjct: 45 NEKYGPEASAFTKKMVENAKKIEVEFDKGQRTDKYGRGLAYI-YADGKMVNEA---LVRQ 100
Query: 326 GLAK--YIEWSANMMEEDAKRRLKAADLQAKKTRLRMWT 362
GLAK Y+ + N EE + L+ A+ QAKK +L +W+
Sbjct: 101 GLAKVAYV-YKGNNTEE---QLLRKAEAQAKKEKLNIWS 135
>pdb|3T13|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs A69g At Cryogenic Temperature
pdb|3T13|B Chain B, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs A69g At Cryogenic Temperature
pdb|3SR1|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs A69g Bound To Ca2+ And
Thymidine-5',3'-Diphosphate At Cryogenic Temperature
Length = 143
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 9/134 (6%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G K++ + + F V P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVE 61
Query: 672 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 726
+IEVE D+ G L ++ V L+ GLAK+ + + + LL
Sbjct: 62 NGKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLR 120
Query: 727 QAEKSAKSQKLKIW 740
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|3D4D|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs Y91e At Cryogenic Temperature
pdb|3D4D|B Chain B, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs Y91e At Cryogenic Temperature
Length = 143
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 9/134 (6%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G K++ + + F V P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVE 61
Query: 672 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 726
+IEVE D+ G L ++ V L+ GLAK+ + + + LL
Sbjct: 62 NAKKIEVEFDKGQRTDKYGRGLAEIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLR 120
Query: 727 QAEKSAKSQKLKIW 740
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|4HTH|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+viagla At Cryogenic Temperature
Length = 143
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 9/134 (6%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G K++ + + F V P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGDTVKLMYKGQ--PMVFRLLLVDIPEFNEKYGPEAAAFTK-KMVE 61
Query: 672 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 726
+IEVE D+ G L ++ V L+ GLAK+ + + + LL
Sbjct: 62 NAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLR 120
Query: 727 QAEKSAKSQKLKIW 740
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|4IZ8|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs H8e At Cryogenic Temperature
Length = 143
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 9/128 (7%)
Query: 618 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 677
PA + + G K++ + + F V P NE+Y EA + K+++ +IE
Sbjct: 11 PATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVENAKKIE 67
Query: 678 VE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSA 732
VE D+ G L ++ V L+ GLAK+ + + + LL +AE A
Sbjct: 68 VEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLRKAEAQA 126
Query: 733 KSQKLKIW 740
K +KL IW
Sbjct: 127 KKEKLNIW 134
>pdb|3BDC|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs At Cryogenic Temperature
Length = 143
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 9/134 (6%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G K++ + + F V P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVE 61
Query: 672 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 726
+IEVE D+ G L ++ V L+ GLAK+ + + + LL
Sbjct: 62 NAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLR 120
Query: 727 QAEKSAKSQKLKIW 740
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|4F8M|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs V23iI92V AT CRYOGENIC TEMPERATURE
Length = 143
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 9/134 (6%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G K++ + + F V P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGDTIKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVE 61
Query: 672 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 726
+IEVE D+ G L ++ V L+ GLAK+ + + + LL
Sbjct: 62 NAKKIEVEFDKGQRTDKYGRGLAYVYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLR 120
Query: 727 QAEKSAKSQKLKIW 740
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|3MXP|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs T62a At Cryogenic Temperature
pdb|3R3O|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs T62a At Cryogenic Temperature And With High
Redundancy
Length = 143
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 9/134 (6%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G K++ + + F V P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFAK-KMVE 61
Query: 672 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 726
+IEVE D+ G L ++ V L+ GLAK+ + + + LL
Sbjct: 62 NAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLR 120
Query: 727 QAEKSAKSQKLKIW 740
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|3TME|A Chain A, Crystal Structure Of Staphylcoccal Nulease Variant
Delta+nviagla V23e At Cryogenic Temperature
Length = 143
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 9/134 (6%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G+ K++ + + F V P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGNTEKLMYKGQ--PMVFRLLLVDIPEFNEKYGPEAAAFTK-KMVE 61
Query: 672 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 726
+IEVE D+ G L ++ V L+ GLAK+ + + + LL
Sbjct: 62 NAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLR 120
Query: 727 QAEKSAKSQKLKIW 740
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|3OSO|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs L25a At Cryogenic Temperature
Length = 143
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 9/134 (6%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G K + + + F V P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGDTVKAMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVE 61
Query: 672 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 726
+IEVE D+ G L ++ V L+ GLAK+ + + + LL
Sbjct: 62 NAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLR 120
Query: 727 QAEKSAKSQKLKIW 740
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|3SK4|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs D21nV23E AT CRYOGENIC TEMPERATURE
Length = 143
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 9/134 (6%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G+ K++ + + F V P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGNTEKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVE 61
Query: 672 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 726
+IEVE D+ G L ++ V L+ GLAK+ + + + LL
Sbjct: 62 NAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLR 120
Query: 727 QAEKSAKSQKLKIW 740
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|3PMF|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs V23a At Cryogenic Temperature
Length = 143
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 9/134 (6%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G K++ + + F V P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGDTAKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVE 61
Query: 672 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 726
+IEVE D+ G L ++ V L+ GLAK+ + + + LL
Sbjct: 62 NAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLR 120
Query: 727 QAEKSAKSQKLKIW 740
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|3NQT|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs V66a At Cryogenic Temperature
Length = 143
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 9/134 (6%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G K++ + + F V P NE+Y EA + K+ +
Sbjct: 5 KKLHKEPATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMAE 61
Query: 672 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 726
+IEVE D+ G L ++ V L+ GLAK+ + + + LL
Sbjct: 62 NAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLR 120
Query: 727 QAEKSAKSQKLKIW 740
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|3QOJ|A Chain A, Cryogenic Structure Of Staphylococcal Nuclease Variant
D+phsV23K
Length = 143
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 9/134 (6%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G K++ + + F V P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGDTKKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVE 61
Query: 672 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 726
+IEVE D+ G L ++ V L+ GLAK+ + + + LL
Sbjct: 62 NAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLR 120
Query: 727 QAEKSAKSQKLKIW 740
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|3NP8|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs L36a At Cryogenic Temperature
Length = 143
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 9/134 (6%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G K++ + + F V P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGDTVKLMYKGQ--PMTFRALLVDTPEFNEKYGPEASAFTK-KMVE 61
Query: 672 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 726
+IEVE D+ G L ++ V L+ GLAK+ + + + LL
Sbjct: 62 NAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLR 120
Query: 727 QAEKSAKSQKLKIW 740
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|3QOL|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
D+phsV23E AT PH 6 Determined At 100 K
Length = 143
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 9/134 (6%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G K++ + + F V P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGDTEKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVE 61
Query: 672 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 726
+IEVE D+ G L ++ V L+ GLAK+ + + + LL
Sbjct: 62 NAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLR 120
Query: 727 QAEKSAKSQKLKIW 740
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|3D8G|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs I72r At Cryogenic Temperature
Length = 143
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 7/127 (5%)
Query: 618 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKI---LQRDV 674
PA + + G K++ + + F V P NE+Y EA ++ + +R+V
Sbjct: 11 PATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTKKMVENAKKREV 68
Query: 675 EIEV-ETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAK 733
E + + D+ G L ++ V L+ GLAK+ + + + LL +AE AK
Sbjct: 69 EFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLRKAEAQAK 127
Query: 734 SQKLKIW 740
+KL IW
Sbjct: 128 KEKLNIW 134
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 14/99 (14%)
Query: 270 DEPFALDAKYFTEMRVLNREVRIVL----EGVDKFKNLIGSVFYPDGETAKDLAMELVEN 325
+E + +A FT+ V N + R V + DK+ + + Y DG+ + LV
Sbjct: 45 NEKYGPEASAFTKKMVENAKKREVEFDKGQRTDKYGRGLAYI-YADGKMVNEA---LVRQ 100
Query: 326 GLAK--YIEWSANMMEEDAKRRLKAADLQAKKTRLRMWT 362
GLAK Y+ N E+ L+ A+ QAKK +L +W+
Sbjct: 101 GLAKVAYVYKGNNTHEQ----LLRKAEAQAKKEKLNIWS 135
>pdb|3ERQ|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant L25k
At Cryogenic Temperature
Length = 143
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 7/105 (6%)
Query: 641 IAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESR 695
+ F V P NE+Y EA + K+++ +IEVE D+ G L ++
Sbjct: 32 MTFRLLLVDTPEFNEKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADG 90
Query: 696 TNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
V L+ GLAK+ + + + LL +AE AK +KL IW
Sbjct: 91 KMVNEALVRQGLAKVAYVYKGNNTHE-QLLRKAEAQAKKEKLNIW 134
>pdb|3MEH|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs I92a At Cryogenic Temperature
Length = 143
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 9/134 (6%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G K++ + + F V P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVE 61
Query: 672 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 726
+IEVE D+ G L + V L+ GLAK+ + + + LL
Sbjct: 62 NAKKIEVEFDKGQRTDKYGRGLAYAYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLR 120
Query: 727 QAEKSAKSQKLKIW 740
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|3DHQ|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs A90r At Cryogenic Temperature
Length = 143
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 9/128 (7%)
Query: 618 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 677
PA + + G K++ + + F V P NE+Y EA + K+++ +IE
Sbjct: 11 PATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVENAKKIE 67
Query: 678 VE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSA 732
VE D+ G L ++ V L+ GLAK+ + + + LL +AE A
Sbjct: 68 VEFDKGQRTDKYGRGLRYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLRKAEAQA 126
Query: 733 KSQKLKIW 740
K +KL IW
Sbjct: 127 KKEKLNIW 134
>pdb|3EVQ|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs L25e At Cryogenic Temperature
Length = 143
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 7/105 (6%)
Query: 641 IAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESR 695
+ F V P NE+Y EA + K+++ +IEVE D+ G L ++
Sbjct: 32 MTFRLLLVDTPEFNEKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADG 90
Query: 696 TNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
V L+ GLAK+ + + + LL +AE AK +KL IW
Sbjct: 91 KMVNEALVRQGLAKVAYVYKGNNTHE-QLLRKAEAQAKKEKLNIW 134
>pdb|3OWF|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs V66r At Cryogenic Temperature
Length = 143
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 9/128 (7%)
Query: 618 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 677
PA + + G K++ + + F V P NE+Y EA + K+ + +IE
Sbjct: 11 PATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMRENAKKIE 67
Query: 678 VE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSA 732
VE D+ G L ++ V L+ GLAK+ + + + LL +AE A
Sbjct: 68 VEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLRKAEAQA 126
Query: 733 KSQKLKIW 740
K +KL IW
Sbjct: 127 KKEKLNIW 134
>pdb|4HMJ|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs L36d At Cryogenic Temperature
Length = 143
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 9/134 (6%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G K++ + + F V P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGDTVKLMYKGQ--PMTFRDLLVDTPEFNEKYGPEASAFTK-KMVE 61
Query: 672 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 726
+IEVE D+ G L ++ V L+ GLAK+ + + + LL
Sbjct: 62 NAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLR 120
Query: 727 QAEKSAKSQKLKIW 740
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|3EJI|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs L36k At Cryogenic Temperature
Length = 143
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 9/134 (6%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G K++ + + F V P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGDTVKLMYKGQ--PMTFRKLLVDTPEFNEKYGPEASAFTK-KMVE 61
Query: 672 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 726
+IEVE D+ G L ++ V L+ GLAK+ + + + LL
Sbjct: 62 NAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLR 120
Query: 727 QAEKSAKSQKLKIW 740
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|3HZX|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
D+phsV 9 Determined At 100 K
Length = 143
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 9/134 (6%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G K++ + + F V P NE+Y EA + K+ +
Sbjct: 5 KKLHKEPATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMKE 61
Query: 672 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 726
+IEVE D+ G L ++ V L+ GLAK+ + + + LL
Sbjct: 62 NAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLR 120
Query: 727 QAEKSAKSQKLKIW 740
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|3C1F|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs V104k At Cryogenic Temperature
Length = 143
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 9/134 (6%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G K++ + + F V P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVE 61
Query: 672 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 726
+IEVE D+ G L ++ V L GLAK+ + + + LL
Sbjct: 62 NAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALKRQGLAKVAYVYKGNNTHE-QLLR 120
Query: 727 QAEKSAKSQKLKIW 740
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|3TP8|A Chain A, Crystal Structure Of Staphylcoccal Nulease Variant
Delta+phs L36e At Cryogenic Temperature
Length = 143
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 9/134 (6%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G K++ + + F V P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGDTVKLMYKGQ--PMTFRELLVDTPEFNEKYGPEASAFTK-KMVE 61
Query: 672 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 726
+IEVE D+ G L ++ V L+ GLAK+ + + + LL
Sbjct: 62 NAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLR 120
Query: 727 QAEKSAKSQKLKIW 740
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|3SK6|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+nviagla V23kL36E AT CRYOGENIC TEMPERATURE
Length = 143
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 9/134 (6%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G+ K++ + + F V P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGNTKKLMYKGQ--PMVFRELLVDIPEFNEKYGPEAAAFTK-KMVE 61
Query: 672 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 726
+IEVE D+ G L ++ V L+ GLAK+ + + + LL
Sbjct: 62 NAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLR 120
Query: 727 QAEKSAKSQKLKIW 740
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|3NK9|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs V74a At Cryogenic Temperature
Length = 143
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 9/134 (6%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G K++ + + F V P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVE 61
Query: 672 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 726
+IE E D+ G L ++ V L+ GLAK+ + + + LL
Sbjct: 62 NAKKIEAEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLR 120
Query: 727 QAEKSAKSQKLKIW 740
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|3H6M|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs V104e At Cryogenic Temperature
Length = 143
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 9/134 (6%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G K++ + + F V P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVE 61
Query: 672 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 726
+IEVE D+ G L ++ V L GLAK+ + + + LL
Sbjct: 62 NAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALERQGLAKVAYVYKGNNTHE-QLLR 120
Query: 727 QAEKSAKSQKLKIW 740
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|4F7X|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs I92aL25A AT CRYOGENIC TEMPERATURE
Length = 143
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 9/134 (6%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G K + + + F V P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGDTVKAMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVE 61
Query: 672 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 726
+IEVE D+ G L + V L+ GLAK+ + + + LL
Sbjct: 62 NAKKIEVEFDKGQRTDKYGRGLAYAYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLR 120
Query: 727 QAEKSAKSQKLKIW 740
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|3VA5|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs I92aV23A AT CRYOGENIC TEMPERATURE
Length = 143
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 9/134 (6%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G K++ + + F V P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGDTAKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVE 61
Query: 672 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 726
+IEVE D+ G L + V L+ GLAK+ + + + LL
Sbjct: 62 NAKKIEVEFDKGQRTDKYGRGLAYAYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLR 120
Query: 727 QAEKSAKSQKLKIW 740
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|3TP5|A Chain A, Crystal Structure Of Staphylcoccal Nulease Variant
Delta+nviagla V23eL36E AT CRYOGENIC TEMPERATURE
Length = 143
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 9/134 (6%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G+ K++ + + F V P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGNTEKLMYKGQ--PMVFRELLVDIPEFNEKYGPEAAAFTK-KMVE 61
Query: 672 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 726
+IEVE D+ G L ++ V L+ GLAK+ + + + LL
Sbjct: 62 NAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLR 120
Query: 727 QAEKSAKSQKLKIW 740
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|3MVV|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs F34a At Cryogenic Temperature
Length = 143
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 9/134 (6%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G K++ + + V P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGDTVKLMYKGQPMTARLLL--VDTPEFNEKYGPEASAFTK-KMVE 61
Query: 672 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 726
+IEVE D+ G L ++ V L+ GLAK+ + + + LL
Sbjct: 62 NAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLR 120
Query: 727 QAEKSAKSQKLKIW 740
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|1TT2|A Chain A, Cryogenic Crystal Structure Of Staphylococcal Nuclease
Variant Truncated Delta+phs I92k
Length = 138
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 9/134 (6%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G K++ + + F V P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVE 61
Query: 672 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 726
+IEVE D+ G L + V L+ GLAK+ + + + LL
Sbjct: 62 NAKKIEVEFDKGQRTDKYGRGLAYKYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLR 120
Query: 727 QAEKSAKSQKLKIW 740
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|3QB3|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs I92kl25a At Cryogenic Temperature
Length = 143
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 9/134 (6%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G K + + + F V P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGDTVKAMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVE 61
Query: 672 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 726
+IEVE D+ G L + V L+ GLAK+ + + + LL
Sbjct: 62 NAKKIEVEFDKGQRTDKYGRGLAYKYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLR 120
Query: 727 QAEKSAKSQKLKIW 740
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|3V2T|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs I92aV66A AT CRYOGENIC TEMPERATURE
Length = 143
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 9/134 (6%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G K++ + + F V P NE+Y EA + K+ +
Sbjct: 5 KKLHKEPATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMAE 61
Query: 672 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 726
+IEVE D+ G L + V L+ GLAK+ + + + LL
Sbjct: 62 NAKKIEVEFDKGQRTDKYGRGLAYAYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLR 120
Query: 727 QAEKSAKSQKLKIW 740
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|3QON|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
D+phsV23KL36E At Ph 7 Determined At 100 K
Length = 143
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Query: 648 VRCPGRNERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVIL 702
V P NE+Y EA + K+++ +IEVE D+ G L ++ V L
Sbjct: 39 VDTPEFNEKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEAL 97
Query: 703 LEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ GLAK+ + + + LL +AE AK +KL IW
Sbjct: 98 VRQGLAKVAYVYKGNNTHE-QLLRKAEAQAKKEKLNIW 134
>pdb|3NHH|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
V23e-L36k At Cryogenic Temperature
Length = 143
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Query: 648 VRCPGRNERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVIL 702
V P NE+Y EA + K+++ +IEVE D+ G L ++ V L
Sbjct: 39 VDTPEFNEKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEAL 97
Query: 703 LEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ GLAK+ + + + LL +AE AK +KL IW
Sbjct: 98 VRQGLAKVAYVYKGNNTHE-QLLRKAEAQAKKEKLNIW 134
>pdb|1TQO|A Chain A, Cryogenic Crystal Structure Of Staphylococcal Nuclease
Variant Truncated Delta+phs I92e
pdb|1TR5|A Chain A, Room Temperature Structure Of Staphylococcal Nuclease
Variant Truncated Delta+phs I92e
Length = 138
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 9/134 (6%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G K++ + + F V P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVE 61
Query: 672 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 726
+IEVE D+ G L + V L+ GLAK+ + + + LL
Sbjct: 62 NAKKIEVEFDKGQRTDKYGRGLAYEYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLR 120
Query: 727 QAEKSAKSQKLKIW 740
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|3P1H|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs V23kI92A AT CRYOGENIC TEMPERATURE
Length = 143
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 9/134 (6%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G K++ + + F V P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGDTKKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVE 61
Query: 672 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 726
+IEVE D+ G L + V L+ GLAK+ + + + LL
Sbjct: 62 NAKKIEVEFDKGQRTDKYGRGLAYAYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLR 120
Query: 727 QAEKSAKSQKLKIW 740
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|3NXW|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs L125a At Cryogenic Temperature
Length = 143
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 9/134 (6%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G K++ + + F V P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVE 61
Query: 672 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 726
+IEVE D+ G L ++ V L+ GLAK+ + + + L
Sbjct: 62 NAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLAR 120
Query: 727 QAEKSAKSQKLKIW 740
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|3MZ5|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs L103a At Cryogenic Temperature
Length = 143
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 9/134 (6%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G K++ + + F V P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVE 61
Query: 672 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 726
+IEVE D+ G L ++ V + GLAK+ + + + LL
Sbjct: 62 NAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEAAVRQGLAKVAYVYKGNNTHE-QLLR 120
Query: 727 QAEKSAKSQKLKIW 740
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|4DF7|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs V23lV99I AT CRYOGENIC TEMPERATURE
Length = 143
Score = 39.7 bits (91), Expect = 0.010, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 9/128 (7%)
Query: 618 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 677
PA + + G K++ + + F V P NE+Y EA + K+++ +IE
Sbjct: 11 PATLIKAIDGDTLKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVENAKKIE 67
Query: 678 VE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSA 732
VE D+ G L ++ + L+ GLAK+ + + + LL +AE A
Sbjct: 68 VEFDKGQRTDKYGRGLAYIYADGKMINEALVRQGLAKVAYVYKGNNTHE-QLLRKAEAQA 126
Query: 733 KSQKLKIW 740
K +KL IW
Sbjct: 127 KKEKLNIW 134
>pdb|4DFA|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs I92aL36A AT CRYOGENIC TEMPERATURE
Length = 143
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 9/134 (6%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G K++ + + F V P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGDTVKLMYKGQ--PMTFRALLVDTPEFNEKYGPEASAFTK-KMVE 61
Query: 672 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 726
+IEVE D+ G L + V L+ GLAK+ + + + LL
Sbjct: 62 NAKKIEVEFDKGQRTDKYGRGLAYAYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLR 120
Query: 727 QAEKSAKSQKLKIW 740
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|2RBM|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs I72k At Cryogenic Temperature
Length = 143
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 7/133 (5%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKI-- 669
++ + PA + + G K++ + + F V P NE+Y EA ++ +
Sbjct: 5 KKLHKEPATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTKKMVEN 62
Query: 670 -LQRDVEIEV-ETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQ 727
+++VE + + D+ G L ++ V L+ GLAK+ + + + LL +
Sbjct: 63 AKKKEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLRK 121
Query: 728 AEKSAKSQKLKIW 740
AE AK +KL IW
Sbjct: 122 AEAQAKKEKLNIW 134
>pdb|3ITP|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs F34k At Cryogenic Temperature
Length = 143
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Query: 648 VRCPGRNERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVIL 702
V P NE+Y EA + K+++ +IEVE D+ G L ++ V L
Sbjct: 39 VDTPEFNEKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEAL 97
Query: 703 LEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ GLAK+ + + + LL +AE AK +KL IW
Sbjct: 98 VRQGLAKVAYVYKGNNTHE-QLLRKAEAQAKKEKLNIW 134
>pdb|3D4W|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs A109r At Cryogenic Temperature
Length = 143
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 9/128 (7%)
Query: 618 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 677
PA + + G K++ + + F V P NE+Y EA + K+++ +IE
Sbjct: 11 PATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVENAKKIE 67
Query: 678 VE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSA 732
VE D+ G L ++ V L+ GL K+ + + + LL +AE A
Sbjct: 68 VEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLRKVAYVYKGNNTHE-QLLRKAEAQA 126
Query: 733 KSQKLKIW 740
K +KL IW
Sbjct: 127 KKEKLNIW 134
>pdb|3E5S|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs L103k At Cryogenic Temperature
pdb|3E5S|B Chain B, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs L103k At Cryogenic Temperature
Length = 143
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 9/134 (6%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G K++ + + F V P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVE 61
Query: 672 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 726
+IEVE D+ G L ++ V + GLAK+ + + + LL
Sbjct: 62 NAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEAKVRQGLAKVAYVYKGNNTHE-QLLR 120
Query: 727 QAEKSAKSQKLKIW 740
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|3C1E|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs L125k At Cryogenic Temperature
Length = 143
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 9/134 (6%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G K++ + + F V P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVE 61
Query: 672 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 726
+IEVE D+ G L ++ V L+ GLAK+ + + + L
Sbjct: 62 NAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLKR 120
Query: 727 QAEKSAKSQKLKIW 740
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 14/99 (14%)
Query: 270 DEPFALDAKYFTEMRVLN-REVRIVLEG---VDKFKNLIGSVFYPDGETAKDLAMELVEN 325
+E + +A FT+ V N +++ + + DK+ + + Y DG+ + LV
Sbjct: 45 NEKYGPEASAFTKKMVENAKKIEVEFDKGQRTDKYGRGLAYI-YADGKMVNEA---LVRQ 100
Query: 326 GLAK--YIEWSANMMEEDAKRRLKAADLQAKKTRLRMWT 362
GLAK Y+ + N E KR+ A+ QAKK +L +W+
Sbjct: 101 GLAKVAYV-YKGNNTHEQLKRK---AEAQAKKEKLNIWS 135
>pdb|4HMI|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs V99k At Cryogenic Temperature
Length = 143
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 9/134 (6%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G K++ + + F V P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVE 61
Query: 672 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 726
+IEVE D+ G L ++ L+ GLAK+ + + + LL
Sbjct: 62 NAKKIEVEFDKGQRTDKYGRGLAYIYADGKMKNEALVRQGLAKVAYVYKGNNTHE-QLLR 120
Query: 727 QAEKSAKSQKLKIW 740
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|3RUZ|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs V74k At Cryogenic Temperature
Length = 143
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 9/134 (6%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G K++ + + F V P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVE 61
Query: 672 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 726
+IE E D+ G L ++ V L+ GLAK+ + + + LL
Sbjct: 62 NAKKIEKEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLR 120
Query: 727 QAEKSAKSQKLKIW 740
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|3SK5|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs V39d At Cryogenic Temperature
Length = 143
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 9/134 (6%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G K++ + + P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGDTVKLMYKGQPMTFRLLLDD--TPEFNEKYGPEASAFTK-KMVE 61
Query: 672 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 726
+IEVE D+ G L ++ V L+ GLAK+ + + + LL
Sbjct: 62 NAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLR 120
Query: 727 QAEKSAKSQKLKIW 740
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|4EOA|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs I92nV66A AT CRYOGENIC TEMPERATURE
Length = 143
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 9/134 (6%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G K++ + + F V P NE+Y EA + K+ +
Sbjct: 5 KKLHKEPATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMAE 61
Query: 672 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 726
+IEVE D+ G L + V L+ GLAK+ + + + LL
Sbjct: 62 NAKKIEVEFDKGQRTDKYGRGLAYNYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLR 120
Query: 727 QAEKSAKSQKLKIW 740
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|3TP7|A Chain A, Crystal Structure Of Staphylcoccal Nulease Variant
Delta+phs V99e At Cryogenic Temperature
Length = 143
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 9/134 (6%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G K++ + + F V P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVE 61
Query: 672 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 726
+IEVE D+ G L ++ L+ GLAK+ + + + LL
Sbjct: 62 NAKKIEVEFDKGQRTDKYGRGLAYIYADGKMENEALVRQGLAKVAYVYKGNNTHE-QLLR 120
Query: 727 QAEKSAKSQKLKIW 740
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|4EQO|A Chain A, Crystal Structure Of Staphylococcal Nulease Variant
Delta+phs V99d At Cryogenic Temperature
Length = 143
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 9/134 (6%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G K++ + + F V P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVE 61
Query: 672 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 726
+IEVE D+ G L ++ L+ GLAK+ + + + LL
Sbjct: 62 NAKKIEVEFDKGQRTDKYGRGLAYIYADGKMDNEALVRQGLAKVAYVYKGNNTHE-QLLR 120
Query: 727 QAEKSAKSQKLKIW 740
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|4DU9|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs I92aV74A AT CRYOGENIC TEMPERATURE
Length = 143
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 9/134 (6%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G K++ + + F V P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVE 61
Query: 672 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 726
+IE E D+ G L + V L+ GLAK+ + + + LL
Sbjct: 62 NAKKIEAEFDKGQRTDKYGRGLAYAYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLR 120
Query: 727 QAEKSAKSQKLKIW 740
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|4EQP|A Chain A, Crystal Structure Of Staphylococcal Nulease Variant
Delta+phs I72d At Cryogenic Temperature
Length = 143
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 9/134 (6%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G K++ + + F V P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVE 61
Query: 672 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 726
+ EVE D+ G L ++ V L+ GLAK+ + + + LL
Sbjct: 62 NAKKDEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLR 120
Query: 727 QAEKSAKSQKLKIW 740
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|3SHL|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs V74kl25a At Cryogenic Temperature
Length = 143
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 9/134 (6%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G K + + + F V P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGDTVKAMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVE 61
Query: 672 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 726
+IE E D+ G L ++ V L+ GLAK+ + + + LL
Sbjct: 62 NAKKIEKEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLR 120
Query: 727 QAEKSAKSQKLKIW 740
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|3ERO|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs I72e At Cryogenic Temperature
Length = 143
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 9/134 (6%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G K++ + + F V P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVE 61
Query: 672 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 726
+ EVE D+ G L ++ V L+ GLAK+ + + + LL
Sbjct: 62 NAKKEEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLR 120
Query: 727 QAEKSAKSQKLKIW 740
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|4EQN|A Chain A, Crystal Structure Of Staphylococcal Nulease Variant
Delta+phs V23eI72K AT CRYOGENIC TEMPERATURE
Length = 143
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 7/133 (5%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKI-- 669
++ + PA + + G K++ + + F V P NE+Y EA ++ +
Sbjct: 5 KKLHKEPATLIKAIDGDTEKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTKKMVEN 62
Query: 670 -LQRDVEIEV-ETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQ 727
+++VE + + D+ G L ++ V L+ GLAK+ + + + LL +
Sbjct: 63 AKKKEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLLRK 121
Query: 728 AEKSAKSQKLKIW 740
AE AK +KL IW
Sbjct: 122 AEAQAKKEKLNIW 134
>pdb|4DGZ|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs I92aL125A AT CRYOGENIC TEMPERATURE
Length = 143
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 9/134 (6%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G K++ + + F V P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVE 61
Query: 672 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 726
+IEVE D+ G L + V L+ GLAK+ + + + L
Sbjct: 62 NAKKIEVEFDKGQRTDKYGRGLAYAYADGKMVNEALVRQGLAKVAYVYKGNNTHE-QLAR 120
Query: 727 QAEKSAKSQKLKIW 740
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|3SXH|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs I92al103a At Cryogenic Temperature
Length = 143
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 9/134 (6%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G K++ + + F V P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVE 61
Query: 672 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 726
+IEVE D+ G L + V + GLAK+ + + + LL
Sbjct: 62 NAKKIEVEFDKGQRTDKYGRGLAYAYADGKMVNEAAVRQGLAKVAYVYKGNNTHE-QLLR 120
Query: 727 QAEKSAKSQKLKIW 740
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|3P75|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs V104d At Cryogenic Temperature
Length = 129
Score = 38.1 bits (87), Expect = 0.025, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 9/128 (7%)
Query: 618 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIE 677
PA + + G K++ + + F V P NE+Y EA + K+++ +IE
Sbjct: 5 PATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTK-KMVENAKKIE 61
Query: 678 VE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSA 732
VE D+ G L ++ V L GLAK+ + + + LL +AE A
Sbjct: 62 VEFDKGQRTDKYGRGLAYIYADGKMVNEALDRQGLAKVAYVYKGNNTHE-QLLRKAEAQA 120
Query: 733 KSQKLKIW 740
K +KL IW
Sbjct: 121 KKEKLNIW 128
>pdb|3NTH|A Chain A, Crystal Structure Of Tudor And Aubergine [r13(Me2s)]
Complex
pdb|3NTI|A Chain A, Crystal Structure Of Tudor And Aubergine [r15(Me2s)]
Complex
Length = 172
Score = 37.7 bits (86), Expect = 0.029, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 10/124 (8%)
Query: 759 QKEVLKVVVTEILGGGKFYVQQVGDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQ 818
+ E+ VV + G FYVQ D V +++Q L E + + K+G + +AQ
Sbjct: 2 EAELHNCVVVQFDGPMSFYVQMESD--VPALEQMTDKLLDAEQDLPAFSDLKEGALCVAQ 59
Query: 819 FSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQ 878
F D + RA I R+ ++ + K EV +ID+GN + + R + L+ ++
Sbjct: 60 FPEDEVFYRAQI----RKVLD--DGKCEVHFIDFGNNAVT--QQFRQLPEELAKPARYSR 111
Query: 879 LCSL 882
C L
Sbjct: 112 HCEL 115
>pdb|2DIQ|A Chain A, Solution Structure Of The Tudor Domain Of Tudor And Kh
Domain Containing Protein
Length = 110
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 812 GEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLS 871
G+IV A + SW RA ++ N +++++D+G+ P LR +
Sbjct: 36 GDIVAAPLPTNGSWYRARVLGTLE------NGNLDLYFVDFGDNGDCPLKDLRALRSDFL 89
Query: 872 STPPLAQLCSLAYI 885
S P A CSLA I
Sbjct: 90 SLPFQAIECSLARI 103
>pdb|3NTK|A Chain A, Crystal Structure Of Tudor
pdb|3NTK|B Chain B, Crystal Structure Of Tudor
Length = 169
Score = 37.7 bits (86), Expect = 0.036, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 10/122 (8%)
Query: 761 EVLKVVVTEILGGGKFYVQQVGDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFS 820
E+ VV + G FYVQ D V +++Q L E + + K+G + +AQF
Sbjct: 2 ELHNCVVVQFDGPMSFYVQMESD--VPALEQMTDKLLDAEQDLPAFSDLKEGALCVAQFP 59
Query: 821 ADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLC 880
D + RA I R+ ++ + K EV +ID+GN + + R + L+ ++ C
Sbjct: 60 EDEVFYRAQI----RKVLD--DGKCEVHFIDFGNNAVT--QQFRQLPEELAKPARYSRHC 111
Query: 881 SL 882
L
Sbjct: 112 EL 113
>pdb|3TP6|A Chain A, Crystal Structure Of Staphylcoccal Nulease Variant
Delta+phs L36eL103K AT CRYOGENIC TEMPERATURE
Length = 143
Score = 37.7 bits (86), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 9/134 (6%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G K++ + + F V P NE+Y EA + K+++
Sbjct: 5 KKLHKEPATLIKAIDGDTVKLMYKGQ--PMTFRELLVDTPEFNEKYGPEASAFTK-KMVE 61
Query: 672 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 726
+IEVE D+ G L ++ V + GLAK+ + + + LL
Sbjct: 62 NAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEAKVRQGLAKVAYVYKGNNTHE-QLLR 120
Query: 727 QAEKSAKSQKLKIW 740
+AE AK +KL IW
Sbjct: 121 KAEAQAKKEKLNIW 134
>pdb|1KAB|A Chain A, Stress And Strain In Staphylococcal Nuclease
Length = 136
Score = 37.7 bits (86), Expect = 0.037, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 47 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 105
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ +G + + H L ++E AK +KL IW
Sbjct: 106 VAYVYGPNNTHEQH-LRKSEAQAKKEKLNIW 135
>pdb|1STY|A Chain A, The Alpha Aneurism: A Structural Motif Revealed In An
Insertion Mutant Of Staphylococcal Nuclease
Length = 150
Score = 37.4 bits (85), Expect = 0.043, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHLRGKSEAQAKKEKLNIW 141
>pdb|3U9O|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
NviagaN100G AT Cryogenic Temperature
Length = 149
Score = 37.0 bits (84), Expect = 0.064, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEAAAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVGEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + HL +AE AK +KL IW
Sbjct: 111 VAYVYKGNNTHEQHL-RKAEAQAKKEKLNIW 140
>pdb|3T16|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
NviagaM98G AT Cryogenic Temperature
Length = 149
Score = 36.6 bits (83), Expect = 0.064, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEAAAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKGVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + HL +AE AK +KL IW
Sbjct: 111 VAYVYKGNNTHEQHL-RKAEAQAKKEKLNIW 140
>pdb|2F0Q|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant
V66lI92L
Length = 149
Score = 36.6 bits (83), Expect = 0.078, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+L+ +IEVE D+ G L L+ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMLENAKKIEVEFDKGQRTDKYGRGLAYLYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + H L ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQH-LRKSEAQAKKEKLNIW 140
>pdb|2EYP|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant T120v
Length = 149
Score = 36.6 bits (83), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + + H L ++E AK +KL IW
Sbjct: 111 VAYVYKPNNVHEQH-LRKSEAQAKKEKLNIW 140
>pdb|2OEO|A Chain A, Cryogenic Crystal Structure Of Staphylococcal Nuclease
Variant Truncated Delta+phs I92d
Length = 138
Score = 36.2 bits (82), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 7/133 (5%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G K++ + + F V P NE+Y EA + +
Sbjct: 5 KKLHKEPATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTKAMVEN 62
Query: 672 -RDVEIEVETVDRTGTFLGSLWESRTNVAVI---LLEAGLAKLQTSFGSDRIPDSHLLEQ 727
+ +E+E + RT + L + A++ L+ GLA + + + + LL
Sbjct: 63 AKKIEVEFDKGQRTDKYGRGLAYDYADGAMVNEALVRQGLAAVAYVYSGNNTHE-QLLRA 121
Query: 728 AEKSAKSQKLKIW 740
AE AK +KL IW
Sbjct: 122 AEAQAKKEKLNIW 134
>pdb|1F2Y|A Chain A, Simplification Of A Protein Loop In Staphylococcal
Nuclease
Length = 149
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + H L ++E AK +KL IW
Sbjct: 111 VAAVYAPNNTHEQH-LRKSEAQAKKEKLNIW 140
>pdb|1F2M|A Chain A, Simplification Of A Protein Loop In Staphylococcal
Nuclease
Length = 149
Score = 35.8 bits (81), Expect = 0.11, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ ++ + + H L ++E AK +KL IW
Sbjct: 111 VAYAYAPNNTHEQH-LRKSEAQAKKEKLNIW 140
>pdb|2EYF|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant T44v
Length = 149
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 8/99 (8%)
Query: 648 VRCPGRN-ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVI 701
V+ P + E+Y EA + K+++ +IEVE D+ G L ++ V
Sbjct: 44 VKHPKKGVEKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEA 102
Query: 702 LLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
L+ GLAK+ + + + HL ++E AK +KL IW
Sbjct: 103 LVRQGLAKVAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|1EZ6|A Chain A, Structure Of S. Nuclease Stabilizing Sextuple Mutant
T33vT41IS59AP117GH124LS128A
Length = 149
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEAAAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + LL +AE AK +KL IW
Sbjct: 111 VAYVYKGNNTHE-QLLRKAEAQAKKEKLNIW 140
>pdb|2EYJ|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant T62v
Length = 149
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA ++ K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFVK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|2F0H|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant V66l
Length = 149
Score = 35.4 bits (80), Expect = 0.15, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+L+ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMLENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|2OF1|A Chain A, Cryogenic Crystal Structure Of The Staphylococcal Nuclease
Variant Truncated Delta+phs I92w
Length = 138
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 7/133 (5%)
Query: 612 QRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 671
++ + PA + + G K++ + + F V P NE+Y EA + +
Sbjct: 5 KKLHKEPATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDTPEFNEKYGPEASAFTKAMVEN 62
Query: 672 -RDVEIEVET---VDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQ 727
+ +E+E + D+ G L + V L+ GLA + + + + LL
Sbjct: 63 AKKIEVEFDKGQRTDKYGRGLAYWYADGAMVNEALVRQGLAAVAYVYKGNNTHE-QLLRA 121
Query: 728 AEKSAKSQKLKIW 740
AE AK +KL IW
Sbjct: 122 AEAQAKKEKLNIW 134
>pdb|1EY7|A Chain A, Structure Of S. Nuclease Stabilizing Mutant S128a
Length = 149
Score = 35.4 bits (80), Expect = 0.17, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + HL +AE AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKAEAQAKKEKLNIW 140
>pdb|3D6C|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant Phs
L38e At Cryogenic Temperature
Length = 149
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + LL +AE AK +KL IW
Sbjct: 111 VAYVYKGNNTHE-QLLRKAEAQAKKEKLNIW 140
>pdb|2EY5|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant T41s
Length = 149
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|1KAA|A Chain A, Stress And Strain In Staphylococcal Nuclease
Length = 136
Score = 35.4 bits (80), Expect = 0.18, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 47 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 105
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + H L ++E AK +KL IW
Sbjct: 106 VAYVYAPNNTHEQH-LRKSEAQAKKEKLNIW 135
>pdb|1SYE|A Chain A, Engineering Alternative Beta-Turn Types In Staphylococcal
Nuclease
pdb|1SYF|A Chain A, Engineering Alternative Beta-Turn Types In Staphylococcal
Nuclease
Length = 149
Score = 35.4 bits (80), Expect = 0.19, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + ++ + H L ++E AK +KL IW
Sbjct: 111 VAYVYKTNNTHEQH-LRKSEAQAKKEKLNIW 140
>pdb|2F0S|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant
V66lI92V
Length = 149
Score = 35.0 bits (79), Expect = 0.19, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+L+ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMLENAKKIEVEFDKGQRTDKYGRGLAYVYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|2EY1|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant T22v
Length = 149
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|2EY6|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant T41v
Length = 149
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|1EY5|A Chain A, Structure Of S. Nuclease Stabilizing Mutant T33v
pdb|1EZ8|A Chain A, Structure Of S. Nuclease Stabilizing Mutant T33v
Length = 149
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|1EYA|A Chain A, Structure Of S. Nuclease Stabilizing Quintuple Mutant
T33vT41IP117GH124LS128A
Length = 149
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + LL +AE AK +KL IW
Sbjct: 111 VAYVYKGNNTHE-QLLRKAEAQAKKEKLNIW 140
>pdb|2F0T|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant
V66lV99I
Length = 149
Score = 35.0 bits (79), Expect = 0.21, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+L+ +IEVE D+ G L ++ + L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMLENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMINEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|1SYB|A Chain A, Transfer Of A Beta-Turn Structure To A New Protein Context
Length = 150
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 53 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 111
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + HL ++E AK +KL IW
Sbjct: 112 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 141
>pdb|3DMU|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant Phs
T62k At Cryogenic Temperature
Length = 149
Score = 35.0 bits (79), Expect = 0.21, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA ++K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAF-KKKMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + LL +AE AK +KL IW
Sbjct: 111 VAYVYKGNNTHE-QLLRKAEAQAKKEKLNIW 140
>pdb|1SYG|A Chain A, Engineering Alternative Beta-Turn Types In Staphylococcal
Nuclease
Length = 149
Score = 35.0 bits (79), Expect = 0.21, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + ++ + H L ++E AK +KL IW
Sbjct: 111 VAYVYKANNTHEQH-LRKSEAQAKKEKLNIW 140
>pdb|4EVO|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
NviagaE122G AT Cryogenic Temperature
Length = 149
Score = 35.0 bits (79), Expect = 0.22, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEAAAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + HL +AE AK +KL IW
Sbjct: 111 VAYVYKGNNTHGQHL-RKAEAQAKKEKLNIW 140
>pdb|2EY2|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant T41c
Length = 149
Score = 35.0 bits (79), Expect = 0.23, Method: Composition-based stats.
Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 15/134 (11%)
Query: 618 PAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRN------ERYSNEALLLMRQKILQ 671
PA + + G K++ + + F V CP E+Y EA + K+++
Sbjct: 11 PATLIKAIDGDTVKLMYKGQ--PMTFRLLLVDCPETKHPKKGVEKYGPEASAFTK-KMVE 67
Query: 672 RDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLE 726
+IEVE D+ G L ++ V L+ GLAK+ + + + HL
Sbjct: 68 NAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKPNNTHEQHL-R 126
Query: 727 QAEKSAKSQKLKIW 740
++E AK +KL IW
Sbjct: 127 KSEAQAKKEKLNIW 140
>pdb|2QDB|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
E75qD21NT33VT41IS59AP117GS128A AT 100 K
Length = 149
Score = 35.0 bits (79), Expect = 0.24, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEV+ D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEAAAFTK-KMVENAKKIEVQFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + HL +AE AK +KL IW
Sbjct: 111 VAYVYKGNNTHEQHL-RKAEAQAKKEKLNIW 140
>pdb|2RDF|A Chain A, Crystal Structure Of Staphyloccocal Nuclease ViaganE75A
Variant At Cryogenic Temperature
Length = 149
Score = 35.0 bits (79), Expect = 0.24, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEV-----ETVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEV + D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEAAAFTK-KMVENAKKIEVAFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + HL +AE AK +KL IW
Sbjct: 111 VAYVYKGNNTHEQHL-RKAEAQAKKEKLNIW 140
Score = 29.6 bits (65), Expect = 8.3, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 14/98 (14%)
Query: 271 EPFALDAKYFTEMRVLN-REVRIVLEG---VDKFKNLIGSVFYPDGETAKDLAMELVENG 326
E + +A FT+ V N +++ + + DK+ + + Y DG+ + LV G
Sbjct: 52 EKYGPEAAAFTKKMVENAKKIEVAFDKGQRTDKYGRGLAYI-YADGKMVNE---ALVRQG 107
Query: 327 LAK--YIEWSANMMEEDAKRRLKAADLQAKKTRLRMWT 362
LAK Y+ N E+ L+ A+ QAKK +L +W+
Sbjct: 108 LAKVAYVYKGNNTHEQ----HLRKAEAQAKKEKLNIWS 141
>pdb|2EYH|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant T62s
Length = 149
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFSK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|1EYC|A Chain A, Structure Of S. Nuclease Stabilizing Quintuple Mutant
T41iS59AP117GH124LS128A
Length = 149
Score = 34.7 bits (78), Expect = 0.26, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEAAAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + LL +AE AK +KL IW
Sbjct: 111 VAYVYKGNNTHE-QLLRKAEAQAKKEKLNIW 140
>pdb|1KDC|A Chain A, Stabilization Of A Strained Protein Loop Conformation
Through Protein Engineering
Length = 149
Score = 34.7 bits (78), Expect = 0.26, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + H L ++E AK +KL IW
Sbjct: 111 VAYVYNPNNTHEQH-LRKSEAQAKKEKLNIW 140
>pdb|2F0G|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant V66i
Length = 149
Score = 34.7 bits (78), Expect = 0.28, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMIENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|4G57|A Chain A, Staphylococcal Nuclease Double Mutant I72l, I92l
Length = 135
Score = 34.7 bits (78), Expect = 0.29, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ ++EVE D+ G L L+ V L+ GLAK
Sbjct: 46 EKYGPEASAFTK-KMVENAKKLEVEFDKGQRTDKYGRGLAYLYADGKMVNEALVRQGLAK 104
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + H L ++E AK +KL IW
Sbjct: 105 VAYVYKPNNTHEQH-LRKSEAQAKKEKLNIW 134
>pdb|1EY4|A Chain A, Structure Of S. Nuclease Stabilizing Mutant S59a
Length = 149
Score = 34.7 bits (78), Expect = 0.29, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEAAAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|2F0V|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant
V23lV66LI72L
Length = 149
Score = 34.7 bits (78), Expect = 0.29, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+L+ ++EVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMLENAKKLEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|2F0W|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant
V23iL25IV66LI72L
Length = 149
Score = 34.7 bits (78), Expect = 0.29, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+L+ ++EVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMLENAKKLEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|1SYC|A Chain A, Engineering Alternative Beta-Turn Types In Staphylococcal
Nuclease
pdb|1SYD|A Chain A, Engineering Alternative Beta-Turn Types In Staphylococcal
Nuclease
Length = 149
Score = 34.7 bits (78), Expect = 0.30, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKGNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|2EYL|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant T82s
Length = 149
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRSDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|2EYO|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant T120s
Length = 149
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNSHEQHL-RKSEAQAKKEKLNIW 140
>pdb|1EY9|A Chain A, Structure Of S. Nuclease Stabilizing Quadruple Mutant
T41iP117GH124LS128A
Length = 149
Score = 34.3 bits (77), Expect = 0.33, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + LL +AE AK +KL IW
Sbjct: 111 VAYVYKGNNTHE-QLLRKAEAQAKKEKLNIW 140
>pdb|1KDA|A Chain A, Stabilization Of A Strained Protein Loop Conformation
Through Protein Engineering
Length = 149
Score = 34.3 bits (77), Expect = 0.33, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYDPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|2EXZ|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant T22c
Length = 149
Score = 34.3 bits (77), Expect = 0.34, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|1STA|A Chain A, Accommodation Of Insertion Mutations On The Surface And In
The Interior Of Staphylococcal Nuclease
Length = 151
Score = 34.3 bits (77), Expect = 0.34, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 54 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 112
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + HL ++E AK +KL IW
Sbjct: 113 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 142
>pdb|1SNM|A Chain A, Active Site Mutant Glu-43 (Right Arrow) Asp In
Staphylococcal Nuclease Displays Nonlocal Structural
Changes
Length = 149
Score = 34.3 bits (77), Expect = 0.34, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|1STB|A Chain A, Accommodation Of Insertion Mutations On The Surface And In
The Interior Of Staphylococcal Nuclease
Length = 150
Score = 34.3 bits (77), Expect = 0.34, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 53 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 111
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + HL ++E AK +KL IW
Sbjct: 112 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 141
>pdb|1NUC|A Chain A, Staphylococcal Nuclease, V23c Variant
Length = 149
Score = 34.3 bits (77), Expect = 0.34, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|1EY6|A Chain A, Structure Of S. Nuclease Stabilizing Mutant T41i
Length = 149
Score = 34.3 bits (77), Expect = 0.34, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|1ENA|A Chain A, Crystal Structures Of The Binary Ca2+ And Pdtp Complexes
And The Ternary Complex Of The Asp 21->glu Mutant Of
Staphylococcal Nuclease. Implications For Catalysis And
Ligand Binding
pdb|2ENB|A Chain A, Crystal Structures Of The Binary Ca2+ And Pdtp Complexes
And The Ternary Complex Of The Asp 21->glu Mutant Of
Staphylococcal Nuclease. Implications For Catalysis And
Ligand Binding
Length = 135
Score = 34.3 bits (77), Expect = 0.34, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 46 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 104
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + HL ++E AK +KL IW
Sbjct: 105 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 134
>pdb|2F0E|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant V23l
Length = 149
Score = 34.3 bits (77), Expect = 0.34, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|1IHZ|A Chain A, Structure Of S. Nuclease Mutant Quintuple Mutant
V23lV66LI72LI92LV99L
Length = 149
Score = 34.3 bits (77), Expect = 0.35, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+L+ ++EVE D+ G L L+ + L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMLENAKKLEVEFDKGQRTDKYGRGLAYLYADGKMLNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|1II3|A Chain A, Structure Of S. Nuclease Quintuple Mutant
V23iV66LI72LI92LV99L
Length = 149
Score = 34.3 bits (77), Expect = 0.35, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+L+ ++EVE D+ G L L+ + L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMLENAKKLEVEFDKGQRTDKYGRGLAYLYADGKMLNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|2F0K|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant
V23iL25I
Length = 149
Score = 34.3 bits (77), Expect = 0.35, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|1EY8|A Chain A, Structure Of S. Nuclease Stabilizing Triple Mutant
P117gH124LS128A
pdb|2LKV|A Chain A, Staphylococcal Nuclease Phs Variant
Length = 149
Score = 34.3 bits (77), Expect = 0.36, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + LL +AE AK +KL IW
Sbjct: 111 VAYVYKGNNTHE-QLLRKAEAQAKKEKLNIW 140
>pdb|1NSN|S Chain S, The Crystal Structure Of Antibody N10-Staphylococcal
Nuclease Complex At 2.9 Angstroms Resolution
Length = 149
Score = 34.3 bits (77), Expect = 0.36, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|2F0F|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant L25i
Length = 149
Score = 34.3 bits (77), Expect = 0.36, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|1EY0|A Chain A, Structure Of Wild-Type S. Nuclease At 1.6 A Resolution
pdb|1EYD|A Chain A, Structure Of Wild-Type S. Nuclease At 1.7 A Resolution
pdb|1SNC|A Chain A, The Crystal Structure Of The Ternary Complex Of
Staphylococcal Nuclease, Ca2+, And The Inhibitor PdTp,
Refined At 1.65 Angstroms
pdb|1STG|A Chain A, Two Distinctly Different Metal Binding Modes Are Seen In
X- Ray Crystal Structures Of Staphylococcal Nuclease-
Cobalt(Ii)-Nucleotide Complexes
pdb|1STH|A Chain A, Two Distinctly Different Metal Binding Modes Are Seen In
X- Ray Crystal Structures Of Staphylococcal Nuclease-
Cobalt(Ii)-Nucleotide Complexes
pdb|1STN|A Chain A, The Crystal Structure Of Staphylococcal Nuclease Refined
At 1.7 Angstroms Resolution
Length = 149
Score = 34.3 bits (77), Expect = 0.36, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|2F0O|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant
V66iI72V
Length = 149
Score = 34.3 bits (77), Expect = 0.37, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 655 ERYSNEALLLMRQKILQ-RDVEIEVETVDRT---GTFLGSLWESRTNVAVILLEAGLAKL 710
E+Y EA ++ I + VE+E + RT G L ++ V L+ GLAK+
Sbjct: 52 EKYGPEASAFTKKMIENAKKVEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKV 111
Query: 711 QTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + HL ++E AK +KL IW
Sbjct: 112 AYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|1A2T|A Chain A, Staphylococcal Nuclease, B-Mercaptoethanol Disulfide To
V23c Variant
pdb|1A2U|A Chain A, Staphylococcal Nuclease, V23c Variant, Complex With 1-N-
Butane Thiol And 3',5'-Thymidine Diphosphate
pdb|1A3T|A Chain A, Staphylococcal Nuclease, V23c Variant, Complex With 2-
Fluoroethane Thiol And 3',5'-Thymidine Diphosphate
pdb|1A3U|A Chain A, Staphylococcal Nuclease, Cyclohexane Thiol Disulfide To
V23c Variant
pdb|1A3V|A Chain A, Staphylococcal Nuclease, Cyclopentane Thiol Disulfide To
V23c Variant
pdb|1AEX|A Chain A, Staphylococcal Nuclease, Methane Thiol Disulfide To V23c
Variant
pdb|2NUC|A Chain A, Staphlococcal Nuclease, Ethane Thiol Disulfide To V23c
Variant
pdb|3NUC|A Chain A, Staphlococcal Nuclease, 1-N-Propane Thiol Disulfide To
V23c Variant
pdb|5NUC|A Chain A, Staphylococcal Nuclease, 1-N-Pentane Thiol Disulfide To
V23c Variant
Length = 149
Score = 34.3 bits (77), Expect = 0.37, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|2SNS|A Chain A, Staphylococcal Nuclease. Proposed Mechanism Of Action
Based On Structure Of Enzyme-Thymidine
3(Prime),5(Prime)-Biphosphate-Calcium Ion Complex At
1.5-Angstroms Resolution
Length = 149
Score = 34.3 bits (77), Expect = 0.38, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFNKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|2RKS|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant Phs
L38k At Cryogenic Temperature
Length = 149
Score = 34.3 bits (77), Expect = 0.38, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + LL +AE AK +KL IW
Sbjct: 111 VAYVYKGNNTHE-QLLRKAEAQAKKEKLNIW 140
>pdb|2EYM|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant T120c
Length = 149
Score = 34.3 bits (77), Expect = 0.39, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNCHEQHL-RKSEAQAKKEKLNIW 140
>pdb|2F0P|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant
V66iV99I
Length = 149
Score = 34.3 bits (77), Expect = 0.39, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ + L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMIENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMINEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|3FDR|A Chain A, Crystal Structure Of Tdrd2
Length = 94
Score = 34.3 bits (77), Expect = 0.40, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 812 GEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLS 871
G+IV A + SW RA ++ N +++++D+G+ P LR +
Sbjct: 31 GDIVAAPLPTNGSWYRARVLGTLE------NGNLDLYFVDFGDNGDCPLKDLRALRSDFL 84
Query: 872 STPPLAQLCS 881
S P A CS
Sbjct: 85 SLPFQAIECS 94
>pdb|1ENC|A Chain A, Crystal Structures Of The Binary Ca2+ And Pdtp Complexes
And The Ternary Complex Of The Asp 21->glu Mutant Of
Staphylococcal Nuclease. Implications For Catalysis And
Ligand Binding
Length = 149
Score = 34.3 bits (77), Expect = 0.40, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|1KDB|A Chain A, Stabilization Of A Strained Protein Loop Conformation
Through Protein Engineering
Length = 149
Score = 33.9 bits (76), Expect = 0.45, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYEPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|2F0D|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant I92v
Length = 149
Score = 33.9 bits (76), Expect = 0.45, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYVYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|2PW5|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
V66yP117GH124LS128A AT ROOM TEMPERATURE
pdb|2PW7|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
V66yP117GH124LS128A AT 100K
Length = 149
Score = 33.9 bits (76), Expect = 0.54, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+ + +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMYENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + LL +AE AK +KL IW
Sbjct: 111 VAYVYKGNNTHE-QLLRKAEAQAKKEKLNIW 140
>pdb|2F0U|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant
V23iL25II72V
Length = 149
Score = 33.9 bits (76), Expect = 0.54, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ ++EVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKVEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|2F0M|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant
V23lI72V
Length = 149
Score = 33.9 bits (76), Expect = 0.54, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ ++EVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKVEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|2F0J|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant I72v
Length = 149
Score = 33.5 bits (75), Expect = 0.55, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ ++EVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKVEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|1EQV|A Chain A, Simplification Of A Protein Loop In Staphylococcal
Nuclease
Length = 136
Score = 33.5 bits (75), Expect = 0.56, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 47 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 105
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + H L ++E AK +KL IW
Sbjct: 106 VAAAAAPNNTHEQH-LRKSEAQAKKEKLNIW 135
>pdb|2PQE|A Chain A, Solution Structure Of Proline-Free Mutant Of
Staphylococcal Nuclease
Length = 149
Score = 33.5 bits (75), Expect = 0.61, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGAEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + LL ++E AK +KL IW
Sbjct: 111 VAYVYKGNNTHE-QLLRKSEAQAKKEKLNIW 140
>pdb|1JOK|A Chain A, Averaged Structure For Staphylococcal Nuclease-H124l In
Ternary Complex With Ca2+ And
Thymidine-3',5'-Bisphosphate
pdb|1JOO|A Chain A, Averaged Structure For Unligated Staphylococcal Nuclease-
H124l
pdb|1JOQ|A Chain A, Ensemble Structures For Staphylococcal Nuclease-H124l In
Ternary Complex With Ca2+ And
Thymidine-3',5'-Bisphosphate
pdb|1JOR|A Chain A, Ensemble Structures For Unligated Staphylococcal Nuclease-
H124l
pdb|1SNO|A Chain A, Protein Stability In Staphylococcal Nuclease
Length = 149
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + LL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHE-QLLRKSEAQAKKEKLNIW 140
>pdb|1F2Z|A Chain A, Simplification Of A Protein Loop In Staphylococcal
Nuclease
Length = 149
Score = 33.5 bits (75), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + HL ++E AK +KL IW
Sbjct: 111 VAYVAAPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|2F0L|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant
V23lI72L
Length = 149
Score = 33.5 bits (75), Expect = 0.68, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ ++EVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKLEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|4E6I|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Nviaga V99g At Cryogenic Temperature
pdb|4E6I|B Chain B, Crystal Structure Of Staphylococcal Nuclease Variant
Nviaga V99g At Cryogenic Temperature
Length = 149
Score = 33.5 bits (75), Expect = 0.69, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ L+ GLAK
Sbjct: 52 EKYGPEAAAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMGNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + HL +AE AK +KL IW
Sbjct: 111 VAYVYKGNNTHEQHL-RKAEAQAKKEKLNIW 140
>pdb|1SNQ|A Chain A, Protein Stability In Staphylococcal Nuclease
Length = 149
Score = 33.5 bits (75), Expect = 0.70, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + LL ++E AK +KL IW
Sbjct: 111 VAYVYKGNNTHE-QLLRKSEAQAKKEKLNIW 140
>pdb|2F0N|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant
L25iI72L
Length = 149
Score = 33.1 bits (74), Expect = 0.72, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ ++EVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKLEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|2F0I|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant I72l
Length = 149
Score = 33.1 bits (74), Expect = 0.72, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ ++EVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKLEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|1SNP|A Chain A, Protein Stability In Staphylococcal Nuclease
Length = 149
Score = 33.1 bits (74), Expect = 0.73, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + LL ++E AK +KL IW
Sbjct: 111 VAYVYKGNNTHE-QLLRKSEAQAKKEKLNIW 140
>pdb|2KQ3|A Chain A, Solution Structure Of Snase140
Length = 140
Score = 33.1 bits (74), Expect = 0.79, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + LL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHE-QLLRKSEAQAKKEKLNIW 140
>pdb|2PYK|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
V66qP117GH124LS128A AT ROOM TEMPERATURE
pdb|2PZT|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
V66qP117GH124LS128A AT 100 K
Length = 149
Score = 33.1 bits (74), Expect = 0.80, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+ + +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMQENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + LL +AE AK +KL IW
Sbjct: 111 VAYVYKGNNTHE-QLLRKAEAQAKKEKLNIW 140
>pdb|2SNM|A Chain A, In A Staphylococcal Nuclease Mutant The Side-Chain Of A
Lysine Replacing Valine 66 Is Fully Buried In The
Hydrophobic Core
Length = 149
Score = 33.1 bits (74), Expect = 0.89, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+ + +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMKENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|1U9R|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant
V66eP117GH124LS128A AT ROOM TEMPERATURE
Length = 149
Score = 32.7 bits (73), Expect = 1.0, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+ + +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMEENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + LL +AE AK +KL IW
Sbjct: 111 VAYVYKGNNTHE-QLLRKAEAQAKKEKLNIW 140
>pdb|2PZU|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
V66nP117GH124LS128A AT CRYOGENIC TEMPERATURE
pdb|2PZW|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
V66nP117GH124LS128A AT ROOM TEMPERATURE
Length = 149
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+ + +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMNENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + LL +AE AK +KL IW
Sbjct: 111 VAYVYKGNNTHE-QLLRKAEAQAKKEKLNIW 140
>pdb|2OXP|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant
V66dP117GH124LS128A
Length = 149
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+ + +IEVE D+ G L ++ V L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMDENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + LL +AE AK +KL IW
Sbjct: 111 VAYVYKGNNTHE-QLLRKAEAQAKKEKLNIW 140
>pdb|4H7B|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant
I72vV99L
Length = 149
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 655 ERYSNEALLLMRQKILQRDVEIEVE-----TVDRTGTFLGSLWESRTNVAVILLEAGLAK 709
E+Y EA + K+++ ++EVE D+ G L ++ + L+ GLAK
Sbjct: 52 EKYGPEASAFTK-KMVENAKKVEVEFDKGQRTDKYGRGLAYIYADGKMLNEALVRQGLAK 110
Query: 710 LQTSFGSDRIPDSHLLEQAEKSAKSQKLKIW 740
+ + + + HL ++E AK +KL IW
Sbjct: 111 VAYVYKPNNTHEQHL-RKSEAQAKKEKLNIW 140
>pdb|3FME|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein
Kinase Kinase 6 (Mek6) Activated Mutant (S207d, T211d)
Length = 290
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 98/234 (41%), Gaps = 40/234 (17%)
Query: 667 QKILQRDVEIEVETVDR--TGTFLGSLW-ESRTNVAVILLEAGLAKL--QTSFGSDRIPD 721
QK L D++I + TVD T TF G+L+ E + + L++ L K Q IP+
Sbjct: 49 QKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICMELMDTSLDKFYKQVIDKGQTIPE 108
Query: 722 SHLLEQAEKSAKS-----QKLKIWENYVEGEEVSNGAAVEGKQKE------VLKVVVTEI 770
L + A K+ KL + V+ V A + K + ++ V +I
Sbjct: 109 DILGKIAVSIVKALEHLHSKLSVIHRDVKPSNVLINALGQVKMCDFGISGYLVDDVAKDI 168
Query: 771 LGGGKFYV--QQVG---DQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSW 825
G K Y+ +++ +QK SV+ + SL + E+ + +F D SW
Sbjct: 169 DAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMI-----------ELAILRFPYD-SW 216
Query: 826 NRAM-----IVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTP 874
+V P ++ + DKF ++D+ +Q L +K RP P L P
Sbjct: 217 GTPFQQLKQVVEEPSPQLPA--DKFSAEFVDFTSQCLKKNSKERPTYPELMQHP 268
>pdb|3VN9|A Chain A, Rifined Crystal Structure Of Non-Phosphorylated Map2k6 In
A Putative Auto-Inhibition State
Length = 340
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 94/234 (40%), Gaps = 40/234 (17%)
Query: 667 QKILQRDVEIEVETVDR--TGTFLGSLW-ESRTNVAVILLEAGLAKL--QTSFGSDRIPD 721
QK L D++I + TVD T TF G+L+ E + + L++ L K Q IP+
Sbjct: 93 QKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICMELMDTSLDKFYKQVIDKGQTIPE 152
Query: 722 SHLLEQAEKSAKS-----QKLKIWENYVEGEEVSNGAAVEGKQKE------VLKVVVTEI 770
L + A K+ KL + V+ V A + K + ++ V I
Sbjct: 153 DILGKIAVSIVKALEHLHSKLSVIHRDVKPSNVLINALGQVKMCDFGISGYLVDSVAKTI 212
Query: 771 LGGGKFY-----VQQVGDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSW 825
G K Y + +QK SV+ + SL + E+ + +F D SW
Sbjct: 213 DAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMI-----------ELAILRFPYD-SW 260
Query: 826 NRAM-----IVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTP 874
+V P ++ + DKF ++D+ +Q L +K RP P L P
Sbjct: 261 GTPFQQLKQVVEEPSPQLPA--DKFSAEFVDFTSQCLKKNSKERPTYPELMQHP 312
>pdb|3NBU|A Chain A, Crystal Structure Of Pgi Glucosephosphate Isomerase
pdb|3NBU|B Chain B, Crystal Structure Of Pgi Glucosephosphate Isomerase
pdb|3NBU|C Chain C, Crystal Structure Of Pgi Glucosephosphate Isomerase
pdb|3NBU|D Chain D, Crystal Structure Of Pgi Glucosephosphate Isomerase
pdb|3NBU|E Chain E, Crystal Structure Of Pgi Glucosephosphate Isomerase
pdb|3NBU|F Chain F, Crystal Structure Of Pgi Glucosephosphate Isomerase
Length = 549
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 843 DKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLA 883
D+F F + +Q LV Y+K R + +L+ LA+ C LA
Sbjct: 36 DRFSKFSATFDDQMLVDYSKNRITEETLAKLQDLAKECDLA 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,663,582
Number of Sequences: 62578
Number of extensions: 1032849
Number of successful extensions: 3095
Number of sequences better than 100.0: 182
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 172
Number of HSP's that attempted gapping in prelim test: 2700
Number of HSP's gapped (non-prelim): 508
length of query: 1019
length of database: 14,973,337
effective HSP length: 108
effective length of query: 911
effective length of database: 8,214,913
effective search space: 7483785743
effective search space used: 7483785743
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)