Query 001744
Match_columns 1018
No_of_seqs 260 out of 640
Neff 3.9
Searched_HMMs 29240
Date Tue Mar 26 16:12:54 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001744.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1042-1045//hhsearch_pdb/001744hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t5v_A Nuclear mRNA export pro 1.0 1 1 424.9 22.7 212 742-972 1-256 (316)
2 4b0z_A RPN12, 26S proteasome r 1.0 1 1 293.6 21.8 194 766-979 20-226 (229)
3 4b4t_T 26S proteasome regulato 1.0 1 1 291.7 11.6 195 766-980 17-236 (274)
4 1rz4_A Eukaryotic translation 1.0 1 1 98.3 17.0 167 788-978 20-188 (226)
5 3txn_A 26S proteasome regulato 1.0 1 1 49.0 16.1 143 794-939 180-330 (394)
6 4b4t_R RPN7, 26S proteasome re 1.0 1 1 42.5 11.8 140 795-940 209-362 (429)
7 4b4t_O 26S proteasome regulato 1.0 1 1 34.4 17.3 166 768-939 142-321 (393)
8 4b4t_P 26S proteasome regulato 1.0 1 1 33.2 15.1 153 791-964 215-382 (445)
9 3chm_A COP9 signalosome comple 1.0 1 1 31.5 6.8 80 869-968 58-141 (169)
10 3t5x_A PCI domain-containing p 1.0 1 1 30.1 8.9 169 797-984 17-194 (203)
No 1
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=424.91 Aligned_cols=212 Identities=26% Similarity=0.403 Sum_probs=193.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHH-----CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH------CCC-
Q ss_conf 999999999999999999999820-----11257688887667786646311561469999999999963------499-
Q 001744 742 SAPDPSTVRPEEVLEKALQMVQNS-----QKNYLYKCDQLKSIRQDLTVQRIRNQLTAKVYETHARLAIE------NGD- 809 (1018)
Q Consensus 742 aaPdPsdVRPp~VL~KTL~yLl~k-----~~~Y~FI~DRLRSIRQDLTVQ~IrneFTV~VYE~hARiALe------agD- 809 (1018)
++|+|++|||++||++||+||+.+ ..+|+||||||||||||||||+|+++|+|+|||+||||||+ .+|
T Consensus 1 ~~P~P~~vRP~~vL~~Tl~yL~~~~~~~~~~~y~fi~Dr~RsIRqDltvQ~i~~~~~v~v~E~~aRf~i~~~~~L~~~~~ 80 (316)
T 3t5v_A 1 GSPLPSDVRPPHILVKTLDYIVDNLLTTLPESEGFLWDRMRSIRQDFTYQNYSGPEAVDCNERIVRIHLLILHIMVKSNV 80 (316)
T ss_dssp -----CCCCCHHHHHHHHHHHHHHTGGGTTTCHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 98983535999999999999999987005213689986266644485003658951799999999999999999710787
Q ss_pred -------HHHHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
Q ss_conf -------235999999999999718-----67785689999999986305856999999996029983197799999999
Q 001744 810 -------LPEYNQCQSQLKILYAEG-----IEGCCMEFSAYHLLCVILHSNNKRELLSLMSRLSDKAKQDKAVKHALAVR 877 (1018)
Q Consensus 810 -------LeEFNQCQsQLk~LY~eg-----i~gnE~EF~AYrILY~Ll~~~N~~eLls~L~~Lp~eik~dp~VkfALkVr 877 (1018)
++++++|+.+|+.||++. ..+|++||+||+|||+|.+ .++...+..||++++++|.|+|||.|+
T Consensus 81 ~f~~~~~~eQl~~~L~sL~~lY~d~~~~~~~~~ne~EF~aY~lL~~l~~----~~~~~~l~~Lp~~i~~~p~Vq~AL~l~ 156 (316)
T 3t5v_A 81 EFSLQQELEQLHKSLITLSEIYDDVRSSGGTCPNEAEFRAYALLSKIRD----PQYDENIQRLPKHIFQDKLVQMALCFR 156 (316)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHSTTC----THHHHHHTTSCHHHHTSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHCCHHHHCCHHHHHHHHHH
T ss_conf 6145778999999999999999987533789987899999999998556----368999985799886698888999999
Q ss_pred HHHH---------------HCCHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCHHHHHHHHCC
Q ss_conf 9998---------------0989999999920--99259999999999999999999998739---99897999984179
Q 001744 878 AAVS---------------SGNYIMFFRLYKT--APNLNTCLMDLYVEKMRFKAVSCMSRSYR---PTVPVSYVAQVLGF 937 (1018)
Q Consensus 878 sAla---------------~GNYvRFFKLyks--AP~L~acLMd~fv~riR~~ALk~I~KAYr---ptIPLs~LaelLgF 937 (1018)
.|+. +|||+|||+|+++ +|+|++|||++||+++|..||++|++||+ +++|+++|+++|+|
T Consensus 157 ~a~~~~~~~e~~~~~~~~~~gNY~rFFrL~~~~~~pyL~aclle~~~~~vR~~AL~~i~kay~~k~~~~pl~~L~~~L~F 236 (316)
T 3t5v_A 157 RVISNSAYTERGFVKTENCLNFYARFFQLMQSPSLPLLMGFFLQMHLTDIRFYALRALSHTLNKKHKPIPFIYLENMLLF 236 (316)
T ss_dssp HHHCCTTCCCTTCCCCSSCCCCHHHHHHHHTCTTSCHHHHHHHGGGHHHHHHHHHHHHHHHSCTTCCCEEHHHHHHHTTC
T ss_pred HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCC
T ss_conf 99973131003532233233559999999826689759999999999999999999999996668999689999998389
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEC
Q ss_conf 89999973221236888899999999909948527
Q 001744 938 TGVSPTNEECEERDSDGLEECVEWLKAHGASLVTD 972 (1018)
Q Consensus 938 es~d~~~~~~e~~~~~~LEEc~eFLk~~Gl~v~~D 972 (1018)
+++ +||++||+.||+.++.|
T Consensus 237 ds~---------------ee~~~F~~~~gl~~~~~ 256 (316)
T 3t5v_A 237 NNR---------------QEIIEFCNYYSIEIING 256 (316)
T ss_dssp SSH---------------HHHHHHHHHTTCCEETT
T ss_pred CCH---------------HHHHHHHHHCCCEEECC
T ss_conf 999---------------99999999879767689
No 2
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=293.60 Aligned_cols=194 Identities=16% Similarity=0.295 Sum_probs=178.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC--CCHHHH
Q ss_conf 112576888876677866463115--------6146999999999996349923599999999999971867--785689
Q 001744 766 QKNYLYKCDQLKSIRQDLTVQRIR--------NQLTAKVYETHARLAIENGDLPEYNQCQSQLKILYAEGIE--GCCMEF 835 (1018)
Q Consensus 766 ~~~Y~FI~DRLRSIRQDLTVQ~Ir--------neFTV~VYE~hARiALeagDLeEFNQCQsQLk~LY~egi~--gnE~EF 835 (1018)
.++|+++++.|+.||+|||+|++. ..++++|||++||++|+.+|+++||||++||+.+|.+++. +++.||
T Consensus 20 ~~d~~~~~~lL~~lk~~L~~~~~~~p~~~~~~~~~ar~vyE~~a~~al~~~D~~~F~~~~~qLk~~Y~~~~~~s~~~~e~ 99 (229)
T 4b0z_A 20 RKDWNACKKELLKLKVELAKQNLFVPTSDKEKASFARNVFEYGVLVSIQTCDIESFARYASQVIPFYHDSLVPSSRMGLV 99 (229)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCSSCCSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSCCCCCTTHHHH
T ss_pred HCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHH
T ss_conf 60599999999999999986677899888378999999999999999982999999999999999987338898639999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHH-HHHHHHHHHHHHHH
Q ss_conf 9999999863058569999999960299--83197799999999999809899999999209925-99999999999999
Q 001744 836 SAYHLLCVILHSNNKRELLSLMSRLSDK--AKQDKAVKHALAVRAAVSSGNYIMFFRLYKTAPNL-NTCLMDLYVEKMRF 912 (1018)
Q Consensus 836 ~AYrILY~Ll~~~N~~eLls~L~~Lp~e--ik~dp~VkfALkVrsAla~GNYvRFFKLyksAP~L-~acLMd~fv~riR~ 912 (1018)
++|+|||.+.+ ++..|++..+..++.+ ++++|+|+||++|++|+++|||++||++++++|.+ .+|+|+++++++|.
T Consensus 100 ~~~~LL~lL~~-~~~~ef~~~le~l~~~~~~~~~~~I~~al~l~~al~~GnY~kff~l~~~~p~~~~~~~~~~l~~~vR~ 178 (229)
T 4b0z_A 100 TGLNLLYLLSE-NRIAEFHTALESVPDKSLFERDPYVEWVISLEQNVMEGAFDKVASMIRSCNFPEFSYFMKIVMSMVRN 178 (229)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHCSCTTHHHHCHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC-CCCHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999985-99068999998568587753497999999999999868999999998518631578999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCEEE
Q ss_conf 9999999873999897999984179899999732212368888999999999099485279996477
Q 001744 913 KAVSCMSRSYRPTVPVSYVAQVLGFTGVSPTNEECEERDSDGLEECVEWLKAHGASLVTDANGEVQL 979 (1018)
Q Consensus 913 ~ALk~I~KAYrptIPLs~LaelLgFes~d~~~~~~e~~~~~~LEEc~eFLk~~Gl~v~~D~~Ge~~i 979 (1018)
.+|+||+|||. +||+.+++++|+|+++ +||++|++.+||.+. +|.+++
T Consensus 179 ~~l~~i~kaY~-~i~l~~~~~~L~f~s~---------------~e~~~f~~~~gw~i~---dg~i~F 226 (229)
T 4b0z_A 179 EIATCAEKVYS-EIPLSNATSLLYLENT---------------KETEKLAEERGWDIR---DGVIYF 226 (229)
T ss_dssp HHHHHHHHHCS-EEEHHHHHHHTTCSSH---------------HHHHHHHHHHTCEEE---TTEEEC
T ss_pred HHHHHHHHHCC-CCCHHHHHHHHCCCCH---------------HHHHHHHHHCCCEEE---CCEEEC
T ss_conf 99999999828-8889999999689999---------------999999998599776---999753
No 3
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=291.67 Aligned_cols=195 Identities=17% Similarity=0.237 Sum_probs=173.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCC------------H--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC---
Q ss_conf 1125768888766778664631156------------1--4699999999999634992359999999999997186---
Q 001744 766 QKNYLYKCDQLKSIRQDLTVQRIRN------------Q--LTAKVYETHARLAIENGDLPEYNQCQSQLKILYAEGI--- 828 (1018)
Q Consensus 766 ~~~Y~FI~DRLRSIRQDLTVQ~Irn------------e--FTV~VYE~hARiALeagDLeEFNQCQsQLk~LY~egi--- 828 (1018)
..+|..+++.|..++++|+.+++.. + ++++|||+|||++|+.+|+++||||++||+.+|.+..
T Consensus 17 ~~d~~~~~~lL~~lK~~L~~~~~l~p~~~~~~~~~~~el~~ar~v~E~~a~~si~~~D~~~F~~~~~QLk~~Y~d~~~~l 96 (274)
T 4b4t_T 17 NGDYAACEKLLPPIKIELIKNNLLIPDLSIQNDIYLNDLMITKRILEVGALASIQTFNFDSFENYFNQLKPYYFSNNHKL 96 (274)
T ss_dssp --------------------------------------------CHHHHHHCCSSCSSHHHHHHHHHHHHHHTTTTSSCS
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 36999999999999999985567688877765027999999999999999999984999999999999999997322359
Q ss_pred --CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCH---HHH
Q ss_conf --7785689999999986305856999999996029---98319779999999999980989999999920992---599
Q 001744 829 --EGCCMEFSAYHLLCVILHSNNKRELLSLMSRLSD---KAKQDKAVKHALAVRAAVSSGNYIMFFRLYKTAPN---LNT 900 (1018)
Q Consensus 829 --~gnE~EF~AYrILY~Ll~~~N~~eLls~L~~Lp~---eik~dp~VkfALkVrsAla~GNYvRFFKLyksAP~---L~a 900 (1018)
.+++.||+||+|||++.+ ++..||+..|..|+. +++++++|+||++|++++++|||++||+|++++|. +.+
T Consensus 97 ~~s~~~~e~~~~~LLylL~~-n~~~efh~~Le~L~~~~~~~~~d~~Ik~al~le~al~eGnY~kff~l~~~~~~p~~~~~ 175 (274)
T 4b4t_T 97 SESDKKSKLISLYLLNLLSQ-NNTTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNISEFD 175 (274)
T ss_dssp SCSHHHHHHHHHHHHHHHHH-HCSTHHHHHHHSSSCSSSTTTCCHHHHHHHHHHHHHHHTCSHHHHHHHHTCTTCCHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHC-CCHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHH
T ss_conf 99853789999999999986-98899999999614446757249077889999999985999999999865899938899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCEEEE
Q ss_conf 99999999999999999998739998979999841798999997322123688889999999990994852799964773
Q 001744 901 CLMDLYVEKMRFKAVSCMSRSYRPTVPVSYVAQVLGFTGVSPTNEECEERDSDGLEECVEWLKAHGASLVTDANGEVQLD 980 (1018)
Q Consensus 901 cLMd~fv~riR~~ALk~I~KAYrptIPLs~LaelLgFes~d~~~~~~e~~~~~~LEEc~eFLk~~Gl~v~~D~~Ge~~iD 980 (1018)
|+|+++++++|..++.||+|||+ +||+.+++++|+|+++ +||.+|++.+||.+. +|.+++.
T Consensus 176 ~f~d~l~~~iR~~a~~~i~kaY~-~i~l~~~~~~L~F~s~---------------~e~~~F~~~~gW~~~---~~~v~F~ 236 (274)
T 4b4t_T 176 SFTDILKSAIRDEIAKNTELSYD-FLPLSNIKALLFFNNE---------------KETEKFALERNWPIV---NSKVYFN 236 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCS-SCCHHHHHHHHTCCSH---------------HHHHHHHHHTTCCCC---SSCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHHCCCCH---------------HHHHHHHHHCCCEEE---CCEEEEC
T ss_conf 99999999999999999999874-2479999999589999---------------999999998598786---9975877
No 4
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=1.00 E-value=1 Score=98.32 Aligned_cols=167 Identities=13% Similarity=0.159 Sum_probs=131.2
Q ss_pred CCCHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 156146999999999996349--923599999999999971867785689999999986305856999999996029983
Q 001744 788 IRNQLTAKVYETHARLAIENG--DLPEYNQCQSQLKILYAEGIEGCCMEFSAYHLLCVILHSNNKRELLSLMSRLSDKAK 865 (1018)
Q Consensus 788 IrneFTV~VYE~hARiALeag--DLeEFNQCQsQLk~LY~egi~gnE~EF~AYrILY~Ll~~~N~~eLls~L~~Lp~eik 865 (1018)
.-|...+.++|......++.. |++ -+++ |..||.-.-.....++.+..||..|.+ ....||+..+..||..+.
T Consensus 20 rYnp~~l~~le~Yv~qq~~~~~YD~~---anla-lLklYq~~p~~~~~~ii~~iLlk~L~~-~p~~DF~~~l~LIp~~~~ 94 (226)
T 1rz4_A 20 RYNPENLATLERYVETQAKENAYDLE---ANLA-VLKLYQFNPAFFQTTVTAQILLKALTN-LPHTDFTLCKCMIDQAHQ 94 (226)
T ss_dssp GGCGGGHHHHHHHHHHHHHHTCCCHH---HHHH-HHHHHHHSGGGCCHHHHHHHHHHHHHT-TTSTHHHHHHHTSCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCHH---HHHH-HHHHHHCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHCCHHHH
T ss_conf 27877788999999999752565678---8999-998872597533063999999999876-887878887984776542
Q ss_pred HCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 19779999999999980989999999920992599999999999999999999987399989799998417989999973
Q 001744 866 QDKAVKHALAVRAAVSSGNYIMFFRLYKTAPNLNTCLMDLYVEKMRFKAVSCMSRSYRPTVPVSYVAQVLGFTGVSPTNE 945 (1018)
Q Consensus 866 ~dp~VkfALkVrsAla~GNYvRFFKLyksAP~L~acLMd~fv~riR~~ALk~I~KAYrptIPLs~LaelLgFes~d~~~~ 945 (1018)
.++.|+..+.|...++.|+|.+||+.++.-+.+ ...+..|.+.+|..++.++.+||. +|++..++++||+.++
T Consensus 95 ~~~~I~~i~~L~~~L~~~~y~~fW~~l~~~~~l-~~~i~gf~dsIR~~I~~~i~~aY~-sI~~~~la~lLg~~s~----- 167 (226)
T 1rz4_A 95 EERPIRQILYLGDLLETCHFQAFWQALDENMDL-LEGITGFEDSVRKFICHVVGITYQ-HIDRWLLAEMLGDLSD----- 167 (226)
T ss_dssp TSTTHHHHHHHHHHHHTTCHHHHHHHSCTTCHH-HHTSTTHHHHHHHHHHHHHHHHCS-EECHHHHHHHTTSCCH-----
T ss_pred CCHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHHCCCCH-----
T ss_conf 197789999999999769999999998517367-878768999999999999999980-0799999998769998-----
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCEEEECCCCCEE
Q ss_conf 221236888899999999909948527999647
Q 001744 946 ECEERDSDGLEECVEWLKAHGASLVTDANGEVQ 978 (1018)
Q Consensus 946 ~~e~~~~~~LEEc~eFLk~~Gl~v~~D~~Ge~~ 978 (1018)
+++.+|++..||.+ |++|.+.
T Consensus 168 ----------~el~~fi~~~GW~v--d~~g~I~ 188 (226)
T 1rz4_A 168 ----------SQLKVWMSKYGWSA--DESGQIF 188 (226)
T ss_dssp ----------HHHHHHHHHHTCEE--CC--CEE
T ss_pred ----------HHHHHHHHHCCCEE--CCCCCEE
T ss_conf ----------99999999888978--7996077
No 5
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=1.00 E-value=1 Score=48.96 Aligned_cols=143 Identities=14% Similarity=0.097 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH-HHHHHHHCHHHH
Q ss_conf 999999999996-349923599999999999971867785689999999986305856999999996-029983197799
Q 001744 794 AKVYETHARLAI-ENGDLPEYNQCQSQLKILYAEGIEGCCMEFSAYHLLCVILHSNNKRELLSLMSR-LSDKAKQDKAVK 871 (1018)
Q Consensus 794 V~VYE~hARiAL-eagDLeEFNQCQsQLk~LY~egi~gnE~EF~AYrILY~Ll~~~N~~eLls~L~~-Lp~eik~dp~Vk 871 (1018)
-.+.+....+++ ..+|+.+=..++-.-..-|.+...+....+.-|.+|+.|+. ....|+...+.. .... ..+|.|.
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~-~~r~el~~~l~~~~~~~-~~~pei~ 257 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIML-GQSDDVNQLVSGKLAIT-YSGRDID 257 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT-TCGGGHHHHHHSHHHHT-TCSHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHC-CCHHHHHHHHCCCCCCC-CCCCCHH
T ss_conf 999998248888743479999999999872536335577899999999999984-99889999963420001-5793279
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCC
Q ss_conf 999999999809899999999209------92599999999999999999999987399989799998417989
Q 001744 872 HALAVRAAVSSGNYIMFFRLYKTA------PNLNTCLMDLYVEKMRFKAVSCMSRSYRPTVPVSYVAQVLGFTG 939 (1018)
Q Consensus 872 fALkVrsAla~GNYvRFFKLyksA------P~L~acLMd~fv~riR~~ALk~I~KAYrptIPLs~LaelLgFes 939 (1018)
....+..|+..+++.+|+.+.... +....-.+..+..++|..+|..+.+.|. .|.+.+|++.|+++.
T Consensus 258 ~l~~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~~~L~~i~~pYs-rIsl~~iA~~l~ls~ 330 (394)
T 3txn_A 258 AMKSVAEASHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIEPYS-RVQVAHVAESIQLPM 330 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHTTCS-EEEHHHHHHHHTCCH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHC-EEEHHHHHHHHCCCH
T ss_conf 9999999987078999999999999998438689999999999999999999957443-011999999979099
No 6
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=42.53 Aligned_cols=140 Identities=15% Similarity=0.181 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH---HHHHHCH
Q ss_conf 999999999963499235999999999999718-677--8568999999998630585699999999602---9983197
Q 001744 795 KVYETHARLAIENGDLPEYNQCQSQLKILYAEG-IEG--CCMEFSAYHLLCVILHSNNKRELLSLMSRLS---DKAKQDK 868 (1018)
Q Consensus 795 ~VYE~hARiALeagDLeEFNQCQsQLk~LY~eg-i~g--nE~EF~AYrILY~Ll~~~N~~eLls~L~~Lp---~eik~dp 868 (1018)
.+.+..+++++..+++.+ ...-+.+.+... ..+ ....+.-|.+|+.+.. ....++...+..-+ .-+...|
T Consensus 209 ~lk~~~gl~~l~~r~f~~---Aa~~f~e~~~t~~~~e~~~~~~~~~y~~l~al~~-~~r~~l~~~v~~~~~~~~~l~~~p 284 (429)
T 4b4t_R 209 RYKTYYGIHCLAVRNFKE---AAKLLVDSLATFTSIELTSYESIATYASVTGLFT-LERTDLKSKVIDSPELLSLISTTA 284 (429)
T ss_dssp HHHHHHHHGGGGTSCHHH---HHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHT-TCHHHHHHSSSSSHHHHHGGGSHH
T ss_pred HHHHHHHHHHHHHCHHHH---HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHCCHHHHHHCCCCH
T ss_conf 999999999988585999---9999998726678300036779999999999844-888889999860888775404785
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHC--------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCC
Q ss_conf 79999999999980989999999920--------9925999999999999999999999873999897999984179899
Q 001744 869 AVKHALAVRAAVSSGNYIMFFRLYKT--------APNLNTCLMDLYVEKMRFKAVSCMSRSYRPTVPVSYVAQVLGFTGV 940 (1018)
Q Consensus 869 ~VkfALkVrsAla~GNYvRFFKLyks--------AP~L~acLMd~fv~riR~~ALk~I~KAYrptIPLs~LaelLgFes~ 940 (1018)
.++-.+.+..++..++|..||..+.. -+++..+ .+.+...+|.++|..+++.|+ .|.+..|++.|+++.+
T Consensus 285 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~d~~l~~h-~~~l~~~ir~~~l~q~~~~Ys-~I~l~~mA~~l~~s~~ 362 (429)
T 4b4t_R 285 ALQSISSLTISLYASDYASYFPYLLETYANVLIPCKYLNRH-ADFFVREMRRKVYAQLLESYK-TLSLKSMASAFGVSVA 362 (429)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHSTTTTTCTTSTTT-HHHHHHHHHHHHHHHHHHTCS-EEEHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHC-EEEHHHHHHHHCCCHH
T ss_conf 58999999999984158899999999987564047788999-999999999999999968854-2029999999692999
No 7
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=34.45 Aligned_cols=166 Identities=16% Similarity=0.149 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHH
Q ss_conf 2576888876677866463-11561469999999999963499235999999999999718--67785689999999986
Q 001744 768 NYLYKCDQLKSIRQDLTVQ-RIRNQLTAKVYETHARLAIENGDLPEYNQCQSQLKILYAEG--IEGCCMEFSAYHLLCVI 844 (1018)
Q Consensus 768 ~Y~FI~DRLRSIRQDLTVQ-~IrneFTV~VYE~hARiALeagDLeEFNQCQsQLk~LY~eg--i~gnE~EF~AYrILY~L 844 (1018)
+..-+...++.++.-|--. .+.......+|+..+.++-..++..+|..+...-..+|... +...+..-.+|.++..+
T Consensus 142 d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~a 221 (393)
T 4b4t_O 142 DLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLEPSTSITLAERQQLAYDLSISA 221 (393)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSSCSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 79999999999997642368855889999999999999986438999999999875413422279999999999999999
Q ss_pred HCCC---CHHHHHHHHHHHHH--HHHHCHHHHHHHHHHHHHHHCCHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 3058---56999999996029--9831977999999999998098999999992----0992599999999999999999
Q 001744 845 LHSN---NKRELLSLMSRLSD--KAKQDKAVKHALAVRAAVSSGNYIMFFRLYK----TAPNLNTCLMDLYVEKMRFKAV 915 (1018)
Q Consensus 845 l~~~---N~~eLls~L~~Lp~--eik~dp~VkfALkVrsAla~GNYvRFFKLyk----sAP~L~acLMd~fv~riR~~AL 915 (1018)
+-.. +-++++. .|. .+..++.+..-+++..+|..|++..|..+.+ ..|.+.. -......++|..+|
T Consensus 222 ll~~~i~~f~eLL~----~p~i~~L~~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~~~~~~~~l~~-~~~~l~~kirll~l 296 (393)
T 4b4t_O 222 LLGDKIYNFGELLH----HPIMETIVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQISKIPILAQ-HESFLRQKICLMTL 296 (393)
T ss_dssp HHCCSSCSTHHHHH----SCCTTSSCSSSSTTHHHHHHHHHHHTCHHHHHHHCCHHHHHSHHHHH-HHHHHHHHHHHHHH
T ss_pred HCCCCCCCHHHHHC----CHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHHHH
T ss_conf 81999887588867----84778764697368999999998659999999999871540841122-18999999999999
Q ss_pred HHHHHH--CCCCCCHHHHHHHHCCCC
Q ss_conf 999987--399989799998417989
Q 001744 916 SCMSRS--YRPTVPVSYVAQVLGFTG 939 (1018)
Q Consensus 916 k~I~KA--YrptIPLs~LaelLgFes 939 (1018)
..++.+ |+ .|+.+.|++.|+.+.
T Consensus 297 ~~l~~~~~~~-~i~f~~ia~~l~i~~ 321 (393)
T 4b4t_O 297 IETVFVKNIR-MLSFEDISKATHLPK 321 (393)
T ss_dssp HHHHCSSSCC-CEEHHHHHHHHTCCH
T ss_pred HHHHCCCCCC-CCCHHHHHHHHCCCH
T ss_conf 9875147788-375999998969099
No 8
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=33.17 Aligned_cols=153 Identities=10% Similarity=0.135 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHC
Q ss_conf 14699999999999634992359999999999997186778-5689999999986305--85699999999602998319
Q 001744 791 QLTAKVYETHARLAIENGDLPEYNQCQSQLKILYAEGIEGC-CMEFSAYHLLCVILHS--NNKRELLSLMSRLSDKAKQD 867 (1018)
Q Consensus 791 eFTV~VYE~hARiALeagDLeEFNQCQsQLk~LY~egi~gn-E~EF~AYrILY~Ll~~--~N~~eLls~L~~Lp~eik~d 867 (1018)
+.-...|+..+|++...+|+-+-.+|.-.+...|...-.+. ......+.|+|.++.. +...+++..+.. ....
T Consensus 215 ~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~----~~~~ 290 (445)
T 4b4t_P 215 SLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQN----DNNL 290 (445)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHH----HSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH----CCCC
T ss_conf 999999999789998741299999999999814354479999999999999999828998569999887751----0320
Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHCC-------CHH-----HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 7799999999999809899999999209-------925-----9999999999999999999998739998979999841
Q 001744 868 KAVKHALAVRAAVSSGNYIMFFRLYKTA-------PNL-----NTCLMDLYVEKMRFKAVSCMSRSYRPTVPVSYVAQVL 935 (1018)
Q Consensus 868 p~VkfALkVrsAla~GNYvRFFKLyksA-------P~L-----~acLMd~fv~riR~~ALk~I~KAYrptIPLs~LaelL 935 (1018)
+.+..--.+..+|..++..+|-.+...- +.. ..-.+..+..+++...|..+.+-|. .|.+.+|+++|
T Consensus 291 ~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~L~~~v~ehnl~~i~k~Ys-~I~l~~la~lL 369 (445)
T 4b4t_P 291 KKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHHWEDLQKRVIEHNLRVISEYYS-RITLLRLNELL 369 (445)
T ss_dssp HHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSSCCCSCSSHHHHHHHHHHHHHHHHHHHHHEE-EEEHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHC-EEEHHHHHHHH
T ss_conf 00389999999987665763199999999884645002202103679999999999999999988706-41299999996
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 79899999732212368888999999999
Q 001744 936 GFTGVSPTNEECEERDSDGLEECVEWLKA 964 (1018)
Q Consensus 936 gFes~d~~~~~~e~~~~~~LEEc~eFLk~ 964 (1018)
+++. ++++.++..
T Consensus 370 ~l~~----------------~evE~~ls~ 382 (445)
T 4b4t_P 370 DLTE----------------SQTETYISD 382 (445)
T ss_dssp TSCH----------------HHHHHHHHH
T ss_pred CCCH----------------HHHHHHHHH
T ss_conf 9199----------------999999999
No 9
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=1.00 E-value=1 Score=31.48 Aligned_cols=80 Identities=16% Similarity=0.171 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 79999999999980989999999920992599999999999999999999987399989799998417989999973221
Q 001744 869 AVKHALAVRAAVSSGNYIMFFRLYKTAPNLNTCLMDLYVEKMRFKAVSCMSRSYRPTVPVSYVAQVLGFTGVSPTNEECE 948 (1018)
Q Consensus 869 ~VkfALkVrsAla~GNYvRFFKLyksAP~L~acLMd~fv~riR~~ALk~I~KAYrptIPLs~LaelLgFes~d~~~~~~e 948 (1018)
.-...+++...|..|+|..|-......|.|. +....++|+.+|..|+...+ .+|.+.|++.|...+.
T Consensus 58 ~~~~~~~LL~iF~~G~~~~y~~~~~~~p~L~----~~~~~KlrlLtL~sLa~~~~-~lsy~~I~~~l~i~~~-------- 124 (169)
T 3chm_A 58 TDSVYLDLLRLFAHGTWGDYKCNATRLPHLS----PDQILKLKQLTVLTLAESNK-VLPYDTLMVELDVSNV-------- 124 (169)
T ss_dssp TTHHHHHHHHHHHHCCHHHHHHHGGGSCCCC----HHHHHHHHHHHHHHHHHHCS-EEEHHHHHHHHTCCSH--------
T ss_pred CHHHHHHHHHHHHCCCHHHHHHHHHHCCCHH----HHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHCCCCH--------
T ss_conf 7369999999985699999997477594257----99999999999999997589-7279999988198978--------
Q ss_pred CCCCCCHHHHHHHHH-H---CCCE
Q ss_conf 236888899999999-9---0994
Q 001744 949 ERDSDGLEECVEWLK-A---HGAS 968 (1018)
Q Consensus 949 ~~~~~~LEEc~eFLk-~---~Gl~ 968 (1018)
+|.+.|+- . .|+.
T Consensus 125 -------~evE~lvI~~ai~~gLI 141 (169)
T 3chm_A 125 -------RELEDFLINECMYAGIV 141 (169)
T ss_dssp -------HHHHHHHHHTHHHHTSE
T ss_pred -------HHHHHHHHHHHHHHCCE
T ss_conf -------89999999999981985
No 10
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=1.00 E-value=1 Score=30.05 Aligned_cols=169 Identities=17% Similarity=0.126 Sum_probs=90.1
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHCHHHHHHHH
Q ss_conf 9999999963499235999999999999718677856899999999863058-569999999960299831977999999
Q 001744 797 YETHARLAIENGDLPEYNQCQSQLKILYAEGIEGCCMEFSAYHLLCVILHSN-NKRELLSLMSRLSDKAKQDKAVKHALA 875 (1018)
Q Consensus 797 YE~hARiALeagDLeEFNQCQsQLk~LY~egi~gnE~EF~AYrILY~Ll~~~-N~~eLls~L~~Lp~eik~dp~VkfALk 875 (1018)
+=...|+++..+|..+=.+++.+=...+.+.-.++..-..-|.|+..|+.+. ...+++. .. +...+ ..
T Consensus 17 ~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP~~~ll~---~~-------~~~~y-~~ 85 (203)
T 3t5x_A 17 KYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPTVELLK---KY-------HLMQF-AE 85 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEECHHHHH---HT-------TCGGG-HH
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH---HC-------CHHHH-HH
T ss_conf 999999999984799999999999997778679999999999999999857998989963---07-------25579-99
Q ss_pred HHHHHHHCCHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHH------HCCCCCCHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99999809899999999209-9259999999999999999999998------7399989799998417989999973221
Q 001744 876 VRAAVSSGNYIMFFRLYKTA-PNLNTCLMDLYVEKMRFKAVSCMSR------SYRPTVPVSYVAQVLGFTGVSPTNEECE 948 (1018)
Q Consensus 876 VrsAla~GNYvRFFKLyksA-P~L~acLMd~fv~riR~~ALk~I~K------AYrptIPLs~LaelLgFes~d~~~~~~e 948 (1018)
|..|+..||...|-+.+.+- ..+..+=+...++++|..+++.+.| .|. .||++.|...|.+.+.++
T Consensus 86 L~~Avr~Gdl~~f~~~l~~~~~~f~~~~~~lll~rlr~~v~r~l~rkv~~~~~~~-rI~l~~i~~~l~~~~~~~------ 158 (203)
T 3t5x_A 86 VTRAVSEGNLLLLHEALAKHEAFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTH-QLSLDAFLVALKFMQVED------ 158 (203)
T ss_dssp HHHHHHHTCHHHHHHHHHHTHHHHHHHTCHHHHHTHHHHHHHHHHHHHHHHHCCS-EEEHHHHHHHHHHTTCTT------
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHCCCCC------
T ss_conf 9999995999999999998199999879699999989999999999999855888-455999999998567889------
Q ss_pred CCCCCCHHHHHHHHHHCCCE-EEECCCCCEEEECCCC
Q ss_conf 23688889999999990994-8527999647731576
Q 001744 949 ERDSDGLEECVEWLKAHGAS-LVTDANGEVQLDAKAS 984 (1018)
Q Consensus 949 ~~~~~~LEEc~eFLk~~Gl~-v~~D~~Ge~~iDtK~S 984 (1018)
.+.+..|-.+.-|..-|.. =..|.....+|-.|..
T Consensus 159 -~~~~evE~ila~lI~~G~Ikg~I~~~~~~lVlsk~~ 194 (203)
T 3t5x_A 159 -VDIDEVQCILANLIYMGHVKGYISHQHQKLVVSKQN 194 (203)
T ss_dssp -CCHHHHHHHHHHHHHHTSSCEEEETTTTEEEECSSC
T ss_pred -CCHHHHHHHHHHHHHCCCEEEEECCCCCEEEECCCC
T ss_conf -998999999999997193489983014678877999
Done!