BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001741
(1018 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
pdb|1F3M|D Chain D, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
pdb|1YHW|A Chain A, Crystal Structure Of Pak1 Kinase Domain With One Point
Mutations (K299r)
Length = 297
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 58/160 (36%), Gaps = 34/160 (21%)
Query: 867 QLVEALKYVTKALVALHDLSFMHKDLSWDKVMRRSDRENEWFVSGFDEAASAPQIYPQLX 926
Q+ + +AL LH +H+D+ D ++ D + GF QI P+
Sbjct: 117 QIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGF-----CAQITPE-Q 170
Query: 927 XXXXXXXXXXXXXXPEMGRPGLHGVKVDVWGVG----------------------QLVKT 964
PE+ +G KVD+W +G L+ T
Sbjct: 171 SKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIAT 230
Query: 965 CG---LSNVPKM---LRELQNRCLDQNPELRPTAADCYHH 998
G L N K+ R+ NRCLD + E R +A + H
Sbjct: 231 NGTPELQNPEKLSAIFRDFLNRCLDMDVEKRGSAKELLQH 270
>pdb|1YHV|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Two Point
Mutations (K299r, T423e)
pdb|2HY8|1 Chain 1, Pak1 Complex With St2001
Length = 297
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 58/160 (36%), Gaps = 34/160 (21%)
Query: 867 QLVEALKYVTKALVALHDLSFMHKDLSWDKVMRRSDRENEWFVSGFDEAASAPQIYPQLX 926
Q+ + +AL LH +H+D+ D ++ D + GF QI P+
Sbjct: 117 QIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGF-----CAQITPE-Q 170
Query: 927 XXXXXXXXXXXXXXPEMGRPGLHGVKVDVWGVG----------------------QLVKT 964
PE+ +G KVD+W +G L+ T
Sbjct: 171 SKRSEMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIAT 230
Query: 965 CG---LSNVPKM---LRELQNRCLDQNPELRPTAADCYHH 998
G L N K+ R+ NRCLD + E R +A + H
Sbjct: 231 NGTPELQNPEKLSAIFRDFLNRCLDMDVEKRGSAKELLQH 270
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 7/107 (6%)
Query: 864 SCEQLVEALKYVTKALVALHDLSFMHKDLSWDKVMRRSDRENEWFVSGFDEAASAPQIYP 923
S ++ VE ++ V K L +H+ +++H DL + +M + R NE + F A + P
Sbjct: 147 SEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTA---HLDP 203
Query: 924 QLXXXXXXXXXXXXXXXPEMGRPGLHGVKVDVWGVGQL--VKTCGLS 968
+ G+P G D+W VG L + GLS
Sbjct: 204 KQSVKVTTGTAEFAAPEVAEGKPV--GYYTDMWSVGVLSYILLSGLS 248
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 7/107 (6%)
Query: 864 SCEQLVEALKYVTKALVALHDLSFMHKDLSWDKVMRRSDRENEWFVSGFDEAASAPQIYP 923
S ++ VE ++ V K L +H+ +++H DL + +M + R NE + F A + P
Sbjct: 253 SEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTA---HLDP 309
Query: 924 QLXXXXXXXXXXXXXXXPEMGRPGLHGVKVDVWGVGQL--VKTCGLS 968
+ PE+ G D+W VG L + GLS
Sbjct: 310 K--QSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLS 354
>pdb|3FXZ|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium
Complex Lambda-Fl172
pdb|3FY0|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium
Complex Dw1
pdb|4DAW|A Chain A, Crystal Structure Of Pak1 Kinase Domain With The Ruthenium
Phthalimide Complex
Length = 297
Score = 33.1 bits (74), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 59/160 (36%), Gaps = 34/160 (21%)
Query: 867 QLVEALKYVTKALVALHDLSFMHKDLSWDKVMRRSDRENEWFVSGFDEAASAPQIYPQLX 926
Q+ + +AL LH +H+D+ D ++ D + GF QI P+
Sbjct: 117 QIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGF-----CAQITPE-Q 170
Query: 927 XXXXXXXXXXXXXXPEMGRPGLHGVKVDVWGVG----------------------QLVKT 964
PE+ +G KVD+W +G L+ T
Sbjct: 171 SKRSXMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIAT 230
Query: 965 CG---LSNVPKM---LRELQNRCLDQNPELRPTAADCYHH 998
G L N K+ R+ NRCL+ + E R +A + H
Sbjct: 231 NGTPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQH 270
>pdb|3Q52|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain
pdb|3Q53|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain In Complex
With Atp
Length = 306
Score = 33.1 bits (74), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 59/160 (36%), Gaps = 34/160 (21%)
Query: 867 QLVEALKYVTKALVALHDLSFMHKDLSWDKVMRRSDRENEWFVSGFDEAASAPQIYPQLX 926
Q+ + +AL LH +H+D+ D ++ D + GF QI P+
Sbjct: 118 QIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGF-----CAQITPE-Q 171
Query: 927 XXXXXXXXXXXXXXPEMGRPGLHGVKVDVWGVG----------------------QLVKT 964
PE+ +G KVD+W +G L+ T
Sbjct: 172 SKRSXMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIAT 231
Query: 965 CG---LSNVPKM---LRELQNRCLDQNPELRPTAADCYHH 998
G L N K+ R+ NRCL+ + E R +A + H
Sbjct: 232 NGTPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELIQH 271
>pdb|2C30|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 6
Length = 321
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 59/161 (36%), Gaps = 34/161 (21%)
Query: 866 EQLVEALKYVTKALVALHDLSFMHKDLSWDKVMRRSDRENEWFVSGFDEAASAPQIYPQL 925
EQ+ + V +AL LH +H+D+ D ++ D + +S F A + P+
Sbjct: 141 EQIATVCEAVLQALAYLHAQGVIHRDIKSDSILLTLDGRVK--LSDFGFCAQISKDVPK- 197
Query: 926 XXXXXXXXXXXXXXXPEMGRPGLHGVKVDVWGVGQLV----------------------- 962
PE+ L+ +VD+W +G +V
Sbjct: 198 ---RKXLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSPVQAMKRLR 254
Query: 963 -----KTCGLSNVPKMLRELQNRCLDQNPELRPTAADCYHH 998
K V +LR+ R L ++P+ R TA + H
Sbjct: 255 DSPPPKLKNSHKVSPVLRDFLERMLVRDPQERATAQELLDH 295
>pdb|3Q4Z|A Chain A, Structure Of Unphosphorylated Pak1 Kinase Domain
pdb|3Q4Z|B Chain B, Structure Of Unphosphorylated Pak1 Kinase Domain
Length = 306
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 58/160 (36%), Gaps = 34/160 (21%)
Query: 867 QLVEALKYVTKALVALHDLSFMHKDLSWDKVMRRSDRENEWFVSGFDEAASAPQIYPQLX 926
Q+ + +AL LH +H+++ D ++ D + GF QI P+
Sbjct: 118 QIAAVCRECLQALEFLHSNQVIHRNIKSDNILLGMDGSVKLTDFGF-----CAQITPE-Q 171
Query: 927 XXXXXXXXXXXXXXPEMGRPGLHGVKVDVWGVG----------------------QLVKT 964
PE+ +G KVD+W +G L+ T
Sbjct: 172 SKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIAT 231
Query: 965 CG---LSNVPKM---LRELQNRCLDQNPELRPTAADCYHH 998
G L N K+ R+ NRCL+ + E R +A + H
Sbjct: 232 NGTPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELIQH 271
>pdb|2F57|A Chain A, Crystal Structure Of The Human P21-activated Kinase 5
pdb|2F57|B Chain B, Crystal Structure Of The Human P21-activated Kinase 5
Length = 317
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
Query: 866 EQLVEALKYVTKALVALHDLSFMHKDLSWDKVMRRSDRENEWFVSGFDEAASAPQIYPQL 925
EQ+ V +AL LH+ +H+D+ D ++ SD + +S F A + P+
Sbjct: 141 EQIATVCLSVLRALSYLHNQGVIHRDIKSDSILLTSDGRIK--LSDFGFCAQVSKEVPK- 197
Query: 926 XXXXXXXXXXXXXXXPEMGRPGLHGVKVDVWGVGQLV 962
PE+ +G +VD+W +G +V
Sbjct: 198 ---RKXLVGTPYWMAPEVISRLPYGTEVDIWSLGIMV 231
>pdb|3DAK|A Chain A, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|B Chain B, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|C Chain C, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|D Chain D, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
Length = 290
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 967 LSNVPKMLRELQNRCLDQNPELRPTAADCYHH 998
L K R++ + CL ++PE RPTAA+ H
Sbjct: 252 LKKYGKSFRKMISLCLQKDPEKRPTAAELLRH 283
>pdb|2VWI|A Chain A, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|B Chain B, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|C Chain C, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|D Chain D, Structure Of The Osr1 Kinase, A Hypertension Drug Target
Length = 303
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 967 LSNVPKMLRELQNRCLDQNPELRPTAADCYHH 998
L K R++ + CL ++PE RPTAA+ H
Sbjct: 257 LKKYGKSFRKMISLCLQKDPEKRPTAAELLRH 288
>pdb|2IFT|A Chain A, Crystal Structure Of Putative Methylase Hi0767 From
Haemophilus Influenzae. Nesg Target Ir102.
pdb|2IFT|B Chain B, Crystal Structure Of Putative Methylase Hi0767 From
Haemophilus Influenzae. Nesg Target Ir102
Length = 201
Score = 30.0 bits (66), Expect = 7.2, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 664 QWPNVTGFVRNLC-LWRGEETDQLKEGQLDPSSSIVEKLLWTYMDLPY------LFGYYA 716
Q PN G VR + LWRG + L L P+ V++ L+ ++ PY L G+
Sbjct: 5 QTPNAKGEVRIIAGLWRGRKLPVLNSEGLRPTGDRVKETLFNWL-XPYIHQSECLDGFAG 63
Query: 717 VGYIVTFCALSRSQDRVVRTDL 738
G + F ALSR +V +L
Sbjct: 64 SGSL-GFEALSRQAKKVTFLEL 84
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,282,533
Number of Sequences: 62578
Number of extensions: 989797
Number of successful extensions: 2434
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2423
Number of HSP's gapped (non-prelim): 14
length of query: 1018
length of database: 14,973,337
effective HSP length: 108
effective length of query: 910
effective length of database: 8,214,913
effective search space: 7475570830
effective search space used: 7475570830
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)