Query 001745
Match_columns 1018
No_of_seqs 685 out of 3975
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 08:19:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001745.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001745hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1145 Mitochondrial translat 100.0 9E-121 2E-125 1026.4 54.3 590 409-1005 65-678 (683)
2 PRK05306 infB translation init 100.0 4E-114 9E-119 1040.4 76.8 567 409-999 220-787 (787)
3 TIGR00487 IF-2 translation ini 100.0 1E-111 3E-116 997.2 68.2 577 409-1000 9-586 (587)
4 COG0532 InfB Translation initi 100.0 2E-112 4E-117 969.9 55.1 506 488-1001 2-508 (509)
5 CHL00189 infB translation init 100.0 3E-111 6E-116 1008.4 68.0 580 409-1000 163-742 (742)
6 PRK04004 translation initiatio 100.0 2.6E-87 5.6E-92 791.9 56.0 481 488-1005 3-566 (586)
7 TIGR00491 aIF-2 translation in 100.0 6.3E-85 1.4E-89 770.2 52.1 476 489-1003 2-562 (590)
8 PRK14845 translation initiatio 100.0 3E-79 6.5E-84 751.0 56.3 537 423-1003 387-1020(1049)
9 KOG1144 Translation initiation 100.0 3E-61 6.6E-66 554.0 31.4 487 488-1005 472-1043(1064)
10 TIGR00475 selB selenocysteine- 100.0 9E-30 1.9E-34 302.6 26.0 230 492-732 1-241 (581)
11 PRK10218 GTP-binding protein; 100.0 7.1E-29 1.5E-33 295.3 32.4 421 489-987 3-480 (607)
12 TIGR01394 TypA_BipA GTP-bindin 100.0 1E-28 2.2E-33 293.8 33.1 416 492-983 2-472 (594)
13 PRK10512 selenocysteinyl-tRNA- 100.0 6.3E-29 1.4E-33 296.7 26.6 245 492-746 1-257 (614)
14 TIGR01393 lepA GTP-binding pro 100.0 1.6E-27 3.5E-32 283.9 34.8 452 490-1013 2-517 (595)
15 PRK12317 elongation factor 1-a 100.0 1.4E-28 3E-33 282.2 22.2 231 490-732 5-290 (425)
16 PRK12736 elongation factor Tu; 100.0 4.6E-28 9.9E-33 276.0 26.0 234 488-732 9-277 (394)
17 PRK05433 GTP-binding protein L 100.0 3.7E-27 7.9E-32 281.1 33.7 451 490-1013 6-520 (600)
18 PTZ00327 eukaryotic translatio 100.0 2.5E-28 5.4E-33 282.7 22.2 238 491-733 34-329 (460)
19 PTZ00141 elongation factor 1- 100.0 3.3E-28 7.2E-33 281.3 23.0 231 490-732 6-298 (446)
20 PLN00043 elongation factor 1-a 100.0 8.8E-28 1.9E-32 277.8 25.1 232 489-732 5-298 (447)
21 PRK12735 elongation factor Tu; 100.0 9.7E-28 2.1E-32 273.5 24.1 232 490-732 11-279 (396)
22 COG5256 TEF1 Translation elong 100.0 5.5E-28 1.2E-32 270.4 21.5 231 490-732 6-296 (428)
23 CHL00071 tufA elongation facto 100.0 2.2E-27 4.8E-32 271.6 25.9 234 488-732 9-287 (409)
24 PLN03127 Elongation factor Tu; 100.0 1.8E-27 3.9E-32 275.2 25.0 233 489-732 59-330 (447)
25 TIGR00485 EF-Tu translation el 100.0 2.2E-27 4.7E-32 270.3 25.2 235 489-732 10-277 (394)
26 TIGR00483 EF-1_alpha translati 100.0 1.1E-27 2.5E-32 274.9 23.0 232 489-732 5-292 (426)
27 PLN03126 Elongation factor Tu; 100.0 3.8E-27 8.2E-32 274.3 24.8 234 488-732 78-356 (478)
28 COG1217 TypA Predicted membran 100.0 3.4E-27 7.5E-32 264.9 23.1 241 490-738 4-282 (603)
29 PRK00049 elongation factor Tu; 100.0 5.8E-27 1.3E-31 267.2 25.0 233 489-732 10-279 (396)
30 TIGR03680 eif2g_arch translati 99.9 9.2E-27 2E-31 266.3 24.2 238 490-732 3-290 (406)
31 KOG0462 Elongation factor-type 99.9 7.2E-27 1.6E-31 266.5 19.5 249 489-746 58-329 (650)
32 COG3276 SelB Selenocysteine-sp 99.9 2.3E-26 5.1E-31 259.0 22.2 229 493-732 2-236 (447)
33 TIGR02034 CysN sulfate adenyly 99.9 2.8E-26 6E-31 262.4 22.4 228 492-733 1-283 (406)
34 PRK04000 translation initiatio 99.9 1.1E-25 2.3E-30 258.1 24.6 239 490-733 8-296 (411)
35 COG0481 LepA Membrane GTPase L 99.9 1.6E-25 3.5E-30 252.2 23.0 251 489-747 7-281 (603)
36 TIGR00484 EF-G translation elo 99.9 1.4E-24 3E-29 263.2 31.8 304 489-834 8-440 (689)
37 PRK05124 cysN sulfate adenylyl 99.9 2E-25 4.4E-30 260.0 23.0 240 489-734 25-312 (474)
38 PRK12739 elongation factor G; 99.9 1.9E-24 4.2E-29 262.0 31.3 304 489-834 6-439 (691)
39 PRK00007 elongation factor G; 99.9 3E-24 6.5E-29 260.4 32.0 304 489-834 8-442 (693)
40 PRK00741 prfC peptide chain re 99.9 1.5E-24 3.4E-29 255.2 27.9 304 489-836 8-428 (526)
41 PRK13351 elongation factor G; 99.9 4.5E-24 9.8E-29 258.6 30.7 303 490-834 7-438 (687)
42 PRK05506 bifunctional sulfate 99.9 1.3E-24 2.9E-29 261.0 22.2 242 490-746 23-321 (632)
43 TIGR00503 prfC peptide chain r 99.9 1.3E-23 2.8E-28 247.5 29.7 303 489-835 9-428 (527)
44 PRK07560 elongation factor EF- 99.9 7.4E-24 1.6E-28 258.3 27.8 309 489-834 18-424 (731)
45 PRK12740 elongation factor G; 99.9 1.9E-23 4.1E-28 252.4 29.7 296 497-834 1-421 (668)
46 PF11987 IF-2: Translation-ini 99.9 7E-26 1.5E-30 215.8 6.0 96 797-892 13-108 (108)
47 COG0050 TufB GTPases - transla 99.9 3.2E-24 6.9E-29 230.6 17.2 233 490-733 11-278 (394)
48 COG0480 FusA Translation elong 99.9 3.6E-23 7.8E-28 248.8 26.6 306 488-834 7-440 (697)
49 COG2895 CysN GTPases - Sulfate 99.9 4.7E-24 1E-28 234.1 17.2 250 489-746 4-303 (431)
50 PF00009 GTP_EFTU: Elongation 99.9 1.7E-24 3.6E-29 221.6 11.9 164 490-655 2-185 (188)
51 KOG0460 Mitochondrial translat 99.9 5.3E-24 1.1E-28 232.4 15.8 233 490-733 53-322 (449)
52 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 4.4E-23 9.5E-28 203.1 19.6 164 492-656 1-165 (168)
53 TIGR00490 aEF-2 translation el 99.9 1.1E-22 2.5E-27 247.6 25.1 310 489-834 17-424 (720)
54 COG5257 GCD11 Translation init 99.9 2.7E-22 5.8E-27 218.1 18.8 237 491-732 10-296 (415)
55 KOG0461 Selenocysteine-specifi 99.9 2.4E-22 5.2E-27 219.3 18.5 237 492-732 8-267 (522)
56 KOG0458 Elongation factor 1 al 99.9 7.2E-22 1.6E-26 227.9 19.4 234 490-732 176-470 (603)
57 COG5258 GTPBP1 GTPase [General 99.9 1.7E-21 3.6E-26 215.4 17.9 241 490-733 116-418 (527)
58 cd04171 SelB SelB subfamily. 99.9 3.2E-21 7E-26 188.3 18.0 157 492-653 1-162 (164)
59 PLN00116 translation elongatio 99.9 2.3E-20 5.1E-25 230.7 29.4 314 488-838 16-526 (843)
60 cd01890 LepA LepA subfamily. 99.9 6.6E-21 1.4E-25 190.5 19.2 157 492-654 1-174 (179)
61 cd01889 SelB_euk SelB subfamil 99.9 9.8E-21 2.1E-25 194.0 16.0 165 492-656 1-185 (192)
62 cd01884 EF_Tu EF-Tu subfamily. 99.8 2.1E-20 4.5E-25 194.7 17.1 146 492-645 3-171 (195)
63 COG4108 PrfC Peptide chain rel 99.8 4.5E-20 9.7E-25 207.3 18.4 258 489-747 10-380 (528)
64 PTZ00416 elongation factor 2; 99.8 3.5E-19 7.7E-24 220.1 28.1 119 489-607 17-157 (836)
65 cd04124 RabL2 RabL2 subfamily. 99.8 1.1E-19 2.3E-24 180.6 18.5 154 492-656 1-157 (161)
66 cd01891 TypA_BipA TypA (tyrosi 99.8 3.2E-20 7E-25 190.5 14.8 162 491-658 2-183 (194)
67 cd04145 M_R_Ras_like M-Ras/R-R 99.8 2E-19 4.3E-24 176.5 17.5 152 492-655 3-162 (164)
68 cd04119 RJL RJL (RabJ-Like) su 99.8 2.5E-19 5.4E-24 175.4 18.0 152 492-654 1-164 (168)
69 cd04138 H_N_K_Ras_like H-Ras/N 99.8 2E-19 4.3E-24 175.0 16.9 151 492-654 2-159 (162)
70 cd04136 Rap_like Rap-like subf 99.8 2.2E-19 4.9E-24 175.9 16.5 152 492-654 2-160 (163)
71 smart00173 RAS Ras subfamily o 99.8 2.8E-19 6.1E-24 176.1 17.1 152 492-655 1-160 (164)
72 cd01864 Rab19 Rab19 subfamily. 99.8 4.1E-19 8.8E-24 176.0 18.1 154 491-654 3-163 (165)
73 cd04106 Rab23_lke Rab23-like s 99.8 5E-19 1.1E-23 173.6 18.5 151 492-653 1-159 (162)
74 cd03692 mtIF2_IVc mtIF2_IVc: t 99.8 7.4E-20 1.6E-24 166.8 11.5 83 908-990 1-84 (84)
75 cd01888 eIF2_gamma eIF2-gamma 99.8 2.5E-19 5.5E-24 186.3 16.9 161 492-654 1-196 (203)
76 cd04107 Rab32_Rab38 Rab38/Rab3 99.8 7.1E-19 1.5E-23 181.5 19.9 155 492-656 1-167 (201)
77 cd04154 Arl2 Arl2 subfamily. 99.8 3.3E-19 7.1E-24 178.9 16.8 155 488-653 11-171 (173)
78 cd04175 Rap1 Rap1 subgroup. T 99.8 4.5E-19 9.7E-24 175.3 17.1 151 492-654 2-160 (164)
79 cd01867 Rab8_Rab10_Rab13_like 99.8 6.7E-19 1.4E-23 175.4 18.2 154 491-655 3-163 (167)
80 cd04120 Rab12 Rab12 subfamily. 99.8 5.4E-19 1.2E-23 184.9 18.0 154 493-655 2-161 (202)
81 cd04113 Rab4 Rab4 subfamily. 99.8 6.7E-19 1.4E-23 173.2 17.6 152 492-654 1-159 (161)
82 cd01865 Rab3 Rab3 subfamily. 99.8 7.5E-19 1.6E-23 174.7 18.1 153 492-655 2-161 (165)
83 cd04160 Arfrp1 Arfrp1 subfamil 99.8 3.9E-19 8.4E-24 175.5 15.7 155 493-653 1-165 (167)
84 cd04122 Rab14 Rab14 subfamily. 99.8 7.7E-19 1.7E-23 174.5 17.9 152 492-654 3-161 (166)
85 cd00881 GTP_translation_factor 99.8 1.1E-18 2.3E-23 174.5 18.7 159 493-655 1-185 (189)
86 PTZ00369 Ras-like protein; Pro 99.8 6.2E-19 1.3E-23 180.3 17.4 155 490-656 4-166 (189)
87 cd01883 EF1_alpha Eukaryotic e 99.8 1.4E-19 3E-24 190.6 12.9 147 493-647 1-195 (219)
88 cd04166 CysN_ATPS CysN_ATPS su 99.8 1.8E-19 3.8E-24 188.2 13.3 146 493-648 1-185 (208)
89 cd00877 Ran Ran (Ras-related n 99.8 8.7E-19 1.9E-23 175.7 17.6 154 492-655 1-157 (166)
90 cd01861 Rab6 Rab6 subfamily. 99.8 1.4E-18 3.1E-23 170.2 18.6 152 493-654 2-159 (161)
91 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.8 1.2E-18 2.6E-23 172.5 18.1 153 492-655 3-162 (166)
92 cd01862 Rab7 Rab7 subfamily. 99.8 1.8E-18 3.8E-23 171.0 19.3 155 492-656 1-166 (172)
93 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.8 9.5E-19 2.1E-23 176.8 17.7 152 491-654 2-161 (172)
94 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 1.3E-18 2.8E-23 177.3 18.3 161 490-656 2-169 (183)
95 KOG0465 Mitochondrial elongati 99.8 8.5E-19 1.8E-23 202.7 18.9 301 490-833 38-469 (721)
96 cd01866 Rab2 Rab2 subfamily. 99.8 2E-18 4.3E-23 172.4 19.0 153 492-655 5-164 (168)
97 cd04140 ARHI_like ARHI subfami 99.8 1.6E-18 3.4E-23 172.4 18.2 151 492-654 2-162 (165)
98 cd04116 Rab9 Rab9 subfamily. 99.8 1.5E-18 3.2E-23 172.5 18.0 154 491-654 5-168 (170)
99 cd01894 EngA1 EngA1 subfamily. 99.8 1.2E-18 2.7E-23 168.6 17.0 146 495-654 1-155 (157)
100 cd04165 GTPBP1_like GTPBP1-lik 99.8 5.9E-19 1.3E-23 187.5 16.0 162 493-654 1-220 (224)
101 cd04157 Arl6 Arl6 subfamily. 99.8 6.1E-19 1.3E-23 172.7 14.8 152 493-653 1-160 (162)
102 cd01875 RhoG RhoG subfamily. 99.8 1.6E-18 3.5E-23 178.2 18.5 162 490-656 2-176 (191)
103 KOG0084 GTPase Rab1/YPT1, smal 99.8 6.4E-19 1.4E-23 181.6 15.4 157 489-656 7-171 (205)
104 cd01874 Cdc42 Cdc42 subfamily. 99.8 1.4E-18 3.1E-23 176.3 17.6 159 492-655 2-173 (175)
105 cd01897 NOG NOG1 is a nucleola 99.8 2E-18 4.2E-23 170.7 18.1 151 492-654 1-165 (168)
106 cd04133 Rop_like Rop subfamily 99.8 1.3E-18 2.9E-23 178.0 17.4 153 492-655 2-171 (176)
107 smart00175 RAB Rab subfamily o 99.8 3E-18 6.5E-23 167.8 19.0 153 492-655 1-160 (164)
108 smart00174 RHO Rho (Ras homolo 99.8 1.4E-18 3E-23 173.0 16.7 151 494-655 1-170 (174)
109 cd04151 Arl1 Arl1 subfamily. 99.8 1E-18 2.2E-23 172.3 15.4 150 493-653 1-156 (158)
110 cd04176 Rap2 Rap2 subgroup. T 99.8 1.3E-18 2.7E-23 171.6 16.0 152 492-654 2-160 (163)
111 cd04149 Arf6 Arf6 subfamily. 99.8 1.3E-18 2.8E-23 175.2 16.3 153 490-653 8-166 (168)
112 cd04127 Rab27A Rab27a subfamil 99.8 2.7E-18 5.9E-23 172.1 18.5 153 491-654 4-174 (180)
113 cd04112 Rab26 Rab26 subfamily. 99.8 2.5E-18 5.5E-23 176.0 18.6 156 492-657 1-163 (191)
114 cd04144 Ras2 Ras2 subfamily. 99.8 2.8E-18 6E-23 175.7 18.6 152 493-656 1-162 (190)
115 cd01868 Rab11_like Rab11-like. 99.8 2.6E-18 5.6E-23 169.7 17.7 152 492-654 4-162 (165)
116 cd04150 Arf1_5_like Arf1-Arf5- 99.8 2.1E-18 4.4E-23 171.8 17.0 151 492-653 1-157 (159)
117 cd04132 Rho4_like Rho4-like su 99.8 3.6E-18 7.8E-23 172.9 19.0 156 492-658 1-168 (187)
118 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.8 2.5E-18 5.5E-23 176.7 18.0 155 490-655 4-178 (182)
119 cd04121 Rab40 Rab40 subfamily. 99.8 3E-18 6.5E-23 177.4 18.4 156 490-656 5-166 (189)
120 cd00879 Sar1 Sar1 subfamily. 99.8 1.7E-18 3.8E-23 175.6 16.4 160 488-654 16-188 (190)
121 cd04134 Rho3 Rho3 subfamily. 99.8 1.9E-18 4E-23 177.0 16.7 162 492-656 1-173 (189)
122 cd04156 ARLTS1 ARLTS1 subfamil 99.8 1.4E-18 3E-23 170.4 15.0 153 493-654 1-159 (160)
123 cd01860 Rab5_related Rab5-rela 99.8 3.5E-18 7.5E-23 167.8 17.6 153 492-655 2-161 (163)
124 cd01871 Rac1_like Rac1-like su 99.8 3.1E-18 6.8E-23 173.6 17.7 157 492-654 2-172 (174)
125 cd04101 RabL4 RabL4 (Rab-like4 99.8 5.5E-18 1.2E-22 166.9 18.9 154 492-655 1-162 (164)
126 cd04135 Tc10 TC10 subfamily. 99.8 2.4E-18 5.2E-23 171.3 16.4 152 492-654 1-171 (174)
127 cd04108 Rab36_Rab34 Rab34/Rab3 99.8 2.9E-18 6.2E-23 173.0 17.0 154 493-656 2-164 (170)
128 COG0486 ThdF Predicted GTPase 99.8 6.8E-19 1.5E-23 200.9 13.8 223 411-656 143-375 (454)
129 cd04131 Rnd Rnd subfamily. Th 99.8 3.9E-18 8.4E-23 174.3 17.7 153 492-655 2-174 (178)
130 cd04139 RalA_RalB RalA/RalB su 99.8 4E-18 8.7E-23 166.5 17.1 152 492-655 1-160 (164)
131 cd03702 IF2_mtIF2_II This fami 99.8 8.6E-19 1.9E-23 163.8 11.7 94 669-762 1-94 (95)
132 KOG0394 Ras-related GTPase [Ge 99.8 8.5E-19 1.8E-23 178.9 12.4 159 489-657 7-178 (210)
133 PLN03071 GTP-binding nuclear p 99.8 3.6E-18 7.8E-23 180.0 17.5 156 489-655 11-170 (219)
134 cd04114 Rab30 Rab30 subfamily. 99.8 5.6E-18 1.2E-22 167.6 17.7 155 490-654 6-166 (169)
135 smart00177 ARF ARF-like small 99.8 4.7E-18 1E-22 172.0 17.5 156 489-655 11-172 (175)
136 cd00878 Arf_Arl Arf (ADP-ribos 99.8 2.8E-18 6E-23 168.3 15.1 150 493-653 1-156 (158)
137 cd04110 Rab35 Rab35 subfamily. 99.8 6.7E-18 1.4E-22 174.5 18.7 155 491-656 6-166 (199)
138 cd04117 Rab15 Rab15 subfamily. 99.8 6.3E-18 1.4E-22 168.2 17.6 153 492-654 1-159 (161)
139 cd01863 Rab18 Rab18 subfamily. 99.8 6.1E-18 1.3E-22 166.1 17.2 152 492-654 1-159 (161)
140 cd01895 EngA2 EngA2 subfamily. 99.8 1.2E-17 2.6E-22 163.3 19.1 157 490-654 1-172 (174)
141 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.8 5E-18 1.1E-22 174.7 17.0 156 489-655 20-183 (221)
142 KOG0092 GTPase Rab5/YPT51 and 99.8 1.8E-18 4E-23 177.7 13.8 158 489-657 3-167 (200)
143 PRK04213 GTP-binding protein; 99.8 7.8E-18 1.7E-22 172.8 18.4 154 490-655 8-190 (201)
144 cd04158 ARD1 ARD1 subfamily. 99.8 4.4E-18 9.6E-23 170.6 16.2 153 493-655 1-159 (169)
145 cd01879 FeoB Ferrous iron tran 99.8 3.7E-18 8E-23 166.1 15.2 146 496-655 1-155 (158)
146 cd04118 Rab24 Rab24 subfamily. 99.8 1E-17 2.2E-22 170.7 19.1 155 492-656 1-165 (193)
147 KOG0078 GTP-binding protein SE 99.8 3.5E-18 7.5E-23 178.0 15.7 156 488-654 9-171 (207)
148 COG1160 Predicted GTPases [Gen 99.8 3.6E-18 7.7E-23 194.6 17.2 161 489-657 176-351 (444)
149 PLN00223 ADP-ribosylation fact 99.8 5.9E-18 1.3E-22 173.0 17.1 155 489-654 15-175 (181)
150 COG1160 Predicted GTPases [Gen 99.8 3.6E-18 7.8E-23 194.6 17.1 151 492-656 4-164 (444)
151 PRK03003 GTP-binding protein D 99.8 7.1E-18 1.5E-22 196.8 19.9 161 489-657 209-382 (472)
152 cd04123 Rab21 Rab21 subfamily. 99.8 1E-17 2.2E-22 163.1 17.6 152 492-654 1-159 (162)
153 TIGR03594 GTPase_EngA ribosome 99.8 7.1E-18 1.5E-22 193.1 19.3 161 489-657 170-344 (429)
154 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.8 9E-18 2E-22 179.6 18.7 154 491-656 13-187 (232)
155 cd01885 EF2 EF2 (for archaea a 99.8 3E-18 6.5E-23 182.2 15.0 116 492-607 1-138 (222)
156 cd04168 TetM_like Tet(M)-like 99.8 3.8E-18 8.3E-23 182.7 15.9 159 493-655 1-233 (237)
157 PRK05291 trmE tRNA modificatio 99.8 1E-18 2.2E-23 202.8 12.4 218 411-655 141-368 (449)
158 cd04130 Wrch_1 Wrch-1 subfamil 99.8 7.3E-18 1.6E-22 169.1 16.9 152 492-654 1-171 (173)
159 cd00154 Rab Rab family. Rab G 99.8 1.4E-17 3.1E-22 159.8 18.0 151 492-653 1-158 (159)
160 cd04109 Rab28 Rab28 subfamily. 99.8 1.2E-17 2.7E-22 174.7 19.1 153 492-655 1-164 (215)
161 cd04125 RabA_like RabA-like su 99.8 1.2E-17 2.7E-22 169.9 18.5 154 492-656 1-161 (188)
162 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 6.2E-18 1.3E-22 170.5 16.1 153 490-653 14-172 (174)
163 smart00176 RAN Ran (Ras-relate 99.8 7.3E-18 1.6E-22 176.2 17.0 149 497-656 1-153 (200)
164 cd04128 Spg1 Spg1p. Spg1p (se 99.8 2.8E-18 6.2E-23 175.7 13.7 156 492-655 1-164 (182)
165 cd04115 Rab33B_Rab33A Rab33B/R 99.8 1.6E-17 3.5E-22 166.2 18.7 154 491-654 2-166 (170)
166 PRK15494 era GTPase Era; Provi 99.8 7.5E-18 1.6E-22 189.2 18.2 158 489-657 50-216 (339)
167 cd04177 RSR1 RSR1 subgroup. R 99.8 9.3E-18 2E-22 167.3 16.9 153 492-655 2-162 (168)
168 PLN03118 Rab family protein; P 99.8 1.7E-17 3.7E-22 172.7 19.5 155 490-656 13-176 (211)
169 cd01870 RhoA_like RhoA-like su 99.8 9.9E-18 2.1E-22 167.1 16.7 159 492-655 2-173 (175)
170 TIGR00436 era GTP-binding prot 99.8 8.5E-18 1.9E-22 182.4 17.1 153 493-656 2-163 (270)
171 cd04159 Arl10_like Arl10-like 99.8 1.3E-17 2.8E-22 160.4 16.5 151 494-654 2-158 (159)
172 cd04143 Rhes_like Rhes_like su 99.8 1.5E-17 3.3E-22 179.1 18.6 155 492-657 1-171 (247)
173 cd04137 RheB Rheb (Ras Homolog 99.8 1.6E-17 3.5E-22 166.8 17.5 158 492-660 2-166 (180)
174 cd04111 Rab39 Rab39 subfamily. 99.8 1.7E-17 3.6E-22 173.9 18.2 153 492-655 3-164 (211)
175 cd04161 Arl2l1_Arl13_like Arl2 99.8 1.3E-17 2.8E-22 167.4 16.6 153 493-653 1-165 (167)
176 cd00157 Rho Rho (Ras homology) 99.8 1E-17 2.2E-22 165.5 15.6 152 492-654 1-170 (171)
177 cd04147 Ras_dva Ras-dva subfam 99.8 9.6E-18 2.1E-22 173.0 15.9 157 493-657 1-163 (198)
178 cd01898 Obg Obg subfamily. Th 99.8 1.6E-17 3.4E-22 164.3 16.7 152 493-654 2-168 (170)
179 PTZ00133 ADP-ribosylation fact 99.8 2.3E-17 5E-22 168.6 17.6 155 489-654 15-175 (182)
180 PF02421 FeoB_N: Ferrous iron 99.8 1.1E-17 2.5E-22 169.2 15.1 147 492-652 1-156 (156)
181 cd01893 Miro1 Miro1 subfamily. 99.8 9.7E-18 2.1E-22 167.2 14.3 153 493-655 2-162 (166)
182 cd04142 RRP22 RRP22 subfamily. 99.8 2.1E-17 4.7E-22 171.8 17.3 156 492-656 1-173 (198)
183 PLN03110 Rab GTPase; Provision 99.8 3.2E-17 6.8E-22 172.3 18.6 156 490-655 11-172 (216)
184 cd04146 RERG_RasL11_like RERG/ 99.8 1.6E-17 3.4E-22 164.7 15.4 150 493-654 1-161 (165)
185 PRK03003 GTP-binding protein D 99.8 2.6E-17 5.5E-22 192.2 19.6 153 489-655 36-197 (472)
186 smart00178 SAR Sar1p-like memb 99.7 2.3E-17 5.1E-22 168.4 16.9 158 489-653 15-181 (184)
187 cd04155 Arl3 Arl3 subfamily. 99.7 1.7E-17 3.8E-22 165.0 15.6 154 490-654 13-172 (173)
188 PRK00093 GTP-binding protein D 99.7 2.5E-17 5.3E-22 189.4 18.9 161 489-657 171-344 (435)
189 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.7 4.3E-17 9.3E-22 173.3 19.0 159 492-655 2-174 (222)
190 KOG0098 GTPase Rab2, small G p 99.7 1.1E-17 2.4E-22 171.1 13.6 153 491-654 6-165 (216)
191 cd04126 Rab20 Rab20 subfamily. 99.7 3E-17 6.5E-22 174.2 17.4 158 492-656 1-189 (220)
192 cd00876 Ras Ras family. The R 99.7 3E-17 6.4E-22 159.5 15.7 150 493-654 1-158 (160)
193 TIGR00231 small_GTP small GTP- 99.7 6.1E-17 1.3E-21 153.8 17.1 151 492-653 2-160 (161)
194 cd01886 EF-G Elongation factor 99.7 2.3E-17 5E-22 180.1 16.0 139 493-640 1-158 (270)
195 cd04162 Arl9_Arfrp2_like Arl9/ 99.7 2.2E-17 4.8E-22 165.4 14.6 151 494-653 2-162 (164)
196 TIGR03598 GTPase_YsxC ribosome 99.7 3.1E-17 6.6E-22 166.5 15.6 148 489-646 16-179 (179)
197 cd04164 trmE TrmE (MnmE, ThdF, 99.7 6.8E-17 1.5E-21 156.1 17.3 144 492-654 2-154 (157)
198 cd01892 Miro2 Miro2 subfamily. 99.7 5E-17 1.1E-21 163.7 16.8 157 489-655 2-164 (169)
199 cd03701 IF2_IF5B_II IF2_IF5B_I 99.7 1.5E-17 3.2E-22 155.5 12.0 93 669-761 1-93 (95)
200 PLN03108 Rab family protein; P 99.7 8.5E-17 1.8E-21 168.2 19.1 155 491-656 6-167 (210)
201 TIGR00450 mnmE_trmE_thdF tRNA 99.7 4.5E-17 9.7E-22 188.9 18.5 217 411-655 133-358 (442)
202 PF00071 Ras: Ras family; Int 99.7 7.9E-17 1.7E-21 158.4 17.5 152 493-655 1-159 (162)
203 COG1159 Era GTPase [General fu 99.7 2.3E-17 5.1E-22 179.8 15.1 156 489-655 4-170 (298)
204 PRK00093 GTP-binding protein D 99.7 6E-17 1.3E-21 186.2 19.0 149 492-654 2-159 (435)
205 cd01878 HflX HflX subfamily. 99.7 4.3E-17 9.3E-22 168.0 15.9 150 490-654 40-202 (204)
206 cd04167 Snu114p Snu114p subfam 99.7 2.4E-17 5.2E-22 172.5 14.1 116 492-607 1-136 (213)
207 TIGR03594 GTPase_EngA ribosome 99.7 5.2E-17 1.1E-21 186.1 17.7 149 493-655 1-158 (429)
208 TIGR02528 EutP ethanolamine ut 99.7 4.3E-17 9.3E-22 157.8 13.7 133 493-653 2-141 (142)
209 cd01873 RhoBTB RhoBTB subfamil 99.7 1E-16 2.2E-21 166.7 17.1 152 492-654 3-193 (195)
210 PRK09518 bifunctional cytidyla 99.7 1.4E-16 3E-21 194.5 19.7 160 490-657 449-621 (712)
211 cd04148 RGK RGK subfamily. Th 99.7 2.6E-16 5.7E-21 166.2 18.4 154 492-657 1-163 (221)
212 TIGR03156 GTP_HflX GTP-binding 99.7 1.6E-16 3.4E-21 179.5 17.4 149 490-654 188-349 (351)
213 PRK00454 engB GTP-binding prot 99.7 2.9E-16 6.2E-21 159.6 17.1 156 488-655 21-192 (196)
214 PRK00089 era GTPase Era; Revie 99.7 2.3E-16 5E-21 172.4 17.1 158 490-656 4-170 (292)
215 PRK15467 ethanolamine utilizat 99.7 1.5E-16 3.3E-21 159.6 14.4 140 493-656 3-146 (158)
216 KOG0080 GTPase Rab18, small G 99.7 2.1E-17 4.6E-22 165.4 7.9 153 490-653 10-170 (209)
217 cd04169 RF3 RF3 subfamily. Pe 99.7 1.8E-16 3.8E-21 172.8 15.7 126 491-620 2-149 (267)
218 KOG0459 Polypeptide release fa 99.7 6.5E-17 1.4E-21 180.4 12.3 239 488-736 76-376 (501)
219 KOG0464 Elongation factor G [T 99.7 2.6E-17 5.6E-22 182.9 8.9 320 490-834 36-491 (753)
220 cd00880 Era_like Era (E. coli 99.7 3.6E-16 7.7E-21 148.4 15.4 153 496-655 1-162 (163)
221 PRK09518 bifunctional cytidyla 99.7 9.3E-16 2E-20 187.3 22.8 152 490-655 274-434 (712)
222 cd04129 Rho2 Rho2 subfamily. 99.7 4.6E-16 9.9E-21 159.0 16.7 154 492-656 2-172 (187)
223 cd04163 Era Era subfamily. Er 99.7 9.2E-16 2E-20 148.2 17.9 156 490-654 2-166 (168)
224 cd01881 Obg_like The Obg-like 99.7 2.4E-16 5.2E-21 156.1 13.2 150 496-654 1-174 (176)
225 cd04103 Centaurin_gamma Centau 99.7 8.4E-16 1.8E-20 153.9 17.1 146 493-654 2-156 (158)
226 PF00025 Arf: ADP-ribosylation 99.7 2.3E-16 5.1E-21 160.6 12.8 156 489-654 12-173 (175)
227 KOG0095 GTPase Rab30, small G 99.7 2.8E-16 6E-21 155.7 12.8 153 491-653 7-165 (213)
228 KOG0463 GTP-binding protein GP 99.7 2.3E-16 5E-21 174.1 13.0 223 492-716 134-421 (641)
229 cd00882 Ras_like_GTPase Ras-li 99.7 7.8E-16 1.7E-20 143.6 14.4 148 496-653 1-156 (157)
230 PTZ00132 GTP-binding nuclear p 99.7 2.3E-15 5.1E-20 157.0 18.9 155 490-655 8-166 (215)
231 PRK12299 obgE GTPase CgtA; Rev 99.7 2.1E-15 4.4E-20 169.5 19.7 158 490-656 157-327 (335)
232 KOG0093 GTPase Rab3, small G p 99.6 9.9E-16 2.2E-20 151.7 12.5 155 491-656 21-182 (193)
233 PRK11058 GTPase HflX; Provisio 99.6 2.7E-15 6E-20 173.4 17.7 150 491-655 197-360 (426)
234 KOG0087 GTPase Rab11/YPT3, sma 99.6 8.6E-16 1.9E-20 160.1 11.9 155 490-654 13-173 (222)
235 TIGR02729 Obg_CgtA Obg family 99.6 3.5E-15 7.6E-20 167.3 17.7 155 490-655 156-327 (329)
236 KOG0086 GTPase Rab4, small G p 99.6 1.1E-15 2.4E-20 152.0 11.5 156 490-653 8-167 (214)
237 KOG0079 GTP-binding protein H- 99.6 2.2E-15 4.9E-20 149.3 13.6 155 492-657 9-169 (198)
238 cd04170 EF-G_bact Elongation f 99.6 9.7E-16 2.1E-20 166.0 11.7 148 493-650 1-166 (268)
239 PRK12298 obgE GTPase CgtA; Rev 99.6 7.3E-15 1.6E-19 168.2 18.0 159 491-657 159-333 (390)
240 COG0218 Predicted GTPase [Gene 99.6 1.4E-14 3E-19 151.1 18.3 156 490-655 23-195 (200)
241 cd01876 YihA_EngB The YihA (En 99.6 9.1E-15 2E-19 141.9 16.0 151 494-654 2-168 (170)
242 PRK12297 obgE GTPase CgtA; Rev 99.6 1.2E-14 2.6E-19 167.8 19.5 153 491-656 158-326 (424)
243 PF10662 PduV-EutP: Ethanolami 99.6 2.8E-15 6.2E-20 149.6 12.5 134 493-653 3-142 (143)
244 PRK12296 obgE GTPase CgtA; Rev 99.6 8.4E-15 1.8E-19 171.5 18.3 156 490-658 158-341 (500)
245 PRK09554 feoB ferrous iron tra 99.6 5.9E-15 1.3E-19 181.0 17.8 151 491-655 3-166 (772)
246 COG2229 Predicted GTPase [Gene 99.6 1.5E-14 3.2E-19 148.4 17.4 160 487-655 6-176 (187)
247 cd04105 SR_beta Signal recogni 99.6 1.1E-14 2.3E-19 152.3 16.1 159 492-653 1-201 (203)
248 TIGR00437 feoB ferrous iron tr 99.6 7.6E-15 1.6E-19 175.9 15.4 145 498-656 1-154 (591)
249 KOG0466 Translation initiation 99.6 7.1E-16 1.5E-20 167.1 5.8 235 491-730 38-334 (466)
250 KOG1143 Predicted translation 99.6 1.3E-14 2.7E-19 160.6 13.9 240 492-732 168-471 (591)
251 cd04102 RabL3 RabL3 (Rab-like3 99.6 2.7E-14 5.9E-19 149.9 15.2 148 492-643 1-176 (202)
252 KOG0395 Ras-related GTPase [Ge 99.6 1.9E-14 4.2E-19 150.6 13.0 158 490-658 2-166 (196)
253 KOG0088 GTPase Rab21, small G 99.5 1E-14 2.3E-19 145.9 8.2 154 490-654 12-172 (218)
254 KOG0091 GTPase Rab39, small G 99.5 2.1E-14 4.6E-19 144.4 10.4 153 490-654 7-170 (213)
255 COG1100 GTPase SAR1 and relate 99.5 1.6E-13 3.5E-18 142.1 16.1 163 492-656 6-184 (219)
256 cd01896 DRG The developmentall 99.5 2E-13 4.3E-18 146.1 16.1 145 493-655 2-224 (233)
257 KOG0075 GTP-binding ADP-ribosy 99.5 7.1E-14 1.5E-18 138.7 10.8 157 492-657 21-182 (186)
258 KOG0073 GTP-binding ADP-ribosy 99.5 3.2E-13 6.9E-18 136.3 14.6 157 488-654 13-175 (185)
259 KOG0097 GTPase Rab14, small G 99.5 2.6E-13 5.6E-18 133.7 13.3 152 490-652 10-168 (215)
260 KOG1191 Mitochondrial GTPase [ 99.5 1.8E-13 3.9E-18 156.7 13.3 164 485-658 262-451 (531)
261 KOG0083 GTPase Rab26/Rab37, sm 99.5 3.9E-14 8.4E-19 138.5 6.6 180 496-687 2-188 (192)
262 PTZ00099 rab6; Provisional 99.5 3.4E-13 7.4E-18 138.3 13.9 125 523-656 10-141 (176)
263 KOG0070 GTP-binding ADP-ribosy 99.5 1.3E-13 2.8E-18 141.6 9.7 157 488-655 14-176 (181)
264 cd03703 aeIF5B_II aeIF5B_II: T 99.5 2.6E-13 5.7E-18 129.8 11.1 90 670-760 2-107 (110)
265 PLN00023 GTP-binding protein; 99.5 7.3E-13 1.6E-17 148.0 15.7 135 488-624 18-190 (334)
266 KOG1423 Ras-like GTPase ERA [C 99.5 4.9E-13 1.1E-17 146.0 13.7 168 488-661 69-275 (379)
267 COG0370 FeoB Fe2+ transport sy 99.5 9.6E-13 2.1E-17 156.3 16.9 148 492-657 4-164 (653)
268 KOG0081 GTPase Rab27, small G 99.4 8.2E-14 1.8E-18 139.6 5.7 153 492-655 10-179 (219)
269 COG1084 Predicted GTPase [Gene 99.4 1.4E-12 3.1E-17 144.0 15.4 161 484-656 161-335 (346)
270 cd04104 p47_IIGP_like p47 (47- 99.4 2.8E-12 6.1E-17 133.1 14.4 158 491-655 1-182 (197)
271 PF01926 MMR_HSR1: 50S ribosom 99.4 3.2E-12 6.9E-17 120.9 12.7 106 493-603 1-116 (116)
272 KOG0393 Ras-related small GTPa 99.4 5.9E-13 1.3E-17 139.2 8.3 161 490-656 3-178 (198)
273 PF08477 Miro: Miro-like prote 99.4 9.8E-13 2.1E-17 123.7 8.8 109 493-605 1-119 (119)
274 PRK09866 hypothetical protein; 99.3 2.3E-11 5.1E-16 144.3 19.0 111 542-654 230-350 (741)
275 KOG0467 Translation elongation 99.3 6.8E-12 1.5E-16 148.9 13.6 118 489-606 7-136 (887)
276 KOG0468 U5 snRNP-specific prot 99.3 4.5E-12 9.8E-17 148.1 11.7 121 486-606 123-261 (971)
277 cd01882 BMS1 Bms1. Bms1 is an 99.3 3.7E-11 8.1E-16 127.9 16.5 144 488-645 36-184 (225)
278 KOG0076 GTP-binding ADP-ribosy 99.3 6.6E-12 1.4E-16 127.9 9.6 161 490-657 16-187 (197)
279 KOG1489 Predicted GTP-binding 99.3 2.5E-11 5.3E-16 133.6 14.5 153 490-653 195-363 (366)
280 cd01852 AIG1 AIG1 (avrRpt2-ind 99.3 3.7E-11 7.9E-16 124.3 14.7 152 492-657 1-184 (196)
281 KOG0071 GTP-binding ADP-ribosy 99.3 2.1E-11 4.6E-16 120.6 11.8 155 490-655 16-176 (180)
282 COG2262 HflX GTPases [General 99.3 3.2E-11 7E-16 136.7 14.6 153 489-656 190-355 (411)
283 cd01850 CDC_Septin CDC/Septin. 99.2 1.3E-10 2.8E-15 127.7 15.2 116 492-608 5-157 (276)
284 cd01899 Ygr210 Ygr210 subfamil 99.2 2.3E-10 5.1E-15 128.2 17.2 84 494-577 1-111 (318)
285 COG1163 DRG Predicted GTPase [ 99.2 9.5E-11 2.1E-15 129.5 13.3 150 492-658 64-290 (365)
286 KOG1532 GTPase XAB1, interacts 99.2 3.1E-11 6.7E-16 130.4 6.9 172 485-656 13-263 (366)
287 PF09439 SRPRB: Signal recogni 99.2 1.2E-10 2.6E-15 120.9 10.9 115 490-611 2-129 (181)
288 KOG4252 GTP-binding protein [S 99.1 6.4E-11 1.4E-15 121.1 6.6 155 489-654 18-178 (246)
289 KOG0074 GTP-binding ADP-ribosy 99.1 1.4E-10 2.9E-15 115.1 8.2 155 489-653 15-175 (185)
290 COG4917 EutP Ethanolamine util 99.1 1.6E-10 3.5E-15 112.7 8.5 136 493-654 3-143 (148)
291 COG0536 Obg Predicted GTPase [ 99.1 7.1E-10 1.5E-14 123.5 14.7 157 493-659 161-335 (369)
292 PF14578 GTP_EFTU_D4: Elongati 99.1 3.7E-10 8.1E-15 102.9 9.6 75 908-990 5-81 (81)
293 COG3596 Predicted GTPase [Gene 99.1 4.6E-10 9.9E-15 122.1 11.0 165 488-655 36-220 (296)
294 PRK09602 translation-associate 99.1 2.4E-09 5.3E-14 123.3 17.5 85 492-576 2-113 (396)
295 PRK13768 GTPase; Provisional 99.0 1.4E-09 3E-14 118.1 11.9 113 543-655 98-245 (253)
296 KOG0090 Signal recognition par 99.0 1.4E-09 3.1E-14 114.4 11.5 157 490-654 37-236 (238)
297 KOG0072 GTP-binding ADP-ribosy 99.0 6.2E-10 1.4E-14 110.7 7.1 155 490-655 17-177 (182)
298 KOG0077 Vesicle coat complex C 99.0 1.5E-09 3.2E-14 110.4 9.8 159 487-652 16-188 (193)
299 KOG0469 Elongation factor 2 [T 99.0 1.1E-09 2.3E-14 125.4 9.6 132 488-619 16-179 (842)
300 KOG0096 GTPase Ran/TC4/GSP1 (n 99.0 1.2E-09 2.5E-14 113.1 8.3 152 491-654 10-166 (216)
301 PRK09435 membrane ATPase/prote 98.9 1.5E-08 3.3E-13 114.3 13.8 111 540-657 147-260 (332)
302 KOG2486 Predicted GTPase [Gene 98.9 6.4E-09 1.4E-13 113.3 9.8 160 488-654 133-313 (320)
303 TIGR00750 lao LAO/AO transport 98.9 3E-08 6.6E-13 110.1 15.0 108 540-656 125-237 (300)
304 PF03029 ATP_bind_1: Conserved 98.9 8.1E-10 1.7E-14 119.2 2.4 114 543-656 92-236 (238)
305 KOG3883 Ras family small GTPas 98.8 3E-08 6.6E-13 99.8 12.7 156 488-653 6-171 (198)
306 PTZ00258 GTP-binding protein; 98.8 2.8E-08 6.1E-13 114.2 13.9 87 489-576 19-126 (390)
307 PF00350 Dynamin_N: Dynamin fa 98.8 2.5E-08 5.4E-13 99.5 11.4 111 494-604 1-168 (168)
308 PF04670 Gtr1_RagA: Gtr1/RagA 98.8 6.8E-08 1.5E-12 104.2 15.4 151 493-653 1-172 (232)
309 KOG1707 Predicted Ras related/ 98.8 8E-09 1.7E-13 121.0 8.6 148 488-652 6-170 (625)
310 KOG1490 GTP-binding protein CR 98.8 9.1E-09 2E-13 118.7 8.9 155 485-651 162-335 (620)
311 TIGR00073 hypB hydrogenase acc 98.8 2.1E-08 4.6E-13 105.2 10.8 151 490-654 21-204 (207)
312 smart00053 DYNc Dynamin, GTPas 98.8 1.1E-07 2.3E-12 103.1 16.2 130 490-620 25-217 (240)
313 TIGR02836 spore_IV_A stage IV 98.8 7.2E-08 1.6E-12 110.6 15.0 155 491-653 17-233 (492)
314 cd01853 Toc34_like Toc34-like 98.8 9.3E-08 2E-12 104.0 15.3 117 487-607 27-162 (249)
315 TIGR00101 ureG urease accessor 98.8 6.1E-08 1.3E-12 101.9 12.2 97 542-654 92-193 (199)
316 KOG1673 Ras GTPases [General f 98.7 1.9E-08 4.1E-13 101.4 7.4 156 491-653 20-182 (205)
317 PF05049 IIGP: Interferon-indu 98.7 3.1E-08 6.7E-13 113.1 8.9 156 485-653 29-214 (376)
318 KOG0410 Predicted GTP binding 98.7 6.7E-08 1.5E-12 107.1 9.5 146 488-653 175-337 (410)
319 PRK09601 GTP-binding protein Y 98.7 2.9E-07 6.3E-12 105.1 14.8 85 492-576 3-107 (364)
320 KOG4423 GTP-binding protein-li 98.6 5.5E-09 1.2E-13 107.9 0.3 154 492-655 26-192 (229)
321 TIGR00991 3a0901s02IAP34 GTP-b 98.6 9E-07 2E-11 99.1 15.5 115 489-607 36-166 (313)
322 PF03308 ArgK: ArgK protein; 98.6 2.3E-07 4.9E-12 101.2 10.4 158 489-657 27-230 (266)
323 COG1703 ArgK Putative periplas 98.6 5.8E-07 1.3E-11 99.4 13.3 165 488-659 48-256 (323)
324 cd01859 MJ1464 MJ1464. This f 98.6 3.8E-07 8.1E-12 90.9 10.6 94 555-656 2-95 (156)
325 COG0378 HypB Ni2+-binding GTPa 98.5 9.4E-07 2E-11 92.7 12.1 96 543-655 98-199 (202)
326 PF04548 AIG1: AIG1 family; I 98.4 2.8E-06 6E-11 89.9 14.2 111 493-608 2-130 (212)
327 PRK10463 hydrogenase nickel in 98.4 4.1E-07 8.9E-12 101.0 7.7 151 489-654 102-286 (290)
328 cd01855 YqeH YqeH. YqeH is an 98.4 2.1E-06 4.5E-11 88.6 11.1 104 550-656 19-124 (190)
329 COG5192 BMS1 GTP-binding prote 98.4 4.2E-06 9.2E-11 97.6 14.5 107 489-608 67-177 (1077)
330 PF00735 Septin: Septin; Inte 98.3 2.8E-06 6.1E-11 94.1 11.9 131 492-623 5-176 (281)
331 cd01900 YchF YchF subfamily. 98.3 1.3E-06 2.9E-11 96.5 8.3 84 494-577 1-104 (274)
332 COG0012 Predicted GTPase, prob 98.3 9.4E-06 2E-10 92.4 14.8 87 491-577 2-109 (372)
333 TIGR00157 ribosome small subun 98.3 1.8E-06 3.9E-11 93.7 8.7 94 553-653 24-119 (245)
334 TIGR00993 3a0901s04IAP86 chlor 98.3 1.4E-05 3.1E-10 96.5 16.5 113 490-607 117-249 (763)
335 KOG3886 GTP-binding protein [S 98.2 1.3E-06 2.8E-11 93.4 6.1 148 491-641 4-163 (295)
336 cd01856 YlqF YlqF. Proteins o 98.2 9.5E-06 2.1E-10 82.7 11.9 97 549-655 2-99 (171)
337 cd01342 Translation_Factor_II_ 98.2 9.9E-06 2.1E-10 69.8 10.3 79 910-989 3-82 (83)
338 cd01858 NGP_1 NGP-1. Autoanti 98.1 1.4E-05 3E-10 80.2 10.3 88 561-655 4-93 (157)
339 cd03693 EF1_alpha_II EF1_alpha 98.1 1.3E-05 2.9E-10 74.3 8.8 78 910-990 7-87 (91)
340 cd01849 YlqF_related_GTPase Yl 98.1 1.1E-05 2.3E-10 80.9 8.4 82 567-655 1-83 (155)
341 TIGR03596 GTPase_YlqF ribosome 98.1 1.5E-05 3.3E-10 87.8 10.2 97 549-656 4-102 (276)
342 KOG1954 Endocytosis/signaling 98.1 3.6E-05 7.8E-10 87.0 12.7 117 490-608 57-225 (532)
343 cd01858 NGP_1 NGP-1. Autoanti 98.0 7.4E-06 1.6E-10 82.1 6.4 55 490-551 101-156 (157)
344 cd04178 Nucleostemin_like Nucl 98.0 8.3E-06 1.8E-10 84.2 6.6 56 489-551 115-171 (172)
345 smart00010 small_GTPase Small 98.0 4.9E-06 1.1E-10 78.0 4.1 112 492-646 1-115 (124)
346 KOG1486 GTP-binding protein DR 98.0 4.1E-05 9E-10 83.0 11.5 85 489-577 60-151 (364)
347 PRK10416 signal recognition pa 98.0 0.00011 2.3E-09 83.1 15.4 147 489-649 112-302 (318)
348 COG5019 CDC3 Septin family pro 97.9 8E-05 1.7E-09 84.6 12.8 133 489-622 21-195 (373)
349 PRK09563 rbgA GTPase YlqF; Rev 97.9 3.7E-05 8E-10 85.2 9.4 99 548-657 6-106 (287)
350 cd03696 selB_II selB_II: this 97.9 4.7E-05 1E-09 69.2 8.4 77 911-990 4-83 (83)
351 PRK12289 GTPase RsgA; Reviewed 97.9 4.3E-05 9.3E-10 87.4 9.9 85 561-653 85-171 (352)
352 cd01855 YqeH YqeH. YqeH is an 97.9 2E-05 4.4E-10 81.3 6.5 55 490-551 126-189 (190)
353 cd01857 HSR1_MMR1 HSR1/MMR1. 97.9 3.9E-05 8.4E-10 75.8 8.1 77 559-644 5-84 (141)
354 TIGR00064 ftsY signal recognit 97.9 0.00026 5.6E-09 78.3 15.3 95 540-649 153-260 (272)
355 TIGR03597 GTPase_YqeH ribosome 97.9 6.5E-05 1.4E-09 86.0 10.9 95 552-654 50-150 (360)
356 KOG3905 Dynein light intermedi 97.8 0.00016 3.5E-09 80.8 12.9 156 489-654 50-287 (473)
357 cd01857 HSR1_MMR1 HSR1/MMR1. 97.8 2.8E-05 6E-10 76.9 6.1 53 493-552 85-138 (141)
358 KOG0448 Mitofusin 1 GTPase, in 97.8 0.00011 2.5E-09 88.3 12.0 153 487-641 105-310 (749)
359 cd01849 YlqF_related_GTPase Yl 97.8 3.5E-05 7.7E-10 77.2 6.7 57 488-551 97-154 (155)
360 cd01851 GBP Guanylate-binding 97.8 8.9E-05 1.9E-09 79.5 10.0 86 491-577 7-103 (224)
361 PRK09563 rbgA GTPase YlqF; Rev 97.8 3.6E-05 7.8E-10 85.3 7.0 58 488-552 118-176 (287)
362 KOG2655 Septin family protein 97.8 0.00016 3.4E-09 82.7 11.7 132 491-623 21-192 (366)
363 PRK00098 GTPase RsgA; Reviewed 97.8 6.3E-05 1.4E-09 83.9 8.5 83 563-652 78-162 (298)
364 cd01856 YlqF YlqF. Proteins o 97.8 5.1E-05 1.1E-09 77.4 7.1 58 488-552 112-170 (171)
365 cd01854 YjeQ_engC YjeQ/EngC. 97.8 8.9E-05 1.9E-09 82.3 9.4 84 562-653 75-160 (287)
366 KOG1547 Septin CDC10 and relat 97.7 0.00024 5.1E-09 76.9 11.6 131 492-623 47-218 (336)
367 KOG0052 Translation elongation 97.7 1.3E-05 2.9E-10 91.4 2.2 115 490-608 6-156 (391)
368 PF04760 IF2_N: Translation in 97.7 9.8E-06 2.1E-10 68.4 0.7 51 410-460 2-54 (54)
369 cd03690 Tet_II Tet_II: This su 97.7 0.00015 3.3E-09 66.6 8.5 78 667-745 2-83 (85)
370 cd03694 GTPBP_II Domain II of 97.7 0.00013 2.9E-09 67.2 8.0 62 670-732 2-69 (87)
371 TIGR03596 GTPase_YlqF ribosome 97.7 5.9E-05 1.3E-09 83.1 6.7 57 489-552 116-173 (276)
372 cd03698 eRF3_II_like eRF3_II_l 97.7 0.00034 7.4E-09 63.8 10.3 77 910-989 4-82 (83)
373 PRK12736 elongation factor Tu; 97.7 0.002 4.3E-08 74.7 19.1 181 808-989 81-294 (394)
374 PLN03126 Elongation factor Tu; 97.7 0.0016 3.4E-08 77.6 18.2 187 800-990 145-374 (478)
375 PRK14974 cell division protein 97.6 0.00068 1.5E-08 77.3 14.1 94 541-649 222-322 (336)
376 TIGR01425 SRP54_euk signal rec 97.6 0.00064 1.4E-08 79.7 14.2 146 490-649 99-282 (429)
377 PF05783 DLIC: Dynein light in 97.6 0.00057 1.2E-08 81.0 13.7 155 491-655 25-262 (472)
378 cd03693 EF1_alpha_II EF1_alpha 97.6 0.00028 6.1E-09 65.6 8.8 65 667-732 3-69 (91)
379 COG1161 Predicted GTPases [Gen 97.6 7.9E-05 1.7E-09 84.2 6.1 57 488-551 129-186 (322)
380 KOG1487 GTP-binding protein DR 97.6 0.00015 3.2E-09 79.1 7.7 82 492-577 60-148 (358)
381 PRK12288 GTPase RsgA; Reviewed 97.6 0.00033 7.2E-09 80.1 10.8 85 563-653 118-204 (347)
382 PRK01889 GTPase RsgA; Reviewed 97.6 0.00037 8E-09 79.9 11.1 82 563-652 110-192 (356)
383 PLN00043 elongation factor 1-a 97.6 0.0024 5.3E-08 75.4 18.1 180 807-990 90-316 (447)
384 PRK12735 elongation factor Tu; 97.6 0.0034 7.3E-08 72.9 18.8 182 808-990 81-297 (396)
385 cd04092 mtEFG2_II_like mtEFG2_ 97.5 0.00042 9.2E-09 62.9 8.9 76 670-746 2-82 (83)
386 PF03144 GTP_EFTU_D2: Elongati 97.5 0.00026 5.7E-09 62.4 7.3 68 921-988 1-73 (74)
387 cd03698 eRF3_II_like eRF3_II_l 97.5 0.00038 8.3E-09 63.5 8.5 62 669-732 2-65 (83)
388 cd03691 BipA_TypA_II BipA_TypA 97.5 0.00053 1.2E-08 62.5 9.3 75 670-745 2-84 (86)
389 PLN03127 Elongation factor Tu; 97.5 0.0045 9.7E-08 73.2 19.3 181 808-990 130-348 (447)
390 cd04088 EFG_mtEFG_II EFG_mtEFG 97.5 0.00046 9.9E-09 62.5 8.6 75 670-745 2-81 (83)
391 TIGR00485 EF-Tu translation el 97.5 0.0041 8.9E-08 72.1 18.3 179 808-989 81-294 (394)
392 TIGR03597 GTPase_YqeH ribosome 97.5 8.9E-05 1.9E-09 84.9 4.6 110 491-607 154-279 (360)
393 TIGR00092 GTP-binding protein 97.5 0.00034 7.5E-09 80.4 9.0 86 492-577 3-109 (368)
394 cd03689 RF3_II RF3_II: this su 97.5 0.00058 1.3E-08 62.9 8.7 75 671-746 1-83 (85)
395 PF03193 DUF258: Protein of un 97.4 0.00022 4.9E-09 73.4 6.3 87 452-555 6-100 (161)
396 PRK14722 flhF flagellar biosyn 97.4 0.0014 3.1E-08 75.7 13.4 148 487-647 133-322 (374)
397 smart00275 G_alpha G protein a 97.4 0.0012 2.7E-08 75.3 12.8 80 524-607 170-264 (342)
398 CHL00071 tufA elongation facto 97.4 0.0066 1.4E-07 70.8 18.9 180 808-990 81-305 (409)
399 TIGR00483 EF-1_alpha translati 97.4 0.0046 1E-07 72.2 17.5 181 806-989 89-309 (426)
400 cd04089 eRF3_II eRF3_II: domai 97.4 0.00094 2E-08 60.8 9.3 75 911-989 5-81 (82)
401 cd00066 G-alpha G protein alph 97.4 0.00073 1.6E-08 76.2 10.3 79 524-606 147-240 (317)
402 PRK12317 elongation factor 1-a 97.4 0.0063 1.4E-07 71.1 18.2 180 807-989 89-307 (425)
403 cd03696 selB_II selB_II: this 97.4 0.00075 1.6E-08 61.4 8.4 62 671-733 3-66 (83)
404 PRK12727 flagellar biosynthesi 97.4 0.0075 1.6E-07 72.5 18.9 144 488-646 347-524 (559)
405 cd01859 MJ1464 MJ1464. This f 97.4 0.00032 7E-09 70.0 6.5 56 489-551 99-155 (156)
406 cd03694 GTPBP_II Domain II of 97.4 0.00099 2.1E-08 61.5 9.2 77 911-988 4-85 (87)
407 PRK00049 elongation factor Tu; 97.4 0.0086 1.9E-07 69.6 18.9 182 808-990 81-297 (396)
408 cd03112 CobW_like The function 97.4 0.0011 2.4E-08 67.3 10.2 112 492-606 1-158 (158)
409 cd03695 CysN_NodQ_II CysN_NodQ 97.3 0.0014 3.1E-08 59.8 9.6 75 911-988 4-79 (81)
410 KOG1491 Predicted GTP-binding 97.3 0.00053 1.1E-08 77.4 8.0 87 491-577 20-126 (391)
411 PRK12289 GTPase RsgA; Reviewed 97.3 0.00037 8.1E-09 79.8 7.1 57 493-556 174-238 (352)
412 PRK10512 selenocysteinyl-tRNA- 97.3 0.0055 1.2E-07 75.1 17.1 180 807-989 56-257 (614)
413 COG1162 Predicted GTPases [Gen 97.3 0.00056 1.2E-08 76.6 7.6 58 492-556 165-230 (301)
414 PRK13796 GTPase YqeH; Provisio 97.2 0.00047 1E-08 79.3 6.6 55 491-552 160-220 (365)
415 KOG0082 G-protein alpha subuni 97.2 0.0049 1.1E-07 70.6 14.3 68 540-607 193-275 (354)
416 PRK13796 GTPase YqeH; Provisio 97.2 0.0019 4.1E-08 74.4 11.2 93 553-654 57-156 (365)
417 cd04089 eRF3_II eRF3_II: domai 97.2 0.0014 3.1E-08 59.6 8.1 61 669-732 2-64 (82)
418 cd03697 EFTU_II EFTU_II: Elong 97.2 0.0009 2E-08 61.6 6.7 62 671-733 3-68 (87)
419 cd04091 mtEFG1_II_like mtEFG1_ 97.2 0.0023 5E-08 58.0 9.2 73 670-745 2-79 (81)
420 PF03144 GTP_EFTU_D2: Elongati 97.2 0.00034 7.4E-09 61.6 3.6 63 683-745 1-73 (74)
421 PTZ00141 elongation factor 1- 97.2 0.011 2.3E-07 70.0 17.0 181 807-990 90-316 (446)
422 PRK12288 GTPase RsgA; Reviewed 97.1 0.00051 1.1E-08 78.6 5.5 57 493-556 207-271 (347)
423 PRK00771 signal recognition pa 97.1 0.0036 7.8E-08 73.8 12.6 146 489-649 93-275 (437)
424 cd03697 EFTU_II EFTU_II: Elong 97.1 0.0016 3.4E-08 60.0 7.3 78 911-989 4-84 (87)
425 cd03695 CysN_NodQ_II CysN_NodQ 97.1 0.0023 4.9E-08 58.5 8.3 61 671-732 3-65 (81)
426 cd03114 ArgK-like The function 97.1 0.0019 4.2E-08 65.2 8.4 58 541-605 91-148 (148)
427 PTZ00327 eukaryotic translatio 97.0 0.025 5.4E-07 67.3 18.3 183 807-989 122-348 (460)
428 cd01342 Translation_Factor_II_ 97.0 0.0051 1.1E-07 52.8 9.5 73 670-744 2-80 (83)
429 cd03699 lepA_II lepA_II: This 97.0 0.0044 9.5E-08 56.9 9.0 75 670-745 2-84 (86)
430 KOG0447 Dynamin-like GTP bindi 97.0 0.0095 2.1E-07 70.5 13.6 134 487-624 304-512 (980)
431 TIGR00157 ribosome small subun 97.0 0.00089 1.9E-08 72.9 5.1 56 492-555 121-184 (245)
432 cd03115 SRP The signal recogni 96.9 0.0066 1.4E-07 61.7 11.0 65 541-608 82-153 (173)
433 PRK04000 translation initiatio 96.9 0.028 6E-07 65.8 17.5 183 807-989 90-315 (411)
434 PRK06995 flhF flagellar biosyn 96.9 0.02 4.2E-07 68.5 16.2 146 489-648 254-434 (484)
435 PF00448 SRP54: SRP54-type pro 96.9 0.0022 4.9E-08 67.7 7.3 92 542-648 84-182 (196)
436 cd03692 mtIF2_IVc mtIF2_IVc: t 96.8 0.0087 1.9E-07 55.0 9.8 74 671-746 3-83 (84)
437 cd04090 eEF2_II_snRNP Loc2 eEF 96.8 0.0058 1.3E-07 57.1 8.5 73 671-744 3-90 (94)
438 KOG1707 Predicted Ras related/ 96.8 0.015 3.2E-07 69.8 13.6 158 488-658 422-584 (625)
439 COG1618 Predicted nucleotide k 96.7 0.056 1.2E-06 56.2 15.4 141 490-655 4-174 (179)
440 TIGR02034 CysN sulfate adenyly 96.7 0.077 1.7E-06 62.0 18.4 181 807-990 85-298 (406)
441 cd03700 eEF2_snRNP_like_II EF2 96.6 0.0081 1.8E-07 56.0 8.1 73 671-744 3-90 (93)
442 TIGR03348 VI_IcmF type VI secr 96.6 0.0031 6.7E-08 82.5 7.1 109 490-607 110-256 (1169)
443 TIGR00959 ffh signal recogniti 96.6 0.011 2.3E-07 69.7 10.8 94 541-649 182-282 (428)
444 PRK13695 putative NTPase; Prov 96.6 0.026 5.6E-07 57.8 12.3 74 563-654 94-170 (174)
445 TIGR00475 selB selenocysteine- 96.6 0.081 1.8E-06 64.7 18.4 178 806-988 54-257 (581)
446 TIGR03680 eif2g_arch translati 96.6 0.079 1.7E-06 61.9 17.4 182 807-988 85-309 (406)
447 KOG1424 Predicted GTP-binding 96.5 0.0016 3.6E-08 76.7 3.6 55 491-552 314-369 (562)
448 PRK10867 signal recognition pa 96.5 0.019 4E-07 67.9 12.3 94 541-649 183-283 (433)
449 PRK11537 putative GTP-binding 96.5 0.025 5.4E-07 64.3 12.8 138 490-638 3-186 (318)
450 PRK00098 GTPase RsgA; Reviewed 96.5 0.0034 7.5E-08 70.2 5.7 57 491-554 164-228 (298)
451 cd03110 Fer4_NifH_child This p 96.5 0.014 3.1E-07 59.5 9.7 81 540-622 91-171 (179)
452 cd01854 YjeQ_engC YjeQ/EngC. 96.5 0.0052 1.1E-07 68.5 6.7 58 492-556 162-227 (287)
453 cd03688 eIF2_gamma_II eIF2_gam 96.5 0.014 2.9E-07 57.0 8.6 66 666-732 3-90 (113)
454 PRK11889 flhF flagellar biosyn 96.5 0.046 1E-06 64.0 14.4 147 489-649 239-420 (436)
455 PF14578 GTP_EFTU_D4: Elongati 96.4 0.017 3.7E-07 53.4 8.8 77 667-747 3-81 (81)
456 PRK05124 cysN sulfate adenylyl 96.4 0.12 2.5E-06 61.9 18.2 180 807-990 112-326 (474)
457 PRK05506 bifunctional sulfate 96.4 0.13 2.7E-06 63.6 18.8 179 807-989 109-321 (632)
458 KOG2485 Conserved ATP/GTP bind 96.4 0.0045 9.7E-08 69.5 5.7 58 489-551 141-205 (335)
459 PRK14723 flhF flagellar biosyn 96.4 0.062 1.4E-06 67.3 16.1 146 490-649 184-367 (767)
460 KOG0705 GTPase-activating prot 96.4 0.0036 7.9E-08 74.1 5.1 146 492-655 31-187 (749)
461 TIGR01393 lepA GTP-binding pro 96.4 0.094 2E-06 64.4 17.4 178 807-989 75-274 (595)
462 cd02036 MinD Bacterial cell di 96.4 0.037 8.1E-07 55.7 11.7 76 543-620 64-140 (179)
463 PRK14721 flhF flagellar biosyn 96.3 0.027 5.7E-07 66.3 11.6 144 488-646 188-366 (420)
464 PRK05703 flhF flagellar biosyn 96.2 0.11 2.3E-06 61.4 16.1 91 541-646 299-397 (424)
465 cd04178 Nucleostemin_like Nucl 96.2 0.012 2.5E-07 61.1 6.9 41 567-607 1-43 (172)
466 PRK05433 GTP-binding protein L 96.1 0.15 3.3E-06 62.7 17.2 178 807-989 79-278 (600)
467 PF02492 cobW: CobW/HypB/UreG, 96.1 0.0098 2.1E-07 61.4 6.0 127 492-621 1-170 (178)
468 PF09547 Spore_IV_A: Stage IV 96.0 0.043 9.3E-07 64.3 11.0 155 491-653 17-233 (492)
469 PRK12724 flagellar biosynthesi 96.0 0.059 1.3E-06 63.5 12.2 146 490-649 222-402 (432)
470 cd04092 mtEFG2_II_like mtEFG2_ 96.0 0.056 1.2E-06 49.2 9.6 74 914-989 4-82 (83)
471 COG3640 CooC CO dehydrogenase 96.0 0.02 4.4E-07 62.4 7.7 63 542-607 134-198 (255)
472 PRK12723 flagellar biosynthesi 95.9 0.074 1.6E-06 62.1 12.9 147 489-649 172-356 (388)
473 cd04088 EFG_mtEFG_II EFG_mtEFG 95.9 0.058 1.3E-06 48.8 9.6 74 914-989 4-82 (83)
474 COG0523 Putative GTPases (G3E 95.9 0.056 1.2E-06 61.7 11.5 148 492-650 2-194 (323)
475 COG0552 FtsY Signal recognitio 95.9 0.16 3.4E-06 58.1 14.7 25 488-512 136-160 (340)
476 TIGR01394 TypA_BipA GTP-bindin 95.7 0.33 7.2E-06 59.7 17.7 78 909-988 202-284 (594)
477 COG1162 Predicted GTPases [Gen 95.6 0.062 1.3E-06 60.6 10.1 81 564-653 78-163 (301)
478 PRK12726 flagellar biosynthesi 95.6 0.051 1.1E-06 63.3 9.5 143 489-647 204-383 (407)
479 COG3276 SelB Selenocysteine-sp 95.5 0.3 6.6E-06 57.5 15.5 179 807-989 55-253 (447)
480 TIGR02475 CobW cobalamin biosy 95.5 0.1 2.2E-06 59.9 11.7 24 490-513 3-26 (341)
481 KOG3887 Predicted small GTPase 95.5 0.075 1.6E-06 58.2 9.7 150 491-653 27-198 (347)
482 KOG3859 Septins (P-loop GTPase 95.5 0.027 5.7E-07 62.6 6.4 133 490-623 41-210 (406)
483 KOG2484 GTPase [General functi 95.4 0.011 2.4E-07 68.3 3.5 59 487-552 248-307 (435)
484 KOG2423 Nucleolar GTPase [Gene 95.4 0.0074 1.6E-07 69.4 2.0 58 488-552 304-362 (572)
485 PRK06731 flhF flagellar biosyn 95.4 0.39 8.4E-06 53.7 15.3 146 489-648 73-253 (270)
486 cd02038 FleN-like FleN is a me 95.3 0.095 2.1E-06 52.1 9.1 104 495-606 4-109 (139)
487 cd02042 ParA ParA and ParB of 95.3 0.11 2.3E-06 48.4 8.9 71 494-577 2-73 (104)
488 COG3523 IcmF Type VI protein s 95.0 0.037 8E-07 71.9 6.7 108 490-607 124-269 (1188)
489 TIGR00487 IF-2 translation ini 95.0 0.75 1.6E-05 56.6 17.3 89 907-1002 261-352 (587)
490 PF00503 G-alpha: G-protein al 94.7 0.057 1.2E-06 62.6 6.6 80 524-606 221-315 (389)
491 COG1161 Predicted GTPases [Gen 94.7 0.14 3.1E-06 58.2 9.6 101 545-655 13-115 (322)
492 cd01983 Fer4_NifH The Fer4_Nif 94.4 0.16 3.5E-06 45.0 7.5 74 494-583 2-76 (99)
493 PRK05306 infB translation init 94.4 1.2 2.7E-05 56.5 17.6 87 909-1002 465-554 (787)
494 cd04091 mtEFG1_II_like mtEFG1_ 94.4 0.35 7.6E-06 43.9 9.7 72 914-988 4-79 (81)
495 COG1419 FlhF Flagellar GTP-bin 94.4 0.21 4.6E-06 58.4 10.2 143 489-647 201-379 (407)
496 cd03691 BipA_TypA_II BipA_TypA 94.0 0.32 7E-06 44.4 8.6 68 919-988 13-84 (86)
497 KOG0780 Signal recognition par 93.8 0.16 3.4E-06 59.0 7.6 116 488-606 98-252 (483)
498 cd03111 CpaE_like This protein 93.5 0.43 9.3E-06 45.4 8.9 97 497-603 6-106 (106)
499 PF13401 AAA_22: AAA domain; P 93.5 0.05 1.1E-06 52.1 2.5 26 490-515 3-28 (131)
500 PF08433 KTI12: Chromatin asso 93.4 0.39 8.4E-06 53.6 9.7 148 492-653 2-170 (270)
No 1
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.6e-121 Score=1026.41 Aligned_cols=590 Identities=51% Similarity=0.732 Sum_probs=527.6
Q ss_pred CCCccHHHHHHHhCCCHHHHHHHHHhCCCcccc---cccCCH----HHHHHHHHhcCCceeecChhhhHHhhhhcccCCh
Q 001745 409 EKGMLIEELARNLAIGEGEILGSLYSKGIKPEG---VQTLDK----DMVKMICKDYEVEVLDADPVKMEEMARKKDLFDE 481 (1018)
Q Consensus 409 ~~~itv~eLa~~l~~~~~~iik~L~~~G~~~~i---n~~Ld~----e~~~lla~E~g~~v~~~~~~~~e~l~~~~~~~~e 481 (1018)
+..|++.+||..++.+..++...|+..|...+. ...||. +++++++.+|++.....+.. .++.........+
T Consensus 65 ~~~m~~~kla~~~~~~~~~v~e~l~sv~~a~~~~~~~~~ld~~~I~ev~~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~ 143 (683)
T KOG1145|consen 65 WNYMTAAKLAAALKCSVDEVQEALLSVGFAYNLAIADSNLDTKGILEVVELILMKYRFVLLPAETS-VEEKAADVAPQPE 143 (683)
T ss_pred cccccHHHHhhhhcCCHHHHHHHHHhccccccccccccccchHHHHHHHHHHhhccccccCChhhh-hhhhhhhcccCCc
Confidence 468999999999999999999999999883221 133444 45566677777655433221 2222222334456
Q ss_pred hhhhccCCCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHh
Q 001745 482 EDLDKLEDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRAR 561 (1018)
Q Consensus 482 e~~~~l~~r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~r 561 (1018)
.+...+.+|||+|+||||+||||||||++|+++.++..+.+||||||++|.+.++ +| ..++|+|||||.+|..||.|
T Consensus 144 a~p~~l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G--~~iTFLDTPGHaAF~aMRaR 220 (683)
T KOG1145|consen 144 ADPKLLEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SG--KSITFLDTPGHAAFSAMRAR 220 (683)
T ss_pred cCHhhcCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CC--CEEEEecCCcHHHHHHHHhc
Confidence 6778889999999999999999999999999999999999999999999999987 44 67999999999999999999
Q ss_pred hhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHhcCCCCCCCCCCCcEEEEecCC
Q 001745 562 GARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (1018)
Q Consensus 562 g~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~e~~g~~vpiVeISAkt 641 (1018)
|++.+|+++|||+++||+|+||.|.|.|++.+++|+||++||||++++++++++.+|..+++..+.||++++++++||++
T Consensus 221 GA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~ 300 (683)
T KOG1145|consen 221 GANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISALT 300 (683)
T ss_pred cCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHhhhhcCCCCCCcceEEEEeeecCCCcEEEEEeEeeEEecCCEEEEccceeEEEEEeccCCCcc
Q 001745 642 GEKVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEAFGKVRALFDDSGNRV 721 (1018)
Q Consensus 642 GeGIdeLleaIl~lael~~lk~~p~r~~~g~ViEs~~dkg~G~VatglV~~GtLkvGD~Vv~G~~~gKVRaI~~~~g~~V 721 (1018)
|+|++.|.++++.++++++++++|..+++|+|+|+..++++|.++|++|++|||+.|+.++||.+|+|||+|+|++|+++
T Consensus 301 g~nl~~L~eaill~Ae~mdLkA~p~g~~eg~VIES~vdkg~G~~aT~iVkrGTLkKG~vlV~G~~w~KVr~l~D~nGk~i 380 (683)
T KOG1145|consen 301 GENLDLLEEAILLLAEVMDLKADPKGPAEGWVIESSVDKGRGPVATVIVKRGTLKKGSVLVAGKSWCKVRALFDHNGKPI 380 (683)
T ss_pred CCChHHHHHHHHHHHHHhhcccCCCCCceEEEEEeeecCCccceeEEEEeccccccccEEEEechhhhhhhhhhcCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCccEEEeccCCCCCCCCeEEEecChHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhHHHhhcCccC-------
Q 001745 722 DEAGPSIPVQIIGLNGVPIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGKVTLSSLASAVSAGKLS------- 794 (1018)
Q Consensus 722 ~eA~pg~~V~V~Gl~~vP~aGd~~~vv~~e~~Ar~~a~~r~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~------- 794 (1018)
++|.||+||+|.||+++|+|||.++.|++++.||++.+.|....+++++.....+.+..++...+++...+..
T Consensus 381 ~~A~Ps~pv~V~GwkdlP~aGD~vleVeSe~~Ar~~~~~R~~~~~~Ek~~~~~e~~~~~~~~~~~~~~a~r~~~~~~~~~ 460 (683)
T KOG1145|consen 381 DEATPSQPVEVLGWKDLPIAGDEVLEVESEDRARKVLSKRKDESEQEKISRDLEDIEEQREEAAEALLAKREEGENIGRK 460 (683)
T ss_pred cccCCCCceEeecccCCCCCCceEEEEecHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhhhccccc
Confidence 9999999999999999999999999999999999999999877766665433222233333333333221111
Q ss_pred -CCCc----ceeeEEEEcCCCccHHHHHHHHHhCCCCCeEEEEEEcccCCCCHhhHHHHHhcCCEEEEecCCCChhHHhH
Q 001745 795 -GLDL----HQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTY 869 (1018)
Q Consensus 795 -~~~~----~~l~vIiKaDv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG~ItesDV~lA~as~aiIi~FnV~~~~~a~~~ 869 (1018)
.++. +.+|+|||+|++||+|||.++|+.|++++|+++|+|+|||+||++|++||.+++|||+||||+.++..+++
T Consensus 461 ~~v~~~~~~~~~niIiK~DV~GS~EAv~d~L~tl~~~~v~l~~v~~gVG~vtesDlelA~~~daiI~~FnV~~~~~~~~~ 540 (683)
T KOG1145|consen 461 TRVELHEQNPLFNIIIKCDVQGSAEAVLDALSTLNSEQVKLNVVHSGVGPVTESDLELAQASDAIIYGFNVKASPSVKQL 540 (683)
T ss_pred eecccccCCcceEEEEEecccchHHHHHHHHhhcCCCceEEEEEEeccCCCCcchhHHHHhcCcEEEEEecCCChHHHHH
Confidence 1233 34999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCceEEEechHhHHHHHHHHHHhcccccceeeeeeEeEEEEEEeecCC--c--eEEEEEEeeeeEeeCCcEEEeeCC
Q 001745 870 ADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS--G--RVAGCMVSEGKLVKGCGIRVIRDG 945 (1018)
Q Consensus 870 A~~~~V~I~~~~IIY~Liddik~~~~~~l~~~~~e~~~G~A~V~~vF~~~~--g--~IaGc~V~~G~i~~~~~vrviR~g 945 (1018)
|++.||+|+.|||||+||||+++.|.+.|+|..+++++|+|+|+++|.++. + .||||+|++|++.+.+.+|++|||
T Consensus 541 a~~~gVkI~~~nVIY~LieDv~~~ls~rlp~v~e~~vvGea~Vl~~F~i~~~rkr~~VAGC~V~~G~~~K~~~~rlvR~g 620 (683)
T KOG1145|consen 541 AAAKGVKIRLYNVIYRLIEDVRELLSERLPPVEEQEVVGEAEVLATFDIREKRKRVPVAGCRVNNGVIKKSCKIRLVRNG 620 (683)
T ss_pred HhccCceEeehhHHHHHHHHHHHHHHhhCCCceEEeeccceeeeeeEeeccccccccccceEeecceEeecceEEEEeCC
Confidence 999999999999999999999999999999999999999999999998643 3 499999999999999999999999
Q ss_pred EEEEEEEEeeeecccccccccccCceeEEEEccCC-CCCCCCEEEEEEEEEeehhHHHHHH
Q 001745 946 KTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYD-DLEEGDIIEAFNSIQRKRTLEEASA 1005 (1018)
Q Consensus 946 ~vi~~G~i~SLk~~k~dV~ev~~G~EcGi~i~~f~-d~~~GD~ie~y~~~~~~~~l~~~~~ 1005 (1018)
+|||+|.|.||||.|+||++|++|.||||.|++|| +|++||+|+||+ .++.+++++.
T Consensus 621 ~vV~~G~l~SlKh~KedV~~vkkg~ECGl~~~d~~~~f~~GD~i~~ye---~k~i~~e~~~ 678 (683)
T KOG1145|consen 621 KVVFEGELDSLKHLKEDVTEVKKGHECGLTFDDGNEDFKEGDKIQCYE---KKRILEETSW 678 (683)
T ss_pred cEEEEechhHHhhhhhhhhhhcCCCeeeeEeccCCcCCCcCCEEEEee---hhhhhhhccc
Confidence 99999999999999999999999999999999999 999999999999 5666676554
No 2
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=100.00 E-value=4.2e-114 Score=1040.40 Aligned_cols=567 Identities=54% Similarity=0.871 Sum_probs=528.9
Q ss_pred CCCccHHHHHHHhCCCHHHHHHHHHhCCCcccccccCCHHHHHHHHHhcCCceeecChhhhHHhhhhcccCChhhhhccC
Q 001745 409 EKGMLIEELARNLAIGEGEILGSLYSKGIKPEGVQTLDKDMVKMICKDYEVEVLDADPVKMEEMARKKDLFDEEDLDKLE 488 (1018)
Q Consensus 409 ~~~itv~eLa~~l~~~~~~iik~L~~~G~~~~in~~Ld~e~~~lla~E~g~~v~~~~~~~~e~l~~~~~~~~ee~~~~l~ 488 (1018)
+++|||.|||.+|+++..+||+.||.+|+|+++|+.||+++++++|+|||+++....... +++...+.
T Consensus 220 ~~~itv~ela~~~~~~~~~ii~~l~~~g~~~~~n~~l~~~~~~~i~~e~g~~~~~~~~~~------------~~~~~~~~ 287 (787)
T PRK05306 220 PETITVAELAEKMAVKAAEVIKKLFKLGVMATINQSLDQETAELLAEEFGHEVKLVSLLE------------DDDEEDLV 287 (787)
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHcCCeecCCCccCHHHHHHHHHHcCCEEEEccccc------------cccccccc
Confidence 689999999999999999999999999999999999999999999999999875433211 12233467
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCE
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADi 568 (1018)
.|+|+|+||||+|||||||+++|++.++..++.+|+|++++++.+.+ + ++.++|||||||+.|..++.+++..+|+
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~--~--~~~ItfiDTPGhe~F~~m~~rga~~aDi 363 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVET--N--GGKITFLDTPGHEAFTAMRARGAQVTDI 363 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEE--C--CEEEEEEECCCCccchhHHHhhhhhCCE
Confidence 89999999999999999999999998888888899999999988765 2 3679999999999999999999999999
Q ss_pred EEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCChHHH
Q 001745 569 AVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDL 648 (1018)
Q Consensus 569 VILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGeGIdeL 648 (1018)
+|||||+++++++||.+++.++...++|+||++||+|+++++.+++..++..+++..+.|++++++|++||++|.||++|
T Consensus 364 aILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eL 443 (787)
T PRK05306 364 VVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDEL 443 (787)
T ss_pred EEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHH
Confidence 99999999999999999999999999999999999999888888888888888888888888899999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCCcceEEEEeeecCCCcEEEEEeEeeEEecCCEEEEccceeEEEEEeccCCCcccccCCCc
Q 001745 649 LETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEAFGKVRALFDDSGNRVDEAGPSI 728 (1018)
Q Consensus 649 leaIl~lael~~lk~~p~r~~~g~ViEs~~dkg~G~VatglV~~GtLkvGD~Vv~G~~~gKVRaI~~~~g~~V~eA~pg~ 728 (1018)
+++|..++++.++..++++++.++|++++.++++|++++++|++|+|++||.|++|+.+++|++|++++++.+++|.||+
T Consensus 444 le~I~~~~e~~~l~~~~~~~~~g~V~es~~dkg~G~v~~v~V~sGtLk~Gd~vv~g~~~gkVr~m~~~~~~~v~~A~pGd 523 (787)
T PRK05306 444 LEAILLQAEVLELKANPDRPARGTVIEAKLDKGRGPVATVLVQNGTLKVGDIVVAGTTYGRVRAMVDDNGKRVKEAGPST 523 (787)
T ss_pred HHhhhhhhhhhhcccCCCCCcEEEEEEEEEcCCCeEEEEEEEecCeEecCCEEEECCcEEEEEEEECCCCCCCCEEcCCC
Confidence 99999887777888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEeccCCCCCCCCeEEEecChHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhHHHhhcCccCCCCcceeeEEEEcC
Q 001745 729 PVQIIGLNGVPIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGKVTLSSLASAVSAGKLSGLDLHQLNVIMKVD 808 (1018)
Q Consensus 729 ~V~V~Gl~~vP~aGd~~~vv~~e~~Ar~~a~~r~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~vIiKaD 808 (1018)
+|.|.||+++|.+||.|.++.+++.||+++++|.+..++..+.. ...++|++++..+..+. .+++++|||||
T Consensus 524 ~V~I~gl~~~p~~Gd~l~~~~~e~~a~~~~~~r~~~~~~~~~~~---~~~~~l~~~~~~~~~~~-----~~~~~~iikad 595 (787)
T PRK05306 524 PVEILGLSGVPQAGDEFVVVEDEKKAREIAEYRQEKAREKKLAR---QQRVSLENLFEQMKEGE-----VKELNLIIKAD 595 (787)
T ss_pred eEEEeCCCCCCCCCCEEEEcCCHHHHHHHHHHHHHHHHHHHhhh---ccccCHHHhhhhhhcCC-----ceEEEEEEEeC
Confidence 99999999999999999999999999999999988777765543 23577888877665442 46899999999
Q ss_pred CCccHHHHHHHHHhCCCCCeEEEEEEcccCCCCHhhHHHHHhcCCEEEEecCCCChhHHhHHHhcCceEEEechHhHHHH
Q 001745 809 VQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLID 888 (1018)
Q Consensus 809 v~GSlEAi~~~L~~l~~~~v~i~ii~~~VG~ItesDV~lA~as~aiIi~FnV~~~~~a~~~A~~~~V~I~~~~IIY~Lid 888 (1018)
++||+|||.++|.+|++++++++|+|++||+||++||++|.+++|+||||||++++.++++|+++||+|++|+|||+|||
T Consensus 596 ~~Gs~eai~~~l~~l~~~~v~~~i~~~~vG~it~~Dv~la~~~~a~ii~Fnv~~~~~~~~~a~~~~v~i~~~~iIY~l~d 675 (787)
T PRK05306 596 VQGSVEALKDSLEKLSTDEVKVNIIHSGVGAITESDVTLAAASNAIIIGFNVRPDAKARKLAEQEGVDIRYYSIIYDLID 675 (787)
T ss_pred CcchHHHHHHHHHhhcccCCceEEEeeccCCCCHHHHHHHHhcCCEEEEEcCCCCHHHHHHHHHcCCEEEEeChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccccceeeeeeEeEEEEEEeec-CCceEEEEEEeeeeEeeCCcEEEeeCCEEEEEEEEeeeecccccccccc
Q 001745 889 DMRNAMEGLLETVEEQVPIGSAEVRAIFSS-GSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVN 967 (1018)
Q Consensus 889 dik~~~~~~l~~~~~e~~~G~A~V~~vF~~-~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~i~SLk~~k~dV~ev~ 967 (1018)
||+++|+++|+|.++|+++|.|+|+++|+. +.|+||||+|++|+|++|+.+||+|||++||+|+|.||||||+||+||+
T Consensus 676 ~~~~~~~~~l~~~~~e~~~g~a~v~~vF~~~k~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~v~ev~ 755 (787)
T PRK05306 676 DVKAAMSGMLEPEYEEEIIGQAEVREVFKVSKVGTIAGCMVTEGKIKRNAKVRVLRDGVVIYEGELESLKRFKDDVKEVR 755 (787)
T ss_pred HHHHHHhhccCchhheeeeeeEEEEEEEecCCCCeEEEEEEeeCEEecCCeEEEEeCCEEEEEeEEehhcccCcCccEeC
Confidence 999999999999999999999999999996 4599999999999999999999999999999999999999999999999
Q ss_pred cCceeEEEEccCCCCCCCCEEEEEEEEEeehh
Q 001745 968 AGLECGVGAADYDDLEEGDIIEAFNSIQRKRT 999 (1018)
Q Consensus 968 ~G~EcGi~i~~f~d~~~GD~ie~y~~~~~~~~ 999 (1018)
+|+||||.|++|+||++||+||||++++++|+
T Consensus 756 ~g~ecgi~~~~~~d~~~gD~ie~~~~~~~~~~ 787 (787)
T PRK05306 756 AGYECGIGLENYNDIKEGDIIEAYEMVEVKRT 787 (787)
T ss_pred CCCEEEEEeeccccCCCCCEEEEEEEEEecCC
Confidence 99999999999999999999999999999875
No 3
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=100.00 E-value=1.4e-111 Score=997.20 Aligned_cols=577 Identities=52% Similarity=0.820 Sum_probs=529.3
Q ss_pred CCCccHHHHHHHhCCCHHHHHHHHHhCCCcccccccCCHHHHHHHHHhcCCceeecChhhhHHhhhhcccCChhhhhccC
Q 001745 409 EKGMLIEELARNLAIGEGEILGSLYSKGIKPEGVQTLDKDMVKMICKDYEVEVLDADPVKMEEMARKKDLFDEEDLDKLE 488 (1018)
Q Consensus 409 ~~~itv~eLa~~l~~~~~~iik~L~~~G~~~~in~~Ld~e~~~lla~E~g~~v~~~~~~~~e~l~~~~~~~~ee~~~~l~ 488 (1018)
++++||.|||.+|+++..++++.||.+|+++++|+.||.++++++|+|||+++.........+.. ...+++...+.
T Consensus 9 ~~~~~v~~la~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 84 (587)
T TIGR00487 9 GGTLTVSELANKMNIKVSDIIKKLMLLGVMVTINQVLDKETAELVAEEFGVKVEVRVTLEETEAE----EQDEDSGDLLV 84 (587)
T ss_pred CCCeEHHHHHHHHCcCHHHHHHHHHHCCCEecCCcCcCHHHHHHHHHHhCCceEEeccchhhhhh----ccccccccccc
Confidence 68999999999999999999999999999999999999999999999999987543222211111 11122234578
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCE
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADi 568 (1018)
.|+|+|+||||+|||||||+++|++.++...+.+|+|++++++.+.+. + ...++|||||||+.|..++.+++..+|+
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~--~-~~~i~~iDTPGhe~F~~~r~rga~~aDi 161 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENE--D-GKMITFLDTPGHEAFTSMRARGAKVTDI 161 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEEC--C-CcEEEEEECCCCcchhhHHHhhhccCCE
Confidence 899999999999999999999999999888888999999998877652 2 2279999999999999999999999999
Q ss_pred EEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCChHHH
Q 001745 569 AVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDL 648 (1018)
Q Consensus 569 VILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGeGIdeL 648 (1018)
+|||||++++.++||.+++.+++..++|+|+++||+|+++.+.+++..++..+++..+.|+++++++++||++|+||++|
T Consensus 162 aILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eL 241 (587)
T TIGR00487 162 VVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDEL 241 (587)
T ss_pred EEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHH
Confidence 99999999999999999999999999999999999999888888888888888887788888899999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCCcceEEEEeeecCCCcEEEEEeEeeEEecCCEEEEccceeEEEEEeccCCCcccccCCCc
Q 001745 649 LETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEAFGKVRALFDDSGNRVDEAGPSI 728 (1018)
Q Consensus 649 leaIl~lael~~lk~~p~r~~~g~ViEs~~dkg~G~VatglV~~GtLkvGD~Vv~G~~~gKVRaI~~~~g~~V~eA~pg~ 728 (1018)
+++|..+.++..+..+++.++.++|++++.++++|++++++|++|+|++||.|++|+.+++||+|++.+|+.+++|.||+
T Consensus 242 l~~I~~~~~~~~l~~~~~~~~~~~V~ev~~~~g~G~v~~~~V~~GtL~~Gd~iv~~~~~~kVr~l~~~~g~~v~~a~~g~ 321 (587)
T TIGR00487 242 LDMILLQSEVEELKANPNGQASGVVIEAQLDKGRGPVATVLVQSGTLRVGDIVVVGAAYGRVRAMIDENGKSVKEAGPSK 321 (587)
T ss_pred HHhhhhhhhhccccCCCCCCceeEEEEEEEeCCCcEEEEEEEEeCEEeCCCEEEECCCccEEEEEECCCCCCCCEECCCC
Confidence 99998887787888889999999999999999999999999999999999999999999999999999899999999999
Q ss_pred cEEEeccCCCCCCCCeEEEecChHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhHHHhhcCccCCCCcceeeEEEEcC
Q 001745 729 PVQIIGLNGVPIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGKVTLSSLASAVSAGKLSGLDLHQLNVIMKVD 808 (1018)
Q Consensus 729 ~V~V~Gl~~vP~aGd~~~vv~~e~~Ar~~a~~r~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~vIiKaD 808 (1018)
+|.|.||+++|.|||.|.++++++.||++++.|.+..++..+.. ..++++++++..+..+ +.+.+++|||||
T Consensus 322 ~v~i~Gl~~~p~aGd~~~~~~~e~~a~~~~~~r~~~~~~~~~~~---~~~~~~~~~~~~~~~~-----~~~~~~viikad 393 (587)
T TIGR00487 322 PVEILGLSDVPAAGDEFIVFKDEKDARLVAEKRAGKLRQKALSR---SVKVTLDNLFEQIKEG-----ELKELNIILKAD 393 (587)
T ss_pred EEEEeCCCCCCCCCCEEEEcCCHHHHHHHHHHHHHHHHHHhhhh---ccccchhHhhhhhhcc-----CCceEEEEEEeC
Confidence 99999999999999999999999999999999987776654432 2346777777666544 257899999999
Q ss_pred CCccHHHHHHHHHhCCCCCeEEEEEEcccCCCCHhhHHHHHhcCCEEEEecCCCChhHHhHHHhcCceEEEechHhHHHH
Q 001745 809 VQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLID 888 (1018)
Q Consensus 809 v~GSlEAi~~~L~~l~~~~v~i~ii~~~VG~ItesDV~lA~as~aiIi~FnV~~~~~a~~~A~~~~V~I~~~~IIY~Lid 888 (1018)
++||+|||.++|.+|++++++++|++++||+||++||++|.+++|+||||||+++++++++|+++||+|++|+|||||+|
T Consensus 394 ~~Gs~eal~~~l~~~~~~~~~~~v~~~~vG~i~~~Dv~~a~~~~a~i~~Fnv~~~~~~~~~a~~~~v~i~~~~iIY~l~d 473 (587)
T TIGR00487 394 VQGSLEAIKNSLEKLNNEEVKVKVIHSGVGGITETDISLASASNAIIIGFNVRPDATAKNVAEAENVDIRYYSVIYKLID 473 (587)
T ss_pred CcchHHHHHHHHHhhcccCCeEEEEEeecCCCchhhHHHHHhcCCEEEEEecCCCHHHHHHHHHcCCeEEEeChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccccceeeeeeEeEEEEEEeec-CCceEEEEEEeeeeEeeCCcEEEeeCCEEEEEEEEeeeecccccccccc
Q 001745 889 DMRNAMEGLLETVEEQVPIGSAEVRAIFSS-GSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVN 967 (1018)
Q Consensus 889 dik~~~~~~l~~~~~e~~~G~A~V~~vF~~-~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~i~SLk~~k~dV~ev~ 967 (1018)
+++++|+++|+|.++|+++|+|+|+++|+. +.|+||||+|++|+|++|+++||+|||++||+|+|.||||+|+||+||+
T Consensus 474 ~~~~~~~~~~~~~~~~~~~g~a~v~~vf~~~~~~~iaG~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~ 553 (587)
T TIGR00487 474 EIRAAMKGMLDPEYEEEIIGQAEVRQVFNVPKIGNIAGCYVTEGVIKRGNPLRVIRDGVVIFEGEIDSLKRFKDDVKEVS 553 (587)
T ss_pred HHHHHHHhccCcceeeEeeeeEEEEEEEecCCCCEEEEEEEecCEEecCCeEEEEeCCEEEEeccchHhhccCccccEEC
Confidence 999999999999999999999999999996 4599999999999999999999999999999999999999999999999
Q ss_pred cCceeEEEEccCCCCCCCCEEEEEEEEEeehhH
Q 001745 968 AGLECGVGAADYDDLEEGDIIEAFNSIQRKRTL 1000 (1018)
Q Consensus 968 ~G~EcGi~i~~f~d~~~GD~ie~y~~~~~~~~l 1000 (1018)
+|+||||.|++|+||++||+||||+.++++|+|
T Consensus 554 ~g~ecgi~~~~~~~~~~gD~i~~~~~~~~~~~l 586 (587)
T TIGR00487 554 NGYECGIGIKNYNDIKEGDIIEAFEVQEVKRTL 586 (587)
T ss_pred CCCEEEEEEeccccCCCCCEEEEEEEEEecccc
Confidence 999999999999999999999999999999986
No 4
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-112 Score=969.89 Aligned_cols=506 Identities=55% Similarity=0.871 Sum_probs=478.3
Q ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCC
Q 001745 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTD 567 (1018)
Q Consensus 488 ~~r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~AD 567 (1018)
..|+|+|+||||+||||||||++|+++++..++++||||||++|++.+... ....|+|+|||||++|+.||.||++.+|
T Consensus 2 ~~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~-~~~~itFiDTPGHeAFt~mRaRGa~vtD 80 (509)
T COG0532 2 ELRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVI-KIPGITFIDTPGHEAFTAMRARGASVTD 80 (509)
T ss_pred CCCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccC-CCceEEEEcCCcHHHHHHHHhcCCcccc
Confidence 469999999999999999999999999999999999999999999987532 3357999999999999999999999999
Q ss_pred EEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCChHH
Q 001745 568 IAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDD 647 (1018)
Q Consensus 568 iVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGeGIde 647 (1018)
++|||||++||++|||.|.++|++.+++|+||++||||+++.+++++..++.++++..+.|++++.++++||++|+||++
T Consensus 81 IaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~e 160 (509)
T COG0532 81 IAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDE 160 (509)
T ss_pred EEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCcceEEEEeeecCCCcEEEEEeEeeEEecCCEEEEccceeEEEEEeccCCCcccccCCC
Q 001745 648 LLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEAFGKVRALFDDSGNRVDEAGPS 727 (1018)
Q Consensus 648 LleaIl~lael~~lk~~p~r~~~g~ViEs~~dkg~G~VatglV~~GtLkvGD~Vv~G~~~gKVRaI~~~~g~~V~eA~pg 727 (1018)
|++.|+.+++..+++++|+.++.|+|+|+..++|+|++++++|++|||++||.|++|..||+|++|++..+++++.+.|+
T Consensus 161 LL~~ill~aev~elka~~~~~a~gtviE~~~dkG~G~vatviv~~GtL~~GD~iv~g~~~g~I~t~v~~~~~~i~~a~ps 240 (509)
T COG0532 161 LLELILLLAEVLELKANPEGPARGTVIEVKLDKGLGPVATVIVQDGTLKKGDIIVAGGEYGRVRTMVDDLGKPIKEAGPS 240 (509)
T ss_pred HHHHHHHHHHHHhhhcCCCCcceEEEEEEEeccCCCceEEEEEecCeEecCCEEEEccCCCceEEeehhcCCCccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEeccCCCCCCCCeEEEecChHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhHHHhhcCccCCCCcceeeEEEEc
Q 001745 728 IPVQIIGLNGVPIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGKVTLSSLASAVSAGKLSGLDLHQLNVIMKV 807 (1018)
Q Consensus 728 ~~V~V~Gl~~vP~aGd~~~vv~~e~~Ar~~a~~r~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~vIiKa 807 (1018)
.++.+.||+++|.||+.|.++++++.||+.++.|....+..... .....+++++++.+... .+.+.+|+|+||
T Consensus 241 ~~v~i~g~~evp~Ag~~~~v~~~e~~A~~~~~~r~~~~~~~~~~---~~~~~~~~~~~~~~~~~----~~~k~~~viiKa 313 (509)
T COG0532 241 KPVEILGLSEVPAAGDVFIVVKDEKKARAIAELRVVLLREAELA---SKKKGELEELIAEIKIR----GELKELNVILKA 313 (509)
T ss_pred CCeEEeccccccccCceEEecCChHHHhhhhhHhhhhhhhhhhh---hHHHHHHHHHHHhhhcc----CCcceecEEEEE
Confidence 99999999999999999999999999999999887552221111 12244566666655421 135789999999
Q ss_pred CCCccHHHHHHHHHhCCCCCeEEEEEEcccCCCCHhhHHHHHhcCCEEEEecCCCChhHHhHHHhcCceEEEechHhHHH
Q 001745 808 DVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLI 887 (1018)
Q Consensus 808 Dv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG~ItesDV~lA~as~aiIi~FnV~~~~~a~~~A~~~~V~I~~~~IIY~Li 887 (1018)
|++||+|||.++|+++..++++++|+|++||+||++||++|++++|+||||||++++.|+++|++++|+||+|+|||+|+
T Consensus 314 Dt~GSlEAL~~~L~~~~~~~v~~~i~~~~VG~ite~DV~lA~as~avIigFnV~~~~~a~~~ae~~~V~I~~~~iIY~li 393 (509)
T COG0532 314 DTQGSLEALKGSLKKLGVDEVKVRIIHAGVGGITESDVMLAAASDAVIIGFNVRVDPEARRLAESEGVKIRYYDVIYKLI 393 (509)
T ss_pred cccchHHHHHHHHHhcCCCceEEEEEEeecCCCChhhHHHHHhcCCEEEEEecCCCHHHHHHHHhcCCcEEEcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccceeeeeeEeEEEEEEeec-CCceEEEEEEeeeeEeeCCcEEEeeCCEEEEEEEEeeeeccccccccc
Q 001745 888 DDMRNAMEGLLETVEEQVPIGSAEVRAIFSS-GSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEV 966 (1018)
Q Consensus 888 ddik~~~~~~l~~~~~e~~~G~A~V~~vF~~-~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~i~SLk~~k~dV~ev 966 (1018)
||+++||+++|+|.++|+++|.|+++++|.. +.|.||||+|++|++++|+++|++|||.+||+|+|.||||||+||+||
T Consensus 394 ed~~~~~~g~l~p~~~e~~~g~~~~r~v~~~~k~g~IaG~~V~~G~ikr~~~v~~~rd~~vi~~G~i~sLk~~kddv~ev 473 (509)
T COG0532 394 EDVEAAMKGMLEPEKKERVIGLAEVRAVFKLPKVGAIAGCMVTEGVIKRGAPVRVVRDGVVIYEGEVESLKRFKDDVKEV 473 (509)
T ss_pred HHHHHHHHhccchhhhhhcccceEEEEEEEcCCCCeEEEEEEecCEEecCCcEEEEeCCeEEEeeEEEeeeccCccHhHh
Confidence 9999999999999999999999999999994 679999999999999999999999999999999999999999999999
Q ss_pred ccCceeEEEEccCCCCCCCCEEEEEEEEEeehhHH
Q 001745 967 NAGLECGVGAADYDDLEEGDIIEAFNSIQRKRTLE 1001 (1018)
Q Consensus 967 ~~G~EcGi~i~~f~d~~~GD~ie~y~~~~~~~~l~ 1001 (1018)
++|+||||.|+||+||++||+||||+.++.+|+|.
T Consensus 474 ~~G~ecgI~i~~~~di~~gD~le~~~~~~~~r~l~ 508 (509)
T COG0532 474 RKGQECGIAIENYRDIKEGDILEVFEPVEVKRTLK 508 (509)
T ss_pred ccCcEEEEEecCcccCCCCCEEEEEEEEeechhhc
Confidence 99999999999999999999999999999999875
No 5
>CHL00189 infB translation initiation factor 2; Provisional
Probab=100.00 E-value=3e-111 Score=1008.41 Aligned_cols=580 Identities=43% Similarity=0.710 Sum_probs=529.8
Q ss_pred CCCccHHHHHHHhCCCHHHHHHHHHhCCCcccccccCCHHHHHHHHHhcCCceeecChhhhHHhhhhcccCChhhhhccC
Q 001745 409 EKGMLIEELARNLAIGEGEILGSLYSKGIKPEGVQTLDKDMVKMICKDYEVEVLDADPVKMEEMARKKDLFDEEDLDKLE 488 (1018)
Q Consensus 409 ~~~itv~eLa~~l~~~~~~iik~L~~~G~~~~in~~Ld~e~~~lla~E~g~~v~~~~~~~~e~l~~~~~~~~ee~~~~l~ 488 (1018)
++++||.|||.+|++++.+||+.||.+|+|+++|+.||.++++++|++||+++........+++... ....+++...+.
T Consensus 163 ~~~~tv~~la~~~~~~~~~ii~~l~~~g~~~~~n~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~ 241 (742)
T CHL00189 163 HSPLTIQELSTLLCIPETEIIKSLFLKGISVTVNQIIDISIISQVADDFGINIISEEKNNINEKTSN-LDNTSAFTENSI 241 (742)
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHcCcCccCCCccCHHHHHHHHHHcCCeEEEeccchhhhhhhc-ccccccchhhhc
Confidence 6899999999999999999999999999999999999999999999999999764433322222211 111111234578
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCE
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADi 568 (1018)
.|+|+|+||||+|||||||+++|+...+...+.+|+|+++++|.+.+.+++.++.++|||||||+.|..++.+++..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 89999999999999999999999998888888899999999998877665566889999999999999999999999999
Q ss_pred EEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCChHHH
Q 001745 569 AVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDL 648 (1018)
Q Consensus 569 VILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGeGIdeL 648 (1018)
+|||||+++++++||.+++.++...++|+|||+||+|+...+.+++.+++..+++..+.|++.++++++||++|.||++|
T Consensus 322 aILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeL 401 (742)
T CHL00189 322 AILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKL 401 (742)
T ss_pred EEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHH
Confidence 99999999999999999999999999999999999999887778888888877777777888899999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCCcceEEEEeeecCCCcEEEEEeEeeEEecCCEEEEccceeEEEEEeccCCCcccccCCCc
Q 001745 649 LETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEAFGKVRALFDDSGNRVDEAGPSI 728 (1018)
Q Consensus 649 leaIl~lael~~lk~~p~r~~~g~ViEs~~dkg~G~VatglV~~GtLkvGD~Vv~G~~~gKVRaI~~~~g~~V~eA~pg~ 728 (1018)
+++|..++++..+..+++.++.++|+++..++++|++++++|++|+|++||.|++|+.+|+|++|++.+++.+++|.||+
T Consensus 402 le~I~~l~e~~~lk~~~~~~~~g~V~e~~iD~~~G~V~~~~V~sGtLr~GD~vv~g~~~gkVr~m~~~~~~~v~~a~pgd 481 (742)
T CHL00189 402 LETILLLAEIEDLKADPTQLAQGIILEAHLDKTKGPVATILVQNGTLHIGDIIVIGTSYAKIRGMINSLGNKINLATPSS 481 (742)
T ss_pred HHhhhhhhhhhcccCCCCCCceEEEEEEEEcCCCceEEEEEEEcCEEecCCEEEECCcceEEEEEEcCCCcCccEEcCCC
Confidence 99999888887888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEeccCCCCCCCCeEEEecChHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhHHHhhcCccCCCCcceeeEEEEcC
Q 001745 729 PVQIIGLNGVPIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGKVTLSSLASAVSAGKLSGLDLHQLNVIMKVD 808 (1018)
Q Consensus 729 ~V~V~Gl~~vP~aGd~~~vv~~e~~Ar~~a~~r~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~vIiKaD 808 (1018)
+|.|.||+++|.+||.|+++++++.||++++.+.+..+... ...++++++...+..+ ..+++++|||||
T Consensus 482 iV~I~gl~~~~~~Gd~l~v~~~e~~a~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-----~~~~~~~iiKad 550 (742)
T CHL00189 482 VVEIWGLSSVPATGEHFQVFNSEKEAKLKIIKNKENNKKDT------TKRITLSTTKTINKKD-----NKKQINLIIKTD 550 (742)
T ss_pred ceEecCcccCCCCCCEEEEeCCHHHHHHHHHHHHHHHHHhh------hcccchHHHHHHhhhc-----CCceeeEEEEeC
Confidence 99999999999999999999999999999988765543221 1245666666655544 357899999999
Q ss_pred CCccHHHHHHHHHhCCCCCeEEEEEEcccCCCCHhhHHHHHhcCCEEEEecCCCChhHHhHHHhcCceEEEechHhHHHH
Q 001745 809 VQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLID 888 (1018)
Q Consensus 809 v~GSlEAi~~~L~~l~~~~v~i~ii~~~VG~ItesDV~lA~as~aiIi~FnV~~~~~a~~~A~~~~V~I~~~~IIY~Lid 888 (1018)
++||+|||.++|.+|++++|+++|++++||+||++||++|.+++|+||||||+++++++++|+++||+|+.|+|||+|||
T Consensus 551 ~~Gs~EAi~~~l~~~~~~~v~i~i~~~~vG~it~~Dv~lA~~~~a~ii~Fnv~~~~~~~~~a~~~~v~i~~~~iIY~lid 630 (742)
T CHL00189 551 TQGSIEAIINSISQIPQKKVQLNILYASLGEVTETDVEFASTTNAEILAFNTNLAPGAKKAARKLNIIIKEYQVIYDLLE 630 (742)
T ss_pred CcchHHHHHHHHHhcCCCcEEEEEEEeecCCCCHHHHHHHHhcCCEEEEeeCCCCHHHHHHHHHcCCEEEEeChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccccceeeeeeEeEEEEEEeecCCceEEEEEEeeeeEeeCCcEEEeeCCEEEEEEEEeeeeccccccccccc
Q 001745 889 DMRNAMEGLLETVEEQVPIGSAEVRAIFSSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNA 968 (1018)
Q Consensus 889 dik~~~~~~l~~~~~e~~~G~A~V~~vF~~~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~i~SLk~~k~dV~ev~~ 968 (1018)
|++++|+++|+|.++|+++|+|+|++||+.++|+||||+|++|+|++|+.+||+|+|++||+|+|.||||+|+||+||++
T Consensus 631 ~~~~~~~~~l~~~~~~~~~g~a~v~~vF~~~k~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~G~i~slk~~k~~v~ev~~ 710 (742)
T CHL00189 631 YIEALMEDLLDPEYKKVPIGEAEVKTVFPLAKRFVAGCRVTEGKITKNALIKVIRENKLIYEGKITSLKRVKEDVEEAQE 710 (742)
T ss_pred HHHHHHhhccCceeeeeeceeEEeeEEEecCCCEEEEEEEecCEEecCCeEEEEeCCeEEEEeEEhhHhhcCccccEeCC
Confidence 99999999999999999999999999999877999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEEccCCCCCCCCEEEEEEEEEeehhH
Q 001745 969 GLECGVGAADYDDLEEGDIIEAFNSIQRKRTL 1000 (1018)
Q Consensus 969 G~EcGi~i~~f~d~~~GD~ie~y~~~~~~~~l 1000 (1018)
|+||||.|++|+||++||+||||++++++|+|
T Consensus 711 g~ecgi~i~~~~d~~~gD~ie~y~~~~~~~~l 742 (742)
T CHL00189 711 GNECGIFIEEFQLWQSGDKIHAFELIPKKKSL 742 (742)
T ss_pred CCEEEEEeeCCCCCCcCCEEEEEEEEEecCCC
Confidence 99999999999999999999999999999986
No 6
>PRK04004 translation initiation factor IF-2; Validated
Probab=100.00 E-value=2.6e-87 Score=791.89 Aligned_cols=481 Identities=37% Similarity=0.547 Sum_probs=417.6
Q ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecC----Cce----------ecEEEEeCCCcc
Q 001745 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVD----GKL----------QPCVFLDTPGHE 553 (1018)
Q Consensus 488 ~~r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~d----gk~----------~~ItfIDTPGHE 553 (1018)
..|+|+|+||||+|||||||+++|++..+...+.+++|++++++.+..... +.. ..++|||||||+
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 569999999999999999999999998888888899999999887654321 110 127999999999
Q ss_pred chHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCC-CCCh--------------H------
Q 001745 554 AFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKD-GANP--------------E------ 612 (1018)
Q Consensus 554 ~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~-~a~~--------------e------ 612 (1018)
.|..++.+++..+|++|||||+++++++|+.+++.++...++|+|+++||+|+. .+.. .
T Consensus 83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~~f 162 (586)
T PRK04004 83 AFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQEL 162 (586)
T ss_pred HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999984 2221 1
Q ss_pred -----HHHHHHHhcCCCCC------CCCCCCcEEEEecCCCCChHHHHHHHHHHHH--H-hhhhcCCCCCCcceEEEEee
Q 001745 613 -----RVMQELSSIGLMPE------DWGGDIPMVQISALKGEKVDDLLETIMLVAE--L-QELKANPHRNAKGTVIEAGL 678 (1018)
Q Consensus 613 -----rv~~eL~e~gl~~e------~~g~~vpiVeISAktGeGIdeLleaIl~lae--l-~~lk~~p~r~~~g~ViEs~~ 678 (1018)
++..+|.++++..+ .|+++++++++||++|+|+++|++.+..+++ + ..+..+++.++.++|++++.
T Consensus 163 ~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~~l~~~l~~~~~~~~~~~V~ev~~ 242 (586)
T PRK04004 163 EEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQRYLEERLKIDVEGPGKGTVLEVKE 242 (586)
T ss_pred HHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEEEE
Confidence 12345666676654 5678899999999999999999999875543 2 35677788999999999999
Q ss_pred ecCCCcEEEEEeEeeEEecCCEEEEcccee----EEEEEecc-----------CCCcccccCCCccEEEe--ccCCCCCC
Q 001745 679 HKSKGPVATFILQNGTLKKGDVVVCGEAFG----KVRALFDD-----------SGNRVDEAGPSIPVQII--GLNGVPIA 741 (1018)
Q Consensus 679 dkg~G~VatglV~~GtLkvGD~Vv~G~~~g----KVRaI~~~-----------~g~~V~eA~pg~~V~V~--Gl~~vP~a 741 (1018)
++|.|++++++|++|+|++||.|++++.++ +||+|+++ .++.+++|.|+++|.|. ||+++ .|
T Consensus 243 ~~g~G~v~~~~v~~GtL~~Gd~vv~~~~~~~i~~kVr~l~~~~~~~e~~~~~~~~~~~~~~~~~~~v~i~~~gl~~~-~~ 321 (586)
T PRK04004 243 ERGLGTTIDVILYDGTLRKGDTIVVGGKDGPIVTKVRALLKPRPLDEMRDPEDKFKPVDEVVAAAGVKISAPDLEDA-LA 321 (586)
T ss_pred eCCCceEEEEEEEcCEEECCCEEEECcCCCcceEEEEEEecCcchhhccccccccccccccCCCCceEEEeCCcccc-CC
Confidence 999999999999999999999999988764 99999987 46789999999999986 99998 99
Q ss_pred CCeEEEecChHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhHHHhhcCccCCCCcceeeEEEEcCCCccHHHHHHHHH
Q 001745 742 GDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGKVTLSSLASAVSAGKLSGLDLHQLNVIMKVDVQGSIEAVRQALQ 821 (1018)
Q Consensus 742 Gd~~~vv~~e~~Ar~~a~~r~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~vIiKaDv~GSlEAi~~~L~ 821 (1018)
|+.|.++.+++ ++++.+.. .+ + +. ++ .++.+++++|||||++||+|||.++|.
T Consensus 322 g~~~~v~~~~~-~~~~~~~~---~~-~-~~-----------~~----------~~~~~~~~vivkad~~Gs~EAi~~~l~ 374 (586)
T PRK04004 322 GSPLRVVRDED-VEEVKEEV---EE-E-IE-----------EI----------RIETDEEGVVVKADTLGSLEALVNELR 374 (586)
T ss_pred CCeEEEeCcHH-HHHHHHHH---HH-H-HH-----------hc----------cccccccCEEEEeCCccHHHHHHHHHH
Confidence 99999998843 33222111 11 1 10 00 012467999999999999999999999
Q ss_pred hCCCCCeEEEEEEcccCCCCHhhHHHHHhc------CCEEEEecCCCChhHHhHHHhcCceEEEechHhHHHHHHHHHHh
Q 001745 822 VLPQDNVTLKFLLQATGDISASDVDLAVAS------KAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAME 895 (1018)
Q Consensus 822 ~l~~~~v~i~ii~~~VG~ItesDV~lA~as------~aiIi~FnV~~~~~a~~~A~~~~V~I~~~~IIY~Liddik~~~~ 895 (1018)
++ .++|++++||+||++||++|.++ +|+||||||+++++|+++|+++||+|++|+|||||+|+++++|+
T Consensus 375 ~~-----~i~i~~~~vG~it~~Dv~lA~~~~~~~~~~a~Il~FnV~~~~~a~~~A~~~~V~I~~~~iIY~lid~~~~~~~ 449 (586)
T PRK04004 375 EE-----GIPIRKADVGDISKRDVIEASTVAEKDPLYGVILAFNVKVLPDAEEEAEKSDVKIFTGDVIYQLIEDYEKWVK 449 (586)
T ss_pred hC-----CCCEEEeccCCCCHHHHHHHHhhhccCCCceEEEEecCCCCHHHHHHHHHcCCeEEEeChHHHHHHHHHHHHH
Confidence 75 58899999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred ccccccee---eeeeEeEEEE----EEeecCCceEEEEEEeeeeEeeCCcEEEee-CCEEEEEEEEeeeecccccccccc
Q 001745 896 GLLETVEE---QVPIGSAEVR----AIFSSGSGRVAGCMVSEGKLVKGCGIRVIR-DGKTVHVGVLDSLRRVKENVKEVN 967 (1018)
Q Consensus 896 ~~l~~~~~---e~~~G~A~V~----~vF~~~~g~IaGc~V~~G~i~~~~~vrviR-~g~vi~~G~i~SLk~~k~dV~ev~ 967 (1018)
++++|..+ ++++|+|+|+ ++|+.+++.||||+|++|+|++|++ |+| +|+ +.|+|.||||+|+||+||+
T Consensus 450 ~~~~~~~~~~~~~~~g~a~v~il~~~vf~~~~~~IaGc~V~~G~i~~~~~--v~r~~g~--~iG~i~Slk~~k~~V~ev~ 525 (586)
T PRK04004 450 EQKEAEKEKILEKIVRPAKIRILPGYVFRQSDPAIVGVEVLGGTIKPGVP--LIKEDGK--RVGTIKQIQDQGENVKEAK 525 (586)
T ss_pred hhhcchhhhhhheeeceEEEEEccceeEecCCCeEEEEEEEeCEEecCCE--EEEECCE--EEEEEehhhccCCcccEeC
Confidence 99998755 5789999999 8999888999999999999999985 789 996 4599999999999999999
Q ss_pred cCceeEEEEccC---CCCCCCCEEEEEEEEEeehhHHHHHH
Q 001745 968 AGLECGVGAADY---DDLEEGDIIEAFNSIQRKRTLEEASA 1005 (1018)
Q Consensus 968 ~G~EcGi~i~~f---~d~~~GD~ie~y~~~~~~~~l~~~~~ 1005 (1018)
+|+||||.|++| +||++||+||||...+..++|++.-+
T Consensus 526 ~G~Ecgi~i~~~~~g~~~~~gD~i~~~~~~~~~~~l~~~~~ 566 (586)
T PRK04004 526 AGMEVAISIDGPTVGRQIKEGDILYVDIPEEHAKILEQELK 566 (586)
T ss_pred CCCEEEEEEecccccCCCCCCCEEEEEEEehhHHHHHHHHH
Confidence 999999999999 89999999999999999999997533
No 7
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=100.00 E-value=6.3e-85 Score=770.17 Aligned_cols=476 Identities=32% Similarity=0.513 Sum_probs=408.7
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCc--------------eecEEEEeCCCccc
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGK--------------LQPCVFLDTPGHEA 554 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk--------------~~~ItfIDTPGHE~ 554 (1018)
.|+|.|+||||+|||||||+++|++..+...+.+++|++++++.+....... ...++|||||||+.
T Consensus 2 ~r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~ 81 (590)
T TIGR00491 2 LRSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEA 81 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHh
Confidence 4889999999999999999999999988888889999999988876532111 12389999999999
Q ss_pred hHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCC-CC--------------hHHH-----
Q 001745 555 FGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDG-AN--------------PERV----- 614 (1018)
Q Consensus 555 F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~-a~--------------~erv----- 614 (1018)
|..++.+++..+|++|||||+++++++|+.+++.+++..++|+|+++||+|+.. +. ...+
T Consensus 82 f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~~ 161 (590)
T TIGR00491 82 FTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLD 161 (590)
T ss_pred HHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999953 11 1111
Q ss_pred ------HHHHHhcCCCCC------CCCCCCcEEEEecCCCCChHHHHHHHHHHHHH---hhhhcCCCCCCcceEEEEeee
Q 001745 615 ------MQELSSIGLMPE------DWGGDIPMVQISALKGEKVDDLLETIMLVAEL---QELKANPHRNAKGTVIEAGLH 679 (1018)
Q Consensus 615 ------~~eL~e~gl~~e------~~g~~vpiVeISAktGeGIdeLleaIl~lael---~~lk~~p~r~~~g~ViEs~~d 679 (1018)
..++.++++..+ .|+++++++++||++|+|+++|+++|..+++. ..++.+++.++.++|+|++.+
T Consensus 162 ~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~~l~~~l~~~~~~~~~~~V~e~~~~ 241 (590)
T TIGR00491 162 TKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQYLEEQLKLEEEGPARGTILEVKEE 241 (590)
T ss_pred HHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHHHhhhhhccCCCCCeEEEEEEEEEc
Confidence 234566777665 57788999999999999999999999765542 357778889999999999999
Q ss_pred cCCCcEEEEEeEeeEEecCCEEEEccce----eEEEEEeccCC-----------CcccccCCCccE--EEeccCCCCCCC
Q 001745 680 KSKGPVATFILQNGTLKKGDVVVCGEAF----GKVRALFDDSG-----------NRVDEAGPSIPV--QIIGLNGVPIAG 742 (1018)
Q Consensus 680 kg~G~VatglV~~GtLkvGD~Vv~G~~~----gKVRaI~~~~g-----------~~V~eA~pg~~V--~V~Gl~~vP~aG 742 (1018)
+|.|++++++|++|+|++||.|++|+.+ ++||+|+++++ ..++++.|+.++ .+.||++ |.||
T Consensus 242 ~G~G~v~t~~v~~G~l~~GD~iv~~~~~~~i~~kVr~l~~~~~l~e~r~~~~~~~~~~~~~~~~~~~v~~~~l~~-~~aG 320 (590)
T TIGR00491 242 TGLGMTIDAVIYDGILRKGDTIAMAGSDDVIVTRVRALLKPRPLEEMRESRKKFQKVDEVVAAAGVKIAAPGLDD-VMAG 320 (590)
T ss_pred CCCceEEEEEEEcCEEeCCCEEEEccCCCcccEEEEEecCCCccccccccccccCCcceecCCCceeEEecCCCC-CCCC
Confidence 9999999999999999999999998876 59999999863 567887776555 4579988 5999
Q ss_pred CeEEEecChH--HHHHHHHHHHHHHHHHHHhhhcCCCccchhhhHHHhhcCccCCCCcceeeEEEEcCCCccHHHHHHHH
Q 001745 743 DEFEVVDSLD--VAREKAEARAFSLRNERISAKAGDGKVTLSSLASAVSAGKLSGLDLHQLNVIMKVDVQGSIEAVRQAL 820 (1018)
Q Consensus 743 d~~~vv~~e~--~Ar~~a~~r~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~vIiKaDv~GSlEAi~~~L 820 (1018)
+.|.++++++ ++|+.+ .++ +. .++ ++.+++++|||||++||+|||.++|
T Consensus 321 ~~~~~~~~e~~~~~~~~~------~~~--~~------~~~---------------~~~~~~~vivkad~~Gs~EAl~~~l 371 (590)
T TIGR00491 321 SPIRVVTDEEIEKVKEEI------LKE--VE------EIK---------------IDTDEEGVVVKADTLGSLEALVNEL 371 (590)
T ss_pred CEEEEcCcHHHHHHHHHH------HHH--hh------hcc---------------cccccccEEEEecCcchHHHHHHHH
Confidence 9998887764 222111 111 00 011 1246799999999999999999999
Q ss_pred HhCCCCCeEEEEEEcccCCCCHhhHHHHHhcC------CEEEEecCCCChhHHhHHHhcCceEEEechHhHHHHHHHHHH
Q 001745 821 QVLPQDNVTLKFLLQATGDISASDVDLAVASK------AIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAM 894 (1018)
Q Consensus 821 ~~l~~~~v~i~ii~~~VG~ItesDV~lA~as~------aiIi~FnV~~~~~a~~~A~~~~V~I~~~~IIY~Liddik~~~ 894 (1018)
.++. ++|++++||+||++||++|++++ |+||||||+++++|+++|+++||+|++|+|||||+|+++++|
T Consensus 372 ~~~~-----i~i~~~~vG~it~~Dv~~A~~~~~~~~~~a~Il~Fnv~~~~~a~~~A~~~~v~i~~~~iIY~l~d~~~~~~ 446 (590)
T TIGR00491 372 RDMG-----VPIKKADIGDVSKRDVVEAGIAKQEDRVYGAIIAFNVKVLPGAEQELKKYDIKLFSDNIIYRLMEEFEEWI 446 (590)
T ss_pred HhCC-----CcEEEecCCCCcHhHHHHHhhcccCCCCceEEEEecCCCCHHHHHHHHHcCCEEEEeCcHHHHHHHHHHHH
Confidence 9774 78999999999999999999985 999999999999999999999999999999999999999999
Q ss_pred hccccccee---eeeeEeEEEE----EEeecCCceEEEEEEeeeeEeeCCcEEEee-CCEEEEEEEEeeeeccccccccc
Q 001745 895 EGLLETVEE---QVPIGSAEVR----AIFSSGSGRVAGCMVSEGKLVKGCGIRVIR-DGKTVHVGVLDSLRRVKENVKEV 966 (1018)
Q Consensus 895 ~~~l~~~~~---e~~~G~A~V~----~vF~~~~g~IaGc~V~~G~i~~~~~vrviR-~g~vi~~G~i~SLk~~k~dV~ev 966 (1018)
+++++|.++ |.++|+|+|+ ++|+.++|.||||+|++|+|++|++ |+| +|++| |+|.||||+|+||+||
T Consensus 447 ~~~~~~~~~~~~~~~~~~a~v~il~~~vf~~~~~~i~G~~V~~G~i~~~~~--v~r~~~~~i--G~i~slk~~k~~V~ev 522 (590)
T TIGR00491 447 EGIEEEKKRKWMEAIIKPAKIRLIPKLVFRQSKPAIVGVEVLTGVIRQGYP--LMKDDGETV--GTVRSMQDKGENVKSA 522 (590)
T ss_pred HhhhcchhhhhcceeEEEEEEEEeeheeeeCCCCeEEEEEEecCEEecCCe--EEecCCEEE--EEEchhcccCccccEE
Confidence 999999876 7789999999 9999888999999999999999986 677 56654 9999999999999999
Q ss_pred ccCceeEEEEccC---CCCCCCCEEEEEEEEEeehhHHHH
Q 001745 967 NAGLECGVGAADY---DDLEEGDIIEAFNSIQRKRTLEEA 1003 (1018)
Q Consensus 967 ~~G~EcGi~i~~f---~d~~~GD~ie~y~~~~~~~~l~~~ 1003 (1018)
++|+||||+|++| ++|++||+|++.-..+..+.|++.
T Consensus 523 ~~G~Ecgi~i~~~~~g~~~~~gD~l~~~i~~~~~~~l~~~ 562 (590)
T TIGR00491 523 SAGQEVAIAIKDVVYGRTIHEGDTLYVDVPENHYHILKEQ 562 (590)
T ss_pred CCCCEEEEEEeCccccCCCCCCCEEEEeCCHHHHHHHHHH
Confidence 9999999999999 899999999999888777777654
No 8
>PRK14845 translation initiation factor IF-2; Provisional
Probab=100.00 E-value=3e-79 Score=751.01 Aligned_cols=537 Identities=31% Similarity=0.485 Sum_probs=434.3
Q ss_pred CCHHHHHHHHHhCCCccccc-ccCCHHHHHHHH-HhcCCceeecChhhhHHhhhhcccCChhhhhcc---------CCCC
Q 001745 423 IGEGEILGSLYSKGIKPEGV-QTLDKDMVKMIC-KDYEVEVLDADPVKMEEMARKKDLFDEEDLDKL---------EDRP 491 (1018)
Q Consensus 423 ~~~~~iik~L~~~G~~~~in-~~Ld~e~~~lla-~E~g~~v~~~~~~~~e~l~~~~~~~~ee~~~~l---------~~r~ 491 (1018)
++...-++.|-.-|++.+.+ ..|..+.++... .||+.+-. .-+.++++...+..-++.+.+ ....
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (1049)
T PRK14845 387 IRDHNYLKAFESDGLIKDGKLTELGRELLEVWRNREFDSKDV----DYIRNLIENLVFVPVEDVEEIEYDGYVYDLTTET 462 (1049)
T ss_pred cchhHHHHHhhhccccccCccchHHHHHHHHHhccccChhhH----HHHHHHhhceEEEeeccceeeccCCeEEEEEecc
Confidence 44455566677777775543 345666555443 44444311 112222222111111222221 1122
Q ss_pred CEE---EEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCc--------------eecEEEEeCCCccc
Q 001745 492 PVL---TIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGK--------------LQPCVFLDTPGHEA 554 (1018)
Q Consensus 492 pkV---aImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk--------------~~~ItfIDTPGHE~ 554 (1018)
.+. +|++| |||||++|+++++..++++||||||+++.+++....+ ...++|||||||+.
T Consensus 463 ~~~~~~~~~~~----KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~ 538 (1049)
T PRK14845 463 HNFIANGILVH----NTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEA 538 (1049)
T ss_pred Ccceeeeeecc----cccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHH
Confidence 222 45554 9999999999999999999999999999988752111 12389999999999
Q ss_pred hHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCC-CCCh--------------HHH-----
Q 001745 555 FGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKD-GANP--------------ERV----- 614 (1018)
Q Consensus 555 F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~-~a~~--------------erv----- 614 (1018)
|..++.+++..+|+++||+|+++++++|+.+++..++..++|+|+|+||+|+. +++. +++
T Consensus 539 F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~ 618 (1049)
T PRK14845 539 FTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELE 618 (1049)
T ss_pred HHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999994 4431 222
Q ss_pred ------HHHHHhcCCCC------CCCCCCCcEEEEecCCCCChHHHHHHHHHHHHH---hhhhcCCCCCCcceEEEEeee
Q 001745 615 ------MQELSSIGLMP------EDWGGDIPMVQISALKGEKVDDLLETIMLVAEL---QELKANPHRNAKGTVIEAGLH 679 (1018)
Q Consensus 615 ------~~eL~e~gl~~------e~~g~~vpiVeISAktGeGIdeLleaIl~lael---~~lk~~p~r~~~g~ViEs~~d 679 (1018)
..+|.++|+.. ++|++.+++|++||++|+||++|+++|..+++. ..+..+++.++.|+|+|++.+
T Consensus 619 ~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~~~l~~~L~~~~~~~~~g~VlEv~~~ 698 (1049)
T PRK14845 619 IKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQKYLEERLKLNVEGYAKGTILEVKEE 698 (1049)
T ss_pred HHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhHHhhhhhhccCCCCceEEEEEEEEEe
Confidence 22345666654 357889999999999999999999998876652 356777888999999999999
Q ss_pred cCCCcEEEEEeEeeEEecCCEEEEccc----eeEEEEEecc-----------CCCcccccCCCccEEEe--ccCCCCCCC
Q 001745 680 KSKGPVATFILQNGTLKKGDVVVCGEA----FGKVRALFDD-----------SGNRVDEAGPSIPVQII--GLNGVPIAG 742 (1018)
Q Consensus 680 kg~G~VatglV~~GtLkvGD~Vv~G~~----~gKVRaI~~~-----------~g~~V~eA~pg~~V~V~--Gl~~vP~aG 742 (1018)
+|.|++++++|++|+|++||.|++|+. +++||+|+++ +++.+++|.|+++|.|. ||+++ .||
T Consensus 699 kG~G~vvt~iv~~G~Lk~GD~iv~g~~~~~i~~kVRaLl~p~pl~e~r~~~~~~~~~~~~~~a~~vki~a~gl~~~-~aG 777 (1049)
T PRK14845 699 KGLGTTIDAIIYDGTLRRGDTIVVGGPDDVIVTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAGVKIAAPGLEEV-LAG 777 (1049)
T ss_pred cCceeEEEEEEEcCEEecCCEEEEccCCCcceEEEEEecCcccccccccccccccccccccCCCceEEecCCcccc-CCC
Confidence 999999999999999999999999876 8999999964 25679999999999996 99997 999
Q ss_pred CeEEEecChHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhHHHhhcCccCCCCcceeeEEEEcCCCccHHHHHHHHHh
Q 001745 743 DEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGKVTLSSLASAVSAGKLSGLDLHQLNVIMKVDVQGSIEAVRQALQV 822 (1018)
Q Consensus 743 d~~~vv~~e~~Ar~~a~~r~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~vIiKaDv~GSlEAi~~~L~~ 822 (1018)
+.|.++.+++++++..+.. .++ +. .. .++.+.+++|||||++||+|||.++|.+
T Consensus 778 ~~~~v~~~e~~~~~~~~~~---~~~--~~-----------~~----------~~~~~~~~vivKaDt~GSlEAl~~~L~~ 831 (1049)
T PRK14845 778 SPIRIVPTKEKIEKAKEEV---MKE--VE-----------EA----------KIETDKEGILIKADTLGSLEALANELRK 831 (1049)
T ss_pred CeEEEeCCHHHHHHHHHHH---HHH--Hh-----------hh----------ccCcceeeEEEEecccchHHHHHHHHHh
Confidence 9999999999886532211 111 00 00 0134679999999999999999999997
Q ss_pred CCCCCeEEEEEEcccCCCCHhhHHHHHh------cCCEEEEecCCCChhHHhHHHhcCceEEEechHhHHHHHHHHHHhc
Q 001745 823 LPQDNVTLKFLLQATGDISASDVDLAVA------SKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEG 896 (1018)
Q Consensus 823 l~~~~v~i~ii~~~VG~ItesDV~lA~a------s~aiIi~FnV~~~~~a~~~A~~~~V~I~~~~IIY~Liddik~~~~~ 896 (1018)
+ .++|++++||+||++||++|++ ++|+||||||+++++|+++|+++||+|++|+|||+|||+++++|++
T Consensus 832 ~-----~i~i~~~~vG~it~~DV~~A~~~~~~~~~~a~Il~FnV~v~~~a~~~A~~~~V~I~~~~IIY~Lid~~~~~~~~ 906 (1049)
T PRK14845 832 A-----GIPIKKAEVGDITKKDVIEALSYKQENPLYGVILGFNVKVLPEAQEEAEKYGVKIFVDNIIYKLVEDYTEWVKE 906 (1049)
T ss_pred C-----CCCEEEeeCCCCCHHHHHHHHhhhccCCCCcEEEEecCCCCHHHHHHHHHcCCeEEEeChHHHHHHHHHHHHHh
Confidence 6 3789999999999999999999 5899999999999999999999999999999999999999999999
Q ss_pred ccccceee---eeeEeEEEE----EEeecCCceEEEEEEeeeeEeeCCcEEEee-CCEEEEEEEEeeeeccccccccccc
Q 001745 897 LLETVEEQ---VPIGSAEVR----AIFSSGSGRVAGCMVSEGKLVKGCGIRVIR-DGKTVHVGVLDSLRRVKENVKEVNA 968 (1018)
Q Consensus 897 ~l~~~~~e---~~~G~A~V~----~vF~~~~g~IaGc~V~~G~i~~~~~vrviR-~g~vi~~G~i~SLk~~k~dV~ev~~ 968 (1018)
+++|..+| .++|+|+|+ +||+.++|.||||+|++|+|++|+ +|+| +|.+| |+|.||||+|+||+||++
T Consensus 907 ~~~~~~~~~~~~~~~p~~v~ilp~~vF~~~~~~IaG~~V~~G~i~~~~--~l~r~~~~~i--G~i~Slk~~k~~V~ev~~ 982 (1049)
T PRK14845 907 EEEKKKRELFEKLIKPGIIRLLPDCIFRRSNPAIVGVEVLEGTLRVGV--TLIKEDGMKV--GTVRSIKDRGENVKEAKA 982 (1049)
T ss_pred hhchhhhhhhhcccCceEEEeccceEEeCCCCeEEEEEEeeCEEecCc--EEEecCCEEE--EEEchHhccCccccEeCC
Confidence 99998654 589999999 999988899999999999999997 5778 55543 999999999999999999
Q ss_pred CceeEEEEccC---CCCCCCCEEEEEEEEEeehhHHHH
Q 001745 969 GLECGVGAADY---DDLEEGDIIEAFNSIQRKRTLEEA 1003 (1018)
Q Consensus 969 G~EcGi~i~~f---~d~~~GD~ie~y~~~~~~~~l~~~ 1003 (1018)
|+||||+|++| ++|++||+|+++-..+..+.|++.
T Consensus 983 G~ecgI~i~~~~~gr~~~~gD~l~~~i~~~~~~~l~~~ 1020 (1049)
T PRK14845 983 GKAVAIAIEGAILGRHVDEGETLYVDVPESHVRELYHK 1020 (1049)
T ss_pred CCEEEEEEecccccCCCCCCCEEEEecCHHHHHHHHHH
Confidence 99999999998 499999999999999988888643
No 9
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3e-61 Score=554.00 Aligned_cols=487 Identities=31% Similarity=0.424 Sum_probs=402.4
Q ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEec----------C----CceecEEEEeCCCcc
Q 001745 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPV----------D----GKLQPCVFLDTPGHE 553 (1018)
Q Consensus 488 ~~r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~----------d----gk~~~ItfIDTPGHE 553 (1018)
.-|.|++|||||+|.|||-||+.|+++++..++++||||.|++..++... + .+-..+.+||||||+
T Consensus 472 ~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE 551 (1064)
T KOG1144|consen 472 NLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE 551 (1064)
T ss_pred hcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch
Confidence 34889999999999999999999999999999999999999988877531 0 122358999999999
Q ss_pred chHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCC-CCC----------------------
Q 001745 554 AFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKD-GAN---------------------- 610 (1018)
Q Consensus 554 ~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~-~a~---------------------- 610 (1018)
.|+.+|.||...||++|||+|+.+|+.+||+|.+++++..+.||||++||+|.. +|.
T Consensus 552 sFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~EF 631 (1064)
T KOG1144|consen 552 SFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNEF 631 (1064)
T ss_pred hhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999973 221
Q ss_pred ---hHHHHHHHHhcCCCCCCC------CCCCcEEEEecCCCCChHHHHHHHHHHHHHhh-hhcCCCCCCcceEEEEeeec
Q 001745 611 ---PERVMQELSSIGLMPEDW------GGDIPMVQISALKGEKVDDLLETIMLVAELQE-LKANPHRNAKGTVIEAGLHK 680 (1018)
Q Consensus 611 ---~erv~~eL~e~gl~~e~~------g~~vpiVeISAktGeGIdeLleaIl~lael~~-lk~~p~r~~~g~ViEs~~dk 680 (1018)
...++.++.+.|++...| +..+.++|+||.+|+||.+|+-+|+.+++-.- -+-.......++|+|+....
T Consensus 632 ~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~kl~y~~ev~cTVlEVKvie 711 (1064)
T KOG1144|consen 632 KERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEKLAYVDEVQCTVLEVKVIE 711 (1064)
T ss_pred HHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHHHhhhhheeeEEEEEEeec
Confidence 123445566667665543 34578999999999999999999987765321 12223456789999999999
Q ss_pred CCCcEEEEEeEeeEEecCCEEEE----ccceeEEEEEeccCC----------CcccccCCCccEEEe--ccCCCCCCCCe
Q 001745 681 SKGPVATFILQNGTLKKGDVVVC----GEAFGKVRALFDDSG----------NRVDEAGPSIPVQII--GLNGVPIAGDE 744 (1018)
Q Consensus 681 g~G~VatglV~~GtLkvGD~Vv~----G~~~gKVRaI~~~~g----------~~V~eA~pg~~V~V~--Gl~~vP~aGd~ 744 (1018)
|.|+.+.+++.+|+|+.||.|++ |+....||+|+..+. ...+++.+.+.|.|+ ||... +||..
T Consensus 712 G~GtTIDViLvNG~L~eGD~IvvcG~~GpIvTtIRaLLtP~PlkElRVk~~Y~hhkEvkaA~GiKI~A~~LEka-iaG~~ 790 (1064)
T KOG1144|consen 712 GHGTTIDVILVNGELHEGDQIVVCGLQGPIVTTIRALLTPQPLKELRVKGTYVHHKEVKAAQGIKIAAKDLEKA-IAGTR 790 (1064)
T ss_pred CCCceEEEEEEcceeccCCEEEEcCCCCchhHHHHHhcCCcchHhhccccceeehhHhhhhccchhhhcchHHH-hcCCe
Confidence 99999999999999999998765 566778888887631 124566666666665 77766 89999
Q ss_pred EEEecChHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhHHHhhcCccCCCCcceeeEEEEcCCCccHHHHHHHHHhCC
Q 001745 745 FEVVDSLDVAREKAEARAFSLRNERISAKAGDGKVTLSSLASAVSAGKLSGLDLHQLNVIMKVDVQGSIEAVRQALQVLP 824 (1018)
Q Consensus 745 ~~vv~~e~~Ar~~a~~r~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~vIiKaDv~GSlEAi~~~L~~l~ 824 (1018)
++++.-+++...+.+...+. |+++++.+ +....+|.|.|.+.||||||.++|..
T Consensus 791 l~VvgpeDd~e~lk~~~m~d----------------l~~~l~~I--------d~sgeGv~vqastlgslealleflk~-- 844 (1064)
T KOG1144|consen 791 LLVVGPEDDIEELKEEAMED----------------LESVLSRI--------DKSGEGVYVQASTLGSLEALLEFLKT-- 844 (1064)
T ss_pred eEEeCCcccHHHHHHHHHHH----------------HHHHHHHh--------hccCCceEEEecccchHHHHHHHHhh--
Confidence 99996665543332222111 22333322 34567899999999999999999994
Q ss_pred CCCeEEEEEEcccCCCCHhhHHHHHh------cCCEEEEecCCCChhHHhHHHhcCceEEEechHhHHHHHHHHHHhccc
Q 001745 825 QDNVTLKFLLQATGDISASDVDLAVA------SKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLL 898 (1018)
Q Consensus 825 ~~~v~i~ii~~~VG~ItesDV~lA~a------s~aiIi~FnV~~~~~a~~~A~~~~V~I~~~~IIY~Liddik~~~~~~l 898 (1018)
++|.|...++|+|...||+.|.+ -+|+||||.|++..+|+.+|.++||+||..+|||||+|.+.+|.++++
T Consensus 845 ---~kIPv~gi~IGPVhKKDvmka~~MlEk~kEyA~iLaFDVkv~~eA~e~Ad~~gVkIF~adiIYhLfD~f~~y~e~~k 921 (1064)
T KOG1144|consen 845 ---VKIPVSGIGIGPVHKKDVMKASVMLEKKKEYATILAFDVKVEREARELADEMGVKIFCADIIYHLFDAFTKYIEEIK 921 (1064)
T ss_pred ---cCcccccccccccchHHHHHHHHHHhhccceeEEEEEeeEeeHHHHHHHHhhCceeeehhHHHHHHHHHHHHHHHHH
Confidence 67778889999999999999997 479999999999999999999999999999999999999999999998
Q ss_pred ccceeee---eeEeEEEE----EEeecCCceEEEEEEeeeeEeeCCcEEEeeCCEEEEEEEEeeeecccccccccccCce
Q 001745 899 ETVEEQV---PIGSAEVR----AIFSSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLE 971 (1018)
Q Consensus 899 ~~~~~e~---~~G~A~V~----~vF~~~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~i~SLk~~k~dV~ev~~G~E 971 (1018)
+...++. .+.+|.++ +||+...|.|.|+.|.+|.+++|+++||.. -+.|+.|.|.||.++++.|.++++|+|
T Consensus 922 e~kkke~~~~AvFPc~L~ilpn~ifN~RdPiv~GV~V~~GilkiGTPiCv~~-r~~~~lG~v~Sie~Nh~~vd~akkGqe 1000 (1064)
T KOG1144|consen 922 EEKKKESADEAVFPCVLQILPNCIFNKRDPIVLGVDVEEGILKIGTPICVPK-REFIDLGRVASIENNHKPVDYAKKGQE 1000 (1064)
T ss_pred HHHHhhccCceeeeeehhhhhHhhccCCCCeEEEEEeecCeeecCCceEEec-cceeeeeeeeeecccCcccchhhcCCe
Confidence 8776663 45666654 699999999999999999999999999996 556899999999999999999999999
Q ss_pred eEEEEcc---------CCCCCCCCEEEEEEEEEeehhHHHHHH
Q 001745 972 CGVGAAD---------YDDLEEGDIIEAFNSIQRKRTLEEASA 1005 (1018)
Q Consensus 972 cGi~i~~---------f~d~~~GD~ie~y~~~~~~~~l~~~~~ 1005 (1018)
+.|.|++ .+.|-..|++++....+....|+.+-+
T Consensus 1001 VaiKie~~~~e~~~mfGRHf~~~D~LyS~isR~SId~lK~~fr 1043 (1064)
T KOG1144|consen 1001 VAIKIEASNGEEQKMFGRHFDMEDILYSHISRRSIDILKKAFR 1043 (1064)
T ss_pred EEEEEecCCCCCcchhhcccCccchHHHHhhHhhHHHHHHHHH
Confidence 9999997 368999999999888887777775543
No 10
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.97 E-value=9e-30 Score=302.62 Aligned_cols=230 Identities=26% Similarity=0.335 Sum_probs=190.5
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcC---cccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKT---KVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~---~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADi 568 (1018)
.+|+++||+|||||||+++|++. .+......|+|+++++..+.+ .+ ..++|||||||+.|..++..++..+|+
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~--~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~ 76 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPL--PD--YRLGFIDVPGHEKFISNAIAGGGGIDA 76 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEe--CC--EEEEEEECCCHHHHHHHHHhhhccCCE
Confidence 37999999999999999999863 344455679999988777654 22 689999999999999999999999999
Q ss_pred EEEEEecCCCCChhHHHHHHHHHHcCCC-EEEEEecCCCCCCCh-HHHHHHHH----hcCCCCCCCCCCCcEEEEecCCC
Q 001745 569 AVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGANP-ERVMQELS----SIGLMPEDWGGDIPMVQISALKG 642 (1018)
Q Consensus 569 VILVVDAddGv~~QT~E~I~~ak~~gIP-IIVVINKiDL~~a~~-erv~~eL~----e~gl~~e~~g~~vpiVeISAktG 642 (1018)
+|||||+++++++|+.+++..+...++| +|||+||+|+.+... +.+..++. ..++ ...+++|++||++|
T Consensus 77 aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~-----~~~~~ii~vSA~tG 151 (581)
T TIGR00475 77 ALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIF-----LKNAKIFKTSAKTG 151 (581)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCC-----CCCCcEEEEeCCCC
Confidence 9999999999999999999999999999 999999999964321 11222222 2222 12478999999999
Q ss_pred CChHHHHHHHHHHHHHhhhhcCCCCCCcceEEEEeeecCCCcEEEEEeEeeEEecCCEEEEcc--ceeEEEEEeccCCCc
Q 001745 643 EKVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE--AFGKVRALFDDSGNR 720 (1018)
Q Consensus 643 eGIdeLleaIl~lael~~lk~~p~r~~~g~ViEs~~dkg~G~VatglV~~GtLkvGD~Vv~G~--~~gKVRaI~~~~g~~ 720 (1018)
+||++++++|..+.+..... ..+.++...|.+++..+|.|+|++|.|.+|++++||.|.+++ ...+||+|+.+ ++.
T Consensus 152 ~GI~eL~~~L~~l~~~~~~~-~~~~p~r~~Id~~f~v~G~GtVv~G~v~~G~i~~Gd~l~i~P~~~~~~Vr~iq~~-~~~ 229 (581)
T TIGR00475 152 QGIGELKKELKNLLESLDIK-RIQKPLRMAIDRAFKVKGAGTVVTGTAFSGEVKVGDNLRLLPINHEVRVKAIQAQ-NQD 229 (581)
T ss_pred CCchhHHHHHHHHHHhCCCc-CcCCCcEEEEEEEEecCCcEEEEEEEEecceEecCCEEEECCCCceEEEeEEEEC-Ccc
Confidence 99999999987665443222 245678888999998999999999999999999999999976 47899999987 789
Q ss_pred ccccCCCccEEE
Q 001745 721 VDEAGPSIPVQI 732 (1018)
Q Consensus 721 V~eA~pg~~V~V 732 (1018)
+++|.||+.|.|
T Consensus 230 v~~a~aG~rval 241 (581)
T TIGR00475 230 VEIAYAGQRIAL 241 (581)
T ss_pred CCEEECCCEEEE
Confidence 999999999986
No 11
>PRK10218 GTP-binding protein; Provisional
Probab=99.97 E-value=7.1e-29 Score=295.32 Aligned_cols=421 Identities=22% Similarity=0.241 Sum_probs=290.8
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCc--ccc--------------cccCCceeeeeeEEEEEecCCceecEEEEeCCCc
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKTK--VAA--------------AEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH 552 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~~--v~~--------------~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGH 552 (1018)
.+..+|+|+||+|||||||+++|.... +.. ....|+|....... +.++++.++|||||||
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~----i~~~~~~inliDTPG~ 78 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTA----IKWNDYRINIVDTPGH 78 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEE----EecCCEEEEEEECCCc
Confidence 356789999999999999999998622 111 12345554433222 3346688999999999
Q ss_pred cchHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHhcC--CCCCCCCC
Q 001745 553 EAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIG--LMPEDWGG 630 (1018)
Q Consensus 553 E~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e~g--l~~e~~g~ 630 (1018)
..|...+.++++.+|++|||||+.++.+.|+..++..+...++|+|+++||+|+..++.+++..++..+- +.......
T Consensus 79 ~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~ 158 (607)
T PRK10218 79 ADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQL 158 (607)
T ss_pred chhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCcccccc
Confidence 9999999999999999999999999999999999999999999999999999998888777766655531 11111223
Q ss_pred CCcEEEEecCCCC----------ChHHHHHHHHHHHHHhhhhcCCCCCCcceEEEEeeecCCCcEEEEEeEeeEEecCCE
Q 001745 631 DIPMVQISALKGE----------KVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDV 700 (1018)
Q Consensus 631 ~vpiVeISAktGe----------GIdeLleaIl~lael~~lk~~p~r~~~g~ViEs~~dkg~G~VatglV~~GtLkvGD~ 700 (1018)
++|++++||++|. |+..|++.|.... ..+..+++.++.+.|..+..+++.|++++++|.+|+|+.||.
T Consensus 159 ~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i--P~P~~~~~~Pl~~~V~k~~~d~~~G~i~~gRV~sG~lk~Gd~ 236 (607)
T PRK10218 159 DFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV--PAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQ 236 (607)
T ss_pred CCCEEEeEhhcCcccCCccccccchHHHHHHHHHhC--CCCCCCCCCCeEEEEEeeEecCCCcEEEEEEEEeCcCcCCCE
Confidence 5899999999998 5888888876432 223334567889999999999999999999999999999999
Q ss_pred EEEccc-----eeEEEEEeccC---CCcccccCCCccEEEeccCCCCCCCCeEEEecChHHHHHHHHHHHHHHHHHHHhh
Q 001745 701 VVCGEA-----FGKVRALFDDS---GNRVDEAGPSIPVQIIGLNGVPIAGDEFEVVDSLDVAREKAEARAFSLRNERISA 772 (1018)
Q Consensus 701 Vv~G~~-----~gKVRaI~~~~---g~~V~eA~pg~~V~V~Gl~~vP~aGd~~~vv~~e~~Ar~~a~~r~~~~~~~~i~~ 772 (1018)
|++.+. ..+|..|+... ...+++|.||+.|.|.|++++ ..||.+.-..+
T Consensus 237 v~~~~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~-~~GdTl~~~~~---------------------- 293 (607)
T PRK10218 237 VTIIDSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGEL-NISDTVCDTQN---------------------- 293 (607)
T ss_pred EEEecCCCcEeeEEEEEEEEEecCCceECCEEcCCCEEEEECcccc-ccCcEEecCCC----------------------
Confidence 987432 46787776554 456899999999999999987 79998742211
Q ss_pred hcCCCccchhhhHHHhhcCccCCCCcceeeEEEEcCC---CccHHHH------HHHHHhCCCCCeEEEEEEcccCCCCHh
Q 001745 773 KAGDGKVTLSSLASAVSAGKLSGLDLHQLNVIMKVDV---QGSIEAV------RQALQVLPQDNVTLKFLLQATGDISAS 843 (1018)
Q Consensus 773 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~vIiKaDv---~GSlEAi------~~~L~~l~~~~v~i~ii~~~VG~Ites 843 (1018)
...|. ...+..+.+.+.+.+.. .|.-..+ .+.|.++-.+++.++|-...
T Consensus 294 -----~~~l~----------~~~~~~P~~~~~~~~~~sp~~g~e~k~~t~~~~~~rL~~~~~~D~sl~v~~~~------- 351 (607)
T PRK10218 294 -----VEALP----------ALSVDEPTVSMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETE------- 351 (607)
T ss_pred -----cccCC----------CCCCCCCeEEEEEEeCCCccccchhhhhhHHHHHHHHHHhhCCCCeEEEEEcC-------
Confidence 00011 01123456677776555 4544443 44555555578888876532
Q ss_pred hHHHHHhcCCEEEEecCCCC-hhHHhHHHhcCceEEEe--chHhHHHHHHHHHHhcccccceeeeeeEeEEEEEEe----
Q 001745 844 DVDLAVASKAIILGFNVKAP-GSVKTYADNKGVEIRLY--RVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIF---- 916 (1018)
Q Consensus 844 DV~lA~as~aiIi~FnV~~~-~~a~~~A~~~~V~I~~~--~IIY~Liddik~~~~~~l~~~~~e~~~G~A~V~~vF---- 916 (1018)
.++..++++-=... .-+.+..+++|+++... .|+|+-.+ - ..++|..+=.+ .|.+-|
T Consensus 352 ------~~~~~~v~g~GelHL~il~e~lrreg~e~~~~~P~V~yret~-g-----~klEPi~~v~i----~vP~e~~G~V 415 (607)
T PRK10218 352 ------DADAFRVSGRGELHLSVLIENMRREGFELAVSRPKVIFREID-G-----RKQEPYENVTL----DVEEQHQGSV 415 (607)
T ss_pred ------CCCeEEEEEEcHHHHHHHHHHHHhCCceEEEeCCEEEEEEEC-C-----EEeCCeEEEEE----EechhhHHHH
Confidence 12344444432111 11223333448887766 78888431 1 13444333222 222222
Q ss_pred ----ecCCceEEEEEEeeeeEeeCCcEEEeeCCEEEEEEEEeeeecccccccccccCc-eeEEEEccCCCCCCCCE
Q 001745 917 ----SSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGL-ECGVGAADYDDLEEGDI 987 (1018)
Q Consensus 917 ----~~~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~i~SLk~~k~dV~ev~~G~-EcGi~i~~f~d~~~GD~ 987 (1018)
....|.+.|+.-..+ ...+ +.|.--...|-.|..+......|. -+-..|.+|..+..||+
T Consensus 416 ~~~l~~RrG~~~~m~~~~~-----~~~~------l~~~vP~~~l~~y~~~l~s~T~G~g~~~~~f~~Y~~~~~g~~ 480 (607)
T PRK10218 416 MQALGERKGDLKNMNPDGK-----GRVR------LDYVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHYDDVRPGEV 480 (607)
T ss_pred HHHHHhcCCEEeccEECCC-----CEEE------EEEEcCHHHHhhHHHHhhhhCCCeEEEEEEecCccCCCCCCC
Confidence 235788988875321 1122 235556678888999999999998 56778888988888885
No 12
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.97 E-value=1e-28 Score=293.79 Aligned_cols=416 Identities=24% Similarity=0.281 Sum_probs=280.1
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCc--cc--------------ccccCCceeeeeeEEEEEecCCceecEEEEeCCCccch
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTK--VA--------------AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAF 555 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~--v~--------------~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F 555 (1018)
.+|+|+||+|||||||+++|+... +. .....|+|+......+. ++++.|+|||||||.+|
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~----~~~~kinlIDTPGh~DF 77 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIR----YNGTKINIVDTPGHADF 77 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEE----ECCEEEEEEECCCHHHH
Confidence 579999999999999999998521 11 12245777665444433 35678999999999999
Q ss_pred HHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHh----cCCCCCCCCCC
Q 001745 556 GAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSS----IGLMPEDWGGD 631 (1018)
Q Consensus 556 ~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e----~gl~~e~~g~~ 631 (1018)
...+.++++.+|++|||||+.++.++|+.+++..+...++|+|||+||+|+...+.+++..++.. .+...+. ..
T Consensus 78 ~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~--l~ 155 (594)
T TIGR01394 78 GGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQ--LD 155 (594)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhcccccc--cc
Confidence 99999999999999999999999999999999999999999999999999987766665554433 2222121 24
Q ss_pred CcEEEEecCCCC----------ChHHHHHHHHHHHHHhhhhcCCCCCCcceEEEEeeecCCCcEEEEEeEeeEEecCCEE
Q 001745 632 IPMVQISALKGE----------KVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVV 701 (1018)
Q Consensus 632 vpiVeISAktGe----------GIdeLleaIl~lael~~lk~~p~r~~~g~ViEs~~dkg~G~VatglV~~GtLkvGD~V 701 (1018)
+|++++||++|. |+..||+.|.... .....+++.++.+.|..+..+++.|.+++++|.+|+|++||.|
T Consensus 156 ~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l--P~P~~~~~~pl~~~V~~i~~d~~~Grv~~gRV~sG~lk~G~~V 233 (594)
T TIGR01394 156 FPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHV--PAPKGDLDEPLQMLVTNLDYDEYLGRIAIGRVHRGTVKKGQQV 233 (594)
T ss_pred CcEEechhhcCcccccCcccccCHHHHHHHHHHhC--CCCCCCCCCCEEEEEEEEEeeCCCceEEEEEEEeCEEccCCEE
Confidence 789999999996 7999999987542 3333456778899999999999999999999999999999999
Q ss_pred EEccc-----eeEEEEEeccCC---CcccccCCCccEEEeccCCCCCCCCeEEEecChHHHHHHHHHHHHHHHHHHHhhh
Q 001745 702 VCGEA-----FGKVRALFDDSG---NRVDEAGPSIPVQIIGLNGVPIAGDEFEVVDSLDVAREKAEARAFSLRNERISAK 773 (1018)
Q Consensus 702 v~G~~-----~gKVRaI~~~~g---~~V~eA~pg~~V~V~Gl~~vP~aGd~~~vv~~e~~Ar~~a~~r~~~~~~~~i~~~ 773 (1018)
.+.+. ..+|++|+...| ..+++|.||+.|.|.|++++ ..||.+.-..+.
T Consensus 234 ~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~gl~~i-~~Gdtl~~~~~~---------------------- 290 (594)
T TIGR01394 234 ALMKRDGTIENGRISKLLGFEGLERVEIDEAGAGDIVAVAGLEDI-NIGETIADPEVP---------------------- 290 (594)
T ss_pred EEecCCCceeEEEEEEEEEccCCCceECCEECCCCEEEEeCCccc-CCCCEEeCCCcc----------------------
Confidence 88653 468999987644 56999999999999999987 689987532110
Q ss_pred cCCCccchhhhHHHhhcCccCCCCcceeeEEEEcCCC---ccHH------HHHHHHHhCCCCCeEEEEEEcccCCCCHhh
Q 001745 774 AGDGKVTLSSLASAVSAGKLSGLDLHQLNVIMKVDVQ---GSIE------AVRQALQVLPQDNVTLKFLLQATGDISASD 844 (1018)
Q Consensus 774 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~vIiKaDv~---GSlE------Ai~~~L~~l~~~~v~i~ii~~~VG~ItesD 844 (1018)
..|.. ..+..+.+.+.+.+... |.-+ .|.++|.++..+++.++|-...-
T Consensus 291 -----~~l~~----------~~~~~P~~~~~~~~~~~p~~~~e~k~~t~~~l~~~L~k~~~~d~sl~v~~~~~------- 348 (594)
T TIGR01394 291 -----EALPT----------ITVDEPTLSMTFSVNDSPLAGKEGKKVTSRHIRDRLMRELETNVALRVEDTES------- 348 (594)
T ss_pred -----ccCCC----------CCCCCCeEEEEEEecCCCcccccchhhhHHHHHHHHHHhhccCCeEEEEEecC-------
Confidence 01110 01234567777776433 4433 48999999988899998865421
Q ss_pred HHHHHhcCCEEEEe-cCCCChhHHhHHHhcCceEEEe--chHhHHHHHHHHHHhcccccceeeeeeEeEE----EEEEee
Q 001745 845 VDLAVASKAIILGF-NVKAPGSVKTYADNKGVEIRLY--RVIYDLIDDMRNAMEGLLETVEEQVPIGSAE----VRAIFS 917 (1018)
Q Consensus 845 V~lA~as~aiIi~F-nV~~~~~a~~~A~~~~V~I~~~--~IIY~Liddik~~~~~~l~~~~~e~~~G~A~----V~~vF~ 917 (1018)
++.+++++ +---..-+.+..+++|+++... .|+|+-++ -.+|+|..+=.+.=+.+ |-.-+.
T Consensus 349 ------~~~~~v~g~GelHL~il~e~lrreg~e~~~~~P~V~yrei~------g~llEPi~~~~i~vp~e~~G~v~~~l~ 416 (594)
T TIGR01394 349 ------ADKFEVSGRGELHLSILIETMRREGFELQVGRPQVIYKEID------GKKLEPIEELTIDVPEEHVGAVIEKLG 416 (594)
T ss_pred ------CCeEEEEEECHHHHHHHHHHHhccCceEEEeCCEEEEEeCC------CeEECCEEEEEEEechHHHHHHHHHHH
Confidence 12344433 2111111223333448777655 78887432 24555544332211110 001122
Q ss_pred cCCceEEEEEEeeeeEeeCCcEEEeeCCEEEEEEEEeeeecccccccccccCc-eeEEEEccCCCCC
Q 001745 918 SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGL-ECGVGAADYDDLE 983 (1018)
Q Consensus 918 ~~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~i~SLk~~k~dV~ev~~G~-EcGi~i~~f~d~~ 983 (1018)
...|.+.|+.-..+ ...+ +.|.--...|-.|..+...+..|. .+-..|.+|..+.
T Consensus 417 ~RrG~~~~~~~~~~-----~~~~------i~~~vP~~~l~~y~~~l~s~T~G~g~~~~~f~~Y~~~~ 472 (594)
T TIGR01394 417 KRKGEMVDMEPSGN-----GRTR------LEFKIPSRGLIGFRTEFLTDTRGTGIMNHVFDEYEPWK 472 (594)
T ss_pred HhCCEEeccEECCC-----CEEE------EEEEeChHHhhhHHHHHHhhcCCeEEEEEEeccceeCC
Confidence 34677777764321 1111 123344455566666666666665 3444455555444
No 13
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.97 E-value=6.3e-29 Score=296.72 Aligned_cols=245 Identities=27% Similarity=0.344 Sum_probs=192.8
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcC---cccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKT---KVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~---~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADi 568 (1018)
.+|+++||+|||||||+++|++. ++......|+|+++++..+... .+..++|||||||+.|...+..++..+|+
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~---~g~~i~~IDtPGhe~fi~~m~~g~~~~D~ 77 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQP---DGRVLGFIDVPGHEKFLSNMLAGVGGIDH 77 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecC---CCcEEEEEECCCHHHHHHHHHHHhhcCCE
Confidence 36899999999999999999863 3444456799999887665432 23468999999999999999999999999
Q ss_pred EEEEEecCCCCChhHHHHHHHHHHcCCC-EEEEEecCCCCCC-ChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCChH
Q 001745 569 AVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGA-NPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVD 646 (1018)
Q Consensus 569 VILVVDAddGv~~QT~E~I~~ak~~gIP-IIVVINKiDL~~a-~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGeGId 646 (1018)
++||||+++++++||.+++..+...++| +|||+||+|+.+. ..+.+..++...- ........++|++||++|+||+
T Consensus 78 ~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l--~~~~~~~~~ii~VSA~tG~gI~ 155 (614)
T PRK10512 78 ALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVL--REYGFAEAKLFVTAATEGRGID 155 (614)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHH--HhcCCCCCcEEEEeCCCCCCCH
Confidence 9999999999999999999999989998 6899999999642 1222333333210 0000124789999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCcceEEEEeeecCCCcEEEEEeEeeEEecCCEEEEcc--ceeEEEEEeccCCCccccc
Q 001745 647 DLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE--AFGKVRALFDDSGNRVDEA 724 (1018)
Q Consensus 647 eLleaIl~lael~~lk~~p~r~~~g~ViEs~~dkg~G~VatglV~~GtLkvGD~Vv~G~--~~gKVRaI~~~~g~~V~eA 724 (1018)
+|+++|..+.. .....+.++...|.+++..+|.|+|++|+|.+|+|++||.|.+.+ ...+||+|+.+ ++.+++|
T Consensus 156 ~L~~~L~~~~~---~~~~~~~~~rl~Id~vf~v~G~GtVvtGtv~sG~l~~Gd~v~i~p~~~~~~VrsIq~~-~~~v~~a 231 (614)
T PRK10512 156 ALREHLLQLPE---REHAAQHRFRLAIDRAFTVKGAGLVVTGTALSGEVKVGDTLWLTGVNKPMRVRGLHAQ-NQPTEQA 231 (614)
T ss_pred HHHHHHHHhhc---cccCcCCCceEEEEEEeccCCCeEEEEEEEecceEecCCEEEEcCCCCcEEEEEEecC-CcCCCEE
Confidence 99999975432 222355678888999999999999999999999999999998854 46899999988 6899999
Q ss_pred CCCccEEEe--c-cC--CCCCCCCeEE
Q 001745 725 GPSIPVQII--G-LN--GVPIAGDEFE 746 (1018)
Q Consensus 725 ~pg~~V~V~--G-l~--~vP~aGd~~~ 746 (1018)
.||+.|.+. | ++ ++ ..|+.+.
T Consensus 232 ~aG~rval~l~g~~~~~~i-~rGdvl~ 257 (614)
T PRK10512 232 QAGQRIALNIAGDAEKEQI-NRGDWLL 257 (614)
T ss_pred eCCCeEEEEecCCCChhhC-CCcCEEe
Confidence 999999763 4 32 22 5676654
No 14
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.96 E-value=1.6e-27 Score=283.95 Aligned_cols=452 Identities=22% Similarity=0.272 Sum_probs=302.6
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCccc---------------ccccCCceeeeeeEEEEEec-CCceecEEEEeCCCcc
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA---------------AAEAGGITQGIGAYKVQVPV-DGKLQPCVFLDTPGHE 553 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v~---------------~~e~gGiTqdIga~~V~i~~-dgk~~~ItfIDTPGHE 553 (1018)
+..+|+|+||+|||||||+++|...... .....|+|.......+.+.. ++..+.++|||||||+
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~ 81 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 81 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH
Confidence 3468999999999999999999853211 11234677654443433321 4556889999999999
Q ss_pred chHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHhc-CCCCCCCCCCC
Q 001745 554 AFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-GLMPEDWGGDI 632 (1018)
Q Consensus 554 ~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e~-gl~~e~~g~~v 632 (1018)
.|..++.+++..+|++|||||++++.+.|+.+.+..+...++|+|+++||+|+...+.+++..++... ++. ..
T Consensus 82 dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~------~~ 155 (595)
T TIGR01393 82 DFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKKEIEEVIGLD------AS 155 (595)
T ss_pred HHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCHHHHHHHHHHHhCCC------cc
Confidence 99999999999999999999999999999999888887889999999999999766666555555442 221 12
Q ss_pred cEEEEecCCCCChHHHHHHHHHHHHHhhhhcCCCCCCcceEEEEeeecCCCcEEEEEeEeeEEecCCEEEEcc--ceeEE
Q 001745 633 PMVQISALKGEKVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE--AFGKV 710 (1018)
Q Consensus 633 piVeISAktGeGIdeLleaIl~lael~~lk~~p~r~~~g~ViEs~~dkg~G~VatglV~~GtLkvGD~Vv~G~--~~gKV 710 (1018)
.++++||++|.||++||++|... +..+..+++.++.+.|+++..++++|.+++++|.+|+|+.||.|.+.+ ...+|
T Consensus 156 ~vi~vSAktG~GI~~Lle~I~~~--lp~p~~~~~~pl~~~V~~~~~d~~~G~v~~~rV~sG~lk~Gd~v~~~~~~~~~~v 233 (595)
T TIGR01393 156 EAILASAKTGIGIEEILEAIVKR--VPPPKGDPDAPLKALIFDSHYDNYRGVVALVRVFEGTIKPGDKIRFMSTGKEYEV 233 (595)
T ss_pred eEEEeeccCCCCHHHHHHHHHHh--CCCCCCCCCCCeEEEEEEEEEeCCCcEEEEEEEECCEEecCCEEEEecCCCeeEE
Confidence 58999999999999999999753 334445567889999999999999999999999999999999998743 35677
Q ss_pred EEEeccCC--CcccccCCCccEEEe-ccC---CCCCCCCeEEEecChHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhh
Q 001745 711 RALFDDSG--NRVDEAGPSIPVQII-GLN---GVPIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGKVTLSSL 784 (1018)
Q Consensus 711 RaI~~~~g--~~V~eA~pg~~V~V~-Gl~---~vP~aGd~~~vv~~e~~Ar~~a~~r~~~~~~~~i~~~~~~~~~~l~~~ 784 (1018)
..|....+ .+++++.||+.+.+. |++ ++ ..||.+....+. + ...+..
T Consensus 234 ~~i~~~~~~~~~v~~~~aGdIg~i~~~~~~~~~~-~~Gdtl~~~~~~--~-----------------------~~~l~~- 286 (595)
T TIGR01393 234 DEVGVFTPKLTKTDELSAGEVGYIIAGIKDVSDV-RVGDTITHVKNP--A-----------------------KEPLPG- 286 (595)
T ss_pred eEEEEecCCceECCEEcCCCEEEEeccccccCcc-CCCCEEECCCCc--c-----------------------ccCCCC-
Confidence 77765433 557899999976664 553 44 578887532210 0 000100
Q ss_pred HHHhhcCccCCCCcceeeEEEEcCCCccHHHHHHHHHhCCCCCeEEEEEEcccCCCCHhhHHHHHhcCCEEEEecCCCCh
Q 001745 785 ASAVSAGKLSGLDLHQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPG 864 (1018)
Q Consensus 785 ~~~~~~~~~~~~~~~~l~vIiKaDv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG~ItesDV~lA~as~aiIi~FnV~~~~ 864 (1018)
. ....+.+..-+.+...+..+.|.++|.+|..++..+.+-.. .+.+++.||-+.-..
T Consensus 287 --------~-~~~~P~v~~~i~p~~~~d~~kL~~aL~kL~~eD~sl~~~~e--------------~~~~l~~g~r~g~lG 343 (595)
T TIGR01393 287 --------F-KEVKPMVFAGLYPIDTEDYEDLRDALEKLKLNDASLTYEPE--------------SSPALGFGFRCGFLG 343 (595)
T ss_pred --------C-cCCCcEEEEEEEECCcccHHHHHHHHHHHhccCCeEEEEec--------------CCcccccccEEeeee
Confidence 0 01235677788889999999999999999999999886421 223333343332111
Q ss_pred ------hHHhHHHhcCceEEEe--chHhHHH--H-------HHH-----HHHhcccccceeeeeeEeEE----EEEEeec
Q 001745 865 ------SVKTYADNKGVEIRLY--RVIYDLI--D-------DMR-----NAMEGLLETVEEQVPIGSAE----VRAIFSS 918 (1018)
Q Consensus 865 ------~a~~~A~~~~V~I~~~--~IIY~Li--d-------dik-----~~~~~~l~~~~~e~~~G~A~----V~~vF~~ 918 (1018)
-..++.++.|+++... +|+|+.. + +-. ..+..+|+|..+=.++=+.+ |......
T Consensus 344 ~lHlei~~erL~re~~~~v~~~~P~V~Yreti~~g~~~~~~~p~~~p~~~~~~~llEP~~~~~i~~P~~~~G~vm~~~~~ 423 (595)
T TIGR01393 344 LLHMEIIQERLEREFNLDLITTAPSVIYRVYLTNGEVIEVDNPSDLPDPGKIEHVEEPYVKATIITPTEYLGPIMTLCQE 423 (595)
T ss_pred HHHHHHHHHHHHHHhCCeeEEecCEEEEEEEecCCcEEEEECcccCCCcccccceeCCeEEEEEEccHHHHHHHHHHHHH
Confidence 1234455567777655 6777641 0 000 01122333332222111110 0011223
Q ss_pred CCceEEEEEEeeeeEeeCCcEEEeeCCEEEEEEEEeee-ecccccccccccCc-eeEEEEccCCCCCCC-----------
Q 001745 919 GSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSL-RRVKENVKEVNAGL-ECGVGAADYDDLEEG----------- 985 (1018)
Q Consensus 919 ~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~i~SL-k~~k~dV~ev~~G~-EcGi~i~~f~d~~~G----------- 985 (1018)
..|.+.|+...++ ..+ .+.|.--++.| ..|-++.+.+..|+ .+-.. |..+++.
T Consensus 424 rRG~~~~~~~~~~-----~~~------~i~~~~Plae~~~~~~~~Lks~T~G~gs~~~~---~~~Y~~~~~~~~~~~~n~ 489 (595)
T TIGR01393 424 KRGVQTNMEYLDP-----NRV------ELIYEMPLAEIVYDFFDKLKSISRGYASFDYE---LIGYRPSDLVKLDILING 489 (595)
T ss_pred cCCEEeCcEEcCC-----CeE------EEEEEeccchhhhchhHHhhhhcCCEEEEEEE---ECCccccceEEEEEEECC
Confidence 5688888775432 111 13577788896 99999999999998 23333 4555554
Q ss_pred CEEEEEEEEEeehhHHHHHHHHHHhhhh
Q 001745 986 DIIEAFNSIQRKRTLEEASASMASALEG 1013 (1018)
Q Consensus 986 D~ie~y~~~~~~~~l~~~~~~~~~~~~~ 1013 (1018)
+.+.++...--+..-....+.+...|++
T Consensus 490 ~~~d~l~~~~~~~~~~~~~~~~~~~l~~ 517 (595)
T TIGR01393 490 EPVDALSFIVHRDKAYSRGREICEKLKE 517 (595)
T ss_pred cccceeEEeeeHHHHHHHHHHHHHHHHh
Confidence 4455666555555555566666666554
No 15
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.96 E-value=1.4e-28 Score=282.22 Aligned_cols=231 Identities=31% Similarity=0.456 Sum_probs=182.5
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCccc-------------------------------ccccCCceeeeeeEEEEEecC
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA-------------------------------AAEAGGITQGIGAYKVQVPVD 538 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v~-------------------------------~~e~gGiTqdIga~~V~i~~d 538 (1018)
...+|+++||+|||||||+++|+..... ....+|+|+++....+.
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~---- 80 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFE---- 80 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEe----
Confidence 4568999999999999999999732211 12257899998776554
Q ss_pred CceecEEEEeCCCccchHHHHHhhhccCCEEEEEEecCC--CCChhHHHHHHHHHHcCCC-EEEEEecCCCCCCChHH--
Q 001745 539 GKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADD--GIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGANPER-- 613 (1018)
Q Consensus 539 gk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVILVVDAdd--Gv~~QT~E~I~~ak~~gIP-IIVVINKiDL~~a~~er-- 613 (1018)
.+++.++|||||||+.|...+..++..+|++|||+|+++ ++.+++.+++..+...++| +|+++||+|+..++.++
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~ 160 (425)
T PRK12317 81 TDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYE 160 (425)
T ss_pred cCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHH
Confidence 355789999999999999888888999999999999999 9999999999998888874 99999999997644332
Q ss_pred -HHHHH----HhcCCCCCCCCCCCcEEEEecCCCCChHH------------HHHHHHHHHHHhhhhcCCCCCCcceEEEE
Q 001745 614 -VMQEL----SSIGLMPEDWGGDIPMVQISALKGEKVDD------------LLETIMLVAELQELKANPHRNAKGTVIEA 676 (1018)
Q Consensus 614 -v~~eL----~e~gl~~e~~g~~vpiVeISAktGeGIde------------LleaIl~lael~~lk~~p~r~~~g~ViEs 676 (1018)
+..++ ...++.. ..++++++||++|+||++ |+++|.. +.......+.++...|.++
T Consensus 161 ~~~~~i~~~l~~~g~~~----~~~~ii~iSA~~g~gi~~~~~~~~wy~g~~L~~~l~~---~~~~~~~~~~p~r~~i~~~ 233 (425)
T PRK12317 161 EVKEEVSKLLKMVGYKP----DDIPFIPVSAFEGDNVVKKSENMPWYNGPTLLEALDN---LKPPEKPTDKPLRIPIQDV 233 (425)
T ss_pred HHHHHHHHHHHhhCCCc----CcceEEEeecccCCCccccccCCCcccHHHHHHHHhc---CCCCccccCCCcEEEEEEE
Confidence 22232 2233321 136899999999999987 4444422 1112223456788899999
Q ss_pred eeecCCCcEEEEEeEeeEEecCCEEEEcc--ceeEEEEEeccCCCcccccCCCccEEE
Q 001745 677 GLHKSKGPVATFILQNGTLKKGDVVVCGE--AFGKVRALFDDSGNRVDEAGPSIPVQI 732 (1018)
Q Consensus 677 ~~dkg~G~VatglV~~GtLkvGD~Vv~G~--~~gKVRaI~~~~g~~V~eA~pg~~V~V 732 (1018)
+..+|.|+|++|+|.+|+|++||.|.+++ ..++|++|+.+ ++.++.|.||+.|.+
T Consensus 234 ~~~~g~G~vv~G~v~~G~v~~Gd~v~i~P~~~~~~VksI~~~-~~~~~~a~aG~~v~i 290 (425)
T PRK12317 234 YSISGVGTVPVGRVETGVLKVGDKVVFMPAGVVGEVKSIEMH-HEELPQAEPGDNIGF 290 (425)
T ss_pred EeeCCCeEEEEEEEeeccEecCCEEEECCCCCeEEEEEEEEC-CcccCEECCCCeEEE
Confidence 99999999999999999999999999975 47899999987 688999999999975
No 16
>PRK12736 elongation factor Tu; Reviewed
Probab=99.96 E-value=4.6e-28 Score=276.02 Aligned_cols=234 Identities=29% Similarity=0.341 Sum_probs=183.4
Q ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHcCc----------------ccccccCCceeeeeeEEEEEecCCceecEEEEeCCC
Q 001745 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTK----------------VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG 551 (1018)
Q Consensus 488 ~~r~pkVaImGhvdvGKTTLLnrL~~~~----------------v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPG 551 (1018)
.+...+|+++||+|||||||+++|++.. .......|+|++.....+ ......++||||||
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~----~~~~~~i~~iDtPG 84 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEY----ETEKRHYAHVDCPG 84 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEe----cCCCcEEEEEECCC
Confidence 4456789999999999999999997521 012236788988654332 33456799999999
Q ss_pred ccchHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCC-EEEEEecCCCCCCC-h-H----HHHHHHHhcCCC
Q 001745 552 HEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGAN-P-E----RVMQELSSIGLM 624 (1018)
Q Consensus 552 HE~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIP-IIVVINKiDL~~a~-~-e----rv~~eL~e~gl~ 624 (1018)
|+.|...+.+++..+|+++||+|+++++++|+.+++..+...++| +|+++||+|+.... . + ++...+...++.
T Consensus 85 h~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~ 164 (394)
T PRK12736 85 HADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFP 164 (394)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999 78999999996321 1 1 122222333332
Q ss_pred CCCCCCCCcEEEEecCCCC--------ChHHHHHHHHHHHHHhhhhcCCCCCCcceEEEEeeecCCCcEEEEEeEeeEEe
Q 001745 625 PEDWGGDIPMVQISALKGE--------KVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLK 696 (1018)
Q Consensus 625 ~e~~g~~vpiVeISAktGe--------GIdeLleaIl~lael~~lk~~p~r~~~g~ViEs~~dkg~G~VatglV~~GtLk 696 (1018)
...++++++||++|. ++++|++.|.... .....+.+.++...|.+++..++.|+|++|+|.+|+|+
T Consensus 165 ----~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l--p~~~~~~~~p~r~~I~~~~~~~g~G~Vv~G~v~~G~l~ 238 (394)
T PRK12736 165 ----GDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI--PTPERDTDKPFLMPVEDVFTITGRGTVVTGRVERGTVK 238 (394)
T ss_pred ----cCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC--CCCCCCCCCCeEEEEEEEEecCCcEEEEEEEEeecEEe
Confidence 124799999999983 5777877776432 12233445678889999999999999999999999999
Q ss_pred cCCEEEEcc----ceeEEEEEeccCCCcccccCCCccEEE
Q 001745 697 KGDVVVCGE----AFGKVRALFDDSGNRVDEAGPSIPVQI 732 (1018)
Q Consensus 697 vGD~Vv~G~----~~gKVRaI~~~~g~~V~eA~pg~~V~V 732 (1018)
+||.|++.+ ...+|++|+.+ ++.+++|.||+.|.+
T Consensus 239 ~gd~v~i~p~~~~~~~~V~sI~~~-~~~~~~a~aGd~v~l 277 (394)
T PRK12736 239 VGDEVEIVGIKETQKTVVTGVEMF-RKLLDEGQAGDNVGV 277 (394)
T ss_pred cCCEEEEecCCCCeEEEEEEEEEC-CEEccEECCCCEEEE
Confidence 999998743 35899999987 789999999999965
No 17
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.96 E-value=3.7e-27 Score=281.13 Aligned_cols=451 Identities=23% Similarity=0.275 Sum_probs=304.9
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCccc---------------ccccCCceeeeeeEEEEEe-cCCceecEEEEeCCCcc
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA---------------AAEAGGITQGIGAYKVQVP-VDGKLQPCVFLDTPGHE 553 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v~---------------~~e~gGiTqdIga~~V~i~-~dgk~~~ItfIDTPGHE 553 (1018)
+..+|+|+||+|||||||+++|+..... .....|+|.......+.+. .++..+.++|||||||.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 5679999999999999999999753111 1224577765544444332 14567889999999999
Q ss_pred chHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHhc-CCCCCCCCCCC
Q 001745 554 AFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-GLMPEDWGGDI 632 (1018)
Q Consensus 554 ~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e~-gl~~e~~g~~v 632 (1018)
.|...+.+++..+|++|||||+++++..|+.+.+..+...++|+|+|+||+|+..++.+++..++... ++. ..
T Consensus 86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~------~~ 159 (600)
T PRK05433 86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDVIGID------AS 159 (600)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHHHHhCCC------cc
Confidence 99999999999999999999999999999999998888889999999999999776666665555442 221 12
Q ss_pred cEEEEecCCCCChHHHHHHHHHHHHHhhhhcCCCCCCcceEEEEeeecCCCcEEEEEeEeeEEecCCEEEEcc--ceeEE
Q 001745 633 PMVQISALKGEKVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE--AFGKV 710 (1018)
Q Consensus 633 piVeISAktGeGIdeLleaIl~lael~~lk~~p~r~~~g~ViEs~~dkg~G~VatglV~~GtLkvGD~Vv~G~--~~gKV 710 (1018)
.++++||++|.||++|+++|.... ..+..+++.++.+.|+++..++++|.+++++|.+|+|+.||.|.+.+ ...+|
T Consensus 160 ~vi~iSAktG~GI~~Ll~~I~~~l--p~P~~~~~~pl~~~Vfd~~~d~~~G~v~~~rV~sG~Lk~Gd~i~~~~~~~~~~V 237 (600)
T PRK05433 160 DAVLVSAKTGIGIEEVLEAIVERI--PPPKGDPDAPLKALIFDSWYDNYRGVVVLVRVVDGTLKKGDKIKMMSTGKEYEV 237 (600)
T ss_pred eEEEEecCCCCCHHHHHHHHHHhC--ccccCCCCCCceEEEEEEEecCCCceEEEEEEEcCEEecCCEEEEecCCceEEE
Confidence 489999999999999999997543 33344567788999999999999999999999999999999998754 34577
Q ss_pred EEEecc--CCCcccccCCCccEEEe-cc---CCCCCCCCeEEEecChHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhh
Q 001745 711 RALFDD--SGNRVDEAGPSIPVQII-GL---NGVPIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGKVTLSSL 784 (1018)
Q Consensus 711 RaI~~~--~g~~V~eA~pg~~V~V~-Gl---~~vP~aGd~~~vv~~e~~Ar~~a~~r~~~~~~~~i~~~~~~~~~~l~~~ 784 (1018)
..|... +..+++++.||+.+.+. |+ +++ ..||.+....+. + ...+..
T Consensus 238 ~~i~~~~~~~~~v~~~~aGdIg~i~~~ik~~~~~-~~Gdtl~~~~~~--~-----------------------~~~l~~- 290 (600)
T PRK05433 238 DEVGVFTPKMVPVDELSAGEVGYIIAGIKDVRDA-RVGDTITLAKNP--A-----------------------EEPLPG- 290 (600)
T ss_pred EEeeccCCCceECcEEcCCCEEEEeccccccccc-CCCCEEECCCCc--c-----------------------ccCCCC-
Confidence 777654 34568999999977665 54 344 588887543211 0 000100
Q ss_pred HHHhhcCccCCCCcceeeEEEEcCCCccHHHHHHHHHhCCCCCeEEEEEEcccCCCCHhhHHHHHhcCCEEEEecCCCCh
Q 001745 785 ASAVSAGKLSGLDLHQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPG 864 (1018)
Q Consensus 785 ~~~~~~~~~~~~~~~~l~vIiKaDv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG~ItesDV~lA~as~aiIi~FnV~~~~ 864 (1018)
. ....+.+..-+.+...+..+.|.++|.+|..++..+.+-. .++.+++.||-+.-..
T Consensus 291 --------~-~~~~P~v~~~i~p~~~~d~~kL~~aL~kL~~eD~sl~~~~--------------e~~~~l~~g~r~gf~G 347 (600)
T PRK05433 291 --------F-KEVKPMVFAGLYPVDSDDYEDLRDALEKLQLNDASLTYEP--------------ETSQALGFGFRCGFLG 347 (600)
T ss_pred --------C-CCCCcEEEEEEEECCccCHHHHHHHHHHHHHhCCeEEEEe--------------cCCcceecceEeecHH
Confidence 0 0123566677888889999999999999998899987641 1233444444444322
Q ss_pred h------HHhHHHhcCceEEEe--chHhHHH---------HHHH-----HHHhcccccceeeeeeEeEE----EEEEeec
Q 001745 865 S------VKTYADNKGVEIRLY--RVIYDLI---------DDMR-----NAMEGLLETVEEQVPIGSAE----VRAIFSS 918 (1018)
Q Consensus 865 ~------a~~~A~~~~V~I~~~--~IIY~Li---------ddik-----~~~~~~l~~~~~e~~~G~A~----V~~vF~~ 918 (1018)
. ..++.++.|+++..- +|+|+.. ++-. ..+..+|+|..+=.++=+.+ |......
T Consensus 348 ~lHlev~~erL~~e~~~~v~~~~P~V~Yreti~~g~~~~~~~p~~~pds~~~~~llEP~~~~~i~~P~~~~G~vm~~~~~ 427 (600)
T PRK05433 348 LLHMEIIQERLEREFDLDLITTAPSVVYEVTLTDGEVIEVDNPSKLPDPGKIEEIEEPIVKATIIVPQEYVGAVMELCQE 427 (600)
T ss_pred HHHHHHHHHHHHHhhCceEEEecCEEEEEEEEeCCcEEEEECcccCCCccccceEECCEEEEEEEecHHHHHHHHHHHHH
Confidence 1 233455568777655 6777641 1000 01123344433222211110 0011223
Q ss_pred CCceEEEEEEeeeeEeeCCcEEEeeCCEEEEEEEEeee-ecccccccccccCc-eeEEEEccCCCCCCCC----------
Q 001745 919 GSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSL-RRVKENVKEVNAGL-ECGVGAADYDDLEEGD---------- 986 (1018)
Q Consensus 919 ~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~i~SL-k~~k~dV~ev~~G~-EcGi~i~~f~d~~~GD---------- 986 (1018)
..|.+.|+.-.++ .+ .+.|.--++.| ..|-++.+.+..|+ .+-.. |..+++.|
T Consensus 428 rRG~~~~~~~~~~------~~------~i~~~~Pl~e~~~~~~~~Lks~T~G~gs~~~~---~~~Y~~~~~~~~~~~~n~ 492 (600)
T PRK05433 428 KRGVQKDMEYLGN------RV------ELTYELPLAEIVFDFFDRLKSVSRGYASLDYE---FIGYRESDLVKLDILING 492 (600)
T ss_pred cCCEEeCcEecCC------eE------EEEEEechHHhhhhHHHHhHhhcCCEEEEEEE---ECCcccccEEEEEEEECC
Confidence 5788888875332 11 14577788999 99999999999998 33333 45555554
Q ss_pred -EEEEEEEEEeehhHHHHHHHHHHhhhh
Q 001745 987 -IIEAFNSIQRKRTLEEASASMASALEG 1013 (1018)
Q Consensus 987 -~ie~y~~~~~~~~l~~~~~~~~~~~~~ 1013 (1018)
.+.++...--+..-....+.+...|++
T Consensus 493 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 520 (600)
T PRK05433 493 EPVDALSFIVHRDKAYERGRALVEKLKE 520 (600)
T ss_pred cccceeEEeeeHHHHHHHHHHHHHHHHh
Confidence 445555554444455555666555543
No 18
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.96 E-value=2.5e-28 Score=282.70 Aligned_cols=238 Identities=25% Similarity=0.325 Sum_probs=184.1
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcC---cccccccCCceeeeeeEEEEE-------------ecCCc--------------
Q 001745 491 PPVLTIMGHVDHGKTTLLDHIRKT---KVAAAEAGGITQGIGAYKVQV-------------PVDGK-------------- 540 (1018)
Q Consensus 491 ~pkVaImGhvdvGKTTLLnrL~~~---~v~~~e~gGiTqdIga~~V~i-------------~~dgk-------------- 540 (1018)
..+|+++||+|||||||+.+|+.. +...+...|+|+++++..... .+...
T Consensus 34 ~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (460)
T PTZ00327 34 TINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHKM 113 (460)
T ss_pred cEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccccc
Confidence 457999999999999999999964 334566789999998765421 01000
Q ss_pred --eecEEEEeCCCccchHHHHHhhhccCCEEEEEEecCCC-CChhHHHHHHHHHHcCCC-EEEEEecCCCCCCC-hHHHH
Q 001745 541 --LQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDG-IRPQTNEAIAHAKAAGVP-IVIAINKIDKDGAN-PERVM 615 (1018)
Q Consensus 541 --~~~ItfIDTPGHE~F~~~r~rg~~~ADiVILVVDAddG-v~~QT~E~I~~ak~~gIP-IIVVINKiDL~~a~-~erv~ 615 (1018)
...++|+|||||+.|...+..++..+|+++||+|++++ +++||.+++..+...+++ +|+|+||+|+.... .++..
T Consensus 114 ~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~~~~~~~~~ 193 (460)
T PTZ00327 114 TLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVKEAQAQDQY 193 (460)
T ss_pred cccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccCHHHHHHHH
Confidence 24699999999999999999999999999999999996 799999999999888886 89999999996421 22233
Q ss_pred HHHHhcCCCCCCCCCCCcEEEEecCCCCChHHHHHHHHHHHHHhhhhcCCCCCCcceEEEEeeec--------CCCcEEE
Q 001745 616 QELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHK--------SKGPVAT 687 (1018)
Q Consensus 616 ~eL~e~gl~~e~~g~~vpiVeISAktGeGIdeLleaIl~lael~~lk~~p~r~~~g~ViEs~~dk--------g~G~Vat 687 (1018)
.++..+- ...+...+++|++||++|.||+.|++.|.... .....+.+.++...|.+++... ++|+|++
T Consensus 194 ~ei~~~l--~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l--p~~~r~~~~p~r~~Idr~F~V~~~g~~~~~~~GtVv~ 269 (460)
T PTZ00327 194 EEIRNFV--KGTIADNAPIIPISAQLKYNIDVVLEYICTQI--PIPKRDLTSPPRMIVIRSFDVNKPGEDIENLKGGVAG 269 (460)
T ss_pred HHHHHHH--HhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC--CCCCCCCCCCcEEEEEEEEeecccCCcccCCceEEEE
Confidence 3333310 01122468999999999999999999987422 2222233456777777776443 3799999
Q ss_pred EEeEeeEEecCCEEEEccc---------------eeEEEEEeccCCCcccccCCCccEEEe
Q 001745 688 FILQNGTLKKGDVVVCGEA---------------FGKVRALFDDSGNRVDEAGPSIPVQII 733 (1018)
Q Consensus 688 glV~~GtLkvGD~Vv~G~~---------------~gKVRaI~~~~g~~V~eA~pg~~V~V~ 733 (1018)
|.|.+|+|++||.|.+++. .++|++|+.+ ++.+++|.||+.|.|.
T Consensus 270 G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~VksI~~~-~~~v~~a~aG~~vai~ 329 (460)
T PTZ00327 270 GSILQGVLKVGDEIEIRPGIISKDSGGEFTCRPIRTRIVSLFAE-NNELQYAVPGGLIGVG 329 (460)
T ss_pred EEEeeceEecCCEEEEccCcccccccCccccccceEEEEEEEEC-CeECCEEcCCCEEEEE
Confidence 9999999999999999763 4699999987 7899999999998774
No 19
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.96 E-value=3.3e-28 Score=281.26 Aligned_cols=231 Identities=27% Similarity=0.380 Sum_probs=183.7
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCc-------------------------------ccccccCCceeeeeeEEEEEecC
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTK-------------------------------VAAAEAGGITQGIGAYKVQVPVD 538 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~-------------------------------v~~~e~gGiTqdIga~~V~i~~d 538 (1018)
...+|+++||+|||||||+.+|+... ...+...|+|+++.++.+.
T Consensus 6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~---- 81 (446)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE---- 81 (446)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEc----
Confidence 44679999999999999999986411 0122356889888766543
Q ss_pred CceecEEEEeCCCccchHHHHHhhhccCCEEEEEEecCCCC-------ChhHHHHHHHHHHcCCC-EEEEEecCCCC--C
Q 001745 539 GKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGI-------RPQTNEAIAHAKAAGVP-IVIAINKIDKD--G 608 (1018)
Q Consensus 539 gk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVILVVDAddGv-------~~QT~E~I~~ak~~gIP-IIVVINKiDL~--~ 608 (1018)
..++.++|+|||||++|...+..++..+|++|||+|+++|+ .+||.+++..+...++| +||++||||+. +
T Consensus 82 ~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~ 161 (446)
T PTZ00141 82 TPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVN 161 (446)
T ss_pred cCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccch
Confidence 35678999999999999999999999999999999999997 48999999999999998 78999999953 3
Q ss_pred CCh---HHHHHHHHh----cCCCCCCCCCCCcEEEEecCCCCChHH------------HHHHHHHHHHHhhhhcCCCCCC
Q 001745 609 ANP---ERVMQELSS----IGLMPEDWGGDIPMVQISALKGEKVDD------------LLETIMLVAELQELKANPHRNA 669 (1018)
Q Consensus 609 a~~---erv~~eL~e----~gl~~e~~g~~vpiVeISAktGeGIde------------LleaIl~lael~~lk~~p~r~~ 669 (1018)
++. +++..++.. .++.. .+++||++||++|+|+.+ |+++|..+ .......+.++
T Consensus 162 ~~~~~~~~i~~~i~~~l~~~g~~~----~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l~~~---~~~~~~~~~p~ 234 (446)
T PTZ00141 162 YSQERYDEIKKEVSAYLKKVGYNP----EKVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEALDTL---EPPKRPVDKPL 234 (446)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCc----ccceEEEeecccCCCcccCCCCCcccchHHHHHHHhCC---CCCCcCCCCCe
Confidence 333 333444333 33322 258999999999999964 66666432 11222345678
Q ss_pred cceEEEEeeecCCCcEEEEEeEeeEEecCCEEEEccc--eeEEEEEeccCCCcccccCCCccEEE
Q 001745 670 KGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEA--FGKVRALFDDSGNRVDEAGPSIPVQI 732 (1018)
Q Consensus 670 ~g~ViEs~~dkg~G~VatglV~~GtLkvGD~Vv~G~~--~gKVRaI~~~~g~~V~eA~pg~~V~V 732 (1018)
...|.+++..+|.|++++|+|.+|+|++||.|++.+. ..+|++|+.+ ++.+++|.||+.|.+
T Consensus 235 r~~I~~v~~v~g~Gtvv~G~V~~G~l~~Gd~v~i~P~~~~~~VksI~~~-~~~~~~a~aG~~v~i 298 (446)
T PTZ00141 235 RLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPSGVTTEVKSVEMH-HEQLAEAVPGDNVGF 298 (446)
T ss_pred EEEEEEEEecCCceEEEEEEEEcceEecCCEEEEccCCcEEEEEEEEec-CcccCEECCCCEEEE
Confidence 8899999999999999999999999999999999764 6899999987 688999999999986
No 20
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.96 E-value=8.8e-28 Score=277.81 Aligned_cols=232 Identities=26% Similarity=0.375 Sum_probs=183.0
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCcc-------------------------------cccccCCceeeeeeEEEEEec
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKV-------------------------------AAAEAGGITQGIGAYKVQVPV 537 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~~v-------------------------------~~~e~gGiTqdIga~~V~i~~ 537 (1018)
+...+|+++||+|||||||+.+|+.... ......|+|.++..+.+.
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~--- 81 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFE--- 81 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEec---
Confidence 3456799999999999999999863110 112356888887665543
Q ss_pred CCceecEEEEeCCCccchHHHHHhhhccCCEEEEEEecCCCC-------ChhHHHHHHHHHHcCCC-EEEEEecCCCCC-
Q 001745 538 DGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGI-------RPQTNEAIAHAKAAGVP-IVIAINKIDKDG- 608 (1018)
Q Consensus 538 dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVILVVDAddGv-------~~QT~E~I~~ak~~gIP-IIVVINKiDL~~- 608 (1018)
..++.++|+|||||++|...+..++..+|++|||||+++|. ..||++++..+...++| +||++||||+..
T Consensus 82 -~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~ 160 (447)
T PLN00043 82 -TTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 160 (447)
T ss_pred -CCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCch
Confidence 45678999999999999999999999999999999999874 27999999999999997 799999999862
Q ss_pred -CC---hHHHHHHH----HhcCCCCCCCCCCCcEEEEecCCCCChHH------------HHHHHHHHHHHhhhhcCCCCC
Q 001745 609 -AN---PERVMQEL----SSIGLMPEDWGGDIPMVQISALKGEKVDD------------LLETIMLVAELQELKANPHRN 668 (1018)
Q Consensus 609 -a~---~erv~~eL----~e~gl~~e~~g~~vpiVeISAktGeGIde------------LleaIl~lael~~lk~~p~r~ 668 (1018)
++ .+++.+++ .+.++..+ +++|+++||++|+||.+ |+++|.. +.......+.+
T Consensus 161 ~~~~~~~~~i~~ei~~~l~~~g~~~~----~~~~ipiSa~~G~ni~~~~~~~~Wy~g~tLl~~l~~---i~~p~~~~~~p 233 (447)
T PLN00043 161 KYSKARYDEIVKEVSSYLKKVGYNPD----KIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQ---INEPKRPSDKP 233 (447)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCcc----cceEEEEeccccccccccccCCcccchHHHHHHHhh---cCCCccccCCC
Confidence 22 22333333 33454322 47899999999999864 5555532 22223345678
Q ss_pred CcceEEEEeeecCCCcEEEEEeEeeEEecCCEEEEccc--eeEEEEEeccCCCcccccCCCccEEE
Q 001745 669 AKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEA--FGKVRALFDDSGNRVDEAGPSIPVQI 732 (1018)
Q Consensus 669 ~~g~ViEs~~dkg~G~VatglV~~GtLkvGD~Vv~G~~--~gKVRaI~~~~g~~V~eA~pg~~V~V 732 (1018)
+...|.+++..++.|+|++|+|.+|+|++||.|++++. .++|++|+.+ ++.+++|.||+.|.+
T Consensus 234 lr~~I~~v~~~~g~G~vv~G~V~~G~l~~Gd~v~~~P~~~~~~VksI~~~-~~~v~~a~aGd~v~i 298 (447)
T PLN00043 234 LRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMH-HESLQEALPGDNVGF 298 (447)
T ss_pred cEEEEEEEEEeCCcEEEEEEEEECCEEeeCCEEEEcCCCCEEEEEEEEEC-CeEeCEecCCCeEEE
Confidence 88999999999999999999999999999999999874 7899999987 689999999999975
No 21
>PRK12735 elongation factor Tu; Reviewed
Probab=99.96 E-value=9.7e-28 Score=273.49 Aligned_cols=232 Identities=29% Similarity=0.328 Sum_probs=181.9
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcC-------cc---------cccccCCceeeeeeEEEEEecCCceecEEEEeCCCcc
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKT-------KV---------AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHE 553 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~-------~v---------~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE 553 (1018)
...+|+++||+|||||||+++|++. ++ ......|+|++.....+ ...+..++|+|||||+
T Consensus 11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~----~~~~~~i~~iDtPGh~ 86 (396)
T PRK12735 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEY----ETANRHYAHVDCPGHA 86 (396)
T ss_pred CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEE----cCCCcEEEEEECCCHH
Confidence 4467999999999999999999852 11 12336788988654433 2345679999999999
Q ss_pred chHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEE-EEEecCCCCCCC--hHHHHHH----HHhcCCCCC
Q 001745 554 AFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIV-IAINKIDKDGAN--PERVMQE----LSSIGLMPE 626 (1018)
Q Consensus 554 ~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPII-VVINKiDL~~a~--~erv~~e----L~e~gl~~e 626 (1018)
.|...+.+++..+|+++||+|+.++..+|+.+++..+...++|.| +++||+|+.... .+.+..+ +..+++.
T Consensus 87 ~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~-- 164 (396)
T PRK12735 87 DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP-- 164 (396)
T ss_pred HHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCC--
Confidence 999999999999999999999999999999999999999999955 689999996421 1122222 2333321
Q ss_pred CCCCCCcEEEEecCCCC----------ChHHHHHHHHHHHHHhhhhcCCCCCCcceEEEEeeecCCCcEEEEEeEeeEEe
Q 001745 627 DWGGDIPMVQISALKGE----------KVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLK 696 (1018)
Q Consensus 627 ~~g~~vpiVeISAktGe----------GIdeLleaIl~lael~~lk~~p~r~~~g~ViEs~~dkg~G~VatglV~~GtLk 696 (1018)
+.+++++++||++|. ++.+|+++|..... ......+.++...|.+++..+|.|+|++|+|.+|+|+
T Consensus 165 --~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~--~p~~~~~~p~r~~I~~~f~v~g~Gtvv~G~v~~G~i~ 240 (396)
T PRK12735 165 --GDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP--EPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIVK 240 (396)
T ss_pred --cCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC--CCCccCCCCeEEEEEEEEecCCceEEEEEEEEecEEe
Confidence 135899999999994 67888888865322 2233455678889999999999999999999999999
Q ss_pred cCCEEEEcc----ceeEEEEEeccCCCcccccCCCccEEE
Q 001745 697 KGDVVVCGE----AFGKVRALFDDSGNRVDEAGPSIPVQI 732 (1018)
Q Consensus 697 vGD~Vv~G~----~~gKVRaI~~~~g~~V~eA~pg~~V~V 732 (1018)
+||.|.+.+ ...+|++|+.+ ++.+++|.||+.|.+
T Consensus 241 ~gd~v~i~p~~~~~~~~VksI~~~-~~~v~~a~aGd~v~l 279 (396)
T PRK12735 241 VGDEVEIVGIKETQKTTVTGVEMF-RKLLDEGQAGDNVGV 279 (396)
T ss_pred CCCEEEEecCCCCeEEEEEEEEEC-CeEeCEECCCCEEEE
Confidence 999998754 36789999987 689999999999976
No 22
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=5.5e-28 Score=270.42 Aligned_cols=231 Identities=27% Similarity=0.409 Sum_probs=189.6
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcc-------------------------------cccccCCceeeeeeEEEEEecC
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKV-------------------------------AAAEAGGITQGIGAYKVQVPVD 538 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v-------------------------------~~~e~gGiTqdIga~~V~i~~d 538 (1018)
...+++++||+|||||||+.+|+.... ....+.|+|.++....++.
T Consensus 6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet--- 82 (428)
T COG5256 6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET--- 82 (428)
T ss_pred CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec---
Confidence 445799999999999999999853211 1123568898887766654
Q ss_pred CceecEEEEeCCCccchHHHHHhhhccCCEEEEEEecCCC-------CChhHHHHHHHHHHcCCC-EEEEEecCCCCCCC
Q 001745 539 GKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDG-------IRPQTNEAIAHAKAAGVP-IVIAINKIDKDGAN 610 (1018)
Q Consensus 539 gk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVILVVDAddG-------v~~QT~E~I~~ak~~gIP-IIVVINKiDL~~a~ 610 (1018)
..+.++++|||||.+|...+..++++||++|||||+.++ ++.||+||+-+++..++. +||++||||+..|+
T Consensus 83 -~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wd 161 (428)
T COG5256 83 -DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWD 161 (428)
T ss_pred -CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccC
Confidence 446799999999999999999999999999999999997 899999999999999998 99999999999988
Q ss_pred hHHHHHH---HHh----cCCCCCCCCCCCcEEEEecCCCCChHH------------HHHHHHHHHHHhhhhcCCCCCCcc
Q 001745 611 PERVMQE---LSS----IGLMPEDWGGDIPMVQISALKGEKVDD------------LLETIMLVAELQELKANPHRNAKG 671 (1018)
Q Consensus 611 ~erv~~e---L~e----~gl~~e~~g~~vpiVeISAktGeGIde------------LleaIl~lael~~lk~~p~r~~~g 671 (1018)
.+++.+. +.. .++.. .+++|+||||.+|+|+.+ |+++|. .+.......+.|+..
T Consensus 162 e~rf~ei~~~v~~l~k~~G~~~----~~v~FIPiSg~~G~Nl~~~s~~~pWY~GpTLleaLd---~~~~p~~~~d~Plr~ 234 (428)
T COG5256 162 EERFEEIVSEVSKLLKMVGYNP----KDVPFIPISGFKGDNLTKKSENMPWYKGPTLLEALD---QLEPPERPLDKPLRL 234 (428)
T ss_pred HHHHHHHHHHHHHHHHHcCCCc----cCCeEEecccccCCcccccCcCCcCccCChHHHHHh---ccCCCCCCCCCCeEe
Confidence 7765433 222 33332 258999999999999865 666664 222233345678889
Q ss_pred eEEEEeeecCCCcEEEEEeEeeEEecCCEEEEccc--eeEEEEEeccCCCcccccCCCccEEE
Q 001745 672 TVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEA--FGKVRALFDDSGNRVDEAGPSIPVQI 732 (1018)
Q Consensus 672 ~ViEs~~dkg~G~VatglV~~GtLkvGD~Vv~G~~--~gKVRaI~~~~g~~V~eA~pg~~V~V 732 (1018)
.|.+++...+.|++..++|..|.|++||.|++.+. .+.|+++.++ +++++.|.||+.|.+
T Consensus 235 pI~~v~~i~~~gtv~vGrVEsG~i~~g~~v~~~p~~~~~evksie~~-~~~~~~a~~GD~i~~ 296 (428)
T COG5256 235 PIQDVYSISGIGTVPVGRVESGVIKPGQKVTFMPAGVVGEVKSIEMH-HEEISQAEPGDNVGF 296 (428)
T ss_pred EeeeEEEecCCceEEEEEEeeeeeccCCEEEEecCcceEEEeeeeec-ccccccCCCCCeEEE
Confidence 99999888999999999999999999999999764 7899999998 789999999999964
No 23
>CHL00071 tufA elongation factor Tu
Probab=99.96 E-value=2.2e-27 Score=271.60 Aligned_cols=234 Identities=31% Similarity=0.349 Sum_probs=180.9
Q ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHcCc----------------ccccccCCceeeeeeEEEEEecCCceecEEEEeCCC
Q 001745 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTK----------------VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG 551 (1018)
Q Consensus 488 ~~r~pkVaImGhvdvGKTTLLnrL~~~~----------------v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPG 551 (1018)
.+...+|+++||+|||||||+++|+... ......+|+|++.....+ ..++..++|+||||
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~----~~~~~~~~~iDtPG 84 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEY----ETENRHYAHVDCPG 84 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEE----ccCCeEEEEEECCC
Confidence 3455789999999999999999998531 112334788887655433 33456799999999
Q ss_pred ccchHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCC-EEEEEecCCCCCCCh--H----HHHHHHHhcCCC
Q 001745 552 HEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGANP--E----RVMQELSSIGLM 624 (1018)
Q Consensus 552 HE~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIP-IIVVINKiDL~~a~~--e----rv~~eL~e~gl~ 624 (1018)
|..|...+.+++..+|+++||+|+.+++++|+.+++..+...++| +|+++||+|+..... + ++...+...++.
T Consensus 85 h~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~ 164 (409)
T CHL00071 85 HADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFP 164 (409)
T ss_pred hHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999 789999999964221 1 222233333332
Q ss_pred CCCCCCCCcEEEEecCCCCCh------------------HHHHHHHHHHHHHhhhhcCCCCCCcceEEEEeeecCCCcEE
Q 001745 625 PEDWGGDIPMVQISALKGEKV------------------DDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVA 686 (1018)
Q Consensus 625 ~e~~g~~vpiVeISAktGeGI------------------deLleaIl~lael~~lk~~p~r~~~g~ViEs~~dkg~G~Va 686 (1018)
. ..++++++||++|.|+ ..|+++|.... .....+.+.++...|.+++..++.|+|+
T Consensus 165 ~----~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~--~~p~~~~~~p~r~~I~~v~~~~g~G~Vv 238 (409)
T CHL00071 165 G----DDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYI--PTPERDTDKPFLMAIEDVFSITGRGTVA 238 (409)
T ss_pred C----CcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhC--CCCCCCCCCCEEEEEEEEEEeCCCeEEE
Confidence 1 2489999999999743 45555554321 1122334567888999999999999999
Q ss_pred EEEeEeeEEecCCEEEE-c---cceeEEEEEeccCCCcccccCCCccEEE
Q 001745 687 TFILQNGTLKKGDVVVC-G---EAFGKVRALFDDSGNRVDEAGPSIPVQI 732 (1018)
Q Consensus 687 tglV~~GtLkvGD~Vv~-G---~~~gKVRaI~~~~g~~V~eA~pg~~V~V 732 (1018)
+|+|.+|+|++||.|.+ + ....+|++|+.+ ++.+++|.||+.|.+
T Consensus 239 ~G~V~sG~l~~Gd~v~i~p~~~~~~~~VksI~~~-~~~v~~a~aGd~v~i 287 (409)
T CHL00071 239 TGRIERGTVKVGDTVEIVGLRETKTTTVTGLEMF-QKTLDEGLAGDNVGI 287 (409)
T ss_pred EEEEecCEEeeCCEEEEeeCCCCcEEEEEEEEEc-CcCCCEECCCceeEE
Confidence 99999999999999976 2 246899999987 578999999999965
No 24
>PLN03127 Elongation factor Tu; Provisional
Probab=99.96 E-value=1.8e-27 Score=275.20 Aligned_cols=233 Identities=29% Similarity=0.339 Sum_probs=180.6
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcC----------------cccccccCCceeeeeeEEEEEecCCceecEEEEeCCCc
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKT----------------KVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH 552 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~----------------~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGH 552 (1018)
+...+|+++||+|||||||+++|.+. ....+..+|+|++.....+ ...+.+++|+|||||
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~----~~~~~~i~~iDtPGh 134 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEY----ETAKRHYAHVDCPGH 134 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEE----cCCCeEEEEEECCCc
Confidence 45578999999999999999999621 0112345789988755443 334568999999999
Q ss_pred cchHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCC-EEEEEecCCCCCCC--hHHHHHHHHh----cCCCC
Q 001745 553 EAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGAN--PERVMQELSS----IGLMP 625 (1018)
Q Consensus 553 E~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIP-IIVVINKiDL~~a~--~erv~~eL~e----~gl~~ 625 (1018)
..|...+..++..+|+++||+|+++++++|+.+++..+...++| +|+++||+|+.+.. .+.+..++.+ .++.
T Consensus 135 ~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~- 213 (447)
T PLN03127 135 ADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFP- 213 (447)
T ss_pred cchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCC-
Confidence 99999999999999999999999999999999999999999999 67899999996421 1112222222 2221
Q ss_pred CCCCCCCcEEEEecC---CCCC-------hHHHHHHHHHHHHHhhhhcCCCCCCcceEEEEeeecCCCcEEEEEeEeeEE
Q 001745 626 EDWGGDIPMVQISAL---KGEK-------VDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTL 695 (1018)
Q Consensus 626 e~~g~~vpiVeISAk---tGeG-------IdeLleaIl~lael~~lk~~p~r~~~g~ViEs~~dkg~G~VatglV~~GtL 695 (1018)
...+|++++||+ +|.| +.+|+++|..... ......+.++...|.+++..+|.|+|++|+|.+|+|
T Consensus 214 ---~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp--~p~r~~~~pfr~~I~~vf~v~g~GtVvtG~v~~G~i 288 (447)
T PLN03127 214 ---GDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP--EPVRVLDKPFLMPIEDVFSIQGRGTVATGRVEQGTI 288 (447)
T ss_pred ---CCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC--CCCcccccceEeeEEEEEEcCCceEEEEEEEEccEE
Confidence 235899999886 5555 6788888764322 222334567888899999999999999999999999
Q ss_pred ecCCEEEEc------cceeEEEEEeccCCCcccccCCCccEEE
Q 001745 696 KKGDVVVCG------EAFGKVRALFDDSGNRVDEAGPSIPVQI 732 (1018)
Q Consensus 696 kvGD~Vv~G------~~~gKVRaI~~~~g~~V~eA~pg~~V~V 732 (1018)
++||.|.+. ....+|++|+.+ ++.+++|.||+.|.+
T Consensus 289 ~~Gd~v~i~p~~~~g~~~~~VksI~~~-~~~v~~a~aGd~v~l 330 (447)
T PLN03127 289 KVGEEVEIVGLRPGGPLKTTVTGVEMF-KKILDQGQAGDNVGL 330 (447)
T ss_pred ecCCEEEEcccCCCCcEEEEEEEEEEE-CcEeCEEcCCCEEEE
Confidence 999999763 236799999987 678999999999975
No 25
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.96 E-value=2.2e-27 Score=270.33 Aligned_cols=235 Identities=27% Similarity=0.317 Sum_probs=176.9
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcC----------------cccccccCCceeeeeeEEEEEecCCceecEEEEeCCCc
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKT----------------KVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH 552 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~----------------~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGH 552 (1018)
+...+|+++||+|||||||+++|+.. ....+...|+|++..... +...+..++|||||||
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~----~~~~~~~~~liDtpGh 85 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVE----YETENRHYAHVDCPGH 85 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEE----EcCCCEEEEEEECCch
Confidence 45578999999999999999999732 111234578998864433 2345568999999999
Q ss_pred cchHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEE-EEEecCCCCCCC--hHH----HHHHHHhcCCCC
Q 001745 553 EAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIV-IAINKIDKDGAN--PER----VMQELSSIGLMP 625 (1018)
Q Consensus 553 E~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPII-VVINKiDL~~a~--~er----v~~eL~e~gl~~ 625 (1018)
+.|...+.+++..+|+++||+|+++++.+|+.+++..+...++|.+ +++||+|+.... .+. +...+..+++.
T Consensus 86 ~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~- 164 (394)
T TIGR00485 86 ADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFP- 164 (394)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCC-
Confidence 9999999999999999999999999999999999999999999955 689999996421 111 22222233321
Q ss_pred CCCCCCCcEEEEecCCCC-ChHHHHHHHHHHHH-Hhh----hhcCCCCCCcceEEEEeeecCCCcEEEEEeEeeEEecCC
Q 001745 626 EDWGGDIPMVQISALKGE-KVDDLLETIMLVAE-LQE----LKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGD 699 (1018)
Q Consensus 626 e~~g~~vpiVeISAktGe-GIdeLleaIl~lae-l~~----lk~~p~r~~~g~ViEs~~dkg~G~VatglV~~GtLkvGD 699 (1018)
+..++++++||++|. |..++.+.+..+.+ +.. ...+.+.++...|.+++..+|.|+|++|+|.+|+|++||
T Consensus 165 ---~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~~~~~~~~~p~r~~V~~vf~~~g~G~Vv~G~v~~G~l~~gd 241 (394)
T TIGR00485 165 ---GDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYIPTPERETDKPFLMPIEDVFSITGRGTVVTGRVERGIVKVGE 241 (394)
T ss_pred ---ccCccEEECccccccccCCchhHhHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCCceEEEEEEEEeeEEeCCC
Confidence 124899999999985 43333332221111 111 122345678889999999999999999999999999999
Q ss_pred EEEEcc----ceeEEEEEeccCCCcccccCCCccEEE
Q 001745 700 VVVCGE----AFGKVRALFDDSGNRVDEAGPSIPVQI 732 (1018)
Q Consensus 700 ~Vv~G~----~~gKVRaI~~~~g~~V~eA~pg~~V~V 732 (1018)
.|++.+ ...+|++|+.+ ++.+++|.||+.|.+
T Consensus 242 ~v~i~p~~~~~~~~VksI~~~-~~~~~~a~aGd~v~l 277 (394)
T TIGR00485 242 EVEIVGLKDTRKTTVTGVEMF-RKELDEGRAGDNVGL 277 (394)
T ss_pred EEEEecCCCCcEEEEEEEEEC-CeEEEEECCCCEEEE
Confidence 998743 36789999986 688999999999975
No 26
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.96 E-value=1.1e-27 Score=274.86 Aligned_cols=232 Identities=28% Similarity=0.450 Sum_probs=181.6
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCc--cc-----------------------------ccccCCceeeeeeEEEEEec
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKTK--VA-----------------------------AAEAGGITQGIGAYKVQVPV 537 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~~--v~-----------------------------~~e~gGiTqdIga~~V~i~~ 537 (1018)
....+|+++||+|||||||+++|+... +. .....|+|.++.+..+.
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~--- 81 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFE--- 81 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEc---
Confidence 455789999999999999999997421 10 12345888887765543
Q ss_pred CCceecEEEEeCCCccchHHHHHhhhccCCEEEEEEecCCC---CChhHHHHHHHHHHcCC-CEEEEEecCCCCCCChHH
Q 001745 538 DGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDG---IRPQTNEAIAHAKAAGV-PIVIAINKIDKDGANPER 613 (1018)
Q Consensus 538 dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVILVVDAddG---v~~QT~E~I~~ak~~gI-PIIVVINKiDL~~a~~er 613 (1018)
..++.++|||||||+.|...+..++..+|++|||||++++ ..+|+.+++..+...++ |+||++||+|+..++.++
T Consensus 82 -~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~ 160 (426)
T TIGR00483 82 -TDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEE 160 (426)
T ss_pred -cCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHH
Confidence 3457899999999999999888899999999999999998 88899998888877775 589999999997544432
Q ss_pred H---HHH----HHhcCCCCCCCCCCCcEEEEecCCCCChHH------------HHHHHHHHHHHhhhhcCCCCCCcceEE
Q 001745 614 V---MQE----LSSIGLMPEDWGGDIPMVQISALKGEKVDD------------LLETIMLVAELQELKANPHRNAKGTVI 674 (1018)
Q Consensus 614 v---~~e----L~e~gl~~e~~g~~vpiVeISAktGeGIde------------LleaIl~lael~~lk~~p~r~~~g~Vi 674 (1018)
+ ..+ +...++.. ..++++++||++|.||++ |+++|.. +.......+.++...|.
T Consensus 161 ~~~~~~ei~~~~~~~g~~~----~~~~~i~iSA~~g~ni~~~~~~~~w~~g~~l~~~l~~---~~~~~~~~~~p~r~~i~ 233 (426)
T TIGR00483 161 FEAIKKEVSNLIKKVGYNP----DTVPFIPISAWNGDNVIKKSENTPWYKGKTLLEALDA---LEPPEKPTDKPLRIPIQ 233 (426)
T ss_pred HHHHHHHHHHHHHHcCCCc----ccceEEEeeccccccccccccCCccccchHHHHHHhc---CCCCCCccCCCcEEEEE
Confidence 2 222 22333321 247899999999999986 5555532 22222234567888999
Q ss_pred EEeeecCCCcEEEEEeEeeEEecCCEEEEcc--ceeEEEEEeccCCCcccccCCCccEEE
Q 001745 675 EAGLHKSKGPVATFILQNGTLKKGDVVVCGE--AFGKVRALFDDSGNRVDEAGPSIPVQI 732 (1018)
Q Consensus 675 Es~~dkg~G~VatglV~~GtLkvGD~Vv~G~--~~gKVRaI~~~~g~~V~eA~pg~~V~V 732 (1018)
+++..+|.|+|++|+|.+|+|++||.|++++ ...+|++|+.+ ++.+++|.||+.|.+
T Consensus 234 ~v~~~~g~G~vv~G~v~~G~i~~gd~v~i~P~~~~~~VksI~~~-~~~~~~a~aG~~v~i 292 (426)
T TIGR00483 234 DVYSITGVGTVPVGRVETGVLKPGDKVVFEPAGVSGEVKSIEMH-HEQIEQAEPGDNIGF 292 (426)
T ss_pred EEEecCCCeEEEEEEEccceeecCCEEEECCCCcEEEEEEEEEC-CcccCEEcCCCEEEE
Confidence 9999999999999999999999999999965 47899999987 678999999999976
No 27
>PLN03126 Elongation factor Tu; Provisional
Probab=99.95 E-value=3.8e-27 Score=274.28 Aligned_cols=234 Identities=29% Similarity=0.306 Sum_probs=181.0
Q ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHcCc----------------ccccccCCceeeeeeEEEEEecCCceecEEEEeCCC
Q 001745 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTK----------------VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG 551 (1018)
Q Consensus 488 ~~r~pkVaImGhvdvGKTTLLnrL~~~~----------------v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPG 551 (1018)
.+...+|+++||+|||||||+++|+... .......|+|++.....+. ..+..++||||||
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~----~~~~~i~liDtPG 153 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYE----TENRHYAHVDCPG 153 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEe----cCCcEEEEEECCC
Confidence 3455789999999999999999998421 1223456888876654443 2456899999999
Q ss_pred ccchHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCC-EEEEEecCCCCCCC--hHHHH----HHHHhcCCC
Q 001745 552 HEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGAN--PERVM----QELSSIGLM 624 (1018)
Q Consensus 552 HE~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIP-IIVVINKiDL~~a~--~erv~----~eL~e~gl~ 624 (1018)
|++|...+..++..+|+++||+|+.+|+++||.+++..+...++| +|+++||+|+.... .+.+. ..+...++.
T Consensus 154 h~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~ 233 (478)
T PLN03126 154 HADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFP 233 (478)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999999 88999999996421 12222 223333432
Q ss_pred CCCCCCCCcEEEEecCCCCCh------------------HHHHHHHHHHHHHhhhhcCCCCCCcceEEEEeeecCCCcEE
Q 001745 625 PEDWGGDIPMVQISALKGEKV------------------DDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVA 686 (1018)
Q Consensus 625 ~e~~g~~vpiVeISAktGeGI------------------deLleaIl~lael~~lk~~p~r~~~g~ViEs~~dkg~G~Va 686 (1018)
..+++++++||++|.++ ..|++.|..+. .......+.++...|.+++..+|.|+|+
T Consensus 234 ----~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~--~~p~r~~~~p~r~~I~~vf~v~g~GtVv 307 (478)
T PLN03126 234 ----GDDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYI--PIPQRQTDLPFLLAVEDVFSITGRGTVA 307 (478)
T ss_pred ----cCcceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhC--CCCCCccccceeeEEEEEEEeCCceEEE
Confidence 13689999999998543 34555443211 0111234567888999999999999999
Q ss_pred EEEeEeeEEecCCEEEEccc----eeEEEEEeccCCCcccccCCCccEEE
Q 001745 687 TFILQNGTLKKGDVVVCGEA----FGKVRALFDDSGNRVDEAGPSIPVQI 732 (1018)
Q Consensus 687 tglV~~GtLkvGD~Vv~G~~----~gKVRaI~~~~g~~V~eA~pg~~V~V 732 (1018)
+|.|.+|+|++||.|++++. ..+|++|+.+ ++.+++|.||+.|.+
T Consensus 308 ~G~V~sG~i~~Gd~v~i~p~~~~~~~~VksI~~~-~~~v~~A~aG~~v~l 356 (478)
T PLN03126 308 TGRVERGTVKVGETVDIVGLRETRSTTVTGVEMF-QKILDEALAGDNVGL 356 (478)
T ss_pred EEEEEcCeEecCCEEEEecCCCceEEEEEEEEEC-CeECCEEeCCceeee
Confidence 99999999999999999653 5799999988 688999999999975
No 28
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.95 E-value=3.4e-27 Score=264.85 Aligned_cols=241 Identities=30% Similarity=0.407 Sum_probs=198.8
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccc----------------cccCCceeeeeeEEEEEecCCceecEEEEeCCCcc
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAA----------------AEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHE 553 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v~~----------------~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE 553 (1018)
.-.+|+|+-|+|||||||++.|++..... ..+.|||+ ......+.+++++|+++|||||.
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITI----LaKnTav~~~~~~INIvDTPGHA 79 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITI----LAKNTAVNYNGTRINIVDTPGHA 79 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEE----EeccceeecCCeEEEEecCCCcC
Confidence 44689999999999999999997543221 23456663 23333345567899999999999
Q ss_pred chHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHh----cCCCCCCCC
Q 001745 554 AFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSS----IGLMPEDWG 629 (1018)
Q Consensus 554 ~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e----~gl~~e~~g 629 (1018)
+|.....|.++..|.++|+|||.+|.||||+-.++.+.+.+.+.|||+||+|++++.++++..+... ++...++
T Consensus 80 DFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQ-- 157 (603)
T COG1217 80 DFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQ-- 157 (603)
T ss_pred CccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhh--
Confidence 9999999999999999999999999999999999999999999999999999999999888766443 4433333
Q ss_pred CCCcEEEEecCCC----------CChHHHHHHHHHHHHHhhhhcCCCCCCcceEEEEeeecCCCcEEEEEeEeeEEecCC
Q 001745 630 GDIPMVQISALKG----------EKVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGD 699 (1018)
Q Consensus 630 ~~vpiVeISAktG----------eGIdeLleaIl~lael~~lk~~p~r~~~g~ViEs~~dkg~G~VatglV~~GtLkvGD 699 (1018)
-++|++..||+.| .++.-||+.|+.. .+.+..+++.+++..|....++...|.++.++|.+|++++|+
T Consensus 158 LdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~h--vp~P~~~~d~PlQ~qvt~Ldyn~y~GrIgigRi~~G~vk~~q 235 (603)
T COG1217 158 LDFPIVYASARNGTASLDPEDEADDMAPLFETILDH--VPAPKGDLDEPLQMQVTQLDYNSYVGRIGIGRIFRGTVKPNQ 235 (603)
T ss_pred CCCcEEEeeccCceeccCccccccchhHHHHHHHHh--CCCCCCCCCCCeEEEEEeeccccccceeEEEEEecCcccCCC
Confidence 4689999999988 4678899998743 445567788899999988888899999999999999999999
Q ss_pred EEEE----c-cceeEEEEEeccCCC---cccccCCCccEEEeccCCC
Q 001745 700 VVVC----G-EAFGKVRALFDDSGN---RVDEAGPSIPVQIIGLNGV 738 (1018)
Q Consensus 700 ~Vv~----G-~~~gKVRaI~~~~g~---~V~eA~pg~~V~V~Gl~~v 738 (1018)
.|.+ | ...+||..++...|- .+++|.+|+.|+|.|+.++
T Consensus 236 ~V~~i~~~g~~~~gri~kllgf~GL~R~ei~eA~AGDIVaiaG~~~~ 282 (603)
T COG1217 236 QVALIKSDGTTENGRITKLLGFLGLERIEIEEAEAGDIVAIAGLEDI 282 (603)
T ss_pred eEEEEcCCCcEEeeEEEeeeeccceeeeecccccccCEEEEcCcccc
Confidence 8876 2 247899999988763 4899999999999888754
No 29
>PRK00049 elongation factor Tu; Reviewed
Probab=99.95 E-value=5.8e-27 Score=267.20 Aligned_cols=233 Identities=28% Similarity=0.312 Sum_probs=181.7
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCc----------------ccccccCCceeeeeeEEEEEecCCceecEEEEeCCCc
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKTK----------------VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH 552 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~~----------------v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGH 552 (1018)
+...+|+++||+|||||||+++|++.. ......+|+|++.....+ ...+..++|+|||||
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~----~~~~~~i~~iDtPG~ 85 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEY----ETEKRHYAHVDCPGH 85 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEE----cCCCeEEEEEECCCH
Confidence 345689999999999999999998521 112236788988654332 234567999999999
Q ss_pred cchHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEE-EEEecCCCCCCC--hHHHHHHH----HhcCCCC
Q 001745 553 EAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIV-IAINKIDKDGAN--PERVMQEL----SSIGLMP 625 (1018)
Q Consensus 553 E~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPII-VVINKiDL~~a~--~erv~~eL----~e~gl~~ 625 (1018)
..|...+..++..+|+++||+|+.+++.+|+.+++.++...++|+| +++||+|+.... .+.+..++ ...++.
T Consensus 86 ~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~- 164 (396)
T PRK00049 86 ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP- 164 (396)
T ss_pred HHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCC-
Confidence 9999999999999999999999999999999999999999999965 689999996421 11122222 223331
Q ss_pred CCCCCCCcEEEEecCCCC----------ChHHHHHHHHHHHHHhhhhcCCCCCCcceEEEEeeecCCCcEEEEEeEeeEE
Q 001745 626 EDWGGDIPMVQISALKGE----------KVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTL 695 (1018)
Q Consensus 626 e~~g~~vpiVeISAktGe----------GIdeLleaIl~lael~~lk~~p~r~~~g~ViEs~~dkg~G~VatglV~~GtL 695 (1018)
..+++++++||++|. |+..|+++|..... ......+.++...|.+++..+|.|+|++|+|.+|+|
T Consensus 165 ---~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~--~p~~~~~~p~r~~I~~~f~v~g~G~Vv~G~v~~G~i 239 (396)
T PRK00049 165 ---GDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP--TPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGII 239 (396)
T ss_pred ---ccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC--CCCCCCCCCeEEEEEEEEeeCCceEEEEEEEeeeEE
Confidence 235899999999986 56778877764321 122234567888999999999999999999999999
Q ss_pred ecCCEEEEc----cceeEEEEEeccCCCcccccCCCccEEE
Q 001745 696 KKGDVVVCG----EAFGKVRALFDDSGNRVDEAGPSIPVQI 732 (1018)
Q Consensus 696 kvGD~Vv~G----~~~gKVRaI~~~~g~~V~eA~pg~~V~V 732 (1018)
++||.|++. ....+|++|+.+ ++.+++|.||+.|.+
T Consensus 240 ~~gd~v~i~p~~~~~~~~VksI~~~-~~~~~~a~~Gd~v~l 279 (396)
T PRK00049 240 KVGEEVEIVGIRDTQKTTVTGVEMF-RKLLDEGQAGDNVGA 279 (396)
T ss_pred ecCCEEEEeecCCCceEEEEEEEEC-CcEeCEEcCCCEEEE
Confidence 999999774 356899999987 688999999999976
No 30
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.95 E-value=9.2e-27 Score=266.31 Aligned_cols=238 Identities=28% Similarity=0.376 Sum_probs=181.7
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcc---cccccCCceeeeeeEEEEEe------------c----CC------ceecE
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKV---AAAEAGGITQGIGAYKVQVP------------V----DG------KLQPC 544 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v---~~~e~gGiTqdIga~~V~i~------------~----dg------k~~~I 544 (1018)
...+|+++||+|||||||+++|..... ......|+|.++++..+... . ++ ....+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 346799999999999999999975322 23345688888775443211 0 11 13679
Q ss_pred EEEeCCCccchHHHHHhhhccCCEEEEEEecCCCC-ChhHHHHHHHHHHcCCC-EEEEEecCCCCCCCh-HHHHHHHHhc
Q 001745 545 VFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGI-RPQTNEAIAHAKAAGVP-IVIAINKIDKDGANP-ERVMQELSSI 621 (1018)
Q Consensus 545 tfIDTPGHE~F~~~r~rg~~~ADiVILVVDAddGv-~~QT~E~I~~ak~~gIP-IIVVINKiDL~~a~~-erv~~eL~e~ 621 (1018)
+|||||||+.|...+..++..+|++|||||++++. ++|+.+++..+...+++ +|+++||+|+..... .....++..+
T Consensus 83 ~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~~~~~~~~~i~~~ 162 (406)
T TIGR03680 83 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKEKALENYEEIKEF 162 (406)
T ss_pred EEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999998 89999999998888765 999999999964321 1112222221
Q ss_pred CCCCCCCCCCCcEEEEecCCCCChHHHHHHHHHHHHHhhhhcCCCCCCcceEEEEeeecC--------CCcEEEEEeEee
Q 001745 622 GLMPEDWGGDIPMVQISALKGEKVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKS--------KGPVATFILQNG 693 (1018)
Q Consensus 622 gl~~e~~g~~vpiVeISAktGeGIdeLleaIl~lael~~lk~~p~r~~~g~ViEs~~dkg--------~G~VatglV~~G 693 (1018)
....+...++++++||++|+|+++|+++|.... .....+.+.++...|.+++...+ +|+|++|.|.+|
T Consensus 163 --l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l--~~~~~~~~~~~~~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G 238 (406)
T TIGR03680 163 --VKGTVAENAPIIPVSALHNANIDALLEAIEKFI--PTPERDLDKPPLMYVARSFDVNKPGTPPEKLKGGVIGGSLIQG 238 (406)
T ss_pred --hhhcccCCCeEEEEECCCCCChHHHHHHHHHhC--CCCCCCCCCCcEEEEEEEEeecCCCccccCCceeEEEEEEEeC
Confidence 111123357899999999999999999997532 22233345678888888875443 678999999999
Q ss_pred EEecCCEEEEccc--------------eeEEEEEeccCCCcccccCCCccEEE
Q 001745 694 TLKKGDVVVCGEA--------------FGKVRALFDDSGNRVDEAGPSIPVQI 732 (1018)
Q Consensus 694 tLkvGD~Vv~G~~--------------~gKVRaI~~~~g~~V~eA~pg~~V~V 732 (1018)
+|++||.|.+++. ..+|++|+.+ +.++++|.||+.|.|
T Consensus 239 ~i~~gd~v~i~P~~~~~~~g~~~~~~~~~~V~sI~~~-~~~~~~a~~G~~v~i 290 (406)
T TIGR03680 239 KLKVGDEIEIRPGIKVEKGGKTKWEPIYTEITSLRAG-GYKVEEARPGGLVGV 290 (406)
T ss_pred EEeCCCEEEEccCccccccccccccccceEEeEEEEC-CEECCEEcCCCEEEE
Confidence 9999999999764 3589999987 688999999999986
No 31
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=7.2e-27 Score=266.47 Aligned_cols=249 Identities=27% Similarity=0.356 Sum_probs=202.5
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcC---------------cccccccCCceeeeeeEEEEEecCCceecEEEEeCCCcc
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKT---------------KVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHE 553 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~---------------~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE 553 (1018)
.+..+++|+-|+|||||||.++|+.- +...+.+.|||.......+.+.. +..+.+++||||||.
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~-~~~ylLNLIDTPGHv 136 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKD-GQSYLLNLIDTPGHV 136 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEc-CCceEEEeecCCCcc
Confidence 46678999999999999999998631 12234678999877666666654 777899999999999
Q ss_pred chHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHhcCCCCCCCCCCCc
Q 001745 554 AFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIP 633 (1018)
Q Consensus 554 ~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~e~~g~~vp 633 (1018)
+|.....|.+..||++||||||.+|++.||...+..+...+..+|.|+||+|++.++++++..++.+.--.. ..+
T Consensus 137 DFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~-----~~~ 211 (650)
T KOG0462|consen 137 DFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPERVENQLFELFDIP-----PAE 211 (650)
T ss_pred cccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCC-----ccc
Confidence 999999999999999999999999999999999999999999999999999999999999999988742211 237
Q ss_pred EEEEecCCCCChHHHHHHHHHHHHHhhhhcCCCCCCcceEEEEeeecCCCcEEEEEeEeeEEecCCEEEEcc----ceeE
Q 001745 634 MVQISALKGEKVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE----AFGK 709 (1018)
Q Consensus 634 iVeISAktGeGIdeLleaIl~lael~~lk~~p~r~~~g~ViEs~~dkg~G~VatglV~~GtLkvGD~Vv~G~----~~gK 709 (1018)
++.+|||+|.|++++|++|+. .++.++...+.++...++++.+|..+|.++.+.|.+|.+++||.|.+.. ...+
T Consensus 212 ~i~vSAK~G~~v~~lL~AII~--rVPpP~~~~d~plr~Lifds~yD~y~G~I~~vrv~~G~vrkGdkV~~~~t~~~yev~ 289 (650)
T KOG0462|consen 212 VIYVSAKTGLNVEELLEAIIR--RVPPPKGIRDAPLRMLIFDSEYDEYRGVIALVRVVDGVVRKGDKVQSAATGKSYEVK 289 (650)
T ss_pred eEEEEeccCccHHHHHHHHHh--hCCCCCCCCCcchHHHhhhhhhhhhcceEEEEEEeeeeeecCCEEEEeecCcceEeE
Confidence 999999999999999999974 3566777888999999999999999999999999999999999998732 2456
Q ss_pred EEEEeccCCCcccccCCC---ccEEEec-cCCCCCCCCeEE
Q 001745 710 VRALFDDSGNRVDEAGPS---IPVQIIG-LNGVPIAGDEFE 746 (1018)
Q Consensus 710 VRaI~~~~g~~V~eA~pg---~~V~V~G-l~~vP~aGd~~~ 746 (1018)
+-.+...+...+.+..+| ..+...+ .+. +..||++.
T Consensus 290 ~vgvm~p~~~~~~~l~agqvGyIi~~mr~~~e-a~IGdTi~ 329 (650)
T KOG0462|consen 290 VVGVMRPEMTPVVELDAGQVGYIICNMRNVKE-AQIGDTIA 329 (650)
T ss_pred EeEEeccCceeeeeecccccceeEeccccccc-ccccceee
Confidence 666666666555544444 4433333 222 35666654
No 32
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=2.3e-26 Score=258.96 Aligned_cols=229 Identities=27% Similarity=0.355 Sum_probs=191.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCc---ccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEE
Q 001745 493 VLTIMGHVDHGKTTLLDHIRKTK---VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (1018)
Q Consensus 493 kVaImGhvdvGKTTLLnrL~~~~---v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiV 569 (1018)
.|+.+||.+||||||+..+.+.. .......|+|.|+++|+... .++.+.|+|+|||++|...+..++...|.+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~----~d~~~~fIDvpgh~~~i~~miag~~~~d~a 77 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKL----EDGVMGFIDVPGHPDFISNLLAGLGGIDYA 77 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccC----CCCceEEeeCCCcHHHHHHHHhhhcCCceE
Confidence 68999999999999999998643 33455789999999999765 334899999999999999999999999999
Q ss_pred EEEEecCCCCChhHHHHHHHHHHcCCC-EEEEEecCCCCCCChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCChHHH
Q 001745 570 VIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDL 648 (1018)
Q Consensus 570 ILVVDAddGv~~QT~E~I~~ak~~gIP-IIVVINKiDL~~a~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGeGIdeL 648 (1018)
+||||+++|+++||.|++..+...+++ .|+|+||+|+.+ ..++.+...+..-... ..+.++|.+|+++|+||++|
T Consensus 78 lLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d--~~r~e~~i~~Il~~l~--l~~~~i~~~s~~~g~GI~~L 153 (447)
T COG3276 78 LLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVD--EARIEQKIKQILADLS--LANAKIFKTSAKTGRGIEEL 153 (447)
T ss_pred EEEEeCccCcchhhHHHHHHHHhcCCCceEEEEecccccc--HHHHHHHHHHHHhhcc--cccccccccccccCCCHHHH
Confidence 999999999999999999999999999 699999999964 2232222222110011 13578899999999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCCcceEEEEeeecCCCcEEEEEeEeeEEecCCEEEEcc--ceeEEEEEeccCCCcccccCC
Q 001745 649 LETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE--AFGKVRALFDDSGNRVDEAGP 726 (1018)
Q Consensus 649 leaIl~lael~~lk~~p~r~~~g~ViEs~~dkg~G~VatglV~~GtLkvGD~Vv~G~--~~gKVRaI~~~~g~~V~eA~p 726 (1018)
.+.|..+.+ ....+.+.++.-.|..++..+|.|+|+||.+.+|++++||.+++.+ ...+||+|+.+ ++++++|.+
T Consensus 154 k~~l~~L~~--~~e~d~~~~fri~IDraFtVKGvGTVVtGtv~sG~V~v~D~L~l~p~~k~v~VRsIq~~-d~d~~~a~A 230 (447)
T COG3276 154 KNELIDLLE--EIERDEQKPFRIAIDRAFTVKGVGTVVTGTVLSGEVKVGDKLYLSPINKEVRVRSIQAH-DVDVEEAKA 230 (447)
T ss_pred HHHHHHhhh--hhhhccCCceEEEEeeEEEeccccEEEEeEEeeeeEEECCEEEEecCCCeEEEEeeeec-Ccchhhccc
Confidence 999987775 3344566677788889999999999999999999999999999975 47899999988 789999999
Q ss_pred CccEEE
Q 001745 727 SIPVQI 732 (1018)
Q Consensus 727 g~~V~V 732 (1018)
|++|.+
T Consensus 231 G~RVgL 236 (447)
T COG3276 231 GQRVGL 236 (447)
T ss_pred cceeee
Confidence 999953
No 33
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.94 E-value=2.8e-26 Score=262.44 Aligned_cols=228 Identities=25% Similarity=0.319 Sum_probs=168.7
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcc---------------------------------cccccCCceeeeeeEEEEEecC
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKV---------------------------------AAAEAGGITQGIGAYKVQVPVD 538 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v---------------------------------~~~e~gGiTqdIga~~V~i~~d 538 (1018)
.+|+|+||+|||||||+++|+.... ......|+|++.++..+.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~---- 76 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFS---- 76 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEc----
Confidence 3699999999999999999863210 012245778877655543
Q ss_pred CceecEEEEeCCCccchHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCC-EEEEEecCCCCCCChHHH---
Q 001745 539 GKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGANPERV--- 614 (1018)
Q Consensus 539 gk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIP-IIVVINKiDL~~a~~erv--- 614 (1018)
..+..++|||||||+.|...+..++..+|++|||+|+.+|+++||.+++..+...++| +|+++||+|+..++.+.+
T Consensus 77 ~~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i 156 (406)
T TIGR02034 77 TDKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDEEVFENI 156 (406)
T ss_pred cCCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccchHHHHHHH
Confidence 3456899999999999999889999999999999999999999999999999988886 889999999976554332
Q ss_pred HHHHH----hcCCCCCCCCCCCcEEEEecCCCCChHH------------HHHHHHHHHHHhhhhcCCCCCCcceEEEEee
Q 001745 615 MQELS----SIGLMPEDWGGDIPMVQISALKGEKVDD------------LLETIMLVAELQELKANPHRNAKGTVIEAGL 678 (1018)
Q Consensus 615 ~~eL~----e~gl~~e~~g~~vpiVeISAktGeGIde------------LleaIl~lael~~lk~~p~r~~~g~ViEs~~ 678 (1018)
..++. ..++ .+++++++||++|+|+++ |++.|..+ .......+.++...|..++.
T Consensus 157 ~~~~~~~~~~~~~------~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~L~~~---~~~~~~~~~p~r~~i~~v~~ 227 (406)
T TIGR02034 157 KKDYLAFAEQLGF------RDVTFIPLSALKGDNVVSRSESMPWYSGPTLLEILETV---EVERDAQDLPLRFPVQYVNR 227 (406)
T ss_pred HHHHHHHHHHcCC------CCccEEEeecccCCCCcccccCCCccchhHHHHHHHhc---CCCCCcCCCCcccceEEEee
Confidence 22222 2222 247899999999999986 44444322 11112233455555555442
Q ss_pred ecCCCcEEEEEeEeeEEecCCEEEEcc--ceeEEEEEeccCCCcccccCCCccEEEe
Q 001745 679 HKSKGPVATFILQNGTLKKGDVVVCGE--AFGKVRALFDDSGNRVDEAGPSIPVQII 733 (1018)
Q Consensus 679 dkg~G~VatglV~~GtLkvGD~Vv~G~--~~gKVRaI~~~~g~~V~eA~pg~~V~V~ 733 (1018)
....+..++|+|.+|+|++||.|.+.+ ..++|++|+.+ +..+++|.||+.|.+.
T Consensus 228 ~~~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~-~~~~~~a~~G~~v~l~ 283 (406)
T TIGR02034 228 PNLDFRGYAGTIASGSVHVGDEVVVLPSGRSSRVARIVTF-DGDLEQARAGQAVTLT 283 (406)
T ss_pred cCCCcEEEEEEEecceeecCCEEEEeCCCcEEEEEEEEEC-CcccCEeCCCCEEEEE
Confidence 222222367999999999999999865 47899999987 5789999999999865
No 34
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.94 E-value=1.1e-25 Score=258.06 Aligned_cols=239 Identities=28% Similarity=0.367 Sum_probs=180.6
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCc---ccccccCCceeeeeeEEEEEe----------c------C--C----ceecE
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTK---VAAAEAGGITQGIGAYKVQVP----------V------D--G----KLQPC 544 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~---v~~~e~gGiTqdIga~~V~i~----------~------d--g----k~~~I 544 (1018)
...+|+++||+|||||||+++|.... .......|+|.++++....+. + + + ..+.+
T Consensus 8 ~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 87 (411)
T PRK04000 8 PEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRV 87 (411)
T ss_pred CcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEE
Confidence 44689999999999999999997532 223345789988775433221 0 0 0 13579
Q ss_pred EEEeCCCccchHHHHHhhhccCCEEEEEEecCCCC-ChhHHHHHHHHHHcCC-CEEEEEecCCCCCCChH-HHHHHHHhc
Q 001745 545 VFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGI-RPQTNEAIAHAKAAGV-PIVIAINKIDKDGANPE-RVMQELSSI 621 (1018)
Q Consensus 545 tfIDTPGHE~F~~~r~rg~~~ADiVILVVDAddGv-~~QT~E~I~~ak~~gI-PIIVVINKiDL~~a~~e-rv~~eL~e~ 621 (1018)
+|||||||+.|...+..++..+|++++|+|++++. ..++.+++..+...++ |+++|+||+|+...+.. ....++...
T Consensus 88 ~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~~~~~~~~~i~~~ 167 (411)
T PRK04000 88 SFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKERALENYEQIKEF 167 (411)
T ss_pred EEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccchhHHHHHHHHHHH
Confidence 99999999999999999999999999999999987 8999999998888887 49999999999653221 112222221
Q ss_pred CCCCCCCCCCCcEEEEecCCCCChHHHHHHHHHHHHHhhhhcCCCCCCcceEEEEeeec--------CCCcEEEEEeEee
Q 001745 622 GLMPEDWGGDIPMVQISALKGEKVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHK--------SKGPVATFILQNG 693 (1018)
Q Consensus 622 gl~~e~~g~~vpiVeISAktGeGIdeLleaIl~lael~~lk~~p~r~~~g~ViEs~~dk--------g~G~VatglV~~G 693 (1018)
....+...++++++||++|.|+++|+++|.... .......+.++...|.+++..+ ++|+|++|+|.+|
T Consensus 168 --l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l--~~~~~~~~~~~r~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G 243 (411)
T PRK04000 168 --VKGTVAENAPIIPVSALHKVNIDALIEAIEEEI--PTPERDLDKPPRMYVARSFDVNKPGTPPEKLKGGVIGGSLIQG 243 (411)
T ss_pred --hccccCCCCeEEEEECCCCcCHHHHHHHHHHhC--CCCCCCCCCCceEEEEeeeeecCCCccccCCcceEEEEEEEeC
Confidence 111122357899999999999999999987532 2223334667788888887443 4678999999999
Q ss_pred EEecCCEEEEccc--------------eeEEEEEeccCCCcccccCCCccEEEe
Q 001745 694 TLKKGDVVVCGEA--------------FGKVRALFDDSGNRVDEAGPSIPVQII 733 (1018)
Q Consensus 694 tLkvGD~Vv~G~~--------------~gKVRaI~~~~g~~V~eA~pg~~V~V~ 733 (1018)
+|++||.|.+.+. .++|++|+.+ ++.+++|.||+.|.|.
T Consensus 244 ~l~~gd~v~i~P~~~~~~~~~~~~~~~~~~VksI~~~-~~~~~~a~~G~~v~i~ 296 (411)
T PRK04000 244 VLKVGDEIEIRPGIKVEEGGKTKWEPITTKIVSLRAG-GEKVEEARPGGLVGVG 296 (411)
T ss_pred EEecCCEEEEcCCcceecccccccccceEEEeEEEEC-CEECCEEcCCCEEEEE
Confidence 9999999999764 3689999987 6889999999999764
No 35
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.94 E-value=1.6e-25 Score=252.17 Aligned_cols=251 Identities=29% Similarity=0.404 Sum_probs=201.3
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCc---------------ccccccCCceeeeeeEEEEEec-CCceecEEEEeCCCc
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKTK---------------VAAAEAGGITQGIGAYKVQVPV-DGKLQPCVFLDTPGH 552 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~~---------------v~~~e~gGiTqdIga~~V~i~~-dgk~~~ItfIDTPGH 552 (1018)
.+..+.+|+-|.|||||||.++|+... .....+.|||+....-.+.+.. ++..+.++|||||||
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 456789999999999999999996321 2234578999887766666654 568899999999999
Q ss_pred cchHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHh-cCCCCCCCCCC
Q 001745 553 EAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSS-IGLMPEDWGGD 631 (1018)
Q Consensus 553 E~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e-~gl~~e~~g~~ 631 (1018)
.+|+....|.+..|.+++|||||+.|+..||......+...+.-+|-|+||+||+.++++++.+++.. .|+...
T Consensus 87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~----- 161 (603)
T COG0481 87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDAS----- 161 (603)
T ss_pred cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcc-----
Confidence 99999999999999999999999999999999999999999999999999999999999999999887 455433
Q ss_pred CcEEEEecCCCCChHHHHHHHHHHHHHhhhhcCCCCCCcceEEEEeeecCCCcEEEEEeEeeEEecCCEEEEcc--ceeE
Q 001745 632 IPMVQISALKGEKVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE--AFGK 709 (1018)
Q Consensus 632 vpiVeISAktGeGIdeLleaIl~lael~~lk~~p~r~~~g~ViEs~~dkg~G~VatglV~~GtLkvGD~Vv~G~--~~gK 709 (1018)
..+.+|||+|.||++++++|.. .++.++.+++.+..+.++++.+|..+|.|+.++|.+|+|++||.|.+-. ..-.
T Consensus 162 -dav~~SAKtG~gI~~iLe~Iv~--~iP~P~g~~~~pLkALifDS~yD~Y~GVv~~vRi~dG~ik~gdki~~m~tg~~y~ 238 (603)
T COG0481 162 -DAVLVSAKTGIGIEDVLEAIVE--KIPPPKGDPDAPLKALIFDSWYDNYLGVVVLVRIFDGTLKKGDKIRMMSTGKEYE 238 (603)
T ss_pred -hheeEecccCCCHHHHHHHHHh--hCCCCCCCCCCcceEEEEeccccccceEEEEEEEeeceecCCCEEEEEecCCEEE
Confidence 4799999999999999999974 4566677889999999999999999999999999999999999987721 1112
Q ss_pred EEEE--eccCCCcccccCCCccEEE-eccCCCC--CCCCeEEE
Q 001745 710 VRAL--FDDSGNRVDEAGPSIPVQI-IGLNGVP--IAGDEFEV 747 (1018)
Q Consensus 710 VRaI--~~~~g~~V~eA~pg~~V~V-~Gl~~vP--~aGd~~~v 747 (1018)
|..+ +.......+...+|+.--+ .|++++- ..||++..
T Consensus 239 V~evGvftP~~~~~~~L~aGeVG~~~a~iK~v~d~~VGDTiT~ 281 (603)
T COG0481 239 VDEVGIFTPKMVKVDELKAGEVGYIIAGIKDVRDARVGDTITL 281 (603)
T ss_pred EEEEeeccCCccccccccCCceeEEEEeeeecccCcccceEec
Confidence 3332 3333444556666665533 3554432 35666553
No 36
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.94 E-value=1.4e-24 Score=263.22 Aligned_cols=304 Identities=25% Similarity=0.276 Sum_probs=230.1
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCccc------------------ccccCCceeeeeeEEEEEecCCceecEEEEeCC
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVA------------------AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTP 550 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~~v~------------------~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTP 550 (1018)
.+.++|+|+||+|||||||+++|...... .....|+|++.....+.+ .++.++|||||
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~----~~~~i~liDTP 83 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFW----KGHRINIIDTP 83 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEE----CCeEEEEEECC
Confidence 35679999999999999999999632110 112467887766555543 45789999999
Q ss_pred CccchHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHhc-CCCC----
Q 001745 551 GHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-GLMP---- 625 (1018)
Q Consensus 551 GHE~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e~-gl~~---- 625 (1018)
||..|...+.++++.+|++|||+|+.+++..|+.+++.++...++|+|+++||+|+..++..++..++... ++..
T Consensus 84 G~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ 163 (689)
T TIGR00484 84 GHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGANFLRVVNQIKQRLGANAVPIQ 163 (689)
T ss_pred CCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceeEE
Confidence 99999999999999999999999999999999999999999999999999999999877766655554431 1100
Q ss_pred ------------------------C--------------------------------------------------C----
Q 001745 626 ------------------------E--------------------------------------------------D---- 627 (1018)
Q Consensus 626 ------------------------e--------------------------------------------------~---- 627 (1018)
. .
T Consensus 164 ipis~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~~~~~~l~~~ 243 (689)
T TIGR00484 164 LPIGAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEGEELTIEEIKNA 243 (689)
T ss_pred eccccCCCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHH
Confidence 0 0
Q ss_pred ------CCCCCcEEEEecCCCCChHHHHHHHHHHHHHhh-----------------hhcCCCCCCcceEEEEeeecCCCc
Q 001745 628 ------WGGDIPMVQISALKGEKVDDLLETIMLVAELQE-----------------LKANPHRNAKGTVIEAGLHKSKGP 684 (1018)
Q Consensus 628 ------~g~~vpiVeISAktGeGIdeLleaIl~lael~~-----------------lk~~p~r~~~g~ViEs~~dkg~G~ 684 (1018)
.+.-+|++..||+++.|+..|++.|.....-.. ...+++.++.+.|+.+..++..|.
T Consensus 244 l~~~~~~~~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~G~ 323 (689)
T TIGR00484 244 IRKGVLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGIDPDTEKEIERKASDDEPFSALAFKVATDPFVGQ 323 (689)
T ss_pred HHHHHhcCCEEEEEeccccCCccHHHHHHHHHHHCCCchhcccccccCCCCCceeeecCCCCCceEEEEEEeeecCCCCe
Confidence 012257888899999999999999986543211 112345677889999999999999
Q ss_pred EEEEEeEeeEEecCCEEEEcc--ceeEEEEE---eccCCCcccccCCCccEEEeccCCCCCCCCeEEEecChHHHHHHHH
Q 001745 685 VATFILQNGTLKKGDVVVCGE--AFGKVRAL---FDDSGNRVDEAGPSIPVQIIGLNGVPIAGDEFEVVDSLDVAREKAE 759 (1018)
Q Consensus 685 VatglV~~GtLkvGD~Vv~G~--~~gKVRaI---~~~~g~~V~eA~pg~~V~V~Gl~~vP~aGd~~~vv~~e~~Ar~~a~ 759 (1018)
++.++|.+|+|+.||.|.... ...+|..| ......+++++.||+.+.|.|+++. ..||.+.-..+
T Consensus 324 i~~~RV~sGtL~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~-~~gdtl~~~~~--------- 393 (689)
T TIGR00484 324 LTFVRVYSGVLKSGSYVKNSRKNKKERVGRLVKMHANNREEIKEVRAGDICAAIGLKDT-TTGDTLCDPKI--------- 393 (689)
T ss_pred EEEEEEEEeEEcCCCEEEeCCCCceEEecceEEeecCCcccccccCCCCEEEEcCCCCC-CCCCEEeCCCC---------
Confidence 999999999999999997532 22344444 4444457999999999999999987 78998842110
Q ss_pred HHHHHHHHHHHhhhcCCCccchhhhHHHhhcCccCCCCcceeeEEEEcCCCccHHHHHHHHHhCCCCCeEEEEEE
Q 001745 760 ARAFSLRNERISAKAGDGKVTLSSLASAVSAGKLSGLDLHQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLL 834 (1018)
Q Consensus 760 ~r~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~vIiKaDv~GSlEAi~~~L~~l~~~~v~i~ii~ 834 (1018)
...+..+ .+..+.+.+.|.+...+..+.|.++|.+|..++..++|..
T Consensus 394 ------------------~~~~~~~----------~~~~Pvl~~~i~p~~~~d~~kL~~aL~~L~~eDpsl~v~~ 440 (689)
T TIGR00484 394 ------------------DVILERM----------EFPEPVISLAVEPKTKADQEKMGIALGKLAEEDPTFRTFT 440 (689)
T ss_pred ------------------ccccCCC----------CCCCceEEEEEEECCcccHHHHHHHHHHHHHhCCEEEEEE
Confidence 0011100 1124789999999999999999999999998888888754
No 37
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.94 E-value=2e-25 Score=259.99 Aligned_cols=240 Identities=23% Similarity=0.249 Sum_probs=170.9
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCccc---------------------------------ccccCCceeeeeeEEEEE
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVA---------------------------------AAEAGGITQGIGAYKVQV 535 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~~v~---------------------------------~~e~gGiTqdIga~~V~i 535 (1018)
+..++|+|+||+|+|||||+++|+..... .....|+|+++.+..+.
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~- 103 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS- 103 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec-
Confidence 45679999999999999999998733110 11235677776654443
Q ss_pred ecCCceecEEEEeCCCccchHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCC-EEEEEecCCCCCCChHH-
Q 001745 536 PVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGANPER- 613 (1018)
Q Consensus 536 ~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIP-IIVVINKiDL~~a~~er- 613 (1018)
..+..++|||||||+.|...+..++..+|++|||+|+.+|+++||.+++..+...+++ +|+++||+|+..++.+.
T Consensus 104 ---~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~~~~~ 180 (474)
T PRK05124 104 ---TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSEEVF 180 (474)
T ss_pred ---cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccchhHHH
Confidence 3456899999999999999899999999999999999999999999999988888864 89999999997554432
Q ss_pred --HHHHHHhcCCCCCCCCCCCcEEEEecCCCCChHHHHHH--------HHHHHHH-hhhhcCCCCCCcceEEEEeeecCC
Q 001745 614 --VMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLET--------IMLVAEL-QELKANPHRNAKGTVIEAGLHKSK 682 (1018)
Q Consensus 614 --v~~eL~e~gl~~e~~g~~vpiVeISAktGeGIdeLlea--------Il~lael-~~lk~~p~r~~~g~ViEs~~dkg~ 682 (1018)
+..++..+.... .+...++++++||++|+||+++-+. |+...+. .......+.++...|..++.....
T Consensus 181 ~~i~~~l~~~~~~~-~~~~~~~iipvSA~~g~ni~~~~~~~~wy~G~tLl~~L~~i~~~~~~~~~p~r~~I~~v~~~~~~ 259 (474)
T PRK05124 181 ERIREDYLTFAEQL-PGNLDIRFVPLSALEGDNVVSQSESMPWYSGPTLLEVLETVDIQRVVDAQPFRFPVQYVNRPNLD 259 (474)
T ss_pred HHHHHHHHHHHHhc-CCCCCceEEEEEeecCCCcccccccccccchhhHHHHHhhcCCCCCCCCCCceeeEEEEEecCCc
Confidence 223332210000 0112578999999999999875321 2221111 111222345566666655432221
Q ss_pred CcEEEEEeEeeEEecCCEEEEccc--eeEEEEEeccCCCcccccCCCccEEEec
Q 001745 683 GPVATFILQNGTLKKGDVVVCGEA--FGKVRALFDDSGNRVDEAGPSIPVQIIG 734 (1018)
Q Consensus 683 G~VatglV~~GtLkvGD~Vv~G~~--~gKVRaI~~~~g~~V~eA~pg~~V~V~G 734 (1018)
...+.|+|.+|+|++||.|++++. .++|++|+.+ +..++.|.||+.|.+..
T Consensus 260 ~~g~~G~V~sG~l~~Gd~v~i~P~~~~~~VksI~~~-~~~v~~A~aG~~V~l~L 312 (474)
T PRK05124 260 FRGYAGTLASGVVKVGDRVKVLPSGKESNVARIVTF-DGDLEEAFAGEAITLVL 312 (474)
T ss_pred ccceEEEEEeEEEecCCEEEEecCCceEEEEEEEEc-CccccCcCCCCEEEEEe
Confidence 122579999999999999999764 6899999987 56899999999998653
No 38
>PRK12739 elongation factor G; Reviewed
Probab=99.93 E-value=1.9e-24 Score=262.00 Aligned_cols=304 Identities=23% Similarity=0.288 Sum_probs=229.9
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCcc------------------cccccCCceeeeeeEEEEEecCCceecEEEEeCC
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKV------------------AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTP 550 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~~v------------------~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTP 550 (1018)
.+.++|+|+||+|||||||+++|..... .....+|+|++.....+.+ .++.++|||||
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~----~~~~i~liDTP 81 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW----KGHRINIIDTP 81 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE----CCEEEEEEcCC
Confidence 3567899999999999999999974211 0113568888776655443 45789999999
Q ss_pred CccchHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHhc-CCCC----
Q 001745 551 GHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-GLMP---- 625 (1018)
Q Consensus 551 GHE~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e~-gl~~---- 625 (1018)
||..|...+.+++..+|++|+|+|+.+++..|+..++.++...++|+|+++||+|+...+..++..++... +...
T Consensus 82 G~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ 161 (691)
T PRK12739 82 GHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGADFFRSVEQIKDRLGANAVPIQ 161 (691)
T ss_pred CHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceeEE
Confidence 99999999999999999999999999999999999999999999999999999999876665555554331 1100
Q ss_pred --------------------CCCC--------------------------------------------------------
Q 001745 626 --------------------EDWG-------------------------------------------------------- 629 (1018)
Q Consensus 626 --------------------e~~g-------------------------------------------------------- 629 (1018)
..|+
T Consensus 162 iPis~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yl~~~~~~~~~l~~ 241 (691)
T PRK12739 162 LPIGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEGEEITEEEIKA 241 (691)
T ss_pred ecccccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhhcCHHHHHHHhccCCCCHHHHHH
Confidence 0111
Q ss_pred ---------CCCcEEEEecCCCCChHHHHHHHHHHHHHhh-----------------hhcCCCCCCcceEEEEeeecCCC
Q 001745 630 ---------GDIPMVQISALKGEKVDDLLETIMLVAELQE-----------------LKANPHRNAKGTVIEAGLHKSKG 683 (1018)
Q Consensus 630 ---------~~vpiVeISAktGeGIdeLleaIl~lael~~-----------------lk~~p~r~~~g~ViEs~~dkg~G 683 (1018)
.-+|++..||.++.|+..|++.|.....-.. ...+++.++.+.|+.+..++..|
T Consensus 242 ~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d~~~G 321 (691)
T PRK12739 242 AIRKATINMEFFPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGINPDTEEEIERPASDDEPFAALAFKIMTDPFVG 321 (691)
T ss_pred HHHHHHHcCCEEEEEeccccCCccHHHHHHHHHHHCCChhhccccccccCCCCcceeeccCCCCCeEEEEEEeeeCCCCC
Confidence 1146888899999999999999986543211 11245667888999999999999
Q ss_pred cEEEEEeEeeEEecCCEEEEcc--ceeEE---EEEeccCCCcccccCCCccEEEeccCCCCCCCCeEEEecChHHHHHHH
Q 001745 684 PVATFILQNGTLKKGDVVVCGE--AFGKV---RALFDDSGNRVDEAGPSIPVQIIGLNGVPIAGDEFEVVDSLDVAREKA 758 (1018)
Q Consensus 684 ~VatglV~~GtLkvGD~Vv~G~--~~gKV---RaI~~~~g~~V~eA~pg~~V~V~Gl~~vP~aGd~~~vv~~e~~Ar~~a 758 (1018)
.++.++|.+|+|+.||.|+... ...+| ..+......+++++.+|+.+.|.|++++ ..||.+.....
T Consensus 322 ~i~~~RV~sGtL~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~-~~gdtl~~~~~-------- 392 (691)
T PRK12739 322 RLTFFRVYSGVLESGSYVLNTTKGKKERIGRLLQMHANKREEIKEVYAGDIAAAVGLKDT-TTGDTLCDEKA-------- 392 (691)
T ss_pred eEEEEEEeeeEEcCCCEEEeCCCCceEEecceEEEecCCcccccccCCCCEEEEeCCCcc-cCCCEEeCCCC--------
Confidence 9999999999999999997532 12344 4444444567999999999999999987 78998842110
Q ss_pred HHHHHHHHHHHHhhhcCCCccchhhhHHHhhcCccCCCCcceeeEEEEcCCCccHHHHHHHHHhCCCCCeEEEEEE
Q 001745 759 EARAFSLRNERISAKAGDGKVTLSSLASAVSAGKLSGLDLHQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLL 834 (1018)
Q Consensus 759 ~~r~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~vIiKaDv~GSlEAi~~~L~~l~~~~v~i~ii~ 834 (1018)
...+..+ .+..+.+.+.|.+-.......|.++|.+|..++..+.|-.
T Consensus 393 -------------------~~~l~~~----------~~~~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDpsl~v~~ 439 (691)
T PRK12739 393 -------------------PIILESM----------EFPEPVISLAVEPKTKADQDKMGLALQKLAEEDPTFRVET 439 (691)
T ss_pred -------------------ccccCCC----------CCCCceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEE
Confidence 0011110 0124678899999999999999999999988888877643
No 39
>PRK00007 elongation factor G; Reviewed
Probab=99.93 E-value=3e-24 Score=260.39 Aligned_cols=304 Identities=24% Similarity=0.297 Sum_probs=229.6
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCcc------------------cccccCCceeeeeeEEEEEecCCceecEEEEeCC
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKV------------------AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTP 550 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~~v------------------~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTP 550 (1018)
.+.++|+|+||+|||||||+++|..... ......|+|++.....+.+ .++.++|+|||
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~----~~~~~~liDTP 83 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW----KDHRINIIDTP 83 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEE----CCeEEEEEeCC
Confidence 3567999999999999999999973111 0113567887765555433 45789999999
Q ss_pred CccchHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHhc-CCC-----
Q 001745 551 GHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-GLM----- 624 (1018)
Q Consensus 551 GHE~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e~-gl~----- 624 (1018)
||..|...+.+++..+|++|||+|+.+|++.|+.+++.++...++|+|+++||+|+...+..++..++.+. +..
T Consensus 84 G~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ 163 (693)
T PRK00007 84 GHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGADFYRVVEQIKDRLGANPVPIQ 163 (693)
T ss_pred CcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCeeeEE
Confidence 99999999999999999999999999999999999999999999999999999999877766655555321 110
Q ss_pred -------------------CCCC---------------------------------------------------------
Q 001745 625 -------------------PEDW--------------------------------------------------------- 628 (1018)
Q Consensus 625 -------------------~e~~--------------------------------------------------------- 628 (1018)
...|
T Consensus 164 ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~l~~~~l~~ 243 (693)
T PRK00007 164 LPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEELMEKYLEGEELTEEEIKA 243 (693)
T ss_pred ecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCcCCCCHHHHHH
Confidence 0000
Q ss_pred --------CCCCcEEEEecCCCCChHHHHHHHHHHHHHhh------------------hhcCCCCCCcceEEEEeeecCC
Q 001745 629 --------GGDIPMVQISALKGEKVDDLLETIMLVAELQE------------------LKANPHRNAKGTVIEAGLHKSK 682 (1018)
Q Consensus 629 --------g~~vpiVeISAktGeGIdeLleaIl~lael~~------------------lk~~p~r~~~g~ViEs~~dkg~ 682 (1018)
+.-+|++..||+++.|+..|++.|.....-.. ...+++.++.+.|+.+..++..
T Consensus 244 ~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~ 323 (693)
T PRK00007 244 ALRKATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGILPDGEEEEVERKASDDEPFSALAFKIMTDPFV 323 (693)
T ss_pred HHHHHHhcCcEEEEEecccccCcCHHHHHHHHHHHCCChhhcccccccCCCccccceeecCCCCCCeEEEEEEeeecCCC
Confidence 02256888899999999999999986543211 0113456778899999999999
Q ss_pred CcEEEEEeEeeEEecCCEEEEcc--ceeEEEEEecc---CCCcccccCCCccEEEeccCCCCCCCCeEEEecChHHHHHH
Q 001745 683 GPVATFILQNGTLKKGDVVVCGE--AFGKVRALFDD---SGNRVDEAGPSIPVQIIGLNGVPIAGDEFEVVDSLDVAREK 757 (1018)
Q Consensus 683 G~VatglV~~GtLkvGD~Vv~G~--~~gKVRaI~~~---~g~~V~eA~pg~~V~V~Gl~~vP~aGd~~~vv~~e~~Ar~~ 757 (1018)
|.++.++|.+|+|+.||.|+... ...+|..|+.. ...+++++.||+.+.|.|++++ ..||.+.-.+.
T Consensus 324 G~ia~~RV~sGtl~~g~~v~~~~~~~~eki~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~-~~GdtL~~~~~------- 395 (693)
T PRK00007 324 GKLTFFRVYSGVLESGSYVLNSTKGKKERIGRILQMHANKREEIKEVRAGDIAAAVGLKDT-TTGDTLCDEKN------- 395 (693)
T ss_pred CcEEEEEEeeeEEcCCCEEEeCCCCceeEeceeEEeccCCcccccccCCCcEEEEeCCccC-CcCCEeeCCCC-------
Confidence 99999999999999999997532 23455555444 4567999999999999999887 68998742110
Q ss_pred HHHHHHHHHHHHHhhhcCCCccchhhhHHHhhcCccCCCCcceeeEEEEcCCCccHHHHHHHHHhCCCCCeEEEEEE
Q 001745 758 AEARAFSLRNERISAKAGDGKVTLSSLASAVSAGKLSGLDLHQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLL 834 (1018)
Q Consensus 758 a~~r~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~vIiKaDv~GSlEAi~~~L~~l~~~~v~i~ii~ 834 (1018)
...+..+ .+..+.+.+.|.+...+....|.++|.+|..++..++|..
T Consensus 396 --------------------~~~l~~~----------~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDpsl~v~~ 442 (693)
T PRK00007 396 --------------------PIILESM----------EFPEPVISVAVEPKTKADQEKMGIALQKLAEEDPSFRVST 442 (693)
T ss_pred --------------------ccccCCC----------CCCCceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEE
Confidence 0001100 1124688999999999999999999999998888888754
No 40
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.93 E-value=1.5e-24 Score=255.19 Aligned_cols=304 Identities=22% Similarity=0.283 Sum_probs=222.6
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCcccc----------------------cccCCceeeeeeEEEEEecCCceecEEE
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAA----------------------AEAGGITQGIGAYKVQVPVDGKLQPCVF 546 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~~v~~----------------------~e~gGiTqdIga~~V~i~~dgk~~~Itf 546 (1018)
.+..+|+|+||+|+|||||+++|+...... ....|+|..... .. +.++++.++|
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~--~~--~~~~~~~inl 83 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSV--MQ--FPYRDCLINL 83 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeee--EE--EEECCEEEEE
Confidence 356799999999999999999997311100 112233333222 22 2345678999
Q ss_pred EeCCCccchHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHhc-CCC-
Q 001745 547 LDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-GLM- 624 (1018)
Q Consensus 547 IDTPGHE~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e~-gl~- 624 (1018)
||||||+.|.....+++..+|++|+|+|+.+++..|+..++..+...++|+|+++||+|+...+..++..++... +..
T Consensus 84 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a~~~~~l~~i~~~l~~~~ 163 (526)
T PRK00741 84 LDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGREPLELLDEIEEVLGIAC 163 (526)
T ss_pred EECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccccCHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999887776555554321 110
Q ss_pred --------------------------C-C----------------------CC---------------------------
Q 001745 625 --------------------------P-E----------------------DW--------------------------- 628 (1018)
Q Consensus 625 --------------------------~-e----------------------~~--------------------------- 628 (1018)
. . .+
T Consensus 164 ~p~~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~~~~~e~~~~~dd~lle~~l~~~~~~~l~~~lel~~~~~~~~~~~~~ 243 (526)
T PRK00741 164 APITWPIGMGKRFKGVYDLYNDEVELYQPGEGHTIQEVEIIKGLDNPELDELLGEDLAEQLREELELVQGASNEFDLEAF 243 (526)
T ss_pred eeEEeccccCCceeEEEEeecceeeecccCCCCcceeeeeccCCCHHHHHHHhcccHHHHHHHHHHhhhhcccchhHHHH
Confidence 0 0 00
Q ss_pred --CCCCcEEEEecCCCCChHHHHHHHHHHHHHhhhhc------C-CCCCCcceEEEEe---eecCCCcEEEEEeEeeEEe
Q 001745 629 --GGDIPMVQISALKGEKVDDLLETIMLVAELQELKA------N-PHRNAKGTVIEAG---LHKSKGPVATFILQNGTLK 696 (1018)
Q Consensus 629 --g~~vpiVeISAktGeGIdeLleaIl~lael~~lk~------~-p~r~~~g~ViEs~---~dkg~G~VatglV~~GtLk 696 (1018)
+.-+|++..||+++.||..|++.|...+....... . .+.++.+.|+.+. .++.+|.++.++|.+|+|+
T Consensus 244 ~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~VFK~~~~m~~~~~grlafvRV~sG~l~ 323 (526)
T PRK00741 244 LAGELTPVFFGSALNNFGVQEFLDAFVEWAPAPQPRQTDEREVEPTEEKFSGFVFKIQANMDPKHRDRIAFVRVCSGKFE 323 (526)
T ss_pred hcCCeEEEEEeecccCcCHHHHHHHHHHHCCCCCcccccceeecCCCCceEEEEEEEEecCCCCcCceEEEEEEeccEEC
Confidence 01168999999999999999999987654321100 1 1235788899887 3468899999999999999
Q ss_pred cCCEEEEccc--ee---EEEEEeccCCCcccccCCCccEEEeccCCCCCCCCeEEEecChHHHHHHHHHHHHHHHHHHHh
Q 001745 697 KGDVVVCGEA--FG---KVRALFDDSGNRVDEAGPSIPVQIIGLNGVPIAGDEFEVVDSLDVAREKAEARAFSLRNERIS 771 (1018)
Q Consensus 697 vGD~Vv~G~~--~g---KVRaI~~~~g~~V~eA~pg~~V~V~Gl~~vP~aGd~~~vv~~e~~Ar~~a~~r~~~~~~~~i~ 771 (1018)
.|+.|+.... .. ++..++..+...+++|.||+.+.|.++.++ ..||.+..-+
T Consensus 324 ~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDIv~v~~l~~~-~~GDTL~~~~---------------------- 380 (526)
T PRK00741 324 KGMKVRHVRTGKDVRISNALTFMAQDREHVEEAYAGDIIGLHNHGTI-QIGDTFTQGE---------------------- 380 (526)
T ss_pred CCCEEEeccCCceEEecceEEEecCCceECceeCCCCEEEEECCCCC-ccCCCccCCC----------------------
Confidence 9999976332 23 444455555567999999999999999887 7999874211
Q ss_pred hhcCCCccchhhhHHHhhcCccCCCCcceeeEEEEcCCCccHHHHHHHHHhCCCCCeEEEEEEcc
Q 001745 772 AKAGDGKVTLSSLASAVSAGKLSGLDLHQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQA 836 (1018)
Q Consensus 772 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~vIiKaDv~GSlEAi~~~L~~l~~~~v~i~ii~~~ 836 (1018)
.+.+.. . ....+.+..-|.+...+..+.+..+|.+|..++ .+++.+..
T Consensus 381 ------~~~~~~---------i-~~~~P~~~~~v~p~~~~d~~kl~~aL~~L~eED-~l~~~~~~ 428 (526)
T PRK00741 381 ------KLKFTG---------I-PNFAPELFRRVRLKNPLKQKQLQKGLVQLSEEG-AVQVFRPL 428 (526)
T ss_pred ------ccccCC---------C-CCCCccEEEEEEECCchhHHHHHHHHHHHhhcC-CeEEEECC
Confidence 000110 0 112467889999999999999999999998887 47766543
No 41
>PRK13351 elongation factor G; Reviewed
Probab=99.93 E-value=4.5e-24 Score=258.58 Aligned_cols=303 Identities=26% Similarity=0.350 Sum_probs=228.6
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCccc------------------ccccCCceeeeeeEEEEEecCCceecEEEEeCCC
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA------------------AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG 551 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v~------------------~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPG 551 (1018)
+.++|+|+||+|||||||+++|...... .....++|.......+. +.++.++||||||
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~----~~~~~i~liDtPG 82 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCD----WDNHRINLIDTPG 82 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEE----ECCEEEEEEECCC
Confidence 4579999999999999999999742110 01134566555444443 2457899999999
Q ss_pred ccchHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHhc-CCCC-----
Q 001745 552 HEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-GLMP----- 625 (1018)
Q Consensus 552 HE~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e~-gl~~----- 625 (1018)
|..|...+.++++.+|++|+|+|++++...++...+..+...++|+++++||+|+.+.+..+...++... +...
T Consensus 83 ~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~ 162 (687)
T PRK13351 83 HIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGADLFKVLEDIEERFGKRPLPLQL 162 (687)
T ss_pred cHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCeEEEEe
Confidence 9999999999999999999999999999999999999999899999999999999887776666665431 1100
Q ss_pred -------------------CCC----------------------------------------------------------
Q 001745 626 -------------------EDW---------------------------------------------------------- 628 (1018)
Q Consensus 626 -------------------e~~---------------------------------------------------------- 628 (1018)
..|
T Consensus 163 P~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~~~l~~~~l~~~ 242 (687)
T PRK13351 163 PIGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDDELLELYLEGEELSAEQLRAP 242 (687)
T ss_pred ccccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHH
Confidence 000
Q ss_pred -------CCCCcEEEEecCCCCChHHHHHHHHHHHHHhhh----------------hcCCCCCCcceEEEEeeecCCCcE
Q 001745 629 -------GGDIPMVQISALKGEKVDDLLETIMLVAELQEL----------------KANPHRNAKGTVIEAGLHKSKGPV 685 (1018)
Q Consensus 629 -------g~~vpiVeISAktGeGIdeLleaIl~lael~~l----------------k~~p~r~~~g~ViEs~~dkg~G~V 685 (1018)
+.-+|++..||++|.|++.|++.|......... ..+++.++.+.|+++..++++|.+
T Consensus 243 ~~~~~~~~~~~PV~~gSA~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d~~~G~i 322 (687)
T PRK13351 243 LREGTRSGHLVPVLFGSALKNIGIEPLLDAVVDYLPSPLEVPPPRGSKDNGKPVKVDPDPEKPLLALVFKVQYDPYAGKL 322 (687)
T ss_pred HHHHHHhCCEEEEEecccCcCccHHHHHHHHHHHCCChhhcccccccCCCCCceeecCCCCCCeEEEEEEeeecCCCceE
Confidence 113568888999999999999999865432210 114566788999999999999999
Q ss_pred EEEEeEeeEEecCCEEEEccc-----eeEEEEEeccCCCcccccCCCccEEEeccCCCCCCCCeEEEecChHHHHHHHHH
Q 001745 686 ATFILQNGTLKKGDVVVCGEA-----FGKVRALFDDSGNRVDEAGPSIPVQIIGLNGVPIAGDEFEVVDSLDVAREKAEA 760 (1018)
Q Consensus 686 atglV~~GtLkvGD~Vv~G~~-----~gKVRaI~~~~g~~V~eA~pg~~V~V~Gl~~vP~aGd~~~vv~~e~~Ar~~a~~ 760 (1018)
+.++|.+|+|+.||.|++... .++|..+.......+++|.||+.+.|.|+++. ..||.+.-..+
T Consensus 323 ~~~RV~sGtl~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~~~aGdI~~i~gl~~~-~~gdtl~~~~~---------- 391 (687)
T PRK13351 323 TYLRVYSGTLRAGSQLYNGTGGKREKVGRLFRLQGNKREEVDRAKAGDIVAVAGLKEL-ETGDTLHDSAD---------- 391 (687)
T ss_pred EEEEEeEEEEcCCCEEEeCCCCCceEeeeEEEEccCCeeECCccCCCCEEEEECcccC-ccCCEEeCCCC----------
Confidence 999999999999999987432 33555555555677999999999999999987 68998842211
Q ss_pred HHHHHHHHHHhhhcCCCccchhhhHHHhhcCccCCCCcceeeEEEEcCCCccHHHHHHHHHhCCCCCeEEEEEE
Q 001745 761 RAFSLRNERISAKAGDGKVTLSSLASAVSAGKLSGLDLHQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLL 834 (1018)
Q Consensus 761 r~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~vIiKaDv~GSlEAi~~~L~~l~~~~v~i~ii~ 834 (1018)
...+..+ ....+.+.+.|.+......+.|.++|.+|..++..+.|-.
T Consensus 392 -----------------~~~~~~~----------~~~~pv~~~~Iep~~~~d~~kL~~aL~~L~~eDpsl~v~~ 438 (687)
T PRK13351 392 -----------------PVLLELL----------TFPEPVVSLAVEPERRGDEQKLAEALEKLVWEDPSLRVEE 438 (687)
T ss_pred -----------------ccccCCC----------CCCCccEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEE
Confidence 0000000 0123578889999999999999999999988887777643
No 42
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.92 E-value=1.3e-24 Score=261.00 Aligned_cols=242 Identities=25% Similarity=0.318 Sum_probs=172.8
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccc---------------------------------cccCCceeeeeeEEEEEe
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAA---------------------------------AEAGGITQGIGAYKVQVP 536 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v~~---------------------------------~e~gGiTqdIga~~V~i~ 536 (1018)
...+|+|+||+|||||||+++|+...... ....|+|++.++..+.
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~-- 100 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA-- 100 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc--
Confidence 34579999999999999999997432111 1134667666554433
Q ss_pred cCCceecEEEEeCCCccchHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCC-CEEEEEecCCCCCCChHH--
Q 001745 537 VDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGV-PIVIAINKIDKDGANPER-- 613 (1018)
Q Consensus 537 ~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gI-PIIVVINKiDL~~a~~er-- 613 (1018)
..+..++|+|||||+.|...+..++..+|++|||+|+.+|+++|+.+++..+...++ ++||++||+|+..++.++
T Consensus 101 --~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~~~~ 178 (632)
T PRK05506 101 --TPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQEVFD 178 (632)
T ss_pred --cCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchhHHHH
Confidence 345679999999999999988999999999999999999999999999999988886 488999999997544433
Q ss_pred -HHHHHH----hcCCCCCCCCCCCcEEEEecCCCCChHH------------HHHHHHHHHHHhhhhcCCCCCCcceEEEE
Q 001745 614 -VMQELS----SIGLMPEDWGGDIPMVQISALKGEKVDD------------LLETIMLVAELQELKANPHRNAKGTVIEA 676 (1018)
Q Consensus 614 -v~~eL~----e~gl~~e~~g~~vpiVeISAktGeGIde------------LleaIl~lael~~lk~~p~r~~~g~ViEs 676 (1018)
+..++. ..++ .+++++++||++|.|+++ |++.|..+ .......+.++...|..+
T Consensus 179 ~i~~~i~~~~~~~~~------~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~l~~~---~~~~~~~~~p~r~~i~~v 249 (632)
T PRK05506 179 EIVADYRAFAAKLGL------HDVTFIPISALKGDNVVTRSARMPWYEGPSLLEHLETV---EIASDRNLKDFRFPVQYV 249 (632)
T ss_pred HHHHHHHHHHHHcCC------CCccEEEEecccCCCccccccCCCcccHhHHHHHHhcC---CCCCCcCCCCceeeEEEE
Confidence 223332 2232 247899999999999984 44444322 111111344555655555
Q ss_pred eeecCCCcEEEEEeEeeEEecCCEEEEcc--ceeEEEEEeccCCCcccccCCCccEEEecc--CCCCCCCCeEE
Q 001745 677 GLHKSKGPVATFILQNGTLKKGDVVVCGE--AFGKVRALFDDSGNRVDEAGPSIPVQIIGL--NGVPIAGDEFE 746 (1018)
Q Consensus 677 ~~dkg~G~VatglV~~GtLkvGD~Vv~G~--~~gKVRaI~~~~g~~V~eA~pg~~V~V~Gl--~~vP~aGd~~~ 746 (1018)
+.....+..+.|+|.+|+|++||.|++++ ..++|++|+.+ ++.+++|.||+.|.+..- .++ ..|+.+.
T Consensus 250 ~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~-~~~~~~a~aG~~v~i~l~~~~~i-~rG~vL~ 321 (632)
T PRK05506 250 NRPNLDFRGFAGTVASGVVRPGDEVVVLPSGKTSRVKRIVTP-DGDLDEAFAGQAVTLTLADEIDI-SRGDMLA 321 (632)
T ss_pred EecCCCceEEEEEEecceeecCCEEEEcCCCceEEEEEEEEC-CceeCEEcCCCeEEEEecCcccc-CCccEEe
Confidence 43211122257999999999999999965 47899999987 677999999999987532 222 3565544
No 43
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.92 E-value=1.3e-23 Score=247.53 Aligned_cols=303 Identities=19% Similarity=0.242 Sum_probs=222.0
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcC-ccc-----c----------------cccCCceeeeeeEEEEEecCCceecEEE
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKT-KVA-----A----------------AEAGGITQGIGAYKVQVPVDGKLQPCVF 546 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~-~v~-----~----------------~e~gGiTqdIga~~V~i~~dgk~~~Itf 546 (1018)
.+..+|+|+||+|+|||||+++|+.. ... + ....|+|.... ...++++++.++|
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~----~~~~~~~~~~inl 84 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTS----VMQFPYRDCLVNL 84 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEE----EEEEeeCCeEEEE
Confidence 46789999999999999999998631 111 0 01123333222 2223446688999
Q ss_pred EeCCCccchHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHhc-CCC-
Q 001745 547 LDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-GLM- 624 (1018)
Q Consensus 547 IDTPGHE~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e~-gl~- 624 (1018)
||||||..|.....+++..+|++|+|+|+.+++..++..+++.+...++|+|+++||+|+...+.+++..++... +..
T Consensus 85 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~~~~~~ll~~i~~~l~~~~ 164 (527)
T TIGR00503 85 LDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDIRDPLELLDEVENELKINC 164 (527)
T ss_pred EECCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccCCCHHHHHHHHHHHhCCCC
Confidence 999999999998889999999999999999999999999999998889999999999999877766665544431 100
Q ss_pred --------------------------C-CC--------------------------------------------------
Q 001745 625 --------------------------P-ED-------------------------------------------------- 627 (1018)
Q Consensus 625 --------------------------~-e~-------------------------------------------------- 627 (1018)
. ..
T Consensus 165 ~~~~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~le~~~~~~~~~~~~~~ 244 (527)
T TIGR00503 165 APITWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQLRDELELVEGASNEFDLAAF 244 (527)
T ss_pred ccEEEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHHHHHHHHHhhhccccCHHHH
Confidence 0 00
Q ss_pred -CCCCCcEEEEecCCCCChHHHHHHHHHHHHHhhhhc-------CCCCCCcceEEEEee--e-cCCCcEEEEEeEeeEEe
Q 001745 628 -WGGDIPMVQISALKGEKVDDLLETIMLVAELQELKA-------NPHRNAKGTVIEAGL--H-KSKGPVATFILQNGTLK 696 (1018)
Q Consensus 628 -~g~~vpiVeISAktGeGIdeLleaIl~lael~~lk~-------~p~r~~~g~ViEs~~--d-kg~G~VatglV~~GtLk 696 (1018)
-+.-+|+++.||.++.||..|++.|...+.-..... ....++.+.|+.+.. + +.+|.++.++|.+|+|+
T Consensus 245 ~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~PsP~~~~~~~~~~~~~~~~~~~~VFK~~~~mdp~~~griaf~RV~sG~l~ 324 (527)
T TIGR00503 245 HGGEMTPVFFGTALGNFGVDHFLDGLLQWAPKPEARQSDTRTVEPTEEKFSGFVFKIQANMDPKHRDRVAFMRVVSGKYE 324 (527)
T ss_pred hcCCeeEEEEeecccCccHHHHHHHHHHHCCCCccccCCceecCCCCCCeeEEEEEEEeccCcccCceEEEEEEeeeEEc
Confidence 011247799999999999999999987654321110 123457889999976 6 57999999999999999
Q ss_pred cCCEEEEcc--ceeEEEEEecc---CCCcccccCCCccEEEeccCCCCCCCCeEEEecChHHHHHHHHHHHHHHHHHHHh
Q 001745 697 KGDVVVCGE--AFGKVRALFDD---SGNRVDEAGPSIPVQIIGLNGVPIAGDEFEVVDSLDVAREKAEARAFSLRNERIS 771 (1018)
Q Consensus 697 vGD~Vv~G~--~~gKVRaI~~~---~g~~V~eA~pg~~V~V~Gl~~vP~aGd~~~vv~~e~~Ar~~a~~r~~~~~~~~i~ 771 (1018)
.|+.|+... ..-||..++.. +...+++|.||+.+.+.++..+ ..||.+.. .+
T Consensus 325 ~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDI~~~~~~~~~-~~GDtl~~--~~-------------------- 381 (527)
T TIGR00503 325 KGMKLKHVRTGKDVVISDALTFMAGDREHVEEAYAGDIIGLHNHGTI-QIGDTFTQ--GE-------------------- 381 (527)
T ss_pred CCCEEEecCCCCcEEecchhhhhcCCceEcceeCCCCEEEEECCCCc-ccCCEecC--CC--------------------
Confidence 999997632 23455555443 4456999999999999999887 78998742 11
Q ss_pred hhcCCCccchhhhHHHhhcCccCCCCcceeeEEEEcCCCccHHHHHHHHHhCCCCCeEEEEEEc
Q 001745 772 AKAGDGKVTLSSLASAVSAGKLSGLDLHQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQ 835 (1018)
Q Consensus 772 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~vIiKaDv~GSlEAi~~~L~~l~~~~v~i~ii~~ 835 (1018)
.+.+..+ ....+.+..-|.+...+..+.+..+|.+|..++. +++.+.
T Consensus 382 ------~~~~~~i----------~~~~P~~~~~v~~~~~~d~~kl~~aL~~L~eED~-l~v~~~ 428 (527)
T TIGR00503 382 ------KIKFTGI----------PNFAPELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQVFRP 428 (527)
T ss_pred ------ceeecCC----------CCCCcceEEEEEECChhhHHHHHHHHHHHHhhCC-eEEEEc
Confidence 0011100 1124678889999999999999999999988775 776543
No 44
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.92 E-value=7.4e-24 Score=258.30 Aligned_cols=309 Identities=26% Similarity=0.308 Sum_probs=222.5
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCccc----------------ccccCCceeeeeeEEEEEecCCceecEEEEeCCCc
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVA----------------AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH 552 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~~v~----------------~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGH 552 (1018)
.+.++|+|+||+|||||||+++|+..... .....|+|++.....+.+.+.+.++.++|+|||||
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 46789999999999999999999742211 12234677666555554444556788999999999
Q ss_pred cchHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCC----hHHHHHHHH---------
Q 001745 553 EAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN----PERVMQELS--------- 619 (1018)
Q Consensus 553 E~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~----~erv~~eL~--------- 619 (1018)
.+|...+.+++..+|++|+|+|+.+|+..|+..++..+...++|+|+++||+|+...+ .+.+...+.
T Consensus 98 ~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~~~~~~~~~~~~~~~~~~~~~e~~~~ 177 (731)
T PRK07560 98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRLIKELKLTPQEMQQRLLKIIKDVNKL 177 (731)
T ss_pred cChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhhcccccCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888899999999999986432 222211111
Q ss_pred --hcCC--CCCCC---CCCCcEEEEecCCCCChH----------------------------------HHHHHHHHHHHH
Q 001745 620 --SIGL--MPEDW---GGDIPMVQISALKGEKVD----------------------------------DLLETIMLVAEL 658 (1018)
Q Consensus 620 --e~gl--~~e~~---g~~vpiVeISAktGeGId----------------------------------eLleaIl~lael 658 (1018)
.+.- ....| ..+-.++..||+.+.++. .|++.|.....-
T Consensus 178 l~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~l~~~~Pv~~~Lld~I~~~lPs 257 (731)
T PRK07560 178 IKGMAPEEFKEKWKVDVEDGTVAFGSALYNWAISVPMMQKTGIKFKDIIDYYEKGKQKELAEKAPLHEVVLDMVVKHLPN 257 (731)
T ss_pred HHHhhhhhhhcceeecCCCCcEeeeecccccceeHHHHHHhCCCHHHHHHHHhcCCHHHHHhhccchhHHHHHHHHhCCC
Confidence 1100 00011 112346778999887775 566666543221
Q ss_pred hh-----------------------hhcCCCCCCcceEEEEeeecCCCcEEEEEeEeeEEecCCEEEEcc--ceeEEEEE
Q 001745 659 QE-----------------------LKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE--AFGKVRAL 713 (1018)
Q Consensus 659 ~~-----------------------lk~~p~r~~~g~ViEs~~dkg~G~VatglV~~GtLkvGD~Vv~G~--~~gKVRaI 713 (1018)
.. ...+++.++.+.|+.+..++.+|.+++++|.+|+|++||.|+.-. ...+|+.|
T Consensus 258 P~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~va~~RV~sGtL~~Gd~v~~~~~~~~~~v~~i 337 (731)
T PRK07560 258 PIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAGEVATGRVFSGTLRKGQEVYLVGAKKKNRVQQV 337 (731)
T ss_pred hhhhhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcCCCCeEEEEEEEEeEEcCCCEEEEcCCCCceEehee
Confidence 10 011344567788999999999999999999999999999997632 35678888
Q ss_pred eccC---CCcccccCCCccEEEeccCCCCCCCCeEEEecChHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhHHHhhc
Q 001745 714 FDDS---GNRVDEAGPSIPVQIIGLNGVPIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGKVTLSSLASAVSA 790 (1018)
Q Consensus 714 ~~~~---g~~V~eA~pg~~V~V~Gl~~vP~aGd~~~vv~~e~~Ar~~a~~r~~~~~~~~i~~~~~~~~~~l~~~~~~~~~ 790 (1018)
+... ..++++|.||+.+.|.|+++. ..|+.+..... ...+..+
T Consensus 338 ~~~~g~~~~~v~~a~AGdIv~i~gl~~~-~~GdtL~~~~~---------------------------~~~~~~~------ 383 (731)
T PRK07560 338 GIYMGPEREEVEEIPAGNIAAVTGLKDA-RAGETVVSVED---------------------------MTPFESL------ 383 (731)
T ss_pred hhhhcCCCceeeeECCCCEEEEEccccc-ccCCEEeCCCc---------------------------ccccccc------
Confidence 7654 356999999999999999877 57988743210 0001100
Q ss_pred CccCCCCcceeeEEEEcCCCccHHHHHHHHHhCCCCCeEEEEEE
Q 001745 791 GKLSGLDLHQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLL 834 (1018)
Q Consensus 791 ~~~~~~~~~~l~vIiKaDv~GSlEAi~~~L~~l~~~~v~i~ii~ 834 (1018)
..+..+.+.+-|.+...+..+.|.++|.+|..++..++|..
T Consensus 384 ---~~~p~Pv~~~aI~p~~~~d~~kL~~aL~~L~~eDPsl~v~~ 424 (731)
T PRK07560 384 ---KHISEPVVTVAIEAKNPKDLPKLIEVLRQLAKEDPTLVVKI 424 (731)
T ss_pred ---ccCCCCeEEEEEEECCHHHHHHHHHHHHHHHhhCCcEEEEE
Confidence 00124688999999999999999999999998888887754
No 45
>PRK12740 elongation factor G; Reviewed
Probab=99.92 E-value=1.9e-23 Score=252.42 Aligned_cols=296 Identities=28% Similarity=0.351 Sum_probs=224.9
Q ss_pred EeCCCCCHHHHHHHHHcCccc------------------ccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHH
Q 001745 497 MGHVDHGKTTLLDHIRKTKVA------------------AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAM 558 (1018)
Q Consensus 497 mGhvdvGKTTLLnrL~~~~v~------------------~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~ 558 (1018)
+||+|||||||+++|...... .....|+|.+.....+.+ .++.++|||||||..|...
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~----~~~~i~liDtPG~~~~~~~ 76 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW----KGHKINLIDTPGHVDFTGE 76 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE----CCEEEEEEECCCcHHHHHH
Confidence 699999999999999532111 122457776655554443 4578999999999999999
Q ss_pred HHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHhc-CCCC------------
Q 001745 559 RARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-GLMP------------ 625 (1018)
Q Consensus 559 r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e~-gl~~------------ 625 (1018)
+.+++..+|++|+|+|++++...++...+..+...++|+|+++||+|+...+..++..++.+. +...
T Consensus 77 ~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~l~~~l~~~~~~~~~p~~~~~~ 156 (668)
T PRK12740 77 VERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGADFFRVLAQLQEKLGAPVVPLQLPIGEGDD 156 (668)
T ss_pred HHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCceeEEecccCCCC
Confidence 999999999999999999999999999999998899999999999999877666665555441 1100
Q ss_pred -----------------------------------------------------------CC---------------CCCC
Q 001745 626 -----------------------------------------------------------ED---------------WGGD 631 (1018)
Q Consensus 626 -----------------------------------------------------------e~---------------~g~~ 631 (1018)
.. .+.-
T Consensus 157 ~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~~~l~~~~~~~~~~~~~~~~~~ 236 (668)
T PRK12740 157 FTGVVDLLSMKAYRYDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEELSEEEIKAGLRKATLAGEI 236 (668)
T ss_pred ceEEEECccceEEEecCCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCE
Confidence 00 0112
Q ss_pred CcEEEEecCCCCChHHHHHHHHHHHHHhh---------------hhcCCCCCCcceEEEEeeecCCCcEEEEEeEeeEEe
Q 001745 632 IPMVQISALKGEKVDDLLETIMLVAELQE---------------LKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLK 696 (1018)
Q Consensus 632 vpiVeISAktGeGIdeLleaIl~lael~~---------------lk~~p~r~~~g~ViEs~~dkg~G~VatglV~~GtLk 696 (1018)
+|++..||++|.|++.|++.|........ ...+++.++.+.|+++..++..|.++.++|.+|+|+
T Consensus 237 ~Pv~~gSA~~~~Gv~~LLd~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~l~a~v~k~~~~~~~G~i~~~RV~sG~L~ 316 (668)
T PRK12740 237 VPVFCGSALKNKGVQRLLDAVVDYLPSPLEVPPVDGEDGEEGAELAPDPDGPLVALVFKTMDDPFVGKLSLVRVYSGTLK 316 (668)
T ss_pred EEEEeccccCCccHHHHHHHHHHHCCChhhcccccCCCCccccccccCCCCCeEEEEEEeeecCCCCcEEEEEEeeeEEc
Confidence 57899999999999999999986533221 112456677889999999999999999999999999
Q ss_pred cCCEEEEccc-----eeEEEEEeccCCCcccccCCCccEEEeccCCCCCCCCeEEEecChHHHHHHHHHHHHHHHHHHHh
Q 001745 697 KGDVVVCGEA-----FGKVRALFDDSGNRVDEAGPSIPVQIIGLNGVPIAGDEFEVVDSLDVAREKAEARAFSLRNERIS 771 (1018)
Q Consensus 697 vGD~Vv~G~~-----~gKVRaI~~~~g~~V~eA~pg~~V~V~Gl~~vP~aGd~~~vv~~e~~Ar~~a~~r~~~~~~~~i~ 771 (1018)
+||.|+++.. .++|..+...+..++++|.||+.+.|.|++.+ ..|+.+.-..+.
T Consensus 317 ~g~~v~~~~~~~~~~i~~l~~l~g~~~~~v~~~~aGdI~~i~gl~~~-~~Gdtl~~~~~~-------------------- 375 (668)
T PRK12740 317 KGDTLYNSGTGKKERVGRLYRMHGKQREEVDEAVAGDIVAVAKLKDA-ATGDTLCDKGDP-------------------- 375 (668)
T ss_pred CCCEEEeCCCCCcEEecceeeecCCCccccCccCCCCEEEEeccCcc-CCCCEEeCCCCc--------------------
Confidence 9999988643 33555555555678999999999999999876 789887422110
Q ss_pred hhcCCCccchhhhHHHhhcCccCCCCcceeeEEEEcCCCccHHHHHHHHHhCCCCCeEEEEEE
Q 001745 772 AKAGDGKVTLSSLASAVSAGKLSGLDLHQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLL 834 (1018)
Q Consensus 772 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~vIiKaDv~GSlEAi~~~L~~l~~~~v~i~ii~ 834 (1018)
..+..+ ....+.+.+.|.+...+..+.|.++|.+|..++..++|..
T Consensus 376 -------~~~~~~----------~~~~P~~~~~i~p~~~~d~~~L~~aL~~l~~~Dpsl~v~~ 421 (668)
T PRK12740 376 -------ILLEPM----------EFPEPVISLAIEPKDKGDEEKLSEALGKLAEEDPTLRVER 421 (668)
T ss_pred -------cccCCC----------CCCCcceEEEEEECCcchHHHHHHHHHHHHHhCCeEEEEE
Confidence 001100 0124689999999999999999999999998888888765
No 46
>PF11987 IF-2: Translation-initiation factor 2; InterPro: IPR023115 Initiation factor 2 (IF-2) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 kDa that contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Some members of this group undergo protein self splicing that involves a post-translational excision of the intein followed by peptide ligation. The function of IF-2 in facilitating the proper binding of initiator methionyl-tRNA to the ribosomal P site appears to be universally conserved, with an IF-2 homologue (aIF-2) present in archaea bacteria [] Methanopyrus kandleri. This entry represents the domain 3 of IF-2. It consists of a alpha/beta/alpha structure with a core formed by a parallel beta-sheet of 4 strands [].; PDB: 1Z9B_A 1ZO1_I 3IZY_P 1G7R_A 1G7S_A 1G7T_A.
Probab=99.92 E-value=7e-26 Score=215.79 Aligned_cols=96 Identities=47% Similarity=0.773 Sum_probs=89.6
Q ss_pred CcceeeEEEEcCCCccHHHHHHHHHhCCCCCeEEEEEEcccCCCCHhhHHHHHhcCCEEEEecCCCChhHHhHHHhcCce
Q 001745 797 DLHQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVE 876 (1018)
Q Consensus 797 ~~~~l~vIiKaDv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG~ItesDV~lA~as~aiIi~FnV~~~~~a~~~A~~~~V~ 876 (1018)
+.+++++|||||++||+|||.++|.++++++|+++|++++||+||++||.+|.+++|+||||||+++++++++|++.||+
T Consensus 13 ~~~~~~iIiKaD~~GslEAi~~~l~~~~~~~v~i~Ii~~~VG~it~sDI~~A~~~~a~Ii~FNv~~~~~~~~~a~~~~V~ 92 (108)
T PF11987_consen 13 EIKELNIIIKADVQGSLEAIKNSLEKLSNDEVKIKIIHAGVGPITESDIELASASNAIIIAFNVKVSPDAKDLAKKSGVK 92 (108)
T ss_dssp CSSCCEEEEEESSHHHHHHHHHHHCCTT-SSSCEEESEEEESSBHHHHHHHHHHHC-EEEESSS-B-HHHHHCHHSSTSE
T ss_pred CCceeeEEEEECchhhHHHHHHHHHhcccccccccEEEeeCCCCCHHHHHHHHhhCCEEEEeeCCCCHHHHHHHHHcCCE
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEechHhHHHHHHHH
Q 001745 877 IRLYRVIYDLIDDMRN 892 (1018)
Q Consensus 877 I~~~~IIY~Liddik~ 892 (1018)
|+.|+|||+|+||+++
T Consensus 93 I~~~~VIY~L~ddik~ 108 (108)
T PF11987_consen 93 IRSHNVIYDLIDDIKK 108 (108)
T ss_dssp EEESTTCCHHHHHHHH
T ss_pred EEEeCHHHHHHHHhhC
Confidence 9999999999999985
No 47
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=3.2e-24 Score=230.64 Aligned_cols=233 Identities=30% Similarity=0.377 Sum_probs=173.7
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcC----------------cccccccCCceeeeeeEEEEEecCCceecEEEEeCCCcc
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKT----------------KVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHE 553 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~----------------~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE 553 (1018)
...+|+.+||+|||||||..+|... +.....+.|||+. ..++++ +..++.+-++|+|||.
T Consensus 11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIn--tahvey--et~~rhyahVDcPGHa 86 (394)
T COG0050 11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITIN--TAHVEY--ETANRHYAHVDCPGHA 86 (394)
T ss_pred CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceec--cceeEE--ecCCceEEeccCCChH
Confidence 3457999999999999999998631 1122345688855 344444 3455789999999999
Q ss_pred chHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCC-EEEEEecCCCCCC-Ch-----HHHHHHHHhcCCCCC
Q 001745 554 AFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGA-NP-----ERVMQELSSIGLMPE 626 (1018)
Q Consensus 554 ~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIP-IIVVINKiDL~~a-~~-----erv~~eL~e~gl~~e 626 (1018)
+|.+++..++.+.|.+|||++++||.||||+||+..++..++| +++++||+|+.+. .. .++...|.++++.
T Consensus 87 DYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~-- 164 (394)
T COG0050 87 DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFP-- 164 (394)
T ss_pred HHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCC--
Confidence 9999999999999999999999999999999999999999999 8999999999752 11 2344556666653
Q ss_pred CCCCCCcEEEEecCCC-CC-------hHHHHHHHHHHHHHhhhhcCCCCCCcceEEEEeeecCCCcEEEEEeEeeEEecC
Q 001745 627 DWGGDIPMVQISALKG-EK-------VDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKG 698 (1018)
Q Consensus 627 ~~g~~vpiVeISAktG-eG-------IdeLleaIl~lael~~lk~~p~r~~~g~ViEs~~dkg~G~VatglV~~GtLkvG 698 (1018)
+.+.|++.-||+.. +| |.+|++++... +..+....+.++...|-+++...|+|+++||+|.+|+|++|
T Consensus 165 --gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~y--ip~Per~~dkPflmpvEdvfsIsgrgtvvtGrVeRG~lkvg 240 (394)
T COG0050 165 --GDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSY--IPTPERDIDKPFLMPVEDVFSISGRGTVVTGRVERGILKVG 240 (394)
T ss_pred --CCCcceeechhhhhhcCCcchHHHHHHHHHHHHhc--CCCCCCcccccccccceeeEEEcCceeEEEEEEeeeeeccC
Confidence 34689999998753 22 34455444321 12223344567888888889899999999999999999999
Q ss_pred CEEEE-ccc---eeEEEEEeccCCCcccccCCCccEEEe
Q 001745 699 DVVVC-GEA---FGKVRALFDDSGNRVDEAGPSIPVQII 733 (1018)
Q Consensus 699 D~Vv~-G~~---~gKVRaI~~~~g~~V~eA~pg~~V~V~ 733 (1018)
|.+.+ |-. ...|..+.+. .+.++++.+|++|-++
T Consensus 241 ~eveivG~~~~~kttvtgvemf-rk~ld~~~AGdnvg~l 278 (394)
T COG0050 241 EEVEIVGIKETQKTTVTGVEMF-RKLLDEGQAGDNVGVL 278 (394)
T ss_pred CEEEEecccccceeEEEhHHHH-HHHHhccccCCCcceE
Confidence 98865 432 3445555444 3567888888887543
No 48
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=3.6e-23 Score=248.76 Aligned_cols=306 Identities=27% Similarity=0.318 Sum_probs=229.7
Q ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHcCccc------------------ccccCCceeeeeeEEEEEecCCceecEEEEeC
Q 001745 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVA------------------AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDT 549 (1018)
Q Consensus 488 ~~r~pkVaImGhvdvGKTTLLnrL~~~~v~------------------~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDT 549 (1018)
..+.++|+|+||.|||||||.++|+..... ....+|+|+...+.++.+ .+ .+.|+||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~--~~-~~~iNlIDT 83 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFW--KG-DYRINLIDT 83 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEE--cC-ceEEEEeCC
Confidence 456789999999999999999999732111 123457886655544443 32 589999999
Q ss_pred CCccchHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHhc--------
Q 001745 550 PGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-------- 621 (1018)
Q Consensus 550 PGHE~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e~-------- 621 (1018)
|||-+|+....+.++.+|++|+|+|+.+|+++||...|+++...++|.|+++||||+..++......++...
T Consensus 84 PGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~~~~~~v 163 (697)
T COG0480 84 PGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGADFYLVVEQLKERLGANPVPV 163 (697)
T ss_pred CCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECccccccChhhhHHHHHHHhCCCceee
Confidence 999999999999999999999999999999999999999999999999999999999876654444333221
Q ss_pred -----------C-----------CC---C----------------------------------CCCC-------------
Q 001745 622 -----------G-----------LM---P----------------------------------EDWG------------- 629 (1018)
Q Consensus 622 -----------g-----------l~---~----------------------------------e~~g------------- 629 (1018)
+ +. . ....
T Consensus 164 ~~pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g~e~~~~~i~~~i 243 (697)
T COG0480 164 QLPIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEEPTEEEIKKAL 243 (697)
T ss_pred eccccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhcCHHHHHHHhcCCCccHHHHHHHH
Confidence 0 00 0 0001
Q ss_pred -------CCCcEEEEecCCCCChHHHHHHHHHHHHHhh------------------hhcCCCCCCcceEEEEeeecCCCc
Q 001745 630 -------GDIPMVQISALKGEKVDDLLETIMLVAELQE------------------LKANPHRNAKGTVIEAGLHKSKGP 684 (1018)
Q Consensus 630 -------~~vpiVeISAktGeGIdeLleaIl~lael~~------------------lk~~p~r~~~g~ViEs~~dkg~G~ 684 (1018)
...|++.-||.++.|+..|++++.....-.. .....+.++.+.++.+..+...|.
T Consensus 244 ~~~~~~~~~~pvl~gsa~kn~gv~~lLdav~~~lPsP~e~~~~~g~~~~~~~~~~~~~~~~e~p~~a~vfKi~~d~~~g~ 323 (697)
T COG0480 244 RKGTIAGKIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLRKASDEGPLSALVFKIMTDPFVGK 323 (697)
T ss_pred HHhhhccceeeEEeeecccCCcHHHHHHHHHHHCCChhhcccccccCCccccchhcccCCCCCceEEEEEEeEecCCCCe
Confidence 1468889999999999999999986543210 012335678888999999999999
Q ss_pred EEEEEeEeeEEecCCEEEEccc--eeEEEEEeccCC---CcccccCCCccEEEeccCCCCCCCCeEEEecChHHHHHHHH
Q 001745 685 VATFILQNGTLKKGDVVVCGEA--FGKVRALFDDSG---NRVDEAGPSIPVQIIGLNGVPIAGDEFEVVDSLDVAREKAE 759 (1018)
Q Consensus 685 VatglV~~GtLkvGD~Vv~G~~--~gKVRaI~~~~g---~~V~eA~pg~~V~V~Gl~~vP~aGd~~~vv~~e~~Ar~~a~ 759 (1018)
+..++|.+|+|+.|+.++.+.. ..||-.|+..++ ..++++.+|+.+.+.||++. .+||.+...+ ..
T Consensus 324 l~~~RvysGtl~~G~~v~n~~~~~~erv~~l~~~~~~~~~~v~~~~AG~I~a~~Gl~~~-~tGdTl~~~~-~~------- 394 (697)
T COG0480 324 LTFVRVYSGTLKSGSEVLNSTKGKKERVGRLLLMHGNEREEVDEVPAGDIVALVGLKDA-TTGDTLCDEN-KP------- 394 (697)
T ss_pred EEEEEEeccEEcCCCEEEeCCCCccEEEEEEEEccCCceeecccccCccEEEEEccccc-ccCCeeecCC-Cc-------
Confidence 9999999999999999888654 356666655544 45899999999999999998 7999886543 10
Q ss_pred HHHHHHHHHHHhhhcCCCccchhhhHHHhhcCccCCCCcceeeEEEEcCCCccHHHHHHHHHhCCCCCeEEEEEE
Q 001745 760 ARAFSLRNERISAKAGDGKVTLSSLASAVSAGKLSGLDLHQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLL 834 (1018)
Q Consensus 760 ~r~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~vIiKaDv~GSlEAi~~~L~~l~~~~v~i~ii~ 834 (1018)
+.++.+ .+..+.+.+-|.+..-..++.+.++|.+|..++..+++..
T Consensus 395 -------------------v~~~~~----------~~pePVi~vavepk~~~d~~Kl~~aL~~l~~eDPt~~v~~ 440 (697)
T COG0480 395 -------------------VILESM----------EFPEPVISVAVEPKTKADQEKLSEALNKLAEEDPTFRVET 440 (697)
T ss_pred -------------------cccccc----------cCCCceEEEEEeECChhhHHHHHHHHHHHHhhCCceEEEE
Confidence 111111 0113577788888888889999999998887776666554
No 49
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.91 E-value=4.7e-24 Score=234.07 Aligned_cols=250 Identities=26% Similarity=0.321 Sum_probs=182.2
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCccc---------------------------------ccccCCceeeeeeEEEEE
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVA---------------------------------AAEAGGITQGIGAYKVQV 535 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~~v~---------------------------------~~e~gGiTqdIga~~V~i 535 (1018)
+...+++.+|++|.|||||+.+|+.+.-. .+.+.|||+|+.+..+..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 34568999999999999999998643211 122458999987665543
Q ss_pred ecCCceecEEEEeCCCccchHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCC-EEEEEecCCCCCCChHHH
Q 001745 536 PVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGANPERV 614 (1018)
Q Consensus 536 ~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIP-IIVVINKiDL~~a~~erv 614 (1018)
..++|.+.|||||+.|+.+|..|++.||++|++||+..|+..||+.|--.+...+++ +++++|||||.+++.+.+
T Consensus 84 ----~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F 159 (431)
T COG2895 84 ----EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVF 159 (431)
T ss_pred ----ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCHHHH
Confidence 557899999999999999999999999999999999999999999999999999998 999999999999887665
Q ss_pred HHHHHhcCCCCCCC-CCCCcEEEEecCCCCChHH------------HHHHHHHHHHHhhhhcCCCCCCcceEEEEeeecC
Q 001745 615 MQELSSIGLMPEDW-GGDIPMVQISALKGEKVDD------------LLETIMLVAELQELKANPHRNAKGTVIEAGLHKS 681 (1018)
Q Consensus 615 ~~eL~e~gl~~e~~-g~~vpiVeISAktGeGIde------------LleaIl~lael~~lk~~p~r~~~g~ViEs~~dkg 681 (1018)
.+...++.-..... .....+||+||+.|+||-. |++.|..+.--......+.+.+..+|.... ...
T Consensus 160 ~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~~s~~mpWY~GptLLe~LE~v~i~~~~~~~~~RfPVQ~V~Rp~-~df 238 (431)
T COG2895 160 EAIVADYLAFAAQLGLKDVRFIPISALLGDNVVSKSENMPWYKGPTLLEILETVEIADDRSAKAFRFPVQYVNRPN-LDF 238 (431)
T ss_pred HHHHHHHHHHHHHcCCCcceEEechhccCCcccccccCCCcccCccHHHHHhhccccccccccceeeceEEecCCC-Ccc
Confidence 44333221111111 1235799999999999854 555543221111222334445555555433 234
Q ss_pred CCcEEEEEeEeeEEecCCEEEEcc--ceeEEEEEeccCCCcccccCCCccEEEeccCCCCC-CCCeEE
Q 001745 682 KGPVATFILQNGTLKKGDVVVCGE--AFGKVRALFDDSGNRVDEAGPSIPVQIIGLNGVPI-AGDEFE 746 (1018)
Q Consensus 682 ~G~VatglV~~GtLkvGD~Vv~G~--~~gKVRaI~~~~g~~V~eA~pg~~V~V~Gl~~vP~-aGd~~~ 746 (1018)
+|. .|++.+|++++||.|++-+ ...+|+.|...+| .+++|.+|+.|.+.=-+.+.+ -||.+.
T Consensus 239 RGy--aGtiasG~v~~Gd~vvvlPsG~~s~V~~Ivt~dg-~~~~A~aG~aVtl~L~deidisRGd~i~ 303 (431)
T COG2895 239 RGY--AGTIASGSVKVGDEVVVLPSGKTSRVKRIVTFDG-ELAQASAGEAVTLVLADEIDISRGDLIV 303 (431)
T ss_pred ccc--ceeeeccceecCCeEEEccCCCeeeEEEEeccCC-chhhccCCceEEEEEcceeecccCcEEE
Confidence 565 5678899999999998854 4789999998854 689999999998764444443 455443
No 50
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.91 E-value=1.7e-24 Score=221.59 Aligned_cols=164 Identities=35% Similarity=0.540 Sum_probs=129.0
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCccc------------------ccccCCceeeeeeEEEEEecCCceecEEEEeCCC
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA------------------AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG 551 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v~------------------~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPG 551 (1018)
+.++|+++||+|||||||+++|+..... .....++|.++....+. .....+.++|+||||
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~--~~~~~~~i~~iDtPG 79 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFE--KNENNRKITLIDTPG 79 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEE--BTESSEEEEEEEESS
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhccccccccccccc--ccccccceeeccccc
Confidence 4468999999999999999999843211 12346788887776665 134567899999999
Q ss_pred ccchHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHhcCCCCCCCC--
Q 001745 552 HEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWG-- 629 (1018)
Q Consensus 552 HE~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~e~~g-- 629 (1018)
|..|...+.+++..+|++|+|||+.+|+.+|+.+++..+...++|+|||+||+|+......+...++...-+....+.
T Consensus 80 ~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~~ 159 (188)
T PF00009_consen 80 HEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENGE 159 (188)
T ss_dssp SHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTTT
T ss_pred ccceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchhhhHHHHHHHHHHHhccccccCcc
Confidence 999999999999999999999999999999999999999999999999999999974444444444432111111122
Q ss_pred CCCcEEEEecCCCCChHHHHHHHHHH
Q 001745 630 GDIPMVQISALKGEKVDDLLETIMLV 655 (1018)
Q Consensus 630 ~~vpiVeISAktGeGIdeLleaIl~l 655 (1018)
..+|++++||++|.|+++|+++|...
T Consensus 160 ~~~~vi~~Sa~~g~gi~~Ll~~l~~~ 185 (188)
T PF00009_consen 160 EIVPVIPISALTGDGIDELLEALVEL 185 (188)
T ss_dssp STEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred ccceEEEEecCCCCCHHHHHHHHHHh
Confidence 25899999999999999999999754
No 51
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=5.3e-24 Score=232.35 Aligned_cols=233 Identities=31% Similarity=0.375 Sum_probs=175.2
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcC----------------cccccccCCceeeeeeEEEEEecCCceecEEEEeCCCcc
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKT----------------KVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHE 553 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~----------------~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE 553 (1018)
...+|..+||+|||||||..+|++- +.....+.|||+. +.++.+ ....+.+--+|||||.
T Consensus 53 PHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn--~aHveY--eTa~RhYaH~DCPGHA 128 (449)
T KOG0460|consen 53 PHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITIN--AAHVEY--ETAKRHYAHTDCPGHA 128 (449)
T ss_pred CcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEe--eeeeee--eccccccccCCCCchH
Confidence 3457999999999999999998631 1112345688854 555554 4556789999999999
Q ss_pred chHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCC-EEEEEecCCCCC-CCh-----HHHHHHHHhcCCCCC
Q 001745 554 AFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDG-ANP-----ERVMQELSSIGLMPE 626 (1018)
Q Consensus 554 ~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIP-IIVVINKiDL~~-a~~-----erv~~eL~e~gl~~e 626 (1018)
+|.+++..++.+.|++||||+++||.||||+||+.+++.-+++ ++|++||.|+.+ ... -++.+.|.++++.
T Consensus 129 DYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~-- 206 (449)
T KOG0460|consen 129 DYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFD-- 206 (449)
T ss_pred HHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCC--
Confidence 9999999999999999999999999999999999999999999 999999999973 221 2234556666663
Q ss_pred CCCCCCcEEEEecCC---CC----C---hHHHHHHHHHHHHHhhhhcCCCCCCcceEEEEeeecCCCcEEEEEeEeeEEe
Q 001745 627 DWGGDIPMVQISALK---GE----K---VDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLK 696 (1018)
Q Consensus 627 ~~g~~vpiVeISAkt---Ge----G---IdeLleaIl~lael~~lk~~p~r~~~g~ViEs~~dkg~G~VatglV~~GtLk 696 (1018)
|.++|+|.-||+. |. | |.+|++++... +..+..+.+.++...|-.++...|+|+|++|++.+|+|+
T Consensus 207 --Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsy--ip~P~R~~~~pFl~pie~vfsI~GRGTVvtGrlERG~lK 282 (449)
T KOG0460|consen 207 --GDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSY--IPTPERDLDKPFLLPIEDVFSIPGRGTVVTGRLERGVLK 282 (449)
T ss_pred --CCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhcc--CCCcccccCCCceeehhheeeecCCceEEEEEEeecccc
Confidence 4579999988764 32 2 34444444311 122223344567777788888899999999999999999
Q ss_pred cCCEEEE-ccc---eeEEEEEeccCCCcccccCCCccEEEe
Q 001745 697 KGDVVVC-GEA---FGKVRALFDDSGNRVDEAGPSIPVQII 733 (1018)
Q Consensus 697 vGD~Vv~-G~~---~gKVRaI~~~~g~~V~eA~pg~~V~V~ 733 (1018)
+||.+.+ |.. ...|..|... ++.+++|.||+.+-++
T Consensus 283 kG~e~eivG~~~~lkttvtgiemF-~K~ld~a~AGDn~G~L 322 (449)
T KOG0460|consen 283 KGDEVEIVGHNKTLKTTVTGIEMF-RKSLDEAQAGDNLGAL 322 (449)
T ss_pred cCCEEEEeccCcceeeEeehHHHH-HHHHHhcccccceehh
Confidence 9999865 432 4456666666 6789999999998643
No 52
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.91 E-value=4.4e-23 Score=203.06 Aligned_cols=164 Identities=66% Similarity=0.994 Sum_probs=136.4
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVIL 571 (1018)
|+|+|+|++|+|||||+++|....+...+.+++|+++..+.+.... +.+..++|||||||+.|..++..++..+|++++
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~ 79 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEV-LKIPGITFIDTPGHEAFTNMRARGASLTDIAIL 79 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEeccc-CCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEE
Confidence 5799999999999999999998887776777889888777665421 235679999999999999999999999999999
Q ss_pred EEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHhcCCCC-CCCCCCCcEEEEecCCCCChHHHHH
Q 001745 572 VVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMP-EDWGGDIPMVQISALKGEKVDDLLE 650 (1018)
Q Consensus 572 VVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~-e~~g~~vpiVeISAktGeGIdeLle 650 (1018)
|+|++++...++.+.+..+...++|+++++||+|+.....+++...+..+.... +.++..++++++||++|.|+++|++
T Consensus 80 v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 159 (168)
T cd01887 80 VVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLE 159 (168)
T ss_pred EEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHHH
Confidence 999999888899998888888999999999999997665556655555443322 2345568999999999999999999
Q ss_pred HHHHHH
Q 001745 651 TIMLVA 656 (1018)
Q Consensus 651 aIl~la 656 (1018)
+|....
T Consensus 160 ~l~~~~ 165 (168)
T cd01887 160 AILLLA 165 (168)
T ss_pred HHHHhh
Confidence 997654
No 53
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.90 E-value=1.1e-22 Score=247.59 Aligned_cols=310 Identities=24% Similarity=0.312 Sum_probs=214.7
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcC---------------cc-cccccCCceeeeeeEEEEEecCCceecEEEEeCCCc
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKT---------------KV-AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH 552 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~---------------~v-~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGH 552 (1018)
.+.++|+|+||+|||||||+++|... .+ ......++|++.......+.+++.++.++|||||||
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 35679999999999999999999742 11 112236778776655544445677889999999999
Q ss_pred cchHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChH----HHHHHHHhc-----CC
Q 001745 553 EAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPE----RVMQELSSI-----GL 623 (1018)
Q Consensus 553 E~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~e----rv~~eL~e~-----gl 623 (1018)
..|...+.+++..+|++|+|+|+.+|+..++.++++++...++|+|+++||+|+...+.. .+...+... .+
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~ 176 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLINELKLTPQELQERFIKIITEVNKL 176 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcccchhcCCHHHHHHHHhhhhHHHHhh
Confidence 999999999999999999999999999999999999988889999999999999654322 222111110 00
Q ss_pred C----CCC----CC---CCCcEEEEecCCC------------CChHH----------------------HHHHHHHHHHH
Q 001745 624 M----PED----WG---GDIPMVQISALKG------------EKVDD----------------------LLETIMLVAEL 658 (1018)
Q Consensus 624 ~----~e~----~g---~~vpiVeISAktG------------eGIde----------------------LleaIl~lael 658 (1018)
. .+. |. .+......|++.+ ...++ |++.|.....-
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~f~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Pv~~~Lld~i~~~lPs 256 (720)
T TIGR00490 177 IKAMAPEEFRDKWKVRVEDGSVAFGSAYYNWAISVPSMKKTGIGFKDIYKYCKEDKQKELAKKSPLHQVVLDMVIRHLPS 256 (720)
T ss_pred hhccCCHHHhhceEechhhCCHHHHhhhhcccccchhHhhcCCCHHHHHHHHHhccHHHHhhhhhHHHHHHHHHHHhCCC
Confidence 0 000 00 0011222333333 22222 33333322110
Q ss_pred hh-----------------------hhcCCCCCCcceEEEEeeecCCCcEEEEEeEeeEEecCCEEEEc--cceeEEEEE
Q 001745 659 QE-----------------------LKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCG--EAFGKVRAL 713 (1018)
Q Consensus 659 ~~-----------------------lk~~p~r~~~g~ViEs~~dkg~G~VatglV~~GtLkvGD~Vv~G--~~~gKVRaI 713 (1018)
.. ...+++.++.+.|+++..+++.|.+++++|.+|+|++||.|++. ....+|+.|
T Consensus 257 P~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~G~ia~~RV~sGtL~~G~~l~~~~~~~~~kv~~l 336 (720)
T TIGR00490 257 PIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAGEVAVGRLYSGTIRPGMEVYIVDRKAKARIQQV 336 (720)
T ss_pred hhhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEecCCCcEEEEEEEEeCEEcCCCEEEEcCCCCeeEeeEE
Confidence 00 01133456778899999899999999999999999999999763 345678887
Q ss_pred eccC---CCcccccCCCccEEEeccCCCCCCCCeEEEecChHHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhHHHhhc
Q 001745 714 FDDS---GNRVDEAGPSIPVQIIGLNGVPIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGKVTLSSLASAVSA 790 (1018)
Q Consensus 714 ~~~~---g~~V~eA~pg~~V~V~Gl~~vP~aGd~~~vv~~e~~Ar~~a~~r~~~~~~~~i~~~~~~~~~~l~~~~~~~~~ 790 (1018)
+... ..++++|.||+.|.|.|++++ ..||.+..... .. ..+..+
T Consensus 337 ~~~~g~~~~~v~~a~aGdIv~i~gl~~~-~~GdtL~~~~~--~~------------------------~~~~~~------ 383 (720)
T TIGR00490 337 GVYMGPERVEVDEIPAGNIVAVIGLKDA-VAGETICTTVE--NI------------------------TPFESI------ 383 (720)
T ss_pred EEeccCCccCccEECCCCEEEEECcccc-ccCceeecCCc--cc------------------------ccCccc------
Confidence 6553 457999999999999999987 57988742110 00 000000
Q ss_pred CccCCCCcceeeEEEEcCCCccHHHHHHHHHhCCCCCeEEEEEE
Q 001745 791 GKLSGLDLHQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLL 834 (1018)
Q Consensus 791 ~~~~~~~~~~l~vIiKaDv~GSlEAi~~~L~~l~~~~v~i~ii~ 834 (1018)
..+..+.+.+-|.+...+..+.|.++|.+|..++..+.+-+
T Consensus 384 ---~~~~~Pv~~~~i~p~~~~d~~kL~~aL~~L~~eDPsl~v~~ 424 (720)
T TIGR00490 384 ---KHISEPVVTVAIEAKNTKDLPKLIEVLRQVAKEDPTVHVEI 424 (720)
T ss_pred ---ccCCCceEEEEEEECCHHHHHHHHHHHHHHHhhCCeEEEEE
Confidence 01124688999999999999999999999999898888755
No 54
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=2.7e-22 Score=218.07 Aligned_cols=237 Identities=27% Similarity=0.368 Sum_probs=187.5
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcC---cccccccCCceeeeeeEEEEEec----------------C------CceecEE
Q 001745 491 PPVLTIMGHVDHGKTTLLDHIRKT---KVAAAEAGGITQGIGAYKVQVPV----------------D------GKLQPCV 545 (1018)
Q Consensus 491 ~pkVaImGhvdvGKTTLLnrL~~~---~v~~~e~gGiTqdIga~~V~i~~----------------d------gk~~~It 545 (1018)
..+|.++||++||||||..+|.+- ++...-..|+|+.+++....+.- . .--+++.
T Consensus 10 ~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~VS 89 (415)
T COG5257 10 EVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRVS 89 (415)
T ss_pred ceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEEE
Confidence 468999999999999999999864 33344567889888765443310 0 1125689
Q ss_pred EEeCCCccchHHHHHhhhccCCEEEEEEecCCC-CChhHHHHHHHHHHcCCC-EEEEEecCCCCCCChHHHHHHHHh-cC
Q 001745 546 FLDTPGHEAFGAMRARGARVTDIAVIVVAADDG-IRPQTNEAIAHAKAAGVP-IVIAINKIDKDGANPERVMQELSS-IG 622 (1018)
Q Consensus 546 fIDTPGHE~F~~~r~rg~~~ADiVILVVDAddG-v~~QT~E~I~~ak~~gIP-IIVVINKiDL~~a~~erv~~eL~e-~g 622 (1018)
|+|.||||-+...|..++...|+++||+++++. .+|||.||+..+.-.++. +||+-||+|+.. .++..+...+ ..
T Consensus 90 fVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~--~E~AlE~y~qIk~ 167 (415)
T COG5257 90 FVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVS--RERALENYEQIKE 167 (415)
T ss_pred EeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceec--HHHHHHHHHHHHH
Confidence 999999999999999999999999999999984 699999999999988887 999999999953 4444444333 23
Q ss_pred CCCCCCCCCCcEEEEecCCCCChHHHHHHHHHHHHHhhhhcCCCCCCcceEEEEeee--------cCCCcEEEEEeEeeE
Q 001745 623 LMPEDWGGDIPMVQISALKGEKVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLH--------KSKGPVATFILQNGT 694 (1018)
Q Consensus 623 l~~e~~g~~vpiVeISAktGeGIdeLleaIl~lael~~lk~~p~r~~~g~ViEs~~d--------kg~G~VatglV~~Gt 694 (1018)
|....|..+.|++|+||..+.||+.|+++|... +..+..+++.++..+|..++.. +-+|-|+.|.+.+|.
T Consensus 168 FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~--IptP~rd~~~~p~m~v~RSFDVNkPGt~~~~L~GGViGGsl~~G~ 245 (415)
T COG5257 168 FVKGTVAENAPIIPISAQHKANIDALIEAIEKY--IPTPERDLDKPPRMYVARSFDVNKPGTPPEELKGGVIGGSLVQGV 245 (415)
T ss_pred HhcccccCCCceeeehhhhccCHHHHHHHHHHh--CCCCccCCCCCceEEEEeecccCCCCCCHHHccCceecceeeeee
Confidence 444556677999999999999999999999743 4455667788888999888743 345789999999999
Q ss_pred EecCCEEEEc--------------cceeEEEEEeccCCCcccccCCCccEEE
Q 001745 695 LKKGDVVVCG--------------EAFGKVRALFDDSGNRVDEAGPSIPVQI 732 (1018)
Q Consensus 695 LkvGD~Vv~G--------------~~~gKVRaI~~~~g~~V~eA~pg~~V~V 732 (1018)
|++||.|.+- +.+.+|.+|+-. +..+++|.||--|.|
T Consensus 246 l~vGDEIEIrPGi~v~k~~k~~~~pi~T~i~Sl~ag-~~~~~ea~PGGLvgv 296 (415)
T COG5257 246 LRVGDEIEIRPGIVVEKGGKTVWEPITTEIVSLQAG-GEDVEEARPGGLVGV 296 (415)
T ss_pred EecCCeEEecCCeEeecCCceEEEEeeEEEEEEEeC-CeeeeeccCCceEEE
Confidence 9999998772 236789999776 788999999977654
No 55
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=2.4e-22 Score=219.32 Aligned_cols=237 Identities=27% Similarity=0.337 Sum_probs=188.9
Q ss_pred CEEEEEeCCCCCHHHHHHHHHc-------CcccccccCCceeeeeeEEEEEec-----CCceecEEEEeCCCccchHHHH
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRK-------TKVAAAEAGGITQGIGAYKVQVPV-----DGKLQPCVFLDTPGHEAFGAMR 559 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~-------~~v~~~e~gGiTqdIga~~V~i~~-----dgk~~~ItfIDTPGHE~F~~~r 559 (1018)
.+++|+||+|+|||||..+|.. +....+...|+|.|+++..+.... .+....++|+|+|||.......
T Consensus 8 ~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIRti 87 (522)
T KOG0461|consen 8 LNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIRTI 87 (522)
T ss_pred eeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHHHH
Confidence 6799999999999999999963 222345568999999988776532 3456778999999999999988
Q ss_pred HhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCCh-----HHHHHHHHhcCCCCCCCCCCCcE
Q 001745 560 ARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANP-----ERVMQELSSIGLMPEDWGGDIPM 634 (1018)
Q Consensus 560 ~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~-----erv~~eL~e~gl~~e~~g~~vpi 634 (1018)
..++...|..++|+|+..|.++|+.|++-.....-...||++||+|....+. ++....+. ..+....++++.|+
T Consensus 88 iggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~kk~~-KtLe~t~f~g~~PI 166 (522)
T KOG0461|consen 88 IGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAKKVR-KTLESTGFDGNSPI 166 (522)
T ss_pred HhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchhhhhHHHHHHHHHH-HHHHhcCcCCCCce
Confidence 9999999999999999999999999999888877778999999999743221 11111111 23333456778999
Q ss_pred EEEecCCC----CChHHHHHHHHHHHHHhhhhcCCCCCCcceEEEEeeecCCCcEEEEEeEeeEEecCCEEEEc--ccee
Q 001745 635 VQISALKG----EKVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCG--EAFG 708 (1018)
Q Consensus 635 VeISAktG----eGIdeLleaIl~lael~~lk~~p~r~~~g~ViEs~~dkg~G~VatglV~~GtLkvGD~Vv~G--~~~g 708 (1018)
+++||+.| ++|.+|.+.|.. .+-.++.++..++...|...+-.+|.|+|.||.|.+|.|+.|+.|.+- ...-
T Consensus 167 ~~vsa~~G~~~~~~i~eL~e~l~s--~if~P~Rd~~gpflm~vDHCF~IKGQGTV~TGTvl~G~~~ln~~iE~PAL~e~r 244 (522)
T KOG0461|consen 167 VEVSAADGYFKEEMIQELKEALES--RIFEPKRDEEGPFLMAVDHCFAIKGQGTVLTGTVLRGVLRLNTEIEFPALNEKR 244 (522)
T ss_pred eEEecCCCccchhHHHHHHHHHHH--hhcCCCcCCCCCeEEEeeeeEEeccCceEEeeeEEEeEEecCcEEeecccchhh
Confidence 99999999 888888887753 234455566677777777788889999999999999999999999883 3456
Q ss_pred EEEEEeccCCCcccccCCCccEEE
Q 001745 709 KVRALFDDSGNRVDEAGPSIPVQI 732 (1018)
Q Consensus 709 KVRaI~~~~g~~V~eA~pg~~V~V 732 (1018)
||++|++. .++|..|..|++..+
T Consensus 245 kVKslqmf-~~~vtsa~~GdR~g~ 267 (522)
T KOG0461|consen 245 KVKSLQMF-KQRVTSAAAGDRAGF 267 (522)
T ss_pred hhhhHHHH-hhhhhhhhcccceee
Confidence 89999988 678999999998864
No 56
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=7.2e-22 Score=227.90 Aligned_cols=234 Identities=23% Similarity=0.312 Sum_probs=183.2
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcc-------------------------------cccccCCceeeeeeEEEEEecC
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKV-------------------------------AAAEAGGITQGIGAYKVQVPVD 538 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v-------------------------------~~~e~gGiTqdIga~~V~i~~d 538 (1018)
....++++||+|+|||||+.+|+..-. ..+.+.|+|.++....++
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe---- 251 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE---- 251 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe----
Confidence 345789999999999999999853211 112356888887666654
Q ss_pred CceecEEEEeCCCccchHHHHHhhhccCCEEEEEEecCCC-------CChhHHHHHHHHHHcCCC-EEEEEecCCCCCCC
Q 001745 539 GKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDG-------IRPQTNEAIAHAKAAGVP-IVIAINKIDKDGAN 610 (1018)
Q Consensus 539 gk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVILVVDAddG-------v~~QT~E~I~~ak~~gIP-IIVVINKiDL~~a~ 610 (1018)
...+.++|+|+|||..|...+..++..+|++|||+|++-+ ...||+||...++.+|+. +||++||+|+.+|+
T Consensus 252 s~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Ws 331 (603)
T KOG0458|consen 252 SKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSWS 331 (603)
T ss_pred cCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCcc
Confidence 4567899999999999999999999999999999999863 468999999999999987 99999999999999
Q ss_pred hHHHHHHHHh--------cCCCCCCCCCCCcEEEEecCCCCChHH------HHHHHH---HHHHHhhh---hcCCCCCCc
Q 001745 611 PERVMQELSS--------IGLMPEDWGGDIPMVQISALKGEKVDD------LLETIM---LVAELQEL---KANPHRNAK 670 (1018)
Q Consensus 611 ~erv~~eL~e--------~gl~~e~~g~~vpiVeISAktGeGIde------LleaIl---~lael~~l---k~~p~r~~~ 670 (1018)
.+++...-.. .|+.. .++.|+|||+.+|+|+.. |.+|-. ++..+... ....+.|+.
T Consensus 332 q~RF~eIk~~l~~fL~~~~gf~e----s~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~~~~p~~~~~kPl~ 407 (603)
T KOG0458|consen 332 QDRFEEIKNKLSSFLKESCGFKE----SSVKFIPISGLSGENLIKIEQENELSQWYKGPTLLSQIDSFKIPERPIDKPLR 407 (603)
T ss_pred HHHHHHHHHHHHHHHHHhcCccc----CCcceEecccccCCcccccccchhhhhhhcCChHHHHHhhccCCCCcccCCeE
Confidence 8887544332 34332 357899999999999854 333311 11111111 122456888
Q ss_pred ceEEEEeeecCCCcEEEEEeEeeEEecCCEEEEccc--eeEEEEEeccCCCcccccCCCccEEE
Q 001745 671 GTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEA--FGKVRALFDDSGNRVDEAGPSIPVQI 732 (1018)
Q Consensus 671 g~ViEs~~dkg~G~VatglV~~GtLkvGD~Vv~G~~--~gKVRaI~~~~g~~V~eA~pg~~V~V 732 (1018)
+.|.+++...+.|..++|.|..|.|..||.|++++. .+.|+.|..+ .++...|.+|+.|.+
T Consensus 408 ltIsdi~~~~~~~~~i~gkiesG~iq~gqkl~i~~s~e~~~vk~l~~~-~~~~~~a~AGD~Vsl 470 (603)
T KOG0458|consen 408 LTISDIYPLPSSGVSISGKIESGYIQPGQKLYIMTSREDATVKGLTSN-DEPKTWAVAGDNVSL 470 (603)
T ss_pred EEhhheeecCCCeeEEEEEEeccccccCCEEEEecCcceEEEEeeecC-CCcceeEeeCCEEEE
Confidence 999999988999999999999999999999999765 6899999887 678889999999864
No 57
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.87 E-value=1.7e-21 Score=215.36 Aligned_cols=241 Identities=26% Similarity=0.344 Sum_probs=181.1
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccc--------------cCCceeeeeeEEEEEec------------------
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAE--------------AGGITQGIGAYKVQVPV------------------ 537 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e--------------~gGiTqdIga~~V~i~~------------------ 537 (1018)
....|+++||+|||||||+..|...+...+. ..|.|-++.+..+-+.-
T Consensus 116 ~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~v 195 (527)
T COG5258 116 EHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAAV 195 (527)
T ss_pred ceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhHh
Confidence 4457999999999999999988654433211 23445555443333210
Q ss_pred -CCceecEEEEeCCCccchHHHHHhhh--ccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCC-CChHH
Q 001745 538 -DGKLQPCVFLDTPGHEAFGAMRARGA--RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDG-ANPER 613 (1018)
Q Consensus 538 -dgk~~~ItfIDTPGHE~F~~~r~rg~--~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~-a~~er 613 (1018)
+..+.-+.|+||-|||.|.....+++ +..|..+|++.|++|++..|+||+-.+...++|+|++++|+|+.. .....
T Consensus 196 v~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~~~ddr~~~ 275 (527)
T COG5258 196 VKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDMVPDDRFQG 275 (527)
T ss_pred hhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEecccCcHHHHHH
Confidence 11234589999999999999999998 889999999999999999999999999999999999999999953 23333
Q ss_pred HHHHHHh----cCCC---C-------------CCCCCCCcEEEEecCCCCChHHHHHHHHHHHHHhhhhcCCCCCCcceE
Q 001745 614 VMQELSS----IGLM---P-------------EDWGGDIPMVQISALKGEKVDDLLETIMLVAELQELKANPHRNAKGTV 673 (1018)
Q Consensus 614 v~~eL~e----~gl~---~-------------e~~g~~vpiVeISAktGeGIdeLleaIl~lael~~lk~~p~r~~~g~V 673 (1018)
+.++... .+-. . ....+-+|+|.+|+.||+|++-|.+.+..+..-. ......++..+|
T Consensus 276 v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~Lp~rr--~~~d~g~flmYI 353 (527)
T COG5258 276 VVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLLLPKRR--RWDDEGPFLMYI 353 (527)
T ss_pred HHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHhCCccc--ccCCCCCeEEEE
Confidence 3333221 1111 0 1111257999999999999987777665432111 224456788899
Q ss_pred EEEeeecCCCcEEEEEeEeeEEecCCEEEEccc------eeEEEEEeccCCCcccccCCCccEEEe
Q 001745 674 IEAGLHKSKGPVATFILQNGTLKKGDVVVCGEA------FGKVRALFDDSGNRVDEAGPSIPVQII 733 (1018)
Q Consensus 674 iEs~~dkg~G~VatglV~~GtLkvGD~Vv~G~~------~gKVRaI~~~~g~~V~eA~pg~~V~V~ 733 (1018)
.+++...|.|+|+.|.|++|.|+.||.+++||. ..+|++|+.+ +.++++|.||..+.+.
T Consensus 354 d~iYsVtGVGtVvsGsV~~G~l~~gd~vllGP~~~G~fr~v~vkSIemh-~~rvdsa~aG~iig~A 418 (527)
T COG5258 354 DKIYSVTGVGTVVSGSVKSGILHVGDTVLLGPFKDGKFREVVVKSIEMH-HYRVDSAKAGSIIGIA 418 (527)
T ss_pred EeeEEEeeeEEEEeeeEEeeeeccCCEEEEccCCCCcEEEEEEEEEEEe-eEEeccccCCcEEEEE
Confidence 999999999999999999999999999999985 4589999887 6789999999988643
No 58
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.87 E-value=3.2e-21 Score=188.35 Aligned_cols=157 Identities=31% Similarity=0.472 Sum_probs=117.7
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCc---ccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTK---VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~---v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADi 568 (1018)
.+|+++|++|+|||||+++|.+.. +.....+++|.+++++.+.+ .. +..++|||||||+.|...+..++..+|+
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~--~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ 77 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDL--PS-GKRLGFIDVPGHEKFIKNMLAGAGGIDL 77 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEe--cC-CcEEEEEECCChHHHHHHHHhhhhcCCE
Confidence 379999999999999999998632 22233457888877766554 21 4579999999999998888888999999
Q ss_pred EEEEEecCCCCChhHHHHHHHHHHcCC-CEEEEEecCCCCCCC-hHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCChH
Q 001745 569 AVIVVAADDGIRPQTNEAIAHAKAAGV-PIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVD 646 (1018)
Q Consensus 569 VILVVDAddGv~~QT~E~I~~ak~~gI-PIIVVINKiDL~~a~-~erv~~eL~e~gl~~e~~g~~vpiVeISAktGeGId 646 (1018)
+++|+|++++..+++.+.+..+...+. |+|+++||+|+.... ......++.+.- . ..+....+++++||++|.|++
T Consensus 78 ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~Sa~~~~~v~ 155 (164)
T cd04171 78 VLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELL-A-GTFLADAPIFPVSAVTGEGIE 155 (164)
T ss_pred EEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHHH-H-hcCcCCCcEEEEeCCCCcCHH
Confidence 999999999888888888777766676 899999999996432 112222222210 0 000124689999999999999
Q ss_pred HHHHHHH
Q 001745 647 DLLETIM 653 (1018)
Q Consensus 647 eLleaIl 653 (1018)
++++.|.
T Consensus 156 ~l~~~l~ 162 (164)
T cd04171 156 ELKEYLD 162 (164)
T ss_pred HHHHHHh
Confidence 9999875
No 59
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.87 E-value=2.3e-20 Score=230.72 Aligned_cols=314 Identities=20% Similarity=0.270 Sum_probs=203.8
Q ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHcCcc----------------cccccCCceeeeeeEEEEEe------------cCC
Q 001745 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKV----------------AAAEAGGITQGIGAYKVQVP------------VDG 539 (1018)
Q Consensus 488 ~~r~pkVaImGhvdvGKTTLLnrL~~~~v----------------~~~e~gGiTqdIga~~V~i~------------~dg 539 (1018)
..+.++|+|+||+|||||||+++|+.... ......|+|.......+.+. ..+
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 44677999999999999999999974321 11223466655444343332 122
Q ss_pred ceecEEEEeCCCccchHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCC-----------
Q 001745 540 KLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDG----------- 608 (1018)
Q Consensus 540 k~~~ItfIDTPGHE~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~----------- 608 (1018)
.++.++|+|||||.+|...+.++++.+|++|+|+|+.+|+..||..+++++...++|+|+++||||+..
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~~~~~~~~~~~~~ 175 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAY 175 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCcccchhhcCCHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999999999972
Q ss_pred CChHHHHHHHHh----c--C-C-C--CCCCCCCCcEEEEecCCC------------------------------------
Q 001745 609 ANPERVMQELSS----I--G-L-M--PEDWGGDIPMVQISALKG------------------------------------ 642 (1018)
Q Consensus 609 a~~erv~~eL~e----~--g-l-~--~e~~g~~vpiVeISAktG------------------------------------ 642 (1018)
.+..+++.++.. + . + . ....++ .+++.|+..|
T Consensus 176 ~~~~~vi~~in~~~~~~~~~~~~~~~~~P~~~--nv~F~s~~~~~~~~l~~~~~~y~~~~~~~~~~l~~~lwg~~~~~~~ 253 (843)
T PLN00116 176 QTFSRVIENANVIMATYEDPLLGDVQVYPEKG--TVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPA 253 (843)
T ss_pred HHHHHHHHHHHHHHHhccccccCceEEccCCC--eeeeeecccCEEEEhHHHHHHHHHHhCCcHHHHHHHhhccceEcCC
Confidence 344555655541 0 0 0 0 000000 1112222111
Q ss_pred -----------C------------ChHHHHHHHHH--------HHH----------------------------------
Q 001745 643 -----------E------------KVDDLLETIML--------VAE---------------------------------- 657 (1018)
Q Consensus 643 -----------e------------GIdeLleaIl~--------lae---------------------------------- 657 (1018)
. -+.+|++.+.. ..+
T Consensus 254 ~~~~~~~~~~~~~~~~~f~~~il~~~~~l~e~v~~~d~~lle~~l~~~~~~l~~~el~~~~~~l~~~~~~pv~~~s~~Ll 333 (843)
T PLN00116 254 TKKWTTKNTGSPTCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLEKLGVTLKSDEKELMGKALMKRVMQTWLPASDALL 333 (843)
T ss_pred CceEEecCCCCchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCCCCCHHHHhhhhHHHHHHHHHhhcCChHHHH
Confidence 0 00111111110 000
Q ss_pred ------Hhhh-------------------------hcCCCCCCcceEEEEeeecCCCc-EEEEEeEeeEEecCCEEEE-c
Q 001745 658 ------LQEL-------------------------KANPHRNAKGTVIEAGLHKSKGP-VATFILQNGTLKKGDVVVC-G 704 (1018)
Q Consensus 658 ------l~~l-------------------------k~~p~r~~~g~ViEs~~dkg~G~-VatglV~~GtLkvGD~Vv~-G 704 (1018)
++.+ ..+++.+..+.|+....+...|. ++.++|.+|+|+.||.|++ |
T Consensus 334 d~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RVysGtL~~g~~v~v~~ 413 (843)
T PLN00116 334 EMIIFHLPSPAKAQRYRVENLYEGPLDDKYATAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGTVATGMKVRIMG 413 (843)
T ss_pred HHHHHhCCChHHhhhHHhhhccCCCCCccccchhhcCCCCCCeEEEEEeeeecCCCCeEEEEEEEEeeeecCCCEEEEeC
Confidence 0000 00122355677777776666676 9999999999999999963 4
Q ss_pred cce----------eEEEEEe---ccCCCcccccCCCccEEEeccCCCCCCCCeEEEecChHHHHHHHHHHHHHHHHHHHh
Q 001745 705 EAF----------GKVRALF---DDSGNRVDEAGPSIPVQIIGLNGVPIAGDEFEVVDSLDVAREKAEARAFSLRNERIS 771 (1018)
Q Consensus 705 ~~~----------gKVRaI~---~~~g~~V~eA~pg~~V~V~Gl~~vP~aGd~~~vv~~e~~Ar~~a~~r~~~~~~~~i~ 771 (1018)
+.+ .+|..|+ ......++++.+|+.+.|.|+++....|+.+.-.. + .
T Consensus 414 ~n~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~AGdI~ai~gl~~~~~~gdTL~~~~--~-~----------------- 473 (843)
T PLN00116 414 PNYVPGEKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTVAMVGLDQFITKNATLTNEK--E-V----------------- 473 (843)
T ss_pred CCCCCCCccccceeEhheEEEecCCCceECcEECCCCEEEEEeecccccCCceecCCc--c-c-----------------
Confidence 321 2454444 34446799999999999999988645577763110 0 0
Q ss_pred hhcCCCccchhhhHHHhhcCccCCCC-cceeeEEEEcCCCccHHHHHHHHHhCCCCCeEEEEEEcccC
Q 001745 772 AKAGDGKVTLSSLASAVSAGKLSGLD-LHQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATG 838 (1018)
Q Consensus 772 ~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~l~vIiKaDv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG 838 (1018)
....+..+ .+. .+.+.+.|.+...+..+.|.++|.+|..++..+.+.....|
T Consensus 474 -----~~~~l~~~----------~~~~~Pv~~~aIeP~~~~d~~kL~~aL~~L~~eDPsl~v~~~etg 526 (843)
T PLN00116 474 -----DAHPIKAM----------KFSVSPVVRVAVQCKNASDLPKLVEGLKRLAKSDPMVQCTIEESG 526 (843)
T ss_pred -----CCcccccc----------ccCCCceEEEEEEECChhhHHHHHHHHHHHHHhCCCeEEEEcCCC
Confidence 00111100 011 36788999999999999999999999988888886444333
No 60
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.87 E-value=6.6e-21 Score=190.52 Aligned_cols=157 Identities=32% Similarity=0.457 Sum_probs=117.4
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccc---------------cccCCceeeeeeEEEEEec-CCceecEEEEeCCCccch
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAA---------------AEAGGITQGIGAYKVQVPV-DGKLQPCVFLDTPGHEAF 555 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~---------------~e~gGiTqdIga~~V~i~~-dgk~~~ItfIDTPGHE~F 555 (1018)
.+|+++|++|||||||+++|.+..... ....|+|.+.....+.+.. ++..+.++|||||||+.|
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF 80 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence 379999999999999999998642111 1123444433222222211 456778999999999999
Q ss_pred HHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHhc-CCCCCCCCCCCcE
Q 001745 556 GAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-GLMPEDWGGDIPM 634 (1018)
Q Consensus 556 ~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e~-gl~~e~~g~~vpi 634 (1018)
..++.+++..+|++|+|+|++++...++.+.+..+...++|+|+++||+|+......+...++.+. ++. ...+
T Consensus 81 ~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~------~~~~ 154 (179)
T cd01890 81 SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADPERVKQQIEDVLGLD------PSEA 154 (179)
T ss_pred HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCC------cccE
Confidence 999999999999999999999988888888777777788999999999999654444444444332 221 1358
Q ss_pred EEEecCCCCChHHHHHHHHH
Q 001745 635 VQISALKGEKVDDLLETIML 654 (1018)
Q Consensus 635 VeISAktGeGIdeLleaIl~ 654 (1018)
+++||++|.||++|+++|..
T Consensus 155 ~~~Sa~~g~gi~~l~~~l~~ 174 (179)
T cd01890 155 ILVSAKTGLGVEDLLEAIVE 174 (179)
T ss_pred EEeeccCCCCHHHHHHHHHh
Confidence 99999999999999999864
No 61
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.85 E-value=9.8e-21 Score=193.97 Aligned_cols=165 Identities=24% Similarity=0.360 Sum_probs=123.0
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcC-------cccccccCCceeeeeeEEEEEe----------cCCceecEEEEeCCCccc
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKT-------KVAAAEAGGITQGIGAYKVQVP----------VDGKLQPCVFLDTPGHEA 554 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~-------~v~~~e~gGiTqdIga~~V~i~----------~dgk~~~ItfIDTPGHE~ 554 (1018)
.+|+++||+|||||||+++|... .......+|+|+++++..+.+. ..+..+.++|||||||..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 37999999999999999999862 2233456789998887776654 123467899999999988
Q ss_pred hHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCC-hHHHHHHHHhc-CC-CCCCCCCC
Q 001745 555 FGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN-PERVMQELSSI-GL-MPEDWGGD 631 (1018)
Q Consensus 555 F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~-~erv~~eL~e~-gl-~~e~~g~~ 631 (1018)
|......++..+|++++|+|+.++...++.+.+..+...++|+++++||+|+.... .+....++.+. .. ........
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 160 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKN 160 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCC
Confidence 87777778889999999999999988888877777777789999999999996422 22222222210 00 00000124
Q ss_pred CcEEEEecCCCCChHHHHHHHHHHH
Q 001745 632 IPMVQISALKGEKVDDLLETIMLVA 656 (1018)
Q Consensus 632 vpiVeISAktGeGIdeLleaIl~la 656 (1018)
++++++||++|.|+++|+++|..+.
T Consensus 161 ~~vi~iSa~~g~gi~~L~~~l~~~~ 185 (192)
T cd01889 161 SPIIPVSAKPGGGEAELGKDLNNLI 185 (192)
T ss_pred CCEEEEeccCCCCHHHHHHHHHhcc
Confidence 7899999999999999999987543
No 62
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.85 E-value=2.1e-20 Score=194.68 Aligned_cols=146 Identities=36% Similarity=0.455 Sum_probs=113.8
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcc----------------cccccCCceeeeeeEEEEEecCCceecEEEEeCCCccch
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKV----------------AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAF 555 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v----------------~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F 555 (1018)
.+|+++||+|||||||+++|+.... ......|+|++.....+ ...+..++|+|||||..|
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~----~~~~~~i~~iDtPG~~~~ 78 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEY----ETANRHYAHVDCPGHADY 78 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEe----cCCCeEEEEEECcCHHHH
Confidence 5799999999999999999975310 11235678877644332 345678999999999999
Q ss_pred HHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCC-EEEEEecCCCCCCC--hH----HHHHHHHhcCCCCCCC
Q 001745 556 GAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGAN--PE----RVMQELSSIGLMPEDW 628 (1018)
Q Consensus 556 ~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIP-IIVVINKiDL~~a~--~e----rv~~eL~e~gl~~e~~ 628 (1018)
...+.+++..+|++++|+|+.+++.+|+.+++..+...++| +|+++||+|+.... .+ ++...+...++..
T Consensus 79 ~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~--- 155 (195)
T cd01884 79 IKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDG--- 155 (195)
T ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccc---
Confidence 99999999999999999999999999999999999999998 88999999995311 11 2223333344432
Q ss_pred CCCCcEEEEecCCCCCh
Q 001745 629 GGDIPMVQISALKGEKV 645 (1018)
Q Consensus 629 g~~vpiVeISAktGeGI 645 (1018)
.+++++++||++|.|+
T Consensus 156 -~~v~iipiSa~~g~n~ 171 (195)
T cd01884 156 -DNTPIVRGSALKALEG 171 (195)
T ss_pred -cCCeEEEeeCccccCC
Confidence 3589999999999986
No 63
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=4.5e-20 Score=207.29 Aligned_cols=258 Identities=28% Similarity=0.374 Sum_probs=185.3
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCcccccccC----------------Cc--eeeeeeEEEEEecCCceecEEEEeCC
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAG----------------GI--TQGIGAYKVQVPVDGKLQPCVFLDTP 550 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~g----------------Gi--TqdIga~~V~i~~dgk~~~ItfIDTP 550 (1018)
.+....+|+-|||+|||||...|+--..+...++ .+ .++|...+-.+.+++.++.++++|||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP 89 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP 89 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence 3557899999999999999999862211111111 00 13333334344456677899999999
Q ss_pred CccchHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHhc-CCC--CCC
Q 001745 551 GHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-GLM--PED 627 (1018)
Q Consensus 551 GHE~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e~-gl~--~e~ 627 (1018)
||++|..-..|.+..+|.+++|+|+..|+.+||+..++.|+..++||+-++||+|....++-+++.++.+. ++. +-.
T Consensus 90 GHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~~~Pit 169 (528)
T COG4108 90 GHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELGIQCAPIT 169 (528)
T ss_pred CccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccccCChHHHHHHHHHHhCcceeccc
Confidence 99999999999999999999999999999999999999999999999999999999887777766665531 111 000
Q ss_pred -----------------------------------------------------------------------------CCC
Q 001745 628 -----------------------------------------------------------------------------WGG 630 (1018)
Q Consensus 628 -----------------------------------------------------------------------------~g~ 630 (1018)
-|.
T Consensus 170 WPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL~~~a~~~Fd~~~fl~G~ 249 (528)
T COG4108 170 WPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELELVQGAGNEFDLEAFLAGE 249 (528)
T ss_pred ccccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHHHHHHhhccccCHHHHhcCC
Confidence 023
Q ss_pred CCcEEEEecCCCCChHHHHHHHHHHHHHhhhh-------cCCCCCCcceEEEEeee---cCCCcEEEEEeEeeEEecCCE
Q 001745 631 DIPMVQISALKGEKVDDLLETIMLVAELQELK-------ANPHRNAKGTVIEAGLH---KSKGPVATFILQNGTLKKGDV 700 (1018)
Q Consensus 631 ~vpiVeISAktGeGIdeLleaIl~lael~~lk-------~~p~r~~~g~ViEs~~d---kg~G~VatglV~~GtLkvGD~ 700 (1018)
-.|+|.-||+++.||+.+++.+..++..+... ...+..+.|.|+.+... +.+-.++..+|.+|.+..|..
T Consensus 250 ~TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~~~a~~~~v~p~e~kfsGFVFKIQANMDp~HRDRIAFmRv~SGkferGMk 329 (528)
T COG4108 250 LTPVFFGSALGNFGVDHFLDALVDWAPSPRARQADTREVEPTEDKFSGFVFKIQANMDPKHRDRIAFMRVCSGKFERGMK 329 (528)
T ss_pred ccceEehhhhhccCHHHHHHHHHhhCCCCCcccCCcCcccCCCCccceEEEEEEcCCCcccccceeEEEeccccccCCce
Confidence 47999999999999999999998776533221 12234588999887643 567899999999999999998
Q ss_pred EEE---ccc--eeEEEEEeccCCCcccccCCCccEEEeccCCCCCCCCeEEE
Q 001745 701 VVC---GEA--FGKVRALFDDSGNRVDEAGPSIPVQIIGLNGVPIAGDEFEV 747 (1018)
Q Consensus 701 Vv~---G~~--~gKVRaI~~~~g~~V~eA~pg~~V~V~Gl~~vP~aGd~~~v 747 (1018)
+.. |.. ......++...-+.+++|.||+.+.+..- +.-..||.|..
T Consensus 330 v~h~rtGK~~~ls~~~~f~A~dRe~ve~A~aGDIIGl~nh-G~~~IGDT~t~ 380 (528)
T COG4108 330 VTHVRTGKDVKLSDALTFMAQDRETVEEAYAGDIIGLHNH-GTIQIGDTFTE 380 (528)
T ss_pred eeeeecCCceEecchHhhhhhhhhhhhhccCCCeEeccCC-Cceeecceeec
Confidence 765 221 11122222333466999999998743221 12256776654
No 64
>PTZ00416 elongation factor 2; Provisional
Probab=99.84 E-value=3.5e-19 Score=220.08 Aligned_cols=119 Identities=30% Similarity=0.405 Sum_probs=97.1
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCcc----------------cccccCCceeeeeeEEEEEec------CCceecEEE
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKV----------------AAAEAGGITQGIGAYKVQVPV------DGKLQPCVF 546 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~~v----------------~~~e~gGiTqdIga~~V~i~~------dgk~~~Itf 546 (1018)
.+..+|+|+||+|||||||+++|+.... ......|+|.+.....+.+.. ++.++.++|
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 4567999999999999999999975221 112245667665444443321 123577999
Q ss_pred EeCCCccchHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCC
Q 001745 547 LDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKD 607 (1018)
Q Consensus 547 IDTPGHE~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~ 607 (1018)
+|||||..|.....+++..+|++|+|+|+.+|+..|+..+++++...++|+|+++||||+.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhh
Confidence 9999999999999999999999999999999999999999999999999999999999997
No 65
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.84 E-value=1.1e-19 Score=180.64 Aligned_cols=154 Identities=21% Similarity=0.333 Sum_probs=112.9
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVIL 571 (1018)
.+|+++|++++|||||+++|....+...... |.....+.....+++....+.||||||++.|..++..+++.+|++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 78 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLS--TYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACIL 78 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCC--ceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEE
Confidence 3799999999999999999998776544332 33334444444556777889999999999999999999999999999
Q ss_pred EEecCCCCChhHH-HHHHHHHHc--CCCEEEEEecCCCCCCChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCChHHH
Q 001745 572 VVAADDGIRPQTN-EAIAHAKAA--GVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDL 648 (1018)
Q Consensus 572 VVDAddGv~~QT~-E~I~~ak~~--gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGeGIdeL 648 (1018)
|+|+++....+.. +++..++.. ++|+|+++||+|+......+.. .+.. .+ .++++++||++|.|++++
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~~~~~~-~~~~------~~--~~~~~~~Sa~~~~gv~~l 149 (161)
T cd04124 79 VFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSVTQKKF-NFAE------KH--NLPLYYVSAADGTNVVKL 149 (161)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhHHHHHH-HHHH------Hc--CCeEEEEeCCCCCCHHHH
Confidence 9999875443332 333444433 7899999999998432111111 1111 11 368999999999999999
Q ss_pred HHHHHHHH
Q 001745 649 LETIMLVA 656 (1018)
Q Consensus 649 leaIl~la 656 (1018)
|+.+....
T Consensus 150 ~~~l~~~~ 157 (161)
T cd04124 150 FQDAIKLA 157 (161)
T ss_pred HHHHHHHH
Confidence 99997543
No 66
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.83 E-value=3.2e-20 Score=190.47 Aligned_cols=162 Identities=33% Similarity=0.413 Sum_probs=118.2
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHc--Cccccc--------------ccCCceeeeeeEEEEEecCCceecEEEEeCCCccc
Q 001745 491 PPVLTIMGHVDHGKTTLLDHIRK--TKVAAA--------------EAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA 554 (1018)
Q Consensus 491 ~pkVaImGhvdvGKTTLLnrL~~--~~v~~~--------------e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~ 554 (1018)
..+|+++|++|+|||||+++|.. ..+... ...|+|.+..... +.+....++|||||||+.
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~----~~~~~~~~~l~DtpG~~~ 77 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTA----VTYKDTKINIVDTPGHAD 77 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeE----EEECCEEEEEEECCCcHH
Confidence 35899999999999999999986 332211 1134443332222 234567899999999999
Q ss_pred hHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHh----cCCCCCCCCC
Q 001745 555 FGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSS----IGLMPEDWGG 630 (1018)
Q Consensus 555 F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e----~gl~~e~~g~ 630 (1018)
|..++..++..+|++++|+|++++..+++..++..+...++|+++++||+|+..........++.. .+...+. .
T Consensus 78 ~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--~ 155 (194)
T cd01891 78 FGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQ--L 155 (194)
T ss_pred HHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCcccc--C
Confidence 999999999999999999999998888888878777778999999999999976555444433333 2222221 2
Q ss_pred CCcEEEEecCCCCChHHHHHHHHHHHHH
Q 001745 631 DIPMVQISALKGEKVDDLLETIMLVAEL 658 (1018)
Q Consensus 631 ~vpiVeISAktGeGIdeLleaIl~lael 658 (1018)
.++++++||++|.|+.++-++...+.++
T Consensus 156 ~~~iv~~Sa~~g~~~~~~~~~~~~~~~l 183 (194)
T cd01891 156 DFPVLYASAKNGWASLNLEDPSEDLEPL 183 (194)
T ss_pred ccCEEEeehhccccccccccchhhHHHH
Confidence 4789999999999987765544433333
No 67
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.83 E-value=2e-19 Score=176.46 Aligned_cols=152 Identities=22% Similarity=0.262 Sum_probs=108.3
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVIL 571 (1018)
.+|+++|.+|+|||||++++.+..+.... ..++.+. +.....+++....+.+|||||++.|..++..+++.+|++++
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~~~-~~t~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~il 79 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFVTDY-DPTIEDS--YTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLL 79 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCccc-CCCccce--EEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEE
Confidence 58999999999999999999977654332 2333221 22233456666789999999999999999999999999999
Q ss_pred EEecCCCCChhHH-HHHHHH----HHcCCCEEEEEecCCCCCCC---hHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCC
Q 001745 572 VVAADDGIRPQTN-EAIAHA----KAAGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (1018)
Q Consensus 572 VVDAddGv~~QT~-E~I~~a----k~~gIPIIVVINKiDL~~a~---~erv~~eL~e~gl~~e~~g~~vpiVeISAktGe 643 (1018)
|+|+++....+.. .++..+ ...++|+|+++||+|+.... .++........ .++++++||++|.
T Consensus 80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~ 150 (164)
T cd04145 80 VFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKL---------KIPYIETSAKDRL 150 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHc---------CCcEEEeeCCCCC
Confidence 9999974322221 112222 22478999999999996432 22222222221 2579999999999
Q ss_pred ChHHHHHHHHHH
Q 001745 644 KVDDLLETIMLV 655 (1018)
Q Consensus 644 GIdeLleaIl~l 655 (1018)
||+++|++|...
T Consensus 151 ~i~~l~~~l~~~ 162 (164)
T cd04145 151 NVDKAFHDLVRV 162 (164)
T ss_pred CHHHHHHHHHHh
Confidence 999999998743
No 68
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.82 E-value=2.5e-19 Score=175.36 Aligned_cols=152 Identities=20% Similarity=0.215 Sum_probs=110.5
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVIL 571 (1018)
.+|+++|++++|||||+++|.+..+.....+ |.+..+....+.+++....++||||||++.|..++..+++.+|++|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 78 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLP--TIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLL 78 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCC--ccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEE
Confidence 3799999999999999999998877654443 33333333344456777899999999999999999999999999999
Q ss_pred EEecCCCCChhHH-HHHHHH----HH----cCCCEEEEEecCCCCC---CChHHHHHHHHhcCCCCCCCCCCCcEEEEec
Q 001745 572 VVAADDGIRPQTN-EAIAHA----KA----AGVPIVIAINKIDKDG---ANPERVMQELSSIGLMPEDWGGDIPMVQISA 639 (1018)
Q Consensus 572 VVDAddGv~~QT~-E~I~~a----k~----~gIPIIVVINKiDL~~---a~~erv~~eL~e~gl~~e~~g~~vpiVeISA 639 (1018)
|+|+++....+.. .++..+ .. .+.|+++++||+|+.. .+.+......... .++++++||
T Consensus 79 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa 149 (168)
T cd04119 79 VYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESK---------GFKYFETSA 149 (168)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHc---------CCeEEEEEC
Confidence 9999874322211 122222 11 4588999999999952 1223332222222 257999999
Q ss_pred CCCCChHHHHHHHHH
Q 001745 640 LKGEKVDDLLETIML 654 (1018)
Q Consensus 640 ktGeGIdeLleaIl~ 654 (1018)
++|.|+++++++|..
T Consensus 150 ~~~~gi~~l~~~l~~ 164 (168)
T cd04119 150 CTGEGVNEMFQTLFS 164 (168)
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999999999874
No 69
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.82 E-value=2e-19 Score=175.01 Aligned_cols=151 Identities=23% Similarity=0.264 Sum_probs=108.1
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVIL 571 (1018)
.+|+++|.+|+|||||+++|.+..+.....+ ++.+ .+...+.+++..+.+.+|||||++.|..++..+++.+|++++
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~-t~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~ 78 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDP-TIED--SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 78 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCC-cchh--eEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEE
Confidence 4799999999999999999998776543332 2221 223334456666778999999999999999999999999999
Q ss_pred EEecCCCCChhHH-HHHHHH----HHcCCCEEEEEecCCCCCCC--hHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCC
Q 001745 572 VVAADDGIRPQTN-EAIAHA----KAAGVPIVIAINKIDKDGAN--PERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (1018)
Q Consensus 572 VVDAddGv~~QT~-E~I~~a----k~~gIPIIVVINKiDL~~a~--~erv~~eL~e~gl~~e~~g~~vpiVeISAktGeG 644 (1018)
|+|+++....+.. ..+..+ ...++|+++++||+|+.... ..+........ .++++++||++|.|
T Consensus 79 v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~g 149 (162)
T cd04138 79 VFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSY---------GIPYIETSAKTRQG 149 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHh---------CCeEEEecCCCCCC
Confidence 9999874322221 112222 23478999999999996422 12222222222 25799999999999
Q ss_pred hHHHHHHHHH
Q 001745 645 VDDLLETIML 654 (1018)
Q Consensus 645 IdeLleaIl~ 654 (1018)
++++|++|..
T Consensus 150 i~~l~~~l~~ 159 (162)
T cd04138 150 VEEAFYTLVR 159 (162)
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 70
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.82 E-value=2.2e-19 Score=175.91 Aligned_cols=152 Identities=22% Similarity=0.281 Sum_probs=108.4
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVIL 571 (1018)
++|+++|.+|+|||||++++....+.....+ ++. ..+...+.+++....+.||||||++.|..++..+++.+|+++|
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~-t~~--~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 78 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDP-TIE--DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVL 78 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCC-chh--hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEE
Confidence 5899999999999999999998766533322 222 2333344456777789999999999999999999999999999
Q ss_pred EEecCCCCChhH-HHHHHHHH----HcCCCEEEEEecCCCCCCCh--HHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCC
Q 001745 572 VVAADDGIRPQT-NEAIAHAK----AAGVPIVIAINKIDKDGANP--ERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (1018)
Q Consensus 572 VVDAddGv~~QT-~E~I~~ak----~~gIPIIVVINKiDL~~a~~--erv~~eL~e~gl~~e~~g~~vpiVeISAktGeG 644 (1018)
|+|+++....+. ..++..+. ..++|+|+++||+|+..... ......+.. .+ .++++++||++|.|
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~~~~ 150 (163)
T cd04136 79 VYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALAR------QW--GCPFYETSAKSKIN 150 (163)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHH------Hc--CCeEEEecCCCCCC
Confidence 999987432221 12222222 23689999999999954211 111112221 12 26899999999999
Q ss_pred hHHHHHHHHH
Q 001745 645 VDDLLETIML 654 (1018)
Q Consensus 645 IdeLleaIl~ 654 (1018)
++++|++|..
T Consensus 151 v~~l~~~l~~ 160 (163)
T cd04136 151 VDEVFADLVR 160 (163)
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 71
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.82 E-value=2.8e-19 Score=176.07 Aligned_cols=152 Identities=22% Similarity=0.270 Sum_probs=108.3
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVIL 571 (1018)
.+|+|+|++|+|||||+++|.+..+.....+ ++.+ .+...+.+++....+.+|||||++.|..++..+++.+|++++
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~-t~~~--~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 77 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDP-TIED--SYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLL 77 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCC-chhh--hEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEE
Confidence 3799999999999999999998776543333 2222 223334456667889999999999999999999999999999
Q ss_pred EEecCCCCChhHH-HHHHHH----HHcCCCEEEEEecCCCCCCC---hHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCC
Q 001745 572 VVAADDGIRPQTN-EAIAHA----KAAGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (1018)
Q Consensus 572 VVDAddGv~~QT~-E~I~~a----k~~gIPIIVVINKiDL~~a~---~erv~~eL~e~gl~~e~~g~~vpiVeISAktGe 643 (1018)
|+|+++....+.. .++..+ ...++|+|+++||+|+.... .+......... .++++++||++|.
T Consensus 78 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~ 148 (164)
T smart00173 78 VYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQW---------GCPFLETSAKERV 148 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHc---------CCEEEEeecCCCC
Confidence 9999874222111 111111 22368999999999996422 12222222221 2679999999999
Q ss_pred ChHHHHHHHHHH
Q 001745 644 KVDDLLETIMLV 655 (1018)
Q Consensus 644 GIdeLleaIl~l 655 (1018)
|++++|++|...
T Consensus 149 ~i~~l~~~l~~~ 160 (164)
T smart00173 149 NVDEAFYDLVRE 160 (164)
T ss_pred CHHHHHHHHHHH
Confidence 999999999754
No 72
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.82 E-value=4.1e-19 Score=176.01 Aligned_cols=154 Identities=18% Similarity=0.218 Sum_probs=110.8
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEE
Q 001745 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (1018)
Q Consensus 491 ~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVI 570 (1018)
.++|+++|++|+|||||+++|....+..... .|....+....+.+++....+.|||||||+.|..++...++.+|+++
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~l 80 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQG--NTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 80 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCC--CccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence 4789999999999999999998776654332 33333333333445566678999999999999999999999999999
Q ss_pred EEEecCCCCChhHH-HHHHHHH---HcCCCEEEEEecCCCCCCC---hHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCC
Q 001745 571 IVVAADDGIRPQTN-EAIAHAK---AAGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (1018)
Q Consensus 571 LVVDAddGv~~QT~-E~I~~ak---~~gIPIIVVINKiDL~~a~---~erv~~eL~e~gl~~e~~g~~vpiVeISAktGe 643 (1018)
+|+|+++....+.. .++..+. ..++|+|+|+||+|+.... ...........+ ...++++||++|.
T Consensus 81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~e~Sa~~~~ 152 (165)
T cd01864 81 IAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNG--------MLAVLETSAKESQ 152 (165)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcC--------CcEEEEEECCCCC
Confidence 99999985432222 2222222 3478999999999996432 222222222222 2468999999999
Q ss_pred ChHHHHHHHHH
Q 001745 644 KVDDLLETIML 654 (1018)
Q Consensus 644 GIdeLleaIl~ 654 (1018)
|+++++++|..
T Consensus 153 ~v~~~~~~l~~ 163 (165)
T cd01864 153 NVEEAFLLMAT 163 (165)
T ss_pred CHHHHHHHHHH
Confidence 99999999864
No 73
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.82 E-value=5e-19 Score=173.62 Aligned_cols=151 Identities=18% Similarity=0.256 Sum_probs=108.7
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecC--CceecEEEEeCCCccchHHHHHhhhccCCEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVD--GKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~d--gk~~~ItfIDTPGHE~F~~~r~rg~~~ADiV 569 (1018)
.+|+++|++++|||||+++|....+.....+.++ ..+....+.+. +....++||||||++.|..++..+++.+|++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~ 78 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIG--VDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC 78 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEE--EEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEE
Confidence 3799999999999999999998776544333333 33333333333 5667899999999999999999999999999
Q ss_pred EEEEecCCCCChhHHHHH-HHHH--HcCCCEEEEEecCCCCCC---ChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCC
Q 001745 570 VIVVAADDGIRPQTNEAI-AHAK--AAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (1018)
Q Consensus 570 ILVVDAddGv~~QT~E~I-~~ak--~~gIPIIVVINKiDL~~a---~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGe 643 (1018)
++|+|+++....+....+ ..+. ..++|+|+++||+|+... ..++........ .++++++||++|.
T Consensus 79 v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~~~Sa~~~~ 149 (162)
T cd04106 79 ILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRL---------QLPLFRTSVKDDF 149 (162)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHc---------CCeEEEEECCCCC
Confidence 999999874333322222 2222 247999999999998532 222222222222 2579999999999
Q ss_pred ChHHHHHHHH
Q 001745 644 KVDDLLETIM 653 (1018)
Q Consensus 644 GIdeLleaIl 653 (1018)
|+++++++|.
T Consensus 150 ~v~~l~~~l~ 159 (162)
T cd04106 150 NVTELFEYLA 159 (162)
T ss_pred CHHHHHHHHH
Confidence 9999999985
No 74
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=99.82 E-value=7.4e-20 Score=166.83 Aligned_cols=83 Identities=46% Similarity=0.896 Sum_probs=80.0
Q ss_pred EeEEEEEEeec-CCceEEEEEEeeeeEeeCCcEEEeeCCEEEEEEEEeeeecccccccccccCceeEEEEccCCCCCCCC
Q 001745 908 GSAEVRAIFSS-GSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDLEEGD 986 (1018)
Q Consensus 908 G~A~V~~vF~~-~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~i~SLk~~k~dV~ev~~G~EcGi~i~~f~d~~~GD 986 (1018)
|+|+|+++|+. +.|+||||+|++|.+++|+.++|+|+++++|+|+|.||+|++++|.+|.+|+||||.|++|+||++||
T Consensus 1 g~~~V~~vf~~~~~g~vag~kV~~G~l~~g~~v~vlr~~~~~~~g~i~sl~~~~~~v~~a~~G~ecgi~l~~~~d~~~Gd 80 (84)
T cd03692 1 GEAEVRAVFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGEVIYEGKISSLKRFKDDVKEVKKGYECGITLENFNDIKVGD 80 (84)
T ss_pred CEEEEEEEEECCCCcEEEEEEEEECEEeCCCEEEEEcCCCEEEEEEEEEEEEcCcccCEECCCCEEEEEEeCcccCCCCC
Confidence 68999999985 45899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEE
Q 001745 987 IIEA 990 (1018)
Q Consensus 987 ~ie~ 990 (1018)
+|||
T Consensus 81 vi~~ 84 (84)
T cd03692 81 IIEA 84 (84)
T ss_pred EEEC
Confidence 9996
No 75
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.82 E-value=2.5e-19 Score=186.35 Aligned_cols=161 Identities=29% Similarity=0.396 Sum_probs=117.0
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCc---ccccccCCceeeeeeEEEEEe-----------------------cC--C----
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTK---VAAAEAGGITQGIGAYKVQVP-----------------------VD--G---- 539 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~---v~~~e~gGiTqdIga~~V~i~-----------------------~d--g---- 539 (1018)
.+|+++||.|||||||+.+|.... .......++|...++..+.+. .. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 379999999999999999997542 223334566666665544321 00 0
Q ss_pred ceecEEEEeCCCccchHHHHHhhhccCCEEEEEEecCCC-CChhHHHHHHHHHHcCC-CEEEEEecCCCCCCC-hHHHHH
Q 001745 540 KLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDG-IRPQTNEAIAHAKAAGV-PIVIAINKIDKDGAN-PERVMQ 616 (1018)
Q Consensus 540 k~~~ItfIDTPGHE~F~~~r~rg~~~ADiVILVVDAddG-v~~QT~E~I~~ak~~gI-PIIVVINKiDL~~a~-~erv~~ 616 (1018)
....++|||||||+.|...+.+++..+|++++|+|++++ ...++.+.+..+...++ |+|+++||+|+.... .....+
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~ 160 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKEEQALENYE 160 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCHHHHHHHHH
Confidence 126799999999999999999999999999999999984 67888888888877776 599999999996421 222223
Q ss_pred HHHhcCCCCCCCCCCCcEEEEecCCCCChHHHHHHHHH
Q 001745 617 ELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIML 654 (1018)
Q Consensus 617 eL~e~gl~~e~~g~~vpiVeISAktGeGIdeLleaIl~ 654 (1018)
.+.+.- .......+++|++||++|+||++|+++|..
T Consensus 161 ~i~~~~--~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~ 196 (203)
T cd01888 161 QIKKFV--KGTIAENAPIIPISAQLKYNIDVLLEYIVK 196 (203)
T ss_pred HHHHHH--hccccCCCcEEEEeCCCCCCHHHHHHHHHH
Confidence 332210 000112478999999999999999999864
No 76
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.82 E-value=7.1e-19 Score=181.49 Aligned_cols=155 Identities=19% Similarity=0.189 Sum_probs=113.7
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecC-CceecEEEEeCCCccchHHHHHhhhccCCEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVD-GKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~d-gk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVI 570 (1018)
.+|+++|.+|+|||||+++|.+..+..... .|.+..++...+.++ +..+.+.||||||++.|..++..+++.+|++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~--~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~i 78 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYK--ATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAI 78 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCC--CceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEE
Confidence 479999999999999999999877654333 354444444444455 66788999999999999999999999999999
Q ss_pred EEEecCCCCChhHHH-HHHHHH-------HcCCCEEEEEecCCCCC---CChHHHHHHHHhcCCCCCCCCCCCcEEEEec
Q 001745 571 IVVAADDGIRPQTNE-AIAHAK-------AAGVPIVIAINKIDKDG---ANPERVMQELSSIGLMPEDWGGDIPMVQISA 639 (1018)
Q Consensus 571 LVVDAddGv~~QT~E-~I~~ak-------~~gIPIIVVINKiDL~~---a~~erv~~eL~e~gl~~e~~g~~vpiVeISA 639 (1018)
+|||+++....+... ++..+. ..++|+|+|+||+|+.. ...+++.......++ .+++++||
T Consensus 79 lv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--------~~~~e~Sa 150 (201)
T cd04107 79 IVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGF--------IGWFETSA 150 (201)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCC--------ceEEEEeC
Confidence 999998743222221 111111 24689999999999952 234444444444332 46999999
Q ss_pred CCCCChHHHHHHHHHHH
Q 001745 640 LKGEKVDDLLETIMLVA 656 (1018)
Q Consensus 640 ktGeGIdeLleaIl~la 656 (1018)
++|.||+++|++|....
T Consensus 151 k~~~~v~e~f~~l~~~l 167 (201)
T cd04107 151 KEGINIEEAMRFLVKNI 167 (201)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999998644
No 77
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.81 E-value=3.3e-19 Score=178.87 Aligned_cols=155 Identities=21% Similarity=0.246 Sum_probs=108.4
Q ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCC
Q 001745 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTD 567 (1018)
Q Consensus 488 ~~r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~AD 567 (1018)
..+.++|+++|++|+|||||+++|....+.. ...|.++....+. ++ .+.+.+|||||++.|..++..++..+|
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~---~~~t~g~~~~~~~--~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d 83 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGEDIDT---ISPTLGFQIKTLE--YE--GYKLNIWDVGGQKTLRPYWRNYFESTD 83 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCCCC---cCCccccceEEEE--EC--CEEEEEEECCCCHHHHHHHHHHhCCCC
Confidence 3456899999999999999999998764421 1223333333333 23 467999999999999999999999999
Q ss_pred EEEEEEecCCCCCh-hHHHHH----HHHHHcCCCEEEEEecCCCCCCC-hHHHHHHHHhcCCCCCCCCCCCcEEEEecCC
Q 001745 568 IAVIVVAADDGIRP-QTNEAI----AHAKAAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (1018)
Q Consensus 568 iVILVVDAddGv~~-QT~E~I----~~ak~~gIPIIVVINKiDL~~a~-~erv~~eL~e~gl~~e~~g~~vpiVeISAkt 641 (1018)
++++|+|+++.... +....+ ......++|+++++||+|+.... .+++...+..... ....++++++||++
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~ 159 (173)
T cd04154 84 ALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKI----SSHHWRIQPCSAVT 159 (173)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCcccc----CCCceEEEeccCCC
Confidence 99999999885211 111222 22233578999999999996533 2333333322111 11246899999999
Q ss_pred CCChHHHHHHHH
Q 001745 642 GEKVDDLLETIM 653 (1018)
Q Consensus 642 GeGIdeLleaIl 653 (1018)
|.|++++|++|.
T Consensus 160 g~gi~~l~~~l~ 171 (173)
T cd04154 160 GEGLLQGIDWLV 171 (173)
T ss_pred CcCHHHHHHHHh
Confidence 999999999985
No 78
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.81 E-value=4.5e-19 Score=175.26 Aligned_cols=151 Identities=23% Similarity=0.284 Sum_probs=108.1
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVIL 571 (1018)
.+|+++|.+|+|||||++++....+.....+ ++.+ .+...+.+++..+.+.||||||++.|..++..+++.+|++|+
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~-t~~~--~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 78 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDP-TIED--SYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVL 78 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCC-cchh--eEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEE
Confidence 5899999999999999999997665433322 2222 223334456667889999999999999999999999999999
Q ss_pred EEecCCCCChhH-HHHHHHH----HHcCCCEEEEEecCCCCCC---ChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCC
Q 001745 572 VVAADDGIRPQT-NEAIAHA----KAAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (1018)
Q Consensus 572 VVDAddGv~~QT-~E~I~~a----k~~gIPIIVVINKiDL~~a---~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGe 643 (1018)
|+|.++....+. .+++..+ ...++|+|+++||+|+... ..+.. ..+.+. + .++++++||++|.
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~~~------~--~~~~~~~Sa~~~~ 149 (164)
T cd04175 79 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQG-QNLARQ------W--GCAFLETSAKAKI 149 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHH-HHHHHH------h--CCEEEEeeCCCCC
Confidence 999986432221 1222222 2257899999999999542 11222 222211 1 2579999999999
Q ss_pred ChHHHHHHHHH
Q 001745 644 KVDDLLETIML 654 (1018)
Q Consensus 644 GIdeLleaIl~ 654 (1018)
|++++|++|..
T Consensus 150 ~v~~~~~~l~~ 160 (164)
T cd04175 150 NVNEIFYDLVR 160 (164)
T ss_pred CHHHHHHHHHH
Confidence 99999999874
No 79
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.81 E-value=6.7e-19 Score=175.39 Aligned_cols=154 Identities=19% Similarity=0.162 Sum_probs=111.8
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEE
Q 001745 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (1018)
Q Consensus 491 ~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVI 570 (1018)
.++|+++|.+|+|||||+++|....+.....+ |..+.+....+.+.+....+.||||||++.|..++...++.+|++|
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~--t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i 80 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFIS--TIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII 80 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCccccc--CccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence 47899999999999999999998877554333 3333333333444666778999999999999999999999999999
Q ss_pred EEEecCCCCChhHH-HHHHHHH---HcCCCEEEEEecCCCCCC---ChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCC
Q 001745 571 IVVAADDGIRPQTN-EAIAHAK---AAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (1018)
Q Consensus 571 LVVDAddGv~~QT~-E~I~~ak---~~gIPIIVVINKiDL~~a---~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGe 643 (1018)
+|+|+++....+.. +++..+. ..++|+++++||+|+... ..++........ .++++++||++|.
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~ 151 (167)
T cd01867 81 LVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEY---------GIKFLETSAKANI 151 (167)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHc---------CCEEEEEeCCCCC
Confidence 99999874332221 2222222 246899999999999642 222322222222 2579999999999
Q ss_pred ChHHHHHHHHHH
Q 001745 644 KVDDLLETIMLV 655 (1018)
Q Consensus 644 GIdeLleaIl~l 655 (1018)
|++++|++|...
T Consensus 152 ~v~~~~~~i~~~ 163 (167)
T cd01867 152 NVEEAFFTLAKD 163 (167)
T ss_pred CHHHHHHHHHHH
Confidence 999999998754
No 80
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.81 E-value=5.4e-19 Score=184.93 Aligned_cols=154 Identities=16% Similarity=0.173 Sum_probs=113.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEEE
Q 001745 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIV 572 (1018)
Q Consensus 493 kVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVILV 572 (1018)
.|+++|..++|||||+.+|....+..... .|.+.+++...+.+++..+.+.||||+|++.|..++..+++.+|++|||
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~--~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlV 79 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACK--SGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILV 79 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCC--CcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEE
Confidence 48999999999999999999887764433 4555555555555677778999999999999999999999999999999
Q ss_pred EecCCCCChhHHH-HHHHHH---HcCCCEEEEEecCCCCCCCh--HHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCChH
Q 001745 573 VAADDGIRPQTNE-AIAHAK---AAGVPIVIAINKIDKDGANP--ERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVD 646 (1018)
Q Consensus 573 VDAddGv~~QT~E-~I~~ak---~~gIPIIVVINKiDL~~a~~--erv~~eL~e~gl~~e~~g~~vpiVeISAktGeGId 646 (1018)
||+++....+... ++..+. ..++|+|+|+||+|+..... .....++... . ..+.|+++||++|.||+
T Consensus 80 fDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~-----~--~~~~~~etSAktg~gV~ 152 (202)
T cd04120 80 YDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQ-----I--TGMRFCEASAKDNFNVD 152 (202)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHh-----c--CCCEEEEecCCCCCCHH
Confidence 9999854333322 222222 24689999999999953211 1111222211 0 12579999999999999
Q ss_pred HHHHHHHHH
Q 001745 647 DLLETIMLV 655 (1018)
Q Consensus 647 eLleaIl~l 655 (1018)
++|++|...
T Consensus 153 e~F~~l~~~ 161 (202)
T cd04120 153 EIFLKLVDD 161 (202)
T ss_pred HHHHHHHHH
Confidence 999999753
No 81
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.81 E-value=6.7e-19 Score=173.19 Aligned_cols=152 Identities=18% Similarity=0.165 Sum_probs=112.3
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVIL 571 (1018)
.+|+++|++++|||||+++|....+.....+.++.+ +....+.+++....+.|||||||+.|..++..+++.+|++|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~ 78 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVE--FGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALL 78 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee--EEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEE
Confidence 379999999999999999999877655444433333 333344456667789999999999999999999999999999
Q ss_pred EEecCCCCChhH----HHHHHHHHHcCCCEEEEEecCCCCCC---ChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCC
Q 001745 572 VVAADDGIRPQT----NEAIAHAKAAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (1018)
Q Consensus 572 VVDAddGv~~QT----~E~I~~ak~~gIPIIVVINKiDL~~a---~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGeG 644 (1018)
|+|+++....+. .+.+..+...++|+++++||+|+... ..++........ .++++++||++|.|
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~~ 149 (161)
T cd04113 79 VYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQEN---------GLLFLETSALTGEN 149 (161)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHc---------CCEEEEEECCCCCC
Confidence 999998543332 22223333458899999999999542 223333333322 25799999999999
Q ss_pred hHHHHHHHHH
Q 001745 645 VDDLLETIML 654 (1018)
Q Consensus 645 IdeLleaIl~ 654 (1018)
|+++|+++..
T Consensus 150 i~~~~~~~~~ 159 (161)
T cd04113 150 VEEAFLKCAR 159 (161)
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 82
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.81 E-value=7.5e-19 Score=174.71 Aligned_cols=153 Identities=19% Similarity=0.184 Sum_probs=110.3
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVIL 571 (1018)
.+|+++|.+|+|||||+++|.+..+.....+ |.++.+....+...+....+.||||||++.|..++...++.+|++++
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~ 79 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVS--TVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFIL 79 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCC--ceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEE
Confidence 5799999999999999999998876543333 43333333333345566789999999999999999999999999999
Q ss_pred EEecCCCCChh-HHHHHHHHHH---cCCCEEEEEecCCCCCCC---hHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCC
Q 001745 572 VVAADDGIRPQ-TNEAIAHAKA---AGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (1018)
Q Consensus 572 VVDAddGv~~Q-T~E~I~~ak~---~gIPIIVVINKiDL~~a~---~erv~~eL~e~gl~~e~~g~~vpiVeISAktGeG 644 (1018)
|+|+++....+ ..+++..+.. .+.|+++++||+|+.... .++..+....+ .++++++||++|.|
T Consensus 80 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~g 150 (165)
T cd01865 80 MYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQL---------GFEFFEASAKENIN 150 (165)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHc---------CCEEEEEECCCCCC
Confidence 99998732221 1222333332 367899999999995432 22222222222 25799999999999
Q ss_pred hHHHHHHHHHH
Q 001745 645 VDDLLETIMLV 655 (1018)
Q Consensus 645 IdeLleaIl~l 655 (1018)
+++||++|...
T Consensus 151 v~~l~~~l~~~ 161 (165)
T cd01865 151 VKQVFERLVDI 161 (165)
T ss_pred HHHHHHHHHHH
Confidence 99999999753
No 83
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.81 E-value=3.9e-19 Score=175.55 Aligned_cols=155 Identities=23% Similarity=0.279 Sum_probs=106.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCccc----ccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCE
Q 001745 493 VLTIMGHVDHGKTTLLDHIRKTKVA----AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (1018)
Q Consensus 493 kVaImGhvdvGKTTLLnrL~~~~v~----~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADi 568 (1018)
+|+++|++|+|||||+++|...... .......|.++....+.+ .+..+.|||||||+.|..++...+..+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV----GNARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE----CCEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 4899999999999999999754321 112223455554444433 24689999999999999999999999999
Q ss_pred EEEEEecCCCCC-hhHHHHHHHH----HHcCCCEEEEEecCCCCCCC-hHHHHHHHHhcCCCCCCCCCCCcEEEEecCCC
Q 001745 569 AVIVVAADDGIR-PQTNEAIAHA----KAAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (1018)
Q Consensus 569 VILVVDAddGv~-~QT~E~I~~a----k~~gIPIIVVINKiDL~~a~-~erv~~eL~e~gl~~e~~g~~vpiVeISAktG 642 (1018)
+++|+|+++.-. .+....+..+ ...++|+++++||+|+.... ..++...+..... ......++++++||++|
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Sa~~g 154 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAE--EIGRRDCLVLPVSALEG 154 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccc--cccCCceEEEEeeCCCC
Confidence 999999986321 1122222222 23579999999999986532 2333333322210 11112468999999999
Q ss_pred CChHHHHHHHH
Q 001745 643 EKVDDLLETIM 653 (1018)
Q Consensus 643 eGIdeLleaIl 653 (1018)
+|+++++++|.
T Consensus 155 ~gv~e~~~~l~ 165 (167)
T cd04160 155 TGVREGIEWLV 165 (167)
T ss_pred cCHHHHHHHHh
Confidence 99999999985
No 84
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.81 E-value=7.7e-19 Score=174.49 Aligned_cols=152 Identities=22% Similarity=0.203 Sum_probs=111.4
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVIL 571 (1018)
.+|+++|++++|||||+++|....+..... .|.+..+....+.+++..+.+.+|||||++.|..++..+++.+|++||
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 80 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCP--HTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 80 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCC--cccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 579999999999999999999877654332 243334433444456777889999999999999999999999999999
Q ss_pred EEecCCCCChhHH-HHHHHHH---HcCCCEEEEEecCCCCCC---ChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCC
Q 001745 572 VVAADDGIRPQTN-EAIAHAK---AAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (1018)
Q Consensus 572 VVDAddGv~~QT~-E~I~~ak---~~gIPIIVVINKiDL~~a---~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGeG 644 (1018)
|+|+++....+.. +++.... ..+.|+++++||+|+... ..++........ .++++++||++|.|
T Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~e~Sa~~~~~ 151 (166)
T cd04122 81 VYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADEN---------GLLFLECSAKTGEN 151 (166)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHc---------CCEEEEEECCCCCC
Confidence 9999984332222 2222222 246789999999999543 223333322222 35799999999999
Q ss_pred hHHHHHHHHH
Q 001745 645 VDDLLETIML 654 (1018)
Q Consensus 645 IdeLleaIl~ 654 (1018)
|+++|+.+..
T Consensus 152 i~e~f~~l~~ 161 (166)
T cd04122 152 VEDAFLETAK 161 (166)
T ss_pred HHHHHHHHHH
Confidence 9999998864
No 85
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.81 E-value=1.1e-18 Score=174.48 Aligned_cols=159 Identities=40% Similarity=0.610 Sum_probs=119.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCccccc----------------ccCCceeeeeeEEEEEecCCceecEEEEeCCCccchH
Q 001745 493 VLTIMGHVDHGKTTLLDHIRKTKVAAA----------------EAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFG 556 (1018)
Q Consensus 493 kVaImGhvdvGKTTLLnrL~~~~v~~~----------------e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~ 556 (1018)
+|+|+|.+|+|||||+++|........ ...++|.+.....+.. ....+.||||||+..|.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~liDtpG~~~~~ 76 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW----PDRRVNFIDTPGHEDFS 76 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee----CCEEEEEEeCCCcHHHH
Confidence 489999999999999999987654432 1234555544333332 34679999999999999
Q ss_pred HHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCC-CChHHHHHHHHh----cCCCC-----C
Q 001745 557 AMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDG-ANPERVMQELSS----IGLMP-----E 626 (1018)
Q Consensus 557 ~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~-a~~erv~~eL~e----~gl~~-----e 626 (1018)
..+..++..+|++++|+|+.++...+..+.+..+...+.|+++++||+|+.. ........++.+ .+... .
T Consensus 77 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (189)
T cd00881 77 SEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGT 156 (189)
T ss_pred HHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhc
Confidence 9999999999999999999999888888888888888999999999999964 333333333322 22100 0
Q ss_pred CCCCCCcEEEEecCCCCChHHHHHHHHHH
Q 001745 627 DWGGDIPMVQISALKGEKVDDLLETIMLV 655 (1018)
Q Consensus 627 ~~g~~vpiVeISAktGeGIdeLleaIl~l 655 (1018)
......+++++||++|.|+++++++|...
T Consensus 157 ~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~ 185 (189)
T cd00881 157 RNGLLVPIVPGSALTGIGVEELLEAIVEH 185 (189)
T ss_pred ccCCcceEEEEecccCcCHHHHHHHHHhh
Confidence 01235789999999999999999998743
No 86
>PTZ00369 Ras-like protein; Provisional
Probab=99.81 E-value=6.2e-19 Score=180.29 Aligned_cols=155 Identities=21% Similarity=0.206 Sum_probs=110.9
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEE
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiV 569 (1018)
..++|+|+|++|+|||||++++.+..+.....+ |.+. .+...+.+++..+.+.||||||++.|..++..+++.+|++
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~--t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~i 80 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDP--TIED-SYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGF 80 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCC--chhh-EEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEE
Confidence 457999999999999999999998776433322 2221 2233344567778899999999999999999999999999
Q ss_pred EEEEecCCCCChhH-HHHHHHH----HHcCCCEEEEEecCCCCCCC---hHHHHHHHHhcCCCCCCCCCCCcEEEEecCC
Q 001745 570 VIVVAADDGIRPQT-NEAIAHA----KAAGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (1018)
Q Consensus 570 ILVVDAddGv~~QT-~E~I~~a----k~~gIPIIVVINKiDL~~a~---~erv~~eL~e~gl~~e~~g~~vpiVeISAkt 641 (1018)
|+|+|+++....+. .+++..+ ...++|+|+++||+|+.... ..+.......+ .++++++||++
T Consensus 81 ilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~---------~~~~~e~Sak~ 151 (189)
T PTZ00369 81 LCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSF---------GIPFLETSAKQ 151 (189)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHh---------CCEEEEeeCCC
Confidence 99999987432121 2222222 22378999999999985432 22222222221 25799999999
Q ss_pred CCChHHHHHHHHHHH
Q 001745 642 GEKVDDLLETIMLVA 656 (1018)
Q Consensus 642 GeGIdeLleaIl~la 656 (1018)
|.||+++|++|....
T Consensus 152 ~~gi~~~~~~l~~~l 166 (189)
T PTZ00369 152 RVNVDEAFYELVREI 166 (189)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999997543
No 87
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.81 E-value=1.4e-19 Score=190.58 Aligned_cols=147 Identities=31% Similarity=0.488 Sum_probs=111.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCc-------------------------------ccccccCCceeeeeeEEEEEecCCce
Q 001745 493 VLTIMGHVDHGKTTLLDHIRKTK-------------------------------VAAAEAGGITQGIGAYKVQVPVDGKL 541 (1018)
Q Consensus 493 kVaImGhvdvGKTTLLnrL~~~~-------------------------------v~~~e~gGiTqdIga~~V~i~~dgk~ 541 (1018)
+|+|+||+|||||||+++|+... .......|+|++...+.+.. .+
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~----~~ 76 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFET----EK 76 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEee----CC
Confidence 48999999999999999985210 01123568888877766543 45
Q ss_pred ecEEEEeCCCccchHHHHHhhhccCCEEEEEEecCC-------CCChhHHHHHHHHHHcC-CCEEEEEecCCCCCC--C-
Q 001745 542 QPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADD-------GIRPQTNEAIAHAKAAG-VPIVIAINKIDKDGA--N- 610 (1018)
Q Consensus 542 ~~ItfIDTPGHE~F~~~r~rg~~~ADiVILVVDAdd-------Gv~~QT~E~I~~ak~~g-IPIIVVINKiDL~~a--~- 610 (1018)
+.++|||||||..|...+..++..+|++|+|+|+.+ +...|+.+++..+...+ .|+|+++||+|+... +
T Consensus 77 ~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~ 156 (219)
T cd01883 77 YRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSE 156 (219)
T ss_pred eEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccccccH
Confidence 789999999999999988899999999999999998 56778888888887777 469999999999732 2
Q ss_pred --hHHHHHHHH----hcCCCCCCCCCCCcEEEEecCCCCChHH
Q 001745 611 --PERVMQELS----SIGLMPEDWGGDIPMVQISALKGEKVDD 647 (1018)
Q Consensus 611 --~erv~~eL~----e~gl~~e~~g~~vpiVeISAktGeGIde 647 (1018)
.+++..++. ..++. ...++++++||++|.||++
T Consensus 157 ~~~~~i~~~l~~~l~~~~~~----~~~~~ii~iSA~tg~gi~~ 195 (219)
T cd01883 157 ERYDEIKKELSPFLKKVGYN----PKDVPFIPISGLTGDNLIE 195 (219)
T ss_pred HHHHHHHHHHHHHHHHcCCC----cCCceEEEeecCcCCCCCc
Confidence 233344332 22221 1257899999999999973
No 88
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.81 E-value=1.8e-19 Score=188.20 Aligned_cols=146 Identities=28% Similarity=0.431 Sum_probs=110.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCc-ccc------------------------------cccCCceeeeeeEEEEEecCCce
Q 001745 493 VLTIMGHVDHGKTTLLDHIRKTK-VAA------------------------------AEAGGITQGIGAYKVQVPVDGKL 541 (1018)
Q Consensus 493 kVaImGhvdvGKTTLLnrL~~~~-v~~------------------------------~e~gGiTqdIga~~V~i~~dgk~ 541 (1018)
+|+|+||+|||||||+++|+... ... ...+|+|++.....+. ..+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~----~~~ 76 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFS----TPK 76 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEe----cCC
Confidence 48999999999999999997432 111 1236788876654443 345
Q ss_pred ecEEEEeCCCccchHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCC-EEEEEecCCCCCCChH---HHHHH
Q 001745 542 QPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGANPE---RVMQE 617 (1018)
Q Consensus 542 ~~ItfIDTPGHE~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIP-IIVVINKiDL~~a~~e---rv~~e 617 (1018)
..++|||||||+.|...+..++..+|++|+|+|++++...++.+++..+...+.| +|+|+||+|+.....+ .+..+
T Consensus 77 ~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~ 156 (208)
T cd04166 77 RKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVAD 156 (208)
T ss_pred ceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHHHHH
Confidence 6799999999999988888889999999999999999999998888888777765 7889999999754433 22233
Q ss_pred HH----hcCCCCCCCCCCCcEEEEecCCCCChHHH
Q 001745 618 LS----SIGLMPEDWGGDIPMVQISALKGEKVDDL 648 (1018)
Q Consensus 618 L~----e~gl~~e~~g~~vpiVeISAktGeGIdeL 648 (1018)
+. .+++ ...++|++||++|.|+.+.
T Consensus 157 ~~~~~~~~~~------~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 157 YLAFAAKLGI------EDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHcCC------CCceEEEEeCCCCCCCccC
Confidence 32 2222 1357999999999999763
No 89
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.81 E-value=8.7e-19 Score=175.68 Aligned_cols=154 Identities=17% Similarity=0.152 Sum_probs=112.5
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVIL 571 (1018)
.+|+++|.+|+|||||++++....+.... ..|.++..+.+.+..++....+.+|||||++.|..++...+..+|++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 78 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKY--VATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAII 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEE
Confidence 47999999999999999999876654332 3455555555555556677889999999999999998899999999999
Q ss_pred EEecCCCCChhHHH-HHHHHHH--cCCCEEEEEecCCCCCCChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCChHHH
Q 001745 572 VVAADDGIRPQTNE-AIAHAKA--AGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDL 648 (1018)
Q Consensus 572 VVDAddGv~~QT~E-~I~~ak~--~gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGeGIdeL 648 (1018)
|+|+++....+... ++..+.. .++|+|+++||+|+...........+... ..++++++||++|.||+++
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~--------~~~~~~e~Sa~~~~~v~~~ 150 (166)
T cd00877 79 MFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQITFHRK--------KNLQYYEISAKSNYNFEKP 150 (166)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHHHHHHHHH--------cCCEEEEEeCCCCCChHHH
Confidence 99999754333222 2222222 27999999999999632221111122221 2467999999999999999
Q ss_pred HHHHHHH
Q 001745 649 LETIMLV 655 (1018)
Q Consensus 649 leaIl~l 655 (1018)
|++|...
T Consensus 151 f~~l~~~ 157 (166)
T cd00877 151 FLWLARK 157 (166)
T ss_pred HHHHHHH
Confidence 9999754
No 90
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.80 E-value=1.4e-18 Score=170.24 Aligned_cols=152 Identities=19% Similarity=0.214 Sum_probs=112.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEEE
Q 001745 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIV 572 (1018)
Q Consensus 493 kVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVILV 572 (1018)
+|+++|++++|||||+++|.+..+.....+.++.+.....+. +++....+.||||||++.|..++...++.+|++|+|
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v 79 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMY--LEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 79 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEE--ECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 799999999999999999998888766666666655444443 455567899999999999999999999999999999
Q ss_pred EecCCCCChhHH-HHHHHHH-Hc--CCCEEEEEecCCCCCCC--hHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCChH
Q 001745 573 VAADDGIRPQTN-EAIAHAK-AA--GVPIVIAINKIDKDGAN--PERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVD 646 (1018)
Q Consensus 573 VDAddGv~~QT~-E~I~~ak-~~--gIPIIVVINKiDL~~a~--~erv~~eL~e~gl~~e~~g~~vpiVeISAktGeGId 646 (1018)
+|+++....+.. .++..+. .. ++|+++++||+|+.... ..+....+... ..++++++||++|.|++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~--------~~~~~~~~Sa~~~~~v~ 151 (161)
T cd01861 80 YDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKE--------LNAMFIETSAKAGHNVK 151 (161)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHH--------hCCEEEEEeCCCCCCHH
Confidence 999875433332 2233222 23 48999999999994321 11222222221 12679999999999999
Q ss_pred HHHHHHHH
Q 001745 647 DLLETIML 654 (1018)
Q Consensus 647 eLleaIl~ 654 (1018)
+++++|..
T Consensus 152 ~l~~~i~~ 159 (161)
T cd01861 152 ELFRKIAS 159 (161)
T ss_pred HHHHHHHH
Confidence 99999864
No 91
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.80 E-value=1.2e-18 Score=172.52 Aligned_cols=153 Identities=19% Similarity=0.187 Sum_probs=110.7
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVIL 571 (1018)
.+|+|+|.+|+|||||+++|....+.....+.++.+ +....+.+.+....+.+|||||++.|..++..+++.+|++|+
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~ 80 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVD--FKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 80 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccee--EEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEE
Confidence 589999999999999999999877655444433333 333334445667789999999999999999999999999999
Q ss_pred EEecCCCCChhH-HHHHHHHHH---cCCCEEEEEecCCCCCCC---hHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCC
Q 001745 572 VVAADDGIRPQT-NEAIAHAKA---AGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (1018)
Q Consensus 572 VVDAddGv~~QT-~E~I~~ak~---~gIPIIVVINKiDL~~a~---~erv~~eL~e~gl~~e~~g~~vpiVeISAktGeG 644 (1018)
|+|+++...... .+++..+.. .++|+|+++||+|+.... .++........ .++++++||++|.|
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~~ 151 (166)
T cd01869 81 VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADEL---------GIPFLETSAKNATN 151 (166)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHc---------CCeEEEEECCCCcC
Confidence 999987322111 222222222 468999999999985432 22222222221 36899999999999
Q ss_pred hHHHHHHHHHH
Q 001745 645 VDDLLETIMLV 655 (1018)
Q Consensus 645 IdeLleaIl~l 655 (1018)
++++|++|...
T Consensus 152 v~~~~~~i~~~ 162 (166)
T cd01869 152 VEQAFMTMARE 162 (166)
T ss_pred HHHHHHHHHHH
Confidence 99999998754
No 92
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.80 E-value=1.8e-18 Score=171.04 Aligned_cols=155 Identities=26% Similarity=0.298 Sum_probs=111.1
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVIL 571 (1018)
.+|+++|++|+|||||+++|.+..+.......++.+ +....+.+.+....+.||||||++.|..++..+++.+|++|+
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 78 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGAD--FLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVL 78 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceE--EEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEE
Confidence 379999999999999999999877654433322322 333334456666788999999999999999999999999999
Q ss_pred EEecCCCCChhHHHHH-HH-HHH------cCCCEEEEEecCCCCCC---ChHHHHHHHHhcCCCCCCCCCCCcEEEEecC
Q 001745 572 VVAADDGIRPQTNEAI-AH-AKA------AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (1018)
Q Consensus 572 VVDAddGv~~QT~E~I-~~-ak~------~gIPIIVVINKiDL~~a---~~erv~~eL~e~gl~~e~~g~~vpiVeISAk 640 (1018)
|+|+++....+....+ .. +.. .++|+++++||+|+... ..+.....+...+ .++++++||+
T Consensus 79 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~ 150 (172)
T cd01862 79 VYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNG--------NIPYFETSAK 150 (172)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcC--------CceEEEEECC
Confidence 9999874332222111 11 111 27899999999999631 2333333333332 3679999999
Q ss_pred CCCChHHHHHHHHHHH
Q 001745 641 KGEKVDDLLETIMLVA 656 (1018)
Q Consensus 641 tGeGIdeLleaIl~la 656 (1018)
+|.|+++++++|...+
T Consensus 151 ~~~gv~~l~~~i~~~~ 166 (172)
T cd01862 151 EAINVEQAFETIARKA 166 (172)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999997543
No 93
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.80 E-value=9.5e-19 Score=176.82 Aligned_cols=152 Identities=22% Similarity=0.263 Sum_probs=111.6
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEE
Q 001745 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (1018)
Q Consensus 491 ~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVI 570 (1018)
..+|+++|..|+|||||+.++....+..... .|... .+...+.+++....++||||||++.|..++..++..+|++|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~--~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~i 78 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHD--PTIED-AYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFI 78 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcC--Ccccc-eEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEE
Confidence 4689999999999999999999877653322 23321 22333455677788999999999999999999999999999
Q ss_pred EEEecCCCCChhHHH----HHHHHH-HcCCCEEEEEecCCCCCC---ChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCC
Q 001745 571 IVVAADDGIRPQTNE----AIAHAK-AAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (1018)
Q Consensus 571 LVVDAddGv~~QT~E----~I~~ak-~~gIPIIVVINKiDL~~a---~~erv~~eL~e~gl~~e~~g~~vpiVeISAktG 642 (1018)
+|+|+++....+... .+.... ..++|+|+|+||+|+... +.++........ ++++++|||++|
T Consensus 79 lv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~---------~~~~~e~Sa~~~ 149 (172)
T cd04141 79 ICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREF---------NCPFFETSAALR 149 (172)
T ss_pred EEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHh---------CCEEEEEecCCC
Confidence 999999865544432 222222 247899999999998532 122222221121 368999999999
Q ss_pred CChHHHHHHHHH
Q 001745 643 EKVDDLLETIML 654 (1018)
Q Consensus 643 eGIdeLleaIl~ 654 (1018)
.||+++|++|..
T Consensus 150 ~~v~~~f~~l~~ 161 (172)
T cd04141 150 HYIDDAFHGLVR 161 (172)
T ss_pred CCHHHHHHHHHH
Confidence 999999999974
No 94
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.80 E-value=1.3e-18 Score=177.27 Aligned_cols=161 Identities=24% Similarity=0.290 Sum_probs=111.4
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEec-CCceecEEEEeCCCccchHHHHHhhhccCCE
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPV-DGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~-dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADi 568 (1018)
...+|+++|++|+|||||+++|....+... . .|.++..+.+.+.. ++....+.||||||++.|..++..+++.+|+
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~--~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 78 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-V--PTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDG 78 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-C--CccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCE
Confidence 356899999999999999999987665422 2 23334444444433 3356789999999999999999999999999
Q ss_pred EEEEEecCCCCChhH-----HHHHHHHHHcCCCEEEEEecCCCCCC-ChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCC
Q 001745 569 AVIVVAADDGIRPQT-----NEAIAHAKAAGVPIVIAINKIDKDGA-NPERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (1018)
Q Consensus 569 VILVVDAddGv~~QT-----~E~I~~ak~~gIPIIVVINKiDL~~a-~~erv~~eL~e~gl~~e~~g~~vpiVeISAktG 642 (1018)
+|+|+|+++....+. .+........++|+++++||+|+... ..+.+...+.-..+.. ...++++++||++|
T Consensus 79 ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~SA~~~ 155 (183)
T cd04152 79 IVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSA---STPWHVQPACAIIG 155 (183)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCC---CCceEEEEeecccC
Confidence 999999987422111 12222333457999999999999643 2233322221111110 11357899999999
Q ss_pred CChHHHHHHHHHHH
Q 001745 643 EKVDDLLETIMLVA 656 (1018)
Q Consensus 643 eGIdeLleaIl~la 656 (1018)
+||++|+++|....
T Consensus 156 ~gi~~l~~~l~~~l 169 (183)
T cd04152 156 EGLQEGLEKLYEMI 169 (183)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999987543
No 95
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=8.5e-19 Score=202.65 Aligned_cols=301 Identities=23% Similarity=0.284 Sum_probs=225.1
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcc------------------cccccCCceeeeeeEEEEEecCCceecEEEEeCCC
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKV------------------AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG 551 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v------------------~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPG 551 (1018)
+..+|.|+-|.++|||||.++++.... ......|||+...+..+. +..+++++|||||
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~----w~~~~iNiIDTPG 113 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFT----WRDYRINIIDTPG 113 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeee----eccceeEEecCCC
Confidence 567899999999999999998763211 112345777776665544 3468899999999
Q ss_pred ccchHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHhc-C--------
Q 001745 552 HEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-G-------- 622 (1018)
Q Consensus 552 HE~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e~-g-------- 622 (1018)
|-+|+....|.++..|++|+|+|+..|+..||.-.+++++..++|.|.++||+|..++++-+.++++... .
T Consensus 114 HvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa~~~~~l~~i~~kl~~~~a~vqi 193 (721)
T KOG0465|consen 114 HVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGASPFRTLNQIRTKLNHKPAVVQI 193 (721)
T ss_pred ceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCCChHHHHHHHHhhcCCchheeEc
Confidence 9999999999999999999999999999999999999999999999999999999888776655554321 0
Q ss_pred ----------C-------------------------------------------------------CCCC----------
Q 001745 623 ----------L-------------------------------------------------------MPED---------- 627 (1018)
Q Consensus 623 ----------l-------------------------------------------------------~~e~---------- 627 (1018)
+ ..+.
T Consensus 194 Pig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee~~ps~~~l~~aI 273 (721)
T KOG0465|consen 194 PIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEMFLEEEEPSAQQLKAAI 273 (721)
T ss_pred cccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCCCHHHHHHHH
Confidence 0 0000
Q ss_pred -----CCCCCcEEEEecCCCCChHHHHHHHHHHHH----Hhhhh--------------cCCC-CCCcceEEEEeeecCCC
Q 001745 628 -----WGGDIPMVQISALKGEKVDDLLETIMLVAE----LQELK--------------ANPH-RNAKGTVIEAGLHKSKG 683 (1018)
Q Consensus 628 -----~g~~vpiVeISAktGeGIdeLleaIl~lae----l~~lk--------------~~p~-r~~~g~ViEs~~dkg~G 683 (1018)
-+.-+|++.-||+.+.||.-|+++++.... ..... ..++ .++.|..+.....+. |
T Consensus 274 Rr~Ti~r~fvPVl~GSAlKNkGVQPlLDAVvdYLPsP~Ev~n~a~~ke~~~~ekv~l~~~~d~~Pfv~LAFKle~g~f-G 352 (721)
T KOG0465|consen 274 RRATIKRSFVPVLCGSALKNKGVQPLLDAVVDYLPSPSEVENYALNKETNSKEKVTLSPSRDKDPFVALAFKLEEGRF-G 352 (721)
T ss_pred HHHHhhcceeeEEechhhcccCcchHHHHHHHhCCChhhhcccccccCCCCccceEeccCCCCCceeeeEEEeeecCc-c
Confidence 023378999999999999999999975321 11110 1122 277777787777666 9
Q ss_pred cEEEEEeEeeEEecCCEEEEccc--eeEEE---EEeccCCCcccccCCCccEEEeccCCCCCCCCeEEEecChHHHHHHH
Q 001745 684 PVATFILQNGTLKKGDVVVCGEA--FGKVR---ALFDDSGNRVDEAGPSIPVQIIGLNGVPIAGDEFEVVDSLDVAREKA 758 (1018)
Q Consensus 684 ~VatglV~~GtLkvGD~Vv~G~~--~gKVR---aI~~~~g~~V~eA~pg~~V~V~Gl~~vP~aGd~~~vv~~e~~Ar~~a 758 (1018)
...+++|++|+|+.||+|+--.. ..||- .|+.+.-+.|+++.+|+.+.+.|++. ..||.|.--.
T Consensus 353 qLTyvRvYqG~L~kG~~iyN~rtgKKvrv~RL~rmHa~~medV~~v~AG~I~alfGidc--asGDTftd~~--------- 421 (721)
T KOG0465|consen 353 QLTYVRVYQGTLSKGDTIYNVRTGKKVRVGRLVRMHANDMEDVNEVLAGDICALFGIDC--ASGDTFTDKQ--------- 421 (721)
T ss_pred ceEEEEEeeeeecCCcEEEecCCCceeEhHHHhHhcccccchhhhhhccceeeeecccc--ccCceeccCc---------
Confidence 99999999999999999998543 22332 34445567899999999999999964 5899885211
Q ss_pred HHHHHHHHHHHHhhhcCCCccchhhhHHHhhcCccCCCCcceeeEEEEcCCCccHHHHHHHHHhCCCCCeEEEEE
Q 001745 759 EARAFSLRNERISAKAGDGKVTLSSLASAVSAGKLSGLDLHQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFL 833 (1018)
Q Consensus 759 ~~r~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~vIiKaDv~GSlEAi~~~L~~l~~~~v~i~ii 833 (1018)
....+++.+ .+-.+.+.+-||+-+.-+.++...+|..+..++..+++-
T Consensus 422 -----------------~~~~~m~si----------~vPePVis~aikP~~k~d~~~fskaL~rf~~EDPtFrv~ 469 (721)
T KOG0465|consen 422 -----------------NLALSMESI----------HIPEPVISVAIKPVNKKDADNFSKALNRFTKEDPTFRVS 469 (721)
T ss_pred -----------------cccceeeee----------ecCCCeeEEEecccccccHHHHHHHHHhhcccCCceEEE
Confidence 011222222 112356788899999999999999999999998887754
No 96
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.80 E-value=2e-18 Score=172.44 Aligned_cols=153 Identities=18% Similarity=0.152 Sum_probs=111.8
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVIL 571 (1018)
.+|+|+|++|+|||||+++|....+.......++.++ ....+..++....+.||||||++.|..++..+++.+|++||
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~ 82 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEF--GARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 82 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeE--EEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 6899999999999999999998776554443333333 33334446666789999999999999999999999999999
Q ss_pred EEecCCCCChhHH-HHHHHHHH---cCCCEEEEEecCCCCC---CChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCC
Q 001745 572 VVAADDGIRPQTN-EAIAHAKA---AGVPIVIAINKIDKDG---ANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (1018)
Q Consensus 572 VVDAddGv~~QT~-E~I~~ak~---~gIPIIVVINKiDL~~---a~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGeG 644 (1018)
|+|+++....+.. .++..++. .++|+|+++||+|+.. .+.++........ .++++++||++|.|
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~e~Sa~~~~~ 153 (168)
T cd01866 83 VYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEH---------GLIFMETSAKTASN 153 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHc---------CCEEEEEeCCCCCC
Confidence 9999874332222 22222322 4789999999999963 2233333333332 25699999999999
Q ss_pred hHHHHHHHHHH
Q 001745 645 VDDLLETIMLV 655 (1018)
Q Consensus 645 IdeLleaIl~l 655 (1018)
|+++|+++...
T Consensus 154 i~~~~~~~~~~ 164 (168)
T cd01866 154 VEEAFINTAKE 164 (168)
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 97
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.80 E-value=1.6e-18 Score=172.43 Aligned_cols=151 Identities=16% Similarity=0.226 Sum_probs=107.3
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVIL 571 (1018)
.+|+++|++|+|||||++++....+.....+ |.. ..+...+..++....+.||||||++.|..++..++..+|++|+
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~--t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 78 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIP--TIE-DTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL 78 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCC--cch-heEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEE
Confidence 5799999999999999999998776533322 222 1223333345566789999999999999999889999999999
Q ss_pred EEecCCCCChhH-HHHHHHHHH------cCCCEEEEEecCCCCCCC---hHHHHHHHHhcCCCCCCCCCCCcEEEEecCC
Q 001745 572 VVAADDGIRPQT-NEAIAHAKA------AGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (1018)
Q Consensus 572 VVDAddGv~~QT-~E~I~~ak~------~gIPIIVVINKiDL~~a~---~erv~~eL~e~gl~~e~~g~~vpiVeISAkt 641 (1018)
|+|+++....+. ..++..++. .++|+|+|+||+|+.... .......... + .++++++||++
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-------~--~~~~~e~SA~~ 149 (165)
T cd04140 79 VYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATE-------W--NCAFMETSAKT 149 (165)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHH-------h--CCcEEEeecCC
Confidence 999987543322 222222222 468999999999995421 1111111111 1 36799999999
Q ss_pred CCChHHHHHHHHH
Q 001745 642 GEKVDDLLETIML 654 (1018)
Q Consensus 642 GeGIdeLleaIl~ 654 (1018)
|.||+++|++|+.
T Consensus 150 g~~v~~~f~~l~~ 162 (165)
T cd04140 150 NHNVQELFQELLN 162 (165)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999999874
No 98
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.80 E-value=1.5e-18 Score=172.52 Aligned_cols=154 Identities=25% Similarity=0.278 Sum_probs=112.4
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEE
Q 001745 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (1018)
Q Consensus 491 ~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVI 570 (1018)
..+|+++|++|+|||||+++|....+.....+ |.+..+....+.+++....+.||||||++.|..++..+++.+|++|
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNKFDTQLFH--TIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCcCcCC--ceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 36899999999999999999998776544333 3333344444555777888999999999999999999999999999
Q ss_pred EEEecCCCCChhHH-----HHHHHHH---HcCCCEEEEEecCCCCCC--ChHHHHHHHHhcCCCCCCCCCCCcEEEEecC
Q 001745 571 IVVAADDGIRPQTN-----EAIAHAK---AAGVPIVIAINKIDKDGA--NPERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (1018)
Q Consensus 571 LVVDAddGv~~QT~-----E~I~~ak---~~gIPIIVVINKiDL~~a--~~erv~~eL~e~gl~~e~~g~~vpiVeISAk 640 (1018)
+|+|+++....+.. +.+.+.. ..++|+++++||+|+... ..+++.+...+++ ..+++++||+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~e~Sa~ 154 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENG--------DYPYFETSAK 154 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCC--------CCeEEEEECC
Confidence 99999974322222 1122211 146899999999998532 2333333333332 2479999999
Q ss_pred CCCChHHHHHHHHH
Q 001745 641 KGEKVDDLLETIML 654 (1018)
Q Consensus 641 tGeGIdeLleaIl~ 654 (1018)
+|.|+.++|+.++.
T Consensus 155 ~~~~v~~~~~~~~~ 168 (170)
T cd04116 155 DATNVAAAFEEAVR 168 (170)
T ss_pred CCCCHHHHHHHHHh
Confidence 99999999999864
No 99
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.80 E-value=1.2e-18 Score=168.60 Aligned_cols=146 Identities=24% Similarity=0.378 Sum_probs=111.3
Q ss_pred EEEeCCCCCHHHHHHHHHcCccc-ccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHH--------HHHhhhcc
Q 001745 495 TIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGA--------MRARGARV 565 (1018)
Q Consensus 495 aImGhvdvGKTTLLnrL~~~~v~-~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~--------~r~rg~~~ 565 (1018)
+++|++|+|||||+++|.+.+.. .....++|++.....+.. .++.+.||||||+..+.. .....+..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~ 76 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEW----GGREFILIDTGGIEPDDEGISKEIREQAELAIEE 76 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEE----CCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHh
Confidence 58999999999999999976532 344567777655444433 336799999999988654 33456788
Q ss_pred CCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCCh
Q 001745 566 TDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKV 645 (1018)
Q Consensus 566 ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGeGI 645 (1018)
+|++++|+|+.++......+.+..++..+.|+++++||+|+...... ...+...+. .+++++||++|.|+
T Consensus 77 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~--~~~~~~~~~--------~~~~~~Sa~~~~gv 146 (157)
T cd01894 77 ADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE--AAEFYSLGF--------GEPIPISAEHGRGI 146 (157)
T ss_pred CCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH--HHHHHhcCC--------CCeEEEecccCCCH
Confidence 99999999999887777777778888889999999999999654322 233333221 26899999999999
Q ss_pred HHHHHHHHH
Q 001745 646 DDLLETIML 654 (1018)
Q Consensus 646 deLleaIl~ 654 (1018)
++++++|..
T Consensus 147 ~~l~~~l~~ 155 (157)
T cd01894 147 GDLLDAILE 155 (157)
T ss_pred HHHHHHHHh
Confidence 999999864
No 100
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.80 E-value=5.9e-19 Score=187.55 Aligned_cols=162 Identities=27% Similarity=0.404 Sum_probs=117.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccc--------------cCCceeeeeeEEEEEe--------------------cC
Q 001745 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAE--------------AGGITQGIGAYKVQVP--------------------VD 538 (1018)
Q Consensus 493 kVaImGhvdvGKTTLLnrL~~~~v~~~e--------------~gGiTqdIga~~V~i~--------------------~d 538 (1018)
+|+++||.++|||||+++|....+..+. ..|+|..+....+.+. +.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 4789999999999999999865442211 1344432211111110 11
Q ss_pred CceecEEEEeCCCccchHHHHHhhhc--cCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCC-ChHHHH
Q 001745 539 GKLQPCVFLDTPGHEAFGAMRARGAR--VTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGA-NPERVM 615 (1018)
Q Consensus 539 gk~~~ItfIDTPGHE~F~~~r~rg~~--~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a-~~erv~ 615 (1018)
..++.++|+|||||+.|...+.+++. .+|++++|+|++++..+++.+++..+...++|+|+++||+|+... ...+..
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~~~~~~~~~ 160 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAPANILQETL 160 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccCHHHHHHHH
Confidence 23467999999999999988888875 799999999999999999999999999999999999999998542 223333
Q ss_pred HHHHhc----CCC-----------------CCCCCCCCcEEEEecCCCCChHHHHHHHHH
Q 001745 616 QELSSI----GLM-----------------PEDWGGDIPMVQISALKGEKVDDLLETIML 654 (1018)
Q Consensus 616 ~eL~e~----gl~-----------------~e~~g~~vpiVeISAktGeGIdeLleaIl~ 654 (1018)
.++... +.. ...|...+|+|++||.+|+|+++|...|..
T Consensus 161 ~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 161 KDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 333322 111 013445679999999999999999988854
No 101
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.80 E-value=6.1e-19 Score=172.68 Aligned_cols=152 Identities=18% Similarity=0.230 Sum_probs=103.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEEE
Q 001745 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIV 572 (1018)
Q Consensus 493 kVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVILV 572 (1018)
+|+++|.+++|||||+++|......... ...|.+.....+ ......++||||||++.|..++..++..+|++|+|
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~-~~~t~g~~~~~~----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 75 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQI-IVPTVGFNVESF----EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFV 75 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcce-ecCccccceEEE----EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEE
Confidence 4899999999999999999876432211 112333222222 23457899999999999999999999999999999
Q ss_pred EecCCCCChh-HHHHHHHH------HHcCCCEEEEEecCCCCCCCh-HHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCC
Q 001745 573 VAADDGIRPQ-TNEAIAHA------KAAGVPIVIAINKIDKDGANP-ERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (1018)
Q Consensus 573 VDAddGv~~Q-T~E~I~~a------k~~gIPIIVVINKiDL~~a~~-erv~~eL~e~gl~~e~~g~~vpiVeISAktGeG 644 (1018)
+|+++..... ....+..+ ...++|+++++||+|+..... .++...+....+ ....++++++||++|.|
T Consensus 76 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~----~~~~~~~~~~Sa~~g~g 151 (162)
T cd04157 76 IDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENI----KDKPWHIFASNALTGEG 151 (162)
T ss_pred EeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccc----cCceEEEEEeeCCCCCc
Confidence 9998754321 11222222 124799999999999965432 223222211111 11235689999999999
Q ss_pred hHHHHHHHH
Q 001745 645 VDDLLETIM 653 (1018)
Q Consensus 645 IdeLleaIl 653 (1018)
++++|++|.
T Consensus 152 v~~~~~~l~ 160 (162)
T cd04157 152 LDEGVQWLQ 160 (162)
T ss_pred hHHHHHHHh
Confidence 999999985
No 102
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.80 E-value=1.6e-18 Score=178.19 Aligned_cols=162 Identities=19% Similarity=0.216 Sum_probs=112.3
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEE
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiV 569 (1018)
+..+|+++|+.++|||||+.++....+..... .|... .+...+.+++..+.+.||||+|++.|..++..+++.+|++
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~--~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ 78 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYI--PTVFD-NYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVF 78 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCC--CceEe-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEE
Confidence 34689999999999999999999877754332 34332 2333344577788999999999999999999999999999
Q ss_pred EEEEecCCCCChhHHH--HHHHHH--HcCCCEEEEEecCCCCCCChHHHHHHHHhcCCCC---------CCCCCCCcEEE
Q 001745 570 VIVVAADDGIRPQTNE--AIAHAK--AAGVPIVIAINKIDKDGANPERVMQELSSIGLMP---------EDWGGDIPMVQ 636 (1018)
Q Consensus 570 ILVVDAddGv~~QT~E--~I~~ak--~~gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~---------e~~g~~vpiVe 636 (1018)
|+|||+++....+... ++..+. ..++|+|+|+||+|+.+... ....+...+... ....+.+++++
T Consensus 79 ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~--~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e 156 (191)
T cd01875 79 IICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDAD--TLKKLKEQGQAPITPQQGGALAKQIHAVKYLE 156 (191)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChh--hHHHHhhccCCCCCHHHHHHHHHHcCCcEEEE
Confidence 9999999844333321 122222 24789999999999954321 011111111000 00012357999
Q ss_pred EecCCCCChHHHHHHHHHHH
Q 001745 637 ISALKGEKVDDLLETIMLVA 656 (1018)
Q Consensus 637 ISAktGeGIdeLleaIl~la 656 (1018)
+||++|.||+++|++|....
T Consensus 157 ~SAk~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 157 CSALNQDGVKEVFAEAVRAV 176 (191)
T ss_pred eCCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998543
No 103
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=6.4e-19 Score=181.63 Aligned_cols=157 Identities=22% Similarity=0.234 Sum_probs=123.3
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCE
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADi 568 (1018)
.+.++|.++|+.|+|||+|+.+|....+... ...|+++.+....+.++++..++++|||+|||+|..+...+++.|++
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~--~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahG 84 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTES--YISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 84 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchh--hcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCe
Confidence 3567999999999999999999998887644 45677777777777789999999999999999999999999999999
Q ss_pred EEEEEecCCCCC----hhHHHHHHHHHHcCCCEEEEEecCCCCCC---ChHHHHHHHHhcCCCCCCCCCCCc-EEEEecC
Q 001745 569 AVIVVAADDGIR----PQTNEAIAHAKAAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIP-MVQISAL 640 (1018)
Q Consensus 569 VILVVDAddGv~----~QT~E~I~~ak~~gIPIIVVINKiDL~~a---~~erv~~eL~e~gl~~e~~g~~vp-iVeISAk 640 (1018)
+|+|||+++.-. .+|++-+......++|.++|+||+|+.+. ..+.......+++ .+ |+++|||
T Consensus 85 ii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~---------~~~f~ETSAK 155 (205)
T KOG0084|consen 85 IIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELG---------IPIFLETSAK 155 (205)
T ss_pred EEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcC---------CcceeecccC
Confidence 999999998332 23333333334467899999999999542 2233322222332 45 9999999
Q ss_pred CCCChHHHHHHHHHHH
Q 001745 641 KGEKVDDLLETIMLVA 656 (1018)
Q Consensus 641 tGeGIdeLleaIl~la 656 (1018)
++.|+++.|..|....
T Consensus 156 ~~~NVe~~F~~la~~l 171 (205)
T KOG0084|consen 156 DSTNVEDAFLTLAKEL 171 (205)
T ss_pred CccCHHHHHHHHHHHH
Confidence 9999999999987543
No 104
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.80 E-value=1.4e-18 Score=176.26 Aligned_cols=159 Identities=18% Similarity=0.209 Sum_probs=110.3
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVIL 571 (1018)
.+|+++|..++|||||+.+|....+.....+ |... .+...+.+++..+.+.||||+|++.|..++..+++.+|++||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~p--t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~il 78 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVP--TVFD-NYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 78 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCC--ceee-eeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEE
Confidence 5799999999999999999998877543333 3322 223334456777889999999999999999999999999999
Q ss_pred EEecCCCCChhHH-H-HHHHHHH--cCCCEEEEEecCCCCCCChHHHHHHHHhcC--CCC-------CCCCCCCcEEEEe
Q 001745 572 VVAADDGIRPQTN-E-AIAHAKA--AGVPIVIAINKIDKDGANPERVMQELSSIG--LMP-------EDWGGDIPMVQIS 638 (1018)
Q Consensus 572 VVDAddGv~~QT~-E-~I~~ak~--~gIPIIVVINKiDL~~a~~erv~~eL~e~g--l~~-------e~~g~~vpiVeIS 638 (1018)
|+|+++....+.. + ++..+.. .++|+|+++||+|+.... .....+.... ... ....+.+.|+++|
T Consensus 79 v~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~--~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~S 156 (175)
T cd01874 79 CFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP--STIEKLAKNKQKPITPETGEKLARDLKAVKYVECS 156 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhCh--hhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEec
Confidence 9999885433322 1 2222322 368999999999985421 1111111100 000 0001236899999
Q ss_pred cCCCCChHHHHHHHHHH
Q 001745 639 ALKGEKVDDLLETIMLV 655 (1018)
Q Consensus 639 AktGeGIdeLleaIl~l 655 (1018)
|++|.||+++|+.++..
T Consensus 157 A~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 157 ALTQKGLKNVFDEAILA 173 (175)
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 99999999999998764
No 105
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.80 E-value=2e-18 Score=170.73 Aligned_cols=151 Identities=19% Similarity=0.215 Sum_probs=102.4
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchH---------HHHHhh
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFG---------AMRARG 562 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~---------~~r~rg 562 (1018)
|+|+++|++|+|||||+++|.+..+.....+++|.++....+. ..+..++||||||+.... ......
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 76 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFD----YKYLRWQVIDTPGLLDRPLEERNTIEMQAITAL 76 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEc----cCceEEEEEECCCcCCccccCCchHHHHHHHHH
Confidence 6899999999999999999998776555556667665443332 234689999999984211 111111
Q ss_pred hccCCEEEEEEecCCCCC---hhHHHHHHHHHHc--CCCEEEEEecCCCCCCChHHHHHHHHhcCCCCCCCCCCCcEEEE
Q 001745 563 ARVTDIAVIVVAADDGIR---PQTNEAIAHAKAA--GVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQI 637 (1018)
Q Consensus 563 ~~~ADiVILVVDAddGv~---~QT~E~I~~ak~~--gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~e~~g~~vpiVeI 637 (1018)
...+|++|+|+|+++... ....+.+..++.. +.|+|+++||+|+..........++... ...+++++
T Consensus 77 ~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~--------~~~~~~~~ 148 (168)
T cd01897 77 AHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSEIEEEEEL--------EGEEVLKI 148 (168)
T ss_pred HhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHHHHHhhhh--------ccCceEEE
Confidence 234799999999987432 2223445555544 7999999999999543221111121111 24679999
Q ss_pred ecCCCCChHHHHHHHHH
Q 001745 638 SALKGEKVDDLLETIML 654 (1018)
Q Consensus 638 SAktGeGIdeLleaIl~ 654 (1018)
||++|.|+++++++|..
T Consensus 149 Sa~~~~gi~~l~~~l~~ 165 (168)
T cd01897 149 STLTEEGVDEVKNKACE 165 (168)
T ss_pred EecccCCHHHHHHHHHH
Confidence 99999999999999864
No 106
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.80 E-value=1.3e-18 Score=178.01 Aligned_cols=153 Identities=20% Similarity=0.228 Sum_probs=112.9
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVIL 571 (1018)
.+|+++|+.++|||||+.++....+.....+ |.+.. +...+.+++..+.+.||||+|++.|..++..+++.+|++||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~--Ti~~~-~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~il 78 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIP--TVFDN-FSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 78 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCC--cceee-eEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEE
Confidence 4799999999999999999998877544333 44322 33445567778899999999999999999999999999999
Q ss_pred EEecCCCCChhHH--HHHHHHHH--cCCCEEEEEecCCCCCC-------------ChHHHHHHHHhcCCCCCCCCCCCcE
Q 001745 572 VVAADDGIRPQTN--EAIAHAKA--AGVPIVIAINKIDKDGA-------------NPERVMQELSSIGLMPEDWGGDIPM 634 (1018)
Q Consensus 572 VVDAddGv~~QT~--E~I~~ak~--~gIPIIVVINKiDL~~a-------------~~erv~~eL~e~gl~~e~~g~~vpi 634 (1018)
|+|+++....+.. .++..++. .++|+|+|+||+|+... ..++..+.....+ ..+|
T Consensus 79 vyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~--------~~~~ 150 (176)
T cd04133 79 AFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIG--------AAAY 150 (176)
T ss_pred EEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcC--------CCEE
Confidence 9999985544432 23444432 47899999999999542 1122222222211 1369
Q ss_pred EEEecCCCCChHHHHHHHHHH
Q 001745 635 VQISALKGEKVDDLLETIMLV 655 (1018)
Q Consensus 635 VeISAktGeGIdeLleaIl~l 655 (1018)
++|||++|.||+++|+.+...
T Consensus 151 ~E~SAk~~~nV~~~F~~~~~~ 171 (176)
T cd04133 151 IECSSKTQQNVKAVFDAAIKV 171 (176)
T ss_pred EECCCCcccCHHHHHHHHHHH
Confidence 999999999999999999864
No 107
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.80 E-value=3e-18 Score=167.79 Aligned_cols=153 Identities=20% Similarity=0.226 Sum_probs=111.8
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVIL 571 (1018)
.+|+++|++|+|||||+++|.+..+.......++ ..+....+.+++....+.||||||++.|..++...+..+|++|+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~il 78 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIG--VDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALL 78 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcee--eEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEE
Confidence 4799999999999999999998776544444333 33333344456666789999999999999999999999999999
Q ss_pred EEecCCCCChhHHH-HHHHHHH---cCCCEEEEEecCCCCCC---ChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCC
Q 001745 572 VVAADDGIRPQTNE-AIAHAKA---AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (1018)
Q Consensus 572 VVDAddGv~~QT~E-~I~~ak~---~gIPIIVVINKiDL~~a---~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGeG 644 (1018)
|+|+++....+... ++..+.. .++|+++++||+|+... +.+......... .++++++||++|.|
T Consensus 79 v~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~---------~~~~~e~Sa~~~~~ 149 (164)
T smart00175 79 VYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEH---------GLPFFETSAKTNTN 149 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHc---------CCeEEEEeCCCCCC
Confidence 99998743333222 2222222 46899999999998542 233333333222 25699999999999
Q ss_pred hHHHHHHHHHH
Q 001745 645 VDDLLETIMLV 655 (1018)
Q Consensus 645 IdeLleaIl~l 655 (1018)
+++++++|...
T Consensus 150 i~~l~~~i~~~ 160 (164)
T smart00175 150 VEEAFEELARE 160 (164)
T ss_pred HHHHHHHHHHH
Confidence 99999999754
No 108
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.79 E-value=1.4e-18 Score=173.02 Aligned_cols=151 Identities=24% Similarity=0.292 Sum_probs=106.7
Q ss_pred EEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEEEE
Q 001745 494 LTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVV 573 (1018)
Q Consensus 494 VaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVILVV 573 (1018)
|+|+|++++|||||+++|....+.....+.+. ..+...+.+++..+.+.||||||++.|..++...+..+|++|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 77 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVF---ENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICF 77 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEE---eeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEE
Confidence 58999999999999999998777544333222 122333445677778999999999999999999999999999999
Q ss_pred ecCCCCChhHH--HHHHHHHH--cCCCEEEEEecCCCCCCC---------------hHHHHHHHHhcCCCCCCCCCCCcE
Q 001745 574 AADDGIRPQTN--EAIAHAKA--AGVPIVIAINKIDKDGAN---------------PERVMQELSSIGLMPEDWGGDIPM 634 (1018)
Q Consensus 574 DAddGv~~QT~--E~I~~ak~--~gIPIIVVINKiDL~~a~---------------~erv~~eL~e~gl~~e~~g~~vpi 634 (1018)
|+++....+.. .++..+.. .++|+|+|+||+|+.... .++........ +..++
T Consensus 78 d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~~~~~ 149 (174)
T smart00174 78 SVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRI--------GAVKY 149 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHc--------CCcEE
Confidence 99874222221 12223322 479999999999995411 11111111111 12479
Q ss_pred EEEecCCCCChHHHHHHHHHH
Q 001745 635 VQISALKGEKVDDLLETIMLV 655 (1018)
Q Consensus 635 VeISAktGeGIdeLleaIl~l 655 (1018)
++|||++|.||+++|+.|...
T Consensus 150 ~e~Sa~~~~~v~~lf~~l~~~ 170 (174)
T smart00174 150 LECSALTQEGVREVFEEAIRA 170 (174)
T ss_pred EEecCCCCCCHHHHHHHHHHH
Confidence 999999999999999998754
No 109
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.79 E-value=1e-18 Score=172.32 Aligned_cols=150 Identities=23% Similarity=0.240 Sum_probs=105.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEEE
Q 001745 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIV 572 (1018)
Q Consensus 493 kVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVILV 572 (1018)
+|+++|++++|||||+++|....+.. . ..|.+.....+. +....+.||||||++.|..++..++..+|++|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~--~~t~~~~~~~~~----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v 73 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-T--IPTIGFNVETVT----YKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYV 73 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-c--CCccCcCeEEEE----ECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEE
Confidence 48999999999999999997665532 2 224343333332 2456899999999999999999999999999999
Q ss_pred EecCCCCChh-HHHHHH-HHH---HcCCCEEEEEecCCCCCCC-hHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCChH
Q 001745 573 VAADDGIRPQ-TNEAIA-HAK---AAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVD 646 (1018)
Q Consensus 573 VDAddGv~~Q-T~E~I~-~ak---~~gIPIIVVINKiDL~~a~-~erv~~eL~e~gl~~e~~g~~vpiVeISAktGeGId 646 (1018)
+|+++....+ ..+.+. .++ ..++|+++++||+|+.... ..++...+....+ .....+++++||++|.|++
T Consensus 74 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~----~~~~~~~~~~Sa~~~~gi~ 149 (158)
T cd04151 74 VDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSEL----KDRTWSIFKTSAIKGEGLD 149 (158)
T ss_pred EECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCcccc----CCCcEEEEEeeccCCCCHH
Confidence 9998742211 122222 222 2478999999999996543 3333332211111 0123579999999999999
Q ss_pred HHHHHHH
Q 001745 647 DLLETIM 653 (1018)
Q Consensus 647 eLleaIl 653 (1018)
+++++|.
T Consensus 150 ~l~~~l~ 156 (158)
T cd04151 150 EGMDWLV 156 (158)
T ss_pred HHHHHHh
Confidence 9999985
No 110
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.79 E-value=1.3e-18 Score=171.59 Aligned_cols=152 Identities=20% Similarity=0.272 Sum_probs=108.7
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVIL 571 (1018)
.+|+++|.+|+|||||++++....+.....+ +.. ..+...+.+++....+.||||||++.|..++..++..+|++|+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~-t~~--~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~ 78 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDP-TIE--DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIV 78 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCC-chh--heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEE
Confidence 5799999999999999999998776543322 222 2334445556767789999999999999999999999999999
Q ss_pred EEecCCCCChh-HHHHHHHHHH----cCCCEEEEEecCCCCCCCh--HHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCC
Q 001745 572 VVAADDGIRPQ-TNEAIAHAKA----AGVPIVIAINKIDKDGANP--ERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (1018)
Q Consensus 572 VVDAddGv~~Q-T~E~I~~ak~----~gIPIIVVINKiDL~~a~~--erv~~eL~e~gl~~e~~g~~vpiVeISAktGeG 644 (1018)
|+|+++....+ ..+++..+.. .++|+++|+||+|+..... ......+.. .+ .++++++||++|.|
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~~~~ 150 (163)
T cd04176 79 VYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAE------EW--GCPFMETSAKSKTM 150 (163)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHH------Hh--CCEEEEecCCCCCC
Confidence 99998843222 1222222222 4789999999999853211 111122221 11 25799999999999
Q ss_pred hHHHHHHHHH
Q 001745 645 VDDLLETIML 654 (1018)
Q Consensus 645 IdeLleaIl~ 654 (1018)
++++|++|..
T Consensus 151 v~~l~~~l~~ 160 (163)
T cd04176 151 VNELFAEIVR 160 (163)
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 111
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.79 E-value=1.3e-18 Score=175.25 Aligned_cols=153 Identities=17% Similarity=0.170 Sum_probs=107.2
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEE
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiV 569 (1018)
+.++|+++|++++|||||+++|....+.. .. .|.++....+. .....+.||||||++.|..++..++..+|++
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~--~t~g~~~~~~~----~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~i 80 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TI--PTVGFNVETVT----YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGL 80 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCcc-cc--CCcccceEEEE----ECCEEEEEEECCCCHHHHHHHHHHhccCCEE
Confidence 45789999999999999999998655432 22 23333333222 2457899999999999999999999999999
Q ss_pred EEEEecCCCCC-hhHHHHHH-HHH---HcCCCEEEEEecCCCCCC-ChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCC
Q 001745 570 VIVVAADDGIR-PQTNEAIA-HAK---AAGVPIVIAINKIDKDGA-NPERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (1018)
Q Consensus 570 ILVVDAddGv~-~QT~E~I~-~ak---~~gIPIIVVINKiDL~~a-~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGe 643 (1018)
|+|+|+++... ....+.+. .+. ..++|+++++||+|+... ..+++...+....+ ....++++++||++|.
T Consensus 81 i~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~----~~~~~~~~~~SAk~g~ 156 (168)
T cd04149 81 IFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRI----RDRNWYVQPSCATSGD 156 (168)
T ss_pred EEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCcc----CCCcEEEEEeeCCCCC
Confidence 99999997422 22222222 222 246899999999999643 33443333221111 1123578999999999
Q ss_pred ChHHHHHHHH
Q 001745 644 KVDDLLETIM 653 (1018)
Q Consensus 644 GIdeLleaIl 653 (1018)
|++++|++|.
T Consensus 157 gv~~~~~~l~ 166 (168)
T cd04149 157 GLYEGLTWLS 166 (168)
T ss_pred ChHHHHHHHh
Confidence 9999999985
No 112
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.79 E-value=2.7e-18 Score=172.13 Aligned_cols=153 Identities=20% Similarity=0.206 Sum_probs=109.0
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecC----------CceecEEEEeCCCccchHHHHH
Q 001745 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVD----------GKLQPCVFLDTPGHEAFGAMRA 560 (1018)
Q Consensus 491 ~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~d----------gk~~~ItfIDTPGHE~F~~~r~ 560 (1018)
..+|+++|.+|+|||||+++|....+.....+ |....+....+.+. +....+.||||||++.|..++.
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFIT--TVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccCCC--ccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 36899999999999999999998776544333 33333333222222 3457899999999999999999
Q ss_pred hhhccCCEEEEEEecCCCCChhHH-HHHHHHHH----cCCCEEEEEecCCCCCC---ChHHHHHHHHhcCCCCCCCCCCC
Q 001745 561 RGARVTDIAVIVVAADDGIRPQTN-EAIAHAKA----AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDI 632 (1018)
Q Consensus 561 rg~~~ADiVILVVDAddGv~~QT~-E~I~~ak~----~gIPIIVVINKiDL~~a---~~erv~~eL~e~gl~~e~~g~~v 632 (1018)
.+++.+|++|+|+|+++....+.. .++..+.. .+.|+++|+||+|+... ..++........ .+
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~---------~~ 152 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKY---------GI 152 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHc---------CC
Confidence 999999999999999873322222 22222222 36789999999999542 223332222222 25
Q ss_pred cEEEEecCCCCChHHHHHHHHH
Q 001745 633 PMVQISALKGEKVDDLLETIML 654 (1018)
Q Consensus 633 piVeISAktGeGIdeLleaIl~ 654 (1018)
+++++||++|.|++++|++|..
T Consensus 153 ~~~e~Sak~~~~v~~l~~~l~~ 174 (180)
T cd04127 153 PYFETSAATGTNVEKAVERLLD 174 (180)
T ss_pred eEEEEeCCCCCCHHHHHHHHHH
Confidence 7999999999999999999974
No 113
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.79 E-value=2.5e-18 Score=176.05 Aligned_cols=156 Identities=21% Similarity=0.210 Sum_probs=111.1
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVIL 571 (1018)
.+|+++|.+|+|||||+++|....+...... .|....+....+.+++....++||||||++.|..++..+++.+|++|+
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~ 79 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFI-ATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLL 79 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcC-CcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEE
Confidence 3799999999999999999998776543222 233333333334456677889999999999999999999999999999
Q ss_pred EEecCCCCChhH-HHHHHHHH---HcCCCEEEEEecCCCCCC---ChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCC
Q 001745 572 VVAADDGIRPQT-NEAIAHAK---AAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (1018)
Q Consensus 572 VVDAddGv~~QT-~E~I~~ak---~~gIPIIVVINKiDL~~a---~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGeG 644 (1018)
|+|+++....+. ..++..+. ..++|+++|+||+|+... ..++........ .++++++||++|.|
T Consensus 80 v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~---------~~~~~e~Sa~~~~~ 150 (191)
T cd04112 80 LYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEY---------GVPFMETSAKTGLN 150 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHc---------CCeEEEEeCCCCCC
Confidence 999987432221 22222332 236899999999999532 122222222121 25799999999999
Q ss_pred hHHHHHHHHHHHH
Q 001745 645 VDDLLETIMLVAE 657 (1018)
Q Consensus 645 IdeLleaIl~lae 657 (1018)
+++||++|.....
T Consensus 151 v~~l~~~l~~~~~ 163 (191)
T cd04112 151 VELAFTAVAKELK 163 (191)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999986553
No 114
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.79 E-value=2.8e-18 Score=175.66 Aligned_cols=152 Identities=24% Similarity=0.232 Sum_probs=107.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEEE
Q 001745 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIV 572 (1018)
Q Consensus 493 kVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVILV 572 (1018)
+|+|+|.+|+|||||+++|....+.....+ |... .+.....+++..+.++||||||++.|..++..+++.+|++|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~--t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv 77 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDP--TIED-SYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILV 77 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCC--chHh-hEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEE
Confidence 489999999999999999998776543322 2221 1222334566667899999999999999999999999999999
Q ss_pred EecCCCCChhH-HHHHHHHHH------cCCCEEEEEecCCCCCCC---hHHHHHHHHhcCCCCCCCCCCCcEEEEecCCC
Q 001745 573 VAADDGIRPQT-NEAIAHAKA------AGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (1018)
Q Consensus 573 VDAddGv~~QT-~E~I~~ak~------~gIPIIVVINKiDL~~a~---~erv~~eL~e~gl~~e~~g~~vpiVeISAktG 642 (1018)
||+++...... ..++..+.. .++|+|+|+||+|+.... ........... .++++++||++|
T Consensus 78 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~e~SAk~~ 148 (190)
T cd04144 78 YSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRL---------GCEFIEASAKTN 148 (190)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHh---------CCEEEEecCCCC
Confidence 99987433222 222222221 468999999999995321 12221111111 257999999999
Q ss_pred CChHHHHHHHHHHH
Q 001745 643 EKVDDLLETIMLVA 656 (1018)
Q Consensus 643 eGIdeLleaIl~la 656 (1018)
.||+++|++|....
T Consensus 149 ~~v~~l~~~l~~~l 162 (190)
T cd04144 149 VNVERAFYTLVRAL 162 (190)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998543
No 115
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.79 E-value=2.6e-18 Score=169.72 Aligned_cols=152 Identities=18% Similarity=0.246 Sum_probs=110.7
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVIL 571 (1018)
.+|+++|.+++|||||+++|....+.....+.++ ..+....+..++....+.||||||++.|..++..+++.+|++|+
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIG--VEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccc--eEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 5899999999999999999998776654444444 33344444456666789999999999999999999999999999
Q ss_pred EEecCCCCChhHH-HHHHHHHH---cCCCEEEEEecCCCCCCC---hHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCC
Q 001745 572 VVAADDGIRPQTN-EAIAHAKA---AGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (1018)
Q Consensus 572 VVDAddGv~~QT~-E~I~~ak~---~gIPIIVVINKiDL~~a~---~erv~~eL~e~gl~~e~~g~~vpiVeISAktGeG 644 (1018)
|+|+++....+.. +++..+.. .++|+++|+||+|+.... .++........ .++++++||++|.|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~~ 152 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKN---------GLSFIETSALDGTN 152 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHc---------CCEEEEEECCCCCC
Confidence 9999863322221 22222222 358999999999985421 22222222211 36799999999999
Q ss_pred hHHHHHHHHH
Q 001745 645 VDDLLETIML 654 (1018)
Q Consensus 645 IdeLleaIl~ 654 (1018)
+++++++|..
T Consensus 153 v~~l~~~l~~ 162 (165)
T cd01868 153 VEEAFKQLLT 162 (165)
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 116
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.79 E-value=2.1e-18 Score=171.84 Aligned_cols=151 Identities=19% Similarity=0.189 Sum_probs=105.0
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVIL 571 (1018)
.+|+++|+.++|||||+++|....+.. . ..|.+.....+. .....+.||||||++.|..++..+++.+|++||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~-~--~pt~g~~~~~~~----~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~ 73 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVT-T--IPTIGFNVETVE----YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 73 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcc-c--CCCCCcceEEEE----ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 379999999999999999997665542 2 234443333222 245789999999999999999999999999999
Q ss_pred EEecCCCCC-hhHHHHHHHH----HHcCCCEEEEEecCCCCCCC-hHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCCh
Q 001745 572 VVAADDGIR-PQTNEAIAHA----KAAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISALKGEKV 645 (1018)
Q Consensus 572 VVDAddGv~-~QT~E~I~~a----k~~gIPIIVVINKiDL~~a~-~erv~~eL~e~gl~~e~~g~~vpiVeISAktGeGI 645 (1018)
|+|+++... .+..+.+..+ ...+.|+++++||+|+.... ..++...+....+ ....+.++++||++|.||
T Consensus 74 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~----~~~~~~~~~~Sak~g~gv 149 (159)
T cd04150 74 VVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSL----RNRNWYIQATCATSGDGL 149 (159)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccc----CCCCEEEEEeeCCCCCCH
Confidence 999987321 1222222222 12358999999999996532 2333333311111 112356889999999999
Q ss_pred HHHHHHHH
Q 001745 646 DDLLETIM 653 (1018)
Q Consensus 646 deLleaIl 653 (1018)
+++|++|.
T Consensus 150 ~~~~~~l~ 157 (159)
T cd04150 150 YEGLDWLS 157 (159)
T ss_pred HHHHHHHh
Confidence 99999985
No 117
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.79 E-value=3.6e-18 Score=172.87 Aligned_cols=156 Identities=21% Similarity=0.236 Sum_probs=110.3
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecC-CceecEEEEeCCCccchHHHHHhhhccCCEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVD-GKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~d-gk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVI 570 (1018)
.+|+|+|.+|+|||||+++|....+.....+ |....+.. .+... +..+.+.||||||++.|..++..++..+|++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~--t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 77 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVP--TVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLL 77 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCC--eeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEE
Confidence 3799999999999999999998877544333 32222222 22233 56678999999999999999999999999999
Q ss_pred EEEecCCCCChhHHH--HHHHHH--HcCCCEEEEEecCCCCCCC-------hHHHHHHHHhcCCCCCCCCCCCcEEEEec
Q 001745 571 IVVAADDGIRPQTNE--AIAHAK--AAGVPIVIAINKIDKDGAN-------PERVMQELSSIGLMPEDWGGDIPMVQISA 639 (1018)
Q Consensus 571 LVVDAddGv~~QT~E--~I~~ak--~~gIPIIVVINKiDL~~a~-------~erv~~eL~e~gl~~e~~g~~vpiVeISA 639 (1018)
+|+|+++....+... ++.... ..++|+|+|+||+|+.... .++..+.....+. .+++++||
T Consensus 78 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~--------~~~~e~Sa 149 (187)
T cd04132 78 ICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGA--------FAYLECSA 149 (187)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCC--------cEEEEccC
Confidence 999999744333221 222222 2478999999999995422 2222222222221 27999999
Q ss_pred CCCCChHHHHHHHHHHHHH
Q 001745 640 LKGEKVDDLLETIMLVAEL 658 (1018)
Q Consensus 640 ktGeGIdeLleaIl~lael 658 (1018)
++|.||+++|+.+...+..
T Consensus 150 ~~~~~v~~~f~~l~~~~~~ 168 (187)
T cd04132 150 KTMENVEEVFDTAIEEALK 168 (187)
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999866543
No 118
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.79 E-value=2.5e-18 Score=176.68 Aligned_cols=155 Identities=17% Similarity=0.179 Sum_probs=112.8
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEE
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiV 569 (1018)
...+|+++|+.++|||||+.+|....+..... .|... .+...+.+++....+.||||+|++.|..++..+++.+|++
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~--pT~~~-~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ 80 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYV--PTVFE-NYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 80 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccC--Cceee-eeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence 34689999999999999999999877654332 23332 2334455677888999999999999999999999999999
Q ss_pred EEEEecCCCCChhHH--HHHHHHHH--cCCCEEEEEecCCCCCC---------------ChHHHHHHHHhcCCCCCCCCC
Q 001745 570 VIVVAADDGIRPQTN--EAIAHAKA--AGVPIVIAINKIDKDGA---------------NPERVMQELSSIGLMPEDWGG 630 (1018)
Q Consensus 570 ILVVDAddGv~~QT~--E~I~~ak~--~gIPIIVVINKiDL~~a---------------~~erv~~eL~e~gl~~e~~g~ 630 (1018)
|||+|+++....+.. .++..++. .+.|+|+|+||+|+... ..++..+...+++
T Consensus 81 ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~-------- 152 (182)
T cd04172 81 LICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIG-------- 152 (182)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcC--------
Confidence 999999985433332 22233322 36899999999998531 1122222222222
Q ss_pred CCcEEEEecCCCCC-hHHHHHHHHHH
Q 001745 631 DIPMVQISALKGEK-VDDLLETIMLV 655 (1018)
Q Consensus 631 ~vpiVeISAktGeG-IdeLleaIl~l 655 (1018)
.++|++|||++|.| |+++|+.+.+.
T Consensus 153 ~~~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 153 AATYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred CCEEEECCcCCCCCCHHHHHHHHHHH
Confidence 14799999999998 99999988763
No 119
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.79 E-value=3e-18 Score=177.38 Aligned_cols=156 Identities=15% Similarity=0.181 Sum_probs=114.9
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEE
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiV 569 (1018)
...+|+++|..++|||||+.+|....+.....+ |....++...+.+++..+.+.||||+|++.|..++..+++.+|++
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~--t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i 82 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGY--NMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI 82 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCC--cceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 457899999999999999999998766543333 333344444455677778999999999999999999999999999
Q ss_pred EEEEecCCCCChhHH-HHHHHHHH--cCCCEEEEEecCCCCCC---ChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCC
Q 001745 570 VIVVAADDGIRPQTN-EAIAHAKA--AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (1018)
Q Consensus 570 ILVVDAddGv~~QT~-E~I~~ak~--~gIPIIVVINKiDL~~a---~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGe 643 (1018)
|||||+++....+.. .++..+.. .++|+||++||+|+... ..++........ .++|+++||++|.
T Consensus 83 llVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~---------~~~~~e~SAk~g~ 153 (189)
T cd04121 83 ILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERN---------GMTFFEVSPLCNF 153 (189)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHc---------CCEEEEecCCCCC
Confidence 999999984332222 22222322 47899999999999542 223333222222 2579999999999
Q ss_pred ChHHHHHHHHHHH
Q 001745 644 KVDDLLETIMLVA 656 (1018)
Q Consensus 644 GIdeLleaIl~la 656 (1018)
||+++|++|....
T Consensus 154 ~V~~~F~~l~~~i 166 (189)
T cd04121 154 NITESFTELARIV 166 (189)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998543
No 120
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.79 E-value=1.7e-18 Score=175.57 Aligned_cols=160 Identities=23% Similarity=0.223 Sum_probs=112.4
Q ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCC
Q 001745 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTD 567 (1018)
Q Consensus 488 ~~r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~AD 567 (1018)
..+..+|+++|+.|+|||||+++|....+.. ...|.+.....+. ++ +..+.+|||||++.|..++..++..+|
T Consensus 16 ~~~~~ki~ilG~~~~GKStLi~~l~~~~~~~---~~~T~~~~~~~i~--~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad 88 (190)
T cd00879 16 YNKEAKILFLGLDNAGKTTLLHMLKDDRLAQ---HVPTLHPTSEELT--IG--NIKFKTFDLGGHEQARRLWKDYFPEVD 88 (190)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcCCCcc---cCCccCcceEEEE--EC--CEEEEEEECCCCHHHHHHHHHHhccCC
Confidence 4567899999999999999999998766531 2234444333333 23 367999999999999998888999999
Q ss_pred EEEEEEecCCCCC-hhHHHHHHHH----HHcCCCEEEEEecCCCCCC-ChHHHHHHHHhcCCCC-------CCCCCCCcE
Q 001745 568 IAVIVVAADDGIR-PQTNEAIAHA----KAAGVPIVIAINKIDKDGA-NPERVMQELSSIGLMP-------EDWGGDIPM 634 (1018)
Q Consensus 568 iVILVVDAddGv~-~QT~E~I~~a----k~~gIPIIVVINKiDL~~a-~~erv~~eL~e~gl~~-------e~~g~~vpi 634 (1018)
++++|+|+++... ....+.+..+ ...+.|+++++||+|+... ..+++.+.+....... +.....+++
T Consensus 89 ~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (190)
T cd00879 89 GIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEV 168 (190)
T ss_pred EEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEE
Confidence 9999999987421 1122222222 2356899999999999643 4444444443322211 122234679
Q ss_pred EEEecCCCCChHHHHHHHHH
Q 001745 635 VQISALKGEKVDDLLETIML 654 (1018)
Q Consensus 635 VeISAktGeGIdeLleaIl~ 654 (1018)
++|||++|+|++++|++|..
T Consensus 169 ~~~Sa~~~~gv~e~~~~l~~ 188 (190)
T cd00879 169 FMCSVVKRQGYGEAFRWLSQ 188 (190)
T ss_pred EEeEecCCCChHHHHHHHHh
Confidence 99999999999999999964
No 121
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.79 E-value=1.9e-18 Score=176.99 Aligned_cols=162 Identities=23% Similarity=0.254 Sum_probs=110.8
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVIL 571 (1018)
.+|+|+|..|+|||||+++|....+.....+ |.... +...+..++....+.||||||++.|..++..++..+|++||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~--t~~~~-~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~il 77 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEP--TVFEN-YVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIML 77 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCC--cceee-eEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEE
Confidence 3799999999999999999998777543332 32222 22233346667889999999999999999999999999999
Q ss_pred EEecCCCCChhHHH--HHHHHHH--cCCCEEEEEecCCCCCCChHH-HHHHHH------hcCCCCCCCCCCCcEEEEecC
Q 001745 572 VVAADDGIRPQTNE--AIAHAKA--AGVPIVIAINKIDKDGANPER-VMQELS------SIGLMPEDWGGDIPMVQISAL 640 (1018)
Q Consensus 572 VVDAddGv~~QT~E--~I~~ak~--~gIPIIVVINKiDL~~a~~er-v~~eL~------e~gl~~e~~g~~vpiVeISAk 640 (1018)
|+|+++....+..+ ++..+.. .++|+|+|+||+|+....... ....+. +.+.......+.++|+++||+
T Consensus 78 v~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk 157 (189)
T cd04134 78 CFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAK 157 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCC
Confidence 99999854443332 3333332 378999999999996432211 100000 000000001123679999999
Q ss_pred CCCChHHHHHHHHHHH
Q 001745 641 KGEKVDDLLETIMLVA 656 (1018)
Q Consensus 641 tGeGIdeLleaIl~la 656 (1018)
+|.||+++|++|....
T Consensus 158 ~~~~v~e~f~~l~~~~ 173 (189)
T cd04134 158 LNRGVNEAFTEAARVA 173 (189)
T ss_pred cCCCHHHHHHHHHHHH
Confidence 9999999999998654
No 122
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.79 E-value=1.4e-18 Score=170.43 Aligned_cols=153 Identities=24% Similarity=0.301 Sum_probs=106.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEEE
Q 001745 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIV 572 (1018)
Q Consensus 493 kVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVILV 572 (1018)
+|+++|.+|+|||||+++|....+... ..|.+.....+.. ...+.+.||||||++.|..++..++..+|++|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~---~~t~~~~~~~~~~---~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v 74 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT---IPTVGFNVEMLQL---EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYV 74 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc---cCccCcceEEEEe---CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 489999999999999999998766422 2344443333332 2456899999999999999999999999999999
Q ss_pred EecCCCCC-hhHHHHHHH----HHHcCCCEEEEEecCCCCCC-ChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCChH
Q 001745 573 VAADDGIR-PQTNEAIAH----AKAAGVPIVIAINKIDKDGA-NPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVD 646 (1018)
Q Consensus 573 VDAddGv~-~QT~E~I~~----ak~~gIPIIVVINKiDL~~a-~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGeGId 646 (1018)
+|+++... ......+.. ....++|+++++||+|+... ...++...+....+. ....++++++||++|+||+
T Consensus 75 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~Sa~~~~gv~ 151 (160)
T cd04156 75 VDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYC---SDRDWYVQPCSAVTGEGLA 151 (160)
T ss_pred EECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccC---CCCcEEEEecccccCCChH
Confidence 99987431 111122222 12257999999999999643 233333222211111 1124579999999999999
Q ss_pred HHHHHHHH
Q 001745 647 DLLETIML 654 (1018)
Q Consensus 647 eLleaIl~ 654 (1018)
++|++|..
T Consensus 152 ~~~~~i~~ 159 (160)
T cd04156 152 EAFRKLAS 159 (160)
T ss_pred HHHHHHhc
Confidence 99999853
No 123
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.79 E-value=3.5e-18 Score=167.82 Aligned_cols=153 Identities=20% Similarity=0.251 Sum_probs=111.4
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVIL 571 (1018)
.+|+++|++++|||||+++|.+..+..... .|.+..+....+.+++....+.+|||||++.|..++..+++.+|++||
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 79 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQE--STIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIV 79 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCC--CccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEE
Confidence 579999999999999999999887654222 233333334444556777889999999999999999889999999999
Q ss_pred EEecCCCCC-hhHHHHHHHHHH---cCCCEEEEEecCCCCCC---ChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCC
Q 001745 572 VVAADDGIR-PQTNEAIAHAKA---AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (1018)
Q Consensus 572 VVDAddGv~-~QT~E~I~~ak~---~gIPIIVVINKiDL~~a---~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGeG 644 (1018)
|+|+++... .+...++..+.. .++|+++++||+|+... +.+.........+ ++++++||++|.|
T Consensus 80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa~~~~~ 150 (163)
T cd01860 80 VYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENG---------LLFFETSAKTGEN 150 (163)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcC---------CEEEEEECCCCCC
Confidence 999986321 122233333333 35789999999998632 2333333333322 5799999999999
Q ss_pred hHHHHHHHHHH
Q 001745 645 VDDLLETIMLV 655 (1018)
Q Consensus 645 IdeLleaIl~l 655 (1018)
+.+++++|...
T Consensus 151 v~~l~~~l~~~ 161 (163)
T cd01860 151 VNELFTEIAKK 161 (163)
T ss_pred HHHHHHHHHHH
Confidence 99999998754
No 124
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.79 E-value=3.1e-18 Score=173.60 Aligned_cols=157 Identities=20% Similarity=0.259 Sum_probs=108.9
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVIL 571 (1018)
.+|+++|..++|||||+.++....+.....+ |.. ..+...+.+++....+.||||||++.|..++..++..+|++||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~--t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 78 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIP--TVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLI 78 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCC--cce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEE
Confidence 5799999999999999999998776543332 322 2333344557777889999999999999999999999999999
Q ss_pred EEecCCCCChhHH--HHHHHHHH--cCCCEEEEEecCCCCCCChHHHHHHHHhcC---C-------CCCCCCCCCcEEEE
Q 001745 572 VVAADDGIRPQTN--EAIAHAKA--AGVPIVIAINKIDKDGANPERVMQELSSIG---L-------MPEDWGGDIPMVQI 637 (1018)
Q Consensus 572 VVDAddGv~~QT~--E~I~~ak~--~gIPIIVVINKiDL~~a~~erv~~eL~e~g---l-------~~e~~g~~vpiVeI 637 (1018)
|||+++....+.. .++..+.. .++|+|+|+||+|+..... .. ..+.... + ....+ +.+++++|
T Consensus 79 v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~-~~-~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~e~ 155 (174)
T cd01871 79 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD-TI-EKLKEKKLTPITYPQGLAMAKEI-GAVKYLEC 155 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChh-hH-HHHhhccCCCCCHHHHHHHHHHc-CCcEEEEe
Confidence 9999984433332 12232222 3689999999999953211 00 0010000 0 00011 13589999
Q ss_pred ecCCCCChHHHHHHHHH
Q 001745 638 SALKGEKVDDLLETIML 654 (1018)
Q Consensus 638 SAktGeGIdeLleaIl~ 654 (1018)
||++|.||+++|+.+..
T Consensus 156 Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 156 SALTQKGLKTVFDEAIR 172 (174)
T ss_pred cccccCCHHHHHHHHHH
Confidence 99999999999998864
No 125
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.79 E-value=5.5e-18 Score=166.89 Aligned_cols=154 Identities=16% Similarity=0.224 Sum_probs=107.4
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcC--cccccccCCceeeeeeEEEEEec-CCceecEEEEeCCCccchHHHHHhhhccCCE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKT--KVAAAEAGGITQGIGAYKVQVPV-DGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~--~v~~~e~gGiTqdIga~~V~i~~-dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADi 568 (1018)
.+|+++|.+++|||||+++|... .+... ...|.+..++...+.+ .+....+.+|||||++.|..++...+..+|+
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 78 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKN--YLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSV 78 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcc--CCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCE
Confidence 37999999999999999999864 33322 2334444443333333 3566889999999999999999999999999
Q ss_pred EEEEEecCCCCChhH-HHHHHHHHH--cCCCEEEEEecCCCCCCC-hHH-HHHHHHhcCCCCCCCCCCCcEEEEecCCCC
Q 001745 569 AVIVVAADDGIRPQT-NEAIAHAKA--AGVPIVIAINKIDKDGAN-PER-VMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (1018)
Q Consensus 569 VILVVDAddGv~~QT-~E~I~~ak~--~gIPIIVVINKiDL~~a~-~er-v~~eL~e~gl~~e~~g~~vpiVeISAktGe 643 (1018)
+++|+|+++...... ..++..+.. .++|+|+|+||+|+.... ... ....+... + .++++++||++|.
T Consensus 79 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~------~--~~~~~~~Sa~~~~ 150 (164)
T cd04101 79 FILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQA------N--QLKFFKTSALRGV 150 (164)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHH------c--CCeEEEEeCCCCC
Confidence 999999987432221 222233332 368999999999995431 111 11122211 1 2579999999999
Q ss_pred ChHHHHHHHHHH
Q 001745 644 KVDDLLETIMLV 655 (1018)
Q Consensus 644 GIdeLleaIl~l 655 (1018)
|++++|+.|...
T Consensus 151 gi~~l~~~l~~~ 162 (164)
T cd04101 151 GYEEPFESLARA 162 (164)
T ss_pred ChHHHHHHHHHH
Confidence 999999998754
No 126
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.79 E-value=2.4e-18 Score=171.34 Aligned_cols=152 Identities=23% Similarity=0.263 Sum_probs=108.3
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVIL 571 (1018)
.+|+++|++++|||||+++|.+..+.....+.+ . ..+...+.+++..+.+.||||||++.|..++...+..+|++|+
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~-~--~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~il 77 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-F--DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLI 77 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-e--eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEE
Confidence 379999999999999999999877653332221 1 2333344456667789999999999999999999999999999
Q ss_pred EEecCCCCChhHH--HHHHHHH--HcCCCEEEEEecCCCCCCChH---------------HHHHHHHhcCCCCCCCCCCC
Q 001745 572 VVAADDGIRPQTN--EAIAHAK--AAGVPIVIAINKIDKDGANPE---------------RVMQELSSIGLMPEDWGGDI 632 (1018)
Q Consensus 572 VVDAddGv~~QT~--E~I~~ak--~~gIPIIVVINKiDL~~a~~e---------------rv~~eL~e~gl~~e~~g~~v 632 (1018)
|+|+++....+.. .++..+. ..++|+++++||+|+...... +........ +..
T Consensus 78 v~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~~~ 149 (174)
T cd04135 78 CFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEI--------GAH 149 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHc--------CCC
Confidence 9999885433222 1222222 357899999999998543211 111111111 224
Q ss_pred cEEEEecCCCCChHHHHHHHHH
Q 001745 633 PMVQISALKGEKVDDLLETIML 654 (1018)
Q Consensus 633 piVeISAktGeGIdeLleaIl~ 654 (1018)
++++|||++|.||+++|+.+..
T Consensus 150 ~~~e~Sa~~~~gi~~~f~~~~~ 171 (174)
T cd04135 150 CYVECSALTQKGLKTVFDEAIL 171 (174)
T ss_pred EEEEecCCcCCCHHHHHHHHHH
Confidence 7999999999999999999874
No 127
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.79 E-value=2.9e-18 Score=173.04 Aligned_cols=154 Identities=20% Similarity=0.244 Sum_probs=110.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEEE
Q 001745 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIV 572 (1018)
Q Consensus 493 kVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVILV 572 (1018)
+|+++|+.++|||||++++....+...+.+ |....++...+.+.+....+.||||||++.|..++..+++.+|++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~--t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv 79 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKA--TIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIV 79 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCC--ceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEE
Confidence 689999999999999999998877544433 444444444445567778899999999999999999999999999999
Q ss_pred EecCCCCChh-HHHHHHHHHHc----CCCEEEEEecCCCCCCCh----HHHHHHHHhcCCCCCCCCCCCcEEEEecCCCC
Q 001745 573 VAADDGIRPQ-TNEAIAHAKAA----GVPIVIAINKIDKDGANP----ERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (1018)
Q Consensus 573 VDAddGv~~Q-T~E~I~~ak~~----gIPIIVVINKiDL~~a~~----erv~~eL~e~gl~~e~~g~~vpiVeISAktGe 643 (1018)
+|+++....+ ..+++..+... ..|+|+|+||+|+..... ++....+.. .+ ..+++++||++|.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~-~~-------~~~~~e~Sa~~g~ 151 (170)
T cd04108 80 FDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAA-EM-------QAEYWSVSALSGE 151 (170)
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHH-Hc-------CCeEEEEECCCCC
Confidence 9998732222 12233333222 356999999999854321 111112211 11 2578999999999
Q ss_pred ChHHHHHHHHHHH
Q 001745 644 KVDDLLETIMLVA 656 (1018)
Q Consensus 644 GIdeLleaIl~la 656 (1018)
|++++|+.|..++
T Consensus 152 ~v~~lf~~l~~~~ 164 (170)
T cd04108 152 NVREFFFRVAALT 164 (170)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999997654
No 128
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.78 E-value=6.8e-19 Score=200.86 Aligned_cols=223 Identities=22% Similarity=0.266 Sum_probs=160.0
Q ss_pred CccHHHHHHHhCCCHHHHHHHHHhCCCcccccccCCHHHHHHHHHhcCCceeecChhhhHHhhhh-cccCChhhhhccCC
Q 001745 411 GMLIEELARNLAIGEGEILGSLYSKGIKPEGVQTLDKDMVKMICKDYEVEVLDADPVKMEEMARK-KDLFDEEDLDKLED 489 (1018)
Q Consensus 411 ~itv~eLa~~l~~~~~~iik~L~~~G~~~~in~~Ld~e~~~lla~E~g~~v~~~~~~~~e~l~~~-~~~~~ee~~~~l~~ 489 (1018)
.+++++|.+.++..+..+.+.|+.. .+.+...|||+.- .+ .....+.-......+... ..++...+..++..
T Consensus 143 r~A~~~l~G~ls~~i~~lr~~li~~--~a~vEa~IDfpee-di----~~~~~~~i~~~l~~~~~~l~~ll~~~~~g~ilr 215 (454)
T COG0486 143 RIALRQLQGALSQLINELREALLEL--LAQVEANIDFPEE-DI----EELVLEKIREKLEELIAELDELLATAKQGKILR 215 (454)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHH--HHHheEeCCCCcc-cc----cchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 4788999999999999999999887 5566666777651 11 000000000111111111 33445566778889
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcC-cccccccCCceeeeeeEEEEEecCCceecEEEEeCCCc-------cchHHHHHh
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKT-KVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH-------EAFGAMRAR 561 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~-~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGH-------E~F~~~r~r 561 (1018)
.+.+|+|+|.||+|||||||+|.+. +..+++.+|+|+|+-...+.+ +++.+.++||+|. |+..-.+.+
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i----~G~pv~l~DTAGiRet~d~VE~iGIeRs~ 291 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINL----NGIPVRLVDTAGIRETDDVVERIGIERAK 291 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEE----CCEEEEEEecCCcccCccHHHHHHHHHHH
Confidence 9999999999999999999999965 456899999999976655554 5678999999993 334444544
Q ss_pred h-hccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHhcCCCCCCCCCCCcEEEEecC
Q 001745 562 G-ARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (1018)
Q Consensus 562 g-~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~e~~g~~vpiVeISAk 640 (1018)
. +..||++++|+|+++....+....+. +...+.|+++++||+|+......... .+....+++.+||+
T Consensus 292 ~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~~~~~-----------~~~~~~~~i~iSa~ 359 (454)
T COG0486 292 KAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKIELESE-----------KLANGDAIISISAK 359 (454)
T ss_pred HHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhcccccccchh-----------hccCCCceEEEEec
Confidence 3 48999999999999987777777766 44567899999999999653321111 12234579999999
Q ss_pred CCCChHHHHHHHHHHH
Q 001745 641 KGEKVDDLLETIMLVA 656 (1018)
Q Consensus 641 tGeGIdeLleaIl~la 656 (1018)
+|+|++.|.++|....
T Consensus 360 t~~Gl~~L~~~i~~~~ 375 (454)
T COG0486 360 TGEGLDALREAIKQLF 375 (454)
T ss_pred CccCHHHHHHHHHHHH
Confidence 9999999999997654
No 129
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.78 E-value=3.9e-18 Score=174.27 Aligned_cols=153 Identities=18% Similarity=0.183 Sum_probs=110.6
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVIL 571 (1018)
.+|+++|+.++|||||+++|....+.....+ |... .+...+.+++....+.||||+|++.|..++..+++.+|++||
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~--t~~~-~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~il 78 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVP--TVFE-NYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLI 78 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCC--ceEE-EEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEE
Confidence 4799999999999999999998877543332 3322 233445567788899999999999999999999999999999
Q ss_pred EEecCCCCChhH--HHHHHHHHH--cCCCEEEEEecCCCCCC---------------ChHHHHHHHHhcCCCCCCCCCCC
Q 001745 572 VVAADDGIRPQT--NEAIAHAKA--AGVPIVIAINKIDKDGA---------------NPERVMQELSSIGLMPEDWGGDI 632 (1018)
Q Consensus 572 VVDAddGv~~QT--~E~I~~ak~--~gIPIIVVINKiDL~~a---------------~~erv~~eL~e~gl~~e~~g~~v 632 (1018)
|+|+++....+. ..++..++. .++|+|+|+||+||... ..++..+...+++ -.
T Consensus 79 vfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~--------~~ 150 (178)
T cd04131 79 CFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLG--------AE 150 (178)
T ss_pred EEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhC--------CC
Confidence 999988544333 123333332 47899999999999531 1122221122221 13
Q ss_pred cEEEEecCCCCC-hHHHHHHHHHH
Q 001745 633 PMVQISALKGEK-VDDLLETIMLV 655 (1018)
Q Consensus 633 piVeISAktGeG-IdeLleaIl~l 655 (1018)
+|+++||++|+| |+++|..+...
T Consensus 151 ~~~E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 151 IYLECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred EEEECccCcCCcCHHHHHHHHHHH
Confidence 799999999995 99999998763
No 130
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.78 E-value=4e-18 Score=166.55 Aligned_cols=152 Identities=20% Similarity=0.263 Sum_probs=108.3
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVIL 571 (1018)
.+|+++|.+|+|||||+++|....+.... .+++.+ .+.....+++..+.+.||||||++.|..++...++.+|++++
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 77 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDY-EPTKAD--SYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLL 77 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCcccc-CCcchh--hEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEE
Confidence 47999999999999999999977665332 222222 223333456677889999999999999999999999999999
Q ss_pred EEecCCCCC----hhHHHHHHHH-HHcCCCEEEEEecCCCCCC---ChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCC
Q 001745 572 VVAADDGIR----PQTNEAIAHA-KAAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (1018)
Q Consensus 572 VVDAddGv~----~QT~E~I~~a-k~~gIPIIVVINKiDL~~a---~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGe 643 (1018)
|+|+++.-. .++...+... ...++|+++|+||+|+... ............ .++++++||++|.
T Consensus 78 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~ 148 (164)
T cd04139 78 VFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQW---------GVPYVETSAKTRQ 148 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHh---------CCeEEEeeCCCCC
Confidence 999986321 1111111111 1257999999999999651 122222222222 2579999999999
Q ss_pred ChHHHHHHHHHH
Q 001745 644 KVDDLLETIMLV 655 (1018)
Q Consensus 644 GIdeLleaIl~l 655 (1018)
|+++||++|...
T Consensus 149 gi~~l~~~l~~~ 160 (164)
T cd04139 149 NVEKAFYDLVRE 160 (164)
T ss_pred CHHHHHHHHHHH
Confidence 999999998754
No 131
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=99.78 E-value=8.6e-19 Score=163.77 Aligned_cols=94 Identities=62% Similarity=0.981 Sum_probs=90.6
Q ss_pred CcceEEEEeeecCCCcEEEEEeEeeEEecCCEEEEccceeEEEEEeccCCCcccccCCCccEEEeccCCCCCCCCeEEEe
Q 001745 669 AKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEAFGKVRALFDDSGNRVDEAGPSIPVQIIGLNGVPIAGDEFEVV 748 (1018)
Q Consensus 669 ~~g~ViEs~~dkg~G~VatglV~~GtLkvGD~Vv~G~~~gKVRaI~~~~g~~V~eA~pg~~V~V~Gl~~vP~aGd~~~vv 748 (1018)
+.|+|+|+..++++|++++++|++|+|++||+|++|..|||||+|++++|+.+++|.||++|.|.||+++|.|||.|+++
T Consensus 1 a~g~VlE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~~~gkVr~l~d~~g~~v~~a~Ps~~V~I~G~~~~P~aGd~~~~~ 80 (95)
T cd03702 1 AEGVVIESKLDKGRGPVATVLVQNGTLKVGDVLVAGTTYGKVRAMFDENGKRVKEAGPSTPVEILGLKGVPQAGDKFLVV 80 (95)
T ss_pred CeEEEEEEEecCCCCccEEEEEEcCeEeCCCEEEEcccccEEEEEECCCCCCCCEECCCCcEEEcCCCCCCCCCCEEEEe
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChHHHHHHHHHHH
Q 001745 749 DSLDVAREKAEARA 762 (1018)
Q Consensus 749 ~~e~~Ar~~a~~r~ 762 (1018)
+|++.|++++++|+
T Consensus 81 ~se~~Ak~~~~~r~ 94 (95)
T cd03702 81 ESEKEAKEIAEYRK 94 (95)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999999988763
No 132
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.78 E-value=8.5e-19 Score=178.88 Aligned_cols=159 Identities=27% Similarity=0.319 Sum_probs=126.2
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCE
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADi 568 (1018)
....+|.|+|++|||||||++++...++..... .|++..+.+..+.+++....+++|||+|+|+|.++....++.+|+
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qyk--aTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDc 84 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYK--ATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADC 84 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhc--cccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCce
Confidence 345789999999999999999999888765443 466667777777788888999999999999999999999999999
Q ss_pred EEEEEecCCCCC-----hhHHHHHHHHHH---cCCCEEEEEecCCCCCC-----ChHHHHHHHHhcCCCCCCCCCCCcEE
Q 001745 569 AVIVVAADDGIR-----PQTNEAIAHAKA---AGVPIVIAINKIDKDGA-----NPERVMQELSSIGLMPEDWGGDIPMV 635 (1018)
Q Consensus 569 VILVVDAddGv~-----~QT~E~I~~ak~---~gIPIIVVINKiDL~~a-----~~erv~~eL~e~gl~~e~~g~~vpiV 635 (1018)
++||+|+++.-. .|-.|.+.++.. ...|+||++||+|+.+. +..+..+..... +++|||
T Consensus 85 Cvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~--------gnipyf 156 (210)
T KOG0394|consen 85 CVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSK--------GNIPYF 156 (210)
T ss_pred EEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhc--------CCceeE
Confidence 999999997433 333444444432 24689999999999652 234445555444 369999
Q ss_pred EEecCCCCChHHHHHHHHHHHH
Q 001745 636 QISALKGEKVDDLLETIMLVAE 657 (1018)
Q Consensus 636 eISAktGeGIdeLleaIl~lae 657 (1018)
++|||.+.||++.|+.+...+-
T Consensus 157 EtSAK~~~NV~~AFe~ia~~aL 178 (210)
T KOG0394|consen 157 ETSAKEATNVDEAFEEIARRAL 178 (210)
T ss_pred EecccccccHHHHHHHHHHHHH
Confidence 9999999999999999987653
No 133
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.78 E-value=3.6e-18 Score=180.05 Aligned_cols=156 Identities=17% Similarity=0.158 Sum_probs=114.3
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCE
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADi 568 (1018)
....+|+++|+.|+|||||++++....+.... ..|.+..++...+..++....+.||||||++.|..++..+++.+|+
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~--~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 88 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY--EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC 88 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCcc--CCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccE
Confidence 45579999999999999999999877665333 3354455555555556667899999999999999999999999999
Q ss_pred EEEEEecCCCCChhHHH-HHHHHH--HcCCCEEEEEecCCCCCCCh-HHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCC
Q 001745 569 AVIVVAADDGIRPQTNE-AIAHAK--AAGVPIVIAINKIDKDGANP-ERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (1018)
Q Consensus 569 VILVVDAddGv~~QT~E-~I~~ak--~~gIPIIVVINKiDL~~a~~-erv~~eL~e~gl~~e~~g~~vpiVeISAktGeG 644 (1018)
+|+|||+++....+... ++..+. ..++|+|+|+||+|+..... .... .+... ..++|+++||++|.|
T Consensus 89 ~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~-~~~~~--------~~~~~~e~SAk~~~~ 159 (219)
T PLN03071 89 AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRK--------KNLQYYEISAKSNYN 159 (219)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHHHH-HHHHh--------cCCEEEEcCCCCCCC
Confidence 99999999854333222 222222 24789999999999953221 1111 22211 136799999999999
Q ss_pred hHHHHHHHHHH
Q 001745 645 VDDLLETIMLV 655 (1018)
Q Consensus 645 IdeLleaIl~l 655 (1018)
|+++|++|...
T Consensus 160 i~~~f~~l~~~ 170 (219)
T PLN03071 160 FEKPFLYLARK 170 (219)
T ss_pred HHHHHHHHHHH
Confidence 99999999754
No 134
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.78 E-value=5.6e-18 Score=167.62 Aligned_cols=155 Identities=19% Similarity=0.222 Sum_probs=112.1
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEE
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiV 569 (1018)
.-++|+++|++|+|||||+++|....+.... +.|....+....+.+++....+.|||||||+.|...+..++..+|++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 83 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQ--GATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANAL 83 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 3478999999999999999999876654333 33443334444445566667899999999999999999999999999
Q ss_pred EEEEecCCCCChh----HHHHHHHHHHcCCCEEEEEecCCCCCCC--hHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCC
Q 001745 570 VIVVAADDGIRPQ----TNEAIAHAKAAGVPIVIAINKIDKDGAN--PERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (1018)
Q Consensus 570 ILVVDAddGv~~Q----T~E~I~~ak~~gIPIIVVINKiDL~~a~--~erv~~eL~e~gl~~e~~g~~vpiVeISAktGe 643 (1018)
++|+|++++...+ +...+..+...++|+++++||+|+.... .......+.... ..+++++||++|.
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~--------~~~~~~~Sa~~~~ 155 (169)
T cd04114 84 ILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQ--------DMYYLETSAKESD 155 (169)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHc--------CCeEEEeeCCCCC
Confidence 9999998753322 2222233333478999999999985321 122223333221 2579999999999
Q ss_pred ChHHHHHHHHH
Q 001745 644 KVDDLLETIML 654 (1018)
Q Consensus 644 GIdeLleaIl~ 654 (1018)
|++++|++|..
T Consensus 156 gv~~l~~~i~~ 166 (169)
T cd04114 156 NVEKLFLDLAC 166 (169)
T ss_pred CHHHHHHHHHH
Confidence 99999999874
No 135
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.78 E-value=4.7e-18 Score=172.01 Aligned_cols=156 Identities=19% Similarity=0.179 Sum_probs=108.6
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCE
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADi 568 (1018)
....+|+++|.+++|||||+++|....+. ... .|.+.....+. + ....+.||||||++.|..++..+++.+|+
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~--~t~~~~~~~~~--~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ 83 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTI--PTIGFNVETVT--Y--KNISFTVWDVGGQDKIRPLWRHYYTNTQG 83 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcC--CccccceEEEE--E--CCEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 34589999999999999999999765553 222 34443333332 2 45789999999999999999999999999
Q ss_pred EEEEEecCCCCC-hhHHHHHHHHH----HcCCCEEEEEecCCCCCCC-hHHHHHHHHhcCCCCCCCCCCCcEEEEecCCC
Q 001745 569 AVIVVAADDGIR-PQTNEAIAHAK----AAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (1018)
Q Consensus 569 VILVVDAddGv~-~QT~E~I~~ak----~~gIPIIVVINKiDL~~a~-~erv~~eL~e~gl~~e~~g~~vpiVeISAktG 642 (1018)
+|+|+|+++... ....+.+..+. ..++|++|++||+|+.+.. .+++...+ ++.. .....+.++++||++|
T Consensus 84 ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~---~~~~-~~~~~~~~~~~Sa~~g 159 (175)
T smart00177 84 LIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKL---GLHS-IRDRNWYIQPTCATSG 159 (175)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHh---Cccc-cCCCcEEEEEeeCCCC
Confidence 999999987321 22233333321 2368999999999996542 23333322 2211 1112356789999999
Q ss_pred CChHHHHHHHHHH
Q 001745 643 EKVDDLLETIMLV 655 (1018)
Q Consensus 643 eGIdeLleaIl~l 655 (1018)
.||+++|++|...
T Consensus 160 ~gv~e~~~~l~~~ 172 (175)
T smart00177 160 DGLYEGLTWLSNN 172 (175)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999998643
No 136
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.78 E-value=2.8e-18 Score=168.34 Aligned_cols=150 Identities=23% Similarity=0.297 Sum_probs=106.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEEE
Q 001745 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIV 572 (1018)
Q Consensus 493 kVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVILV 572 (1018)
+|+++|++|+|||||++++...... ....|.++....+.+ ....+.||||||++.|...+...+..+|++++|
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~---~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 73 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV---TTIPTIGFNVETVEY----KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFV 73 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCcCcceEEEEE----CCEEEEEEECCCChhhHHHHHHHhccCCEEEEE
Confidence 4899999999999999999977632 122333333333332 346799999999999999999999999999999
Q ss_pred EecCCCC-ChhHHHHH----HHHHHcCCCEEEEEecCCCCCCC-hHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCChH
Q 001745 573 VAADDGI-RPQTNEAI----AHAKAAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVD 646 (1018)
Q Consensus 573 VDAddGv-~~QT~E~I----~~ak~~gIPIIVVINKiDL~~a~-~erv~~eL~e~gl~~e~~g~~vpiVeISAktGeGId 646 (1018)
+|+++.- ..+....+ ......+.|+++++||+|+.... .+++.+.+..... ....++++++||++|.|++
T Consensus 74 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~gv~ 149 (158)
T cd00878 74 VDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKI----LGRRWHIQPCSAVTGDGLD 149 (158)
T ss_pred EECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhc----cCCcEEEEEeeCCCCCCHH
Confidence 9999742 11222222 22223578999999999996533 3344433322111 1124689999999999999
Q ss_pred HHHHHHH
Q 001745 647 DLLETIM 653 (1018)
Q Consensus 647 eLleaIl 653 (1018)
++|++|.
T Consensus 150 ~~~~~l~ 156 (158)
T cd00878 150 EGLDWLL 156 (158)
T ss_pred HHHHHHh
Confidence 9999986
No 137
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.78 E-value=6.7e-18 Score=174.47 Aligned_cols=155 Identities=20% Similarity=0.225 Sum_probs=113.6
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEE
Q 001745 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (1018)
Q Consensus 491 ~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVI 570 (1018)
.++|+|+|++|+|||||+++|....+..... .|..+.++...+.+++..+.+.||||||++.|..++..++..+|++|
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYI--TTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcC--ccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 4789999999999999999999877653332 34444444444445666678999999999999999999999999999
Q ss_pred EEEecCCCCChhH-HHHHHHHHH--cCCCEEEEEecCCCCCC---ChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCC
Q 001745 571 IVVAADDGIRPQT-NEAIAHAKA--AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (1018)
Q Consensus 571 LVVDAddGv~~QT-~E~I~~ak~--~gIPIIVVINKiDL~~a---~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGeG 644 (1018)
+|+|+++....+. ..++..+.. ..+|++|++||+|+... ..++........ .++++++||++|.|
T Consensus 84 lv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~e~Sa~~~~g 154 (199)
T cd04110 84 VVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQM---------GISLFETSAKENIN 154 (199)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHc---------CCEEEEEECCCCcC
Confidence 9999987433222 223333332 35789999999999542 222222222222 25799999999999
Q ss_pred hHHHHHHHHHHH
Q 001745 645 VDDLLETIMLVA 656 (1018)
Q Consensus 645 IdeLleaIl~la 656 (1018)
|+++|++|....
T Consensus 155 i~~lf~~l~~~~ 166 (199)
T cd04110 155 VEEMFNCITELV 166 (199)
T ss_pred HHHHHHHHHHHH
Confidence 999999997654
No 138
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.78 E-value=6.3e-18 Score=168.18 Aligned_cols=153 Identities=18% Similarity=0.213 Sum_probs=110.6
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVIL 571 (1018)
.+|+++|++++|||||+++|....+.... ..|.+..++...+.+.+....+.||||||++.|..++..++..+|++++
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~ 78 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSH--ISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFL 78 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCC--CCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEE
Confidence 36999999999999999999987775433 3454444444445556667789999999999999999999999999999
Q ss_pred EEecCCCCChhHH-HHHHHHH---HcCCCEEEEEecCCCCCCCh--HHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCCh
Q 001745 572 VVAADDGIRPQTN-EAIAHAK---AAGVPIVIAINKIDKDGANP--ERVMQELSSIGLMPEDWGGDIPMVQISALKGEKV 645 (1018)
Q Consensus 572 VVDAddGv~~QT~-E~I~~ak---~~gIPIIVVINKiDL~~a~~--erv~~eL~e~gl~~e~~g~~vpiVeISAktGeGI 645 (1018)
|+|+++.-..+.. .++..+. ..++|+++++||+|+..... .+....+.+. + .++++++||++|.||
T Consensus 79 v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~------~--~~~~~e~Sa~~~~~v 150 (161)
T cd04117 79 VYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKE------Y--GMDFFETSACTNSNI 150 (161)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHH------c--CCEEEEEeCCCCCCH
Confidence 9999874222221 2222222 23689999999999954321 1222222221 1 267999999999999
Q ss_pred HHHHHHHHH
Q 001745 646 DDLLETIML 654 (1018)
Q Consensus 646 deLleaIl~ 654 (1018)
+++|++|..
T Consensus 151 ~~~f~~l~~ 159 (161)
T cd04117 151 KESFTRLTE 159 (161)
T ss_pred HHHHHHHHh
Confidence 999999864
No 139
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.78 E-value=6.1e-18 Score=166.09 Aligned_cols=152 Identities=19% Similarity=0.222 Sum_probs=108.5
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVIL 571 (1018)
.+|+++|++|+|||||+++|....+.....+.++ ..+....+.+.+....+.||||||++.|..++...++.+|++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 78 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIG--VDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVIL 78 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCccc--ceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEE
Confidence 4799999999999999999998766543333222 22222223345566789999999999999999999999999999
Q ss_pred EEecCCCCChhHHHH-HHHH----HHcCCCEEEEEecCCCCCC--ChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCC
Q 001745 572 VVAADDGIRPQTNEA-IAHA----KAAGVPIVIAINKIDKDGA--NPERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (1018)
Q Consensus 572 VVDAddGv~~QT~E~-I~~a----k~~gIPIIVVINKiDL~~a--~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGeG 644 (1018)
|+|+++....+.... +..+ ...++|+++++||+|+... +.++........ .++++++||++|.|
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~---------~~~~~~~Sa~~~~g 149 (161)
T cd01863 79 VYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKH---------NMLFIETSAKTRDG 149 (161)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHHc---------CCEEEEEecCCCCC
Confidence 999987433222221 2222 2357889999999999632 223333222222 36799999999999
Q ss_pred hHHHHHHHHH
Q 001745 645 VDDLLETIML 654 (1018)
Q Consensus 645 IdeLleaIl~ 654 (1018)
++++++.+..
T Consensus 150 i~~~~~~~~~ 159 (161)
T cd01863 150 VQQAFEELVE 159 (161)
T ss_pred HHHHHHHHHH
Confidence 9999998864
No 140
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.78 E-value=1.2e-17 Score=163.30 Aligned_cols=157 Identities=24% Similarity=0.336 Sum_probs=112.9
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCccc-ccccCCceeeeeeEEEEEecCCceecEEEEeCCCccch----------HHH
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAF----------GAM 558 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v~-~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F----------~~~ 558 (1018)
++++|+++|++|+|||||+++|.+.... ....+++|++.....+. .+ +..+.+|||||+..+ ..+
T Consensus 1 ~~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~iiDtpG~~~~~~~~~~~e~~~~~ 76 (174)
T cd01895 1 DPIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFE--YD--GKKYTLIDTAGIRRKGKVEEGIEKYSVL 76 (174)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEE--EC--CeeEEEEECCCCccccchhccHHHHHHH
Confidence 3678999999999999999999876533 34455666554322222 23 345899999996432 222
Q ss_pred H-HhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCC---hHHHHHHHHhcCCCCCCCCCCCcE
Q 001745 559 R-ARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPM 634 (1018)
Q Consensus 559 r-~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~---~erv~~eL~e~gl~~e~~g~~vpi 634 (1018)
. ...+..+|++++|+|+.++...+....+..+...+.|+++++||+|+.... .+.+.+.+... +.. ....++
T Consensus 77 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~---~~~~~~ 152 (174)
T cd01895 77 RTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRK-LPF---LDYAPI 152 (174)
T ss_pred HHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhh-ccc---ccCCce
Confidence 2 235678999999999999888888777777777889999999999996542 23333344332 110 124689
Q ss_pred EEEecCCCCChHHHHHHHHH
Q 001745 635 VQISALKGEKVDDLLETIML 654 (1018)
Q Consensus 635 VeISAktGeGIdeLleaIl~ 654 (1018)
+++||++|.|++++++++..
T Consensus 153 ~~~Sa~~~~~i~~~~~~l~~ 172 (174)
T cd01895 153 VFISALTGQGVDKLFDAIDE 172 (174)
T ss_pred EEEeccCCCCHHHHHHHHHH
Confidence 99999999999999999864
No 141
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=5e-18 Score=174.74 Aligned_cols=156 Identities=23% Similarity=0.267 Sum_probs=123.2
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCE
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADi 568 (1018)
.+..+|+++|+.++|||||+.+++.+.+...+. .|+++++....+.+.+..+++++|||+|||+|..+...|++.+.+
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~Yq--ATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~v 97 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQ--ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV 97 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhccccc--ceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeE
Confidence 355899999999999999999999998876554 477777777777778899999999999999999999999999999
Q ss_pred EEEEEecCCC-CChhHHHHHHHHHHcC----CCEEEEEecCCCCCCCh---HHHHHHHHhcCCCCCCCCCCCcEEEEecC
Q 001745 569 AVIVVAADDG-IRPQTNEAIAHAKAAG----VPIVIAINKIDKDGANP---ERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (1018)
Q Consensus 569 VILVVDAddG-v~~QT~E~I~~ak~~g----IPIIVVINKiDL~~a~~---erv~~eL~e~gl~~e~~g~~vpiVeISAk 640 (1018)
+|+|||.++. ...++..+|+.+...+ +-+++|+||.||.+... ++-.....++ ++.|+++||+
T Consensus 98 aviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel---------~a~f~etsak 168 (221)
T KOG0094|consen 98 AVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKEL---------NAEFIETSAK 168 (221)
T ss_pred EEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHh---------CcEEEEeccc
Confidence 9999999983 4456666776665532 44889999999964311 1111111222 2579999999
Q ss_pred CCCChHHHHHHHHHH
Q 001745 641 KGEKVDDLLETIMLV 655 (1018)
Q Consensus 641 tGeGIdeLleaIl~l 655 (1018)
.|.||.+||..|...
T Consensus 169 ~g~NVk~lFrrIaa~ 183 (221)
T KOG0094|consen 169 AGENVKQLFRRIAAA 183 (221)
T ss_pred CCCCHHHHHHHHHHh
Confidence 999999999998643
No 142
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=1.8e-18 Score=177.69 Aligned_cols=158 Identities=21% Similarity=0.231 Sum_probs=123.3
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCE
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADi 568 (1018)
.+..+|+++|..++|||||+-++..+.|.... ..|++-.++...+.++...+++.+|||+|+|+|..+...|++.|++
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~--e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~A 80 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENI--EPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANA 80 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCcccccc--ccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcE
Confidence 35678999999999999999999988886543 3477777777777778888899999999999999999999999999
Q ss_pred EEEEEecCCCCChh-HHHHHHHHHHcCCC---EEEEEecCCCCC---CChHHHHHHHHhcCCCCCCCCCCCcEEEEecCC
Q 001745 569 AVIVVAADDGIRPQ-TNEAIAHAKAAGVP---IVIAINKIDKDG---ANPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (1018)
Q Consensus 569 VILVVDAddGv~~Q-T~E~I~~ak~~gIP---IIVVINKiDL~~---a~~erv~~eL~e~gl~~e~~g~~vpiVeISAkt 641 (1018)
+|+|||+++.-..+ .+.++..++...-| +.+|+||+||.. ...++........+ ..|+++||||
T Consensus 81 AivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~g---------ll~~ETSAKT 151 (200)
T KOG0092|consen 81 AIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQG---------LLFFETSAKT 151 (200)
T ss_pred EEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcC---------CEEEEEeccc
Confidence 99999999844333 34455556554334 566999999954 23344444444433 5799999999
Q ss_pred CCChHHHHHHHHHHHH
Q 001745 642 GEKVDDLLETIMLVAE 657 (1018)
Q Consensus 642 GeGIdeLleaIl~lae 657 (1018)
|.||+++|..|.....
T Consensus 152 g~Nv~~if~~Ia~~lp 167 (200)
T KOG0092|consen 152 GENVNEIFQAIAEKLP 167 (200)
T ss_pred ccCHHHHHHHHHHhcc
Confidence 9999999999975543
No 143
>PRK04213 GTP-binding protein; Provisional
Probab=99.78 E-value=7.8e-18 Score=172.84 Aligned_cols=154 Identities=27% Similarity=0.398 Sum_probs=108.3
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCC-----------ccchHHH
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG-----------HEAFGAM 558 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPG-----------HE~F~~~ 558 (1018)
+.++|+++|++|+|||||+++|.+..+.....+++|++... +.+. .++|||||| .+.|..+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~----~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 79 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNH----YDWG----DFILTDLPGFGFMSGVPKEVQEKIKDE 79 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceE----Eeec----ceEEEeCCccccccccCHHHHHHHHHH
Confidence 55799999999999999999999877766666777765332 2111 589999999 3556655
Q ss_pred HHhhh----ccCCEEEEEEecCCC-----------CChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHH-HhcC
Q 001745 559 RARGA----RVTDIAVIVVAADDG-----------IRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQEL-SSIG 622 (1018)
Q Consensus 559 r~rg~----~~ADiVILVVDAddG-----------v~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL-~e~g 622 (1018)
+..++ ..+|++++|+|.++. ..+++.+++..+...++|+++++||+|+.... .....++ ...+
T Consensus 80 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~-~~~~~~~~~~~~ 158 (201)
T PRK04213 80 IVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR-DEVLDEIAERLG 158 (201)
T ss_pred HHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcH-HHHHHHHHHHhc
Confidence 54443 456899999998652 12344566777777899999999999996543 2222332 2233
Q ss_pred CC--CCCCCCCCcEEEEecCCCCChHHHHHHHHHH
Q 001745 623 LM--PEDWGGDIPMVQISALKGEKVDDLLETIMLV 655 (1018)
Q Consensus 623 l~--~e~~g~~vpiVeISAktGeGIdeLleaIl~l 655 (1018)
+. ...| ..+++++||++| ||++++++|...
T Consensus 159 ~~~~~~~~--~~~~~~~SA~~g-gi~~l~~~l~~~ 190 (201)
T PRK04213 159 LYPPWRQW--QDIIAPISAKKG-GIEELKEAIRKR 190 (201)
T ss_pred CCcccccc--CCcEEEEecccC-CHHHHHHHHHHh
Confidence 21 1111 246899999999 999999999754
No 144
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.77 E-value=4.4e-18 Score=170.60 Aligned_cols=153 Identities=21% Similarity=0.162 Sum_probs=106.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEEE
Q 001745 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIV 572 (1018)
Q Consensus 493 kVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVILV 572 (1018)
+|+++|..++|||||+++|....+.. ...|.+.....+. .....+.||||||++.|..++..++..+|++|+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~---~~~T~~~~~~~~~----~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V 73 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ---PIPTIGFNVETVE----YKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFV 73 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC---cCCcCceeEEEEE----ECCEEEEEEECCCChhcchHHHHHhccCCEEEEE
Confidence 48999999999999999998865432 2345444443332 2457899999999999999999999999999999
Q ss_pred EecCCCCC-hhHHHHHHHHH----HcCCCEEEEEecCCCCCC-ChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCChH
Q 001745 573 VAADDGIR-PQTNEAIAHAK----AAGVPIVIAINKIDKDGA-NPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVD 646 (1018)
Q Consensus 573 VDAddGv~-~QT~E~I~~ak----~~gIPIIVVINKiDL~~a-~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGeGId 646 (1018)
+|+++.-. ....+.+..+. ..+.|+++++||+|+... ..+++...+....+ .....+.++++||++|.||+
T Consensus 74 ~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~Sa~~g~gv~ 150 (169)
T cd04158 74 VDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKL---CCGRSWYIQGCDARSGMGLY 150 (169)
T ss_pred EeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccc---cCCCcEEEEeCcCCCCCCHH
Confidence 99987321 11222222221 235799999999999643 33333333321111 01113468899999999999
Q ss_pred HHHHHHHHH
Q 001745 647 DLLETIMLV 655 (1018)
Q Consensus 647 eLleaIl~l 655 (1018)
++|++|...
T Consensus 151 ~~f~~l~~~ 159 (169)
T cd04158 151 EGLDWLSRQ 159 (169)
T ss_pred HHHHHHHHH
Confidence 999999743
No 145
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.77 E-value=3.7e-18 Score=166.15 Aligned_cols=146 Identities=25% Similarity=0.364 Sum_probs=107.5
Q ss_pred EEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHH------HHHhhh--ccCC
Q 001745 496 IMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGA------MRARGA--RVTD 567 (1018)
Q Consensus 496 ImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~------~r~rg~--~~AD 567 (1018)
|+|++|+|||||+++|.+......+.+++|.+.....+.+ ++ ..+.||||||++.|.. ++..++ ..+|
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~--~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d 76 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKL--GG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPD 76 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEee--CC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCc
Confidence 5899999999999999987766667788888765544443 33 5799999999987764 345555 4899
Q ss_pred EEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCC-hHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCChH
Q 001745 568 IAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVD 646 (1018)
Q Consensus 568 iVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~-~erv~~eL~e~gl~~e~~g~~vpiVeISAktGeGId 646 (1018)
++|+|+|+.+. .+....+..+...++|+|+++||+|+.... .......+... + .++++++||++|.|++
T Consensus 77 ~vi~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~------~--~~~~~~iSa~~~~~~~ 146 (158)
T cd01879 77 LIVNVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKLSEL------L--GVPVVPTSARKGEGID 146 (158)
T ss_pred EEEEEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhcccccchhhHHHHHHh------h--CCCeEEEEccCCCCHH
Confidence 99999999873 333445556666799999999999996432 11112222221 1 2579999999999999
Q ss_pred HHHHHHHHH
Q 001745 647 DLLETIMLV 655 (1018)
Q Consensus 647 eLleaIl~l 655 (1018)
+++++|...
T Consensus 147 ~l~~~l~~~ 155 (158)
T cd01879 147 ELKDAIAEL 155 (158)
T ss_pred HHHHHHHHH
Confidence 999998754
No 146
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.77 E-value=1e-17 Score=170.65 Aligned_cols=155 Identities=17% Similarity=0.169 Sum_probs=111.3
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVIL 571 (1018)
.+|+|+|++++|||||+++|...++...+.. .|.+..++...+.+++..+.+.||||||++.|..++..++..+|++||
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iil 79 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQ-NTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIV 79 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcc-cceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEE
Confidence 3799999999999999999998877543222 233333333345556777889999999999999999889999999999
Q ss_pred EEecCCCCChhH-HHHHHHHHH--cCCCEEEEEecCCCCCCCh-------HHHHHHHHhcCCCCCCCCCCCcEEEEecCC
Q 001745 572 VVAADDGIRPQT-NEAIAHAKA--AGVPIVIAINKIDKDGANP-------ERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (1018)
Q Consensus 572 VVDAddGv~~QT-~E~I~~ak~--~gIPIIVVINKiDL~~a~~-------erv~~eL~e~gl~~e~~g~~vpiVeISAkt 641 (1018)
|+|+++....+. ..++..+.. .++|+|+|+||+|+..... .+........ .++++++||++
T Consensus 80 v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~---------~~~~~~~Sa~~ 150 (193)
T cd04118 80 CYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEI---------KAQHFETSSKT 150 (193)
T ss_pred EEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHc---------CCeEEEEeCCC
Confidence 999987432222 223333333 2689999999999853221 1111111111 25789999999
Q ss_pred CCChHHHHHHHHHHH
Q 001745 642 GEKVDDLLETIMLVA 656 (1018)
Q Consensus 642 GeGIdeLleaIl~la 656 (1018)
|.|+++||++|....
T Consensus 151 ~~gv~~l~~~i~~~~ 165 (193)
T cd04118 151 GQNVDELFQKVAEDF 165 (193)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998654
No 147
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=3.5e-18 Score=178.01 Aligned_cols=156 Identities=21% Similarity=0.161 Sum_probs=124.5
Q ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCC
Q 001745 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTD 567 (1018)
Q Consensus 488 ~~r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~AD 567 (1018)
..+..+|+++|++++|||+|+.+|..+.+.... ..|.+|++....+..++....+++|||+|+++|..+...|++.|+
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~--~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~ 86 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSF--ISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAM 86 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccCcCCc--cceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcC
Confidence 346679999999999999999999988876544 357888888888888999999999999999999999999999999
Q ss_pred EEEEEEecCCCCChh----HHHHHHHHHHcCCCEEEEEecCCCCCC---ChHHHHHHHHhcCCCCCCCCCCCcEEEEecC
Q 001745 568 IAVIVVAADDGIRPQ----TNEAIAHAKAAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (1018)
Q Consensus 568 iVILVVDAddGv~~Q----T~E~I~~ak~~gIPIIVVINKiDL~~a---~~erv~~eL~e~gl~~e~~g~~vpiVeISAk 640 (1018)
+++||||+++..... |++.++.....++|+++|+||+|+... ..++-.+...++| +.|+++||+
T Consensus 87 gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G---------~~F~EtSAk 157 (207)
T KOG0078|consen 87 GILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYG---------IKFFETSAK 157 (207)
T ss_pred eeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhC---------CeEEEcccc
Confidence 999999999743222 334444444458999999999999651 2333333334443 689999999
Q ss_pred CCCChHHHHHHHHH
Q 001745 641 KGEKVDDLLETIML 654 (1018)
Q Consensus 641 tGeGIdeLleaIl~ 654 (1018)
+|.||++.|-.|..
T Consensus 158 ~~~NI~eaF~~La~ 171 (207)
T KOG0078|consen 158 TNFNIEEAFLSLAR 171 (207)
T ss_pred CCCCHHHHHHHHHH
Confidence 99999999988864
No 148
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.77 E-value=3.6e-18 Score=194.60 Aligned_cols=161 Identities=28% Similarity=0.407 Sum_probs=130.4
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcC-cccccccCCceeeeeeEEEEEecCCceecEEEEeCCC----------ccchHH
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKT-KVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG----------HEAFGA 557 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~-~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPG----------HE~F~~ 557 (1018)
..+.+|+|+|.||+|||||+|+|.+. +...+..+|+|+|. +...++.++..+.|+||+| +|.|..
T Consensus 176 ~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~----I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv 251 (444)
T COG1160 176 TDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDS----IDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSV 251 (444)
T ss_pred CCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccc----eeeeEEECCeEEEEEECCCCCcccccccceEEEee
Confidence 46899999999999999999999964 56788899999984 3333334556899999999 577877
Q ss_pred HHHh-hhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCC---ChHHHHHHHHhcCCCCCCCCCCCc
Q 001745 558 MRAR-GARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIP 633 (1018)
Q Consensus 558 ~r~r-g~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a---~~erv~~eL~e~gl~~e~~g~~vp 633 (1018)
.+.. .+..+|+++||+|+.+++..|+...+.++...+.++|||+||||+... ..+++..++.. .+..- .-.+
T Consensus 252 ~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~-~l~~l---~~a~ 327 (444)
T COG1160 252 ARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRR-KLPFL---DFAP 327 (444)
T ss_pred hhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHH-Hhccc---cCCe
Confidence 7664 458999999999999999999999999999999999999999998653 33444445544 22222 2379
Q ss_pred EEEEecCCCCChHHHHHHHHHHHH
Q 001745 634 MVQISALKGEKVDDLLETIMLVAE 657 (1018)
Q Consensus 634 iVeISAktGeGIdeLleaIl~lae 657 (1018)
++++||++|.|+.+||+++....+
T Consensus 328 i~~iSA~~~~~i~~l~~~i~~~~~ 351 (444)
T COG1160 328 IVFISALTGQGLDKLFEAIKEIYE 351 (444)
T ss_pred EEEEEecCCCChHHHHHHHHHHHH
Confidence 999999999999999999986654
No 149
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.77 E-value=5.9e-18 Score=173.01 Aligned_cols=155 Identities=18% Similarity=0.180 Sum_probs=107.9
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCE
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADi 568 (1018)
.+..+|+++|..++|||||+++|....+.. . ..|.++....+. .....+.+|||||++.|..++..+++.+|+
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~-~--~pt~g~~~~~~~----~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~ 87 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-T--IPTIGFNVETVE----YKNISFTVWDVGGQDKIRPLWRHYFQNTQG 87 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCcc-c--cCCcceeEEEEE----ECCEEEEEEECCCCHHHHHHHHHHhccCCE
Confidence 455789999999999999999998665532 2 234444333322 345789999999999999999999999999
Q ss_pred EEEEEecCCCCChh-HHHHHHHH----HHcCCCEEEEEecCCCCCCCh-HHHHHHHHhcCCCCCCCCCCCcEEEEecCCC
Q 001745 569 AVIVVAADDGIRPQ-TNEAIAHA----KAAGVPIVIAINKIDKDGANP-ERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (1018)
Q Consensus 569 VILVVDAddGv~~Q-T~E~I~~a----k~~gIPIIVVINKiDL~~a~~-erv~~eL~e~gl~~e~~g~~vpiVeISAktG 642 (1018)
+|+|+|+++....+ ..+.+..+ ...++|++|++||+|++.... +++...+ ++.... ...+.++++||++|
T Consensus 88 iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l---~l~~~~-~~~~~~~~~Sa~~g 163 (181)
T PLN00223 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKL---GLHSLR-QRHWYIQSTCATSG 163 (181)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHh---CccccC-CCceEEEeccCCCC
Confidence 99999998743211 12222222 124789999999999965432 2222222 221110 11345778999999
Q ss_pred CChHHHHHHHHH
Q 001745 643 EKVDDLLETIML 654 (1018)
Q Consensus 643 eGIdeLleaIl~ 654 (1018)
+||.++|++|..
T Consensus 164 ~gv~e~~~~l~~ 175 (181)
T PLN00223 164 EGLYEGLDWLSN 175 (181)
T ss_pred CCHHHHHHHHHH
Confidence 999999999964
No 150
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.77 E-value=3.6e-18 Score=194.58 Aligned_cols=151 Identities=25% Similarity=0.430 Sum_probs=126.2
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCccc-ccccCCceeeeeeEEEEEecCCceecEEEEeCCCccc-----hHHH----HHh
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA-----FGAM----RAR 561 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~-~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~-----F~~~----r~r 561 (1018)
|+|+|+|.||+|||||+|+|.+.+.+ +.+.+|+|+|-.+....+ .+..+.+|||+|.+. |... ...
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~----~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~ 79 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEW----LGREFILIDTGGLDDGDEDELQELIREQALI 79 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEE----cCceEEEEECCCCCcCCchHHHHHHHHHHHH
Confidence 88999999999999999999987765 678899999987766654 345699999999653 3322 334
Q ss_pred hhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHhcCCCCCCCCCCCcEEEEecCC
Q 001745 562 GARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (1018)
Q Consensus 562 g~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~e~~g~~vpiVeISAkt 641 (1018)
.+..||++|||+|+..|+++++.+..++++..++|+|+|+||+|-. ..+....++..+|+ -.++++||.+
T Consensus 80 Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~--~~e~~~~efyslG~--------g~~~~ISA~H 149 (444)
T COG1160 80 AIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNL--KAEELAYEFYSLGF--------GEPVPISAEH 149 (444)
T ss_pred HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCc--hhhhhHHHHHhcCC--------CCceEeehhh
Confidence 5688999999999999999999999999998889999999999974 45556666777775 3589999999
Q ss_pred CCChHHHHHHHHHHH
Q 001745 642 GEKVDDLLETIMLVA 656 (1018)
Q Consensus 642 GeGIdeLleaIl~la 656 (1018)
|.|+.+|+++++...
T Consensus 150 g~Gi~dLld~v~~~l 164 (444)
T COG1160 150 GRGIGDLLDAVLELL 164 (444)
T ss_pred ccCHHHHHHHHHhhc
Confidence 999999999998654
No 151
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.77 E-value=7.1e-18 Score=196.80 Aligned_cols=161 Identities=24% Similarity=0.379 Sum_probs=122.0
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCcc-cccccCCceeeeeeEEEEEecCCceecEEEEeCCCc----------cchHH
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH----------EAFGA 557 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~~v-~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGH----------E~F~~ 557 (1018)
...++|+|+|++|+|||||+++|.+... .....+++|++.....+. +++ ..+.||||||. +.|..
T Consensus 209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~--~~~--~~~~l~DTaG~~~~~~~~~~~e~~~~ 284 (472)
T PRK03003 209 GGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIE--LGG--KTWRFVDTAGLRRRVKQASGHEYYAS 284 (472)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEE--ECC--EEEEEEECCCccccccccchHHHHHH
Confidence 3578999999999999999999998754 456778888875443333 333 46889999994 55555
Q ss_pred HHH-hhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCCh-HHHHHHHHhcCCCCCCCCCCCcEE
Q 001745 558 MRA-RGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANP-ERVMQELSSIGLMPEDWGGDIPMV 635 (1018)
Q Consensus 558 ~r~-rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~-erv~~eL~e~gl~~e~~g~~vpiV 635 (1018)
++. ..+..+|++|+|+|++++...+....+..+...++|+|+|+||+|+..... ..+..++.. .+... ..++++
T Consensus 285 ~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~-~l~~~---~~~~~~ 360 (472)
T PRK03003 285 LRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDEDRRYYLEREIDR-ELAQV---PWAPRV 360 (472)
T ss_pred HHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChhHHHHHHHHHHH-hcccC---CCCCEE
Confidence 554 356899999999999999999999888888888999999999999964322 222222222 11111 136899
Q ss_pred EEecCCCCChHHHHHHHHHHHH
Q 001745 636 QISALKGEKVDDLLETIMLVAE 657 (1018)
Q Consensus 636 eISAktGeGIdeLleaIl~lae 657 (1018)
++||++|.||++||+.|..+.+
T Consensus 361 ~~SAk~g~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 361 NISAKTGRAVDKLVPALETALE 382 (472)
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999987654
No 152
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.77 E-value=1e-17 Score=163.09 Aligned_cols=152 Identities=20% Similarity=0.239 Sum_probs=108.6
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVIL 571 (1018)
.+|+++|.+|+|||||+++|....+.....+.++.... ...+.+.+....+.+|||||++.|..++..+++.+|++++
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~ 78 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFF--QKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAIL 78 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEE--EEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEE
Confidence 37999999999999999999987765443333333322 2223334556789999999999999999999999999999
Q ss_pred EEecCCCCChhHH-H---HHHHHHHcCCCEEEEEecCCCCCCC---hHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCC
Q 001745 572 VVAADDGIRPQTN-E---AIAHAKAAGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (1018)
Q Consensus 572 VVDAddGv~~QT~-E---~I~~ak~~gIPIIVVINKiDL~~a~---~erv~~eL~e~gl~~e~~g~~vpiVeISAktGeG 644 (1018)
|+|+++....+.. . .+......++|+++++||+|+.... .+.+....... .++++++||++|.|
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~---------~~~~~~~s~~~~~g 149 (162)
T cd04123 79 VYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSV---------GAKHFETSAKTGKG 149 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHc---------CCEEEEEeCCCCCC
Confidence 9999885432222 2 2222222368999999999996422 22222222222 25789999999999
Q ss_pred hHHHHHHHHH
Q 001745 645 VDDLLETIML 654 (1018)
Q Consensus 645 IdeLleaIl~ 654 (1018)
+++++++|..
T Consensus 150 i~~~~~~l~~ 159 (162)
T cd04123 150 IEELFLSLAK 159 (162)
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 153
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.77 E-value=7.1e-18 Score=193.13 Aligned_cols=161 Identities=29% Similarity=0.403 Sum_probs=121.3
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCc-ccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccch----------HH
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKTK-VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAF----------GA 557 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~~-v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F----------~~ 557 (1018)
...++|+++|++|+|||||+++|.+.. ....+.+++|++.....+. +++ ..+.||||||+..+ ..
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~--~~~--~~~~liDT~G~~~~~~~~~~~e~~~~ 245 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFE--RNG--KKYLLIDTAGIRRKGKVTEGVEKYSV 245 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEE--ECC--cEEEEEECCCccccccchhhHHHHHH
Confidence 456789999999999999999999765 3456778888775433332 333 47999999996443 32
Q ss_pred HH-HhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCC--CChHHHHHHHHhcCCCCCCCCCCCcE
Q 001745 558 MR-ARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDG--ANPERVMQELSSIGLMPEDWGGDIPM 634 (1018)
Q Consensus 558 ~r-~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~--a~~erv~~eL~e~gl~~e~~g~~vpi 634 (1018)
++ ..++..+|++|+|+|++++...++.+.+..+...++|+|+|+||+|+.. ...+.+...+... +. +...+++
T Consensus 246 ~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~-~~---~~~~~~v 321 (429)
T TIGR03594 246 LRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVKDEKTREEFKKELRRK-LP---FLDFAPI 321 (429)
T ss_pred HHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCCCHHHHHHHHHHHHHh-cc---cCCCCce
Confidence 33 2467899999999999999999999999998888999999999999962 1122333333332 11 1124789
Q ss_pred EEEecCCCCChHHHHHHHHHHHH
Q 001745 635 VQISALKGEKVDDLLETIMLVAE 657 (1018)
Q Consensus 635 VeISAktGeGIdeLleaIl~lae 657 (1018)
+++||++|.|++++|++|..+.+
T Consensus 322 i~~SA~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 322 VFISALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999987654
No 154
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.77 E-value=9e-18 Score=179.63 Aligned_cols=154 Identities=16% Similarity=0.173 Sum_probs=113.0
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEE
Q 001745 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (1018)
Q Consensus 491 ~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVI 570 (1018)
..+|+++|+.++|||||+.+|....+.....+ |.... +...+.+++..+.+.||||+|++.|..++..++..+|++|
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~p--Ti~~~-~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI 89 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVP--TVFEN-YTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 89 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCCCCCcCC--ceeee-eEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence 46899999999999999999998877644333 33322 3344556788899999999999999999999999999999
Q ss_pred EEEecCCCCChhH--HHHHHHHHH--cCCCEEEEEecCCCCCC---------------ChHHHHHHHHhcCCCCCCCCCC
Q 001745 571 IVVAADDGIRPQT--NEAIAHAKA--AGVPIVIAINKIDKDGA---------------NPERVMQELSSIGLMPEDWGGD 631 (1018)
Q Consensus 571 LVVDAddGv~~QT--~E~I~~ak~--~gIPIIVVINKiDL~~a---------------~~erv~~eL~e~gl~~e~~g~~ 631 (1018)
||||+++....+. ..++..+.. .++|+|+|+||+|+... ..++..+...+++
T Consensus 90 lVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~--------- 160 (232)
T cd04174 90 LCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLG--------- 160 (232)
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcC---------
Confidence 9999998544332 123333332 36899999999998531 1222222222222
Q ss_pred C-cEEEEecCCCC-ChHHHHHHHHHHH
Q 001745 632 I-PMVQISALKGE-KVDDLLETIMLVA 656 (1018)
Q Consensus 632 v-piVeISAktGe-GIdeLleaIl~la 656 (1018)
+ +|++|||++|+ ||+++|+.+....
T Consensus 161 ~~~~~EtSAktg~~~V~e~F~~~~~~~ 187 (232)
T cd04174 161 AEVYLECSAFTSEKSIHSIFRSASLLC 187 (232)
T ss_pred CCEEEEccCCcCCcCHHHHHHHHHHHH
Confidence 4 59999999998 8999999987643
No 155
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.77 E-value=3e-18 Score=182.19 Aligned_cols=116 Identities=33% Similarity=0.432 Sum_probs=95.5
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcc----------------cccccCCceeeeeeEEEEEecC------CceecEEEEeC
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKV----------------AAAEAGGITQGIGAYKVQVPVD------GKLQPCVFLDT 549 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v----------------~~~e~gGiTqdIga~~V~i~~d------gk~~~ItfIDT 549 (1018)
++|+|+||++||||||+++|+.... ......|+|.......+.+... +..+.++||||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 4799999999999999999974321 1123456776655444443322 44788999999
Q ss_pred CCccchHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCC
Q 001745 550 PGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKD 607 (1018)
Q Consensus 550 PGHE~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~ 607 (1018)
|||+.|...+..++..+|++|||||+.++++.|+.++++++...++|+|+++||+|+.
T Consensus 81 PG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 81 PGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred CCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 9999999999999999999999999999999999999999988899999999999985
No 156
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.77 E-value=3.8e-18 Score=182.69 Aligned_cols=159 Identities=33% Similarity=0.402 Sum_probs=121.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccc------------------cccCCceeeeeeEEEEEecCCceecEEEEeCCCccc
Q 001745 493 VLTIMGHVDHGKTTLLDHIRKTKVAA------------------AEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA 554 (1018)
Q Consensus 493 kVaImGhvdvGKTTLLnrL~~~~v~~------------------~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~ 554 (1018)
+|+++||+|+|||||+++|+...... ....++|.+.....+ .+.+++++|||||||..
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~----~~~~~~i~liDTPG~~~ 76 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASF----QWEDTKVNLIDTPGHMD 76 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEE----EECCEEEEEEeCCCccc
Confidence 48999999999999999997532111 112344443333332 33567899999999999
Q ss_pred hHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHhc-CC--C-------
Q 001745 555 FGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-GL--M------- 624 (1018)
Q Consensus 555 F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e~-gl--~------- 624 (1018)
|...+.++++.+|++|+|+|+.+++..++.+++..+...++|+|+++||+|+..++.+++..++... +. .
T Consensus 77 f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~~ 156 (237)
T cd04168 77 FIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVGL 156 (237)
T ss_pred hHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCcE
Confidence 9999999999999999999999999999999999999999999999999999877776666555431 00 0
Q ss_pred ------------------C-------------CC---------------CCCCCcEEEEecCCCCChHHHHHHHHHH
Q 001745 625 ------------------P-------------ED---------------WGGDIPMVQISALKGEKVDDLLETIMLV 655 (1018)
Q Consensus 625 ------------------~-------------e~---------------~g~~vpiVeISAktGeGIdeLleaIl~l 655 (1018)
. +. -+.-+|++..||.++.|+..|++.|...
T Consensus 157 ~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~ 233 (237)
T cd04168 157 APNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKL 233 (237)
T ss_pred eeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHh
Confidence 0 00 0233688899999999999999998754
No 157
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.77 E-value=1e-18 Score=202.82 Aligned_cols=218 Identities=20% Similarity=0.267 Sum_probs=142.5
Q ss_pred CccHHHHHHHhCCCHHHHHHHHHhCCCcccccccCCHHHHHHHHHhcCCceeecChhhhHHhhhh-cccCChhhhhccCC
Q 001745 411 GMLIEELARNLAIGEGEILGSLYSKGIKPEGVQTLDKDMVKMICKDYEVEVLDADPVKMEEMARK-KDLFDEEDLDKLED 489 (1018)
Q Consensus 411 ~itv~eLa~~l~~~~~~iik~L~~~G~~~~in~~Ld~e~~~lla~E~g~~v~~~~~~~~e~l~~~-~~~~~ee~~~~l~~ 489 (1018)
.+++++|.+.++.....+...|+.. ...+...||++.-. . .+.....+. ..+..+..+ ..+....+......
T Consensus 141 ~~al~~l~G~l~~~~~~~r~~l~~~--~a~iea~iDf~ee~-~-~~~~~~~i~---~~i~~l~~~l~~l~~~~~~~~~~~ 213 (449)
T PRK05291 141 RLALRQLQGALSKLINELREELLEL--LALVEAAIDFPEED-I-EFLSDEKIL---EKLEELIAELEALLASARQGEILR 213 (449)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHH--HHHheEEccCCCCC-c-ccccHHHHH---HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3667888888888888888877765 34444445553310 0 000000000 001111110 11122223334456
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcc-cccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHH--------HH
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAM--------RA 560 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v-~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~--------r~ 560 (1018)
..++|+++|++|+|||||+|+|.+... ...+.+++|+++....+.+ + +..++||||||+..+... ..
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~--~--g~~i~l~DT~G~~~~~~~ie~~gi~~~~ 289 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINL--D--GIPLRLIDTAGIRETDDEVEKIGIERSR 289 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEE--C--CeEEEEEeCCCCCCCccHHHHHHHHHHH
Confidence 778999999999999999999998764 3567788998865544443 3 357999999998765432 22
Q ss_pred hhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHhcCCCCCCCCCCCcEEEEecC
Q 001745 561 RGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (1018)
Q Consensus 561 rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~e~~g~~vpiVeISAk 640 (1018)
..+..+|++++|+|++++...+..+.+.. ..+.|+++|+||+|+....... .....+++++||+
T Consensus 290 ~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~~~~~~--------------~~~~~~~i~iSAk 353 (449)
T PRK05291 290 EAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLTGEIDLE--------------EENGKPVIRISAK 353 (449)
T ss_pred HHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhccccchhh--------------hccCCceEEEEee
Confidence 46788999999999998776655555444 4578999999999995422111 0113579999999
Q ss_pred CCCChHHHHHHHHHH
Q 001745 641 KGEKVDDLLETIMLV 655 (1018)
Q Consensus 641 tGeGIdeLleaIl~l 655 (1018)
+|.|+++|+++|...
T Consensus 354 tg~GI~~L~~~L~~~ 368 (449)
T PRK05291 354 TGEGIDELREAIKEL 368 (449)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999999754
No 158
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.77 E-value=7.3e-18 Score=169.14 Aligned_cols=152 Identities=20% Similarity=0.244 Sum_probs=109.4
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVIL 571 (1018)
.+|+++|++++|||||+.++....+.... ..++. ..+...+.+++....+.||||||++.|..++..+++.+|++|+
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~-~~t~~--~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~ 77 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEY-VPTAF--DNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLL 77 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCC-CCcee--eeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEE
Confidence 37999999999999999999877665432 22332 3344455566777889999999999999999999999999999
Q ss_pred EEecCCCCChhHH--HHHHHHHH--cCCCEEEEEecCCCCCCC---------------hHHHHHHHHhcCCCCCCCCCCC
Q 001745 572 VVAADDGIRPQTN--EAIAHAKA--AGVPIVIAINKIDKDGAN---------------PERVMQELSSIGLMPEDWGGDI 632 (1018)
Q Consensus 572 VVDAddGv~~QT~--E~I~~ak~--~gIPIIVVINKiDL~~a~---------------~erv~~eL~e~gl~~e~~g~~v 632 (1018)
|+|+++....+.. .++..+.. .++|+++++||+|+.... .++........ +..
T Consensus 78 v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~--------~~~ 149 (173)
T cd04130 78 CFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKI--------GAC 149 (173)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHh--------CCC
Confidence 9999985433322 23333333 468999999999985321 01111111111 124
Q ss_pred cEEEEecCCCCChHHHHHHHHH
Q 001745 633 PMVQISALKGEKVDDLLETIML 654 (1018)
Q Consensus 633 piVeISAktGeGIdeLleaIl~ 654 (1018)
+|+++||++|.||++||+.+++
T Consensus 150 ~~~e~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 150 EYIECSALTQKNLKEVFDTAIL 171 (173)
T ss_pred eEEEEeCCCCCCHHHHHHHHHh
Confidence 7999999999999999998864
No 159
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.77 E-value=1.4e-17 Score=159.76 Aligned_cols=151 Identities=23% Similarity=0.318 Sum_probs=111.1
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVIL 571 (1018)
.+|+++|++++|||||+++|.+..+...... |.....+...+..++....+.+|||||++.|..+....+..+|++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~ 78 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKS--TIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAIL 78 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCC--ceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEE
Confidence 4799999999999999999998776554333 43444445555555667889999999999999999999999999999
Q ss_pred EEecCCCCChhH-HHHHHHHHH---cCCCEEEEEecCCCC--CC-ChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCC
Q 001745 572 VVAADDGIRPQT-NEAIAHAKA---AGVPIVIAINKIDKD--GA-NPERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (1018)
Q Consensus 572 VVDAddGv~~QT-~E~I~~ak~---~gIPIIVVINKiDL~--~a-~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGeG 644 (1018)
|+|+++....+. ..++..+.. .+.|+++++||+|+. .. ..+.+...... ..++++++||++|.|
T Consensus 79 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~---------~~~~~~~~sa~~~~~ 149 (159)
T cd00154 79 VYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKE---------NGLLFFETSAKTGEN 149 (159)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHH---------cCCeEEEEecCCCCC
Confidence 999987332222 223333333 358999999999994 22 23333332322 136799999999999
Q ss_pred hHHHHHHHH
Q 001745 645 VDDLLETIM 653 (1018)
Q Consensus 645 IdeLleaIl 653 (1018)
+++++++|.
T Consensus 150 i~~~~~~i~ 158 (159)
T cd00154 150 VEELFQSLA 158 (159)
T ss_pred HHHHHHHHh
Confidence 999999875
No 160
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.77 E-value=1.2e-17 Score=174.67 Aligned_cols=153 Identities=16% Similarity=0.173 Sum_probs=109.6
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCC-ceecEEEEeCCCccchHHHHHhhhccCCEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDG-KLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dg-k~~~ItfIDTPGHE~F~~~r~rg~~~ADiVI 570 (1018)
.+|+++|.+|+|||||+++|.+..+.....+ |..+.++...+.+++ ....+.||||||++.|..++..+++.+|++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~--T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~ii 78 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQ--TIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVF 78 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCC--ceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEE
Confidence 3799999999999999999998777544443 444444444444443 4678999999999999999999999999999
Q ss_pred EEEecCCCCChhH-HHHHHHHHH------cCCCEEEEEecCCCCCCC---hHHHHHHHHhcCCCCCCCCCCCcEEEEecC
Q 001745 571 IVVAADDGIRPQT-NEAIAHAKA------AGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (1018)
Q Consensus 571 LVVDAddGv~~QT-~E~I~~ak~------~gIPIIVVINKiDL~~a~---~erv~~eL~e~gl~~e~~g~~vpiVeISAk 640 (1018)
||+|+++....+. .+++..+.. .+.|+|+|+||+|+.... .++.......+ .++++++||+
T Consensus 79 lV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~---------~~~~~~iSAk 149 (215)
T cd04109 79 LVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQAN---------GMESCLVSAK 149 (215)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHc---------CCEEEEEECC
Confidence 9999987422222 222233322 245799999999995321 12222222222 2578999999
Q ss_pred CCCChHHHHHHHHHH
Q 001745 641 KGEKVDDLLETIMLV 655 (1018)
Q Consensus 641 tGeGIdeLleaIl~l 655 (1018)
+|+||+++|++|...
T Consensus 150 tg~gv~~lf~~l~~~ 164 (215)
T cd04109 150 TGDRVNLLFQQLAAE 164 (215)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999999754
No 161
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.77 E-value=1.2e-17 Score=169.87 Aligned_cols=154 Identities=20% Similarity=0.221 Sum_probs=110.1
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVIL 571 (1018)
++|+++|..++|||||+++|....+.....+ |.+..+....+.+++..+.+.||||||++.|..++...++.+|++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iil 78 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKS--TIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLL 78 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCC--ceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEE
Confidence 4799999999999999999998776543322 33333333334456667889999999999999999999999999999
Q ss_pred EEecCCCCChhH-HHHHHHHH---HcCCCEEEEEecCCCCCC---ChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCC
Q 001745 572 VVAADDGIRPQT-NEAIAHAK---AAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (1018)
Q Consensus 572 VVDAddGv~~QT-~E~I~~ak---~~gIPIIVVINKiDL~~a---~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGeG 644 (1018)
|||+++...... ..++..+. ..+.|+|+++||+|+... +.+......... .++++++||++|.|
T Consensus 79 v~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~evSa~~~~~ 149 (188)
T cd04125 79 VYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSL---------NIPFFETSAKQSIN 149 (188)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHc---------CCeEEEEeCCCCCC
Confidence 999987432221 11222222 235789999999998632 222222222221 25799999999999
Q ss_pred hHHHHHHHHHHH
Q 001745 645 VDDLLETIMLVA 656 (1018)
Q Consensus 645 IdeLleaIl~la 656 (1018)
++++|++|....
T Consensus 150 i~~~f~~l~~~~ 161 (188)
T cd04125 150 VEEAFILLVKLI 161 (188)
T ss_pred HHHHHHHHHHHH
Confidence 999999987654
No 162
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.77 E-value=6.2e-18 Score=170.53 Aligned_cols=153 Identities=23% Similarity=0.254 Sum_probs=107.8
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEE
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiV 569 (1018)
...+|+++|++++|||||+++|....+.. . ..|.+.....+.. ....+.||||||++.|..++..++..+|++
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~--~~t~~~~~~~~~~----~~~~~~l~D~~G~~~~~~~~~~~~~~~d~v 86 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-T--SPTIGSNVEEIVY----KNIRFLMWDIGGQESLRSSWNTYYTNTDAV 86 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-c--CCccccceEEEEE----CCeEEEEEECCCCHHHHHHHHHHhhcCCEE
Confidence 35789999999999999999998766542 2 2344433333322 346799999999999999999999999999
Q ss_pred EEEEecCCCCChh-HHHHHH-HHH---HcCCCEEEEEecCCCCCC-ChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCC
Q 001745 570 VIVVAADDGIRPQ-TNEAIA-HAK---AAGVPIVIAINKIDKDGA-NPERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (1018)
Q Consensus 570 ILVVDAddGv~~Q-T~E~I~-~ak---~~gIPIIVVINKiDL~~a-~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGe 643 (1018)
|+|+|+++..... ..+.+. .+. ..++|+++++||+|+.+. +.+++.+.+...... . ..++++++||++|.
T Consensus 87 i~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~--~--~~~~~~~~SA~~g~ 162 (174)
T cd04153 87 ILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIR--D--HTWHIQGCCALTGE 162 (174)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccc--C--CceEEEecccCCCC
Confidence 9999998743211 122222 222 246899999999999653 334444433211111 1 23679999999999
Q ss_pred ChHHHHHHHH
Q 001745 644 KVDDLLETIM 653 (1018)
Q Consensus 644 GIdeLleaIl 653 (1018)
||+++|++|.
T Consensus 163 gi~e~~~~l~ 172 (174)
T cd04153 163 GLPEGLDWIA 172 (174)
T ss_pred CHHHHHHHHh
Confidence 9999999985
No 163
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.77 E-value=7.3e-18 Score=176.20 Aligned_cols=149 Identities=17% Similarity=0.165 Sum_probs=111.5
Q ss_pred EeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEEEEecC
Q 001745 497 MGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAAD 576 (1018)
Q Consensus 497 mGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVILVVDAd 576 (1018)
+|+.++|||||+.+|....+... ...|.++.++...+.+++....+.||||||++.|..++..+++.+|++|+|||++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~--~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t 78 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKK--YVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVT 78 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCC--CCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECC
Confidence 69999999999999997665432 3446666666666666777889999999999999999999999999999999999
Q ss_pred CCCChhHH-HHHHHHHH--cCCCEEEEEecCCCCCCCh-HHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCChHHHHHHH
Q 001745 577 DGIRPQTN-EAIAHAKA--AGVPIVIAINKIDKDGANP-ERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETI 652 (1018)
Q Consensus 577 dGv~~QT~-E~I~~ak~--~gIPIIVVINKiDL~~a~~-erv~~eL~e~gl~~e~~g~~vpiVeISAktGeGIdeLleaI 652 (1018)
+....+.. .++..+.. .++|+|+|+||+|+..... .+.. .+... ..++|++|||++|.||+++|++|
T Consensus 79 ~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~-~~~~~--------~~~~~~e~SAk~~~~v~~~F~~l 149 (200)
T smart00176 79 ARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSI-TFHRK--------KNLQYYDISAKSNYNFEKPFLWL 149 (200)
T ss_pred ChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCHHHH-HHHHH--------cCCEEEEEeCCCCCCHHHHHHHH
Confidence 86543322 22333332 4789999999999853211 1111 12111 23689999999999999999999
Q ss_pred HHHH
Q 001745 653 MLVA 656 (1018)
Q Consensus 653 l~la 656 (1018)
....
T Consensus 150 ~~~i 153 (200)
T smart00176 150 ARKL 153 (200)
T ss_pred HHHH
Confidence 7543
No 164
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.77 E-value=2.8e-18 Score=175.65 Aligned_cols=156 Identities=13% Similarity=0.185 Sum_probs=110.3
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVIL 571 (1018)
.+|+++|..++|||||+.+|....+..... .|.+..++...+.+++..+.+.+|||+|++.|..++..+++.+|++++
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~--~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iil 78 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYI--QTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILF 78 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCC--CccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEE
Confidence 379999999999999999999887754333 355555554455567777889999999999999999999999999999
Q ss_pred EEecCCCCChhH-HHHHHHHHH---cCCCEEEEEecCCCCCCC---h-HHHHHHHHhcCCCCCCCCCCCcEEEEecCCCC
Q 001745 572 VVAADDGIRPQT-NEAIAHAKA---AGVPIVIAINKIDKDGAN---P-ERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (1018)
Q Consensus 572 VVDAddGv~~QT-~E~I~~ak~---~gIPIIVVINKiDL~~a~---~-erv~~eL~e~gl~~e~~g~~vpiVeISAktGe 643 (1018)
|+|+++....+. .+++..+.. ..+| |+|+||+|+.... . ..+..+...+. ..+ +++++++||++|.
T Consensus 79 v~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a---~~~--~~~~~e~SAk~g~ 152 (182)
T cd04128 79 MFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYA---KAM--KAPLIFCSTSHSI 152 (182)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHH---HHc--CCEEEEEeCCCCC
Confidence 999988433222 122333332 2455 6789999995311 1 11222211111 111 2679999999999
Q ss_pred ChHHHHHHHHHH
Q 001745 644 KVDDLLETIMLV 655 (1018)
Q Consensus 644 GIdeLleaIl~l 655 (1018)
|++++|++|...
T Consensus 153 ~v~~lf~~l~~~ 164 (182)
T cd04128 153 NVQKIFKIVLAK 164 (182)
T ss_pred CHHHHHHHHHHH
Confidence 999999998753
No 165
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.77 E-value=1.6e-17 Score=166.22 Aligned_cols=154 Identities=21% Similarity=0.275 Sum_probs=112.6
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchH-HHHHhhhccCCEE
Q 001745 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFG-AMRARGARVTDIA 569 (1018)
Q Consensus 491 ~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~-~~r~rg~~~ADiV 569 (1018)
..+|+++|++|+|||||+++|....+..... .|....++...+.+++..+.+.+|||||++.|. .++..+++.+|++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~ 79 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTE--ATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAV 79 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccc--cceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEE
Confidence 4689999999999999999999776654333 344444444555567777899999999999997 5778888999999
Q ss_pred EEEEecCCCCChhHHHH-HHHHHH----cCCCEEEEEecCCCCCCC--hHHHHHHHHhcCCCCCCCCCCCcEEEEecCC-
Q 001745 570 VIVVAADDGIRPQTNEA-IAHAKA----AGVPIVIAINKIDKDGAN--PERVMQELSSIGLMPEDWGGDIPMVQISALK- 641 (1018)
Q Consensus 570 ILVVDAddGv~~QT~E~-I~~ak~----~gIPIIVVINKiDL~~a~--~erv~~eL~e~gl~~e~~g~~vpiVeISAkt- 641 (1018)
|+|+|+++....+.... +..+.. .++|+|+++||+|+.... .......+... + .++|+++||++
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~------~--~~~~~e~Sa~~~ 151 (170)
T cd04115 80 VFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADA------H--SMPLFETSAKDP 151 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHH------c--CCcEEEEeccCC
Confidence 99999998654444332 223332 468999999999985422 22233333322 1 36899999999
Q ss_pred --CCChHHHHHHHHH
Q 001745 642 --GEKVDDLLETIML 654 (1018)
Q Consensus 642 --GeGIdeLleaIl~ 654 (1018)
+.||+++|..+..
T Consensus 152 ~~~~~i~~~f~~l~~ 166 (170)
T cd04115 152 SENDHVEAIFMTLAH 166 (170)
T ss_pred cCCCCHHHHHHHHHH
Confidence 8999999988864
No 166
>PRK15494 era GTPase Era; Provisional
Probab=99.77 E-value=7.5e-18 Score=189.19 Aligned_cols=158 Identities=23% Similarity=0.319 Sum_probs=115.3
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCccc-ccccCCceeeeeeEEEEEecCCceecEEEEeCCCcc-chHHH-------H
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHE-AFGAM-------R 559 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~~v~-~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE-~F~~~-------r 559 (1018)
.+..+|+++|++|+|||||+++|.+.++. .+...++|++.....+. + .+.++.||||||+. .+..+ .
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~--~--~~~qi~~~DTpG~~~~~~~l~~~~~r~~ 125 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIIT--L--KDTQVILYDTPGIFEPKGSLEKAMVRCA 125 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEE--e--CCeEEEEEECCCcCCCcccHHHHHHHHH
Confidence 45568999999999999999999987764 34556778764333332 2 33579999999963 33222 1
Q ss_pred HhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHhcCCCCCCCCCCCcEEEEec
Q 001745 560 ARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISA 639 (1018)
Q Consensus 560 ~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~e~~g~~vpiVeISA 639 (1018)
...+..+|++|+|+|+.+++......++..++..+.|.|+|+||+|+.......+.+.+.... ....+|++||
T Consensus 126 ~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~~~~~~~~~l~~~~-------~~~~i~~iSA 198 (339)
T PRK15494 126 WSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESKYLNDIKAFLTENH-------PDSLLFPISA 198 (339)
T ss_pred HHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccccHHHHHHHHHhcC-------CCcEEEEEec
Confidence 234689999999999988777766677777777788989999999996543333443333221 1357999999
Q ss_pred CCCCChHHHHHHHHHHHH
Q 001745 640 LKGEKVDDLLETIMLVAE 657 (1018)
Q Consensus 640 ktGeGIdeLleaIl~lae 657 (1018)
++|.|+++|+++|...+.
T Consensus 199 ktg~gv~eL~~~L~~~l~ 216 (339)
T PRK15494 199 LSGKNIDGLLEYITSKAK 216 (339)
T ss_pred cCccCHHHHHHHHHHhCC
Confidence 999999999999976543
No 167
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.77 E-value=9.3e-18 Score=167.34 Aligned_cols=153 Identities=23% Similarity=0.326 Sum_probs=108.6
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVIL 571 (1018)
++|+++|.+|+|||||+++|.+..+.....+ ++.+ .+...+.+++....+.+|||||++.|..++..+++.+|++||
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~-t~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vl 78 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDP-TIED--SYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLL 78 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCC-cchh--eEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEE
Confidence 4799999999999999999997766433222 2221 223334456667789999999999999999999999999999
Q ss_pred EEecCCCCChhHH----H-HHHHHHHcCCCEEEEEecCCCCCCCh---HHHHHHHHhcCCCCCCCCCCCcEEEEecCCCC
Q 001745 572 VVAADDGIRPQTN----E-AIAHAKAAGVPIVIAINKIDKDGANP---ERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (1018)
Q Consensus 572 VVDAddGv~~QT~----E-~I~~ak~~gIPIIVVINKiDL~~a~~---erv~~eL~e~gl~~e~~g~~vpiVeISAktGe 643 (1018)
|+|+++....+.. + ..+.....++|+|+++||+|+..... +........ | +.++++++||++|.
T Consensus 79 v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~SA~~~~ 150 (168)
T cd04177 79 VYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQ-------W-GNVPFYETSARKRT 150 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHH-------c-CCceEEEeeCCCCC
Confidence 9999874222221 1 11212234789999999999954221 222222111 2 13689999999999
Q ss_pred ChHHHHHHHHHH
Q 001745 644 KVDDLLETIMLV 655 (1018)
Q Consensus 644 GIdeLleaIl~l 655 (1018)
||+++|++|...
T Consensus 151 ~i~~~f~~i~~~ 162 (168)
T cd04177 151 NVDEVFIDLVRQ 162 (168)
T ss_pred CHHHHHHHHHHH
Confidence 999999999753
No 168
>PLN03118 Rab family protein; Provisional
Probab=99.77 E-value=1.7e-17 Score=172.69 Aligned_cols=155 Identities=19% Similarity=0.192 Sum_probs=110.9
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEE
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiV 569 (1018)
..++|+|+|++|+|||||+++|....+.. . ..|....+....+.+++..+.+.||||||++.|..++..+++.+|++
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~-~--~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 89 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVED-L--APTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGI 89 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCC-c--CCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 45789999999999999999999876531 2 22333333333444566677899999999999999999999999999
Q ss_pred EEEEecCCCCChhHHH-HH-HHHH----HcCCCEEEEEecCCCCCCC---hHHHHHHHHhcCCCCCCCCCCCcEEEEecC
Q 001745 570 VIVVAADDGIRPQTNE-AI-AHAK----AAGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (1018)
Q Consensus 570 ILVVDAddGv~~QT~E-~I-~~ak----~~gIPIIVVINKiDL~~a~---~erv~~eL~e~gl~~e~~g~~vpiVeISAk 640 (1018)
|||+|+++....+... .+ ..+. ..+.|+|+|+||+|+.... .+........+ .++|+++||+
T Consensus 90 vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~---------~~~~~e~SAk 160 (211)
T PLN03118 90 ILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEH---------GCLFLECSAK 160 (211)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHc---------CCEEEEEeCC
Confidence 9999998743333322 12 1122 1357899999999995422 22222222222 2579999999
Q ss_pred CCCChHHHHHHHHHHH
Q 001745 641 KGEKVDDLLETIMLVA 656 (1018)
Q Consensus 641 tGeGIdeLleaIl~la 656 (1018)
+|.|++++|++|....
T Consensus 161 ~~~~v~~l~~~l~~~~ 176 (211)
T PLN03118 161 TRENVEQCFEELALKI 176 (211)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998554
No 169
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.77 E-value=9.9e-18 Score=167.08 Aligned_cols=159 Identities=25% Similarity=0.276 Sum_probs=106.8
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVIL 571 (1018)
.+|+|+|++++|||||+++|.+..+.....+ |.... +...+.+++....+.||||||++.|..++..++..+|++++
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~--t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 78 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVP--TVFEN-YVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 78 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCC--ccccc-eEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEE
Confidence 5799999999999999999998776543322 22211 12234456677789999999999999988888899999999
Q ss_pred EEecCCCCChhHH-H-HHHHHHH--cCCCEEEEEecCCCCCCChHHHHHHHHhcCCCCC---------CCCCCCcEEEEe
Q 001745 572 VVAADDGIRPQTN-E-AIAHAKA--AGVPIVIAINKIDKDGANPERVMQELSSIGLMPE---------DWGGDIPMVQIS 638 (1018)
Q Consensus 572 VVDAddGv~~QT~-E-~I~~ak~--~gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~e---------~~g~~vpiVeIS 638 (1018)
|+|+++....+.. + ++..++. .++|+++++||+|+..... ....+.......- ...+..++++||
T Consensus 79 v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 156 (175)
T cd01870 79 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH--TRRELAKMKQEPVKPEEGRDMANKIGAFGYMECS 156 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChh--hhhhhhhccCCCccHHHHHHHHHHcCCcEEEEec
Confidence 9999863222221 1 2222222 4789999999999854211 1111100000000 000235799999
Q ss_pred cCCCCChHHHHHHHHHH
Q 001745 639 ALKGEKVDDLLETIMLV 655 (1018)
Q Consensus 639 AktGeGIdeLleaIl~l 655 (1018)
|++|.|++++|++|...
T Consensus 157 a~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 157 AKTKEGVREVFEMATRA 173 (175)
T ss_pred cccCcCHHHHHHHHHHH
Confidence 99999999999998754
No 170
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.76 E-value=8.5e-18 Score=182.44 Aligned_cols=153 Identities=20% Similarity=0.290 Sum_probs=108.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCccc-ccccCCceeeeeeEEEEEecCCceecEEEEeCCCccch--------HHHHHhhh
Q 001745 493 VLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAF--------GAMRARGA 563 (1018)
Q Consensus 493 kVaImGhvdvGKTTLLnrL~~~~v~-~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F--------~~~r~rg~ 563 (1018)
.|+++|++|+|||||+|+|.+.++. .+..+++|++... .+.. . .+..+.||||||+... ......++
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~-~i~~--~-~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l 77 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRIS-GIHT--T-GASQIIFIDTPGFHEKKHSLNRLMMKEARSAI 77 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEE-EEEE--c-CCcEEEEEECcCCCCCcchHHHHHHHHHHHHH
Confidence 6899999999999999999988764 5667788886321 2211 2 2356999999996432 11234567
Q ss_pred ccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCC
Q 001745 564 RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (1018)
Q Consensus 564 ~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGe 643 (1018)
..+|++++|+|+++....+ ..++..+...+.|+++|+||+|+.. .......+..+.- +....+++++||++|.
T Consensus 78 ~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~--~~~~~~~~~~~~~----~~~~~~v~~iSA~~g~ 150 (270)
T TIGR00436 78 GGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKF--KDKLLPLIDKYAI----LEDFKDIVPISALTGD 150 (270)
T ss_pred hhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCC--HHHHHHHHHHHHh----hcCCCceEEEecCCCC
Confidence 8999999999999865554 4556666778899999999999952 3333333322211 0111379999999999
Q ss_pred ChHHHHHHHHHHH
Q 001745 644 KVDDLLETIMLVA 656 (1018)
Q Consensus 644 GIdeLleaIl~la 656 (1018)
|+++|+++|....
T Consensus 151 gi~~L~~~l~~~l 163 (270)
T TIGR00436 151 NTSFLAAFIEVHL 163 (270)
T ss_pred CHHHHHHHHHHhC
Confidence 9999999997554
No 171
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.76 E-value=1.3e-17 Score=160.36 Aligned_cols=151 Identities=23% Similarity=0.302 Sum_probs=106.7
Q ss_pred EEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEEEE
Q 001745 494 LTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVV 573 (1018)
Q Consensus 494 VaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVILVV 573 (1018)
|+|+|++|+|||||+++|.+..+.....+ |..+....+. . ....+.+|||||++.|..++..++..+|++++|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~--t~~~~~~~~~--~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 75 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIP--TVGFNMRKVT--K--GNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVV 75 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccC--CCCcceEEEE--E--CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEE
Confidence 79999999999999999998776544433 3333333332 2 2367999999999999999999999999999999
Q ss_pred ecCCCCC-hhHHHHHHHHH----HcCCCEEEEEecCCCCCCCh-HHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCChHH
Q 001745 574 AADDGIR-PQTNEAIAHAK----AAGVPIVIAINKIDKDGANP-ERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDD 647 (1018)
Q Consensus 574 DAddGv~-~QT~E~I~~ak----~~gIPIIVVINKiDL~~a~~-erv~~eL~e~gl~~e~~g~~vpiVeISAktGeGIde 647 (1018)
|+++... .+..+.+..+. ..++|+++++||+|+..... .++...+ ++.. .....++++++||++|.|+++
T Consensus 76 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~Sa~~~~gi~~ 151 (159)
T cd04159 76 DAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQM---NLKS-ITDREVSCYSISCKEKTNIDI 151 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHh---Cccc-ccCCceEEEEEEeccCCChHH
Confidence 9987322 22223333222 25789999999999865432 2222222 2111 112346899999999999999
Q ss_pred HHHHHHH
Q 001745 648 LLETIML 654 (1018)
Q Consensus 648 LleaIl~ 654 (1018)
++++|..
T Consensus 152 l~~~l~~ 158 (159)
T cd04159 152 VLDWLIK 158 (159)
T ss_pred HHHHHhh
Confidence 9999863
No 172
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.76 E-value=1.5e-17 Score=179.09 Aligned_cols=155 Identities=19% Similarity=0.278 Sum_probs=111.3
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVIL 571 (1018)
.+|+++|..|+|||||+++|....+.....+ ++.+ ++...+.+++..+.+.||||+|++.|..++..++..+|++||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~p-Ti~d--~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIl 77 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTP-TIED--FHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFIL 77 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCC-ChhH--hEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence 3799999999999999999998777543332 2222 333344456777889999999999999999888999999999
Q ss_pred EEecCCCCChhHH-HHHHHHH------------HcCCCEEEEEecCCCCC---CChHHHHHHHHhcCCCCCCCCCCCcEE
Q 001745 572 VVAADDGIRPQTN-EAIAHAK------------AAGVPIVIAINKIDKDG---ANPERVMQELSSIGLMPEDWGGDIPMV 635 (1018)
Q Consensus 572 VVDAddGv~~QT~-E~I~~ak------------~~gIPIIVVINKiDL~~---a~~erv~~eL~e~gl~~e~~g~~vpiV 635 (1018)
|||+++....+.. .++..+. ..++|+|+++||+|+.. ...+++.+.+... ..+.++
T Consensus 78 Vfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~--------~~~~~~ 149 (247)
T cd04143 78 VFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGD--------ENCAYF 149 (247)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhc--------CCCEEE
Confidence 9999974322221 1112221 13689999999999953 1233333322211 136799
Q ss_pred EEecCCCCChHHHHHHHHHHHH
Q 001745 636 QISALKGEKVDDLLETIMLVAE 657 (1018)
Q Consensus 636 eISAktGeGIdeLleaIl~lae 657 (1018)
++||++|.||++||++|..++.
T Consensus 150 evSAktg~gI~elf~~L~~~~~ 171 (247)
T cd04143 150 EVSAKKNSNLDEMFRALFSLAK 171 (247)
T ss_pred EEeCCCCCCHHHHHHHHHHHhc
Confidence 9999999999999999987654
No 173
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.76 E-value=1.6e-17 Score=166.83 Aligned_cols=158 Identities=17% Similarity=0.230 Sum_probs=110.3
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVIL 571 (1018)
.+|+++|++|+|||||+++|....+.....+.+. +. +...+.+++..+.+.+|||||++.|..++..++..+|++++
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~-~~--~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 78 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIE-NT--FSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYIL 78 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchh-hh--EEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEE
Confidence 4799999999999999999998776543333221 11 12223345566778999999999999999999999999999
Q ss_pred EEecCCCCChhHHHH-HHHH----HHcCCCEEEEEecCCCCCCC--hHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCC
Q 001745 572 VVAADDGIRPQTNEA-IAHA----KAAGVPIVIAINKIDKDGAN--PERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (1018)
Q Consensus 572 VVDAddGv~~QT~E~-I~~a----k~~gIPIIVVINKiDL~~a~--~erv~~eL~e~gl~~e~~g~~vpiVeISAktGeG 644 (1018)
|+|+++....+.... +..+ ...+.|+|+++||+|+.... .......+.. .+ ..+++++||++|.|
T Consensus 79 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~------~~--~~~~~~~Sa~~~~g 150 (180)
T cd04137 79 VYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAE------SW--GAAFLESSARENEN 150 (180)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHH------Hc--CCeEEEEeCCCCCC
Confidence 999998543333221 1222 22467999999999985321 1111122221 11 25799999999999
Q ss_pred hHHHHHHHHHHHHHhh
Q 001745 645 VDDLLETIMLVAELQE 660 (1018)
Q Consensus 645 IdeLleaIl~lael~~ 660 (1018)
+.+++++|........
T Consensus 151 v~~l~~~l~~~~~~~~ 166 (180)
T cd04137 151 VEEAFELLIEEIEKVE 166 (180)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999987665443
No 174
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.76 E-value=1.7e-17 Score=173.93 Aligned_cols=153 Identities=18% Similarity=0.258 Sum_probs=109.6
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEec-CCceecEEEEeCCCccchHHHHHhhhccCCEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPV-DGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~-dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVI 570 (1018)
++|+|+|.+|+|||||+++|....+..... .|++..++...+.+ ++..+.+.||||||++.|..++..+++.+|++|
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~--~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSD--PTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL 80 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCC--ceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence 689999999999999999999877654333 34444444444443 355678999999999999999999999999999
Q ss_pred EEEecCCCCChhH-HHHHHHHH----HcCCCEEEEEecCCCCCC---ChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCC
Q 001745 571 IVVAADDGIRPQT-NEAIAHAK----AAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (1018)
Q Consensus 571 LVVDAddGv~~QT-~E~I~~ak----~~gIPIIVVINKiDL~~a---~~erv~~eL~e~gl~~e~~g~~vpiVeISAktG 642 (1018)
+|+|+++....+. .+++..+. ....|+|+++||+|+... ..+.. ..+... + .++++++||++|
T Consensus 81 lv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~-~~~~~~------~--~~~~~e~Sak~g 151 (211)
T cd04111 81 LVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEA-EKLAKD------L--GMKYIETSARTG 151 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHH-HHHHHH------h--CCEEEEEeCCCC
Confidence 9999987322111 12222222 234678999999999542 12222 222221 1 267999999999
Q ss_pred CChHHHHHHHHHH
Q 001745 643 EKVDDLLETIMLV 655 (1018)
Q Consensus 643 eGIdeLleaIl~l 655 (1018)
.||+++|++|...
T Consensus 152 ~~v~e~f~~l~~~ 164 (211)
T cd04111 152 DNVEEAFELLTQE 164 (211)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999999754
No 175
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.76 E-value=1.3e-17 Score=167.41 Aligned_cols=153 Identities=24% Similarity=0.255 Sum_probs=107.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEEE
Q 001745 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIV 572 (1018)
Q Consensus 493 kVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVILV 572 (1018)
+|+++|.+++|||||+++|.+. +.. ....|.+..... +.+ .+..+++|||||++.|..++..++..+|++|+|
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~--~~~~t~g~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V 73 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPK--KVAPTVGFTPTK--LRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFV 73 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCc--cccCcccceEEE--EEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEE
Confidence 3899999999999999999865 222 122343332222 222 457899999999999999999999999999999
Q ss_pred EecCCCCChh-HHHHHHHHHH----cCCCEEEEEecCCCCCCC-hHHHHHHHHhcCCCCCCCCCCCcEEEEecCCC----
Q 001745 573 VAADDGIRPQ-TNEAIAHAKA----AGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISALKG---- 642 (1018)
Q Consensus 573 VDAddGv~~Q-T~E~I~~ak~----~gIPIIVVINKiDL~~a~-~erv~~eL~e~gl~~e~~g~~vpiVeISAktG---- 642 (1018)
||+++....+ ....+..+.. .++|+++++||+|+.+.. ..++...+.-..+. ...+..+++++|||++|
T Consensus 74 ~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~-~~~~~~~~~~~~Sa~~g~~~~ 152 (167)
T cd04161 74 VDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLV-NENKSLCHIEPCSAIEGLGKK 152 (167)
T ss_pred EECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCccccc-CCCCceEEEEEeEceeCCCCc
Confidence 9998743222 2333333322 478999999999997654 44454443222221 12233568999999998
Q ss_pred --CChHHHHHHHH
Q 001745 643 --EKVDDLLETIM 653 (1018)
Q Consensus 643 --eGIdeLleaIl 653 (1018)
.||.+.|+||.
T Consensus 153 ~~~g~~~~~~wl~ 165 (167)
T cd04161 153 IDPSIVEGLRWLL 165 (167)
T ss_pred cccCHHHHHHHHh
Confidence 89999999985
No 176
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.76 E-value=1e-17 Score=165.50 Aligned_cols=152 Identities=25% Similarity=0.311 Sum_probs=107.2
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVIL 571 (1018)
.+|+++|.+|+|||||+++|.+..+.....+.+ .+ .+.......+..+.+.||||||++.|...+...+..+|++++
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~ 77 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTV-FD--NYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLI 77 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-ee--eeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEE
Confidence 479999999999999999999887643332222 22 222233445677889999999999998888888899999999
Q ss_pred EEecCCCCChhH--HHHHHHHHH--cCCCEEEEEecCCCCCCChH--------------HHHHHHHhcCCCCCCCCCCCc
Q 001745 572 VVAADDGIRPQT--NEAIAHAKA--AGVPIVIAINKIDKDGANPE--------------RVMQELSSIGLMPEDWGGDIP 633 (1018)
Q Consensus 572 VVDAddGv~~QT--~E~I~~ak~--~gIPIIVVINKiDL~~a~~e--------------rv~~eL~e~gl~~e~~g~~vp 633 (1018)
|+|+++....+. .+++..+.. .++|+++|+||+|+...... .........+ ..+
T Consensus 78 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--------~~~ 149 (171)
T cd00157 78 CFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIG--------AIG 149 (171)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhC--------CeE
Confidence 999987432222 222333332 35999999999999643321 1122222221 237
Q ss_pred EEEEecCCCCChHHHHHHHHH
Q 001745 634 MVQISALKGEKVDDLLETIML 654 (1018)
Q Consensus 634 iVeISAktGeGIdeLleaIl~ 654 (1018)
++++||++|.|+++++++|..
T Consensus 150 ~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 150 YMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred EEEeecCCCCCHHHHHHHHhh
Confidence 999999999999999999863
No 177
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.76 E-value=9.6e-18 Score=172.95 Aligned_cols=157 Identities=25% Similarity=0.275 Sum_probs=108.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEEE
Q 001745 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIV 572 (1018)
Q Consensus 493 kVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVILV 572 (1018)
+|+++|++|+|||||+++|....+.... ..++.+ .+...+.+.+....++||||||++.|..++..++..+|++|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~-~~t~~~--~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv 77 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKY-RRTVEE--MHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALV 77 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccC-CCchhh--heeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEE
Confidence 4899999999999999999987665322 222222 2333344456667899999999999999999999999999999
Q ss_pred EecCCCCChhHH-HHHHHH----HHcCCCEEEEEecCCCCCC-ChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCChH
Q 001745 573 VAADDGIRPQTN-EAIAHA----KAAGVPIVIAINKIDKDGA-NPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVD 646 (1018)
Q Consensus 573 VDAddGv~~QT~-E~I~~a----k~~gIPIIVVINKiDL~~a-~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGeGId 646 (1018)
+|+++....+.. .++..+ ...++|+|+++||+|+... ............. ..| ..+++++||++|.||+
T Consensus 78 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~---~~~--~~~~~~~Sa~~g~gv~ 152 (198)
T cd04147 78 YAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVE---LDW--NCGFVETSAKDNENVL 152 (198)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHH---hhc--CCcEEEecCCCCCCHH
Confidence 999874322221 111222 2247999999999999542 1111111111110 011 3679999999999999
Q ss_pred HHHHHHHHHHH
Q 001745 647 DLLETIMLVAE 657 (1018)
Q Consensus 647 eLleaIl~lae 657 (1018)
++|++|.....
T Consensus 153 ~l~~~l~~~~~ 163 (198)
T cd04147 153 EVFKELLRQAN 163 (198)
T ss_pred HHHHHHHHHhh
Confidence 99999986554
No 178
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.76 E-value=1.6e-17 Score=164.31 Aligned_cols=152 Identities=25% Similarity=0.243 Sum_probs=101.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCcc----c---hHHHHHhhhcc
Q 001745 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHE----A---FGAMRARGARV 565 (1018)
Q Consensus 493 kVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE----~---F~~~r~rg~~~ 565 (1018)
.|+|+|++|+|||||+++|.+........+++|++.....+.. ++ ...++||||||+. . +.....+.+..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~--~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 78 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRV--DD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIER 78 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEc--CC-CCeEEEEecCcccCcccccCCchHHHHHHHHh
Confidence 5899999999999999999976655555556666544333332 22 2379999999963 2 22223344567
Q ss_pred CCEEEEEEecCCC-CChhH-HHHHHHHHH-----cCCCEEEEEecCCCCCCCh-HHHHHHHHhcCCCCCCCCCCCcEEEE
Q 001745 566 TDIAVIVVAADDG-IRPQT-NEAIAHAKA-----AGVPIVIAINKIDKDGANP-ERVMQELSSIGLMPEDWGGDIPMVQI 637 (1018)
Q Consensus 566 ADiVILVVDAddG-v~~QT-~E~I~~ak~-----~gIPIIVVINKiDL~~a~~-erv~~eL~e~gl~~e~~g~~vpiVeI 637 (1018)
+|++++|+|+++. -..+. ..+++.+.. .++|+++|+||+|+..... .+....+.... ...+++++
T Consensus 79 ~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~ 151 (170)
T cd01898 79 TRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKEL-------WGKPVFPI 151 (170)
T ss_pred CCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhC-------CCCCEEEE
Confidence 9999999999986 22222 223333332 3689999999999854322 22222222111 13679999
Q ss_pred ecCCCCChHHHHHHHHH
Q 001745 638 SALKGEKVDDLLETIML 654 (1018)
Q Consensus 638 SAktGeGIdeLleaIl~ 654 (1018)
||++|.|+++++++|..
T Consensus 152 Sa~~~~gi~~l~~~i~~ 168 (170)
T cd01898 152 SALTGEGLDELLRKLAE 168 (170)
T ss_pred ecCCCCCHHHHHHHHHh
Confidence 99999999999999864
No 179
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.75 E-value=2.3e-17 Score=168.63 Aligned_cols=155 Identities=19% Similarity=0.194 Sum_probs=106.9
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCE
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADi 568 (1018)
....+|+++|++++|||||++++....+.. .. .|.+.....+. ...+.+.||||||++.|..++..++..+|+
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~--~T~~~~~~~~~----~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~ 87 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TI--PTIGFNVETVE----YKNLKFTMWDVGGQDKLRPLWRHYYQNTNG 87 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cC--CccccceEEEE----ECCEEEEEEECCCCHhHHHHHHHHhcCCCE
Confidence 345789999999999999999997655542 22 24443333322 245789999999999999999999999999
Q ss_pred EEEEEecCCCCC-hhHHHHHHHH-H---HcCCCEEEEEecCCCCCCC-hHHHHHHHHhcCCCCCCCCCCCcEEEEecCCC
Q 001745 569 AVIVVAADDGIR-PQTNEAIAHA-K---AAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (1018)
Q Consensus 569 VILVVDAddGv~-~QT~E~I~~a-k---~~gIPIIVVINKiDL~~a~-~erv~~eL~e~gl~~e~~g~~vpiVeISAktG 642 (1018)
+|+|+|+++.-. ....+.+... . ..+.|+||++||+|+.... ..++...+ ++.. .....+.++++||++|
T Consensus 88 iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l---~~~~-~~~~~~~~~~~Sa~tg 163 (182)
T PTZ00133 88 LIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKL---GLHS-VRQRNWYIQGCCATTA 163 (182)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHh---CCCc-ccCCcEEEEeeeCCCC
Confidence 999999986321 1112222222 2 1368999999999996533 23332222 2210 1112356789999999
Q ss_pred CChHHHHHHHHH
Q 001745 643 EKVDDLLETIML 654 (1018)
Q Consensus 643 eGIdeLleaIl~ 654 (1018)
.|++++|++|..
T Consensus 164 ~gv~e~~~~l~~ 175 (182)
T PTZ00133 164 QGLYEGLDWLSA 175 (182)
T ss_pred CCHHHHHHHHHH
Confidence 999999999974
No 180
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.75 E-value=1.1e-17 Score=169.15 Aligned_cols=147 Identities=23% Similarity=0.342 Sum_probs=106.4
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccch------HHHHHhhh--
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAF------GAMRARGA-- 563 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F------~~~r~rg~-- 563 (1018)
++|+++|.||+|||||+|+|++.+...+..+|+|.+.....+.+ .+..+.|+||||...+ ..+...++
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~----~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~ 76 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKL----GDQQVELVDLPGIYSLSSKSEEERVARDYLLS 76 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEE----TTEEEEEEE----SSSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEe----cCceEEEEECCCcccCCCCCcHHHHHHHHHhh
Confidence 37999999999999999999999988899999999876666554 2367999999994222 22233333
Q ss_pred ccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCCh-HHHHHHHHhcCCCCCCCCCCCcEEEEecCCC
Q 001745 564 RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANP-ERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (1018)
Q Consensus 564 ~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~-erv~~eL~e~gl~~e~~g~~vpiVeISAktG 642 (1018)
...|++|+|+|++. ..+..+...++...++|+|+|+||+|+....- .--...+.+. + .+|++++||++|
T Consensus 77 ~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~-L-------g~pvi~~sa~~~ 146 (156)
T PF02421_consen 77 EKPDLIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSER-L-------GVPVIPVSARTG 146 (156)
T ss_dssp TSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHH-H-------TS-EEEEBTTTT
T ss_pred cCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHH-h-------CCCEEEEEeCCC
Confidence 68999999999986 35566777888889999999999999832110 0011222221 0 378999999999
Q ss_pred CChHHHHHHH
Q 001745 643 EKVDDLLETI 652 (1018)
Q Consensus 643 eGIdeLleaI 652 (1018)
+|+++|+++|
T Consensus 147 ~g~~~L~~~I 156 (156)
T PF02421_consen 147 EGIDELKDAI 156 (156)
T ss_dssp BTHHHHHHHH
T ss_pred cCHHHHHhhC
Confidence 9999999876
No 181
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.75 E-value=9.7e-18 Score=167.17 Aligned_cols=153 Identities=16% Similarity=0.163 Sum_probs=106.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEEE
Q 001745 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIV 572 (1018)
Q Consensus 493 kVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVILV 572 (1018)
+|+++|+.|+|||||+++|....+... .+.++. .+.+...+++..+.+.+|||||++.|...+...+..+|+++||
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv 77 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPEN-VPRVLP---EITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLV 77 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcc-CCCccc---ceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEE
Confidence 799999999999999999998776433 222221 1233333456678899999999998888888888999999999
Q ss_pred EecCCCCChhHH--HHHHHHHH--cCCCEEEEEecCCCCCCChH----HHHHHHHhcCCCCCCCCCCCcEEEEecCCCCC
Q 001745 573 VAADDGIRPQTN--EAIAHAKA--AGVPIVIAINKIDKDGANPE----RVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (1018)
Q Consensus 573 VDAddGv~~QT~--E~I~~ak~--~gIPIIVVINKiDL~~a~~e----rv~~eL~e~gl~~e~~g~~vpiVeISAktGeG 644 (1018)
+|+++....+.. .++..++. .++|+++|+||+|+.+.... .....+... +....+++++||++|.|
T Consensus 78 ~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~------~~~~~~~~e~Sa~~~~~ 151 (166)
T cd01893 78 YSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNE------FREIETCVECSAKTLIN 151 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHH------HhcccEEEEeccccccC
Confidence 999875443332 12233332 37899999999999653321 111111110 11113699999999999
Q ss_pred hHHHHHHHHHH
Q 001745 645 VDDLLETIMLV 655 (1018)
Q Consensus 645 IdeLleaIl~l 655 (1018)
++++|+.+...
T Consensus 152 v~~lf~~~~~~ 162 (166)
T cd01893 152 VSEVFYYAQKA 162 (166)
T ss_pred HHHHHHHHHHH
Confidence 99999988654
No 182
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.75 E-value=2.1e-17 Score=171.81 Aligned_cols=156 Identities=19% Similarity=0.237 Sum_probs=105.6
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchH--------HHHHhhh
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFG--------AMRARGA 563 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~--------~~r~rg~ 563 (1018)
.+|+|+|.+|+|||||+++|.+..+.....+.++. ..+...+.+++..+.+.||||||++.|. ..+...+
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~--~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~ 78 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHR--RLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGL 78 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCcccc--ccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhh
Confidence 37999999999999999999987775544333332 3333334456777889999999976542 1234557
Q ss_pred ccCCEEEEEEecCCCCChhHHH-HHHHHH------HcCCCEEEEEecCCCCCCC--hHHHHHHHHhcCCCCCCCCCCCcE
Q 001745 564 RVTDIAVIVVAADDGIRPQTNE-AIAHAK------AAGVPIVIAINKIDKDGAN--PERVMQELSSIGLMPEDWGGDIPM 634 (1018)
Q Consensus 564 ~~ADiVILVVDAddGv~~QT~E-~I~~ak------~~gIPIIVVINKiDL~~a~--~erv~~eL~e~gl~~e~~g~~vpi 634 (1018)
..+|++|||||+++....+... ++..+. ..++|+|+|+||+|+.... ..+..+.+... .+ .++|
T Consensus 79 ~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~-----~~--~~~~ 151 (198)
T cd04142 79 RNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRK-----SW--KCGY 151 (198)
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHH-----hc--CCcE
Confidence 8999999999998743332222 122221 2468999999999995421 11112222111 11 3789
Q ss_pred EEEecCCCCChHHHHHHHHHHH
Q 001745 635 VQISALKGEKVDDLLETIMLVA 656 (1018)
Q Consensus 635 VeISAktGeGIdeLleaIl~la 656 (1018)
+++||++|.||++||+.++...
T Consensus 152 ~e~Sak~g~~v~~lf~~i~~~~ 173 (198)
T cd04142 152 LECSAKYNWHILLLFKELLISA 173 (198)
T ss_pred EEecCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999987543
No 183
>PLN03110 Rab GTPase; Provisional
Probab=99.75 E-value=3.2e-17 Score=172.25 Aligned_cols=156 Identities=21% Similarity=0.253 Sum_probs=115.7
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEE
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiV 569 (1018)
...+|+++|+.++|||||+++|.+..+..... .|..+.+....+.+++..+.+.||||||++.|..++..+++.+|++
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~--~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ 88 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESK--STIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCC--CceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence 34689999999999999999999877654433 3544455445555677778999999999999999999999999999
Q ss_pred EEEEecCCCCChhHH-HHHHHHHH---cCCCEEEEEecCCCCCCC--hHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCC
Q 001745 570 VIVVAADDGIRPQTN-EAIAHAKA---AGVPIVIAINKIDKDGAN--PERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (1018)
Q Consensus 570 ILVVDAddGv~~QT~-E~I~~ak~---~gIPIIVVINKiDL~~a~--~erv~~eL~e~gl~~e~~g~~vpiVeISAktGe 643 (1018)
|||+|+++....+.. .++..+.. .++|+|+++||+|+.... ..+....+... ..++++++||++|.
T Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~--------~~~~~~e~SA~~g~ 160 (216)
T PLN03110 89 LLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEK--------EGLSFLETSALEAT 160 (216)
T ss_pred EEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHH--------cCCEEEEEeCCCCC
Confidence 999999875433332 22333332 478999999999985321 12223333321 13689999999999
Q ss_pred ChHHHHHHHHHH
Q 001745 644 KVDDLLETIMLV 655 (1018)
Q Consensus 644 GIdeLleaIl~l 655 (1018)
|++++|++|+..
T Consensus 161 ~v~~lf~~l~~~ 172 (216)
T PLN03110 161 NVEKAFQTILLE 172 (216)
T ss_pred CHHHHHHHHHHH
Confidence 999999999754
No 184
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.75 E-value=1.6e-17 Score=164.70 Aligned_cols=150 Identities=20% Similarity=0.253 Sum_probs=103.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccc-hHHHHHhhhccCCEEEE
Q 001745 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA-FGAMRARGARVTDIAVI 571 (1018)
Q Consensus 493 kVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~-F~~~r~rg~~~ADiVIL 571 (1018)
+|+++|++|+|||||++++....+.... ..++... +...+.+++....+.||||||++. +..+..++++.+|++|+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~-~~t~~~~--~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 77 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEY-DPNLESL--YSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVL 77 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcccccc-CCChHHh--ceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEE
Confidence 4899999999999999999876553322 2222222 233344567777899999999985 45567788899999999
Q ss_pred EEecCCCCChhH----HHHHHHHH--HcCCCEEEEEecCCCCCC---ChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCC
Q 001745 572 VVAADDGIRPQT----NEAIAHAK--AAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (1018)
Q Consensus 572 VVDAddGv~~QT----~E~I~~ak--~~gIPIIVVINKiDL~~a---~~erv~~eL~e~gl~~e~~g~~vpiVeISAktG 642 (1018)
|+|+++....+. ...+.... ..++|+|+|+||+|+... ..+......... .++|+++||++|
T Consensus 78 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~---------~~~~~e~Sa~~~ 148 (165)
T cd04146 78 VYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASEL---------GCLFFEVSAAED 148 (165)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHc---------CCEEEEeCCCCC
Confidence 999988533222 22222222 237999999999998432 222222222222 257999999999
Q ss_pred -CChHHHHHHHHH
Q 001745 643 -EKVDDLLETIML 654 (1018)
Q Consensus 643 -eGIdeLleaIl~ 654 (1018)
.||+++|+.|..
T Consensus 149 ~~~v~~~f~~l~~ 161 (165)
T cd04146 149 YDGVHSVFHELCR 161 (165)
T ss_pred chhHHHHHHHHHH
Confidence 599999999874
No 185
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.75 E-value=2.6e-17 Score=192.18 Aligned_cols=153 Identities=25% Similarity=0.426 Sum_probs=117.2
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCcc-cccccCCceeeeeeEEEEEecCCceecEEEEeCCCccc--------hHHHH
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA--------FGAMR 559 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~~v-~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~--------F~~~r 559 (1018)
...++|+|+|.+|+|||||+++|.+... .....+|+|++...+.+.+ . +..+.||||||++. |...+
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~--~--~~~~~l~DT~G~~~~~~~~~~~~~~~~ 111 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEW--N--GRRFTVVDTGGWEPDAKGLQASVAEQA 111 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEE--C--CcEEEEEeCCCcCCcchhHHHHHHHHH
Confidence 3558999999999999999999998764 3566778888765554433 3 35699999999763 44445
Q ss_pred HhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHhcCCCCCCCCCCCcEEEEec
Q 001745 560 ARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISA 639 (1018)
Q Consensus 560 ~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~e~~g~~vpiVeISA 639 (1018)
..++..+|++|||||++++......+++..++..++|+|+|+||+|+.....+ ..++...++ . ..++|||
T Consensus 112 ~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~~--~~~~~~~g~-------~-~~~~iSA 181 (472)
T PRK03003 112 EVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEAD--AAALWSLGL-------G-EPHPVSA 181 (472)
T ss_pred HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccchh--hHHHHhcCC-------C-CeEEEEc
Confidence 56788999999999999998887778888888889999999999999643221 122222232 1 2479999
Q ss_pred CCCCChHHHHHHHHHH
Q 001745 640 LKGEKVDDLLETIMLV 655 (1018)
Q Consensus 640 ktGeGIdeLleaIl~l 655 (1018)
++|.||++|+++|...
T Consensus 182 ~~g~gi~eL~~~i~~~ 197 (472)
T PRK03003 182 LHGRGVGDLLDAVLAA 197 (472)
T ss_pred CCCCCcHHHHHHHHhh
Confidence 9999999999999754
No 186
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.75 E-value=2.3e-17 Score=168.43 Aligned_cols=158 Identities=18% Similarity=0.162 Sum_probs=111.8
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCE
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADi 568 (1018)
.+.++|+++|.+|+|||||+++|....+... ..|++.....+.. .+..+.+|||||++.+..++..++..+|+
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~---~~t~~~~~~~~~~----~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ 87 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQH---QPTQHPTSEELAI----GNIKFTTFDLGGHQQARRLWKDYFPEVNG 87 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCccc---CCccccceEEEEE----CCEEEEEEECCCCHHHHHHHHHHhCCCCE
Confidence 5668999999999999999999997665321 2344443333332 34679999999999999999999999999
Q ss_pred EEEEEecCCCCC-hhHHHHHHHH----HHcCCCEEEEEecCCCCCC-ChHHHHHHHHhcCCCC---CCCCCCCcEEEEec
Q 001745 569 AVIVVAADDGIR-PQTNEAIAHA----KAAGVPIVIAINKIDKDGA-NPERVMQELSSIGLMP---EDWGGDIPMVQISA 639 (1018)
Q Consensus 569 VILVVDAddGv~-~QT~E~I~~a----k~~gIPIIVVINKiDL~~a-~~erv~~eL~e~gl~~---e~~g~~vpiVeISA 639 (1018)
+|+|+|+++... ....+.+..+ ...++|+++++||+|++.. +.+++...+.-..... ........+++|||
T Consensus 88 ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa 167 (184)
T smart00178 88 IVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV 167 (184)
T ss_pred EEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence 999999987421 1122222222 2257899999999999653 4555554442211110 01113467999999
Q ss_pred CCCCChHHHHHHHH
Q 001745 640 LKGEKVDDLLETIM 653 (1018)
Q Consensus 640 ktGeGIdeLleaIl 653 (1018)
++|+|+++++++|.
T Consensus 168 ~~~~g~~~~~~wl~ 181 (184)
T smart00178 168 VRRMGYGEGFKWLS 181 (184)
T ss_pred ccCCChHHHHHHHH
Confidence 99999999999996
No 187
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.75 E-value=1.7e-17 Score=165.02 Aligned_cols=154 Identities=25% Similarity=0.281 Sum_probs=106.8
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEE
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiV 569 (1018)
+.++|+|+|++|+|||||+++|.+..+.. ...|.++....+.. + +..+.+|||||+..|..++..+++.+|++
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~---~~~t~g~~~~~i~~--~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~i 85 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISH---ITPTQGFNIKTVQS--D--GFKLNVWDIGGQRAIRPYWRNYFENTDCL 85 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCcc---cCCCCCcceEEEEE--C--CEEEEEEECCCCHHHHHHHHHHhcCCCEE
Confidence 46889999999999999999998765432 12344333333332 3 36799999999999999999999999999
Q ss_pred EEEEecCCCCC-hhHHHHH----HHHHHcCCCEEEEEecCCCCCCC-hHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCC
Q 001745 570 VIVVAADDGIR-PQTNEAI----AHAKAAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (1018)
Q Consensus 570 ILVVDAddGv~-~QT~E~I----~~ak~~gIPIIVVINKiDL~~a~-~erv~~eL~e~gl~~e~~g~~vpiVeISAktGe 643 (1018)
++|+|+.+... ......+ ......++|+++++||+|+.... .+.+...+ ++.. ......+++++||++|+
T Consensus 86 i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l---~~~~-~~~~~~~~~~~Sa~~~~ 161 (173)
T cd04155 86 IYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEAL---NLHD-LRDRTWHIQACSAKTGE 161 (173)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHc---CCcc-cCCCeEEEEEeECCCCC
Confidence 99999986321 1112222 22233579999999999996433 33333332 2211 11123468899999999
Q ss_pred ChHHHHHHHHH
Q 001745 644 KVDDLLETIML 654 (1018)
Q Consensus 644 GIdeLleaIl~ 654 (1018)
|++++|++|..
T Consensus 162 gi~~~~~~l~~ 172 (173)
T cd04155 162 GLQEGMNWVCK 172 (173)
T ss_pred CHHHHHHHHhc
Confidence 99999999863
No 188
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.75 E-value=2.5e-17 Score=189.36 Aligned_cols=161 Identities=29% Similarity=0.400 Sum_probs=121.2
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCc-ccccccCCceeeeeeEEEEEecCCceecEEEEeCCCcc----------chHH
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKTK-VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHE----------AFGA 557 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~~-v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE----------~F~~ 557 (1018)
...++|+|+|++|+|||||+++|++.. ....+.+|+|++.....+. + .+..+.||||||+. .|..
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~--~--~~~~~~lvDT~G~~~~~~~~~~~e~~~~ 246 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFE--R--DGQKYTLIDTAGIRRKGKVTEGVEKYSV 246 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEE--E--CCeeEEEEECCCCCCCcchhhHHHHHHH
Confidence 357899999999999999999999654 4567778888874333322 2 34568999999953 3333
Q ss_pred HH-HhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCC-hHHHHHHHHhcCCCCCCCCCCCcEE
Q 001745 558 MR-ARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMV 635 (1018)
Q Consensus 558 ~r-~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~-~erv~~eL~e~gl~~e~~g~~vpiV 635 (1018)
++ .+++..+|++|+|+|+.++...|+...+.++...+.|+|+++||+|+.... ..++...+... +. +...++++
T Consensus 247 ~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~-l~---~~~~~~i~ 322 (435)
T PRK00093 247 IRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVDEKTMEEFKKELRRR-LP---FLDYAPIV 322 (435)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCCHHHHHHHHHHHHHh-cc---cccCCCEE
Confidence 33 346789999999999999999999999999988899999999999996321 22333333321 11 11347999
Q ss_pred EEecCCCCChHHHHHHHHHHHH
Q 001745 636 QISALKGEKVDDLLETIMLVAE 657 (1018)
Q Consensus 636 eISAktGeGIdeLleaIl~lae 657 (1018)
++||++|.||+++++.+..+.+
T Consensus 323 ~~SA~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 323 FISALTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred EEeCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999876543
No 189
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.75 E-value=4.3e-17 Score=173.29 Aligned_cols=159 Identities=19% Similarity=0.247 Sum_probs=109.9
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVIL 571 (1018)
.+|+|+|+.++|||||+.+|....+...+.+ |... .|...+.+++..+.+.||||+|++.|..++..++..+|++||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~p--Ti~~-~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~ill 78 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVP--TVFE-NYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLI 78 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCC--cccc-ceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEE
Confidence 5799999999999999999998777544433 3322 233455567888899999999999999999999999999999
Q ss_pred EEecCCCCChhHH-HHH-HHHH--HcCCCEEEEEecCCCCCCChHHHHHHHHhcCCCC---------CCCCCCCcEEEEe
Q 001745 572 VVAADDGIRPQTN-EAI-AHAK--AAGVPIVIAINKIDKDGANPERVMQELSSIGLMP---------EDWGGDIPMVQIS 638 (1018)
Q Consensus 572 VVDAddGv~~QT~-E~I-~~ak--~~gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~---------e~~g~~vpiVeIS 638 (1018)
|||+++....+.. ..+ ..+. ..++|+|+|+||+|+.... .....+.+....+ ....+.++|++||
T Consensus 79 vfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~--~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~S 156 (222)
T cd04173 79 CFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDL--ATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECS 156 (222)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccch--hhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcC
Confidence 9999984322221 111 1121 2478999999999995421 1111111111000 0001235899999
Q ss_pred cCCCCC-hHHHHHHHHHH
Q 001745 639 ALKGEK-VDDLLETIMLV 655 (1018)
Q Consensus 639 AktGeG-IdeLleaIl~l 655 (1018)
|+++.| |+++|+.....
T Consensus 157 Ak~~~~~V~~~F~~~~~~ 174 (222)
T cd04173 157 SRSSERSVRDVFHVATVA 174 (222)
T ss_pred CCcCCcCHHHHHHHHHHH
Confidence 999985 99999988764
No 190
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=1.1e-17 Score=171.10 Aligned_cols=153 Identities=21% Similarity=0.194 Sum_probs=122.1
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEE
Q 001745 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (1018)
Q Consensus 491 ~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVI 570 (1018)
.+++.+||+.|+|||+||.+++..+|..... .|.++.+..-.+.++++.+++++|||+|||.|...+..+++.|-++|
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd--~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal 83 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHD--LTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL 83 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCcccccc--ceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence 3689999999999999999999988875544 56666665556667899999999999999999999999999999999
Q ss_pred EEEecCCCCC----hhHHHHHHHHHHcCCCEEEEEecCCCCC---CChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCC
Q 001745 571 IVVAADDGIR----PQTNEAIAHAKAAGVPIVIAINKIDKDG---ANPERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (1018)
Q Consensus 571 LVVDAddGv~----~QT~E~I~~ak~~gIPIIVVINKiDL~~---a~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGe 643 (1018)
||||++..-. .+|.+-+++....|.-+++++||+||.. .+.++-.....++++ .++++||++++
T Consensus 84 LVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgL---------ifmETSakt~~ 154 (216)
T KOG0098|consen 84 LVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGL---------IFMETSAKTAE 154 (216)
T ss_pred EEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCc---------eeehhhhhhhh
Confidence 9999987432 2333333444445777999999999953 345555666666765 57899999999
Q ss_pred ChHHHHHHHHH
Q 001745 644 KVDDLLETIML 654 (1018)
Q Consensus 644 GIdeLleaIl~ 654 (1018)
||++.|..+..
T Consensus 155 ~VEEaF~nta~ 165 (216)
T KOG0098|consen 155 NVEEAFINTAK 165 (216)
T ss_pred hHHHHHHHHHH
Confidence 99999988764
No 191
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.74 E-value=3e-17 Score=174.18 Aligned_cols=158 Identities=19% Similarity=0.194 Sum_probs=109.0
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVIL 571 (1018)
.+|+|+|.+++|||||+++|....+.. . ..|....++...+ ..+.+.||||||++.|..++..+++.+|++|+
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~--~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~Il 73 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-T--VSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVIL 73 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-C--CCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEE
Confidence 379999999999999999999887752 2 2344443333322 35679999999999999999999999999999
Q ss_pred EEecCCCCChhHH-HHHHHHH---HcCCCEEEEEecCCCCCC----------------------ChHHHHHHHHhcCCC-
Q 001745 572 VVAADDGIRPQTN-EAIAHAK---AAGVPIVIAINKIDKDGA----------------------NPERVMQELSSIGLM- 624 (1018)
Q Consensus 572 VVDAddGv~~QT~-E~I~~ak---~~gIPIIVVINKiDL~~a----------------------~~erv~~eL~e~gl~- 624 (1018)
|||+++....+.. +.+..+. ..++|+|+|+||+|+... ..++......+.+..
T Consensus 74 V~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~ 153 (220)
T cd04126 74 TYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYK 153 (220)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccc
Confidence 9999984333222 2222222 246899999999999541 112222222222200
Q ss_pred --CCCC--CCCCcEEEEecCCCCChHHHHHHHHHHH
Q 001745 625 --PEDW--GGDIPMVQISALKGEKVDDLLETIMLVA 656 (1018)
Q Consensus 625 --~e~~--g~~vpiVeISAktGeGIdeLleaIl~la 656 (1018)
-++. ...++|+++||++|.||+++|+.|+...
T Consensus 154 ~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~ 189 (220)
T cd04126 154 MLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLV 189 (220)
T ss_pred cccccccccccceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 0000 1236899999999999999999998543
No 192
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.74 E-value=3e-17 Score=159.49 Aligned_cols=150 Identities=22% Similarity=0.288 Sum_probs=107.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEEE
Q 001745 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIV 572 (1018)
Q Consensus 493 kVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVILV 572 (1018)
+|+|+|++|+|||||+++|....+.... ..++.+ .+...+.+.+..+.+.+|||||++.|..++...+..+|++++|
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 77 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEY-DPTIED--SYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILV 77 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCc-CCChhH--eEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEE
Confidence 4899999999999999999977643332 233332 3333344455567899999999999999999999999999999
Q ss_pred EecCCCCCh-hHHHHHHHHHH----cCCCEEEEEecCCCCCC---ChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCC
Q 001745 573 VAADDGIRP-QTNEAIAHAKA----AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (1018)
Q Consensus 573 VDAddGv~~-QT~E~I~~ak~----~gIPIIVVINKiDL~~a---~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGeG 644 (1018)
+|.++.... +....+..+.. .++|+++++||+|+... ..+.+.......+ ++++++||++|.|
T Consensus 78 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~S~~~~~~ 148 (160)
T cd00876 78 YSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWG---------CPFIETSAKDNIN 148 (160)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcC---------CcEEEeccCCCCC
Confidence 999873211 11222222221 36899999999999642 2223333333222 6799999999999
Q ss_pred hHHHHHHHHH
Q 001745 645 VDDLLETIML 654 (1018)
Q Consensus 645 IdeLleaIl~ 654 (1018)
+++++++|..
T Consensus 149 i~~l~~~l~~ 158 (160)
T cd00876 149 IDEVFKLLVR 158 (160)
T ss_pred HHHHHHHHHh
Confidence 9999999864
No 193
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.74 E-value=6.1e-17 Score=153.78 Aligned_cols=151 Identities=28% Similarity=0.377 Sum_probs=108.5
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVIL 571 (1018)
++|+++|++|+|||||+++|....+......++|.+.....+. +++..+.+.+||||||..|..++......++.+++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 79 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIE--EDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLR 79 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEE--ECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEE
Confidence 6899999999999999999998876666666777665444343 34444789999999999998888877788888888
Q ss_pred EEecCCC-------CChhHHHHHHHHHHcCCCEEEEEecCCCCCCChH-HHHHHHHhcCCCCCCCCCCCcEEEEecCCCC
Q 001745 572 VVAADDG-------IRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPE-RVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (1018)
Q Consensus 572 VVDAddG-------v~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~e-rv~~eL~e~gl~~e~~g~~vpiVeISAktGe 643 (1018)
++|.... ...+.......+.. +.|+++++||+|+...... .....+...+ ..+++++||++|.
T Consensus 80 ~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--------~~~~~~~sa~~~~ 150 (161)
T TIGR00231 80 VFDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDAKLKTHVAFLFAKLN--------GEPIIPLSAETGK 150 (161)
T ss_pred EEEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcchhhHHHHHHHhhcc--------CCceEEeecCCCC
Confidence 8877653 12223333333332 8899999999999653322 2222222221 2569999999999
Q ss_pred ChHHHHHHHH
Q 001745 644 KVDDLLETIM 653 (1018)
Q Consensus 644 GIdeLleaIl 653 (1018)
|+.+++++|.
T Consensus 151 gv~~~~~~l~ 160 (161)
T TIGR00231 151 NIDSAFKIVE 160 (161)
T ss_pred CHHHHHHHhh
Confidence 9999999873
No 194
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.74 E-value=2.3e-17 Score=180.06 Aligned_cols=139 Identities=31% Similarity=0.344 Sum_probs=110.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcc------------------cccccCCceeeeeeEEEEEecCCceecEEEEeCCCccc
Q 001745 493 VLTIMGHVDHGKTTLLDHIRKTKV------------------AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA 554 (1018)
Q Consensus 493 kVaImGhvdvGKTTLLnrL~~~~v------------------~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~ 554 (1018)
+|+|+||+|||||||+++|..... ......|+|++.....+.+ .++.++|||||||..
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~----~~~~i~liDTPG~~d 76 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW----KDHRINIIDTPGHVD 76 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE----CCEEEEEEECCCcHH
Confidence 489999999999999999963211 1123457777655555443 457899999999999
Q ss_pred hHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHhc-CCCCCCCCCCCc
Q 001745 555 FGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-GLMPEDWGGDIP 633 (1018)
Q Consensus 555 F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e~-gl~~e~~g~~vp 633 (1018)
|...+.++++.+|++|+|+|+.+++..++.+++..+...++|+|+++||+|+.+++.+++..++.+. +.. .-..
T Consensus 77 f~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~-----~~~~ 151 (270)
T cd01886 77 FTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGADFFRVVEQIREKLGAN-----PVPL 151 (270)
T ss_pred HHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCC-----ceEE
Confidence 9999999999999999999999999999999999999999999999999999887877777766653 211 1134
Q ss_pred EEEEecC
Q 001745 634 MVQISAL 640 (1018)
Q Consensus 634 iVeISAk 640 (1018)
++|+||.
T Consensus 152 ~~Pisa~ 158 (270)
T cd01886 152 QLPIGEE 158 (270)
T ss_pred EeccccC
Confidence 6788876
No 195
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.74 E-value=2.2e-17 Score=165.43 Aligned_cols=151 Identities=20% Similarity=0.240 Sum_probs=106.3
Q ss_pred EEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEEEE
Q 001745 494 LTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVV 573 (1018)
Q Consensus 494 VaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVILVV 573 (1018)
|+++|+.|+|||||+++|....+..... .|.+... ..+ ++....+.||||||++.|..++..+++.+|++|+||
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~--pt~g~~~--~~i--~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~ 75 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVV--PTTGFNS--VAI--PTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVV 75 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCccccc--ccCCcce--EEE--eeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 7899999999999999999776543322 3433322 222 345678999999999999999999999999999999
Q ss_pred ecCCCCCh-hHHHHHHHHH--HcCCCEEEEEecCCCCCCC-hHHHHHHHHhcCCCCCCCCCCCcEEEEecCC------CC
Q 001745 574 AADDGIRP-QTNEAIAHAK--AAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISALK------GE 643 (1018)
Q Consensus 574 DAddGv~~-QT~E~I~~ak--~~gIPIIVVINKiDL~~a~-~erv~~eL~e~gl~~e~~g~~vpiVeISAkt------Ge 643 (1018)
|+++.... ...+.+..+. ..++|+++|+||+|+.... ...+...+....+.. . ..+.++++||++ ++
T Consensus 76 D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~-~--~~~~~~~~Sa~~~~s~~~~~ 152 (164)
T cd04162 76 DSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIAR-G--RRWILQGTSLDDDGSPSRME 152 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcC-C--CceEEEEeeecCCCChhHHH
Confidence 99874321 2222333332 2579999999999996543 233332222222211 1 246789999998 99
Q ss_pred ChHHHHHHHH
Q 001745 644 KVDDLLETIM 653 (1018)
Q Consensus 644 GIdeLleaIl 653 (1018)
||.++|+.++
T Consensus 153 ~v~~~~~~~~ 162 (164)
T cd04162 153 AVKDLLSQLI 162 (164)
T ss_pred HHHHHHHHHh
Confidence 9999999875
No 196
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.74 E-value=3.1e-17 Score=166.45 Aligned_cols=148 Identities=20% Similarity=0.338 Sum_probs=107.4
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCcc--cccccCCceeeeeeEEEEEecCCceecEEEEeCCCc----------cchH
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKV--AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH----------EAFG 556 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~~v--~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGH----------E~F~ 556 (1018)
.+.++|+|+|++|+|||||+++|.+..+ ......+.|+++.++.+ + ..+.||||||+ +.|.
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~----~---~~~~liDtpG~~~~~~~~~~~~~~~ 88 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV----N---DGFRLVDLPGYGYAKVSKEEKEKWQ 88 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe----C---CcEEEEeCCCCccccCChhHHHHHH
Confidence 5778999999999999999999998652 23445677877665443 2 25999999995 3344
Q ss_pred HHHHhhhc---cCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCC-hHHHHHHHHhcCCCCCCCCCCC
Q 001745 557 AMRARGAR---VTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDI 632 (1018)
Q Consensus 557 ~~r~rg~~---~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~-~erv~~eL~e~gl~~e~~g~~v 632 (1018)
.+...++. .+|++++|+|++.++..++.+.++.+...++|+++++||+|+.... .+....++... + ...+...
T Consensus 89 ~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~-l--~~~~~~~ 165 (179)
T TIGR03598 89 KLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKA-L--KKDADDP 165 (179)
T ss_pred HHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHH-H--hhccCCC
Confidence 44444443 4689999999999999888888888888899999999999996422 22222222221 0 1112346
Q ss_pred cEEEEecCCCCChH
Q 001745 633 PMVQISALKGEKVD 646 (1018)
Q Consensus 633 piVeISAktGeGId 646 (1018)
++|++||++|+||+
T Consensus 166 ~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 166 SVQLFSSLKKTGID 179 (179)
T ss_pred ceEEEECCCCCCCC
Confidence 89999999999984
No 197
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.74 E-value=6.8e-17 Score=156.14 Aligned_cols=144 Identities=23% Similarity=0.342 Sum_probs=105.5
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCccc-ccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHH--------HHHhh
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGA--------MRARG 562 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~-~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~--------~r~rg 562 (1018)
.+|+++|++|+|||||+++|...... .....++|+++....+.. .+..+++|||||+..+.. .....
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~ 77 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDI----GGIPVRLIDTAGIRETEDEIEKIGIERAREA 77 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEe----CCEEEEEEECCCcCCCcchHHHHHHHHHHHH
Confidence 57999999999999999999976643 345567776654433332 245799999999866532 22345
Q ss_pred hccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCC
Q 001745 563 ARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (1018)
Q Consensus 563 ~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~e~~g~~vpiVeISAktG 642 (1018)
+..+|++++|+|+++.........+.. ..+.|+++++||+|+...... .......+++++||+++
T Consensus 78 ~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~~~~-------------~~~~~~~~~~~~Sa~~~ 142 (157)
T cd04164 78 IEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPDSEL-------------LSLLAGKPIIAISAKTG 142 (157)
T ss_pred HhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCcccc-------------ccccCCCceEEEECCCC
Confidence 688999999999998555554444433 468999999999999643221 01112468999999999
Q ss_pred CChHHHHHHHHH
Q 001745 643 EKVDDLLETIML 654 (1018)
Q Consensus 643 eGIdeLleaIl~ 654 (1018)
.|+++|+++|..
T Consensus 143 ~~v~~l~~~l~~ 154 (157)
T cd04164 143 EGLDELKEALLE 154 (157)
T ss_pred CCHHHHHHHHHH
Confidence 999999999864
No 198
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.74 E-value=5e-17 Score=163.70 Aligned_cols=157 Identities=17% Similarity=0.171 Sum_probs=109.2
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCccc-ccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCC
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTD 567 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~~v~-~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~AD 567 (1018)
++..+|+++|.+|+|||||+++|....+. ....+ |.+..+....+.+++....+.+|||+|++.|..++..++..+|
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~--T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d 79 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSP--TIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACD 79 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCC--ccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCC
Confidence 35578999999999999999999988775 33333 3332222223344666678999999999999999999999999
Q ss_pred EEEEEEecCCCCChhH-HHHHHHHH-HcCCCEEEEEecCCCCCCChH--HHHHHHH-hcCCCCCCCCCCCcEEEEecCCC
Q 001745 568 IAVIVVAADDGIRPQT-NEAIAHAK-AAGVPIVIAINKIDKDGANPE--RVMQELS-SIGLMPEDWGGDIPMVQISALKG 642 (1018)
Q Consensus 568 iVILVVDAddGv~~QT-~E~I~~ak-~~gIPIIVVINKiDL~~a~~e--rv~~eL~-e~gl~~e~~g~~vpiVeISAktG 642 (1018)
++|||+|+++....+. .+++..+. ..++|+++|+||+|+...... .....+. .+++ ..++++||++|
T Consensus 80 ~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~ 151 (169)
T cd01892 80 VACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGL--------PPPLHFSSKLG 151 (169)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHHHHcCC--------CCCEEEEeccC
Confidence 9999999987422111 12233221 237899999999999532210 1111222 2221 23589999999
Q ss_pred CChHHHHHHHHHH
Q 001745 643 EKVDDLLETIMLV 655 (1018)
Q Consensus 643 eGIdeLleaIl~l 655 (1018)
.|++++|+.|...
T Consensus 152 ~~v~~lf~~l~~~ 164 (169)
T cd01892 152 DSSNELFTKLATA 164 (169)
T ss_pred ccHHHHHHHHHHH
Confidence 9999999998754
No 199
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=99.74 E-value=1.5e-17 Score=155.45 Aligned_cols=93 Identities=56% Similarity=0.868 Sum_probs=89.8
Q ss_pred CcceEEEEeeecCCCcEEEEEeEeeEEecCCEEEEccceeEEEEEeccCCCcccccCCCccEEEeccCCCCCCCCeEEEe
Q 001745 669 AKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEAFGKVRALFDDSGNRVDEAGPSIPVQIIGLNGVPIAGDEFEVV 748 (1018)
Q Consensus 669 ~~g~ViEs~~dkg~G~VatglV~~GtLkvGD~Vv~G~~~gKVRaI~~~~g~~V~eA~pg~~V~V~Gl~~vP~aGd~~~vv 748 (1018)
+.|+|+|+..++++|++++++|++|+|++||+|++|..|||||+|++++|+.+++|.||++|.+.||+++|.|||.|.++
T Consensus 1 a~g~ViE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~~~GkVr~~~d~~g~~v~~a~Ps~~v~i~g~~~~p~aGd~~~~~ 80 (95)
T cd03701 1 AEGTVIESKLDKGRGPVATVIVQNGTLKKGDVIVAGGTYGKIRTMVDENGKALLEAGPSTPVEILGLKDVPKAGDGVLVV 80 (95)
T ss_pred CeEEEEEEEecCCCCeeEEEEEEcCeEecCCEEEECCccceEEEEECCCCCCccccCCCCCEEEeeecCCccCCCEEEEe
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChHHHHHHHHHH
Q 001745 749 DSLDVAREKAEAR 761 (1018)
Q Consensus 749 ~~e~~Ar~~a~~r 761 (1018)
.++++|+.+++.|
T Consensus 81 ~~e~~a~~~~~~r 93 (95)
T cd03701 81 ASEKEAKEIGSYR 93 (95)
T ss_pred CCCHHHHHhhHhh
Confidence 9999999888765
No 200
>PLN03108 Rab family protein; Provisional
Probab=99.74 E-value=8.5e-17 Score=168.15 Aligned_cols=155 Identities=19% Similarity=0.151 Sum_probs=112.1
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEE
Q 001745 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (1018)
Q Consensus 491 ~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVI 570 (1018)
..+|+|+|++++|||||+++|....+.....+ |....+....+.+++..+.+.+|||||++.|..++..++..+|++|
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~--ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL--TIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCC--CccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 47899999999999999999998776543333 3333333333445666778999999999999999999999999999
Q ss_pred EEEecCCCCChhHH-HHHHHHH---HcCCCEEEEEecCCCCCC---ChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCC
Q 001745 571 IVVAADDGIRPQTN-EAIAHAK---AAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (1018)
Q Consensus 571 LVVDAddGv~~QT~-E~I~~ak---~~gIPIIVVINKiDL~~a---~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGe 643 (1018)
+|+|+++....+.. +++..+. ..++|+|+++||+|+... ..+...+....+ .++++++||++|.
T Consensus 84 lv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~---------~~~~~e~Sa~~~~ 154 (210)
T PLN03108 84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEH---------GLIFMEASAKTAQ 154 (210)
T ss_pred EEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHc---------CCEEEEEeCCCCC
Confidence 99999874332222 2222222 246899999999999542 223333333222 2579999999999
Q ss_pred ChHHHHHHHHHHH
Q 001745 644 KVDDLLETIMLVA 656 (1018)
Q Consensus 644 GIdeLleaIl~la 656 (1018)
||+++|+++....
T Consensus 155 ~v~e~f~~l~~~~ 167 (210)
T PLN03108 155 NVEEAFIKTAAKI 167 (210)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999987543
No 201
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.74 E-value=4.5e-17 Score=188.88 Aligned_cols=217 Identities=17% Similarity=0.173 Sum_probs=145.2
Q ss_pred CccHHHHHHHhCCCHHHHHHHHHhCCCcccccccCCHHHHHHHHHhcCCceeecChhhhHHhhhhcccCChhhhhccCCC
Q 001745 411 GMLIEELARNLAIGEGEILGSLYSKGIKPEGVQTLDKDMVKMICKDYEVEVLDADPVKMEEMARKKDLFDEEDLDKLEDR 490 (1018)
Q Consensus 411 ~itv~eLa~~l~~~~~~iik~L~~~G~~~~in~~Ld~e~~~lla~E~g~~v~~~~~~~~e~l~~~~~~~~ee~~~~l~~r 490 (1018)
.+++++|.+.++.....+.+.|+.+ .+.+...||++.-.....++.... ..-...++.+ +... .......
T Consensus 133 ~~A~~~l~G~ls~~~~~~r~~l~~~--~a~iea~iDf~ee~~~~~~~~~~l-~~~~~~l~~l------l~~~-~~~~~~~ 202 (442)
T TIGR00450 133 DIALNKLAGELDQKIEAIRKSLLQL--LAQVEVNIDYEEDDDEQDSLNQLL-LSIIAELKDI------LNSY-KLEKLDD 202 (442)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHH--HHHeeEECCcCCCCccHHHHHHHH-HHHHHHHHHH------HHHH-HHHHhhc
Confidence 4778889999999999999999887 556666676654100000000000 0000111122 2222 2245567
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCcc-cccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHH--------HHh
Q 001745 491 PPVLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAM--------RAR 561 (1018)
Q Consensus 491 ~pkVaImGhvdvGKTTLLnrL~~~~v-~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~--------r~r 561 (1018)
+++|+++|++|+|||||+|+|.+... .....+++|+++....+.+ + +..++||||||+..+... ...
T Consensus 203 g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~--~--g~~v~l~DTaG~~~~~~~ie~~gi~~~~~ 278 (442)
T TIGR00450 203 GFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFEL--N--GILIKLLDTAGIREHADFVERLGIEKSFK 278 (442)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEE--C--CEEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence 88999999999999999999997653 4567789998865444443 3 357899999998654422 235
Q ss_pred hhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHhcCCCCCCCCCCCcEEEEecCC
Q 001745 562 GARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (1018)
Q Consensus 562 g~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~e~~g~~vpiVeISAkt 641 (1018)
++..+|++|+|+|++++...+.. ++..+...++|+|+|+||+|+...+. ..+.. .+ ..+++++||++
T Consensus 279 ~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~~~~----~~~~~------~~--~~~~~~vSak~ 345 (442)
T TIGR00450 279 AIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKINSL----EFFVS------SK--VLNSSNLSAKQ 345 (442)
T ss_pred HHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCCcch----hhhhh------hc--CCceEEEEEec
Confidence 67899999999999987665554 55556556899999999999964311 11111 11 25789999998
Q ss_pred CCChHHHHHHHHHH
Q 001745 642 GEKVDDLLETIMLV 655 (1018)
Q Consensus 642 GeGIdeLleaIl~l 655 (1018)
.||+++++.|...
T Consensus 346 -~gI~~~~~~L~~~ 358 (442)
T TIGR00450 346 -LKIKALVDLLTQK 358 (442)
T ss_pred -CCHHHHHHHHHHH
Confidence 6999999988653
No 202
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.74 E-value=7.9e-17 Score=158.40 Aligned_cols=152 Identities=26% Similarity=0.403 Sum_probs=115.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEEE
Q 001745 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIV 572 (1018)
Q Consensus 493 kVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVILV 572 (1018)
+|+++|+.++|||||+++|.+..+..... .|.+...+...+.+++....+.||||+|++.|..++...+..+|++|+|
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~ 78 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYI--PTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIV 78 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSE--TTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 68999999999999999999887654333 3555556666666778889999999999999999999999999999999
Q ss_pred EecCCCCCh----hHHHHHHHHHHcCCCEEEEEecCCCCC---CChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCCh
Q 001745 573 VAADDGIRP----QTNEAIAHAKAAGVPIVIAINKIDKDG---ANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKV 645 (1018)
Q Consensus 573 VDAddGv~~----QT~E~I~~ak~~gIPIIVVINKiDL~~---a~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGeGI 645 (1018)
+|.++.... .+...+......+.|++|++||.|+.. ...++......+++ ++|+++||+++.||
T Consensus 79 fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~---------~~~~e~Sa~~~~~v 149 (162)
T PF00071_consen 79 FDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELG---------VPYFEVSAKNGENV 149 (162)
T ss_dssp EETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTT---------SEEEEEBTTTTTTH
T ss_pred ccccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhC---------CEEEEEECCCCCCH
Confidence 999873211 222222222223588999999999854 23344444444432 68999999999999
Q ss_pred HHHHHHHHHH
Q 001745 646 DDLLETIMLV 655 (1018)
Q Consensus 646 deLleaIl~l 655 (1018)
.++|..++..
T Consensus 150 ~~~f~~~i~~ 159 (162)
T PF00071_consen 150 KEIFQELIRK 159 (162)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998754
No 203
>COG1159 Era GTPase [General function prediction only]
Probab=99.73 E-value=2.3e-17 Score=179.79 Aligned_cols=156 Identities=28% Similarity=0.396 Sum_probs=117.4
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCccc-ccccCCceeeeeeEEEEEecCCceecEEEEeCCC-ccc---h----HHHH
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG-HEA---F----GAMR 559 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~~v~-~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPG-HE~---F----~~~r 559 (1018)
.+.-.|+|+|.||+|||||+|+|.+.++. .+..+.+|++.-..- +...+.++.|+|||| |+. + ....
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI----~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a 79 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGI----VTTDNAQIIFVDTPGIHKPKHALGELMNKAA 79 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEE----EEcCCceEEEEeCCCCCCcchHHHHHHHHHH
Confidence 35567999999999999999999998876 567788888742222 223467899999999 322 2 2223
Q ss_pred HhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCCh--HHHHHHHHhcCCCCCCCCCCCcEEEE
Q 001745 560 ARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANP--ERVMQELSSIGLMPEDWGGDIPMVQI 637 (1018)
Q Consensus 560 ~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~--erv~~eL~e~gl~~e~~g~~vpiVeI 637 (1018)
...+..+|+++||+|+++++.+.+...++.++..+.|+|+++||+|+..... ..+.+.+.... ....+|++
T Consensus 80 ~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~-------~f~~ivpi 152 (298)
T COG1159 80 RSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIAFLKKLL-------PFKEIVPI 152 (298)
T ss_pred HHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHHHHHHHHHHHhhC-------CcceEEEe
Confidence 3456889999999999999999998899999887889999999999854332 22222222211 12479999
Q ss_pred ecCCCCChHHHHHHHHHH
Q 001745 638 SALKGEKVDDLLETIMLV 655 (1018)
Q Consensus 638 SAktGeGIdeLleaIl~l 655 (1018)
||++|.|++.|++.|...
T Consensus 153 SA~~g~n~~~L~~~i~~~ 170 (298)
T COG1159 153 SALKGDNVDTLLEIIKEY 170 (298)
T ss_pred eccccCCHHHHHHHHHHh
Confidence 999999999999988643
No 204
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.73 E-value=6e-17 Score=186.18 Aligned_cols=149 Identities=26% Similarity=0.410 Sum_probs=116.6
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcc-cccccCCceeeeeeEEEEEecCCceecEEEEeCCCccc--------hHHHHHhh
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA--------FGAMRARG 562 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v-~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~--------F~~~r~rg 562 (1018)
++|+|+|++|+|||||+++|.+.+. .....+++|++.....+.+ ++ ..+.||||||++. +......+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~--~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 77 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEW--LG--REFILIDTGGIEPDDDGFEKQIREQAELA 77 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEE--CC--cEEEEEECCCCCCcchhHHHHHHHHHHHH
Confidence 6899999999999999999998764 3556778888866555443 33 6799999999987 23334456
Q ss_pred hccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCC
Q 001745 563 ARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (1018)
Q Consensus 563 ~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~e~~g~~vpiVeISAktG 642 (1018)
+..+|++|+|+|+.++......+....++..++|+|+|+||+|+.. .+....++...++ ..++++||++|
T Consensus 78 ~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~--~~~~~~~~~~lg~--------~~~~~iSa~~g 147 (435)
T PRK00093 78 IEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPD--EEADAYEFYSLGL--------GEPYPISAEHG 147 (435)
T ss_pred HHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCcc--chhhHHHHHhcCC--------CCCEEEEeeCC
Confidence 7899999999999998888888888888888999999999999753 2222233333332 23799999999
Q ss_pred CChHHHHHHHHH
Q 001745 643 EKVDDLLETIML 654 (1018)
Q Consensus 643 eGIdeLleaIl~ 654 (1018)
.|+++|++.|..
T Consensus 148 ~gv~~l~~~I~~ 159 (435)
T PRK00093 148 RGIGDLLDAILE 159 (435)
T ss_pred CCHHHHHHHHHh
Confidence 999999999975
No 205
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.73 E-value=4.3e-17 Score=167.96 Aligned_cols=150 Identities=25% Similarity=0.303 Sum_probs=102.7
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccc---------hHHHHH
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA---------FGAMRA 560 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~---------F~~~r~ 560 (1018)
.-++|+|+|++|||||||+++|.+..+......+.|.+.....+.+ .+ ...+.||||||+.. |....
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~~- 115 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRL--PD-GREVLLTDTVGFIRDLPHQLVEAFRSTL- 115 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEe--cC-CceEEEeCCCccccCCCHHHHHHHHHHH-
Confidence 3479999999999999999999987655444455565544433332 22 23799999999732 22221
Q ss_pred hhhccCCEEEEEEecCCCCChhHH----HHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHhcCCCCCCCCCCCcEEE
Q 001745 561 RGARVTDIAVIVVAADDGIRPQTN----EAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQ 636 (1018)
Q Consensus 561 rg~~~ADiVILVVDAddGv~~QT~----E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~e~~g~~vpiVe 636 (1018)
..+..+|++++|+|+++....+.. +.+..+...++|+++|+||+|+....... ..+ .....++++
T Consensus 116 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~--~~~---------~~~~~~~~~ 184 (204)
T cd01878 116 EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE--ERL---------EAGRPDAVF 184 (204)
T ss_pred HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH--HHh---------hcCCCceEE
Confidence 235689999999999986544332 22233333468999999999995432221 111 112467999
Q ss_pred EecCCCCChHHHHHHHHH
Q 001745 637 ISALKGEKVDDLLETIML 654 (1018)
Q Consensus 637 ISAktGeGIdeLleaIl~ 654 (1018)
+||++|.|+++++++|..
T Consensus 185 ~Sa~~~~gi~~l~~~L~~ 202 (204)
T cd01878 185 ISAKTGEGLDELLEAIEE 202 (204)
T ss_pred EEcCCCCCHHHHHHHHHh
Confidence 999999999999999863
No 206
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.73 E-value=2.4e-17 Score=172.47 Aligned_cols=116 Identities=35% Similarity=0.517 Sum_probs=91.8
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccc-------------------cccCCceeeeeeEEEEEec-CCceecEEEEeCCC
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAA-------------------AEAGGITQGIGAYKVQVPV-DGKLQPCVFLDTPG 551 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~-------------------~e~gGiTqdIga~~V~i~~-dgk~~~ItfIDTPG 551 (1018)
++|+|+||+|||||||+++|+...... ....|+|.+.....+.+.- ++..+.++||||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 369999999999999999998543221 1223455444433333321 34568899999999
Q ss_pred ccchHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCC
Q 001745 552 HEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKD 607 (1018)
Q Consensus 552 HE~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~ 607 (1018)
|+.|...+..++..+|++|+|+|+.++...++.+++..+...++|+++++||+|+.
T Consensus 81 ~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 81 HVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred CcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 99999999999999999999999999988888888888877789999999999985
No 207
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.73 E-value=5.2e-17 Score=186.07 Aligned_cols=149 Identities=25% Similarity=0.426 Sum_probs=118.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCccc-ccccCCceeeeeeEEEEEecCCceecEEEEeCCCc--------cchHHHHHhhh
Q 001745 493 VLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH--------EAFGAMRARGA 563 (1018)
Q Consensus 493 kVaImGhvdvGKTTLLnrL~~~~v~-~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGH--------E~F~~~r~rg~ 563 (1018)
+|+|+|++|+|||||+|+|.+.... ....+|+|++.....+.+ .+..+.||||||+ +.+......++
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~----~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~ 76 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEW----GGREFILIDTGGIEEDDDGLDKQIREQAEIAI 76 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEE----CCeEEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence 4899999999999999999987643 456778898865555443 3356999999997 44555666778
Q ss_pred ccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCC
Q 001745 564 RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (1018)
Q Consensus 564 ~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGe 643 (1018)
..+|++++|+|+.++......+.+..++..+.|+|+|+||+|+..... ...++..+++ .+++++||++|.
T Consensus 77 ~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~--~~~~~~~lg~--------~~~~~vSa~~g~ 146 (429)
T TIGR03594 77 EEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDA--VAAEFYSLGF--------GEPIPISAEHGR 146 (429)
T ss_pred hhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCcccc--cHHHHHhcCC--------CCeEEEeCCcCC
Confidence 999999999999999999999999999888999999999999864322 2233333332 368999999999
Q ss_pred ChHHHHHHHHHH
Q 001745 644 KVDDLLETIMLV 655 (1018)
Q Consensus 644 GIdeLleaIl~l 655 (1018)
|+++|++++...
T Consensus 147 gv~~ll~~i~~~ 158 (429)
T TIGR03594 147 GIGDLLDAILEL 158 (429)
T ss_pred ChHHHHHHHHHh
Confidence 999999998744
No 208
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.72 E-value=4.3e-17 Score=157.76 Aligned_cols=133 Identities=24% Similarity=0.328 Sum_probs=92.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCc-----cchHHHHHhhhccCC
Q 001745 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH-----EAFGAMRARGARVTD 567 (1018)
Q Consensus 493 kVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGH-----E~F~~~r~rg~~~AD 567 (1018)
+|+++|++|+|||||+++|.+..+.. ..|..+ . +. -.+|||||+ +.|..+. ..++.+|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~~----~~t~~~-----~--~~-----~~~iDt~G~~~~~~~~~~~~~-~~~~~ad 64 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEILY----KKTQAV-----E--YN-----DGAIDTPGEYVENRRLYSALI-VTAADAD 64 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcccc----ccceeE-----E--Ec-----CeeecCchhhhhhHHHHHHHH-HHhhcCC
Confidence 79999999999999999998765421 123221 1 11 168999997 2344443 3578999
Q ss_pred EEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCC--ChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCCh
Q 001745 568 IAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGA--NPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKV 645 (1018)
Q Consensus 568 iVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a--~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGeGI 645 (1018)
++|+|+|++++...+...++.. ...|+|+++||+|+... ..+.....+...+ ..+++++||++|.|+
T Consensus 65 ~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~~~gi 133 (142)
T TIGR02528 65 VIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLAEADVDIERAKELLETAG--------AEPIFEISSVDEQGL 133 (142)
T ss_pred EEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccCCcccCHHHHHHHHHHcC--------CCcEEEEecCCCCCH
Confidence 9999999998776655443332 24599999999999542 1222222233322 137999999999999
Q ss_pred HHHHHHHH
Q 001745 646 DDLLETIM 653 (1018)
Q Consensus 646 deLleaIl 653 (1018)
++||++|.
T Consensus 134 ~~l~~~l~ 141 (142)
T TIGR02528 134 EALVDYLN 141 (142)
T ss_pred HHHHHHHh
Confidence 99999874
No 209
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.72 E-value=1e-16 Score=166.69 Aligned_cols=152 Identities=19% Similarity=0.187 Sum_probs=101.2
Q ss_pred CEEEEEeCCCCCHHHHHH-HHHcCcccc---cccCCceee-eeeEEEE--------EecCCceecEEEEeCCCccchHHH
Q 001745 492 PVLTIMGHVDHGKTTLLD-HIRKTKVAA---AEAGGITQG-IGAYKVQ--------VPVDGKLQPCVFLDTPGHEAFGAM 558 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLn-rL~~~~v~~---~e~gGiTqd-Iga~~V~--------i~~dgk~~~ItfIDTPGHE~F~~~ 558 (1018)
.+|+++|+.++|||||+. ++.+..+.. ......|.. +..|... ..+++..+.+.||||+|++. .+
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~~ 80 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--KD 80 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--hh
Confidence 589999999999999996 555443321 111223432 1222221 13567788999999999976 35
Q ss_pred HHhhhccCCEEEEEEecCCCCChhHHH--HHHHHHH--cCCCEEEEEecCCCCCC----------------------ChH
Q 001745 559 RARGARVTDIAVIVVAADDGIRPQTNE--AIAHAKA--AGVPIVIAINKIDKDGA----------------------NPE 612 (1018)
Q Consensus 559 r~rg~~~ADiVILVVDAddGv~~QT~E--~I~~ak~--~gIPIIVVINKiDL~~a----------------------~~e 612 (1018)
+..+++.+|++|||+|+++....+... ++..++. .++|+|+|+||+|+... ..+
T Consensus 81 ~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~ 160 (195)
T cd01873 81 RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPE 160 (195)
T ss_pred hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCHH
Confidence 566789999999999999854433321 2333332 46899999999998532 111
Q ss_pred HHHHHHHhcCCCCCCCCCCCcEEEEecCCCCChHHHHHHHHH
Q 001745 613 RVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIML 654 (1018)
Q Consensus 613 rv~~eL~e~gl~~e~~g~~vpiVeISAktGeGIdeLleaIl~ 654 (1018)
+......++ .++|++|||++|.||+++|+.++.
T Consensus 161 e~~~~a~~~---------~~~~~E~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 161 TGRAVAKEL---------GIPYYETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred HHHHHHHHh---------CCEEEEcCCCCCCCHHHHHHHHHH
Confidence 222211121 268999999999999999999875
No 210
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.72 E-value=1.4e-16 Score=194.48 Aligned_cols=160 Identities=21% Similarity=0.296 Sum_probs=119.9
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcc-cccccCCceeeeeeEEEEEecCCceecEEEEeCCCc----------cchHHH
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH----------EAFGAM 558 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v-~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGH----------E~F~~~ 558 (1018)
..++|+|+|++|+|||||+++|.+... ...+.+|+|++.....+. +++ ..+.||||||+ +.|..+
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~--~~~--~~~~liDTaG~~~~~~~~~~~e~~~~~ 524 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVE--IDG--EDWLFIDTAGIKRRQHKLTGAEYYSSL 524 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEE--ECC--CEEEEEECCCcccCcccchhHHHHHHH
Confidence 468999999999999999999998764 356778889775433333 343 45889999994 334444
Q ss_pred HH-hhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCCh-HHHHHHHHhcCCCCCCCCCCCcEEE
Q 001745 559 RA-RGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANP-ERVMQELSSIGLMPEDWGGDIPMVQ 636 (1018)
Q Consensus 559 r~-rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~-erv~~eL~e~gl~~e~~g~~vpiVe 636 (1018)
+. ..+..+|++|+|+|++++...+....+..+...++|+|+|+||+|+..... +.+...+.. .+... ...++++
T Consensus 525 r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~~~~~~~~~~~~~-~l~~~---~~~~ii~ 600 (712)
T PRK09518 525 RTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDEFRRQRLERLWKT-EFDRV---TWARRVN 600 (712)
T ss_pred HHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCChhHHHHHHHHHHH-hccCC---CCCCEEE
Confidence 43 346899999999999999999999888888888999999999999964322 222222222 11111 2368899
Q ss_pred EecCCCCChHHHHHHHHHHHH
Q 001745 637 ISALKGEKVDDLLETIMLVAE 657 (1018)
Q Consensus 637 ISAktGeGIdeLleaIl~lae 657 (1018)
+||++|.|+++|++.+....+
T Consensus 601 iSAktg~gv~~L~~~i~~~~~ 621 (712)
T PRK09518 601 LSAKTGWHTNRLAPAMQEALE 621 (712)
T ss_pred EECCCCCCHHHHHHHHHHHHH
Confidence 999999999999999976654
No 211
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.71 E-value=2.6e-16 Score=166.18 Aligned_cols=154 Identities=20% Similarity=0.225 Sum_probs=103.7
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhc-cCCEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGAR-VTDIAV 570 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~-~ADiVI 570 (1018)
.+|+++|.+|+|||||+++|....+.... ...|....++...+.+++....+.||||||++. ..+...+. .+|++|
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~-~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~ii 77 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHA-YDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFV 77 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccC-cCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEE
Confidence 47999999999999999999876654111 122322223344444566778899999999983 33444556 899999
Q ss_pred EEEecCCCCChhH-HHHHHHHHH----cCCCEEEEEecCCCCCCC---hHHHHHHHHhcCCCCCCCCCCCcEEEEecCCC
Q 001745 571 IVVAADDGIRPQT-NEAIAHAKA----AGVPIVIAINKIDKDGAN---PERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (1018)
Q Consensus 571 LVVDAddGv~~QT-~E~I~~ak~----~gIPIIVVINKiDL~~a~---~erv~~eL~e~gl~~e~~g~~vpiVeISAktG 642 (1018)
+|||+++....+. .+++..+.. .++|+|+|+||+|+.... .++. ..+... + .++++++||++|
T Consensus 78 lV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~-~~~a~~------~--~~~~~e~SA~~~ 148 (221)
T cd04148 78 VVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEG-RACAVV------F--DCKFIETSAGLQ 148 (221)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHH-HHHHHH------c--CCeEEEecCCCC
Confidence 9999998432221 222333332 468999999999985422 1111 122211 1 257999999999
Q ss_pred CChHHHHHHHHHHHH
Q 001745 643 EKVDDLLETIMLVAE 657 (1018)
Q Consensus 643 eGIdeLleaIl~lae 657 (1018)
.||+++|++|.....
T Consensus 149 ~gv~~l~~~l~~~~~ 163 (221)
T cd04148 149 HNVDELLEGIVRQIR 163 (221)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999986543
No 212
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.71 E-value=1.6e-16 Score=179.49 Aligned_cols=149 Identities=29% Similarity=0.352 Sum_probs=108.6
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCc---------cchHHHHH
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH---------EAFGAMRA 560 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGH---------E~F~~~r~ 560 (1018)
..++|+|+|++|+|||||+|+|.+..+......++|.+.....+.+. .+..+.||||||. +.|...+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~---~~~~i~l~DT~G~~~~l~~~lie~f~~tl- 263 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLP---DGGEVLLTDTVGFIRDLPHELVAAFRATL- 263 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeC---CCceEEEEecCcccccCCHHHHHHHHHHH-
Confidence 45899999999999999999999887666777888988766665542 2347999999996 3444433
Q ss_pred hhhccCCEEEEEEecCCCCChhHH----HHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHhcCCCCCCCCCCCcEEE
Q 001745 561 RGARVTDIAVIVVAADDGIRPQTN----EAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQ 636 (1018)
Q Consensus 561 rg~~~ADiVILVVDAddGv~~QT~----E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~e~~g~~vpiVe 636 (1018)
..+..+|++|+|+|+++....+.. +.+..+...+.|+|+|+||+|+... ..+. .+.. ...++++
T Consensus 264 e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~--~~v~-~~~~---------~~~~~i~ 331 (351)
T TIGR03156 264 EEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDE--PRIE-RLEE---------GYPEAVF 331 (351)
T ss_pred HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCCh--HhHH-HHHh---------CCCCEEE
Confidence 357899999999999986544332 2333333347899999999999532 2221 1111 1146899
Q ss_pred EecCCCCChHHHHHHHHH
Q 001745 637 ISALKGEKVDDLLETIML 654 (1018)
Q Consensus 637 ISAktGeGIdeLleaIl~ 654 (1018)
+||++|.||++|+++|..
T Consensus 332 iSAktg~GI~eL~~~I~~ 349 (351)
T TIGR03156 332 VSAKTGEGLDLLLEAIAE 349 (351)
T ss_pred EEccCCCCHHHHHHHHHh
Confidence 999999999999999863
No 213
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.70 E-value=2.9e-16 Score=159.63 Aligned_cols=156 Identities=22% Similarity=0.323 Sum_probs=110.4
Q ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHcCcc--cccccCCceeeeeeEEEEEecCCceecEEEEeCCCc----------cch
Q 001745 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKV--AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH----------EAF 555 (1018)
Q Consensus 488 ~~r~pkVaImGhvdvGKTTLLnrL~~~~v--~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGH----------E~F 555 (1018)
....++|+|+|++|+|||||+++|.+..+ ......+.|+++..+.+ ...+.||||||+ +.|
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-------~~~l~l~DtpG~~~~~~~~~~~~~~ 93 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV-------NDKLRLVDLPGYGYAKVSKEEKEKW 93 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec-------CCeEEEeCCCCCCCcCCCchHHHHH
Confidence 34678999999999999999999998642 23344567776654432 246999999995 345
Q ss_pred HHHHHhhhc---cCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCC-hHHHHHHHHhcCCCCCCCCCC
Q 001745 556 GAMRARGAR---VTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGD 631 (1018)
Q Consensus 556 ~~~r~rg~~---~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~-~erv~~eL~e~gl~~e~~g~~ 631 (1018)
..+...++. .++++++|+|++++......+....+...++|+++++||+|+.... .++....+... +. .. .
T Consensus 94 ~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~-l~--~~--~ 168 (196)
T PRK00454 94 QKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKA-LK--FG--D 168 (196)
T ss_pred HHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHH-HH--hc--C
Confidence 555555554 3478889999988777666666677777889999999999985432 22222222221 10 00 3
Q ss_pred CcEEEEecCCCCChHHHHHHHHHH
Q 001745 632 IPMVQISALKGEKVDDLLETIMLV 655 (1018)
Q Consensus 632 vpiVeISAktGeGIdeLleaIl~l 655 (1018)
.+++++||++|.|++++++.|..+
T Consensus 169 ~~~~~~Sa~~~~gi~~l~~~i~~~ 192 (196)
T PRK00454 169 DEVILFSSLKKQGIDELRAAIAKW 192 (196)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH
Confidence 679999999999999999998644
No 214
>PRK00089 era GTPase Era; Reviewed
Probab=99.70 E-value=2.3e-16 Score=172.37 Aligned_cols=158 Identities=26% Similarity=0.359 Sum_probs=112.6
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCccc-ccccCCceeeeeeEEEEEecCCceecEEEEeCCCccch--------HHHHH
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAF--------GAMRA 560 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v~-~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F--------~~~r~ 560 (1018)
+...|+|+|++|+|||||+|+|.+.++. .+..+.+|++.... +. ...+..+.||||||+... .....
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~-i~---~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~ 79 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRG-IV---TEDDAQIIFVDTPGIHKPKRALNRAMNKAAW 79 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEE-EE---EcCCceEEEEECCCCCCchhHHHHHHHHHHH
Confidence 5567999999999999999999987764 34455566543211 11 113367999999995432 23344
Q ss_pred hhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHhcCCCCCCCCCCCcEEEEecC
Q 001745 561 RGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (1018)
Q Consensus 561 rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~e~~g~~vpiVeISAk 640 (1018)
..+..+|++++|+|+++.......+.+..+...+.|+++|+||+|+.. +.......+..+.- ..+..+++++||+
T Consensus 80 ~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~-~~~~l~~~~~~l~~----~~~~~~i~~iSA~ 154 (292)
T PRK00089 80 SSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVK-DKEELLPLLEELSE----LMDFAEIVPISAL 154 (292)
T ss_pred HHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCC-CHHHHHHHHHHHHh----hCCCCeEEEecCC
Confidence 567899999999999997777777777777777899999999999963 22222222222211 0123679999999
Q ss_pred CCCChHHHHHHHHHHH
Q 001745 641 KGEKVDDLLETIMLVA 656 (1018)
Q Consensus 641 tGeGIdeLleaIl~la 656 (1018)
+|.|+++|+++|....
T Consensus 155 ~~~gv~~L~~~L~~~l 170 (292)
T PRK00089 155 KGDNVDELLDVIAKYL 170 (292)
T ss_pred CCCCHHHHHHHHHHhC
Confidence 9999999999987554
No 215
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.70 E-value=1.5e-16 Score=159.63 Aligned_cols=140 Identities=20% Similarity=0.278 Sum_probs=98.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCc----cchHHHHHhhhccCCE
Q 001745 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH----EAFGAMRARGARVTDI 568 (1018)
Q Consensus 493 kVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGH----E~F~~~r~rg~~~ADi 568 (1018)
+|+++|++|+|||||+++|.+..... ..|+.+ .+ ... .+|||||. ..+...+..++..+|+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~----~~~~~v-----~~--~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~ 67 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA----RKTQAV-----EF--NDK----GDIDTPGEYFSHPRWYHALITTLQDVDM 67 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC----ccceEE-----EE--CCC----CcccCCccccCCHHHHHHHHHHHhcCCE
Confidence 69999999999999999987643211 123221 11 222 26999996 2333333445789999
Q ss_pred EEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCChHHH
Q 001745 569 AVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDL 648 (1018)
Q Consensus 569 VILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGeGIdeL 648 (1018)
+|+|+|++++........... ..+.|+++++||+|+...+.+.+.+.+.+.++ ..|++++||++|+||++|
T Consensus 68 il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~~~~~~~~~~~~~~~~-------~~p~~~~Sa~~g~gi~~l 138 (158)
T PRK15467 68 LIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPDADVAATRKLLLETGF-------EEPIFELNSHDPQSVQQL 138 (158)
T ss_pred EEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCcccHHHHHHHHHHcCC-------CCCEEEEECCCccCHHHH
Confidence 999999998654433333222 24679999999999977666666655555443 258999999999999999
Q ss_pred HHHHHHHH
Q 001745 649 LETIMLVA 656 (1018)
Q Consensus 649 leaIl~la 656 (1018)
+++|....
T Consensus 139 ~~~l~~~~ 146 (158)
T PRK15467 139 VDYLASLT 146 (158)
T ss_pred HHHHHHhc
Confidence 99987543
No 216
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.70 E-value=2.1e-17 Score=165.39 Aligned_cols=153 Identities=19% Similarity=0.178 Sum_probs=117.9
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEE
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiV 569 (1018)
..++|.++|..|+|||||+-+|..+.+.. ...+|+++.+....+.++++..++.+|||+|+|+|+.+...+++.|.++
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~--~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGi 87 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDD--LHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGI 87 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCc--cCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCcee
Confidence 34789999999999999999999887764 3456788888887788899999999999999999999999999999999
Q ss_pred EEEEecCCCCChhHHHHH-----HHHHHcCCCEEEEEecCCCCC---CChHHHHHHHHhcCCCCCCCCCCCcEEEEecCC
Q 001745 570 VIVVAADDGIRPQTNEAI-----AHAKAAGVPIVIAINKIDKDG---ANPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (1018)
Q Consensus 570 ILVVDAddGv~~QT~E~I-----~~ak~~gIPIIVVINKiDL~~---a~~erv~~eL~e~gl~~e~~g~~vpiVeISAkt 641 (1018)
|+|||++........++| .+....++-.++|+||+|... .+.++=+.....+ .+-|+++||++
T Consensus 88 IlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h---------~~LFiE~SAkt 158 (209)
T KOG0080|consen 88 ILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKH---------RCLFIECSAKT 158 (209)
T ss_pred EEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhh---------CcEEEEcchhh
Confidence 999999864332222322 222234555789999999842 1222222223333 36799999999
Q ss_pred CCChHHHHHHHH
Q 001745 642 GEKVDDLLETIM 653 (1018)
Q Consensus 642 GeGIdeLleaIl 653 (1018)
.+|+...|+.+.
T Consensus 159 ~~~V~~~Feelv 170 (209)
T KOG0080|consen 159 RENVQCCFEELV 170 (209)
T ss_pred hccHHHHHHHHH
Confidence 999999998876
No 217
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.70 E-value=1.8e-16 Score=172.82 Aligned_cols=126 Identities=32% Similarity=0.493 Sum_probs=97.3
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCcccccc----------------------cCCceeeeeeEEEEEecCCceecEEEEe
Q 001745 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAE----------------------AGGITQGIGAYKVQVPVDGKLQPCVFLD 548 (1018)
Q Consensus 491 ~pkVaImGhvdvGKTTLLnrL~~~~v~~~e----------------------~gGiTqdIga~~V~i~~dgk~~~ItfID 548 (1018)
..+|+|+||+|+|||||+++|+........ ..++|.. .....+.++++.++|||
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~----~~~~~~~~~~~~i~liD 77 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVT----SSVMQFEYRDCVINLLD 77 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeE----EEEEEEeeCCEEEEEEE
Confidence 368999999999999999999753211111 1122322 22222345668899999
Q ss_pred CCCccchHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHh
Q 001745 549 TPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSS 620 (1018)
Q Consensus 549 TPGHE~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e 620 (1018)
||||..|...+..+++.+|++|+|+|+++++..++..++..+...++|+++++||+|+..++..++..++.+
T Consensus 78 TPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~l~~ 149 (267)
T cd04169 78 TPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRDPLELLDEIEE 149 (267)
T ss_pred CCCchHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCCCHHHHHHHHHH
Confidence 999999999888899999999999999999999999999888888999999999999976665555554443
No 218
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=6.5e-17 Score=180.45 Aligned_cols=239 Identities=28% Similarity=0.388 Sum_probs=173.7
Q ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHcCcc-------------------------------cccccCCceeeeeeEEEEEe
Q 001745 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKV-------------------------------AAAEAGGITQGIGAYKVQVP 536 (1018)
Q Consensus 488 ~~r~pkVaImGhvdvGKTTLLnrL~~~~v-------------------------------~~~e~gGiTqdIga~~V~i~ 536 (1018)
.....+++++||+++||||+-..|..... ......|-|..++...++.
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEt- 154 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFET- 154 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEe-
Confidence 45677899999999999998776531100 0112235666666666554
Q ss_pred cCCceecEEEEeCCCccchHHHHHhhhccCCEEEEEEecCCC-------CChhHHHHHHHHHHcCCC-EEEEEecCCCCC
Q 001745 537 VDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDG-------IRPQTNEAIAHAKAAGVP-IVIAINKIDKDG 608 (1018)
Q Consensus 537 ~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVILVVDAddG-------v~~QT~E~I~~ak~~gIP-IIVVINKiDL~~ 608 (1018)
...+++++|+|||..|...+..++.+||+.+||+.+..+ -..||+++..+++..++. +|+++||||-+.
T Consensus 155 ---e~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPt 231 (501)
T KOG0459|consen 155 ---ENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPT 231 (501)
T ss_pred ---cceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCc
Confidence 345799999999999999999999999999999999753 246999999999999987 999999999854
Q ss_pred --CChHHH-------HHHHHhcCCCCCCCCCCCcEEEEecCCCCChHHHHHHHH----------HHHHHhhhhcCCCCCC
Q 001745 609 --ANPERV-------MQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIM----------LVAELQELKANPHRNA 669 (1018)
Q Consensus 609 --a~~erv-------~~eL~e~gl~~e~~g~~vpiVeISAktGeGIdeLleaIl----------~lael~~lk~~p~r~~ 669 (1018)
|+.+++ ...|..+++... .+..|+++|..+|.++.+..+... -+..+..+....+.++
T Consensus 232 vnWs~eRy~E~~~k~~~fLr~~g~n~~---~d~~f~p~sg~tG~~~k~~~~s~cpwy~gp~fl~~ld~l~~~~R~~~GP~ 308 (501)
T KOG0459|consen 232 VNWSNERYEECKEKLQPFLRKLGFNPK---PDKHFVPVSGLTGANVKDRTDSVCPWYKGPIFLEYLDELPHLERILNGPI 308 (501)
T ss_pred cCcchhhHHHHHHHHHHHHHHhcccCC---CCceeeecccccccchhhcccccCCcccCCccceehhccCcccccCCCCE
Confidence 443333 333444555433 367899999999999999775211 0111222223334444
Q ss_pred cceEEEEeeecCCCcEEEEEeEeeEEecCCEEEEcc--ceeEEEEEeccCCCcccccCCCccEEE--eccC
Q 001745 670 KGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE--AFGKVRALFDDSGNRVDEAGPSIPVQI--IGLN 736 (1018)
Q Consensus 670 ~g~ViEs~~dkg~G~VatglV~~GtLkvGD~Vv~G~--~~gKVRaI~~~~g~~V~eA~pg~~V~V--~Gl~ 736 (1018)
...|.+-+ +..|+|+.|.+.+|+++.|+.+++-+ ....|.+|+++ ...++.+.||+.|.+ .|++
T Consensus 309 ~~pI~~Ky--kdmGTvv~GKvEsGsi~kg~~lvvMPnk~~veV~~I~~d-dvE~~~~~pGenvk~rlkgie 376 (501)
T KOG0459|consen 309 RCPVANKY--KDMGTVVGGKVESGSIKKGQQLVVMPNKTNVEVLGIYSD-DVETDRVAPGENVKLRLKGIE 376 (501)
T ss_pred Eeehhhhc--cccceEEEEEecccceecCCeEEEccCCcceEEEEEecc-cceeeeccCCcceEEEecccc
Confidence 44444333 45699999999999999999998855 46789999998 678999999999975 4653
No 219
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=2.6e-17 Score=182.90 Aligned_cols=320 Identities=23% Similarity=0.312 Sum_probs=216.3
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCc--------c----------cccccCCceeeeeeEEEEEecCCceecEEEEeCCC
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTK--------V----------AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG 551 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~--------v----------~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPG 551 (1018)
+..+|+||.|.|+||||...+|+.-. + ......|||+.-. . +.++++++++++|||||
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsa--a--v~fdwkg~rinlidtpg 111 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSA--A--VNFDWKGHRINLIDTPG 111 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeee--e--eecccccceEeeecCCC
Confidence 34579999999999999999886311 1 1234567775532 2 33577889999999999
Q ss_pred ccchHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHh-c---------
Q 001745 552 HEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSS-I--------- 621 (1018)
Q Consensus 552 HE~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e-~--------- 621 (1018)
|.+|+-...|.++.-|+++.|+|++-|+.+||.-.|+++.++++|-++++||||+..++.+..+..+.+ +
T Consensus 112 hvdf~leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~anfe~avdsi~ekl~ak~l~l~l 191 (753)
T KOG0464|consen 112 HVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAANFENAVDSIEEKLGAKALKLQL 191 (753)
T ss_pred cceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhhhhhhHHHHHHHHhCCceEEEEe
Confidence 999999999999999999999999999999999999999999999999999999865543222111111 0
Q ss_pred ------CCC---------------------------------------------------------------CCCC----
Q 001745 622 ------GLM---------------------------------------------------------------PEDW---- 628 (1018)
Q Consensus 622 ------gl~---------------------------------------------------------------~e~~---- 628 (1018)
++. .++|
T Consensus 192 pi~eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~knal~~qlad~~~dfad~~ldef~~n~ 271 (753)
T KOG0464|consen 192 PIGEAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEAKNALCEQLADLDADFADKFLDEFDENF 271 (753)
T ss_pred cccccccccchHHHHHHHhhccCCCCCCccccccCCcccccCCHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhccc
Confidence 000 0000
Q ss_pred ------------------CCCCcEEEEecCCCCChHHHHHHHHHHHHHhhhhcCCCCC----------CcceEEEEeeec
Q 001745 629 ------------------GGDIPMVQISALKGEKVDDLLETIMLVAELQELKANPHRN----------AKGTVIEAGLHK 680 (1018)
Q Consensus 629 ------------------g~~vpiVeISAktGeGIdeLleaIl~lael~~lk~~p~r~----------~~g~ViEs~~dk 680 (1018)
...+++..-||.++.||.-|++++.... ....++. .-..-+.+-.++
T Consensus 272 d~i~a~elksai~~lt~aq~a~~i~cgsaiknkgiqplldavtmyl-----pspeernyeflqwykddlcalafkvlhdk 346 (753)
T KOG0464|consen 272 DKIDAEELKSAIHELTCAQKAAPILCGSAIKNKGIQPLLDAVTMYL-----PSPEERNYEFLQWYKDDLCALAFKVLHDK 346 (753)
T ss_pred cccCHHHHHHHHHHHhhhhhhcceehhhhhcccCccchhhhhhhcc-----CChhhcchHHHhhhhhhHHHHhhhhhccc
Confidence 1236788899999999999999875321 1111111 122234556789
Q ss_pred CCCcEEEEEeEeeEEecCCEEEE--ccceeEEEEEec---cCCCcccccCCCccEEEeccCCCCCCCCeEEEecChHHHH
Q 001745 681 SKGPVATFILQNGTLKKGDVVVC--GEAFGKVRALFD---DSGNRVDEAGPSIPVQIIGLNGVPIAGDEFEVVDSLDVAR 755 (1018)
Q Consensus 681 g~G~VatglV~~GtLkvGD~Vv~--G~~~gKVRaI~~---~~g~~V~eA~pg~~V~V~Gl~~vP~aGd~~~vv~~e~~Ar 755 (1018)
.+|+....++++|+|+..-.|.- |....++-.++. +.+..+.+..+|....+.||+.. ..||.+.... ..|.
T Consensus 347 qrg~l~fmriysgsi~~~~ai~nin~~~se~~~kl~~pfade~~~i~qlsagnialt~glk~t-atgdtivask--asa~ 423 (753)
T KOG0464|consen 347 QRGPLSFMRIYSGSIHNNLAIFNINGMCSEGILKLFLPFADEHREIEQLSAGNIALTAGLKHT-ATGDTIVASK--ASAE 423 (753)
T ss_pred ccCceeEEEEecccccCceeeeecccccccchHhhhccchhhhhhhhhcccccEEEEecceee-ccCCeEEecc--hhHH
Confidence 99999999999999999987754 444444544433 34567899999999999999986 7999876533 2332
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCccchhhhHHHhhcCccCCCCc--ceeeEEEEcCCCccHHHHHHHHHhCCCCCeEEEEE
Q 001745 756 EKAEARAFSLRNERISAKAGDGKVTLSSLASAVSAGKLSGLDL--HQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFL 833 (1018)
Q Consensus 756 ~~a~~r~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~l~vIiKaDv~GSlEAi~~~L~~l~~~~v~i~ii 833 (1018)
..+ ++++..-+....+. .+. ..+ -+.+++. ..+...|...+.-.+..+..+|+.|..++.+++|.
T Consensus 424 aa~-qk~~~egekk~~q~-~da--------erl---l~agie~pd~vffc~iepps~~k~~d~ehale~lqredpslkir 490 (753)
T KOG0464|consen 424 AAA-QKAAGEGEKKHLQN-KDA--------ERL---LFAGIEIPDAVFFCCIEPPSLRKLNDFEHALECLQREDPSLKIR 490 (753)
T ss_pred HHH-HHhhccchhhccCC-ccc--------cce---eeecccCCCceEEEeccCcccccchhHHHHHHHHhccCCceeEE
Confidence 111 11111100000000 000 000 0122332 34666788888888999999999999988887765
Q ss_pred E
Q 001745 834 L 834 (1018)
Q Consensus 834 ~ 834 (1018)
.
T Consensus 491 ~ 491 (753)
T KOG0464|consen 491 F 491 (753)
T ss_pred e
Confidence 4
No 220
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.69 E-value=3.6e-16 Score=148.43 Aligned_cols=153 Identities=27% Similarity=0.416 Sum_probs=110.1
Q ss_pred EEeCCCCCHHHHHHHHHcCccc-ccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHH-------HHHhhhccCC
Q 001745 496 IMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGA-------MRARGARVTD 567 (1018)
Q Consensus 496 ImGhvdvGKTTLLnrL~~~~v~-~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~-------~r~rg~~~AD 567 (1018)
|+|++|+|||||+++|.+.... .....++|.....+.... . ....+.||||||+..+.. .....+..+|
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d 77 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWEL--G-PLGPVVLIDTPGIDEAGGLGREREELARRVLERAD 77 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEe--c-CCCcEEEEECCCCCccccchhhHHHHHHHHHHhCC
Confidence 5899999999999999976554 555566666654444332 1 146799999999876643 3345678999
Q ss_pred EEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHH-HHhcCCCCCCCCCCCcEEEEecCCCCChH
Q 001745 568 IAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQE-LSSIGLMPEDWGGDIPMVQISALKGEKVD 646 (1018)
Q Consensus 568 iVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~e-L~e~gl~~e~~g~~vpiVeISAktGeGId 646 (1018)
++++|+|+.+........++......+.|+++++||+|+........... ..... ......+++++||+++.|++
T Consensus 78 ~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~sa~~~~~v~ 153 (163)
T cd00880 78 LILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEELLELRLLIL----LLLLGLPVIAVSALTGEGID 153 (163)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHHHHHHHHHhhc----ccccCCceEEEeeeccCCHH
Confidence 99999999998777766656666778999999999999964332221110 11111 12235789999999999999
Q ss_pred HHHHHHHHH
Q 001745 647 DLLETIMLV 655 (1018)
Q Consensus 647 eLleaIl~l 655 (1018)
+++++|..+
T Consensus 154 ~l~~~l~~~ 162 (163)
T cd00880 154 ELREALIEA 162 (163)
T ss_pred HHHHHHHhh
Confidence 999998643
No 221
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.69 E-value=9.3e-16 Score=187.31 Aligned_cols=152 Identities=27% Similarity=0.396 Sum_probs=116.9
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcc-cccccCCceeeeeeEEEEEecCCceecEEEEeCCCccc--------hHHHHH
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA--------FGAMRA 560 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v-~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~--------F~~~r~ 560 (1018)
..++|+|+|++|+|||||+|+|.+.+. .....+|+|++...+...+ .+..+.||||||.+. |.....
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~----~~~~~~liDT~G~~~~~~~~~~~~~~~~~ 349 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEW----AGTDFKLVDTGGWEADVEGIDSAIASQAQ 349 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEE----CCEEEEEEeCCCcCCCCccHHHHHHHHHH
Confidence 457899999999999999999997654 3456788888754433332 345799999999653 445556
Q ss_pred hhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHhcCCCCCCCCCCCcEEEEecC
Q 001745 561 RGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (1018)
Q Consensus 561 rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~e~~g~~vpiVeISAk 640 (1018)
.++..+|++|+|+|+++++.....+++..++..++|+|+|+||+|+.... ....++...++ -..+++||+
T Consensus 350 ~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~--~~~~~~~~lg~--------~~~~~iSA~ 419 (712)
T PRK09518 350 IAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASE--YDAAEFWKLGL--------GEPYPISAM 419 (712)
T ss_pred HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccch--hhHHHHHHcCC--------CCeEEEECC
Confidence 67899999999999999998888888888888999999999999985421 12222223332 135799999
Q ss_pred CCCChHHHHHHHHHH
Q 001745 641 KGEKVDDLLETIMLV 655 (1018)
Q Consensus 641 tGeGIdeLleaIl~l 655 (1018)
+|.||++|+++|...
T Consensus 420 ~g~GI~eLl~~i~~~ 434 (712)
T PRK09518 420 HGRGVGDLLDEALDS 434 (712)
T ss_pred CCCCchHHHHHHHHh
Confidence 999999999998754
No 222
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.69 E-value=4.6e-16 Score=158.95 Aligned_cols=154 Identities=25% Similarity=0.279 Sum_probs=104.9
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVIL 571 (1018)
.+|+|+|..|+|||||+++|....+.....+ |... .+...+.+++....+.+|||||++.|..++...+..+|++++
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~--t~~~-~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~ll 78 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHP--TVFE-NYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILI 78 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCC--cccc-eEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEE
Confidence 4799999999999999999986665432222 2211 122233345666779999999999988777777899999999
Q ss_pred EEecCCCCChhHH--HHHHHHH--HcCCCEEEEEecCCCCCCC-------------hHHHHHHHHhcCCCCCCCCCCCcE
Q 001745 572 VVAADDGIRPQTN--EAIAHAK--AAGVPIVIAINKIDKDGAN-------------PERVMQELSSIGLMPEDWGGDIPM 634 (1018)
Q Consensus 572 VVDAddGv~~QT~--E~I~~ak--~~gIPIIVVINKiDL~~a~-------------~erv~~eL~e~gl~~e~~g~~vpi 634 (1018)
++|+++....+.. .++..+. ..++|+|+++||+|+.... .++........+ ..++
T Consensus 79 v~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 150 (187)
T cd04129 79 GFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIG--------AKKY 150 (187)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhC--------CcEE
Confidence 9999874322221 1222222 2368999999999984321 111111112221 2479
Q ss_pred EEEecCCCCChHHHHHHHHHHH
Q 001745 635 VQISALKGEKVDDLLETIMLVA 656 (1018)
Q Consensus 635 VeISAktGeGIdeLleaIl~la 656 (1018)
|+|||++|.||+++|+++....
T Consensus 151 ~e~Sa~~~~~v~~~f~~l~~~~ 172 (187)
T cd04129 151 MECSALTGEGVDDVFEAATRAA 172 (187)
T ss_pred EEccCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999997543
No 223
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.69 E-value=9.2e-16 Score=148.17 Aligned_cols=156 Identities=26% Similarity=0.341 Sum_probs=107.4
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCccccc-ccCCceeeeeeEEEEEecCCceecEEEEeCCCccchH--------HHHH
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAA-EAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFG--------AMRA 560 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v~~~-e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~--------~~r~ 560 (1018)
+..+|+++|.+|+|||||+++|.+..+... ....+|....... +......+.||||||...+. ....
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 77 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGI----YTDDDAQIIFVDTPGIHKPKKKLGERMVKAAW 77 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEE----EEcCCeEEEEEECCCCCcchHHHHHHHHHHHH
Confidence 356899999999999999999998765422 2223333221111 12234679999999975433 2344
Q ss_pred hhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHhcCCCCCCCCCCCcEEEEecC
Q 001745 561 RGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (1018)
Q Consensus 561 rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~e~~g~~vpiVeISAk 640 (1018)
..+..+|++++|+|+.+.........+..+...+.|+++++||+|+.. ..+.+...+....- .....+++++|++
T Consensus 78 ~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~-~~~~~~~~~~~~~~----~~~~~~~~~~s~~ 152 (168)
T cd04163 78 SALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVK-DKEDLLPLLEKLKE----LGPFAEIFPISAL 152 (168)
T ss_pred HHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccc-cHHHHHHHHHHHHh----ccCCCceEEEEec
Confidence 567899999999999987656666666777777899999999999963 12222222222111 0113679999999
Q ss_pred CCCChHHHHHHHHH
Q 001745 641 KGEKVDDLLETIML 654 (1018)
Q Consensus 641 tGeGIdeLleaIl~ 654 (1018)
++.|+++|++.|..
T Consensus 153 ~~~~~~~l~~~l~~ 166 (168)
T cd04163 153 KGENVDELLEEIVK 166 (168)
T ss_pred cCCChHHHHHHHHh
Confidence 99999999999853
No 224
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.68 E-value=2.4e-16 Score=156.12 Aligned_cols=150 Identities=25% Similarity=0.252 Sum_probs=98.9
Q ss_pred EEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccc-------hHHHHHhhhccCCE
Q 001745 496 IMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA-------FGAMRARGARVTDI 568 (1018)
Q Consensus 496 ImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~-------F~~~r~rg~~~ADi 568 (1018)
|+|++|+|||||+++|.+........+++|++.....+.+ . .+..+.||||||+.. +.......+..+|+
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~--~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 77 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEV--P-DGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADA 77 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEc--C-CCCeEEEEeccccchhhhcCCCccHHHHHHHhccCE
Confidence 5899999999999999987765556667777665444332 2 146799999999732 12223445778999
Q ss_pred EEEEEecCCCC-----Ch--hHHHHHHHHH----------HcCCCEEEEEecCCCCCCChHHHHHHHHhcCCCCCCCCCC
Q 001745 569 AVIVVAADDGI-----RP--QTNEAIAHAK----------AAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGD 631 (1018)
Q Consensus 569 VILVVDAddGv-----~~--QT~E~I~~ak----------~~gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~e~~g~~ 631 (1018)
+++|+|+++.. .. +...+...+. ..+.|+++++||+|+.......... .... .....
T Consensus 78 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~-~~~~-----~~~~~ 151 (176)
T cd01881 78 ILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL-VREL-----ALEEG 151 (176)
T ss_pred EEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH-HHHH-----hcCCC
Confidence 99999998763 11 1111111111 1478999999999996432211110 0110 01124
Q ss_pred CcEEEEecCCCCChHHHHHHHHH
Q 001745 632 IPMVQISALKGEKVDDLLETIML 654 (1018)
Q Consensus 632 vpiVeISAktGeGIdeLleaIl~ 654 (1018)
.+++++||++|.|+++++++|..
T Consensus 152 ~~~~~~Sa~~~~gl~~l~~~l~~ 174 (176)
T cd01881 152 AEVVPISAKTEEGLDELIRAIYE 174 (176)
T ss_pred CCEEEEehhhhcCHHHHHHHHHh
Confidence 67999999999999999998864
No 225
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.68 E-value=8.4e-16 Score=153.94 Aligned_cols=146 Identities=18% Similarity=0.236 Sum_probs=101.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEEE
Q 001745 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIV 572 (1018)
Q Consensus 493 kVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVILV 572 (1018)
+|+++|+.++|||||+.++....+..... ++ .+.+...+.+++....+.||||+|++.+ .+++.+|++++|
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~~~~--~~--~~~~~~~i~~~~~~~~l~i~D~~g~~~~-----~~~~~~~~~ilv 72 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQLES--PE--GGRFKKEVLVDGQSHLLLIRDEGGAPDA-----QFASWVDAVIFV 72 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCCC--CC--ccceEEEEEECCEEEEEEEEECCCCCch-----hHHhcCCEEEEE
Confidence 69999999999999999998776643321 22 2233344556777788999999999753 356789999999
Q ss_pred EecCCCCChhH-HHHHHHHHH----cCCCEEEEEecCCCCCCChHHHH----HHHHhcCCCCCCCCCCCcEEEEecCCCC
Q 001745 573 VAADDGIRPQT-NEAIAHAKA----AGVPIVIAINKIDKDGANPERVM----QELSSIGLMPEDWGGDIPMVQISALKGE 643 (1018)
Q Consensus 573 VDAddGv~~QT-~E~I~~ak~----~gIPIIVVINKiDL~~a~~erv~----~eL~e~gl~~e~~g~~vpiVeISAktGe 643 (1018)
+|.++....+. ..++..+.. .++|+++++||+|+.......+. .++... ...++|++|||++|.
T Consensus 73 ~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~-------~~~~~~~e~SAk~~~ 145 (158)
T cd04103 73 FSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCAD-------MKRCSYYETCATYGL 145 (158)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHH-------hCCCcEEEEecCCCC
Confidence 99998554444 222333322 45799999999998432111111 122221 023689999999999
Q ss_pred ChHHHHHHHHH
Q 001745 644 KVDDLLETIML 654 (1018)
Q Consensus 644 GIdeLleaIl~ 654 (1018)
||+++|+.+..
T Consensus 146 ~i~~~f~~~~~ 156 (158)
T cd04103 146 NVERVFQEAAQ 156 (158)
T ss_pred CHHHHHHHHHh
Confidence 99999998863
No 226
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.68 E-value=2.3e-16 Score=160.62 Aligned_cols=156 Identities=24% Similarity=0.266 Sum_probs=116.1
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCE
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADi 568 (1018)
.+..+|+++|..|+|||||+++|....... ...|.++....+.+ .++.++|||.+|+..|...|..++..+|+
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~---~~pT~g~~~~~i~~----~~~~~~~~d~gG~~~~~~~w~~y~~~~~~ 84 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE---TIPTIGFNIEEIKY----KGYSLTIWDLGGQESFRPLWKSYFQNADG 84 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE---EEEESSEEEEEEEE----TTEEEEEEEESSSGGGGGGGGGGHTTESE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc---cCcccccccceeee----CcEEEEEEeccccccccccceeeccccce
Confidence 566789999999999999999998765432 22355555555444 45789999999999999999999999999
Q ss_pred EEEEEecCCCC-ChhHHHHHHHHH----HcCCCEEEEEecCCCCCC-ChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCC
Q 001745 569 AVIVVAADDGI-RPQTNEAIAHAK----AAGVPIVIAINKIDKDGA-NPERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (1018)
Q Consensus 569 VILVVDAddGv-~~QT~E~I~~ak----~~gIPIIVVINKiDL~~a-~~erv~~eL~e~gl~~e~~g~~vpiVeISAktG 642 (1018)
+|+|+|+++.- ..+..+.+..+. ..++|++|++||+|++++ +.+++...+.-..+. ....+.++.|||++|
T Consensus 85 iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~---~~~~~~v~~~sa~~g 161 (175)
T PF00025_consen 85 IIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLK---NKRPWSVFSCSAKTG 161 (175)
T ss_dssp EEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTT---SSSCEEEEEEBTTTT
T ss_pred eEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcc---cCCceEEEeeeccCC
Confidence 99999999732 233343333322 247899999999999764 444454444333332 123578999999999
Q ss_pred CChHHHHHHHHH
Q 001745 643 EKVDDLLETIML 654 (1018)
Q Consensus 643 eGIdeLleaIl~ 654 (1018)
+|+.+.++||..
T Consensus 162 ~Gv~e~l~WL~~ 173 (175)
T PF00025_consen 162 EGVDEGLEWLIE 173 (175)
T ss_dssp BTHHHHHHHHHH
T ss_pred cCHHHHHHHHHh
Confidence 999999999974
No 227
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=2.8e-16 Score=155.71 Aligned_cols=153 Identities=22% Similarity=0.284 Sum_probs=121.8
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEE
Q 001745 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (1018)
Q Consensus 491 ~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVI 570 (1018)
-++|+++|..|+|||+|+.++...-+..+. |.|+++++.-..+.+.+...++++|||+|+|+|++....+++.++.+|
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgq--gatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahali 84 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQ--GATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCC--CceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEE
Confidence 468999999999999999999988876553 567777777777777899999999999999999999999999999999
Q ss_pred EEEecCCC----CChhHHHHHHHHHHcCCCEEEEEecCCCCCC--ChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCC
Q 001745 571 IVVAADDG----IRPQTNEAIAHAKAAGVPIVIAINKIDKDGA--NPERVMQELSSIGLMPEDWGGDIPMVQISALKGEK 644 (1018)
Q Consensus 571 LVVDAddG----v~~QT~E~I~~ak~~gIPIIVVINKiDL~~a--~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGeG 644 (1018)
||+|++.. ..|.|...|......++--|+|+||+|+.+. -++++-.++.+.. +.-|+++||+..+|
T Consensus 85 lvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~q--------dmyfletsakea~n 156 (213)
T KOG0095|consen 85 LVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQ--------DMYFLETSAKEADN 156 (213)
T ss_pred EEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhh--------hhhhhhhcccchhh
Confidence 99999973 3455555555555556668999999999542 2334444444432 24588999999999
Q ss_pred hHHHHHHHH
Q 001745 645 VDDLLETIM 653 (1018)
Q Consensus 645 IdeLleaIl 653 (1018)
++.||..+.
T Consensus 157 ve~lf~~~a 165 (213)
T KOG0095|consen 157 VEKLFLDLA 165 (213)
T ss_pred HHHHHHHHH
Confidence 999998876
No 228
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=99.68 E-value=2.3e-16 Score=174.13 Aligned_cols=223 Identities=23% Similarity=0.331 Sum_probs=159.7
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccc--------------cCCceeeeeeEEEEEe---------------------
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAE--------------AGGITQGIGAYKVQVP--------------------- 536 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e--------------~gGiTqdIga~~V~i~--------------------- 536 (1018)
.+|+++|.+|+||||||..|.+.....+. +.|-|..++..-+-+.
T Consensus 134 ~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvkI 213 (641)
T KOG0463|consen 134 ARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVKI 213 (641)
T ss_pred EEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccceee
Confidence 47999999999999999888654332211 1122222211111000
Q ss_pred cCCceecEEEEeCCCccchHHHHHhhh--ccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHH-
Q 001745 537 VDGKLQPCVFLDTPGHEAFGAMRARGA--RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPER- 613 (1018)
Q Consensus 537 ~dgk~~~ItfIDTPGHE~F~~~r~rg~--~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~er- 613 (1018)
.......++|||.+|||.|.+....++ ...|..+|++-+.-|+...|.|++.++...++|+++|++|||.+.++..+
T Consensus 214 ce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDMCPANiLqE 293 (641)
T KOG0463|consen 214 CEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDMCPANILQE 293 (641)
T ss_pred ccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeeccCcHHHHHH
Confidence 112234699999999999998887777 67899999999999999999999999999999999999999997665422
Q ss_pred HHHHHH----hcCCC---------------CCCC--CCCCcEEEEecCCCCChHHHHHHHHHHHHHhhhhcCCCCCCcce
Q 001745 614 VMQELS----SIGLM---------------PEDW--GGDIPMVQISALKGEKVDDLLETIMLVAELQELKANPHRNAKGT 672 (1018)
Q Consensus 614 v~~eL~----e~gl~---------------~e~~--g~~vpiVeISAktGeGIdeLleaIl~lael~~lk~~p~r~~~g~ 672 (1018)
.+..+. ..+.. ..+| ..-||+|.+|..+|+|++-|...|..+..- ...+.+.++++.
T Consensus 294 tmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFLNlls~R--~~~~E~~PAeFQ 371 (641)
T KOG0463|consen 294 TMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFLNLLSLR--RQLNENDPAEFQ 371 (641)
T ss_pred HHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHHhhcCcc--cccccCCCccee
Confidence 121111 11100 0011 134899999999999998777666544322 233556788999
Q ss_pred EEEEeeecCCCcEEEEEeEeeEEecCCEEEEccc------eeEEEEEecc
Q 001745 673 VIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEA------FGKVRALFDD 716 (1018)
Q Consensus 673 ViEs~~dkg~G~VatglV~~GtLkvGD~Vv~G~~------~gKVRaI~~~ 716 (1018)
|.+++..+|.|+|+.+...+|+++.+|.+.+|+. ..-|++|+..
T Consensus 372 IDD~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd~~G~F~pI~iKSIHRK 421 (641)
T KOG0463|consen 372 IDDIYWVPGVGTVVSGTLLSGTIRLNDILLLGPDSNGDFMPIPIKSIHRK 421 (641)
T ss_pred ecceEecCCcceEeecceeeeeEEeccEEEecCCCCCCeeeeehhhhhhc
Confidence 9999999999999999999999999999999874 2356666544
No 229
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.67 E-value=7.8e-16 Score=143.62 Aligned_cols=148 Identities=26% Similarity=0.340 Sum_probs=108.3
Q ss_pred EEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEEEEec
Q 001745 496 IMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAA 575 (1018)
Q Consensus 496 ImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVILVVDA 575 (1018)
|+|++++|||||+++|........ ....|. +..+............++||||||+..+.......+..+|++++|+|+
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~-~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 78 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPE-EYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDV 78 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCc-ccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEEC
Confidence 589999999999999997665222 222343 555566555555677899999999999888888888999999999999
Q ss_pred CCCCChhHHHHH-----HHHHHcCCCEEEEEecCCCCCCChHHHHH---HHHhcCCCCCCCCCCCcEEEEecCCCCChHH
Q 001745 576 DDGIRPQTNEAI-----AHAKAAGVPIVIAINKIDKDGANPERVMQ---ELSSIGLMPEDWGGDIPMVQISALKGEKVDD 647 (1018)
Q Consensus 576 ddGv~~QT~E~I-----~~ak~~gIPIIVVINKiDL~~a~~erv~~---eL~e~gl~~e~~g~~vpiVeISAktGeGIde 647 (1018)
+++...+....+ ......++|+++++||+|+.......... ..... ...+++++||.++.|+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~--------~~~~~~~~s~~~~~~i~~ 150 (157)
T cd00882 79 TDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKE--------LGVPYFETSAKTGENVEE 150 (157)
T ss_pred cCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhh--------cCCcEEEEecCCCCChHH
Confidence 986544443322 33344688999999999996543332221 11111 247899999999999999
Q ss_pred HHHHHH
Q 001745 648 LLETIM 653 (1018)
Q Consensus 648 LleaIl 653 (1018)
++++|.
T Consensus 151 ~~~~l~ 156 (157)
T cd00882 151 LFEELA 156 (157)
T ss_pred HHHHHh
Confidence 999874
No 230
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.67 E-value=2.3e-15 Score=156.99 Aligned_cols=155 Identities=18% Similarity=0.146 Sum_probs=112.8
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEE
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiV 569 (1018)
...+|+++|++|+|||||++++....+.... ..|.+..++...+..++..+.+.+|||+|++.|..++..++..+|++
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~ 85 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKY--IPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCA 85 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCCCCC--CCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEE
Confidence 4478999999999999999988766554322 34555556666655577788999999999999999998889999999
Q ss_pred EEEEecCCCCChhHHHH-HHHHH--HcCCCEEEEEecCCCCCCCh-HHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCCh
Q 001745 570 VIVVAADDGIRPQTNEA-IAHAK--AAGVPIVIAINKIDKDGANP-ERVMQELSSIGLMPEDWGGDIPMVQISALKGEKV 645 (1018)
Q Consensus 570 ILVVDAddGv~~QT~E~-I~~ak--~~gIPIIVVINKiDL~~a~~-erv~~eL~e~gl~~e~~g~~vpiVeISAktGeGI 645 (1018)
|+|+|+++....+.... +..+. ..++|+++++||+|+..... .+........ .+.++++||++|.|+
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~---------~~~~~e~Sa~~~~~v 156 (215)
T PTZ00132 86 IIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRKK---------NLQYYDISAKSNYNF 156 (215)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHHHHc---------CCEEEEEeCCCCCCH
Confidence 99999987544333221 12221 24789999999999853221 2222222111 257899999999999
Q ss_pred HHHHHHHHHH
Q 001745 646 DDLLETIMLV 655 (1018)
Q Consensus 646 deLleaIl~l 655 (1018)
+++|.+|...
T Consensus 157 ~~~f~~ia~~ 166 (215)
T PTZ00132 157 EKPFLWLARR 166 (215)
T ss_pred HHHHHHHHHH
Confidence 9999998754
No 231
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.67 E-value=2.1e-15 Score=169.54 Aligned_cols=158 Identities=22% Similarity=0.232 Sum_probs=109.8
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCcc-------chHHHHHhh
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHE-------AFGAMRARG 562 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE-------~F~~~r~rg 562 (1018)
-...|+|+|.||+|||||+++|...+..+..++++|.+.....+.+. ....++||||||.- .+.....+.
T Consensus 157 ~~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~---~~~~~~i~D~PGli~ga~~~~gLg~~flrh 233 (335)
T PRK12299 157 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD---DYKSFVIADIPGLIEGASEGAGLGHRFLKH 233 (335)
T ss_pred ccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC---CCcEEEEEeCCCccCCCCccccHHHHHHHH
Confidence 34569999999999999999999877777777888988766655442 23469999999952 234445566
Q ss_pred hccCCEEEEEEecCCCCChhHHH-HHHHHHH-----cCCCEEEEEecCCCCCCChHHHHHHHHhcCCCCCCCCCCCcEEE
Q 001745 563 ARVTDIAVIVVAADDGIRPQTNE-AIAHAKA-----AGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQ 636 (1018)
Q Consensus 563 ~~~ADiVILVVDAddGv~~QT~E-~I~~ak~-----~gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~e~~g~~vpiVe 636 (1018)
+..+|++|+|||+++....+..+ ++..+.. .+.|+|+|+||+|+....... ...+... . ..+ ..++++
T Consensus 234 ie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~-~~~~~~~-~--~~~--~~~i~~ 307 (335)
T PRK12299 234 IERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEER-EKRAALE-L--AAL--GGPVFL 307 (335)
T ss_pred hhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHH-HHHHHHH-H--Hhc--CCCEEE
Confidence 78899999999998643222222 2233332 368999999999996432111 1111110 0 011 257999
Q ss_pred EecCCCCChHHHHHHHHHHH
Q 001745 637 ISALKGEKVDDLLETIMLVA 656 (1018)
Q Consensus 637 ISAktGeGIdeLleaIl~la 656 (1018)
+||++++||++|+++|....
T Consensus 308 iSAktg~GI~eL~~~L~~~l 327 (335)
T PRK12299 308 ISAVTGEGLDELLRALWELL 327 (335)
T ss_pred EEcCCCCCHHHHHHHHHHHH
Confidence 99999999999999997654
No 232
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=9.9e-16 Score=151.67 Aligned_cols=155 Identities=20% Similarity=0.161 Sum_probs=119.3
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEE
Q 001745 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (1018)
Q Consensus 491 ~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVI 570 (1018)
..++.|||+..+|||||+.++....+..... .|.+|.+....+.-..+...+++|||+|+|.|+.+...+++.++++|
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afv--sTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfi 98 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFV--STVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhcccccccee--eeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEE
Confidence 3589999999999999999999887765433 35555544443332345678999999999999999999999999999
Q ss_pred EEEecCCCCChh----HHHHHHHHHHcCCCEEEEEecCCCCCC---ChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCC
Q 001745 571 IVVAADDGIRPQ----TNEAIAHAKAAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (1018)
Q Consensus 571 LVVDAddGv~~Q----T~E~I~~ak~~gIPIIVVINKiDL~~a---~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGe 643 (1018)
|++|+++..... +.-.|++....+.|+|+|+||||+... ..++..+...++|+ .||++|||.+.
T Consensus 99 LmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGf---------efFEtSaK~Ni 169 (193)
T KOG0093|consen 99 LMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGF---------EFFETSAKENI 169 (193)
T ss_pred EEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhCh---------HHhhhcccccc
Confidence 999998743222 223334444568999999999999643 35666666666664 58999999999
Q ss_pred ChHHHHHHHHHHH
Q 001745 644 KVDDLLETIMLVA 656 (1018)
Q Consensus 644 GIdeLleaIl~la 656 (1018)
|+.++|+.++...
T Consensus 170 nVk~~Fe~lv~~I 182 (193)
T KOG0093|consen 170 NVKQVFERLVDII 182 (193)
T ss_pred cHHHHHHHHHHHH
Confidence 9999999987654
No 233
>PRK11058 GTPase HflX; Provisional
Probab=99.64 E-value=2.7e-15 Score=173.35 Aligned_cols=150 Identities=24% Similarity=0.296 Sum_probs=107.0
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccc---------hHHHHHh
Q 001745 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA---------FGAMRAR 561 (1018)
Q Consensus 491 ~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~---------F~~~r~r 561 (1018)
.|.|+|+|.+|+|||||+|+|.+..+......++|.+.....+.+ .+ ...+.||||||... |... ..
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l--~~-~~~~~l~DTaG~~r~lp~~lve~f~~t-l~ 272 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDV--AD-VGETVLADTVGFIRHLPHDLVAAFKAT-LQ 272 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEe--CC-CCeEEEEecCcccccCCHHHHHHHHHH-HH
Confidence 378999999999999999999988776667778888776555544 22 23689999999732 3332 34
Q ss_pred hhccCCEEEEEEecCCCCChhHH----HHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHhcCCCCCCCCCCCc-EEE
Q 001745 562 GARVTDIAVIVVAADDGIRPQTN----EAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIP-MVQ 636 (1018)
Q Consensus 562 g~~~ADiVILVVDAddGv~~QT~----E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~e~~g~~vp-iVe 636 (1018)
.+..+|++|+|+|+++....... +.+..+...++|+|+|+||+|+.......+. .... ..+ +++
T Consensus 273 ~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~~~~--~~~~---------~~~~~v~ 341 (426)
T PRK11058 273 ETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEPRID--RDEE---------NKPIRVW 341 (426)
T ss_pred HhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhHHHH--HHhc---------CCCceEE
Confidence 46889999999999986543332 3344444457999999999999542111111 1111 123 588
Q ss_pred EecCCCCChHHHHHHHHHH
Q 001745 637 ISALKGEKVDDLLETIMLV 655 (1018)
Q Consensus 637 ISAktGeGIdeLleaIl~l 655 (1018)
+||++|.||++|+++|...
T Consensus 342 ISAktG~GIdeL~e~I~~~ 360 (426)
T PRK11058 342 LSAQTGAGIPLLFQALTER 360 (426)
T ss_pred EeCCCCCCHHHHHHHHHHH
Confidence 9999999999999999754
No 234
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=8.6e-16 Score=160.09 Aligned_cols=155 Identities=20% Similarity=0.242 Sum_probs=120.2
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEE
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiV 569 (1018)
.-++|+++|++++|||-||.++..+.+..... .|+++.+.+..+.++++..+.+||||+|+|+|..+...+++.|-++
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnEF~~~Sk--sTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGA 90 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSLESK--STIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 90 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhcccccCcccc--cceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhccccee
Confidence 45789999999999999999999888765543 4777778787788899999999999999999999999999999999
Q ss_pred EEEEecCCCCChhHH-HHHHHHHH---cCCCEEEEEecCCCCC--CChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCC
Q 001745 570 VIVVAADDGIRPQTN-EAIAHAKA---AGVPIVIAINKIDKDG--ANPERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (1018)
Q Consensus 570 ILVVDAddGv~~QT~-E~I~~ak~---~gIPIIVVINKiDL~~--a~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGe 643 (1018)
+||||++...+.+.. .++..++. .++++++|+||+||.. +-+.+--..+++.. ...|+++||+.+.
T Consensus 91 llVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~--------~l~f~EtSAl~~t 162 (222)
T KOG0087|consen 91 LLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKE--------GLFFLETSALDAT 162 (222)
T ss_pred EEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhc--------CceEEEecccccc
Confidence 999999875443332 23334433 4788999999999954 11222222222211 2569999999999
Q ss_pred ChHHHHHHHHH
Q 001745 644 KVDDLLETIML 654 (1018)
Q Consensus 644 GIdeLleaIl~ 654 (1018)
|+++.|+.++.
T Consensus 163 NVe~aF~~~l~ 173 (222)
T KOG0087|consen 163 NVEKAFERVLT 173 (222)
T ss_pred cHHHHHHHHHH
Confidence 99999988764
No 235
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.64 E-value=3.5e-15 Score=167.28 Aligned_cols=155 Identities=23% Similarity=0.238 Sum_probs=107.2
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccc-------hHHHHHhh
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA-------FGAMRARG 562 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~-------F~~~r~rg 562 (1018)
-...|+|+|.+|+|||||+++|...+..+..++.+|.+.....+.+ + ....++||||||+.. +.....+.
T Consensus 156 ~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~--~-~~~~~~i~D~PGli~~a~~~~gLg~~flrh 232 (329)
T TIGR02729 156 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRV--D-DGRSFVIADIPGLIEGASEGAGLGHRFLKH 232 (329)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEe--C-CceEEEEEeCCCcccCCcccccHHHHHHHH
Confidence 4457999999999999999999987766667777887765555543 2 235799999999632 33344555
Q ss_pred hccCCEEEEEEecCCCC---ChhHH-HHHHHHHH-----cCCCEEEEEecCCCCCCC-hHHHHHHHHhcCCCCCCCCCCC
Q 001745 563 ARVTDIAVIVVAADDGI---RPQTN-EAIAHAKA-----AGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDI 632 (1018)
Q Consensus 563 ~~~ADiVILVVDAddGv---~~QT~-E~I~~ak~-----~gIPIIVVINKiDL~~a~-~erv~~eL~e~gl~~e~~g~~v 632 (1018)
+..+|++|+|+|+++.- ..+.. .+.+.+.. .+.|+|||+||+|+.... .+++.+++.+. + ..
T Consensus 233 ierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~------~--~~ 304 (329)
T TIGR02729 233 IERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKA------L--GK 304 (329)
T ss_pred HHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHH------c--CC
Confidence 67899999999998641 11122 22222222 368999999999996432 22222333221 1 25
Q ss_pred cEEEEecCCCCChHHHHHHHHHH
Q 001745 633 PMVQISALKGEKVDDLLETIMLV 655 (1018)
Q Consensus 633 piVeISAktGeGIdeLleaIl~l 655 (1018)
+++++||++++||++|+++|...
T Consensus 305 ~vi~iSAktg~GI~eL~~~I~~~ 327 (329)
T TIGR02729 305 PVFPISALTGEGLDELLYALAEL 327 (329)
T ss_pred cEEEEEccCCcCHHHHHHHHHHH
Confidence 79999999999999999998643
No 236
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=1.1e-15 Score=151.98 Aligned_cols=156 Identities=22% Similarity=0.265 Sum_probs=116.5
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEE
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiV 569 (1018)
.-++++++|+.|.|||+||.+|.+.++... ...|+++.+..-.+.+.++..++++|||+|+|+|......+++.|-++
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~kfkDd--ssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGA 85 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENKFKDD--SSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 85 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhhhccc--ccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence 446899999999999999999998877533 345777766666666788889999999999999999999999999999
Q ss_pred EEEEecCCCCChhH-HHHHHHHH---HcCCCEEEEEecCCCCCCChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCCh
Q 001745 570 VIVVAADDGIRPQT-NEAIAHAK---AAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKV 645 (1018)
Q Consensus 570 ILVVDAddGv~~QT-~E~I~~ak---~~gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGeGI 645 (1018)
+||+|++....... -.++..++ ..++-+|+++||.||.. ++.+..++...+..+. .+.+.++||+||+|+
T Consensus 86 lLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~---~R~VtflEAs~FaqEn---el~flETSa~TGeNV 159 (214)
T KOG0086|consen 86 LLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDP---EREVTFLEASRFAQEN---ELMFLETSALTGENV 159 (214)
T ss_pred EEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcCh---hhhhhHHHHHhhhccc---ceeeeeecccccccH
Confidence 99999987332221 12223333 34566899999999943 3333333333333332 467899999999999
Q ss_pred HHHHHHHH
Q 001745 646 DDLLETIM 653 (1018)
Q Consensus 646 deLleaIl 653 (1018)
++.|-...
T Consensus 160 EEaFl~c~ 167 (214)
T KOG0086|consen 160 EEAFLKCA 167 (214)
T ss_pred HHHHHHHH
Confidence 99886554
No 237
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.64 E-value=2.2e-15 Score=149.27 Aligned_cols=155 Identities=22% Similarity=0.256 Sum_probs=119.2
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVIL 571 (1018)
++.+|+|++++|||+|+-+|..+.+..++. +|+++++.--.+++.|....+.||||+|+|.|+.+...+++.++++|+
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYi--tTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~v 86 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYI--TTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIV 86 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceE--EEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEE
Confidence 457899999999999999999887765544 466665555555667889999999999999999999999999999999
Q ss_pred EEecCCCCChhH-HHHHHHHHH--cCCCEEEEEecCCCCCC---ChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCCh
Q 001745 572 VVAADDGIRPQT-NEAIAHAKA--AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKV 645 (1018)
Q Consensus 572 VVDAddGv~~QT-~E~I~~ak~--~gIPIIVVINKiDL~~a---~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGeGI 645 (1018)
|||++++-.... ..+++.++. ..+|-++|+||.|.++. ..+.......+.+ +.+|++||+...|+
T Consensus 87 VYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mg---------ie~FETSaKe~~Nv 157 (198)
T KOG0079|consen 87 VYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMG---------IELFETSAKENENV 157 (198)
T ss_pred EEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceeeehHHHHHHHHhcC---------chheehhhhhcccc
Confidence 999998654332 333333332 25788999999999753 2333344443433 67899999999999
Q ss_pred HHHHHHHHHHHH
Q 001745 646 DDLLETIMLVAE 657 (1018)
Q Consensus 646 deLleaIl~lae 657 (1018)
+..|.-|..+..
T Consensus 158 E~mF~cit~qvl 169 (198)
T KOG0079|consen 158 EAMFHCITKQVL 169 (198)
T ss_pred hHHHHHHHHHHH
Confidence 999998876543
No 238
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.63 E-value=9.7e-16 Score=166.02 Aligned_cols=148 Identities=24% Similarity=0.398 Sum_probs=107.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccc------------------cCCceeeeeeEEEEEecCCceecEEEEeCCCccc
Q 001745 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAE------------------AGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA 554 (1018)
Q Consensus 493 kVaImGhvdvGKTTLLnrL~~~~v~~~e------------------~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~ 554 (1018)
+|+|+||+|+|||||+++|......... ..++|.... ...+ .+.++.++|||||||..
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~--~~~~--~~~~~~i~liDtPG~~~ 76 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTS--VAPL--EWKGHKINLIDTPGYAD 76 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccce--eEEE--EECCEEEEEEECcCHHH
Confidence 4899999999999999999743211110 112332221 2222 23457899999999999
Q ss_pred hHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHhcCCCCCCCCCCCcE
Q 001745 555 FGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPM 634 (1018)
Q Consensus 555 F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~e~~g~~vpi 634 (1018)
|...+..++..+|++|+|+|++++...++...+..+...++|+++++||+|+...+.......+... + +..+-.
T Consensus 77 f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~~~~~~~~~l~~~-~-----~~~~~~ 150 (268)
T cd04170 77 FVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERADFDKTLAALQEA-F-----GRPVVP 150 (268)
T ss_pred HHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCCCHHHHHHHHHHH-h-----CCCeEE
Confidence 9999999999999999999999999999999999998899999999999999887777777776553 1 111223
Q ss_pred EEEecCCCCChHHHHH
Q 001745 635 VQISALKGEKVDDLLE 650 (1018)
Q Consensus 635 VeISAktGeGIdeLle 650 (1018)
+.++..+|.|+..+++
T Consensus 151 ~~ip~~~~~~~~~~vd 166 (268)
T cd04170 151 LQLPIGEGDDFKGVVD 166 (268)
T ss_pred EEecccCCCceeEEEE
Confidence 4445666666644443
No 239
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.62 E-value=7.3e-15 Score=168.16 Aligned_cols=159 Identities=21% Similarity=0.188 Sum_probs=110.2
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccc-------hHHHHHhhh
Q 001745 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA-------FGAMRARGA 563 (1018)
Q Consensus 491 ~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~-------F~~~r~rg~ 563 (1018)
-.-|+|+|.||+|||||+|+|...+..+...+++|++.....+.+. ....+.|+||||... +.....+.+
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~---~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i 235 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVD---DERSFVVADIPGLIEGASEGAGLGIRFLKHL 235 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeC---CCcEEEEEeCCCccccccchhhHHHHHHHHH
Confidence 3459999999999999999999888777888899988776665542 234699999999432 333344668
Q ss_pred ccCCEEEEEEecCC----CCChhHHHHHHHHHH-----cCCCEEEEEecCCCCCCChHHHHHHHHhcCCCCCCCCCCCcE
Q 001745 564 RVTDIAVIVVAADD----GIRPQTNEAIAHAKA-----AGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPM 634 (1018)
Q Consensus 564 ~~ADiVILVVDAdd----Gv~~QT~E~I~~ak~-----~gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~e~~g~~vpi 634 (1018)
..+|++++|+|++. ....+...+++.+.. .+.|+|+|+||+|+... ..+...+..+. ..++...++
T Consensus 236 ~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~--~el~~~l~~l~---~~~~~~~~V 310 (390)
T PRK12298 236 ERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE--EEAEERAKAIV---EALGWEGPV 310 (390)
T ss_pred HhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh--HHHHHHHHHHH---HHhCCCCCE
Confidence 89999999999872 122222333344433 36899999999999532 22222222110 001112468
Q ss_pred EEEecCCCCChHHHHHHHHHHHH
Q 001745 635 VQISALKGEKVDDLLETIMLVAE 657 (1018)
Q Consensus 635 VeISAktGeGIdeLleaIl~lae 657 (1018)
+++||+++.||++|+++|.....
T Consensus 311 i~ISA~tg~GIdeLl~~I~~~L~ 333 (390)
T PRK12298 311 YLISAASGLGVKELCWDLMTFIE 333 (390)
T ss_pred EEEECCCCcCHHHHHHHHHHHhh
Confidence 99999999999999999986554
No 240
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.62 E-value=1.4e-14 Score=151.09 Aligned_cols=156 Identities=21% Similarity=0.329 Sum_probs=122.5
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCc--ccccccCCceeeeeeEEEEEecCCceecEEEEeCCC----------ccchHH
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTK--VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG----------HEAFGA 557 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~--v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPG----------HE~F~~ 557 (1018)
..+-|+++|.+|+|||||+|+|++.+ ...+..+|.||.+.+|.+. + .+.|+|.|| .+.+..
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~----~---~~~lVDlPGYGyAkv~k~~~e~w~~ 95 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVD----D---ELRLVDLPGYGYAKVPKEVKEKWKK 95 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEec----C---cEEEEeCCCcccccCCHHHHHHHHH
Confidence 56789999999999999999999866 5577889999999988864 2 389999999 456667
Q ss_pred HHHhhhc---cCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCC-hHHHHHHHH-hcCCCCCCCCCCC
Q 001745 558 MRARGAR---VTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN-PERVMQELS-SIGLMPEDWGGDI 632 (1018)
Q Consensus 558 ~r~rg~~---~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~-~erv~~eL~-e~gl~~e~~g~~v 632 (1018)
+...|+. .-.++++++|+.+++...+.+.++.+...++|++|++||+|+...+ ..+...... ...+... | ..
T Consensus 96 ~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~-~--~~ 172 (200)
T COG0218 96 LIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPP-D--DQ 172 (200)
T ss_pred HHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCC-c--cc
Confidence 7777772 3578999999999999999999999999999999999999996532 233333333 2222221 1 12
Q ss_pred cEEEEecCCCCChHHHHHHHHHH
Q 001745 633 PMVQISALKGEKVDDLLETIMLV 655 (1018)
Q Consensus 633 piVeISAktGeGIdeLleaIl~l 655 (1018)
.++..|+.++.|+++|...|...
T Consensus 173 ~~~~~ss~~k~Gi~~l~~~i~~~ 195 (200)
T COG0218 173 WVVLFSSLKKKGIDELKAKILEW 195 (200)
T ss_pred eEEEEecccccCHHHHHHHHHHH
Confidence 28889999999999999988754
No 241
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.62 E-value=9.1e-15 Score=141.86 Aligned_cols=151 Identities=23% Similarity=0.370 Sum_probs=103.0
Q ss_pred EEEEeCCCCCHHHHHHHHHcCcccc--cccCCceeeeeeEEEEEecCCceecEEEEeCCCccc----------hHHHHHh
Q 001745 494 LTIMGHVDHGKTTLLDHIRKTKVAA--AEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA----------FGAMRAR 561 (1018)
Q Consensus 494 VaImGhvdvGKTTLLnrL~~~~v~~--~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~----------F~~~r~r 561 (1018)
|+++|++|+|||||++.|.+..... ....+.|..+..+. .++ .++||||||+.. |......
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~----~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 74 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFN----VND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEE 74 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEE----ccC---eEEEecCCCccccccCHHHHHHHHHHHHH
Confidence 7999999999999999999544332 22234444332222 122 799999999643 3444444
Q ss_pred hh---ccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCCh-HHHHHHHHhcCCCCCCCCCCCcEEEE
Q 001745 562 GA---RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANP-ERVMQELSSIGLMPEDWGGDIPMVQI 637 (1018)
Q Consensus 562 g~---~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~-erv~~eL~e~gl~~e~~g~~vpiVeI 637 (1018)
++ ...+++++++|.++..+....+.++.+...+.|+++++||+|+..... ......+... +.. +....+++++
T Consensus 75 ~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~-l~~--~~~~~~~~~~ 151 (170)
T cd01876 75 YLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKE-LKL--FEIDPPIILF 151 (170)
T ss_pred HHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHH-HHh--ccCCCceEEE
Confidence 44 346789999999887777777778888888899999999999853221 1222222111 100 2234789999
Q ss_pred ecCCCCChHHHHHHHHH
Q 001745 638 SALKGEKVDDLLETIML 654 (1018)
Q Consensus 638 SAktGeGIdeLleaIl~ 654 (1018)
||+++.|+.+++++|..
T Consensus 152 Sa~~~~~~~~l~~~l~~ 168 (170)
T cd01876 152 SSLKGQGIDELRALIEK 168 (170)
T ss_pred ecCCCCCHHHHHHHHHH
Confidence 99999999999999864
No 242
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.62 E-value=1.2e-14 Score=167.82 Aligned_cols=153 Identities=25% Similarity=0.273 Sum_probs=107.2
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccc-------hHHHHHhhh
Q 001745 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA-------FGAMRARGA 563 (1018)
Q Consensus 491 ~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~-------F~~~r~rg~ 563 (1018)
..-|+|+|.+|+||||||++|++.+..+...+++|.+.....+.+. ....++||||||... +.....+.+
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~---~~~~~~laD~PGliega~~~~gLg~~fLrhi 234 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETD---DGRSFVMADIPGLIEGASEGVGLGHQFLRHI 234 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEe---CCceEEEEECCCCcccccccchHHHHHHHHH
Confidence 3469999999999999999999877666677888988776665542 135799999999521 223344556
Q ss_pred ccCCEEEEEEecCCC--CCh--hHHHHHHHHHH-----cCCCEEEEEecCCCCCCChHHHHHHHHhcCCCCCCCCCCCcE
Q 001745 564 RVTDIAVIVVAADDG--IRP--QTNEAIAHAKA-----AGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPM 634 (1018)
Q Consensus 564 ~~ADiVILVVDAddG--v~~--QT~E~I~~ak~-----~gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~e~~g~~vpi 634 (1018)
..+|++|+|||+++. ..+ +...+.+.+.. .+.|+|||+||+|+... ......+.+. + + .++
T Consensus 235 er~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--~e~l~~l~~~-l-----~--~~i 304 (424)
T PRK12297 235 ERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA--EENLEEFKEK-L-----G--PKV 304 (424)
T ss_pred hhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC--HHHHHHHHHH-h-----C--CcE
Confidence 779999999999753 111 22223333332 47899999999998432 2222222221 1 1 469
Q ss_pred EEEecCCCCChHHHHHHHHHHH
Q 001745 635 VQISALKGEKVDDLLETIMLVA 656 (1018)
Q Consensus 635 VeISAktGeGIdeLleaIl~la 656 (1018)
+++||++++|+++|+++|....
T Consensus 305 ~~iSA~tgeGI~eL~~~L~~~l 326 (424)
T PRK12297 305 FPISALTGQGLDELLYAVAELL 326 (424)
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999997543
No 243
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.62 E-value=2.8e-15 Score=149.60 Aligned_cols=134 Identities=26% Similarity=0.349 Sum_probs=104.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCC----ccchHHHHHhhhccCCE
Q 001745 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG----HEAFGAMRARGARVTDI 568 (1018)
Q Consensus 493 kVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPG----HE~F~~~r~rg~~~ADi 568 (1018)
+|.+||.+++|||||+++|.+.... ..-||.+.++. .+||||| +..|.......+..||+
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~----~~KTq~i~~~~------------~~IDTPGEyiE~~~~y~aLi~ta~dad~ 66 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIR----YKKTQAIEYYD------------NTIDTPGEYIENPRFYHALIVTAQDADV 66 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCC----cCccceeEecc------------cEEECChhheeCHHHHHHHHHHHhhCCE
Confidence 6999999999999999999886543 22466543221 4699999 44555555666789999
Q ss_pred EEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCC--CCChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCChH
Q 001745 569 AVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKD--GANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVD 646 (1018)
Q Consensus 569 VILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~--~a~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGeGId 646 (1018)
+++|.|+++.. ....-.++..++.|+|-|+||+|+. +++.++..+.|...|.. .+|++|+.+|+||+
T Consensus 67 V~ll~dat~~~---~~~pP~fa~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~--------~if~vS~~~~eGi~ 135 (143)
T PF10662_consen 67 VLLLQDATEPR---SVFPPGFASMFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVK--------EIFEVSAVTGEGIE 135 (143)
T ss_pred EEEEecCCCCC---ccCCchhhcccCCCEEEEEECccCccchhhHHHHHHHHHHcCCC--------CeEEEECCCCcCHH
Confidence 99999999742 2222345566789999999999998 67888888899888762 46999999999999
Q ss_pred HHHHHHH
Q 001745 647 DLLETIM 653 (1018)
Q Consensus 647 eLleaIl 653 (1018)
+|.++|.
T Consensus 136 eL~~~L~ 142 (143)
T PF10662_consen 136 ELKDYLE 142 (143)
T ss_pred HHHHHHh
Confidence 9999873
No 244
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.62 E-value=8.4e-15 Score=171.50 Aligned_cols=156 Identities=24% Similarity=0.203 Sum_probs=108.3
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCcc----c---hHHHHHhh
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHE----A---FGAMRARG 562 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE----~---F~~~r~rg 562 (1018)
-...|+|+|.+|+|||||+++|...+.....++++|++.....+.+ ....|+||||||.- . ......+.
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~----~~~~f~laDtPGliegas~g~gLg~~fLrh 233 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQA----GDTRFTVADVPGLIPGASEGKGLGLDFLRH 233 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEE----CCeEEEEEECCCCccccchhhHHHHHHHHH
Confidence 3467999999999999999999988777777888998776655543 23579999999942 1 12233456
Q ss_pred hccCCEEEEEEecCCC---CCh-hHH-----HHHHHH----------HHcCCCEEEEEecCCCCCCCh--HHHHHHHHhc
Q 001745 563 ARVTDIAVIVVAADDG---IRP-QTN-----EAIAHA----------KAAGVPIVIAINKIDKDGANP--ERVMQELSSI 621 (1018)
Q Consensus 563 ~~~ADiVILVVDAddG---v~~-QT~-----E~I~~a----------k~~gIPIIVVINKiDL~~a~~--erv~~eL~e~ 621 (1018)
+..+|++|+|||+++. ..+ +.. ++..+. ...+.|+|||+||+|++.... +.+...+...
T Consensus 234 ieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~ 313 (500)
T PRK12296 234 IERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEAR 313 (500)
T ss_pred HHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHc
Confidence 7889999999999752 111 111 122222 234789999999999964321 1112222221
Q ss_pred CCCCCCCCCCCcEEEEecCCCCChHHHHHHHHHHHHH
Q 001745 622 GLMPEDWGGDIPMVQISALKGEKVDDLLETIMLVAEL 658 (1018)
Q Consensus 622 gl~~e~~g~~vpiVeISAktGeGIdeLleaIl~lael 658 (1018)
.+++|+|||++++||++|+++|..+...
T Consensus 314 ---------g~~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 314 ---------GWPVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred ---------CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 2579999999999999999999866543
No 245
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.62 E-value=5.9e-15 Score=181.04 Aligned_cols=151 Identities=18% Similarity=0.258 Sum_probs=112.3
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHH----------HH
Q 001745 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAM----------RA 560 (1018)
Q Consensus 491 ~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~----------r~ 560 (1018)
..+|+++|++|+|||||+|+|++.+...+..+|+|.+.....+ ...+..+++|||||+..|... ..
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~----~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~ 78 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQF----STTDHQVTLVDLPGTYSLTTISSQTSLDEQIAC 78 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEE----EcCceEEEEEECCCccccccccccccHHHHHHH
Confidence 4689999999999999999999887777788899986433332 345568999999999877531 11
Q ss_pred hhh--ccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCC-ChHHHHHHHHhcCCCCCCCCCCCcEEEE
Q 001745 561 RGA--RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGA-NPERVMQELSSIGLMPEDWGGDIPMVQI 637 (1018)
Q Consensus 561 rg~--~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a-~~erv~~eL~e~gl~~e~~g~~vpiVeI 637 (1018)
.++ ..+|++|+|+|+++.. +......++...++|+|+++||+|+.+. ......+.+.+. + .+|++++
T Consensus 79 ~~l~~~~aD~vI~VvDat~le--r~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~------L--G~pVvpi 148 (772)
T PRK09554 79 HYILSGDADLLINVVDASNLE--RNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSAR------L--GCPVIPL 148 (772)
T ss_pred HHHhccCCCEEEEEecCCcch--hhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHHH------h--CCCEEEE
Confidence 222 4789999999998743 3344556677789999999999998532 222223333331 1 3689999
Q ss_pred ecCCCCChHHHHHHHHHH
Q 001745 638 SALKGEKVDDLLETIMLV 655 (1018)
Q Consensus 638 SAktGeGIdeLleaIl~l 655 (1018)
||++|+|+++|++.+...
T Consensus 149 SA~~g~GIdeL~~~I~~~ 166 (772)
T PRK09554 149 VSTRGRGIEALKLAIDRH 166 (772)
T ss_pred EeecCCCHHHHHHHHHHh
Confidence 999999999999998754
No 246
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.61 E-value=1.5e-14 Score=148.40 Aligned_cols=160 Identities=24% Similarity=0.347 Sum_probs=127.1
Q ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHcCcccc-------cccCC---ceeeeeeEEEEEecCCceecEEEEeCCCccchH
Q 001745 487 LEDRPPVLTIMGHVDHGKTTLLDHIRKTKVAA-------AEAGG---ITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFG 556 (1018)
Q Consensus 487 l~~r~pkVaImGhvdvGKTTLLnrL~~~~v~~-------~e~gG---iTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~ 556 (1018)
...+..+|+|.|..++||||++.++....... ....+ +|..+.+....+. .+..+.|+|||||++|.
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~---~~~~v~LfgtPGq~RF~ 82 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELD---EDTGVHLFGTPGQERFK 82 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEc---CcceEEEecCCCcHHHH
Confidence 34567899999999999999999998654311 12223 6766666666552 33579999999999999
Q ss_pred HHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcC-CCEEEEEecCCCCCCChHHHHHHHHhcCCCCCCCCCCCcEE
Q 001745 557 AMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAG-VPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMV 635 (1018)
Q Consensus 557 ~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~g-IPIIVVINKiDL~~a~~erv~~eL~e~gl~~e~~g~~vpiV 635 (1018)
.||....+.++++|+++|.+.+......+.++.+...+ +|++|++||.|+.++.+.+..+++....+ ..+++|
T Consensus 83 fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~------~~~~vi 156 (187)
T COG2229 83 FMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALKLEL------LSVPVI 156 (187)
T ss_pred HHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHHhcc------CCCcee
Confidence 99999999999999999999877766678888888877 99999999999988766555555555443 247899
Q ss_pred EEecCCCCChHHHHHHHHHH
Q 001745 636 QISALKGEKVDDLLETIMLV 655 (1018)
Q Consensus 636 eISAktGeGIdeLleaIl~l 655 (1018)
+++|.++++..+.++.++..
T Consensus 157 ~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 157 EIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred eeecccchhHHHHHHHHHhh
Confidence 99999999999999888643
No 247
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.61 E-value=1.1e-14 Score=152.28 Aligned_cols=159 Identities=21% Similarity=0.305 Sum_probs=105.5
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccC-CEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVT-DIAV 570 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~A-DiVI 570 (1018)
+.|+++|++|+|||||+++|....+.... ..++..+..+. ....+....+.+||||||+.|..++..+++.+ +++|
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t~-~s~~~~~~~~~--~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV 77 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRSTV-TSIEPNVATFI--LNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIV 77 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCcc-CcEeecceEEE--eecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEE
Confidence 57999999999999999999987654332 22222222222 21123456799999999999999999999888 9999
Q ss_pred EEEecCCCC--ChhHHHHH----HHHH--HcCCCEEEEEecCCCCCCCh-HHHHHHHHh----------cCC--------
Q 001745 571 IVVAADDGI--RPQTNEAI----AHAK--AAGVPIVIAINKIDKDGANP-ERVMQELSS----------IGL-------- 623 (1018)
Q Consensus 571 LVVDAddGv--~~QT~E~I----~~ak--~~gIPIIVVINKiDL~~a~~-erv~~eL~e----------~gl-------- 623 (1018)
+|+|+.+.. ...+.+.+ .... ..++|+++++||+|+..+.+ +.+...+.. ..+
T Consensus 78 ~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~ 157 (203)
T cd04105 78 FVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEG 157 (203)
T ss_pred EEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 999998852 11222222 2111 14799999999999965433 223222221 000
Q ss_pred -------------CCCCCCCCCcEEEEecCCCC-ChHHHHHHHH
Q 001745 624 -------------MPEDWGGDIPMVQISALKGE-KVDDLLETIM 653 (1018)
Q Consensus 624 -------------~~e~~g~~vpiVeISAktGe-GIdeLleaIl 653 (1018)
.......++.|+++|++.+. |++.+.+||.
T Consensus 158 ~~~~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~ 201 (203)
T cd04105 158 SKESLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWID 201 (203)
T ss_pred cccccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHh
Confidence 01111246789999999877 6999998885
No 248
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.60 E-value=7.6e-15 Score=175.89 Aligned_cols=145 Identities=20% Similarity=0.268 Sum_probs=106.7
Q ss_pred eCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHH------HHhhh--ccCCEE
Q 001745 498 GHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAM------RARGA--RVTDIA 569 (1018)
Q Consensus 498 GhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~------r~rg~--~~ADiV 569 (1018)
|.+|+|||||+|+|.+.+...+..+|+|++.....+.+ + +..+++|||||++.|... ...++ ..+|++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~--~--~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvv 76 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGF--Q--GEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLV 76 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEE--C--CeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEE
Confidence 89999999999999988877778889998765544443 3 346899999999887543 22232 478999
Q ss_pred EEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCCh-HHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCChHHH
Q 001745 570 VIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANP-ERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDL 648 (1018)
Q Consensus 570 ILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~-erv~~eL~e~gl~~e~~g~~vpiVeISAktGeGIdeL 648 (1018)
++|+|+++. .+..+...++...++|+++|+||+|+..... ....+.+.+. + +++++++||++|+|++++
T Consensus 77 I~VvDat~l--er~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~------l--g~pvv~tSA~tg~Gi~eL 146 (591)
T TIGR00437 77 VNVVDASNL--ERNLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEKLEER------L--GVPVVPTSATEGRGIERL 146 (591)
T ss_pred EEEecCCcc--hhhHHHHHHHHhcCCCEEEEEehhHHHHhCCChhhHHHHHHH------c--CCCEEEEECCCCCCHHHH
Confidence 999999872 3345555566667999999999999853221 1112333332 1 368999999999999999
Q ss_pred HHHHHHHH
Q 001745 649 LETIMLVA 656 (1018)
Q Consensus 649 leaIl~la 656 (1018)
+++|....
T Consensus 147 ~~~i~~~~ 154 (591)
T TIGR00437 147 KDAIRKAI 154 (591)
T ss_pred HHHHHHHh
Confidence 99997653
No 249
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=7.1e-16 Score=167.09 Aligned_cols=235 Identities=25% Similarity=0.314 Sum_probs=170.1
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcC---cccccccCCceeeeeeEEEEEe-cCC--------------------------c
Q 001745 491 PPVLTIMGHVDHGKTTLLDHIRKT---KVAAAEAGGITQGIGAYKVQVP-VDG--------------------------K 540 (1018)
Q Consensus 491 ~pkVaImGhvdvGKTTLLnrL~~~---~v~~~e~gGiTqdIga~~V~i~-~dg--------------------------k 540 (1018)
..+|..+||+.|||||++.++.+- +|...-+..||+.+++.+-.+. .++ .
T Consensus 38 TiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g~ 117 (466)
T KOG0466|consen 38 TINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPGC 117 (466)
T ss_pred eeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccCCC
Confidence 457999999999999999998753 3444556788888876543331 010 0
Q ss_pred ------eecEEEEeCCCccchHHHHHhhhccCCEEEEEEecCC-CCChhHHHHHHHHHHcCCC-EEEEEecCCCCCCChH
Q 001745 541 ------LQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADD-GIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGANPE 612 (1018)
Q Consensus 541 ------~~~ItfIDTPGHE~F~~~r~rg~~~ADiVILVVDAdd-Gv~~QT~E~I~~ak~~gIP-IIVVINKiDL~~a~~e 612 (1018)
-+.+.|+|+|||+-+...+..++...|+++|++++.+ ..+|||-|++......... +|++-||+|+...+
T Consensus 118 ~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~LkhiiilQNKiDli~e~-- 195 (466)
T KOG0466|consen 118 EGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLIKES-- 195 (466)
T ss_pred CCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceEEEEechhhhhhHH--
Confidence 1458899999999999999999999999999999987 4689999999887777765 89999999996432
Q ss_pred HHHHHHHh-cCCCCCCCCCCCcEEEEecCCCCChHHHHHHHHHHHHHhhhhcCCCCCCcceEEEEeee--------cCCC
Q 001745 613 RVMQELSS-IGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLH--------KSKG 683 (1018)
Q Consensus 613 rv~~eL~e-~gl~~e~~g~~vpiVeISAktGeGIdeLleaIl~lael~~lk~~p~r~~~g~ViEs~~d--------kg~G 683 (1018)
...++..+ ..|.........|++|+||.-+.||+-+.+.|..-. ..+..+...++...|+.++.. .-.|
T Consensus 196 ~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkI--PvPvRdf~s~prlIVIRSFDVNkPG~ev~~lkG 273 (466)
T KOG0466|consen 196 QALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKI--PVPVRDFTSPPRLIVIRSFDVNKPGSEVDDLKG 273 (466)
T ss_pred HHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcC--CCCccccCCCCcEEEEEeeccCCCCchhhcccC
Confidence 11111111 122222233458999999999999999999997532 222334445666777777532 3458
Q ss_pred cEEEEEeEeeEEecCCEEEEcc---------------ceeEEEEEeccCCCcccccCCCccE
Q 001745 684 PVATFILQNGTLKKGDVVVCGE---------------AFGKVRALFDDSGNRVDEAGPSIPV 730 (1018)
Q Consensus 684 ~VatglV~~GtLkvGD~Vv~G~---------------~~gKVRaI~~~~g~~V~eA~pg~~V 730 (1018)
-|+.+.+..|.|++||.|.+-+ .+.+|-+|+.+ ...++.|.||--+
T Consensus 274 gvaggsil~Gvlkvg~~IEiRPGiv~kd~~g~~~C~Pi~SrI~sL~AE-~n~L~~AvPGGLI 334 (466)
T KOG0466|consen 274 GVAGGSILKGVLKVGQEIEIRPGIVTKDENGNIKCRPIFSRIVSLFAE-QNDLQFAVPGGLI 334 (466)
T ss_pred ccccchhhhhhhhcCcEEEecCceeeecCCCcEEEeeHHHHHHHHHhh-hccceeecCCcee
Confidence 8999999999999999987622 24566666666 4678889998443
No 250
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=1.3e-14 Score=160.65 Aligned_cols=240 Identities=21% Similarity=0.262 Sum_probs=171.4
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccc--------------cCCceeeeeeEEEEEe-----------------cCCc
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAE--------------AGGITQGIGAYKVQVP-----------------VDGK 540 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e--------------~gGiTqdIga~~V~i~-----------------~dgk 540 (1018)
.+|+++|..|+|||||+..|.......+. ..|-|..|....+-+. .+..
T Consensus 168 vRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~S 247 (591)
T KOG1143|consen 168 VRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEKS 247 (591)
T ss_pred EEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhhh
Confidence 47999999999999999988754433211 1123332222111111 0112
Q ss_pred eecEEEEeCCCccchHHHHHhhh--ccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCC-ChHHHHHH
Q 001745 541 LQPCVFLDTPGHEAFGAMRARGA--RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGA-NPERVMQE 617 (1018)
Q Consensus 541 ~~~ItfIDTPGHE~F~~~r~rg~--~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a-~~erv~~e 617 (1018)
..-++|||.+||.+|......++ ...|.++||++++.|+...|+|++..+.+.++|++|+++|+|+... ..++..++
T Consensus 248 SKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~~~~~~~~tv~~ 327 (591)
T KOG1143|consen 248 SKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLVDRQGLKKTVKD 327 (591)
T ss_pred cceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeeccccchhHHHHHHH
Confidence 34699999999999998888877 4579999999999999999999999999999999999999999643 23444444
Q ss_pred HHh----cCCCCC-----------------CCCCCCcEEEEecCCCCChHHHHHHHHHHHHHhh---hhcCCCCCCcceE
Q 001745 618 LSS----IGLMPE-----------------DWGGDIPMVQISALKGEKVDDLLETIMLVAELQE---LKANPHRNAKGTV 673 (1018)
Q Consensus 618 L~e----~gl~~e-----------------~~g~~vpiVeISAktGeGIdeLleaIl~lael~~---lk~~p~r~~~g~V 673 (1018)
+.. .|...- ..+.-+|+|.+|..+|+|++-|...|..+...-. .......+..+.|
T Consensus 328 l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fLn~Lsp~~~~~e~~~L~q~~~eFqv 407 (591)
T KOG1143|consen 328 LSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFLNCLSPAGTAEERIQLVQLPAEFQV 407 (591)
T ss_pred HHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHHhhcCCcCChHHHHHHhcCcceeeH
Confidence 432 221110 1123479999999999999877766654332110 0111234677888
Q ss_pred EEEeeecCCCcEEEEEeEeeEEecCCEEEEccc------eeEEEEEeccCCCcccccCCCccEEE
Q 001745 674 IEAGLHKSKGPVATFILQNGTLKKGDVVVCGEA------FGKVRALFDDSGNRVDEAGPSIPVQI 732 (1018)
Q Consensus 674 iEs~~dkg~G~VatglV~~GtLkvGD~Vv~G~~------~gKVRaI~~~~g~~V~eA~pg~~V~V 732 (1018)
.|++..+..|+|+.|++.+|.|+.|+.+++|+. ..+|-+|+.+ ...+..+.||+...+
T Consensus 408 dEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~~DG~F~~itV~sI~Rn-r~acrvvraGqaAsl 471 (591)
T KOG1143|consen 408 DEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIRRN-RQACRVVRAGQAASL 471 (591)
T ss_pred hHeecCCcccccccceeeeceeccCceeEeecCCCCceeEEEeeeeecc-ccceeeecCccceee
Confidence 999999999999999999999999999999874 3467778766 456778888887764
No 251
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.57 E-value=2.7e-14 Score=149.92 Aligned_cols=148 Identities=17% Similarity=0.169 Sum_probs=97.7
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEec-----CCceecEEEEeCCCccchHHHHHhhhccC
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPV-----DGKLQPCVFLDTPGHEAFGAMRARGARVT 566 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~-----dgk~~~ItfIDTPGHE~F~~~r~rg~~~A 566 (1018)
.+|+++|..++|||||+++|....+...+. .|.+..+....+.+ ++..+.+.||||+|++.|..++..+++.+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~--~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~a 78 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPS--WTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQV 78 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCC--cceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcC
Confidence 379999999999999999999887764433 34443332222222 24567899999999999999999999999
Q ss_pred CEEEEEEecCCCCChhHHH-HHHHHH----------------------HcCCCEEEEEecCCCCCCChHHHHHHHHhcCC
Q 001745 567 DIAVIVVAADDGIRPQTNE-AIAHAK----------------------AAGVPIVIAINKIDKDGANPERVMQELSSIGL 623 (1018)
Q Consensus 567 DiVILVVDAddGv~~QT~E-~I~~ak----------------------~~gIPIIVVINKiDL~~a~~erv~~eL~e~gl 623 (1018)
|++|||+|+++....+... ++..+. ..++|+|+|+||+|+.......-...+...+.
T Consensus 79 d~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ 158 (202)
T cd04102 79 NGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGF 158 (202)
T ss_pred CEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhh
Confidence 9999999999853332221 222221 13689999999999954211111112222223
Q ss_pred CCCCCCCCCcEEEEecCCCC
Q 001745 624 MPEDWGGDIPMVQISALKGE 643 (1018)
Q Consensus 624 ~~e~~g~~vpiVeISAktGe 643 (1018)
..+++ ..+.+.+++.+..
T Consensus 159 ia~~~--~~~~i~~~c~~~~ 176 (202)
T cd04102 159 VAEQG--NAEEINLNCTNGR 176 (202)
T ss_pred HHHhc--CCceEEEecCCcc
Confidence 33333 3567888887654
No 252
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.56 E-value=1.9e-14 Score=150.56 Aligned_cols=158 Identities=25% Similarity=0.336 Sum_probs=119.8
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEE
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiV 569 (1018)
+..+|+++|.+|+|||+|+.++....+.....+.+. ..|...+.+++....+.|+||+|++.|..|+..++..+|++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie---d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF 78 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE---DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGF 78 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc---ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEE
Confidence 457899999999999999999998888766544333 46677777788899999999999999999999999999999
Q ss_pred EEEEecCCCCChhHH----HHHHHHH-HcCCCEEEEEecCCCCCCC--hHHHHHHHHhcCCCCCCCCCCCcEEEEecCCC
Q 001745 570 VIVVAADDGIRPQTN----EAIAHAK-AAGVPIVIAINKIDKDGAN--PERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (1018)
Q Consensus 570 ILVVDAddGv~~QT~----E~I~~ak-~~gIPIIVVINKiDL~~a~--~erv~~eL~e~gl~~e~~g~~vpiVeISAktG 642 (1018)
++||++++....+.. +.|...+ ...+|+|+|+||+|+.... ..+--..+ ...| .++|+++||+..
T Consensus 79 ~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~l------a~~~--~~~f~E~Sak~~ 150 (196)
T KOG0395|consen 79 LLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKAL------ARSW--GCAFIETSAKLN 150 (196)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHH------HHhc--CCcEEEeeccCC
Confidence 999999985444332 2221222 2457999999999996421 11111111 1223 477999999999
Q ss_pred CChHHHHHHHHHHHHH
Q 001745 643 EKVDDLLETIMLVAEL 658 (1018)
Q Consensus 643 eGIdeLleaIl~lael 658 (1018)
.+++++|..|......
T Consensus 151 ~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 151 YNVDEVFYELVREIRL 166 (196)
T ss_pred cCHHHHHHHHHHHHHh
Confidence 9999999999876544
No 253
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.54 E-value=1e-14 Score=145.90 Aligned_cols=154 Identities=20% Similarity=0.179 Sum_probs=113.6
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEE
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiV 569 (1018)
-.++|+++|..-+|||||+-++..++|..... .|..-.+....+.+.+....+.||||+|+|+|..+-..|++.+|++
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHl--sTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa 89 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHL--STLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA 89 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcchhhH--HHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence 45789999999999999999999888764332 2333334444455566677899999999999999999999999999
Q ss_pred EEEEecCCCCChhHHHH----HHHHHHcCCCEEEEEecCCCCCC---ChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCC
Q 001745 570 VIVVAADDGIRPQTNEA----IAHAKAAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (1018)
Q Consensus 570 ILVVDAddGv~~QT~E~----I~~ak~~gIPIIVVINKiDL~~a---~~erv~~eL~e~gl~~e~~g~~vpiVeISAktG 642 (1018)
+||||++|.-..|-... ++.+....+.++||+||+||... ..++..+.....| ..++++||+.+
T Consensus 90 lLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvG---------A~y~eTSAk~N 160 (218)
T KOG0088|consen 90 LLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVG---------ALYMETSAKDN 160 (218)
T ss_pred EEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhc---------hhheecccccc
Confidence 99999999655554322 23333345679999999999532 2222233333322 56899999999
Q ss_pred CChHHHHHHHHH
Q 001745 643 EKVDDLLETIML 654 (1018)
Q Consensus 643 eGIdeLleaIl~ 654 (1018)
.||.+||+.|..
T Consensus 161 ~Gi~elFe~Lt~ 172 (218)
T KOG0088|consen 161 VGISELFESLTA 172 (218)
T ss_pred cCHHHHHHHHHH
Confidence 999999998753
No 254
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.54 E-value=2.1e-14 Score=144.44 Aligned_cols=153 Identities=20% Similarity=0.237 Sum_probs=112.5
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEE--EEEecCCceecEEEEeCCCccchHHHHHhhhccCC
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYK--VQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTD 567 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~--V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~AD 567 (1018)
..+++.++|+.-+||||||.+++..+++.-. ..|.++++|. +++. .|..+++++|||+|+|+|......+++++-
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaels--dptvgvdffarlie~~-pg~riklqlwdtagqerfrsitksyyrnsv 83 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELS--DPTVGVDFFARLIELR-PGYRIKLQLWDTAGQERFRSITKSYYRNSV 83 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccC--CCccchHHHHHHHhcC-CCcEEEEEEeeccchHHHHHHHHHHhhccc
Confidence 3467899999999999999999998887443 3466665554 3332 567788999999999999999999999999
Q ss_pred EEEEEEecCCCCChhHH-----HHHHHHHHcCCC-EEEEEecCCCCC---CChHHHHHHHHhcCCCCCCCCCCCcEEEEe
Q 001745 568 IAVIVVAADDGIRPQTN-----EAIAHAKAAGVP-IVIAINKIDKDG---ANPERVMQELSSIGLMPEDWGGDIPMVQIS 638 (1018)
Q Consensus 568 iVILVVDAddGv~~QT~-----E~I~~ak~~gIP-IIVVINKiDL~~---a~~erv~~eL~e~gl~~e~~g~~vpiVeIS 638 (1018)
++++|+|.++....... |...+......+ +.+|+.|+||.. .+.++.......++ ..||++|
T Consensus 84 gvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hg---------M~FVETS 154 (213)
T KOG0091|consen 84 GVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHG---------MAFVETS 154 (213)
T ss_pred ceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcC---------ceEEEec
Confidence 99999999974333222 222222212223 789999999953 23333333334444 5699999
Q ss_pred cCCCCChHHHHHHHHH
Q 001745 639 ALKGEKVDDLLETIML 654 (1018)
Q Consensus 639 AktGeGIdeLleaIl~ 654 (1018)
|++|.|+++.|..|..
T Consensus 155 ak~g~NVeEAF~mlaq 170 (213)
T KOG0091|consen 155 AKNGCNVEEAFDMLAQ 170 (213)
T ss_pred ccCCCcHHHHHHHHHH
Confidence 9999999999998864
No 255
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.53 E-value=1.6e-13 Score=142.13 Aligned_cols=163 Identities=20% Similarity=0.205 Sum_probs=111.5
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVIL 571 (1018)
.+|+++|..|+|||||+++|.+..+.....+.++..+....... ......+.+|||+|++.|..++..++..++++++
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEP--YRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEe--CCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 78999999999999999999998887655544443333222221 2236779999999999999999999999999999
Q ss_pred EEecCC-CCC-hhHHHHHHHHHH---cCCCEEEEEecCCCCCCChHH--HHHHHH-------hcCCCCCCCCCCCcEEEE
Q 001745 572 VVAADD-GIR-PQTNEAIAHAKA---AGVPIVIAINKIDKDGANPER--VMQELS-------SIGLMPEDWGGDIPMVQI 637 (1018)
Q Consensus 572 VVDAdd-Gv~-~QT~E~I~~ak~---~gIPIIVVINKiDL~~a~~er--v~~eL~-------e~gl~~e~~g~~vpiVeI 637 (1018)
|+|..+ ... .-+.++...+.. .+.|+|+++||+|+....... +...+. ..............++++
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET 163 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence 999986 222 223333334443 358999999999996543211 111110 000000010112338999
Q ss_pred ecC--CCCChHHHHHHHHHHH
Q 001745 638 SAL--KGEKVDDLLETIMLVA 656 (1018)
Q Consensus 638 SAk--tGeGIdeLleaIl~la 656 (1018)
||+ ++.||.+++..+....
T Consensus 164 s~~~~~~~~v~~~~~~~~~~~ 184 (219)
T COG1100 164 SAKSLTGPNVNELFKELLRKL 184 (219)
T ss_pred ecccCCCcCHHHHHHHHHHHH
Confidence 999 9999999999887654
No 256
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.52 E-value=2e-13 Score=146.05 Aligned_cols=145 Identities=28% Similarity=0.243 Sum_probs=98.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccch-------HHHHHhhhcc
Q 001745 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAF-------GAMRARGARV 565 (1018)
Q Consensus 493 kVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F-------~~~r~rg~~~ 565 (1018)
+|+++|.+|+|||||+++|.+.........++|.+.....+.+ .+..+++|||||+..+ .......++.
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~----~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ 77 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEY----KGAKIQLLDLPGIIEGAADGKGRGRQVIAVART 77 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEE----CCeEEEEEECCCcccccccchhHHHHHHHhhcc
Confidence 6899999999999999999987655556667776554433332 3467999999997432 2234457799
Q ss_pred CCEEEEEEecCCCCChhHH-------------------------------------------HHH-HHHHH---------
Q 001745 566 TDIAVIVVAADDGIRPQTN-------------------------------------------EAI-AHAKA--------- 592 (1018)
Q Consensus 566 ADiVILVVDAddGv~~QT~-------------------------------------------E~I-~~ak~--------- 592 (1018)
+|++++|+|+++... +.. +.+ ..++.
T Consensus 78 ad~il~V~D~t~~~~-~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~ 156 (233)
T cd01896 78 ADLILMVLDATKPEG-HREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVL 156 (233)
T ss_pred CCEEEEEecCCcchh-HHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEE
Confidence 999999999875321 110 111 11111
Q ss_pred ------------------cCCCEEEEEecCCCCCCChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCChHHHHHHHHH
Q 001745 593 ------------------AGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIML 654 (1018)
Q Consensus 593 ------------------~gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGeGIdeLleaIl~ 654 (1018)
..+|+++|+||+|+.. .++.. .+.. ..+++++||++|.|+++|++.|..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~--~~~~~-~~~~----------~~~~~~~SA~~g~gi~~l~~~i~~ 223 (233)
T cd01896 157 IREDITVDDLIDVIEGNRVYIPCLYVYNKIDLIS--IEELD-LLAR----------QPNSVVISAEKGLNLDELKERIWD 223 (233)
T ss_pred EccCCCHHHHHHHHhCCceEeeEEEEEECccCCC--HHHHH-HHhc----------CCCEEEEcCCCCCCHHHHHHHHHH
Confidence 2258999999999853 22222 1111 245899999999999999999875
Q ss_pred H
Q 001745 655 V 655 (1018)
Q Consensus 655 l 655 (1018)
.
T Consensus 224 ~ 224 (233)
T cd01896 224 K 224 (233)
T ss_pred H
Confidence 4
No 257
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.51 E-value=7.1e-14 Score=138.72 Aligned_cols=157 Identities=24% Similarity=0.285 Sum_probs=115.4
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVIL 571 (1018)
..++++|--++|||||++.+....+. +..+.|.++..+.+. .....+.+||.||+..|..||.++.+.++++++
T Consensus 21 mel~lvGLq~sGKtt~Vn~ia~g~~~--edmiptvGfnmrk~t----kgnvtiklwD~gGq~rfrsmWerycR~v~aivY 94 (186)
T KOG0075|consen 21 MELSLVGLQNSGKTTLVNVIARGQYL--EDMIPTVGFNMRKVT----KGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY 94 (186)
T ss_pred eeEEEEeeccCCcceEEEEEeeccch--hhhcccccceeEEec----cCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence 45999999999999999987654443 455667776655543 356789999999999999999999999999999
Q ss_pred EEecCCCCC-hhHHHHH----HHHHHcCCCEEEEEecCCCCCCChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCChH
Q 001745 572 VVAADDGIR-PQTNEAI----AHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVD 646 (1018)
Q Consensus 572 VVDAddGv~-~QT~E~I----~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGeGId 646 (1018)
|||+.|.-. +-.++.+ ......++|++|.+||+|++++-..... ...+++..- ...++.+|.+|+++..||+
T Consensus 95 ~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~l--i~rmgL~si-tdREvcC~siScke~~Nid 171 (186)
T KOG0075|consen 95 VVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIAL--IERMGLSSI-TDREVCCFSISCKEKVNID 171 (186)
T ss_pred EeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHH--HHHhCcccc-ccceEEEEEEEEcCCccHH
Confidence 999998321 1122222 2223468999999999999876443322 222333211 1135789999999999999
Q ss_pred HHHHHHHHHHH
Q 001745 647 DLLETIMLVAE 657 (1018)
Q Consensus 647 eLleaIl~lae 657 (1018)
.+++||.....
T Consensus 172 ~~~~Wli~hsk 182 (186)
T KOG0075|consen 172 ITLDWLIEHSK 182 (186)
T ss_pred HHHHHHHHHhh
Confidence 99999986654
No 258
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.50 E-value=3.2e-13 Score=136.30 Aligned_cols=157 Identities=21% Similarity=0.262 Sum_probs=115.0
Q ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCC
Q 001745 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTD 567 (1018)
Q Consensus 488 ~~r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~AD 567 (1018)
..|..+|.|+|..|+||||++++|.+.... .-..|.++...++.+ +.+.+++||..|+..+...|..|+..+|
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~~~---~i~pt~gf~Iktl~~----~~~~L~iwDvGGq~~lr~~W~nYfestd 85 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGEDTD---TISPTLGFQIKTLEY----KGYTLNIWDVGGQKTLRSYWKNYFESTD 85 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCCcc---ccCCccceeeEEEEe----cceEEEEEEcCCcchhHHHHHHhhhccC
Confidence 345688999999999999999999876532 222355544444443 5678999999999999999999999999
Q ss_pred EEEEEEecCCCC-ChhHHHHHHHH----HHcCCCEEEEEecCCCCCC-ChHHHHHHHHhcCCCCCCCCCCCcEEEEecCC
Q 001745 568 IAVIVVAADDGI-RPQTNEAIAHA----KAAGVPIVIAINKIDKDGA-NPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (1018)
Q Consensus 568 iVILVVDAddGv-~~QT~E~I~~a----k~~gIPIIVVINKiDL~~a-~~erv~~eL~e~gl~~e~~g~~vpiVeISAkt 641 (1018)
+.|+|||..|.. +.++...+..+ +.++.|++|+.||.|++++ +.+.+...+.-..+.. ..+++++-|||.+
T Consensus 86 glIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~k---s~~~~l~~cs~~t 162 (185)
T KOG0073|consen 86 GLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAK---SHHWRLVKCSAVT 162 (185)
T ss_pred eEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhcc---ccCceEEEEeccc
Confidence 999999998843 34444444333 3468899999999999754 3344432222111211 1357899999999
Q ss_pred CCChHHHHHHHHH
Q 001745 642 GEKVDDLLETIML 654 (1018)
Q Consensus 642 GeGIdeLleaIl~ 654 (1018)
|+++.+-++||..
T Consensus 163 ge~l~~gidWL~~ 175 (185)
T KOG0073|consen 163 GEDLLEGIDWLCD 175 (185)
T ss_pred cccHHHHHHHHHH
Confidence 9999999999864
No 259
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=2.6e-13 Score=133.73 Aligned_cols=152 Identities=22% Similarity=0.209 Sum_probs=112.7
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEE
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiV 569 (1018)
..++..|+|+.|+|||+||..|...++...-. .|+++.+..-.+.+.+...++++|||+|+++|......+++.+.++
T Consensus 10 yifkyiiigdmgvgkscllhqftekkfmadcp--htigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaaga 87 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCP--HTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 87 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHHhhcCC--cccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence 34678899999999999999999887765433 3555555555556678889999999999999999999999999999
Q ss_pred EEEEecCCCCChhH-HHHHHHHHHc---CCCEEEEEecCCCCC---CChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCC
Q 001745 570 VIVVAADDGIRPQT-NEAIAHAKAA---GVPIVIAINKIDKDG---ANPERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (1018)
Q Consensus 570 ILVVDAddGv~~QT-~E~I~~ak~~---gIPIIVVINKiDL~~---a~~erv~~eL~e~gl~~e~~g~~vpiVeISAktG 642 (1018)
++|+|++....... ..++..++.. +.-+++++||.|+.. ...++.++...+.+ ..|+++||++|
T Consensus 88 lmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeeng---------l~fle~saktg 158 (215)
T KOG0097|consen 88 LMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENG---------LMFLEASAKTG 158 (215)
T ss_pred eEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcC---------eEEEEeccccc
Confidence 99999986332221 1222333333 334899999999953 34455555555554 45899999999
Q ss_pred CChHHHHHHH
Q 001745 643 EKVDDLLETI 652 (1018)
Q Consensus 643 eGIdeLleaI 652 (1018)
+|+++.|-.-
T Consensus 159 ~nvedafle~ 168 (215)
T KOG0097|consen 159 QNVEDAFLET 168 (215)
T ss_pred CcHHHHHHHH
Confidence 9999876443
No 260
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=1.8e-13 Score=156.74 Aligned_cols=164 Identities=21% Similarity=0.252 Sum_probs=114.5
Q ss_pred hccCCCCCEEEEEeCCCCCHHHHHHHHHcCc-ccccccCCceeeeeeEEEEEecCCceecEEEEeCCCc--------cch
Q 001745 485 DKLEDRPPVLTIMGHVDHGKTTLLDHIRKTK-VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH--------EAF 555 (1018)
Q Consensus 485 ~~l~~r~pkVaImGhvdvGKTTLLnrL~~~~-v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGH--------E~F 555 (1018)
.+....++.|+|+|.||+|||||+|+|.+.. ..+++.+|+|+|.--.. ++-+++++.++||+|. |..
T Consensus 262 ~e~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~----v~~~G~~v~L~DTAGiRe~~~~~iE~~ 337 (531)
T KOG1191|consen 262 IERLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQ----VTVNGVPVRLSDTAGIREESNDGIEAL 337 (531)
T ss_pred HHHhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeE----eecCCeEEEEEeccccccccCChhHHH
Confidence 3455678999999999999999999998754 56889999999943333 3335678999999994 344
Q ss_pred HHHHHh-hhccCCEEEEEEecCCCCChhHHHHHHHHHHc------------CCCEEEEEecCCCCCCCh--HH-HHHHHH
Q 001745 556 GAMRAR-GARVTDIAVIVVAADDGIRPQTNEAIAHAKAA------------GVPIVIAINKIDKDGANP--ER-VMQELS 619 (1018)
Q Consensus 556 ~~~r~r-g~~~ADiVILVVDAddGv~~QT~E~I~~ak~~------------gIPIIVVINKiDL~~a~~--er-v~~eL~ 619 (1018)
.-++.+ .+..+|++++|+|+..+...+.....+.+... .-|+|++.||+|+...-+ .. .+....
T Consensus 338 gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~ 417 (531)
T KOG1191|consen 338 GIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPS 417 (531)
T ss_pred hHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccc
Confidence 455554 45899999999999877666666655554432 247899999999843210 00 000011
Q ss_pred hcCCCCCCCCCCCc-EEEEecCCCCChHHHHHHHHHHHHH
Q 001745 620 SIGLMPEDWGGDIP-MVQISALKGEKVDDLLETIMLVAEL 658 (1018)
Q Consensus 620 e~gl~~e~~g~~vp-iVeISAktGeGIdeLleaIl~lael 658 (1018)
.......+ +.++|++|++|++.|.++|....+.
T Consensus 418 ------~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~ 451 (531)
T KOG1191|consen 418 ------AEGRSVFPIVVEVSCTTKEGCERLSTALLNIVER 451 (531)
T ss_pred ------cccCcccceEEEeeechhhhHHHHHHHHHHHHHH
Confidence 11112333 4559999999999999999866543
No 261
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.48 E-value=3.9e-14 Score=138.49 Aligned_cols=180 Identities=20% Similarity=0.199 Sum_probs=122.4
Q ss_pred EEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEEEEec
Q 001745 496 IMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAA 575 (1018)
Q Consensus 496 ImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVILVVDA 575 (1018)
++|+.++|||+|+-++....+..+. --.|.+|.+.+..+..++...++++|||+|+|+|.+....+++.+|..+|++|+
T Consensus 2 llgds~~gktcllir~kdgafl~~~-fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGN-FISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred ccccCccCceEEEEEeccCceecCc-eeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 6899999999999777654443221 123677888887788889999999999999999999999999999999999999
Q ss_pred CCCCChhHHH-HHHHH---HHcCCCEEEEEecCCCCCC---ChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCChHHH
Q 001745 576 DDGIRPQTNE-AIAHA---KAAGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDL 648 (1018)
Q Consensus 576 ddGv~~QT~E-~I~~a---k~~gIPIIVVINKiDL~~a---~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGeGIdeL 648 (1018)
.+........ ++..+ ....+.+.+++||||+... ..+.-......+ .+||.++||+||.|++-.
T Consensus 81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y---------~ipfmetsaktg~nvd~a 151 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAY---------GIPFMETSAKTGFNVDLA 151 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHH---------CCCceeccccccccHhHH
Confidence 8754433322 22222 2245778999999999421 111111112222 378999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCCcceEEEEeeecCCCcEEE
Q 001745 649 LETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVAT 687 (1018)
Q Consensus 649 leaIl~lael~~lk~~p~r~~~g~ViEs~~dkg~G~Vat 687 (1018)
|-.|........+...|...+.-. .+..+.++|-++.
T Consensus 152 f~~ia~~l~k~~~~~~~~~~~~~~--~~v~~~~k~eia~ 188 (192)
T KOG0083|consen 152 FLAIAEELKKLKMGAPPEGEFADH--DSVADEGKGEIAR 188 (192)
T ss_pred HHHHHHHHHHhccCCCCCCccccc--hhHHhcCCCcccc
Confidence 988875443344444444333222 2233456665553
No 262
>PTZ00099 rab6; Provisional
Probab=99.48 E-value=3.4e-13 Score=138.26 Aligned_cols=125 Identities=21% Similarity=0.173 Sum_probs=91.3
Q ss_pred CceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEEEEecCCCCChhH-HHHHHHHH-H--cCCCEE
Q 001745 523 GITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQT-NEAIAHAK-A--AGVPIV 598 (1018)
Q Consensus 523 GiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVILVVDAddGv~~QT-~E~I~~ak-~--~gIPII 598 (1018)
..|+++.++...+.+++....+.||||||++.|..++..+++.+|++|||+|+++....+. .+++..+. . .++|+|
T Consensus 10 ~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~pii 89 (176)
T PTZ00099 10 QSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIA 89 (176)
T ss_pred CCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEE
Confidence 3466666666666677888999999999999999999999999999999999998432222 22332222 2 367899
Q ss_pred EEEecCCCCCC---ChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCChHHHHHHHHHHH
Q 001745 599 IAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLVA 656 (1018)
Q Consensus 599 VVINKiDL~~a---~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGeGIdeLleaIl~la 656 (1018)
+|+||+|+... ..++.......+ .+.|+++||++|.||+++|++|....
T Consensus 90 lVgNK~DL~~~~~v~~~e~~~~~~~~---------~~~~~e~SAk~g~nV~~lf~~l~~~l 141 (176)
T PTZ00099 90 LVGNKTDLGDLRKVTYEEGMQKAQEY---------NTMFHETSAKAGHNIKVLFKKIAAKL 141 (176)
T ss_pred EEEECcccccccCCCHHHHHHHHHHc---------CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999532 233333222222 24689999999999999999998543
No 263
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=1.3e-13 Score=141.59 Aligned_cols=157 Identities=20% Similarity=0.259 Sum_probs=121.6
Q ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCC
Q 001745 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTD 567 (1018)
Q Consensus 488 ~~r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~AD 567 (1018)
..+..+|+++|--++||||++.+|....+... -.|.+.....+.+ ++..+++||..|++.++..|..|++.++
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt---vPTiGfnVE~v~y----kn~~f~vWDvGGq~k~R~lW~~Y~~~t~ 86 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT---VPTIGFNVETVEY----KNISFTVWDVGGQEKLRPLWKHYFQNTQ 86 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC---CCccccceeEEEE----cceEEEEEecCCCcccccchhhhccCCc
Confidence 34557899999999999999999987766544 3476666666655 4688999999999999999999999999
Q ss_pred EEEEEEecCCCC-ChhHHHHH-HHHHH---cCCCEEEEEecCCCCCC-ChHHHHHHHHhcCCCCCCCCCCCcEEEEecCC
Q 001745 568 IAVIVVAADDGI-RPQTNEAI-AHAKA---AGVPIVIAINKIDKDGA-NPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (1018)
Q Consensus 568 iVILVVDAddGv-~~QT~E~I-~~ak~---~gIPIIVVINKiDL~~a-~~erv~~eL~e~gl~~e~~g~~vpiVeISAkt 641 (1018)
++|||+|.+|.. .+..++.+ ..+.. .+.|+++..||.|++++ +..++.+.+.-+.+....| .+..++|.+
T Consensus 87 ~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w----~iq~~~a~~ 162 (181)
T KOG0070|consen 87 GLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNW----HIQSTCAIS 162 (181)
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCc----EEeeccccc
Confidence 999999999832 12222222 22222 36899999999999876 4566777666666655444 588999999
Q ss_pred CCChHHHHHHHHHH
Q 001745 642 GEKVDDLLETIMLV 655 (1018)
Q Consensus 642 GeGIdeLleaIl~l 655 (1018)
|+|+.+-+++|...
T Consensus 163 G~GL~egl~wl~~~ 176 (181)
T KOG0070|consen 163 GEGLYEGLDWLSNN 176 (181)
T ss_pred cccHHHHHHHHHHH
Confidence 99999999999754
No 264
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=99.47 E-value=2.6e-13 Score=129.82 Aligned_cols=90 Identities=36% Similarity=0.468 Sum_probs=82.2
Q ss_pred cceEEEEeeecCCCcEEEEEeEeeEEecCCEEEEcccee----EEEEEeccCCC----------cccccCCCccEEEe--
Q 001745 670 KGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEAFG----KVRALFDDSGN----------RVDEAGPSIPVQII-- 733 (1018)
Q Consensus 670 ~g~ViEs~~dkg~G~VatglV~~GtLkvGD~Vv~G~~~g----KVRaI~~~~g~----------~V~eA~pg~~V~V~-- 733 (1018)
.|+|+|++.++|.|++++++|++|+|++||.|++|..+| |||+|+++++. +++++.|+.++.|.
T Consensus 2 ~gtVlEvk~~~G~G~t~dvIl~~GtL~~GD~Iv~g~~~Gpi~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~gvkI~~~ 81 (110)
T cd03703 2 QGTVLEVKEEEGLGTTIDVILYDGTLREGDTIVVCGLNGPIVTKVRALLKPQPLKELRVKSRFIHVKEVKAAAGVKILAP 81 (110)
T ss_pred cEEEEEEEEcCCCceEEEEEEECCeEecCCEEEEccCCCCceEEEeEecCCCCchhhccccccceeeEEecCCCcEEEeC
Confidence 689999999999999999999999999999999988886 99999999884 89999977777665
Q ss_pred ccCCCCCCCCeEEEecChHHHHHHHHH
Q 001745 734 GLNGVPIAGDEFEVVDSLDVAREKAEA 760 (1018)
Q Consensus 734 Gl~~vP~aGd~~~vv~~e~~Ar~~a~~ 760 (1018)
||+++ +||+.|+++.++++|+++++.
T Consensus 82 gL~~v-~aG~~~~vv~~e~~a~~~~~~ 107 (110)
T cd03703 82 DLEKA-IAGSPLLVVGPEDEIEELKEE 107 (110)
T ss_pred CCccc-cCCCEEEEECCHHHHHHHHHH
Confidence 69999 999999999999999887754
No 265
>PLN00023 GTP-binding protein; Provisional
Probab=99.46 E-value=7.3e-13 Score=147.97 Aligned_cols=135 Identities=18% Similarity=0.134 Sum_probs=93.4
Q ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecC-------------CceecEEEEeCCCccc
Q 001745 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVD-------------GKLQPCVFLDTPGHEA 554 (1018)
Q Consensus 488 ~~r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~d-------------gk~~~ItfIDTPGHE~ 554 (1018)
.....+|+|+|+.++|||||+++|....+..... .|++..++...+.++ +..+.+.||||+|++.
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~--pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr 95 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPP--QTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER 95 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcccccC--CceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh
Confidence 3455789999999999999999999877654333 344443332223332 2457799999999999
Q ss_pred hHHHHHhhhccCCEEEEEEecCCCCChhH-HHHHHHHHH---------------cCCCEEEEEecCCCCCC---------
Q 001745 555 FGAMRARGARVTDIAVIVVAADDGIRPQT-NEAIAHAKA---------------AGVPIVIAINKIDKDGA--------- 609 (1018)
Q Consensus 555 F~~~r~rg~~~ADiVILVVDAddGv~~QT-~E~I~~ak~---------------~gIPIIVVINKiDL~~a--------- 609 (1018)
|..++..+++.+|++|+|+|+++...... ..++..+.. .++|+|||+||+||...
T Consensus 96 frsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~ 175 (334)
T PLN00023 96 YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGN 175 (334)
T ss_pred hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccc
Confidence 99999999999999999999998332221 122233322 14789999999999542
Q ss_pred ChHHHHHHHHhcCCC
Q 001745 610 NPERVMQELSSIGLM 624 (1018)
Q Consensus 610 ~~erv~~eL~e~gl~ 624 (1018)
..+...+...++++.
T Consensus 176 ~~e~a~~~A~~~g~l 190 (334)
T PLN00023 176 LVDAARQWVEKQGLL 190 (334)
T ss_pred cHHHHHHHHHHcCCC
Confidence 134444555555654
No 266
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.46 E-value=4.9e-13 Score=145.99 Aligned_cols=168 Identities=24% Similarity=0.333 Sum_probs=109.8
Q ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHcCccc-ccccCCceeeeeeEEEEEecCCceecEEEEeCCC------ccchHH---
Q 001745 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG------HEAFGA--- 557 (1018)
Q Consensus 488 ~~r~pkVaImGhvdvGKTTLLnrL~~~~v~-~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPG------HE~F~~--- 557 (1018)
..+...|+++|.||+|||||.|.+.+.++. ++....+|++- +...+.....++.|+|||| |..+..
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~----ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s 144 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHR----ILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMS 144 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeee----eeEEEecCceEEEEecCCcccccchhhhHHHHHH
Confidence 346778999999999999999999988765 45556666652 2222234557899999999 222222
Q ss_pred ---HHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHH-cCCCEEEEEecCCCCCCChHHHHH----------------H
Q 001745 558 ---MRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKA-AGVPIVIAINKIDKDGANPERVMQ----------------E 617 (1018)
Q Consensus 558 ---~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~-~gIPIIVVINKiDL~~a~~erv~~----------------e 617 (1018)
.-.+.+..||++++|+|+++.-.+-....+..+.. .++|-|+++||+|+.... ++.- +
T Consensus 145 ~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k--~~Ll~l~~~Lt~g~l~~~kl~ 222 (379)
T KOG1423|consen 145 VLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQK--RLLLNLKDLLTNGELAKLKLE 222 (379)
T ss_pred hhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhh--hHHhhhHHhccccccchhhhh
Confidence 22356788999999999996322222223333332 479999999999985311 1110 0
Q ss_pred HH-hcCCCC--------CCCCCCCcEEEEecCCCCChHHHHHHHHHHHHHhhh
Q 001745 618 LS-SIGLMP--------EDWGGDIPMVQISALKGEKVDDLLETIMLVAELQEL 661 (1018)
Q Consensus 618 L~-e~gl~~--------e~~g~~vpiVeISAktGeGIdeLleaIl~lael~~l 661 (1018)
.. +....+ -.|.+--.+|++||++|+||++|.++|+.++..-++
T Consensus 223 v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW 275 (379)
T KOG1423|consen 223 VQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPW 275 (379)
T ss_pred HHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCC
Confidence 11 111111 014334569999999999999999999877654443
No 267
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.45 E-value=9.6e-13 Score=156.33 Aligned_cols=148 Identities=23% Similarity=0.326 Sum_probs=111.3
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchH------HHHHhhh--
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFG------AMRARGA-- 563 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~------~~r~rg~-- 563 (1018)
..|+++|+||+|||||+|+|++.+..++..+|.|.+.-...+. .++..++++|.||...+. ....+++
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~----~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~ 79 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLK----YKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLE 79 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEE----ecCceEEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence 4699999999999999999999999999999999875443333 344569999999954332 2233344
Q ss_pred ccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCC-----CChHHHHHHHHhcCCCCCCCCCCCcEEEEe
Q 001745 564 RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDG-----ANPERVMQELSSIGLMPEDWGGDIPMVQIS 638 (1018)
Q Consensus 564 ~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~-----a~~erv~~eL~e~gl~~e~~g~~vpiVeIS 638 (1018)
...|++|-|+|+++ -........++.+.++|+|+++|++|... .+.++..+. + .+|++++|
T Consensus 80 ~~~D~ivnVvDAtn--LeRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~---L---------GvPVv~tv 145 (653)
T COG0370 80 GKPDLIVNVVDATN--LERNLYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEKLSKL---L---------GVPVVPTV 145 (653)
T ss_pred CCCCEEEEEcccch--HHHHHHHHHHHHHcCCCeEEEeccHhhHHhcCCcccHHHHHHH---h---------CCCEEEEE
Confidence 56799999999986 33444455667778999999999999732 122222221 1 38999999
Q ss_pred cCCCCChHHHHHHHHHHHH
Q 001745 639 ALKGEKVDDLLETIMLVAE 657 (1018)
Q Consensus 639 AktGeGIdeLleaIl~lae 657 (1018)
|++|.|+++|++.+....+
T Consensus 146 A~~g~G~~~l~~~i~~~~~ 164 (653)
T COG0370 146 AKRGEGLEELKRAIIELAE 164 (653)
T ss_pred eecCCCHHHHHHHHHHhcc
Confidence 9999999999999976543
No 268
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=8.2e-14 Score=139.63 Aligned_cols=153 Identities=19% Similarity=0.219 Sum_probs=108.2
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEec--C-------CceecEEEEeCCCccchHHHHHhh
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPV--D-------GKLQPCVFLDTPGHEAFGAMRARG 562 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~--d-------gk~~~ItfIDTPGHE~F~~~r~rg 562 (1018)
++...+|+.|+||||+|.++...++...-. .|.+|.+....+-+ . +..+.+++|||+|+|+|.++....
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFI--sTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAF 87 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFI--STVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAF 87 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeE--EEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHH
Confidence 346789999999999999998777654332 35555544433322 1 234678999999999999999999
Q ss_pred hccCCEEEEEEecCCCC-ChhHHHHHHHHHH----cCCCEEEEEecCCCCCC---ChHHHHHHHHhcCCCCCCCCCCCcE
Q 001745 563 ARVTDIAVIVVAADDGI-RPQTNEAIAHAKA----AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPM 634 (1018)
Q Consensus 563 ~~~ADiVILVVDAddGv-~~QT~E~I~~ak~----~gIPIIVVINKiDL~~a---~~erv~~eL~e~gl~~e~~g~~vpi 634 (1018)
++.|=+++|++|.+..- ....+.++.+++. .+.-||+++||+||.+. +.++..+...+++ +||
T Consensus 88 fRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyg---------lPY 158 (219)
T KOG0081|consen 88 FRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYG---------LPY 158 (219)
T ss_pred HHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhC---------CCe
Confidence 99999999999998632 1223445555443 23349999999999642 2233333333443 699
Q ss_pred EEEecCCCCChHHHHHHHHHH
Q 001745 635 VQISALKGEKVDDLLETIMLV 655 (1018)
Q Consensus 635 VeISAktGeGIdeLleaIl~l 655 (1018)
|++||-+|.||++..+.|+.+
T Consensus 159 fETSA~tg~Nv~kave~Lldl 179 (219)
T KOG0081|consen 159 FETSACTGTNVEKAVELLLDL 179 (219)
T ss_pred eeeccccCcCHHHHHHHHHHH
Confidence 999999999999988776643
No 269
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.43 E-value=1.4e-12 Score=144.05 Aligned_cols=161 Identities=22% Similarity=0.267 Sum_probs=112.9
Q ss_pred hhccCCCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCc------cchH-
Q 001745 484 LDKLEDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH------EAFG- 556 (1018)
Q Consensus 484 ~~~l~~r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGH------E~F~- 556 (1018)
+..+....|.|+|.|+||+|||||++.++..+..+.+++.+|.++...++.. +..++++|||||. |...
T Consensus 161 LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~----~~~R~QvIDTPGlLDRPl~ErN~I 236 (346)
T COG1084 161 LPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFER----GYLRIQVIDTPGLLDRPLEERNEI 236 (346)
T ss_pred CCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeec----CCceEEEecCCcccCCChHHhcHH
Confidence 4556678899999999999999999999999999999999999887777654 3357999999993 1111
Q ss_pred -HHHHhhh-ccCCEEEEEEecCCCCChhHHHH---HHHH-HHcCCCEEEEEecCCCCC-CChHHHHHHHHhcCCCCCCCC
Q 001745 557 -AMRARGA-RVTDIAVIVVAADDGIRPQTNEA---IAHA-KAAGVPIVIAINKIDKDG-ANPERVMQELSSIGLMPEDWG 629 (1018)
Q Consensus 557 -~~r~rg~-~~ADiVILVVDAddGv~~QT~E~---I~~a-k~~gIPIIVVINKiDL~~-a~~erv~~eL~e~gl~~e~~g 629 (1018)
......+ ...++++|++|.+........+. ++.. ..++.|+++|+||+|..+ ...+++...+...+.
T Consensus 237 E~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~------ 310 (346)
T COG1084 237 ERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEEKLEEIEASVLEEGG------ 310 (346)
T ss_pred HHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchhHHHHHHHHHHhhcc------
Confidence 1111222 66899999999987432222222 2222 235689999999999863 333444444444332
Q ss_pred CCCcEEEEecCCCCChHHHHHHHHHHH
Q 001745 630 GDIPMVQISALKGEKVDDLLETIMLVA 656 (1018)
Q Consensus 630 ~~vpiVeISAktGeGIdeLleaIl~la 656 (1018)
.....+|+..+.+++.+.+.+...+
T Consensus 311 --~~~~~~~~~~~~~~d~~~~~v~~~a 335 (346)
T COG1084 311 --EEPLKISATKGCGLDKLREEVRKTA 335 (346)
T ss_pred --ccccceeeeehhhHHHHHHHHHHHh
Confidence 2346788999999999998887553
No 270
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.40 E-value=2.8e-12 Score=133.12 Aligned_cols=158 Identities=18% Similarity=0.255 Sum_probs=100.1
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCccccc-c--cC--CceeeeeeEEEEEecCCceecEEEEeCCCccchH-----HHHH
Q 001745 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAA-E--AG--GITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFG-----AMRA 560 (1018)
Q Consensus 491 ~pkVaImGhvdvGKTTLLnrL~~~~v~~~-e--~g--GiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~-----~~r~ 560 (1018)
+++|+|+|.+|+|||||+|+|++...... . .+ .+|+....|.. .....+++|||||...+. .+..
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~-----~~~~~l~l~DtpG~~~~~~~~~~~l~~ 75 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH-----PKFPNVTLWDLPGIGSTAFPPDDYLEE 75 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec-----CCCCCceEEeCCCCCcccCCHHHHHHH
Confidence 46899999999999999999987443211 1 01 12222211111 112469999999964321 1233
Q ss_pred hhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCC----------hHHHHHHHHhcC--CCCCCC
Q 001745 561 RGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN----------PERVMQELSSIG--LMPEDW 628 (1018)
Q Consensus 561 rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~----------~erv~~eL~e~g--l~~e~~ 628 (1018)
..+..+|++++|.+ +.+......++..++..+.|+++|+||+|+...+ .+++.+++.+.- ......
T Consensus 76 ~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 76 MKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred hCccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 44677899888754 4566666777788888899999999999983211 223333333210 000111
Q ss_pred CCCCcEEEEecC--CCCChHHHHHHHHHH
Q 001745 629 GGDIPMVQISAL--KGEKVDDLLETIMLV 655 (1018)
Q Consensus 629 g~~vpiVeISAk--tGeGIdeLleaIl~l 655 (1018)
....++|.+|+. .+.|+..|.+.|...
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~ 182 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKD 182 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHH
Confidence 224689999999 689999999998743
No 271
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.39 E-value=3.2e-12 Score=120.92 Aligned_cols=106 Identities=22% Similarity=0.316 Sum_probs=79.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCc-ccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccc---------hHHHHHhh
Q 001745 493 VLTIMGHVDHGKTTLLDHIRKTK-VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA---------FGAMRARG 562 (1018)
Q Consensus 493 kVaImGhvdvGKTTLLnrL~~~~-v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~---------F~~~r~rg 562 (1018)
+|+|+|.+|+|||||+++|.+.+ ...+...++|++.....+.+ .+..+.|+||||... ......+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~----~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~ 76 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEY----NNKKFILVDTPGINDGESQDNDGKEIRKFLEQ 76 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEE----TTEEEEEEESSSCSSSSHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeee----ceeeEEEEeCCCCcccchhhHHHHHHHHHHHH
Confidence 58999999999999999999754 34666678888874433333 334678999999432 12233445
Q ss_pred hccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEec
Q 001745 563 ARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINK 603 (1018)
Q Consensus 563 ~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINK 603 (1018)
+..+|++++|+|+++....+..+.++.++ .+.|+++|+||
T Consensus 77 ~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 77 ISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp HCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred HHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 58899999999988744555667777776 88999999998
No 272
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.39 E-value=5.9e-13 Score=139.20 Aligned_cols=161 Identities=24% Similarity=0.318 Sum_probs=115.5
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecC-CceecEEEEeCCCccchHHHHHhhhccCCE
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVD-GKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~d-gk~~~ItfIDTPGHE~F~~~r~rg~~~ADi 568 (1018)
+..+++|+|+..+|||+|+..+..+.+...+.+.. ++-|...+.++ ++.+.+.+|||+|+++|..+|...+..+|+
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTV---Fdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdv 79 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTV---FDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDV 79 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeE---EccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCE
Confidence 45789999999999999999888877765554322 25666677774 999999999999999999999889999999
Q ss_pred EEEEEecCCCCC-----hhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHhcCCCCC---------CCCCCCcE
Q 001745 569 AVIVVAADDGIR-----PQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPE---------DWGGDIPM 634 (1018)
Q Consensus 569 VILVVDAddGv~-----~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~e---------~~g~~vpi 634 (1018)
++++|++.+... ..|...+.+.. .++|+|+|++|.||.. +. .....+...+..+- ...+...|
T Consensus 80 fl~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~-d~-~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y 156 (198)
T KOG0393|consen 80 FLLCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRD-DP-STLEKLQRQGLEPVTYEQGLELAKEIGAVKY 156 (198)
T ss_pred EEEEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhh-CH-HHHHHHHhccCCcccHHHHHHHHHHhCccee
Confidence 999999887322 11222222221 5799999999999962 11 22223332221110 11234789
Q ss_pred EEEecCCCCChHHHHHHHHHHH
Q 001745 635 VQISALKGEKVDDLLETIMLVA 656 (1018)
Q Consensus 635 VeISAktGeGIdeLleaIl~la 656 (1018)
++|||++..|+.+.|+.....+
T Consensus 157 ~EcSa~tq~~v~~vF~~a~~~~ 178 (198)
T KOG0393|consen 157 LECSALTQKGVKEVFDEAIRAA 178 (198)
T ss_pred eeehhhhhCCcHHHHHHHHHHH
Confidence 9999999999999999876543
No 273
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.39 E-value=9.8e-13 Score=123.68 Aligned_cols=109 Identities=24% Similarity=0.345 Sum_probs=73.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCccc----ccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCE
Q 001745 493 VLTIMGHVDHGKTTLLDHIRKTKVA----AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (1018)
Q Consensus 493 kVaImGhvdvGKTTLLnrL~~~~v~----~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADi 568 (1018)
+|+|+|+.|+|||||+++|.+.... ..+..+.+.... ..........+.|||++|++.|.......+..+|+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ 76 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVD----VIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADA 76 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEE----EEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEE----EEEecCCceEEEEEecCccceecccccchhhcCcE
Confidence 5899999999999999999987665 112222332221 22234455569999999999888876667999999
Q ss_pred EEEEEecCCCCChhH----HHHHHHHHH--cCCCEEEEEecCC
Q 001745 569 AVIVVAADDGIRPQT----NEAIAHAKA--AGVPIVIAINKID 605 (1018)
Q Consensus 569 VILVVDAddGv~~QT----~E~I~~ak~--~gIPIIVVINKiD 605 (1018)
+|||+|+++....+. ...+..... .++|+|+++||.|
T Consensus 77 ~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 77 VILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 999999997332221 112233332 4699999999998
No 274
>PRK09866 hypothetical protein; Provisional
Probab=99.35 E-value=2.3e-11 Score=144.33 Aligned_cols=111 Identities=22% Similarity=0.247 Sum_probs=81.8
Q ss_pred ecEEEEeCCCc-cc----hHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcC--CCEEEEEecCCCCCCC---h
Q 001745 542 QPCVFLDTPGH-EA----FGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAG--VPIVIAINKIDKDGAN---P 611 (1018)
Q Consensus 542 ~~ItfIDTPGH-E~----F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~g--IPIIVVINKiDL~~a~---~ 611 (1018)
..+.|+||||. .. +..++...+..+|+++||+|+..+..+...+.++.++..+ .|+|+++||+|+.+.. .
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dreeddk 309 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRNSDDA 309 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCcccchH
Confidence 56899999993 32 4556667899999999999999888888888888888777 5999999999985321 3
Q ss_pred HHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCChHHHHHHHHH
Q 001745 612 ERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIML 654 (1018)
Q Consensus 612 erv~~eL~e~gl~~e~~g~~vpiVeISAktGeGIdeLleaIl~ 654 (1018)
+.+...+... +... ......+|+|||++|.|+++|++.|..
T Consensus 310 E~Lle~V~~~-L~q~-~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 310 DQVRALISGT-LMKG-CITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred HHHHHHHHHH-HHhc-CCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 3444433221 0000 001246999999999999999999864
No 275
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=6.8e-12 Score=148.90 Aligned_cols=118 Identities=27% Similarity=0.415 Sum_probs=94.5
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCccccc------------ccCCceeeeeeEEEEEecCCceecEEEEeCCCccchH
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAA------------EAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFG 556 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~~v~~~------------e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~ 556 (1018)
....+++++.|+|||||||.+.|...+...+ ..-..|++|+...-.+..-.+++.++|||+|||-+|.
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~ 86 (887)
T KOG0467|consen 7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS 86 (887)
T ss_pred CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh
Confidence 3556899999999999999999975433221 1112233333323223333467899999999999999
Q ss_pred HHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCC
Q 001745 557 AMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDK 606 (1018)
Q Consensus 557 ~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL 606 (1018)
.........+|+++++||+.+|+..||...++++...+...|+|+||||.
T Consensus 87 sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 87 SEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDR 136 (887)
T ss_pred hhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhh
Confidence 99999999999999999999999999999999999999999999999995
No 276
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=4.5e-12 Score=148.06 Aligned_cols=121 Identities=30% Similarity=0.461 Sum_probs=98.8
Q ss_pred ccCCCCCEEEEEeCCCCCHHHHHHHHHcCcccc-----------------cccCCceeeeeeEEEEE-ecCCceecEEEE
Q 001745 486 KLEDRPPVLTIMGHVDHGKTTLLDHIRKTKVAA-----------------AEAGGITQGIGAYKVQV-PVDGKLQPCVFL 547 (1018)
Q Consensus 486 ~l~~r~pkVaImGhvdvGKTTLLnrL~~~~v~~-----------------~e~gGiTqdIga~~V~i-~~dgk~~~ItfI 547 (1018)
+...+..+|+++||-.||||+|++.|....... ...+|.+++....++.. ...++.+-++|+
T Consensus 123 ~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nil 202 (971)
T KOG0468|consen 123 DNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNIL 202 (971)
T ss_pred cCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeee
Confidence 344566789999999999999999986432211 12345555544333332 235677889999
Q ss_pred eCCCccchHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCC
Q 001745 548 DTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDK 606 (1018)
Q Consensus 548 DTPGHE~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL 606 (1018)
|||||..|...+...+..+|+++||||+.+|++-+|..+|+++-..+.|+++|+||+|+
T Consensus 203 DTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 203 DTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDR 261 (971)
T ss_pred cCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHH
Confidence 99999999999999999999999999999999999999999999999999999999997
No 277
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.31 E-value=3.7e-11 Score=127.92 Aligned_cols=144 Identities=20% Similarity=0.275 Sum_probs=98.8
Q ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHcCcc--cccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhcc
Q 001745 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKV--AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARV 565 (1018)
Q Consensus 488 ~~r~pkVaImGhvdvGKTTLLnrL~~~~v--~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ 565 (1018)
...+..|+|+|++|+|||||++.|..... ......|+ +.+. ...+..++|+||||+. ......+..
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~------i~i~---~~~~~~i~~vDtPg~~---~~~l~~ak~ 103 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP------ITVV---TGKKRRLTFIECPNDI---NAMIDIAKV 103 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc------EEEE---ecCCceEEEEeCCchH---HHHHHHHHh
Confidence 45677899999999999999999875321 11111221 1111 1245679999999964 333455789
Q ss_pred CCEEEEEEecCCCCChhHHHHHHHHHHcCCC-EEEEEecCCCCCCC--hHHHHHHHHhcCCCCCCCCCCCcEEEEecCCC
Q 001745 566 TDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGAN--PERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (1018)
Q Consensus 566 ADiVILVVDAddGv~~QT~E~I~~ak~~gIP-IIVVINKiDL~~a~--~erv~~eL~e~gl~~e~~g~~vpiVeISAktG 642 (1018)
+|++++|+|+..+...++.+.+..+...++| +|+++||+|+.... .+++...+...-. . .+....+++++||++.
T Consensus 104 aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~-~-~~~~~~ki~~iSa~~~ 181 (225)
T cd01882 104 ADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFW-T-EVYQGAKLFYLSGIVH 181 (225)
T ss_pred cCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHH-H-hhCCCCcEEEEeeccC
Confidence 9999999999999999999999999888999 45599999996422 2344444433111 0 1112468999999988
Q ss_pred CCh
Q 001745 643 EKV 645 (1018)
Q Consensus 643 eGI 645 (1018)
-.+
T Consensus 182 ~~~ 184 (225)
T cd01882 182 GRY 184 (225)
T ss_pred CCC
Confidence 544
No 278
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=6.6e-12 Score=127.94 Aligned_cols=161 Identities=24% Similarity=0.302 Sum_probs=113.2
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCccc-ccc----cCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhc
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAE----AGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGAR 564 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v~-~~e----~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~ 564 (1018)
....|.|+|.-++|||||+.++...... .+. .-..|.++...++.+ . +..+.|||..|++...++|..++.
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v--~--~~~l~fwdlgGQe~lrSlw~~yY~ 91 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV--C--NAPLSFWDLGGQESLRSLWKKYYW 91 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee--c--cceeEEEEcCChHHHHHHHHHHHH
Confidence 4467999999999999999987643221 111 112344544555554 2 357999999999999999999999
Q ss_pred cCCEEEEEEecCCCCC-----hhHHHHHHHHHHcCCCEEEEEecCCCCCCCh-HHHHHHHHhcCCCCCCCCCCCcEEEEe
Q 001745 565 VTDIAVIVVAADDGIR-----PQTNEAIAHAKAAGVPIVIAINKIDKDGANP-ERVMQELSSIGLMPEDWGGDIPMVQIS 638 (1018)
Q Consensus 565 ~ADiVILVVDAddGv~-----~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~-erv~~eL~e~gl~~e~~g~~vpiVeIS 638 (1018)
.++++|++||+.+.-. .+....+.+-...++|+++.+||-|+.+.-. .++...+....... ..++++.|||
T Consensus 92 ~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~---~rd~~~~pvS 168 (197)
T KOG0076|consen 92 LAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIP---RRDNPFQPVS 168 (197)
T ss_pred HhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcC---CccCccccch
Confidence 9999999999998321 2223444445557999999999999965422 22222222122222 2468999999
Q ss_pred cCCCCChHHHHHHHHHHHH
Q 001745 639 ALKGEKVDDLLETIMLVAE 657 (1018)
Q Consensus 639 AktGeGIdeLleaIl~lae 657 (1018)
|++|+||++-.+|+....+
T Consensus 169 al~gegv~egi~w~v~~~~ 187 (197)
T KOG0076|consen 169 ALTGEGVKEGIEWLVKKLE 187 (197)
T ss_pred hhhcccHHHHHHHHHHHHh
Confidence 9999999999999986543
No 279
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.30 E-value=2.5e-11 Score=133.55 Aligned_cols=153 Identities=24% Similarity=0.246 Sum_probs=106.7
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCc-----c--chHHHHHhh
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH-----E--AFGAMRARG 562 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGH-----E--~F~~~r~rg 562 (1018)
-...|.++|-||+||||||++|...+-.+.++..+|.....-.+.+ ++. ..+++-|.||. . -......+.
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~y--ddf-~q~tVADiPGiI~GAh~nkGlG~~FLrH 271 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNY--DDF-SQITVADIPGIIEGAHMNKGLGYKFLRH 271 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeec--ccc-ceeEeccCccccccccccCcccHHHHHH
Confidence 3456999999999999999999998888888888987665555443 322 34999999992 1 133344566
Q ss_pred hccCCEEEEEEecCCC--CChhH-HH-HHHHHH-----HcCCCEEEEEecCCCCCCChHHHHHHHHhcCCCCCCCCCCCc
Q 001745 563 ARVTDIAVIVVAADDG--IRPQT-NE-AIAHAK-----AAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIP 633 (1018)
Q Consensus 563 ~~~ADiVILVVDAddG--v~~QT-~E-~I~~ak-----~~gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~e~~g~~vp 633 (1018)
+..|+..+||+|++.+ ..+++ .+ .+..+. ..+.|.+||+||+|++++. +....+|...- ....
T Consensus 272 iER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae-~~~l~~L~~~l-------q~~~ 343 (366)
T KOG1489|consen 272 IERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE-KNLLSSLAKRL-------QNPH 343 (366)
T ss_pred HHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH-HHHHHHHHHHc-------CCCc
Confidence 7889999999999875 22322 21 122222 1467899999999996322 22233343321 1135
Q ss_pred EEEEecCCCCChHHHHHHHH
Q 001745 634 MVQISALKGEKVDDLLETIM 653 (1018)
Q Consensus 634 iVeISAktGeGIdeLleaIl 653 (1018)
+|++||++++|+.+|++.|.
T Consensus 344 V~pvsA~~~egl~~ll~~lr 363 (366)
T KOG1489|consen 344 VVPVSAKSGEGLEELLNGLR 363 (366)
T ss_pred EEEeeeccccchHHHHHHHh
Confidence 99999999999999998874
No 280
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.29 E-value=3.7e-11 Score=124.35 Aligned_cols=152 Identities=18% Similarity=0.211 Sum_probs=101.2
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccc--cCCceeeeeeEEEEEecCCceecEEEEeCCCccch-------HHHHHh-
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAE--AGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAF-------GAMRAR- 561 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e--~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F-------~~~r~r- 561 (1018)
.+|+++|.+|+|||||+|.|.+....... ..+.|++...+...+ .+..++|+||||-..+ .....+
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~----~~~~i~viDTPG~~d~~~~~~~~~~~i~~~ 76 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW----DGRRVNVIDTPGLFDTSVSPEQLSKEIVRC 76 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE----CCeEEEEEECcCCCCccCChHHHHHHHHHH
Confidence 36999999999999999999987654332 346777766555443 3457999999994332 112222
Q ss_pred ---hhccCCEEEEEEecCCCCChhHHHHHHHHHHc-C----CCEEEEEecCCCCCCC-hH--------HHHHHHHhcCCC
Q 001745 562 ---GARVTDIAVIVVAADDGIRPQTNEAIAHAKAA-G----VPIVIAINKIDKDGAN-PE--------RVMQELSSIGLM 624 (1018)
Q Consensus 562 ---g~~~ADiVILVVDAddGv~~QT~E~I~~ak~~-g----IPIIVVINKiDL~~a~-~e--------rv~~eL~e~gl~ 624 (1018)
.....|++|||+++++ ......+.++.++.. + .++|+++|++|..... .+ .+...+...+
T Consensus 77 ~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~-- 153 (196)
T cd01852 77 LSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCG-- 153 (196)
T ss_pred HHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhC--
Confidence 2356899999999987 777777777776552 2 5789999999974422 12 2222222222
Q ss_pred CCCCCCCCcEEEE-----ecCCCCChHHHHHHHHHHHH
Q 001745 625 PEDWGGDIPMVQI-----SALKGEKVDDLLETIMLVAE 657 (1018)
Q Consensus 625 ~e~~g~~vpiVeI-----SAktGeGIdeLleaIl~lae 657 (1018)
+ .++.. |+..+.++.+|++.|..+..
T Consensus 154 -----~--r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~ 184 (196)
T cd01852 154 -----G--RYVAFNNKAKGEEQEQQVKELLAKVESMVK 184 (196)
T ss_pred -----C--eEEEEeCCCCcchhHHHHHHHHHHHHHHHH
Confidence 1 12222 46678899999999976654
No 281
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=2.1e-11 Score=120.57 Aligned_cols=155 Identities=19% Similarity=0.172 Sum_probs=114.2
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEE
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiV 569 (1018)
+...|+.+|-.++||||++..|.-...... -.|.++....+++ ++..+++||..|++..+..|.+|+..+.++
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~---ipTvGFnvetVty----kN~kfNvwdvGGqd~iRplWrhYy~gtqgl 88 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQSVTT---IPTVGFNVETVTY----KNVKFNVWDVGGQDKIRPLWRHYYTGTQGL 88 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCCccc---ccccceeEEEEEe----eeeEEeeeeccCchhhhHHHHhhccCCceE
Confidence 356799999999999999999986543322 1255555555554 567899999999999999999999999999
Q ss_pred EEEEecCCCC-ChhH----HHHHHHHHHcCCCEEEEEecCCCCCC-ChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCC
Q 001745 570 VIVVAADDGI-RPQT----NEAIAHAKAAGVPIVIAINKIDKDGA-NPERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (1018)
Q Consensus 570 ILVVDAddGv-~~QT----~E~I~~ak~~gIPIIVVINKiDL~~a-~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGe 643 (1018)
|||+|+.+.- .... ..++.+-...+.+++|..||-|++++ .++++...+.-..+.... ..+.++||.+|+
T Consensus 89 IFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~----W~vqp~~a~~gd 164 (180)
T KOG0071|consen 89 IFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRN----WYVQPSCALSGD 164 (180)
T ss_pred EEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCc----cEeeccccccch
Confidence 9999998742 1111 22223334457899999999999876 455555555433333333 458999999999
Q ss_pred ChHHHHHHHHHH
Q 001745 644 KVDDLLETIMLV 655 (1018)
Q Consensus 644 GIdeLleaIl~l 655 (1018)
|+.+-|.+|...
T Consensus 165 gL~eglswlsnn 176 (180)
T KOG0071|consen 165 GLKEGLSWLSNN 176 (180)
T ss_pred hHHHHHHHHHhh
Confidence 999999988643
No 282
>COG2262 HflX GTPases [General function prediction only]
Probab=99.28 E-value=3.2e-11 Score=136.69 Aligned_cols=153 Identities=25% Similarity=0.302 Sum_probs=107.6
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCc---------cchHHHH
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH---------EAFGAMR 559 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGH---------E~F~~~r 559 (1018)
..-|.|+++|..|+|||||+|+|++........-..|-+.....+.+. .+..+.+-||-|. ++|.+..
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~---~g~~vlLtDTVGFI~~LP~~LV~AFksTL 266 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELG---DGRKVLLTDTVGFIRDLPHPLVEAFKSTL 266 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeC---CCceEEEecCccCcccCChHHHHHHHHHH
Confidence 456889999999999999999999877766666677777666666653 2467999999992 4555443
Q ss_pred HhhhccCCEEEEEEecCCCCChhH-HHHHHHHH---HcCCCEEEEEecCCCCCCChHHHHHHHHhcCCCCCCCCCCCcEE
Q 001745 560 ARGARVTDIAVIVVAADDGIRPQT-NEAIAHAK---AAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMV 635 (1018)
Q Consensus 560 ~rg~~~ADiVILVVDAddGv~~QT-~E~I~~ak---~~gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~e~~g~~vpiV 635 (1018)
.....+|++++|+|+++....+. ......+. ...+|+|+|.||+|+..... ....+... ....+
T Consensus 267 -EE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~--~~~~~~~~---------~~~~v 334 (411)
T COG2262 267 -EEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE--ILAELERG---------SPNPV 334 (411)
T ss_pred -HHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh--hhhhhhhc---------CCCeE
Confidence 34578999999999998532221 12222333 35689999999999853221 11111111 01489
Q ss_pred EEecCCCCChHHHHHHHHHHH
Q 001745 636 QISALKGEKVDDLLETIMLVA 656 (1018)
Q Consensus 636 eISAktGeGIdeLleaIl~la 656 (1018)
++||++|.|++.|++.|....
T Consensus 335 ~iSA~~~~gl~~L~~~i~~~l 355 (411)
T COG2262 335 FISAKTGEGLDLLRERIIELL 355 (411)
T ss_pred EEEeccCcCHHHHHHHHHHHh
Confidence 999999999999999987544
No 283
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.23 E-value=1.3e-10 Score=127.74 Aligned_cols=116 Identities=20% Similarity=0.245 Sum_probs=83.8
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCccccccc--------CCceeeeeeEEEEEecCCceecEEEEeCCCccchHH------
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEA--------GGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGA------ 557 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~--------gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~------ 557 (1018)
++|+++|+.|+|||||+|+|.+..+..... ...|..+..+...+..++....++||||||...+..
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~ 84 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWK 84 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHH
Confidence 579999999999999999999876543321 233444555555555566667899999999433211
Q ss_pred ---------------H-----HHhhh--ccCCEEEEEEecCC-CCChhHHHHHHHHHHcCCCEEEEEecCCCCC
Q 001745 558 ---------------M-----RARGA--RVTDIAVIVVAADD-GIRPQTNEAIAHAKAAGVPIVIAINKIDKDG 608 (1018)
Q Consensus 558 ---------------~-----r~rg~--~~ADiVILVVDAdd-Gv~~QT~E~I~~ak~~gIPIIVVINKiDL~~ 608 (1018)
. +...+ ..+|+++++++.+. ++.++..+.++.+.. ++|+|+|+||+|+..
T Consensus 85 ~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~vi~VinK~D~l~ 157 (276)
T cd01850 85 PIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCCEEEEEECCCcCC
Confidence 0 10122 24788999998774 788888898988875 899999999999853
No 284
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.22 E-value=2.3e-10 Score=128.17 Aligned_cols=84 Identities=21% Similarity=0.263 Sum_probs=61.8
Q ss_pred EEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEe-------------------cCC-ceecEEEEeCCCc-
Q 001745 494 LTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVP-------------------VDG-KLQPCVFLDTPGH- 552 (1018)
Q Consensus 494 VaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~-------------------~dg-k~~~ItfIDTPGH- 552 (1018)
|+|+|.+|+|||||+++|++........+++|++.......+. +++ ....++||||||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 5899999999999999999888776777777765543322221 122 3357999999996
Q ss_pred ---cchHHHHHh---hhccCCEEEEEEecCC
Q 001745 553 ---EAFGAMRAR---GARVTDIAVIVVAADD 577 (1018)
Q Consensus 553 ---E~F~~~r~r---g~~~ADiVILVVDAdd 577 (1018)
+.+..+... .++.||++++|||+..
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 445554444 4799999999999973
No 285
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.21 E-value=9.5e-11 Score=129.48 Aligned_cols=150 Identities=29% Similarity=0.307 Sum_probs=103.1
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCc-cchH------HHHHhhhc
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH-EAFG------AMRARGAR 564 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGH-E~F~------~~r~rg~~ 564 (1018)
..|+++|.|++||||||+.|++......+++.+|... ++-.+..++..|+++|+||. +... ......++
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~----VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R 139 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEP----VPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVAR 139 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCccccccCceeccc----ccceEeecCceEEEEcCcccccCcccCCCCcceeeeeec
Confidence 4799999999999999999999988888888888653 33333446678999999993 2111 22334468
Q ss_pred cCCEEEEEEecCCCCC---------------------------------------------hhHHHH-H-----------
Q 001745 565 VTDIAVIVVAADDGIR---------------------------------------------PQTNEA-I----------- 587 (1018)
Q Consensus 565 ~ADiVILVVDAddGv~---------------------------------------------~QT~E~-I----------- 587 (1018)
.||++|+|+|+..... ..+... +
T Consensus 140 ~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~ 219 (365)
T COG1163 140 NADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVL 219 (365)
T ss_pred cCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEE
Confidence 9999999999984211 011110 0
Q ss_pred -----------HHHHH--cCCCEEEEEecCCCCCCChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCChHHHHHHHHH
Q 001745 588 -----------AHAKA--AGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIML 654 (1018)
Q Consensus 588 -----------~~ak~--~gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGeGIdeLleaIl~ 654 (1018)
..+.. .-+|.|+++||+|+.+ .+. ...+.+. ..++++||++|.|+++|.+.|..
T Consensus 220 Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~--~e~-~~~l~~~----------~~~v~isa~~~~nld~L~e~i~~ 286 (365)
T COG1163 220 IREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG--LEE-LERLARK----------PNSVPISAKKGINLDELKERIWD 286 (365)
T ss_pred EecCCcHHHHHHHHhhcceeeeeEEEEecccccC--HHH-HHHHHhc----------cceEEEecccCCCHHHHHHHHHH
Confidence 11111 1359999999999965 222 2223222 25899999999999999999986
Q ss_pred HHHH
Q 001745 655 VAEL 658 (1018)
Q Consensus 655 lael 658 (1018)
...+
T Consensus 287 ~L~l 290 (365)
T COG1163 287 VLGL 290 (365)
T ss_pred hhCe
Confidence 5543
No 286
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.17 E-value=3.1e-11 Score=130.44 Aligned_cols=172 Identities=23% Similarity=0.363 Sum_probs=111.1
Q ss_pred hccCCCCCEEEEEeCCCCCHHHHHHHHHcCcc---------------------------------------cccccCCce
Q 001745 485 DKLEDRPPVLTIMGHVDHGKTTLLDHIRKTKV---------------------------------------AAAEAGGIT 525 (1018)
Q Consensus 485 ~~l~~r~pkVaImGhvdvGKTTLLnrL~~~~v---------------------------------------~~~e~gGiT 525 (1018)
+....+|+.|.++|..|+||||++.+|...-. ..++.|||+
T Consensus 13 ~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~ 92 (366)
T KOG1532|consen 13 SGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIV 92 (366)
T ss_pred cccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchh
Confidence 34567889999999999999999999852110 012234444
Q ss_pred eeeeeEEEEEe-------cCCceecEEEEeCCCc-cchHHHH-----Hhhh--ccCCEEEEEEecCCCCChhH-----HH
Q 001745 526 QGIGAYKVQVP-------VDGKLQPCVFLDTPGH-EAFGAMR-----ARGA--RVTDIAVIVVAADDGIRPQT-----NE 585 (1018)
Q Consensus 526 qdIga~~V~i~-------~dgk~~~ItfIDTPGH-E~F~~~r-----~rg~--~~ADiVILVVDAddGv~~QT-----~E 585 (1018)
..+..+...+. -......+.+|||||| |.|.... ...+ ...-++++|+|......+-| ..
T Consensus 93 TsLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlY 172 (366)
T KOG1532|consen 93 TSLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLY 172 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHH
Confidence 33322221110 0123356899999996 6665432 2222 33457889999876544444 45
Q ss_pred HHHHHHHcCCCEEEEEecCCCCCCC--------hHHHHHHHHh------------cCCCCCCCCCCCcEEEEecCCCCCh
Q 001745 586 AIAHAKAAGVPIVIAINKIDKDGAN--------PERVMQELSS------------IGLMPEDWGGDIPMVQISALKGEKV 645 (1018)
Q Consensus 586 ~I~~ak~~gIPIIVVINKiDL~~a~--------~erv~~eL~e------------~gl~~e~~g~~vpiVeISAktGeGI 645 (1018)
+...+....+|+|++.||+|+.+.. .+.+.+.+.+ ..+..+.|...+..+.+||.+|.|.
T Consensus 173 AcSilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ 252 (366)
T KOG1532|consen 173 ACSILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGF 252 (366)
T ss_pred HHHHHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcH
Confidence 5566777899999999999996532 2333333332 1233445566789999999999999
Q ss_pred HHHHHHHHHHH
Q 001745 646 DDLLETIMLVA 656 (1018)
Q Consensus 646 deLleaIl~la 656 (1018)
+++|.++....
T Consensus 253 ddf~~av~~~v 263 (366)
T KOG1532|consen 253 DDFFTAVDESV 263 (366)
T ss_pred HHHHHHHHHHH
Confidence 99999987543
No 287
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.17 E-value=1.2e-10 Score=120.91 Aligned_cols=115 Identities=21% Similarity=0.288 Sum_probs=68.6
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEec-CCceecEEEEeCCCccchHHHHHhh---hcc
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPV-DGKLQPCVFLDTPGHEAFGAMRARG---ARV 565 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~-dgk~~~ItfIDTPGHE~F~~~r~rg---~~~ 565 (1018)
+.+.|.|+|+.|+|||+|+.+|.......+.. .+ .-...+.+ ......+.++|+|||++++...... ...
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~t---S~---e~n~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~ 75 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVT---SM---ENNIAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSN 75 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B------S---SEEEECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGG
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeec---cc---cCCceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhh
Confidence 45789999999999999999999874432211 11 11112212 2345679999999999988755554 788
Q ss_pred CCEEEEEEecCCCCChhHHHHHHHH-------H--HcCCCEEEEEecCCCCCCCh
Q 001745 566 TDIAVIVVAADDGIRPQTNEAIAHA-------K--AAGVPIVIAINKIDKDGANP 611 (1018)
Q Consensus 566 ADiVILVVDAddGv~~QT~E~I~~a-------k--~~gIPIIVVINKiDL~~a~~ 611 (1018)
+.++|||+|+.. ...+..+..+++ . ...+|++|++||.|+..+.+
T Consensus 76 ~k~IIfvvDSs~-~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~ 129 (181)
T PF09439_consen 76 AKGIIFVVDSST-DQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKP 129 (181)
T ss_dssp EEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---
T ss_pred CCEEEEEEeCcc-chhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCC
Confidence 999999999874 222222222222 1 24678999999999976554
No 288
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.13 E-value=6.4e-11 Score=121.10 Aligned_cols=155 Identities=20% Similarity=0.199 Sum_probs=115.3
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCE
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADi 568 (1018)
.+.++++|+|..++||||++.++++.-|...+.. |+++.+..-.+.+.+...++.+|||+|++.|......+++.|.+
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTkdykk--tIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa 95 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKK--TIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQA 95 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhcccccccccc--ccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccc
Confidence 4678999999999999999999998766544433 44444444344455677789999999999999999999999999
Q ss_pred EEEEEecCCCCCh-hHHHHHHHHHH--cCCCEEEEEecCCCCCC---ChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCC
Q 001745 569 AVIVVAADDGIRP-QTNEAIAHAKA--AGVPIVIAINKIDKDGA---NPERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (1018)
Q Consensus 569 VILVVDAddGv~~-QT~E~I~~ak~--~gIPIIVVINKiDL~~a---~~erv~~eL~e~gl~~e~~g~~vpiVeISAktG 642 (1018)
.+||++.+|.... .+.++.+.... ..+|.+++-||||+.+. +.+++......+ ...++.+|++..
T Consensus 96 ~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds~~~~~evE~lak~l---------~~RlyRtSvked 166 (246)
T KOG4252|consen 96 SVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKL---------HKRLYRTSVKED 166 (246)
T ss_pred eEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhhhcchHHHHHHHHHh---------hhhhhhhhhhhh
Confidence 9999999885432 33444444332 47999999999999542 223333332222 246788999999
Q ss_pred CChHHHHHHHHH
Q 001745 643 EKVDDLLETIML 654 (1018)
Q Consensus 643 eGIdeLleaIl~ 654 (1018)
.|+...|..|..
T Consensus 167 ~NV~~vF~YLae 178 (246)
T KOG4252|consen 167 FNVMHVFAYLAE 178 (246)
T ss_pred hhhHHHHHHHHH
Confidence 999999998863
No 289
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.12 E-value=1.4e-10 Score=115.06 Aligned_cols=155 Identities=23% Similarity=0.232 Sum_probs=112.8
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCE
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADi 568 (1018)
.|..+|.++|--++||||||..|.......- ..|+++. .+.+.+++ .+++++||..|+...+..|..|+...|+
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~hl---tpT~GFn--~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~ 88 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHL---TPTNGFN--TKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDG 88 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhhc---cccCCcc--eEEEeecC-cEEEEEEecCCccccchhhhhhhhccce
Confidence 5678999999999999999999976544211 1244443 34444444 4789999999999999999999999999
Q ss_pred EEEEEecCCCC-----ChhHHHHHHHHHHcCCCEEEEEecCCCCC-CChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCC
Q 001745 569 AVIVVAADDGI-----RPQTNEAIAHAKAAGVPIVIAINKIDKDG-ANPERVMQELSSIGLMPEDWGGDIPMVQISALKG 642 (1018)
Q Consensus 569 VILVVDAddGv-----~~QT~E~I~~ak~~gIPIIVVINKiDL~~-a~~erv~~eL~e~gl~~e~~g~~vpiVeISAktG 642 (1018)
+|+|+|..|.- .....|.+...+...+|+.+..||-|+.. +..+++...+.-.++.... ..+-+|||.++
T Consensus 89 lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRs----whIq~csals~ 164 (185)
T KOG0074|consen 89 LIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRS----WHIQECSALSL 164 (185)
T ss_pred EEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhce----EEeeeCccccc
Confidence 99999988732 22233444444557899999999999843 3334444333334443333 46889999999
Q ss_pred CChHHHHHHHH
Q 001745 643 EKVDDLLETIM 653 (1018)
Q Consensus 643 eGIdeLleaIl 653 (1018)
+|+.+-.+++.
T Consensus 165 eg~~dg~~wv~ 175 (185)
T KOG0074|consen 165 EGSTDGSDWVQ 175 (185)
T ss_pred cCccCcchhhh
Confidence 99999888874
No 290
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.12 E-value=1.6e-10 Score=112.68 Aligned_cols=136 Identities=23% Similarity=0.262 Sum_probs=100.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCC----ccchHHHHHhhhccCCE
Q 001745 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG----HEAFGAMRARGARVTDI 568 (1018)
Q Consensus 493 kVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPG----HE~F~~~r~rg~~~ADi 568 (1018)
++++||.+++|||||.+.|.+...... -||.+.+.. . -.||||| |..+-.-.......+|+
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~lyk----KTQAve~~d-------~----~~IDTPGEy~~~~~~Y~aL~tt~~dadv 67 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLYK----KTQAVEFND-------K----GDIDTPGEYFEHPRWYHALITTLQDADV 67 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhhc----ccceeeccC-------c----cccCCchhhhhhhHHHHHHHHHhhccce
Confidence 689999999999999999987654322 365532211 1 2589999 44444444455688999
Q ss_pred EEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCC-CCChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCChHH
Q 001745 569 AVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKD-GANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDD 647 (1018)
Q Consensus 569 VILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~-~a~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGeGIde 647 (1018)
+++|-.++++... -.-.++.....|+|-+++|.|+. +++.......|.+.|- -++|.+|+.+..|+++
T Consensus 68 i~~v~~and~~s~---f~p~f~~~~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa--------~~IF~~s~~d~~gv~~ 136 (148)
T COG4917 68 IIYVHAANDPESR---FPPGFLDIGVKKVIGVVTKADLAEDADISLVKRWLREAGA--------EPIFETSAVDNQGVEE 136 (148)
T ss_pred eeeeecccCcccc---CCcccccccccceEEEEecccccchHhHHHHHHHHHHcCC--------cceEEEeccCcccHHH
Confidence 9999999985322 11223333456799999999997 6788888999998873 5799999999999999
Q ss_pred HHHHHHH
Q 001745 648 LLETIML 654 (1018)
Q Consensus 648 LleaIl~ 654 (1018)
|++.|..
T Consensus 137 l~~~L~~ 143 (148)
T COG4917 137 LVDYLAS 143 (148)
T ss_pred HHHHHHh
Confidence 9998864
No 291
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.12 E-value=7.1e-10 Score=123.47 Aligned_cols=157 Identities=25% Similarity=0.247 Sum_probs=107.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCc-----c--chHHHHHhhhcc
Q 001745 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH-----E--AFGAMRARGARV 565 (1018)
Q Consensus 493 kVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGH-----E--~F~~~r~rg~~~ 565 (1018)
-|.++|-||+||||||+.+...+..+..++.+|.....-.+.+ .....+.+-|.||. + -......+.+..
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~---~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER 237 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV---DGGESFVVADIPGLIEGASEGVGLGLRFLRHIER 237 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe---cCCCcEEEecCcccccccccCCCccHHHHHHHHh
Confidence 4899999999999999999998888888999998776666665 23346999999992 2 122334456677
Q ss_pred CCEEEEEEecCCCCC---hhHHHHH-HHHH-----HcCCCEEEEEecCCCCCC--ChHHHHHHHHhcCCCCCCCCCCCcE
Q 001745 566 TDIAVIVVAADDGIR---PQTNEAI-AHAK-----AAGVPIVIAINKIDKDGA--NPERVMQELSSIGLMPEDWGGDIPM 634 (1018)
Q Consensus 566 ADiVILVVDAddGv~---~QT~E~I-~~ak-----~~gIPIIVVINKiDL~~a--~~erv~~eL~e~gl~~e~~g~~vpi 634 (1018)
|-+.++|||++..-. .+..+.+ ..+. ..+.|.+||+||||++.. ..+.+...+.... .| ..+
T Consensus 238 t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~----~~---~~~ 310 (369)
T COG0536 238 TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEAL----GW---EVF 310 (369)
T ss_pred hheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhc----CC---Ccc
Confidence 999999999985321 2222222 2222 247899999999996432 2233334443321 11 222
Q ss_pred EEEecCCCCChHHHHHHHHHHHHHh
Q 001745 635 VQISALKGEKVDDLLETIMLVAELQ 659 (1018)
Q Consensus 635 VeISAktGeGIdeLleaIl~lael~ 659 (1018)
+++||.+++|+++|+..+..+....
T Consensus 311 ~~ISa~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 311 YLISALTREGLDELLRALAELLEET 335 (369)
T ss_pred eeeehhcccCHHHHHHHHHHHHHHh
Confidence 2399999999999999988665543
No 292
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=99.10 E-value=3.7e-10 Score=102.91 Aligned_cols=75 Identities=27% Similarity=0.507 Sum_probs=62.4
Q ss_pred EeEEEE--EEeecCCceEEEEEEeeeeEeeCCcEEEeeCCEEEEEEEEeeeecccccccccccCceeEEEEccCCCCCCC
Q 001745 908 GSAEVR--AIFSSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDLEEG 985 (1018)
Q Consensus 908 G~A~V~--~vF~~~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~i~SLk~~k~dV~ev~~G~EcGi~i~~f~d~~~G 985 (1018)
|...|. ++|+.++ .|.| .|..|.|+.|+++ +|. ..|.|.||++.+++|+++++|+||+|+|++..++++|
T Consensus 5 ~ki~Ilp~~vFr~~~-~IvG-~V~~G~ik~G~~l----~G~--~iG~I~sIe~~~k~v~~A~~G~eVai~Ieg~~~i~eG 76 (81)
T PF14578_consen 5 GKIRILPVCVFRQSD-AIVG-EVLEGIIKPGYPL----DGR--KIGRIKSIEDNGKNVDEAKKGDEVAISIEGPTQIKEG 76 (81)
T ss_dssp EEEEEEEEEEECTCC-EEEE-EEEEEEEETT-EE----CSS--CEEEEEEEEETTEEESEEETT-EEEEEEET--TB-TT
T ss_pred eEEEECCcCEEecCC-eEEE-EEeeeEEeCCCcc----CCE--EEEEEEEeEECCcCccccCCCCEEEEEEeCCccCCCC
Confidence 344444 7899888 9999 9999999999997 887 5999999999999999999999999999999999999
Q ss_pred CEEEE
Q 001745 986 DIIEA 990 (1018)
Q Consensus 986 D~ie~ 990 (1018)
|+||+
T Consensus 77 DiLyV 81 (81)
T PF14578_consen 77 DILYV 81 (81)
T ss_dssp -EEEE
T ss_pred CEEeC
Confidence 99985
No 293
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.08 E-value=4.6e-10 Score=122.14 Aligned_cols=165 Identities=16% Similarity=0.246 Sum_probs=109.3
Q ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccc-------hHHHHH
Q 001745 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA-------FGAMRA 560 (1018)
Q Consensus 488 ~~r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~-------F~~~r~ 560 (1018)
...+.+|.+||..|+|||||+|+|..........-+.+.++..+... .+++ ..++||||||.++ +.....
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~-~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~ 112 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRL-SYDG--ENLVLWDTPGLGDGKDKDAEHRQLYR 112 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHh-hccc--cceEEecCCCcccchhhhHHHHHHHH
Confidence 34666788999999999999999996555433323333333332222 1233 4699999999654 667777
Q ss_pred hhhccCCEEEEEEecCCCCChhHHHHHHHHHH--cCCCEEEEEecCCCCCC----C------hHHHHHHHHhc-CCCCCC
Q 001745 561 RGARVTDIAVIVVAADDGIRPQTNEAIAHAKA--AGVPIVIAINKIDKDGA----N------PERVMQELSSI-GLMPED 627 (1018)
Q Consensus 561 rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~--~gIPIIVVINKiDL~~a----~------~erv~~eL~e~-gl~~e~ 627 (1018)
.++...|+++++++++|....-..+.+++... .+.++|+++|.+|+... + ...+.+.+.+. ......
T Consensus 113 d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~ 192 (296)
T COG3596 113 DYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRL 192 (296)
T ss_pred HHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 78899999999999999766556666655543 34789999999998321 1 11222222110 000011
Q ss_pred CCCCCcEEEEecCCCCChHHHHHHHHHH
Q 001745 628 WGGDIPMVQISALKGEKVDDLLETIMLV 655 (1018)
Q Consensus 628 ~g~~vpiVeISAktGeGIdeLleaIl~l 655 (1018)
+..--|++.+|+..+.|++.|..+++..
T Consensus 193 ~q~V~pV~~~~~r~~wgl~~l~~ali~~ 220 (296)
T COG3596 193 FQEVKPVVAVSGRLPWGLKELVRALITA 220 (296)
T ss_pred HhhcCCeEEeccccCccHHHHHHHHHHh
Confidence 1123589999999999999999998754
No 294
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.08 E-value=2.4e-09 Score=123.34 Aligned_cols=85 Identities=20% Similarity=0.228 Sum_probs=61.8
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEe-------------------cC-CceecEEEEeCCC
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVP-------------------VD-GKLQPCVFLDTPG 551 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~-------------------~d-gk~~~ItfIDTPG 551 (1018)
++|+|+|.+|+|||||+++|++..+.....+++|++.....+.+. .+ .....++|+||||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 579999999999999999999888777777888866544332221 11 1235689999999
Q ss_pred c----cchHHHHH---hhhccCCEEEEEEecC
Q 001745 552 H----EAFGAMRA---RGARVTDIAVIVVAAD 576 (1018)
Q Consensus 552 H----E~F~~~r~---rg~~~ADiVILVVDAd 576 (1018)
. ..+..+.. ..++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 3 23333333 3479999999999996
No 295
>PRK13768 GTPase; Provisional
Probab=99.03 E-value=1.4e-09 Score=118.13 Aligned_cols=113 Identities=25% Similarity=0.314 Sum_probs=74.7
Q ss_pred cEEEEeCCCccchHH---HHH---hhhcc--CCEEEEEEecCCCCChhHHHHHHHHH-----HcCCCEEEEEecCCCCCC
Q 001745 543 PCVFLDTPGHEAFGA---MRA---RGARV--TDIAVIVVAADDGIRPQTNEAIAHAK-----AAGVPIVIAINKIDKDGA 609 (1018)
Q Consensus 543 ~ItfIDTPGHE~F~~---~r~---rg~~~--ADiVILVVDAddGv~~QT~E~I~~ak-----~~gIPIIVVINKiDL~~a 609 (1018)
.+.+|||||+..+.. .+. +.+.. ++++++|+|+..+..+.+.+....+. ..++|+|+|+||+|+...
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~ 177 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE 177 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence 689999999765432 222 22333 89999999998877777765554432 568999999999999653
Q ss_pred C-hHHHHHHHHh-------cCC--------------CCCCCCCCCcEEEEecCCCCChHHHHHHHHHH
Q 001745 610 N-PERVMQELSS-------IGL--------------MPEDWGGDIPMVQISALKGEKVDDLLETIMLV 655 (1018)
Q Consensus 610 ~-~erv~~eL~e-------~gl--------------~~e~~g~~vpiVeISAktGeGIdeLleaIl~l 655 (1018)
+ .++....+.. ... .....+...+++++||++++|+++|+++|...
T Consensus 178 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~ 245 (253)
T PRK13768 178 EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEV 245 (253)
T ss_pred hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHH
Confidence 2 2222222221 000 00112234689999999999999999999643
No 296
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=1.4e-09 Score=114.42 Aligned_cols=157 Identities=18% Similarity=0.250 Sum_probs=100.1
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhc---cC
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGAR---VT 566 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~---~A 566 (1018)
.++.|.++|..|+|||+|+-.|+........ ..++-.-+.|.. +....+++|.|||.+.+.-...++. .+
T Consensus 37 ~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tv-tSiepn~a~~r~------gs~~~~LVD~PGH~rlR~kl~e~~~~~~~a 109 (238)
T KOG0090|consen 37 KQNAVLLVGLSDSGKTSLFTQLITGSHRGTV-TSIEPNEATYRL------GSENVTLVDLPGHSRLRRKLLEYLKHNYSA 109 (238)
T ss_pred cCCcEEEEecCCCCceeeeeehhcCCccCee-eeeccceeeEee------cCcceEEEeCCCcHHHHHHHHHHccccccc
Confidence 4467999999999999999999876432110 111111112221 2224899999999998877777775 78
Q ss_pred CEEEEEEecCCCCC------hhHHHHHHHH--HHcCCCEEEEEecCCCCCCChHHHHHH-HHhc--------C----CC-
Q 001745 567 DIAVIVVAADDGIR------PQTNEAIAHA--KAAGVPIVIAINKIDKDGANPERVMQE-LSSI--------G----LM- 624 (1018)
Q Consensus 567 DiVILVVDAddGv~------~QT~E~I~~a--k~~gIPIIVVINKiDL~~a~~erv~~e-L~e~--------g----l~- 624 (1018)
-++|||||+..-.. .-..+.+... ....+|++++.||.|+..+.+.+..++ |+.. . ..
T Consensus 110 kaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ 189 (238)
T KOG0090|consen 110 KAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISD 189 (238)
T ss_pred eeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 99999999874211 1112222222 234678999999999977665554333 2210 0 00
Q ss_pred -----------------CCCCC-CCCcEEEEecCCCCChHHHHHHHHH
Q 001745 625 -----------------PEDWG-GDIPMVQISALKGEKVDDLLETIML 654 (1018)
Q Consensus 625 -----------------~e~~g-~~vpiVeISAktGeGIdeLleaIl~ 654 (1018)
..... .++.|.+.|+++| +|+++.+||..
T Consensus 190 ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~ 236 (238)
T KOG0090|consen 190 EDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIRE 236 (238)
T ss_pred ccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHH
Confidence 00111 3577999999999 99999999863
No 297
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=6.2e-10 Score=110.75 Aligned_cols=155 Identities=23% Similarity=0.198 Sum_probs=108.1
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEE
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIA 569 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiV 569 (1018)
+..++.++|-.|+||||++-++.-.++.... .|.++...+++ .++.++++||..|+-.....|..++..+|.+
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvttk---Ptigfnve~v~----yKNLk~~vwdLggqtSirPyWRcYy~dt~av 89 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTTK---PTIGFNVETVP----YKNLKFQVWDLGGQTSIRPYWRCYYADTDAV 89 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccccC---CCCCcCccccc----cccccceeeEccCcccccHHHHHHhcccceE
Confidence 4568999999999999999887655443221 24444444443 3667899999999999999999999999999
Q ss_pred EEEEecCCCC--ChhHHHHHHHHHH---cCCCEEEEEecCCCCCCCh-HHHHHHHHhcCCCCCCCCCCCcEEEEecCCCC
Q 001745 570 VIVVAADDGI--RPQTNEAIAHAKA---AGVPIVIAINKIDKDGANP-ERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (1018)
Q Consensus 570 ILVVDAddGv--~~QT~E~I~~ak~---~gIPIIVVINKiDL~~a~~-erv~~eL~e~gl~~e~~g~~vpiVeISAktGe 643 (1018)
|+|||..|.. ...-.+....+.. .+..++++.||+|..+.-. .++...|.-..+.. ..+.+|..||.+|+
T Consensus 90 IyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~----r~~~Iv~tSA~kg~ 165 (182)
T KOG0072|consen 90 IYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKD----RIWQIVKTSAVKGE 165 (182)
T ss_pred EEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhh----heeEEEeecccccc
Confidence 9999998732 2222333333332 3556899999999865322 22222221111111 13679999999999
Q ss_pred ChHHHHHHHHHH
Q 001745 644 KVDDLLETIMLV 655 (1018)
Q Consensus 644 GIdeLleaIl~l 655 (1018)
|+++.++||...
T Consensus 166 Gld~~~DWL~~~ 177 (182)
T KOG0072|consen 166 GLDPAMDWLQRP 177 (182)
T ss_pred CCcHHHHHHHHH
Confidence 999999999753
No 298
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=1.5e-09 Score=110.41 Aligned_cols=159 Identities=20% Similarity=0.158 Sum_probs=111.4
Q ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccC
Q 001745 487 LEDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVT 566 (1018)
Q Consensus 487 l~~r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~A 566 (1018)
+..+.-+++++|--|+|||||++.|..++....- .|.|.+...+.+ .+.+++-+|..||..-...+..++..+
T Consensus 16 L~kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhv---PTlHPTSE~l~I----g~m~ftt~DLGGH~qArr~wkdyf~~v 88 (193)
T KOG0077|consen 16 LYKKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHV---PTLHPTSEELSI----GGMTFTTFDLGGHLQARRVWKDYFPQV 88 (193)
T ss_pred HhccCceEEEEeecCCchhhHHHHHccccccccC---CCcCCChHHhee----cCceEEEEccccHHHHHHHHHHHHhhh
Confidence 5567789999999999999999999887765432 366655555544 456799999999999999999999999
Q ss_pred CEEEEEEecCCCC-ChhHHHHHHHH----HHcCCCEEEEEecCCCCCCChHHHHHH---HHh----cCCC--CCCCCCCC
Q 001745 567 DIAVIVVAADDGI-RPQTNEAIAHA----KAAGVPIVIAINKIDKDGANPERVMQE---LSS----IGLM--PEDWGGDI 632 (1018)
Q Consensus 567 DiVILVVDAddGv-~~QT~E~I~~a----k~~gIPIIVVINKiDL~~a~~erv~~e---L~e----~gl~--~e~~g~~v 632 (1018)
|.+++.||+-|.- ....++.+..+ ...++|+++.+||+|.+.+..+.-... +.+ .+.. ...-...+
T Consensus 89 ~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~ 168 (193)
T KOG0077|consen 89 DAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPL 168 (193)
T ss_pred ceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeE
Confidence 9999999998732 22333333322 236899999999999987643332221 111 1111 11122335
Q ss_pred cEEEEecCCCCChHHHHHHH
Q 001745 633 PMVQISALKGEKVDDLLETI 652 (1018)
Q Consensus 633 piVeISAktGeGIdeLleaI 652 (1018)
.++.||...+.|.-+-|.|+
T Consensus 169 evfmcsi~~~~gy~e~fkwl 188 (193)
T KOG0077|consen 169 EVFMCSIVRKMGYGEGFKWL 188 (193)
T ss_pred EEEEEEEEccCccceeeeeh
Confidence 67889988888876666655
No 299
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=1.1e-09 Score=125.42 Aligned_cols=132 Identities=29% Similarity=0.411 Sum_probs=101.8
Q ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHcC-ccc---------------ccccCCceeeeeeEEEEEe------------cCC
Q 001745 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT-KVA---------------AAEAGGITQGIGAYKVQVP------------VDG 539 (1018)
Q Consensus 488 ~~r~pkVaImGhvdvGKTTLLnrL~~~-~v~---------------~~e~gGiTqdIga~~V~i~------------~dg 539 (1018)
.....++.++.|+|||||||.+.|... .+. .....+||+.-.+..+.+. -++
T Consensus 16 ~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~ 95 (842)
T KOG0469|consen 16 KKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDG 95 (842)
T ss_pred ccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCC
Confidence 345567899999999999999998632 111 1234577766555444332 245
Q ss_pred ceecEEEEeCCCccchHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCC----CCChHHHH
Q 001745 540 KLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKD----GANPERVM 615 (1018)
Q Consensus 540 k~~~ItfIDTPGHE~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~----~a~~erv~ 615 (1018)
.+.-|++||.|||.+|++.....++.+|++++|+|.-+|+--||.-.++++....+.-++++||+|.. ....+++.
T Consensus 96 ~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DRAlLELq~~~EeLy 175 (842)
T KOG0469|consen 96 NGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDRALLELQLSQEELY 175 (842)
T ss_pred cceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhhHHHHhhcCCHHHHH
Confidence 67789999999999999999999999999999999999999999999999998888889999999972 23445544
Q ss_pred HHHH
Q 001745 616 QELS 619 (1018)
Q Consensus 616 ~eL~ 619 (1018)
+.++
T Consensus 176 qtf~ 179 (842)
T KOG0469|consen 176 QTFQ 179 (842)
T ss_pred HHHH
Confidence 4443
No 300
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=1.2e-09 Score=113.13 Aligned_cols=152 Identities=17% Similarity=0.166 Sum_probs=110.6
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEE
Q 001745 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (1018)
Q Consensus 491 ~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVI 570 (1018)
..+++++|..+.||||++.+.+...+..... .|.++..+...+..+-+.+++..|||.|+|.|...+.-++-...++|
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~--at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYP--ATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred eEEEEEecCCcccccchhhhhhcccceeccc--CcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 4689999999999999999998877764433 35555555544433333588999999999999999999999999999
Q ss_pred EEEecCCCCCh-----hHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCCh
Q 001745 571 IVVAADDGIRP-----QTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKV 645 (1018)
Q Consensus 571 LVVDAddGv~~-----QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGeGI 645 (1018)
+++|+...+.. +.++..+.+. ++||++++||.|..... +. ...+ .-....++.++++||+++.|.
T Consensus 88 imFdVtsr~t~~n~~rwhrd~~rv~~--NiPiv~cGNKvDi~~r~---~k----~k~v-~~~rkknl~y~~iSaksn~Nf 157 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPRWHRDLVRVRE--NIPIVLCGNKVDIKARK---VK----AKPV-SFHRKKNLQYYEISAKSNYNF 157 (216)
T ss_pred EEeeeeehhhhhcchHHHHHHHHHhc--CCCeeeeccceeccccc---cc----cccc-eeeecccceeEEeeccccccc
Confidence 99999864433 3333333333 69999999999984321 00 0000 011124688999999999999
Q ss_pred HHHHHHHHH
Q 001745 646 DDLLETIML 654 (1018)
Q Consensus 646 deLleaIl~ 654 (1018)
+.-|-++.+
T Consensus 158 ekPFl~Lar 166 (216)
T KOG0096|consen 158 ERPFLWLAR 166 (216)
T ss_pred ccchHHHhh
Confidence 999988864
No 301
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.89 E-value=1.5e-08 Score=114.31 Aligned_cols=111 Identities=23% Similarity=0.269 Sum_probs=67.2
Q ss_pred ceecEEEEeCCCccchHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCC-hHHHHHHH
Q 001745 540 KLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN-PERVMQEL 618 (1018)
Q Consensus 540 k~~~ItfIDTPGHE~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~-~erv~~eL 618 (1018)
.++.+.|+||+|.-.-.. .....+|++++|++...+..-|.... ....+.-|+|+||+|+.... ..+...++
T Consensus 147 ~g~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~k~----gi~E~aDIiVVNKaDl~~~~~a~~~~~el 219 (332)
T PRK09435 147 AGYDVILVETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGIKK----GIMELADLIVINKADGDNKTAARRAAAEY 219 (332)
T ss_pred cCCCEEEEECCCCccchh---HHHHhCCEEEEEecCCchHHHHHHHh----hhhhhhheEEeehhcccchhHHHHHHHHH
Confidence 357899999999542211 13578999999976333322222111 01122348999999986432 23333333
Q ss_pred Hh-cCCCC-CCCCCCCcEEEEecCCCCChHHHHHHHHHHHH
Q 001745 619 SS-IGLMP-EDWGGDIPMVQISALKGEKVDDLLETIMLVAE 657 (1018)
Q Consensus 619 ~e-~gl~~-e~~g~~vpiVeISAktGeGIdeLleaIl~lae 657 (1018)
.. +.+.. .......|++.+||++|.||++|++.|....+
T Consensus 220 ~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 220 RSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 32 22211 11112468999999999999999999976543
No 302
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.87 E-value=6.4e-09 Score=113.26 Aligned_cols=160 Identities=24% Similarity=0.314 Sum_probs=116.4
Q ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHcCccc---ccccCCceeeeeeEEEEEecCCceecEEEEeCCC----------ccc
Q 001745 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVA---AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG----------HEA 554 (1018)
Q Consensus 488 ~~r~pkVaImGhvdvGKTTLLnrL~~~~v~---~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPG----------HE~ 554 (1018)
..+.|.++++|..|+|||||||.+...... .....|-||.|..|.+. ..+.++|.|| -+.
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~-------~~~~~vDlPG~~~a~y~~~~~~d 205 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG-------KSWYEVDLPGYGRAGYGFELPAD 205 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc-------ceEEEEecCCcccccCCccCcch
Confidence 467799999999999999999998754432 22267889988887763 3589999999 245
Q ss_pred hHHHHHhhh---ccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCCh---HHH-HHHHH-hcCCCCC
Q 001745 555 FGAMRARGA---RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANP---ERV-MQELS-SIGLMPE 626 (1018)
Q Consensus 555 F~~~r~rg~---~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~---erv-~~eL~-e~gl~~e 626 (1018)
+..+...|+ ..-=.++|++|++-++++-+...+..+...++|+.+|.||||+...-. .+. .+... -.++...
T Consensus 206 ~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~ 285 (320)
T KOG2486|consen 206 WDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRG 285 (320)
T ss_pred HhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhhhhhhccccccCccccceeehhhcccc
Confidence 566666665 334467888999999999999999999999999999999999842110 000 00000 1122233
Q ss_pred CCCCCCcEEEEecCCCCChHHHHHHHHH
Q 001745 627 DWGGDIPMVQISALKGEKVDDLLETIML 654 (1018)
Q Consensus 627 ~~g~~vpiVeISAktGeGIdeLleaIl~ 654 (1018)
.+.-..|++.+|+.++.|+++|+-.|..
T Consensus 286 ~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 286 VFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred ceeccCCceeeecccccCceeeeeehhh
Confidence 3344678999999999999999877653
No 303
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.86 E-value=3e-08 Score=110.13 Aligned_cols=108 Identities=21% Similarity=0.299 Sum_probs=66.0
Q ss_pred ceecEEEEeCCCccchHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHH-HHHH
Q 001745 540 KLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERV-MQEL 618 (1018)
Q Consensus 540 k~~~ItfIDTPGHE~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv-~~eL 618 (1018)
.++.+.|+||+|.-.-. ...+..+|.++++.+...+ .....+.. ...++|.++++||+|+........ ...+
T Consensus 125 ~g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~~~~-~l~~~~~ivv~NK~Dl~~~~~~~~~~~~~ 197 (300)
T TIGR00750 125 AGYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQGIKA-GLMEIADIYVVNKADGEGATNVTIARLML 197 (300)
T ss_pred CCCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHHHHH-HHhhhccEEEEEcccccchhHHHHHHHHH
Confidence 35789999999953211 2345778998888643321 22222221 124788999999999975432221 1111
Q ss_pred ----HhcCCCCCCCCCCCcEEEEecCCCCChHHHHHHHHHHH
Q 001745 619 ----SSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLVA 656 (1018)
Q Consensus 619 ----~e~gl~~e~~g~~vpiVeISAktGeGIdeLleaIl~la 656 (1018)
....-....| ..+++++||++|+|+++|+++|....
T Consensus 198 ~~~l~~l~~~~~~~--~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 198 ALALEEIRRREDGW--RPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred HHHHhhccccccCC--CCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 1111111123 25799999999999999999997653
No 304
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.86 E-value=8.1e-10 Score=119.20 Aligned_cols=114 Identities=22% Similarity=0.277 Sum_probs=62.5
Q ss_pred cEEEEeCCCccchHHHHHhhh--------ccCCEEEEEEecCCCCChhHHH-----HHHHHHHcCCCEEEEEecCCCCCC
Q 001745 543 PCVFLDTPGHEAFGAMRARGA--------RVTDIAVIVVAADDGIRPQTNE-----AIAHAKAAGVPIVIAINKIDKDGA 609 (1018)
Q Consensus 543 ~ItfIDTPGHE~F~~~r~rg~--------~~ADiVILVVDAddGv~~QT~E-----~I~~ak~~gIPIIVVINKiDL~~a 609 (1018)
.+.++|||||..|-..+..+. ...=++++++|+..-..+...- .+......+.|.|.|+||+|+...
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 699999999987766655544 4456889999988644444321 112233469999999999999652
Q ss_pred ChHHHHHH-----------------H-HhcCCCCCCCCCCCcEEEEecCCCCChHHHHHHHHHHH
Q 001745 610 NPERVMQE-----------------L-SSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLVA 656 (1018)
Q Consensus 610 ~~erv~~e-----------------L-~e~gl~~e~~g~~vpiVeISAktGeGIdeLleaIl~la 656 (1018)
..+..... + .......+.++.-..++++|+.+++|+++|+..|....
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 21111111 1 11111233344334899999999999999999886543
No 305
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.84 E-value=3e-08 Score=99.76 Aligned_cols=156 Identities=17% Similarity=0.146 Sum_probs=107.6
Q ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCcee-eeeeEEEEEecCCceecEEEEeCCCccch-HHHHHhhhcc
Q 001745 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQ-GIGAYKVQVPVDGKLQPCVFLDTPGHEAF-GAMRARGARV 565 (1018)
Q Consensus 488 ~~r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTq-dIga~~V~i~~dgk~~~ItfIDTPGHE~F-~~~r~rg~~~ 565 (1018)
+-+..+|+++|.-++|||++|..|...+...+...-.|+ |+-...++.. .+..-.+.|.||.|...+ ..+-..+++.
T Consensus 6 mGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~-rgarE~l~lyDTaGlq~~~~eLprhy~q~ 84 (198)
T KOG3883|consen 6 MGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETD-RGAREQLRLYDTAGLQGGQQELPRHYFQF 84 (198)
T ss_pred hCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecC-CChhheEEEeecccccCchhhhhHhHhcc
Confidence 346789999999999999999999876655443333343 3322233322 233446999999997777 4555667799
Q ss_pred CCEEEEEEecCCCCChhHHHHHHHHH-----HcCCCEEEEEecCCCCC---CChHHHHHHHHhcCCCCCCCCCCCcEEEE
Q 001745 566 TDIAVIVVAADDGIRPQTNEAIAHAK-----AAGVPIVIAINKIDKDG---ANPERVMQELSSIGLMPEDWGGDIPMVQI 637 (1018)
Q Consensus 566 ADiVILVVDAddGv~~QT~E~I~~ak-----~~gIPIIVVINKiDL~~---a~~erv~~eL~e~gl~~e~~g~~vpiVeI 637 (1018)
+|+++|||+..+.-..|..+.++.-. ...+||+|++||+|+.+ .+.+....+.... .+..+++
T Consensus 85 aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rE---------kvkl~eV 155 (198)
T KOG3883|consen 85 ADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKRE---------KVKLWEV 155 (198)
T ss_pred CceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhh---------heeEEEE
Confidence 99999999999866666655554322 23589999999999942 1222222222221 3678999
Q ss_pred ecCCCCChHHHHHHHH
Q 001745 638 SALKGEKVDDLLETIM 653 (1018)
Q Consensus 638 SAktGeGIdeLleaIl 653 (1018)
+|.....+-+.|-.+.
T Consensus 156 ta~dR~sL~epf~~l~ 171 (198)
T KOG3883|consen 156 TAMDRPSLYEPFTYLA 171 (198)
T ss_pred EeccchhhhhHHHHHH
Confidence 9999999988888775
No 306
>PTZ00258 GTP-binding protein; Provisional
Probab=98.83 E-value=2.8e-08 Score=114.21 Aligned_cols=87 Identities=24% Similarity=0.198 Sum_probs=65.5
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCc--------------eecEEEEeCCCcc-
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGK--------------LQPCVFLDTPGHE- 553 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk--------------~~~ItfIDTPGHE- 553 (1018)
.+..+|+|+|.||+|||||+|+|++........+++|++.....+.+. +.. ..++.|+||||-.
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~-d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVP-DERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecc-cchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 456789999999999999999999888888888999987666555442 111 2359999999932
Q ss_pred ------chHHHHHhhhccCCEEEEEEecC
Q 001745 554 ------AFGAMRARGARVTDIAVIVVAAD 576 (1018)
Q Consensus 554 ------~F~~~r~rg~~~ADiVILVVDAd 576 (1018)
.+.......++.+|++++|+|+.
T Consensus 98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 98 GASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 12223344568899999999984
No 307
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.82 E-value=2.5e-08 Score=99.53 Aligned_cols=111 Identities=17% Similarity=0.258 Sum_probs=72.1
Q ss_pred EEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEE-------------E-------------------------
Q 001745 494 LTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQ-------------V------------------------- 535 (1018)
Q Consensus 494 VaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~-------------i------------------------- 535 (1018)
|+|+|..++|||||+|+|.+..+.......+|..+...... .
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 78999999999999999998765433322233211111100 0
Q ss_pred --------------ecCCceecEEEEeCCCcc----chHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHH-cCCC
Q 001745 536 --------------PVDGKLQPCVFLDTPGHE----AFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKA-AGVP 596 (1018)
Q Consensus 536 --------------~~dgk~~~ItfIDTPGHE----~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~-~gIP 596 (1018)
........+.|+||||-. ....+...++..+|++|+|+++......+..+.+..... ....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~ 160 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSR 160 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSS
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCe
Confidence 000112459999999942 233667788899999999999998777666665555544 3445
Q ss_pred EEEEEecC
Q 001745 597 IVIAINKI 604 (1018)
Q Consensus 597 IIVVINKi 604 (1018)
+|+|+||+
T Consensus 161 ~i~V~nk~ 168 (168)
T PF00350_consen 161 TIFVLNKA 168 (168)
T ss_dssp EEEEEE-G
T ss_pred EEEEEcCC
Confidence 99999995
No 308
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.82 E-value=6.8e-08 Score=104.21 Aligned_cols=151 Identities=19% Similarity=0.260 Sum_probs=89.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCccc-ccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHH-----HHhhhccC
Q 001745 493 VLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAM-----RARGARVT 566 (1018)
Q Consensus 493 kVaImGhvdvGKTTLLnrL~~~~v~-~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~-----r~rg~~~A 566 (1018)
+|++||..++||||....+...... ....-+.|.++....+.. .....+++||+||+..|... +...++.+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~---~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v 77 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRF---LSFLPLNIWDCPGQDDFMENYFNSQREEIFSNV 77 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEEC---TTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEec---CCCcEEEEEEcCCccccccccccccHHHHHhcc
Confidence 6899999999999999988765332 233345677776555542 24468999999999876554 45667999
Q ss_pred CEEEEEEecCCCCChhH----HHHHHHHHH--cCCCEEEEEecCCCCCCCh---------HHHHHHHHhcCCCCCCCCCC
Q 001745 567 DIAVIVVAADDGIRPQT----NEAIAHAKA--AGVPIVIAINKIDKDGANP---------ERVMQELSSIGLMPEDWGGD 631 (1018)
Q Consensus 567 DiVILVVDAddGv~~QT----~E~I~~ak~--~gIPIIVVINKiDL~~a~~---------erv~~eL~e~gl~~e~~g~~ 631 (1018)
+++|+|+|+...-.... ...+..+.. .++.+.|+++|+|+...+. +++...+...+.. .
T Consensus 78 ~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~------~ 151 (232)
T PF04670_consen 78 GVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIE------D 151 (232)
T ss_dssp SEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-T------S
T ss_pred CEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhcccc------c
Confidence 99999999984322222 223333333 3566999999999854222 1222233333321 4
Q ss_pred CcEEEEecCCCCChHHHHHHHH
Q 001745 632 IPMVQISALKGEKVDDLLETIM 653 (1018)
Q Consensus 632 vpiVeISAktGeGIdeLleaIl 653 (1018)
+.++.+|... +.|-+.+..|.
T Consensus 152 ~~~~~TSI~D-~Sly~A~S~Iv 172 (232)
T PF04670_consen 152 ITFFLTSIWD-ESLYEAWSKIV 172 (232)
T ss_dssp EEEEEE-TTS-THHHHHHHHHH
T ss_pred eEEEeccCcC-cHHHHHHHHHH
Confidence 7899999887 45555555554
No 309
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.81 E-value=8e-09 Score=121.02 Aligned_cols=148 Identities=20% Similarity=0.236 Sum_probs=102.9
Q ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHcCccccc---ccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhc
Q 001745 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAA---EAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGAR 564 (1018)
Q Consensus 488 ~~r~pkVaImGhvdvGKTTLLnrL~~~~v~~~---e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~ 564 (1018)
..+..+|+++|+.|+|||||+-.|....+... ..+.+| ++..+.-.....+++||+..+.-.......++
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~-------IPadvtPe~vpt~ivD~ss~~~~~~~l~~Eir 78 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRIL-------IPADVTPENVPTSIVDTSSDSDDRLCLRKEIR 78 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccc-------cCCccCcCcCceEEEecccccchhHHHHHHHh
Confidence 35667899999999999999999998766422 112222 22222234456899999976665666677889
Q ss_pred cCCEEEEEEecCC-----CCChhHHHHHHHHH--HcCCCEEEEEecCCCCCCChH-------HHHHHHHhcCCCCCCCCC
Q 001745 565 VTDIAVIVVAADD-----GIRPQTNEAIAHAK--AAGVPIVIAINKIDKDGANPE-------RVMQELSSIGLMPEDWGG 630 (1018)
Q Consensus 565 ~ADiVILVVDAdd-----Gv~~QT~E~I~~ak--~~gIPIIVVINKiDL~~a~~e-------rv~~eL~e~gl~~e~~g~ 630 (1018)
.||+++++++.++ +++..|+-+++... ..++|+|+|+||+|....+.. .++.++.+.
T Consensus 79 kA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~Ei--------- 149 (625)
T KOG1707|consen 79 KADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEI--------- 149 (625)
T ss_pred hcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHH---------
Confidence 9999999999887 44555555555543 247899999999998543222 222333332
Q ss_pred CCcEEEEecCCCCChHHHHHHH
Q 001745 631 DIPMVQISALKGEKVDDLLETI 652 (1018)
Q Consensus 631 ~vpiVeISAktGeGIdeLleaI 652 (1018)
-.+|+|||++-.++.++|...
T Consensus 150 -EtciecSA~~~~n~~e~fYya 170 (625)
T KOG1707|consen 150 -ETCIECSALTLANVSELFYYA 170 (625)
T ss_pred -HHHHhhhhhhhhhhHhhhhhh
Confidence 247999999999999988653
No 310
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.81 E-value=9.1e-09 Score=118.69 Aligned_cols=155 Identities=17% Similarity=0.168 Sum_probs=103.6
Q ss_pred hccCCCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCcc------chHHH
Q 001745 485 DKLEDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHE------AFGAM 558 (1018)
Q Consensus 485 ~~l~~r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE------~F~~~ 558 (1018)
..+....+.++++|-||+|||||++.++...+.+..+..+|..+-..++.+ +-..++++||||.- .-.-.
T Consensus 162 PsIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dy----kYlrwQViDTPGILD~plEdrN~IE 237 (620)
T KOG1490|consen 162 PAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDY----KYLRWQVIDTPGILDRPEEDRNIIE 237 (620)
T ss_pred CCCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhh----heeeeeecCCccccCcchhhhhHHH
Confidence 344567789999999999999999999999888888888887764444332 33568999999931 11112
Q ss_pred HHh---hhccCCEEEEEEecCCCCChhHHHHH---HHHH--HcCCCEEEEEecCCCCC-CChH----HHHHHHHhcCCCC
Q 001745 559 RAR---GARVTDIAVIVVAADDGIRPQTNEAI---AHAK--AAGVPIVIAINKIDKDG-ANPE----RVMQELSSIGLMP 625 (1018)
Q Consensus 559 r~r---g~~~ADiVILVVDAddGv~~QT~E~I---~~ak--~~gIPIIVVINKiDL~~-a~~e----rv~~eL~e~gl~~ 625 (1018)
+.. .++.--+|+++.|.++.......+.+ +.++ -.+.|+|+|+||||+.. .+.. ++.+.+...+
T Consensus 238 mqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~--- 314 (620)
T KOG1490|consen 238 MQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDG--- 314 (620)
T ss_pred HHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhcc---
Confidence 222 12444578999999873322222222 2222 15889999999999843 2222 3334443332
Q ss_pred CCCCCCCcEEEEecCCCCChHHHHHH
Q 001745 626 EDWGGDIPMVQISALKGEKVDDLLET 651 (1018)
Q Consensus 626 e~~g~~vpiVeISAktGeGIdeLlea 651 (1018)
.++++.+|+.+.+|+.++...
T Consensus 315 -----~v~v~~tS~~~eegVm~Vrt~ 335 (620)
T KOG1490|consen 315 -----NVKVVQTSCVQEEGVMDVRTT 335 (620)
T ss_pred -----CceEEEecccchhceeeHHHH
Confidence 478999999999999886543
No 311
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.81 E-value=2.1e-08 Score=105.22 Aligned_cols=151 Identities=21% Similarity=0.230 Sum_probs=88.2
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcC--c---cc--ccccC-Cce----eeeeeEEEEEe------------------cCC
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKT--K---VA--AAEAG-GIT----QGIGAYKVQVP------------------VDG 539 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~--~---v~--~~e~g-GiT----qdIga~~V~i~------------------~dg 539 (1018)
.+++|+|+|+.|+|||||++++... . +. ..+.. ++. +..+...+.+. ...
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~ 100 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPL 100 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhcc
Confidence 5788999999999999999998643 1 00 01100 000 00001111110 000
Q ss_pred ceecEEEEeCCCccchHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCC---hHHHHH
Q 001745 540 KLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN---PERVMQ 616 (1018)
Q Consensus 540 k~~~ItfIDTPGHE~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~---~erv~~ 616 (1018)
.+..+.|++|.|.-... ..+....+..+.|+|+.++...+. ......+.|.++++||+|+.+.. ..++..
T Consensus 101 ~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~~----~~~~~~~~a~iiv~NK~Dl~~~~~~~~~~~~~ 173 (207)
T TIGR00073 101 DDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKPL----KYPGMFKEADLIVINKADLAEAVGFDVEKMKA 173 (207)
T ss_pred CCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccchhh----hhHhHHhhCCEEEEEHHHccccchhhHHHHHH
Confidence 13467888888821111 111223566677888876543222 22233467889999999996532 234444
Q ss_pred HHHhcCCCCCCCCCCCcEEEEecCCCCChHHHHHHHHH
Q 001745 617 ELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIML 654 (1018)
Q Consensus 617 eL~e~gl~~e~~g~~vpiVeISAktGeGIdeLleaIl~ 654 (1018)
.+.... ...+++++||++|.|+++++++|..
T Consensus 174 ~l~~~~-------~~~~i~~~Sa~~g~gv~~l~~~i~~ 204 (207)
T TIGR00073 174 DAKKIN-------PEAEIILMSLKTGEGLDEWLEFLEG 204 (207)
T ss_pred HHHHhC-------CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 444432 2478999999999999999999864
No 312
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.80 E-value=1.1e-07 Score=103.15 Aligned_cols=130 Identities=15% Similarity=0.192 Sum_probs=86.3
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeee---------EEEEE-------------------------
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGA---------YKVQV------------------------- 535 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga---------~~V~i------------------------- 535 (1018)
..|.|+++|+.++|||||+++|.+..+.....+.+|+.... |...+
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 104 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT 104 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence 56789999999999999999998764322222222211000 00000
Q ss_pred -------------ec-CCceecEEEEeCCCccc-------------hHHHHHhhhc-cCCEEEEEEecCCCCChhH-HHH
Q 001745 536 -------------PV-DGKLQPCVFLDTPGHEA-------------FGAMRARGAR-VTDIAVIVVAADDGIRPQT-NEA 586 (1018)
Q Consensus 536 -------------~~-dgk~~~ItfIDTPGHE~-------------F~~~r~rg~~-~ADiVILVVDAddGv~~QT-~E~ 586 (1018)
.+ .-....++|+||||-.. ...+...+++ ..+++++|+|+..++..+. .+.
T Consensus 105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~i 184 (240)
T smart00053 105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKL 184 (240)
T ss_pred CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHH
Confidence 00 00125699999999531 2234556666 5569999999998888777 688
Q ss_pred HHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHh
Q 001745 587 IAHAKAAGVPIVIAINKIDKDGANPERVMQELSS 620 (1018)
Q Consensus 587 I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e 620 (1018)
++.+...+.|+|+|+||+|......+ +...+..
T Consensus 185 a~~ld~~~~rti~ViTK~D~~~~~~~-~~~~~~~ 217 (240)
T smart00053 185 AKEVDPQGERTIGVITKLDLMDEGTD-ARDILEN 217 (240)
T ss_pred HHHHHHcCCcEEEEEECCCCCCccHH-HHHHHhC
Confidence 88888889999999999999654444 5555544
No 313
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.79 E-value=7.2e-08 Score=110.58 Aligned_cols=155 Identities=19% Similarity=0.330 Sum_probs=101.5
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcC----ccc------------ccccCC---ceeeeee---EEEEEec-CCceecEEEE
Q 001745 491 PPVLTIMGHVDHGKTTLLDHIRKT----KVA------------AAEAGG---ITQGIGA---YKVQVPV-DGKLQPCVFL 547 (1018)
Q Consensus 491 ~pkVaImGhvdvGKTTLLnrL~~~----~v~------------~~e~gG---iTqdIga---~~V~i~~-dgk~~~ItfI 547 (1018)
-..|+|+|++++|||||+++|... +.. .....| +|.+.-+ ..+++.. ++-...+.|+
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI 96 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV 96 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence 357999999999999999999876 332 234456 5655544 3444432 3445689999
Q ss_pred eCCCcc--------c-----------------hHHH----HHhhhc-cCCEEEEEE-ecC------CCCChhHHHHHHHH
Q 001745 548 DTPGHE--------A-----------------FGAM----RARGAR-VTDIAVIVV-AAD------DGIRPQTNEAIAHA 590 (1018)
Q Consensus 548 DTPGHE--------~-----------------F~~~----r~rg~~-~ADiVILVV-DAd------dGv~~QT~E~I~~a 590 (1018)
||+|.. + |..- ....+. .+|+.|+|. |.+ ++......+.+..+
T Consensus 97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL 176 (492)
T TIGR02836 97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL 176 (492)
T ss_pred ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence 999921 1 1111 222344 899999999 775 34556667888999
Q ss_pred HHcCCCEEEEEecCCCCCCChHHHHHHHHhcCCCCCCCCCCCcEEEEecCC--CCChHHHHHHHH
Q 001745 591 KAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALK--GEKVDDLLETIM 653 (1018)
Q Consensus 591 k~~gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~e~~g~~vpiVeISAkt--GeGIdeLleaIl 653 (1018)
+..++|+|+++||+|-.......+...+.+. + ++|++++|+.+ -+.|..+|+.++
T Consensus 177 k~~~kPfiivlN~~dp~~~et~~l~~~l~ek------y--~vpvl~v~c~~l~~~DI~~il~~vL 233 (492)
T TIGR02836 177 KELNKPFIILLNSTHPYHPETEALRQELEEK------Y--DVPVLAMDVESMRESDILSVLEEVL 233 (492)
T ss_pred HhcCCCEEEEEECcCCCCchhHHHHHHHHHH------h--CCceEEEEHHHcCHHHHHHHHHHHH
Confidence 9999999999999994322233344444321 1 26778888754 345666666654
No 314
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.79 E-value=9.3e-08 Score=104.05 Aligned_cols=117 Identities=15% Similarity=0.092 Sum_probs=77.5
Q ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHcCccc-ccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchH-----H---
Q 001745 487 LEDRPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFG-----A--- 557 (1018)
Q Consensus 487 l~~r~pkVaImGhvdvGKTTLLnrL~~~~v~-~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~-----~--- 557 (1018)
....+.+|+++|.+|+|||||+|+|.+.... .....+.|.....+... . .+..++||||||-.... .
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~--~--~g~~i~vIDTPGl~~~~~~~~~~~~~ 102 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGT--V--DGFKLNIIDTPGLLESVMDQRVNRKI 102 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEE--E--CCeEEEEEECCCcCcchhhHHHHHHH
Confidence 3456789999999999999999999987643 33344566665554433 2 34679999999954431 0
Q ss_pred --HHHhhh--ccCCEEEEEEecCC-CCChhHHHHHHHHHH-cC----CCEEEEEecCCCC
Q 001745 558 --MRARGA--RVTDIAVIVVAADD-GIRPQTNEAIAHAKA-AG----VPIVIAINKIDKD 607 (1018)
Q Consensus 558 --~r~rg~--~~ADiVILVVDAdd-Gv~~QT~E~I~~ak~-~g----IPIIVVINKiDL~ 607 (1018)
...+++ ...|++++|..++. .........++.+.. ++ .++|+|+||+|..
T Consensus 103 ~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~ 162 (249)
T cd01853 103 LSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASS 162 (249)
T ss_pred HHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccC
Confidence 012233 25788888876664 334444555555543 23 4699999999983
No 315
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.76 E-value=6.1e-08 Score=101.95 Aligned_cols=97 Identities=19% Similarity=0.353 Sum_probs=64.3
Q ss_pred ecEEEEeCCCccchHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCE--EEEEecCCCCC---CChHHHHH
Q 001745 542 QPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPI--VIAINKIDKDG---ANPERVMQ 616 (1018)
Q Consensus 542 ~~ItfIDTPGHE~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPI--IVVINKiDL~~---a~~erv~~ 616 (1018)
....|++|.|..--.... ...+|.+|+|+|+.++...+.. . ...+.+ ++++||+|+.. .+.+.+.+
T Consensus 92 ~D~iiIEt~G~~l~~~~~---~~l~~~~i~vvD~~~~~~~~~~-~-----~~qi~~ad~~~~~k~d~~~~~~~~~~~~~~ 162 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFS---PELADLTIFVIDVAAGDKIPRK-G-----GPGITRSDLLVINKIDLAPMVGADLGVMER 162 (199)
T ss_pred CCEEEEECCCCCcccccc---hhhhCcEEEEEEcchhhhhhhh-h-----HhHhhhccEEEEEhhhccccccccHHHHHH
Confidence 467899999821100001 1236889999999875442211 0 123334 89999999964 34555566
Q ss_pred HHHhcCCCCCCCCCCCcEEEEecCCCCChHHHHHHHHH
Q 001745 617 ELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIML 654 (1018)
Q Consensus 617 eL~e~gl~~e~~g~~vpiVeISAktGeGIdeLleaIl~ 654 (1018)
.+.... ...+++++||++|+|+++++++|..
T Consensus 163 ~~~~~~-------~~~~i~~~Sa~~g~gi~el~~~i~~ 193 (199)
T TIGR00101 163 DAKKMR-------GEKPFIFTNLKTKEGLDTVIDWIEH 193 (199)
T ss_pred HHHHhC-------CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 666542 2478999999999999999999964
No 316
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=98.74 E-value=1.9e-08 Score=101.43 Aligned_cols=156 Identities=13% Similarity=0.131 Sum_probs=115.3
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEE
Q 001745 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (1018)
Q Consensus 491 ~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVI 570 (1018)
..+|.++|++..|||||+-.+.++... +....|.++.+....+.+.+....+.+||..|+++|..|..-....+-+++
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~d--e~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIl 97 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEYD--EEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAIL 97 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchhH--HHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEE
Confidence 357999999999999999998877664 223345566666666677888889999999999999999999999999999
Q ss_pred EEEecCCCCC-hhHHHHHHHHHHcCCC--EEEEEecCCCCCC----ChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCC
Q 001745 571 IVVAADDGIR-PQTNEAIAHAKAAGVP--IVIAINKIDKDGA----NPERVMQELSSIGLMPEDWGGDIPMVQISALKGE 643 (1018)
Q Consensus 571 LVVDAddGv~-~QT~E~I~~ak~~gIP--IIVVINKiDL~~a----~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGe 643 (1018)
+++|.+.... ....++.++++..+.. -|++++|.|+.-. ..+.+..+...+... -+.+.|.||+-...
T Consensus 98 FmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~-----mnAsL~F~Sts~sI 172 (205)
T KOG1673|consen 98 FMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKYAKV-----MNASLFFCSTSHSI 172 (205)
T ss_pred EEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHH-----hCCcEEEeeccccc
Confidence 9999987433 2335667777776543 4788999997321 222333333332211 14678999999999
Q ss_pred ChHHHHHHHH
Q 001745 644 KVDDLLETIM 653 (1018)
Q Consensus 644 GIdeLleaIl 653 (1018)
|+...|..++
T Consensus 173 Nv~KIFK~vl 182 (205)
T KOG1673|consen 173 NVQKIFKIVL 182 (205)
T ss_pred cHHHHHHHHH
Confidence 9999998764
No 317
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.71 E-value=3.1e-08 Score=113.13 Aligned_cols=156 Identities=17% Similarity=0.279 Sum_probs=88.2
Q ss_pred hccCCCCCEEEEEeCCCCCHHHHHHHHHcCccc-----ccccCCceeeeeeEEEEEecCCceecEEEEeCCCcc--chH-
Q 001745 485 DKLEDRPPVLTIMGHVDHGKTTLLDHIRKTKVA-----AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHE--AFG- 556 (1018)
Q Consensus 485 ~~l~~r~pkVaImGhvdvGKTTLLnrL~~~~v~-----~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE--~F~- 556 (1018)
..+..-+.+|+|+|.+|+|||||+|+|++-... ....-.+|.....|..+ +...++|||.||.. .|.
T Consensus 29 ~~~~~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p-----~~pnv~lWDlPG~gt~~f~~ 103 (376)
T PF05049_consen 29 KDIDNAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHP-----KFPNVTLWDLPGIGTPNFPP 103 (376)
T ss_dssp HHHHH--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-S-----S-TTEEEEEE--GGGSS--H
T ss_pred HHhhcCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCC-----CCCCCeEEeCCCCCCCCCCH
Confidence 334456779999999999999999999853211 11111245554444432 22369999999953 222
Q ss_pred --HHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCC----------CCChHHHHHHHH-----
Q 001745 557 --AMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKD----------GANPERVMQELS----- 619 (1018)
Q Consensus 557 --~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~----------~a~~erv~~eL~----- 619 (1018)
.+-...+...|.+|++.+ +.+........+.++..+.|+.+|-+|+|.. ..+.+++.+++.
T Consensus 104 ~~Yl~~~~~~~yD~fiii~s--~rf~~ndv~La~~i~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~ 181 (376)
T PF05049_consen 104 EEYLKEVKFYRYDFFIIISS--ERFTENDVQLAKEIQRMGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLE 181 (376)
T ss_dssp HHHHHHTTGGG-SEEEEEES--SS--HHHHHHHHHHHHTT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHH
T ss_pred HHHHHHccccccCEEEEEeC--CCCchhhHHHHHHHHHcCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHH
Confidence 222335678898888765 4566777788888899999999999999961 123344433333
Q ss_pred ---hcCCCCCCCCCCCcEEEEecCCC--CChHHHHHHHH
Q 001745 620 ---SIGLMPEDWGGDIPMVQISALKG--EKVDDLLETIM 653 (1018)
Q Consensus 620 ---e~gl~~e~~g~~vpiVeISAktG--eGIdeLleaIl 653 (1018)
..++ ...++|-+|+..- ..+..|.+.|.
T Consensus 182 ~L~k~gv------~~P~VFLVS~~dl~~yDFp~L~~tL~ 214 (376)
T PF05049_consen 182 NLQKAGV------SEPQVFLVSSFDLSKYDFPKLEETLE 214 (376)
T ss_dssp HHHCTT-------SS--EEEB-TTTTTSTTHHHHHHHHH
T ss_pred HHHHcCC------CcCceEEEeCCCcccCChHHHHHHHH
Confidence 3332 2468999998864 34677888775
No 318
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.66 E-value=6.7e-08 Score=107.11 Aligned_cols=146 Identities=24% Similarity=0.318 Sum_probs=103.3
Q ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCc---------cchHHH
Q 001745 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH---------EAFGAM 558 (1018)
Q Consensus 488 ~~r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGH---------E~F~~~ 558 (1018)
....|+|+++|..|+|||||+++|++..+...+.-.-|.|.+.....++ .+..+.|.||-|. ++|...
T Consensus 175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lp---sg~~vlltDTvGFisdLP~~LvaAF~AT 251 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLP---SGNFVLLTDTVGFISDLPIQLVAAFQAT 251 (410)
T ss_pred cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCC---CCcEEEEeechhhhhhCcHHHHHHHHHH
Confidence 3456899999999999999999999766655555556666665565554 2346899999992 445444
Q ss_pred HHhhhccCCEEEEEEecCCCCChhH-HHHHHHHHHcCCC-------EEEEEecCCCCCCChHHHHHHHHhcCCCCCCCCC
Q 001745 559 RARGARVTDIAVIVVAADDGIRPQT-NEAIAHAKAAGVP-------IVIAINKIDKDGANPERVMQELSSIGLMPEDWGG 630 (1018)
Q Consensus 559 r~rg~~~ADiVILVVDAddGv~~QT-~E~I~~ak~~gIP-------IIVVINKiDL~~a~~erv~~eL~e~gl~~e~~g~ 630 (1018)
. .....+|+++.|+|++++.-.+- ...+..++..++| +|=|-||+|..... ...+
T Consensus 252 L-eeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~-------------~e~E--- 314 (410)
T KOG0410|consen 252 L-EEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDE-------------VEEE--- 314 (410)
T ss_pred H-HHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccccccc-------------Cccc---
Confidence 3 33467899999999998654443 4445566667775 67788899874211 1111
Q ss_pred CCcEEEEecCCCCChHHHHHHHH
Q 001745 631 DIPMVQISALKGEKVDDLLETIM 653 (1018)
Q Consensus 631 ~vpiVeISAktGeGIdeLleaIl 653 (1018)
....+++||++|+|+++|++++.
T Consensus 315 ~n~~v~isaltgdgl~el~~a~~ 337 (410)
T KOG0410|consen 315 KNLDVGISALTGDGLEELLKAEE 337 (410)
T ss_pred cCCccccccccCccHHHHHHHHH
Confidence 12268999999999999999875
No 319
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.66 E-value=2.9e-07 Score=105.08 Aligned_cols=85 Identities=26% Similarity=0.172 Sum_probs=62.2
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecC--------C-----ceecEEEEeCCCccc----
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVD--------G-----KLQPCVFLDTPGHEA---- 554 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~d--------g-----k~~~ItfIDTPGHE~---- 554 (1018)
++|+|+|.||+|||||+|+|++.+......+++|++.....+.+.-. . ....+.|+||||-..
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 57999999999999999999998877778889997765444443211 0 012599999999321
Q ss_pred ---hHHHHHhhhccCCEEEEEEecC
Q 001745 555 ---FGAMRARGARVTDIAVIVVAAD 576 (1018)
Q Consensus 555 ---F~~~r~rg~~~ADiVILVVDAd 576 (1018)
+.......++.+|++++|||+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 2223334568999999999985
No 320
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=98.64 E-value=5.5e-09 Score=107.92 Aligned_cols=154 Identities=17% Similarity=0.184 Sum_probs=106.4
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEec-CCceecEEEEeCCCccchHHHHHhhhccCCEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPV-DGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~-dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVI 570 (1018)
.++.|+|.-++|||+++.++...++...... |++..+....+.+ +..-.++.+||.+|+++|..|..-+++.+.++.
T Consensus 26 ~k~lVig~~~vgkts~i~ryv~~nfs~~yRA--tIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~ 103 (229)
T KOG4423|consen 26 FKVLVIGDLGVGKTSSIKRYVHQNFSYHYRA--TIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAF 103 (229)
T ss_pred hhhheeeeccccchhHHHHHHHHHHHHHHHH--HHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceE
Confidence 4689999999999999999887766544333 3333322222222 233467899999999999999999999999999
Q ss_pred EEEecCCCCChhHHHHH-HHHH----H-cC--CCEEEEEecCCCCCCC----hHHHHHHHHhcCCCCCCCCCCCcEEEEe
Q 001745 571 IVVAADDGIRPQTNEAI-AHAK----A-AG--VPIVIAINKIDKDGAN----PERVMQELSSIGLMPEDWGGDIPMVQIS 638 (1018)
Q Consensus 571 LVVDAddGv~~QT~E~I-~~ak----~-~g--IPIIVVINKiDL~~a~----~erv~~eL~e~gl~~e~~g~~vpiVeIS 638 (1018)
+|||++......-...+ +.+. . .+ +|+++..||||..... ...+-+...++++ .-++++|
T Consensus 104 iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf--------~gwtets 175 (229)
T KOG4423|consen 104 IVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGF--------EGWTETS 175 (229)
T ss_pred EEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCc--------cceeeec
Confidence 99999975543332222 2111 1 23 4689999999985432 2233333334444 4589999
Q ss_pred cCCCCChHHHHHHHHHH
Q 001745 639 ALKGEKVDDLLETIMLV 655 (1018)
Q Consensus 639 AktGeGIdeLleaIl~l 655 (1018)
||.+.||+|..+.+...
T Consensus 176 ~Kenkni~Ea~r~lVe~ 192 (229)
T KOG4423|consen 176 AKENKNIPEAQRELVEK 192 (229)
T ss_pred cccccChhHHHHHHHHH
Confidence 99999999988877643
No 321
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.58 E-value=9e-07 Score=99.09 Aligned_cols=115 Identities=15% Similarity=0.110 Sum_probs=71.2
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCcccc-cccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHH-------
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAA-AEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRA------- 560 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~~v~~-~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~------- 560 (1018)
...++|+++|.+|+|||||+|+|.+..... +...+.|..... ..... .+..+++|||||.........
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~--~~~~~--~G~~l~VIDTPGL~d~~~~~e~~~~~ik 111 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMM--VSRTR--AGFTLNIIDTPGLIEGGYINDQAVNIIK 111 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEE--EEEEE--CCeEEEEEECCCCCchHHHHHHHHHHHH
Confidence 456899999999999999999999876532 222222222211 11222 356899999999654322111
Q ss_pred hhh--ccCCEEEEEEecCC-CCChhHHHHHHHHHH-c----CCCEEEEEecCCCC
Q 001745 561 RGA--RVTDIAVIVVAADD-GIRPQTNEAIAHAKA-A----GVPIVIAINKIDKD 607 (1018)
Q Consensus 561 rg~--~~ADiVILVVDAdd-Gv~~QT~E~I~~ak~-~----gIPIIVVINKiDL~ 607 (1018)
.++ ...|++|||...+. .........++.+.. + -.++||++|+.|..
T Consensus 112 ~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 112 RFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred HHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence 111 25899999966553 244344444444432 1 24699999999964
No 322
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.58 E-value=2.3e-07 Score=101.17 Aligned_cols=158 Identities=25% Similarity=0.375 Sum_probs=89.5
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcC------cccc---ccc----CC-----------ceeeeeeEEEEEecC------
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKT------KVAA---AEA----GG-----------ITQGIGAYKVQVPVD------ 538 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~------~v~~---~e~----gG-----------iTqdIga~~V~i~~d------ 538 (1018)
.+.++|+|.|.||+|||||++.|... ++.+ .+. +| ...|-+.|--.+...
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl 106 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL 106 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence 46789999999999999999998521 2211 110 10 112333343333221
Q ss_pred ------------CceecEEEEeCCCccchHHHHHhhhccCCEEEEEEecCCCCChhHH--HHHHHHHHcCCCEEEEEecC
Q 001745 539 ------------GKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTN--EAIAHAKAAGVPIVIAINKI 604 (1018)
Q Consensus 539 ------------gk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVILVVDAddGv~~QT~--E~I~~ak~~gIPIIVVINKi 604 (1018)
..++.+.|+.|-|.-.-. ..-...+|.+++|+...-|-.-|.. -+++. .=|+|+||+
T Consensus 107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi------aDi~vVNKa 177 (266)
T PF03308_consen 107 SRATRDAVRLLDAAGFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIMEI------ADIFVVNKA 177 (266)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-------SEEEEE--
T ss_pred cHhHHHHHHHHHHcCCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhhhh------ccEEEEeCC
Confidence 134779999998832211 2235789999999987765554442 23333 339999999
Q ss_pred CCCCCCh--HHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCChHHHHHHHHHHHH
Q 001745 605 DKDGANP--ERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLVAE 657 (1018)
Q Consensus 605 DL~~a~~--erv~~eL~e~gl~~e~~g~~vpiVeISAktGeGIdeLleaIl~lae 657 (1018)
|++++.. .++...+.-..-....| ..|++.+||.+|.||++|+++|.....
T Consensus 178 D~~gA~~~~~~l~~~l~l~~~~~~~W--~ppV~~tsA~~~~Gi~eL~~~i~~~~~ 230 (266)
T PF03308_consen 178 DRPGADRTVRDLRSMLHLLREREDGW--RPPVLKTSALEGEGIDELWEAIDEHRD 230 (266)
T ss_dssp SHHHHHHHHHHHHHHHHHCSTSCTSB----EEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhhccccccCC--CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 9754321 11222222222223344 479999999999999999999976544
No 323
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.57 E-value=5.8e-07 Score=99.35 Aligned_cols=165 Identities=24% Similarity=0.323 Sum_probs=99.3
Q ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHcC------cccc---cc----cC-----------CceeeeeeEEEEEec------
Q 001745 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT------KVAA---AE----AG-----------GITQGIGAYKVQVPV------ 537 (1018)
Q Consensus 488 ~~r~pkVaImGhvdvGKTTLLnrL~~~------~v~~---~e----~g-----------GiTqdIga~~V~i~~------ 537 (1018)
..++++|+|.|.||+|||||++.|... ++.+ .+ .+ .++.+.+.|--.+..
T Consensus 48 tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGG 127 (323)
T COG1703 48 TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGG 127 (323)
T ss_pred CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchh
Confidence 457889999999999999999998521 1211 11 11 122334444433321
Q ss_pred ------------CCceecEEEEeCCCccchHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCC
Q 001745 538 ------------DGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKID 605 (1018)
Q Consensus 538 ------------dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiD 605 (1018)
+..++.+.|+.|-|.-.-. ..-...+|.+++|.-..-|-.-|.+.. -...+-=|+|+||.|
T Consensus 128 lS~at~~~i~~ldAaG~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~----GimEiaDi~vINKaD 200 (323)
T COG1703 128 LSRATREAIKLLDAAGYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKA----GIMEIADIIVINKAD 200 (323)
T ss_pred hhHHHHHHHHHHHhcCCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHh----hhhhhhheeeEeccC
Confidence 2245778999998832211 223467899999886655554554321 012233499999999
Q ss_pred CCCCCh--HHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCChHHHHHHHHHHHHHh
Q 001745 606 KDGANP--ERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLVAELQ 659 (1018)
Q Consensus 606 L~~a~~--erv~~eL~e~gl~~e~~g~~vpiVeISAktGeGIdeLleaIl~lael~ 659 (1018)
+.++.. ..+...+..........+...|++.+||.+|+||++|+++|....+..
T Consensus 201 ~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~ 256 (323)
T COG1703 201 RKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFL 256 (323)
T ss_pred hhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHH
Confidence 755322 112222222211122233468999999999999999999998665543
No 324
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.56 E-value=3.8e-07 Score=90.91 Aligned_cols=94 Identities=24% Similarity=0.226 Sum_probs=67.8
Q ss_pred hHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHhcCCCCCCCCCCCcE
Q 001745 555 FGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPM 634 (1018)
Q Consensus 555 F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~e~~g~~vpi 634 (1018)
+..+..+....+|++|+|+|+.++...+..+....+...+.|+|+++||+|+... .... .+.... .. ...++
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~--~~~~-~~~~~~---~~--~~~~~ 73 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPK--EVLE-KWKSIK---ES--EGIPV 73 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCH--HHHH-HHHHHH---Hh--CCCcE
Confidence 4556677778899999999998877666666666666678999999999999532 1111 111110 01 12579
Q ss_pred EEEecCCCCChHHHHHHHHHHH
Q 001745 635 VQISALKGEKVDDLLETIMLVA 656 (1018)
Q Consensus 635 VeISAktGeGIdeLleaIl~la 656 (1018)
+++||++|.|+++|++.|....
T Consensus 74 ~~iSa~~~~gi~~L~~~l~~~~ 95 (156)
T cd01859 74 VYVSAKERLGTKILRRTIKELA 95 (156)
T ss_pred EEEEccccccHHHHHHHHHHHH
Confidence 9999999999999999987543
No 325
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.50 E-value=9.4e-07 Score=92.72 Aligned_cols=96 Identities=21% Similarity=0.338 Sum_probs=60.9
Q ss_pred cEEEEeCCCccchHHHHHhhhccCC-EEEEEEecCCCCChhHH--HHHHHHHHcCCCEEEEEecCCCC---CCChHHHHH
Q 001745 543 PCVFLDTPGHEAFGAMRARGARVTD-IAVIVVAADDGIRPQTN--EAIAHAKAAGVPIVIAINKIDKD---GANPERVMQ 616 (1018)
Q Consensus 543 ~ItfIDTPGHE~F~~~r~rg~~~AD-iVILVVDAddGv~~QT~--E~I~~ak~~gIPIIVVINKiDL~---~a~~erv~~ 616 (1018)
.+.|+...|. .. ........| .-|+|+|+.+|..---+ ..+. . .=++++||.|+. +++.+.+..
T Consensus 98 Dll~iEs~GN--L~--~~~sp~L~d~~~v~VidvteGe~~P~K~gP~i~-----~-aDllVInK~DLa~~v~~dlevm~~ 167 (202)
T COG0378 98 DLLFIESVGN--LV--CPFSPDLGDHLRVVVIDVTEGEDIPRKGGPGIF-----K-ADLLVINKTDLAPYVGADLEVMAR 167 (202)
T ss_pred CEEEEecCcc--ee--cccCcchhhceEEEEEECCCCCCCcccCCCcee-----E-eeEEEEehHHhHHHhCccHHHHHH
Confidence 4666666661 00 001123344 78889999886432111 0000 0 248999999993 456666666
Q ss_pred HHHhcCCCCCCCCCCCcEEEEecCCCCChHHHHHHHHHH
Q 001745 617 ELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLV 655 (1018)
Q Consensus 617 eL~e~gl~~e~~g~~vpiVeISAktGeGIdeLleaIl~l 655 (1018)
...+.. ++.+||++|+++|+|+++++++|...
T Consensus 168 da~~~n-------p~~~ii~~n~ktg~G~~~~~~~i~~~ 199 (202)
T COG0378 168 DAKEVN-------PEAPIIFTNLKTGEGLDEWLRFIEPQ 199 (202)
T ss_pred HHHHhC-------CCCCEEEEeCCCCcCHHHHHHHHHhh
Confidence 665543 46899999999999999999998643
No 326
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.44 E-value=2.8e-06 Score=89.94 Aligned_cols=111 Identities=19% Similarity=0.243 Sum_probs=69.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcccccc--cCCceeeeeeEEEEEecCCceecEEEEeCCCcc-------chHHHHHh--
Q 001745 493 VLTIMGHVDHGKTTLLDHIRKTKVAAAE--AGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHE-------AFGAMRAR-- 561 (1018)
Q Consensus 493 kVaImGhvdvGKTTLLnrL~~~~v~~~e--~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE-------~F~~~r~r-- 561 (1018)
+|+++|..|+||||+.|.|++....... ....|+....+... ++ +..+++|||||-- .......+
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~--~~--g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l 77 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGE--VD--GRQVTVIDTPGLFDSDGSDEEIIREIKRCL 77 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEE--ET--TEEEEEEE--SSEETTEEHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeee--ec--ceEEEEEeCCCCCCCcccHHHHHHHHHHHH
Confidence 6999999999999999999987654332 23456655544443 23 4679999999931 11122222
Q ss_pred --hhccCCEEEEEEecCCCCChhHHHHHHHHHH-cC----CCEEEEEecCCCCC
Q 001745 562 --GARVTDIAVIVVAADDGIRPQTNEAIAHAKA-AG----VPIVIAINKIDKDG 608 (1018)
Q Consensus 562 --g~~~ADiVILVVDAddGv~~QT~E~I~~ak~-~g----IPIIVVINKiDL~~ 608 (1018)
.....|++|||+.++ .+.......++.+.. ++ .-+||+.+..|...
T Consensus 78 ~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~ 130 (212)
T PF04548_consen 78 SLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELE 130 (212)
T ss_dssp HHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGT
T ss_pred HhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccc
Confidence 235689999999998 666666666665543 23 23889999988643
No 327
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.43 E-value=4.1e-07 Score=100.98 Aligned_cols=151 Identities=20% Similarity=0.232 Sum_probs=82.2
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCc-----cc--ccccCCcee--------eeeeEEEEE----------------ec
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKTK-----VA--AAEAGGITQ--------GIGAYKVQV----------------PV 537 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~~-----v~--~~e~gGiTq--------dIga~~V~i----------------~~ 537 (1018)
.....|.|+|.+|+|||||++++...- +. ..+. ++.. ++....+.. .+
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~-~t~~Da~rI~~~g~pvvqi~tG~~Chl~a~mv~~Al~~L 180 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQ-QTVNDAARIRATGTPAIQVNTGKGCHLDAQMIADAAPRL 180 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCc-CcHHHHHHHHhcCCcEEEecCCCCCcCcHHHHHHHHHHH
Confidence 356789999999999999998876421 11 1111 0000 011111110 00
Q ss_pred CCceecEEEEeCCCccchHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCC---ChHHH
Q 001745 538 DGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGA---NPERV 614 (1018)
Q Consensus 538 dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a---~~erv 614 (1018)
+.....+.||++-|.-...... -+ ..+.-+.++++.++... .+++-.....+-++++||+|+... +.+.+
T Consensus 181 ~~~~~d~liIEnvGnLvcPa~f--dl-ge~~~v~vlsV~eg~dk----plKyp~~f~~ADIVVLNKiDLl~~~~~dle~~ 253 (290)
T PRK10463 181 PLDDNGILFIENVGNLVCPASF--DL-GEKHKVAVLSVTEGEDK----PLKYPHMFAAASLMLLNKVDLLPYLNFDVEKC 253 (290)
T ss_pred hhcCCcEEEEECCCCccCCCcc--ch-hhceeEEEEECcccccc----chhccchhhcCcEEEEEhHHcCcccHHHHHHH
Confidence 1122346677776631100000 00 11233466666655321 111212234567999999999643 34444
Q ss_pred HHHHHhcCCCCCCCCCCCcEEEEecCCCCChHHHHHHHHH
Q 001745 615 MQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLETIML 654 (1018)
Q Consensus 615 ~~eL~e~gl~~e~~g~~vpiVeISAktGeGIdeLleaIl~ 654 (1018)
...+.... ...+++++||++|+|+++|+++|..
T Consensus 254 ~~~lr~ln-------p~a~I~~vSA~tGeGld~L~~~L~~ 286 (290)
T PRK10463 254 IACAREVN-------PEIEIILISATSGEGMDQWLNWLET 286 (290)
T ss_pred HHHHHhhC-------CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 44444432 2478999999999999999999964
No 328
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.38 E-value=2.1e-06 Score=88.58 Aligned_cols=104 Identities=20% Similarity=0.140 Sum_probs=67.3
Q ss_pred CCccchHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCCh--HHHHHHHHhcCCCCCC
Q 001745 550 PGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANP--ERVMQELSSIGLMPED 627 (1018)
Q Consensus 550 PGHE~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~--erv~~eL~e~gl~~e~ 627 (1018)
|.+..|..++..++..+|++++|+|+.+....+..+. .....+.|+|+|+||+|+..... ................
T Consensus 19 ~~~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l--~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 19 PDEDFILNLLSSISPKKALVVHVVDIFDFPGSLIPRL--RLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred ChHHHHHHHHHhcccCCcEEEEEEECccCCCccchhH--HHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcC
Confidence 4444578899999999999999999987544433333 22235789999999999953221 2222221000000000
Q ss_pred CCCCCcEEEEecCCCCChHHHHHHHHHHH
Q 001745 628 WGGDIPMVQISALKGEKVDDLLETIMLVA 656 (1018)
Q Consensus 628 ~g~~vpiVeISAktGeGIdeLleaIl~la 656 (1018)
+ ...+++++||++|.|+++|++.|....
T Consensus 97 ~-~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 97 L-KPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred C-CcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 0 113589999999999999999987543
No 329
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=4.2e-06 Score=97.57 Aligned_cols=107 Identities=24% Similarity=0.422 Sum_probs=84.1
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcC--cccccc-cCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhcc
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKT--KVAAAE-AGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARV 565 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~--~v~~~e-~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ 565 (1018)
+.|++|++||++|.|||||+..|... +....+ .+.|| + +.++.++|+|+.||. ++. .+...++.
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiT-------v---vsgK~RRiTflEcp~--Dl~-~miDvaKI 133 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPIT-------V---VSGKTRRITFLECPS--DLH-QMIDVAKI 133 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceE-------E---eecceeEEEEEeChH--HHH-HHHhHHHh
Confidence 45677889999999999999988632 222222 23333 1 246778999999993 333 34567789
Q ss_pred CCEEEEEEecCCCCChhHHHHHHHHHHcCCC-EEEEEecCCCCC
Q 001745 566 TDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDG 608 (1018)
Q Consensus 566 ADiVILVVDAddGv~~QT~E~I~~ak~~gIP-IIVVINKiDL~~ 608 (1018)
||+++|++|+.-|+.-.|.|.++.+...+.| ++-|++..|+..
T Consensus 134 aDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk 177 (1077)
T COG5192 134 ADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFK 177 (1077)
T ss_pred hheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeeccccc
Confidence 9999999999999999999999999999999 888999999954
No 330
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.35 E-value=2.8e-06 Score=94.13 Aligned_cols=131 Identities=18% Similarity=0.294 Sum_probs=82.0
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccc--------cCCceeeeeeEEEEEecCCceecEEEEeCCCcc----------
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAE--------AGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHE---------- 553 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e--------~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE---------- 553 (1018)
++|.++|..|.|||||+|.|......... ....|..+......+.-++....++|+||||..
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~ 84 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCWE 84 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhhH
Confidence 57999999999999999999876544332 111233455555555556677889999999932
Q ss_pred --------chHHHHHh-------hh--ccCCEEEEEEecC-CCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCC-----
Q 001745 554 --------AFGAMRAR-------GA--RVTDIAVIVVAAD-DGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN----- 610 (1018)
Q Consensus 554 --------~F~~~r~r-------g~--~~ADiVILVVDAd-dGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~----- 610 (1018)
.|...... .. ...|+++++++.+ .++.+.+++.++.+.. .+++|-|+.|.|.....
T Consensus 85 ~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~-~vNvIPvIaKaD~lt~~el~~~ 163 (281)
T PF00735_consen 85 PIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSK-RVNVIPVIAKADTLTPEELQAF 163 (281)
T ss_dssp HHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTT-TSEEEEEESTGGGS-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhcc-cccEEeEEecccccCHHHHHHH
Confidence 11111110 11 3468999999986 5888999988888764 58899999999985421
Q ss_pred hHHHHHHHHhcCC
Q 001745 611 PERVMQELSSIGL 623 (1018)
Q Consensus 611 ~erv~~eL~e~gl 623 (1018)
...+...+..+++
T Consensus 164 k~~i~~~l~~~~I 176 (281)
T PF00735_consen 164 KQRIREDLEENNI 176 (281)
T ss_dssp HHHHHHHHHHTT-
T ss_pred HHHHHHHHHHcCc
Confidence 2334555655554
No 331
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.31 E-value=1.3e-06 Score=96.45 Aligned_cols=84 Identities=25% Similarity=0.222 Sum_probs=61.3
Q ss_pred EEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCC-------------ceecEEEEeCCCcc-------
Q 001745 494 LTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDG-------------KLQPCVFLDTPGHE------- 553 (1018)
Q Consensus 494 VaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dg-------------k~~~ItfIDTPGHE------- 553 (1018)
|+|+|.||+|||||+|+|++.+......+++|++.....+.+.-.. ....+.|+||||-.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 5899999999999999999988877788899987665555442100 01259999999932
Q ss_pred chHHHHHhhhccCCEEEEEEecCC
Q 001745 554 AFGAMRARGARVTDIAVIVVAADD 577 (1018)
Q Consensus 554 ~F~~~r~rg~~~ADiVILVVDAdd 577 (1018)
.+.......++.+|++++|||+.+
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCcC
Confidence 222233345688999999999853
No 332
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=9.4e-06 Score=92.37 Aligned_cols=87 Identities=25% Similarity=0.241 Sum_probs=66.5
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEec----------C----CceecEEEEeCCCc----
Q 001745 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPV----------D----GKLQPCVFLDTPGH---- 552 (1018)
Q Consensus 491 ~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~----------d----gk~~~ItfIDTPGH---- 552 (1018)
.+.++|+|.||+|||||+|+++........++.+|++.....+.++. . .....+.|+|.+|-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 36799999999999999999999887778889999877655554421 0 01245899999992
Q ss_pred ---cchHHHHHhhhccCCEEEEEEecCC
Q 001745 553 ---EAFGAMRARGARVTDIAVIVVAADD 577 (1018)
Q Consensus 553 ---E~F~~~r~rg~~~ADiVILVVDAdd 577 (1018)
+-........++.+|+++.||++.+
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 3455555667789999999999974
No 333
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.30 E-value=1.8e-06 Score=93.67 Aligned_cols=94 Identities=18% Similarity=0.158 Sum_probs=65.5
Q ss_pred cchHHHHHhhhccCCEEEEEEecCCCC-ChhH-HHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHhcCCCCCCCCC
Q 001745 553 EAFGAMRARGARVTDIAVIVVAADDGI-RPQT-NEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGG 630 (1018)
Q Consensus 553 E~F~~~r~rg~~~ADiVILVVDAddGv-~~QT-~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~e~~g~ 630 (1018)
++|..++..++..+|.+++|+|+.+.. .... ..++..+...++|+++|+||+||..... ...+....+. .+
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~~~-~~~~~~~~~~----~~-- 96 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDDED-MEKEQLDIYR----NI-- 96 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCCHH-HHHHHHHHHH----HC--
Confidence 667777777899999999999998743 3333 3344455567899999999999953221 1111121111 11
Q ss_pred CCcEEEEecCCCCChHHHHHHHH
Q 001745 631 DIPMVQISALKGEKVDDLLETIM 653 (1018)
Q Consensus 631 ~vpiVeISAktGeGIdeLleaIl 653 (1018)
.++++++||++|.||++|++.|.
T Consensus 97 g~~v~~~SAktg~gi~eLf~~l~ 119 (245)
T TIGR00157 97 GYQVLMTSSKNQDGLKELIEALQ 119 (245)
T ss_pred CCeEEEEecCCchhHHHHHhhhc
Confidence 36799999999999999998774
No 334
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.28 E-value=1.4e-05 Score=96.46 Aligned_cols=113 Identities=15% Similarity=0.154 Sum_probs=69.1
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCccc-ccc-cCCceeeeeeEEEEEecCCceecEEEEeCCCccch------HHH---
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAE-AGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAF------GAM--- 558 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v~-~~e-~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F------~~~--- 558 (1018)
-..+|++||.+|+|||||+|.|.+.... ... .+++|. ...+. ...+ +..+.||||||.... ...
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr-~~ei~--~~id--G~~L~VIDTPGL~dt~~dq~~neeILk 191 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTS-VQEIE--GLVQ--GVKIRVIDTPGLKSSASDQSKNEKILS 191 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceE-EEEEE--EEEC--CceEEEEECCCCCccccchHHHHHHHH
Confidence 4468999999999999999999987543 332 234454 22222 1223 357999999995432 111
Q ss_pred -HHhhhc--cCCEEEEEEecCCCCC-hhHHHHHHHHHH-cC----CCEEEEEecCCCC
Q 001745 559 -RARGAR--VTDIAVIVVAADDGIR-PQTNEAIAHAKA-AG----VPIVIAINKIDKD 607 (1018)
Q Consensus 559 -r~rg~~--~ADiVILVVDAddGv~-~QT~E~I~~ak~-~g----IPIIVVINKiDL~ 607 (1018)
..+++. ..|++|||+..+.... .+....++.+.. ++ .-+||+.|..|..
T Consensus 192 ~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~l 249 (763)
T TIGR00993 192 SVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASA 249 (763)
T ss_pred HHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccC
Confidence 222333 4799999987753222 233334444332 22 2489999999985
No 335
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.25 E-value=1.3e-06 Score=93.41 Aligned_cols=148 Identities=14% Similarity=0.092 Sum_probs=93.7
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCccc-ccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHH-----hhhc
Q 001745 491 PPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRA-----RGAR 564 (1018)
Q Consensus 491 ~pkVaImGhvdvGKTTLLnrL~~~~v~-~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~-----rg~~ 564 (1018)
..+|.+||..|+|||||=..+..+..+ .....|-|+|+...++.+ - ++..+++||+.|++.|..... ..++
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~Rf--l-Gnl~LnlwDcGgqe~fmen~~~~q~d~iF~ 80 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRF--L-GNLVLNLWDCGGQEEFMENYLSSQEDNIFR 80 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhh--h-hhheeehhccCCcHHHHHHHHhhcchhhhe
Confidence 468999999999999987666543322 234456787776666543 2 345799999999997765433 4568
Q ss_pred cCCEEEEEEecCCCCChhHHHHHHHHHH---cCCC---EEEEEecCCCCCCChHHHHHHHHhcCCCCCCCCCCCcEEEEe
Q 001745 565 VTDIAVIVVAADDGIRPQTNEAIAHAKA---AGVP---IVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQIS 638 (1018)
Q Consensus 565 ~ADiVILVVDAddGv~~QT~E~I~~ak~---~gIP---IIVVINKiDL~~a~~erv~~eL~e~gl~~e~~g~~vpiVeIS 638 (1018)
..++.|+|+|+...-+..+..+.+.+.. .+-| +++.+.|+|+...+..+..-+.....+..-.-...+.++++|
T Consensus 81 nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Ts 160 (295)
T KOG3886|consen 81 NVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTS 160 (295)
T ss_pred eheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccc
Confidence 8999999999987655555444433221 2333 899999999965554433322221111000001236788888
Q ss_pred cCC
Q 001745 639 ALK 641 (1018)
Q Consensus 639 Akt 641 (1018)
-+.
T Consensus 161 iwD 163 (295)
T KOG3886|consen 161 IWD 163 (295)
T ss_pred hhh
Confidence 765
No 336
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.24 E-value=9.5e-06 Score=82.68 Aligned_cols=97 Identities=19% Similarity=0.196 Sum_probs=66.2
Q ss_pred CCCcc-chHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHhcCCCCCC
Q 001745 549 TPGHE-AFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPED 627 (1018)
Q Consensus 549 TPGHE-~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~e~ 627 (1018)
.|||- +........+..+|++++|+|+.++......+.+..+ .+.|+|+++||+|+.. .+.....+..+..
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~ilVlNK~Dl~~--~~~~~~~~~~~~~---- 73 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIVLNKADLAD--PKKTKKWLKYFES---- 73 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEEEEEehhhcCC--hHHHHHHHHHHHh----
Confidence 57874 3445556778999999999999886655554444433 3689999999999953 2222111111110
Q ss_pred CCCCCcEEEEecCCCCChHHHHHHHHHH
Q 001745 628 WGGDIPMVQISALKGEKVDDLLETIMLV 655 (1018)
Q Consensus 628 ~g~~vpiVeISAktGeGIdeLleaIl~l 655 (1018)
....++.+||+++.|+++|++.|...
T Consensus 74 --~~~~vi~iSa~~~~gi~~L~~~l~~~ 99 (171)
T cd01856 74 --KGEKVLFVNAKSGKGVKKLLKAAKKL 99 (171)
T ss_pred --cCCeEEEEECCCcccHHHHHHHHHHH
Confidence 01458999999999999999998754
No 337
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.23 E-value=9.9e-06 Score=69.81 Aligned_cols=79 Identities=38% Similarity=0.465 Sum_probs=68.9
Q ss_pred EEEEEEeec-CCceEEEEEEeeeeEeeCCcEEEeeCCEEEEEEEEeeeecccccccccccCceeEEEEccCCCCCCCCEE
Q 001745 910 AEVRAIFSS-GSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDLEEGDII 988 (1018)
Q Consensus 910 A~V~~vF~~-~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~i~SLk~~k~dV~ev~~G~EcGi~i~~f~d~~~GD~i 988 (1018)
+.|-.+|.. +.+.++.|+|.+|.++.|..+++.+.+. .+..+|.+|.+++.++.++.+|..|++.+.++.+++.||.+
T Consensus 3 ~~v~~~~~~~~~g~v~~~rv~~G~l~~g~~v~~~~~~~-~~~~~i~~i~~~~~~~~~~~aG~~~~~~~~~~~~~~~g~~l 81 (83)
T cd01342 3 ALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGG-GVKGKVKSLKRFKGEVDEAVAGDIVGIVLKDKDDIKIGDTL 81 (83)
T ss_pred eEEEEEEEeCCceEEEEEEEeeCEEecCCEEEEecCCc-eeEEEEeEeEecCceeceecCCCEEEEEEccccccCCCCEe
Confidence 456677764 5789999999999999999999998532 36789999999999999999999999999988899999987
Q ss_pred E
Q 001745 989 E 989 (1018)
Q Consensus 989 e 989 (1018)
.
T Consensus 82 ~ 82 (83)
T cd01342 82 T 82 (83)
T ss_pred c
Confidence 4
No 338
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.13 E-value=1.4e-05 Score=80.17 Aligned_cols=88 Identities=11% Similarity=0.082 Sum_probs=62.0
Q ss_pred hhhccCCEEEEEEecCCCCChhHHHHHHHHHH--cCCCEEEEEecCCCCCCChHHHHHHHHhcCCCCCCCCCCCcEEEEe
Q 001745 561 RGARVTDIAVIVVAADDGIRPQTNEAIAHAKA--AGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQIS 638 (1018)
Q Consensus 561 rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~--~gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~e~~g~~vpiVeIS 638 (1018)
+.+..+|++++|+|+.++...+.......+.. .++|+|+|+||+|+.. .+.+...+..+.- .+ ...++++|
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~--~~~~~~~~~~~~~---~~--~~~~~~iS 76 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVP--TWVTARWVKILSK---EY--PTIAFHAS 76 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCC--HHHHHHHHHHHhc---CC--cEEEEEee
Confidence 45688999999999998766666666666554 3489999999999953 3333333333221 11 12268899
Q ss_pred cCCCCChHHHHHHHHHH
Q 001745 639 ALKGEKVDDLLETIMLV 655 (1018)
Q Consensus 639 AktGeGIdeLleaIl~l 655 (1018)
|+++.|+++|++.|...
T Consensus 77 a~~~~~~~~L~~~l~~~ 93 (157)
T cd01858 77 INNPFGKGSLIQLLRQF 93 (157)
T ss_pred ccccccHHHHHHHHHHH
Confidence 99999999999998654
No 339
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=98.10 E-value=1.3e-05 Score=74.35 Aligned_cols=78 Identities=22% Similarity=0.359 Sum_probs=69.3
Q ss_pred EEEEEEeec-CCceEEEEEEeeeeEeeCCcEEEeeCCEEEEEEEEeeeecccccccccccCceeEEEEccC--CCCCCCC
Q 001745 910 AEVRAIFSS-GSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADY--DDLEEGD 986 (1018)
Q Consensus 910 A~V~~vF~~-~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~i~SLk~~k~dV~ev~~G~EcGi~i~~f--~d~~~GD 986 (1018)
.-|..+|+. +.|.++..+|..|.|+.|..++++..+ ...+|.||..+.++++++.+|+.|+|.|.+. ++++.||
T Consensus 7 ~~V~~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~~---~~~~V~sI~~~~~~~~~a~aG~~v~i~l~~i~~~~v~~G~ 83 (91)
T cd03693 7 LPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAG---VTGEVKSVEMHHEPLEEALPGDNVGFNVKNVSKKDIKRGD 83 (91)
T ss_pred EEEEEEEEeCCceEEEEEEEecceeecCCEEEECCCC---cEEEEEEEEECCcCcCEECCCCEEEEEECCCCHHHcCCcC
Confidence 456789984 568888889999999999999999987 4799999999999999999999999999984 6899999
Q ss_pred EEEE
Q 001745 987 IIEA 990 (1018)
Q Consensus 987 ~ie~ 990 (1018)
+|-.
T Consensus 84 vl~~ 87 (91)
T cd03693 84 VAGD 87 (91)
T ss_pred EEcc
Confidence 8853
No 340
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.08 E-value=1.1e-05 Score=80.91 Aligned_cols=82 Identities=18% Similarity=0.236 Sum_probs=57.2
Q ss_pred CEEEEEEecCCCCChhHHHHH-HHHHHcCCCEEEEEecCCCCCCChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCCh
Q 001745 567 DIAVIVVAADDGIRPQTNEAI-AHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKV 645 (1018)
Q Consensus 567 DiVILVVDAddGv~~QT~E~I-~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGeGI 645 (1018)
|++++|+|+.++...+..... ..+...++|+|+|+||+|+.. .+.+...+..+. ..+ ...++++||++|.|+
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~--~~~~~~~~~~~~---~~~--~~~ii~vSa~~~~gi 73 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVP--KEVLRKWLAYLR---HSY--PTIPFKISATNGQGI 73 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCC--HHHHHHHHHHHH---hhC--CceEEEEeccCCcCh
Confidence 789999999886655544444 455667899999999999953 232222221111 001 256899999999999
Q ss_pred HHHHHHHHHH
Q 001745 646 DDLLETIMLV 655 (1018)
Q Consensus 646 deLleaIl~l 655 (1018)
++|++.|...
T Consensus 74 ~~L~~~i~~~ 83 (155)
T cd01849 74 EKKESAFTKQ 83 (155)
T ss_pred hhHHHHHHHH
Confidence 9999998754
No 341
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.07 E-value=1.5e-05 Score=87.78 Aligned_cols=97 Identities=18% Similarity=0.227 Sum_probs=67.2
Q ss_pred CCCcc-chHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCC-hHHHHHHHHhcCCCCC
Q 001745 549 TPGHE-AFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPE 626 (1018)
Q Consensus 549 TPGHE-~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~-~erv~~eL~e~gl~~e 626 (1018)
.|||- +........+..+|++|+|+|+.++...........+ .+.|+|+|+||+|+.... .......+...
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l--~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~----- 76 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKPRLIVLNKADLADPAVTKQWLKYFEEK----- 76 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH--CCCCEEEEEEccccCCHHHHHHHHHHHHHc-----
Confidence 38874 3344556778999999999999886665554444444 378999999999995321 11122222221
Q ss_pred CCCCCCcEEEEecCCCCChHHHHHHHHHHH
Q 001745 627 DWGGDIPMVQISALKGEKVDDLLETIMLVA 656 (1018)
Q Consensus 627 ~~g~~vpiVeISAktGeGIdeLleaIl~la 656 (1018)
..+++.+||+++.|+++|++.|....
T Consensus 77 ----~~~vi~iSa~~~~gi~~L~~~i~~~~ 102 (276)
T TIGR03596 77 ----GIKALAINAKKGKGVKKIIKAAKKLL 102 (276)
T ss_pred ----CCeEEEEECCCcccHHHHHHHHHHHH
Confidence 14689999999999999999987654
No 342
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=3.6e-05 Score=86.99 Aligned_cols=117 Identities=22% Similarity=0.338 Sum_probs=85.2
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccccC-CceeeeeeEEEEE-------------------ecCC----------
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAG-GITQGIGAYKVQV-------------------PVDG---------- 539 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~g-GiTqdIga~~V~i-------------------~~dg---------- 539 (1018)
..|-|.+||.-..||||++++|+...+.....+ ..|.+ .+.+.+ ++.+
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd--~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afln 134 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTD--RFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLN 134 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcc--eeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHH
Confidence 457899999999999999999998766422211 11111 111110 0000
Q ss_pred ----------ceecEEEEeCCCc-----------cchHHHHHhhhccCCEEEEEEecCC-CCChhHHHHHHHHHHcCCCE
Q 001745 540 ----------KLQPCVFLDTPGH-----------EAFGAMRARGARVTDIAVIVVAADD-GIRPQTNEAIAHAKAAGVPI 597 (1018)
Q Consensus 540 ----------k~~~ItfIDTPGH-----------E~F~~~r~rg~~~ADiVILVVDAdd-Gv~~QT~E~I~~ak~~gIPI 597 (1018)
---.++|+||||. -.|.....-.+..+|.+||++|+.. .+.+++.++|..++...-.+
T Consensus 135 Rf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~Edki 214 (532)
T KOG1954|consen 135 RFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDKI 214 (532)
T ss_pred HHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCccee
Confidence 0024899999992 3577777888899999999999976 67899999999999888889
Q ss_pred EEEEecCCCCC
Q 001745 598 VIAINKIDKDG 608 (1018)
Q Consensus 598 IVVINKiDL~~ 608 (1018)
-||+||.|..+
T Consensus 215 RVVLNKADqVd 225 (532)
T KOG1954|consen 215 RVVLNKADQVD 225 (532)
T ss_pred EEEeccccccC
Confidence 99999999853
No 343
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.04 E-value=7.4e-06 Score=82.11 Aligned_cols=55 Identities=22% Similarity=0.359 Sum_probs=42.6
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcc-cccccCCceeeeeeEEEEEecCCceecEEEEeCCC
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG 551 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v-~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPG 551 (1018)
....|+++|.+|+|||||+|+|.+... ..+..+|+|++...+.. . ..+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~----~---~~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITL----M---KRIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEc----C---CCEEEEECcC
Confidence 456789999999999999999997554 56777888987544331 1 2489999999
No 344
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.02 E-value=8.3e-06 Score=84.20 Aligned_cols=56 Identities=20% Similarity=0.530 Sum_probs=44.9
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCcc-cccccCCceeeeeeEEEEEecCCceecEEEEeCCC
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG 551 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~~v-~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPG 551 (1018)
..+..|+++|.+|+|||||+|+|.+... ..+..+|+|++...+.+ + ..+.++||||
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~----~---~~~~l~DtPG 171 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL----D---KKVKLLDSPG 171 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe----C---CCEEEEECcC
Confidence 4567899999999999999999997654 56778899987654432 2 2589999999
No 345
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=98.01 E-value=4.9e-06 Score=78.04 Aligned_cols=112 Identities=14% Similarity=0.120 Sum_probs=68.4
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCC-ceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGG-ITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAV 570 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gG-iTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVI 570 (1018)
.+|+++|+.++|||+|+.++....+. +.+. .|.+ |........+.++.++
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~--~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~ 51 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFD--YVPTVFTIG---------------------------IDVYDPTSYESFDVVL 51 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCcc--ccCceehhh---------------------------hhhccccccCCCCEEE
Confidence 37999999999999999999655443 1111 1111 3344455667889999
Q ss_pred EEEecCCCCChh--HHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCChH
Q 001745 571 IVVAADDGIRPQ--TNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVD 646 (1018)
Q Consensus 571 LVVDAddGv~~Q--T~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGeGId 646 (1018)
+|++.+...... +...+......++|+++++||.|+.... .+.... ..+++++||++|.|+.
T Consensus 52 ~v~~~~~~~s~~~~~~~~i~~~~k~dl~~~~~~nk~dl~~~~--~~~~~~------------~~~~~~~s~~~~~~~~ 115 (124)
T smart00010 52 QCWRVDDRDSADNKNVPEVLVGNKSDLPILVGGNRDVLEEER--QVATEE------------GLEFAETSAKTPEEGE 115 (124)
T ss_pred EEEEccCHHHHHHHhHHHHHhcCCCCCcEEEEeechhhHhhC--cCCHHH------------HHHHHHHhCCCcchhh
Confidence 989887632211 2222222223457789999999983211 111110 1235678999999984
No 346
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.00 E-value=4.1e-05 Score=82.97 Aligned_cols=85 Identities=25% Similarity=0.213 Sum_probs=57.5
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccch-------HHHHHh
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAF-------GAMRAR 561 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F-------~~~r~r 561 (1018)
.--.+|+++|-|.+||||||..++.+......+..+|..--... +.+ ++-.|+++|.||.-.- ......
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGv--i~y--~ga~IQllDLPGIieGAsqgkGRGRQvia 135 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGV--IHY--NGANIQLLDLPGIIEGASQGKGRGRQVIA 135 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecce--EEe--cCceEEEecCcccccccccCCCCCceEEE
Confidence 34468999999999999999999987665555555553321111 223 3456999999994211 111223
Q ss_pred hhccCCEEEEEEecCC
Q 001745 562 GARVTDIAVIVVAADD 577 (1018)
Q Consensus 562 g~~~ADiVILVVDAdd 577 (1018)
.++.||++++|+|++.
T Consensus 136 vArtaDlilMvLDatk 151 (364)
T KOG1486|consen 136 VARTADLILMVLDATK 151 (364)
T ss_pred EeecccEEEEEecCCc
Confidence 3578999999999985
No 347
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.00 E-value=0.00011 Score=83.08 Aligned_cols=147 Identities=22% Similarity=0.245 Sum_probs=81.8
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcC------cccc--cccC---C--------ceeeeeeEEEEEe-------------
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKT------KVAA--AEAG---G--------ITQGIGAYKVQVP------------- 536 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~------~v~~--~e~g---G--------iTqdIga~~V~i~------------- 536 (1018)
.++.+|+++|.+|+||||++..|... ++.. .+.. . .-.++.+......
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~ 191 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA 191 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence 35678999999999999999887421 1111 0000 0 0011222111100
Q ss_pred cCCceecEEEEeCCCccchHHH----HH---hh-----hccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecC
Q 001745 537 VDGKLQPCVFLDTPGHEAFGAM----RA---RG-----ARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKI 604 (1018)
Q Consensus 537 ~dgk~~~ItfIDTPGHE~F~~~----r~---rg-----~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKi 604 (1018)
....++.+.|+||||...+... .. +. ....+..+||+|++.+. .....+......--+.-+++||+
T Consensus 192 ~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~a~~f~~~~~~~giIlTKl 269 (318)
T PRK10416 192 AKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQAKAFHEAVGLTGIILTKL 269 (318)
T ss_pred HHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHHHHHHHhhCCCCEEEEECC
Confidence 0124467999999995432211 11 11 13467899999998542 22222222221112357889999
Q ss_pred CCCCCChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCChHHHH
Q 001745 605 DKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLL 649 (1018)
Q Consensus 605 DL~~a~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGeGIdeLl 649 (1018)
|-. ...-.+...+...+ .|+..++ +|+++++|.
T Consensus 270 D~t-~~~G~~l~~~~~~~---------~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 270 DGT-AKGGVVFAIADELG---------IPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred CCC-CCccHHHHHHHHHC---------CCEEEEe--CCCChhhCc
Confidence 953 34445555555543 6788887 899997764
No 348
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.93 E-value=8e-05 Score=84.61 Aligned_cols=133 Identities=21% Similarity=0.291 Sum_probs=90.6
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCccccc-----ccC---CceeeeeeEEEEEecCCceecEEEEeCCCccc------
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAA-----EAG---GITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA------ 554 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~~v~~~-----e~g---GiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~------ 554 (1018)
.-+++|.++|..|.|||||+|.|+....... ..+ ..|..+..+...+.-++....++++||||.-+
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 3567899999999999999999987643322 111 24556667777776677778899999999211
Q ss_pred ------------hHHHHH------hh--h--ccCCEEEEEEecC-CCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCC-
Q 001745 555 ------------FGAMRA------RG--A--RVTDIAVIVVAAD-DGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN- 610 (1018)
Q Consensus 555 ------------F~~~r~------rg--~--~~ADiVILVVDAd-dGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~- 610 (1018)
|..... |. + ...|+|++.+-.+ +++.+.+++.++.+.. .+.+|=||-|.|....+
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~-~vNlIPVI~KaD~lT~~E 179 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSK-RVNLIPVIAKADTLTDDE 179 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhc-ccCeeeeeeccccCCHHH
Confidence 111110 11 1 2367899998765 6899999999887763 57799999999985422
Q ss_pred ----hHHHHHHHHhcC
Q 001745 611 ----PERVMQELSSIG 622 (1018)
Q Consensus 611 ----~erv~~eL~e~g 622 (1018)
.+.+++.+..+.
T Consensus 180 l~~~K~~I~~~i~~~n 195 (373)
T COG5019 180 LAEFKERIREDLEQYN 195 (373)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 234555565554
No 349
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.90 E-value=3.7e-05 Score=85.23 Aligned_cols=99 Identities=18% Similarity=0.220 Sum_probs=68.1
Q ss_pred eCCCccc-hHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCC-hHHHHHHHHhcCCCC
Q 001745 548 DTPGHEA-FGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMP 625 (1018)
Q Consensus 548 DTPGHE~-F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~-~erv~~eL~e~gl~~ 625 (1018)
-.|||-. -.......+..+|++|+|+|+.++...+..+....+. +.|+|+|+||+|+.... .......+.+.
T Consensus 6 wfpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~~~~~~~~~~~~~~~~---- 79 (287)
T PRK09563 6 WFPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLADPEVTKKWIEYFEEQ---- 79 (287)
T ss_pred CcHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcCCHHHHHHHHHHHHHc----
Confidence 3588743 2334556779999999999998876655554444443 78999999999995321 11122222221
Q ss_pred CCCCCCCcEEEEecCCCCChHHHHHHHHHHHH
Q 001745 626 EDWGGDIPMVQISALKGEKVDDLLETIMLVAE 657 (1018)
Q Consensus 626 e~~g~~vpiVeISAktGeGIdeLleaIl~lae 657 (1018)
..+++.+||+++.|+++|++.|..+..
T Consensus 80 -----~~~vi~vSa~~~~gi~~L~~~l~~~l~ 106 (287)
T PRK09563 80 -----GIKALAINAKKGQGVKKILKAAKKLLK 106 (287)
T ss_pred -----CCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 146899999999999999999876543
No 350
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=97.90 E-value=4.7e-05 Score=69.24 Aligned_cols=77 Identities=23% Similarity=0.409 Sum_probs=66.5
Q ss_pred EEEEEeec-CCceEEEEEEeeeeEeeCCcEEEeeCCEEEEEEEEeeeecccccccccccCceeEEEEccC--CCCCCCCE
Q 001745 911 EVRAIFSS-GSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADY--DDLEEGDI 987 (1018)
Q Consensus 911 ~V~~vF~~-~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~i~SLk~~k~dV~ev~~G~EcGi~i~~f--~d~~~GD~ 987 (1018)
-|..+|+. +.|.++.-+|..|.++.|..+.++-.+ ..++|.||+.+.++++++.+|+.++|.|.+. ++++.||+
T Consensus 4 ~i~~~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~~---~~~~V~sI~~~~~~~~~a~aGd~v~i~l~~~~~~~i~~G~v 80 (83)
T cd03696 4 PIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLG---EETRVRSIQVHGKDVEEAKAGDRVALNLTGVDAKDLERGDV 80 (83)
T ss_pred EEEEEEEcCCcEEEEEEEEeecEEeCCCEEEECCCC---ceEEEEEEEECCcCcCEEcCCCEEEEEEcCCCHHHcCCccE
Confidence 35678874 457777779999999999999988766 4799999999999999999999999999986 58999998
Q ss_pred EEE
Q 001745 988 IEA 990 (1018)
Q Consensus 988 ie~ 990 (1018)
+-|
T Consensus 81 l~~ 83 (83)
T cd03696 81 LSS 83 (83)
T ss_pred EcC
Confidence 753
No 351
>PRK12289 GTPase RsgA; Reviewed
Probab=97.90 E-value=4.3e-05 Score=87.41 Aligned_cols=85 Identities=24% Similarity=0.335 Sum_probs=59.0
Q ss_pred hhhccCCEEEEEEecCCCC-Chh-HHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHhcCCCCCCCCCCCcEEEEe
Q 001745 561 RGARVTDIAVIVVAADDGI-RPQ-TNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQIS 638 (1018)
Q Consensus 561 rg~~~ADiVILVVDAddGv-~~Q-T~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~e~~g~~vpiVeIS 638 (1018)
..+.++|.+++|+|+.+.. .++ ....+..+...++|+|+|+||+||.. .+........+ ..| .++++++|
T Consensus 85 ~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~--~~~~~~~~~~~----~~~--g~~v~~iS 156 (352)
T PRK12289 85 PPVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVS--PTEQQQWQDRL----QQW--GYQPLFIS 156 (352)
T ss_pred hhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCC--hHHHHHHHHHH----Hhc--CCeEEEEE
Confidence 3478899999999998643 342 24445555667999999999999953 22222211111 112 25689999
Q ss_pred cCCCCChHHHHHHHH
Q 001745 639 ALKGEKVDDLLETIM 653 (1018)
Q Consensus 639 AktGeGIdeLleaIl 653 (1018)
|++|.|+++|++.|.
T Consensus 157 A~tg~GI~eL~~~L~ 171 (352)
T PRK12289 157 VETGIGLEALLEQLR 171 (352)
T ss_pred cCCCCCHHHHhhhhc
Confidence 999999999998874
No 352
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.89 E-value=2e-05 Score=81.30 Aligned_cols=55 Identities=22% Similarity=0.353 Sum_probs=41.9
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCc---------ccccccCCceeeeeeEEEEEecCCceecEEEEeCCC
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTK---------VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG 551 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~---------v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPG 551 (1018)
+...++++|.+|+|||||+|+|.... ...+..+|+|++...+.+ +. .+.|+||||
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~----~~---~~~~~DtPG 189 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPL----GN---GKKLYDTPG 189 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEec----CC---CCEEEeCcC
Confidence 55789999999999999999998643 244566788988543332 22 479999999
No 353
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.88 E-value=3.9e-05 Score=75.82 Aligned_cols=77 Identities=22% Similarity=0.162 Sum_probs=54.8
Q ss_pred HHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHc--CCCEEEEEecCCCCCCCh-HHHHHHHHhcCCCCCCCCCCCcEE
Q 001745 559 RARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAA--GVPIVIAINKIDKDGANP-ERVMQELSSIGLMPEDWGGDIPMV 635 (1018)
Q Consensus 559 r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~--gIPIIVVINKiDL~~a~~-erv~~eL~e~gl~~e~~g~~vpiV 635 (1018)
..+.+..+|++++|+|+.++...+..+....+... ++|+|+++||+|+..... ......+...+ .+++
T Consensus 5 ~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~---------~~ii 75 (141)
T cd01857 5 LWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEG---------IVVV 75 (141)
T ss_pred HHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHHhcC---------CeEE
Confidence 34667899999999999988777766777776665 899999999999953111 11222222221 4689
Q ss_pred EEecCCCCC
Q 001745 636 QISALKGEK 644 (1018)
Q Consensus 636 eISAktGeG 644 (1018)
++||+++.+
T Consensus 76 ~iSa~~~~~ 84 (141)
T cd01857 76 FFSALKENA 84 (141)
T ss_pred EEEecCCCc
Confidence 999999875
No 354
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.88 E-value=0.00026 Score=78.33 Aligned_cols=95 Identities=23% Similarity=0.268 Sum_probs=57.8
Q ss_pred ceecEEEEeCCCccchHHHHH-------hhh-----ccCCEEEEEEecCCCCChhHHHHHHHHH-HcCCCEEEEEecCCC
Q 001745 540 KLQPCVFLDTPGHEAFGAMRA-------RGA-----RVTDIAVIVVAADDGIRPQTNEAIAHAK-AAGVPIVIAINKIDK 606 (1018)
Q Consensus 540 k~~~ItfIDTPGHE~F~~~r~-------rg~-----~~ADiVILVVDAddGv~~QT~E~I~~ak-~~gIPIIVVINKiDL 606 (1018)
.++.+.|+||||......... +.. ...|.++||+|+.. .......+.... ..+ +.-+++||+|-
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~--~~~~~~~~~~f~~~~~-~~g~IlTKlDe 229 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT--GQNALEQAKVFNEAVG-LTGIILTKLDG 229 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC--CHHHHHHHHHHHhhCC-CCEEEEEccCC
Confidence 346899999999654332221 111 24899999999974 333333333322 233 36778899997
Q ss_pred CCCChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCChHHHH
Q 001745 607 DGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLL 649 (1018)
Q Consensus 607 ~~a~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGeGIdeLl 649 (1018)
.. ..-.+.......+ .|+.+++ +|+++++|.
T Consensus 230 ~~-~~G~~l~~~~~~~---------~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 230 TA-KGGIILSIAYELK---------LPIKFIG--VGEKIDDLA 260 (272)
T ss_pred CC-CccHHHHHHHHHC---------cCEEEEe--CCCChHhCc
Confidence 32 3334444444433 5788877 889987764
No 355
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.87 E-value=6.5e-05 Score=86.02 Aligned_cols=95 Identities=24% Similarity=0.295 Sum_probs=68.2
Q ss_pred ccchHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCC--ChHHHHHHH----HhcCCCC
Q 001745 552 HEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGA--NPERVMQEL----SSIGLMP 625 (1018)
Q Consensus 552 HE~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a--~~erv~~eL----~e~gl~~ 625 (1018)
.+.|..+.......+|++++|+|+.+....+..+..+++ .+.|+++|+||+|+... ..+++...+ .++++.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~--~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~- 126 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV--GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLK- 126 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh--CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCC-
Confidence 568888888888999999999999886555444444443 27899999999998532 233443332 233321
Q ss_pred CCCCCCCcEEEEecCCCCChHHHHHHHHH
Q 001745 626 EDWGGDIPMVQISALKGEKVDDLLETIML 654 (1018)
Q Consensus 626 e~~g~~vpiVeISAktGeGIdeLleaIl~ 654 (1018)
...++++||++|.|+++|++.|..
T Consensus 127 -----~~~i~~vSAk~g~gv~eL~~~l~~ 150 (360)
T TIGR03597 127 -----PVDIILVSAKKGNGIDELLDKIKK 150 (360)
T ss_pred -----cCcEEEecCCCCCCHHHHHHHHHH
Confidence 124899999999999999998853
No 356
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=97.84 E-value=0.00016 Score=80.75 Aligned_cols=156 Identities=15% Similarity=0.236 Sum_probs=90.9
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEe--cCCceecEEEEeCCCccchHHHHHhhhc--
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVP--VDGKLQPCVFLDTPGHEAFGAMRARGAR-- 564 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~--~dgk~~~ItfIDTPGHE~F~~~r~rg~~-- 564 (1018)
+..-+|.++|..++|||||+.+|.+..- ...| .++++..+.+. ......++.+|=.-|.-....+....+.
T Consensus 50 psgk~VlvlGdn~sGKtsLi~klqg~e~---~Kkg--sgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~at 124 (473)
T KOG3905|consen 50 PSGKNVLVLGDNGSGKTSLISKLQGSET---VKKG--SGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPAT 124 (473)
T ss_pred CCCCeEEEEccCCCchhHHHHHhhcccc---cCCC--CCcceEEEecccccchhhhhcceEEecCchhhhhHHhhccccc
Confidence 4566899999999999999999987541 1122 23333333332 2222334566655564433334333332
Q ss_pred -cC-CEEEEEEecCCCCC--hhH-------HHHHHH--------------------------------------------
Q 001745 565 -VT-DIAVIVVAADDGIR--PQT-------NEAIAH-------------------------------------------- 589 (1018)
Q Consensus 565 -~A-DiVILVVDAddGv~--~QT-------~E~I~~-------------------------------------------- 589 (1018)
.+ -++||++|.+..+. .+. .|++..
T Consensus 125 s~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~ 204 (473)
T KOG3905|consen 125 SLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSA 204 (473)
T ss_pred CccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcc
Confidence 33 36788888886421 110 111110
Q ss_pred -------------HHHcCCCEEEEEecCCCCC----------CChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCChH
Q 001745 590 -------------AKAAGVPIVIAINKIDKDG----------ANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVD 646 (1018)
Q Consensus 590 -------------ak~~gIPIIVVINKiDL~~----------a~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGeGId 646 (1018)
....++|++||++|||... ...+-+...+...-+.. ....|.+|+|...||+
T Consensus 205 de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~-----GaaLiyTSvKE~KNid 279 (473)
T KOG3905|consen 205 DEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRY-----GAALIYTSVKETKNID 279 (473)
T ss_pred ccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHc-----CceeEEeecccccchH
Confidence 0114679999999999832 11223334444433221 2568999999999999
Q ss_pred HHHHHHHH
Q 001745 647 DLLETIML 654 (1018)
Q Consensus 647 eLleaIl~ 654 (1018)
-|..+|..
T Consensus 280 llyKYivh 287 (473)
T KOG3905|consen 280 LLYKYIVH 287 (473)
T ss_pred HHHHHHHH
Confidence 99999874
No 357
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.83 E-value=2.8e-05 Score=76.87 Aligned_cols=53 Identities=19% Similarity=0.331 Sum_probs=41.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcc-cccccCCceeeeeeEEEEEecCCceecEEEEeCCCc
Q 001745 493 VLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH 552 (1018)
Q Consensus 493 kVaImGhvdvGKTTLLnrL~~~~v-~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGH 552 (1018)
+++++|.+|+|||||+|+|.+... ......|.|++...+. ++. .+.||||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIF----LTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEE----eCC---CEEEEECCCc
Confidence 799999999999999999997664 4556677887754322 222 5899999995
No 358
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.00011 Score=88.31 Aligned_cols=153 Identities=22% Similarity=0.327 Sum_probs=92.5
Q ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCcee----------------------e-----------------
Q 001745 487 LEDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQ----------------------G----------------- 527 (1018)
Q Consensus 487 l~~r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTq----------------------d----------------- 527 (1018)
+.++..+|+|.|..+.||||++|+++..++..+..+.+|- .
T Consensus 105 l~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~ 184 (749)
T KOG0448|consen 105 LARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDK 184 (749)
T ss_pred HhhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccc
Confidence 4567789999999999999999999876655443332221 0
Q ss_pred -eeeEE-EEEecCCc-----eecEEEEeCCCc---cchHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCC-
Q 001745 528 -IGAYK-VQVPVDGK-----LQPCVFLDTPGH---EAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP- 596 (1018)
Q Consensus 528 -Iga~~-V~i~~dgk-----~~~ItfIDTPGH---E~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIP- 596 (1018)
.+.+. +.+.+... .-.+.++|.||- ..+..-.......+|++|||+.+....+..-.+.+...... .|
T Consensus 185 ~~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~-Kpn 263 (749)
T KOG0448|consen 185 DLGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEE-KPN 263 (749)
T ss_pred ccCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhcc-CCc
Confidence 11111 00111111 014889999994 34555555666889999999999876655555555555444 56
Q ss_pred EEEEEecCCCCCCCh---HHHHHHHHhcCCCCCCCCCCCcEEEEecCC
Q 001745 597 IVIAINKIDKDGANP---ERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (1018)
Q Consensus 597 IIVVINKiDL~~a~~---erv~~eL~e~gl~~e~~g~~vpiVeISAkt 641 (1018)
|+|+.||+|.....+ +.+..++.+++...+.- -.-.++.+||+.
T Consensus 264 iFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~e-A~DrvfFVS~~e 310 (749)
T KOG0448|consen 264 IFILNNKWDASASEPECKEDVLKQIHELSVVTEKE-AADRVFFVSAKE 310 (749)
T ss_pred EEEEechhhhhcccHHHHHHHHHHHHhcCcccHhh-hcCeeEEEeccc
Confidence 888899999854322 33444444333221110 112478888774
No 359
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.82 E-value=3.5e-05 Score=77.19 Aligned_cols=57 Identities=21% Similarity=0.388 Sum_probs=44.2
Q ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHcCc-ccccccCCceeeeeeEEEEEecCCceecEEEEeCCC
Q 001745 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTK-VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG 551 (1018)
Q Consensus 488 ~~r~pkVaImGhvdvGKTTLLnrL~~~~-v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPG 551 (1018)
..+...++++|.+|+|||||+|+|.+.. ...+..+++|++.....+ + ..+.++||||
T Consensus 97 ~~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~----~---~~~~liDtPG 154 (155)
T cd01849 97 LKKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL----D---NKIKLLDTPG 154 (155)
T ss_pred cccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe----c---CCEEEEECCC
Confidence 3467889999999999999999999765 345666788887644322 2 3599999999
No 360
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.80 E-value=8.9e-05 Score=79.53 Aligned_cols=86 Identities=22% Similarity=0.313 Sum_probs=59.9
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcC--ccccc-ccCCceeeeeeEEEEEecCCceecEEEEeCCCccch------HHHHHh
Q 001745 491 PPVLTIMGHVDHGKTTLLDHIRKT--KVAAA-EAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAF------GAMRAR 561 (1018)
Q Consensus 491 ~pkVaImGhvdvGKTTLLnrL~~~--~v~~~-e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F------~~~r~r 561 (1018)
-.+|+|+|.+++|||||+|+|.+. .+... ....+|++|-.+...... +.+..+.|+||||.... ..+...
T Consensus 7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~~~~~~~~~~~~~ 85 (224)
T cd01851 7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGRERGEFEDDARLF 85 (224)
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-CCcceEEEEecCCcCccccCchhhhhHHH
Confidence 347999999999999999999987 66543 335678887766655432 34567999999994321 222233
Q ss_pred hhc--cCCEEEEEEecCC
Q 001745 562 GAR--VTDIAVIVVAADD 577 (1018)
Q Consensus 562 g~~--~ADiVILVVDAdd 577 (1018)
.+. .+|++|+.++...
T Consensus 86 ~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 86 ALATLLSSVLIYNSWETI 103 (224)
T ss_pred HHHHHHhCEEEEeccCcc
Confidence 333 4898888887653
No 361
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.80 E-value=3.6e-05 Score=85.32 Aligned_cols=58 Identities=28% Similarity=0.413 Sum_probs=46.0
Q ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHcCcc-cccccCCceeeeeeEEEEEecCCceecEEEEeCCCc
Q 001745 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH 552 (1018)
Q Consensus 488 ~~r~pkVaImGhvdvGKTTLLnrL~~~~v-~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGH 552 (1018)
..+..+++++|.+|+|||||+|+|++.+. ..+..+|+|++.....+ + ..+.++||||.
T Consensus 118 ~~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~----~---~~~~l~DtPGi 176 (287)
T PRK09563 118 RPRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKL----G---KGLELLDTPGI 176 (287)
T ss_pred CcCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEe----C---CcEEEEECCCc
Confidence 34667899999999999999999998664 56778899998653332 2 25899999995
No 362
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=0.00016 Score=82.66 Aligned_cols=132 Identities=20% Similarity=0.292 Sum_probs=90.5
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCccccc-------ccCCceeeeeeEEEEEecCCceecEEEEeCCCccc---------
Q 001745 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAA-------EAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA--------- 554 (1018)
Q Consensus 491 ~pkVaImGhvdvGKTTLLnrL~~~~v~~~-------e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~--------- 554 (1018)
.+.+.++|..|.|||||+|.|....+... ....-|..+..+.+.+.-+|-..+++++||||.-+
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 36899999999999999999876533211 11222556777777777677788999999999211
Q ss_pred ---------hHHHHH-------hhh--ccCCEEEEEEecC-CCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCC-----
Q 001745 555 ---------FGAMRA-------RGA--RVTDIAVIVVAAD-DGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN----- 610 (1018)
Q Consensus 555 ---------F~~~r~-------rg~--~~ADiVILVVDAd-dGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~----- 610 (1018)
|..... ..+ ...+++++.+.-. +|+.+.+.+.++.+.. .+.+|=|+-|.|.....
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~-~vNiIPVI~KaD~lT~~El~~~ 179 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSK-KVNLIPVIAKADTLTKDELNQF 179 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhc-cccccceeeccccCCHHHHHHH
Confidence 111100 112 2578999999865 5799999998887753 68899999999985432
Q ss_pred hHHHHHHHHhcCC
Q 001745 611 PERVMQELSSIGL 623 (1018)
Q Consensus 611 ~erv~~eL~e~gl 623 (1018)
..++++.+..+.+
T Consensus 180 K~~I~~~i~~~nI 192 (366)
T KOG2655|consen 180 KKRIRQDIEEHNI 192 (366)
T ss_pred HHHHHHHHHHcCc
Confidence 2344555655544
No 363
>PRK00098 GTPase RsgA; Reviewed
Probab=97.77 E-value=6.3e-05 Score=83.94 Aligned_cols=83 Identities=28% Similarity=0.323 Sum_probs=56.9
Q ss_pred hccCCEEEEEEecCCCCC-hhH-HHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHhcCCCCCCCCCCCcEEEEecC
Q 001745 563 ARVTDIAVIVVAADDGIR-PQT-NEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (1018)
Q Consensus 563 ~~~ADiVILVVDAddGv~-~QT-~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~e~~g~~vpiVeISAk 640 (1018)
+..+|++++|+|+.+... ... ...+..+...++|+++|+||+|+.. +.+........+ ..+ .++++++||+
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~-~~~~~~~~~~~~----~~~--g~~v~~vSA~ 150 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLD-DLEEARELLALY----RAI--GYDVLELSAK 150 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCC-CHHHHHHHHHHH----HHC--CCeEEEEeCC
Confidence 588999999999976432 222 3444556677999999999999952 222222221111 111 2579999999
Q ss_pred CCCChHHHHHHH
Q 001745 641 KGEKVDDLLETI 652 (1018)
Q Consensus 641 tGeGIdeLleaI 652 (1018)
+|.|+++|++.|
T Consensus 151 ~g~gi~~L~~~l 162 (298)
T PRK00098 151 EGEGLDELKPLL 162 (298)
T ss_pred CCccHHHHHhhc
Confidence 999999999876
No 364
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.77 E-value=5.1e-05 Score=77.37 Aligned_cols=58 Identities=33% Similarity=0.480 Sum_probs=44.3
Q ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHcCcc-cccccCCceeeeeeEEEEEecCCceecEEEEeCCCc
Q 001745 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH 552 (1018)
Q Consensus 488 ~~r~pkVaImGhvdvGKTTLLnrL~~~~v-~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGH 552 (1018)
..+.++++++|.+|+|||||+++|....+ ......++|.+...+.+ + ..+.+|||||.
T Consensus 112 ~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~----~---~~~~~iDtpG~ 170 (171)
T cd01856 112 LPRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKI----S---PGIYLLDTPGI 170 (171)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEe----c---CCEEEEECCCC
Confidence 44567899999999999999999998665 34556678877544332 2 35899999994
No 365
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.76 E-value=8.9e-05 Score=82.34 Aligned_cols=84 Identities=30% Similarity=0.336 Sum_probs=58.4
Q ss_pred hhccCCEEEEEEecCCCC-ChhHH-HHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHhcCCCCCCCCCCCcEEEEec
Q 001745 562 GARVTDIAVIVVAADDGI-RPQTN-EAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISA 639 (1018)
Q Consensus 562 g~~~ADiVILVVDAddGv-~~QT~-E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~e~~g~~vpiVeISA 639 (1018)
.+..+|.+++|+|+.+.. ..... .++..+...++|+++|+||+|+.... ......... ..+ .++++++||
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~--~~~~~~~~~----~~~--g~~v~~vSA 146 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDDE--EEELELVEA----LAL--GYPVLAVSA 146 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCChH--HHHHHHHHH----HhC--CCeEEEEEC
Confidence 468899999999998865 43333 34455666799999999999995431 111111111 011 268999999
Q ss_pred CCCCChHHHHHHHH
Q 001745 640 LKGEKVDDLLETIM 653 (1018)
Q Consensus 640 ktGeGIdeLleaIl 653 (1018)
++|.|+++|+..|.
T Consensus 147 ~~g~gi~~L~~~L~ 160 (287)
T cd01854 147 KTGEGLDELREYLK 160 (287)
T ss_pred CCCccHHHHHhhhc
Confidence 99999999998763
No 366
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=97.74 E-value=0.00024 Score=76.90 Aligned_cols=131 Identities=22% Similarity=0.303 Sum_probs=84.4
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCccccc-------ccCCceeeeeeEEEEEecCCceecEEEEeCCCc------------
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAA-------EAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH------------ 552 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~-------e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGH------------ 552 (1018)
++|.++|..|.|||||+|.|...++... +.-..|..+......+..++-..+++++||||.
T Consensus 47 FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWeP 126 (336)
T KOG1547|consen 47 FNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWEP 126 (336)
T ss_pred eEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhHH
Confidence 5899999999999999999976544321 111234444444444444566678999999992
Q ss_pred ---------cchH-----HHHHhhh--ccCCEEEEEEecC-CCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCC-----
Q 001745 553 ---------EAFG-----AMRARGA--RVTDIAVIVVAAD-DGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN----- 610 (1018)
Q Consensus 553 ---------E~F~-----~~r~rg~--~~ADiVILVVDAd-dGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~----- 610 (1018)
+.|. ..|.+.+ ...+++++.+..+ +.+.+-+++.++.+.. -+.+|-|+-|.|...-.
T Consensus 127 I~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~-vvNvvPVIakaDtlTleEr~~F 205 (336)
T KOG1547|consen 127 IEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTE-VVNVVPVIAKADTLTLEERSAF 205 (336)
T ss_pred HHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhh-hheeeeeEeecccccHHHHHHH
Confidence 1121 1122333 2357888888776 4678888998887764 35578889999974321
Q ss_pred hHHHHHHHHhcCC
Q 001745 611 PERVMQELSSIGL 623 (1018)
Q Consensus 611 ~erv~~eL~e~gl 623 (1018)
.+++.+++..+++
T Consensus 206 kqrI~~el~~~~i 218 (336)
T KOG1547|consen 206 KQRIRKELEKHGI 218 (336)
T ss_pred HHHHHHHHHhcCc
Confidence 2445556666654
No 367
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=97.72 E-value=1.3e-05 Score=91.36 Aligned_cols=115 Identities=30% Similarity=0.399 Sum_probs=84.1
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHc-------Ccc---------------------cccccCCceeeeeeEEEEEecCCce
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRK-------TKV---------------------AAAEAGGITQGIGAYKVQVPVDGKL 541 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~-------~~v---------------------~~~e~gGiTqdIga~~V~i~~dgk~ 541 (1018)
-.++++++||+++||||+....+. ..+ ......++|+++.... +....
T Consensus 6 ~~~ni~~i~h~~s~~stt~~~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~~----~~t~k 81 (391)
T KOG0052|consen 6 IHINIVVIGHVDSGKSTTTGYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWK----FETSK 81 (391)
T ss_pred cccceEEEEeeeeeeeEEEeeecccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEEEeec----cccee
Confidence 346799999999999998653210 000 0111223443332222 23456
Q ss_pred ecEEEEeCCCccchHHHHHhhhccCCEEEEEEecCC-------CCChhHHHHHHHHHHcCCC-EEEEEecCCCCC
Q 001745 542 QPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADD-------GIRPQTNEAIAHAKAAGVP-IVIAINKIDKDG 608 (1018)
Q Consensus 542 ~~ItfIDTPGHE~F~~~r~rg~~~ADiVILVVDAdd-------Gv~~QT~E~I~~ak~~gIP-IIVVINKiDL~~ 608 (1018)
+.++++|.|||..|...+..+..++|++++++.+.- ....|+.++...+..+++. +|+.+||+|...
T Consensus 82 ~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~~ 156 (391)
T KOG0052|consen 82 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTE 156 (391)
T ss_pred EEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEeecccccC
Confidence 789999999999999999999999999999999843 3478999999999888765 899999999743
No 368
>PF04760 IF2_N: Translation initiation factor IF-2, N-terminal region; InterPro: IPR006847 This region is found in the N-terminal half of translation initiation factor IF-2. It is found in two copies in IF-2 alpha isoforms, and in only one copy in the N-terminally truncated beta and gamma isoforms []. Its function is unknown.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1ND9_A.
Probab=97.71 E-value=9.8e-06 Score=68.38 Aligned_cols=51 Identities=25% Similarity=0.489 Sum_probs=40.7
Q ss_pred CCccHHHHHHHhCCCHHHHHHHHHh-CCCc-ccccccCCHHHHHHHHHhcCCc
Q 001745 410 KGMLIEELARNLAIGEGEILGSLYS-KGIK-PEGVQTLDKDMVKMICKDYEVE 460 (1018)
Q Consensus 410 ~~itv~eLa~~l~~~~~~iik~L~~-~G~~-~~in~~Ld~e~~~lla~E~g~~ 460 (1018)
++++|.|||..|+++..+|++.|+. +|++ .+.++.||.+.+++|+++|+++
T Consensus 2 ~~i~V~elAk~l~v~~~~ii~~l~~~~Gi~~~~~~~~ld~e~~~~i~~~~~~k 54 (54)
T PF04760_consen 2 EKIRVSELAKELGVPSKEIIKKLFKELGIMVKSINSSLDEEEAELIAEEFGVK 54 (54)
T ss_dssp -EE-TTHHHHHHSSSHHHHHHHH-HHHTS---SSSS-EETTGGGHHHHHH---
T ss_pred CceEHHHHHHHHCcCHHHHHHHHHHhCCcCcCCCCCcCCHHHHHHHHHHhCcC
Confidence 4789999999999999999999977 9999 8899999999999999999874
No 369
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=97.71 E-value=0.00015 Score=66.60 Aligned_cols=78 Identities=24% Similarity=0.230 Sum_probs=63.8
Q ss_pred CCCcceEEEEeeecCCCcEEEEEeEeeEEecCCEEEEc-cceeEEEEEeccCC---CcccccCCCccEEEeccCCCCCCC
Q 001745 667 RNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCG-EAFGKVRALFDDSG---NRVDEAGPSIPVQIIGLNGVPIAG 742 (1018)
Q Consensus 667 r~~~g~ViEs~~dkg~G~VatglV~~GtLkvGD~Vv~G-~~~gKVRaI~~~~g---~~V~eA~pg~~V~V~Gl~~vP~aG 742 (1018)
.++.+.|+.+..++..|.++.++|.+|+|+.||.|..- ....+|..|+..+| ..+++|.+|+.+.+.|++++ ..|
T Consensus 2 ~p~~~~Vfkv~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~~-~~G 80 (85)
T cd03690 2 SELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVNREEKIKITELRVFNNGEVVTADTVTAGDIAILTGLKGL-RVG 80 (85)
T ss_pred CCcEEEEEEeEECCCCCeEEEEEEccCEEcCCCEEEeCCCcEEEeceeEEEeCCCeEECcEECCCCEEEEECCCCC-cCc
Confidence 46778999999999999999999999999999999653 22345666665544 46899999999999999887 688
Q ss_pred CeE
Q 001745 743 DEF 745 (1018)
Q Consensus 743 d~~ 745 (1018)
|.+
T Consensus 81 dtl 83 (85)
T cd03690 81 DVL 83 (85)
T ss_pred ccc
Confidence 865
No 370
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=97.70 E-value=0.00013 Score=67.24 Aligned_cols=62 Identities=15% Similarity=0.162 Sum_probs=54.4
Q ss_pred cceEEEEeeecCCCcEEEEEeEeeEEecCCEEEEccc------eeEEEEEeccCCCcccccCCCccEEE
Q 001745 670 KGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEA------FGKVRALFDDSGNRVDEAGPSIPVQI 732 (1018)
Q Consensus 670 ~g~ViEs~~dkg~G~VatglV~~GtLkvGD~Vv~G~~------~gKVRaI~~~~g~~V~eA~pg~~V~V 732 (1018)
...|.+++..++.|++++|+|.+|++++||.+.+++. ..+|++|+.+ ++.+++|.||+.|.+
T Consensus 2 ~~~I~~vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~g~~~~~~V~sI~~~-~~~~~~a~aGd~v~l 69 (87)
T cd03694 2 EFQIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGSFRPVTVKSIHRN-RSPVRVVRAGQSASL 69 (87)
T ss_pred EEEEEeEEEcCCcceEEEEEEecCEEeCCCEEEECCCCCCCEeEEEEEEEEEC-CeECCEECCCCEEEE
Confidence 3466777777899999999999999999999999775 5699999877 789999999999976
No 371
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.70 E-value=5.9e-05 Score=83.15 Aligned_cols=57 Identities=32% Similarity=0.486 Sum_probs=44.7
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCc-ccccccCCceeeeeeEEEEEecCCceecEEEEeCCCc
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKTK-VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH 552 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~~-v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGH 552 (1018)
.+..+++++|.+|+|||||+|+|.+.. ...+..+|+|++...+.+ + ..+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~----~---~~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKL----S---DGLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEe----C---CCEEEEECCCc
Confidence 456789999999999999999999765 446677889987643332 2 25899999995
No 372
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=97.68 E-value=0.00034 Score=63.79 Aligned_cols=77 Identities=21% Similarity=0.277 Sum_probs=67.6
Q ss_pred EEEEEEeecCCceEEEEEEeeeeEeeCCcEEEeeCCEEEEEEEEeeeecccccccccccCceeEEEEccCC--CCCCCCE
Q 001745 910 AEVRAIFSSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYD--DLEEGDI 987 (1018)
Q Consensus 910 A~V~~vF~~~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~i~SLk~~k~dV~ev~~G~EcGi~i~~f~--d~~~GD~ 987 (1018)
.-|..+|+.+.|.+..-+|..|.++.|..+.++-.+. ..+|.||..+++.++++.+|..|+|.|.+.+ +++.||+
T Consensus 4 ~~V~~v~~~~~g~vv~G~v~~G~i~~Gd~v~i~P~~~---~~~V~si~~~~~~~~~a~aGd~v~~~l~~~~~~~v~~G~v 80 (83)
T cd03698 4 LPISDKYKDQGGTVVSGKVESGSIQKGDTLLVMPSKE---SVEVKSIYVDDEEVDYAVAGENVRLKLKGIDEEDISPGDV 80 (83)
T ss_pred EEEEeEEEcCCCcEEEEEEeeeEEeCCCEEEEeCCCc---EEEEEEEEECCeECCEECCCCEEEEEECCCCHHHCCCCCE
Confidence 3466888755788888899999999999999998874 5799999999999999999999999999865 8999999
Q ss_pred EE
Q 001745 988 IE 989 (1018)
Q Consensus 988 ie 989 (1018)
|-
T Consensus 81 l~ 82 (83)
T cd03698 81 LC 82 (83)
T ss_pred Ee
Confidence 73
No 373
>PRK12736 elongation factor Tu; Reviewed
Probab=97.67 E-value=0.002 Score=74.72 Aligned_cols=181 Identities=16% Similarity=0.224 Sum_probs=124.3
Q ss_pred CCCccHHHHHHHHHhCCCCCeEEEEEEcccC--CCCHhhHHHHHhcCC--EEEEec-CCCC--hhHH--------hHHHh
Q 001745 808 DVQGSIEAVRQALQVLPQDNVTLKFLLQATG--DISASDVDLAVASKA--IILGFN-VKAP--GSVK--------TYADN 872 (1018)
Q Consensus 808 Dv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG--~ItesDV~lA~as~a--iIi~Fn-V~~~--~~a~--------~~A~~ 872 (1018)
|+-|-.+-+.+.+..+..-++-+-|+.+.-| +-|+.-+.++...+- +|++.| +... .+.. ++.++
T Consensus 81 DtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~ 160 (394)
T PRK12736 81 DCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSE 160 (394)
T ss_pred ECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHH
Confidence 9999877778888877777788888877654 445555666665553 567777 2321 1221 11122
Q ss_pred cC-----ceEEEechH---------hHHHHHHHHHHhcccc-cceeeeeeEeEEEEEEee-cCCceEEEEEEeeeeEeeC
Q 001745 873 KG-----VEIRLYRVI---------YDLIDDMRNAMEGLLE-TVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKG 936 (1018)
Q Consensus 873 ~~-----V~I~~~~II---------Y~Liddik~~~~~~l~-~~~~e~~~G~A~V~~vF~-~~~g~IaGc~V~~G~i~~~ 936 (1018)
.+ +.|+.-+-. |+-++.+.+++...++ |.....---..-|-.+|. .+.|.|+.-+|.+|.|+.|
T Consensus 161 ~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~r~~I~~~~~~~g~G~Vv~G~v~~G~l~~g 240 (394)
T PRK12736 161 YDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPTPERDTDKPFLMPVEDVFTITGRGTVVTGRVERGTVKVG 240 (394)
T ss_pred hCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCCCCCCCCCCeEEEEEEEEecCCcEEEEEEEEeecEEecC
Confidence 23 455544433 3446677777776665 322221123456778998 4679999999999999999
Q ss_pred CcEEEeeCCEEEEEEEEeeeecccccccccccCceeEEEEccC--CCCCCCCEEE
Q 001745 937 CGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADY--DDLEEGDIIE 989 (1018)
Q Consensus 937 ~~vrviR~g~vi~~G~i~SLk~~k~dV~ev~~G~EcGi~i~~f--~d~~~GD~ie 989 (1018)
..+.++-.+. -...+|.||+.+.++|.++.+|+-|||.+.+. ++++.||+|-
T Consensus 241 d~v~i~p~~~-~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~~G~vl~ 294 (394)
T PRK12736 241 DEVEIVGIKE-TQKTVVTGVEMFRKLLDEGQAGDNVGVLLRGVDRDEVERGQVLA 294 (394)
T ss_pred CEEEEecCCC-CeEEEEEEEEECCEEccEECCCCEEEEEECCCcHHhCCcceEEe
Confidence 9998875321 13579999999999999999999999999986 4899999984
No 374
>PLN03126 Elongation factor Tu; Provisional
Probab=97.66 E-value=0.0016 Score=77.61 Aligned_cols=187 Identities=16% Similarity=0.175 Sum_probs=126.0
Q ss_pred eeeEEEEcCCCccHHHHHHHHHhCCCCCeEEEEEEcc--cCCCCHhhHHHHHhcCC--EEEEec-CC-CCh---------
Q 001745 800 QLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQA--TGDISASDVDLAVASKA--IILGFN-VK-APG--------- 864 (1018)
Q Consensus 800 ~l~vIiKaDv~GSlEAi~~~L~~l~~~~v~i~ii~~~--VG~ItesDV~lA~as~a--iIi~Fn-V~-~~~--------- 864 (1018)
.+++| |+-|-.+-+.+.+..+..-++-+-|+.+. +.+-|+.=+.+|...+- +|+.+| +. ++.
T Consensus 145 ~i~li---DtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~ 221 (478)
T PLN03126 145 HYAHV---DCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVEL 221 (478)
T ss_pred EEEEE---ECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHH
Confidence 45544 89998777788888777778888888765 44555566666666553 567777 22 221
Q ss_pred hHHhHHHhc-----CceEEEec-------------------hHhHHHHHHHHHHhcccc-cceeeeeeEeEEEEEEeec-
Q 001745 865 SVKTYADNK-----GVEIRLYR-------------------VIYDLIDDMRNAMEGLLE-TVEEQVPIGSAEVRAIFSS- 918 (1018)
Q Consensus 865 ~a~~~A~~~-----~V~I~~~~-------------------IIY~Liddik~~~~~~l~-~~~~e~~~G~A~V~~vF~~- 918 (1018)
+++++.++. .+.+..-+ --|+-++.+.+++..+.+ |.....---+.-|..+|+.
T Consensus 222 ~i~~~l~~~g~~~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~~~p~r~~~~p~r~~I~~vf~v~ 301 (478)
T PLN03126 222 EVRELLSSYEFPGDDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYIPIPQRQTDLPFLLAVEDVFSIT 301 (478)
T ss_pred HHHHHHHhcCCCcCcceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhCCCCCCccccceeeEEEEEEEeC
Confidence 122222222 34443221 114434455555555432 3222222234667799984
Q ss_pred CCceEEEEEEeeeeEeeCCcEEEeeCCEEEEEEEEeeeecccccccccccCceeEEEEccC--CCCCCCCEEEE
Q 001745 919 GSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADY--DDLEEGDIIEA 990 (1018)
Q Consensus 919 ~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~i~SLk~~k~dV~ev~~G~EcGi~i~~f--~d~~~GD~ie~ 990 (1018)
+.|.|+.-+|..|.|+.|..+.+.-.|. -...+|.||+.++++++++.+|+-|||.|.+. .|++.||+|-.
T Consensus 302 g~GtVv~G~V~sG~i~~Gd~v~i~p~~~-~~~~~VksI~~~~~~v~~A~aG~~v~l~L~~i~~~di~rG~VL~~ 374 (478)
T PLN03126 302 GRGTVATGRVERGTVKVGETVDIVGLRE-TRSTTVTGVEMFQKILDEALAGDNVGLLLRGIQKADIQRGMVLAK 374 (478)
T ss_pred CceEEEEEEEEcCeEecCCEEEEecCCC-ceEEEEEEEEECCeECCEEeCCceeeeeccCCcHHHcCCccEEec
Confidence 5799999999999999999999986553 14578999999999999999999999999975 47999999854
No 375
>PRK14974 cell division protein FtsY; Provisional
Probab=97.63 E-value=0.00068 Score=77.31 Aligned_cols=94 Identities=22% Similarity=0.270 Sum_probs=56.1
Q ss_pred eecEEEEeCCCccchHHH----HHhh--hccCCEEEEEEecCCCCChhHHHHHHHHHH-cCCCEEEEEecCCCCCCChHH
Q 001745 541 LQPCVFLDTPGHEAFGAM----RARG--ARVTDIAVIVVAADDGIRPQTNEAIAHAKA-AGVPIVIAINKIDKDGANPER 613 (1018)
Q Consensus 541 ~~~ItfIDTPGHE~F~~~----r~rg--~~~ADiVILVVDAddGv~~QT~E~I~~ak~-~gIPIIVVINKiDL~~a~~er 613 (1018)
++.+.||||+|....... .... ....|.++||+|+..+ ....+.+..... .++ --+++||+|.. ...-.
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g--~d~~~~a~~f~~~~~~-~giIlTKlD~~-~~~G~ 297 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAG--NDAVEQAREFNEAVGI-DGVILTKVDAD-AKGGA 297 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccc--hhHHHHHHHHHhcCCC-CEEEEeeecCC-CCccH
Confidence 456999999995432211 1111 2357899999999753 233333333322 233 56778999984 23334
Q ss_pred HHHHHHhcCCCCCCCCCCCcEEEEecCCCCChHHHH
Q 001745 614 VMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLL 649 (1018)
Q Consensus 614 v~~eL~e~gl~~e~~g~~vpiVeISAktGeGIdeLl 649 (1018)
+....... ..|+.+++ +|+++++|.
T Consensus 298 ~ls~~~~~---------~~Pi~~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 298 ALSIAYVI---------GKPILFLG--VGQGYDDLI 322 (336)
T ss_pred HHHHHHHH---------CcCEEEEe--CCCChhhcc
Confidence 44444333 36788887 899998765
No 376
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.63 E-value=0.00064 Score=79.71 Aligned_cols=146 Identities=20% Similarity=0.207 Sum_probs=78.7
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHH------cCcccc--ccc-C----------CceeeeeeEEEEEecC------------
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIR------KTKVAA--AEA-G----------GITQGIGAYKVQVPVD------------ 538 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~------~~~v~~--~e~-g----------GiTqdIga~~V~i~~d------------ 538 (1018)
++.+|+++|.+|+||||++..|. +.++.. .+. + +.-.++.++......+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 45689999999999999999875 112211 100 0 0001222222111001
Q ss_pred -CceecEEEEeCCCccchHHH----HHhh--hccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCCh
Q 001745 539 -GKLQPCVFLDTPGHEAFGAM----RARG--ARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANP 611 (1018)
Q Consensus 539 -gk~~~ItfIDTPGHE~F~~~----r~rg--~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~ 611 (1018)
...+.+.|+||||....... .... ....|-++||+|+.-|-. ....+......--+--+++||+|-. ...
T Consensus 179 ~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~--a~~~a~~F~~~~~~~g~IlTKlD~~-arg 255 (429)
T TIGR01425 179 KKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQA--AEAQAKAFKDSVDVGSVIITKLDGH-AKG 255 (429)
T ss_pred HhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChh--HHHHHHHHHhccCCcEEEEECccCC-CCc
Confidence 12578999999995433221 1111 235688999999875422 2333333333223467889999973 233
Q ss_pred HHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCChHHHH
Q 001745 612 ERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLL 649 (1018)
Q Consensus 612 erv~~eL~e~gl~~e~~g~~vpiVeISAktGeGIdeLl 649 (1018)
-.+.......+ .|+.++ -+|+++++|.
T Consensus 256 G~aLs~~~~t~---------~PI~fi--g~Ge~v~Dle 282 (429)
T TIGR01425 256 GGALSAVAATK---------SPIIFI--GTGEHIDDFE 282 (429)
T ss_pred cHHhhhHHHHC---------CCeEEE--cCCCChhhcC
Confidence 33343333333 455554 3577776653
No 377
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.61 E-value=0.00057 Score=81.02 Aligned_cols=155 Identities=18% Similarity=0.193 Sum_probs=91.4
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecC--CceecEEEEeCCCccchHHHHHhhhcc---
Q 001745 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVD--GKLQPCVFLDTPGHEAFGAMRARGARV--- 565 (1018)
Q Consensus 491 ~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~d--gk~~~ItfIDTPGHE~F~~~r~rg~~~--- 565 (1018)
...|.|+|..++|||||+.+|.+.. ....+..++|......-+ ....++.+|-..|...|..+....+..
T Consensus 25 ~k~vlvlG~~~~GKttli~~L~~~e-----~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l 99 (472)
T PF05783_consen 25 EKSVLVLGDKGSGKTTLIARLQGIE-----DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENL 99 (472)
T ss_pred CceEEEEeCCCCchHHHHHHhhccC-----CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccc
Confidence 4579999999999999999987532 122244455444433211 122356777776655566555444422
Q ss_pred C-CEEEEEEecCCCC--ChhH-------HHHH------------------HHHH--------------------------
Q 001745 566 T-DIAVIVVAADDGI--RPQT-------NEAI------------------AHAK-------------------------- 591 (1018)
Q Consensus 566 A-DiVILVVDAddGv--~~QT-------~E~I------------------~~ak-------------------------- 591 (1018)
. -++|||+|.+... +.+. .+++ .+++
T Consensus 100 ~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~ 179 (472)
T PF05783_consen 100 PNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDD 179 (472)
T ss_pred cceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccc
Confidence 2 3678888988632 1000 0000 0010
Q ss_pred --------------HcCCCEEEEEecCCCCC-------CC---hHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCChHH
Q 001745 592 --------------AAGVPIVIAINKIDKDG-------AN---PERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDD 647 (1018)
Q Consensus 592 --------------~~gIPIIVVINKiDL~~-------a~---~erv~~eL~e~gl~~e~~g~~vpiVeISAktGeGIde 647 (1018)
..++|++||++|+|... +. .+-+.+.|+...+.. ...+|.+|++...|++-
T Consensus 180 ~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~y-----GAsL~yts~~~~~n~~~ 254 (472)
T PF05783_consen 180 ESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKY-----GASLIYTSVKEEKNLDL 254 (472)
T ss_pred ccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhc-----CCeEEEeeccccccHHH
Confidence 02479999999999732 11 123344444433321 25688899999999999
Q ss_pred HHHHHHHH
Q 001745 648 LLETIMLV 655 (1018)
Q Consensus 648 LleaIl~l 655 (1018)
|+.+|...
T Consensus 255 L~~yi~h~ 262 (472)
T PF05783_consen 255 LYKYILHR 262 (472)
T ss_pred HHHHHHHH
Confidence 99887643
No 378
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=97.61 E-value=0.00028 Score=65.57 Aligned_cols=65 Identities=22% Similarity=0.213 Sum_probs=58.0
Q ss_pred CCCcceEEEEeeecCCCcEEEEEeEeeEEecCCEEEEcc--ceeEEEEEeccCCCcccccCCCccEEE
Q 001745 667 RNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE--AFGKVRALFDDSGNRVDEAGPSIPVQI 732 (1018)
Q Consensus 667 r~~~g~ViEs~~dkg~G~VatglV~~GtLkvGD~Vv~G~--~~gKVRaI~~~~g~~V~eA~pg~~V~V 732 (1018)
.++...|.+++..++.|++++|.|.+|+|++||.+.+.+ ...+|++|+.+ ++.+++|.||+.|.+
T Consensus 3 ~p~r~~V~~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~~~~~~V~sI~~~-~~~~~~a~aG~~v~i 69 (91)
T cd03693 3 KPLRLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGVTGEVKSVEMH-HEPLEEALPGDNVGF 69 (91)
T ss_pred CCeEEEEEEEEEeCCceEEEEEEEecceeecCCEEEECCCCcEEEEEEEEEC-CcCcCEECCCCEEEE
Confidence 466778888888889999999999999999999999976 47899999887 678999999999975
No 379
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.60 E-value=7.9e-05 Score=84.21 Aligned_cols=57 Identities=32% Similarity=0.468 Sum_probs=45.2
Q ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHcCcc-cccccCCceeeeeeEEEEEecCCceecEEEEeCCC
Q 001745 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG 551 (1018)
Q Consensus 488 ~~r~pkVaImGhvdvGKTTLLnrL~~~~v-~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPG 551 (1018)
..+...+.|+|-||+|||||+|+|.+.+. ..+..+|+|.+.....+. . .+.++||||
T Consensus 129 ~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~----~---~i~LlDtPG 186 (322)
T COG1161 129 LKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLD----D---GIYLLDTPG 186 (322)
T ss_pred CccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcC----C---CeEEecCCC
Confidence 34557899999999999999999997665 567788999886544432 2 389999999
No 380
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.60 E-value=0.00015 Score=79.13 Aligned_cols=82 Identities=24% Similarity=0.180 Sum_probs=54.6
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccc-------hHHHHHhhhc
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA-------FGAMRARGAR 564 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~-------F~~~r~rg~~ 564 (1018)
.+|.++|-|.+|||||+..|.+....+....++|.- +++-....+..++.+.|.||.-. -.......++
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~----~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavar 135 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLT----TVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVAR 135 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEE----EecceEeccccceeeecCcchhcccccCCCCccEEEEEee
Confidence 379999999999999999998765544444444421 22222223456799999999421 1122223457
Q ss_pred cCCEEEEEEecCC
Q 001745 565 VTDIAVIVVAADD 577 (1018)
Q Consensus 565 ~ADiVILVVDAdd 577 (1018)
.|.++++|+|+..
T Consensus 136 tcnli~~vld~~k 148 (358)
T KOG1487|consen 136 TCNLIFIVLDVLK 148 (358)
T ss_pred cccEEEEEeeccC
Confidence 7899999999875
No 381
>PRK12288 GTPase RsgA; Reviewed
Probab=97.58 E-value=0.00033 Score=80.07 Aligned_cols=85 Identities=21% Similarity=0.255 Sum_probs=58.7
Q ss_pred hccCCEEEEEEecCCCCChhHHHH-HHHHHHcCCCEEEEEecCCCCCCCh-HHHHHHHHhcCCCCCCCCCCCcEEEEecC
Q 001745 563 ARVTDIAVIVVAADDGIRPQTNEA-IAHAKAAGVPIVIAINKIDKDGANP-ERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (1018)
Q Consensus 563 ~~~ADiVILVVDAddGv~~QT~E~-I~~ak~~gIPIIVVINKiDL~~a~~-erv~~eL~e~gl~~e~~g~~vpiVeISAk 640 (1018)
+.++|.+++|++..........+. +..+...++|+++|+||+|+..... ..+...+..+ ..+ .++++++||+
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y----~~~--g~~v~~vSA~ 191 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIY----RNI--GYRVLMVSSH 191 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHH----HhC--CCeEEEEeCC
Confidence 577999999999876665554433 3445567899999999999964321 1122222211 111 2579999999
Q ss_pred CCCChHHHHHHHH
Q 001745 641 KGEKVDDLLETIM 653 (1018)
Q Consensus 641 tGeGIdeLleaIl 653 (1018)
++.|+++|++.|.
T Consensus 192 tg~GideL~~~L~ 204 (347)
T PRK12288 192 TGEGLEELEAALT 204 (347)
T ss_pred CCcCHHHHHHHHh
Confidence 9999999999885
No 382
>PRK01889 GTPase RsgA; Reviewed
Probab=97.57 E-value=0.00037 Score=79.85 Aligned_cols=82 Identities=26% Similarity=0.336 Sum_probs=62.2
Q ss_pred hccCCEEEEEEecCCCCChhHH-HHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHhcCCCCCCCCCCCcEEEEecCC
Q 001745 563 ARVTDIAVIVVAADDGIRPQTN-EAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALK 641 (1018)
Q Consensus 563 ~~~ADiVILVVDAddGv~~QT~-E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~e~~g~~vpiVeISAkt 641 (1018)
+.++|.+++|++++..+.+... ..+..+...+++.+||+||+||... .+....++.... ..++++.+||++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~-~~~~~~~~~~~~-------~g~~Vi~vSa~~ 181 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCED-AEEKIAEVEALA-------PGVPVLAVSALD 181 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCC-HHHHHHHHHHhC-------CCCcEEEEECCC
Confidence 4789999999999877777444 4556667789999999999999643 223334444431 136899999999
Q ss_pred CCChHHHHHHH
Q 001745 642 GEKVDDLLETI 652 (1018)
Q Consensus 642 GeGIdeLleaI 652 (1018)
|.|+++|..+|
T Consensus 182 g~gl~~L~~~L 192 (356)
T PRK01889 182 GEGLDVLAAWL 192 (356)
T ss_pred CccHHHHHHHh
Confidence 99999999887
No 383
>PLN00043 elongation factor 1-alpha; Provisional
Probab=97.57 E-value=0.0024 Score=75.38 Aligned_cols=180 Identities=18% Similarity=0.242 Sum_probs=127.4
Q ss_pred cCCCccHHHHHHHHHhCCCCCeEEEEEEcccC---------CCCHhhHHHHHhcCC--EEEEec-CCC------------
Q 001745 807 VDVQGSIEAVRQALQVLPQDNVTLKFLLQATG---------DISASDVDLAVASKA--IILGFN-VKA------------ 862 (1018)
Q Consensus 807 aDv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG---------~ItesDV~lA~as~a--iIi~Fn-V~~------------ 862 (1018)
.|+-|..+=+.+.+..+..-++-+-|+.+.-| +-|..-..+|...+- +|++.| +..
T Consensus 90 iDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~~~~~~~ 169 (447)
T PLN00043 90 IDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDE 169 (447)
T ss_pred EECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhhhHHHHHH
Confidence 79999988888888888888888888888777 455666666766554 677777 332
Q ss_pred -ChhHHhHHHhcC-----ceEEEec------hH--------hHHHHHHHHHHhcccccceeeeeeEeEEEEEEeec-CCc
Q 001745 863 -PGSVKTYADNKG-----VEIRLYR------VI--------YDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSS-GSG 921 (1018)
Q Consensus 863 -~~~a~~~A~~~~-----V~I~~~~------II--------Y~Liddik~~~~~~l~~~~~e~~~G~A~V~~vF~~-~~g 921 (1018)
..+++.++++.| +.++.-+ ++ |+ -..+.+++..+..|.....---+.-|..+|+. +.|
T Consensus 170 i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~~~~~~~Wy~-g~tLl~~l~~i~~p~~~~~~plr~~I~~v~~~~g~G 248 (447)
T PLN00043 170 IVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYK-GPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIG 248 (447)
T ss_pred HHHHHHHHHHHcCCCcccceEEEEeccccccccccccCCcccc-hHHHHHHHhhcCCCccccCCCcEEEEEEEEEeCCcE
Confidence 123455555555 3232221 11 21 01233344444444332222234567799984 678
Q ss_pred eEEEEEEeeeeEeeCCcEEEeeCCEEEEEEEEeeeecccccccccccCceeEEEEccC--CCCCCCCEEEE
Q 001745 922 RVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADY--DDLEEGDIIEA 990 (1018)
Q Consensus 922 ~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~i~SLk~~k~dV~ev~~G~EcGi~i~~f--~d~~~GD~ie~ 990 (1018)
.|+..+|..|.|+.|..+.+...|. ..+|.||..+.++|.++.+|+-|||.|.+. .+++.||+|-.
T Consensus 249 ~vv~G~V~~G~l~~Gd~v~~~P~~~---~~~VksI~~~~~~v~~a~aGd~v~i~l~~~~~~~i~rG~vl~~ 316 (447)
T PLN00043 249 TVPVGRVETGVIKPGMVVTFGPTGL---TTEVKSVEMHHESLQEALPGDNVGFNVKNVAVKDLKRGYVASN 316 (447)
T ss_pred EEEEEEEECCEEeeCCEEEEcCCCC---EEEEEEEEECCeEeCEecCCCeEEEEECCCCHhhCCCccEEcc
Confidence 9999999999999999999998775 579999999999999999999999999987 68999999843
No 384
>PRK12735 elongation factor Tu; Reviewed
Probab=97.56 E-value=0.0034 Score=72.91 Aligned_cols=182 Identities=16% Similarity=0.196 Sum_probs=119.9
Q ss_pred CCCccHHHHHHHHHhCCCCCeEEEEEEcccCC--CCHhhHHHHHhcC-C-EEEEec-CCCC-h---------hHHhHHHh
Q 001745 808 DVQGSIEAVRQALQVLPQDNVTLKFLLQATGD--ISASDVDLAVASK-A-IILGFN-VKAP-G---------SVKTYADN 872 (1018)
Q Consensus 808 Dv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG~--ItesDV~lA~as~-a-iIi~Fn-V~~~-~---------~a~~~A~~ 872 (1018)
|+-|--+=+...+..+..-++-+-|+.+.-|. -+..=+.++...+ . +|+.+| +... . +++++.+.
T Consensus 81 DtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~ 160 (396)
T PRK12735 81 DCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSK 160 (396)
T ss_pred ECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHH
Confidence 88887666666777777777777788776553 2223344444444 2 445677 2221 1 22223333
Q ss_pred cC-----ceEEEechHh-----------HHHHHHHHHHhcccc-cceeeeeeEeEEEEEEeec-CCceEEEEEEeeeeEe
Q 001745 873 KG-----VEIRLYRVIY-----------DLIDDMRNAMEGLLE-TVEEQVPIGSAEVRAIFSS-GSGRVAGCMVSEGKLV 934 (1018)
Q Consensus 873 ~~-----V~I~~~~IIY-----------~Liddik~~~~~~l~-~~~~e~~~G~A~V~~vF~~-~~g~IaGc~V~~G~i~ 934 (1018)
.+ +.++.-+-.. .=++++.+++...++ |.....---..-|-.+|+. +.|.|+..+|.+|.|+
T Consensus 161 ~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~~p~~~~~~p~r~~I~~~f~v~g~Gtvv~G~v~~G~i~ 240 (396)
T PRK12735 161 YDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIPEPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIVK 240 (396)
T ss_pred cCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCCCCCccCCCCeEEEEEEEEecCCceEEEEEEEEecEEe
Confidence 22 4444333322 235666667776664 3222222234567789984 6789999999999999
Q ss_pred eCCcEEEeeCCEEEEEEEEeeeecccccccccccCceeEEEEccC--CCCCCCCEEEE
Q 001745 935 KGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADY--DDLEEGDIIEA 990 (1018)
Q Consensus 935 ~~~~vrviR~g~vi~~G~i~SLk~~k~dV~ev~~G~EcGi~i~~f--~d~~~GD~ie~ 990 (1018)
.|..+.++-.+. -...+|.||+.+.++|.++.+|+-|||.+.+. ++++.||+|-.
T Consensus 241 ~gd~v~i~p~~~-~~~~~VksI~~~~~~v~~a~aGd~v~l~L~~i~~~~i~rG~vl~~ 297 (396)
T PRK12735 241 VGDEVEIVGIKE-TQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGTKREDVERGQVLAK 297 (396)
T ss_pred CCCEEEEecCCC-CeEEEEEEEEECCeEeCEECCCCEEEEEeCCCcHHHCCcceEEEc
Confidence 999999886431 13578999999999999999999999999875 58999999854
No 385
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=97.55 E-value=0.00042 Score=62.94 Aligned_cols=76 Identities=18% Similarity=0.262 Sum_probs=60.6
Q ss_pred cceEEEEeeecCCCcEEEEEeEeeEEecCCEEEEcc--ceeEEEEEec---cCCCcccccCCCccEEEeccCCCCCCCCe
Q 001745 670 KGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE--AFGKVRALFD---DSGNRVDEAGPSIPVQIIGLNGVPIAGDE 744 (1018)
Q Consensus 670 ~g~ViEs~~dkg~G~VatglV~~GtLkvGD~Vv~G~--~~gKVRaI~~---~~g~~V~eA~pg~~V~V~Gl~~vP~aGd~ 744 (1018)
.+.|+.+..++..|.++.++|.+|+|++||.|.+-. ...+|..|+. ....++++|.+|+.+.+.|++++ ..||.
T Consensus 2 ~a~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~-~~Gdt 80 (83)
T cd04092 2 CALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTGKKERISRLLQPFADQYQEIPSLSAGNIGVITGLKQT-RTGDT 80 (83)
T ss_pred EEEEEecccCCCCCeEEEEEEecCEECCCCEEEECCCCCEEEeeEEEEEECCCceECCeeCCCCEEEEECCCCc-ccCCE
Confidence 467888888999999999999999999999997632 2344555544 34467899999999999999886 68887
Q ss_pred EE
Q 001745 745 FE 746 (1018)
Q Consensus 745 ~~ 746 (1018)
+.
T Consensus 81 l~ 82 (83)
T cd04092 81 LV 82 (83)
T ss_pred Ee
Confidence 63
No 386
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=97.54 E-value=0.00026 Score=62.37 Aligned_cols=68 Identities=35% Similarity=0.458 Sum_probs=60.2
Q ss_pred ceEEEEEEeeeeEeeCCcEEEeeC--CEEEEEEEEeeeecccccccccccCceeEEEEcc--CCC-CCCCCEE
Q 001745 921 GRVAGCMVSEGKLVKGCGIRVIRD--GKTVHVGVLDSLRRVKENVKEVNAGLECGVGAAD--YDD-LEEGDII 988 (1018)
Q Consensus 921 g~IaGc~V~~G~i~~~~~vrviR~--g~vi~~G~i~SLk~~k~dV~ev~~G~EcGi~i~~--f~d-~~~GD~i 988 (1018)
|.|+.++|.+|+|++|..++++++ +.--..++|.+|..++.++.+...|..||+.+.. .++ ++.||+|
T Consensus 1 G~v~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~i~~Gdtl 73 (74)
T PF03144_consen 1 GRVATGRVYSGTLKKGDKVRVLPNGTGKKGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGLNDAIRRGDTL 73 (74)
T ss_dssp EEEEEEEEEESEEETTEEEEEESTTTTEECEEEEEEEEEETTEEESEEETTEEEEEEEESSSGCSCSSTTEEE
T ss_pred CEEEEEEEEEeEEcCCCEEEECccCCcceeeeeecccccccccCccEeCCceeeEEEEEEcCCCCCcCcCCEE
Confidence 679999999999999999999763 2323669999999999999999999999999886 778 8999997
No 387
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=97.54 E-value=0.00038 Score=63.47 Aligned_cols=62 Identities=19% Similarity=0.283 Sum_probs=53.4
Q ss_pred CcceEEEEeeecCCCcEEEEEeEeeEEecCCEEEEcc--ceeEEEEEeccCCCcccccCCCccEEE
Q 001745 669 AKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE--AFGKVRALFDDSGNRVDEAGPSIPVQI 732 (1018)
Q Consensus 669 ~~g~ViEs~~dkg~G~VatglV~~GtLkvGD~Vv~G~--~~gKVRaI~~~~g~~V~eA~pg~~V~V 732 (1018)
+...|.+++..+ .|++++|+|.+|++++||.+.+.+ ...+|++|+.+ ++.+++|.||+.|.+
T Consensus 2 ~r~~V~~v~~~~-~g~vv~G~v~~G~i~~Gd~v~i~P~~~~~~V~si~~~-~~~~~~a~aGd~v~~ 65 (83)
T cd03698 2 FRLPISDKYKDQ-GGTVVSGKVESGSIQKGDTLLVMPSKESVEVKSIYVD-DEEVDYAVAGENVRL 65 (83)
T ss_pred eEEEEEeEEEcC-CCcEEEEEEeeeEEeCCCEEEEeCCCcEEEEEEEEEC-CeECCEECCCCEEEE
Confidence 445677777667 999999999999999999999966 47899999987 688999999999974
No 388
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=97.52 E-value=0.00053 Score=62.53 Aligned_cols=75 Identities=25% Similarity=0.283 Sum_probs=59.6
Q ss_pred cceEEEEeeecCCCcEEEEEeEeeEEecCCEEEE-cc----ceeEEEEEecc---CCCcccccCCCccEEEeccCCCCCC
Q 001745 670 KGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVC-GE----AFGKVRALFDD---SGNRVDEAGPSIPVQIIGLNGVPIA 741 (1018)
Q Consensus 670 ~g~ViEs~~dkg~G~VatglV~~GtLkvGD~Vv~-G~----~~gKVRaI~~~---~g~~V~eA~pg~~V~V~Gl~~vP~a 741 (1018)
.+.|+.+..++..|.++.++|.+|+|++||.|.+ .. ...+|..|+.. +..+++++.||+.+.+.|++++ ..
T Consensus 2 ~~~vfk~~~d~~~g~i~~~Rv~sG~l~~g~~v~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~i~gl~~~-~~ 80 (86)
T cd03691 2 QMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKRVEVEEAEAGDIVAIAGIEDI-TI 80 (86)
T ss_pred eEEEEEeEecCCCCeEEEEEEEeCEEcCCCEEEEEcCCCCEEEEEEeeEeeeeCCCeeECcEECCCCEEEEECCCCC-cc
Confidence 4678888899999999999999999999999965 22 12456666443 3356899999999999999887 58
Q ss_pred CCeE
Q 001745 742 GDEF 745 (1018)
Q Consensus 742 Gd~~ 745 (1018)
||.+
T Consensus 81 Gdtl 84 (86)
T cd03691 81 GDTI 84 (86)
T ss_pred ccee
Confidence 8765
No 389
>PLN03127 Elongation factor Tu; Provisional
Probab=97.52 E-value=0.0045 Score=73.23 Aligned_cols=181 Identities=17% Similarity=0.212 Sum_probs=117.3
Q ss_pred CCCccHHHHHHHHHhCCCCCeEEEEEEcccC--CCCHhhHHHHHhcCC--EEEEec-CCC-C-hhHHhHH--------Hh
Q 001745 808 DVQGSIEAVRQALQVLPQDNVTLKFLLQATG--DISASDVDLAVASKA--IILGFN-VKA-P-GSVKTYA--------DN 872 (1018)
Q Consensus 808 Dv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG--~ItesDV~lA~as~a--iIi~Fn-V~~-~-~~a~~~A--------~~ 872 (1018)
|+-|--.-+.+.+..+..-++-+-|+.+.-| +-|+.-+.++...+- +|+..| +.. + .+..+.. ..
T Consensus 130 DtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~ 209 (447)
T PLN03127 130 DCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEELLELVEMELRELLSF 209 (447)
T ss_pred ECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHH
Confidence 8888655566666666666788888887655 334444555655553 456667 222 1 2211111 11
Q ss_pred -----cCceEEEechHh-----------HHHHHHHHHHhcccc-cceeeeeeEeEEEEEEeec-CCceEEEEEEeeeeEe
Q 001745 873 -----KGVEIRLYRVIY-----------DLIDDMRNAMEGLLE-TVEEQVPIGSAEVRAIFSS-GSGRVAGCMVSEGKLV 934 (1018)
Q Consensus 873 -----~~V~I~~~~IIY-----------~Liddik~~~~~~l~-~~~~e~~~G~A~V~~vF~~-~~g~IaGc~V~~G~i~ 934 (1018)
..+.|+.-+-+. +-++.+.+++...++ |.....---..-|..+|+. +.|.|+..+|..|.|+
T Consensus 210 ~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~p~r~~~~pfr~~I~~vf~v~g~GtVvtG~v~~G~i~ 289 (447)
T PLN03127 210 YKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPEPVRVLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIK 289 (447)
T ss_pred hCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCCCCcccccceEeeEEEEEEcCCceEEEEEEEEccEEe
Confidence 135553222110 113455555655554 3222221234457799984 6799999999999999
Q ss_pred eCCcEEEee---CCEEEEEEEEeeeecccccccccccCceeEEEEccC--CCCCCCCEEEE
Q 001745 935 KGCGIRVIR---DGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADY--DDLEEGDIIEA 990 (1018)
Q Consensus 935 ~~~~vrviR---~g~vi~~G~i~SLk~~k~dV~ev~~G~EcGi~i~~f--~d~~~GD~ie~ 990 (1018)
.|..+.++- +|. ...+|.||+.++++|.++.+|+-|||.+.+. .+++.||+|-.
T Consensus 290 ~Gd~v~i~p~~~~g~--~~~~VksI~~~~~~v~~a~aGd~v~l~L~~i~~~~i~rG~Vl~~ 348 (447)
T PLN03127 290 VGEEVEIVGLRPGGP--LKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDVQRGQVICK 348 (447)
T ss_pred cCCEEEEcccCCCCc--EEEEEEEEEEECcEeCEEcCCCEEEEEeCCCCHHHCCCccEEec
Confidence 999998882 332 4679999999999999999999999999975 58999999854
No 390
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=97.51 E-value=0.00046 Score=62.47 Aligned_cols=75 Identities=23% Similarity=0.267 Sum_probs=60.0
Q ss_pred cceEEEEeeecCCCcEEEEEeEeeEEecCCEEEEcc--ceeEEEEEecc---CCCcccccCCCccEEEeccCCCCCCCCe
Q 001745 670 KGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE--AFGKVRALFDD---SGNRVDEAGPSIPVQIIGLNGVPIAGDE 744 (1018)
Q Consensus 670 ~g~ViEs~~dkg~G~VatglV~~GtLkvGD~Vv~G~--~~gKVRaI~~~---~g~~V~eA~pg~~V~V~Gl~~vP~aGd~ 744 (1018)
.+.|+.+..++..|.++.++|.+|+|++||.|..-. ...+|..|+.. ...+++++.||+.+.+.|++++ ..||.
T Consensus 2 ~a~Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~g~~~~-~~Gdt 80 (83)
T cd04088 2 VALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKGKKERVGRLLRMHGKKQEEVEEAGAGDIGAVAGLKDT-ATGDT 80 (83)
T ss_pred EEEEEEcccCCCCceEEEEEEecCEEcCCCEEEECCCCcEEEeeEEEEEcCCCceECCEeCCCCEEEEECCCCC-ccCCE
Confidence 467888888888999999999999999999997632 23455565443 3456899999999999999886 68887
Q ss_pred E
Q 001745 745 F 745 (1018)
Q Consensus 745 ~ 745 (1018)
+
T Consensus 81 l 81 (83)
T cd04088 81 L 81 (83)
T ss_pred e
Confidence 6
No 391
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.49 E-value=0.0041 Score=72.09 Aligned_cols=179 Identities=16% Similarity=0.206 Sum_probs=117.6
Q ss_pred CCCccHHHHHHHHHhCCCCCeEEEEEEcccC--CCCHhhHHHHHhcCC--EEEEec-CCC-Ch---------hHHhHHHh
Q 001745 808 DVQGSIEAVRQALQVLPQDNVTLKFLLQATG--DISASDVDLAVASKA--IILGFN-VKA-PG---------SVKTYADN 872 (1018)
Q Consensus 808 Dv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG--~ItesDV~lA~as~a--iIi~Fn-V~~-~~---------~a~~~A~~ 872 (1018)
|+-|--+=+.+.+..+..-++-+-|+.+.-| +-|..-+.++...+- +|+++| +.. ++ ++++++++
T Consensus 81 DtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~ 160 (394)
T TIGR00485 81 DCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSE 160 (394)
T ss_pred ECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHh
Confidence 8888766666666666666777777777655 334445555655542 456777 221 11 12333333
Q ss_pred cC-----ceEEEec---------hHhHHHHHHHHHHhcccc-cceeeeeeEeEEEEEEeec-CCceEEEEEEeeeeEeeC
Q 001745 873 KG-----VEIRLYR---------VIYDLIDDMRNAMEGLLE-TVEEQVPIGSAEVRAIFSS-GSGRVAGCMVSEGKLVKG 936 (1018)
Q Consensus 873 ~~-----V~I~~~~---------IIY~Liddik~~~~~~l~-~~~~e~~~G~A~V~~vF~~-~~g~IaGc~V~~G~i~~~ 936 (1018)
.+ +.++.-+ -.|+-+..+-+++...++ |.....---..-|-.+|+. +.|.|+..+|.+|.|+.|
T Consensus 161 ~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~~~~~~~~~p~r~~V~~vf~~~g~G~Vv~G~v~~G~l~~g 240 (394)
T TIGR00485 161 YDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYIPTPERETDKPFLMPIEDVFSITGRGTVVTGRVERGIVKVG 240 (394)
T ss_pred cCCCccCccEEECccccccccCCchhHhHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCCceEEEEEEEEeeEEeCC
Confidence 33 4554322 234333445555555443 2222211234567789984 679999999999999999
Q ss_pred CcEEEee--CCEEEEEEEEeeeecccccccccccCceeEEEEccC--CCCCCCCEEE
Q 001745 937 CGIRVIR--DGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADY--DDLEEGDIIE 989 (1018)
Q Consensus 937 ~~vrviR--~g~vi~~G~i~SLk~~k~dV~ev~~G~EcGi~i~~f--~d~~~GD~ie 989 (1018)
..+.++- .+. ..+|.||+.+.+++.++.+|+-|||.+.+. .+++.||+|-
T Consensus 241 d~v~i~p~~~~~---~~~VksI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~rG~vl~ 294 (394)
T TIGR00485 241 EEVEIVGLKDTR---KTTVTGVEMFRKELDEGRAGDNVGLLLRGIKREEIERGMVLA 294 (394)
T ss_pred CEEEEecCCCCc---EEEEEEEEECCeEEEEECCCCEEEEEeCCccHHHCCccEEEe
Confidence 9998874 232 478999999999999999999999999876 5799999983
No 392
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.49 E-value=8.9e-05 Score=84.90 Aligned_cols=110 Identities=13% Similarity=0.123 Sum_probs=64.5
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCc------ccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHH---HH-
Q 001745 491 PPVLTIMGHVDHGKTTLLDHIRKTK------VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAM---RA- 560 (1018)
Q Consensus 491 ~pkVaImGhvdvGKTTLLnrL~~~~------v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~---r~- 560 (1018)
...|.++|.+|+|||||+|+|.+.. ...+..+|+|+++..+. .++ .+.++||||......+ ..
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~----~~~---~~~l~DtPG~~~~~~~~~~l~~ 226 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIP----LDD---GHSLYDTPGIINSHQMAHYLDK 226 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEE----eCC---CCEEEECCCCCChhHhhhhcCH
Confidence 4689999999999999999998642 34567789998864333 222 3689999994322111 10
Q ss_pred ---hh---hccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCC
Q 001745 561 ---RG---ARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKD 607 (1018)
Q Consensus 561 ---rg---~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~ 607 (1018)
.. -+......+.++....+...-...+..+...+..+.+.++|.+..
T Consensus 227 ~~l~~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~~~~~~~~~~~~~~~~ 279 (360)
T TIGR03597 227 KDLKYITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKGEKTSFTFYVSNELNI 279 (360)
T ss_pred HHHhhcCCCCccCceEEEeCCCCEEEEceEEEEEEecCCceEEEEEccCCcee
Confidence 01 123455666665544322222222222222344567777777764
No 393
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.47 E-value=0.00034 Score=80.42 Aligned_cols=86 Identities=24% Similarity=0.123 Sum_probs=64.2
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcc-cccccCCceeeeeeEEEEEecC-------------CceecEEEEeCCCc-----
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVD-------------GKLQPCVFLDTPGH----- 552 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v-~~~e~gGiTqdIga~~V~i~~d-------------gk~~~ItfIDTPGH----- 552 (1018)
.+++|+|.||+|||||+++|++... ....++.+|.+.....+.++-. -....+.|+|.||-
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 5799999999999999999999887 6666777877766655554210 01235899999993
Q ss_pred --cchHHHHHhhhccCCEEEEEEecCC
Q 001745 553 --EAFGAMRARGARVTDIAVIVVAADD 577 (1018)
Q Consensus 553 --E~F~~~r~rg~~~ADiVILVVDAdd 577 (1018)
+-+.......++.+|++++|+++.+
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 2244455567799999999999864
No 394
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=97.46 E-value=0.00058 Score=62.94 Aligned_cols=75 Identities=17% Similarity=0.194 Sum_probs=59.2
Q ss_pred ceEEEEee---ecCCCcEEEEEeEeeEEecCCEEEEcc--ceeEEEEEec---cCCCcccccCCCccEEEeccCCCCCCC
Q 001745 671 GTVIEAGL---HKSKGPVATFILQNGTLKKGDVVVCGE--AFGKVRALFD---DSGNRVDEAGPSIPVQIIGLNGVPIAG 742 (1018)
Q Consensus 671 g~ViEs~~---dkg~G~VatglV~~GtLkvGD~Vv~G~--~~gKVRaI~~---~~g~~V~eA~pg~~V~V~Gl~~vP~aG 742 (1018)
+.|+.+.. ++..|.+++++|.+|+|+.||.|.... ...+|..|+. .....+++|.||+.+.+.|++++ ..|
T Consensus 1 ~~vfKv~~~~~~~~~Gkla~~Rv~sG~l~~g~~v~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~v~gl~~~-~~G 79 (85)
T cd03689 1 GFVFKIQANMDPAHRDRIAFVRVCSGKFERGMKVKHVRLGKEVRLSNPQQFFAQDRETVDEAYPGDIIGLVNPGNF-QIG 79 (85)
T ss_pred CEEEEEecccCCCCCcEEEEEEEECCEEcCCCEEEEcCCCCEEEeeEeEEEecCCeeEcCEECCCCEEEEECCCCc-ccc
Confidence 35677777 888999999999999999999997632 2345555544 44466899999999999999887 689
Q ss_pred CeEE
Q 001745 743 DEFE 746 (1018)
Q Consensus 743 d~~~ 746 (1018)
|.+.
T Consensus 80 dtl~ 83 (85)
T cd03689 80 DTLT 83 (85)
T ss_pred CEee
Confidence 8763
No 395
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.44 E-value=0.00022 Score=73.37 Aligned_cols=87 Identities=18% Similarity=0.260 Sum_probs=45.9
Q ss_pred HHHHhcCCceeecChhhhHHhhhhcccCChhhhhccCCCCCEEEEEeCCCCCHHHHHHHHHcCcc-ccc---cc----CC
Q 001745 452 MICKDYEVEVLDADPVKMEEMARKKDLFDEEDLDKLEDRPPVLTIMGHVDHGKTTLLDHIRKTKV-AAA---EA----GG 523 (1018)
Q Consensus 452 lla~E~g~~v~~~~~~~~e~l~~~~~~~~ee~~~~l~~r~pkVaImGhvdvGKTTLLnrL~~~~v-~~~---e~----gG 523 (1018)
...+.+|+++...+....+.+ +++...... ..++++|++|+|||||+|.|..... ... +. ..
T Consensus 6 ~~y~~~gy~v~~~S~~~~~g~---------~~l~~~l~~-k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkH 75 (161)
T PF03193_consen 6 EQYEKLGYPVFFISAKTGEGI---------EELKELLKG-KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKH 75 (161)
T ss_dssp HHHHHTTSEEEE-BTTTTTTH---------HHHHHHHTT-SEEEEECSTTSSHHHHHHHHHTSS----S-----------
T ss_pred HHHHHcCCcEEEEeCCCCcCH---------HHHHHHhcC-CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcc
Confidence 345778888765432211111 112222223 7899999999999999999986532 111 11 12
Q ss_pred ceeeeeeEEEEEecCCceecEEEEeCCCccch
Q 001745 524 ITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAF 555 (1018)
Q Consensus 524 iTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F 555 (1018)
+|++...+.+ .. ...+|||||...|
T Consensus 76 TTt~~~l~~l----~~---g~~iIDTPGf~~~ 100 (161)
T PF03193_consen 76 TTTHRELFPL----PD---GGYIIDTPGFRSF 100 (161)
T ss_dssp ---SEEEEEE----TT---SEEEECSHHHHT-
T ss_pred cCCCeeEEec----CC---CcEEEECCCCCcc
Confidence 3444333222 22 3689999995444
No 396
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.43 E-value=0.0014 Score=75.71 Aligned_cols=148 Identities=22% Similarity=0.274 Sum_probs=78.8
Q ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHcCcccc-c--ccCCceee------------------eeeEEEEEe-------cC
Q 001745 487 LEDRPPVLTIMGHVDHGKTTLLDHIRKTKVAA-A--EAGGITQG------------------IGAYKVQVP-------VD 538 (1018)
Q Consensus 487 l~~r~pkVaImGhvdvGKTTLLnrL~~~~v~~-~--e~gGiTqd------------------Iga~~V~i~-------~d 538 (1018)
...+..+++++|++|+||||++.+|....... + ...-+|.| +..+.+... ..
T Consensus 133 ~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~ 212 (374)
T PRK14722 133 LMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE 212 (374)
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH
Confidence 35567899999999999999999886321100 0 00111111 111111100 01
Q ss_pred CceecEEEEeCCCccchHHHH---Hh---hhccCCEEEEEEecCCCCChhHHHHHHHHHH-cCCC-------EEEEEecC
Q 001745 539 GKLQPCVFLDTPGHEAFGAMR---AR---GARVTDIAVIVVAADDGIRPQTNEAIAHAKA-AGVP-------IVIAINKI 604 (1018)
Q Consensus 539 gk~~~ItfIDTPGHE~F~~~r---~r---g~~~ADiVILVVDAddGv~~QT~E~I~~ak~-~gIP-------IIVVINKi 604 (1018)
..++.+.||||||...+.... .. .....+-.+||++++.+...-+ +.+..... .+.| -=++++|.
T Consensus 213 l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~-evi~~f~~~~~~p~~~~~~~~~~I~TKl 291 (374)
T PRK14722 213 LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLN-EVVQAYRSAAGQPKAALPDLAGCILTKL 291 (374)
T ss_pred hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHH-HHHHHHHHhhcccccccCCCCEEEEecc
Confidence 134679999999955332221 12 2233456799999987432222 22332222 2221 24667999
Q ss_pred CCCCCChHHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCChHH
Q 001745 605 DKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDD 647 (1018)
Q Consensus 605 DL~~a~~erv~~eL~e~gl~~e~~g~~vpiVeISAktGeGIde 647 (1018)
|-.. ..-.+...+...+ .|+..++ +|++|.+
T Consensus 292 DEt~-~~G~~l~~~~~~~---------lPi~yvt--~Gq~VPe 322 (374)
T PRK14722 292 DEAS-NLGGVLDTVIRYK---------LPVHYVS--TGQKVPE 322 (374)
T ss_pred ccCC-CccHHHHHHHHHC---------cCeEEEe--cCCCCCc
Confidence 9742 4555666665554 3455543 5777765
No 397
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.43 E-value=0.0012 Score=75.27 Aligned_cols=80 Identities=19% Similarity=0.102 Sum_probs=57.7
Q ss_pred ceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEEEEecCCC-----------CChhHHHHHHHHHH
Q 001745 524 ITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDG-----------IRPQTNEAIAHAKA 592 (1018)
Q Consensus 524 iTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVILVVDAddG-----------v~~QT~E~I~~ak~ 592 (1018)
.|.++....+.+ .+..+.+||.+|+..++..|..++..++++|+|+|.++- .+.+..+.+..+..
T Consensus 170 ~T~Gi~~~~f~~----~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~ 245 (342)
T smart00275 170 PTTGIQETAFIV----KKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICN 245 (342)
T ss_pred CccceEEEEEEE----CCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHc
Confidence 454544444333 346799999999999999999999999999999999862 12223333333322
Q ss_pred ----cCCCEEEEEecCCCC
Q 001745 593 ----AGVPIVIAINKIDKD 607 (1018)
Q Consensus 593 ----~gIPIIVVINKiDL~ 607 (1018)
.++|+++++||+|+.
T Consensus 246 ~~~~~~~piil~~NK~D~~ 264 (342)
T smart00275 246 SRWFANTSIILFLNKIDLF 264 (342)
T ss_pred CccccCCcEEEEEecHHhH
Confidence 478999999999983
No 398
>CHL00071 tufA elongation factor Tu
Probab=97.42 E-value=0.0066 Score=70.82 Aligned_cols=180 Identities=17% Similarity=0.232 Sum_probs=117.5
Q ss_pred CCCccHHHHHHHHHhCCCCCeEEEEEEcccC--CCCHhhHHHHHhcC-C-EEEEec-CCC-Chh---------HHhHHHh
Q 001745 808 DVQGSIEAVRQALQVLPQDNVTLKFLLQATG--DISASDVDLAVASK-A-IILGFN-VKA-PGS---------VKTYADN 872 (1018)
Q Consensus 808 Dv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG--~ItesDV~lA~as~-a-iIi~Fn-V~~-~~~---------a~~~A~~ 872 (1018)
|+-|--+-+...+..+..-++-+-|+.+.-| +-|+.=+.++...+ . +|++.| +.. +.+ +.++.++
T Consensus 81 DtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~ 160 (409)
T CHL00071 81 DCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELLSK 160 (409)
T ss_pred ECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHH
Confidence 8888666667777777767787888877654 23333344454444 3 567777 332 211 1222222
Q ss_pred cC-----ceEEEec------h-------------HhHHHHHHHHHHhcccc-cceeeeeeEeEEEEEEeec-CCceEEEE
Q 001745 873 KG-----VEIRLYR------V-------------IYDLIDDMRNAMEGLLE-TVEEQVPIGSAEVRAIFSS-GSGRVAGC 926 (1018)
Q Consensus 873 ~~-----V~I~~~~------I-------------IY~Liddik~~~~~~l~-~~~~e~~~G~A~V~~vF~~-~~g~IaGc 926 (1018)
.+ +.|..-+ + -|+-+..+.+++...++ |.....---..-|-.+|.. +.|.|+.-
T Consensus 161 ~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~I~~v~~~~g~G~Vv~G 240 (409)
T CHL00071 161 YDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIPTPERDTDKPFLMAIEDVFSITGRGTVATG 240 (409)
T ss_pred hCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCCCCCCCCCCCEEEEEEEEEEeCCCeEEEEE
Confidence 22 4444211 1 14444555556665553 2222222234567789974 67999999
Q ss_pred EEeeeeEeeCCcEEEee--CCEEEEEEEEeeeecccccccccccCceeEEEEccCC--CCCCCCEEEE
Q 001745 927 MVSEGKLVKGCGIRVIR--DGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYD--DLEEGDIIEA 990 (1018)
Q Consensus 927 ~V~~G~i~~~~~vrviR--~g~vi~~G~i~SLk~~k~dV~ev~~G~EcGi~i~~f~--d~~~GD~ie~ 990 (1018)
+|..|.|+.|..+.++- ++ ...+|.||+.+.+.+.++.+|+-|||.+.+++ +++.||+|-.
T Consensus 241 ~V~sG~l~~Gd~v~i~p~~~~---~~~~VksI~~~~~~v~~a~aGd~v~i~l~~i~~~~i~~G~vl~~ 305 (409)
T CHL00071 241 RIERGTVKVGDTVEIVGLRET---KTTTVTGLEMFQKTLDEGLAGDNVGILLRGIQKEDIERGMVLAK 305 (409)
T ss_pred EEecCEEeeCCEEEEeeCCCC---cEEEEEEEEEcCcCCCEECCCceeEEEEcCCCHHHcCCeEEEec
Confidence 99999999999998763 34 35799999999999999999999999998765 8999999853
No 399
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=97.41 E-value=0.0046 Score=72.24 Aligned_cols=181 Identities=17% Similarity=0.235 Sum_probs=120.0
Q ss_pred EcCCCccHHHHHHHHHhCCCCCeEEEEEEcccCC-----CCHhhHHHHHhcC--CEEEEec-CCC---Ch--------hH
Q 001745 806 KVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGD-----ISASDVDLAVASK--AIILGFN-VKA---PG--------SV 866 (1018)
Q Consensus 806 KaDv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG~-----ItesDV~lA~as~--aiIi~Fn-V~~---~~--------~a 866 (1018)
=-|+-|.-+-+...+..+..-++-+-|+.+.-|. -+...+.++...+ -+|+..| +.. +. ++
T Consensus 89 iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~~~~ei 168 (426)
T TIGR00483 89 IVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFEAIKKEV 168 (426)
T ss_pred EEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHHHHHHHH
Confidence 3588886555556666666677888888887762 2333445555544 3566666 222 11 23
Q ss_pred HhHHHhcC-----ceEEEec-----hHhHH--------HHHHHHHHhcccccceeeeeeEeEEEEEEeec-CCceEEEEE
Q 001745 867 KTYADNKG-----VEIRLYR-----VIYDL--------IDDMRNAMEGLLETVEEQVPIGSAEVRAIFSS-GSGRVAGCM 927 (1018)
Q Consensus 867 ~~~A~~~~-----V~I~~~~-----IIY~L--------iddik~~~~~~l~~~~~e~~~G~A~V~~vF~~-~~g~IaGc~ 927 (1018)
++++++.+ +.++.-+ -|.++ -.++.+++..+.+|.....---+..|-.+|+. +.|.|+.-+
T Consensus 169 ~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~~~~w~~g~~l~~~l~~~~~~~~~~~~p~r~~i~~v~~~~g~G~vv~G~ 248 (426)
T TIGR00483 169 SNLIKKVGYNPDTVPFIPISAWNGDNVIKKSENTPWYKGKTLLEALDALEPPEKPTDKPLRIPIQDVYSITGVGTVPVGR 248 (426)
T ss_pred HHHHHHcCCCcccceEEEeeccccccccccccCCccccchHHHHHHhcCCCCCCccCCCcEEEEEEEEecCCCeEEEEEE
Confidence 34455555 2333221 12111 12355555555555432221234667789984 679999999
Q ss_pred EeeeeEeeCCcEEEeeCCEEEEEEEEeeeecccccccccccCceeEEEEccC--CCCCCCCEEE
Q 001745 928 VSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADY--DDLEEGDIIE 989 (1018)
Q Consensus 928 V~~G~i~~~~~vrviR~g~vi~~G~i~SLk~~k~dV~ev~~G~EcGi~i~~f--~d~~~GD~ie 989 (1018)
|..|.|+.|..+.+.-.|. ..+|.||..+.+++.++.+|+-|||.+.+. .+++.||+|-
T Consensus 249 v~~G~i~~gd~v~i~P~~~---~~~VksI~~~~~~~~~a~aG~~v~i~l~~i~~~~i~rG~vl~ 309 (426)
T TIGR00483 249 VETGVLKPGDKVVFEPAGV---SGEVKSIEMHHEQIEQAEPGDNIGFNVRGVSKKDIRRGDVCG 309 (426)
T ss_pred EccceeecCCEEEECCCCc---EEEEEEEEECCcccCEEcCCCEEEEEECCCChhhcccceEEe
Confidence 9999999999999987774 579999999999999999999999999975 5899999984
No 400
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=97.40 E-value=0.00094 Score=60.84 Aligned_cols=75 Identities=16% Similarity=0.178 Sum_probs=64.7
Q ss_pred EEEEEeecCCceEEEEEEeeeeEeeCCcEEEeeCCEEEEEEEEeeeecccccccccccCceeEEEEccC--CCCCCCCEE
Q 001745 911 EVRAIFSSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADY--DDLEEGDII 988 (1018)
Q Consensus 911 ~V~~vF~~~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~i~SLk~~k~dV~ev~~G~EcGi~i~~f--~d~~~GD~i 988 (1018)
-|..+|+.. |.+..-+|..|.++.|..+.+.-.+. ..+|.||+.+.+++.++.+|+-|+|.|.+. ++++.||+|
T Consensus 5 ~I~~v~~~~-g~vv~G~v~~G~i~~G~~v~i~P~~~---~~~V~si~~~~~~~~~a~aGd~v~l~l~~i~~~~v~~G~vl 80 (82)
T cd04089 5 PIIDKYKDM-GTVVLGKVESGTIKKGDKLLVMPNKT---QVEVLSIYNEDVEVRYARPGENVRLRLKGIEEEDISPGFVL 80 (82)
T ss_pred EEEeEEEcC-CEEEEEEEeeeEEecCCEEEEeCCCc---EEEEEEEEECCEECCEECCCCEEEEEecCCCHHHCCCCCEE
Confidence 356788754 77777799999999999999988774 578999999999999999999999999965 589999987
Q ss_pred E
Q 001745 989 E 989 (1018)
Q Consensus 989 e 989 (1018)
-
T Consensus 81 ~ 81 (82)
T cd04089 81 C 81 (82)
T ss_pred e
Confidence 3
No 401
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.39 E-value=0.00073 Score=76.20 Aligned_cols=79 Identities=19% Similarity=0.127 Sum_probs=57.2
Q ss_pred ceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEEEEecCCCC-----------ChhHHHHHHHHHH
Q 001745 524 ITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGI-----------RPQTNEAIAHAKA 592 (1018)
Q Consensus 524 iTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVILVVDAddGv-----------~~QT~E~I~~ak~ 592 (1018)
.|.++....+.+ .+..+.+||++|+..++..|..++..++++|+|+|.++-. +.+..+.+..+..
T Consensus 147 ~T~Gi~~~~f~~----~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~ 222 (317)
T cd00066 147 KTTGIVETKFTI----KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICN 222 (317)
T ss_pred ccCCeeEEEEEe----cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHh
Confidence 454554444433 3577999999999999999999999999999999998621 2222233322222
Q ss_pred ----cCCCEEEEEecCCC
Q 001745 593 ----AGVPIVIAINKIDK 606 (1018)
Q Consensus 593 ----~gIPIIVVINKiDL 606 (1018)
.++|+++++||+|+
T Consensus 223 ~~~~~~~pill~~NK~D~ 240 (317)
T cd00066 223 SRWFANTSIILFLNKKDL 240 (317)
T ss_pred CccccCCCEEEEccChHH
Confidence 47899999999997
No 402
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=97.38 E-value=0.0063 Score=71.08 Aligned_cols=180 Identities=18% Similarity=0.233 Sum_probs=116.6
Q ss_pred cCCCccHHHHHHHHHhCCCCCeEEEEEEcc----cCCCCHhhHHHHHhcC--CEEEEec-CCCC---h--------hHHh
Q 001745 807 VDVQGSIEAVRQALQVLPQDNVTLKFLLQA----TGDISASDVDLAVASK--AIILGFN-VKAP---G--------SVKT 868 (1018)
Q Consensus 807 aDv~GSlEAi~~~L~~l~~~~v~i~ii~~~----VG~ItesDV~lA~as~--aiIi~Fn-V~~~---~--------~a~~ 868 (1018)
-|+-|.-+=+...+..+..-++-+-|+.+. +..-+...+.++...+ .+|+..| +... . ++++
T Consensus 89 iDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~i~~ 168 (425)
T PRK12317 89 VDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEEVKEEVSK 168 (425)
T ss_pred EECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHHHHHHHHH
Confidence 688885333344445555566777777663 4455666677776665 3677777 2221 1 2223
Q ss_pred HHHhcC-----ceEEEech-----HhHHH--------HHHHHHHhcccccceeeeeeEeEEEEEEeec-CCceEEEEEEe
Q 001745 869 YADNKG-----VEIRLYRV-----IYDLI--------DDMRNAMEGLLETVEEQVPIGSAEVRAIFSS-GSGRVAGCMVS 929 (1018)
Q Consensus 869 ~A~~~~-----V~I~~~~I-----IY~Li--------ddik~~~~~~l~~~~~e~~~G~A~V~~vF~~-~~g~IaGc~V~ 929 (1018)
+++..+ +.|+.-+- |-++. ..+.++|..+..|.....---..-|..+|.. +.|.|+..+|.
T Consensus 169 ~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~~~~wy~g~~L~~~l~~~~~~~~~~~~p~r~~i~~~~~~~g~G~vv~G~v~ 248 (425)
T PRK12317 169 LLKMVGYKPDDIPFIPVSAFEGDNVVKKSENMPWYNGPTLLEALDNLKPPEKPTDKPLRIPIQDVYSISGVGTVPVGRVE 248 (425)
T ss_pred HHHhhCCCcCcceEEEeecccCCCccccccCCCcccHHHHHHHHhcCCCCccccCCCcEEEEEEEEeeCCCeEEEEEEEe
Confidence 343444 23432221 11111 1344555554444322211224567789984 67999999999
Q ss_pred eeeEeeCCcEEEeeCCEEEEEEEEeeeecccccccccccCceeEEEEccCC--CCCCCCEEE
Q 001745 930 EGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYD--DLEEGDIIE 989 (1018)
Q Consensus 930 ~G~i~~~~~vrviR~g~vi~~G~i~SLk~~k~dV~ev~~G~EcGi~i~~f~--d~~~GD~ie 989 (1018)
.|.|+.|..+.++-.|. ..+|.||+.+.++|.++.+|+-|||.+.+.+ +++.||+|-
T Consensus 249 ~G~v~~Gd~v~i~P~~~---~~~VksI~~~~~~~~~a~aG~~v~i~l~~~~~~~i~rG~vl~ 307 (425)
T PRK12317 249 TGVLKVGDKVVFMPAGV---VGEVKSIEMHHEELPQAEPGDNIGFNVRGVGKKDIKRGDVCG 307 (425)
T ss_pred eccEecCCEEEECCCCC---eEEEEEEEECCcccCEECCCCeEEEEECCCCHHHccCccEec
Confidence 99999999999987664 5799999999999999999999999999764 799999983
No 403
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=97.38 E-value=0.00075 Score=61.41 Aligned_cols=62 Identities=26% Similarity=0.209 Sum_probs=53.7
Q ss_pred ceEEEEeeecCCCcEEEEEeEeeEEecCCEEEEcc--ceeEEEEEeccCCCcccccCCCccEEEe
Q 001745 671 GTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE--AFGKVRALFDDSGNRVDEAGPSIPVQII 733 (1018)
Q Consensus 671 g~ViEs~~dkg~G~VatglV~~GtLkvGD~Vv~G~--~~gKVRaI~~~~g~~V~eA~pg~~V~V~ 733 (1018)
..|.+++..++.|++++|.|.+|++++||.+.+.+ ..++|++|+.+ ++.+++|.||+.|.+.
T Consensus 3 ~~i~~~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~~~~~~V~sI~~~-~~~~~~a~aGd~v~i~ 66 (83)
T cd03696 3 LPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLGEETRVRSIQVH-GKDVEEAKAGDRVALN 66 (83)
T ss_pred EEEEEEEEcCCcEEEEEEEEeecEEeCCCEEEECCCCceEEEEEEEEC-CcCcCEEcCCCEEEEE
Confidence 45667777788999999999999999999999965 47899999877 6889999999999763
No 404
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.38 E-value=0.0075 Score=72.50 Aligned_cols=144 Identities=20% Similarity=0.324 Sum_probs=77.9
Q ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHcC--------cccc--cccCCc-----------eeeeeeEEEEEe------c-CC
Q 001745 488 EDRPPVLTIMGHVDHGKTTLLDHIRKT--------KVAA--AEAGGI-----------TQGIGAYKVQVP------V-DG 539 (1018)
Q Consensus 488 ~~r~pkVaImGhvdvGKTTLLnrL~~~--------~v~~--~e~gGi-----------TqdIga~~V~i~------~-dg 539 (1018)
..+..+|+|+|..|+|||||+..|... ++.. .+...+ ..++.++..... + ..
T Consensus 347 l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l 426 (559)
T PRK12727 347 LERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL 426 (559)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh
Confidence 346789999999999999999887531 1111 100000 001111111000 0 11
Q ss_pred ceecEEEEeCCCccchHHHHH------hhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHH
Q 001745 540 KLQPCVFLDTPGHEAFGAMRA------RGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPER 613 (1018)
Q Consensus 540 k~~~ItfIDTPGHE~F~~~r~------rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~er 613 (1018)
..+.+.||||||...+..... .... ....+||+++..+. .+..+.++.+... .+.-+++||+|.. ...-.
T Consensus 427 ~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAtss~-~Dl~eii~~f~~~-~~~gvILTKlDEt-~~lG~ 502 (559)
T PRK12727 427 RDYKLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANAHF-SDLDEVVRRFAHA-KPQGVVLTKLDET-GRFGS 502 (559)
T ss_pred ccCCEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCCCh-hHHHHHHHHHHhh-CCeEEEEecCcCc-cchhH
Confidence 346799999999543322211 1111 23567788876532 2233445444433 4577899999984 34556
Q ss_pred HHHHHHhcCCCCCCCCCCCcEEEEecCCCCChH
Q 001745 614 VMQELSSIGLMPEDWGGDIPMVQISALKGEKVD 646 (1018)
Q Consensus 614 v~~eL~e~gl~~e~~g~~vpiVeISAktGeGId 646 (1018)
++..+...+ .|+..++ +|++|.
T Consensus 503 aLsv~~~~~---------LPI~yvt--~GQ~VP 524 (559)
T PRK12727 503 ALSVVVDHQ---------MPITWVT--DGQRVP 524 (559)
T ss_pred HHHHHHHhC---------CCEEEEe--CCCCch
Confidence 666666654 3555553 577773
No 405
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.38 E-value=0.00032 Score=69.97 Aligned_cols=56 Identities=21% Similarity=0.443 Sum_probs=39.8
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCcc-cccccCCceeeeeeEEEEEecCCceecEEEEeCCC
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG 551 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~~v-~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPG 551 (1018)
....+++++|.+++|||||+++|.+... ......|+|.+...+. .+ ..+.||||||
T Consensus 99 ~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~----~~---~~~~~~DtpG 155 (156)
T cd01859 99 GKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVK----IT---SKIYLLDTPG 155 (156)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEE----cC---CCEEEEECcC
Confidence 3567899999999999999999986543 2344556665532222 12 2589999999
No 406
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=97.37 E-value=0.00099 Score=61.50 Aligned_cols=77 Identities=26% Similarity=0.399 Sum_probs=66.2
Q ss_pred EEEEEeec-CCceEEEEEEeeeeEeeCCcEEEeeC--CEEEEEEEEeeeecccccccccccCceeEEEEccC--CCCCCC
Q 001745 911 EVRAIFSS-GSGRVAGCMVSEGKLVKGCGIRVIRD--GKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADY--DDLEEG 985 (1018)
Q Consensus 911 ~V~~vF~~-~~g~IaGc~V~~G~i~~~~~vrviR~--g~vi~~G~i~SLk~~k~dV~ev~~G~EcGi~i~~f--~d~~~G 985 (1018)
-|..+|+. +.|.|+.-+|..|.++.|..+.++-. |+ -+..+|.||+.+.+.++++.+|+.|+|.|.+. .+++.|
T Consensus 4 ~I~~vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~g~-~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~~G 82 (87)
T cd03694 4 QIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGS-FRPVTVKSIHRNRSPVRVVRAGQSASLALKKIDRSLLRKG 82 (87)
T ss_pred EEEeEEEcCCcceEEEEEEecCEEeCCCEEEECCCCCCC-EeEEEEEEEEECCeECCEECCCCEEEEEEcCCCHHHcCCc
Confidence 46688984 56888888999999999999998865 43 24689999999999999999999999999875 488999
Q ss_pred CEE
Q 001745 986 DII 988 (1018)
Q Consensus 986 D~i 988 (1018)
|+|
T Consensus 83 ~vl 85 (87)
T cd03694 83 MVL 85 (87)
T ss_pred cEE
Confidence 987
No 407
>PRK00049 elongation factor Tu; Reviewed
Probab=97.36 E-value=0.0086 Score=69.62 Aligned_cols=182 Identities=15% Similarity=0.176 Sum_probs=117.2
Q ss_pred CCCccHHHHHHHHHhCCCCCeEEEEEEcccC--CCCHhhHHHHHhcC-CE-EEEec-CCCC--hhHH--------hHHHh
Q 001745 808 DVQGSIEAVRQALQVLPQDNVTLKFLLQATG--DISASDVDLAVASK-AI-ILGFN-VKAP--GSVK--------TYADN 872 (1018)
Q Consensus 808 Dv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG--~ItesDV~lA~as~-ai-Ii~Fn-V~~~--~~a~--------~~A~~ 872 (1018)
|+-|-.+-+.+.+..+..-++-+-++.+.-| +-|+.=+.++...+ .. |+.+| +... .+.. ++...
T Consensus 81 DtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~ 160 (396)
T PRK00049 81 DCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSK 160 (396)
T ss_pred ECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHh
Confidence 8888766666666667666777777777654 23333345555544 33 34666 2221 1111 11111
Q ss_pred -----cCceEEEechH-----------hHHHHHHHHHHhcccc-cceeeeeeEeEEEEEEeec-CCceEEEEEEeeeeEe
Q 001745 873 -----KGVEIRLYRVI-----------YDLIDDMRNAMEGLLE-TVEEQVPIGSAEVRAIFSS-GSGRVAGCMVSEGKLV 934 (1018)
Q Consensus 873 -----~~V~I~~~~II-----------Y~Liddik~~~~~~l~-~~~~e~~~G~A~V~~vF~~-~~g~IaGc~V~~G~i~ 934 (1018)
..+.|..-+-. |+-++.+.+++...++ |.....---+.-|..+|+. +.|.|+..+|..|.|+
T Consensus 161 ~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~I~~~f~v~g~G~Vv~G~v~~G~i~ 240 (396)
T PRK00049 161 YDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIPTPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIIK 240 (396)
T ss_pred cCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCCceEEEEEEEeeeEEe
Confidence 12444432221 4445666667776654 3222111234567799984 6799999999999999
Q ss_pred eCCcEEEeeCCEEEEEEEEeeeecccccccccccCceeEEEEccC--CCCCCCCEEEE
Q 001745 935 KGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADY--DDLEEGDIIEA 990 (1018)
Q Consensus 935 ~~~~vrviR~g~vi~~G~i~SLk~~k~dV~ev~~G~EcGi~i~~f--~d~~~GD~ie~ 990 (1018)
.|..+.++=-+. -...+|.||+.+.++|.++.+|+-||+.+.+. .|++.||+|-.
T Consensus 241 ~gd~v~i~p~~~-~~~~~VksI~~~~~~~~~a~~Gd~v~l~l~~i~~~~i~~G~vl~~ 297 (396)
T PRK00049 241 VGEEVEIVGIRD-TQKTTVTGVEMFRKLLDEGQAGDNVGALLRGIKREDVERGQVLAK 297 (396)
T ss_pred cCCEEEEeecCC-CceEEEEEEEECCcEeCEEcCCCEEEEEeCCCCHHHCCcceEEec
Confidence 999998863211 13579999999999999999999999999986 58999999854
No 408
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.35 E-value=0.0011 Score=67.31 Aligned_cols=112 Identities=24% Similarity=0.283 Sum_probs=60.9
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCccc------ccccCCceee--------eeeEEEEE-------------ec-------
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVA------AAEAGGITQG--------IGAYKVQV-------------PV------- 537 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~------~~e~gGiTqd--------Iga~~V~i-------------~~------- 537 (1018)
|.+.++|..|+|||||++++...... ..+.+.+..+ ...+.+.. .+
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~~~~~~~~~~i~~~~G~~~~d~~~~~~~~~~v~~l~~GCiCC~~~~~l~~~l~~l~~~~ 80 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILTEQHGRKIAVIENEFGEVGIDNQLVVDTDEEIIEMNNGCICCTVRGDLIRALLDLLERL 80 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHhcccCCcEEEEecCCCccchhHHHHhCCCceEEEeCCCEeEeeCchhHHHHHHHHHHHH
Confidence 57899999999999999998754211 1111111100 01111110 00
Q ss_pred --CCceecEEEEeCCCccchHHHHH--------hhhccCCEEEEEEecCCCCCh--hHHHHHHHHHHcCCCEEEEEecCC
Q 001745 538 --DGKLQPCVFLDTPGHEAFGAMRA--------RGARVTDIAVIVVAADDGIRP--QTNEAIAHAKAAGVPIVIAINKID 605 (1018)
Q Consensus 538 --dgk~~~ItfIDTPGHE~F~~~r~--------rg~~~ADiVILVVDAddGv~~--QT~E~I~~ak~~gIPIIVVINKiD 605 (1018)
......+.|+||||-..-..+.. ...-..|.+++++|+...... .......++..++ +|++||+|
T Consensus 81 ~~~~~~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~ad---~ivlnk~d 157 (158)
T cd03112 81 DAGKIAFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFAD---RILLNKTD 157 (158)
T ss_pred HhccCCCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHCC---EEEEeccc
Confidence 01245689999999532222211 233557999999998753221 1122233444333 67999999
Q ss_pred C
Q 001745 606 K 606 (1018)
Q Consensus 606 L 606 (1018)
+
T Consensus 158 l 158 (158)
T cd03112 158 L 158 (158)
T ss_pred C
Confidence 6
No 409
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=97.34 E-value=0.0014 Score=59.82 Aligned_cols=75 Identities=21% Similarity=0.314 Sum_probs=64.3
Q ss_pred EEEEEeecC-CceEEEEEEeeeeEeeCCcEEEeeCCEEEEEEEEeeeecccccccccccCceeEEEEccCCCCCCCCEE
Q 001745 911 EVRAIFSSG-SGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDLEEGDII 988 (1018)
Q Consensus 911 ~V~~vF~~~-~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~i~SLk~~k~dV~ev~~G~EcGi~i~~f~d~~~GD~i 988 (1018)
-|..+|+.+ .+..+..+|..|.++.|..+.++-.+. ..+|.||+.+.+++.++.+|.-|||.+.+..+++.||+|
T Consensus 4 ~V~dv~k~~~~~~~v~Gkv~~G~v~~Gd~v~~~P~~~---~~~V~si~~~~~~~~~a~aGd~v~l~l~~~~~i~~G~vl 79 (81)
T cd03695 4 PVQYVIRPNADFRGYAGTIASGSIRVGDEVVVLPSGK---TSRVKSIETFDGELDEAGAGESVTLTLEDEIDVSRGDVI 79 (81)
T ss_pred eEEEEEeeCCCcEEEEEEEccceEECCCEEEEcCCCC---eEEEEEEEECCcEeCEEcCCCEEEEEECCccccCCCCEE
Confidence 466888743 444555699999999999999887663 579999999999999999999999999998899999987
No 410
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.33 E-value=0.00053 Score=77.43 Aligned_cols=87 Identities=25% Similarity=0.218 Sum_probs=68.0
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEec----------CC---ceecEEEEeCCCc-----
Q 001745 491 PPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPV----------DG---KLQPCVFLDTPGH----- 552 (1018)
Q Consensus 491 ~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~----------dg---k~~~ItfIDTPGH----- 552 (1018)
.++++|+|.||+|||||+|.|++........+..|++.....+.+.. .. ....++++|++|-
T Consensus 20 ~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs 99 (391)
T KOG1491|consen 20 NLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGAS 99 (391)
T ss_pred cceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCcc
Confidence 34899999999999999999999988888889999988776666531 11 2345999999982
Q ss_pred --cchHHHHHhhhccCCEEEEEEecCC
Q 001745 553 --EAFGAMRARGARVTDIAVIVVAADD 577 (1018)
Q Consensus 553 --E~F~~~r~rg~~~ADiVILVVDAdd 577 (1018)
+-...-....++.+|+++-|+++.+
T Consensus 100 ~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 100 AGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred cCcCchHHHHHhhhhccceeEEEEecC
Confidence 3344555566788999999998864
No 411
>PRK12289 GTPase RsgA; Reviewed
Probab=97.33 E-value=0.00037 Score=79.83 Aligned_cols=57 Identities=18% Similarity=0.388 Sum_probs=39.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCc-ccccccCC-------ceeeeeeEEEEEecCCceecEEEEeCCCccchH
Q 001745 493 VLTIMGHVDHGKTTLLDHIRKTK-VAAAEAGG-------ITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFG 556 (1018)
Q Consensus 493 kVaImGhvdvGKTTLLnrL~~~~-v~~~e~gG-------iTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~ 556 (1018)
.++|+|.+|+|||||+|+|.... ...++..+ +|++...+.+ .+. ..|+||||...|.
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l----~~g---~~liDTPG~~~~~ 238 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFEL----PNG---GLLADTPGFNQPD 238 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEEC----CCC---cEEEeCCCccccc
Confidence 58999999999999999998543 33444444 6777544432 222 3799999975543
No 412
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=97.30 E-value=0.0055 Score=75.14 Aligned_cols=180 Identities=15% Similarity=0.169 Sum_probs=117.1
Q ss_pred cCCCccHHHHHHHHHhCCCCCeEEEEEEcccC--CCCHhhHHHHHhcCC--EEEEecC-CC-Chh--------HHhHHHh
Q 001745 807 VDVQGSIEAVRQALQVLPQDNVTLKFLLQATG--DISASDVDLAVASKA--IILGFNV-KA-PGS--------VKTYADN 872 (1018)
Q Consensus 807 aDv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG--~ItesDV~lA~as~a--iIi~FnV-~~-~~~--------a~~~A~~ 872 (1018)
-|+-|.-.-+...+..+..-++-+-|+.+.-| +-|..-+.++...+- +|+.+|= .. +.+ ++++.+.
T Consensus 56 IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~ 135 (614)
T PRK10512 56 IDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVLRE 135 (614)
T ss_pred EECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHh
Confidence 58888765667777777776777777776655 334444455554442 4677773 22 221 2222222
Q ss_pred cC---ceEEEechHh-HHHHHHHHHHhcccccceeeeeeEeEEEEEEeec-CCceEEEEEEeeeeEeeCCcEEEeeCCEE
Q 001745 873 KG---VEIRLYRVIY-DLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSS-GSGRVAGCMVSEGKLVKGCGIRVIRDGKT 947 (1018)
Q Consensus 873 ~~---V~I~~~~IIY-~Liddik~~~~~~l~~~~~e~~~G~A~V~~vF~~-~~g~IaGc~V~~G~i~~~~~vrviR~g~v 947 (1018)
.+ +.|+.-+-.. .=++++.+++..+..+.....---..-|-.+|.. +.|+|..-.|.+|+|+.|..+.+.-.+.
T Consensus 136 ~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~~~~~~~~~~~rl~Id~vf~v~G~GtVvtGtv~sG~l~~Gd~v~i~p~~~- 214 (614)
T PRK10512 136 YGFAEAKLFVTAATEGRGIDALREHLLQLPEREHAAQHRFRLAIDRAFTVKGAGLVVTGTALSGEVKVGDTLWLTGVNK- 214 (614)
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhhccccCcCCCceEEEEEEeccCCCeEEEEEEEecceEecCCEEEEcCCCC-
Confidence 23 4554332111 1133444444444444322211124556789985 6899999999999999999998875553
Q ss_pred EEEEEEeeeecccccccccccCceeEEEEcc---CCCCCCCCEEE
Q 001745 948 VHVGVLDSLRRVKENVKEVNAGLECGVGAAD---YDDLEEGDIIE 989 (1018)
Q Consensus 948 i~~G~i~SLk~~k~dV~ev~~G~EcGi~i~~---f~d~~~GD~ie 989 (1018)
..+|.||+.+..+|.++.+|+-|||.+.+ ..+++.||+|-
T Consensus 215 --~~~VrsIq~~~~~v~~a~aG~rval~l~g~~~~~~i~rGdvl~ 257 (614)
T PRK10512 215 --PMRVRGLHAQNQPTEQAQAGQRIALNIAGDAEKEQINRGDWLL 257 (614)
T ss_pred --cEEEEEEecCCcCCCEEeCCCeEEEEecCCCChhhCCCcCEEe
Confidence 46899999999999999999999999985 35899999984
No 413
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.28 E-value=0.00056 Score=76.56 Aligned_cols=58 Identities=22% Similarity=0.407 Sum_probs=37.1
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCc-cc---ccccC----CceeeeeeEEEEEecCCceecEEEEeCCCccchH
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTK-VA---AAEAG----GITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFG 556 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~-v~---~~e~g----GiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~ 556 (1018)
...+++|++|+|||||+|+|.... .. .++.. -+|++...+. +.+. =.++||||...|.
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~----l~~g---G~iiDTPGf~~~~ 230 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFP----LPGG---GWIIDTPGFRSLG 230 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEE----cCCC---CEEEeCCCCCccC
Confidence 489999999999999999997432 11 11111 2455543333 3222 2799999966554
No 414
>PRK13796 GTPase YqeH; Provisional
Probab=97.23 E-value=0.00047 Score=79.26 Aligned_cols=55 Identities=27% Similarity=0.399 Sum_probs=40.8
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCc------ccccccCCceeeeeeEEEEEecCCceecEEEEeCCCc
Q 001745 491 PPVLTIMGHVDHGKTTLLDHIRKTK------VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH 552 (1018)
Q Consensus 491 ~pkVaImGhvdvGKTTLLnrL~~~~------v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGH 552 (1018)
...+.++|.+|+|||||+|+|.... ...+..+|+|++...+ .+++ ...++||||.
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~----~l~~---~~~l~DTPGi 220 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEI----PLDD---GSFLYDTPGI 220 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEE----EcCC---CcEEEECCCc
Confidence 4579999999999999999998532 2356778999875332 2332 2589999995
No 415
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.21 E-value=0.0049 Score=70.61 Aligned_cols=68 Identities=15% Similarity=0.129 Sum_probs=51.6
Q ss_pred ceecEEEEeCCCccchHHHHHhhhccCCEEEEEEecCC--------CCChhHHHHHHHHHH-------cCCCEEEEEecC
Q 001745 540 KLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADD--------GIRPQTNEAIAHAKA-------AGVPIVIAINKI 604 (1018)
Q Consensus 540 k~~~ItfIDTPGHE~F~~~r~rg~~~ADiVILVVDAdd--------Gv~~QT~E~I~~ak~-------~gIPIIVVINKi 604 (1018)
++..+.++|.+||..-+.-|...+..++++|+|++.++ .......|.+++... .+.++|+++||.
T Consensus 193 k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~ 272 (354)
T KOG0082|consen 193 KGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKK 272 (354)
T ss_pred CCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecH
Confidence 34679999999998888889999999999999999986 112222344433322 467899999999
Q ss_pred CCC
Q 001745 605 DKD 607 (1018)
Q Consensus 605 DL~ 607 (1018)
|+.
T Consensus 273 DLF 275 (354)
T KOG0082|consen 273 DLF 275 (354)
T ss_pred HHH
Confidence 983
No 416
>PRK13796 GTPase YqeH; Provisional
Probab=97.21 E-value=0.0019 Score=74.38 Aligned_cols=93 Identities=28% Similarity=0.287 Sum_probs=59.2
Q ss_pred cchHHHHHhhhccCC-EEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCC--ChHHHHHHHH----hcCCCC
Q 001745 553 EAFGAMRARGARVTD-IAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGA--NPERVMQELS----SIGLMP 625 (1018)
Q Consensus 553 E~F~~~r~rg~~~AD-iVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a--~~erv~~eL~----e~gl~~ 625 (1018)
+.|.... ..+...| ++++|+|+.|....+..+..++. .+.|+++|+||+|+... +.+++...+. ..++.
T Consensus 57 ~~~~~~l-~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~--~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~- 132 (365)
T PRK13796 57 DDFLKLL-NGIGDSDALVVNVVDIFDFNGSWIPGLHRFV--GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLR- 132 (365)
T ss_pred HHHHHHH-HhhcccCcEEEEEEECccCCCchhHHHHHHh--CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCC-
Confidence 3565543 4444455 99999999885443333322222 37899999999999532 2333333322 22321
Q ss_pred CCCCCCCcEEEEecCCCCChHHHHHHHHH
Q 001745 626 EDWGGDIPMVQISALKGEKVDDLLETIML 654 (1018)
Q Consensus 626 e~~g~~vpiVeISAktGeGIdeLleaIl~ 654 (1018)
...++.+||++|.|+++|++.|..
T Consensus 133 -----~~~v~~vSAk~g~gI~eL~~~I~~ 156 (365)
T PRK13796 133 -----PVDVVLISAQKGHGIDELLEAIEK 156 (365)
T ss_pred -----cCcEEEEECCCCCCHHHHHHHHHH
Confidence 125899999999999999999854
No 417
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=97.20 E-value=0.0014 Score=59.63 Aligned_cols=61 Identities=23% Similarity=0.309 Sum_probs=50.6
Q ss_pred CcceEEEEeeecCCCcEEEEEeEeeEEecCCEEEEcc--ceeEEEEEeccCCCcccccCCCccEEE
Q 001745 669 AKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE--AFGKVRALFDDSGNRVDEAGPSIPVQI 732 (1018)
Q Consensus 669 ~~g~ViEs~~dkg~G~VatglV~~GtLkvGD~Vv~G~--~~gKVRaI~~~~g~~V~eA~pg~~V~V 732 (1018)
+...|.+++.. .|++++|+|.+|+|++||.+.+.+ ...+|++|+.+ ++.+++|.||+.|.+
T Consensus 2 lr~~I~~v~~~--~g~vv~G~v~~G~i~~G~~v~i~P~~~~~~V~si~~~-~~~~~~a~aGd~v~l 64 (82)
T cd04089 2 LRLPIIDKYKD--MGTVVLGKVESGTIKKGDKLLVMPNKTQVEVLSIYNE-DVEVRYARPGENVRL 64 (82)
T ss_pred eEEEEEeEEEc--CCEEEEEEEeeeEEecCCEEEEeCCCcEEEEEEEEEC-CEECCEECCCCEEEE
Confidence 34455566543 489999999999999999999976 47899999887 688999999999976
No 418
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=97.19 E-value=0.0009 Score=61.63 Aligned_cols=62 Identities=23% Similarity=0.147 Sum_probs=52.3
Q ss_pred ceEEEEeeecCCCcEEEEEeEeeEEecCCEEEEcc----ceeEEEEEeccCCCcccccCCCccEEEe
Q 001745 671 GTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE----AFGKVRALFDDSGNRVDEAGPSIPVQII 733 (1018)
Q Consensus 671 g~ViEs~~dkg~G~VatglV~~GtLkvGD~Vv~G~----~~gKVRaI~~~~g~~V~eA~pg~~V~V~ 733 (1018)
..|.+++..++.|++++|+|.+|++++||.+.+.+ ...+|++|+.+ ++.+++|.||+.|.+.
T Consensus 3 ~~V~~v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~~~~~~~~V~si~~~-~~~~~~a~~G~~v~l~ 68 (87)
T cd03697 3 MPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGETLKTTVTGIEMF-RKTLDEAEAGDNVGVL 68 (87)
T ss_pred eeEEEEEeCCCcEEEEEEEECCCCCccCCEEEEeCCCCCceEEEEEEEEC-CcCCCEECCCCEEEEE
Confidence 45666676688999999999999999999998743 46789999877 7889999999999753
No 419
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=97.18 E-value=0.0023 Score=58.04 Aligned_cols=73 Identities=26% Similarity=0.353 Sum_probs=57.4
Q ss_pred cceEEEEeeecCCCcEEEEEeEeeEEecCCEEEEcc--ceeEEEEEeccC---CCcccccCCCccEEEeccCCCCCCCCe
Q 001745 670 KGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE--AFGKVRALFDDS---GNRVDEAGPSIPVQIIGLNGVPIAGDE 744 (1018)
Q Consensus 670 ~g~ViEs~~dkg~G~VatglV~~GtLkvGD~Vv~G~--~~gKVRaI~~~~---g~~V~eA~pg~~V~V~Gl~~vP~aGd~ 744 (1018)
.+.|+.+..++. |.++.++|.+|+|++||.|..-. ...+|..|+... ..+++++.||+.+.+.|++ + ..||.
T Consensus 2 ~a~vfK~~~~~~-G~i~~~Rv~sG~lk~gd~v~~~~~~~~~~v~~i~~~~g~~~~~~~~~~aGdI~~i~g~~-~-~~Gdt 78 (81)
T cd04091 2 VGLAFKLEEGRF-GQLTYMRIYQGKLKKGDTIYNVRTGKKVRVPRLVRMHSNEMEEVEEAGAGDICAIFGID-C-ASGDT 78 (81)
T ss_pred eEEEEEeecCCC-CCEEEEEEecCEEcCCCEEEEcCCCCEEEEeEEEEEeCCCceEccEECCCCEEEEECCC-c-ccCCE
Confidence 467888888865 99999999999999999997633 234555554433 4568999999999999996 4 68887
Q ss_pred E
Q 001745 745 F 745 (1018)
Q Consensus 745 ~ 745 (1018)
+
T Consensus 79 l 79 (81)
T cd04091 79 F 79 (81)
T ss_pred e
Confidence 6
No 420
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=97.17 E-value=0.00034 Score=61.65 Aligned_cols=63 Identities=40% Similarity=0.461 Sum_probs=52.4
Q ss_pred CcEEEEEeEeeEEecCCEEEE--cc--c---eeEEEEEeccCC---CcccccCCCccEEEeccCCCCCCCCeE
Q 001745 683 GPVATFILQNGTLKKGDVVVC--GE--A---FGKVRALFDDSG---NRVDEAGPSIPVQIIGLNGVPIAGDEF 745 (1018)
Q Consensus 683 G~VatglV~~GtLkvGD~Vv~--G~--~---~gKVRaI~~~~g---~~V~eA~pg~~V~V~Gl~~vP~aGd~~ 745 (1018)
|++++++|++|+|++||.|++ .. . ..+|++|+.+++ ..+..+.+|+.+.+.++++.+..||.|
T Consensus 1 G~v~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~i~~Gdtl 73 (74)
T PF03144_consen 1 GRVATGRVYSGTLKKGDKVRVLPNGTGKKGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGLNDAIRRGDTL 73 (74)
T ss_dssp EEEEEEEEEESEEETTEEEEEESTTTTEECEEEEEEEEEETTEEESEEETTEEEEEEEESSSGCSCSSTTEEE
T ss_pred CEEEEEEEEEeEEcCCCEEEECccCCcceeeeeecccccccccCccEeCCceeeEEEEEEcCCCCCcCcCCEE
Confidence 689999999999999999998 32 2 389999999876 457778888888888999844899876
No 421
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=97.16 E-value=0.011 Score=70.02 Aligned_cols=181 Identities=17% Similarity=0.223 Sum_probs=126.7
Q ss_pred cCCCccHHHHHHHHHhCCCCCeEEEEEEcccC---------CCCHhhHHHHHhcC--CEEEEec-CCC-C----------
Q 001745 807 VDVQGSIEAVRQALQVLPQDNVTLKFLLQATG---------DISASDVDLAVASK--AIILGFN-VKA-P---------- 863 (1018)
Q Consensus 807 aDv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG---------~ItesDV~lA~as~--aiIi~Fn-V~~-~---------- 863 (1018)
-|+-|..+=+.+.+..+..-++-+-|+.+.-| +-|..-+.+|...+ .+|++.| +.. .
T Consensus 90 IDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~~~~~~~~ 169 (446)
T PTZ00141 90 IDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNYSQERYDE 169 (446)
T ss_pred EECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccchhhHHHHHH
Confidence 58889877788888888878888888888766 45667777777766 3678888 331 1
Q ss_pred --hhHHhHHHhcC-----ceEEEech-----HhHH--------HHHHHHHHhcccccceeeeeeEeEEEEEEeec-CCce
Q 001745 864 --GSVKTYADNKG-----VEIRLYRV-----IYDL--------IDDMRNAMEGLLETVEEQVPIGSAEVRAIFSS-GSGR 922 (1018)
Q Consensus 864 --~~a~~~A~~~~-----V~I~~~~I-----IY~L--------iddik~~~~~~l~~~~~e~~~G~A~V~~vF~~-~~g~ 922 (1018)
.+++++..+.| +.|+.-+- |.+. -..+.+++..+..|.....---+.-|..+|+. +.|.
T Consensus 170 i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l~~~~~~~~~~~~p~r~~I~~v~~v~g~Gt 249 (446)
T PTZ00141 170 IKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEALDTLEPPKRPVDKPLRLPLQDVYKIGGIGT 249 (446)
T ss_pred HHHHHHHHHHhcCCCcccceEEEeecccCCCcccCCCCCcccchHHHHHHHhCCCCCCcCCCCCeEEEEEEEEecCCceE
Confidence 12222223333 44443331 1110 01344455555444433222234667799984 5799
Q ss_pred EEEEEEeeeeEeeCCcEEEeeCCEEEEEEEEeeeecccccccccccCceeEEEEccC--CCCCCCCEEEE
Q 001745 923 VAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADY--DDLEEGDIIEA 990 (1018)
Q Consensus 923 IaGc~V~~G~i~~~~~vrviR~g~vi~~G~i~SLk~~k~dV~ev~~G~EcGi~i~~f--~d~~~GD~ie~ 990 (1018)
|+..+|..|.|+.|..+.++-.+. ..+|.||+.+.+++.++.+|+-|||.|.+. .+++.||+|-.
T Consensus 250 vv~G~V~~G~l~~Gd~v~i~P~~~---~~~VksI~~~~~~~~~a~aG~~v~i~L~~i~~~~v~rG~vl~~ 316 (446)
T PTZ00141 250 VPVGRVETGILKPGMVVTFAPSGV---TTEVKSVEMHHEQLAEAVPGDNVGFNVKNVSVKDIKRGYVASD 316 (446)
T ss_pred EEEEEEEcceEecCCEEEEccCCc---EEEEEEEEecCcccCEECCCCEEEEEECCCCHHHcCCceEEec
Confidence 999999999999999999998774 478999999999999999999999999985 58999999854
No 422
>PRK12288 GTPase RsgA; Reviewed
Probab=97.13 E-value=0.00051 Score=78.57 Aligned_cols=57 Identities=19% Similarity=0.388 Sum_probs=37.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHcCcc-cccccCC-------ceeeeeeEEEEEecCCceecEEEEeCCCccchH
Q 001745 493 VLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGG-------ITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFG 556 (1018)
Q Consensus 493 kVaImGhvdvGKTTLLnrL~~~~v-~~~e~gG-------iTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~ 556 (1018)
.++|+|.+|+|||||+|+|..... ..++..+ +|.+...+.+ .+. ..++||||...|.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l----~~~---~~liDTPGir~~~ 271 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHF----PHG---GDLIDSPGVREFG 271 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEe----cCC---CEEEECCCCCccc
Confidence 489999999999999999986532 2333222 4555433333 222 3599999976654
No 423
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.13 E-value=0.0036 Score=73.80 Aligned_cols=146 Identities=25% Similarity=0.307 Sum_probs=78.9
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHc----C--cccc--cccCCc-----------eeeeeeEEEEEec-----------C
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRK----T--KVAA--AEAGGI-----------TQGIGAYKVQVPV-----------D 538 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~----~--~v~~--~e~gGi-----------TqdIga~~V~i~~-----------d 538 (1018)
.+|.+|+++|.+|+||||++..|.. . ++.. .+.... ..++.++...... .
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 4577899999999999999987742 1 1110 000000 0011111110000 0
Q ss_pred CceecEEEEeCCCccchHHHH------HhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCC-EEEEEecCCCCCCCh
Q 001745 539 GKLQPCVFLDTPGHEAFGAMR------ARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGANP 611 (1018)
Q Consensus 539 gk~~~ItfIDTPGHE~F~~~r------~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIP-IIVVINKiDL~~a~~ 611 (1018)
...+.+.|+||||...+.... ...+..+|.++||+|++.+ .+..+.+..... .++ .-+++||+|-. ...
T Consensus 173 ~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~g--q~av~~a~~F~~-~l~i~gvIlTKlD~~-a~~ 248 (437)
T PRK00771 173 FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIG--QQAKNQAKAFHE-AVGIGGIIITKLDGT-AKG 248 (437)
T ss_pred hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEecccc--HHHHHHHHHHHh-cCCCCEEEEecccCC-Ccc
Confidence 022479999999965443221 1224568999999999775 233333333221 244 35778999973 233
Q ss_pred HHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCChHHHH
Q 001745 612 ERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLL 649 (1018)
Q Consensus 612 erv~~eL~e~gl~~e~~g~~vpiVeISAktGeGIdeLl 649 (1018)
-.+.......+ .|+.+++ +|+++++|.
T Consensus 249 G~~ls~~~~~~---------~Pi~fig--~Ge~v~Dle 275 (437)
T PRK00771 249 GGALSAVAETG---------APIKFIG--TGEKIDDLE 275 (437)
T ss_pred cHHHHHHHHHC---------cCEEEEe--cCCCcccCC
Confidence 44444444443 4666664 478886553
No 424
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=97.09 E-value=0.0016 Score=60.03 Aligned_cols=78 Identities=21% Similarity=0.390 Sum_probs=64.6
Q ss_pred EEEEEeec-CCceEEEEEEeeeeEeeCCcEEEeeCCEEEEEEEEeeeecccccccccccCceeEEEEccC--CCCCCCCE
Q 001745 911 EVRAIFSS-GSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADY--DDLEEGDI 987 (1018)
Q Consensus 911 ~V~~vF~~-~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~i~SLk~~k~dV~ev~~G~EcGi~i~~f--~d~~~GD~ 987 (1018)
-|..+|+. ..|.|.-.+|..|.++.|..++++--+. -...+|.||..+.+++.++.+|+.|||.|++. .++..||+
T Consensus 4 ~V~~v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~~~-~~~~~V~si~~~~~~~~~a~~G~~v~l~l~~~~~~~v~rG~v 82 (87)
T cd03697 4 PIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGE-TLKTTVTGIEMFRKTLDEAEAGDNVGVLLRGVKREDVERGMV 82 (87)
T ss_pred eEEEEEeCCCcEEEEEEEECCCCCccCCEEEEeCCCC-CceEEEEEEEECCcCCCEECCCCEEEEEECCCCHHHcCCccE
Confidence 35688884 5677777799999999999999875321 14688999999999999999999999999976 58999998
Q ss_pred EE
Q 001745 988 IE 989 (1018)
Q Consensus 988 ie 989 (1018)
|-
T Consensus 83 l~ 84 (87)
T cd03697 83 LA 84 (87)
T ss_pred Ee
Confidence 73
No 425
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=97.09 E-value=0.0023 Score=58.47 Aligned_cols=61 Identities=20% Similarity=0.139 Sum_probs=51.2
Q ss_pred ceEEEEeeecCCCcEEEEEeEeeEEecCCEEEEcc--ceeEEEEEeccCCCcccccCCCccEEE
Q 001745 671 GTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE--AFGKVRALFDDSGNRVDEAGPSIPVQI 732 (1018)
Q Consensus 671 g~ViEs~~dkg~G~VatglV~~GtLkvGD~Vv~G~--~~gKVRaI~~~~g~~V~eA~pg~~V~V 732 (1018)
..|.+++...+.|..++|.|.+|++++||.+.+.+ ...+|++|+.+ ++.++.|.||+.|.+
T Consensus 3 ~~V~dv~k~~~~~~~v~Gkv~~G~v~~Gd~v~~~P~~~~~~V~si~~~-~~~~~~a~aGd~v~l 65 (81)
T cd03695 3 FPVQYVIRPNADFRGYAGTIASGSIRVGDEVVVLPSGKTSRVKSIETF-DGELDEAGAGESVTL 65 (81)
T ss_pred eeEEEEEeeCCCcEEEEEEEccceEECCCEEEEcCCCCeEEEEEEEEC-CcEeCEEcCCCEEEE
Confidence 34566665566777899999999999999999865 47899999987 788999999999976
No 426
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.07 E-value=0.0019 Score=65.18 Aligned_cols=58 Identities=21% Similarity=0.235 Sum_probs=37.5
Q ss_pred eecEEEEeCCCccchHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCC
Q 001745 541 LQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKID 605 (1018)
Q Consensus 541 ~~~ItfIDTPGHE~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiD 605 (1018)
++.+.|+||||.... ....+..+|.+|+|...+- ...+.. ........-=++++||+|
T Consensus 91 ~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~---~D~y~~-~k~~~~~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQS---EVDIASMADTTVVVMAPGA---GDDIQA-IKAGIMEIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChh---hhhHHHhCCEEEEEECCCc---hhHHHH-hhhhHhhhcCEEEEeCCC
Confidence 568999999995432 2347789999999986651 111222 222223444689999998
No 427
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=97.03 E-value=0.025 Score=67.32 Aligned_cols=183 Identities=17% Similarity=0.136 Sum_probs=119.4
Q ss_pred cCCCccHHHHHHHHHhCCCCCeEEEEEEcccC---CCCHhhHHHHHhcC--CEEEEec-CCCC-hh-HHh---HHHh---
Q 001745 807 VDVQGSIEAVRQALQVLPQDNVTLKFLLQATG---DISASDVDLAVASK--AIILGFN-VKAP-GS-VKT---YADN--- 872 (1018)
Q Consensus 807 aDv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG---~ItesDV~lA~as~--aiIi~Fn-V~~~-~~-a~~---~A~~--- 872 (1018)
.|+-|--.-+.+.+..+..-+.-+-|+.+.-| +-|.....+|...+ -+|+.+| +... .+ +.+ ..++
T Consensus 122 IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~~~~~~~~~~ei~~~l~ 201 (460)
T PTZ00327 122 VDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVKEAQAQDQYEEIRNFVK 201 (460)
T ss_pred eeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccCHHHHHHHHHHHHHHHH
Confidence 68888766677777777777777778887644 34555565555544 3678888 3322 11 111 1111
Q ss_pred ----cCceEEEechHhH-HHHHHHHHHhcccccceee-eeeEeEEEEEEeecC---------CceEEEEEEeeeeEeeCC
Q 001745 873 ----KGVEIRLYRVIYD-LIDDMRNAMEGLLETVEEQ-VPIGSAEVRAIFSSG---------SGRVAGCMVSEGKLVKGC 937 (1018)
Q Consensus 873 ----~~V~I~~~~IIY~-Liddik~~~~~~l~~~~~e-~~~G~A~V~~vF~~~---------~g~IaGc~V~~G~i~~~~ 937 (1018)
.++.|+.-+-... =++.+.++|.+.+++..+. .---+.-|-.+|... .|.|+..+|.+|.|+.|.
T Consensus 202 ~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~~r~~~~p~r~~Idr~F~V~~~g~~~~~~~GtVv~G~v~~G~l~~Gd 281 (460)
T PTZ00327 202 GTIADNAPIIPISAQLKYNIDVVLEYICTQIPIPKRDLTSPPRMIVIRSFDVNKPGEDIENLKGGVAGGSILQGVLKVGD 281 (460)
T ss_pred hhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCCCCCCCCCcEEEEEEEEeecccCCcccCCceEEEEEEEeeceEecCC
Confidence 2455555443221 1466666777655543222 111234466777642 588999999999999999
Q ss_pred cEEEee-------CCEEEE---EEEEeeeecccccccccccCceeEEEEc---cC--CCCCCCCEEE
Q 001745 938 GIRVIR-------DGKTVH---VGVLDSLRRVKENVKEVNAGLECGVGAA---DY--DDLEEGDIIE 989 (1018)
Q Consensus 938 ~vrviR-------~g~vi~---~G~i~SLk~~k~dV~ev~~G~EcGi~i~---~f--~d~~~GD~ie 989 (1018)
.+.+.- +|+..+ ..+|.||+.+..+|.++.+|+-|||.+. +. .|++-||+|-
T Consensus 282 ~v~i~P~~~~~~~~g~~~~~~~~~~VksI~~~~~~v~~a~aG~~vai~l~ld~~v~~~dv~rG~Vl~ 348 (460)
T PTZ00327 282 EIEIRPGIISKDSGGEFTCRPIRTRIVSLFAENNELQYAVPGGLIGVGTTIDPTLTRADRLVGQVLG 348 (460)
T ss_pred EEEEccCcccccccCccccccceEEEEEEEECCeECCEEcCCCEEEEEeccCCCcchhhcccccEEE
Confidence 998884 344332 4799999999999999999999999986 32 4788898874
No 428
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=97.02 E-value=0.0051 Score=52.84 Aligned_cols=73 Identities=37% Similarity=0.397 Sum_probs=58.1
Q ss_pred cceEEEEeeecCCCcEEEEEeEeeEEecCCEEEEcc----ceeEEEEEeccCCCcccccCCCccEEEeccCC--CCCCCC
Q 001745 670 KGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE----AFGKVRALFDDSGNRVDEAGPSIPVQIIGLNG--VPIAGD 743 (1018)
Q Consensus 670 ~g~ViEs~~dkg~G~VatglV~~GtLkvGD~Vv~G~----~~gKVRaI~~~~g~~V~eA~pg~~V~V~Gl~~--vP~aGd 743 (1018)
...|.+++.+.+.|.+++++|.+|+|++||.+.+.+ ...+|+.|+..+ ..++++.||+.+.+.+... + ..|+
T Consensus 2 ~~~v~~~~~~~~~g~v~~~rv~~G~l~~g~~v~~~~~~~~~~~~i~~i~~~~-~~~~~~~aG~~~~~~~~~~~~~-~~g~ 79 (83)
T cd01342 2 RALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLKRFK-GEVDEAVAGDIVGIVLKDKDDI-KIGD 79 (83)
T ss_pred eeEEEEEEEeCCceEEEEEEEeeCEEecCCEEEEecCCceeEEEEeEeEecC-ceeceecCCCEEEEEEcccccc-CCCC
Confidence 356777787888999999999999999999998854 357899998774 7789999999998877543 2 3555
Q ss_pred e
Q 001745 744 E 744 (1018)
Q Consensus 744 ~ 744 (1018)
.
T Consensus 80 ~ 80 (83)
T cd01342 80 T 80 (83)
T ss_pred E
Confidence 4
No 429
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=96.97 E-value=0.0044 Score=56.92 Aligned_cols=75 Identities=23% Similarity=0.231 Sum_probs=56.6
Q ss_pred cceEEEEeeecCCCcEEEEEeEeeEEecCCEEEEc--cceeEEEEEec--cCCCcccccCCCccEEEe-c---cCCCCCC
Q 001745 670 KGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCG--EAFGKVRALFD--DSGNRVDEAGPSIPVQII-G---LNGVPIA 741 (1018)
Q Consensus 670 ~g~ViEs~~dkg~G~VatglV~~GtLkvGD~Vv~G--~~~gKVRaI~~--~~g~~V~eA~pg~~V~V~-G---l~~vP~a 741 (1018)
.+.|+.+..++..|.++.++|.+|+|+.||.|..- ....+|..|+. .+..+++++.+|+.+.+. | ++++ ..
T Consensus 2 ~~~Vfk~~~d~~~G~i~~~Rv~sG~l~~~~~v~~~~~~~~~~i~~l~~~~~~~~~~~~~~aGdI~~v~~g~~~l~~~-~~ 80 (86)
T cd03699 2 RALIFDSWYDPYRGVIALVRVFDGTLKKGDKIRFMSTGKEYEVEEVGIFRPEMTPTDELSAGQVGYIIAGIKTVKDA-RV 80 (86)
T ss_pred EEEEEEeeccCCCCEEEEEEEEcCEEcCCCEEEEecCCCeEEEEEEEEECCCccCCceECCCCEEEEEccccccCcc-cc
Confidence 46788888899999999999999999999999652 22344444443 334578999999999986 5 4444 57
Q ss_pred CCeE
Q 001745 742 GDEF 745 (1018)
Q Consensus 742 Gd~~ 745 (1018)
||.+
T Consensus 81 Gdtl 84 (86)
T cd03699 81 GDTI 84 (86)
T ss_pred ccEe
Confidence 8765
No 430
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=96.96 E-value=0.0095 Score=70.50 Aligned_cols=134 Identities=21% Similarity=0.358 Sum_probs=86.7
Q ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHcCcccccc----------------------------------------------
Q 001745 487 LEDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAE---------------------------------------------- 520 (1018)
Q Consensus 487 l~~r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e---------------------------------------------- 520 (1018)
....-|+|+++|+-.+||||.|..+...++...-
T Consensus 304 t~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~ 383 (980)
T KOG0447|consen 304 TQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEI 383 (980)
T ss_pred ccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHH
Confidence 3456789999999999999999998654432110
Q ss_pred --------cCCceeeeeeEEEEEecCC-ceecEEEEeCCCc-------------cchHHHHHhhhccCCEEEEEEecCCC
Q 001745 521 --------AGGITQGIGAYKVQVPVDG-KLQPCVFLDTPGH-------------EAFGAMRARGARVTDIAVIVVAADDG 578 (1018)
Q Consensus 521 --------~gGiTqdIga~~V~i~~dg-k~~~ItfIDTPGH-------------E~F~~~r~rg~~~ADiVILVVDAddG 578 (1018)
.+|.|..- ..+.+.+.| +-.++.++|.||. +....|...++.+.+++|||+- ||
T Consensus 384 E~RMr~sVr~GkTVSn--EvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQ--DG 459 (980)
T KOG0447|consen 384 ELRMRKNVKEGCTVSP--ETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQ--DG 459 (980)
T ss_pred HHHHHhcccCCccccc--ceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEec--cC
Confidence 01222211 112222222 2246889999992 4455677788899999999984 22
Q ss_pred CC----hhHHHHHHHHHHcCCCEEEEEecCCCCC---CChHHHHHHHHhcCCC
Q 001745 579 IR----PQTNEAIAHAKAAGVPIVIAINKIDKDG---ANPERVMQELSSIGLM 624 (1018)
Q Consensus 579 v~----~QT~E~I~~ak~~gIPIIVVINKiDL~~---a~~erv~~eL~e~gl~ 624 (1018)
.- ...-.....+...+...|+|++|.|+.. ++++++.+.+...-+.
T Consensus 460 SVDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleGKLFP 512 (980)
T KOG0447|consen 460 SVDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEGKLFP 512 (980)
T ss_pred CcchhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhcCccc
Confidence 21 1223334445556777999999999954 5789998888765443
No 431
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=96.95 E-value=0.00089 Score=72.90 Aligned_cols=56 Identities=20% Similarity=0.409 Sum_probs=37.2
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCccc-cccc-------CCceeeeeeEEEEEecCCceecEEEEeCCCccch
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVA-AAEA-------GGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAF 555 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~-~~e~-------gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F 555 (1018)
..++++|++|+|||||+|+|...... .++. ..+|++...+.+ .+ ..++||||...|
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l----~~----~~liDtPG~~~~ 184 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF----HG----GLIADTPGFNEF 184 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc----CC----cEEEeCCCcccc
Confidence 47999999999999999999864321 1111 236666444332 22 379999995443
No 432
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.95 E-value=0.0066 Score=61.75 Aligned_cols=65 Identities=22% Similarity=0.251 Sum_probs=39.0
Q ss_pred eecEEEEeCCCccchHHHH----Hhh--hccCCEEEEEEecCCCCChhHHHHHH-HHHHcCCCEEEEEecCCCCC
Q 001745 541 LQPCVFLDTPGHEAFGAMR----ARG--ARVTDIAVIVVAADDGIRPQTNEAIA-HAKAAGVPIVIAINKIDKDG 608 (1018)
Q Consensus 541 ~~~ItfIDTPGHE~F~~~r----~rg--~~~ADiVILVVDAddGv~~QT~E~I~-~ak~~gIPIIVVINKiDL~~ 608 (1018)
++.+.|+||||...+.... ... ....|.++||+|+..+ ....+.+. +....++ .-+++||+|...
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~--~~~~~~~~~~~~~~~~-~~viltk~D~~~ 153 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTG--QDAVNQAKAFNEALGI-TGVILTKLDGDA 153 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--hHHHHHHHHHHhhCCC-CEEEEECCcCCC
Confidence 4568999999975332111 111 1348999999998642 33333333 3333453 567779999853
No 433
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=96.94 E-value=0.028 Score=65.85 Aligned_cols=183 Identities=20% Similarity=0.166 Sum_probs=114.4
Q ss_pred cCCCccHHHHHHHHHhCCCCCeEEEEEEcccCC---CCHhhHHHHHhcC--CEEEEec-CCCCh---------hHHhHHH
Q 001745 807 VDVQGSIEAVRQALQVLPQDNVTLKFLLQATGD---ISASDVDLAVASK--AIILGFN-VKAPG---------SVKTYAD 871 (1018)
Q Consensus 807 aDv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG~---ItesDV~lA~as~--aiIi~Fn-V~~~~---------~a~~~A~ 871 (1018)
-|+-|..+=+.+.+..+..-++-+-|+.+.-|. -+...+..+...+ .+|+.+| +.... .++.+++
T Consensus 90 iDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~~~~~~~~~i~~~l~ 169 (411)
T PRK04000 90 VDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKERALENYEQIKEFVK 169 (411)
T ss_pred EECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccchhHHHHHHHHHHHhc
Confidence 489998777777777776667777788777553 2334444444443 4778777 22211 1122222
Q ss_pred h---cCceEEEechHh-HHHHHHHHHHhcccccceee-eeeEeEEEEEEeecC---------CceEEEEEEeeeeEeeCC
Q 001745 872 N---KGVEIRLYRVIY-DLIDDMRNAMEGLLETVEEQ-VPIGSAEVRAIFSSG---------SGRVAGCMVSEGKLVKGC 937 (1018)
Q Consensus 872 ~---~~V~I~~~~IIY-~Liddik~~~~~~l~~~~~e-~~~G~A~V~~vF~~~---------~g~IaGc~V~~G~i~~~~ 937 (1018)
. .++.++.-+-.. +=++++.+++...+++..+. .---..-|..+|..+ .|.|..-+|..|.++.|.
T Consensus 170 ~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~~~~~~~~~r~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~l~~gd 249 (411)
T PRK04000 170 GTVAENAPIIPVSALHKVNIDALIEAIEEEIPTPERDLDKPPRMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGVLKVGD 249 (411)
T ss_pred cccCCCCeEEEEECCCCcCHHHHHHHHHHhCCCCCCCCCCCceEEEEeeeeecCCCccccCCcceEEEEEEEeCEEecCC
Confidence 1 245555433211 11344455555544432211 112245677888531 355777799999999999
Q ss_pred cEEEeeCCE------EEE---EEEEeeeecccccccccccCceeEEEEc---c--CCCCCCCCEEE
Q 001745 938 GIRVIRDGK------TVH---VGVLDSLRRVKENVKEVNAGLECGVGAA---D--YDDLEEGDIIE 989 (1018)
Q Consensus 938 ~vrviR~g~------vi~---~G~i~SLk~~k~dV~ev~~G~EcGi~i~---~--f~d~~~GD~ie 989 (1018)
.+.++-.+. -.| ..+|.||+.+.+++.++.+|+-|||.+. + -.|+..||+|-
T Consensus 250 ~v~i~P~~~~~~~~~~~~~~~~~~VksI~~~~~~~~~a~~G~~v~i~l~~~~~i~~~~i~~G~vl~ 315 (411)
T PRK04000 250 EIEIRPGIKVEEGGKTKWEPITTKIVSLRAGGEKVEEARPGGLVGVGTKLDPSLTKADALAGSVAG 315 (411)
T ss_pred EEEEcCCcceecccccccccceEEEeEEEECCEECCEEcCCCEEEEEeccCCCCCHHHccCccEEE
Confidence 999986543 122 4689999999999999999999999985 3 25788898873
No 434
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.92 E-value=0.02 Score=68.48 Aligned_cols=146 Identities=21% Similarity=0.262 Sum_probs=74.7
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCccc-cc--ccCCceee------------------eeeEEEEEe-------cCCc
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVA-AA--EAGGITQG------------------IGAYKVQVP-------VDGK 540 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~~v~-~~--e~gGiTqd------------------Iga~~V~i~-------~dgk 540 (1018)
.++.+++++|..|+||||++..|...... .+ ..+-++.| +..+..... .+-.
T Consensus 254 ~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~ 333 (484)
T PRK06995 254 DRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELR 333 (484)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhcc
Confidence 45679999999999999999988632100 00 00001111 001000000 0112
Q ss_pred eecEEEEeCCCccchHHHHHh---hhcc---CCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHH
Q 001745 541 LQPCVFLDTPGHEAFGAMRAR---GARV---TDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERV 614 (1018)
Q Consensus 541 ~~~ItfIDTPGHE~F~~~r~r---g~~~---ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv 614 (1018)
++.+.+|||+|.......... .+.. ..-.+||+|+.-+. ....+.+......++ --+++||+|-. ...-.+
T Consensus 334 d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~-~~l~~i~~~f~~~~~-~g~IlTKlDet-~~~G~~ 410 (484)
T PRK06995 334 NKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG-DTLNEVVQAYRGPGL-AGCILTKLDEA-ASLGGA 410 (484)
T ss_pred CCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH-HHHHHHHHHhccCCC-CEEEEeCCCCc-ccchHH
Confidence 356899999994332211111 1111 23378999887432 112233333333333 34567999964 344556
Q ss_pred HHHHHhcCCCCCCCCCCCcEEEEecCCCCCh-HHH
Q 001745 615 MQELSSIGLMPEDWGGDIPMVQISALKGEKV-DDL 648 (1018)
Q Consensus 615 ~~eL~e~gl~~e~~g~~vpiVeISAktGeGI-deL 648 (1018)
.......+ .|+..++ +|++| ++|
T Consensus 411 l~i~~~~~---------lPI~yvt--~GQ~VPeDL 434 (484)
T PRK06995 411 LDVVIRYK---------LPLHYVS--NGQRVPEDL 434 (484)
T ss_pred HHHHHHHC---------CCeEEEe--cCCCChhhh
Confidence 66555554 4555553 68888 554
No 435
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.89 E-value=0.0022 Score=67.73 Aligned_cols=92 Identities=26% Similarity=0.362 Sum_probs=53.7
Q ss_pred ecEEEEeCCCccchHHH----HHhh--hccCCEEEEEEecCCCCChhHH-HHHHHHHHcCCCEEEEEecCCCCCCChHHH
Q 001745 542 QPCVFLDTPGHEAFGAM----RARG--ARVTDIAVIVVAADDGIRPQTN-EAIAHAKAAGVPIVIAINKIDKDGANPERV 614 (1018)
Q Consensus 542 ~~ItfIDTPGHE~F~~~----r~rg--~~~ADiVILVVDAddGv~~QT~-E~I~~ak~~gIPIIVVINKiDL~~a~~erv 614 (1018)
+.+.||||||...+... +... ....+-++||++++.+ .+.. ....+....++. =++++|.|-. ...-.+
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~--~~~~~~~~~~~~~~~~~-~lIlTKlDet-~~~G~~ 159 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMG--QEDLEQALAFYEAFGID-GLILTKLDET-ARLGAL 159 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGG--GHHHHHHHHHHHHSSTC-EEEEESTTSS-STTHHH
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccC--hHHHHHHHHHhhcccCc-eEEEEeecCC-CCcccc
Confidence 56999999996543322 1111 1357889999999864 2333 333444444555 3448999974 344556
Q ss_pred HHHHHhcCCCCCCCCCCCcEEEEecCCCCChHHH
Q 001745 615 MQELSSIGLMPEDWGGDIPMVQISALKGEKVDDL 648 (1018)
Q Consensus 615 ~~eL~e~gl~~e~~g~~vpiVeISAktGeGIdeL 648 (1018)
...+...+ .|+-.+| +|++|++|
T Consensus 160 l~~~~~~~---------~Pi~~it--~Gq~V~Dl 182 (196)
T PF00448_consen 160 LSLAYESG---------LPISYIT--TGQRVDDL 182 (196)
T ss_dssp HHHHHHHT---------SEEEEEE--SSSSTTGE
T ss_pred eeHHHHhC---------CCeEEEE--CCCChhcC
Confidence 66666654 3555554 56777443
No 436
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=96.84 E-value=0.0087 Score=55.04 Aligned_cols=74 Identities=22% Similarity=0.229 Sum_probs=59.1
Q ss_pred ceEEEEeeecCCCcEEEEEeEeeEEecCCEEEE--cc---ceeEEEEEeccCCCcccccCCCccEEEe--ccCCCCCCCC
Q 001745 671 GTVIEAGLHKSKGPVATFILQNGTLKKGDVVVC--GE---AFGKVRALFDDSGNRVDEAGPSIPVQII--GLNGVPIAGD 743 (1018)
Q Consensus 671 g~ViEs~~dkg~G~VatglV~~GtLkvGD~Vv~--G~---~~gKVRaI~~~~g~~V~eA~pg~~V~V~--Gl~~vP~aGd 743 (1018)
+.|.+++...+.|+++.++|.+|+|++|+.+.+ +. ..++|++|..+ .+.+++|.+|+.+.|. +++++ ..||
T Consensus 3 ~~V~~vf~~~~~g~vag~kV~~G~l~~g~~v~vlr~~~~~~~g~i~sl~~~-~~~v~~a~~G~ecgi~l~~~~d~-~~Gd 80 (84)
T cd03692 3 AEVRAVFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGEVIYEGKISSLKRF-KDDVKEVKKGYECGITLENFNDI-KVGD 80 (84)
T ss_pred EEEEEEEECCCCcEEEEEEEEECEEeCCCEEEEEcCCCEEEEEEEEEEEEc-CcccCEECCCCEEEEEEeCcccC-CCCC
Confidence 345566655667899999999999999999887 33 56899999877 6889999999999764 77766 5788
Q ss_pred eEE
Q 001745 744 EFE 746 (1018)
Q Consensus 744 ~~~ 746 (1018)
.+.
T Consensus 81 vi~ 83 (84)
T cd03692 81 IIE 83 (84)
T ss_pred EEE
Confidence 764
No 437
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=96.80 E-value=0.0058 Score=57.11 Aligned_cols=73 Identities=26% Similarity=0.199 Sum_probs=55.5
Q ss_pred ceEEEEeeecCC-CcEEEEEeEeeEEecCCEEEE-cc----------ceeEEEEEeccCC---CcccccCCCccEEEecc
Q 001745 671 GTVIEAGLHKSK-GPVATFILQNGTLKKGDVVVC-GE----------AFGKVRALFDDSG---NRVDEAGPSIPVQIIGL 735 (1018)
Q Consensus 671 g~ViEs~~dkg~-G~VatglV~~GtLkvGD~Vv~-G~----------~~gKVRaI~~~~g---~~V~eA~pg~~V~V~Gl 735 (1018)
+.|+....++.. |.++.++|.+|+|+.||.|.+ ++ ...+|..|+...| .++++|.||+.|.|.|+
T Consensus 3 a~VfK~~~~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~v~gl 82 (94)
T cd04090 3 VHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLIKGI 82 (94)
T ss_pred EEEEeeeecCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCCEEEEECc
Confidence 467777777766 679999999999999999965 21 1356767766555 45899999999999999
Q ss_pred CCCCCCCCe
Q 001745 736 NGVPIAGDE 744 (1018)
Q Consensus 736 ~~vP~aGd~ 744 (1018)
++. +.+..
T Consensus 83 ~~~-~~~~~ 90 (94)
T cd04090 83 DSS-IVKTA 90 (94)
T ss_pred chh-eeceE
Confidence 875 55543
No 438
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=96.78 E-value=0.015 Score=69.78 Aligned_cols=158 Identities=15% Similarity=0.196 Sum_probs=90.0
Q ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCC
Q 001745 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTD 567 (1018)
Q Consensus 488 ~~r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~AD 567 (1018)
.++-..+.++|..++|||.||+.+.+..+.....+.+........+.. .+....+.+-|.+-. ....+.... ..+|
T Consensus 422 ~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~--~g~~k~LiL~ei~~~-~~~~l~~ke-~~cD 497 (625)
T KOG1707|consen 422 DRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEV--KGQQKYLILREIGED-DQDFLTSKE-AACD 497 (625)
T ss_pred cceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeee--ccccceEEEeecCcc-ccccccCcc-ceee
Confidence 344556889999999999999999986665433232222222222322 245556666666543 222221222 7799
Q ss_pred EEEEEEecCCCCChhHHH-HHHHH-HHcCCCEEEEEecCCCCCCChHH---HHHHHHhcCCCCCCCCCCCcEEEEecCCC
Q 001745 568 IAVIVVAADDGIRPQTNE-AIAHA-KAAGVPIVIAINKIDKDGANPER---VMQELSSIGLMPEDWGGDIPMVQISALKG 642 (1018)
Q Consensus 568 iVILVVDAddGv~~QT~E-~I~~a-k~~gIPIIVVINKiDL~~a~~er---v~~eL~e~gl~~e~~g~~vpiVeISAktG 642 (1018)
+++++||.++........ ..++. ....+|+++|..|+|+.....+- --....++++ -+-+.+|.++.
T Consensus 498 v~~~~YDsS~p~sf~~~a~v~~~~~~~~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i--------~~P~~~S~~~~ 569 (625)
T KOG1707|consen 498 VACLVYDSSNPRSFEYLAEVYNKYFDLYKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGL--------PPPIHISSKTL 569 (625)
T ss_pred eEEEecccCCchHHHHHHHHHHHhhhccCCceEEEeeccccchhhhccCCChHHHHHhcCC--------CCCeeeccCCC
Confidence 999999998644333322 22221 12679999999999995422100 0111223333 23355666642
Q ss_pred CChHHHHHHHHHHHHH
Q 001745 643 EKVDDLLETIMLVAEL 658 (1018)
Q Consensus 643 eGIdeLleaIl~lael 658 (1018)
.. .++|..|...+..
T Consensus 570 ~s-~~lf~kL~~~A~~ 584 (625)
T KOG1707|consen 570 SS-NELFIKLATMAQY 584 (625)
T ss_pred CC-chHHHHHHHhhhC
Confidence 22 7888888765543
No 439
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.71 E-value=0.056 Score=56.18 Aligned_cols=141 Identities=21% Similarity=0.293 Sum_probs=80.4
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCC-C--------------c--
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTP-G--------------H-- 552 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTP-G--------------H-- 552 (1018)
-..+|.|.|.||+|||||+.++...--. .|.+. -++++-++.-+++...|.++|+. | +
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~----~g~kv-gGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGk 78 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLRE----KGYKV-GGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGK 78 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHh----cCcee-eeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccce
Confidence 4568999999999999999987632110 01111 12334444445555556677766 3 1
Q ss_pred -----cchH----HHHHhhhccCCEEEEEEecCCCCC----hhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHH
Q 001745 553 -----EAFG----AMRARGARVTDIAVIVVAADDGIR----PQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELS 619 (1018)
Q Consensus 553 -----E~F~----~~r~rg~~~ADiVILVVDAddGv~----~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~ 619 (1018)
+.+. ....+.+..||++| +|=- |.| ....+.+......+.|+|.++.+-+. .-+.+.+.
T Consensus 79 Y~V~v~~le~i~~~al~rA~~~aDvII--IDEI-GpMElks~~f~~~ve~vl~~~kpliatlHrrsr-----~P~v~~ik 150 (179)
T COG1618 79 YGVNVEGLEEIAIPALRRALEEADVII--IDEI-GPMELKSKKFREAVEEVLKSGKPLIATLHRRSR-----HPLVQRIK 150 (179)
T ss_pred EEeeHHHHHHHhHHHHHHHhhcCCEEE--Eecc-cchhhccHHHHHHHHHHhcCCCcEEEEEecccC-----ChHHHHhh
Confidence 1111 22334456678655 4422 222 33456666667788999999888765 33455555
Q ss_pred hcCCCCCCCCCCCcEEEEecCCCCChHHHHHHHHHH
Q 001745 620 SIGLMPEDWGGDIPMVQISALKGEKVDDLLETIMLV 655 (1018)
Q Consensus 620 e~gl~~e~~g~~vpiVeISAktGeGIdeLleaIl~l 655 (1018)
..+- +-+| .|-+|=+.++..|+.+
T Consensus 151 ~~~~--------v~v~----lt~~NR~~i~~~Il~~ 174 (179)
T COG1618 151 KLGG--------VYVF----LTPENRNRILNEILSV 174 (179)
T ss_pred hcCC--------EEEE----EccchhhHHHHHHHHH
Confidence 4431 2222 5666777888877654
No 440
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=96.67 E-value=0.077 Score=62.02 Aligned_cols=181 Identities=15% Similarity=0.176 Sum_probs=112.5
Q ss_pred cCCCccHHHHHHHHHhCCCCCeEEEEEEcccC--CCCHhhHHHHHhcC--CEEEEecC-CC---ChhH----H----hHH
Q 001745 807 VDVQGSIEAVRQALQVLPQDNVTLKFLLQATG--DISASDVDLAVASK--AIILGFNV-KA---PGSV----K----TYA 870 (1018)
Q Consensus 807 aDv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG--~ItesDV~lA~as~--aiIi~FnV-~~---~~~a----~----~~A 870 (1018)
-|+-|...=+.+.+..+..-++-+-|+.+.-| +-|+....++...+ .+|+.+|= .. +.+. + ++.
T Consensus 85 iDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~ 164 (406)
T TIGR02034 85 ADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDEEVFENIKKDYLAFA 164 (406)
T ss_pred EeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccchHHHHHHHHHHHHHHH
Confidence 68888655555666666677888888887655 44555566666644 46777773 22 1211 1 112
Q ss_pred HhcC---ceEEEech-----HhHH--------HHHHHHHHhcccccceeeeeeEeEEEEEEeecC-CceEEEEEEeeeeE
Q 001745 871 DNKG---VEIRLYRV-----IYDL--------IDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSG-SGRVAGCMVSEGKL 933 (1018)
Q Consensus 871 ~~~~---V~I~~~~I-----IY~L--------iddik~~~~~~l~~~~~e~~~G~A~V~~vF~~~-~g~IaGc~V~~G~i 933 (1018)
++.+ +.|+.-+- |..+ ..-+.++|..+-.|.....---+.-|..+|+.. ...-.|-+|..|.|
T Consensus 165 ~~~~~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~L~~~~~~~~~~~~p~r~~i~~v~~~~~~~~g~~G~v~~G~l 244 (406)
T TIGR02034 165 EQLGFRDVTFIPLSALKGDNVVSRSESMPWYSGPTLLEILETVEVERDAQDLPLRFPVQYVNRPNLDFRGYAGTIASGSV 244 (406)
T ss_pred HHcCCCCccEEEeecccCCCCcccccCCCccchhHHHHHHHhcCCCCCcCCCCcccceEEEeecCCCcEEEEEEEeccee
Confidence 2223 23433221 1110 011334444433333222111234455777642 22225568999999
Q ss_pred eeCCcEEEeeCCEEEEEEEEeeeecccccccccccCceeEEEEccCCCCCCCCEEEE
Q 001745 934 VKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDLEEGDIIEA 990 (1018)
Q Consensus 934 ~~~~~vrviR~g~vi~~G~i~SLk~~k~dV~ev~~G~EcGi~i~~f~d~~~GD~ie~ 990 (1018)
+.|..+.++-.|. ..+|.||+.++.+|+++.+|+-|||.+.+..+++.||+|-.
T Consensus 245 ~~gd~v~i~P~~~---~~~VksI~~~~~~~~~a~~G~~v~l~l~~~~~i~rG~vl~~ 298 (406)
T TIGR02034 245 HVGDEVVVLPSGR---SSRVARIVTFDGDLEQARAGQAVTLTLDDEIDISRGDLLAA 298 (406)
T ss_pred ecCCEEEEeCCCc---EEEEEEEEECCcccCEeCCCCEEEEEECCccccCCccEEEc
Confidence 9999998887663 58999999999999999999999999998889999998843
No 441
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=96.62 E-value=0.0081 Score=55.96 Aligned_cols=73 Identities=25% Similarity=0.232 Sum_probs=56.2
Q ss_pred ceEEEEeeec-CCCcEEEEEeEeeEEecCCEEEEcc-----------ceeEEEEEeccCC---CcccccCCCccEEEecc
Q 001745 671 GTVIEAGLHK-SKGPVATFILQNGTLKKGDVVVCGE-----------AFGKVRALFDDSG---NRVDEAGPSIPVQIIGL 735 (1018)
Q Consensus 671 g~ViEs~~dk-g~G~VatglV~~GtLkvGD~Vv~G~-----------~~gKVRaI~~~~g---~~V~eA~pg~~V~V~Gl 735 (1018)
+.++....++ ..|.++.++|.+|+|+.||.+.+-. ...+|..|+...| .++++|.+|+.|.|.|+
T Consensus 3 ~~v~Ki~~~~~~~g~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~g~ 82 (93)
T cd03700 3 MYVTKMVPTPDKGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLIVGL 82 (93)
T ss_pred EEEEeCeECCCCCEEEEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEEECC
Confidence 3566666777 8899999999999999999996522 1356667766555 45899999999999999
Q ss_pred CCCCCCCCe
Q 001745 736 NGVPIAGDE 744 (1018)
Q Consensus 736 ~~vP~aGd~ 744 (1018)
+++ ..|+.
T Consensus 83 ~~~-~~g~~ 90 (93)
T cd03700 83 DQL-KSGTT 90 (93)
T ss_pred ccC-ceEeE
Confidence 875 56653
No 442
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=96.61 E-value=0.0031 Score=82.47 Aligned_cols=109 Identities=24% Similarity=0.298 Sum_probs=63.4
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCccccccc--------CCceeeeeeEEEEEecCCceecEEEEeCCC----cc----
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEA--------GGITQGIGAYKVQVPVDGKLQPCVFLDTPG----HE---- 553 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~--------gGiTqdIga~~V~i~~dgk~~~ItfIDTPG----HE---- 553 (1018)
.-|=.+|||.+|+||||||..- +-.+...+. .+-|+++..+ +. ....+|||+| ++
T Consensus 110 ~LPWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~ww-----f~---~~avliDtaG~y~~~~~~~~ 180 (1169)
T TIGR03348 110 DLPWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWW-----FT---DEAVLIDTAGRYTTQDSDPE 180 (1169)
T ss_pred cCCCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceE-----ec---CCEEEEcCCCccccCCCccc
Confidence 4467899999999999999876 222322111 1223332221 11 1467999999 21
Q ss_pred chHHHHHh---------hhccCCEEEEEEecCCCCC--hhH--------HHHHHHH---HHcCCCEEEEEecCCCC
Q 001745 554 AFGAMRAR---------GARVTDIAVIVVAADDGIR--PQT--------NEAIAHA---KAAGVPIVIAINKIDKD 607 (1018)
Q Consensus 554 ~F~~~r~r---------g~~~ADiVILVVDAddGv~--~QT--------~E~I~~a---k~~gIPIIVVINKiDL~ 607 (1018)
.....|.. --+-.|+||++||+.+-+. ++. +..+..+ ....+|+.|++||||+.
T Consensus 181 ~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 181 EDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLL 256 (1169)
T ss_pred ccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhh
Confidence 12222222 2245899999999987332 111 1111111 12468999999999984
No 443
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.61 E-value=0.011 Score=69.74 Aligned_cols=94 Identities=24% Similarity=0.286 Sum_probs=50.6
Q ss_pred eecEEEEeCCCccchHHHHH------hhhccCCEEEEEEecCCCCChhHHHHHHHHH-HcCCCEEEEEecCCCCCCChHH
Q 001745 541 LQPCVFLDTPGHEAFGAMRA------RGARVTDIAVIVVAADDGIRPQTNEAIAHAK-AAGVPIVIAINKIDKDGANPER 613 (1018)
Q Consensus 541 ~~~ItfIDTPGHE~F~~~r~------rg~~~ADiVILVVDAddGv~~QT~E~I~~ak-~~gIPIIVVINKiDL~~a~~er 613 (1018)
++.+.|+||||...+..... ...-..|.++||+|+..+ ....+.+.... ..++ .=+++||+|-.. ..-.
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg--q~~~~~a~~f~~~v~i-~giIlTKlD~~~-~~G~ 257 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG--QDAVNTAKTFNERLGL-TGVVLTKLDGDA-RGGA 257 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch--HHHHHHHHHHHhhCCC-CEEEEeCccCcc-cccH
Confidence 46799999999543322111 112357889999998743 33333333332 2233 355689999532 2222
Q ss_pred HHHHHHhcCCCCCCCCCCCcEEEEecCCCCChHHHH
Q 001745 614 VMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLL 649 (1018)
Q Consensus 614 v~~eL~e~gl~~e~~g~~vpiVeISAktGeGIdeLl 649 (1018)
+.......+ +|+.+++ +|+.+++|.
T Consensus 258 ~lsi~~~~~---------~PI~fi~--~Ge~i~dl~ 282 (428)
T TIGR00959 258 ALSVRSVTG---------KPIKFIG--VGEKIDDLE 282 (428)
T ss_pred HHHHHHHHC---------cCEEEEe--CCCChhhCc
Confidence 444333433 4566554 367775543
No 444
>PRK13695 putative NTPase; Provisional
Probab=96.59 E-value=0.026 Score=57.76 Aligned_cols=74 Identities=16% Similarity=0.222 Sum_probs=47.9
Q ss_pred hccCCEEEEEEe---cCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHhcCCCCCCCCCCCcEEEEec
Q 001745 563 ARVTDIAVIVVA---ADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISA 639 (1018)
Q Consensus 563 ~~~ADiVILVVD---AddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~e~~g~~vpiVeISA 639 (1018)
+..+|+ +++| ..+....+..+.+..+...+.|+|++.||... ..+...+..+ .+..++.+
T Consensus 94 l~~~~~--lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~~~-----~~~~~~i~~~--------~~~~i~~~-- 156 (174)
T PRK13695 94 LEEADV--IIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRRSV-----HPFVQEIKSR--------PGGRVYEL-- 156 (174)
T ss_pred cCCCCE--EEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECchhh-----HHHHHHHhcc--------CCcEEEEE--
Confidence 356676 6888 55566677788888887889999999998543 2223333322 12445655
Q ss_pred CCCCChHHHHHHHHH
Q 001745 640 LKGEKVDDLLETIML 654 (1018)
Q Consensus 640 ktGeGIdeLleaIl~ 654 (1018)
+-+|=+++...|..
T Consensus 157 -~~~~r~~~~~~~~~ 170 (174)
T PRK13695 157 -TPENRDSLPFEILN 170 (174)
T ss_pred -cchhhhhHHHHHHH
Confidence 56677788777753
No 445
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=96.57 E-value=0.081 Score=64.74 Aligned_cols=178 Identities=16% Similarity=0.173 Sum_probs=120.7
Q ss_pred EcCCCccHHHHHHHHHhCCCCCeEEEEEEcccCCC--CHhhHHHHHhcC-C-EEEEec-CCC-Chh--------HHhHHH
Q 001745 806 KVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDI--SASDVDLAVASK-A-IILGFN-VKA-PGS--------VKTYAD 871 (1018)
Q Consensus 806 KaDv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG~I--tesDV~lA~as~-a-iIi~Fn-V~~-~~~--------a~~~A~ 871 (1018)
=-|+-|.-.-+...+..+.+-++-+-|+.+.-|.. |..-+..+...+ . +|+.+| +.. +.+ ++++++
T Consensus 54 ~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~ 133 (581)
T TIGR00475 54 FIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQILN 133 (581)
T ss_pred EEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 35888876666667777777778888888877643 333343444444 2 778887 322 222 223333
Q ss_pred hc----CceEEEec-----hHhHHHHHHHHHHhcccccceeeeeeEeEEEEEEeec-CCceEEEEEEeeeeEeeCCcEEE
Q 001745 872 NK----GVEIRLYR-----VIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSS-GSGRVAGCMVSEGKLVKGCGIRV 941 (1018)
Q Consensus 872 ~~----~V~I~~~~-----IIY~Liddik~~~~~~l~~~~~e~~~G~A~V~~vF~~-~~g~IaGc~V~~G~i~~~~~vrv 941 (1018)
.. ++.|+.-+ -|-+|.+.+..++..+-.+. .+ ---..-|-.+|+. +.|.|+.-.|.+|+|+.|..+.+
T Consensus 134 ~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~~~~~-~~-~p~r~~Id~~f~v~G~GtVv~G~v~~G~i~~Gd~l~i 211 (581)
T TIGR00475 134 SYIFLKNAKIFKTSAKTGQGIGELKKELKNLLESLDIKR-IQ-KPLRMAIDRAFKVKGAGTVVTGTAFSGEVKVGDNLRL 211 (581)
T ss_pred HhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHhCCCcC-cC-CCcEEEEEEEEecCCcEEEEEEEEecceEecCCEEEE
Confidence 32 45665544 35566666666665543321 11 1223457789984 67999999999999999999998
Q ss_pred eeCCEEEEEEEEeeeecccccccccccCceeEEEEccCC--CCCCCCEE
Q 001745 942 IRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYD--DLEEGDII 988 (1018)
Q Consensus 942 iR~g~vi~~G~i~SLk~~k~dV~ev~~G~EcGi~i~~f~--d~~~GD~i 988 (1018)
.-.|. ..+|.||+.+.++|.++.+|+-|||.+.+.+ +++-|..+
T Consensus 212 ~P~~~---~~~Vr~iq~~~~~v~~a~aG~rval~L~~i~~~~i~rG~~~ 257 (581)
T TIGR00475 212 LPINH---EVRVKAIQAQNQDVEIAYAGQRIALNLMDVEPESLKRGLLI 257 (581)
T ss_pred CCCCc---eEEEeEEEECCccCCEEECCCEEEEEeCCCCHHHcCCceEE
Confidence 87664 5789999999999999999999999999754 78888544
No 446
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=96.55 E-value=0.079 Score=61.93 Aligned_cols=182 Identities=21% Similarity=0.181 Sum_probs=111.2
Q ss_pred cCCCccHHHHHHHHHhCCCCCeEEEEEEcccCC---CCHhhHHHHHhcC--CEEEEec-CCCC-hh--------HHhHHH
Q 001745 807 VDVQGSIEAVRQALQVLPQDNVTLKFLLQATGD---ISASDVDLAVASK--AIILGFN-VKAP-GS--------VKTYAD 871 (1018)
Q Consensus 807 aDv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG~---ItesDV~lA~as~--aiIi~Fn-V~~~-~~--------a~~~A~ 871 (1018)
-|+-|.-+=+...+..+..-++-+-|+.+.-|. -|..-+.++...+ .+|+.+| +... .+ +.++.+
T Consensus 85 iDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~~~~~~~~~i~~~l~ 164 (406)
T TIGR03680 85 VDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKEKALENYEEIKEFVK 164 (406)
T ss_pred EECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHHHHHHHHHHHHhhhh
Confidence 688887666666666666667777788877553 2334444454443 3677776 2322 11 111222
Q ss_pred hc---CceEEEechH-hHHHHHHHHHHhccccccee-eeeeEeEEEEEEeecC---------CceEEEEEEeeeeEeeCC
Q 001745 872 NK---GVEIRLYRVI-YDLIDDMRNAMEGLLETVEE-QVPIGSAEVRAIFSSG---------SGRVAGCMVSEGKLVKGC 937 (1018)
Q Consensus 872 ~~---~V~I~~~~II-Y~Liddik~~~~~~l~~~~~-e~~~G~A~V~~vF~~~---------~g~IaGc~V~~G~i~~~~ 937 (1018)
.. ++.++.-+-. -+=++++.++|...+++..+ ..---..-|..+|..+ .|.|..-+|.+|.|+.|.
T Consensus 165 ~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~~~~~~~~~~~~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~i~~gd 244 (406)
T TIGR03680 165 GTVAENAPIIPVSALHNANIDALLEAIEKFIPTPERDLDKPPLMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGKLKVGD 244 (406)
T ss_pred hcccCCCeEEEEECCCCCChHHHHHHHHHhCCCCCCCCCCCcEEEEEEEEeecCCCccccCCceeEEEEEEEeCEEeCCC
Confidence 21 4455433211 11235555555554442221 1112235567888532 356777899999999999
Q ss_pred cEEEeeCCE------EEE---EEEEeeeecccccccccccCceeEEEEc---c--CCCCCCCCEE
Q 001745 938 GIRVIRDGK------TVH---VGVLDSLRRVKENVKEVNAGLECGVGAA---D--YDDLEEGDII 988 (1018)
Q Consensus 938 ~vrviR~g~------vi~---~G~i~SLk~~k~dV~ev~~G~EcGi~i~---~--f~d~~~GD~i 988 (1018)
.+.+.=.+. ..| ..+|.||+.+..++.++.+|+-|||.+. + -.|+..||+|
T Consensus 245 ~v~i~P~~~~~~~g~~~~~~~~~~V~sI~~~~~~~~~a~~G~~v~i~l~~~~~i~~~dv~~G~vl 309 (406)
T TIGR03680 245 EIEIRPGIKVEKGGKTKWEPIYTEITSLRAGGYKVEEARPGGLVGVGTKLDPALTKADALAGQVV 309 (406)
T ss_pred EEEEccCccccccccccccccceEEeEEEECCEECCEEcCCCEEEEeeccCCCCCHHHcccccEE
Confidence 999984432 111 3589999999999999999999999984 2 2578888875
No 447
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=96.55 E-value=0.0016 Score=76.69 Aligned_cols=55 Identities=18% Similarity=0.297 Sum_probs=45.1
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCc-ccccccCCceeeeeeEEEEEecCCceecEEEEeCCCc
Q 001745 491 PPVLTIMGHVDHGKTTLLDHIRKTK-VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH 552 (1018)
Q Consensus 491 ~pkVaImGhvdvGKTTLLnrL~~~~-v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGH 552 (1018)
..+|+++|-|||||||+||.|.+.+ +.++..+|.|.|+..+.+. -.+.+.||||-
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls-------~~v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS-------PSVCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcC-------CCceecCCCCc
Confidence 3679999999999999999999765 5678889999997655543 24899999994
No 448
>PRK10867 signal recognition particle protein; Provisional
Probab=96.54 E-value=0.019 Score=67.85 Aligned_cols=94 Identities=24% Similarity=0.270 Sum_probs=50.3
Q ss_pred eecEEEEeCCCccchHHH-H---Hh--hhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCC-EEEEEecCCCCCCChHH
Q 001745 541 LQPCVFLDTPGHEAFGAM-R---AR--GARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGANPER 613 (1018)
Q Consensus 541 ~~~ItfIDTPGHE~F~~~-r---~r--g~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIP-IIVVINKiDL~~a~~er 613 (1018)
.+.+.|+||||.-.+... + .. .+-..|.++||+|+..+ ....+.+..... .++ .-+++||+|-. ...-.
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g--q~av~~a~~F~~-~~~i~giIlTKlD~~-~rgG~ 258 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG--QDAVNTAKAFNE-ALGLTGVILTKLDGD-ARGGA 258 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH--HHHHHHHHHHHh-hCCCCEEEEeCccCc-ccccH
Confidence 467999999995432211 1 11 12356788999998642 223333333322 233 35667999963 22223
Q ss_pred HHHHHHhcCCCCCCCCCCCcEEEEecCCCCChHHHH
Q 001745 614 VMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLL 649 (1018)
Q Consensus 614 v~~eL~e~gl~~e~~g~~vpiVeISAktGeGIdeLl 649 (1018)
+.......+ .|+.+++ +|+++++|.
T Consensus 259 alsi~~~~~---------~PI~fig--~Ge~v~DLe 283 (433)
T PRK10867 259 ALSIRAVTG---------KPIKFIG--TGEKLDDLE 283 (433)
T ss_pred HHHHHHHHC---------cCEEEEe--CCCccccCc
Confidence 444333333 4566654 377776543
No 449
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=96.53 E-value=0.025 Score=64.26 Aligned_cols=138 Identities=20% Similarity=0.201 Sum_probs=76.7
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCc----c--cccccCCceeee------eeEEEEEe-------cCC-----------
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTK----V--AAAEAGGITQGI------GAYKVQVP-------VDG----------- 539 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~----v--~~~e~gGiTqdI------ga~~V~i~-------~dg----------- 539 (1018)
+.|+.+|.|--|+||||||++|.... + ...+.+.+..|- ....+++. ..+
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~v~iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~l~~l~~ 82 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLD 82 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCCccccHHHHhCcCceEEEECCCEEEEccCchHHHHHHHHHH
Confidence 56899999999999999999997431 1 122322221100 00011110 000
Q ss_pred ------ceecEEEEeCCCccchHHHHHhhh--------ccCCEEEEEEecCCCCChh--HHHHHHHHHHcCCCEEEEEec
Q 001745 540 ------KLQPCVFLDTPGHEAFGAMRARGA--------RVTDIAVIVVAADDGIRPQ--TNEAIAHAKAAGVPIVIAINK 603 (1018)
Q Consensus 540 ------k~~~ItfIDTPGHE~F~~~r~rg~--------~~ADiVILVVDAddGv~~Q--T~E~I~~ak~~gIPIIVVINK 603 (1018)
......||.|.|...-..+..... -..|.+|.|+|+....... ......++..+ =+|++||
T Consensus 83 ~~~~~~~~~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~A---D~IvlnK 159 (318)
T PRK11537 83 NLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYA---DRILLTK 159 (318)
T ss_pred HHhccCCCCCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhC---CEEEEec
Confidence 025678999999765444333221 2358899999997632111 11222333333 3889999
Q ss_pred CCCCCCChHHHHHHHHhcCCCCCCCCCCCcEEEEe
Q 001745 604 IDKDGANPERVMQELSSIGLMPEDWGGDIPMVQIS 638 (1018)
Q Consensus 604 iDL~~a~~erv~~eL~e~gl~~e~~g~~vpiVeIS 638 (1018)
+|+... .+++...+..++ ...+++.++
T Consensus 160 ~Dl~~~-~~~~~~~l~~ln-------p~a~i~~~~ 186 (318)
T PRK11537 160 TDVAGE-AEKLRERLARIN-------ARAPVYTVV 186 (318)
T ss_pred cccCCH-HHHHHHHHHHhC-------CCCEEEEec
Confidence 999753 355666665543 245666543
No 450
>PRK00098 GTPase RsgA; Reviewed
Probab=96.51 E-value=0.0034 Score=70.23 Aligned_cols=57 Identities=26% Similarity=0.426 Sum_probs=36.7
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCccc-ccccC-------CceeeeeeEEEEEecCCceecEEEEeCCCccc
Q 001745 491 PPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAG-------GITQGIGAYKVQVPVDGKLQPCVFLDTPGHEA 554 (1018)
Q Consensus 491 ~pkVaImGhvdvGKTTLLnrL~~~~v~-~~e~g-------GiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~ 554 (1018)
...++++|.+|+|||||+|+|.+.... .++.. .+|++...+.+ .+ ...++||||...
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~----~~---~~~~~DtpG~~~ 228 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDL----PG---GGLLIDTPGFSS 228 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEc----CC---CcEEEECCCcCc
Confidence 457999999999999999999864322 22211 24544333222 22 248999999653
No 451
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=96.49 E-value=0.014 Score=59.55 Aligned_cols=81 Identities=17% Similarity=0.201 Sum_probs=58.6
Q ss_pred ceecEEEEeCCCccchHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHH
Q 001745 540 KLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELS 619 (1018)
Q Consensus 540 k~~~ItfIDTPGHE~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv~~eL~ 619 (1018)
..+.+.|+|||+... ......+..+|.+++++..+..........++.++..++|+.+++||+|.......++.+.+.
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~~~~~~~~~~~~~~ 168 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLNDEIAEEIEDYCE 168 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCCCcchHHHHHHHHH
Confidence 356799999997533 233455688999999998876555556677777888889999999999985444445555555
Q ss_pred hcC
Q 001745 620 SIG 622 (1018)
Q Consensus 620 e~g 622 (1018)
+++
T Consensus 169 ~~~ 171 (179)
T cd03110 169 EEG 171 (179)
T ss_pred HcC
Confidence 544
No 452
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=96.45 E-value=0.0052 Score=68.47 Aligned_cols=58 Identities=24% Similarity=0.409 Sum_probs=37.2
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCccc-cccc-------CCceeeeeeEEEEEecCCceecEEEEeCCCccchH
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVA-AAEA-------GGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFG 556 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~-~~e~-------gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~ 556 (1018)
..++++|++|+|||||+|.|.+.... .++. ..+|.+...+. ..+. ..++||||...|.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~----~~~~---~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFP----LPGG---GLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEE----cCCC---CEEEECCCCCccC
Confidence 67999999999999999999864322 1111 12454432222 2222 3799999986653
No 453
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=96.45 E-value=0.014 Score=57.03 Aligned_cols=66 Identities=29% Similarity=0.266 Sum_probs=54.0
Q ss_pred CCCCcceEEEEeeec--------CCCcEEEEEeEeeEEecCCEEEEc--------------cceeEEEEEeccCCCcccc
Q 001745 666 HRNAKGTVIEAGLHK--------SKGPVATFILQNGTLKKGDVVVCG--------------EAFGKVRALFDDSGNRVDE 723 (1018)
Q Consensus 666 ~r~~~g~ViEs~~dk--------g~G~VatglV~~GtLkvGD~Vv~G--------------~~~gKVRaI~~~~g~~V~e 723 (1018)
+.++...|.+++... .+|.|+++.+.+|.|++||.|.+- +.+.+|.+|+.. ++.+++
T Consensus 3 ~~pp~M~V~RsFdinkPG~~~~~l~GgVigGsi~~G~lkvgdeIEIrpg~~~~~~~~~~~~pi~T~I~sl~~~-~~~l~~ 81 (113)
T cd03688 3 TSPPRMIVIRSFDVNKPGTEVDDLKGGVAGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLKAE-NNDLQE 81 (113)
T ss_pred CCCceEEEEEEEecCCCCCccccceeeEEEEEEEEEEEeCCCEEEEeeceeeecCCCeeEEEEEEEEEEEEec-CccccE
Confidence 456667777776554 899999999999999999988541 246789999887 688999
Q ss_pred cCCCccEEE
Q 001745 724 AGPSIPVQI 732 (1018)
Q Consensus 724 A~pg~~V~V 732 (1018)
|.||..+.|
T Consensus 82 a~pGgliGv 90 (113)
T cd03688 82 AVPGGLIGV 90 (113)
T ss_pred EeCCCeEEE
Confidence 999999976
No 454
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.45 E-value=0.046 Score=63.99 Aligned_cols=147 Identities=17% Similarity=0.238 Sum_probs=78.5
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcC------ccc--ccc---cCCce--------eeeeeEEEEEe---------cC-C
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKT------KVA--AAE---AGGIT--------QGIGAYKVQVP---------VD-G 539 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~------~v~--~~e---~gGiT--------qdIga~~V~i~---------~d-g 539 (1018)
.++.+|+|+|..|+||||++..|... ++. ..+ .+.+. .++..+...-. +. .
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~ 318 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 318 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhc
Confidence 45678999999999999999988521 111 000 00000 01111111000 00 1
Q ss_pred ceecEEEEeCCCccchHHH----HHhhh--ccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHH
Q 001745 540 KLQPCVFLDTPGHEAFGAM----RARGA--RVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPER 613 (1018)
Q Consensus 540 k~~~ItfIDTPGHE~F~~~----r~rg~--~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~er 613 (1018)
.++.+.||||||....... ....+ ...|.++||+|++-+- ....+.+......++ -=++++|+|-.. ..-.
T Consensus 319 ~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~-~d~~~i~~~F~~~~i-dglI~TKLDET~-k~G~ 395 (436)
T PRK11889 319 ARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS-KDMIEIITNFKDIHI-DGIVFTKFDETA-SSGE 395 (436)
T ss_pred cCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh-HHHHHHHHHhcCCCC-CEEEEEcccCCC-CccH
Confidence 1357999999996432221 22222 3457889999875321 222444444443333 356679999743 4445
Q ss_pred HHHHHHhcCCCCCCCCCCCcEEEEecCCCCChHHHH
Q 001745 614 VMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLL 649 (1018)
Q Consensus 614 v~~eL~e~gl~~e~~g~~vpiVeISAktGeGIdeLl 649 (1018)
+.......+ .|+..++ +|++|.+=+
T Consensus 396 iLni~~~~~---------lPIsyit--~GQ~VPeDI 420 (436)
T PRK11889 396 LLKIPAVSS---------APIVLMT--DGQDVKKNI 420 (436)
T ss_pred HHHHHHHHC---------cCEEEEe--CCCCCCcch
Confidence 555555544 4555543 577776644
No 455
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=96.45 E-value=0.017 Score=53.41 Aligned_cols=77 Identities=25% Similarity=0.360 Sum_probs=55.5
Q ss_pred CCCcceEEEEeeecCCCcEEEEEeEeeEEecCCEEEEccceeEEEEEeccCCCcccccCCCccEEEe--ccCCCCCCCCe
Q 001745 667 RNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEAFGKVRALFDDSGNRVDEAGPSIPVQII--GLNGVPIAGDE 744 (1018)
Q Consensus 667 r~~~g~ViEs~~dkg~G~VatglV~~GtLkvGD~Vv~G~~~gKVRaI~~~~g~~V~eA~pg~~V~V~--Gl~~vP~aGd~ 744 (1018)
+++...|+.-+.-..+. ++.|.|..|+|++|..+ =|...|+|++|+++ ++++++|.+|+.|.|. |.-.+ ..||.
T Consensus 3 ~p~ki~Ilp~~vFr~~~-~IvG~V~~G~ik~G~~l-~G~~iG~I~sIe~~-~k~v~~A~~G~eVai~Ieg~~~i-~eGDi 78 (81)
T PF14578_consen 3 RPGKIRILPVCVFRQSD-AIVGEVLEGIIKPGYPL-DGRKIGRIKSIEDN-GKNVDEAKKGDEVAISIEGPTQI-KEGDI 78 (81)
T ss_dssp -SEEEEEEEEEEECTCC-EEEEEEEEEEEETT-EE-CSSCEEEEEEEEET-TEEESEEETT-EEEEEEET--TB--TT-E
T ss_pred CceEEEECCcCEEecCC-eEEEEEeeeEEeCCCcc-CCEEEEEEEEeEEC-CcCccccCCCCEEEEEEeCCccC-CCCCE
Confidence 34555666666666777 77779999999999999 67779999999988 7999999999999864 54333 56776
Q ss_pred EEE
Q 001745 745 FEV 747 (1018)
Q Consensus 745 ~~v 747 (1018)
+++
T Consensus 79 LyV 81 (81)
T PF14578_consen 79 LYV 81 (81)
T ss_dssp EEE
T ss_pred EeC
Confidence 654
No 456
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=96.44 E-value=0.12 Score=61.94 Aligned_cols=180 Identities=14% Similarity=0.158 Sum_probs=111.7
Q ss_pred cCCCccHHHHHHHHHhCCCCCeEEEEEEcccC--CCCHhhHHHHHhcC--CEEEEec-CCC---Chh----HH----hHH
Q 001745 807 VDVQGSIEAVRQALQVLPQDNVTLKFLLQATG--DISASDVDLAVASK--AIILGFN-VKA---PGS----VK----TYA 870 (1018)
Q Consensus 807 aDv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG--~ItesDV~lA~as~--aiIi~Fn-V~~---~~~----a~----~~A 870 (1018)
-|+-|.-.=+.+.+..+..-++-+-|+.+.-| +-|+....++...+ -+|+..| +.. +.+ ++ .+.
T Consensus 112 iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~ 191 (474)
T PRK05124 112 ADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSEEVFERIREDYLTFA 191 (474)
T ss_pred EECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccchhHHHHHHHHHHHHHH
Confidence 68888543344555566666778888877544 45666777776654 4677777 222 111 11 112
Q ss_pred Hhc----CceEEEech--------------HhHHHHHHHHHHhcccccceeeeeeEeEEEEEEeecCC-ceEEEEEEeee
Q 001745 871 DNK----GVEIRLYRV--------------IYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSGS-GRVAGCMVSEG 931 (1018)
Q Consensus 871 ~~~----~V~I~~~~I--------------IY~Liddik~~~~~~l~~~~~e~~~G~A~V~~vF~~~~-g~IaGc~V~~G 931 (1018)
++. .+.|+..+. .|+- ..+.++++.+-.|...+.---+.-|..+|+... ....+=+|..|
T Consensus 192 ~~~~~~~~~~iipvSA~~g~ni~~~~~~~~wy~G-~tLl~~L~~i~~~~~~~~~p~r~~I~~v~~~~~~~~g~~G~V~sG 270 (474)
T PRK05124 192 EQLPGNLDIRFVPLSALEGDNVVSQSESMPWYSG-PTLLEVLETVDIQRVVDAQPFRFPVQYVNRPNLDFRGYAGTLASG 270 (474)
T ss_pred HhcCCCCCceEEEEEeecCCCcccccccccccch-hhHHHHHhhcCCCCCCCCCCceeeEEEEEecCCcccceEEEEEeE
Confidence 222 244544331 1211 123344554433332222222344556655321 11133479999
Q ss_pred eEeeCCcEEEeeCCEEEEEEEEeeeecccccccccccCceeEEEEccCCCCCCCCEEEE
Q 001745 932 KLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDLEEGDIIEA 990 (1018)
Q Consensus 932 ~i~~~~~vrviR~g~vi~~G~i~SLk~~k~dV~ev~~G~EcGi~i~~f~d~~~GD~ie~ 990 (1018)
.|+.|..+.+.-.|. ..+|.||..+..+|.++.+|+-|+|.+.+..+++.||+|-.
T Consensus 271 ~l~~Gd~v~i~P~~~---~~~VksI~~~~~~v~~A~aG~~V~l~L~~~~~i~rG~VL~~ 326 (474)
T PRK05124 271 VVKVGDRVKVLPSGK---ESNVARIVTFDGDLEEAFAGEAITLVLEDEIDISRGDLLVA 326 (474)
T ss_pred EEecCCEEEEecCCc---eEEEEEEEEcCccccCcCCCCEEEEEeCCccccCCccEEEC
Confidence 999999999987774 57899999999999999999999999999899999999854
No 457
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=96.41 E-value=0.13 Score=63.56 Aligned_cols=179 Identities=16% Similarity=0.189 Sum_probs=112.4
Q ss_pred cCCCccHHHHHHHHHhCCCCCeEEEEEEcccC--CCCHhhHHHHHhcC--CEEEEec-CCC---Chh--------HHhHH
Q 001745 807 VDVQGSIEAVRQALQVLPQDNVTLKFLLQATG--DISASDVDLAVASK--AIILGFN-VKA---PGS--------VKTYA 870 (1018)
Q Consensus 807 aDv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG--~ItesDV~lA~as~--aiIi~Fn-V~~---~~~--------a~~~A 870 (1018)
-|+-|--+-+...+..+..-++-+-|+.+.-| +-|+....++...+ -+|+..| +.. +.+ +.++.
T Consensus 109 iDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~ 188 (632)
T PRK05506 109 ADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQEVFDEIVADYRAFA 188 (632)
T ss_pred EECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchhHHHHHHHHHHHHHH
Confidence 78888654455555566666777778877544 45666677776654 4677777 222 121 11112
Q ss_pred HhcCc---eEEEec------h--------HhHHHHHHHHHHhcccccceeeeeeEeEEEEEEeecC-CceEEEEEEeeee
Q 001745 871 DNKGV---EIRLYR------V--------IYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSG-SGRVAGCMVSEGK 932 (1018)
Q Consensus 871 ~~~~V---~I~~~~------I--------IY~Liddik~~~~~~l~~~~~e~~~G~A~V~~vF~~~-~g~IaGc~V~~G~ 932 (1018)
++.+. .|+..+ + .|+- ..+.+++..+..|.....---+.-|..+|+.. .....|-+|..|.
T Consensus 189 ~~~~~~~~~iipiSA~~g~ni~~~~~~~~wy~g-~tL~~~l~~~~~~~~~~~~p~r~~i~~v~~~~~~~~g~~G~v~~G~ 267 (632)
T PRK05506 189 AKLGLHDVTFIPISALKGDNVVTRSARMPWYEG-PSLLEHLETVEIASDRNLKDFRFPVQYVNRPNLDFRGFAGTVASGV 267 (632)
T ss_pred HHcCCCCccEEEEecccCCCccccccCCCcccH-hHHHHHHhcCCCCCCcCCCCceeeEEEEEecCCCceEEEEEEecce
Confidence 23332 233322 1 1211 23445555544333222111234455676532 1122344799999
Q ss_pred EeeCCcEEEeeCCEEEEEEEEeeeecccccccccccCceeEEEEccCCCCCCCCEEE
Q 001745 933 LVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAADYDDLEEGDIIE 989 (1018)
Q Consensus 933 i~~~~~vrviR~g~vi~~G~i~SLk~~k~dV~ev~~G~EcGi~i~~f~d~~~GD~ie 989 (1018)
|+.|..+.++-.+. ..+|.||+.+.+.|.++.+|+-|||.+.+..+++.||+|-
T Consensus 268 l~~gd~v~i~P~~~---~~~VksI~~~~~~~~~a~aG~~v~i~l~~~~~i~rG~vL~ 321 (632)
T PRK05506 268 VRPGDEVVVLPSGK---TSRVKRIVTPDGDLDEAFAGQAVTLTLADEIDISRGDMLA 321 (632)
T ss_pred eecCCEEEEcCCCc---eEEEEEEEECCceeCEEcCCCeEEEEecCccccCCccEEe
Confidence 99999999987664 5899999999999999999999999999888999999985
No 458
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=96.40 E-value=0.0045 Score=69.54 Aligned_cols=58 Identities=21% Similarity=0.489 Sum_probs=43.7
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcC------cccccccCCceeeeee-EEEEEecCCceecEEEEeCCC
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKT------KVAAAEAGGITQGIGA-YKVQVPVDGKLQPCVFLDTPG 551 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~------~v~~~e~gGiTqdIga-~~V~i~~dgk~~~ItfIDTPG 551 (1018)
.-.+.|.|+|-||+|||||+|+++.. ...++..+|+|+.+.. +.+. ....+.++||||
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~-----~rp~vy~iDTPG 205 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRIS-----HRPPVYLIDTPG 205 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEec-----cCCceEEecCCC
Confidence 35678999999999999999998632 2346778899998754 2222 224699999999
No 459
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.40 E-value=0.062 Score=67.29 Aligned_cols=146 Identities=20% Similarity=0.201 Sum_probs=75.9
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCccc-cc--ccCCc---eee---------------eeeEEEEEe-------cCCce
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA-AA--EAGGI---TQG---------------IGAYKVQVP-------VDGKL 541 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v~-~~--e~gGi---Tqd---------------Iga~~V~i~-------~dgk~ 541 (1018)
++.+|+|+|..|+||||++..|...... .+ ...-+ |.. +.++...-. -.-.+
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~ 263 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGD 263 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcC
Confidence 4568999999999999999988632110 00 00000 111 101100000 01134
Q ss_pred ecEEEEeCCCccchH----HHHHh--hhccCCEEEEEEecCCCCChhHH-HHHHHHHHc-CC-CEEEEEecCCCCCCChH
Q 001745 542 QPCVFLDTPGHEAFG----AMRAR--GARVTDIAVIVVAADDGIRPQTN-EAIAHAKAA-GV-PIVIAINKIDKDGANPE 612 (1018)
Q Consensus 542 ~~ItfIDTPGHE~F~----~~r~r--g~~~ADiVILVVDAddGv~~QT~-E~I~~ak~~-gI-PIIVVINKiDL~~a~~e 612 (1018)
+.+.||||||..... ..... .....+-++||+|++. ..+.. +.+...... .. +-=++++|.|-. ...-
T Consensus 264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~--~~~~l~~i~~~f~~~~~~~i~glIlTKLDEt-~~~G 340 (767)
T PRK14723 264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAAS--HGDTLNEVVHAYRHGAGEDVDGCIITKLDEA-THLG 340 (767)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCC--cHHHHHHHHHHHhhcccCCCCEEEEeccCCC-CCcc
Confidence 579999999932211 11111 1234567899999874 23332 233333322 11 234668999974 2445
Q ss_pred HHHHHHHhcCCCCCCCCCCCcEEEEecCCCCCh-HHHH
Q 001745 613 RVMQELSSIGLMPEDWGGDIPMVQISALKGEKV-DDLL 649 (1018)
Q Consensus 613 rv~~eL~e~gl~~e~~g~~vpiVeISAktGeGI-deLl 649 (1018)
.+.......+ .|+..++ +|++| ++|.
T Consensus 341 ~iL~i~~~~~---------lPI~yit--~GQ~VPdDL~ 367 (767)
T PRK14723 341 PALDTVIRHR---------LPVHYVS--TGQKVPEHLE 367 (767)
T ss_pred HHHHHHHHHC---------CCeEEEe--cCCCChhhcc
Confidence 5565555544 4555553 68888 5543
No 460
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=96.39 E-value=0.0036 Score=74.12 Aligned_cols=146 Identities=23% Similarity=0.292 Sum_probs=100.6
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEE
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVI 571 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVIL 571 (1018)
.+++|+|...+|||+|+.+++...+...+.+. -+.|..++..++..+.+.+.|-.||.. ..+....|++||
T Consensus 31 lk~givg~~~sgktalvhr~ltgty~~~e~~e----~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIf 101 (749)
T KOG0705|consen 31 LKLGIVGTSQSGKTALVHRYLTGTYTQDESPE----GGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVF 101 (749)
T ss_pred hheeeeecccCCceeeeeeeccceeccccCCc----CccceeeEEeeccceEeeeecccCCch-----hhhhhhccceEE
Confidence 47999999999999999998876665444321 123455555677888888999888643 455678899999
Q ss_pred EEecCCCCChhHHHHHHHHHH-----cCCCEEEEEecCCCCCCCh------HHHHHHHHhcCCCCCCCCCCCcEEEEecC
Q 001745 572 VVAADDGIRPQTNEAIAHAKA-----AGVPIVIAINKIDKDGANP------ERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (1018)
Q Consensus 572 VVDAddGv~~QT~E~I~~ak~-----~gIPIIVVINKiDL~~a~~------erv~~eL~e~gl~~e~~g~~vpiVeISAk 640 (1018)
||...+..+.|+.+.+.+... ..+|+++++++-=. .+.. .+....+..+ ..+.+|+.+|.
T Consensus 102 vf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~i-S~~~~rv~~da~~r~l~~~~--------krcsy~et~at 172 (749)
T KOG0705|consen 102 VFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHI-SAKRPRVITDDRARQLSAQM--------KRCSYYETCAT 172 (749)
T ss_pred EEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchh-hcccccccchHHHHHHHHhc--------Cccceeecchh
Confidence 999999888888877654332 34666766665322 1111 2222222222 24678999999
Q ss_pred CCCChHHHHHHHHHH
Q 001745 641 KGEKVDDLLETIMLV 655 (1018)
Q Consensus 641 tGeGIdeLleaIl~l 655 (1018)
+|.+++..|..+...
T Consensus 173 yGlnv~rvf~~~~~k 187 (749)
T KOG0705|consen 173 YGLNVERVFQEVAQK 187 (749)
T ss_pred hhhhHHHHHHHHHHH
Confidence 999999999877543
No 461
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=96.39 E-value=0.094 Score=64.39 Aligned_cols=178 Identities=22% Similarity=0.207 Sum_probs=108.2
Q ss_pred cCCCccHHHHHHHHHhCCCCCeEEEEEEcccC--CCCHhhHHHHHhcC-CEEEEecCCCCh---h----HHhHHHhcCce
Q 001745 807 VDVQGSIEAVRQALQVLPQDNVTLKFLLQATG--DISASDVDLAVASK-AIILGFNVKAPG---S----VKTYADNKGVE 876 (1018)
Q Consensus 807 aDv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG--~ItesDV~lA~as~-aiIi~FnV~~~~---~----a~~~A~~~~V~ 876 (1018)
-|+-|..+-.......+..-+.-+-|+.+.-| .-|...+.++...+ .+|+..| +.+- + ..++++..+..
T Consensus 75 iDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViN-KiDl~~~~~~~~~~el~~~lg~~ 153 (595)
T TIGR01393 75 IDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVIN-KIDLPSADPERVKKEIEEVIGLD 153 (595)
T ss_pred EECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEE-CcCCCccCHHHHHHHHHHHhCCC
Confidence 58888876554444555555666767766544 33344455555544 3555555 3331 1 13445545542
Q ss_pred ---EEE-----echHhHHHHHHHHHHhcccccceeeeeeEeEEEEEEee-cCCceEEEEEEeeeeEeeCCcEEEeeCCEE
Q 001745 877 ---IRL-----YRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKT 947 (1018)
Q Consensus 877 ---I~~-----~~IIY~Liddik~~~~~~l~~~~~e~~~G~A~V~~vF~-~~~g~IaGc~V~~G~i~~~~~vrviR~g~v 947 (1018)
++. ..-|-+|++.+.+.+ .+|.....---.|-|-.+|. ...|.|+-++|.+|+|+.|..++++..|..
T Consensus 154 ~~~vi~vSAktG~GI~~Lle~I~~~l---p~p~~~~~~pl~~~V~~~~~d~~~G~v~~~rV~sG~lk~Gd~v~~~~~~~~ 230 (595)
T TIGR01393 154 ASEAILASAKTGIGIEEILEAIVKRV---PPPKGDPDAPLKALIFDSHYDNYRGVVALVRVFEGTIKPGDKIRFMSTGKE 230 (595)
T ss_pred cceEEEeeccCCCCHHHHHHHHHHhC---CCCCCCCCCCeEEEEEEEEEeCCCcEEEEEEEECCEEecCCEEEEecCCCe
Confidence 221 223445555554433 22322221112344445554 457999999999999999999999998865
Q ss_pred EEEEEEeeeecccccccccccCceeEEEEcc---CCCCCCCCEEE
Q 001745 948 VHVGVLDSLRRVKENVKEVNAGLECGVGAAD---YDDLEEGDIIE 989 (1018)
Q Consensus 948 i~~G~i~SLk~~k~dV~ev~~G~EcGi~i~~---f~d~~~GD~ie 989 (1018)
-..+.|..+.-....|.++.+|+ +|+.+.+ ..+++.||+|-
T Consensus 231 ~~v~~i~~~~~~~~~v~~~~aGd-Ig~i~~~~~~~~~~~~Gdtl~ 274 (595)
T TIGR01393 231 YEVDEVGVFTPKLTKTDELSAGE-VGYIIAGIKDVSDVRVGDTIT 274 (595)
T ss_pred eEEeEEEEecCCceECCEEcCCC-EEEEeccccccCccCCCCEEE
Confidence 44556654444458899999999 8887764 57899999994
No 462
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.36 E-value=0.037 Score=55.68 Aligned_cols=76 Identities=12% Similarity=0.207 Sum_probs=51.3
Q ss_pred cEEEEeCCCccchHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCC-EEEEEecCCCCCCChHHHHHHHHh
Q 001745 543 PCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDKDGANPERVMQELSS 620 (1018)
Q Consensus 543 ~ItfIDTPGHE~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIP-IIVVINKiDL~~a~~erv~~eL~e 620 (1018)
.+.|+|||+.... .....+..+|.+|++++.+......+...++.+...+.+ +.+++|++|.......+....+.+
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~~~~ 140 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDMVEGGDMVEDIEE 140 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcccccchhhHHHHHHH
Confidence 6999999985433 234456899999999988765555555666666666665 678999999754333333334433
No 463
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.30 E-value=0.027 Score=66.34 Aligned_cols=144 Identities=18% Similarity=0.219 Sum_probs=75.8
Q ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHcCcccc---cccCCcee------------------eeeeEEEEEe-------cCC
Q 001745 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVAA---AEAGGITQ------------------GIGAYKVQVP-------VDG 539 (1018)
Q Consensus 488 ~~r~pkVaImGhvdvGKTTLLnrL~~~~v~~---~e~gGiTq------------------dIga~~V~i~-------~dg 539 (1018)
...+.+|+++|..|+||||++..|....... ...+-+|. ++..+.+.-. ..-
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l 267 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHEL 267 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHh
Confidence 3567799999999999999999775421000 00000010 0101100000 011
Q ss_pred ceecEEEEeCCCccchHHHH----Hh--hhccCCEEEEEEecCCCCChhHHH-HHHHHHHcCCCEEEEEecCCCCCCChH
Q 001745 540 KLQPCVFLDTPGHEAFGAMR----AR--GARVTDIAVIVVAADDGIRPQTNE-AIAHAKAAGVPIVIAINKIDKDGANPE 612 (1018)
Q Consensus 540 k~~~ItfIDTPGHE~F~~~r----~r--g~~~ADiVILVVDAddGv~~QT~E-~I~~ak~~gIPIIVVINKiDL~~a~~e 612 (1018)
.++.+.++||+|........ .. .....+-.+||+|++- ..++.. .+......++ -=++++|.|-. ...-
T Consensus 268 ~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~--~~~~~~~~~~~f~~~~~-~~~I~TKlDEt-~~~G 343 (420)
T PRK14721 268 RGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATS--SGDTLDEVISAYQGHGI-HGCIITKVDEA-ASLG 343 (420)
T ss_pred cCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCC--CHHHHHHHHHHhcCCCC-CEEEEEeeeCC-CCcc
Confidence 34568999999954432211 11 1122456789999874 233333 3333332232 35667999974 2445
Q ss_pred HHHHHHHhcCCCCCCCCCCCcEEEEecCCCCChH
Q 001745 613 RVMQELSSIGLMPEDWGGDIPMVQISALKGEKVD 646 (1018)
Q Consensus 613 rv~~eL~e~gl~~e~~g~~vpiVeISAktGeGId 646 (1018)
.+...+...+ .|+..++ +|++|.
T Consensus 344 ~~l~~~~~~~---------lPi~yvt--~Gq~VP 366 (420)
T PRK14721 344 IALDAVIRRK---------LVLHYVT--NGQKVP 366 (420)
T ss_pred HHHHHHHHhC---------CCEEEEE--CCCCch
Confidence 5555555544 4555553 678884
No 464
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.22 E-value=0.11 Score=61.43 Aligned_cols=91 Identities=14% Similarity=0.204 Sum_probs=51.4
Q ss_pred eecEEEEeCCCccchH----HHHHhhhc---cCCEEEEEEecCCCCChhH-HHHHHHHHHcCCCEEEEEecCCCCCCChH
Q 001745 541 LQPCVFLDTPGHEAFG----AMRARGAR---VTDIAVIVVAADDGIRPQT-NEAIAHAKAAGVPIVIAINKIDKDGANPE 612 (1018)
Q Consensus 541 ~~~ItfIDTPGHE~F~----~~r~rg~~---~ADiVILVVDAddGv~~QT-~E~I~~ak~~gIPIIVVINKiDL~~a~~e 612 (1018)
.+.+.||||||...+. ......+. ..+-++||++++- .... .+.+..+...++ -=+++||+|-. ....
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~--~~~~l~~~~~~f~~~~~-~~vI~TKlDet-~~~G 374 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATT--KYEDLKDIYKHFSRLPL-DGLIFTKLDET-SSLG 374 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCC--CHHHHHHHHHHhCCCCC-CEEEEeccccc-cccc
Confidence 4679999999964432 11122222 2346788888764 2222 333344443332 35789999973 3444
Q ss_pred HHHHHHHhcCCCCCCCCCCCcEEEEecCCCCChH
Q 001745 613 RVMQELSSIGLMPEDWGGDIPMVQISALKGEKVD 646 (1018)
Q Consensus 613 rv~~eL~e~gl~~e~~g~~vpiVeISAktGeGId 646 (1018)
.+...+...+ .|+..++ +|++|.
T Consensus 375 ~i~~~~~~~~---------lPv~yit--~Gq~Vp 397 (424)
T PRK05703 375 SILSLLIESG---------LPISYLT--NGQRVP 397 (424)
T ss_pred HHHHHHHHHC---------CCEEEEe--CCCCCh
Confidence 5666666655 3455543 678873
No 465
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.17 E-value=0.012 Score=61.11 Aligned_cols=41 Identities=22% Similarity=0.281 Sum_probs=33.2
Q ss_pred CEEEEEEecCCCCChhHHHHHHH--HHHcCCCEEEEEecCCCC
Q 001745 567 DIAVIVVAADDGIRPQTNEAIAH--AKAAGVPIVIAINKIDKD 607 (1018)
Q Consensus 567 DiVILVVDAddGv~~QT~E~I~~--ak~~gIPIIVVINKiDL~ 607 (1018)
|++++|+|+.+.......+..+. ++..+.|+|+++||+|+.
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~ 43 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLV 43 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcC
Confidence 89999999998776666666555 445678999999999994
No 466
>PRK05433 GTP-binding protein LepA; Provisional
Probab=96.12 E-value=0.15 Score=62.71 Aligned_cols=178 Identities=22% Similarity=0.256 Sum_probs=105.7
Q ss_pred cCCCccHHHHHHHHHhCCCCCeEEEEEEcccC--CCCHhhHHHHHhcC-CEEEEec-CCCCh-h----HHhHHHhcCce-
Q 001745 807 VDVQGSIEAVRQALQVLPQDNVTLKFLLQATG--DISASDVDLAVASK-AIILGFN-VKAPG-S----VKTYADNKGVE- 876 (1018)
Q Consensus 807 aDv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG--~ItesDV~lA~as~-aiIi~Fn-V~~~~-~----a~~~A~~~~V~- 876 (1018)
-|+-|..+-.......+..-+.-+-|+.+.-| .-|...+.++...+ .+|+.+| +.... . ..++.+..++.
T Consensus 79 iDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~~ 158 (600)
T PRK05433 79 IDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDVIGIDA 158 (600)
T ss_pred EECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHHHHhCCCc
Confidence 38888877654444455555666777776544 33444455555444 3566666 22211 1 13344444443
Q ss_pred --EEEe-----chHhHHHHHHHHHHhcccc-cceeeeeeEeEEEEEEe-ecCCceEEEEEEeeeeEeeCCcEEEeeCCEE
Q 001745 877 --IRLY-----RVIYDLIDDMRNAMEGLLE-TVEEQVPIGSAEVRAIF-SSGSGRVAGCMVSEGKLVKGCGIRVIRDGKT 947 (1018)
Q Consensus 877 --I~~~-----~IIY~Liddik~~~~~~l~-~~~~e~~~G~A~V~~vF-~~~~g~IaGc~V~~G~i~~~~~vrviR~g~v 947 (1018)
++.- .-|.+|++. +...++ |.....---.|-|-.++ ....|.|+-++|.+|.|+.|..+.++..|..
T Consensus 159 ~~vi~iSAktG~GI~~Ll~~----I~~~lp~P~~~~~~pl~~~Vfd~~~d~~~G~v~~~rV~sG~Lk~Gd~i~~~~~~~~ 234 (600)
T PRK05433 159 SDAVLVSAKTGIGIEEVLEA----IVERIPPPKGDPDAPLKALIFDSWYDNYRGVVVLVRVVDGTLKKGDKIKMMSTGKE 234 (600)
T ss_pred ceEEEEecCCCCCHHHHHHH----HHHhCccccCCCCCCceEEEEEEEecCCCceEEEEEEEcCEEecCCEEEEecCCce
Confidence 3322 224444444 444444 32211111123333333 3457999999999999999999999998875
Q ss_pred EEEEEEeeeecccccccccccCceeEEEEc---cCCCCCCCCEEE
Q 001745 948 VHVGVLDSLRRVKENVKEVNAGLECGVGAA---DYDDLEEGDIIE 989 (1018)
Q Consensus 948 i~~G~i~SLk~~k~dV~ev~~G~EcGi~i~---~f~d~~~GD~ie 989 (1018)
-..++|..+......+.++.+|+ +|..+. +..+++.||+|-
T Consensus 235 ~~V~~i~~~~~~~~~v~~~~aGd-Ig~i~~~ik~~~~~~~Gdtl~ 278 (600)
T PRK05433 235 YEVDEVGVFTPKMVPVDELSAGE-VGYIIAGIKDVRDARVGDTIT 278 (600)
T ss_pred EEEEEeeccCCCceECcEEcCCC-EEEEecccccccccCCCCEEE
Confidence 55566654444568899999999 776654 467899999994
No 467
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=96.09 E-value=0.0098 Score=61.43 Aligned_cols=127 Identities=25% Similarity=0.291 Sum_probs=65.4
Q ss_pred CEEEEEeCCCCCHHHHHHHHHc-----Ccc--cccccCCceee------eeeEEEEEe-------------------cCC
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRK-----TKV--AAAEAGGITQG------IGAYKVQVP-------------------VDG 539 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~-----~~v--~~~e~gGiTqd------Iga~~V~i~-------------------~dg 539 (1018)
|++.|.|--|+|||||++++.. .+. ...+.+.+..| .+...+.+. ...
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~ 80 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLRE 80 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHh
Confidence 6789999999999999999983 111 12222211100 011111111 011
Q ss_pred c--eecEEEEeCCCccchHHHH-----HhhhccCCEEEEEEecCCCCChhH--HHHHHHHHHcCCCEEEEEecCCCCCCC
Q 001745 540 K--LQPCVFLDTPGHEAFGAMR-----ARGARVTDIAVIVVAADDGIRPQT--NEAIAHAKAAGVPIVIAINKIDKDGAN 610 (1018)
Q Consensus 540 k--~~~ItfIDTPGHE~F~~~r-----~rg~~~ADiVILVVDAddGv~~QT--~E~I~~ak~~gIPIIVVINKiDL~~a~ 610 (1018)
. ...+.|+.|.|-.....+. ....-..+.+|.|+|+..-..... .....++..+ =++++||+|+....
T Consensus 81 ~~~~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~A---DvIvlnK~D~~~~~ 157 (178)
T PF02492_consen 81 YEERPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFA---DVIVLNKIDLVSDE 157 (178)
T ss_dssp CHGC-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT----SEEEEE-GGGHHHH
T ss_pred cCCCcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhc---CEEEEeccccCChh
Confidence 2 4578899999954444331 111244689999999965211111 1122222222 38899999995432
Q ss_pred --hHHHHHHHHhc
Q 001745 611 --PERVMQELSSI 621 (1018)
Q Consensus 611 --~erv~~eL~e~ 621 (1018)
.+++...+.+.
T Consensus 158 ~~i~~~~~~ir~l 170 (178)
T PF02492_consen 158 QKIERVREMIREL 170 (178)
T ss_dssp --HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 24555555543
No 468
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=95.99 E-value=0.043 Score=64.29 Aligned_cols=155 Identities=21% Similarity=0.322 Sum_probs=85.8
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCccc----------------ccccCCceeeee------eEEEEEec-CCceecEEEE
Q 001745 491 PPVLTIMGHVDHGKTTLLDHIRKTKVA----------------AAEAGGITQGIG------AYKVQVPV-DGKLQPCVFL 547 (1018)
Q Consensus 491 ~pkVaImGhvdvGKTTLLnrL~~~~v~----------------~~e~gGiTqdIg------a~~V~i~~-dgk~~~ItfI 547 (1018)
-..|+++|++-+|||||+.+|...-+. .....|-|+.-. ...+.+.+ ++-..++.++
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi 96 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI 96 (492)
T ss_pred ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence 357999999999999999998532111 011223332110 01122222 4556789999
Q ss_pred eCCC--------cc-----------------chHHHHHhhhc----c-CC-EEEEEEecCCC-C-----ChhHHHHHHHH
Q 001745 548 DTPG--------HE-----------------AFGAMRARGAR----V-TD-IAVIVVAADDG-I-----RPQTNEAIAHA 590 (1018)
Q Consensus 548 DTPG--------HE-----------------~F~~~r~rg~~----~-AD-iVILVVDAddG-v-----~~QT~E~I~~a 590 (1018)
||-| |+ -|..-..-|-+ . +- ++++--|.+=+ + .......++.+
T Consensus 97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL 176 (492)
T PF09547_consen 97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL 176 (492)
T ss_pred eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence 9977 21 13222222221 1 11 22222233211 1 12234567788
Q ss_pred HHcCCCEEEEEecCCCCCCChHHHHHHHHhcCCCCCCCCCCCcEEEEecCC--CCChHHHHHHHH
Q 001745 591 KAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALK--GEKVDDLLETIM 653 (1018)
Q Consensus 591 k~~gIPIIVVINKiDL~~a~~erv~~eL~e~gl~~e~~g~~vpiVeISAkt--GeGIdeLleaIl 653 (1018)
+..+.|+||++|=.+-......++..+|.+.- +++++++++.+ -+.|..+|+.++
T Consensus 177 k~igKPFvillNs~~P~s~et~~L~~eL~ekY--------~vpVlpvnc~~l~~~DI~~Il~~vL 233 (492)
T PF09547_consen 177 KEIGKPFVILLNSTKPYSEETQELAEELEEKY--------DVPVLPVNCEQLREEDITRILEEVL 233 (492)
T ss_pred HHhCCCEEEEEeCCCCCCHHHHHHHHHHHHHh--------CCcEEEeehHHcCHHHHHHHHHHHH
Confidence 89999999999998864444445555555421 47888888754 344556666554
No 469
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.96 E-value=0.059 Score=63.51 Aligned_cols=146 Identities=16% Similarity=0.161 Sum_probs=76.7
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCc-------cc--ccccCCc-----------eeeeeeEEEEE------ecCCceec
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTK-------VA--AAEAGGI-----------TQGIGAYKVQV------PVDGKLQP 543 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~-------v~--~~e~gGi-----------TqdIga~~V~i------~~dgk~~~ 543 (1018)
++.+++++|.+|+||||++..|.... +. ..+...+ ..++..+.... .....++.
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D 301 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSE 301 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCC
Confidence 45679999999999999999886321 10 0000000 00111111100 01113567
Q ss_pred EEEEeCCCccchHH----HHHhhhc-----cCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHH
Q 001745 544 CVFLDTPGHEAFGA----MRARGAR-----VTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERV 614 (1018)
Q Consensus 544 ItfIDTPGHE~F~~----~r~rg~~-----~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~erv 614 (1018)
+.||||||...... .+...+. ...-.+||+|++-+. .+..+.+......++ -=++++|.|-. ...-.+
T Consensus 302 ~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~-~~~~~~~~~f~~~~~-~glIlTKLDEt-~~~G~i 378 (432)
T PRK12724 302 LILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY-HHTLTVLKAYESLNY-RRILLTKLDEA-DFLGSF 378 (432)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH-HHHHHHHHHhcCCCC-CEEEEEcccCC-CCccHH
Confidence 89999999643221 1112121 234688999987542 123334444433333 35667999973 344556
Q ss_pred HHHHHhcCCCCCCCCCCCcEEEEecCCCCChHHHH
Q 001745 615 MQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLL 649 (1018)
Q Consensus 615 ~~eL~e~gl~~e~~g~~vpiVeISAktGeGIdeLl 649 (1018)
.......+ .|+..++ +|++|.+=+
T Consensus 379 l~i~~~~~---------lPI~ylt--~GQ~VPeDi 402 (432)
T PRK12724 379 LELADTYS---------KSFTYLS--VGQEVPFDI 402 (432)
T ss_pred HHHHHHHC---------CCEEEEe--cCCCCCCCH
Confidence 66665554 3555543 577776533
No 470
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=95.96 E-value=0.056 Score=49.16 Aligned_cols=74 Identities=18% Similarity=0.209 Sum_probs=59.8
Q ss_pred EEeec----CCceEEEEEEeeeeEeeCCcEEEeeCCEEEEEEEEeeee-cccccccccccCceeEEEEccCCCCCCCCEE
Q 001745 914 AIFSS----GSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLR-RVKENVKEVNAGLECGVGAADYDDLEEGDII 988 (1018)
Q Consensus 914 ~vF~~----~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~i~SLk-~~k~dV~ev~~G~EcGi~i~~f~d~~~GD~i 988 (1018)
.||+. ..|.++=|+|.+|+|++|..+.+++.++....++|-.+. ..+.++.++.+|.=|+| .+++++..||.|
T Consensus 4 ~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i--~gl~~~~~Gdtl 81 (83)
T cd04092 4 LAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTGKKERISRLLQPFADQYQEIPSLSAGNIGVI--TGLKQTRTGDTL 81 (83)
T ss_pred EEEecccCCCCCeEEEEEEecCEECCCCEEEECCCCCEEEeeEEEEEECCCceECCeeCCCCEEEE--ECCCCcccCCEE
Confidence 56763 358899999999999999999988877544556666664 46688999999998886 678999999998
Q ss_pred E
Q 001745 989 E 989 (1018)
Q Consensus 989 e 989 (1018)
-
T Consensus 82 ~ 82 (83)
T cd04092 82 V 82 (83)
T ss_pred e
Confidence 3
No 471
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.96 E-value=0.02 Score=62.39 Aligned_cols=63 Identities=25% Similarity=0.374 Sum_probs=45.1
Q ss_pred ecEEEEeC-CCccchHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcC-CCEEEEEecCCCC
Q 001745 542 QPCVFLDT-PGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAG-VPIVIAINKIDKD 607 (1018)
Q Consensus 542 ~~ItfIDT-PGHE~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~g-IPIIVVINKiDL~ 607 (1018)
+.+.++|| +|.|.|.. .....+|.+|+|+|.+-.-..-...+-++....+ .++.+++||+|-.
T Consensus 134 ~e~VivDtEAGiEHfgR---g~~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 134 YEVVIVDTEAGIEHFGR---GTIEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred CcEEEEecccchhhhcc---ccccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 45788898 57777753 3347899999999987533333344445566778 6799999999963
No 472
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.94 E-value=0.074 Score=62.10 Aligned_cols=147 Identities=15% Similarity=0.192 Sum_probs=76.9
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcC----------ccc--cccc---CCce--------eeeeeEEEEEe-------cC
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKT----------KVA--AAEA---GGIT--------QGIGAYKVQVP-------VD 538 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~----------~v~--~~e~---gGiT--------qdIga~~V~i~-------~d 538 (1018)
.++.+|+++|..|+||||.+..|... ++. ..+. +... .++.+...... -.
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 35678999999999999999877521 111 0000 0000 01111111100 01
Q ss_pred CceecEEEEeCCCccchHHH----HHhhhcc--CC-EEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCCh
Q 001745 539 GKLQPCVFLDTPGHEAFGAM----RARGARV--TD-IAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANP 611 (1018)
Q Consensus 539 gk~~~ItfIDTPGHE~F~~~----r~rg~~~--AD-iVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~ 611 (1018)
..++.+.|+||+|......+ ....+.. .+ -.+||+|++.+. ....+.++.....+ +-=++++|.|-. ...
T Consensus 252 ~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~-~~~~~~~~~~~~~~-~~~~I~TKlDet-~~~ 328 (388)
T PRK12723 252 SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT-SDVKEIFHQFSPFS-YKTVIFTKLDET-TCV 328 (388)
T ss_pred hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH-HHHHHHHHHhcCCC-CCEEEEEeccCC-Ccc
Confidence 13567999999995433221 1222222 23 588999998752 12223333333222 245678999973 344
Q ss_pred HHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCCh-HHHH
Q 001745 612 ERVMQELSSIGLMPEDWGGDIPMVQISALKGEKV-DDLL 649 (1018)
Q Consensus 612 erv~~eL~e~gl~~e~~g~~vpiVeISAktGeGI-deLl 649 (1018)
-.+...+...+ .|+..++ +|++| ++|.
T Consensus 329 G~~l~~~~~~~---------~Pi~yit--~Gq~vPeDl~ 356 (388)
T PRK12723 329 GNLISLIYEMR---------KEVSYVT--DGQIVPHNIS 356 (388)
T ss_pred hHHHHHHHHHC---------CCEEEEe--CCCCChhhhh
Confidence 45555555544 3455543 67888 4443
No 473
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=95.93 E-value=0.058 Score=48.79 Aligned_cols=74 Identities=28% Similarity=0.342 Sum_probs=59.1
Q ss_pred EEeec----CCceEEEEEEeeeeEeeCCcEEEeeCCEEEEEEEEeeeecc-cccccccccCceeEEEEccCCCCCCCCEE
Q 001745 914 AIFSS----GSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRV-KENVKEVNAGLECGVGAADYDDLEEGDII 988 (1018)
Q Consensus 914 ~vF~~----~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~i~SLk~~-k~dV~ev~~G~EcGi~i~~f~d~~~GD~i 988 (1018)
.||+. ..|.++=|+|.+|+|++|..+++++.+.....++|--+.-. +.++.++.+|+=|+| .+.+++..||.|
T Consensus 4 ~Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i--~g~~~~~~Gdtl 81 (83)
T cd04088 4 LVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKGKKERVGRLLRMHGKKQEEVEEAGAGDIGAV--AGLKDTATGDTL 81 (83)
T ss_pred EEEEcccCCCCceEEEEEEecCEEcCCCEEEECCCCcEEEeeEEEEEcCCCceECCEeCCCCEEEE--ECCCCCccCCEe
Confidence 46663 46899999999999999999999987754444555555444 688999999999988 678889999998
Q ss_pred E
Q 001745 989 E 989 (1018)
Q Consensus 989 e 989 (1018)
-
T Consensus 82 ~ 82 (83)
T cd04088 82 C 82 (83)
T ss_pred e
Confidence 3
No 474
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=95.91 E-value=0.056 Score=61.66 Aligned_cols=148 Identities=23% Similarity=0.232 Sum_probs=82.4
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcc------cccccCCceeee-e------eEEEEEe-----c--------------C-
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKV------AAAEAGGITQGI-G------AYKVQVP-----V--------------D- 538 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v------~~~e~gGiTqdI-g------a~~V~i~-----~--------------d- 538 (1018)
|+.+|-|-=|+||||||+.|..... ...|.+.+.+|- . ...+++. + .
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~ 81 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRR 81 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhc
Confidence 6788999999999999999985432 233444333330 0 0011110 0 0
Q ss_pred CceecEEEEeCCCccchHHHHH--------hhhccCCEEEEEEecCCCCChhH---HHHHHHHHHcCCCEEEEEecCCCC
Q 001745 539 GKLQPCVFLDTPGHEAFGAMRA--------RGARVTDIAVIVVAADDGIRPQT---NEAIAHAKAAGVPIVIAINKIDKD 607 (1018)
Q Consensus 539 gk~~~ItfIDTPGHE~F~~~r~--------rg~~~ADiVILVVDAddGv~~QT---~E~I~~ak~~gIPIIVVINKiDL~ 607 (1018)
.......+|.|-|-..=..... ...-..|.+|-|||+........ .....++..+ =+|++||+|+.
T Consensus 82 ~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A---D~ivlNK~Dlv 158 (323)
T COG0523 82 RDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA---DVIVLNKTDLV 158 (323)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC---cEEEEecccCC
Confidence 1225678999999543222211 12234588999999987443222 2223333333 38999999997
Q ss_pred CCCh-HHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCChHHHHH
Q 001745 608 GANP-ERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDLLE 650 (1018)
Q Consensus 608 ~a~~-erv~~eL~e~gl~~e~~g~~vpiVeISAktGeGIdeLle 650 (1018)
+... +.+...+..++ ...+++.+|. .+....+++.
T Consensus 159 ~~~~l~~l~~~l~~ln-------p~A~i~~~~~-~~~~~~~ll~ 194 (323)
T COG0523 159 DAEELEALEARLRKLN-------PRARIIETSY-GDVDLAELLD 194 (323)
T ss_pred CHHHHHHHHHHHHHhC-------CCCeEEEccc-cCCCHHHhhc
Confidence 5432 23334444432 3467888876 4444544443
No 475
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.90 E-value=0.16 Score=58.13 Aligned_cols=25 Identities=32% Similarity=0.500 Sum_probs=21.9
Q ss_pred CCCCCEEEEEeCCCCCHHHHHHHHH
Q 001745 488 EDRPPVLTIMGHVDHGKTTLLDHIR 512 (1018)
Q Consensus 488 ~~r~pkVaImGhvdvGKTTLLnrL~ 512 (1018)
..+|.+|.++|-.|+||||-+..|.
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA 160 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLA 160 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHH
Confidence 4568899999999999999998774
No 476
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=95.71 E-value=0.33 Score=59.71 Aligned_cols=78 Identities=23% Similarity=0.316 Sum_probs=63.0
Q ss_pred eEEEEEEee-cCCceEEEEEEeeeeEeeCCcEEEeeCCEEEEEEEEeeeecc----cccccccccCceeEEEEccCCCCC
Q 001745 909 SAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRV----KENVKEVNAGLECGVGAADYDDLE 983 (1018)
Q Consensus 909 ~A~V~~vF~-~~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~i~SLk~~----k~dV~ev~~G~EcGi~i~~f~d~~ 983 (1018)
.+.|-.+|. ...|.++-++|.+|+|+.|..+.+.+.+.....++|.+|..+ +..|.++.+|.=|+|. +..+++
T Consensus 202 ~~~V~~i~~d~~~Grv~~gRV~sG~lk~G~~V~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~--gl~~i~ 279 (594)
T TIGR01394 202 QMLVTNLDYDEYLGRIAIGRVHRGTVKKGQQVALMKRDGTIENGRISKLLGFEGLERVEIDEAGAGDIVAVA--GLEDIN 279 (594)
T ss_pred EEEEEEEEeeCCCceEEEEEEEeCEEccCCEEEEecCCCceeEEEEEEEEEccCCCceECCEECCCCEEEEe--CCcccC
Confidence 344455554 357999999999999999999999875322345788888765 7899999999999875 889999
Q ss_pred CCCEE
Q 001745 984 EGDII 988 (1018)
Q Consensus 984 ~GD~i 988 (1018)
.||+|
T Consensus 280 ~Gdtl 284 (594)
T TIGR01394 280 IGETI 284 (594)
T ss_pred CCCEE
Confidence 99999
No 477
>COG1162 Predicted GTPases [General function prediction only]
Probab=95.62 E-value=0.062 Score=60.64 Aligned_cols=81 Identities=30% Similarity=0.410 Sum_probs=55.3
Q ss_pred ccCCEEEEEEecCCC-CChhHH-HHHHHHHHcCCCEEEEEecCCCCCCChHHH---HHHHHhcCCCCCCCCCCCcEEEEe
Q 001745 564 RVTDIAVIVVAADDG-IRPQTN-EAIAHAKAAGVPIVIAINKIDKDGANPERV---MQELSSIGLMPEDWGGDIPMVQIS 638 (1018)
Q Consensus 564 ~~ADiVILVVDAddG-v~~QT~-E~I~~ak~~gIPIIVVINKiDL~~a~~erv---~~eL~e~gl~~e~~g~~vpiVeIS 638 (1018)
.+.|-+|+|+.+.++ +....+ ..+-.+...++..||++||+||........ ....... .++++.+|
T Consensus 78 ~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~---------gy~v~~~s 148 (301)
T COG1162 78 ANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDI---------GYPVLFVS 148 (301)
T ss_pred cccceEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcchHHHHHHHHHHHHhC---------CeeEEEec
Confidence 336777777777664 344433 445566778999999999999965433332 2222223 36899999
Q ss_pred cCCCCChHHHHHHHH
Q 001745 639 ALKGEKVDDLLETIM 653 (1018)
Q Consensus 639 AktGeGIdeLleaIl 653 (1018)
++++.|+++|.+.+.
T Consensus 149 ~~~~~~~~~l~~~l~ 163 (301)
T COG1162 149 AKNGDGLEELAELLA 163 (301)
T ss_pred CcCcccHHHHHHHhc
Confidence 999999999998773
No 478
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.58 E-value=0.051 Score=63.34 Aligned_cols=143 Identities=13% Similarity=0.293 Sum_probs=75.2
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcC------ccc--ccc---cCCce--------eeeeeEEEEEe---------cC-C
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKT------KVA--AAE---AGGIT--------QGIGAYKVQVP---------VD-G 539 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~------~v~--~~e---~gGiT--------qdIga~~V~i~---------~d-g 539 (1018)
.++.+++++|+.|+||||++..|... ++. ..+ .++.. .++.++...-. .. .
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~ 283 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYV 283 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhc
Confidence 45778999999999999999987521 111 000 00000 01111111000 00 0
Q ss_pred ceecEEEEeCCCccchHHH----HHhhh--ccCCEEEEEEecCCCCChhH-HHHHHHHHHcCCC-EEEEEecCCCCCCCh
Q 001745 540 KLQPCVFLDTPGHEAFGAM----RARGA--RVTDIAVIVVAADDGIRPQT-NEAIAHAKAAGVP-IVIAINKIDKDGANP 611 (1018)
Q Consensus 540 k~~~ItfIDTPGHE~F~~~----r~rg~--~~ADiVILVVDAddGv~~QT-~E~I~~ak~~gIP-IIVVINKiDL~~a~~ 611 (1018)
..+.+.||||||...+... ..... ...|.++||+++. ...+. .+.+.... .++ --+++||.|-. ...
T Consensus 284 ~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag--~~~~d~~~i~~~f~--~l~i~glI~TKLDET-~~~ 358 (407)
T PRK12726 284 NCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG--MKSADVMTILPKLA--EIPIDGFIITKMDET-TRI 358 (407)
T ss_pred CCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc--ccHHHHHHHHHhcC--cCCCCEEEEEcccCC-CCc
Confidence 2468999999997433222 22222 2346777887763 23322 23333322 233 45668999974 345
Q ss_pred HHHHHHHHhcCCCCCCCCCCCcEEEEecCCCCChHH
Q 001745 612 ERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDD 647 (1018)
Q Consensus 612 erv~~eL~e~gl~~e~~g~~vpiVeISAktGeGIde 647 (1018)
-.+.......+ .|+..+| +|++|.+
T Consensus 359 G~~Lsv~~~tg---------lPIsylt--~GQ~Vpd 383 (407)
T PRK12726 359 GDLYTVMQETN---------LPVLYMT--DGQNITE 383 (407)
T ss_pred cHHHHHHHHHC---------CCEEEEe--cCCCCCc
Confidence 55666555554 3455543 5777775
No 479
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=95.53 E-value=0.3 Score=57.46 Aligned_cols=179 Identities=18% Similarity=0.217 Sum_probs=116.3
Q ss_pred cCCCccHHHHHHHHHhCCCCCeEEEEEEcccCCCCHhhHHHHHh------cCCEEEEecCCCCh------hHHhHHHhc-
Q 001745 807 VDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVA------SKAIILGFNVKAPG------SVKTYADNK- 873 (1018)
Q Consensus 807 aDv~GSlEAi~~~L~~l~~~~v~i~ii~~~VG~ItesDV~lA~a------s~aiIi~FnV~~~~------~a~~~A~~~- 873 (1018)
-|+.|=-+=|...+..+..-+.-+=|+...=|. +...-+...+ .+++|+.=...-.. .++++-...
T Consensus 55 IDvpgh~~~i~~miag~~~~d~alLvV~~deGl-~~qtgEhL~iLdllgi~~giivltk~D~~d~~r~e~~i~~Il~~l~ 133 (447)
T COG3276 55 IDVPGHPDFISNLLAGLGGIDYALLVVAADEGL-MAQTGEHLLILDLLGIKNGIIVLTKADRVDEARIEQKIKQILADLS 133 (447)
T ss_pred eeCCCcHHHHHHHHhhhcCCceEEEEEeCccCc-chhhHHHHHHHHhcCCCceEEEEeccccccHHHHHHHHHHHHhhcc
Confidence 366666666666666665555555555554332 2222222222 23444443333222 112211111
Q ss_pred --Cce-EEEechHhHHHHHHHHHHhcccc-cceeeeeeEeEEEEEEeec-CCceEEEEEEeeeeEeeCCcEEEeeCCEEE
Q 001745 874 --GVE-IRLYRVIYDLIDDMRNAMEGLLE-TVEEQVPIGSAEVRAIFSS-GSGRVAGCMVSEGKLVKGCGIRVIRDGKTV 948 (1018)
Q Consensus 874 --~V~-I~~~~IIY~Liddik~~~~~~l~-~~~~e~~~G~A~V~~vF~~-~~g~IaGc~V~~G~i~~~~~vrviR~g~vi 948 (1018)
..+ +.+.-...+=||+++++|..++. ++..+.-....-|-.+|+. +.|+|.=-.|.+|+++.|..+++.--|+
T Consensus 134 l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~~~e~d~~~~fri~IDraFtVKGvGTVVtGtv~sG~V~v~D~L~l~p~~k-- 211 (447)
T COG3276 134 LANAKIFKTSAKTGRGIEELKNELIDLLEEIERDEQKPFRIAIDRAFTVKGVGTVVTGTVLSGEVKVGDKLYLSPINK-- 211 (447)
T ss_pred cccccccccccccCCCHHHHHHHHHHhhhhhhhccCCceEEEEeeEEEeccccEEEEeEEeeeeEEECCEEEEecCCC--
Confidence 111 44445567778999999999885 3444444556667799994 6898888889999999999998875554
Q ss_pred EEEEEeeeecccccccccccCceeEEEEccC--CCCCCCCEEE
Q 001745 949 HVGVLDSLRRVKENVKEVNAGLECGVGAADY--DDLEEGDIIE 989 (1018)
Q Consensus 949 ~~G~i~SLk~~k~dV~ev~~G~EcGi~i~~f--~d~~~GD~ie 989 (1018)
+=+|.||+.+..|++++.+|+-||+.+.+- .+++-||.|-
T Consensus 212 -~v~VRsIq~~d~d~~~a~AG~RVgLaL~~v~~eei~RG~~L~ 253 (447)
T COG3276 212 -EVRVRSIQAHDVDVEEAKAGQRVGLALKGVEKEEIERGDWLL 253 (447)
T ss_pred -eEEEEeeeecCcchhhccccceeeeecCCCCHHHhhcccEec
Confidence 337999999999999999999999999984 4788887764
No 480
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=95.52 E-value=0.1 Score=59.86 Aligned_cols=24 Identities=38% Similarity=0.677 Sum_probs=21.6
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHc
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRK 513 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~ 513 (1018)
+.|+..|.|--|+|||||++++..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~ 26 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQ 26 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHh
Confidence 557899999999999999999974
No 481
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.48 E-value=0.075 Score=58.24 Aligned_cols=150 Identities=17% Similarity=0.227 Sum_probs=85.4
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHcCccc-----ccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHH---HHHhh
Q 001745 491 PPVLTIMGHVDHGKTTLLDHIRKTKVA-----AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGA---MRARG 562 (1018)
Q Consensus 491 ~pkVaImGhvdvGKTTLLnrL~~~~v~-----~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~---~r~rg 562 (1018)
.|.|.+||+-.+||||+-....+..-. ......+|++ ++ .+.-..+.+||.|||-.|-. -..+-
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d----~i----s~sfinf~v~dfPGQ~~~Fd~s~D~e~i 98 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRD----HI----SNSFINFQVWDFPGQMDFFDPSFDYEMI 98 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHh----hh----hhhhcceEEeecCCccccCCCccCHHHH
Confidence 366999999999999987655432111 1111223332 11 11234689999999865432 12344
Q ss_pred hccCCEEEEEEecCCCCChh-HHHHHHHHHHc----CCCEEEEEecCCCCCCC---------hHHHHHHHHhcCCCCCCC
Q 001745 563 ARVTDIAVIVVAADDGIRPQ-TNEAIAHAKAA----GVPIVIAINKIDKDGAN---------PERVMQELSSIGLMPEDW 628 (1018)
Q Consensus 563 ~~~ADiVILVVDAddGv~~Q-T~E~I~~ak~~----gIPIIVVINKiDL~~a~---------~erv~~eL~e~gl~~e~~ 628 (1018)
++.+-+.|+|+|+.+..+.. +.-++...+.. ++.+=|.+.|.|-...+ .++...++...++..-
T Consensus 99 F~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v-- 176 (347)
T KOG3887|consen 99 FRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKV-- 176 (347)
T ss_pred HhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccc--
Confidence 58889999999998744332 22233333333 45688999999953211 1233445555554321
Q ss_pred CCCCcEEEEecCCCCChHHHHHHHH
Q 001745 629 GGDIPMVQISALKGEKVDDLLETIM 653 (1018)
Q Consensus 629 g~~vpiVeISAktGeGIdeLleaIl 653 (1018)
.+.|.-+|-.. ..|-+.|..+.
T Consensus 177 --~vsf~LTSIyD-HSIfEAFSkvV 198 (347)
T KOG3887|consen 177 --QVSFYLTSIYD-HSIFEAFSKVV 198 (347)
T ss_pred --eEEEEEeeecc-hHHHHHHHHHH
Confidence 24566666554 45666555543
No 482
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.47 E-value=0.027 Score=62.59 Aligned_cols=133 Identities=19% Similarity=0.222 Sum_probs=76.2
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccccCCc--eeeeeeEEEEEecCCceecEEEEeCCCc-------c-------
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGI--TQGIGAYKVQVPVDGKLQPCVFLDTPGH-------E------- 553 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGi--TqdIga~~V~i~~dgk~~~ItfIDTPGH-------E------- 553 (1018)
-.++|..+|..|-|||||++.|.+.++...+..-. +..+.+.+..+.-.+-..+++++||.|. +
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVd 120 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVD 120 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHH
Confidence 34689999999999999999999888765443211 1222222222222344567999999991 1
Q ss_pred ----chHHHHH------h---hh--ccCCEEEEEEecCC-CCChhHHHHHHHHHHcCCCEEEEEecCCCCCCC-h----H
Q 001745 554 ----AFGAMRA------R---GA--RVTDIAVIVVAADD-GIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN-P----E 612 (1018)
Q Consensus 554 ----~F~~~r~------r---g~--~~ADiVILVVDAdd-Gv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~-~----e 612 (1018)
.|..... | .+ ...+++++.|..+. ++..-+.-.++.+. ..+.||-++-|.|....+ . .
T Consensus 121 yidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Ld-skVNIIPvIAKaDtisK~eL~~FK~ 199 (406)
T KOG3859|consen 121 YIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLD-SKVNIIPVIAKADTISKEELKRFKI 199 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHh-hhhhhHHHHHHhhhhhHHHHHHHHH
Confidence 1111111 1 12 34578888887653 34333333333332 356788889999974322 1 2
Q ss_pred HHHHHHHhcCC
Q 001745 613 RVMQELSSIGL 623 (1018)
Q Consensus 613 rv~~eL~e~gl 623 (1018)
+++.+|...++
T Consensus 200 kimsEL~sngv 210 (406)
T KOG3859|consen 200 KIMSELVSNGV 210 (406)
T ss_pred HHHHHHHhcCc
Confidence 34455555544
No 483
>KOG2484 consensus GTPase [General function prediction only]
Probab=95.45 E-value=0.011 Score=68.30 Aligned_cols=59 Identities=22% Similarity=0.452 Sum_probs=45.2
Q ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHcCcc-cccccCCceeeeeeEEEEEecCCceecEEEEeCCCc
Q 001745 487 LEDRPPVLTIMGHVDHGKTTLLDHIRKTKV-AAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH 552 (1018)
Q Consensus 487 l~~r~pkVaImGhvdvGKTTLLnrL~~~~v-~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGH 552 (1018)
..++...|+|+|-||+||||++|.|...+. .++..+|+|..+.- +.+ + ..|.|+|.||.
T Consensus 248 ~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqe--V~L--d---k~i~llDsPgi 307 (435)
T KOG2484|consen 248 ELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQE--VKL--D---KKIRLLDSPGI 307 (435)
T ss_pred ccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhh--eec--c---CCceeccCCce
Confidence 356788999999999999999999987665 46777888865422 222 2 35999999994
No 484
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=95.40 E-value=0.0074 Score=69.42 Aligned_cols=58 Identities=22% Similarity=0.389 Sum_probs=41.8
Q ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHcCccc-ccccCCceeeeeeEEEEEecCCceecEEEEeCCCc
Q 001745 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTKVA-AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGH 552 (1018)
Q Consensus 488 ~~r~pkVaImGhvdvGKTTLLnrL~~~~v~-~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGH 552 (1018)
.+..+-|+++|-||+||||++|.|+..++. +...+|-|.-..+.+ --.+|.+|||||.
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYIt-------LmkrIfLIDcPGv 362 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYIT-------LMKRIFLIDCPGV 362 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHH-------HHhceeEecCCCc
Confidence 345677999999999999999999987765 445666663211111 1246999999995
No 485
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.39 E-value=0.39 Score=53.66 Aligned_cols=146 Identities=17% Similarity=0.210 Sum_probs=77.5
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCc------cc--ccccC-----------CceeeeeeEEEEEe---------c-CC
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKTK------VA--AAEAG-----------GITQGIGAYKVQVP---------V-DG 539 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~~------v~--~~e~g-----------GiTqdIga~~V~i~---------~-dg 539 (1018)
.++.+++++|.+|+|||||+..|.... +. ..... .-..++..+...-. . ..
T Consensus 73 ~~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 152 (270)
T PRK06731 73 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 152 (270)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhc
Confidence 356899999999999999998774321 10 00000 00011111110000 0 11
Q ss_pred ceecEEEEeCCCccchHHH----HHhh--hccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChHH
Q 001745 540 KLQPCVFLDTPGHEAFGAM----RARG--ARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPER 613 (1018)
Q Consensus 540 k~~~ItfIDTPGHE~F~~~----r~rg--~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~er 613 (1018)
..+.+.|+||||...+... +... ....|-++||+|++.. ..+..+.++.....++ -=++++|.|-.. ..-.
T Consensus 153 ~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~-~~d~~~~~~~f~~~~~-~~~I~TKlDet~-~~G~ 229 (270)
T PRK06731 153 ARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK-SKDMIEIITNFKDIHI-DGIVFTKFDETA-SSGE 229 (270)
T ss_pred CCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC-HHHHHHHHHHhCCCCC-CEEEEEeecCCC-CccH
Confidence 2467999999996533221 1111 2345778999998631 1223344444433222 356689999743 3445
Q ss_pred HHHHHHhcCCCCCCCCCCCcEEEEecCCCCChHHH
Q 001745 614 VMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDL 648 (1018)
Q Consensus 614 v~~eL~e~gl~~e~~g~~vpiVeISAktGeGIdeL 648 (1018)
+.......+ .|+..++ +|+++.+=
T Consensus 230 ~l~~~~~~~---------~Pi~~it--~Gq~vp~d 253 (270)
T PRK06731 230 LLKIPAVSS---------APIVLMT--DGQDVKKN 253 (270)
T ss_pred HHHHHHHHC---------cCEEEEe--CCCCCCcc
Confidence 555555543 4555553 67777753
No 486
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=95.25 E-value=0.095 Score=52.05 Aligned_cols=104 Identities=11% Similarity=0.072 Sum_probs=60.6
Q ss_pred EEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEEEEe
Q 001745 495 TIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVA 574 (1018)
Q Consensus 495 aImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVILVVD 574 (1018)
..-|..|+||||+.-.+...-.. .+-.+.=++ .......-.+.+.++|||+.. .......+..+|.++++++
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~---~~~~~~~vd---~D~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~ 75 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAK---LGKRVLLLD---ADLGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTT 75 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHH---CCCcEEEEE---CCCCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcC
Confidence 45678999999997766432110 010010000 000000112579999999853 3334466799999999998
Q ss_pred cCCCCChhHHHHHHHHHHc--CCCEEEEEecCCC
Q 001745 575 ADDGIRPQTNEAIAHAKAA--GVPIVIAINKIDK 606 (1018)
Q Consensus 575 AddGv~~QT~E~I~~ak~~--gIPIIVVINKiDL 606 (1018)
.+......+...++.+... ..++.+++|+++.
T Consensus 76 ~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~ 109 (139)
T cd02038 76 PEPTSITDAYALIKKLAKQLRVLNFRVVVNRAES 109 (139)
T ss_pred CChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 8754334445555555332 3468899999985
No 487
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=95.25 E-value=0.11 Score=48.42 Aligned_cols=71 Identities=17% Similarity=0.265 Sum_probs=44.6
Q ss_pred EEEEe-CCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEEE
Q 001745 494 LTIMG-HVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIV 572 (1018)
Q Consensus 494 VaImG-hvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVILV 572 (1018)
|+|+| ..|+||||+.-.|...-.. .+. ....+. .+.. +.+.++|||+.... .....+..+|.+|++
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~----~~~----~vl~~d--~d~~-~d~viiD~p~~~~~--~~~~~l~~ad~viv~ 68 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR----RGK----RVLLID--LDPQ-YDYIIIDTPPSLGL--LTRNALAAADLVLIP 68 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh----CCC----cEEEEe--CCCC-CCEEEEeCcCCCCH--HHHHHHHHCCEEEEe
Confidence 56677 7799999998776542211 111 111122 2222 67999999996432 233666889999999
Q ss_pred EecCC
Q 001745 573 VAADD 577 (1018)
Q Consensus 573 VDAdd 577 (1018)
++.+.
T Consensus 69 ~~~~~ 73 (104)
T cd02042 69 VQPSP 73 (104)
T ss_pred ccCCH
Confidence 98764
No 488
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.01 E-value=0.037 Score=71.86 Aligned_cols=108 Identities=23% Similarity=0.249 Sum_probs=62.6
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCcccccc--------cCCceeeeeeEEEEEecCCceecEEEEeCCC----cc----
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVAAAE--------AGGITQGIGAYKVQVPVDGKLQPCVFLDTPG----HE---- 553 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~v~~~e--------~gGiTqdIga~~V~i~~dgk~~~ItfIDTPG----HE---- 553 (1018)
.-|=-.|||.+|+||||++..--. ++...+ ..| |++.+ .-+ .-.-.+|||.| |+
T Consensus 124 eLPWy~viG~pgsGKTtal~~sgl-~Fpl~~~~~~~~~~~~g-T~~cd-----wwf---~deaVlIDtaGry~~q~s~~~ 193 (1188)
T COG3523 124 ELPWYMVIGPPGSGKTTALLNSGL-QFPLAEQMGALGLAGPG-TRNCD-----WWF---TDEAVLIDTAGRYITQDSADE 193 (1188)
T ss_pred cCCceEEecCCCCCcchHHhcccc-cCcchhhhccccccCCC-CcccC-----ccc---ccceEEEcCCcceecccCcch
Confidence 345578999999999999965321 222111 112 44322 111 12468999999 31
Q ss_pred chHHHH---------HhhhccCCEEEEEEecCCCCChhHHHHHHH-------------HHHcCCCEEEEEecCCCC
Q 001745 554 AFGAMR---------ARGARVTDIAVIVVAADDGIRPQTNEAIAH-------------AKAAGVPIVIAINKIDKD 607 (1018)
Q Consensus 554 ~F~~~r---------~rg~~~ADiVILVVDAddGv~~QT~E~I~~-------------ak~~gIPIIVVINKiDL~ 607 (1018)
.-...| .|..+-.|+||+.+|+.+-......+...+ ......|+.|++||+|+.
T Consensus 194 ~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll 269 (1188)
T COG3523 194 VDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLL 269 (1188)
T ss_pred hhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccccc
Confidence 111122 234466899999999987433222222111 112468999999999984
No 489
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=94.95 E-value=0.75 Score=56.65 Aligned_cols=89 Identities=24% Similarity=0.241 Sum_probs=70.6
Q ss_pred eEeEEEEEEee-cCCceEEEEEEeeeeEeeCCcEEEeeCCEEEEEEEEeeeec-ccccccccccCceeEEEEccCCCC-C
Q 001745 907 IGSAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRR-VKENVKEVNAGLECGVGAADYDDL-E 983 (1018)
Q Consensus 907 ~G~A~V~~vF~-~~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~i~SLk~-~k~dV~ev~~G~EcGi~i~~f~d~-~ 983 (1018)
-..+.|..+|. .+.|.++-+.|.+|+++.|..+.+.. ..|+|.+|.. ..+.|+++.+|+=|.|. +|++. .
T Consensus 261 ~~~~~V~ev~~~~g~G~v~~~~V~~GtL~~Gd~iv~~~-----~~~kVr~l~~~~g~~v~~a~~g~~v~i~--Gl~~~p~ 333 (587)
T TIGR00487 261 QASGVVIEAQLDKGRGPVATVLVQSGTLRVGDIVVVGA-----AYGRVRAMIDENGKSVKEAGPSKPVEIL--GLSDVPA 333 (587)
T ss_pred CceeEEEEEEEeCCCcEEEEEEEEeCEEeCCCEEEECC-----CccEEEEEECCCCCCCCEECCCCEEEEe--CCCCCCC
Confidence 34566778886 46899999999999999999876532 2589999987 66899999999877766 88887 9
Q ss_pred CCCEEEEEEEEEeehhHHH
Q 001745 984 EGDIIEAFNSIQRKRTLEE 1002 (1018)
Q Consensus 984 ~GD~ie~y~~~~~~~~l~~ 1002 (1018)
.||.+.+++..+..+.+.+
T Consensus 334 aGd~~~~~~~e~~a~~~~~ 352 (587)
T TIGR00487 334 AGDEFIVFKDEKDARLVAE 352 (587)
T ss_pred CCCEEEEcCCHHHHHHHHH
Confidence 9999998876665554433
No 490
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=94.69 E-value=0.057 Score=62.55 Aligned_cols=80 Identities=18% Similarity=0.226 Sum_probs=54.9
Q ss_pred ceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEEEEecCC--------CCChhHHHHHHHHHH---
Q 001745 524 ITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADD--------GIRPQTNEAIAHAKA--- 592 (1018)
Q Consensus 524 iTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVILVVDAdd--------Gv~~QT~E~I~~ak~--- 592 (1018)
.|.++..+.+.+. ....+.|+|+.|+..-+.-|...+..++++|+|++.++ .......+.+.....
T Consensus 221 ~T~Gi~e~~f~~~---~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~ 297 (389)
T PF00503_consen 221 KTTGITEIDFNFS---GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICN 297 (389)
T ss_dssp --SSEEEEEEEE----TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHT
T ss_pred CCCCeeEEEEEee---cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHh
Confidence 3444443343321 44679999999998888999999999999999999875 122333444443332
Q ss_pred ----cCCCEEEEEecCCC
Q 001745 593 ----AGVPIVIAINKIDK 606 (1018)
Q Consensus 593 ----~gIPIIVVINKiDL 606 (1018)
.+.|+||++||+|+
T Consensus 298 ~~~~~~~~iil~lnK~D~ 315 (389)
T PF00503_consen 298 NPWFKNTPIILFLNKIDL 315 (389)
T ss_dssp SGGGTTSEEEEEEE-HHH
T ss_pred CcccccCceEEeeecHHH
Confidence 36899999999997
No 491
>COG1161 Predicted GTPases [General function prediction only]
Probab=94.66 E-value=0.14 Score=58.24 Aligned_cols=101 Identities=18% Similarity=0.149 Sum_probs=70.9
Q ss_pred EEEeCCCcc-chHHHHHhhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCC-hHHHHHHHHhcC
Q 001745 545 VFLDTPGHE-AFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN-PERVMQELSSIG 622 (1018)
Q Consensus 545 tfIDTPGHE-~F~~~r~rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~-~erv~~eL~e~g 622 (1018)
.+-+.|||. ++.......+...|+++.|+|+.+.........-.... +.|.++++||+|+.... ..+..+.+....
T Consensus 13 ~i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~--~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~ 90 (322)
T COG1161 13 KIQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVK--EKPKLLVLNKADLAPKEVTKKWKKYFKKEE 90 (322)
T ss_pred cccCCCCchHHHHHHHHHhcccCCEEEEEEeccccccccCccHHHHHc--cCCcEEEEehhhcCCHHHHHHHHHHHHhcC
Confidence 445559984 57777888889999999999999977766666555555 45569999999995421 222333333321
Q ss_pred CCCCCCCCCCcEEEEecCCCCChHHHHHHHHHH
Q 001745 623 LMPEDWGGDIPMVQISALKGEKVDDLLETIMLV 655 (1018)
Q Consensus 623 l~~e~~g~~vpiVeISAktGeGIdeLleaIl~l 655 (1018)
....+.+|++.+.+...+..++..+
T Consensus 91 --------~~~~~~v~~~~~~~~~~i~~~~~~~ 115 (322)
T COG1161 91 --------GIKPIFVSAKSRQGGKKIRKALEKL 115 (322)
T ss_pred --------CCccEEEEeecccCccchHHHHHHH
Confidence 2457889999999988888666544
No 492
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=94.43 E-value=0.16 Score=44.98 Aligned_cols=74 Identities=20% Similarity=0.256 Sum_probs=47.4
Q ss_pred EEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHH-HHhhhccCCEEEEE
Q 001745 494 LTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAM-RARGARVTDIAVIV 572 (1018)
Q Consensus 494 VaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~-r~rg~~~ADiVILV 572 (1018)
+++.|..|+||||+...+...-... |.. ... ++ .+.++|+|+......+ .......+|.++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~----g~~------v~~--~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v 65 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKR----GKR------VLL--ID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIV 65 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC----CCe------EEE--EC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEe
Confidence 6788999999999998876432111 110 111 12 5899999985433321 24455789999999
Q ss_pred EecCCCCChhH
Q 001745 573 VAADDGIRPQT 583 (1018)
Q Consensus 573 VDAddGv~~QT 583 (1018)
++.+.......
T Consensus 66 ~~~~~~~~~~~ 76 (99)
T cd01983 66 TTPEALAVLGA 76 (99)
T ss_pred cCCchhhHHHH
Confidence 98876444333
No 493
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=94.38 E-value=1.2 Score=56.54 Aligned_cols=87 Identities=21% Similarity=0.273 Sum_probs=68.6
Q ss_pred eEEEEEEee-cCCceEEEEEEeeeeEeeCCcEEEeeCCEEEEEEEEeeeec-ccccccccccCceeEEEEccCCCC-CCC
Q 001745 909 SAEVRAIFS-SGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRR-VKENVKEVNAGLECGVGAADYDDL-EEG 985 (1018)
Q Consensus 909 ~A~V~~vF~-~~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~i~SLk~-~k~dV~ev~~G~EcGi~i~~f~d~-~~G 985 (1018)
.+.|..+|. ...|.++-++|.+|+|+.|..+.+ |. ..|+|.+|.. ....|+++..|+=|.|. ++++. ..|
T Consensus 465 ~g~V~es~~dkg~G~v~~v~V~sGtLk~Gd~vv~---g~--~~gkVr~m~~~~~~~v~~A~pGd~V~I~--gl~~~p~~G 537 (787)
T PRK05306 465 RGTVIEAKLDKGRGPVATVLVQNGTLKVGDIVVA---GT--TYGRVRAMVDDNGKRVKEAGPSTPVEIL--GLSGVPQAG 537 (787)
T ss_pred EEEEEEEEEcCCCeEEEEEEEecCeEecCCEEEE---CC--cEEEEEEEECCCCCCCCEEcCCCeEEEe--CCCCCCCCC
Confidence 455556665 467999999999999999998754 33 4699999987 46799999999988876 78888 999
Q ss_pred CEEEEEEEEEeehhHHH
Q 001745 986 DIIEAFNSIQRKRTLEE 1002 (1018)
Q Consensus 986 D~ie~y~~~~~~~~l~~ 1002 (1018)
|.|.+++.....+.+-+
T Consensus 538 d~l~~~~~e~~a~~~~~ 554 (787)
T PRK05306 538 DEFVVVEDEKKAREIAE 554 (787)
T ss_pred CEEEEcCCHHHHHHHHH
Confidence 99998876655554433
No 494
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=94.37 E-value=0.35 Score=43.87 Aligned_cols=72 Identities=32% Similarity=0.392 Sum_probs=56.5
Q ss_pred EEeec---CCceEEEEEEeeeeEeeCCcEEEeeCCEEEEEEEEeeeecc-cccccccccCceeEEEEccCCCCCCCCEE
Q 001745 914 AIFSS---GSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRV-KENVKEVNAGLECGVGAADYDDLEEGDII 988 (1018)
Q Consensus 914 ~vF~~---~~g~IaGc~V~~G~i~~~~~vrviR~g~vi~~G~i~SLk~~-k~dV~ev~~G~EcGi~i~~f~d~~~GD~i 988 (1018)
.||+. ..|.++=++|.+|.|++|..+..++.++....++|--+.-. ..+++++.+|.=|+ +.+.+ +.+||.|
T Consensus 4 ~vfK~~~~~~G~i~~~Rv~sG~lk~gd~v~~~~~~~~~~v~~i~~~~g~~~~~~~~~~aGdI~~--i~g~~-~~~Gdtl 79 (81)
T cd04091 4 LAFKLEEGRFGQLTYMRIYQGKLKKGDTIYNVRTGKKVRVPRLVRMHSNEMEEVEEAGAGDICA--IFGID-CASGDTF 79 (81)
T ss_pred EEEEeecCCCCCEEEEEEecCEEcCCCEEEEcCCCCEEEEeEEEEEeCCCceEccEECCCCEEE--EECCC-cccCCEe
Confidence 56663 34999999999999999999999987764445566666544 67899999999777 45665 9999987
No 495
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.36 E-value=0.21 Score=58.40 Aligned_cols=143 Identities=16% Similarity=0.253 Sum_probs=79.8
Q ss_pred CCCCEEEEEeCCCCCHHHHHHHHHcCcc---cccccCCceeeeeeEEEE---------------E--ec----------C
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKV---AAAEAGGITQGIGAYKVQ---------------V--PV----------D 538 (1018)
Q Consensus 489 ~r~pkVaImGhvdvGKTTLLnrL~~~~v---~~~e~gGiTqdIga~~V~---------------i--~~----------d 538 (1018)
..+.+|+++|+.|+||||.|-.|....+ .....+-+|.| .|.+- + .. .
T Consensus 201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtD--tYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~ 278 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTD--TYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEA 278 (407)
T ss_pred ccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEec--cchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHH
Confidence 3478999999999999999987743211 01111122322 11110 0 00 1
Q ss_pred CceecEEEEeCCCccchHHHHH----hhhc--cCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCCCChH
Q 001745 539 GKLQPCVFLDTPGHEAFGAMRA----RGAR--VTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPE 612 (1018)
Q Consensus 539 gk~~~ItfIDTPGHE~F~~~r~----rg~~--~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~a~~e 612 (1018)
-..+.+.|+||.|+..+..+.. .++. ...-+.||++++-. .....+++.+....++. =++++|+|-. ...-
T Consensus 279 l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K-~~dlkei~~~f~~~~i~-~~I~TKlDET-~s~G 355 (407)
T COG1419 279 LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK-YEDLKEIIKQFSLFPID-GLIFTKLDET-TSLG 355 (407)
T ss_pred hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc-hHHHHHHHHHhccCCcc-eeEEEccccc-Cchh
Confidence 1346799999999765544433 2222 23456777777641 22334555655544444 3456999964 2455
Q ss_pred HHHHHHHhcCCCCCCCCCCCcEEEEecCCCCChHH
Q 001745 613 RVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDD 647 (1018)
Q Consensus 613 rv~~eL~e~gl~~e~~g~~vpiVeISAktGeGIde 647 (1018)
.+...+.+.+ .|+-.+ -+|++|.+
T Consensus 356 ~~~s~~~e~~---------~PV~Yv--T~GQ~VPe 379 (407)
T COG1419 356 NLFSLMYETR---------LPVSYV--TNGQRVPE 379 (407)
T ss_pred HHHHHHHHhC---------CCeEEE--eCCCCCCc
Confidence 5666665554 344444 36788765
No 496
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=93.96 E-value=0.32 Score=44.35 Aligned_cols=68 Identities=24% Similarity=0.311 Sum_probs=51.8
Q ss_pred CCceEEEEEEeeeeEeeCCcEEEeeCCE---EEEEEEEeeee-cccccccccccCceeEEEEccCCCCCCCCEE
Q 001745 919 GSGRVAGCMVSEGKLVKGCGIRVIRDGK---TVHVGVLDSLR-RVKENVKEVNAGLECGVGAADYDDLEEGDII 988 (1018)
Q Consensus 919 ~~g~IaGc~V~~G~i~~~~~vrviR~g~---vi~~G~i~SLk-~~k~dV~ev~~G~EcGi~i~~f~d~~~GD~i 988 (1018)
..|.++=++|.+|.|+.|..+++...+. ....+.|.-+. ....++.++.+|+=|+| .+.+++..||.|
T Consensus 13 ~~g~i~~~Rv~sG~l~~g~~v~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~i--~gl~~~~~Gdtl 84 (86)
T cd03691 13 YVGRIAIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKRVEVEEAEAGDIVAI--AGIEDITIGDTI 84 (86)
T ss_pred CCCeEEEEEEEeCEEcCCCEEEEEcCCCCEEEEEEeeEeeeeCCCeeECcEECCCCEEEE--ECCCCCccccee
Confidence 5689999999999999999999887532 22334443333 45588999999998744 467889999987
No 497
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.81 E-value=0.16 Score=58.96 Aligned_cols=116 Identities=26% Similarity=0.330 Sum_probs=63.9
Q ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHc----Ccccc----c---ccC--------CceeeeeeEEEEEe------------
Q 001745 488 EDRPPVLTIMGHVDHGKTTLLDHIRK----TKVAA----A---EAG--------GITQGIGAYKVQVP------------ 536 (1018)
Q Consensus 488 ~~r~pkVaImGhvdvGKTTLLnrL~~----~~v~~----~---e~g--------GiTqdIga~~V~i~------------ 536 (1018)
..+|-+|.++|--|+||||.+-.|.. ..+.. . .++ .+-..+.+|.-...
T Consensus 98 K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~ 177 (483)
T KOG0780|consen 98 KGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVD 177 (483)
T ss_pred cCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHH
Confidence 45677899999999999998876631 11100 0 011 11112222221111
Q ss_pred -cCCceecEEEEeCCC-cc----chHHHHH-hhhccCCEEEEEEecCCCCChhHHHHHHHHHHcCCC-EEEEEecCCC
Q 001745 537 -VDGKLQPCVFLDTPG-HE----AFGAMRA-RGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVP-IVIAINKIDK 606 (1018)
Q Consensus 537 -~dgk~~~ItfIDTPG-HE----~F~~~r~-rg~~~ADiVILVVDAddGv~~QT~E~I~~ak~~gIP-IIVVINKiDL 606 (1018)
+..+++.+.|+||.| |. -|..|.. ..+-..|-+|||+|++-| |..+....+-...+- --++++|+|=
T Consensus 178 ~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiG---Qaae~Qa~aFk~~vdvg~vIlTKlDG 252 (483)
T KOG0780|consen 178 RFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIG---QAAEAQARAFKETVDVGAVILTKLDG 252 (483)
T ss_pred HHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEecccc---HhHHHHHHHHHHhhccceEEEEeccc
Confidence 123567899999999 32 2444433 223457999999999853 333322222111222 2566799995
No 498
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=93.50 E-value=0.43 Score=45.44 Aligned_cols=97 Identities=13% Similarity=0.054 Sum_probs=56.7
Q ss_pred EeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEEecCCceecEEEEeCCCccchHHHHHhhhccCCEEEEEEecC
Q 001745 497 MGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAAD 576 (1018)
Q Consensus 497 mGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i~~dgk~~~ItfIDTPGHE~F~~~r~rg~~~ADiVILVVDAd 576 (1018)
=+..|+||||+.-.|...-... .|.... -+...... ...+.++|||+.... .....+..+|.+|++++.+
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~---~~~~~~----l~d~d~~~-~~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~ 75 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKE---AGRRVL----LVDLDLQF-GDDYVVVDLGRSLDE--VSLAALDQADRVFLVTQQD 75 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhc---CCCcEE----EEECCCCC-CCCEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCC
Confidence 4568999999877664321111 011110 11111111 126899999986433 3345678899999999887
Q ss_pred CCCChhHHHHHHHHHHcCC----CEEEEEec
Q 001745 577 DGIRPQTNEAIAHAKAAGV----PIVIAINK 603 (1018)
Q Consensus 577 dGv~~QT~E~I~~ak~~gI----PIIVVINK 603 (1018)
..-.......++.+...+. .+.+++|+
T Consensus 76 ~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 76 LPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred hHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 6544555555665555443 46788875
No 499
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=93.46 E-value=0.05 Score=52.06 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=18.9
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHcCc
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTK 515 (1018)
Q Consensus 490 r~pkVaImGhvdvGKTTLLnrL~~~~ 515 (1018)
+...+.|.|.+|+|||++++++....
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHh
Confidence 34568999999999999999998643
No 500
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=93.40 E-value=0.39 Score=53.61 Aligned_cols=148 Identities=14% Similarity=0.214 Sum_probs=68.7
Q ss_pred CEEEEEeCCCCCHHHHHHHHHcCcccccccCCceeeeeeEEEEE---ecCCceecEEEEeCCCc----cchHHHHHhhhc
Q 001745 492 PVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQV---PVDGKLQPCVFLDTPGH----EAFGAMRARGAR 564 (1018)
Q Consensus 492 pkVaImGhvdvGKTTLLnrL~~~~v~~~e~gGiTqdIga~~V~i---~~dgk~~~ItfIDTPGH----E~F~~~r~rg~~ 564 (1018)
|-|+++|.|++||||+...|...... .+.... .+.. .++.. . +.|...- ..+.....+.+.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~----~~~~v~----~i~~~~~~~~~~---~-y~~~~~Ek~~R~~l~s~v~r~ls 69 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE----KGKEVV----IISDDSLGIDRN---D-YADSKKEKEARGSLKSAVERALS 69 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH----TT--EE----EE-THHHH-TTS---S-S--GGGHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh----cCCEEE----EEcccccccchh---h-hhchhhhHHHHHHHHHHHHHhhc
Confidence 56999999999999999998753111 111111 1100 00111 1 2233221 122233334444
Q ss_pred cCCEEEEEEecCCCCChhHHHHHHHHHHcCCCEEEEEecCCCCC----------C--ChHHHHHHHHh-cCCCCCCCCCC
Q 001745 565 VTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDG----------A--NPERVMQELSS-IGLMPEDWGGD 631 (1018)
Q Consensus 565 ~ADiVILVVDAddGv~~QT~E~I~~ak~~gIPIIVVINKiDL~~----------a--~~erv~~eL~e-~gl~~e~~g~~ 631 (1018)
.- -|+++|...-+...-.|.+..++..+.++.++.-.+++.. . -.+++...+.. +.........+
T Consensus 70 ~~--~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~~~~~~e~i~~m~~RfE~P~~~nrWD 147 (270)
T PF08433_consen 70 KD--TIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEPERYPEETIDDMIQRFEEPDPKNRWD 147 (270)
T ss_dssp T---SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S--S-HHHHHHHHHH---TTSS-GGG
T ss_pred cC--eEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCCCCCCHHHHHHHHHHhcCCCCCCCcc
Confidence 33 3556888887888889999999999999888888887621 0 12333333322 22211111124
Q ss_pred CcEEEEe-cCCCCChHHHHHHHH
Q 001745 632 IPMVQIS-ALKGEKVDDLLETIM 653 (1018)
Q Consensus 632 vpiVeIS-AktGeGIdeLleaIl 653 (1018)
.|.|.+. .-....++++.++|.
T Consensus 148 ~plf~i~~~~~~~~~~~I~~~l~ 170 (270)
T PF08433_consen 148 SPLFTIDSSDEELPLEEIWNALF 170 (270)
T ss_dssp S-SEEEE-TTS---HHHHHHHHH
T ss_pred CCeEEEecCCCCCCHHHHHHHHH
Confidence 5666665 555566778888773
Done!