Query 001739
Match_columns 1019
No_of_seqs 437 out of 2891
Neff 6.8
Searched_HMMs 29240
Date Tue Mar 26 16:43:22 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001739.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1037-1041//hhsearch_pdb/001739hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bdl_A Staphylococcal nuclease 1.0 1 1 736.4 55.3 524 376-989 22-570 (570)
2 3bdl_A Staphylococcal nuclease 1.0 1 1 510.7 50.0 503 6-734 19-569 (570)
3 2hqx_A P100 CO-activator tudor 1.0 1 1 344.8 9.6 228 758-1009 14-244 (246)
4 2wac_A CG7008-PA; unknown func 1.0 1 1 319.4 24.2 215 760-998 2-218 (218)
5 4b9x_A TDRD1, tudor domain-con 1.0 1 1 282.6 23.7 187 756-965 12-203 (226)
6 4b9w_A TDRD1, tudor domain-con 1.0 1 1 279.7 24.1 184 756-962 12-200 (201)
7 3ntk_A Maternal protein tudor; 1.0 1 1 240.3 17.1 164 761-953 2-166 (169)
8 4eqp_A Thermonuclease; staphyl 1.0 1 1 194.3 13.4 130 8-153 6-139 (143)
9 4eqp_A Thermonuclease; staphyl 1.0 1 1 173.9 13.8 129 185-368 8-141 (143)
10 2diq_A Tudor and KH domain-con 1.0 1 1 171.2 6.3 100 783-890 9-108 (110)
No 1
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=1.00 E-value=1 Score=736.40 Aligned_cols=524 Identities=37% Similarity=0.589 Sum_probs=453.7
Q ss_pred CCCEEEEEEEEEECCEEEEECCCCCCCCCCCEEEEEEEECCCCCCCC-CCCCC-------CCCCHHHHHHHHHHHHCCCC
Q ss_conf 65112799999637489996089888997641699983204898899-99898-------77100899999998622893
Q 001739 376 DQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGN-PRKDE-------KPAAYAREAREFLRTRLIGR 447 (1019)
Q Consensus 376 ~~~~~~~V~~v~~gd~i~v~~~~~~~~~~~~e~~v~l~~i~~p~~~~-~~~~~-------~~~~~~~eare~lr~~~iGk 447 (1019)
.+.+.|+|++|++||||+|...+ +.+++|+|++|++|++.. ++++. .++||++|||||||++|+||
T Consensus 22 ~~~~~~~V~~V~DGDTi~v~~~~------g~~~~VRL~gIdaPe~~~~~~~~~~~~~~~~~~~p~g~eA~e~L~~~l~gk 95 (570)
T 3bdl_A 22 DKQFVAKVMQVLNADAIVVKLNS------GDYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFEAREFLRKKLIGK 95 (570)
T ss_dssp CSEEEEEEEEEETTTEEEEECTT------SCEEEEEETTEECCCCTTSCCGGGTTTCCHHHHSTTHHHHHHHHHHHHTTC
T ss_pred CCEEEEEEEEECCCCEEEEECCC------CCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 75799999999259889998799------978999998874887677777655544567666455899999999985898
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE-EEEEEEEECCCCCCCCCCCHHH
Q ss_conf 999999787512123443333789999999999976754568999877667544410-2236999538888989970122
Q 001739 448 QVNVQMEYSRKVVVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRI-IDFGSIFLLSPIKGEGDDASAV 526 (1019)
Q Consensus 448 ~v~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~ 526 (1019)
+|.+.++|.+++... . +..+..+ |.+++|++
T Consensus 96 ~V~~~~~~~~~~~~~--------------~--------------------~~~D~yg~R~la~v~~-------------- 127 (570)
T 3bdl_A 96 KVNVTVDYIRPASPA--------------T--------------------ETVPAFSERTCATVTI-------------- 127 (570)
T ss_dssp EEEEEEEEEESSCCC--------------S--------------------SCSSSSCCEEEEEEEE--------------
T ss_pred EEEEEEEEECCCCCC--------------C--------------------CCCCCCCCEEEEEECC--------------
T ss_conf 799999863146555--------------5--------------------6567778469999700--------------
Q ss_pred HCCCCCCCCCCCCHHHHHHHCCCEEEEECC-CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCHHCHH
Q ss_conf 102468999986328999872641878438-9643445899999999998832788778899994046727886101010
Q 001739 527 AQSNAAGQPAGVNVAELVVSRGLGNVINHR-DFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKAR 605 (1019)
Q Consensus 527 ~~~~~~~~~~~~nv~~~lv~~G~a~v~~~r-~~~~~~~~~~~l~~~e~~A~~~~~G~~~~~~~~~~~i~d~s~~~~~~~k 605 (1019)
+|.|||++||++|||.|.+|| .+++++.+|++|++||.+|+++++|+|+.+++++.+++|++. +..+++
T Consensus 128 ---------~g~~v~~~lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~A~~~~~GlW~~~~~~~~~~~d~~~-~~~~~~ 197 (570)
T 3bdl_A 128 ---------GGINIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGKGLHSKKEVPIHRVADISG-DTQKAK 197 (570)
T ss_dssp ---------TTEEHHHHHHHTTSSEECCCSSTTSCCCTTHHHHHHHHHHHHHTTCGGGCCSCCCCCCCEECTT-CHHHHH
T ss_pred ---------CCCCHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCC-CHHHHH
T ss_conf ---------8852999998575879984057743247579999999999998379877899998661453587-667799
Q ss_pred CCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCEEEEEEECCCCCC----------CCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 00300015984077999993199999982598506999992236899----------89857399999999995496499
Q 001739 606 DFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPG----------RNERYSNEALLLMRQKILQRDVE 675 (1019)
Q Consensus 606 ~~l~~l~r~~~l~~vVe~V~sG~~~rv~lp~~~~~I~~~LaGI~~P~----------~~e~~~~EA~~flk~~ll~R~V~ 675 (1019)
+|++++++++++.|+|++|.|||++++++|+.++.++++|+||+||+ ..++|+.+|+.|++.++++|+|+
T Consensus 198 ~~l~~~~~~~~~~~~V~~V~DGDT~~v~~~~~~~~~~vRL~GIdaPe~~~~~~~~~~~~~~~g~eA~~~l~~~l~~r~V~ 277 (570)
T 3bdl_A 198 QFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLITFLLAGIECPRGARNLPGLVQEGEPFSEEATLFTKELVLQREVE 277 (570)
T ss_dssp HHHHHHHHTCEEEEEEEEESSSSEEEEEETTTTEEEEEEESSEECCCCCEEETTEEECCCTTHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHCCEEEEEEEEEECCCEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 98778741883569999996899899998699949999999998998778788876646849999999999986698599
Q ss_pred EEEEEECCCCCEEEEEEECCCCHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC--C
Q ss_conf 99999878995999999499437889988398799420278999741689999999985024444455455212478--7
Q 001739 676 IEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVEGEEVSNG--A 753 (1019)
Q Consensus 676 v~V~~~Dk~G~~~g~L~~~~~nI~~~Ll~~GLA~v~~~~~~~~~~~~~~l~~AE~~AK~~k~glW~~~~~~~~~~~~--~ 753 (1019)
+.+.+.|++|++++++|+++.||+..||++|||+++ ++.....+...|..||++||++++|||+.+.|...+.+. .
T Consensus 278 ~~~~~~D~ygR~la~v~~~~~~v~~~Lv~~GlA~~~--~~~~~~~~~~~~~~aE~~Ak~~~~GlW~~~~~~~~~~~~~~~ 355 (570)
T 3bdl_A 278 VEVESMDKAGNFIGWLHIDGANLSVLLVEHALSKVH--FTAERSSYYKSLLSAEEAAKQKKEKVWAHYEEQPVEEVMPVL 355 (570)
T ss_dssp EEEEEECTTSCEEEEEEETTEEHHHHHHHTTSSEEC--GGGTTSTTHHHHHHHHHHHHHHTCGGGC----------CCCC
T ss_pred EEEEEECCCCCEEEEEEECCEEHHHHHHHCCCCEEE--ECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCC
T ss_conf 999768588989999998998799999972991898--617773269999999999998388977665654100002235
Q ss_pred CCCCCCCCEEEEEEEEEECCCEEEEEECCC-HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEE
Q ss_conf 555787629999999995198499997571-5699999999998702899978889867995999975899478999984
Q 001739 754 AVEGKQKEVLKVVVTEILGGGKFYVQQVGD-QKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVN 832 (1019)
Q Consensus 754 ~~~~~~~~~~~V~Vt~V~sp~~Fyvq~~~~-~~l~~L~e~L~~~~~~~~p~~~~~~p~~G~lcaA~fs~D~~WYRA~V~~ 832 (1019)
.......++++|+||+|.||++||||..+. ..|+.||++|+.++....+...++.|++|++|+|+|+ |+.||||+|++
T Consensus 356 ~~~~~~~~~~~V~Vt~V~sp~~Fyvq~~~~~~~l~~l~~~l~~~~~~~~~l~~~~~~~~G~~c~a~~~-d~~wyRa~I~~ 434 (570)
T 3bdl_A 356 EEKERSASYKPVFVTEITDDLHFYVQDVETGTQLEKLMENMRNDIASHPPVEGSYAPRRGEFCIAKFV-DGEWYRARVEK 434 (570)
T ss_dssp CCSSCCCCCEEEEEEEECTTSEEEEEEGGGHHHHHHHHHHHHHHHHHSCCCTTCCCCCTTCEEEEECT-TSCEEEEEEEE
T ss_pred CCCCCCCCEEEEEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEC-CCCEEEEEEEE
T ss_conf 66777886799999999779759999888378999999999998731888787767984978999987-99799999999
Q ss_pred ECCCCCCCCCCEEEEEEEECCCCEEECCCCCCCCCCCCCCC--CCCEEEEEECCEECCCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 23665335798899999752882000488821489334689--9750899965323299999990999999952233479
Q 001739 833 APREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSST--PPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSS 910 (1019)
Q Consensus 833 i~~~~~~~~~~~v~V~fIDyGn~e~V~~~~Lr~Lp~~f~~l--P~qA~~c~La~Vkp~~~~~~w~~eA~~~l~~lllv~g 910 (1019)
+. ....+.|+||||||++.|+.++||+||++|+.+ |+||++|+|++|+||. +.+|+.+|+.+|++ ++.+
T Consensus 435 v~------~~~~~~V~fvDyGn~e~v~~~~Lr~l~~~f~~l~lP~qA~~c~La~v~pp~-~~~w~~ea~~~f~~--lv~~ 505 (570)
T 3bdl_A 435 VE------SPAKIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQ-DDDARTDAVDSVVR--DIQN 505 (570)
T ss_dssp EE------ETTEEEEEETTTCCEEEECGGGEECCCGGGSTTTSCCCCEEEEETTEECCS-SHHHHHHHHHHHHH--HHTT
T ss_pred EC------CCCEEEEEEEECCCEEEEEHHHCCCCCHHHHCCCCCCCEEEEEECCEECCC-CCCCCHHHHHHHHH--HHCC
T ss_conf 76------998599999947982998779873588899369998146899989769689-88873999999999--8689
Q ss_pred CEEEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8899999999189984357897616999999449977388899884981332333459601599999999999999770
Q 001739 911 NEFRALVEERDSSGGKLKGQGTGTLLHVTLVAVDAEISINTLMVQEGLARVERRKRWGSRDRQAALENLEKFQEEAKTA 989 (1019)
Q Consensus 911 k~l~a~V~~~~~~~~~v~~~~~~~~~~VtL~~~~~~~sIne~LV~~GlA~~~~~~~~~~~~~~~~~~~l~~ae~~Ak~~ 989 (1019)
+.+.++|++... +.++|+|++.+...|||+.||++|||+.++++. ..++++++.|+++|+.||++
T Consensus 506 k~l~~~V~~~~~-----------~~~~V~L~~~~~~~sIn~~Lv~~G~A~~~~~~~---~~~~~~~~~l~~~q~~Ak~~ 570 (570)
T 3bdl_A 506 TQCLLNVEHLSA-----------GCPHVTLQFADSKGDVGLGLVKEGLVMVEVRKE---KQFQKVITEYLNAQESAKSA 570 (570)
T ss_dssp EEEEEEEEECCS-----------SSCEEEEEETTTCCBHHHHHHHTTSSEECCCCS---GGGHHHHHHHHHHHHTC---
T ss_pred CEEEEEEEEEEC-----------CCEEEEEEECCCCCCHHHHHHHCCCEECCHHHH---HHHHHHHHHHHHHHHHHHCC
T ss_conf 879999999958-----------917999997999850799998789818552011---44899999999999997409
No 2
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=1.00 E-value=1 Score=510.72 Aligned_cols=503 Identities=26% Similarity=0.348 Sum_probs=347.5
Q ss_pred CCCCCCEEEEEEEECCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCC----------CCCHHHHHHHHHHHHHC
Q ss_conf 67998188999696469867995089999999971399997105899898899----------99844999999999773
Q 001739 6 AAGGGWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGG----------LDEPFAWDSREFLRKLC 75 (1019)
Q Consensus 6 ~~~~~~~~g~V~~V~sGDTi~i~~~~~~~~g~~~~~~vrL~~IdaP~~~~~~~----------~~ep~a~eAre~Lr~~l 75 (1019)
.+....+.|+|++|+|||||+|.+.. | .+++|||+||||||+.++++ .++|||++||+|||+++
T Consensus 19 ~~~~~~~~~~V~~V~DGDTi~v~~~~----g--~~~~VRL~gIdaPe~~~~~~~~~~~~~~~~~~~p~g~eA~e~L~~~l 92 (570)
T 3bdl_A 19 SHMDKQFVAKVMQVLNADAIVVKLNS----G--DYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFEAREFLRKKL 92 (570)
T ss_dssp --CCSEEEEEEEEEETTTEEEEECTT----S--CEEEEEETTEECCCCTTSCCGGGTTTCCHHHHSTTHHHHHHHHHHHH
T ss_pred CCCCCEEEEEEEEECCCCEEEEECCC----C--CEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 56775799999999259889998799----9--78999998874887677777655544567666455899999999985
Q ss_pred CCE-EEEEEEEE---------ECCCC-CEEEEEEECCCCHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 861-99999234---------07999-18999995990268899764878999806767999157999999999999918
Q 001739 76 IGK-VTFRVDYA---------VPNIG-REFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQG 144 (1019)
Q Consensus 76 ~Gk-V~~~~~~~---------~~~~g-R~~g~v~~~g~~i~~~lv~~GlA~~~~~~~~~~~~~~~~~~l~~ae~~Ak~~~ 144 (1019)
+|| |+|.+++. .++|| |.+|+||++|.|||++||++|||+++.++.....++.++++|.+||++||+++
T Consensus 93 ~gk~V~~~~~~~~~~~~~~~~~D~yg~R~la~v~~~g~~v~~~lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~A~~~~ 172 (570)
T 3bdl_A 93 IGKKVNVTVDYIRPASPATETVPAFSERTCATVTIGGINIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNG 172 (570)
T ss_dssp TTCEEEEEEEEEESSCCCSSCSSSSCCEEEEEEEETTEEHHHHHHHTTSSEECCCSSTTSCCCTTHHHHHHHHHHHHHTT
T ss_pred CCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 89879999986314655556567778469999700885299999857587998405774324757999999999999837
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH-HCCCCCCCEEEEEECCCCEEEEEECCCCEEEEEEEEEECCCCC
Q ss_conf 997789988854432258998778996244889864-4079972188999705999999982896399999821028987
Q 001739 145 LGRWSKVPGAAEASIRNLPPSAIGDSSNFNAMALLD-ANKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAV 223 (1019)
Q Consensus 145 ~GlW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ve~V~dG~t~rv~~~~~~~~~~v~l~Gi~~P~~ 223 (1019)
+|||+.++.. ...++++.+. ..++++|++ ..+++++.|+|++|+|||||+|++++++..++|||+||||||+
T Consensus 173 ~GlW~~~~~~-~~~~~d~~~~------~~~~~~~l~~~~~~~~~~~~V~~V~DGDT~~v~~~~~~~~~~vRL~GIdaPe~ 245 (570)
T 3bdl_A 173 KGLHSKKEVP-IHRVADISGD------TQKAKQFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLITFLLAGIECPRG 245 (570)
T ss_dssp CGGGCCSCCC-CCCCEECTTC------HHHHHHHHHHHHHTCEEEEEEEEESSSSEEEEEETTTTEEEEEEESSEECCCC
T ss_pred CCCCCCCCCC-CCEEEECCCC------HHHHHHHHHHHHHCCEEEEEEEEEECCCEEEEEECCCCCEEEEEEEEEECCCC
T ss_conf 9877899998-6614535876------67799987787418835699999968998999986999499999999989987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCE
Q ss_conf 89998644686444578732000025211678875200247999998346999999999771697799999443588979
Q 001739 224 ARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNL 303 (1019)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~epfa~eAk~f~~~~ll~r~V~i~~~~~d~~g~~ 303 (1019)
.++. .+ + ..+.+|||.||+.|++.+|++|+|+|.+.+.|+|||+
T Consensus 246 ~~~~-----------~~--------------------~-----~~~~~~~g~eA~~~l~~~l~~r~V~~~~~~~D~ygR~ 289 (570)
T 3bdl_A 246 ARNL-----------PG--------------------L-----VQEGEPFSEEATLFTKELVLQREVEVEVESMDKAGNF 289 (570)
T ss_dssp CEEE-----------TT--------------------E-----EECCCTTHHHHHHHHHHHHTTCEEEEEEEEECTTSCE
T ss_pred CCCC-----------CC--------------------C-----CCCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCE
T ss_conf 7878-----------88--------------------7-----6646849999999999986698599999768588989
Q ss_pred EEEEEECCCCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 99999479988568999998627589984254434179999999999999880565665778999994223465112799
Q 001739 304 IGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTNYVPPQSNSKAIHDQNFTGKV 383 (1019)
Q Consensus 304 ~~~v~~~~g~~~~di~~~Ll~~Gla~~~~~~~~~~~~~~~~~l~~ae~~Ak~~r~g~W~~~~~~~~~~~~~~~~~~~~~V 383 (1019)
+|+||++ |. ||+++||++|||+++ ++..... +...|++||++||++|+|||+.+.|+......
T Consensus 290 la~v~~~-~~---~v~~~Lv~~GlA~~~-~~~~~~~--~~~~~~~aE~~Ak~~~~GlW~~~~~~~~~~~~---------- 352 (570)
T 3bdl_A 290 IGWLHID-GA---NLSVLLVEHALSKVH-FTAERSS--YYKSLLSAEEAAKQKKEKVWAHYEEQPVEEVM---------- 352 (570)
T ss_dssp EEEEEET-TE---EHHHHHHHTTSSEEC-GGGTTST--THHHHHHHHHHHHHHTCGGGC----------C----------
T ss_pred EEEEEEC-CE---EHHHHHHHCCCCEEE-ECCCCCC--HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCC----------
T ss_conf 9999989-98---799999972991898-6177732--69999999999998388977665654100002----------
Q ss_pred EEEEECCEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCC
Q ss_conf 99963748999608988899764169998320489889999898771008999999986228939999997875121234
Q 001739 384 VEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGNPRKDEKPAAYAREAREFLRTRLIGRQVNVQMEYSRKVVVEA 463 (1019)
Q Consensus 384 ~~v~~gd~i~v~~~~~~~~~~~~e~~v~l~~i~~p~~~~~~~~~~~~~~~~eare~lr~~~iGk~v~~~~~y~~~~~~~~ 463 (1019)
+. . ..+ .-.++.+.|.+-++..+
T Consensus 353 -----------------------~~----~--~~~------------------------~~~~~~~~V~Vt~V~sp---- 375 (570)
T 3bdl_A 353 -----------------------PV----L--EEK------------------------ERSASYKPVFVTEITDD---- 375 (570)
T ss_dssp -----------------------CC----C--CCS------------------------SCCCCCEEEEEEEECTT----
T ss_pred -----------------------CC----C--CCC------------------------CCCCCEEEEEEEEEECC----
T ss_conf -----------------------23----5--667------------------------77886799999999779----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCHHHHCCCCCCCCCCCCHHHH
Q ss_conf 43333789999999999976754568999877667544410223699953888898997012210246899998632899
Q 001739 464 APVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAEL 543 (1019)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~ 543 (1019)
. .| .|.+.+ ....+.++
T Consensus 376 ----------------------------------------~-~F-yvq~~~---------------------~~~~l~~l 392 (570)
T 3bdl_A 376 ----------------------------------------L-HF-YVQDVE---------------------TGTQLEKL 392 (570)
T ss_dssp ----------------------------------------S-EE-EEEEGG---------------------GHHHHHHH
T ss_pred ----------------------------------------C-EE-EEEECC---------------------CHHHHHHH
T ss_conf ----------------------------------------7-59-999888---------------------37899999
Q ss_pred HHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCHHCHHCCCCCCCCCCCCCEEEEE
Q ss_conf 98726418784389643445899999999998832788778899994046727886101010003000159840779999
Q 001739 544 VVSRGLGNVINHRDFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEY 623 (1019)
Q Consensus 544 lv~~G~a~v~~~r~~~~~~~~~~~l~~~e~~A~~~~~G~~~~~~~~~~~i~d~s~~~~~~~k~~l~~l~r~~~l~~vVe~ 623 (1019)
+ ..|...-.. ...-.+.+.++....- +.-++ .+.=+.|.|..
T Consensus 393 ~---------------------~~l~~~~~~-~~~l~~~~~~~~G~~c-~a~~~---------------d~~wyRa~I~~ 434 (570)
T 3bdl_A 393 M---------------------ENMRNDIAS-HPPVEGSYAPRRGEFC-IAKFV---------------DGEWYRARVEK 434 (570)
T ss_dssp H---------------------HHHHHHHHH-SCCCTTCCCCCTTCEE-EEECT---------------TSCEEEEEEEE
T ss_pred H---------------------HHHHHHHHC-CCCCCCCCCCCCCCEE-EEEEC---------------CCCEEEEEEEE
T ss_conf 9---------------------999998731-8887877679849789-99987---------------99799999999
Q ss_pred EECCCEEEEEEC-----------------C-------CCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 931999999825-----------------9-------8506999992236899898573999999999954964999999
Q 001739 624 VLSGHRFKVLIP-----------------K-------ETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVE 679 (1019)
Q Consensus 624 V~sG~~~rv~lp-----------------~-------~~~~I~~~LaGI~~P~~~e~~~~EA~~flk~~ll~R~V~v~V~ 679 (1019)
+.+...+.|++. + ..+++.|+|+||.+|. +..|+.+|..+|+++++++.+.+.|.
T Consensus 435 v~~~~~~~V~fvDyGn~e~v~~~~Lr~l~~~f~~l~lP~qA~~c~La~v~pp~-~~~w~~ea~~~f~~lv~~k~l~~~V~ 513 (570)
T 3bdl_A 435 VESPAKIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQ-DDDARTDAVDSVVRDIQNTQCLLNVE 513 (570)
T ss_dssp EEETTEEEEEETTTCCEEEECGGGEECCCGGGSTTTSCCCCEEEEETTEECCS-SHHHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred ECCCCEEEEEEEECCCEEEEEHHHCCCCCHHHHCCCCCCCEEEEEECCEECCC-CCCCCHHHHHHHHHHHCCCEEEEEEE
T ss_conf 76998599999947982998779873588899369998146899989769689-88873999999999868987999999
Q ss_pred EECCCCCEEEEEEEC--CCCHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 987899599999949--9437889988398799420278999741689999999985
Q 001739 680 TVDRTGTFLGSLWES--RTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKS 734 (1019)
Q Consensus 680 ~~Dk~G~~~g~L~~~--~~nI~~~Ll~~GLA~v~~~~~~~~~~~~~~l~~AE~~AK~ 734 (1019)
..+ .|.+++.|+.. ..+|+..|+++|||................|+.+|+.||+
T Consensus 514 ~~~-~~~~~V~L~~~~~~~sIn~~Lv~~G~A~~~~~~~~~~~~~~~~l~~~q~~Ak~ 569 (570)
T 3bdl_A 514 HLS-AGCPHVTLQFADSKGDVGLGLVKEGLVMVEVRKEKQFQKVITEYLNAQESAKS 569 (570)
T ss_dssp ECC-SSSCEEEEEETTTCCBHHHHHHHTTSSEECCCCSGGGHHHHHHHHHHHHTC--
T ss_pred EEE-CCCEEEEEEECCCCCCHHHHHHHCCCEECCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 995-89179999979998507999987898185520114489999999999999740
No 3
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=1.00 E-value=1 Score=344.81 Aligned_cols=228 Identities=32% Similarity=0.522 Sum_probs=198.3
Q ss_pred CCCCEEEEEEEEEECCCEEEEEECC-CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEEECCC
Q ss_conf 8762999999999519849999757-156999999999987028999788898679959999758994789999842366
Q 001739 758 KQKEVLKVVVTEILGGGKFYVQQVG-DQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPRE 836 (1019)
Q Consensus 758 ~~~~~~~V~Vt~V~sp~~Fyvq~~~-~~~l~~L~e~L~~~~~~~~p~~~~~~p~~G~lcaA~fs~D~~WYRA~V~~i~~~ 836 (1019)
+.++++.|+||+|.||++||||..+ ...++.||++|+.++....+..+++.|++|++|+|+|+ |+.||||+|+++.
T Consensus 14 ~~~~~~~V~Vt~v~~p~~f~vq~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~G~~c~a~~~-d~~wyRa~V~~~~-- 90 (246)
T 2hqx_A 14 RSASYKPVFVTEITDDLHFYVQDVETGTQFQKLMENMRNDIASHPPVEGSYAPRRGEFCIAKFV-DGEWYRARVEKVE-- 90 (246)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHSCCCTTTCCCCTTCEEEEECT-TSCEEEEEEEEEE--
T ss_pred CCCCEEEEEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECC-CCCEEEEEEEEEC--
T ss_conf 8887899999998789989999899589999999999998833899777877997999999907-9979999999976--
Q ss_pred CCCCCCCEEEEEEEECCCCEEECCCCCCCCCCCCC--CCCCCEEEEEECCEECCCCCCCCCHHHHHHHHHCCCCCCCEEE
Q ss_conf 53357988999997528820004888214893346--8997508999653232999999909999999522334798899
Q 001739 837 KVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLS--STPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFR 914 (1019)
Q Consensus 837 ~~~~~~~~v~V~fIDyGn~e~V~~~~Lr~Lp~~f~--~lP~qA~~c~La~Vkp~~~~~~w~~eA~~~l~~lllv~gk~l~ 914 (1019)
.+..+.|+||||||++.|+.++||+||++|+ .+|+||++|+|++|+||.. ..|..+|..+|.+ ++.++.+.
T Consensus 91 ----~~~~~~V~~vDyGn~~~v~~~~lr~l~~~~~~~~lp~~a~~~~L~~v~~p~~-~~~~~eA~~~l~~--lv~~k~v~ 163 (246)
T 2hqx_A 91 ----SPAKIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQD-DDARTDAVDSVVR--DIQNTQCL 163 (246)
T ss_dssp ----ETTEEEEEETTTCCEEEECGGGEECCCGGGSTTTSCCCC-------------------------------------
T ss_pred ----CCCEEEEEEEECCCEEEEEHHHHHCCCHHHCCCCCCHHHHHHHHHCEECCCC-CCCHHHHHHHHHH--HHCCCEEE
T ss_conf ----9985999998079859980899416897675778965652343523666888-5106999999999--86598899
Q ss_pred EEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999918998435789761699999944997738889988498133233345960159999999999999977046752
Q 001739 915 ALVEERDSSGGKLKGQGTGTLLHVTLVAVDAEISINTLMVQEGLARVERRKRWGSRDRQAALENLEKFQEEAKTARIGMW 994 (1019)
Q Consensus 915 a~V~~~~~~~~~v~~~~~~~~~~VtL~~~~~~~sIne~LV~~GlA~~~~~~~~~~~~~~~~~~~l~~ae~~Ak~~r~giW 994 (1019)
++|...+. +...|+|++.....+||+.||++|||.+.+... ....+..+.|+++|+.||++|+|||
T Consensus 164 ~~v~~~d~-----------g~~~v~L~~~~~~~~In~~LV~~GlA~~~~~~~---~~~~~~~~~~~~~e~~Ar~~r~GlW 229 (246)
T 2hqx_A 164 LNVEHLSA-----------GCPHVTLQFADSKGDVGLGLVKEGLVMVEVRKE---KQFQKVITEYLNAQESAKSARLNLW 229 (246)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEECC-----------CEEEEEEEECCCCCCHHHHHHHCCCEEECCCCH---HHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999239-----------947999995999756899998788878034321---5679999999999999987156834
Q ss_pred CCCCCCCCCCCCCCC
Q ss_conf 029999989999963
Q 001739 995 QYGDIQSDDEDPLPS 1009 (1019)
Q Consensus 995 ~yGD~~~dde~~~~~ 1009 (1019)
+|||+++|||++||+
T Consensus 230 ~~gd~~~dd~~~~~~ 244 (246)
T 2hqx_A 230 RYGDFRADDADEFGY 244 (246)
T ss_dssp ---------------
T ss_pred CCCCCCCCCCCCCCC
T ss_conf 279988242433577
No 4
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=319.36 Aligned_cols=215 Identities=31% Similarity=0.516 Sum_probs=189.5
Q ss_pred CCEEEEEEEEEECCCEEEEEECCC-HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEEECCCCC
Q ss_conf 629999999995198499997571-5699999999998702899978889867995999975899478999984236653
Q 001739 760 KEVLKVVVTEILGGGKFYVQQVGD-QKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPREKV 838 (1019)
Q Consensus 760 ~~~~~V~Vt~V~sp~~Fyvq~~~~-~~l~~L~e~L~~~~~~~~p~~~~~~p~~G~lcaA~fs~D~~WYRA~V~~i~~~~~ 838 (1019)
.++++|+||+|.||++||+|..+. ..++.|+++|+.++....+...++.|++|++|+|+|++|+.||||+|+++.
T Consensus 2 ~~~~~V~Vt~v~~p~~f~vq~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~g~~c~a~~~~d~~wyRa~V~~v~---- 77 (218)
T 2wac_A 2 VNYENVIVTEITETLTFFAQSVESGSKLESLMSKLHADFQSNPPIAGSYTPKRGDLVAAQFTLDNQWYRAKVERVQ---- 77 (218)
T ss_dssp CCCEEEEEEEECTTSEEEEEEGGGHHHHHHHHHHHHHHHHHSCCCTTSCCCCTTCEEEEECTTTCCEEEEEEEEEE----
T ss_pred CCEEEEEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEEC----
T ss_conf 8269999999859988999989978999999999999885199978875588599999999999929999999946----
Q ss_pred CCCCCEEEEEEEECCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCEECCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEE
Q ss_conf 35798899999752882000488821489334689975089996532329999999099999995223347988999999
Q 001739 839 ESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFRALVE 918 (1019)
Q Consensus 839 ~~~~~~v~V~fIDyGn~e~V~~~~Lr~Lp~~f~~lP~qA~~c~La~Vkp~~~~~~w~~eA~~~l~~lllv~gk~l~a~V~ 918 (1019)
++.+.|+||||||++.|+.++||+||++|+.+|+||++|+|++|++|. +..|+.+|.++|++ ++.++.+.++|.
T Consensus 78 ---~~~~~V~~vDyG~~~~v~~~~l~~l~~~~~~~p~~a~~~~Lagv~~p~-~~~w~~eA~~~l~~--lv~~k~v~~~v~ 151 (218)
T 2wac_A 78 ---GSNATVLYIDYGNKETLPTNRLAALPPAFSSEKPYATEYALALVALPT-DNEDKEEALRAFSE--DVLNHKVQLNVE 151 (218)
T ss_dssp ---TTEEEEEETTTCCEEEEEGGGEEECCGGGSSSCCSEEEEEETTEECCS-SHHHHHHHHHHHHH--HHBTCEEEEEEE
T ss_pred ---CCEEEEEEEECCCEEEECHHHCCCCCHHHCCCCCCEEEEEECCEECCC-CCCHHHHHHHHHHH--HHCCCEEEEEEE
T ss_conf ---990999998349969971698030786664698320599989779799-85308999999999--866977999999
Q ss_pred EEECCCCCCCCCCCCCE-EEEEEEECCCCCCHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99189984357897616-99999944997738889988498133233345960159999999999999977046752029
Q 001739 919 ERDSSGGKLKGQGTGTL-LHVTLVAVDAEISINTLMVQEGLARVERRKRWGSRDRQAALENLEKFQEEAKTARIGMWQYG 997 (1019)
Q Consensus 919 ~~~~~~~~v~~~~~~~~-~~VtL~~~~~~~sIne~LV~~GlA~~~~~~~~~~~~~~~~~~~l~~ae~~Ak~~r~giW~yG 997 (1019)
..+ . +. +.|+|++.+++.+||+.||++|||.+.++.. ....+..+.|.++|+.||++|+|||+||
T Consensus 152 ~~d-~----------g~~~~V~L~~~~~~~~in~~Lv~~G~A~~~~~~~---~~~~~~~~~~~~~e~~Ar~~r~GlW~~g 217 (218)
T 2wac_A 152 LKV-T----------GSPNLATLRDPTTKVDFGKQLVAEGLVLAEQRGE---RKLKELVDQYKAAQEAARVAHLAIWKYG 217 (218)
T ss_dssp ECC-T----------TSCEEEEEECTTTCCBHHHHHHHTTSSEECCCCC---GGGHHHHHHHHHHHHHHHHTTCGGGTTC
T ss_pred EEC-C----------CCEEEEEEEECCCCCCHHHHHHHCCCCCCCCCCC---HHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 974-9----------9628999993898734899998789941541012---3389999999999999998337876368
Q ss_pred C
Q ss_conf 9
Q 001739 998 D 998 (1019)
Q Consensus 998 D 998 (1019)
|
T Consensus 218 d 218 (218)
T 2wac_A 218 D 218 (218)
T ss_dssp -
T ss_pred C
T ss_conf 8
No 5
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=1.00 E-value=1 Score=282.57 Aligned_cols=187 Identities=26% Similarity=0.371 Sum_probs=165.5
Q ss_pred CCCCCCEEEEEEEEEECCCEEEEEECCC---HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEE
Q ss_conf 5787629999999995198499997571---5699999999998702899978889867995999975899478999984
Q 001739 756 EGKQKEVLKVVVTEILGGGKFYVQQVGD---QKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVN 832 (1019)
Q Consensus 756 ~~~~~~~~~V~Vt~V~sp~~Fyvq~~~~---~~l~~L~e~L~~~~~~~~p~~~~~~p~~G~lcaA~fs~D~~WYRA~V~~ 832 (1019)
++..++.++|+||+|.||++||||..+. ..|+.||++|+.++....+. .+.|++|++|+|+|++|+.||||+|++
T Consensus 12 ~l~~~~~~~V~Vt~v~sP~~Fyvq~~~~~~~~~L~~L~~~l~~~~~~~~~~--~~~~~~G~~c~a~~~~d~~WyRa~V~~ 89 (226)
T 4b9x_A 12 EFTVDETVDVVVCMMYSPGEFYCHFLKDDALEKLDDLNQSLADYCAQKPPN--GFKAEIGRPCCAFFSGDGNWYRALVKE 89 (226)
T ss_dssp CCCTTCEEEEEEEEEEETTEEEEEECCTTHHHHHHHHHHHHHHHTSSSCC----CCCCTTCEEEEEETTTTEEEEEEEEE
T ss_pred ECCCCCEEEEEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCC--CCCCCCCCEEEEEECCCCEEEEEEEEE
T ss_conf 759999899999999079999999868833999999999999988418987--778989989999988899499899999
Q ss_pred ECCCCCCCCCCEEEEEEEECCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCEECCCCCCCCCHHHHHHHHHCCCCCCCE
Q ss_conf 23665335798899999752882000488821489334689975089996532329999999099999995223347988
Q 001739 833 APREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNE 912 (1019)
Q Consensus 833 i~~~~~~~~~~~v~V~fIDyGn~e~V~~~~Lr~Lp~~f~~lP~qA~~c~La~Vkp~~~~~~w~~eA~~~l~~lllv~gk~ 912 (1019)
+. .++.+.|+||||||.+.|+.++||+||++|+.+|+||++|+|++|+|+ +..|+.+|+.+|++ ++.++.
T Consensus 90 ~~------~~~~~~V~~vDyGn~~~v~~~~l~~l~~~f~~lP~qA~~c~L~~v~p~--~~~w~~ea~~~f~~--l~~~k~ 159 (226)
T 4b9x_A 90 IL------PSGNVKVHFVDYGNVEEVTTDQLQAILPQFLLLPFQGMQCWLVDIQPP--NKHWTKEATARFQA--CVVGLK 159 (226)
T ss_dssp EC------SSSEEEEECTTTCCEEEEEGGGEECCCGGGSSSCBCCEEEEESSEECS--SSSCCHHHHHHHHH--HHTTCC
T ss_pred EC------CCCEEEEEEEECCCEEEEEHHHHCCCHHHHCCCCCCEEEEEEECEECC--CCCCCHHHHHHHHH--HHCCCE
T ss_conf 87------999599999813988999789916385887156621699999047989--99998999999999--878986
Q ss_pred EEEEEEEEECCCCCCCCCCCCCEEEEEEEECC--CCCCHHHHHHHCCCEEEECCC
Q ss_conf 99999999189984357897616999999449--977388899884981332333
Q 001739 913 FRALVEERDSSGGKLKGQGTGTLLHVTLVAVD--AEISINTLMVQEGLARVERRK 965 (1019)
Q Consensus 913 l~a~V~~~~~~~~~v~~~~~~~~~~VtL~~~~--~~~sIne~LV~~GlA~~~~~~ 965 (1019)
+.++|.....+ .+.|+|++.+ .+.+||+.||++|||......
T Consensus 160 l~~~V~~~~~~-----------~~~V~L~d~~~~~~~~I~~~Lv~~gla~~~~~~ 203 (226)
T 4b9x_A 160 LQARVVEITAN-----------GVGVELTDLSTPYPKIISDVLIREQLVLRCGSP 203 (226)
T ss_dssp EEEEEEEECSS-----------CEEEEEEECSSSSCEEHHHHHHHTTSSEECC--
T ss_pred EEEEEEEEECC-----------EEEEEEEECCCCCCCCHHHHHHHCCCCCCCCCC
T ss_conf 99999999399-----------279999988999986479999877996046882
No 6
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=1.00 E-value=1 Score=279.68 Aligned_cols=184 Identities=27% Similarity=0.379 Sum_probs=163.7
Q ss_pred CCCCCCEEEEEEEEEECCCEEEEEECCC---HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEE
Q ss_conf 5787629999999995198499997571---5699999999998702899978889867995999975899478999984
Q 001739 756 EGKQKEVLKVVVTEILGGGKFYVQQVGD---QKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVN 832 (1019)
Q Consensus 756 ~~~~~~~~~V~Vt~V~sp~~Fyvq~~~~---~~l~~L~e~L~~~~~~~~p~~~~~~p~~G~lcaA~fs~D~~WYRA~V~~ 832 (1019)
++..++.++|+||+|.||++||||..+. ..|+.||++|++++....+. .+.|++|++|+|+|++|+.||||+|++
T Consensus 12 ~l~~~~~~~V~Vt~v~sP~~Fyvq~~~~~~~~~l~~L~~~l~~~~~~~~~~--~~~~~~G~~c~a~~~~d~~wyRa~V~~ 89 (201)
T 4b9w_A 12 EFTVDETVDVVVCMMYSPGEFYCHFLKDDALEKLDDLNQSLADYCAQKPPN--GFKAEIGRPCCAFFSGDGNWYRALVKE 89 (201)
T ss_dssp CCCTTCEEEEEEEEEEETTEEEEEECCTTHHHHHHHHHHHHHHHHHSSSCC--CCCCCTTCEEEEEETTTTEEEEEEEEE
T ss_pred ECCCCCEEEEEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCC--CCCCCCCCEEEEEECCCCEEEEEEEEE
T ss_conf 759999899999999379999999888826999999999999988548987--778988989999988899299899999
Q ss_pred ECCCCCCCCCCEEEEEEEECCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCEECCCCCCCCCHHHHHHHHHCCCCCCCE
Q ss_conf 23665335798899999752882000488821489334689975089996532329999999099999995223347988
Q 001739 833 APREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNE 912 (1019)
Q Consensus 833 i~~~~~~~~~~~v~V~fIDyGn~e~V~~~~Lr~Lp~~f~~lP~qA~~c~La~Vkp~~~~~~w~~eA~~~l~~lllv~gk~ 912 (1019)
+. .++.+.|+||||||++.|+.++||+||++|+.+|+||++|+|++|+|+ +..|+.+|+++|++ ++.++.
T Consensus 90 ~~------~~~~~~V~~vDyG~~~~v~~~~l~~l~~~f~~lP~qA~~c~L~~v~p~--~~~w~~ea~~~f~~--l~~~k~ 159 (201)
T 4b9w_A 90 IL------PSGNVKVHFVDYGNVEEVTTDQLQAILPQFLLLPFQGMQCWLVDIQPP--NKHWTKEATARFQA--CVVGLK 159 (201)
T ss_dssp EC------TTSCEEEEETTTCCEEEECGGGEEECCGGGGSSCBCCEEEEESSEECS--SSSCCHHHHHHHHH--HHTTCC
T ss_pred EC------CCCEEEEEEECCCCEEEEEHHHHCCCHHHHCCCCHHHEEEEECCEECC--CCCCCHHHHHHHHH--HHCCCE
T ss_conf 87------999599999814988999889945471767166644199999298958--99997999999999--978997
Q ss_pred EEEEEEEEECCCCCCCCCCCCCEEEEEEEECC--CCCCHHHHHHHCCCEEEE
Q ss_conf 99999999189984357897616999999449--977388899884981332
Q 001739 913 FRALVEERDSSGGKLKGQGTGTLLHVTLVAVD--AEISINTLMVQEGLARVE 962 (1019)
Q Consensus 913 l~a~V~~~~~~~~~v~~~~~~~~~~VtL~~~~--~~~sIne~LV~~GlA~~~ 962 (1019)
+.++|..... +.+.|+|++.+ .+.+||+.||++|||..+
T Consensus 160 l~~~V~~~~~-----------~~~~V~L~d~~~~~~~~I~~~Lv~~gLA~kc 200 (201)
T 4b9w_A 160 LQARVVEITA-----------NGVGVELTDLSTPYPKIISDVLIREQLVLRC 200 (201)
T ss_dssp EEEEEEEEET-----------TEEEEEEEECSSSSCEEHHHHHHHTTSSEEC
T ss_pred EEEEEEEEEC-----------CEEEEEEEECCCCCCCCHHHHHHHCCCEECC
T ss_conf 9999999969-----------9789999998999965569999877684015
No 7
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=1.00 E-value=1 Score=240.33 Aligned_cols=164 Identities=23% Similarity=0.324 Sum_probs=142.3
Q ss_pred CEEEEEEEEEECCCEEEEEECCC-HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEEECCCCCC
Q ss_conf 29999999995198499997571-56999999999987028999788898679959999758994789999842366533
Q 001739 761 EVLKVVVTEILGGGKFYVQQVGD-QKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVE 839 (1019)
Q Consensus 761 ~~~~V~Vt~V~sp~~Fyvq~~~~-~~l~~L~e~L~~~~~~~~p~~~~~~p~~G~lcaA~fs~D~~WYRA~V~~i~~~~~~ 839 (1019)
++++|+||+|.||++||+|..+. ..|+.||++|+.++.. .|. ...|++|++|+|+|++|+.||||+|+++.
T Consensus 2 e~~~V~Vt~v~~p~~F~vq~~~~~~~L~~L~~~l~~~~~~-~p~--~~~~~~G~~c~A~~~~d~~wyRa~I~~~~----- 73 (169)
T 3ntk_A 2 ELHNCVVVQFDGPMSFYVQMESDVPALEQMTDKLLDAEQD-LPA--FSDLKEGALCVAQFPEDEVFYRAQIRKVL----- 73 (169)
T ss_dssp CCEEEEEEEEEETTEEEEEEGGGHHHHHHHHHHHHHHGGG-CCB--CCCCCTTCEEEEEETTTTEEEEEEEEEEC-----
T ss_pred CCEEEEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHC-CCC--CCCCCCCCEEEEEECCCCCEEEEEEEEEC-----
T ss_conf 5058999999689979999879779999999999878851-898--77899899999998789969999999977-----
Q ss_pred CCCCEEEEEEEECCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCEECCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEEE
Q ss_conf 57988999997528820004888214893346899750899965323299999990999999952233479889999999
Q 001739 840 SVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFRALVEE 919 (1019)
Q Consensus 840 ~~~~~v~V~fIDyGn~e~V~~~~Lr~Lp~~f~~lP~qA~~c~La~Vkp~~~~~~w~~eA~~~l~~lllv~gk~l~a~V~~ 919 (1019)
.++.+.|+||||||++. .++||+||++|+.+|+||++|+|++|+|+.. +.+|..+|++ ++.|+.+.++|.+
T Consensus 74 -~~~~~~V~fvDyGn~~~--v~~lr~l~~~f~~lP~qA~~c~L~~v~~~~~----~~ea~~~f~~--l~~~k~l~~~V~~ 144 (169)
T 3ntk_A 74 -DDGKCEVHFIDFGNNAV--TQQFRQLPEELAKPARYSRHCELDASTISKC----DAALLQSFID--TRFSETFQVEILA 144 (169)
T ss_dssp -STTCEEEEETTTTEEEE--ESCEECCCHHHHSSCCSSEEEEECGGGSCHH----HHHHHHHHHH--TTTTSEEEEEEEE
T ss_pred -CCCEEEEEEEECCCEEE--HHHHHCCCHHHHHCCCEEEEEEECCCCCCCC----HHHHHHHHHH--HHCCCEEEEEEEE
T ss_conf -99979999994499698--1344434787750780059999898198999----0999999999--8679859999999
Q ss_pred EECCCCCCCCCCCCCEEEEEEEECCCCCCHHHHH
Q ss_conf 9189984357897616999999449977388899
Q 001739 920 RDSSGGKLKGQGTGTLLHVTLVAVDAEISINTLM 953 (1019)
Q Consensus 920 ~~~~~~~v~~~~~~~~~~VtL~~~~~~~sIne~L 953 (1019)
... +..+.|+|+++ +.+||+.|
T Consensus 145 ~~~----------~~~~~V~L~~~--~~~in~~L 166 (169)
T 3ntk_A 145 TKG----------TGTHVVRLFYQ--SKNISEKL 166 (169)
T ss_dssp ECT----------TSCEEEEEEET--TEEHHHHC
T ss_pred ECC----------CCCEEEEEEEC--CCCHHHHH
T ss_conf 159----------98789999979--99788985
No 8
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ...
Probab=1.00 E-value=1 Score=194.27 Aligned_cols=130 Identities=23% Similarity=0.240 Sum_probs=111.5
Q ss_pred CCCCEEEEEEEECCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCC-CE-EEEEEE-
Q ss_conf 998188999696469867995089999999971399997105899898899998449999999997738-61-999992-
Q 001739 8 GGGWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGLDEPFAWDSREFLRKLCI-GK-VTFRVD- 84 (1019)
Q Consensus 8 ~~~~~~g~V~~V~sGDTi~i~~~~~~~~g~~~~~~vrL~~IdaP~~~~~~~~~ep~a~eAre~Lr~~l~-Gk-V~~~~~- 84 (1019)
.-..+.++|.+|+|||||.|... | ...+|||+||||||+ .||||.+|++||++++. |+ |.+.++
T Consensus 6 ~~~~~~~~V~~V~DGDTi~v~~~-----g--~~~~VRL~gIDaPE~------~q~~g~~A~~~l~~ll~~g~~V~~~~d~ 72 (143)
T 4eqp_A 6 KLHKEPATLIKAIDGDTVKLMYK-----G--QPMTFRLLLVDTPEF------NEKYGPEASAFTKKMVENAKKDEVEFDK 72 (143)
T ss_dssp -CCEEEEEEEEECSSSEEEEEET-----T--EEEEEEETTEECCCT------TSTTHHHHHHHHHHHHHHCSCEEEECCS
T ss_pred CCCEEEEEEEEEECCCEEEEEEC-----C--CEEEEEEEEECCCCC------CCCHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 77404699999978999999859-----9--089999986638976------8956999999999998639818999855
Q ss_pred -EEECCCCCEEEEEEECCCCHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf -340799918999995990268899764878999806767999157999999999999918997789988
Q 001739 85 -YAVPNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPG 153 (1019)
Q Consensus 85 -~~~~~~gR~~g~v~~~g~~i~~~lv~~GlA~~~~~~~~~~~~~~~~~~l~~ae~~Ak~~~~GlW~~~~~ 153 (1019)
...++|||.+|+||++|.|||++||++|||+++..+. .+..+...|..+|++||++++|||+..+|
T Consensus 73 ~~~~D~ygR~la~v~~~g~~vn~~lv~~GlA~v~~~~~---~~~~~~~~~~~aE~~Ar~~k~GlW~~~~p 139 (143)
T 4eqp_A 73 GQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYK---GNNTHEQLLRKAEAQAKKEKLNIWSEDNA 139 (143)
T ss_dssp SCSBCTTSCEEEEEEETTEEHHHHHHHTTSSEECCCCT---TSCTTHHHHHHHHHHHHHTTCGGGC----
T ss_pred CCCCCCCCCEEEEEEECCCHHHHHHHHCCCEEEEEECC---CCCCHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 65647789899999999955899999879868976518---88316999999999999857898999999
No 9
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ...
Probab=1.00 E-value=1 Score=173.91 Aligned_cols=129 Identities=23% Similarity=0.360 Sum_probs=109.6
Q ss_pred CCCCEEEEEECCCCEEEEEECCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 97218899970599999998289639999982102898789998644686444578732000025211678875200247
Q 001739 185 RPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTASA 264 (1019)
Q Consensus 185 ~~~~~~Ve~V~dG~t~rv~~~~~~~~~~v~l~Gi~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (1019)
...++.|.+|+|||||+|.. .++.++|||+||||||+
T Consensus 8 ~~~~~~V~~V~DGDTi~v~~--~g~~~~VRL~gIDaPE~----------------------------------------- 44 (143)
T 4eqp_A 8 HKEPATLIKAIDGDTVKLMY--KGQPMTFRLLLVDTPEF----------------------------------------- 44 (143)
T ss_dssp CEEEEEEEEECSSSEEEEEE--TTEEEEEEETTEECCCT-----------------------------------------
T ss_pred CEEEEEEEEEECCCEEEEEE--CCCEEEEEEEEECCCCC-----------------------------------------
T ss_conf 40469999997899999985--99089999986638976-----------------------------------------
Q ss_pred CCCCCCCHHHHHHHHHHHHHCC-CCEEEEEE---EEECCCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEE-ECCCCCCH
Q ss_conf 9999983469999999997716-97799999---4435889799999947998856899999862758998-42544341
Q 001739 265 GQQSTDEPFALDAKYFTEMRVL-NREVRIVL---EGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYI-EWSANMME 339 (1019)
Q Consensus 265 ~~~~~~epfa~eAk~f~~~~ll-~r~V~i~~---~~~d~~g~~~~~v~~~~g~~~~di~~~Ll~~Gla~~~-~~~~~~~~ 339 (1019)
.+|||.+|+.|++.+|+ +++|.+.+ .+.|+|||++|+||. +|. ||+++||++|||+++ .+..+. .
T Consensus 45 -----~q~~g~~A~~~l~~ll~~g~~V~~~~d~~~~~D~ygR~la~v~~-~g~---~vn~~lv~~GlA~v~~~~~~~~-~ 114 (143)
T 4eqp_A 45 -----NEKYGPEASAFTKKMVENAKKDEVEFDKGQRTDKYGRGLAYIYA-DGK---MVNEALVRQGLAKVAYVYKGNN-T 114 (143)
T ss_dssp -----TSTTHHHHHHHHHHHHHHCSCEEEECCSSCSBCTTSCEEEEEEE-TTE---EHHHHHHHTTSSEECCCCTTSC-T
T ss_pred -----CCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEEE-CCC---HHHHHHHHCCCEEEEEECCCCC-C
T ss_conf -----89569999999999986398189998556564778989999999-995---5899999879868976518883-1
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 79999999999999880565665778999
Q 001739 340 EDAKRRLKAADLQAKKTRLRMWTNYVPPQ 368 (1019)
Q Consensus 340 ~~~~~~l~~ae~~Ak~~r~g~W~~~~~~~ 368 (1019)
+...|.+||++||++|+|||+...|++
T Consensus 115 --~~~~~~~aE~~Ar~~k~GlW~~~~p~~ 141 (143)
T 4eqp_A 115 --HEQLLRKAEAQAKKEKLNIWSEDNADS 141 (143)
T ss_dssp --THHHHHHHHHHHHHTTCGGGC------
T ss_pred --HHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf --699999999999985789899999998
No 10
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=1.00 E-value=1 Score=171.24 Aligned_cols=100 Identities=23% Similarity=0.442 Sum_probs=90.0
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEEECCCCCCCCCCEEEEEEEECCCCEEECCCC
Q ss_conf 15699999999998702899978889867995999975899478999984236653357988999997528820004888
Q 001739 783 DQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNK 862 (1019)
Q Consensus 783 ~~~l~~L~e~L~~~~~~~~p~~~~~~p~~G~lcaA~fs~D~~WYRA~V~~i~~~~~~~~~~~v~V~fIDyGn~e~V~~~~ 862 (1019)
...|++||++|+.++....+ .++.|++|++|+|+|++|+.||||+|+++. ..+.+.|+||||||++.|+.++
T Consensus 9 ~~~l~~L~~~m~~~y~~~~~--~~~~~~~G~~c~a~~~~d~~wyRA~V~~~~------~~~~~~V~fvDyGn~e~v~~~~ 80 (110)
T 2diq_A 9 SLQLDKLVNEMTQHYENSVP--EDLTVHVGDIVAAPLPTNGSWYRARVLGTL------ENGNLDLYFVDFGDNGDCPLKD 80 (110)
T ss_dssp CHHHHHHHHHHHHHHTTSCC--CCCCCCTTCEEEECCTTTCSCEEEEECCCC------SSSCEEEEETTTCCEEEECGGG
T ss_pred HHHHHHHHHHHHHHHCCCCC--CCCCCCCCCEEEEEECCCCEEEEEEEEEEC------CCCEEEEEEEECCCEEEEEHHH
T ss_conf 89999999999999824899--877898799999998789959999999988------9995999999379859986499
Q ss_pred CCCCCCCCCCCCCCEEEEEECCEECCCC
Q ss_conf 2148933468997508999653232999
Q 001739 863 LRPIDPSLSSTPPLAQLCSLAYIKIPAL 890 (1019)
Q Consensus 863 Lr~Lp~~f~~lP~qA~~c~La~Vkp~~~ 890 (1019)
||+|+++|+.+|+||++|+|++|+|...
T Consensus 81 Lr~l~~~f~~lP~qA~~c~L~~v~p~~~ 108 (110)
T 2diq_A 81 LRALRSDFLSLPFQAIECSLARIASGPS 108 (110)
T ss_dssp CEECCHHHHSSCCSSCCSCSSCSCCSCC
T ss_pred HHCCCHHHHCCCCCEEEEEECCEEECCC
T ss_conf 5507597727894409999998598999
Done!