Query 001740
Match_columns 1019
No_of_seqs 288 out of 3147
Neff 8.6
Searched_HMMs 29240
Date Tue Mar 26 17:10:39 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001740.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1037-1041//hhsearch_pdb/001740hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zxe_A Na, K-ATPase alpha subu 1.0 1 1 923.6 44.1 770 48-1014 73-875 (1028)
2 3ar4_A Sarcoplasmic/endoplasmi 1.0 1 1 922.4 50.9 791 47-1011 29-851 (995)
3 3ixz_A Potassium-transporting 1.0 1 1 920.3 65.5 770 48-1013 78-879 (1034)
4 1mhs_A Proton pump, plasma mem 1.0 1 1 824.8 38.3 649 48-986 93-752 (920)
5 3b8c_A ATPase 2, plasma membra 1.0 1 1 812.2 -8.1 644 47-967 37-692 (885)
6 3rfu_A Copper efflux ATPase; a 1.0 1 1 609.7 35.8 495 110-930 191-696 (736)
7 3j09_A COPA, copper-exporting 1.0 1 1 603.2 42.4 489 110-930 177-676 (723)
8 3j08_A COPA, copper-exporting 1.0 1 1 596.0 40.0 487 111-929 100-597 (645)
9 2yj3_A Copper-transporting ATP 1.0 1 1 211.1 0.0 251 402-914 10-262 (263)
10 3a1c_A Probable copper-exporti 1.0 1 1 177.7 21.9 272 402-913 14-287 (287)
No 1
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A
Probab=1.00 E-value=1 Score=923.57 Aligned_cols=770 Identities=19% Similarity=0.210 Sum_probs=595.2
Q ss_pred CCCCCCCCCCCEEECCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--C---C----CCCCCCHHHHHHHHHHH
Q ss_conf 000015899971103677-424355799999987887999999987503137--8---7----78742102243476655
Q 001740 48 FEASVLNYSGNYVRTTKY-TLATFFPKALFEQFRRVANVYFLICAILSFTPL--S---P----YSAVSNVLPLVVVIGAT 117 (1019)
Q Consensus 48 ~~~~~~~~g~N~i~t~ky-~~~~flp~~l~~qf~~~~~~~fl~~~il~~i~~--~---~----~~~~~~~~~l~~vi~~s 117 (1019)
.++|+.+||+|+++.++. ++| +.+++||.++++++++++++++++.. . . .+.+...++++++++++
T Consensus 73 ~~~r~~~~G~N~l~~~~~~~~~----~~~~~~~~~~~~~iL~~aa~ls~~~~~~~~~~~~~~~~~~~~~~~~i~~vv~i~ 148 (1028)
T 2zxe_A 73 AKEILARDGPNSLTPPPTTPEW----IKFCRQLFGGFSILLWIGAILCFLAYGIQAATEDEPANDNLYLGVVLSTVVIVT 148 (1028)
T ss_dssp HHHHHHHHCCSCCCCCCCCCHH----HHHHTTTTSTHHHHHHHHHHHHHHHHHHHHHSSCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 9999986699979999999899----999999970899999999999999987511345666520079998989888899
Q ss_pred HCHHHHHHHHHHHHHHHH---HCCEEEEEECCCEEEEEECCCCCCCCEEEECCCCCCCCCEEEEEECCCCCEEEEEECCC
Q ss_conf 118899999997435987---42227899159819997315785360998317985675189972058996299991377
Q 001740 118 MGKEVLEDWRRKKQDIEV---NNRKVKVHCGEGAFDYTKWRDLKVGDVVKVEKDEFFPADLILLSSSYEEAICYVETTNL 194 (1019)
Q Consensus 118 ~i~~~~~d~~r~k~~~~~---n~~~~~V~~r~g~~~~i~~~~L~vGDII~i~~ge~iPaD~ilL~~s~~~~~~~Vdts~L 194 (1019)
++.++++++|..++.+.+ .+.+++|+ |||++++|++++|+|||||.|++||.||||++|++|++ |+||||+|
T Consensus 149 ~~~~~~qe~ka~~~~~~L~~l~~~~a~V~-Rdg~~~~I~~~~Lv~GDiV~l~~Gd~IPaD~~ll~g~~----~~VdeS~L 223 (1028)
T 2zxe_A 149 GCFSYYQEAKSSRIMDSFKNMVPQQALVI-RDGEKSTINAEFVVAGDLVEVKGGDRIPADLRIISAHG----CKVDNSSL 223 (1028)
T ss_dssp HHHHHHHTCCCCCHHHHHHTTSCSEEEEE-ETTEEEEEEGGGCCTTCEEEEETTCBCCSEEEEEEEEE----EEEECHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEE-ECCEEEEEEHHHCCCCCEEEECCCCEEECEEEEEEECC----EEEECCCC
T ss_conf 99999999999999999885278726999-89999999888978677799899798412289996085----89986756
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCEECCCCEEECCCCEEEEEEE
Q ss_conf 88775222100111246778212234607999515999962038999953853468988800157355228818999998
Q 001740 195 DGETNLKLKQALDATSNMHEDSNFQNFKAIIRCEDPNANLYTFVGSLELEEQQYPLTPQQLLLRDSKLRNTDCIYGAVIF 274 (1019)
Q Consensus 195 tGEs~~~~K~~~~~~~~~~~~~~~~~~~~~i~~e~pn~~~~~f~Gt~~~~g~~~~l~~~n~l~rgs~l~nt~~~~gvVv~ 274 (1019)
||||.|+.|.++... ..+++..|++++||.+.+ |+++|+|++
T Consensus 224 TGES~pv~K~~~~~~-------------------------------------~~~~~~~n~v~~GT~v~~-G~~~~~V~~ 265 (1028)
T 2zxe_A 224 TGESEPQTRSPEFSS-------------------------------------ENPLETRNIAFFSTNCVE-GTARGVVVY 265 (1028)
T ss_dssp HSCCSCEECCSSCCC-------------------------------------SSTTTCSSEECTTCEEEE-EEEEEEEEE
T ss_pred CCCCCCEECCCCCCC-------------------------------------CCCCCCCCEEEECCEEEC-CEEEEEEEE
T ss_conf 788763443467788-------------------------------------884453354873746970-169999998
Q ss_pred ECCCCCC---CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4554221---1345899985528999876999999999999999999864125311256753332233679998766851
Q 001740 275 TGRDTKV---FQNSTGPPSKRSKVERRMDKIIYFLFGILVLMSFIGSIFFGIATREDLQDGKMKRWYLRPDDTTAYYDPK 351 (1019)
Q Consensus 275 tG~~Tk~---~~~~~~~~~k~s~le~~~~~~~~~~~~~~i~~~~i~~i~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 351 (1019)
||.+|++ +++...++.+++++++.+++++.+++.+.++++++.+++..+... .|+
T Consensus 266 tG~~T~~g~i~~~~~~~~~~~t~lq~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~---------~~~------------- 323 (1028)
T 2zxe_A 266 TGDRTVMGRIATLASGLEVGRTPIAIEIEHFIHIITGVAVFLGVSFFILSLILGY---------SWL------------- 323 (1028)
T ss_dssp CGGGSHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---------CHH-------------
T ss_pred ECCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---------CHH-------------
T ss_conf 4514398899986037887889289999999999999999999999999997367---------699-------------
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEEECCCCCC
Q ss_conf 25789999999999997202334036789999999897751341111223698743246533431137039997587620
Q 001740 352 RAAVAAVLHFLTALMLYGYLIPISLYVSIEIVKILQSIFINQDLHMYYEETDKPARARTSNLNEELGQVDTILSDKTGTL 431 (1019)
Q Consensus 352 ~~~~~~~~~~~~~i~l~~~~iP~sL~v~i~~~~~~~~~~i~~d~~m~~~~~~~~i~~~~~~~~e~Lg~v~~i~~DKTGTL 431 (1019)
..+..++.+++.+||++||++++++..+++.+| +++++++|+++.+|+||++++|||||||||
T Consensus 324 -------~~~~~~i~llv~~iP~~Lp~~vti~l~~~~~~m----------ak~~ilvk~~~avE~Lg~v~~Ic~DKTGTL 386 (1028)
T 2zxe_A 324 -------EAVIFLIGIIVANVPEGLLATVTVCLTLTAKRM----------ARKNCLVKNLEAVETLGSTSTICSDKTGTL 386 (1028)
T ss_dssp -------HHHHHHHHHHHHHSCTTHHHHHHHHHHHHHHHH----------HTTTEEESSTTHHHHHHHCCEEEECCCCCC
T ss_pred -------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH----------HHCCCEECCCHHHHHHCCCEEEECCCCCCC
T ss_conf -------999999999999747417999999999999998----------558916444567664147629951688888
Q ss_pred CCCEEEEEEEEECCEEECCCCHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 01303999999937651488217899987623999962200100133446886667333313668899864899999999
Q 001740 432 TCNSMEFIKCSIAGTSYGRGVTEVERAMARRKGSPLEEEVTEEQEDKASIKGFNFEDERIMNGSWVNEPHADVIQKFLRL 511 (1019)
Q Consensus 432 T~n~m~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~d~~~~~~~~~~~~~~~~~~~~~~~ 511 (1019)
|+|+|++.++++.+..|.....+ . ..+. .........+.++.+
T Consensus 387 T~n~m~v~~~~~~~~~~~~~~~~-----------~--------------~~~~------------~~~~~~~~~~~l~~~ 429 (1028)
T 2zxe_A 387 TQNRMTVAHMWFDNQIHEADTTE-----------N--------------QSGA------------AFDKTSATWSALSRI 429 (1028)
T ss_dssp BCSSCEEEEEEETTEEEECCCCT-----------T--------------CCSC------------CCCSSCHHHHHHHHH
T ss_pred CCCEEEEEEEEECCEEEECCCCC-----------C--------------CCCC------------CCCCCCHHHHHHHHH
T ss_conf 87738999999898465136777-----------7--------------6554------------446677899999999
Q ss_pred HHHCCEEECCCCCCCCC--EEEEECCCCHHHHHHHHHHCCCEEEEECCCEEEEEECCCCCCCCEEEEEEEEEEECCCCCC
Q ss_conf 70012155332489981--7998079408999999998895999752863699943787785201788896753378898
Q 001740 512 LAICHTALPEVDEENGK--ISYEAESPDEAAFVIAARELGFEFYERTQTSISVHELDPVTGTKVERSYSLLNVLEFSSSR 589 (1019)
Q Consensus 512 lalC~~~~~~~~~~~~~--~~y~~~sp~e~Alv~~a~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~il~~~~F~s~r 589 (1019)
+++||++.++...+... ..+..++|+|.|++++++..|.... +.+..|+++..+||+|+|
T Consensus 430 ~alc~~~~~~~~~~~hp~~~~~~~gdp~E~Al~~~a~~~~~~~~------------------~~~~~~~~~~~~pF~s~r 491 (1028)
T 2zxe_A 430 AALCNRAVFQAGQDNVPILKRSVAGDASESALLKCIELCCGSVQ------------------GMRDRNPKIVEIPFNSTN 491 (1028)
T ss_dssp HHHSCCCEECTTCTTSCGGGSCEESCHHHHHHHHHHHHHHSCHH------------------HHHHHSCEEEEECCCTTT
T ss_pred HHHCCCCEEECCCCCCCCCCCEECCCCHHHHHHHHHHHHCCCHH------------------HHHHHCCEEEEECCCCCC
T ss_conf 98657876504777776645300789409999999999589888------------------988748267870447666
Q ss_pred CEEEEEEEEC---CCEEEEEECCCCHHHHHHHHHC---------CHHHHHHHHHHHHHHHHCCCEEEEEEEEECCHHHHH
Q ss_conf 1289999807---9909999816646888987201---------222399999999999862574889999975998999
Q 001740 590 KRMSVIVRSE---EGTLLLLSKGADSVMFERLAEN---------GREFEEQTKEHINEYADAGLRTLILAYRELDEKEYK 657 (1019)
Q Consensus 590 krmsviv~~~---~g~~~l~~KGa~~~i~~~~~~~---------~~~~~~~~~~~l~~~~~~Glr~l~~A~k~l~~~e~~ 657 (1019)
||||++++.+ ++++++|+||||+.|+++|... +++.++.+.+++++++.+|+|+|++|||+++++++.
T Consensus 492 k~msvi~~~~~~~~~~~~~~~KGA~e~il~~c~~~~~~g~~~~l~~~~~~~~~~~~~~~a~~G~RvL~~A~~~l~~~~~~ 571 (1028)
T 2zxe_A 492 KYQLSIHENEKSSESRYLLVMKGAPERILDRCSTILLNGAEEPLKEDMKEAFQNAYLELGGLGERVLGFCHFALPEDKYN 571 (1028)
T ss_dssp CEEEEEEECSCTTTCCEEEEEEECHHHHHTTEEEECBTTBCCBCCHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSTTSC
T ss_pred CEEEEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCC
T ss_conf 64799994057888717999938828999874565338972128889999999999999855997999998746822134
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHC
Q ss_conf 99999999862020139999999999740290899731024435889199999998659929999389866699999875
Q 001740 658 QFNEEFTEAKNSVSADREELAEEIAEKIEKNLILLGATAVEDKLQNGVPECIDKLAQAGIKLWVLTGDKMETAINIGFAC 737 (1019)
Q Consensus 658 ~~~~~~~~a~~~~~~~r~~~~~~~~~~iE~dl~llG~~~ieD~lr~~v~~~I~~L~~aGIkv~ilTGD~~~ta~~ia~~~ 737 (1019)
++. . .+++ ..+.+|.|++|+|+++++|++|++++++|+.|+++||++||+|||+..||.++|++|
T Consensus 572 ~~~--------~--~~~~-----~~~~~e~~l~~lG~i~i~Dplr~~~~~aI~~l~~aGI~v~miTGD~~~tA~~ia~~l 636 (1028)
T 2zxe_A 572 EGY--------P--FDAD-----EPNFPTTDLCFVGLMAMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGV 636 (1028)
T ss_dssp TTC--------C--CCTT-----TTCSCCSSEEEEEEEEEECCBCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHH
T ss_pred CCC--------C--CCHH-----HHHHHHCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHC
T ss_conf 201--------2--4624-----555554380998651157899844899999999869979998899779999999986
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHCHHHHHHH
Q ss_conf 64437934999917887543343045799999999863568764021111357689899699993501346303889999
Q 001740 738 SLLRQGMRQVIISSETPESKTLEKSEDKSAAAAALKASVLHQLIRGKELLDSSNESLGPLALIIDGKSLTYALEDDVKDL 817 (1019)
Q Consensus 738 gi~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvi~G~~l~~~l~~~~~~~ 817 (1019)
||...+...+ ...... .... .... ........+++|.++....++++.
T Consensus 637 gi~~~~~~~i------------------~~~~~~--~~~~------~~~~----~~~~~~~~vi~G~~l~~~~~~~l~-- 684 (1028)
T 2zxe_A 637 GIISEGNETI------------------EDIAAR--LNIP------IGQV----NPRDAKACVVHGSDLKDLSTEVLD-- 684 (1028)
T ss_dssp TSSCTTCCCH------------------HHHHHH--TTCC------GGGS----CGGGCCEEEEEHHHHTTCCHHHHH--
T ss_pred CCCCCCCHHH------------------HHHHHH--CCCC------HHHC----CCCCCCEEEEECHHHHHCCHHHHH--
T ss_conf 9887883367------------------777764--1863------2221----555662699880885647999999--
Q ss_pred HHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHCCCCCEEECCCCCHHHHHCCCEECCC--CH
Q ss_conf 9999720572089825920199999999720898399983997792333104844023287401342216541013--01
Q 001740 818 FLELAIGCASVICCRSSPKQKALVTRLVKTKTSSTTLAIGDGANDVGMLQEADIGVGISGVEGMQAVMSSDIAIAQ--FR 895 (1019)
Q Consensus 818 ~~~~~~~~~~vv~~r~sp~qK~~iV~~lk~~~g~~vlaiGDG~ND~~ml~~AdvGIai~g~~~~~a~~~aD~vi~~--f~ 895 (1019)
++...++.++|||++|+||..+|+.+++ .|..|+|+|||.||++||++||+||||+.+....++++||+++.+ |.
T Consensus 685 --~~~~~~~~~v~ar~~P~~K~~iV~~lq~-~g~~V~~iGDG~ND~paLk~AdvGIAmg~~gtd~ak~aAD~Vl~~~~~~ 761 (1028)
T 2zxe_A 685 --DILHYHTEIVFARTSPQQKLIIVEGCQR-QGAIVAVTGDGVNDSPALKKADIGVAMGISGSDVSKQAADMILLDDNFA 761 (1028)
T ss_dssp --HHHHHCSEEEEESCCHHHHHHHHHHHHH-TTCCEEEEECSGGGHHHHHHSSEEEEESSSCCHHHHHHCSEEETTCCTH
T ss_pred --HHHHHCCCEEEEECCHHHHHHHHHHHHH-CCCEEEEECCCCCHHHHHHHCCCEEEECCCCCHHHHHHCCEEECCCCHH
T ss_conf --9986279679998588899999999996-8998999858853399998689119967765888998548995579877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 16899988635577687877999878689999999999975115463242458889967675456787553024566535
Q 001740 896 FLERLLLVHGHWCYRRISSMICYFFYKNIAFGFTLFFFEAYASFSGQPVYNDWFLSLYNVFFTSLPVIALGVFDQDVSAR 975 (1019)
Q Consensus 896 ~l~~lll~~Gr~~~~~~~~~i~~~~~~ni~~~~~~~~~~~~~~fs~~~~~~~~~~l~~n~i~t~lp~~~~~~~~~d~~~~ 975 (1019)
.+.++ +.|||++|.|+++++.|.+++|+..+++.+++.++. ...++++++++|+|++++.+|+++++. + ++.++
T Consensus 762 ~I~~~-i~~gR~i~~ni~k~i~~~l~~n~~~~~~~~~~~~~~---~~~~l~~~qil~inl~~d~~pa~al~~-e-~~~~~ 835 (1028)
T 2zxe_A 762 SIVTG-VEEGRLIFDNLKKSIAYTLTSNIPEITPFLVFIIGN---VPLPLGTVTILCIDLGTDMVPAISLAY-E-QAESD 835 (1028)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHC---CCCSSCHHHHHHHHTTTTHHHHHHGGG-C-CCSSC
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHHHCC-C-CCCHH
T ss_conf 99999-999999999999999999999999999999999976---664457999999999999999998602-8-66145
Q ss_pred HHHHCCCCHHH-HHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44205941263-3100137999999999999999999766
Q 001740 976 FCLKVGTKFLS-FLLTIDKNLMVALIKTSYKSLKHSLFIY 1014 (1019)
Q Consensus 976 ~l~~~P~ly~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~f 1014 (1019)
+|.++|+..+. ............+..+++++++.++..|
T Consensus 836 ~m~~~Pr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~ 875 (1028)
T 2zxe_A 836 IMKRQPRNPKTDKLVNERLISMAYGQIGMIQALGGFFSYF 875 (1028)
T ss_dssp GGGSCCCCTTTCCSSCHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6515999952134527999999999999999999999999
No 2
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Probab=1.00 E-value=1 Score=922.45 Aligned_cols=791 Identities=20% Similarity=0.228 Sum_probs=591.8
Q ss_pred CCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCC-----CCCCHHHHHHHHHHHHCH
Q ss_conf 100001589997110367742435579999998788799999998750313-78778-----742102243476655118
Q 001740 47 SFEASVLNYSGNYVRTTKYTLATFFPKALFEQFRRVANVYFLICAILSFTP-LSPYS-----AVSNVLPLVVVIGATMGK 120 (1019)
Q Consensus 47 ~~~~~~~~~g~N~i~t~ky~~~~flp~~l~~qf~~~~~~~fl~~~il~~i~-~~~~~-----~~~~~~~l~~vi~~s~i~ 120 (1019)
+.++|+++||+|+++.+++..++ +.+++||+++++++|++++++++++ +.+.+ .+...+.++++++++.+.
T Consensus 29 e~~~r~~~~G~N~l~~~~~~~~~---~~~~~qf~~~~~~~l~~~a~~s~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i 105 (995)
T 3ar4_A 29 QVKRHLEKYGHNELPAEEGKSLW---ELVIEQFEDLLVRILLLAACISFVLAWFEEGEETITAFVEPFVILLILIANAIV 105 (995)
T ss_dssp HHHHHHHHHCCSSCCCCCCCCHH---HHHHGGGCSHHHHHHHHHHHHHHHHTTSCCSSGGGSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999975688732898898699---999999988999999999999999886025665403478768866788999999
Q ss_pred HHHHHHHHHHHHHH---HHCCEEEEEECCCE--EEEEECCCCCCCCEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCC
Q ss_conf 89999999743598---74222789915981--99973157853609983179856751899720589962999913778
Q 001740 121 EVLEDWRRKKQDIE---VNNRKVKVHCGEGA--FDYTKWRDLKVGDVVKVEKDEFFPADLILLSSSYEEAICYVETTNLD 195 (1019)
Q Consensus 121 ~~~~d~~r~k~~~~---~n~~~~~V~~r~g~--~~~i~~~~L~vGDII~i~~ge~iPaD~ilL~~s~~~~~~~Vdts~Lt 195 (1019)
+.++++|..++.+. +.+.+++|+ |+|+ .++|+|++|+|||||.|++||.||||++|++++. +.|+||||+||
T Consensus 106 ~~~qe~~a~~al~~L~~~~~~~a~V~-R~g~~~~~~I~~~~lv~GDiV~l~~Gd~IPaD~~ll~~~s--~~l~VdeS~LT 182 (995)
T 3ar4_A 106 GVWQERNAENAIEALKEYEPEMGKVY-RADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKS--TTLRVDQSILT 182 (995)
T ss_dssp HHHHHHHCCCHHHHHGGGSCSEEEEE-BTTCSSCEEEEGGGCCTTCEEEEETTCBCCSEEEEEEECS--SCEEEECHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEE-ECCCCEEEEEEHHHCCCCCEEEECCCCCCCCCEEEEEEEE--CEEEEECCCCC
T ss_conf 99999999999999871089738999-3798647997899987787899889784354489998850--43999825246
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCEECCCCEEECCCCEEEEEEEE
Q ss_conf 87752221001112467782122346079995159999620389999538534689888001573552288189999984
Q 001740 196 GETNLKLKQALDATSNMHEDSNFQNFKAIIRCEDPNANLYTFVGSLELEEQQYPLTPQQLLLRDSKLRNTDCIYGAVIFT 275 (1019)
Q Consensus 196 GEs~~~~K~~~~~~~~~~~~~~~~~~~~~i~~e~pn~~~~~f~Gt~~~~g~~~~l~~~n~l~rgs~l~nt~~~~gvVv~t 275 (1019)
|||.|+.|.+++... + ...+.+..|++++||.+.+ |+++|+|++|
T Consensus 183 GES~pv~K~~~~~~~-------------------~---------------~~~~~~~~~~v~~GT~v~~-G~~~~~V~~t 227 (995)
T 3ar4_A 183 GESVSVIKHTEPVPD-------------------P---------------RAVNQDKKNMLFSGTNIAA-GKALGIVATT 227 (995)
T ss_dssp CCCSCEEECCSCCCC-------------------T---------------TCCGGGCTTEECTTCEEEE-CEEEEEEEEC
T ss_pred CCCCCEECCCCCCCC-------------------C---------------CCCCCCCCCEEECCCEEEC-CEEEEEEEEC
T ss_conf 887633400456677-------------------6---------------6675554546761878984-4589999976
Q ss_pred CCCCCCC---CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 5542211---3458999855289998769999999999999999998641253112567533322336799987668512
Q 001740 276 GRDTKVF---QNSTGPPSKRSKVERRMDKIIYFLFGILVLMSFIGSIFFGIATREDLQDGKMKRWYLRPDDTTAYYDPKR 352 (1019)
Q Consensus 276 G~~Tk~~---~~~~~~~~k~s~le~~~~~~~~~~~~~~i~~~~i~~i~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 352 (1019)
|.+|+++ +....++.+++++++.++++..++..+.++++++.++++..+...... + ..|+
T Consensus 228 G~~T~~g~i~~~~~~~~~~~tplq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~-------------- 290 (995)
T 3ar4_A 228 GVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHFNDPVH-G--GSWI-------------- 290 (995)
T ss_dssp GGGSHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGGSCSS-S--SCHH--------------
T ss_pred CCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-C--CHHH--------------
T ss_conf 7221989999973257878993899999999999999999999999999987414334-6--4079--------------
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEEECCCCCCC
Q ss_conf 57899999999999972023340367899999998977513411112236987432465334311370399975876200
Q 001740 353 AAVAAVLHFLTALMLYGYLIPISLYVSIEIVKILQSIFINQDLHMYYEETDKPARARTSNLNEELGQVDTILSDKTGTLT 432 (1019)
Q Consensus 353 ~~~~~~~~~~~~i~l~~~~iP~sL~v~i~~~~~~~~~~i~~d~~m~~~~~~~~i~~~~~~~~e~Lg~v~~i~~DKTGTLT 432 (1019)
......|..++.+++.+||++||++++++...++.+| +++++++|+++.+|+||++++||||||||||
T Consensus 291 --~~~~~~~~~ai~l~v~aiP~~Lp~~vt~~la~~~~~m----------a~~~~lvr~~~~iE~Lg~v~~ic~DKTGTLT 358 (995)
T 3ar4_A 291 --RGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRM----------AKKNAIVRSLPSVETLGCTSVICSDKTGTLT 358 (995)
T ss_dssp --HHHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHHHHH----------HHTTEEESCTTHHHHHHTCCEEEEESTTTTB
T ss_pred --HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH----------CCCCCEECCCHHHHHHCCCEEEEECCCCCCC
T ss_conf --9999999999999998667604899999999999984----------4178486134155550383399765888766
Q ss_pred CCEEEEEEEEECCEEECCCCHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 13039999999376514882178999876239999622001001334468866673333136688998648999999997
Q 001740 433 CNSMEFIKCSIAGTSYGRGVTEVERAMARRKGSPLEEEVTEEQEDKASIKGFNFEDERIMNGSWVNEPHADVIQKFLRLL 512 (1019)
Q Consensus 433 ~n~m~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~d~~~~~~~~~~~~~~~~~~~~~~~l 512 (1019)
+|+|++.++++.+..++......+...+....+|. + ....++........+.+..++.++
T Consensus 359 ~n~m~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---------------~-----~~~~~~~~~~~~~~~~~~~l~~~~ 418 (995)
T 3ar4_A 359 TNQMSVCKMFIIDKVDGDFCSLNEFSITGSTYAPE---------------G-----EVLKNDKPIRSGQFDGLVELATIC 418 (995)
T ss_dssp CCCCEEEEEEEEEEEETTEEEEEEEEECCSSSSSC---------------C-----CEEETTEECCGGGCHHHHHHHHHH
T ss_pred CCCEEEEEEEECCCCCCCCCCCCEEECCCCCCCCC---------------C-----CCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 58569999983475567655430254047776886---------------3-----101366434444558999999999
Q ss_pred HHCCEEECCCCCCCCCEEEEECCCCHHHHHHHHHHCCCEEEEECCCEEEEEECCCCCCCCEEEEEEEEEEECCCCCCCEE
Q ss_conf 00121553324899817998079408999999998895999752863699943787785201788896753378898128
Q 001740 513 AICHTALPEVDEENGKISYEAESPDEAAFVIAARELGFEFYERTQTSISVHELDPVTGTKVERSYSLLNVLEFSSSRKRM 592 (1019)
Q Consensus 513 alC~~~~~~~~~~~~~~~y~~~sp~e~Alv~~a~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~il~~~~F~s~rkrm 592 (1019)
++||++.++.++..+. ....++|+|.|++.++++.|+ +.. ....+...+.........+..|++++.+||+|+||||
T Consensus 419 alc~~~~~~~~~~~~~-~~~~g~p~E~Al~~~a~~~g~-~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~pF~s~rk~m 495 (995)
T 3ar4_A 419 ALCNDSSLDFNETKGV-YEKVGEATETALTTLVEKMNV-FNT-EVRNLSKVERANACNSVIRQLMKKEFTLEFSRDRKSM 495 (995)
T ss_dssp HHSCCCEEEEETTTTE-EEEESCHHHHHHHHHHHHHCT-TCC-CCTTSCTTTSTTHHHHHHHHHEEEEEEEEEETTTTEE
T ss_pred HHCCCCCCCCCCCCCC-EEECCCCCHHHHHHHHHHCCC-CCC-CCCCCCCCCCCCCCHHHHHHHCCEEEEEECCCCCCEE
T ss_conf 8748880565688983-255479647999999998399-641-0001342010121015566417457774048888756
Q ss_pred EEEEEECCC-----EEEEEECCCCHHHHHHHHHC---------CHHHHHHHHHHHHHH--HHCCCEEEEEEEEECCHHHH
Q ss_conf 999980799-----09999816646888987201---------222399999999999--86257488999997599899
Q 001740 593 SVIVRSEEG-----TLLLLSKGADSVMFERLAEN---------GREFEEQTKEHINEY--ADAGLRTLILAYRELDEKEY 656 (1019)
Q Consensus 593 sviv~~~~g-----~~~l~~KGa~~~i~~~~~~~---------~~~~~~~~~~~l~~~--~~~Glr~l~~A~k~l~~~e~ 656 (1019)
||+++.++| +..+|+||||+.|+++|... +++.++.+.++++++ +.+|+|+|++|||+++..+
T Consensus 496 svi~~~~~g~~~~~~~~~~~KGa~e~il~~c~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~GlRvLa~A~k~~~~~~- 574 (995)
T 3ar4_A 496 SVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKR- 574 (995)
T ss_dssp EEEEEESSCCSCSCCCEEEEEECHHHHHHTEEEEEETTEEEECCHHHHHHHHHHHHHHHHSTTCCEEEEEEEESSCCCG-
T ss_pred EEEEECCCCCCCCCCEEEEECCCHHHHHHHCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCC-
T ss_conf 9998348987666444999758879999854054428973249999999999999987763056148899998347651-
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHH
Q ss_conf 99999999986202013999999999974029089973102443588919999999865992999938986669999987
Q 001740 657 KQFNEEFTEAKNSVSADREELAEEIAEKIEKNLILLGATAVEDKLQNGVPECIDKLAQAGIKLWVLTGDKMETAINIGFA 736 (1019)
Q Consensus 657 ~~~~~~~~~a~~~~~~~r~~~~~~~~~~iE~dl~llG~~~ieD~lr~~v~~~I~~L~~aGIkv~ilTGD~~~ta~~ia~~ 736 (1019)
+...+ .+ ...++.+|.|++|+|+++++|++|++++++|+.|+++||++||+|||+..||.++|++
T Consensus 575 ---------~~~~~-~~-----~~~~~~~e~~l~~lG~~~i~D~lr~~~~~~I~~l~~~Gi~v~miTGD~~~ta~~ia~~ 639 (995)
T 3ar4_A 575 ---------EEMVL-DD-----SSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRR 639 (995)
T ss_dssp ---------GGCCT-TC-----GGGHHHHTCSEEEEEEEEEECCBCTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHH
T ss_pred ---------CCCCC-CC-----CHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHH
T ss_conf ---------11222-34-----0244553069489999852588966699999999986998999899978999999998
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHCHHHHHH
Q ss_conf 56443793499991788754334304579999999986356876402111135768989969999350134630388999
Q 001740 737 CSLLRQGMRQVIISSETPESKTLEKSEDKSAAAAALKASVLHQLIRGKELLDSSNESLGPLALIIDGKSLTYALEDDVKD 816 (1019)
Q Consensus 737 ~gi~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvi~G~~l~~~l~~~~~~ 816 (1019)
+||...+... . ..+++|.++..+.++++.+
T Consensus 640 lgi~~~~~~i--------~------------------------------------------~~~~~g~~~~~l~~~~~~~ 669 (995)
T 3ar4_A 640 IGIFGENEEV--------A------------------------------------------DRAYTGREFDDLPLAEQRE 669 (995)
T ss_dssp HTSSCTTCCC--------T------------------------------------------TTEEEHHHHHTSCHHHHHH
T ss_pred CCCCCCCCCC--------C------------------------------------------CEEEECHHHHHCCHHHHHH
T ss_conf 3967788753--------5------------------------------------------3489836646289999999
Q ss_pred HHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHCCCCCEEECCCCCHHHHHCCCEECCC--C
Q ss_conf 99999720572089825920199999999720898399983997792333104844023287401342216541013--0
Q 001740 817 LFLELAIGCASVICCRSSPKQKALVTRLVKTKTSSTTLAIGDGANDVGMLQEADIGVGISGVEGMQAVMSSDIAIAQ--F 894 (1019)
Q Consensus 817 ~~~~~~~~~~~vv~~r~sp~qK~~iV~~lk~~~g~~vlaiGDG~ND~~ml~~AdvGIai~g~~~~~a~~~aD~vi~~--f 894 (1019)
... +..+|||++|+||..+|+.+++ .|+.|+|+|||.||++||++||+||+|+ +....|+++||+++.+ |
T Consensus 670 ~~~------~~~v~~r~~P~~K~~~v~~l~~-~g~~v~~~GDG~ND~~alk~Advgiamg-~g~~~ak~aAd~vl~~~~~ 741 (995)
T 3ar4_A 670 ACR------RACCFARVEPSHKSKIVEYLQS-YDEITAMTGDGVNDAPALKKAEIGIAMG-SGTAVAKTASEMVLADDNF 741 (995)
T ss_dssp HHH------HCCEEESCCSSHHHHHHHHHHT-TTCCEEEEECSGGGHHHHHHSTEEEEET-TSCHHHHHTCSEEETTCCH
T ss_pred HHH------HCCEEEEECHHHHHHHHHHHHH-CCCEEEEECCCCHHHHHHHHCCEEEEEC-CCCHHHHHHCCEEECCCCH
T ss_conf 875------3738997089999999999997-7997999838814499998789679967-8899999738899777877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf 11689998863557768787799987868999999999997511546324245888996767545678755302456653
Q 001740 895 RFLERLLLVHGHWCYRRISSMICYFFYKNIAFGFTLFFFEAYASFSGQPVYNDWFLSLYNVFFTSLPVIALGVFDQDVSA 974 (1019)
Q Consensus 895 ~~l~~lll~~Gr~~~~~~~~~i~~~~~~ni~~~~~~~~~~~~~~fs~~~~~~~~~~l~~n~i~t~lp~~~~~~~~~d~~~ 974 (1019)
..+..+ +.|||++|.|+++++.|.+++|+..+++.+++.++. ...++.++|++|+|++++.+|++++++++ .++
T Consensus 742 ~~i~~~-i~~GR~~~~~i~k~i~~~l~~Ni~~~~~~~~~~~~g---~~~pl~~~qil~~nl~~d~~p~l~l~~~~--~~~ 815 (995)
T 3ar4_A 742 STIVAA-VEEGRAIYNNMKQFIRYLISSNVGEVVCIFLTAALG---LPEALIPVQLLWVNLVTDGLPATALGFNP--PDL 815 (995)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---CCCSSCHHHHHHHHHTTTHHHHHHHTTCC--CCT
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHHHCCCC--CCH
T ss_conf 899999-999899999999999999999999999999999984---76257899999999999887777630677--775
Q ss_pred HHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5442059412633100137999999999999999999
Q 001740 975 RFCLKVGTKFLSFLLTIDKNLMVALIKTSYKSLKHSL 1011 (1019)
Q Consensus 975 ~~l~~~P~ly~~~~~~~~~~~~~~~~~~~~~~l~~~~ 1011 (1019)
+.+.++|+.++...... +.++..++.++++++..++
T Consensus 816 ~~m~~~P~~~~~~l~~~-~~~~~~~~~g~~~~~~~~~ 851 (995)
T 3ar4_A 816 DIMDRPPRSPKEPLISG-WLFFRYMAIGGYVGAATVG 851 (995)
T ss_dssp TGGGSCCCCTTCCSSCH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHH
T ss_conf 68737999976454489-9999999999999999999
No 3
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=1.00 E-value=1 Score=920.27 Aligned_cols=770 Identities=18% Similarity=0.192 Sum_probs=600.0
Q ss_pred CCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CC-------CCCCCCCHHHHHHHHHHHH
Q ss_conf 00001589997110367742435579999998788799999998750313--78-------7787421022434766551
Q 001740 48 FEASVLNYSGNYVRTTKYTLATFFPKALFEQFRRVANVYFLICAILSFTP--LS-------PYSAVSNVLPLVVVIGATM 118 (1019)
Q Consensus 48 ~~~~~~~~g~N~i~t~ky~~~~flp~~l~~qf~~~~~~~fl~~~il~~i~--~~-------~~~~~~~~~~l~~vi~~s~ 118 (1019)
.++|+.+||+|+++..+...++ +.+++||.++++++++++++++++. +. ..+.+...+++++++++++
T Consensus 78 a~~rl~~~G~N~l~~~~~~~~~---~~~~~q~~~~~~~il~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vv~i~~ 154 (1034)
T 3ixz_A 78 AAELLLRDGPNALRPPRGTPEY---VKFARQLAGGLQCLMWVAAAICLIAFAIQASEGDLTTDDNLYLALALIAVVVVTG 154 (1034)
T ss_pred HHHHHHHHCCCCCCCCCCCCHH---HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHEEEEHHH
T ss_conf 9999985099989998999889---9999998473899999999999999987403477765442056424301322799
Q ss_pred CHHHHHHHHHHHHHHHHH---CCEEEEEECCCEEEEEECCCCCCCCEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCC
Q ss_conf 188999999974359874---22278991598199973157853609983179856751899720589962999913778
Q 001740 119 GKEVLEDWRRKKQDIEVN---NRKVKVHCGEGAFDYTKWRDLKVGDVVKVEKDEFFPADLILLSSSYEEAICYVETTNLD 195 (1019)
Q Consensus 119 i~~~~~d~~r~k~~~~~n---~~~~~V~~r~g~~~~i~~~~L~vGDII~i~~ge~iPaD~ilL~~s~~~~~~~Vdts~Lt 195 (1019)
+.++++++|+.++.+.++ +.+++|+ |||++++|+|++|+|||||.|++||.||||++|+++++ +.||||+||
T Consensus 155 ~~~~~qe~ka~~al~~L~~l~~~~a~Vi-RdG~~~~I~~~eLv~GDiV~l~~Gd~VPAD~~ll~~~~----l~VdES~LT 229 (1034)
T 3ixz_A 155 CFGYYQEFKSTNIIASFKNLVPQQATVI-RDGDKFQINADQLVVGDLVEMKGGDRVPADIRILQAQG----RKVDNSSLT 229 (1034)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEE-ECCEEEEEEHHHCCCCCEEEECCCCEECCCEEEEEECC----CEEEECCCC
T ss_conf 9999999999999999762489735999-99989998889879885899857964358769997088----058833667
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCEECCCCEEECCCCEEEEEEEE
Q ss_conf 87752221001112467782122346079995159999620389999538534689888001573552288189999984
Q 001740 196 GETNLKLKQALDATSNMHEDSNFQNFKAIIRCEDPNANLYTFVGSLELEEQQYPLTPQQLLLRDSKLRNTDCIYGAVIFT 275 (1019)
Q Consensus 196 GEs~~~~K~~~~~~~~~~~~~~~~~~~~~i~~e~pn~~~~~f~Gt~~~~g~~~~l~~~n~l~rgs~l~nt~~~~gvVv~t 275 (1019)
|||.|+.|.+..... .++...|++++|+.+.+ |.++|+|++|
T Consensus 230 GES~pv~K~~~~~~~-------------------------------------~~~~~~n~~f~GT~v~~-G~~~~vVv~t 271 (1034)
T 3ixz_A 230 GESEPQTRSPECTHE-------------------------------------SPLETRNIAFFSTMCLE-GTAQGLVVNT 271 (1034)
T ss_pred CCCCCEECCCCCCCC-------------------------------------CCCCCCCCEECCEEEEE-ECCEEEEEEE
T ss_conf 887776655777665-------------------------------------63234451220406986-0424999960
Q ss_pred CCCCC---CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 55422---113458999855289998769999999999999999998641253112567533322336799987668512
Q 001740 276 GRDTK---VFQNSTGPPSKRSKVERRMDKIIYFLFGILVLMSFIGSIFFGIATREDLQDGKMKRWYLRPDDTTAYYDPKR 352 (1019)
Q Consensus 276 G~~Tk---~~~~~~~~~~k~s~le~~~~~~~~~~~~~~i~~~~i~~i~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 352 (1019)
|.+|. +..+...++.+++++++.++++...+..+.++++++.++++.++.. .|
T Consensus 272 G~~T~~GkI~~~~~~~~~~~tpl~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---------~~--------------- 327 (1034)
T 3ixz_A 272 GDRTIIGRIASLASGVENEKTPIAIEIEHFVDIIAGLAILFGATFFIVAMCIGY---------TF--------------- 327 (1034)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------HH---------------
T ss_conf 254374089986203566789189999999999999999999999999999641---------29---------------
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEEECCCCCCC
Q ss_conf 57899999999999972023340367899999998977513411112236987432465334311370399975876200
Q 001740 353 AAVAAVLHFLTALMLYGYLIPISLYVSIEIVKILQSIFINQDLHMYYEETDKPARARTSNLNEELGQVDTILSDKTGTLT 432 (1019)
Q Consensus 353 ~~~~~~~~~~~~i~l~~~~iP~sL~v~i~~~~~~~~~~i~~d~~m~~~~~~~~i~~~~~~~~e~Lg~v~~i~~DKTGTLT 432 (1019)
...+..++.+++.+||++||++++++..+++.+| +++++++|+++++|+||++++||||||||||
T Consensus 328 -----~~~~~~~i~l~v~~iPe~Lp~~vti~la~~~~rm----------ak~~~lvr~l~avE~LG~v~~IcsDKTGTLT 392 (1034)
T 3ixz_A 328 -----LRAMVFFMAIVVAYVPEGLLATVTVCLSLTAKRL----------ASKNCVVKNLEAVETLGSTSVICSDKTGTLT 392 (1034)
T ss_pred -----HHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHH----------HHCCEEECCHHHHHHHCCCCEEECCCCCCCC
T ss_conf -----9999999999882026650899999999999987----------3388286476788861587299728978723
Q ss_pred CCEEEEEEEEECCEEECCCCHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 13039999999376514882178999876239999622001001334468866673333136688998648999999997
Q 001740 433 CNSMEFIKCSIAGTSYGRGVTEVERAMARRKGSPLEEEVTEEQEDKASIKGFNFEDERIMNGSWVNEPHADVIQKFLRLL 512 (1019)
Q Consensus 433 ~n~m~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~d~~~~~~~~~~~~~~~~~~~~~~~l 512 (1019)
+|+|.+.++++++..+.....+. ..+ ..........+.++.++
T Consensus 393 ~n~m~v~~~~~~~~~~~~~~~~~-------------------------~~~------------~~~~~~~~~~~~l~~~~ 435 (1034)
T 3ixz_A 393 QNRMTVSHLWFDNHIHSADTTED-------------------------QSG------------QTFDQSSETWRALCRVL 435 (1034)
T ss_pred CCEEEEEEEEECCCCCCCCCCCC-------------------------CCC------------CCCCCCCHHHHHHHHHH
T ss_conf 68379999997795122567666-------------------------566------------55676778999999998
Q ss_pred HHCCEEECCCCCCCC--CEEEEECCCCHHHHHHHHHHCCCEEEEECCCEEEEEECCCCCCCCEEEEEEEEEEECCCCCCC
Q ss_conf 001215533248998--179980794089999999988959997528636999437877852017888967533788981
Q 001740 513 AICHTALPEVDEENG--KISYEAESPDEAAFVIAARELGFEFYERTQTSISVHELDPVTGTKVERSYSLLNVLEFSSSRK 590 (1019)
Q Consensus 513 alC~~~~~~~~~~~~--~~~y~~~sp~e~Alv~~a~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~il~~~~F~s~rk 590 (1019)
++||++....+.+.. .-....++|.|.|+++++...+.... +.+..|+++..+||+|+||
T Consensus 436 ~lc~~a~~~~~~~~~~~~~~~~~gdp~e~All~~~~~~~~~~~------------------~~~~~~~~~~~~pF~s~rk 497 (1034)
T 3ixz_A 436 TLCNRAAFKSGQDAVPVPKRIVIGDASETALLKFSELTLGNAM------------------GYRERFPKVCEIPFNSTNK 497 (1034)
T ss_pred HHHCCCEECCCCCCCCCCCCEECCCCHHHHHHHHHHHHCCCHH------------------HHHHHCCCEEEEEECCCCC
T ss_conf 8716266535767776657435549259999999998578868------------------8897486069950357772
Q ss_pred EEEEEEEECC---CEEEEEECCCCHHHHHHHHHC---------CHHHHHHHHHHHHHHHHCCCEEEEEEEEECCHHHHHH
Q ss_conf 2899998079---909999816646888987201---------2223999999999998625748899999759989999
Q 001740 591 RMSVIVRSEE---GTLLLLSKGADSVMFERLAEN---------GREFEEQTKEHINEYADAGLRTLILAYRELDEKEYKQ 658 (1019)
Q Consensus 591 rmsviv~~~~---g~~~l~~KGa~~~i~~~~~~~---------~~~~~~~~~~~l~~~~~~Glr~l~~A~k~l~~~e~~~ 658 (1019)
||+++++.++ +++.+|+||||+.|+++|+.. +++.++.+.+.+++++.+|+|+|++|||.++++++..
T Consensus 498 ~m~~v~~~~~~~~~~~~l~~KGApe~il~~c~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~G~RvLa~A~~~l~~~~~~~ 577 (1034)
T 3ixz_A 498 FQLSIHTLEDPRDPRHVLVMKGAPERVLERCSSILIKGQELPLDEQWREAFQTAYLSLGGLGERVLGFCQLYLSEKDYPP 577 (1034)
T ss_pred EEEEEEEECCCCCCCEEEEEECCHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHCCCHHHEEEEEECCHHHCCC
T ss_conf 68999983378886089999688499999737755289640199999999999999987147582368678558000432
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCC
Q ss_conf 99999998620201399999999997402908997310244358891999999986599299993898666999998756
Q 001740 659 FNEEFTEAKNSVSADREELAEEIAEKIEKNLILLGATAVEDKLQNGVPECIDKLAQAGIKLWVLTGDKMETAINIGFACS 738 (1019)
Q Consensus 659 ~~~~~~~a~~~~~~~r~~~~~~~~~~iE~dl~llG~~~ieD~lr~~v~~~I~~L~~aGIkv~ilTGD~~~ta~~ia~~~g 738 (1019)
+... +. +..+.+|+|++|+|+++++||+|++++++|+.|+++||++||+|||+..||.++|+++|
T Consensus 578 ~~~~----------~~-----~~~~~~e~~l~~lGlv~i~Dp~r~~~~~aI~~l~~aGI~vvmiTGd~~~tA~~ia~~lg 642 (1034)
T 3ixz_A 578 GYAF----------DV-----EAMNFPTSGLSFAGLVSMIDPPRATVPDAVLKCRTAGIRVIMVTGDHPITAKAIAASVG 642 (1034)
T ss_pred CCCC----------CH-----HHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCC
T ss_conf 1124----------53-----44302224867988871368870659999999998699699996997799999999869
Q ss_pred CCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHCHHHHHHHH
Q ss_conf 44379349999178875433430457999999998635687640211113576898996999935013463038899999
Q 001740 739 LLRQGMRQVIISSETPESKTLEKSEDKSAAAAALKASVLHQLIRGKELLDSSNESLGPLALIIDGKSLTYALEDDVKDLF 818 (1019)
Q Consensus 739 i~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvi~G~~l~~~l~~~~~~~~ 818 (1019)
+...+...+ ...... ... ... ..........+++|..+.....+++.+
T Consensus 643 i~~~~~~~i------------------~~~~~~--~~~------~~~----~~~~~~~~~~~~~g~~l~~~~~~~l~~-- 690 (1034)
T 3ixz_A 643 IISEGSETV------------------EDIAAR--LRV------PVD----QVNRKDARACVINGMQLKDMDPSELVE-- 690 (1034)
T ss_pred CCCCCCHHH------------------HHHHHH--HCC------CCH----HCCCCCCCEEEEECHHHHHCCHHHHHH--
T ss_conf 998872478------------------888876--176------500----025445431677167666389999999--
Q ss_pred HHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHCCCCCEEECCCCCHHHHHCCCEECCCCHH--
Q ss_conf 999720572089825920199999999720898399983997792333104844023287401342216541013011--
Q 001740 819 LELAIGCASVICCRSSPKQKALVTRLVKTKTSSTTLAIGDGANDVGMLQEADIGVGISGVEGMQAVMSSDIAIAQFRF-- 896 (1019)
Q Consensus 819 ~~~~~~~~~vv~~r~sp~qK~~iV~~lk~~~g~~vlaiGDG~ND~~ml~~AdvGIai~g~~~~~a~~~aD~vi~~f~~-- 896 (1019)
....++..+|+|++|+||..+|+.+++ .|..|+|+|||.||++||++||+||||++++...++++||+++.++++
T Consensus 691 --~~~~~~~~v~ar~~P~~K~~iv~~lq~-~g~~V~a~GDG~ND~~mLk~A~vGIAMg~ng~d~aK~aAD~Vl~~~~~~g 767 (1034)
T 3ixz_A 691 --ALRTHPEMVFARTSPQQKLVIVESCQR-LGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDAAKNAADMILLDDNFAS 767 (1034)
T ss_pred --HHHHCCCEEEEECCHHHHHHHHHHHHH-CCCEEEEECCCHHHHHHHHHCCEEEEECCCCCHHHHHHCCEEECCCCCHH
T ss_conf --987378269996698999999999997-69999998795776999997893298077567999985499966688339
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 68999886355776878779998786899999999999751154632424588899676754567875530245665354
Q 001740 897 LERLLLVHGHWCYRRISSMICYFFYKNIAFGFTLFFFEAYASFSGQPVYNDWFLSLYNVFFTSLPVIALGVFDQDVSARF 976 (1019)
Q Consensus 897 l~~lll~~Gr~~~~~~~~~i~~~~~~ni~~~~~~~~~~~~~~fs~~~~~~~~~~l~~n~i~t~lp~~~~~~~~~d~~~~~ 976 (1019)
+..+ +.|||++|.|+++++.|.+++|+..+++.+++.++. ...++.++|++|.|++++.+|+++++. ++++++.
T Consensus 768 I~~a-i~~GR~i~~ni~k~i~~~l~~ni~~~~~~~~~~~~~---~~~pl~~~qiL~inl~~d~~palal~~--e~~~~~~ 841 (1034)
T 3ixz_A 768 IVTG-VEQGRLIFDNLKKSIAYTLTKNIPELTPYLIYITVS---VPLPLGCITILFIELCTDIFPSVSLAY--EKAESDI 841 (1034)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCHHH
T ss_conf 9999-999889999999999999999999999999999982---146689999999999988888888516--8897326
Q ss_pred HHHCCCCHH-HHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 420594126-3310013799999999999999999976
Q 001740 977 CLKVGTKFL-SFLLTIDKNLMVALIKTSYKSLKHSLFI 1013 (1019)
Q Consensus 977 l~~~P~ly~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 1013 (1019)
|.+.|+..+ .............+..++++++..++..
T Consensus 842 m~~~Pr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~ 879 (1034)
T 3ixz_A 842 MHLRPRNPKRDRLVNEPLAAYSYFQIGAIQSFAGFTDY 879 (1034)
T ss_pred HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 64799897534455788999999999999999999999
No 4
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Probab=1.00 E-value=1 Score=824.76 Aligned_cols=649 Identities=18% Similarity=0.189 Sum_probs=514.7
Q ss_pred CCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHH
Q ss_conf 00001589997110367742435579999998788799999998750313787787421022434766551188999999
Q 001740 48 FEASVLNYSGNYVRTTKYTLATFFPKALFEQFRRVANVYFLICAILSFTPLSPYSAVSNVLPLVVVIGATMGKEVLEDWR 127 (1019)
Q Consensus 48 ~~~~~~~~g~N~i~t~ky~~~~flp~~l~~qf~~~~~~~fl~~~il~~i~~~~~~~~~~~~~l~~vi~~s~i~~~~~d~~ 127 (1019)
..+|+.+||+|+++.+++++| +.|++||+.+++++++++++++++ .+.+.....++++++++.+.+++++++
T Consensus 93 a~~r~~~~G~N~l~~~~~~~~----~~~l~~f~~~~~~ll~~aai~s~~----~g~~~~~~~i~~vv~i~~~i~~~qe~~ 164 (920)
T 1mhs_A 93 VVQRRRKYGLNQMKEEKENHF----LKFLGFFVGPIQFVMEGAAVLAAG----LEDWVDFGVICGLLLLNAVVGFVQEFQ 164 (920)
T ss_dssp HHHHHHHTSSSSCCCCCCSSH----HHHTHHHHHHHHHHHHHHHHHCTT----CSCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999639981588888899----999999987999999999999999----976899999999999999999999999
Q ss_pred HHHHHHHHH---CCEEEEEECCCEEEEEECCCCCCCCEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEC
Q ss_conf 974359874---22278991598199973157853609983179856751899720589962999913778877522210
Q 001740 128 RKKQDIEVN---NRKVKVHCGEGAFDYTKWRDLKVGDVVKVEKDEFFPADLILLSSSYEEAICYVETTNLDGETNLKLKQ 204 (1019)
Q Consensus 128 r~k~~~~~n---~~~~~V~~r~g~~~~i~~~~L~vGDII~i~~ge~iPaD~ilL~~s~~~~~~~Vdts~LtGEs~~~~K~ 204 (1019)
..++.+.++ +.+++|+ |||++++|++++|+|||||.|++||.||||++|++|++. +.||||.|||||.|+.|.
T Consensus 165 a~~a~~~L~~l~~~~a~V~-RdG~~~~I~~~eLv~GDiV~l~~Gd~VPaDg~ll~g~~~---l~VDES~LTGES~PV~K~ 240 (920)
T 1mhs_A 165 AGSIVDELKKTLALKAVVL-RDGTLKEIEAPEVVPGDILQVEEGTIIPADGRIVTDDAF---LQVDQSALTGESLAVDKH 240 (920)
T ss_dssp HHHHHHTTTTCCCSSCEEE-CSSSEEECCTTTSCTTSEEEECTTCBCSSEEEEEEESSC---CEEBCTTTSSCCCCEECC
T ss_pred HHHHHHHHHCCCCCEEEEE-ECCEEEEEEHHHCCCCCEEEECCCCCCCCCEEEEECCCE---EEEECCCCCCCCCCEEEC
T ss_conf 9999998633599879999-899899989899588978996779733665699945722---320222247888646934
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCEECCCCEEECCCCEEEEEEEECCCCCCCCC
Q ss_conf 01112467782122346079995159999620389999538534689888001573552288189999984554221134
Q 001740 205 ALDATSNMHEDSNFQNFKAIIRCEDPNANLYTFVGSLELEEQQYPLTPQQLLLRDSKLRNTDCIYGAVIFTGRDTKVFQN 284 (1019)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~i~~e~pn~~~~~f~Gt~~~~g~~~~l~~~n~l~rgs~l~nt~~~~gvVv~tG~~Tk~~~~ 284 (1019)
+++.. |+||.+.+|. +.++|++||.+|++++.
T Consensus 241 ~gd~v---------------------------~sGT~v~~G~---------------------~~~~V~~tG~~T~~g~I 272 (920)
T 1mhs_A 241 KGDQV---------------------------FASSAVKRGE---------------------AFVVITATGDNTFVGRA 272 (920)
T ss_dssp SSCEE---------------------------CSCBCCSCCC---------------------EEEEEEECSTTCSTTTT
T ss_pred CCCEE---------------------------ECCCEEECCE---------------------EEEEEEEECCCCHHHHH
T ss_conf 79863---------------------------0376695135---------------------99999995776788899
Q ss_pred ---CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf ---58999855289998769999999999999999998641253112567533322336799987668512578999999
Q 001740 285 ---STGPPSKRSKVERRMDKIIYFLFGILVLMSFIGSIFFGIATREDLQDGKMKRWYLRPDDTTAYYDPKRAAVAAVLHF 361 (1019)
Q Consensus 285 ---~~~~~~k~s~le~~~~~~~~~~~~~~i~~~~i~~i~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 361 (1019)
...++.+++++++.++++..+++++.++++++.++.+.+. . . . ....+
T Consensus 273 ~~lv~~a~~~~~~l~~~~~~i~~~l~~~~~~~~~i~~~~~~~~---~-~-----~--------------------~~~~l 323 (920)
T 1mhs_A 273 AALVNAASGGSGHFTEVLNGIGTILLILVIFTLLIVWVSSFYR---S-N-----P--------------------IVQIL 323 (920)
T ss_dssp TSSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT---T-C-----C--------------------HHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---C-C-----C--------------------HHHHH
T ss_conf 8877642467764999999999999999999999999998846---8-8-----6--------------------99999
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEEECCCCCCCCCEEEEEEE
Q ss_conf 99999972023340367899999998977513411112236987432465334311370399975876200130399999
Q 001740 362 LTALMLYGYLIPISLYVSIEIVKILQSIFINQDLHMYYEETDKPARARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKC 441 (1019)
Q Consensus 362 ~~~i~l~~~~iP~sL~v~i~~~~~~~~~~i~~d~~m~~~~~~~~i~~~~~~~~e~Lg~v~~i~~DKTGTLT~n~m~~~~~ 441 (1019)
..++.+++.+||++||++++++...++.++ +++++++|+++.+|.||++++||||||||||+|+|.+.++
T Consensus 324 ~~av~llV~aiP~aLp~~vti~la~g~~~m----------ak~~ilvk~~~aiE~Lg~v~vIc~DKTGTLT~n~m~v~~~ 393 (920)
T 1mhs_A 324 EFTLAITIIGVPVGLPAVVTTTMAVGAAYL----------AKKKAIVQKLSAIESLAGVEILCSDKTGTLTKNKLSLHDP 393 (920)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHHH----------HHTTCCCCCTTTHHHHHTCCEEEEETBTTTBSSCSCCCCC
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHH----------HHCCEEEECCCHHHHHCCCCEEEECCCCCCCCCCEEEEEE
T ss_conf 999999987676037777899999999999----------8688387057135554367689977888755553169998
Q ss_pred EECCEEECCCCHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHCCEEECC
Q ss_conf 99376514882178999876239999622001001334468866673333136688998648999999997001215533
Q 001740 442 SIAGTSYGRGVTEVERAMARRKGSPLEEEVTEEQEDKASIKGFNFEDERIMNGSWVNEPHADVIQKFLRLLAICHTALPE 521 (1019)
Q Consensus 442 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~d~~~~~~~~~~~~~~~~~~~~~~~lalC~~~~~~ 521 (1019)
+..+. + .+ .+++.+.++|+....
T Consensus 394 ~~~~g-~--------------------------------------------------~~-----~~ll~~a~l~~~~~~- 416 (920)
T 1mhs_A 394 YTVAG-V--------------------------------------------------DP-----EDLMLTACLAASRKK- 416 (920)
T ss_dssp BCCSC-C--------------------------------------------------CC-----THHHHHHHHSCCCSS-
T ss_pred EECCC-C--------------------------------------------------CH-----HHHHHHHHHHCCCCC-
T ss_conf 50699-8--------------------------------------------------98-----999999998547766-
Q ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHCCCEEEEECCCEEEEEECCCCCCCCEEEEEEEEEEECCCCCCCEEEEEEEECCC
Q ss_conf 24899817998079408999999998895999752863699943787785201788896753378898128999980799
Q 001740 522 VDEENGKISYEAESPDEAAFVIAARELGFEFYERTQTSISVHELDPVTGTKVERSYSLLNVLEFSSSRKRMSVIVRSEEG 601 (1019)
Q Consensus 522 ~~~~~~~~~y~~~sp~e~Alv~~a~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~il~~~~F~s~rkrmsviv~~~~g 601 (1019)
. .+||.|.|+++++++.+... .....|++++.+||+|.||||+++++.++|
T Consensus 417 ----~------~~~P~e~Al~~~~~~~~~~~-------------------~~~~~~~~~~~~pF~s~~k~ms~iv~~~~g 467 (920)
T 1mhs_A 417 ----K------GIDAIDKAFLKSLKYYPRAK-------------------SVLSKYKVLQFHPFDPVSKKVVAVVESPQG 467 (920)
T ss_dssp ----C------SCCSHHHHHHHHHHHSSSCC-------------------GGGSCCCEEEEEEEETTTTEEEEEECCSSS
T ss_pred ----C------CCCHHHHHHHHHHHHCCCCH-------------------HHCCCCCEEEEEECCCCCCEEEEEEEECCC
T ss_conf ----6------89858999999999646310-------------------101355335786116778859999996799
Q ss_pred EEEEEECCCCHHHHHHHHHC---CHHHHHHHHHHHHHHHHCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 09999816646888987201---222399999999999862574889999975998999999999998620201399999
Q 001740 602 TLLLLSKGADSVMFERLAEN---GREFEEQTKEHINEYADAGLRTLILAYRELDEKEYKQFNEEFTEAKNSVSADREELA 678 (1019)
Q Consensus 602 ~~~l~~KGa~~~i~~~~~~~---~~~~~~~~~~~l~~~~~~Glr~l~~A~k~l~~~e~~~~~~~~~~a~~~~~~~r~~~~ 678 (1019)
+.++|+||||+.|+++|... +++.++.+.+++++++.+|+|+|++|+|..
T Consensus 468 ~~~~~~KGape~il~~c~~~~~~~~~~~~~~~~~~~~~a~~G~RvL~vA~~~~--------------------------- 520 (920)
T 1mhs_A 468 ERITCVKGAPLFVLKTVEEDHPIPEEVDQAYKNKVAEFATRGFRSLGVARKRG--------------------------- 520 (920)
T ss_dssp SCEEEEEECHHHHHHHCCCSSCCCHHHHHHHHHHHHHHHTSSCCCCEECCCSS---------------------------
T ss_pred CEEEEEECCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECC---------------------------
T ss_conf 18999908799999861356789878899899999999867997999998326---------------------------
Q ss_pred HHHHHHHCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 99999740290899731024435889199999998659929999389866699999875644379349999178875433
Q 001740 679 EEIAEKIEKNLILLGATAVEDKLQNGVPECIDKLAQAGIKLWVLTGDKMETAINIGFACSLLRQGMRQVIISSETPESKT 758 (1019)
Q Consensus 679 ~~~~~~iE~dl~llG~~~ieD~lr~~v~~~I~~L~~aGIkv~ilTGD~~~ta~~ia~~~gi~~~~~~~i~i~~~~~~~~~ 758 (1019)
|.+++|+|+++++|++|++++++|+.|+++||++||+|||+..||.+||+++||..... +... ..
T Consensus 521 -------e~~l~~lGli~i~Dp~R~ea~~aI~~l~~aGI~v~MiTGD~~~TA~aIA~~lGI~~~~~-----~~~~---~~ 585 (920)
T 1mhs_A 521 -------EGSWEILGIMPCMDPPRHDTYKTVCEAKTLGLSIKMLTGDAVGIARETSRQLGLGTNIY-----NAER---LG 585 (920)
T ss_dssp -------SCSCCCCBBCCCCCCCCHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHTSSCSCC-----CSSS---SS
T ss_pred -------CCCCEEEEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCCC-----CCCC---EE
T ss_conf -------65307889999734321017999999862574499983897899999999849996546-----7541---24
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHCHHHHHHHHHHHHHCCCCEEEEECCCCCH
Q ss_conf 43045799999999863568764021111357689899699993501346303889999999972057208982592019
Q 001740 759 LEKSEDKSAAAAALKASVLHQLIRGKELLDSSNESLGPLALIIDGKSLTYALEDDVKDLFLELAIGCASVICCRSSPKQK 838 (1019)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvi~G~~l~~~l~~~~~~~~~~~~~~~~~vv~~r~sp~qK 838 (1019)
+. +.+ .+++.++.... .+..+|+|++|+||
T Consensus 586 ~~----------------------g~~--------------~~~~~el~~~~--------------~~~~V~arv~P~~K 615 (920)
T 1mhs_A 586 LG----------------------GGG--------------DMPGSEVYDFV--------------EAADGFAEVFPQHK 615 (920)
T ss_dssp SC----------------------BCC--------------CGGGGGGGTTT--------------TTTSCEESCCSTHH
T ss_pred EC----------------------CCC--------------CCCHHHHHHHH--------------HHCEEEEEECHHHH
T ss_conf 22----------------------765--------------58989999877--------------51819998379999
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCHHHHHCCCCCEEECCCCCHHHHHCCCEECCC--CHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999720898399983997792333104844023287401342216541013--01168999886355776878779
Q 001740 839 ALVTRLVKTKTSSTTLAIGDGANDVGMLQEADIGVGISGVEGMQAVMSSDIAIAQ--FRFLERLLLVHGHWCYRRISSMI 916 (1019)
Q Consensus 839 ~~iV~~lk~~~g~~vlaiGDG~ND~~ml~~AdvGIai~g~~~~~a~~~aD~vi~~--f~~l~~lll~~Gr~~~~~~~~~i 916 (1019)
..+|+.+|+ .|+.|+|+|||.||+|||++||+||||+ +....|+++||+++.+ |..+..+ +.+||++|+|+++++
T Consensus 616 ~~iV~~Lq~-~g~~Vam~GDGvNDapaLk~AdvGIAmg-~gtd~ak~aADiVl~~~~~~~I~~a-i~~gR~~~~ni~k~i 692 (920)
T 1mhs_A 616 YNVVEILQQ-RGYLVAMTGDGVNDAPSLKKADTGIAVE-GSSDAARSAADIVFLAPGLGAIIDA-LKTSRQIFHRMYAYV 692 (920)
T ss_dssp HHHHHHHHT-TTCCCEECCCCGGGHHHHHHSSEEEEET-TSCHHHHHSSSEEESSCCSHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-CCCEEEEECCCCCCHHHHHHCCCCCCCC-CCCHHHHHHCCEEECCCCHHHHHHH-HHHHHHHHHHHHHHH
T ss_conf 999999996-7996999828810099998578674056-4339999846807767977789999-999999999999987
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCHHH
Q ss_conf 9987868999999999997511546324245888996767545678755302456653544205941263
Q 001740 917 CYFFYKNIAFGFTLFFFEAYASFSGQPVYNDWFLSLYNVFFTSLPVIALGVFDQDVSARFCLKVGTKFLS 986 (1019)
Q Consensus 917 ~~~~~~ni~~~~~~~~~~~~~~fs~~~~~~~~~~l~~n~i~t~lp~~~~~~~~~d~~~~~l~~~P~ly~~ 986 (1019)
.|.++.|+.+....+++..+.++ + +++.+++|.|++.+. |++++++.+.+.+ +.|+..+.
T Consensus 693 ~~~l~~n~~~~~~~~~~~~~~~~---~-l~~~~il~~~l~~d~-~~lal~~e~~~~~-----~~P~~~~~ 752 (920)
T 1mhs_A 693 VYRIALSIHLEIFLGLWIAILNR---S-LNIELVVFIAIFADV-ATLAIAYDNAPYS-----QTPVKWNL 752 (920)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCSC---C-CCHHHHHHHHHHHTT-HHHHCCCCCSGGG-----GSCCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC---C-CCHHHHHHHHHHHHH-HHHHHCCCCCCCC-----CCCCCCHH
T ss_conf 88979999999999999999961---6-879999999999877-7665135676434-----58878408
No 5
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Probab=1.00 E-value=1 Score=812.15 Aligned_cols=644 Identities=18% Similarity=0.225 Sum_probs=497.9
Q ss_pred CCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---CCCCCCCHHHHHHHHHHHHCHHHH
Q ss_conf 10000158999711036774243557999999878879999999875031378---778742102243476655118899
Q 001740 47 SFEASVLNYSGNYVRTTKYTLATFFPKALFEQFRRVANVYFLICAILSFTPLS---PYSAVSNVLPLVVVIGATMGKEVL 123 (1019)
Q Consensus 47 ~~~~~~~~~g~N~i~t~ky~~~~flp~~l~~qf~~~~~~~fl~~~il~~i~~~---~~~~~~~~~~l~~vi~~s~i~~~~ 123 (1019)
+.++|+++||+|+++.+++++| +.|++||.+|++++++++++++++... ....|...+.++++++++.+.+++
T Consensus 37 e~~~r~~~~G~N~l~~~~~~~~----~~~l~~~~~p~~~il~~aaiis~~l~~~~~~~~~~~~~~~I~~~v~i~~~l~~~ 112 (885)
T 3b8c_A 37 EGEDRIQIFGPNKLEEKKESKL----LKFLGFMWNPLSWVMEMAAIMAIALANGDGRPPDWQDFVGIICLLVINSTISFI 112 (885)
T ss_dssp HHHHHSSSCCSCCTTTTCCCTT----SSTTSCCCGGGSSHHHHHHHGGGGSSCCTTSCSCCTTHHHHHHHTTTTTTTTTT
T ss_pred HHHHHHHHCCCCCCCCCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999998519971588788799----999999999999999999999999970456630188999999999999999999
Q ss_pred HHHHHHHHHHHH---HCCEEEEEECCCEEEEEECCCCCCCCEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCC
Q ss_conf 999997435987---42227899159819997315785360998317985675189972058996299991377887752
Q 001740 124 EDWRRKKQDIEV---NNRKVKVHCGEGAFDYTKWRDLKVGDVVKVEKDEFFPADLILLSSSYEEAICYVETTNLDGETNL 200 (1019)
Q Consensus 124 ~d~~r~k~~~~~---n~~~~~V~~r~g~~~~i~~~~L~vGDII~i~~ge~iPaD~ilL~~s~~~~~~~Vdts~LtGEs~~ 200 (1019)
+++|..++.+.+ .+.+++|+ |||++++|++++|+|||||.|++||.||||++|++|++ +.||||.|||||.|
T Consensus 113 qe~ka~~al~~L~~~~~~~a~V~-RdG~~~~I~~~~Lv~GDiV~l~~Gd~IPaDg~ll~g~~----l~VdES~LTGES~P 187 (885)
T 3b8c_A 113 EENNAGNAAAALMAGLAPKTKVL-RDGKWSEQEAAILVPGDIVSIKLGDIIPADARLLEGDP----LKVDQSALTGESLP 187 (885)
T ss_dssp TTTTTTTHHHHTTTSCSCCCCCC-CSSCSCCCCTTTTCTTSBCCCCSSCCCSSCCCCCCSSC----BCCCCCSTTCCSSC
T ss_pred HHHHHHHHHHHHHCCCCCEEEEE-ECCEEEEEEHHHCCCCCEEEECCCCEEEECEEEEECCC----CCCCCCCCCCCCCC
T ss_conf 99999999999733499869999-99989998989979897899889999930359997675----40034446888864
Q ss_pred EEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCEECCCCEEECCCCEEEEEEEECCCCC
Q ss_conf 22100111246778212234607999515999962038999953853468988800157355228818999998455422
Q 001740 201 KLKQALDATSNMHEDSNFQNFKAIIRCEDPNANLYTFVGSLELEEQQYPLTPQQLLLRDSKLRNTDCIYGAVIFTGRDTK 280 (1019)
Q Consensus 201 ~~K~~~~~~~~~~~~~~~~~~~~~i~~e~pn~~~~~f~Gt~~~~g~~~~l~~~n~l~rgs~l~nt~~~~gvVv~tG~~Tk 280 (1019)
+.|.+++.. |+||.+.+|. ++++|++||.+|.
T Consensus 188 v~K~~g~~v---------------------------~~GT~v~~G~---------------------~~~~V~~tG~~T~ 219 (885)
T 3b8c_A 188 VTKHPGQEV---------------------------FSGSTCKQGE---------------------IEAVVIATGVHTF 219 (885)
T ss_dssp CCBSSCCCC---------------------------CSCCCCCSCC---------------------CCCBCCSCTTTTT
T ss_pred EEECCCCCC---------------------------CCCEEEEEEE---------------------EEEEEEECCCCCH
T ss_conf 583489830---------------------------2675995117---------------------9999997573019
Q ss_pred CCCCCC--CCCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 113458--9998552899987699999999-9999999999864125311256753332233679998766851257899
Q 001740 281 VFQNST--GPPSKRSKVERRMDKIIYFLFG-ILVLMSFIGSIFFGIATREDLQDGKMKRWYLRPDDTTAYYDPKRAAVAA 357 (1019)
Q Consensus 281 ~~~~~~--~~~~k~s~le~~~~~~~~~~~~-~~i~~~~i~~i~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 357 (1019)
+++... ....+++++++.++++..+++. +.+.++++.++.+.+.. ..|.
T Consensus 220 ~g~i~~lv~~~~~~~~lq~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~------------------- 271 (885)
T 3b8c_A 220 FGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAIGMVIEIIVMYPIQR---------RKYR------------------- 271 (885)
T ss_dssp STTCCCSCCSCSCCSTTTTTTHHHHHHHHHHHHHHHHHHSTTTTTTTC---------SCST-------------------
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------CCHH-------------------
T ss_conf 999999986464468499999999999999999999999999999806---------8699-------------------
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEEECCCCCCCCCEEE
Q ss_conf 99999999997202334036789999999897751341111223698743246533431137039997587620013039
Q 001740 358 VLHFLTALMLYGYLIPISLYVSIEIVKILQSIFINQDLHMYYEETDKPARARTSNLNEELGQVDTILSDKTGTLTCNSME 437 (1019)
Q Consensus 358 ~~~~~~~i~l~~~~iP~sL~v~i~~~~~~~~~~i~~d~~m~~~~~~~~i~~~~~~~~e~Lg~v~~i~~DKTGTLT~n~m~ 437 (1019)
..+..++.+++.+||++||+++++...+++.++ +++++++|+++.+|.||++++||||||||||+|+|+
T Consensus 272 -~~~~~~v~llv~aiP~aLp~~vti~la~g~~r~----------ak~~ilvk~~~aiE~Lg~v~~Ic~DKTGTLT~n~m~ 340 (885)
T 3b8c_A 272 -DGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRL----------SQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLS 340 (885)
T ss_dssp -THHHHHHHHTTTTCCSSTTTHHHHTTTHHHHHH----------TTTSCCCSSGGGHHHHTTCCCCEEECCCCCSCCCCC
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHCCEEECCCHHHHHHHCCCEEEECCCCCCCCCCEE
T ss_conf -999999999999703689999999999999999----------719869689518889767998998799876168527
Q ss_pred EEEEEECCEEECCCCHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHCCE
Q ss_conf 99999937651488217899987623999962200100133446886667333313668899864899999999700121
Q 001740 438 FIKCSIAGTSYGRGVTEVERAMARRKGSPLEEEVTEEQEDKASIKGFNFEDERIMNGSWVNEPHADVIQKFLRLLAICHT 517 (1019)
Q Consensus 438 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~d~~~~~~~~~~~~~~~~~~~~~~~lalC~~ 517 (1019)
+.++.+. .++.+ ...++++...++|+.
T Consensus 341 v~~~~~~--~~~~~---------------------------------------------------~~~~~ll~~aa~~~~ 367 (885)
T 3b8c_A 341 VDKNLVE--VFCKG---------------------------------------------------VEKDQVLLFAAMASR 367 (885)
T ss_dssp CCSCCCC--SSCSS---------------------------------------------------TTHHHHHHHHHHHCC
T ss_pred EEEEEEE--CCCCC---------------------------------------------------CCHHHHHHHHHHHHC
T ss_conf 9987775--15899---------------------------------------------------999999999999727
Q ss_pred EECCCCCCCCCEEEEECCCCHHHHHHHHHHCCCEEEEECCCEEEEEECCCCCCCCEEEEEEEEEEECCCCCCCEEEEEEE
Q ss_conf 55332489981799807940899999999889599975286369994378778520178889675337889812899998
Q 001740 518 ALPEVDEENGKISYEAESPDEAAFVIAARELGFEFYERTQTSISVHELDPVTGTKVERSYSLLNVLEFSSSRKRMSVIVR 597 (1019)
Q Consensus 518 ~~~~~~~~~~~~~y~~~sp~e~Alv~~a~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~il~~~~F~s~rkrmsviv~ 597 (1019)
.. ++||.|.|+++++.+. . . ....+++++.+||+|.||||+++++
T Consensus 368 ~~-------------~~~p~~~Al~~~~~~~---------~--------~-----~~~~~~~~~~~pF~s~~k~~sv~~~ 412 (885)
T 3b8c_A 368 VE-------------NQDAIDAAMVGMLADP---------K--------E-----ARAGIREVHFLPFNPVDKRTALTYI 412 (885)
T ss_dssp SS-------------SCCSHHHHHHHTTCCT---------T--------C-----CCCSSCCBCCCCCCTTTCCCCCBBC
T ss_pred CC-------------CCCCHHHHHHHHHHCH---------H--------H-----HHHCCCEEECCCCCCCCCEEEEEEE
T ss_conf 88-------------9991589999986463---------6--------5-----7624832201357852256899998
Q ss_pred ECCCEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 07990999981664688898720122239999999999986257488999997599899999999999862020139999
Q 001740 598 SEEGTLLLLSKGADSVMFERLAENGREFEEQTKEHINEYADAGLRTLILAYRELDEKEYKQFNEEFTEAKNSVSADREEL 677 (1019)
Q Consensus 598 ~~~g~~~l~~KGa~~~i~~~~~~~~~~~~~~~~~~l~~~~~~Glr~l~~A~k~l~~~e~~~~~~~~~~a~~~~~~~r~~~ 677 (1019)
..+|+.++++||||+.|+++|... ...++.+.+.+++++.+|+|++++|+|++++.+
T Consensus 413 ~~~g~~~~~~KGa~e~il~~c~~~-~~~~~~~~~~~~~~a~~G~rvl~vA~~~~~~~~---------------------- 469 (885)
T 3b8c_A 413 DGSGNWHRVSKGAPEQILELAKAS-NDLSKKVLSIIDKYAERGLRSLAVARQVVPEKT---------------------- 469 (885)
T ss_dssp SSSSCBCBCCCCSGGGTSSSSCCC-STTTTTHHHHHHHHTTTTCEEEEECCBCCCSSS----------------------
T ss_pred ECCCCEEEEEECCHHHHHHHCCCC-HHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCC----------------------
T ss_conf 048968999948899999764586-445799999999998579869999994466433----------------------
Q ss_pred HHHHHHHHCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCC
Q ss_conf 99999974029089973102443588919999999865992999938986669999987564437934999917887543
Q 001740 678 AEEIAEKIEKNLILLGATAVEDKLQNGVPECIDKLAQAGIKLWVLTGDKMETAINIGFACSLLRQGMRQVIISSETPESK 757 (1019)
Q Consensus 678 ~~~~~~~iE~dl~llG~~~ieD~lr~~v~~~I~~L~~aGIkv~ilTGD~~~ta~~ia~~~gi~~~~~~~i~i~~~~~~~~ 757 (1019)
.+..|.+++|+|+++++|++|++++++|+.|+++||++||+|||+..||.++|+++||..+.. +..
T Consensus 470 ----~~~~e~~l~~lGli~i~Dp~R~~a~~aI~~l~~aGI~v~MiTGD~~~tA~~iA~~lGi~~~~~-----~~~----- 535 (885)
T 3b8c_A 470 ----KESPGAPWEFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMY-----PSS----- 535 (885)
T ss_dssp ----SSCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHTTCCCEEEESSCHHHHTHHHHTTTCTTCCS-----TTS-----
T ss_pred ----CCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHCCCCCCC-----CCC-----
T ss_conf ----111356757999999606661208999999997699689993998699999999809764667-----751-----
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHCHH-HHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 3430457999999998635687640211113576898996999935013463038-899999999720572089825920
Q 001740 758 TLEKSEDKSAAAAALKASVLHQLIRGKELLDSSNESLGPLALIIDGKSLTYALED-DVKDLFLELAIGCASVICCRSSPK 836 (1019)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvi~G~~l~~~l~~-~~~~~~~~~~~~~~~vv~~r~sp~ 836 (1019)
++.|.+++..+.+ ++.+ +.. +..+|+|++|+
T Consensus 536 ------------------------------------------~l~g~~~~~~~~~~~l~~----~~~--~~~v~arv~P~ 567 (885)
T 3b8c_A 536 ------------------------------------------ALLGTHKDANLASIPVEE----LIE--KADGFAGVFPE 567 (885)
T ss_dssp ------------------------------------------SCCBGGGGTTSCCSCHHH----HHH--TSCCEECCCHH
T ss_pred ------------------------------------------EEECCCCCCCCCHHHHHH----HHH--HCCEEEEECHH
T ss_conf ------------------------------------------445553122246357999----986--38689887899
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCCCCHHHHHCCCCCEEECCCCCHHHHHCCCEECCCCHH--HHHHHHHHHHHHHHHHHH
Q ss_conf 199999999720898399983997792333104844023287401342216541013011--689998863557768787
Q 001740 837 QKALVTRLVKTKTSSTTLAIGDGANDVGMLQEADIGVGISGVEGMQAVMSSDIAIAQFRF--LERLLLVHGHWCYRRISS 914 (1019)
Q Consensus 837 qK~~iV~~lk~~~g~~vlaiGDG~ND~~ml~~AdvGIai~g~~~~~a~~~aD~vi~~f~~--l~~lll~~Gr~~~~~~~~ 914 (1019)
||..+|+.+|+ .|+.|+|+|||.||+|||++||+||||+ +....|+++||+++.++++ +..+ +.+||++|+|+++
T Consensus 568 ~K~~iV~~lq~-~g~~Vam~GDGvNDapaLk~AdvGIAmg-~gtd~ak~aADivl~~~~~~~I~~a-i~~gR~~~~ni~~ 644 (885)
T 3b8c_A 568 HKYEIVKKLQE-RKHIVGMTGDGVNDAPALKKADIGIAVA-DATDAARGASDIVLTEPGLSVIISA-VLTSRAIFQRMKN 644 (885)
T ss_dssp HHHHHHHHHHH-TTCCCCBCCCSSTTHHHHHHSSSCCCCS-SSHHHHGGGCSSCCSSCSHHHHTHH-HHTHHHHHHHHHH
T ss_pred HHHHHHHHHHH-CCCEEEEECCCCHHHHHHHHCCEEEEEC-CCCHHHHHHCCEEECCCCHHHHHHH-HHHHHHHHHHHHH
T ss_conf 99999999997-7996999759812299998699759957-7129999843401335766689999-9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 79998786899999999999751154632424588899676754567875530
Q 001740 915 MICYFFYKNIAFGFTLFFFEAYASFSGQPVYNDWFLSLYNVFFTSLPVIALGV 967 (1019)
Q Consensus 915 ~i~~~~~~ni~~~~~~~~~~~~~~fs~~~~~~~~~~l~~n~i~t~lp~~~~~~ 967 (1019)
++.|.+..|+..++..++..+ ++. .++++++++|.|++.+..+ ++++.
T Consensus 645 ~i~~~l~~n~~~~~~~~~~~~--~~~--~~l~p~~il~i~l~~d~~~-l~l~~ 692 (885)
T 3b8c_A 645 YTIYAVSITIRIVFGFMLIAL--IWE--FDFSAFMVLIIAILNDGTI-MTISK 692 (885)
T ss_dssp HHHHHHHHTTTTTSTTHHHHS--SCS--SCSCHHHHHHHHHHHHTTT-CCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH--CCC--CCCCHHHHHHHHHHHHHHH-HHHCC
T ss_conf 999999999999999999997--038--6758899999999987778-74046
No 6
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}
Probab=1.00 E-value=1 Score=609.74 Aligned_cols=495 Identities=20% Similarity=0.258 Sum_probs=404.7
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHH------CCEEEEEECCCEEEEEECCCCCCCCEEEECCCCCCCCCEEEEEECCC
Q ss_conf 434766551188999999974359874------22278991598199973157853609983179856751899720589
Q 001740 110 LVVVIGATMGKEVLEDWRRKKQDIEVN------NRKVKVHCGEGAFDYTKWRDLKVGDVVKVEKDEFFPADLILLSSSYE 183 (1019)
Q Consensus 110 l~~vi~~s~i~~~~~d~~r~k~~~~~n------~~~~~V~~r~g~~~~i~~~~L~vGDII~i~~ge~iPaD~ilL~~s~~ 183 (1019)
..+++++..+..++|.+.++++.+.++ +.++++++|||++++|++++|+|||+|.|++||.||||+++++|+
T Consensus 191 a~~ii~~~llg~~le~~a~~~~~~ai~~L~~l~p~~a~vv~~dg~~~~v~~~~l~~GDiv~v~~Ge~IPaDg~vl~G~-- 268 (736)
T 3rfu_A 191 AAVITTLVLLGQVLELKAREQTGSAIRALLKLVPESAHRIKEDGSEEEVSLDNVAVGDLLRVRPGEKIPVDGEVQEGR-- 268 (736)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCSSHHHHHTCCCCCEEEEEETTEEEEEEETTTCCTTCEECCCSSEECCSCEEECSSC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEEHHHCCCCCEEEECCCCCCCCCEEEEECC--
T ss_conf 999999999999999999999999999988339988999952998999877668989889987997515637999786--
Q ss_pred CCEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCEECCCCEEE
Q ss_conf 96299991377887752221001112467782122346079995159999620389999538534689888001573552
Q 001740 184 EAICYVETTNLDGETNLKLKQALDATSNMHEDSNFQNFKAIIRCEDPNANLYTFVGSLELEEQQYPLTPQQLLLRDSKLR 263 (1019)
Q Consensus 184 ~~~~~Vdts~LtGEs~~~~K~~~~~~~~~~~~~~~~~~~~~i~~e~pn~~~~~f~Gt~~~~g~~~~l~~~n~l~rgs~l~ 263 (1019)
++||||+|||||.|+.|.+++.. |+||++.+|.
T Consensus 269 ---~~VDES~LTGES~Pv~K~~gd~v---------------------------~~Gt~~~~G~----------------- 301 (736)
T 3rfu_A 269 ---SFVDESMVTGEPIPVAKEASAKV---------------------------IGATINQTGS----------------- 301 (736)
T ss_dssp ---EEEECSSSTTCSSCEEECTTCEE---------------------------CTTCEEESCC-----------------
T ss_pred ---EEEEECCCCCCCCCEEECCCCCC---------------------------CCCEEECCCE-----------------
T ss_conf ---67651235786142783168867---------------------------7864861450-----------------
Q ss_pred CCCCEEEEEEEECCCC---CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCC
Q ss_conf 2881899999845542---2113458999855289998769999999999999999998641253112567533322336
Q 001740 264 NTDCIYGAVIFTGRDT---KVFQNSTGPPSKRSKVERRMDKIIYFLFGILVLMSFIGSIFFGIATREDLQDGKMKRWYLR 340 (1019)
Q Consensus 264 nt~~~~gvVv~tG~~T---k~~~~~~~~~~k~s~le~~~~~~~~~~~~~~i~~~~i~~i~~~~~~~~~~~~~~~~~w~~~ 340 (1019)
+++.|++||.+| ++.+....++.+++++++.++++..+++++.++++++.+++|.++.... .|.
T Consensus 302 ----~~~~v~~~G~~T~l~~I~~lv~~a~~~k~~~q~~~d~~a~~~v~~vl~ia~~~~~~w~~~~~~~-------~~~-- 368 (736)
T 3rfu_A 302 ----FVMKALHVGSDTMLARIVQMVSDAQRSRAPIQRLADTVSGWFVPAVILVAVLSFIVWALLGPQP-------ALS-- 368 (736)
T ss_dssp ----CCEEECCCSTTSHHHHHHHHHHHHHSSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSS-------STT--
T ss_pred ----EEEEEEEECHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------HHH--
T ss_conf ----9999998412259999999999743268979999999999999999999999999999967873-------299--
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCC
Q ss_conf 79998766851257899999999999972023340367899999998977513411112236987432465334311370
Q 001740 341 PDDTTAYYDPKRAAVAAVLHFLTALMLYGYLIPISLYVSIEIVKILQSIFINQDLHMYYEETDKPARARTSNLNEELGQV 420 (1019)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~iP~sL~v~i~~~~~~~~~~i~~d~~m~~~~~~~~i~~~~~~~~e~Lg~v 420 (1019)
..+..++.+++.+|||+|+++++++...+..++ +++++++|+++.+|.||++
T Consensus 369 ------------------~~l~~ai~vlviacPcaL~la~p~a~~~~~~~~----------a~~gilvk~~~alE~l~~v 420 (736)
T 3rfu_A 369 ------------------YGLIAAVSVLIIACPCALGLATPMSIMVGVGKG----------AQSGVLIKNAEALERMEKV 420 (736)
T ss_dssp ------------------HHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHHH----------HHTTEEESCHHHHHHHTSC
T ss_pred ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHCCEEECHHHHHHHHCCC
T ss_conf ------------------999998774877324278888999999999997----------5151332337899986279
Q ss_pred EEEEECCCCCCCCCEEEEEEEEECCEEECCCCHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHCCCCCCCC
Q ss_conf 39997587620013039999999376514882178999876239999622001001334468866673333136688998
Q 001740 421 DTILSDKTGTLTCNSMEFIKCSIAGTSYGRGVTEVERAMARRKGSPLEEEVTEEQEDKASIKGFNFEDERIMNGSWVNEP 500 (1019)
Q Consensus 421 ~~i~~DKTGTLT~n~m~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~d~~~~~~~~~~~~ 500 (1019)
++||||||||||+|+|++.++...+.. +
T Consensus 421 ~~i~fDKTGTLT~g~~~v~~i~~~~~~------~---------------------------------------------- 448 (736)
T 3rfu_A 421 NTLVVDKTGTLTEGHPKLTRIVTDDFV------E---------------------------------------------- 448 (736)
T ss_dssp CEEEECCBTTTBCSSCEEEEEEESSSC------H----------------------------------------------
T ss_pred CEEEEECCCCCCCCCEEEEEEEECCCC------H----------------------------------------------
T ss_conf 999981898875895279999834887------7----------------------------------------------
Q ss_pred CHHHHHHHHHHHHHCCEEECCCCCCCCCEEEEECCCCHHHHHHHHHHCCCEEEEECCCEEEEEECCCCCCCCEEEEEEEE
Q ss_conf 64899999999700121553324899817998079408999999998895999752863699943787785201788896
Q 001740 501 HADVIQKFLRLLAICHTALPEVDEENGKISYEAESPDEAAFVIAARELGFEFYERTQTSISVHELDPVTGTKVERSYSLL 580 (1019)
Q Consensus 501 ~~~~~~~~~~~lalC~~~~~~~~~~~~~~~y~~~sp~e~Alv~~a~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~il 580 (1019)
.+++...+.+ ++.++||.+.|+++++++.|+.+.
T Consensus 449 -----~~~l~~aa~l--------------e~~s~hPla~Aiv~~a~~~~~~~~--------------------------- 482 (736)
T 3rfu_A 449 -----DNALALAAAL--------------EHQSEHPLANAIVHAAKEKGLSLG--------------------------- 482 (736)
T ss_dssp -----HHHHHHHHHH--------------HHSSCCHHHHHHHHHHHTTCCCCC---------------------------
T ss_pred -----HHHHHHHHHH--------------HHCCCCHHHHHHHHHHHHCCCCCC---------------------------
T ss_conf -----8999999998--------------622899289999999996599866---------------------------
Q ss_pred EEECCCCCCCEEEEEEEECCCEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEEEEEECCHHHHHHHH
Q ss_conf 75337889812899998079909999816646888987201222399999999999862574889999975998999999
Q 001740 581 NVLEFSSSRKRMSVIVRSEEGTLLLLSKGADSVMFERLAENGREFEEQTKEHINEYADAGLRTLILAYRELDEKEYKQFN 660 (1019)
Q Consensus 581 ~~~~F~s~rkrmsviv~~~~g~~~l~~KGa~~~i~~~~~~~~~~~~~~~~~~l~~~~~~Glr~l~~A~k~l~~~e~~~~~ 660 (1019)
...+|++.+++.. ... .+|+ .+.+|+++.+.+.... .....+..++++.+|+|++++|
T Consensus 483 ~~~~f~~~~g~gv-~~~-~~g~--~~~~G~~~~~~~~~~~-----~~~~~~~~~~~~~~G~~vl~va------------- 540 (736)
T 3rfu_A 483 SVEAFEAPTGKGV-VGQ-VDGH--HVAIGNARLMQEHGGD-----NAPLFEKADELRGKGASVMFMA------------- 540 (736)
T ss_dssp CCSCCCCCTTTEE-EEC-SSSS--CEEEESHHHHHHHCCC-----CHHHHHHHHHHHHTTCEEEEEE-------------
T ss_pred CCCCCCCCCCCEE-EEE-ECCE--EEEECCHHHHHHCCCC-----HHHHHHHHHHHHHCCCEEEEEE-------------
T ss_conf 7543202488658-999-9998--9997389999873997-----1678999999985698699998-------------
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCC
Q ss_conf 99999862020139999999999740290899731024435889199999998659929999389866699999875644
Q 001740 661 EEFTEAKNSVSADREELAEEIAEKIEKNLILLGATAVEDKLQNGVPECIDKLAQAGIKLWVLTGDKMETAINIGFACSLL 740 (1019)
Q Consensus 661 ~~~~~a~~~~~~~r~~~~~~~~~~iE~dl~llG~~~ieD~lr~~v~~~I~~L~~aGIkv~ilTGD~~~ta~~ia~~~gi~ 740 (1019)
.|.+++|+++++|++|++++++|+.|+++||+++|+|||+..+|..+++++|+.
T Consensus 541 --------------------------~d~~~~G~i~i~D~i~~~~~~aI~~L~~~Gi~v~mlTGd~~~~a~~ia~~lgi~ 594 (736)
T 3rfu_A 541 --------------------------VDGKTVALLVVEDPIKSSTPETILELQQSGIEIVMLTGDSKRTAEAVAGTLGIK 594 (736)
T ss_dssp --------------------------ETTEEEEEEEEECCBCSSHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHTCC
T ss_pred --------------------------ECCEEEEEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCC
T ss_conf --------------------------799899999850322030999999999879949998798989999999985998
Q ss_pred CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHCHHHHHHHHHH
Q ss_conf 37934999917887543343045799999999863568764021111357689899699993501346303889999999
Q 001740 741 RQGMRQVIISSETPESKTLEKSEDKSAAAAALKASVLHQLIRGKELLDSSNESLGPLALIIDGKSLTYALEDDVKDLFLE 820 (1019)
Q Consensus 741 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvi~G~~l~~~l~~~~~~~~~~ 820 (1019)
.
T Consensus 595 ~------------------------------------------------------------------------------- 595 (736)
T 3rfu_A 595 K------------------------------------------------------------------------------- 595 (736)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred E-------------------------------------------------------------------------------
T ss_conf 7-------------------------------------------------------------------------------
Q ss_pred HHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHCCCCCEEECCCCCHHHHHCCCEECCC--CHHHH
Q ss_conf 9720572089825920199999999720898399983997792333104844023287401342216541013--01168
Q 001740 821 LAIGCASVICCRSSPKQKALVTRLVKTKTSSTTLAIGDGANDVGMLQEADIGVGISGVEGMQAVMSSDIAIAQ--FRFLE 898 (1019)
Q Consensus 821 ~~~~~~~vv~~r~sp~qK~~iV~~lk~~~g~~vlaiGDG~ND~~ml~~AdvGIai~g~~~~~a~~~aD~vi~~--f~~l~ 898 (1019)
++++++|++|..+|+.+++ .+..|+|+|||.||++||++||+||+| |+....++++||+++.+ ++.+.
T Consensus 596 --------v~a~~~P~~K~~~v~~l~~-~g~~V~~vGDG~ND~paL~~AdvGIAm-g~g~d~a~~~AD~vl~~~~~~~i~ 665 (736)
T 3rfu_A 596 --------VVAEIMPEDKSRIVSELKD-KGLIVAMAGDGVNDAPALAKADIGIAM-GTGTDVAIESAGVTLLHGDLRGIA 665 (736)
T ss_dssp --------EECSCCHHHHHHHHHHHHH-HSCCEEEEECSSTTHHHHHHSSEEEEE-SSSCSHHHHHCSEEECSCCSTTHH
T ss_pred --------EEEECCHHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHCCEEEEE-CCCCHHHHHHCCEEECCCCHHHHH
T ss_conf --------9970699999999999996-699899998985769999869977994-786599997699999269878999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99988635577687877999878689999999
Q 001740 899 RLLLVHGHWCYRRISSMICYFFYKNIAFGFTL 930 (1019)
Q Consensus 899 ~lll~~Gr~~~~~~~~~i~~~~~~ni~~~~~~ 930 (1019)
.+ +.+||..++++++++.|.|.+|++.+.+.
T Consensus 666 ~a-i~~sr~t~~~i~qnl~~a~~yN~~~iplA 696 (736)
T 3rfu_A 666 KA-RRLSESTMSNIRQNLFFAFIYNVLGVPLA 696 (736)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99-99999999999999999999999999999
No 7
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=1.00 E-value=1 Score=603.18 Aligned_cols=489 Identities=20% Similarity=0.250 Sum_probs=396.2
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHH------HHHCCEEEEEECCCEEEEEECCCCCCCCEEEECCCCCCCCCEEEEEECCC
Q ss_conf 434766551188999999974359------87422278991598199973157853609983179856751899720589
Q 001740 110 LVVVIGATMGKEVLEDWRRKKQDI------EVNNRKVKVHCGEGAFDYTKWRDLKVGDVVKVEKDEFFPADLILLSSSYE 183 (1019)
Q Consensus 110 l~~vi~~s~i~~~~~d~~r~k~~~------~~n~~~~~V~~r~g~~~~i~~~~L~vGDII~i~~ge~iPaD~ilL~~s~~ 183 (1019)
..+++++..+.+++|++.++|+.+ .+.+.+++|+ |+|++++|++++|+|||+|.|++||.||||+++++|+
T Consensus 177 ~~~i~~~~~ig~~le~~~~~~~~~~i~~l~~l~~~~a~v~-r~g~~~~i~~~~l~~GDiv~v~~Ge~IPaDg~vl~G~-- 253 (723)
T 3j09_A 177 SVLLLAFLLLGRTLEARAKSRTGEAIKKLVGLQAKTAVVI-RDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGE-- 253 (723)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHTSCSEEEEE-ETTEEEEEEGGGCCTTCEEEECTTCBCCSEEEEEECC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE-ECCEEEEEEHHHCCCCCEEEECCCCEEEEEEEEEECC--
T ss_conf 9999999999999999999999999988872699756999-8998999898997999899988999885679999777--
Q ss_pred CCEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCEECCCCEEE
Q ss_conf 96299991377887752221001112467782122346079995159999620389999538534689888001573552
Q 001740 184 EAICYVETTNLDGETNLKLKQALDATSNMHEDSNFQNFKAIIRCEDPNANLYTFVGSLELEEQQYPLTPQQLLLRDSKLR 263 (1019)
Q Consensus 184 ~~~~~Vdts~LtGEs~~~~K~~~~~~~~~~~~~~~~~~~~~i~~e~pn~~~~~f~Gt~~~~g~~~~l~~~n~l~rgs~l~ 263 (1019)
|+||||+|||||.|+.|.+++.. |+|+++.+|
T Consensus 254 ---~~VdeS~LTGES~pv~K~~g~~v---------------------------~~Gt~~~~g------------------ 285 (723)
T 3j09_A 254 ---SYVDESMISGEPVPVLKSKGDEV---------------------------FGATINNTG------------------ 285 (723)
T ss_dssp ---EEEECHHHHCCSSCEEECTTCEE---------------------------CTTCEECSS------------------
T ss_pred ---EEEECCCCCCCCCCEEECCCCEE---------------------------CCCEEEECC------------------
T ss_conf ---68860001388764663689823---------------------------041697067------------------
Q ss_pred CCCCEEEEEEEECCCC---CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCC
Q ss_conf 2881899999845542---2113458999855289998769999999999999999998641253112567533322336
Q 001740 264 NTDCIYGAVIFTGRDT---KVFQNSTGPPSKRSKVERRMDKIIYFLFGILVLMSFIGSIFFGIATREDLQDGKMKRWYLR 340 (1019)
Q Consensus 264 nt~~~~gvVv~tG~~T---k~~~~~~~~~~k~s~le~~~~~~~~~~~~~~i~~~~i~~i~~~~~~~~~~~~~~~~~w~~~ 340 (1019)
++.++|++||.+| ++++....++.+++++++.++++..+++++.++++++.+++|.++... +|.
T Consensus 286 ---~~~~~v~~~g~~T~l~~i~~lv~~a~~~k~~~~~~~d~~~~~~~~~vl~~a~~~~~~~~~~~~~--------~~~-- 352 (723)
T 3j09_A 286 ---VLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFIPTVLLVAISAFIYWYFIAHA--------PLL-- 352 (723)
T ss_dssp ---CEEEEEEECGGGSHHHHHHHHHSSSCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSTTC--------TTC--
T ss_pred ---CEEEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------CHH--
T ss_conf ---2999999846743999999999975346983899999999999999999999999999985688--------699--
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCC
Q ss_conf 79998766851257899999999999972023340367899999998977513411112236987432465334311370
Q 001740 341 PDDTTAYYDPKRAAVAAVLHFLTALMLYGYLIPISLYVSIEIVKILQSIFINQDLHMYYEETDKPARARTSNLNEELGQV 420 (1019)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~iP~sL~v~i~~~~~~~~~~i~~d~~m~~~~~~~~i~~~~~~~~e~Lg~v 420 (1019)
..+..++.+++..|||+|+++++++...+..++ +++++++|+++.+|.||++
T Consensus 353 ------------------~~~~~~i~vlvia~P~aL~la~p~a~~~~~~~~----------a~~gilvk~~~~lE~lg~v 404 (723)
T 3j09_A 353 ------------------FAFTTLIAVLVVACPCAFGLATPTALTVGMGKG----------AELGILIKNADALEVAEKV 404 (723)
T ss_dssp ------------------CSHHHHHHHHHHHSCTTHHHHHHHHHHHHHHHH----------HTTTCEESSTTHHHHGGGC
T ss_pred ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHCCEEEECHHHHHHHHCC
T ss_conf ------------------999999999975026789999999999999999----------9889389482899876249
Q ss_pred EEEEECCCCCCCCCEEEEEEEEECCEEECCCCHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHCCCCCCCC
Q ss_conf 39997587620013039999999376514882178999876239999622001001334468866673333136688998
Q 001740 421 DTILSDKTGTLTCNSMEFIKCSIAGTSYGRGVTEVERAMARRKGSPLEEEVTEEQEDKASIKGFNFEDERIMNGSWVNEP 500 (1019)
Q Consensus 421 ~~i~~DKTGTLT~n~m~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~d~~~~~~~~~~~~ 500 (1019)
++||||||||||+|+|++.++...+..
T Consensus 405 ~~i~fDKTGTLT~g~~~v~~~~~~~~~----------------------------------------------------- 431 (723)
T 3j09_A 405 TAVIFDKTGTLTKGKPEVTDLVPLNGD----------------------------------------------------- 431 (723)
T ss_dssp CEEEEEHHHHTSCSCCEEEEEEESSSC-----------------------------------------------------
T ss_pred CEEEECCCCCCCCCCEEEEEEEECCCC-----------------------------------------------------
T ss_conf 899984777552696279999807999-----------------------------------------------------
Q ss_pred CHHHHHHHHHHHHHCCEEECCCCCCCCCEEEEECCCCHHHHHHHHHHCCCEEEEECCCEEEEEECCCCCCCCEEEEEEEE
Q ss_conf 64899999999700121553324899817998079408999999998895999752863699943787785201788896
Q 001740 501 HADVIQKFLRLLAICHTALPEVDEENGKISYEAESPDEAAFVIAARELGFEFYERTQTSISVHELDPVTGTKVERSYSLL 580 (1019)
Q Consensus 501 ~~~~~~~~~~~lalC~~~~~~~~~~~~~~~y~~~sp~e~Alv~~a~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~il 580 (1019)
..+++...+.+.. .++||++.|+++++.+.|+.+..... .. ..+|+|...
T Consensus 432 ----~~~~l~~aa~~e~--------------~s~hP~~~Ai~~~a~~~~~~~~~~~~--~~-----~~~g~g~~~----- 481 (723)
T 3j09_A 432 ----ERELLRLAAIAER--------------RSEHPIAEAIVKKALEHGIELGEPEK--VE-----VIAGEGVVA----- 481 (723)
T ss_dssp ----HHHHHHHHHHHHT--------------TCCSHHHHHHHHHHHHTTCCCCSCCC--CE-----EETTTEEEE-----
T ss_pred ----HHHHHHHHHHHHC--------------CCCCCHHHHHHHHHHHCCCCCCCCCC--EE-----EECCCCEEE-----
T ss_conf ----8999999999850--------------49995428999999854998578644--59-----966981699-----
Q ss_pred EEECCCCCCCEEEEEEEECCCEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEEEEEECCHHHHHHHH
Q ss_conf 75337889812899998079909999816646888987201222399999999999862574889999975998999999
Q 001740 581 NVLEFSSSRKRMSVIVRSEEGTLLLLSKGADSVMFERLAENGREFEEQTKEHINEYADAGLRTLILAYRELDEKEYKQFN 660 (1019)
Q Consensus 581 ~~~~F~s~rkrmsviv~~~~g~~~l~~KGa~~~i~~~~~~~~~~~~~~~~~~l~~~~~~Glr~l~~A~k~l~~~e~~~~~ 660 (1019)
..+.+|+++.+.+.. ....+.....+++++.+|+|++++|
T Consensus 482 -----------------------~~~~~g~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~va------------- 521 (723)
T 3j09_A 482 -----------------------DGILVGNKRLMEDFG----VAVSNEVELALEKLEREAKTAVIVA------------- 521 (723)
T ss_dssp -----------------------TTEEEECHHHHHHTT----CCCCHHHHHHHHHHHTTTCEEEEEE-------------
T ss_pred -----------------------EEEEECCHHHHHHCC----CCCCHHHHHHHHHHHHCCCEEEEEE-------------
T ss_conf -----------------------999977899997549----9860899999999985598289997-------------
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCC
Q ss_conf 99999862020139999999999740290899731024435889199999998659929999389866699999875644
Q 001740 661 EEFTEAKNSVSADREELAEEIAEKIEKNLILLGATAVEDKLQNGVPECIDKLAQAGIKLWVLTGDKMETAINIGFACSLL 740 (1019)
Q Consensus 661 ~~~~~a~~~~~~~r~~~~~~~~~~iE~dl~llG~~~ieD~lr~~v~~~I~~L~~aGIkv~ilTGD~~~ta~~ia~~~gi~ 740 (1019)
.|++++|+++++|++|++++++|+.|+++||++||+|||+..+|..+++++|+.
T Consensus 522 --------------------------~~~~~~G~i~i~D~~~~~~~~~i~~l~~~Gi~v~~~TGd~~~~a~~ia~~lgi~ 575 (723)
T 3j09_A 522 --------------------------RNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNLD 575 (723)
T ss_dssp --------------------------ETTEEEEEEEEECCSCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCS
T ss_pred --------------------------ECCEEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCC
T ss_conf --------------------------899999999606875256999999999779979999998989999999985993
Q ss_pred CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHCHHHHHHHHHH
Q ss_conf 37934999917887543343045799999999863568764021111357689899699993501346303889999999
Q 001740 741 RQGMRQVIISSETPESKTLEKSEDKSAAAAALKASVLHQLIRGKELLDSSNESLGPLALIIDGKSLTYALEDDVKDLFLE 820 (1019)
Q Consensus 741 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvi~G~~l~~~l~~~~~~~~~~ 820 (1019)
.
T Consensus 576 ~------------------------------------------------------------------------------- 576 (723)
T 3j09_A 576 L------------------------------------------------------------------------------- 576 (723)
T ss_dssp E-------------------------------------------------------------------------------
T ss_pred E-------------------------------------------------------------------------------
T ss_conf 8-------------------------------------------------------------------------------
Q ss_pred HHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHCCCCCEEECCCCCHHHHHCCCEECCC--CHHHH
Q ss_conf 9720572089825920199999999720898399983997792333104844023287401342216541013--01168
Q 001740 821 LAIGCASVICCRSSPKQKALVTRLVKTKTSSTTLAIGDGANDVGMLQEADIGVGISGVEGMQAVMSSDIAIAQ--FRFLE 898 (1019)
Q Consensus 821 ~~~~~~~vv~~r~sp~qK~~iV~~lk~~~g~~vlaiGDG~ND~~ml~~AdvGIai~g~~~~~a~~~aD~vi~~--f~~l~ 898 (1019)
++++++|+||..+++.+++ . +.|+|+|||.||++||++||+||+|+ +....++++||+++.+ ++.+.
T Consensus 577 --------~~~~~~P~~K~~~v~~l~~-~-~~v~~vGDg~ND~~al~~A~vgiamg-~g~~~a~~~AD~vl~~~~~~~i~ 645 (723)
T 3j09_A 577 --------VIAEVLPHQKSEEVKKLQA-K-EVVAFVGDGINDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVV 645 (723)
T ss_dssp --------EECSCCTTCHHHHHHHHTT-T-CCEEEEECSSTTHHHHHHSSEEEECC-CCSCCSSCCSSEECSSCCTTHHH
T ss_pred --------EECCCCHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHCCEEEEEC-CCCHHHHHHCCEEEECCCHHHHH
T ss_conf --------9926899999999999834-9-93999989823099995499879967-87599998699999679988999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99988635577687877999878689999999
Q 001740 899 RLLLVHGHWCYRRISSMICYFFYKNIAFGFTL 930 (1019)
Q Consensus 899 ~lll~~Gr~~~~~~~~~i~~~~~~ni~~~~~~ 930 (1019)
.+ +.+||+.++++++++.|.|++|+..+...
T Consensus 646 ~~-i~~~r~~~~~i~~nl~~a~~~n~~~i~~a 676 (723)
T 3j09_A 646 AA-IQLSRKTMSKIKQNIFWALIYNVILIPAA 676 (723)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99-99999999999999999999999999999
No 8
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=1.00 E-value=1 Score=596.02 Aligned_cols=487 Identities=20% Similarity=0.260 Sum_probs=394.7
Q ss_pred HHHHHHHHCHHHHHHHHHHHHHH------HHHCCEEEEEECCCEEEEEECCCCCCCCEEEECCCCCCCCCEEEEEECCCC
Q ss_conf 34766551188999999974359------874222789915981999731578536099831798567518997205899
Q 001740 111 VVVIGATMGKEVLEDWRRKKQDI------EVNNRKVKVHCGEGAFDYTKWRDLKVGDVVKVEKDEFFPADLILLSSSYEE 184 (1019)
Q Consensus 111 ~~vi~~s~i~~~~~d~~r~k~~~------~~n~~~~~V~~r~g~~~~i~~~~L~vGDII~i~~ge~iPaD~ilL~~s~~~ 184 (1019)
.+++++..+.+++|++.++|+.+ ++.+.+++|+ |||++++|++++|+|||+|.|++||.||||+++++|+
T Consensus 100 ~~i~~~~~ig~~le~~~~~~~~~~l~~l~~l~~~~a~v~-r~g~~~~i~~~~l~~GDiv~v~~Ge~IPaDg~vl~G~--- 175 (645)
T 3j08_A 100 VLLLAFLLLGRTLEARAKSRTGEAIKKLVGLQAKTAVVI-RDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGE--- 175 (645)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHTSCSEEEEE-ETTEEEEEEGGGCCTTCEEEECTTCBCCSEEEEEECC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE-ECCEEEEEEHHHCCCCCEEEECCCCEEEEEEEEEECC---
T ss_conf 999999999999999999999999999861799979999-9997999889997989999988999886689999886---
Q ss_pred CEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCEECCCCEEEC
Q ss_conf 62999913778877522210011124677821223460799951599996203899995385346898880015735522
Q 001740 185 AICYVETTNLDGETNLKLKQALDATSNMHEDSNFQNFKAIIRCEDPNANLYTFVGSLELEEQQYPLTPQQLLLRDSKLRN 264 (1019)
Q Consensus 185 ~~~~Vdts~LtGEs~~~~K~~~~~~~~~~~~~~~~~~~~~i~~e~pn~~~~~f~Gt~~~~g~~~~l~~~n~l~rgs~l~n 264 (1019)
|+||||+|||||.|+.|.+++.. |+|+++.+|.
T Consensus 176 --~~VdeS~LTGES~Pv~K~~g~~v---------------------------~~Gt~~~~g~------------------ 208 (645)
T 3j08_A 176 --SYVDESMISGEPVPVLKSKGDEV---------------------------FGATINNTGV------------------ 208 (645)
T ss_dssp --EEEECHHHHCCSSCEEECTTCEE---------------------------CTTCEECSSC------------------
T ss_pred --EEEECCCCCCCCCCEECCCCCEE---------------------------ECCEEEECCC------------------
T ss_conf --89980224699876560899974---------------------------1667982572------------------
Q ss_pred CCCEEEEEEEECCCC---CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCC
Q ss_conf 881899999845542---21134589998552899987699999999999999999986412531125675333223367
Q 001740 265 TDCIYGAVIFTGRDT---KVFQNSTGPPSKRSKVERRMDKIIYFLFGILVLMSFIGSIFFGIATREDLQDGKMKRWYLRP 341 (1019)
Q Consensus 265 t~~~~gvVv~tG~~T---k~~~~~~~~~~k~s~le~~~~~~~~~~~~~~i~~~~i~~i~~~~~~~~~~~~~~~~~w~~~~ 341 (1019)
++++|++||.+| ++.+....++.+++++++.++++..+++++.++++++.+++|.++... +|..
T Consensus 209 ---~~~~v~~~G~~T~l~~i~~lv~~a~~~k~~~~~~~d~~~~~~~~~vl~~a~~~~~~~~~~~~~--------~~~~-- 275 (645)
T 3j08_A 209 ---LKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFIPTVLLVAISAFIYWYFIAHA--------PLLF-- 275 (645)
T ss_dssp ---EEEEEEECGGGSHHHHHHHHHSCCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCSC--------SCCC--
T ss_pred ---EEEEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------CHHH--
T ss_conf ---999999727745999999999973146985899999999999999999999999999995698--------6999--
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCE
Q ss_conf 99987668512578999999999999720233403678999999989775134111122369874324653343113703
Q 001740 342 DDTTAYYDPKRAAVAAVLHFLTALMLYGYLIPISLYVSIEIVKILQSIFINQDLHMYYEETDKPARARTSNLNEELGQVD 421 (1019)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~iP~sL~v~i~~~~~~~~~~i~~d~~m~~~~~~~~i~~~~~~~~e~Lg~v~ 421 (1019)
.+..++.+++..|||+|+++++++...+..++ +++++++|+++.+|.||+++
T Consensus 276 ------------------~~~~~i~vlvia~P~aL~la~p~a~~~~~~~~----------a~~gilvk~~~~lE~lg~v~ 327 (645)
T 3j08_A 276 ------------------AFTTLIAVLVVACPCAFGLATPTALTVGMGKG----------AELGILIKNADALEVAEKVT 327 (645)
T ss_dssp ------------------TTTTTHHHHHHHSCTTHHHHHHHHHHHHHHHH----------HTTCCCCSSTTHHHHGGGCC
T ss_pred ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHCCEEECCCHHHHHHHCCC
T ss_conf ------------------99999999998736689999999999999999----------97793766816999862799
Q ss_pred EEEECCCCCCCCCEEEEEEEEECCEEECCCCHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHCCCCCCCCC
Q ss_conf 99975876200130399999993765148821789998762399996220010013344688666733331366889986
Q 001740 422 TILSDKTGTLTCNSMEFIKCSIAGTSYGRGVTEVERAMARRKGSPLEEEVTEEQEDKASIKGFNFEDERIMNGSWVNEPH 501 (1019)
Q Consensus 422 ~i~~DKTGTLT~n~m~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~d~~~~~~~~~~~~~ 501 (1019)
++|||||||||+|+|++.++...+..
T Consensus 328 ~i~fDKTGTLT~~~~~v~~~~~~~~~------------------------------------------------------ 353 (645)
T 3j08_A 328 AVIFDKTGTLTKGKPEVTDLVPLNGD------------------------------------------------------ 353 (645)
T ss_dssp EEEEEGGGTSSSSCCEEEEEEESSSC------------------------------------------------------
T ss_pred EEEECCCCCCCCCCEEEEEEEECCCC------------------------------------------------------
T ss_conf 99986866655897079999817999------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHCCEEECCCCCCCCCEEEEECCCCHHHHHHHHHHCCCEEEEECCCEEEEEECCCCCCCCEEEEEEEEE
Q ss_conf 48999999997001215533248998179980794089999999988959997528636999437877852017888967
Q 001740 502 ADVIQKFLRLLAICHTALPEVDEENGKISYEAESPDEAAFVIAARELGFEFYERTQTSISVHELDPVTGTKVERSYSLLN 581 (1019)
Q Consensus 502 ~~~~~~~~~~lalC~~~~~~~~~~~~~~~y~~~sp~e~Alv~~a~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~il~ 581 (1019)
.++++...+.|+. .++||++.|+++++++.|+.+....+ .. ..+|+|...
T Consensus 354 ---~~~~l~~aa~~e~--------------~s~hPla~Aiv~~a~~~g~~~~~~~~--~~-----~~~g~g~~~------ 403 (645)
T 3j08_A 354 ---ERELLRLAAIAER--------------RSEHPIAEAIVKKALEHGIELGEPEK--VE-----VIAGEGVVA------ 403 (645)
T ss_dssp ---HHHHHHHHHHHHT--------------TCCSHHHHHHHHHHHHTTCCCCSCCC--CE-----EETTTEEEE------
T ss_pred ---HHHHHHHHHHHHH--------------CCCCHHHHHHHHHHHHCCCCCCCCCC--EE-----EECCCCEEE------
T ss_conf ---7999999999751--------------58874679999999965998678653--59-----965884699------
Q ss_pred EECCCCCCCEEEEEEEECCCEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEEEEEECCHHHHHHHHH
Q ss_conf 53378898128999980799099998166468889872012223999999999998625748899999759989999999
Q 001740 582 VLEFSSSRKRMSVIVRSEEGTLLLLSKGADSVMFERLAENGREFEEQTKEHINEYADAGLRTLILAYRELDEKEYKQFNE 661 (1019)
Q Consensus 582 ~~~F~s~rkrmsviv~~~~g~~~l~~KGa~~~i~~~~~~~~~~~~~~~~~~l~~~~~~Glr~l~~A~k~l~~~e~~~~~~ 661 (1019)
..+.+|+++.+.+. +....+.....+++++.+|+|++++|
T Consensus 404 ----------------------~~v~~g~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~l~va-------------- 443 (645)
T 3j08_A 404 ----------------------DGILVGNKRLMEDF----GVAVSNEVELALEKLEREAKTAVIVA-------------- 443 (645)
T ss_dssp ----------------------TTEEEECHHHHHHT----TCCCCHHHHHHHHHHHTTTCCCEEEE--------------
T ss_pred ----------------------EEEEECCHHHHHHC----CCCCCHHHHHHHHHHHHCCCEEEEEE--------------
T ss_conf ----------------------99998879999754----98751889999999985598389998--------------
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCC
Q ss_conf 99998620201399999999997402908997310244358891999999986599299993898666999998756443
Q 001740 662 EFTEAKNSVSADREELAEEIAEKIEKNLILLGATAVEDKLQNGVPECIDKLAQAGIKLWVLTGDKMETAINIGFACSLLR 741 (1019)
Q Consensus 662 ~~~~a~~~~~~~r~~~~~~~~~~iE~dl~llG~~~ieD~lr~~v~~~I~~L~~aGIkv~ilTGD~~~ta~~ia~~~gi~~ 741 (1019)
.|++++|+++++|++|++++++|+.|+++|+++||+|||+..+|..+++++|+..
T Consensus 444 -------------------------~~~~~~G~i~~~D~l~~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia~~lgi~~ 498 (645)
T 3j08_A 444 -------------------------RNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNLDL 498 (645)
T ss_dssp -------------------------ETTEEEEEEEEECCCTTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCSE
T ss_pred -------------------------ECCEEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCCCE
T ss_conf -------------------------8999999999348765679999999997799799990888799999999839978
Q ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHCHHHHHHHHHHH
Q ss_conf 79349999178875433430457999999998635687640211113576898996999935013463038899999999
Q 001740 742 QGMRQVIISSETPESKTLEKSEDKSAAAAALKASVLHQLIRGKELLDSSNESLGPLALIIDGKSLTYALEDDVKDLFLEL 821 (1019)
Q Consensus 742 ~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvi~G~~l~~~l~~~~~~~~~~~ 821 (1019)
T Consensus 499 -------------------------------------------------------------------------------- 498 (645)
T 3j08_A 499 -------------------------------------------------------------------------------- 498 (645)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHCCCCCEEECCCCCHHHHHCCCEECCC--CHHHHH
Q ss_conf 720572089825920199999999720898399983997792333104844023287401342216541013--011689
Q 001740 822 AIGCASVICCRSSPKQKALVTRLVKTKTSSTTLAIGDGANDVGMLQEADIGVGISGVEGMQAVMSSDIAIAQ--FRFLER 899 (1019)
Q Consensus 822 ~~~~~~vv~~r~sp~qK~~iV~~lk~~~g~~vlaiGDG~ND~~ml~~AdvGIai~g~~~~~a~~~aD~vi~~--f~~l~~ 899 (1019)
++++++|++|..+++.+++ . +.|+|+|||.||++|+++||+||+|+ +....++++||+++.+ ++.+..
T Consensus 499 -------~~~~~~P~~K~~~v~~l~~-~-~~v~~vGDg~ND~~al~~A~vgiamg-~g~~~a~~~AD~vl~~~~~~~i~~ 568 (645)
T 3j08_A 499 -------VIAEVLPHQKSEEVKKLQA-K-EVVAFVGDGINDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVA 568 (645)
T ss_dssp -------EECSCCTTCHHHHHHHHTT-T-CCEEEEECSSSCHHHHHHSSEEEEEC-CCSCCSSCCSSSEESSCCTTHHHH
T ss_pred -------EEEECCHHHHHHHHHHHHH-C-CEEEEEECCHHHHHHHHHCCEEEEEC-CCCHHHHHHCCEEEECCCHHHHHH
T ss_conf -------9983787768999999860-9-95999969776899997599889948-875999986999993699889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 998863557768787799987868999999
Q 001740 900 LLLVHGHWCYRRISSMICYFFYKNIAFGFT 929 (1019)
Q Consensus 900 lll~~Gr~~~~~~~~~i~~~~~~ni~~~~~ 929 (1019)
+ +.+||+.++++++++.|.+++|+..+..
T Consensus 569 ~-i~~~r~~~~~i~~nl~~a~~~N~~~i~l 597 (645)
T 3j08_A 569 A-IQLSRKTMSKIKQNIFWALIYNVILIPA 597 (645)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9-9999999999999999999999999999
No 9
>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy metal translocation; 2.20A {Sulfolobus solfataricus} PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A*
Probab=1.00 E-value=1 Score=211.06 Aligned_cols=251 Identities=22% Similarity=0.291 Sum_probs=176.9
Q ss_pred CCCCCCCCCCCHHHHCCCCEEEEECCCCCCCCCEEEEEEEEECCEEECCCCHHHHHHHHHHCCCCCCCCCHHHCCCCCCC
Q ss_conf 69874324653343113703999758762001303999999937651488217899987623999962200100133446
Q 001740 402 TDKPARARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSIAGTSYGRGVTEVERAMARRKGSPLEEEVTEEQEDKASI 481 (1019)
Q Consensus 402 ~~~~i~~~~~~~~e~Lg~v~~i~~DKTGTLT~n~m~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (1019)
+++++++|+++.+|.|++|++||||||||||+++|.+..+. . ..
T Consensus 10 ~~~gil~k~~~~le~l~~i~~v~fDktGTLT~g~~~v~~~~------~--~~---------------------------- 53 (263)
T 2yj3_A 10 LHKGMIIKNSNVYEKIKEIDTIIFEKTGTLTYGTPIVTQFI------G--DS---------------------------- 53 (263)
Q ss_pred CCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHCCEEECCCCCCCCCEEEEECCCCHHHHHHHHHHCCCEEEEECCCEEE
Q ss_conf 88666733331366889986489999999970012155332489981799807940899999999889599975286369
Q 001740 482 KGFNFEDERIMNGSWVNEPHADVIQKFLRLLAICHTALPEVDEENGKISYEAESPDEAAFVIAARELGFEFYERTQTSIS 561 (1019)
Q Consensus 482 ~~~~f~d~~~~~~~~~~~~~~~~~~~~~~~lalC~~~~~~~~~~~~~~~y~~~sp~e~Alv~~a~~~g~~~~~~~~~~~~ 561 (1019)
+++..++ ..+..+.||...|+..+++..|+......
T Consensus 54 -------------------------~~l~~~~--------------~~e~~s~hp~a~ai~~~~~~~g~~~~~~~----- 89 (263)
T 2yj3_A 54 -------------------------LSLAYAA--------------SVEALSSHPIAKAIVKYAKEQGVKILEVK----- 89 (263)
Q ss_pred EEECCCCCCCCEEEEEEEEEEECCCCCCCEEEEEEEECCCEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 99437877852017888967533788981289999807990999981664688898720122239999999999986257
Q 001740 562 VHELDPVTGTKVERSYSLLNVLEFSSSRKRMSVIVRSEEGTLLLLSKGADSVMFERLAENGREFEEQTKEHINEYADAGL 641 (1019)
Q Consensus 562 v~~~~~~~~~~~~~~~~il~~~~F~s~rkrmsviv~~~~g~~~l~~KGa~~~i~~~~~~~~~~~~~~~~~~l~~~~~~Gl 641 (1019)
......|.|....+ ++. .+.-|.+. +|.
T Consensus 90 --~~~~~~G~g~~~~~----------------------~~~--~~~~G~~~--------------------------~~~ 117 (263)
T 2yj3_A 90 --DFKEISGIGVRGKI----------------------SDK--IIEVKKAE--------------------------NNN 117 (263)
Q ss_pred EEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCEEEE
Q ss_conf 48899999759989999999999986202013999999999974029089973102443588919999999865992999
Q 001740 642 RTLILAYRELDEKEYKQFNEEFTEAKNSVSADREELAEEIAEKIEKNLILLGATAVEDKLQNGVPECIDKLAQAGIKLWV 721 (1019)
Q Consensus 642 r~l~~A~k~l~~~e~~~~~~~~~~a~~~~~~~r~~~~~~~~~~iE~dl~llG~~~ieD~lr~~v~~~I~~L~~aGIkv~i 721 (1019)
+ +.+ ..+..+.|.+.+.|++++++.++++.|++.|++++|
T Consensus 118 ~-~~~---------------------------------------~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i 157 (263)
T 2yj3_A 118 D-IAV---------------------------------------YINGEPIASFNISDVPRPNLKDYLEKLKNEGLKIII 157 (263)
Q ss_pred ECCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEE
Q ss_conf 93898666999998756443793499991788754334304579999999986356876402111135768989969999
Q 001740 722 LTGDKMETAINIGFACSLLRQGMRQVIISSETPESKTLEKSEDKSAAAAALKASVLHQLIRGKELLDSSNESLGPLALII 801 (1019)
Q Consensus 722 lTGD~~~ta~~ia~~~gi~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvi 801 (1019)
+|||+..++..++..+|+..
T Consensus 158 ~T~~~~~~~~~~~~~~gl~~------------------------------------------------------------ 177 (263)
T 2yj3_A 158 LSGDKEDKVKELSKELNIQE------------------------------------------------------------ 177 (263)
Q ss_pred CCCHHHHHCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHCCCCCEEECCCCCH
Q ss_conf 35013463038899999999720572089825920199999999720898399983997792333104844023287401
Q 001740 802 DGKSLTYALEDDVKDLFLELAIGCASVICCRSSPKQKALVTRLVKTKTSSTTLAIGDGANDVGMLQEADIGVGISGVEGM 881 (1019)
Q Consensus 802 ~G~~l~~~l~~~~~~~~~~~~~~~~~vv~~r~sp~qK~~iV~~lk~~~g~~vlaiGDG~ND~~ml~~AdvGIai~g~~~~ 881 (1019)
+|..+.|..|..+++.++. .+..++|||||.||++|++.|++||++. ....
T Consensus 178 ---------------------------~f~~~~p~~k~~~~~~l~~-~~~~~~~VGD~~~D~~aa~~Agv~va~g-~~~~ 228 (263)
T 2yj3_A 178 ---------------------------YYSNLSPEDKVRIIEKLKQ-NGNKVLMIGDGVNDAAALALADVSVAMG-NGVD 228 (263)
Q ss_pred HHHHCCCEEC--CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3422165410--13011689998863557768787
Q 001740 882 QAVMSSDIAI--AQFRFLERLLLVHGHWCYRRISS 914 (1019)
Q Consensus 882 ~a~~~aD~vi--~~f~~l~~lll~~Gr~~~~~~~~ 914 (1019)
.+...+|+++ .++..+..+ +..+|..+++++.
T Consensus 229 ~~~~~ad~v~~~~~l~~l~~~-l~~~r~~~~~i~~ 262 (263)
T 2yj3_A 229 ISKNVADIILVSNDIGTLLGL-IKNRKRLSNAIPS 262 (263)
No 10
>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I
Probab=1.00 E-value=1 Score=177.69 Aligned_cols=272 Identities=24% Similarity=0.282 Sum_probs=196.0
Q ss_pred CCCCCCCCCCCHHHHCCCCEEEEECCCCCCCCCEEEEEEEEECCEEECCCCHHHHHHHHHHCCCCCCCCCHHHCCCCCCC
Q ss_conf 69874324653343113703999758762001303999999937651488217899987623999962200100133446
Q 001740 402 TDKPARARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSIAGTSYGRGVTEVERAMARRKGSPLEEEVTEEQEDKASI 481 (1019)
Q Consensus 402 ~~~~i~~~~~~~~e~Lg~v~~i~~DKTGTLT~n~m~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (1019)
+++++++|+++.+|.+++++.|+||||||||.+.+.+..+...+. . +
T Consensus 14 ~~~gilik~~~~le~l~~i~~viFD~dGTL~ds~~~~~~~~~~~~----~--~--------------------------- 60 (287)
T 3a1c_A 14 AELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPLNG----D--E--------------------------- 60 (287)
T ss_dssp CCCCEEECSTTHHHHHHHCCEEEEECCCCCBCSCCEEEEEEESSS----C--H---------------------------
T ss_pred HHCCEEEECCHHHHHHHCCCEEEEECCCCCCCCCEEEEEEEECCC----C--H---------------------------
T ss_conf 879979968089988536999999689988289779999981799----9--9---------------------------
Q ss_pred CCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHCCEEECCCCCCCCCEEEEECCCCHHHHHHHHHHCCCEEEEECCCEEE
Q ss_conf 88666733331366889986489999999970012155332489981799807940899999999889599975286369
Q 001740 482 KGFNFEDERIMNGSWVNEPHADVIQKFLRLLAICHTALPEVDEENGKISYEAESPDEAAFVIAARELGFEFYERTQTSIS 561 (1019)
Q Consensus 482 ~~~~f~d~~~~~~~~~~~~~~~~~~~~~~~lalC~~~~~~~~~~~~~~~y~~~sp~e~Alv~~a~~~g~~~~~~~~~~~~ 561 (1019)
.+++... ..+ + ..+.||.+.|+..+++..|+..... ..+.
T Consensus 61 ------------------------~~~l~~~---~~~--e---------~~s~hp~~~a~~~~~~~~g~~~~~~--~~~~ 100 (287)
T 3a1c_A 61 ------------------------RELLRLA---AIA--E---------RRSEHPIAEAIVKKALEHGIELGEP--EKVE 100 (287)
T ss_dssp ------------------------HHHHHHH---HHH--T---------TTCCSHHHHHHHHHHHHTTCCCCCC--SCEE
T ss_pred ------------------------HHHHHHH---HHH--H---------HCCCCHHHHHHHHHHHHCCCCCCCC--CCCE
T ss_conf ------------------------9999999---997--5---------2179979999999998659985555--4414
Q ss_pred EEECCCCCCCCEEEEEEEEEEECCCCCCCEEEEEEEECCCEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 99437877852017888967533788981289999807990999981664688898720122239999999999986257
Q 001740 562 VHELDPVTGTKVERSYSLLNVLEFSSSRKRMSVIVRSEEGTLLLLSKGADSVMFERLAENGREFEEQTKEHINEYADAGL 641 (1019)
Q Consensus 562 v~~~~~~~~~~~~~~~~il~~~~F~s~rkrmsviv~~~~g~~~l~~KGa~~~i~~~~~~~~~~~~~~~~~~l~~~~~~Gl 641 (1019)
...| .+ +. . ..+.+|.++.+.+... ..++......+.+..+|.
T Consensus 101 -~~~G----~~---------------------~~--~-----~~~~~g~~~~~~~~~~----~~~~~~~~~~~~~~~~g~ 143 (287)
T 3a1c_A 101 -VIAG----EG---------------------VV--A-----DGILVGNKRLMEDFGV----AVSNEVELALEKLEREAK 143 (287)
T ss_dssp -EETT----TE---------------------EE--E-----TTEEEECHHHHHHTTC----CCCHHHHHHHHHHHHTTC
T ss_pred -EECC----CC---------------------EE--E-----EEEEECCHHHHHHCCC----CCCHHHHHHHHHHHHCCC
T ss_conf -6248----87---------------------28--8-----9999889999986599----750778999999874797
Q ss_pred EEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCHHHHHHHHHCCCEEEE
Q ss_conf 48899999759989999999999986202013999999999974029089973102443588919999999865992999
Q 001740 642 RTLILAYRELDEKEYKQFNEEFTEAKNSVSADREELAEEIAEKIEKNLILLGATAVEDKLQNGVPECIDKLAQAGIKLWV 721 (1019)
Q Consensus 642 r~l~~A~k~l~~~e~~~~~~~~~~a~~~~~~~r~~~~~~~~~~iE~dl~llG~~~ieD~lr~~v~~~I~~L~~aGIkv~i 721 (1019)
++++++ .+..+++.+..++++++++.++++.|++.|+++.+
T Consensus 144 ~~i~~~---------------------------------------~d~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i 184 (287)
T 3a1c_A 144 TAVIVA---------------------------------------RNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGM 184 (287)
T ss_dssp EEEEEE---------------------------------------ETTEEEEEEEEECCBCTTHHHHHHHHHHTTCEEEE
T ss_pred EEEEEE---------------------------------------ECCEEEEEEEECCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 599999---------------------------------------99989999995453614189999999977985999
Q ss_pred ECCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEE
Q ss_conf 93898666999998756443793499991788754334304579999999986356876402111135768989969999
Q 001740 722 LTGDKMETAINIGFACSLLRQGMRQVIISSETPESKTLEKSEDKSAAAAALKASVLHQLIRGKELLDSSNESLGPLALII 801 (1019)
Q Consensus 722 lTGD~~~ta~~ia~~~gi~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvi 801 (1019)
+||+....+..+...+|+..
T Consensus 185 ~T~~~~~~~~~~l~~~gl~~------------------------------------------------------------ 204 (287)
T 3a1c_A 185 ITGDNWRSAEAISRELNLDL------------------------------------------------------------ 204 (287)
T ss_dssp ECSSCHHHHHHHHHHHTCSE------------------------------------------------------------
T ss_pred EECCCHHHHHHHHHHHCCCE------------------------------------------------------------
T ss_conf 90989899999999809813------------------------------------------------------------
Q ss_pred CCCHHHHHCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHCCCCCEEECCCCCH
Q ss_conf 35013463038899999999720572089825920199999999720898399983997792333104844023287401
Q 001740 802 DGKSLTYALEDDVKDLFLELAIGCASVICCRSSPKQKALVTRLVKTKTSSTTLAIGDGANDVGMLQEADIGVGISGVEGM 881 (1019)
Q Consensus 802 ~G~~l~~~l~~~~~~~~~~~~~~~~~vv~~r~sp~qK~~iV~~lk~~~g~~vlaiGDG~ND~~ml~~AdvGIai~g~~~~ 881 (1019)
.|..+.|..|...++.+.. . ..+++|||+.||+.|.+.|+++|++. +...
T Consensus 205 ---------------------------~f~~i~~~~K~~~~~~l~~-~-~~~~~vGDs~~Di~~a~~ag~~v~~~-~~~~ 254 (287)
T 3a1c_A 205 ---------------------------VIAEVLPHQKSEEVKKLQA-K-EVVAFVGDGINDAPALAQADLGIAVG-SGSD 254 (287)
T ss_dssp ---------------------------EECSCCTTCHHHHHHHHTT-T-CCEEEEECTTTCHHHHHHSSEEEEEC-CCSC
T ss_pred ---------------------------EEEECCHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHHHCCEEEEEC-CCCH
T ss_conf ---------------------------1100581779999999825-8-83999979777899999789529967-8877
Q ss_pred HHHHCCCEEC--CCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 3422165410--1301168999886355776878
Q 001740 882 QAVMSSDIAI--AQFRFLERLLLVHGHWCYRRIS 913 (1019)
Q Consensus 882 ~a~~~aD~vi--~~f~~l~~lll~~Gr~~~~~~~ 913 (1019)
.....+|+++ .++..+..+ +..+|..+++++
T Consensus 255 ~~~~~ad~v~~~~~~~~l~~~-l~~~~~~~~~i~ 287 (287)
T 3a1c_A 255 VAVESGDIVLIRDDLRDVVAA-IQLSRKTMSKIK 287 (287)
T ss_dssp CSSCCSSEEESSSCTHHHHHH-HHTTC-------
T ss_pred HHHHHCCEEEECCCHHHHHHH-HHHHHHHHHHHC
T ss_conf 889629999947998999999-999999998509
Done!