Query 001739
Match_columns 1019
No_of_seqs 522 out of 2891
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 08:10:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001739.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001739hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2039 Transcriptional coacti 100.0 4.7E-89 1E-93 839.1 45.7 852 10-1008 3-875 (875)
2 smart00318 SNc Staphylococcal 99.9 6.2E-23 1.3E-27 203.8 18.1 130 11-149 2-137 (138)
3 smart00318 SNc Staphylococcal 99.9 8.3E-23 1.8E-27 202.9 18.3 138 185-363 1-138 (138)
4 PRK06518 hypothetical protein; 99.9 1.3E-22 2.8E-27 207.4 17.7 137 5-151 17-157 (177)
5 KOG2039 Transcriptional coacti 99.9 1.5E-22 3.3E-27 250.9 21.3 516 378-996 4-626 (875)
6 cd00175 SNc Staphylococcal nuc 99.9 2.5E-22 5.3E-27 197.1 15.9 122 18-149 1-128 (129)
7 cd00175 SNc Staphylococcal nuc 99.9 5.7E-22 1.2E-26 194.5 16.2 129 193-363 1-129 (129)
8 PF00567 TUDOR: Tudor domain; 99.8 4.1E-20 8.8E-25 177.6 12.9 119 759-884 2-121 (121)
9 COG1525 Micrococcal nuclease ( 99.8 1.3E-18 2.8E-23 182.7 14.6 127 12-151 42-172 (192)
10 PF00565 SNase: Staphylococcal 99.8 8.7E-19 1.9E-23 166.1 10.3 106 42-150 1-108 (108)
11 PRK06518 hypothetical protein; 99.8 1.1E-17 2.3E-22 171.4 16.9 136 182-363 19-156 (177)
12 PF00565 SNase: Staphylococcal 99.7 1.6E-17 3.4E-22 157.5 11.0 106 212-363 1-108 (108)
13 COG1525 Micrococcal nuclease ( 99.7 1.1E-15 2.3E-20 160.6 14.2 129 187-364 42-172 (192)
14 smart00333 TUDOR Tudor domain. 99.3 7.4E-12 1.6E-16 105.1 6.4 56 808-870 2-57 (57)
15 cd04508 TUDOR Tudor domains ar 99.3 7.6E-12 1.6E-16 101.2 5.5 48 812-865 1-48 (48)
16 KOG2279 Kinase anchor protein 98.9 9E-10 1.9E-14 125.8 6.4 189 757-963 401-600 (608)
17 smart00743 Agenet Tudor-like d 98.4 4E-07 8.6E-12 77.6 6.1 56 808-869 2-59 (61)
18 PF06003 SMN: Survival motor n 98.1 4.2E-06 9E-11 92.1 5.4 58 807-869 67-124 (264)
19 KOG2279 Kinase anchor protein 96.6 0.00069 1.5E-08 78.7 0.7 186 758-963 313-502 (608)
20 PF09465 LBR_tudor: Lamin-B re 96.2 0.019 4.1E-07 47.4 6.6 52 807-864 4-55 (55)
21 PF05641 Agenet: Agenet domain 94.5 0.071 1.5E-06 46.5 5.2 54 810-869 2-66 (68)
22 PF11717 Tudor-knot: RNA bindi 91.7 0.36 7.9E-06 40.3 5.2 51 810-864 2-54 (55)
23 KOG4327 mRNA splicing protein 91.4 0.13 2.8E-06 53.0 2.4 54 807-865 66-119 (218)
24 PF15057 DUF4537: Domain of un 90.1 0.67 1.5E-05 45.5 6.1 105 759-870 11-116 (124)
25 PF15057 DUF4537: Domain of un 89.3 0.9 1.9E-05 44.6 6.4 51 812-869 1-51 (124)
26 KOG3026 Splicing factor SPF30 88.8 0.57 1.2E-05 49.8 4.7 56 808-868 90-145 (262)
27 KOG3038 Histone acetyltransfer 83.6 3.8 8.2E-05 44.5 7.7 90 758-852 143-238 (264)
28 PF07039 DUF1325: SGF29 tudor- 63.5 12 0.00025 37.2 4.9 88 759-856 16-115 (130)
29 cd05162 PWWP The PWWP domain, 53.2 22 0.00048 32.3 4.6 62 810-872 2-67 (87)
30 PLN00104 MYST -like histone ac 49.8 27 0.0006 41.4 5.7 58 807-864 52-112 (450)
31 smart00293 PWWP domain with co 44.1 42 0.00092 28.7 4.6 56 810-866 2-62 (63)
32 PF09038 53-BP1_Tudor: Tumour 43.2 51 0.0011 32.1 5.4 49 810-865 4-52 (122)
33 cd05834 HDGF_related The PWWP 41.9 36 0.00078 31.0 4.0 60 809-871 3-62 (83)
34 cd05841 BS69_related The PWWP 34.8 57 0.0012 29.8 4.1 55 808-870 6-61 (83)
35 PF07039 DUF1325: SGF29 tudor- 28.8 1.7E+02 0.0036 29.1 6.7 54 810-868 1-60 (130)
36 KOG3038 Histone acetyltransfer 24.9 2.9E+02 0.0064 30.5 8.0 57 806-868 125-186 (264)
37 PF11302 DUF3104: Protein of u 24.3 2.3E+02 0.0051 25.4 5.9 59 808-866 5-70 (75)
38 PRK12442 translation initiatio 24.1 1.3E+02 0.0029 27.7 4.5 31 186-217 8-38 (87)
39 PRK07899 rpsA 30S ribosomal pr 23.4 1.4E+03 0.031 27.9 15.8 134 757-926 80-225 (486)
40 PF02736 Myosin_N: Myosin N-te 22.8 2E+02 0.0043 22.6 4.8 38 815-861 4-41 (42)
41 TIGR00008 infA translation ini 21.7 1.7E+02 0.0037 25.8 4.5 31 186-217 6-36 (68)
42 PF00855 PWWP: PWWP domain; I 21.4 1.7E+02 0.0037 26.1 4.8 57 810-867 2-59 (86)
43 KOG2185 Predicted RNA-processi 21.3 69 0.0015 37.3 2.6 53 807-867 179-231 (486)
44 PF08169 RBB1NT: RBB1NT (NUC16 20.6 2E+02 0.0043 27.1 5.0 58 811-869 8-68 (96)
45 cd06080 MUM1_like Mutated mela 20.5 2E+02 0.0044 26.1 4.9 53 810-868 2-55 (80)
No 1
>KOG2039 consensus Transcriptional coactivator p100 [Transcription]
Probab=100.00 E-value=4.7e-89 Score=839.12 Aligned_cols=852 Identities=44% Similarity=0.708 Sum_probs=733.3
Q ss_pred CcEEEEEeEeccCCeEEEeeCCCCCCCCCCceEEEEEeccCCCCCCCCC-CCChhHHHHHHHHHHHcCce-EEEEEeeee
Q 001739 10 GWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGG-LDEPFAWDSREFLRKLCIGK-VTFRVDYAV 87 (1019)
Q Consensus 10 ~~~~g~V~~V~sGDTi~v~~~~~~~~g~~~~~~vrL~~IdaPe~~~~~~-~~ep~a~eAre~Lr~~liGk-V~~~~~~~~ 87 (1019)
....|.|++|.|||.+.+++. +..+++++.+++|+++.+|++.++++ -++||+|++++|+|++++|| +.|..++..
T Consensus 3 ~~~~~~v~~v~s~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~p~~~~~~~~~~~~~~~k~~~v~~~~~~ 80 (875)
T KOG2039|consen 3 QRLVGYVKAVLSGDAFVIRGS--PRAGPPPEFQINLSNVKAPNEARRDKGVDEPFAWESREFLRKSEIGKEVAVTRDQMS 80 (875)
T ss_pred eEEeeeEEEEeccCccEEEcc--cccCCCCCceEEEeecCCccccccCCCCCCCcChhhHHHHHHHhccceeeeEEeeec
Confidence 356799999999999999985 45689999999999999999998852 37999999999999999999 999988844
Q ss_pred CCCCcEEEEEEeCCcchHHHHHhcCCEEEEEecCcCCCCchHHHHHHHHHHHHHHhCCCCCCCCCCCcccccccCCCCCC
Q 001739 88 PNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAI 167 (1019)
Q Consensus 88 ~~~gR~~g~v~~~g~~v~~~lv~~G~A~~~~~~~~~~~~~~~~~~l~~ae~~Ak~~~~GiWs~~~~~~~~~~~~~~~~~~ 167 (1019)
..++|.+|.+++++.++++.|+.+||+.+++... .+.++...+...|.+|++.++|+|+. .....+++.++.
T Consensus 81 ~~~~~e~~~~~~~~~~~a~~lv~~g~~~~~~~~~---~~~~~~~~l~~~~~~~k~~~~g~w~~----~~~~~~~~~~~~- 152 (875)
T KOG2039|consen 81 ANNGREVGFIYLGDENSAESLVKEGLLDVRDEGV---RNSSYFKTLDEVEVQAKQSGRGIWSK----LDHFIRNLKDSA- 152 (875)
T ss_pred cccccccceeecCcchhHHHHHhccCCccccccc---ccchhhhhhhhhhhhhhhhccccccc----cccceeeccccc-
Confidence 4579999999999999999999999999988763 33778889999999999999999993 334568888763
Q ss_pred CCCchhhHHHHhhhcCCCCccEEEEEEccCC-EEEEEEcCCceEEEEEEeeecCCCCCCCCCccccCcccccCCCccccc
Q 001739 168 GDSSNFNAMALLDANKGRPMQGIVEQARDGS-TLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAE 246 (1019)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~Ve~V~dG~-t~rv~~~~~~~~~~v~l~Gi~~P~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (1019)
.+++.|+..+.++++.|+||+|++|+ +.||++.+++..++++|+|+.||.+..+. ++.
T Consensus 153 -----~~p~~~~~~~~~~~~~~~ve~v~~~~~~~rv~~~p~~~~~~v~lSg~~~P~~~~~s-----------~~~----- 211 (875)
T KOG2039|consen 153 -----LNPAELVDAVGGKPVNAIVEHVRDGEDTVRVLLRPELKYVTVRLSGKRCPSQGPPS-----------DGS----- 211 (875)
T ss_pred -----cccHHHHHhcCCceeeeehhhccChhhhhhHHhccccceeEEecccccCCCCCCCC-----------CCC-----
Confidence 57789999988999999999999999 68888888888899999999999986532 110
Q ss_pred cccchhhHHHHhhhcccCCCCCCCchhHHHHHHHHHHHccCCEEEEEEeeecCCCCEEEEEEeCCCCChhHHHHHHHhcC
Q 001739 247 AVAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENG 326 (1019)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~epf~~eAk~f~~~~ll~r~V~i~~~~~d~~g~~~~~V~~~~g~~~~di~~~Ll~~G 326 (1019)
....+||+.+|+.|++.++++|+|.|.+++...+..++|+|++++|+ |++.|+.+|
T Consensus 212 --------------------~~~~~~~~~~a~~f~~~~~~~r~~~i~~~~~~~~~~~~g~v~~~~~~----i~~~~~~~~ 267 (875)
T KOG2039|consen 212 --------------------PSVPDPFADEAKLFSEDRLLQRAVAIPLESEENYVFFVGDVLYPDGN----IALELLSEG 267 (875)
T ss_pred --------------------CCCCCcHHHHHHHhcccchhhhceeeeeccccccccccccccccccc----eeeehhccc
Confidence 12358999999999999999999999999998887789999999994 999999999
Q ss_pred cEEEEecccccchHHHHHHHHHHHHHHHHhcccc-ccCCCCCCCCcccccccceeEEEEEEeeCcEEEEecCCCCCCCCc
Q 001739 327 LAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRM-WTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNAL 405 (1019)
Q Consensus 327 la~~~~~~~~~~~~~~~~~l~~ae~~Ak~~r~g~-W~~~~~~~~~~~~~~~~~~~~~V~~v~~gd~i~v~~~~~~~~~~~ 405 (1019)
++++++|+...++.+....++.++..++..+.++ |++|.++.+.++.+.++.|.+.|++++++||+.+..++ |+
T Consensus 268 ~~k~v~~s~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~q~~~s~~~~~~~~~~~~~v~e~~~~d~~~~~~~s---g~-- 342 (875)
T KOG2039|consen 268 LAKCVDWSKNEIPCGAAKKLRAAERLAKEHRLRVLWKNYQVPLSTSESIDDKGFSGKVVEVLVSDCVLVALDS---GS-- 342 (875)
T ss_pred hHHHHHhhhhccCchhhhhhhHHhhccchhHHHHHHhccccccchheeeccccccceeeeeeccCceEEecCC---CC--
Confidence 9999999999888888778999999999999999 99999999888877788999999999999999999876 33
Q ss_pred ceeEEEEeeccCCCCCCCCCCCC--CcchHHHHHHHHHhhcCCcEEEEEEEEEeeccccccccccCCCCCCCCCCCCCCc
Q 001739 406 AERRVNLSSIRCPKIGNPRKDEK--PAAYAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAKGPAGTKGPAGTK 483 (1019)
Q Consensus 406 ~e~~v~l~~i~~p~~~~~~~~~~--~~~~~~ea~e~lr~~~iGk~v~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (1019)
+.++.+++|+.|+.+++.+..+ ..||+++|++|||+++||++|.+.++|.++... .
T Consensus 343 -~~~~~~~~i~~pr~~~~~~~~~p~~~~~q~~a~~~~~~~~i~~~v~~~~~~~~~~~~----------------~----- 400 (875)
T KOG2039|consen 343 -ENKLFLSSIRLPRAGEPGRSLKPYISPVQLVAREFLRKKLIGKRVILQMDVIRPRRE----------------N----- 400 (875)
T ss_pred -ceEEEeeeccCccccccccccCCccccHHHHhhhhhhhhccCceeeEeeeccccccc----------------c-----
Confidence 7899999999999444333334 489999999999999999999999999886310 0
Q ss_pred CccccCCCCCCCccCccccceeeeeEEEecCCCCCCCCCchhhhccccCCCCCCcchHHHHHHccceEEEecC-Cccccc
Q 001739 484 GQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGNVINHR-DFEERS 562 (1019)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~lv~~G~a~v~~~~-~~~~~~ 562 (1019)
+. ..-+.+++ .+|.|+++.++.+|++++.+|| .+..++
T Consensus 401 ----------------~~---~~~c~~~~----------------------~~~~~~a~~~~~kg~~~~v~~~~~~~~~s 439 (875)
T KOG2039|consen 401 ----------------VP---TKVCALPL----------------------GGGKNVAELLVKKGLATVVRKRQDDEQRS 439 (875)
T ss_pred ----------------cc---cccccccC----------------------CCcceeeEEEecccchhhhhhHhhhhhhc
Confidence 00 01111222 2468999999999999999999 667889
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCCCCcceeEeCCCcchhchh-ccccccccCCccCEEEEEEecCCEEEEEecCCcceE
Q 001739 563 NYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKAR-DFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSI 641 (1019)
Q Consensus 563 ~~~~~l~~~e~~A~~~~~G~~~~~~~~~~~~~d~~~~~~~~~k-~fl~~l~r~~~l~~vVe~V~~G~~~rv~lp~~~~~i 641 (1019)
+.||.|+.+|..|..+++|+|+.+..+.+.+.+++. ...+.+ .|+++++++..+..+|+++++|+++++++|++.+.+
T Consensus 440 ~~~d~ll~~E~~~~~~~~~~~s~~~~~~~~~~~~~~-~i~~n~~~~~~~~~~~~~~~~~v~~~~~gs~~~~~~pk~~~~~ 518 (875)
T KOG2039|consen 440 SHYDLLLVAEAIAIKGKKGCHSKKLDPTLRITDLTV-DIVRNKVQFLPSLDRGNRVEAIVEAVISGSRLRLYIPKETCYC 518 (875)
T ss_pred chhhhhhcchHHHHhhhhhhcccCCCcceeechhhh-hhhcCcEEeehhhccccceeeeeeeeeccccceeccCCcceeE
Confidence 999999999999999999999987776677888864 333444 899999999999999999999999999999999999
Q ss_pred EEEEecccCCC-------CCCcChHHHHHHHHHHhcCceEEEEEEEECCCCcEEEEEEeC-CccHHHHHHHcCCEEEeee
Q 001739 642 AFSFSGVRCPG-------RNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWES-RTNVAVILLEAGLAKLQTS 713 (1019)
Q Consensus 642 ~~~LaGI~~P~-------~~e~w~~EA~~flk~~ll~R~V~v~V~~~Dk~G~~~g~L~~~-~~nIa~~Ll~~GlA~v~~~ 713 (1019)
+|.++|++||+ .+++|+.+|..|++.+++++++.+.+..+++.|++++.++.+ +.+++..++++||+.++
T Consensus 519 ~~~~~g~~~~~~~r~~~~~~e~~~~~~~~~~~~~vl~~~~~l~v~~~~~~~~~l~~~~~~~~~~~s~~~~e~~L~~~~-- 596 (875)
T KOG2039|consen 519 QFALAGIDCPSGARNDVQEGEPFSEEAIEFTRSLVLQREVELEVEITDKNGNFLGSLYEDSKTNLSLKLLEQGLAPEH-- 596 (875)
T ss_pred EEeeccccCcccccccccccCCccHHHHHHhhhheeccceEEEEeeeccCccccccccccccccchhhhhhhhcCccc--
Confidence 99999999996 488999999999999999999999999999999999999887 88999999999999996
Q ss_pred cCCCCCCchhHHHHHHHHHH-hhccccccccccccccc--CCCcccCCCccEEEEEEEEEecCCeEEEEEcCc-hhHHHH
Q 001739 714 FGSDRIPDSHLLEQAEKSAK-SQKLKIWENYVEGEEVS--NGAAVEGKQKEVLKVVVTEILGGGKFYVQQVGD-QKVASV 789 (1019)
Q Consensus 714 ~s~~~~~~~~~L~~AE~~AK-~~k~glW~~~~p~~~~~--~~~~~~~~~~~~~~V~VT~V~sp~~FyvQ~~~~-~~l~~L 789 (1019)
|..+++.....|..++..|| ..+.++|.++.++..+. ....+......+..++++.+..++.||+|..+. ..+++|
T Consensus 597 ~~~e~~~~~~~~~s~~~~ak~~~k~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~i~p~~~F~~q~~~~~~~i~~~ 676 (875)
T KOG2039|consen 597 FAAERSSEYPPLESAELPAKLEQKLKIWLNYVEPVVEEVVLCLEKDERDLNTLKVVVTEITPGKGFYVQSISDGSKITKI 676 (875)
T ss_pred hhhhhhhhccchhhhhhccccchhcceeecccccchhhheecccccccccccceeeEeeecCCCcceeecccchHHHHHH
Confidence 76666666677888999999 89999999988763221 111111123456677777777669999999984 789999
Q ss_pred HHHHHHHHccCCCCCCCCCCcCCCeEEEEEcCCCcEEEEEEEeecccccccCCCEEEEEEEecCCceeecCCCcccCCcc
Q 001739 790 QQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPS 869 (1019)
Q Consensus 790 ~~~L~~~~~~~~~~~~~~~p~~G~lc~A~fs~D~~WYRA~V~~i~~~~~~~~~~~v~V~fVDYGn~e~V~~~~Lr~Lp~~ 869 (1019)
+..|+.......+..+++.|+.|++|+|+|+.|++||||.|+.+. +...+.|+||||||.+++|+.+|++||+.
T Consensus 677 ~~~~~~~~~~~~~~~~~~~p~~gd~c~A~y~~D~qwyRa~i~~V~------~~~~~~V~yiDygn~E~lp~~~l~~lp~~ 750 (875)
T KOG2039|consen 677 MTNLSQLVELKPPSSGSYTPKRGDLCVAKYSLDGQWYRALIVEVL------DPESMEVFYIDYGNIETLPFVRLKPLPPH 750 (875)
T ss_pred HHHHHHHhhhcccccCCCCCCCCCeeeeeeccccceeeeeeeeec------cCcceeEEEEecCcccccccccccCCChH
Confidence 999999888767777889999999999999999999999999984 22899999999999999999999999999
Q ss_pred ccCCCCceEEEEecceecCCCCCCCcHHHHHHHhhccccCCCEEEEEEEEEeCCCCcccCCCCcceEEEEEEecCCCCcH
Q 001739 870 LSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFRALVEERDSSGGKLKGQGTGTLLHVTLVAVDAEISI 949 (1019)
Q Consensus 870 f~~lP~qAi~C~LagV~p~~~~~~Ws~eA~~~f~~lllv~~k~l~a~V~~~~~~g~~i~~~~~~~~~~V~L~d~~~~~sI 949 (1019)
|..+|++|.+|+|++|+++. ..+..++++.+|.+ ...++.+++.+..... ++.++++|+...+..++
T Consensus 751 ~~~~p~~a~~~~L~~ik~~~-~~~~~e~~i~~l~~--~~~~~~~~~~~~~~i~----------~~~~~~~l~~~~~~~d~ 817 (875)
T KOG2039|consen 751 FSLLPPVAQECGLAGIKEPQ-LEDLKEEAIRYLDE--DTLGHKCQVNVELRVV----------GNSLLVTLLYTVEELDV 817 (875)
T ss_pred HhcCchHHhhhhhhcccCCc-ccchHHHHHHHHHH--Hhhcccceeeeeeeee----------ccceeEEEeeecCcCCh
Confidence 99999999999999999985 57889999999999 6677777776443321 45688999888789999
Q ss_pred HHHHHH-cCCeeeecccccCchhhHHHHHHHHHHHHHHHHhccCccccCCCCCCCCCCCc
Q 001739 950 NTLMVQ-EGLARVERRKRWGSRDRQAALENLEKFQEEAKTARIGMWQYGDIQSDDEDPLP 1008 (1019)
Q Consensus 950 n~~LV~-~GlA~~~~~~~~~~~~~~~~~~~l~~aq~~Ak~~r~giW~yGD~~~Dde~~~~ 1008 (1019)
++.|+. .|+.....++. .+.++...+.|+.+|+.|++.|+++|.|||++.+|+++++
T Consensus 818 ~~~l~~~~~l~~~~~~~~--~~~~q~~~~~~~~~qq~a~~~~~~~~~y~~~~~~~~~~~~ 875 (875)
T KOG2039|consen 818 GEELVAVEGLSLVEQRKT--EEVLQALLDQLEKAQQEARKEHLNIWFYGDVTGKDADEVV 875 (875)
T ss_pred hHhhhhhccccccccccc--chHHHHHhhHhhhchhhHHhhhhhhhhhcCcccCcccccC
Confidence 999999 99999887662 2667999999999999999999999999999999998863
No 2
>smart00318 SNc Staphylococcal nuclease homologues.
Probab=99.90 E-value=6.2e-23 Score=203.82 Aligned_cols=130 Identities=39% Similarity=0.513 Sum_probs=111.7
Q ss_pred cEEEEEeEeccCCeEEEeeCCCCCCCCCCceEEEEEeccCCCCCCCCCC----CChhHHHHHHHHHHHcCce-EEEEEee
Q 001739 11 WYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGL----DEPFAWDSREFLRKLCIGK-VTFRVDY 85 (1019)
Q Consensus 11 ~~~g~V~~V~sGDTi~v~~~~~~~~g~~~~~~vrL~~IdaPe~~~~~~~----~ep~a~eAre~Lr~~liGk-V~~~~~~ 85 (1019)
.+.|+|.+|+|||||.|...+ | ...+|||+||||||..+.... .+|||.+|++||+++|.|+ |+|.++.
T Consensus 2 ~~~~~V~~V~DGDT~~v~~~~----~--~~~~vrL~gIdaPe~~~~~~~~~~~~~~~g~~A~~~l~~~l~g~~V~~~~~~ 75 (138)
T smart00318 2 EIRGVVERVLDGDTIRVRLPK----N--KLITIRLSGIDAPETARPNKGDGTTDEPFGEEAKEFLKKLLLGKKVQVEVDS 75 (138)
T ss_pred ceeEEEEEEecCCEEEEEeCC----C--CEEEEEEEeccCCccCCCCCCCccccCcHHHHHHHHHHHHhCCCEEEEEEec
Confidence 468999999999999999762 2 478999999999999866543 6999999999999999999 9999876
Q ss_pred eeCCCCcEEEEEEe-CCcchHHHHHhcCCEEEEEecCcCCCCchHHHHHHHHHHHHHHhCCCCCC
Q 001739 86 AVPNIGREFGTVIL-GDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWS 149 (1019)
Q Consensus 86 ~~~~~gR~~g~v~~-~g~~v~~~lv~~G~A~~~~~~~~~~~~~~~~~~l~~ae~~Ak~~~~GiWs 149 (1019)
.++|||.+|+||+ +|.|||++||++|||+++.... ......+.+|..||++||++++|||+
T Consensus 76 -~D~~gr~~a~v~~~~~~~l~~~Lv~~G~A~~~~~~~--~~~~~~~~~l~~ae~~Ar~~~~GlW~ 137 (138)
T smart00318 76 -KDRYGRFLGTVYLNGGNNIAEELVKEGLAKVYRYAD--KDEYRVYDELLEAEEAAKKARKGLWS 137 (138)
T ss_pred -cCCCCCEEEEEEECCCCcHHHHHHhcCCEEEEEecC--ccccHhHHHHHHHHHHHHHhCcCCCC
Confidence 5779999999999 5678999999999999988653 11122267899999999999999997
No 3
>smart00318 SNc Staphylococcal nuclease homologues.
Probab=99.90 E-value=8.3e-23 Score=202.90 Aligned_cols=138 Identities=33% Similarity=0.583 Sum_probs=116.5
Q ss_pred CCccEEEEEEccCCEEEEEEcCCceEEEEEEeeecCCCCCCCCCccccCcccccCCCccccccccchhhHHHHhhhcccC
Q 001739 185 RPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTASA 264 (1019)
Q Consensus 185 ~~~~~~Ve~V~dG~t~rv~~~~~~~~~~v~l~Gi~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (1019)
++++|+|++|.|||||+|.+.+ ++.++|||+||+||++..... .
T Consensus 1 ~~~~~~V~~V~DGDT~~v~~~~-~~~~~vrL~gIdaPe~~~~~~-----------~------------------------ 44 (138)
T smart00318 1 KEIRGVVERVLDGDTIRVRLPK-NKLITIRLSGIDAPETARPNK-----------G------------------------ 44 (138)
T ss_pred CceeEEEEEEecCCEEEEEeCC-CCEEEEEEEeccCCccCCCCC-----------C------------------------
Confidence 3578999999999999998764 367899999999999875320 0
Q ss_pred CCCCCCchhHHHHHHHHHHHccCCEEEEEEeeecCCCCEEEEEEeCCCCChhHHHHHHHhcCcEEEEecccccchHHHHH
Q 001739 265 GQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKR 344 (1019)
Q Consensus 265 ~~~~~~epf~~eAk~f~~~~ll~r~V~i~~~~~d~~g~~~~~V~~~~g~~~~di~~~Ll~~Gla~~~~~~~~~~~~~~~~ 344 (1019)
...+.+|||.+|+.|++.+|++|+|+|.+.+.|+|||++|+|++.+|. ||+++||++|||+++.+........ ..
T Consensus 45 -~~~~~~~~g~~A~~~l~~~l~g~~V~~~~~~~D~~gr~~a~v~~~~~~---~l~~~Lv~~G~A~~~~~~~~~~~~~-~~ 119 (138)
T smart00318 45 -DGTTDEPFGEEAKEFLKKLLLGKKVQVEVDSKDRYGRFLGTVYLNGGN---NIAEELVKEGLAKVYRYADKDEYRV-YD 119 (138)
T ss_pred -CccccCcHHHHHHHHHHHHhCCCEEEEEEeccCCCCCEEEEEEECCCC---cHHHHHHhcCCEEEEEecCccccHh-HH
Confidence 012368999999999999999999999999999999999999998776 4999999999999998765543322 34
Q ss_pred HHHHHHHHHHHhccccccC
Q 001739 345 RLKAADLQAKKTRLRMWTN 363 (1019)
Q Consensus 345 ~l~~ae~~Ak~~r~g~W~~ 363 (1019)
.|.+||++||++++|||++
T Consensus 120 ~l~~ae~~Ar~~~~GlW~~ 138 (138)
T smart00318 120 ELLEAEEAAKKARKGLWSD 138 (138)
T ss_pred HHHHHHHHHHHhCcCCCCC
Confidence 8999999999999999974
No 4
>PRK06518 hypothetical protein; Provisional
Probab=99.89 E-value=1.3e-22 Score=207.44 Aligned_cols=137 Identities=20% Similarity=0.244 Sum_probs=112.6
Q ss_pred ccCCCCcEEEEEeEeccCCeEEEeeCCCCCCCCCCceEEEEEeccCCCCCCC---CCCCChhHHHHHHHHHHHcCce-EE
Q 001739 5 AAAGGGWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARR---GGLDEPFAWDSREFLRKLCIGK-VT 80 (1019)
Q Consensus 5 ~~~~~~~~~g~V~~V~sGDTi~v~~~~~~~~g~~~~~~vrL~~IdaPe~~~~---~~~~ep~a~eAre~Lr~~liGk-V~ 80 (1019)
|......+.|+| +|+|||||+|.... . .....++|||+||||||+... ++..+|||.+|+++|+.++.|+ |+
T Consensus 17 ~~~~~~~~~G~v-~V~DGDTl~l~~~~-~--~~~~~~~VRL~GIDAPE~~Q~c~~~~~~wp~G~~A~~~L~~li~gk~V~ 92 (177)
T PRK06518 17 ASNNVVIFHGRA-QVTSGVTFKLIADG-W--RKEITRDIRLYGVDTCAPRQKARLGDQEWPCGAVATAWLVTKTLNKWLS 92 (177)
T ss_pred cccccccccceE-EEEcCCEEEEeecc-c--cCCCCeEEEEEEEcCCCCCCcccCCCCCCcHHHHHHHHHHHHHCCCeEE
Confidence 345666788998 79999999997431 0 011257899999999998753 3467899999999999999999 99
Q ss_pred EEEeeeeCCCCcEEEEEEeCCcchHHHHHhcCCEEEEEecCcCCCCchHHHHHHHHHHHHHHhCCCCCCCC
Q 001739 81 FRVDYAVPNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKV 151 (1019)
Q Consensus 81 ~~~~~~~~~~gR~~g~v~~~g~~v~~~lv~~G~A~~~~~~~~~~~~~~~~~~l~~ae~~Ak~~~~GiWs~~ 151 (1019)
|.... ++|||.+|+||++|.|||++||++|||+++..+. +..+...|..+|++||++++|||+.+
T Consensus 93 ~~~~~--D~ygR~lA~~~~~g~dln~~mV~~G~A~ay~~~~----~~~~~~~y~~aE~~AR~~k~GLW~~~ 157 (177)
T PRK06518 93 CRQAR--MENGVHYAQCFVDGVDIAALGLAEGMAVLSKDDH----EDPGPAQYASLEEKARKAYRGLWSST 157 (177)
T ss_pred EEEec--ccCCCEEEEEEECCEEHHHHHHhCCCEEEEeecc----CCCCHHHHHHHHHHHHHhCCCCCCCC
Confidence 99643 7899999999999999999999999999988753 12234579999999999999999954
No 5
>KOG2039 consensus Transcriptional coactivator p100 [Transcription]
Probab=99.89 E-value=1.5e-22 Score=250.94 Aligned_cols=516 Identities=25% Similarity=0.330 Sum_probs=362.6
Q ss_pred ceeEEEEEEeeCcEEEEecCCCCCCCCcceeEEEEeeccCCCCCCCCCCCCCcchHHHHHHHHHhhcCCcEEEEEEEEEe
Q 001739 378 NFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGNPRKDEKPAAYAREAREFLRTRLIGRQVNVQMEYSR 457 (1019)
Q Consensus 378 ~~~~~V~~v~~gd~i~v~~~~~~~~~~~~e~~v~l~~i~~p~~~~~~~~~~~~~~~~ea~e~lr~~~iGk~v~~~~~y~~ 457 (1019)
...|.|..|.|||+++|+. .+.+.++++..++|+++.+|++.....+ .++||+|++++|+|+.++||.+.|..+|.
T Consensus 4 ~~~~~v~~v~s~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~d~p~~~~~~~~~~~~~~~k~~~v~~~~~- 79 (875)
T KOG2039|consen 4 RLVGYVKAVLSGDAFVIRG--SPRAGPPPEFQINLSNVKAPNEARRDKG-VDEPFAWESREFLRKSEIGKEVAVTRDQM- 79 (875)
T ss_pred EEeeeEEEEeccCccEEEc--ccccCCCCCceEEEeecCCccccccCCC-CCCCcChhhHHHHHHHhccceeeeEEeee-
Confidence 4579999999999999998 3335677899999999999998742212 27999999999999999999999999993
Q ss_pred eccccccccccCCCCCCCCCCCCCCcCccccCCCCCCCccCccccceeeeeEEEecCCCCCCCCCchhhhccccCCCCCC
Q 001739 458 KVVVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAG 537 (1019)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (1019)
... . .+.+|.++++ +
T Consensus 80 ~~~----------------~--------------------------~~e~~~~~~~-----------------------~ 94 (875)
T KOG2039|consen 80 SAN----------------N--------------------------GREVGFIYLG-----------------------D 94 (875)
T ss_pred ccc----------------c--------------------------ccccceeecC-----------------------c
Confidence 211 1 3568888873 3
Q ss_pred cchHHHHHHccceEEEecCCccccchHHHHHHHHHHHHHhcCCCCCCCCCCCcceeEeCCCcchhchhccccccccCCcc
Q 001739 538 VNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRI 617 (1019)
Q Consensus 538 ~n~~~~lv~~G~a~v~~~~~~~~~~~~~~~l~~~e~~A~~~~~G~~~~~~~~~~~~~d~~~~~~~~~k~fl~~l~r~~~l 617 (1019)
.++++.|+..|++++.+..... ++|...|.+.|.+|++.++|+|+. .. +.+.++.. ....++.|+... .++++
T Consensus 95 ~~~a~~lv~~g~~~~~~~~~~~--~~~~~~l~~~~~~~k~~~~g~w~~-~~--~~~~~~~~-~~~~p~~~~~~~-~~~~~ 167 (875)
T KOG2039|consen 95 ENSAESLVKEGLLDVRDEGVRN--SSYFKTLDEVEVQAKQSGRGIWSK-LD--HFIRNLKD-SALNPAELVDAV-GGKPV 167 (875)
T ss_pred chhHHHHHhccCCccccccccc--chhhhhhhhhhhhhhhhccccccc-cc--cceeeccc-cccccHHHHHhc-CCcee
Confidence 6999999999999998764221 789999999999999999999993 22 22667753 455667787766 57999
Q ss_pred CEEEEEEecCC-EEEEEecCCcceEEEEEecccCCCC----------CCcChHHHHHHHHHHhcCceEEEEEEEECCCCc
Q 001739 618 PAVVEYVLSGH-RFKVLIPKETCSIAFSFSGVRCPGR----------NERYSNEALLLMRQKILQRDVEIEVETVDRTGT 686 (1019)
Q Consensus 618 ~~vVe~V~~G~-~~rv~lp~~~~~i~~~LaGI~~P~~----------~e~w~~EA~~flk~~ll~R~V~v~V~~~Dk~G~ 686 (1019)
.|+||+|.+|+ +.|+++-++...+++.|+|+.||.. ..+|+.+|..|+...+++|.+.+.+.+....-.
T Consensus 168 ~~~ve~v~~~~~~~rv~~~p~~~~~~v~lSg~~~P~~~~~s~~~~~~~~~~~~~a~~f~~~~~~~r~~~i~~~~~~~~~~ 247 (875)
T KOG2039|consen 168 NAIVEHVRDGEDTVRVLLRPELKYVTVRLSGKRCPSQGPPSDGSPSVPDPFADEAKLFSEDRLLQRAVAIPLESEENYVF 247 (875)
T ss_pred eeehhhccChhhhhhHHhccccceeEEecccccCCCCCCCCCCCCCCCCcHHHHHHHhcccchhhhceeeeecccccccc
Confidence 99999999999 6777765577789999999999983 267999999999999999999999999876645
Q ss_pred EEEEEEeCCccHHHHHHHcCCEEEeeecCCCCCC--chhHHHHHHHHHHhhcccc-cccccccccccCC-----------
Q 001739 687 FLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIP--DSHLLEQAEKSAKSQKLKI-WENYVEGEEVSNG----------- 752 (1019)
Q Consensus 687 ~~g~L~~~~~nIa~~Ll~~GlA~v~~~~s~~~~~--~~~~L~~AE~~AK~~k~gl-W~~~~p~~~~~~~----------- 752 (1019)
+.|+++++..+++..|+.+|++++. .++....+ ....++.++..++..+..+ |+++.++....+.
T Consensus 248 ~~g~v~~~~~~i~~~~~~~~~~k~v-~~s~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~q~~~s~~~~~~~~~~~~~v~ 326 (875)
T KOG2039|consen 248 FVGDVLYPDGNIALELLSEGLAKCV-DWSKNEIPCGAAKKLRAAERLAKEHRLRVLWKNYQVPLSTSESIDDKGFSGKVV 326 (875)
T ss_pred ccccccccccceeeehhccchHHHH-HhhhhccCchhhhhhhHHhhccchhHHHHHHhccccccchheeeccccccceee
Confidence 6788888777999999999999986 34433222 3345788888899888888 9988655321000
Q ss_pred -----Cc--ccCCCccEEEE---------------------------------------------------------EEE
Q 001739 753 -----AA--VEGKQKEVLKV---------------------------------------------------------VVT 768 (1019)
Q Consensus 753 -----~~--~~~~~~~~~~V---------------------------------------------------------~VT 768 (1019)
.. .....+....+ .+.
T Consensus 327 e~~~~d~~~~~~~sg~~~~~~~~~i~~pr~~~~~~~~~p~~~~~q~~a~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~c 406 (875)
T KOG2039|consen 327 EVLVSDCVLVALDSGSENKLFLSSIRLPRAGEPGRSLKPYISPVQLVAREFLRKKLIGKRVILQMDVIRPRRENVPTKVC 406 (875)
T ss_pred eeeccCceEEecCCCCceEEEeeeccCccccccccccCCccccHHHHhhhhhhhhccCceeeEeeecccccccccccccc
Confidence 00 00000111111 122
Q ss_pred EEecCCe---EEEEEcCc----hhHHHHHHHHHHHHccCCCCCCCCCCcCCCeEEEEEcCC-CcEEEEEEEeeccccccc
Q 001739 769 EILGGGK---FYVQQVGD----QKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSAD-NSWNRAMIVNAPREKVES 840 (1019)
Q Consensus 769 ~V~sp~~---FyvQ~~~~----~~l~~L~~~L~~~~~~~~~~~~~~~p~~G~lc~A~fs~D-~~WYRA~V~~i~~~~~~~ 840 (1019)
.+.+++. +++....+ ....++-.+++..|.. -+........|..++..+..+ ..|++..+..+.
T Consensus 407 ~~~~~~~~~~a~~~~~kg~~~~v~~~~~~~~~s~~~d~--ll~~E~~~~~~~~~~~s~~~~~~~~~~~~~~~i~------ 478 (875)
T KOG2039|consen 407 ALPLGGGKNVAELLVKKGLATVVRKRQDDEQRSSHYDL--LLVAEAIAIKGKKGCHSKKLDPTLRITDLTVDIV------ 478 (875)
T ss_pred cccCCCcceeeEEEecccchhhhhhHhhhhhhcchhhh--hhcchHHHHhhhhhhcccCCCcceeechhhhhhh------
Confidence 2222331 12222110 1111222223333310 111112233455555555444 679999999885
Q ss_pred CCCEEEEEEEecCCceeecCCCcccCCccccCCCCceEEEEecceec--CC-------CCCCCcHHHHHHHhhccccCCC
Q 001739 841 VNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKI--PA-------LEDEYGPEAAEFLNEHTYNSSN 911 (1019)
Q Consensus 841 ~~~~v~V~fVDYGn~e~V~~~~Lr~Lp~~f~~lP~qAi~C~LagV~p--~~-------~~~~Ws~eA~~~f~~lllv~~k 911 (1019)
......+.+.|.|+........+..-..-...+|.....|+++.-.. +. .+..|..+++++.+. ++..+
T Consensus 479 ~n~~~~~~~~~~~~~~~~~v~~~~~gs~~~~~~pk~~~~~~~~~~g~~~~~~~r~~~~~~e~~~~~~~~~~~~--~vl~~ 556 (875)
T KOG2039|consen 479 RNKVQFLPSLDRGNRVEAIVEAVISGSRLRLYIPKETCYCQFALAGIDCPSGARNDVQEGEPFSEEAIEFTRS--LVLQR 556 (875)
T ss_pred cCcEEeehhhccccceeeeeeeeeccccceeccCCcceeEEEeeccccCcccccccccccCCccHHHHHHhhh--heecc
Confidence 45668888889998777666666665566678888888877655443 21 267899999999999 77889
Q ss_pred EEEEEEEEEeCCCCcccCCCCcceEEEEEEecCCCCcHHHHHHHcCCeeeecccccCchhhHHHHHHHHHHHHHHH-Hhc
Q 001739 912 EFRALVEERDSSGGKLKGQGTGTLLHVTLVAVDAEISINTLMVQEGLARVERRKRWGSRDRQAALENLEKFQEEAK-TAR 990 (1019)
Q Consensus 912 ~l~a~V~~~~~~g~~i~~~~~~~~~~V~L~d~~~~~sIn~~LV~~GlA~~~~~~~~~~~~~~~~~~~l~~aq~~Ak-~~r 990 (1019)
.+.+.|.....+|.+ +.+... +.+.++...++++||+-.. .. ..+...+..|..++..|+ +..
T Consensus 557 ~~~l~v~~~~~~~~~---------l~~~~~--~~~~~~s~~~~e~~L~~~~-~~----~e~~~~~~~~~s~~~~ak~~~k 620 (875)
T KOG2039|consen 557 EVELEVEITDKNGNF---------LGSLYE--DSKTNLSLKLLEQGLAPEH-FA----AERSSEYPPLESAELPAKLEQK 620 (875)
T ss_pred ceEEEEeeeccCccc---------cccccc--cccccchhhhhhhhcCccc-hh----hhhhhhccchhhhhhccccchh
Confidence 999999998876532 112111 1267888899999998776 11 234567888899999999 999
Q ss_pred cCcccc
Q 001739 991 IGMWQY 996 (1019)
Q Consensus 991 ~giW~y 996 (1019)
.+||.-
T Consensus 621 ~~~~~~ 626 (875)
T KOG2039|consen 621 LKIWLN 626 (875)
T ss_pred cceeec
Confidence 999964
No 6
>cd00175 SNc Staphylococcal nuclease homologues. SNase homologues are found in bacteria, archaea, and eukaryotes. They contain no disufide bonds.
Probab=99.89 E-value=2.5e-22 Score=197.12 Aligned_cols=122 Identities=40% Similarity=0.562 Sum_probs=108.1
Q ss_pred EeccCCeEEEeeCCCCCCCCCCceEEEEEeccCCCCCCC----CCCCChhHHHHHHHHHHHcCce-EEEEEeeeeCCCCc
Q 001739 18 AVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARR----GGLDEPFAWDSREFLRKLCIGK-VTFRVDYAVPNIGR 92 (1019)
Q Consensus 18 ~V~sGDTi~v~~~~~~~~g~~~~~~vrL~~IdaPe~~~~----~~~~ep~a~eAre~Lr~~liGk-V~~~~~~~~~~~gR 92 (1019)
+|+|||||+|.... + ...+|||+||||||+.+. ....+|||.+|++||+++|.|+ |+|.++. .+++||
T Consensus 1 rV~dGDt~~v~~~~----~--~~~~vrL~gId~Pe~~~~~~~~~~~~~~~g~~A~~~l~~~l~~~~V~i~~~~-~d~~gr 73 (129)
T cd00175 1 RVIDGDTIRVRLPP----G--PLITVRLSGIDAPETARPNKGKSETDEPFGEEAKEFLKKLLLGKKVQVEVDS-KDRYGR 73 (129)
T ss_pred CeecCcEEEEEeCC----C--CEEEEEEEeecCccccCCccCCCCCCCchHHHHHHHHHHHhCCCEEEEEEcc-CCCCCC
Confidence 48999999999862 2 478999999999999865 3468999999999999999999 9999876 567999
Q ss_pred EEEEEEeCC-cchHHHHHhcCCEEEEEecCcCCCCchHHHHHHHHHHHHHHhCCCCCC
Q 001739 93 EFGTVILGD-KNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWS 149 (1019)
Q Consensus 93 ~~g~v~~~g-~~v~~~lv~~G~A~~~~~~~~~~~~~~~~~~l~~ae~~Ak~~~~GiWs 149 (1019)
.+|+||+++ .+||++||++|||+++.... ..+.++..|..||++||++++|||+
T Consensus 74 ~la~v~~~~~~~v~~~Lv~~G~A~~~~~~~---~~~~~~~~l~~ae~~Ak~~k~GiW~ 128 (129)
T cd00175 74 TLGTVYLNGGENIAEELVKEGLARVYRYYP---DDSEYYDELLEAEEAAKKARKGLWS 128 (129)
T ss_pred EEEEEEeCCCCcHHHHHHhcCCEEEEEECC---CCcHHHHHHHHHHHHHHHhCcCCCC
Confidence 999999987 99999999999999998763 2246889999999999999999997
No 7
>cd00175 SNc Staphylococcal nuclease homologues. SNase homologues are found in bacteria, archaea, and eukaryotes. They contain no disufide bonds.
Probab=99.88 E-value=5.7e-22 Score=194.54 Aligned_cols=129 Identities=34% Similarity=0.604 Sum_probs=110.0
Q ss_pred EEccCCEEEEEEcCCceEEEEEEeeecCCCCCCCCCccccCcccccCCCccccccccchhhHHHHhhhcccCCCCCCCch
Q 001739 193 QARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTASAGQQSTDEP 272 (1019)
Q Consensus 193 ~V~dG~t~rv~~~~~~~~~~v~l~Gi~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ep 272 (1019)
+|.|||||+|...+. +.++|||+||+||++....+ + ...+.+|
T Consensus 1 rV~dGDt~~v~~~~~-~~~~vrL~gId~Pe~~~~~~-----------~-------------------------~~~~~~~ 43 (129)
T cd00175 1 RVIDGDTIRVRLPPG-PLITVRLSGIDAPETARPNK-----------G-------------------------KSETDEP 43 (129)
T ss_pred CeecCcEEEEEeCCC-CEEEEEEEeecCccccCCcc-----------C-------------------------CCCCCCc
Confidence 589999999987644 67899999999999865320 0 0235799
Q ss_pred hHHHHHHHHHHHccCCEEEEEEeeecCCCCEEEEEEeCCCCChhHHHHHHHhcCcEEEEecccccchHHHHHHHHHHHHH
Q 001739 273 FALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQ 352 (1019)
Q Consensus 273 f~~eAk~f~~~~ll~r~V~i~~~~~d~~g~~~~~V~~~~g~~~~di~~~Ll~~Gla~~~~~~~~~~~~~~~~~l~~ae~~ 352 (1019)
||.+|++|++.+|++|+|+|.+.+.|+|||++|+|++.++. ||+++||++|||+++.+.... ......|.+||++
T Consensus 44 ~g~~A~~~l~~~l~~~~V~i~~~~~d~~gr~la~v~~~~~~---~v~~~Lv~~G~A~~~~~~~~~--~~~~~~l~~ae~~ 118 (129)
T cd00175 44 FGEEAKEFLKKLLLGKKVQVEVDSKDRYGRTLGTVYLNGGE---NIAEELVKEGLARVYRYYPDD--SEYYDELLEAEEA 118 (129)
T ss_pred hHHHHHHHHHHHhCCCEEEEEEccCCCCCCEEEEEEeCCCC---cHHHHHHhcCCEEEEEECCCC--cHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999997645 499999999999999876654 2345699999999
Q ss_pred HHHhccccccC
Q 001739 353 AKKTRLRMWTN 363 (1019)
Q Consensus 353 Ak~~r~g~W~~ 363 (1019)
||++|+|||++
T Consensus 119 Ak~~k~GiW~~ 129 (129)
T cd00175 119 AKKARKGLWSD 129 (129)
T ss_pred HHHhCcCCCCC
Confidence 99999999974
No 8
>PF00567 TUDOR: Tudor domain; InterPro: IPR008191 There are multiple copies of this domain in the Drosophila melanogaster tudor protein and it has been identified in several RNA-binding proteins []. Although the function of this domain is unknown, in Drosophila melanogaster the tudor protein is required during oogenesis for the formation of primordial germ cells and for normal abdominal segmentation [].; PDB: 3NTI_A 3NTK_B 3NTH_A 2DIQ_A 3FDR_A 3PNW_O 3S6W_A 3PMT_A 2WAC_A 2O4X_A ....
Probab=99.83 E-value=4.1e-20 Score=177.55 Aligned_cols=119 Identities=33% Similarity=0.521 Sum_probs=98.4
Q ss_pred CccEEEEEEEEEecCCeEEEEEcC-chhHHHHHHHHHHHHccCCCCCCCCCCcCCCeEEEEEcCCCcEEEEEEEeecccc
Q 001739 759 QKEVLKVVVTEILGGGKFYVQQVG-DQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPREK 837 (1019)
Q Consensus 759 ~~~~~~V~VT~V~sp~~FyvQ~~~-~~~l~~L~~~L~~~~~~~~~~~~~~~p~~G~lc~A~fs~D~~WYRA~V~~i~~~~ 837 (1019)
.++.+.|+||+|.+|++||++... ...+++|+++|+.++..... .....+.+|..|++.+..|+.||||+|....
T Consensus 2 ~~~~~~v~It~v~~~~~~~v~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~w~Ra~I~~~~--- 77 (121)
T PF00567_consen 2 VGKTFEVYITHVDSPGEFYVQPDSADKAYEKLQEELQDYYENNPK-SPSPESNPGEGCLCVVSEDGRWYRAVITVDI--- 77 (121)
T ss_dssp ---EEEEEEEEECTTSEEEEEECCCHHHHHHHHHHHHHHHHHS-C-TTCST--TTEEEEEEETTTSEEEEEEEEEEE---
T ss_pred CCCEEEEEEEEEecCCEEEEEEcCCHHHHHHHHHHHHHHHhcccc-cCccccccCCEEEEEEecCCceeeEEEEEec---
Confidence 367899999999999999998777 47899999999999976544 2245678999999999999999999993322
Q ss_pred cccCCCEEEEEEEecCCceeecCCCcccCCccccCCCCceEEEEecc
Q 001739 838 VESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAY 884 (1019)
Q Consensus 838 ~~~~~~~v~V~fVDYGn~e~V~~~~Lr~Lp~~f~~lP~qAi~C~Lag 884 (1019)
.++.+.|+|||||+++.|+.++||+||++|..+|+||++|+|+|
T Consensus 78 ---~~~~~~V~~iD~G~~~~v~~~~l~~l~~~~~~~P~~a~~~~L~g 121 (121)
T PF00567_consen 78 ---DENQYKVFLIDYGNTEKVSASDLRPLPPEFASLPPQAIKCKLAG 121 (121)
T ss_dssp ---CTTEEEEEETTTTEEEEEEGGGEEE--HHHCSSSSSCEEEEET-
T ss_pred ---ccceeEEEEEecCceEEEcHHHhhhhCHHHhhCChhhEEEEEcC
Confidence 78999999999999999999999999999999999999999987
No 9
>COG1525 Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair]
Probab=99.78 E-value=1.3e-18 Score=182.73 Aligned_cols=127 Identities=30% Similarity=0.457 Sum_probs=111.9
Q ss_pred EEEEEeEeccCCeEEEeeCCCCCCCCCCceEEEEEeccCCCCCCC--CCCCChhHHHHHHHHHHHcCc-e-EEEEEeeee
Q 001739 12 YRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARR--GGLDEPFAWDSREFLRKLCIG-K-VTFRVDYAV 87 (1019)
Q Consensus 12 ~~g~V~~V~sGDTi~v~~~~~~~~g~~~~~~vrL~~IdaPe~~~~--~~~~ep~a~eAre~Lr~~liG-k-V~~~~~~~~ 87 (1019)
..+.|.+|.|||||.+.... + +..+|||.||||||..+. ++..+|||.+|++||++++.+ + |.|......
T Consensus 42 ~~~~v~~v~dGDT~~v~~~~----~--~~~~iRl~gIdaPe~~~~~~~~~~~~~G~~A~~~l~~~l~~~~~v~~~~~~~~ 115 (192)
T COG1525 42 PDSTVVRVIDGDTLKVRGEG----G--QAVKIRLAGIDAPETKQTCAGGKSQPCGEEAREFLRNLLLGRRTVECDLADRK 115 (192)
T ss_pred CCCceEEecCCCeEEEecCC----C--ceeEEEEeccCCCcccccCCcccccchHHHHHHHHHHHhcCCceEEEecCCcc
Confidence 34789999999999999872 2 478999999999999865 456899999999999999997 7 999976535
Q ss_pred CCCCcEEEEEEeCCcchHHHHHhcCCEEEEEecCcCCCCchHHHHHHHHHHHHHHhCCCCCCCC
Q 001739 88 PNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKV 151 (1019)
Q Consensus 88 ~~~gR~~g~v~~~g~~v~~~lv~~G~A~~~~~~~~~~~~~~~~~~l~~ae~~Ak~~~~GiWs~~ 151 (1019)
++|||.+|.||.+|.|||++||++|||+++.. ..++.+|.++|+.||.+++|||+..
T Consensus 116 d~y~R~la~v~~~~~~v~~~lV~~G~A~~~~~-------~~~~~~~~~ae~~Ar~~~~GiW~~~ 172 (192)
T COG1525 116 DRYGRLLAYVTVDGTDVNLELVKEGLARVYYN-------SEYGGEYAEAEEEARKRRLGIWSDD 172 (192)
T ss_pred cCCCcEEEEEEECCEEHHHHHHhCCCEEEecc-------ccchHHHHHHHHHHHHcccCccCCC
Confidence 78999999999999999999999999999882 2466789999999999999999986
No 10
>PF00565 SNase: Staphylococcal nuclease homologue; InterPro: IPR006021 Staphylococcus aureus nuclease (SNase) homologues, previously thought to be restricted to bacteria and archaea, are also in eukaryotes. Staphylococcal nuclease has multidomain organisation []. The human cellular coactivator p100 contains four repeats, each of which is a SNase homologue. These repeats are unlikely to possess SNase-like activities as each lacks equivalent SNase catalytic residues, yet they may mediate p100's single-stranded DNA-binding function []. alA variety of proteins including many that are still uncharacterised belong to this group.; GO: 0003676 nucleic acid binding, 0016788 hydrolase activity, acting on ester bonds; PDB: 2PZT_A 2KQ3_A 2PZU_A 2PW5_A 2KHS_B 3QON_A 3QOJ_A 2OXP_A 3QOL_A 2PYK_A ....
Probab=99.77 E-value=8.7e-19 Score=166.12 Aligned_cols=106 Identities=29% Similarity=0.496 Sum_probs=92.9
Q ss_pred EEEEEeccCCCCCCCCCCCChhHHHHHHHHHHHcCce-EEEEEeee-eCCCCcEEEEEEeCCcchHHHHHhcCCEEEEEe
Q 001739 42 TLTLSSIITPRLARRGGLDEPFAWDSREFLRKLCIGK-VTFRVDYA-VPNIGREFGTVILGDKNVAMLVVSEGWAKVKEQ 119 (1019)
Q Consensus 42 ~vrL~~IdaPe~~~~~~~~ep~a~eAre~Lr~~liGk-V~~~~~~~-~~~~gR~~g~v~~~g~~v~~~lv~~G~A~~~~~ 119 (1019)
+|||+|||||+..+.+...+|||.+|++||++++.++ |.+.+... .+.+||.+|+|++++.+||++||++|||.++..
T Consensus 1 ~vrL~gI~~Pe~~~~~~~~~~~~~~A~~~l~~~l~~~~~~~~~~~~~~d~~gr~~~~v~~~~~~in~~Ll~~GlA~v~~~ 80 (108)
T PF00565_consen 1 KVRLAGIDAPETNQPDKPEEPYGQEAKEFLRELLLGRQVVVEVDDIKQDKYGRLLAYVYVDGEDINEELLEEGLARVYRR 80 (108)
T ss_dssp EEEETTEE-SSSTCCCTTTSTTHHHHHHHHHHHHHTCSCEEEEEESSBSTTSCEEEEEEETTEEHHHHHHHTTSSEE-CG
T ss_pred CEEEEEEECCCCCCCCCccchHHHHHHHHHHHHhCCCeeeecccccCCCCCCceeEEEEEechhhhHHHHhCCeEEEEEe
Confidence 6999999999999887789999999999999999999 88887765 577899999999999999999999999999885
Q ss_pred cCcCCCCchHHHHHHHHHHHHHHhCCCCCCC
Q 001739 120 GSQKGEASPFLAELLRLEEQAKLQGLGRWSK 150 (1019)
Q Consensus 120 ~~~~~~~~~~~~~l~~ae~~Ak~~~~GiWs~ 150 (1019)
.. ....++..|..||++||++++|||+.
T Consensus 81 ~~---~~~~~~~~~~~ae~~A~~~k~GiW~~ 108 (108)
T PF00565_consen 81 YP---SNSEYYASLLQAEEEARKAKKGIWSE 108 (108)
T ss_dssp BT---TBCTTHHHHHHHHHHHHHTT-GGGCT
T ss_pred cC---CCcHHHHHHHHHHHHHHHhCcCCCCC
Confidence 52 24678899999999999999999984
No 11
>PRK06518 hypothetical protein; Provisional
Probab=99.76 E-value=1.1e-17 Score=171.39 Aligned_cols=136 Identities=15% Similarity=0.126 Sum_probs=108.8
Q ss_pred cCCCCccEEEEEEccCCEEEEEEcC--CceEEEEEEeeecCCCCCCCCCccccCcccccCCCccccccccchhhHHHHhh
Q 001739 182 NKGRPMQGIVEQARDGSTLRVYLLP--EFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAA 259 (1019)
Q Consensus 182 ~~~~~~~~~Ve~V~dG~t~rv~~~~--~~~~~~v~l~Gi~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (1019)
+....+.|.| .|+|||||+|.... .+...+|||+|||+||..... . .
T Consensus 19 ~~~~~~~G~v-~V~DGDTl~l~~~~~~~~~~~~VRL~GIDAPE~~Q~c---------~-~-------------------- 67 (177)
T PRK06518 19 NNVVIFHGRA-QVTSGVTFKLIADGWRKEITRDIRLYGVDTCAPRQKA---------R-L-------------------- 67 (177)
T ss_pred cccccccceE-EEEcCCEEEEeeccccCCCCeEEEEEEEcCCCCCCcc---------c-C--------------------
Confidence 4667788988 79999999995211 123569999999999975421 0 0
Q ss_pred hcccCCCCCCCchhHHHHHHHHHHHccCCEEEEEEeeecCCCCEEEEEEeCCCCChhHHHHHHHhcCcEEEEecccccch
Q 001739 260 STASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMME 339 (1019)
Q Consensus 260 ~~~~~~~~~~~epf~~eAk~f~~~~ll~r~V~i~~~~~d~~g~~~~~V~~~~g~~~~di~~~Ll~~Gla~~~~~~~~~~~ 339 (1019)
..+.+|||.+|+.|+..+++++.|++...+ |+|||++|+++.. |. ||+++||++|||+.+....+..
T Consensus 68 -------~~~~wp~G~~A~~~L~~li~gk~V~~~~~~-D~ygR~lA~~~~~-g~---dln~~mV~~G~A~ay~~~~~~~- 134 (177)
T PRK06518 68 -------GDQEWPCGAVATAWLVTKTLNKWLSCRQAR-MENGVHYAQCFVD-GV---DIAALGLAEGMAVLSKDDHEDP- 134 (177)
T ss_pred -------CCCCCcHHHHHHHHHHHHHCCCeEEEEEec-ccCCCEEEEEEEC-CE---EHHHHHHhCCCEEEEeeccCCC-
Confidence 125799999999999999999999999877 9999999999984 43 6999999999999986433321
Q ss_pred HHHHHHHHHHHHHHHHhccccccC
Q 001739 340 EDAKRRLKAADLQAKKTRLRMWTN 363 (1019)
Q Consensus 340 ~~~~~~l~~ae~~Ak~~r~g~W~~ 363 (1019)
....|..+|++||++|+|||+.
T Consensus 135 --~~~~y~~aE~~AR~~k~GLW~~ 156 (177)
T PRK06518 135 --GPAQYASLEEKARKAYRGLWSS 156 (177)
T ss_pred --CHHHHHHHHHHHHHhCCCCCCC
Confidence 1237999999999999999985
No 12
>PF00565 SNase: Staphylococcal nuclease homologue; InterPro: IPR006021 Staphylococcus aureus nuclease (SNase) homologues, previously thought to be restricted to bacteria and archaea, are also in eukaryotes. Staphylococcal nuclease has multidomain organisation []. The human cellular coactivator p100 contains four repeats, each of which is a SNase homologue. These repeats are unlikely to possess SNase-like activities as each lacks equivalent SNase catalytic residues, yet they may mediate p100's single-stranded DNA-binding function []. alA variety of proteins including many that are still uncharacterised belong to this group.; GO: 0003676 nucleic acid binding, 0016788 hydrolase activity, acting on ester bonds; PDB: 2PZT_A 2KQ3_A 2PZU_A 2PW5_A 2KHS_B 3QON_A 3QOJ_A 2OXP_A 3QOL_A 2PYK_A ....
Probab=99.73 E-value=1.6e-17 Score=157.51 Aligned_cols=106 Identities=30% Similarity=0.530 Sum_probs=87.9
Q ss_pred EEEEeeecCCCCCCCCCccccCcccccCCCccccccccchhhHHHHhhhcccCCCCCCCchhHHHHHHHHHHHccCCEEE
Q 001739 212 QVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVR 291 (1019)
Q Consensus 212 ~v~l~Gi~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~epf~~eAk~f~~~~ll~r~V~ 291 (1019)
+|||+||+||++.... ...+||+.+|+.|++..|++++|.
T Consensus 1 ~vrL~gI~~Pe~~~~~----------------------------------------~~~~~~~~~A~~~l~~~l~~~~~~ 40 (108)
T PF00565_consen 1 KVRLAGIDAPETNQPD----------------------------------------KPEEPYGQEAKEFLRELLLGRQVV 40 (108)
T ss_dssp EEEETTEE-SSSTCCC----------------------------------------TTTSTTHHHHHHHHHHHHHTCSCE
T ss_pred CEEEEEEECCCCCCCC----------------------------------------CccchHHHHHHHHHHHHhCCCeee
Confidence 6899999999986532 357999999999999999999999
Q ss_pred EEEeee--cCCCCEEEEEEeCCCCChhHHHHHHHhcCcEEEEecccccchHHHHHHHHHHHHHHHHhccccccC
Q 001739 292 IVLEGV--DKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTN 363 (1019)
Q Consensus 292 i~~~~~--d~~g~~~~~V~~~~g~~~~di~~~Ll~~Gla~~~~~~~~~~~~~~~~~l~~ae~~Ak~~r~g~W~~ 363 (1019)
+.+.+. |++||++|+|+++ +. ||+++||++|||+++....... .....|.+||++||++|+|||++
T Consensus 41 ~~~~~~~~d~~gr~~~~v~~~-~~---~in~~Ll~~GlA~v~~~~~~~~--~~~~~~~~ae~~A~~~k~GiW~~ 108 (108)
T PF00565_consen 41 VEVDDIKQDKYGRLLAYVYVD-GE---DINEELLEEGLARVYRRYPSNS--EYYASLLQAEEEARKAKKGIWSE 108 (108)
T ss_dssp EEEEESSBSTTSCEEEEEEET-TE---EHHHHHHHTTSSEE-CGBTTBC--TTHHHHHHHHHHHHHTT-GGGCT
T ss_pred ecccccCCCCCCceeEEEEEe-ch---hhhHHHHhCCeEEEEEecCCCc--HHHHHHHHHHHHHHHhCcCCCCC
Confidence 999877 9999999999998 44 5999999999999997443221 23358999999999999999985
No 13
>COG1525 Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair]
Probab=99.65 E-value=1.1e-15 Score=160.62 Aligned_cols=129 Identities=30% Similarity=0.418 Sum_probs=108.6
Q ss_pred ccEEEEEEccCCEEEEEEcCCceEEEEEEeeecCCCCCCCCCccccCcccccCCCccccccccchhhHHHHhhhcccCCC
Q 001739 187 MQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTASAGQ 266 (1019)
Q Consensus 187 ~~~~Ve~V~dG~t~rv~~~~~~~~~~v~l~Gi~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (1019)
..+.|.+|.|||||.+...+ .+.++|||+|||+||..... .
T Consensus 42 ~~~~v~~v~dGDT~~v~~~~-~~~~~iRl~gIdaPe~~~~~-----------~--------------------------- 82 (192)
T COG1525 42 PDSTVVRVIDGDTLKVRGEG-GQAVKIRLAGIDAPETKQTC-----------A--------------------------- 82 (192)
T ss_pred CCCceEEecCCCeEEEecCC-CceeEEEEeccCCCcccccC-----------C---------------------------
Confidence 56889999999999998653 57789999999999986421 0
Q ss_pred CCCCchhHHHHHHHHHHHccC-CEEEEEEee-ecCCCCEEEEEEeCCCCChhHHHHHHHhcCcEEEEecccccchHHHHH
Q 001739 267 QSTDEPFALDAKYFTEMRVLN-REVRIVLEG-VDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKR 344 (1019)
Q Consensus 267 ~~~~epf~~eAk~f~~~~ll~-r~V~i~~~~-~d~~g~~~~~V~~~~g~~~~di~~~Ll~~Gla~~~~~~~~~~~~~~~~ 344 (1019)
....+||+.+|+.|++..|+. +.|++.+.. .|+|||++|+|+ .+|. |++.+||++|||+++. +. ....
T Consensus 83 ~~~~~~~G~~A~~~l~~~l~~~~~v~~~~~~~~d~y~R~la~v~-~~~~---~v~~~lV~~G~A~~~~---~~---~~~~ 152 (192)
T COG1525 83 GGKSQPCGEEAREFLRNLLLGRRTVECDLADRKDRYGRLLAYVT-VDGT---DVNLELVKEGLARVYY---NS---EYGG 152 (192)
T ss_pred cccccchHHHHHHHHHHHhcCCceEEEecCCcccCCCcEEEEEE-ECCE---EHHHHHHhCCCEEEec---cc---cchH
Confidence 135799999999999999996 888888888 999999999999 3454 5999999999999997 11 1224
Q ss_pred HHHHHHHHHHHhccccccCC
Q 001739 345 RLKAADLQAKKTRLRMWTNY 364 (1019)
Q Consensus 345 ~l~~ae~~Ak~~r~g~W~~~ 364 (1019)
.|.+||+.|++.++|||+..
T Consensus 153 ~~~~ae~~Ar~~~~GiW~~~ 172 (192)
T COG1525 153 EYAEAEEEARKRRLGIWSDD 172 (192)
T ss_pred HHHHHHHHHHHcccCccCCC
Confidence 89999999999999999985
No 14
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=99.27 E-value=7.4e-12 Score=105.08 Aligned_cols=56 Identities=43% Similarity=0.785 Sum_probs=51.2
Q ss_pred CCcCCCeEEEEEcCCCcEEEEEEEeecccccccCCCEEEEEEEecCCceeecCCCcccCCccc
Q 001739 808 NPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSL 870 (1019)
Q Consensus 808 ~p~~G~lc~A~fs~D~~WYRA~V~~i~~~~~~~~~~~v~V~fVDYGn~e~V~~~~Lr~Lp~~f 870 (1019)
.+++|++|+|+| .|+.||||+|+++. +.+.+.|+|+|||+.+.|+.++||+||+.+
T Consensus 2 ~~~~G~~~~a~~-~d~~wyra~I~~~~------~~~~~~V~f~D~G~~~~v~~~~l~~l~~~~ 57 (57)
T smart00333 2 TFKVGDKVAARW-EDGEWYRARIIKVD------GEQLYEVFFIDYGNEEVVPPSDLRPLPEEL 57 (57)
T ss_pred CCCCCCEEEEEe-CCCCEEEEEEEEEC------CCCEEEEEEECCCccEEEeHHHeecCCCCC
Confidence 478999999999 89999999999995 338999999999999999999999998753
No 15
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=99.25 E-value=7.6e-12 Score=101.22 Aligned_cols=48 Identities=48% Similarity=0.946 Sum_probs=44.3
Q ss_pred CCeEEEEEcCCCcEEEEEEEeecccccccCCCEEEEEEEecCCceeecCCCccc
Q 001739 812 GEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRP 865 (1019)
Q Consensus 812 G~lc~A~fs~D~~WYRA~V~~i~~~~~~~~~~~v~V~fVDYGn~e~V~~~~Lr~ 865 (1019)
|++|+|+|++|+.||||+|+++. .+..+.|+|+||||.+.|+.++||+
T Consensus 1 G~~c~a~~~~d~~wyra~V~~~~------~~~~~~V~f~DyG~~~~v~~~~l~~ 48 (48)
T cd04508 1 GDLCLAKYSDDGKWYRAKITSIL------SDGKVEVFFVDYGNTEVVPLSDLRP 48 (48)
T ss_pred CCEEEEEECCCCeEEEEEEEEEC------CCCcEEEEEEcCCCcEEEeHHHcCC
Confidence 78999999989999999999995 4789999999999999999998874
No 16
>KOG2279 consensus Kinase anchor protein AKAP149, contains KH and Tudor RNA-binding domains [Signal transduction mechanisms]
Probab=98.94 E-value=9e-10 Score=125.81 Aligned_cols=189 Identities=16% Similarity=0.101 Sum_probs=143.2
Q ss_pred CCCccEEEEEEEEEecCCeEEEEEcCc---hhHHHHHHHHHHHHccCCCCCC-CCCCcCCCeEEEEEcCCCcEEEEEEEe
Q 001739 757 GKQKEVLKVVVTEILGGGKFYVQQVGD---QKVASVQQQLASLNLQEAPVIG-AFNPKKGEIVLAQFSADNSWNRAMIVN 832 (1019)
Q Consensus 757 ~~~~~~~~V~VT~V~sp~~FyvQ~~~~---~~l~~L~~~L~~~~~~~~~~~~-~~~p~~G~lc~A~fs~D~~WYRA~V~~ 832 (1019)
++.+..+.|.|..+++.++||+|.... ..|..|-..|..+|......+. +..+..+-+|+|.- .++.|.||.++.
T Consensus 401 fpd~i~cev~V~s~i~a~hlf~pq~tip~F~aLrsldqwm~l~y~eq~t~pelP~P~~~t~~sAAp~-g~~awpra~lvd 479 (608)
T KOG2279|consen 401 FPDNIDCEVKVLSAIRADHLFLPQQTIPCFLALRSLDQWMELAYDEQLTHPELPKPLVATISSAAPT-GISAWPRAYLVD 479 (608)
T ss_pred cCCCceEEeeeehhhcccceeeccccchhhhhhhhHHHHHHHHhhcccCCcCCCcchhhceeeeccc-CCCCccceEEEe
Confidence 455778999999999999999999875 4566677778777763221111 23356678888874 678999999999
Q ss_pred ecccccccCCCE-EEEEEEecCCceeecCCCcccCCccccCCCCceEEEEecceecCCCCCCCcHHHHHHHhhccccCCC
Q 001739 833 APREKVESVNDK-FEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSN 911 (1019)
Q Consensus 833 i~~~~~~~~~~~-v~V~fVDYGn~e~V~~~~Lr~Lp~~f~~lP~qAi~C~LagV~p~~~~~~Ws~eA~~~f~~lllv~~k 911 (1019)
-.. +.+. +.+.||||| ...+...+||++-..|.+||+|+-+..|+.|.|......|+++|...|+. ++.++
T Consensus 480 ~~d-----et~l~I~~~~VdyG-Y~~~~~ddlrqiRsd~~slPfq~tEv~l~~v~pl~~t~~~Spea~h~~s~--Msi~~ 551 (608)
T KOG2279|consen 480 TSD-----ETKLDIGLELVDYG-YAIELPDDLRQIRSDPDSLPFQATEVDLSLVTPLTETKKSSPEATHTLSC--MSISE 551 (608)
T ss_pred ccC-----cccchhhheeeccc-ccccchhhhhhhhcccccCCcccchhhHhheeccCCCcCcCcccccchhh--hhhhh
Confidence 752 3444 899999999 88999999999999999999999999999999998888999999999999 55555
Q ss_pred EEEEEEEEEeCCCCcccCCCCcceEEEEEEecC------CCCcHHHHHHHcCCeeeec
Q 001739 912 EFRALVEERDSSGGKLKGQGTGTLLHVTLVAVD------AEISINTLMVQEGLARVER 963 (1019)
Q Consensus 912 ~l~a~V~~~~~~g~~i~~~~~~~~~~V~L~d~~------~~~sIn~~LV~~GlA~~~~ 963 (1019)
...+.-+....+ ....++.||... +..-+++.|++.|+|....
T Consensus 552 ~a~~~~v~~~~d---------t~Lp~~ql~s~~~D~k~~n~vk~~q~l~ecGla~~ad 600 (608)
T KOG2279|consen 552 AASMSGVDNLED---------TYLPGSQLFSLLSDLKCCNSVKHAQPLNECGLASVAD 600 (608)
T ss_pred hhhhhccccccc---------ccchhhhhhhhhccccccchhhhhhhhhhcccccccc
Confidence 444443332221 124455665432 2456889999999998764
No 17
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=98.43 E-value=4e-07 Score=77.60 Aligned_cols=56 Identities=29% Similarity=0.410 Sum_probs=51.0
Q ss_pred CCcCCCeEEEEEcCCCcEEEEEEEeecccccccCCCEEEEEEEe--cCCceeecCCCcccCCcc
Q 001739 808 NPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYID--YGNQELVPYNKLRPIDPS 869 (1019)
Q Consensus 808 ~p~~G~lc~A~fs~D~~WYRA~V~~i~~~~~~~~~~~v~V~fVD--YGn~e~V~~~~Lr~Lp~~ 869 (1019)
..++|+.|-|.|++++.||||+|+++. .++++.|+|.| +|+.+.++.++||++|+.
T Consensus 2 ~~~~G~~Ve~~~~~~~~W~~a~V~~~~------~~~~~~V~~~~~~~~~~e~v~~~~LRp~~~w 59 (61)
T smart00743 2 DFKKGDRVEVFSKEEDSWWEAVVTKVL------GDGKYLVRYLTESEPLKETVDWSDLRPHPPW 59 (61)
T ss_pred CcCCCCEEEEEECCCCEEEEEEEEEEC------CCCEEEEEECCCCcccEEEEeHHHcccCCCC
Confidence 367999999999999999999999995 46889999999 999999999999999863
No 18
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=98.06 E-value=4.2e-06 Score=92.12 Aligned_cols=58 Identities=26% Similarity=0.390 Sum_probs=47.7
Q ss_pred CCCcCCCeEEEEEcCCCcEEEEEEEeecccccccCCCEEEEEEEecCCceeecCCCcccCCcc
Q 001739 807 FNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPS 869 (1019)
Q Consensus 807 ~~p~~G~lc~A~fs~D~~WYRA~V~~i~~~~~~~~~~~v~V~fVDYGn~e~V~~~~Lr~Lp~~ 869 (1019)
...++|+.|.|.|++|++||-|.|..|.. ..+++.|.|.+|||.+.|.+++|++....
T Consensus 67 ~~WkvGd~C~A~~s~Dg~~Y~A~I~~i~~-----~~~~~~V~f~gYgn~e~v~l~dL~~~~~~ 124 (264)
T PF06003_consen 67 KKWKVGDKCMAVYSEDGQYYPATIESIDE-----EDGTCVVVFTGYGNEEEVNLSDLKPSEGD 124 (264)
T ss_dssp T---TT-EEEEE-TTTSSEEEEEEEEEET-----TTTEEEEEETTTTEEEEEEGGGEEETT--
T ss_pred cCCCCCCEEEEEECCCCCEEEEEEEEEcC-----CCCEEEEEEcccCCeEeeehhhhcccccc
Confidence 56999999999999999999999999963 56799999999999999999999999765
No 19
>KOG2279 consensus Kinase anchor protein AKAP149, contains KH and Tudor RNA-binding domains [Signal transduction mechanisms]
Probab=96.56 E-value=0.00069 Score=78.68 Aligned_cols=186 Identities=16% Similarity=0.155 Sum_probs=131.0
Q ss_pred CCccEEEEEEEEEecCCeEEEEEcCc--hhHHHHHHHHHHHHccCCCCCCCCCCcCCCeEEEEEcCCCcEEEEEEEeecc
Q 001739 758 KQKEVLKVVVTEILGGGKFYVQQVGD--QKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPR 835 (1019)
Q Consensus 758 ~~~~~~~V~VT~V~sp~~FyvQ~~~~--~~l~~L~~~L~~~~~~~~~~~~~~~p~~G~lc~A~fs~D~~WYRA~V~~i~~ 835 (1019)
..++++.++.+.-..+.+||.|...+ -.++.+..+...++.+.... ......++..++...-.+-||++.+....
T Consensus 313 ~~gey~s~yssasn~~~hi~t~pyt~~v~~~qic~~egkqh~~n~vl~--ml~~~~p~~~f~eLnl~~~~~p~lps~al- 389 (608)
T KOG2279|consen 313 HAGEYLSVYSSASNHPNHIWTQPYTSRVLQLQICVNEGKQHYENSVLE--MLTVHVPDIVFAELNLNGSWYPALPSGAL- 389 (608)
T ss_pred hhhhhhhhhhhccCccceEEeccccchhhhhhhheecchhHHHHHHHh--hhhccCCccccccccccCccCcccCcccc-
Confidence 35778888888888899999999875 33455666666666553322 12233445555554457889999988765
Q ss_pred cccccCCCEEEEEEEecCCceeecCCCcccCCccccCCCCceEEEEecceecCCCCCCCcHHHHHHHhhccccCCCEEEE
Q 001739 836 EKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFRA 915 (1019)
Q Consensus 836 ~~~~~~~~~v~V~fVDYGn~e~V~~~~Lr~Lp~~f~~lP~qAi~C~LagV~p~~~~~~Ws~eA~~~f~~lllv~~k~l~a 915 (1019)
..-....+++||+....+....++.|...++.+|.+++.|.++ +. .-..|...+..---.+ -..-+.|.+
T Consensus 390 -----~~L~td~~wL~fpd~i~cev~V~s~i~a~hlf~pq~tip~F~a-Lr---sldqwm~l~y~eq~t~-pelP~P~~~ 459 (608)
T KOG2279|consen 390 -----ENLNTDLYWLDFPDNIDCEVKVLSAIRADHLFLPQQTIPCFLA-LR---SLDQWMELAYDEQLTH-PELPKPLVA 459 (608)
T ss_pred -----cccCCcceEEEcCCCceEEeeeehhhcccceeeccccchhhhh-hh---hHHHHHHHHhhcccCC-cCCCcchhh
Confidence 4566778999999999999999999999999999999999998 22 2356776665521110 122366777
Q ss_pred EEEEEeCCCCcccCCCCcceEEEEEEecC--CCCcHHHHHHHcCCeeeec
Q 001739 916 LVEERDSSGGKLKGQGTGTLLHVTLVAVD--AEISINTLMVQEGLARVER 963 (1019)
Q Consensus 916 ~V~~~~~~g~~i~~~~~~~~~~V~L~d~~--~~~sIn~~LV~~GlA~~~~ 963 (1019)
++...-+.|. +....+.|+++. .+.+|...||..||++...
T Consensus 460 t~~sAAp~g~-------~awpra~lvd~~det~l~I~~~~VdyGY~~~~~ 502 (608)
T KOG2279|consen 460 TISSAAPTGI-------SAWPRAYLVDTSDETKLDIGLELVDYGYAIELP 502 (608)
T ss_pred ceeeecccCC-------CCccceEEEeccCcccchhhheeecccccccch
Confidence 7777655432 245567777763 4677999999999887753
No 20
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=96.16 E-value=0.019 Score=47.42 Aligned_cols=52 Identities=17% Similarity=0.382 Sum_probs=40.8
Q ss_pred CCCcCCCeEEEEEcCCCcEEEEEEEeecccccccCCCEEEEEEEecCCceeecCCCcc
Q 001739 807 FNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLR 864 (1019)
Q Consensus 807 ~~p~~G~lc~A~fs~D~~WYRA~V~~i~~~~~~~~~~~v~V~fVDYGn~e~V~~~~Lr 864 (1019)
.....|+.+-+++..++.||.|+|++.+. ....+.|.|-| |....++.++|+
T Consensus 4 ~k~~~Ge~V~~rWP~s~lYYe~kV~~~d~-----~~~~y~V~Y~D-Gtel~lke~dik 55 (55)
T PF09465_consen 4 RKFAIGEVVMVRWPGSSLYYEGKVLSYDS-----KSDRYTVLYED-GTELELKENDIK 55 (55)
T ss_dssp SSS-SS-EEEEE-TTTS-EEEEEEEEEET-----TTTEEEEEETT-S-EEEEECCCEE
T ss_pred ccccCCCEEEEECCCCCcEEEEEEEEecc-----cCceEEEEEcC-CCEEEecccccC
Confidence 34678999999999999999999999863 78999999999 998888877763
No 21
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=94.46 E-value=0.071 Score=46.55 Aligned_cols=54 Identities=31% Similarity=0.505 Sum_probs=35.3
Q ss_pred cCCCeEEEEEcCC---CcEEEEEEEeecccccccCCCEEEEEEEecCC--------ceeecCCCcccCCcc
Q 001739 810 KKGEIVLAQFSAD---NSWNRAMIVNAPREKVESVNDKFEVFYIDYGN--------QELVPYNKLRPIDPS 869 (1019)
Q Consensus 810 ~~G~lc~A~fs~D---~~WYRA~V~~i~~~~~~~~~~~v~V~fVDYGn--------~e~V~~~~Lr~Lp~~ 869 (1019)
++|+.+=+...++ +.||+|.|++.. .+.++.|.|-|+-. .+.|+...|||.|+.
T Consensus 2 ~~G~~VEV~s~e~g~~gaWf~a~V~~~~------~~~~~~V~Y~~~~~~~~~~~~l~e~V~~~~iRP~pP~ 66 (68)
T PF05641_consen 2 KKGDEVEVSSDEDGFRGAWFPATVLKEN------GDDKYLVEYDDLPDEDGESPPLKEWVDARRIRPCPPP 66 (68)
T ss_dssp -TT-EEEEEE-SBTT--EEEEEEEEEEE------TT-EEEEEETT-SS--------EEEEEGGGEEE----
T ss_pred CCCCEEEEEEcCCCCCcEEEEEEEEEeC------CCcEEEEEECCcccccccccccEEEechheEECcCcC
Confidence 4677777776553 479999999985 33499999976653 578899999999874
No 22
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=91.73 E-value=0.36 Score=40.30 Aligned_cols=51 Identities=27% Similarity=0.582 Sum_probs=39.7
Q ss_pred cCCCeEEEEEcCCCcEEEEEEEeecccccccCCCEEEEEEEecCCc--eeecCCCcc
Q 001739 810 KKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQ--ELVPYNKLR 864 (1019)
Q Consensus 810 ~~G~lc~A~fs~D~~WYRA~V~~i~~~~~~~~~~~v~V~fVDYGn~--e~V~~~~Lr 864 (1019)
.+|+.|.|.+ .++.||.|+|+++.. ..+...+-|.|..+... +.|+.++|+
T Consensus 2 ~vG~~v~~~~-~~~~~y~A~I~~~r~---~~~~~~YyVHY~g~nkR~DeWV~~~~i~ 54 (55)
T PF11717_consen 2 EVGEKVLCKY-KDGQWYEAKILDIRE---KNGEPEYYVHYQGWNKRLDEWVPESRIR 54 (55)
T ss_dssp -TTEEEEEEE-TTTEEEEEEEEEEEE---CTTCEEEEEEETTSTGCC-EEEETTTEE
T ss_pred CcCCEEEEEE-CCCcEEEEEEEEEEe---cCCCEEEEEEcCCCCCCceeeecHHHcc
Confidence 5899999998 689999999999852 12335788999988765 678888775
No 23
>KOG4327 consensus mRNA splicing protein SMN (survival motor neuron) [RNA processing and modification]
Probab=91.36 E-value=0.13 Score=53.04 Aligned_cols=54 Identities=28% Similarity=0.293 Sum_probs=46.6
Q ss_pred CCCcCCCeEEEEEcCCCcEEEEEEEeecccccccCCCEEEEEEEecCCceeecCCCccc
Q 001739 807 FNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRP 865 (1019)
Q Consensus 807 ~~p~~G~lc~A~fs~D~~WYRA~V~~i~~~~~~~~~~~v~V~fVDYGn~e~V~~~~Lr~ 865 (1019)
...++|+.|.|.|.++++.|=|.|..+.- ..+...|.|+=|||.+.|.+++|-+
T Consensus 66 ~~wKVgdkc~A~Y~e~g~~ypatidsi~~-----~~~tcvv~ylgygnr~Ev~lsDLl~ 119 (218)
T KOG4327|consen 66 QQWKVGDKCSAIYSEDGCIYPATIDSIDF-----KRETCVVVYLGYGNREEVNLSDLLS 119 (218)
T ss_pred hhheecceeeeeeecCcccccceeccccc-----ccCceEEEEEeecchhhhhHHHhcc
Confidence 56899999999999999999999998852 4566669999999999999888754
No 24
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=90.09 E-value=0.67 Score=45.49 Aligned_cols=105 Identities=18% Similarity=0.334 Sum_probs=71.2
Q ss_pred CccEEEEEEEEEecCCeEEEEEcCchhHHHHHHHHHHHHccCCCCCCCCCCcCCCeEEEEEcCCC-cEEEEEEEeecccc
Q 001739 759 QKEVLKVVVTEILGGGKFYVQQVGDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADN-SWNRAMIVNAPREK 837 (1019)
Q Consensus 759 ~~~~~~V~VT~V~sp~~FyvQ~~~~~~l~~L~~~L~~~~~~~~~~~~~~~p~~G~lc~A~fs~D~-~WYRA~V~~i~~~~ 837 (1019)
.|-++..+|....+.++|.|+..+...-......+-... ... ...+++||.|+|+...++ .|+-|+|+......
T Consensus 11 DG~YY~GtV~~~~~~~~~lV~f~~~~~~~v~~~~iI~~~----~~~-~~~L~~GD~VLA~~~~~~~~Y~Pg~V~~~~~~~ 85 (124)
T PF15057_consen 11 DGFYYPGTVKKCVSSGQFLVEFDDGDTQEVPISDIIALS----DAM-RHSLQVGDKVLAPWEPDDCRYGPGTVIAGPERR 85 (124)
T ss_pred CCcEEeEEEEEccCCCEEEEEECCCCEEEeChHHeEEcc----Ccc-cCcCCCCCEEEEecCcCCCEEeCEEEEECcccc
Confidence 366888889888899999999954311011111111111 111 245899999999975443 58889999742111
Q ss_pred cccCCCEEEEEEEecCCceeecCCCcccCCccc
Q 001739 838 VESVNDKFEVFYIDYGNQELVPYNKLRPIDPSL 870 (1019)
Q Consensus 838 ~~~~~~~v~V~fVDYGn~e~V~~~~Lr~Lp~~f 870 (1019)
...+..+.|.|.| |....|+...++.||+.+
T Consensus 86 -~~~~~~~~V~f~n-g~~~~vp~~~~~~I~~~~ 116 (124)
T PF15057_consen 86 -ASEDKEYTVRFYN-GKTAKVPRGEVIWISPSY 116 (124)
T ss_pred -ccCCceEEEEEEC-CCCCccchhhEEECCHHH
Confidence 1268899999999 778999999999998753
No 25
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=89.34 E-value=0.9 Score=44.62 Aligned_cols=51 Identities=22% Similarity=0.363 Sum_probs=44.5
Q ss_pred CCeEEEEEcCCCcEEEEEEEeecccccccCCCEEEEEEEecCCceeecCCCcccCCcc
Q 001739 812 GEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPS 869 (1019)
Q Consensus 812 G~lc~A~fs~D~~WYRA~V~~i~~~~~~~~~~~v~V~fVDYGn~e~V~~~~Lr~Lp~~ 869 (1019)
|+-++|+...||.||||.|.+.. ....+.|.| |.|....|+..++-++...
T Consensus 1 g~~VlAR~~~DG~YY~GtV~~~~------~~~~~lV~f-~~~~~~~v~~~~iI~~~~~ 51 (124)
T PF15057_consen 1 GQKVLARREEDGFYYPGTVKKCV------SSGQFLVEF-DDGDTQEVPISDIIALSDA 51 (124)
T ss_pred CCeEEEeeCCCCcEEeEEEEEcc------CCCEEEEEE-CCCCEEEeChHHeEEccCc
Confidence 67899999999999999999985 678899999 8899999999888777653
No 26
>KOG3026 consensus Splicing factor SPF30 [RNA processing and modification]
Probab=88.78 E-value=0.57 Score=49.81 Aligned_cols=56 Identities=23% Similarity=0.304 Sum_probs=50.4
Q ss_pred CCcCCCeEEEEEcCCCcEEEEEEEeecccccccCCCEEEEEEEecCCceeecCCCcccCCc
Q 001739 808 NPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDP 868 (1019)
Q Consensus 808 ~p~~G~lc~A~fs~D~~WYRA~V~~i~~~~~~~~~~~v~V~fVDYGn~e~V~~~~Lr~Lp~ 868 (1019)
...+|+-|.|.|++|+.||=|.|..+.. ....+.|.|--||+....+..+||..+.
T Consensus 90 ~w~vg~K~~A~~~ddg~~y~AtIe~ita-----~~~~~ai~f~s~~~a~~t~~a~lr~~e~ 145 (262)
T KOG3026|consen 90 GWKVGDKVQAVFSDDGQIYDATIEHITA-----MEGTVAIIFASYGTAPSTYAARLRSPEE 145 (262)
T ss_pred ccccCCEEEEeecCCCceEEeehhhccC-----CCCceeEEEeeccccccccHhhccCcch
Confidence 6889999999999999999999999852 4689999999999999999999998764
No 27
>KOG3038 consensus Histone acetyltransferase SAGA associated factor SGF29 [General function prediction only]
Probab=83.60 E-value=3.8 Score=44.49 Aligned_cols=90 Identities=18% Similarity=0.286 Sum_probs=55.1
Q ss_pred CCccEEEEEEEEEecCCeEEEEEcCc--hhHHHHHH----HHHHHHccCCCCCCCCCCcCCCeEEEEEcCCCcEEEEEEE
Q 001739 758 KQKEVLKVVVTEILGGGKFYVQQVGD--QKVASVQQ----QLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIV 831 (1019)
Q Consensus 758 ~~~~~~~V~VT~V~sp~~FyvQ~~~~--~~l~~L~~----~L~~~~~~~~~~~~~~~p~~G~lc~A~fs~D~~WYRA~V~ 831 (1019)
..++++.+.|.++.+.+..=|...+. .+++.+.. .|...+....|. ......+|..++|.|.+--+||||.|.
T Consensus 143 ~dg~WIlaeVv~~~~~~~ye~ev~D~Epk~d~~g~r~~~yklp~~~~~p~p~-p~~~fpp~~~VLA~YP~TTcFY~aiVh 221 (264)
T KOG3038|consen 143 EDGDWILAEVVKVSSETRYEFEVVDPEPKKDEVGNRGQLYKLPRWKLNPIPP-PTALFPPGTIVLAVYPGTTCFYKAIVH 221 (264)
T ss_pred CCCCEEEEEEEEEecCCceEeEecCCCccccccccccceecccHhhcCCCCC-CccCCCCCCEEEEEcCCcceeeeeEee
Confidence 34668888888888777533444332 11221111 112222221111 234567899999999999999999999
Q ss_pred eecccccccCCCEEEEEEEec
Q 001739 832 NAPREKVESVNDKFEVFYIDY 852 (1019)
Q Consensus 832 ~i~~~~~~~~~~~v~V~fVDY 852 (1019)
+-.+ .....+.|+|.|=
T Consensus 222 ~tp~----d~s~~y~vlffD~ 238 (264)
T KOG3038|consen 222 STPR----DGSCDYYVLFFDD 238 (264)
T ss_pred cCCC----CCCCcceeeeecC
Confidence 9864 2456778888883
No 28
>PF07039 DUF1325: SGF29 tudor-like domain; InterPro: IPR010750 SAGA-associated factor 29 is involved in transcriptional regulation, probably through association with histone acetyltransferase (HAT) complexes like the TFTC-HAT or STAGA complexes. It also may be involved in MYC-mediated oncogenic transformation. It is a component of the ATAC complex, which is a complex with histone acetyltransferase activity on histones H3 and H4 []. This entry represents a domain found in yeast and human SAGA-associated factor 29 proteins that is related to the tudor domain. ; PDB: 3MP6_A 3MP1_A 3MP8_A 3MET_B 3ME9_A 3MEU_B 3MEA_A 3MEV_B 3LX7_A 3MEW_A.
Probab=63.49 E-value=12 Score=37.23 Aligned_cols=88 Identities=17% Similarity=0.307 Sum_probs=55.9
Q ss_pred CccEEEEEEEEEecCC-eEEEEEcCchhHHHHHHHHHHHHcc--C-CCC--------CCCCCCcCCCeEEEEEcCCCcEE
Q 001739 759 QKEVLKVVVTEILGGG-KFYVQQVGDQKVASVQQQLASLNLQ--E-APV--------IGAFNPKKGEIVLAQFSADNSWN 826 (1019)
Q Consensus 759 ~~~~~~V~VT~V~sp~-~FyvQ~~~~~~l~~L~~~L~~~~~~--~-~~~--------~~~~~p~~G~lc~A~fs~D~~WY 826 (1019)
.+.++.+.|..+.+-+ .+-|+..+... . .+.+... . .|+ .......+|..|+|.|.+--+||
T Consensus 16 ~~~WIla~Vv~~~~~~~rYeV~D~d~~~----~--~~~~~~~~~~iIPLP~~~~~~~~~~~~f~~g~~VLAlYP~TT~FY 89 (130)
T PF07039_consen 16 EEEWILAEVVKYNSDGNRYEVEDPDPEE----E--KKRYKLSRKQIIPLPKKAPPDTDPLAEFPKGTKVLALYPDTTCFY 89 (130)
T ss_dssp TCEEEEEEEEEEETTTTEEEEEETTTCT----T--TEEEEEEGGGEEEE-SB--TTT-GGGS--TT-EEEEE-TTSSEEE
T ss_pred CCCEEEEEEEEEeCCCCEEEEecCCCCC----C--CceEEeCHHHEEECCCccCCCCCchhhCCCCCEEEEECCCCceEE
Confidence 3678899898888766 88899887421 0 0011111 0 011 11234678999999999888999
Q ss_pred EEEEEeecccccccCCCEEEEEEEecCCce
Q 001739 827 RAMIVNAPREKVESVNDKFEVFYIDYGNQE 856 (1019)
Q Consensus 827 RA~V~~i~~~~~~~~~~~v~V~fVDYGn~e 856 (1019)
||.|..... .....+.+.|-|-....
T Consensus 90 ~A~V~~~p~----~~~~~y~l~Fedd~~~~ 115 (130)
T PF07039_consen 90 PATVVSPPK----KKSGEYKLKFEDDEDAD 115 (130)
T ss_dssp EEEEEEE-S----STTS-EEEEECTTTSTT
T ss_pred EEEEEeCCC----CCCCcEEEEEeCCCCcC
Confidence 999999842 25788999999988764
No 29
>cd05162 PWWP The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes. The function of the PWWP domain is still not known precisely; however, based on the fact that other regions of PWWP-domain proteins are responsible for nuclear localization and DNA-binding, is likely that the PWWP domain acts as a site for protein-protein binding interactions, influencing chromatin remodeling and thereby regulating transcriptional processes. Some PWWP-domain proteins have been linked to cancer or other diseases; some are known to function as growth factors.
Probab=53.18 E-value=22 Score=32.32 Aligned_cols=62 Identities=21% Similarity=0.442 Sum_probs=47.3
Q ss_pred cCCCeEEEEEcCCCcEEEEEEEeeccccc----ccCCCEEEEEEEecCCceeecCCCcccCCccccC
Q 001739 810 KKGEIVLAQFSADNSWNRAMIVNAPREKV----ESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSS 872 (1019)
Q Consensus 810 ~~G~lc~A~fs~D~~WYRA~V~~i~~~~~----~~~~~~v~V~fVDYGn~e~V~~~~Lr~Lp~~f~~ 872 (1019)
.+|++|-|+.. .--|.-|+|++...... ....+.+.|+|.+-.....|+.++|.++...+..
T Consensus 2 ~~GdlVwaK~~-g~pwWPa~V~~~~~~~~~~~~~~~~~~~~V~Ffg~~~~~wv~~~~l~pf~~~~~~ 67 (87)
T cd05162 2 RPGDLVWAKMK-GYPWWPALVVDPPKDSKKAKKKAKEGKVLVLFFGDKTFAWVGAERLKPFTEHKES 67 (87)
T ss_pred CCCCEEEEeCC-CCCCCCEEEccccccchhhhccCCCCEEEEEEeCCCcEEEeCccceeeccchHHh
Confidence 57999999984 45799999998752000 0124789999999777888999999999877654
No 30
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=49.82 E-value=27 Score=41.44 Aligned_cols=58 Identities=16% Similarity=0.334 Sum_probs=43.9
Q ss_pred CCCcCCCeEEEEEcCCCcEEEEEEEeecccc-cccCCCEEEEEEEecCCc--eeecCCCcc
Q 001739 807 FNPKKGEIVLAQFSADNSWNRAMIVNAPREK-VESVNDKFEVFYIDYGNQ--ELVPYNKLR 864 (1019)
Q Consensus 807 ~~p~~G~lc~A~fs~D~~WYRA~V~~i~~~~-~~~~~~~v~V~fVDYGn~--e~V~~~~Lr 864 (1019)
....+|+.|.|+...|+.||.|.|+++.... .......+-|+|+.|=.+ ++|+.++|.
T Consensus 52 ~~~~VGekVla~~~~Dg~~~~A~VI~~R~~~~~~~~~~~YYVHY~g~nrRlDEWV~~~rLd 112 (450)
T PLN00104 52 LPLEVGTRVMCRWRFDGKYHPVKVIERRRGGSGGPNDYEYYVHYTEFNRRLDEWVKLEQLD 112 (450)
T ss_pred ceeccCCEEEEEECCCCCEEEEEEEEEeccCCCCCCCceEEEEEecCCccHhhccCHhhcc
Confidence 3578999999999889999999999985311 011224688999988777 788888774
No 31
>smart00293 PWWP domain with conserved PWWP motif. conservation of Pro-Trp-Trp-Pro residues
Probab=44.10 E-value=42 Score=28.68 Aligned_cols=56 Identities=20% Similarity=0.435 Sum_probs=42.2
Q ss_pred cCCCeEEEEEcCCCcEEEEEEEeecccc-----cccCCCEEEEEEEecCCceeecCCCcccC
Q 001739 810 KKGEIVLAQFSADNSWNRAMIVNAPREK-----VESVNDKFEVFYIDYGNQELVPYNKLRPI 866 (1019)
Q Consensus 810 ~~G~lc~A~fs~D~~WYRA~V~~i~~~~-----~~~~~~~v~V~fVDYGn~e~V~~~~Lr~L 866 (1019)
++|+++.|+.. .--|.-|+|+...... .......+.|+|..=.....|+.++|.+|
T Consensus 2 ~~GdlVwaK~~-G~p~WPa~V~~~~~~~~~~~~~~~~~~~~~V~Ffg~~~~awv~~~~l~p~ 62 (63)
T smart00293 2 KPGDLVWAKMK-GFPWWPALVVSPKETPDNIRKRKRFENLYPVLFFGDKDTAWISSSKLFPL 62 (63)
T ss_pred CCCCEEEEECC-CCCCCCeEEcCcccCChhHhhccCCCCEEEEEEeCCCCEEEECccceeeC
Confidence 57999999974 4469999999864200 01135689999998888888999999876
No 32
>PF09038 53-BP1_Tudor: Tumour suppressor p53-binding protein-1 Tudor; InterPro: IPR015125 This domain consist of ten beta-strands and a carboxy-terminal alpha-helix. The amino-terminal five beta-strands and the C-terminal five beta-strands adopt folds that are identical to each other. The domain is essential for the recruitment of proteins to double stranded breaks in DNA, which is mediated by interaction with methylated Lys 79 of histone H3 []. ; PDB: 3LGL_A 1XNI_B 3LGF_A 2G3R_A 2IG0_A 3LH0_A 1SSF_A.
Probab=43.17 E-value=51 Score=32.14 Aligned_cols=49 Identities=20% Similarity=0.247 Sum_probs=35.6
Q ss_pred cCCCeEEEEEcCCCcEEEEEEEeecccccccCCCEEEEEEEecCCceeecCCCccc
Q 001739 810 KKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRP 865 (1019)
Q Consensus 810 ~~G~lc~A~fs~D~~WYRA~V~~i~~~~~~~~~~~v~V~fVDYGn~e~V~~~~Lr~ 865 (1019)
-+|.-|.|+++.++-||=++|+.-. .+.++.|.|=| |....|..++|-.
T Consensus 4 ~iG~rV~AkWS~n~yyY~G~I~~~~------~~~kykv~FdD-G~~~~v~~~div~ 52 (122)
T PF09038_consen 4 FIGLRVFAKWSDNGYYYPGKITSDK------GKNKYKVLFDD-GYECRVLGKDIVV 52 (122)
T ss_dssp STT-EEEEESSTTSEEEEEEEEEEE------TTTEEEEEETT-S-EEEEECCCEEE
T ss_pred ccccEEEEEEccCCcccCceEeecC------CCCeEEEEecC-CccceeccCcEEE
Confidence 3788999999955566899888853 78999999977 7766666666543
No 33
>cd05834 HDGF_related The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF. This family of endogenous nuclear-targeted mitogens includes HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, HPR2, HPR3, HPR4, respectively) and lens epithelium-derived growth factor, LEDGF. Members of the HDGF family have been linked to human diseases, and HDGF is a prognostic factor in several types of cancer. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=41.94 E-value=36 Score=31.02 Aligned_cols=60 Identities=15% Similarity=0.207 Sum_probs=48.0
Q ss_pred CcCCCeEEEEEcCCCcEEEEEEEeecccccccCCCEEEEEEEecCCceeecCCCcccCCcccc
Q 001739 809 PKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLS 871 (1019)
Q Consensus 809 p~~G~lc~A~fs~D~~WYRA~V~~i~~~~~~~~~~~v~V~fVDYGn~e~V~~~~Lr~Lp~~f~ 871 (1019)
..+|+++-|+.. .--|.=|+|++.... ....+.+.|+|...+....|+.++|.++.+.+.
T Consensus 3 f~~GdlVwaK~k-Gyp~WPa~I~~~~~~--~~~~~~~~V~FfGt~~~a~v~~~~l~pf~~~~~ 62 (83)
T cd05834 3 FKAGDLVFAKVK-GYPAWPARVDEPEDW--KPPGKKYPVYFFGTHETAFLKPEDLFPYTENKK 62 (83)
T ss_pred CCCCCEEEEecC-CCCCCCEEEeccccc--CCCCCEEEEEEeCCCCEeEECHHHceecccchh
Confidence 578999999973 456889999987411 123689999999999999999999999987543
No 34
>cd05841 BS69_related The PWWP domain is part of BS69 protein, a nuclear protein that specifically binds adenoviral E1A and Epstein-Barr viral EBNA2 proteins, suppressing their transactivation functions. BS69 is a multi-domain protein, containing bromo, PHD, PWWP, and MYND domains. The specific role of the PWWP domain within BS69 is not clearly identified, but BS69 functions in chromatin remodeling, consistent with other PWWP-containing proteins. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=34.81 E-value=57 Score=29.84 Aligned_cols=55 Identities=16% Similarity=0.358 Sum_probs=45.6
Q ss_pred CCcCCCeEEEEEcCCCcEEEEEEEeecccccccCCCEEEEEEEe-cCCceeecCCCcccCCccc
Q 001739 808 NPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYID-YGNQELVPYNKLRPIDPSL 870 (1019)
Q Consensus 808 ~p~~G~lc~A~fs~D~~WYRA~V~~i~~~~~~~~~~~v~V~fVD-YGn~e~V~~~~Lr~Lp~~f 870 (1019)
+-.+|+++-|+.. .=-|.=|+|++. .++.+.|+|.. -.....|+.++|.++...+
T Consensus 6 c~~p~dLVwAK~k-Gyp~WPAkV~~~-------~~~~~~V~FFG~t~~~a~v~~~~i~~~~~~~ 61 (83)
T cd05841 6 CRPPHELVWAKLK-GFPYWPAKVMRV-------EDNQVDVRFFGGQHDRAWIPSNNIQPISTEI 61 (83)
T ss_pred cCCCCCEEEEeCC-CCCCCCEEEeec-------CCCeEEEEEcCCCCCeEEEehHHeeehhhhh
Confidence 4568999999973 335888999987 56899999987 8888999999999997654
No 35
>PF07039 DUF1325: SGF29 tudor-like domain; InterPro: IPR010750 SAGA-associated factor 29 is involved in transcriptional regulation, probably through association with histone acetyltransferase (HAT) complexes like the TFTC-HAT or STAGA complexes. It also may be involved in MYC-mediated oncogenic transformation. It is a component of the ATAC complex, which is a complex with histone acetyltransferase activity on histones H3 and H4 []. This entry represents a domain found in yeast and human SAGA-associated factor 29 proteins that is related to the tudor domain. ; PDB: 3MP6_A 3MP1_A 3MP8_A 3MET_B 3ME9_A 3MEU_B 3MEA_A 3MEV_B 3LX7_A 3MEW_A.
Probab=28.85 E-value=1.7e+02 Score=29.09 Aligned_cols=54 Identities=19% Similarity=0.296 Sum_probs=41.5
Q ss_pred cCCCeEEEEEc---CCCcEEEEEEEeecccccccCCCEEEEEEEecC---CceeecCCCcccCCc
Q 001739 810 KKGEIVLAQFS---ADNSWNRAMIVNAPREKVESVNDKFEVFYIDYG---NQELVPYNKLRPIDP 868 (1019)
Q Consensus 810 ~~G~lc~A~fs---~D~~WYRA~V~~i~~~~~~~~~~~v~V~fVDYG---n~e~V~~~~Lr~Lp~ 868 (1019)
++|+.|+|+.. .++.|-=|.|++... ...+++|.=+|-+ +.-.++.++|-+||.
T Consensus 1 q~G~~VAak~~~~~~~~~WIla~Vv~~~~-----~~~rYeV~D~d~~~~~~~~~~~~~~iIPLP~ 60 (130)
T PF07039_consen 1 QPGDQVAAKVKQGNEEEEWILAEVVKYNS-----DGNRYEVEDPDPEEEKKRYKLSRKQIIPLPK 60 (130)
T ss_dssp -TT-EEEEEECTTTTTCEEEEEEEEEEET-----TTTEEEEEETTTCTTTEEEEEEGGGEEEE-S
T ss_pred CCCCEEEEEcCCCCCCCCEEEEEEEEEeC-----CCCEEEEecCCCCCCCceEEeCHHHEEECCC
Confidence 47999999874 457899999999863 5569999999997 355678888888887
No 36
>KOG3038 consensus Histone acetyltransferase SAGA associated factor SGF29 [General function prediction only]
Probab=24.87 E-value=2.9e+02 Score=30.50 Aligned_cols=57 Identities=23% Similarity=0.316 Sum_probs=40.3
Q ss_pred CCCCcCCCeEEEEE---cCCCcEEEEEEEeecccccccCCCEEEEEEEecCC--ceeecCCCcccCCc
Q 001739 806 AFNPKKGEIVLAQF---SADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGN--QELVPYNKLRPIDP 868 (1019)
Q Consensus 806 ~~~p~~G~lc~A~f---s~D~~WYRA~V~~i~~~~~~~~~~~v~V~fVDYGn--~e~V~~~~Lr~Lp~ 868 (1019)
.+.+.+|+-++|++ ++|+.|-=|.|+.+. ....++|.-+|==- .+.-+..+|.+||.
T Consensus 125 ~~~~~~gd~VAa~v~~~~~dg~WIlaeVv~~~------~~~~ye~ev~D~Epk~d~~g~r~~~yklp~ 186 (264)
T KOG3038|consen 125 DYVLLKGDEVAARVKAVSEDGDWILAEVVKVS------SETRYEFEVVDPEPKKDEVGNRGQLYKLPR 186 (264)
T ss_pred CccccCCceeeeeeeeccCCCCEEEEEEEEEe------cCCceEeEecCCCccccccccccceecccH
Confidence 46788999999998 568889999999996 33337777766433 44455556666654
No 37
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=24.30 E-value=2.3e+02 Score=25.45 Aligned_cols=59 Identities=20% Similarity=0.308 Sum_probs=43.9
Q ss_pred CCcCCCeEEEEEcC------CCcEEEEEEEeecccccccC-CCEEEEEEEecCCceeecCCCcccC
Q 001739 808 NPKKGEIVLAQFSA------DNSWNRAMIVNAPREKVESV-NDKFEVFYIDYGNQELVPYNKLRPI 866 (1019)
Q Consensus 808 ~p~~G~lc~A~fs~------D~~WYRA~V~~i~~~~~~~~-~~~v~V~fVDYGn~e~V~~~~Lr~L 866 (1019)
.++.|++++.+-.. ++.|+=|.|+...-+..... ...++|--||-|....|+.+.+..+
T Consensus 5 ~Vk~Gd~ViV~~~~~~~~~~~~dWWmg~Vi~~~ggaR~P~~~tlFQVadVDtG~I~wVnaD~Vt~I 70 (75)
T PF11302_consen 5 SVKPGDTVIVQDEQEVGQKQDKDWWMGQVIHCEGGARDPKVPTLFQVADVDTGVIRWVNADEVTHI 70 (75)
T ss_pred ccCCCCEEEEecCccccccCCCCcEEEEEEEEeccccCCCCCceEEEEEccCCeEEEEEchheeee
Confidence 47899999998654 56799999998752111112 3459999999999999988776554
No 38
>PRK12442 translation initiation factor IF-1; Reviewed
Probab=24.13 E-value=1.3e+02 Score=27.68 Aligned_cols=31 Identities=29% Similarity=0.388 Sum_probs=23.7
Q ss_pred CccEEEEEEccCCEEEEEEcCCceEEEEEEee
Q 001739 186 PMQGIVEQARDGSTLRVYLLPEFQFVQVFVAG 217 (1019)
Q Consensus 186 ~~~~~Ve~V~dG~t~rv~~~~~~~~~~v~l~G 217 (1019)
.+.|+|+.+..++.|+|.+. ++..+.-.++|
T Consensus 8 e~~G~V~e~Lp~~~frV~Le-nG~~vla~isG 38 (87)
T PRK12442 8 ELDGIVDEVLPDSRFRVTLE-NGVEVGAYASG 38 (87)
T ss_pred EEEEEEEEECCCCEEEEEeC-CCCEEEEEecc
Confidence 47899999999999999986 44445555544
No 39
>PRK07899 rpsA 30S ribosomal protein S1; Reviewed
Probab=23.43 E-value=1.4e+03 Score=27.87 Aligned_cols=134 Identities=8% Similarity=0.091 Sum_probs=79.7
Q ss_pred CCCccEEEEEEEEEecCC-eEEEEEcCchhHHHHHHHHHHHHccCCCCCCCCCCcCCCeEEEEEcCCCcEEEEEEEeecc
Q 001739 757 GKQKEVLKVVVTEILGGG-KFYVQQVGDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPR 835 (1019)
Q Consensus 757 ~~~~~~~~V~VT~V~sp~-~FyvQ~~~~~~l~~L~~~L~~~~~~~~~~~~~~~p~~G~lc~A~fs~D~~WYRA~V~~i~~ 835 (1019)
.+.|+.++++|..+.+.. .+.+-... ..+...-+.+.+.+ +.+....+.|+++.
T Consensus 80 ~~vGd~Ie~~V~~~~~~~g~liLS~k~-~~~~~~w~~ie~~~-----------------------e~g~~V~G~V~~v~- 134 (486)
T PRK07899 80 VEVGDEVEALVLQKEDKEGRLILSKKR-AQYERAWGTIEKIK-----------------------EKDGVVTGTVIEVV- 134 (486)
T ss_pred CCCCCEEEEEEEEEECCCCeEEEEehh-hcccchHHHHHHHh-----------------------cCCCEEEEEEEEEE-
Confidence 346899999999987543 44443332 11122333333332 13445667788874
Q ss_pred cccccCCCEEEEEEEecCCceeecCCCcccCC-ccccCCCCceEEEEecceecCCCC----------CCCcHHHHHHHhh
Q 001739 836 EKVESVNDKFEVFYIDYGNQELVPYNKLRPID-PSLSSTPPLAQLCSLAYIKIPALE----------DEYGPEAAEFLNE 904 (1019)
Q Consensus 836 ~~~~~~~~~v~V~fVDYGn~e~V~~~~Lr~Lp-~~f~~lP~qAi~C~LagV~p~~~~----------~~Ws~eA~~~f~~ 904 (1019)
+.- +|||+|....+|.+.+-.-+ ..+..+.-+-++|.+-.+.+-... ..+...-..++.+
T Consensus 135 ------k~G---~~VdlGi~gflP~Sel~~~~~~~~~~~vGq~V~vkVleid~~~~~ivLSrr~~l~~~~~~~~~~~~~~ 205 (486)
T PRK07899 135 ------KGG---LILDIGLRGFLPASLVEMRRVRDLQPYIGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQ 205 (486)
T ss_pred ------CCe---EEEEECCEEEEEhhHhcccccCChhhcCCCEEEEEEEEEECCCCEEEEEhHHHHHhhhHHHHHHHHHh
Confidence 222 47777988888887553211 234456788999999887764321 1122222335556
Q ss_pred ccccCCCEEEEEEEEEeCCCCc
Q 001739 905 HTYNSSNEFRALVEERDSSGGK 926 (1019)
Q Consensus 905 lllv~~k~l~a~V~~~~~~g~~ 926 (1019)
+-.|..+.++|....+.|-+
T Consensus 206 --lk~G~iv~G~V~~i~~~G~F 225 (486)
T PRK07899 206 --LQKGQVRKGVVSSIVNFGAF 225 (486)
T ss_pred --ccCCCEEEEEEEEEECCeEE
Confidence 56789999999998876544
No 40
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=22.80 E-value=2e+02 Score=22.59 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=30.0
Q ss_pred EEEEEcCCCcEEEEEEEeecccccccCCCEEEEEEEecCCceeecCC
Q 001739 815 VLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYN 861 (1019)
Q Consensus 815 c~A~fs~D~~WYRA~V~~i~~~~~~~~~~~v~V~fVDYGn~e~V~~~ 861 (1019)
|=+.- ....|-.|.|++. .++.+.|...| |...+|+.+
T Consensus 4 vWvpD-~~egfv~g~I~~~-------~g~~vtV~~~~-G~~~tv~~d 41 (42)
T PF02736_consen 4 VWVPD-PKEGFVKGEIIEE-------EGDKVTVKTED-GKEVTVKKD 41 (42)
T ss_dssp EEEEE-SSSSEEEEEEEEE-------ESSEEEEEETT-TEEEEEEGG
T ss_pred EEEeC-CcccEEEEEEEEE-------cCCEEEEEECC-CCEEEeCCC
Confidence 44443 3567999999987 68999999999 998888754
No 41
>TIGR00008 infA translation initiation factor IF-1. This family consists of translation initiation factor IF-1 as found in bacteria and chloroplasts. This protein, about 70 residues in length, consists largely of an S1 RNA binding domain (pfam00575).
Probab=21.70 E-value=1.7e+02 Score=25.82 Aligned_cols=31 Identities=26% Similarity=0.306 Sum_probs=23.6
Q ss_pred CccEEEEEEccCCEEEEEEcCCceEEEEEEee
Q 001739 186 PMQGIVEQARDGSTLRVYLLPEFQFVQVFVAG 217 (1019)
Q Consensus 186 ~~~~~Ve~V~dG~t~rv~~~~~~~~~~v~l~G 217 (1019)
.+.|+|+.+..++.|+|.+. ++..+.-+++|
T Consensus 6 e~~G~V~e~L~~~~f~V~l~-ng~~vla~i~G 36 (68)
T TIGR00008 6 EMEGKVTESLPNAMFRVELE-NGHEVLAHISG 36 (68)
T ss_pred EEEEEEEEECCCCEEEEEEC-CCCEEEEEecC
Confidence 46899999999999999986 44445555544
No 42
>PF00855 PWWP: PWWP domain; InterPro: IPR000313 Upon characterisation of WHSC1, a gene mapping to the Wolf-Hirschhornsyndrome critical region and at its C terminus similar to the Drosophila melanogaster ASH1/trithorax group proteins, a novel protein domain designated PWWP domain was identified []. The PWWP domain is named after a conserved Pro-Trp-Trp-Pro motif. It is present in proteins of nuclear origin and plays a role in cell growth and differentiation. Due to its position, the composition of amino acids close to the PWWP motif and the pattern of other domains present it has been suggested that the domain is involved in protein-protein interactions [].; PDB: 3LYI_B 2L89_A 2NLU_A 1RI0_A 1KHC_A 3QKJ_C 2DAQ_A 1N27_A 3PFS_B 3QJ6_A ....
Probab=21.38 E-value=1.7e+02 Score=26.08 Aligned_cols=57 Identities=16% Similarity=0.351 Sum_probs=43.5
Q ss_pred cCCCeEEEEEcCCCcEEEEEEEeeccc-ccccCCCEEEEEEEecCCceeecCCCcccCC
Q 001739 810 KKGEIVLAQFSADNSWNRAMIVNAPRE-KVESVNDKFEVFYIDYGNQELVPYNKLRPID 867 (1019)
Q Consensus 810 ~~G~lc~A~fs~D~~WYRA~V~~i~~~-~~~~~~~~v~V~fVDYGn~e~V~~~~Lr~Lp 867 (1019)
++|++|-|+.. .--|.=|+|+..... ........+.|+|.+-.....|+.++|.++.
T Consensus 2 ~~GdlVWaK~~-g~pwWPa~V~~~~~~~~~~~~~~~~~V~Ffg~~~~~wv~~~~i~~f~ 59 (86)
T PF00855_consen 2 RPGDLVWAKLK-GYPWWPARVCDPDEKSKKKRKDGHVLVRFFGDNDYAWVKPSNIKPFS 59 (86)
T ss_dssp STTEEEEEEET-TSEEEEEEEEECCHCTSCSSSSTEEEEEETTTTEEEEEEGGGEEECC
T ss_pred CCCCEEEEEeC-CCCCCceEEeecccccccCCCCCEEEEEecCCCCEEEECHHHhhChh
Confidence 57999999983 556999999997410 0112568899999887777888888888886
No 43
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=21.26 E-value=69 Score=37.27 Aligned_cols=53 Identities=17% Similarity=0.163 Sum_probs=38.9
Q ss_pred CCCcCCCeEEEEEcCCCcEEEEEEEeecccccccCCCEEEEEEEecCCceeecCCCcccCC
Q 001739 807 FNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPID 867 (1019)
Q Consensus 807 ~~p~~G~lc~A~fs~D~~WYRA~V~~i~~~~~~~~~~~v~V~fVDYGn~e~V~~~~Lr~Lp 867 (1019)
..+.+|..|.|+. .|+.|++|+|..+ +...+.|.++=-|....+...++.+++
T Consensus 179 s~L~~gs~vlak~-~sdiWh~ari~~v-------d~~~q~vkv~~~g~~~s~kegD~~~~~ 231 (486)
T KOG2185|consen 179 SQLMVGSKVLAKS-GSDIWHKARIESV-------DDELQVVKVVFRGDKSSAKEGDSLALS 231 (486)
T ss_pred HHHhhcCeeeeec-cchhhhhhheeee-------ccceeEEEEEeccchhhhhcccccCcc
Confidence 3467899999997 5899999999999 455666666666766666555655554
No 44
>PF08169 RBB1NT: RBB1NT (NUC162) domain; InterPro: IPR012603 This domain is found N-terminal to the ARID/BRIGHT domain in DNA-binding proteins of the Retinoblastoma-binding protein 1 family [].; PDB: 2YRV_A.
Probab=20.57 E-value=2e+02 Score=27.13 Aligned_cols=58 Identities=24% Similarity=0.365 Sum_probs=31.3
Q ss_pred CCCeEEEEEcCC-CcEEEEEEEeecc-cccccCCCEEEEE-EEecCCceeecCCCcccCCcc
Q 001739 811 KGEIVLAQFSAD-NSWNRAMIVNAPR-EKVESVNDKFEVF-YIDYGNQELVPYNKLRPIDPS 869 (1019)
Q Consensus 811 ~G~lc~A~fs~D-~~WYRA~V~~i~~-~~~~~~~~~v~V~-fVDYGn~e~V~~~~Lr~Lp~~ 869 (1019)
.|.+|++.-..+ ..||=|.|+.-.- +.+....+.+.|+ |.| |-...|+..+++.+...
T Consensus 8 lGkVV~V~~~~~k~~W~PALVVsPsc~ddv~VkKD~~lVRSFkD-~KfysV~rkd~~e~~~~ 68 (96)
T PF08169_consen 8 LGKVVCVESTKKKTSWFPALVVSPSCNDDVTVKKDQCLVRSFKD-GKFYSVARKDVREFDID 68 (96)
T ss_dssp TTSEEEEE-SS-SS-EEEEEEE--SS-SS----TT-EEEEESSS---EEEE-TTTEE---ST
T ss_pred cCcEEEEEcCCCCCceeeEEEEcCCccceeeeccceEEEEEecc-CceEEEEhhhhhhcccc
Confidence 788888865433 3799999998531 1122245677887 666 99999999999998653
No 45
>cd06080 MUM1_like Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase V. It is highly expressed in several types of human cancers. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=20.51 E-value=2e+02 Score=26.15 Aligned_cols=53 Identities=21% Similarity=0.260 Sum_probs=40.0
Q ss_pred cCCCeEEEEEcCCCcEEEEEEEeecccccccCCCEEEEEEEecC-CceeecCCCcccCCc
Q 001739 810 KKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYG-NQELVPYNKLRPIDP 868 (1019)
Q Consensus 810 ~~G~lc~A~fs~D~~WYRA~V~~i~~~~~~~~~~~v~V~fVDYG-n~e~V~~~~Lr~Lp~ 868 (1019)
.+|+++-|++. .--|.=|+|.++.. ...++.|+|+.-+ ....+..++|.+-.+
T Consensus 2 ~~gdlVWaK~~-g~P~WPa~I~~~~~-----~~~k~~V~FfG~~~~~a~~~~~~l~p~~~ 55 (80)
T cd06080 2 EKNDLVWAKIQ-GYPWWPAVIKSISR-----KKQKARVNFIGDNMQSEKKGIRVVKRWLK 55 (80)
T ss_pred CCCCEEEEeCC-CCCCCCEEEeeecC-----CCCEEEEEEeCCCCceeccchhhcccccc
Confidence 57999999974 44588899999853 5789999998877 666677777655544
Done!