Query 001745
Match_columns 1018
No_of_seqs 518 out of 3975
Neff 4.9
Searched_HMMs 29240
Date Tue Mar 26 16:36:02 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001745.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1042-1045//hhsearch_pdb/001745hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zo1_I IF2, translation initia 1.0 1 1 862.8 5.4 499 489-999 2-501 (501)
2 3izy_P Translation initiation 1.0 1 1 856.6 11.7 501 489-992 2-537 (537)
3 1g7s_A Translation initiation 1.0 1 1 729.8 31.5 477 489-1003 3-561 (594)
4 2ywe_A GTP-binding protein LEP 1.0 1 1 301.5 23.4 455 490-1013 5-522 (600)
5 3cb4_D GTP-binding protein LEP 1.0 1 1 276.8 29.0 450 489-1013 2-517 (599)
6 1wb1_A Translation elongation 1.0 1 1 273.0 13.3 251 489-745 17-280 (482)
7 3mca_A HBS1, elongation factor 1.0 1 1 270.3 11.8 246 488-746 174-486 (592)
8 3j2k_7 ERF3, eukaryotic polype 1.0 1 1 268.8 23.6 239 488-736 14-313 (439)
9 3vqt_A RF-3, peptide chain rel 1.0 1 1 268.4 24.1 342 488-885 28-494 (548)
10 3j25_A Tetracycline resistance 1.0 1 1 267.6 4.7 239 490-734 1-317 (638)
No 1
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=1.00 E-value=1 Score=862.79 Aligned_cols=499 Identities=51% Similarity=0.828 Sum_probs=451.3
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEECCCCEECEEEEECCCCCCHHHHHHHHHCCCCE
Q ss_conf 99989999928999978999999808632323588213430599997219950219999299964107889952103788
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (1018)
Q Consensus 489 ~r~pkVaIIGhvdsGKTTLLn~L~k~kv~~se~gGiTqdI~a~~V~i~~dgk~~~ItLIDTPGHE~F~~~r~rgl~~ADi 568 (1018)
+|+++|+++||+|||||||+++|+...+...+.+|+|++++.+.+.+ .+..++|||||||++|..++.+++..+|+
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~----~~~~i~~iDTPGhe~f~~~~~~~~~~aD~ 77 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVET----ENGMITFLDTPGHAAFTSMRARGAQATDI 77 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCT----TSSCCCEECCCTTTCCTTSBCSSSBSCSS
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEE----CCEEEEEEECCCCHHHHHHHHHHHHHCCE
T ss_conf 98709999999999889999999768875356897037677999998----99899999899857889999988753889
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCHHHH
Q ss_conf 99999548999843899999999829999999966788999938999999852988888799985999713899995899
Q 001745 569 AVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDL 648 (1018)
Q Consensus 569 VILVVDAsdGv~~QT~E~I~~lk~~gIPIIVVINKiDl~~a~~erv~~eL~e~gl~~e~~gg~vpvV~ISAktGeGIdeL 648 (1018)
++||+|+++|+++||.+++.++...++|+|+++||+|+++++.+++..++...++..+.|++.++++++||++|+|+++|
T Consensus 78 aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eL 157 (501)
T 1zo1_I 78 VVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDEL 157 (501)
T ss_dssp EEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHH
T ss_conf 99994256676277899999888629649999973265435777888999872102887278760799864303574035
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEEECCCEEEECCCEEEEEEEECCCCCCCCCCCCCC
Q ss_conf 99999999986420288788741399975314889489999672199239899984504689999646899301369996
Q 001745 649 LETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEAFGKVRALFDDSGNRVDEAGPSI 728 (1018)
Q Consensus 649 lE~Ii~lael~el~~~p~~~a~g~Vies~~dkg~G~VatglV~~GTLkvGD~Iv~G~~~gKVRsL~~~~g~~V~~A~pg~ 728 (1018)
+++|...++..++..+++.++.+.|++++.++++|++++++|++|+|++||.+++++.+++||+|++.++..+++|+||+
T Consensus 158 le~I~~~~~~~~~~~~~~~~~~~~V~e~~~d~g~G~v~~~~V~~Gtlk~Gd~v~~g~~~~kVr~i~~~~g~~v~~a~~g~ 237 (501)
T 1zo1_I 158 LDAILLQAEVLELKAVRKGMASGAVIESFLDKGRGPVATVLVREGTLHKGDIVLCGFEYGRVRAMRNELGQEVLEAGPSI 237 (501)
T ss_dssp HHHTTTTCCCSTTTSCCCSBCEEEEEEEEECSSSSEEEEEEEEESBCCTTCEEEEEBSSCEEEEECCTTTTSEEEECCSS
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCEEEEEEEEEEEEEECCCEEEECCCEEEEEEEEECCCCCCCEECCCC
T ss_conf 55556555432101223565543159999727928999999985699059889976513399999804898675864577
Q ss_pred CEEEECCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEEECC
Q ss_conf 37994258987789738991686899999999999999998853018983124424777641966787862133999918
Q 001745 729 PVQIIGLNGVPIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGKVTLSSLASAVSAGKLSGLDLHQLNVIMKVD 808 (1018)
Q Consensus 729 ~V~I~Gl~~~P~aGd~f~vv~se~~Ar~~a~~r~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~iIiKaD 808 (1018)
+|.+.||++.|.+|+.|.++.+++.||++++.|++..++..+..+ ...+|++++..+..+ +.+++++|+|||
T Consensus 238 ~V~i~gl~~~~~~Gd~~~~~~~~~~a~~~~~~r~~~~~~~~~~~~---~~~~l~~~~~~~~~~-----~~~~~~~ivkad 309 (501)
T 1zo1_I 238 PVEILGLSGVPAAGDEVTVVRDEKKAREVALYRQGKFREVKLARQ---QKSKLENMFANMTEG-----EVHEVNIVLKAD 309 (501)
T ss_dssp CSSSEEECSCCCTTEEEEEECSSCTTBCSSCBTTCCCCSHHHHHH---HHHHHSSTTTSCSSC-----CCCCCCCBCCCS
T ss_pred CEEEECCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHH---HHHCHHHHHHHHHCC-----CCCEEEEEEEEC
T ss_conf 279967879898999899428878988999999999999987665---330699998666316-----874577999978
Q ss_pred CCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCEEEEECHHHHHHH
Q ss_conf 87509999999982799970799998356878875299898439889995699993378687733965988114848999
Q 001745 809 VQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLID 888 (1018)
Q Consensus 809 v~GSlEAI~~~L~~l~~~~v~i~vi~~~vG~ItesDV~lA~as~aiIigFNV~~~~~a~~~A~~~gV~Ir~~~VIY~Lid 888 (1018)
++||+|||.++|.+|++++++++|+|++||+||++||++|++++|+||||||+++++++++|+++||+|++|+|||+|+|
T Consensus 310 ~~gs~ea~~~~l~~~~~~~~~~~v~~~~vG~i~~~Dv~~a~~~~a~i~~fnv~~~~~~~~~a~~~~v~i~~~~iiy~l~~ 389 (501)
T 1zo1_I 310 VQGSVEAISDSLLKLSTDEVKVKIIGSGVGGITETDATLAAASNAILVGFNVRADASARKVIEAESLDLRYYSVIYNLID 389 (501)
T ss_dssp CHHHHHHHHHHHTTTTCCCSBCCCCCSSSSSSHHHHSTTTCGGGCCEEECSSCCCHHHHTTSCSSSSCEEESCCCSHHHH
T ss_pred CCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCEEEEECHHHHHHH
T ss_conf 86789999999986164563047998136888989999877318879995588997899999974987999077999999
Q ss_pred HHHHHHHCCCCCCEEEEEEEEEEEEEEEEC-CCCEEEEEEEEEEEEEECCCEEEEECCEEEEEEEEEEEECCCCCCCCCC
Q ss_conf 999999602455201246676899898506-9943998998630574099189953997999999854311343233001
Q 001745 889 DMRNAMEGLLETVEEQVPIGSAEVRAIFSS-GSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVN 967 (1018)
Q Consensus 889 dik~~l~~~l~p~~~e~~~G~AeV~~vF~~-~~g~VAGc~V~~G~i~~~~~vrviR~g~vi~~G~I~SLkr~KddV~ev~ 967 (1018)
|++++|+++|+|.++|+++|+|+|+++|+. +.|+||||+|++|+|++++++||+|+|.+||+|+|.||||||+||+||+
T Consensus 390 ~~~~~~~~~~~~~~~~~~~g~a~v~~~f~~~~~~~iaG~~v~~G~~~~~~~~~~~r~~~~i~~g~i~sl~~~k~~v~e~~ 469 (501)
T 1zo1_I 390 EVKAAMSGMLSPELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVR 469 (501)
T ss_dssp HTHHHHTTTSSTTCCCCCCCCEEEEECSSCCCSSCEEEEEEEEEEEETTCEEECCSSSCCCEEEEBCCEEETTEEESEEE
T ss_pred HHHHHHHHHCCCEEEEEEEEEEEEEEEEECCCCCEEEEEEEEECEEECCCEEEEEECCEEEEEEEEEHHCCCCCCCCEEC
T ss_conf 99999876418425642005899999996599988999999708896398599970880899878811343686216988
Q ss_pred CCCEEEEEECCCCCCCCCCEEEEEEEEEEEHH
Q ss_conf 68646999716899999989999998994011
Q 001745 968 AGLECGVGAADYDDLEEGDIIEAFNSIQRKRT 999 (1018)
Q Consensus 968 ~G~ECGI~l~~f~d~~~GD~Ie~y~~~e~~r~ 999 (1018)
+|+||||.|++|+||++||+||||+++|++|+
T Consensus 470 ~g~ecgi~~~~~~~~~~gd~~~~~~~~~~~~~ 501 (501)
T 1zo1_I 470 NGMECGIGVKNYNDVRTGDVIEVFEIIEIQRT 501 (501)
T ss_dssp TTCCEEEEBCCCTTCCTTCEEEECCCTTTSCC
T ss_pred CCCEEEEEECCCCCCCCCCEEEEEEEEEECCC
T ss_conf 99889999758577998989999999996579
No 2
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=1.00 E-value=1 Score=856.56 Aligned_cols=501 Identities=44% Similarity=0.678 Sum_probs=451.8
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEECCCCEECEEEEECCCCCCHHHHHHHHHCCCCE
Q ss_conf 99989999928999978999999808632323588213430599997219950219999299964107889952103788
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDI 568 (1018)
Q Consensus 489 ~r~pkVaIIGhvdsGKTTLLn~L~k~kv~~se~gGiTqdI~a~~V~i~~dgk~~~ItLIDTPGHE~F~~~r~rgl~~ADi 568 (1018)
+|+|+|+++||+|||||||+++|++..+...+.+|+|++++++.+.+. .+..++|||||||++|..++.+++..+|+
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~---~g~~i~~iDTPGhe~f~~~~~~~~~~aD~ 78 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP---SGEKITFLDTPGHAAFSAMRARGTQVTDI 78 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS---CSSCCBCEECSSSCCTTTSBBSSSBSBSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEEC---CCCEEEEEECCCHHHHHHHHHHHHCCCCE
T ss_conf 989999999998999899999995887662017966688769999948---99789999898848999999998711988
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCHHHH
Q ss_conf 99999548999843899999999829999999966788999938999999852988888799985999713899995899
Q 001745 569 AVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSIGLMPEDWGGDIPMVQISALKGEKVDDL 648 (1018)
Q Consensus 569 VILVVDAsdGv~~QT~E~I~~lk~~gIPIIVVINKiDl~~a~~erv~~eL~e~gl~~e~~gg~vpvV~ISAktGeGIdeL 648 (1018)
++||+|++++.++||.+++.++...++|+|+++||+|+++.+.+++..++..+++..+.|++.++++++||++|.|+++|
T Consensus 79 vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eL 158 (537)
T 3izy_P 79 VILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMAL 158 (537)
T ss_dssp CEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHH
T ss_conf 99999799986477899999998759968999943432334258899999863013776189833999978879995047
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEEECCCEEEECCCEEEEEEEECCCCCCCCCCCCCC
Q ss_conf 99999999986420288788741399975314889489999672199239899984504689999646899301369996
Q 001745 649 LETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGEAFGKVRALFDDSGNRVDEAGPSI 728 (1018)
Q Consensus 649 lE~Ii~lael~el~~~p~~~a~g~Vies~~dkg~G~VatglV~~GTLkvGD~Iv~G~~~gKVRsL~~~~g~~V~~A~pg~ 728 (1018)
+++|..+++..++..+++.++.+.|++++.++++|++++++|.+|+|++||.+++|..+++||+|++++|+.+++|.||+
T Consensus 159 le~I~~l~~~~~~~~~~~~~~~~~V~e~~~~~g~G~V~~g~V~~G~l~~Gd~v~~g~~~~kVr~i~~~~g~~v~~A~~G~ 238 (537)
T 3izy_P 159 AEATIALAEMLELKADPTGAVEGTVIESFTDKGRGPVTTAIIQRGTLRKGSILVAGKSWAKVRLMFDENGRAVNEAYPSM 238 (537)
T ss_dssp HHHHHHHHTTCCCCCCSSSSEEEEEEEECCCTTCCCCEEEEEEEECCSSEEEECCSSCCEEEEEEEECCCCCSCCSCCST
T ss_pred HHHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEECCEEECCCEEEECCCEEEEEEEECCCCCCCCEECCCC
T ss_conf 89999865303555788788611689999848975399999966889769999738954999999968997976986999
Q ss_pred CEEEECCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCC-----------CCCC---C---------HHHHH
Q ss_conf 37994258987789738991686899999999999999998853018-----------9831---2---------44247
Q 001745 729 PVQIIGLNGVPIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAG-----------DGKV---T---------LSSLA 785 (1018)
Q Consensus 729 ~V~I~Gl~~~P~aGd~f~vv~se~~Ar~~a~~r~~~~r~~~~~~~~~-----------~~~~---~---------l~~~~ 785 (1018)
+|.|.|+++.|.+||.|.++++++.||+++++|....+++.+..... ..+. . +..++
T Consensus 239 ~V~i~g~~~~~~~Gd~l~~~~~~~~a~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (537)
T 3izy_P 239 PVGIIGWRDLPSAGDEILEVESEPRAREVVDWRKYEQEQEKNKEDLKLIEEKRKEHQEAHRKDREKYGTVHWKERSYIKY 318 (537)
T ss_dssp TCCCCSSEEEEEEESSCCSCCSSCCCCCCSCCSSSHHHHTGGGBSSCCCCCCCCCCCCCSSTTHHHHSCSHHHHHHHHHH
T ss_pred EEEEECCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 79997887899999999956875899999999999999876532133344444555677787665410110355556666
Q ss_pred HHHHC------CCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCC-CCEEEEEEECCCCCCCHHHHHHHHHCCCEEEEE
Q ss_conf 77641------96678786213399991887509999999982799-970799998356878875299898439889995
Q 001745 786 SAVSA------GKLSGLDLHQLNVIMKVDVQGSIEAVRQALQVLPQ-DNVTLKFLLQATGDISASDVDLAVASKAIILGF 858 (1018)
Q Consensus 786 ~~~~~------~~~~~~~~~~l~iIiKaDv~GSlEAI~~~L~~l~~-~~v~i~vi~~~vG~ItesDV~lA~as~aiIigF 858 (1018)
..+.. ......+.+++|+|+|||++||+|||.++|.+|++ +++.++|+|++||+||++||+||++++|+||||
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~iik~d~~Gs~ea~~~~l~~~~~~~~~~~~i~~~~vG~i~~~Dv~~a~~~~a~i~~f 398 (537)
T 3izy_P 319 REKRQQQPLKPKEKLERDSNVLPVIVKGDVDGSVEAILNVMDTYDASHECELDLVHFGVGDISENDVNLAETFHGVIYGF 398 (537)
T ss_dssp HHHHHHCTTTTCCCCCCCCCCCCBEEEBCCHHHHHHHHHHHHHCCCCSSCCCCBSCCCBSCBCHHHHHHHHHHSCCEEES
T ss_pred HHHHHHHHCCCHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHCCCEEEEE
T ss_conf 53221110110121025664255999967736099999999856888707899998307889888999987448869995
Q ss_pred CCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEEEECC----CCEEEEEEEEEEEEE
Q ss_conf 6999933786877339659881148489999999996024552012466768998985069----943998998630574
Q 001745 859 NVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEGLLETVEEQVPIGSAEVRAIFSSG----SGRVAGCMVSEGKLV 934 (1018)
Q Consensus 859 NV~~~~~a~~~A~~~gV~Ir~~~VIY~Liddik~~l~~~l~p~~~e~~~G~AeV~~vF~~~----~g~VAGc~V~~G~i~ 934 (1018)
||++++.++++|++++|+|++|+|||+|+||++++|++||+|.++|+++|+|+|+++|..+ .|+||||+|++|+|+
T Consensus 399 nv~~~~~~~~~a~~~~v~i~~~~iiy~l~~~~~~~~~~~l~~~~~e~~~g~a~v~~~f~~~~~~~~~~iaG~~v~~G~i~ 478 (537)
T 3izy_P 399 NVNAGNVIQQLAAKKGVKIKLHKIIYRLIEDLQEELSSRLPCIVEEHPIGEASILATFSITEGKKKVPVAGCRVQKGQIE 478 (537)
T ss_dssp SCCBCHHHHHHHHHHTCCCBCSCSSCCSHHHHHHHHSSSSSCSSSCCCSSEEEEEEEESSCSSSCCSCEEEEEECSSEEE
T ss_pred CCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCEEECCCCCCCCEEEEEEEECEEE
T ss_conf 57889789999987698699927499999999999974268703788889999958189888775671789999727286
Q ss_pred ECCCEEEEECCEEEEEEEEEEEECCCCCCCCCCCCCEEEEEECC-CCCCCCCCEEEEEE
Q ss_conf 09918995399799999985431134323300168646999716-89999998999999
Q 001745 935 KGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAGLECGVGAAD-YDDLEEGDIIEAFN 992 (1018)
Q Consensus 935 ~~~~vrviR~g~vi~~G~I~SLkr~KddV~ev~~G~ECGI~l~~-f~d~~~GD~Ie~y~ 992 (1018)
+++++||+|+|++||+|+|.|||||||||+||++|+||||+|+| |+||++||+||||+
T Consensus 479 ~~~~~r~~r~~~~i~~g~i~slk~~k~~v~ev~~g~ecgi~~~~~~~~~~~gd~ie~~~ 537 (537)
T 3izy_P 479 KQKKFKLIRNGHVIWKGSLISLKHHKDDTSVVKTGMDCGLSLDEEKIEFKVGDAIICYE 537 (537)
T ss_dssp SSSEEEEESSSSEEEEEECCCCCCSSCCCSEEETTCEEEEESSSSCSSCSCCCEEEEEC
T ss_pred ECCEEEEECCCEEEEEEEEEHHCCCCCCCCEECCCCEEEEEECCCCCCCCCCCEEEEEC
T ss_conf 08807996499899998883034258254357689889999717645799897899969
No 3
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=1.00 E-value=1 Score=729.81 Aligned_cols=477 Identities=31% Similarity=0.499 Sum_probs=403.4
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEEC---------C-----CCEECEEEEECCCCCC
Q ss_conf 9998999992899997899999980863232358821343059999721---------9-----9502199992999641
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKTKVAAAEAGGITQGIGAYKVQVPV---------D-----GKLQPCVFLDTPGHEA 554 (1018)
Q Consensus 489 ~r~pkVaIIGhvdsGKTTLLn~L~k~kv~~se~gGiTqdI~a~~V~i~~---------d-----gk~~~ItLIDTPGHE~ 554 (1018)
.|+++|+|+||+|||||||+++|++..+...+.+|+|++++++.+...+ . .....++|||||||++
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEECCCCEEEEEECHHHHHCCCCCCCCCCCCCCCCEEEEECCCCHH
T ss_conf 88819999999997399999999666676566786002137199862011210243235532225548889998979378
Q ss_pred HHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC-CCH--------------H-------
Q ss_conf 078899521037889999954899984389999999982999999996678899-993--------------8-------
Q 001745 555 FGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDG-ANP--------------E------- 612 (1018)
Q Consensus 555 F~~~r~rgl~~ADiVILVVDAsdGv~~QT~E~I~~lk~~gIPIIVVINKiDl~~-a~~--------------e------- 612 (1018)
|..++.+++..+|++|||+|+++|+++||.+++.++...++|+|+++||+|+.. +.. +
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~~ 162 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLD 162 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999977753999999997998854767999999997498099996256664333333477468999876788888777
Q ss_pred ----HHHHHHHHCCCCCC------CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH-H--HHHCCCCCCCCCEEEEEEEE
Q ss_conf ----99999985298888------87999859997138999958999999999998-6--42028878874139997531
Q 001745 613 ----RVMQELSSIGLMPE------DWGGDIPMVQISALKGEKVDDLLETIMLVAEL-Q--ELKANPHRNAKGTVIEAGLH 679 (1018)
Q Consensus 613 ----rv~~eL~e~gl~~e------~~gg~vpvV~ISAktGeGIdeLlE~Ii~lael-~--el~~~p~~~a~g~Vies~~d 679 (1018)
++..++.+.++..+ .++..++++++||++|.|+++|+++|..+... . .+..+++.++.+.|+++..+
T Consensus 163 e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~~~~l~~~~~~p~~~~V~~~~~d 242 (594)
T 1g7s_A 163 TKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLREQLKIEEDSPARGTILEVKEE 242 (594)
T ss_dssp HHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCSGGGEECTTSBCEEEEEEEEEE
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCEEEEEEEEEE
T ss_conf 78999999998758616789988751676228987646788825578999753400002341245578850489999980
Q ss_pred CCCCCEEEEEEEEEEEECCCEEEECCCEE----EEEEEECC-----------CCCCCCCCCCCCCE--EEECCCCCCCCC
Q ss_conf 48894899996721992398999845046----89999646-----------89930136999637--994258987789
Q 001745 680 KSKGPVATFILQNGTLKKGDVVVCGEAFG----KVRALFDD-----------SGNRVDEAGPSIPV--QIIGLNGVPIAG 742 (1018)
Q Consensus 680 kg~G~VatglV~~GTLkvGD~Iv~G~~~g----KVRsL~~~-----------~g~~V~~A~pg~~V--~I~Gl~~~P~aG 742 (1018)
++.|++++++|++|+|++||.+++++..+ +|++|+.. ++..+++|.|+.++ .+.||+++ .+|
T Consensus 243 ~g~G~v~~~rV~~G~Lk~Gd~v~~~~~~~~~~~rV~~i~~~~~~~elr~~~~~~~~v~ea~~~aG~~v~~~~l~~~-~~G 321 (594)
T 1g7s_A 243 TGLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIKIVAPGIDDV-MAG 321 (594)
T ss_dssp TTEEEEEEEEEEESEEETTCEEEEEBSSSEEEEECCEEEEECCCC----CCCSEEECSEEESSEEEEEECSSCTTB-CTT
T ss_pred CCCEEEEEEEEEECEEEECCEEEECCCCCCEEEEEEEEEECCCCCHHHHCCCCCEECCEECCCCCCEEEECCCCCC-CCC
T ss_conf 7957999999962879619999988889845689869980266213331357856813885799809997466788-999
Q ss_pred CEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 73899168689999999999999999885301898312442477764196678786213399991887509999999982
Q 001745 743 DEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGKVTLSSLASAVSAGKLSGLDLHQLNVIMKVDVQGSIEAVRQALQV 822 (1018)
Q Consensus 743 d~f~vv~se~~Ar~~a~~r~~~~r~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~iIiKaDv~GSlEAI~~~L~~ 822 (1018)
|.|.++++++++++... . .+.. + .++.+.+++|||||++||+|||.++|.+
T Consensus 322 d~l~~~~~~~~~~~~~~-------~-~~~~-----------~----------~~~~~~~~~~vkad~~gs~eal~~~l~~ 372 (594)
T 1g7s_A 322 SPLRVVTDPEKVREEIL-------S-EIED-----------I----------KIDTDEAGVVVKADTLGSLEAVVKILRD 372 (594)
T ss_dssp CEEEECSSHHHHHHHHH-------H-HHHT-----------T----------SCBCSSSCCEEEESSHHHHHHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHH-------H-HHHH-----------C----------CCCCCCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 98881599899999999-------9-8874-----------3----------3544446479983787889999999984
Q ss_pred CCCCCEEEEEEECCCCCCCHHHHHHHHHC------CCEEEEECCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHC
Q ss_conf 79997079999835687887529989843------988999569999337868773396598811484899999999960
Q 001745 823 LPQDNVTLKFLLQATGDISASDVDLAVAS------KAIILGFNVKAPGSVKTYADNKGVEIRLYRVIYDLIDDMRNAMEG 896 (1018)
Q Consensus 823 l~~~~v~i~vi~~~vG~ItesDV~lA~as------~aiIigFNV~~~~~a~~~A~~~gV~Ir~~~VIY~Liddik~~l~~ 896 (1018)
+ +++|++++||+||++||++|+++ +|+||||||+++++++++|+++||+|++|+|||+|+||++++|++
T Consensus 373 ~-----~~~v~~~~vg~i~~~dv~~a~~~~~~~~~~a~i~~fnv~~~~~~~~~a~~~~v~i~~~~iiy~l~~~~~~~~~~ 447 (594)
T 1g7s_A 373 M-----YVPIKVADIGDVSRRDVVNAGIALQEDRVYGAIIAFNVKVIPSAAQELKNSDIKLFQGNVIYRLMEEYEEWVRG 447 (594)
T ss_dssp T-----TCCCSEEEESSBCHHHHHHHHHHHTTCTTSCEEEEESCCBCHHHHHHTSSSSSEEEEESCHHHHHHHHHHHHHH
T ss_pred C-----CCCEEECCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHH
T ss_conf 7-----87579514688878899998743113767878999578689889999997498699877799999999998653
Q ss_pred CCCCCEEE---EEEEEEEEE----EEEECCCCEEEEEEEEEEEEEECCCEEEEECCEEEEEEEEEEEECCCCCCCCCCCC
Q ss_conf 24552012---466768998----98506994399899863057409918995399799999985431134323300168
Q 001745 897 LLETVEEQ---VPIGSAEVR----AIFSSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSLRRVKENVKEVNAG 969 (1018)
Q Consensus 897 ~l~p~~~e---~~~G~AeV~----~vF~~~~g~VAGc~V~~G~i~~~~~vrviR~g~vi~~G~I~SLkr~KddV~ev~~G 969 (1018)
|++|.+++ ..+|.|+++ +||+.++|+||||+|++|+|++|+++|+ |+|. |+|+|.||||+|+||+||++|
T Consensus 448 ~~~~~~~~~~~~~~~~~~~~i~~~~~f~~~~~~i~g~~v~~G~~~~~~~~~~-~~~~--~~g~i~sl~~~k~~v~~~~~g 524 (594)
T 1g7s_A 448 IEEEKKKKWMEAIIKPASIRLIPKLVFRQSKPAIGGVEVLTGVIRQGYPLMN-DDGE--TVGTVESMQDKGENLKSASRG 524 (594)
T ss_dssp HHHHHHHHHHTTSCCCEEEEEEEEEEEECSSSEEEEEEEEEEEEETTCEEEC-TTSC--EEEEEEEEEETTEEESEEETT
T ss_pred CCCHHHHHHHHEEEEEEEEEEECCEEECCCCCEEEEEEEECCEEECCCEEEE-CCCC--EEEEEEHHCCCCCCCCCCCCC
T ss_conf 0451555443244202899993113892799869999996188954985996-6993--799885132158422512789
Q ss_pred CEEEEEECCC---CCCCCCCEEEEEEEEEEEHHHHHH
Q ss_conf 6469997168---999999899999989940118899
Q 001745 970 LECGVGAADY---DDLEEGDIIEAFNSIQRKRTLEEA 1003 (1018)
Q Consensus 970 ~ECGI~l~~f---~d~~~GD~Ie~y~~~e~~r~l~~~ 1003 (1018)
+||||.|++| |||++||+||+|...+..+.|++.
T Consensus 525 ~e~gi~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~~ 561 (594)
T 1g7s_A 525 QKVAMAIKDAVYGKTIHEGDTLYVDIPENHYHILKEQ 561 (594)
T ss_dssp CCEEEEEETCCBTTTBCTTCEEEECCCHHHHHTTTSC
T ss_pred CEEEEEEECCCCCCCCCCCCEEEEEEEHHHHHHHHHH
T ss_conf 7899998376557889879899999985889999999
No 4
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=1.00 E-value=1 Score=301.54 Aligned_cols=455 Identities=21% Similarity=0.257 Sum_probs=328.0
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCC-C--------------CCCCCCCCEEEEEEEEEEEEC-CCCEECEEEEECCCCC
Q ss_conf 99899999289999789999998086-3--------------232358821343059999721-9950219999299964
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTK-V--------------AAAEAGGITQGIGAYKVQVPV-DGKLQPCVFLDTPGHE 553 (1018)
Q Consensus 490 r~pkVaIIGhvdsGKTTLLn~L~k~k-v--------------~~se~gGiTqdI~a~~V~i~~-dgk~~~ItLIDTPGHE 553 (1018)
+.++|+|+||+|||||||+++|+... . ......|+|+......+.+.. ++..+.++|||||||+
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCCEEEEEEEEEEEECCCCCEEEEEEEECCCCH
T ss_conf 73399999999987999999998506985444321211465413321662353327999997379975899999897937
Q ss_pred CHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHC-CCCCCCCCCCC
Q ss_conf 10788995210378899999548999843899999999829999999966788999938999999852-98888879998
Q 001745 554 AFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-GLMPEDWGGDI 632 (1018)
Q Consensus 554 ~F~~~r~rgl~~ADiVILVVDAsdGv~~QT~E~I~~lk~~gIPIIVVINKiDl~~a~~erv~~eL~e~-gl~~e~~gg~v 632 (1018)
+|..++.+++..+|++|||+|+++|++.|+.+++..+...++|+|+++||+|+..++.+++..++... ++. ..
T Consensus 85 dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~------~~ 158 (600)
T 2ywe_A 85 DFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQIEEVLGLD------PE 158 (600)
T ss_dssp GGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCC------GG
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCC------CC
T ss_conf 679999999986899999997998866879999999987799789998546765467899999988762877------64
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEEECCCEEEECC--CEEEE
Q ss_conf 5999713899995899999999999864202887887413999753148894899996721992398999845--04689
Q 001745 633 PMVQISALKGEKVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE--AFGKV 710 (1018)
Q Consensus 633 pvV~ISAktGeGIdeLlE~Ii~lael~el~~~p~~~a~g~Vies~~dkg~G~VatglV~~GTLkvGD~Iv~G~--~~gKV 710 (1018)
+++++||++|.|+++|+++|... +..+..+++.++.+.|+++.++.+.|.+++++|.+|+|++||.|.+.+ ...+|
T Consensus 159 ~vi~vSAktg~GI~~Lle~I~~~--lp~p~~~~~~pl~~lV~~~~~d~~~G~v~~~rV~sG~l~~Gd~I~~~~~~~~~~v 236 (600)
T 2ywe_A 159 EAILASAKEGIGIEEILEAIVNR--IPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDKIMLMSTGKEYEV 236 (600)
T ss_dssp GCEECBTTTTBSHHHHHHHHHHH--SCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESEECTTCEEEETTTTEEEEC
T ss_pred CEEEEEEECCCCCHHHHHHHHHH--CCCCCCCCCCCCCEEEEEEEECCCCEEEEEEEEEECEEECCCEEEECCCCCEEEE
T ss_conf 27999840588806899999874--5222123467750469987522565089999998288961999986156515763
Q ss_pred EEEECCC--CCCCCCCCCCCCEEEE-CCC---CCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 9996468--9930136999637994-258---987789738991686899999999999999998853018983124424
Q 001745 711 RALFDDS--GNRVDEAGPSIPVQII-GLN---GVPIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGKVTLSSL 784 (1018)
Q Consensus 711 RsL~~~~--g~~V~~A~pg~~V~I~-Gl~---~~P~aGd~f~vv~se~~Ar~~a~~r~~~~r~~~~~~~~~~~~~~l~~~ 784 (1018)
+.+.... ...++++.+|+.+.+. |+. ++ ..||.+...++.. ...+..+
T Consensus 237 ~~i~~~~~~~~~v~~~~aGdi~~v~~gi~~~~~~-~~GDtl~~~~~~~-------------------------~~~l~~~ 290 (600)
T 2ywe_A 237 TEVGAQTPKMTKFDKLSAGDVGYIAASIKDVRDI-RIGDTITHAKNPT-------------------------KEPVPGF 290 (600)
T ss_dssp CEEEEESSSEEEESCEETTCEEEEESSCCCTTSS-CTTCEEEESSSCC-------------------------SSCCSCC
T ss_pred ECCCCCCCCCEECCEEECCCEEEEECCCCCHHHC-CCCCEEEECCCCC-------------------------CCCCCCC
T ss_conf 0133337984597787448343453364426226-6799898378755-------------------------4466777
Q ss_pred HHHHHCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCH
Q ss_conf 77764196678786213399991887509999999982799970799998356878875299898439889995699993
Q 001745 785 ASAVSAGKLSGLDLHQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAPG 864 (1018)
Q Consensus 785 ~~~~~~~~~~~~~~~~l~iIiKaDv~GSlEAI~~~L~~l~~~~v~i~vi~~~vG~ItesDV~lA~as~aiIigFNV~~~~ 864 (1018)
....+.+...+.+...+..+.+.++|.+|..+++.+.+.. .++.+++.||++....
T Consensus 291 ----------~~~~P~v~~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~~--------------et~~~l~~g~~~~~~G 346 (600)
T 2ywe_A 291 ----------QPAKPMVYAGIYPAEDTTYEELRDALEKYAINDAAIVYEP--------------ESSPALGMGFRVGFLG 346 (600)
T ss_dssp ----------CCCCCCEEEEEEECTTCCHHHHHHHHHHHHTTCSSCEEEE--------------EEETTTEEEEEEEESS
T ss_pred ----------CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCEEEEEE--------------CCCCCCCCCEEEEECC
T ss_conf ----------8887379998613666649999999998765298899997--------------7752235516998531
Q ss_pred HH-----HH-HHHHCCCEEEEEC--HHHHHH-H-HHH--------------HHHHCCCCCCEEEEEEEEEE-EEEEE---
Q ss_conf 37-----86-8773396598811--484899-9-999--------------99960245520124667689-98985---
Q 001745 865 SV-----KT-YADNKGVEIRLYR--VIYDLI-D-DMR--------------NAMEGLLETVEEQVPIGSAE-VRAIF--- 916 (1018)
Q Consensus 865 ~a-----~~-~A~~~gV~Ir~~~--VIY~Li-d-dik--------------~~l~~~l~p~~~e~~~G~Ae-V~~vF--- 916 (1018)
.. .+ +..+.|+++.... |+|+-. . +-+ ..+..+|+|..+-.+.-+.+ +-.|.
T Consensus 347 ~lHlei~~erl~re~~~~v~~~~P~V~yreti~~~g~~~~~~~p~~~p~~~~~~~~llEP~~~~~i~vP~e~~G~v~~~~ 426 (600)
T 2ywe_A 347 LLHMEIVQERLEREYGVKIITTAPNVIYRVKKKFTDEVIEVRNPMDFPDNAGLIEYVEEPFVLVTIITPKEYVGPIIQLC 426 (600)
T ss_dssp HHHHHHHHHHHHHHSCCCEEECCCEECEEEEETTCSSCEEESSGGGSCSCGGGEEEEEEEEEEEEEEEEGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEECCCCCEEEEECHHHCCCCCCCCCCCCCCEEEEEEEECHHHHHHHHHHH
T ss_conf 87999999999865392699985168889886389738997175558987754441359738999994578889999999
Q ss_pred ECCCCEEEEEEEEEEEEEECCCEEEEECCEEEEEEEEEEE-ECCCCCCCCCCCCCE-EEEEECCCCCC--------CCCC
Q ss_conf 0699439989986305740991899539979999998543-113432330016864-69997168999--------9998
Q 001745 917 SSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSL-RRVKENVKEVNAGLE-CGVGAADYDDL--------EEGD 986 (1018)
Q Consensus 917 ~~~~g~VAGc~V~~G~i~~~~~vrviR~g~vi~~G~I~SL-kr~KddV~ev~~G~E-CGI~l~~f~d~--------~~GD 986 (1018)
....|.+.|+....+ ..+ .+.|+-.++.| ..|.++.+....|+- +-..|.+|... .-|+
T Consensus 427 ~~rrG~~~~~~~~~~-----~~~------~i~~~~P~~e~~~~~~~~L~s~T~G~g~~~~~f~~y~~~~~~~~~~~~ng~ 495 (600)
T 2ywe_A 427 QEKRGIQKNMTYLDP-----NTV------YLEYEMPLSEIIVDFHDKIKSISRGFASYDYEFIGYRPSDLIKLTVLINKK 495 (600)
T ss_dssp HHTTCEEEEEEEEET-----TEE------EEEEEEEHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEECCEEEEEEEESSS
T ss_pred HHCCCEEECCEECCC-----CEE------EEEEEECHHHHHHHHHHHHHHCCCCEEEEEEEECCCEECCCCCCCCCCCCC
T ss_conf 874968845387579-----889------999997189987659896051178759999896461482343544245897
Q ss_pred EEEEEEEEEEEHHHHHHHHHHHHHHHH
Q ss_conf 999999899401188999999986310
Q 001745 987 IIEAFNSIQRKRTLEEASASMASALEG 1013 (1018)
Q Consensus 987 ~Ie~y~~~e~~r~l~~~~~~~~~~~~~ 1013 (1018)
.+.++..+--+..-....+.+...|.+
T Consensus 496 ~v~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (600)
T 2ywe_A 496 PVDALSFIVHADRAQKFARRVAEKLRE 522 (600)
T ss_dssp BCGGGCEEEEGGGHHHHHHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 953310201067899999999999872
No 5
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=1.00 E-value=1 Score=276.77 Aligned_cols=450 Identities=22% Similarity=0.268 Sum_probs=319.7
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHCCC-CC--------------CCCCCCCEEEEEEEEEEEEC-CCCEECEEEEECCCC
Q ss_conf 999899999289999789999998086-32--------------32358821343059999721-995021999929996
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKTK-VA--------------AAEAGGITQGIGAYKVQVPV-DGKLQPCVFLDTPGH 552 (1018)
Q Consensus 489 ~r~pkVaIIGhvdsGKTTLLn~L~k~k-v~--------------~se~gGiTqdI~a~~V~i~~-dgk~~~ItLIDTPGH 552 (1018)
.+.++|+|+||+|||||||+++|+... .. .....|+|+......+.+.. ++..+.++|||||||
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh 81 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGH 81 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCEEEEEEEEEEEECCCCCEEEEEEEECCCC
T ss_conf 98729999999999899999999973599654332220146642332056036556999998637897589999989894
Q ss_pred CCHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHC-CCCCCCCCCC
Q ss_conf 410788995210378899999548999843899999999829999999966788999938999999852-9888887999
Q 001745 553 EAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-GLMPEDWGGD 631 (1018)
Q Consensus 553 E~F~~~r~rgl~~ADiVILVVDAsdGv~~QT~E~I~~lk~~gIPIIVVINKiDl~~a~~erv~~eL~e~-gl~~e~~gg~ 631 (1018)
++|..++.+++..+|++|||+|+++|++.|+.+++..+...++|+|+++||+|+..++.+++..++... ++. .
T Consensus 82 ~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~------~ 155 (599)
T 3cb4_D 82 VDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGID------A 155 (599)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCC------C
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCC------C
T ss_conf 6778999999987999999997998987778999999997799789854036754333789999999874777------5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEEECCCEEEECC--CEEE
Q ss_conf 85999713899995899999999999864202887887413999753148894899996721992398999845--0468
Q 001745 632 IPMVQISALKGEKVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE--AFGK 709 (1018)
Q Consensus 632 vpvV~ISAktGeGIdeLlE~Ii~lael~el~~~p~~~a~g~Vies~~dkg~G~VatglV~~GTLkvGD~Iv~G~--~~gK 709 (1018)
.+++++||++|.|+++|+++|... +..+..+++.++.+.|+++..+.+.|.+++++|.+|+|+.||.+.+.. ...+
T Consensus 156 ~~vi~vSAktg~GI~~Ll~~I~~~--lp~p~~~~~~p~~alI~d~~~d~~~G~v~~~rV~sG~l~~Gd~v~~~~~~~~~~ 233 (599)
T 3cb4_D 156 TDAVRCSAKTGVGVQDVLERLVRD--IPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVMSTGQTYN 233 (599)
T ss_dssp TTCEEECTTTCTTHHHHHHHHHHH--SCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESCEESSCEEEETTTCCEEE
T ss_pred CEEEEEECCCCCCCHHHHHHHHHC--CCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEEECEEECCCEEEECCCCCEEE
T ss_conf 307885212688832578887404--778544456775345641001566517999999708794699888615652147
Q ss_pred EEEEECC--CCCCCCCCCCCCCEEEE-CCC---CCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 9999646--89930136999637994-258---98778973899168689999999999999999885301898312442
Q 001745 710 VRALFDD--SGNRVDEAGPSIPVQII-GLN---GVPIAGDEFEVVDSLDVAREKAEARAFSLRNERISAKAGDGKVTLSS 783 (1018)
Q Consensus 710 VRsL~~~--~g~~V~~A~pg~~V~I~-Gl~---~~P~aGd~f~vv~se~~Ar~~a~~r~~~~r~~~~~~~~~~~~~~l~~ 783 (1018)
|..+... +...++++.+|+.+.+. |+. ++ ..||.+...++.. ...+..
T Consensus 234 v~~i~~~~~~~~~~~~~~aGdi~~~~~gi~~~~~~-~~GDtl~~~~~~~-------------------------~~~l~~ 287 (599)
T 3cb4_D 234 ADRLGIFTPKQVDRTELKCGEVGWLVCAIKDIHGA-PVGDTLTLARNPA-------------------------EKALPG 287 (599)
T ss_dssp CCEEEEESSSEEECSEECTTCEEEEECCCSSGGGS-CTTCEEEESSSCC-------------------------SSCCTT
T ss_pred EEEEEECCCCCEECCEECCCCEEEEECCCCCCCCC-CCCCEEEECCCCC-------------------------CCCCCC
T ss_conf 86542035774298888489836715065531237-5688764067753-------------------------223234
Q ss_pred HHHHHHCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 47776419667878621339999188750999999998279997079999835687887529989843988999569999
Q 001745 784 LASAVSAGKLSGLDLHQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVASKAIILGFNVKAP 863 (1018)
Q Consensus 784 ~~~~~~~~~~~~~~~~~l~iIiKaDv~GSlEAI~~~L~~l~~~~v~i~vi~~~vG~ItesDV~lA~as~aiIigFNV~~~ 863 (1018)
+ ....+.+...+.+...+..+.+.++|.+|..+++.+.+. ..++.+++.||++...
T Consensus 288 ~----------~~~~P~v~~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~--------------~et~~~l~~gfr~g~l 343 (599)
T 3cb4_D 288 F----------KKVKPQVYAGLFPVSSDDYEAFRDALGKLSLNDASLFYE--------------PESSSALGFGFRCGFL 343 (599)
T ss_dssp C----------CCCCCCEEEEEEESSGGGHHHHHHHHHHHHTTCSSCEEE--------------EEEETTTEEEEEEEES
T ss_pred C----------CCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCEEEEE--------------ECCCCCCCCCEEEEEC
T ss_conf 4----------578861578998458667899999999988549679999--------------6353113551699844
Q ss_pred HH-----HHHHHHH-CCCEEEEEC--HHHHHHHHHHHHHHC---------CCCCC----EEEEEEEEEEEE--EE-----
Q ss_conf 33-----7868773-396598811--484899999999960---------24552----012466768998--98-----
Q 001745 864 GS-----VKTYADN-KGVEIRLYR--VIYDLIDDMRNAMEG---------LLETV----EEQVPIGSAEVR--AI----- 915 (1018)
Q Consensus 864 ~~-----a~~~A~~-~gV~Ir~~~--VIY~Liddik~~l~~---------~l~p~----~~e~~~G~AeV~--~v----- 915 (1018)
.. +.+..++ .|+++.... |+|+-. ++ .| .++.. .-.+++-.++|. .-
T Consensus 344 G~lhlei~~erl~~e~~~~~~~~~P~V~yret--i~---~g~~~~~~~p~~~p~~~~~~~llEP~~~~~i~~P~e~~G~v 418 (599)
T 3cb4_D 344 GLLHMEIIQERLEREYDLDLITTAPTVVYEVE--TT---SREVIYVDSPSKLPAVNNIYELREPIAECHMLLPQAYLGNV 418 (599)
T ss_dssp SHHHHHHHHHHHHHTSCCCEEECCCEECEEEE--ES---SSCEEEESSGGGSCCGGGEEEEEEEEEEEEEEEEGGGHHHH
T ss_pred CHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEE--EC---CCCEEEECCHHHCCCCCCCCHHHCCCEEEEEEECHHHHHHH
T ss_conf 58799999999998709469998304778998--65---89669965866588866556411650389999288899999
Q ss_pred ---EECCCCEEEEEEEEEEEEEECCCEEEEECCEEEEEEEEEEE-ECCCCCCCCCCCCC-EEEEEECCCCCC--------
Q ss_conf ---50699439989986305740991899539979999998543-11343233001686-469997168999--------
Q 001745 916 ---FSSGSGRVAGCMVSEGKLVKGCGIRVIRDGKTVHVGVLDSL-RRVKENVKEVNAGL-ECGVGAADYDDL-------- 982 (1018)
Q Consensus 916 ---F~~~~g~VAGc~V~~G~i~~~~~vrviR~g~vi~~G~I~SL-kr~KddV~ev~~G~-ECGI~l~~f~d~-------- 982 (1018)
.....|.+.|..-..| . + .+.|+-.++.| ..|-++.+....|+ .+-..|.+|...
T Consensus 419 ~~~~~~rrG~~~~~~~~~~------~--~----~i~~~~P~~e~~~~~~~~l~s~T~G~~~~~~~~~~y~~~~~~~~~~~ 486 (599)
T 3cb4_D 419 ITLCVEKRGVQTNMVYHGN------Q--V----ALTYEIPMAEVVLDFFDRLKSTSRGYASLDYNFKRFQASDMVRVDVL 486 (599)
T ss_dssp HHHHHHTTCEEEEEECCTT------E--E----EEEEEEEHHHHHTTTHHHHHHHTTSCCEEEEEEEEEEECCEEEEEEE
T ss_pred HHHHHHCCCEEECCEECCC------E--E----EEEEEECHHHHHHHHHHHHHHCCCCEEEEEEEECCCEEECCCCCCCC
T ss_conf 9999872818757386388------4--9----99999637998888989604027767999998547468212154311
Q ss_pred CCCCEEEEEEEEEEEHHHHHHHHHHHHHHHH
Q ss_conf 9998999999899401188999999986310
Q 001745 983 EEGDIIEAFNSIQRKRTLEEASASMASALEG 1013 (1018)
Q Consensus 983 ~~GD~Ie~y~~~e~~r~l~~~~~~~~~~~~~ 1013 (1018)
.-|+.+.++..+--+..-....+.+...|.+
T Consensus 487 ~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (599)
T 3cb4_D 487 INGERVDALALITHRDNSQNRGRELVEKMKD 517 (599)
T ss_dssp ETTEEEEEEEEEEEGGGHHHHHHHHHHHHHH
T ss_pred CCCCEECCCCEECCHHHHHHHHHHHHHHHHH
T ss_conf 3896864200010388899999999999975
No 6
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=1.00 E-value=1 Score=272.96 Aligned_cols=251 Identities=27% Similarity=0.321 Sum_probs=199.6
Q ss_pred CCCCEEEEEECCCCCHHHHHHHHHCCC-------CCCCCCCCCEEEEEEEEEEEECCCCEECEEEEECCCCCCHHHHHHH
Q ss_conf 999899999289999789999998086-------3232358821343059999721995021999929996410788995
Q 001745 489 DRPPVLTIMGHVDHGKTTLLDHIRKTK-------VAAAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPGHEAFGAMRAR 561 (1018)
Q Consensus 489 ~r~pkVaIIGhvdsGKTTLLn~L~k~k-------v~~se~gGiTqdI~a~~V~i~~dgk~~~ItLIDTPGHE~F~~~r~r 561 (1018)
.+.++|+++||+|||||||+++|.+.. ...+...|+|+++.+..+.+ .++.++|||||||++|..++.+
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~----~~~~i~iiDtPGh~~~~~~~~~ 92 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL----ENYRITLVDAPGHADLIRAVVS 92 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE----TTEEEEECCCSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCEEEEEE----CCEEEEEEECCCHHHHHHHHHH
T ss_conf 898899999999982999999997887641125552233576178305699998----9979999989886999999998
Q ss_pred HHCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCC-HHHHHHHHHHCCCCCCCCCCCCCEEEEECC
Q ss_conf 2103788999995489998438999999998299999999667889999-389999998529888887999859997138
Q 001745 562 GARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGAN-PERVMQELSSIGLMPEDWGGDIPMVQISAL 640 (1018)
Q Consensus 562 gl~~ADiVILVVDAsdGv~~QT~E~I~~lk~~gIPIIVVINKiDl~~a~-~erv~~eL~e~gl~~e~~gg~vpvV~ISAk 640 (1018)
++..+|+++||+|+++|+++|+.+++..+...++|+|+++||+|+.+.. .+.+..++..+--....+ ...+++++||+
T Consensus 93 ~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~-~~~~ii~vSA~ 171 (482)
T 1wb1_A 93 AADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNL-KNSSIIPISAK 171 (482)
T ss_dssp HTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSG-GGCCEEECCTT
T ss_pred HHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCC-CCCEEEEEECC
T ss_conf 88449999999956878657789999999984998899997877322015899999999998641355-56319998776
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEEECCCEEEECC--CEEEEEEEECCCC
Q ss_conf 99995899999999999864202887887413999753148894899996721992398999845--0468999964689
Q 001745 641 KGEKVDDLLETIMLVAELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE--AFGKVRALFDDSG 718 (1018)
Q Consensus 641 tGeGIdeLlE~Ii~lael~el~~~p~~~a~g~Vies~~dkg~G~VatglV~~GTLkvGD~Iv~G~--~~gKVRsL~~~~g 718 (1018)
+|+|+++|+++|....+...+...++.++...|.+++..++.|+++++.|.+|+|++||.+.+.+ ...+|++|+.+ +
T Consensus 172 ~g~gI~~L~~~L~~~i~~~~~~~~~~~~~~~~v~~v~~~~g~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~-~ 250 (482)
T 1wb1_A 172 TGFGVDELKNLIITTLNNAEIIRNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPINMSTKVRSIQYF-K 250 (482)
T ss_dssp TCTTHHHHHHHHHHHHHHSCCCCCSSSCCBCBCSCEECCSSCCCEECCCCCBSCCCSSEEECCTTTCCCEEECCBCGG-G
T ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEEEEEECCEEEECCCCCEEEEEEEEEC-C
T ss_conf 798879999999876127644565212555311158996488349999998769960999999999968999299999-9
Q ss_pred CCCCCCCCCCCEEEE--CCCC-CCCCCCEE
Q ss_conf 930136999637994--2589-87789738
Q 001745 719 NRVDEAGPSIPVQII--GLNG-VPIAGDEF 745 (1018)
Q Consensus 719 ~~V~~A~pg~~V~I~--Gl~~-~P~aGd~f 745 (1018)
+.+++|.||++|.+. |++. ....||.+
T Consensus 251 ~~v~~a~~G~~v~~~l~~~~~~~i~~Gdvl 280 (482)
T 1wb1_A 251 ESVMEAKAGDRVGMAIQGVDAKQIYRGXIL 280 (482)
T ss_dssp SCBCCCCSSCCCCEECSSCCSSCCCSSCBC
T ss_pred EEEEEECCCCEEEEEECCCCHHHCCCCCEE
T ss_conf 085072599989999669978631565267
No 7
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=270.32 Aligned_cols=246 Identities=22% Similarity=0.262 Sum_probs=190.0
Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHCCC-------------------------------CCCCCCCCCEEEEEEEEEEEE
Q ss_conf 7999899999289999789999998086-------------------------------323235882134305999972
Q 001745 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTK-------------------------------VAAAEAGGITQGIGAYKVQVP 536 (1018)
Q Consensus 488 ~~r~pkVaIIGhvdsGKTTLLn~L~k~k-------------------------------v~~se~gGiTqdI~a~~V~i~ 536 (1018)
.+..++|+|+||+|||||||+++|+... ......+|+|+++..+.+..
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~- 252 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES- 252 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHCCCEEEEEEEEEEEE-
T ss_conf 8985189998589998899999999871885467889887767651875201344422534441388169753899971-
Q ss_pred CCCCEECEEEEECCCCCCHHHHHHHHHCCCCEEEEEEECCCCC-------CHHHHHHHHHHHHCCCC-EEEEEECCCCCC
Q ss_conf 1995021999929996410788995210378899999548999-------84389999999982999-999996678899
Q 001745 537 VDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGI-------RPQTNEAIAHAKAAGVP-IVIAINKIDKDG 608 (1018)
Q Consensus 537 ~dgk~~~ItLIDTPGHE~F~~~r~rgl~~ADiVILVVDAsdGv-------~~QT~E~I~~lk~~gIP-IIVVINKiDl~~ 608 (1018)
.++.++|||||||+.|..++.+++..+|++|||||+++|. ++||.+++..+...++| +|+++||+|+..
T Consensus 253 ---~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~ 329 (592)
T 3mca_A 253 ---DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMS 329 (592)
T ss_dssp ---------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGT
T ss_pred ---CCEEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCC
T ss_conf ---99489999899828889999988865899999997887752224465557999999999839984999996346655
Q ss_pred CCHHHH---HHHHHH-----CCCCCCCCCCCCCEEEEECCCCCCHH--------------HHHHHHHHHHHHHHHHCCCC
Q ss_conf 993899---999985-----29888887999859997138999958--------------99999999999864202887
Q 001745 609 ANPERV---MQELSS-----IGLMPEDWGGDIPMVQISALKGEKVD--------------DLLETIMLVAELQELKANPH 666 (1018)
Q Consensus 609 a~~erv---~~eL~e-----~gl~~e~~gg~vpvV~ISAktGeGId--------------eLlE~Ii~lael~el~~~p~ 666 (1018)
++.+++ ..++.. +++.. ..++++++||++|.||. .|++.|..+ .......+
T Consensus 330 ~~~~~~~~i~~el~~~l~~~~g~~~----~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~---~pp~~~~~ 402 (592)
T 3mca_A 330 WSEDRFQEIKNIVSDFLIKMVGFKT----SNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQL---VPPEKPYR 402 (592)
T ss_dssp TCHHHHHHHHHHHHHHHTTTSCCCG----GGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTS---CCCSCTTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCC----CCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH---CCCCCCCC
T ss_conf 4378999999999999987508886----6248999754557543345432212235407899999752---06555555
Q ss_pred CCCCCEEEEEEEECCCCCEEEEEEEEEEEECCCEEEECC--CEEEEEEEECCCCCCCC-CCCCCCCEEEE--CCCCC-CC
Q ss_conf 887413999753148894899996721992398999845--04689999646899301-36999637994--25898-77
Q 001745 667 RNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE--AFGKVRALFDDSGNRVD-EAGPSIPVQII--GLNGV-PI 740 (1018)
Q Consensus 667 ~~a~g~Vies~~dkg~G~VatglV~~GTLkvGD~Iv~G~--~~gKVRsL~~~~g~~V~-~A~pg~~V~I~--Gl~~~-P~ 740 (1018)
.++...|.+++.. +.|++++|+|.+|+|++||.|.+.+ ...+|++|+.+ ++.++ +|.||++|.+. |++.. -.
T Consensus 403 ~p~r~~v~~v~~~-~~g~v~~G~v~~G~l~~Gd~v~i~p~~~~~~V~~i~~~-~~~~~~~a~aG~~v~~~l~~i~~~~i~ 480 (592)
T 3mca_A 403 KPLRLSIDDVYRS-PRSVTVTGRVEAGNVQVNQVLYDVSSQEDAYVKNVIRN-SDPSSTWAVAGDTVTLQLADIEVNQLR 480 (592)
T ss_dssp SCCEEEEEEEEEE-TTEEEEEEEEEESEEETTCEEEETTTTEEEEEEEEECS-SSCSCCEEETTCEEEEEESSSCGGGCC
T ss_pred CCCHHEEEEEEEC-CCEEEEEEEEEEEEECCCCEEEECCCCCEEEEEEEEEC-CCCCCCEECCCCEEEEEECCCCCCCCC
T ss_conf 5600124689955-98299999994136736988999169946899999975-845763406898899997253002331
Q ss_pred CCCEEE
Q ss_conf 897389
Q 001745 741 AGDEFE 746 (1018)
Q Consensus 741 aGd~f~ 746 (1018)
-|+.+.
T Consensus 481 rG~vl~ 486 (592)
T 3mca_A 481 PGDILS 486 (592)
T ss_dssp TTCEEE
T ss_pred EEEEEC
T ss_conf 378852
No 8
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=1.00 E-value=1 Score=268.76 Aligned_cols=239 Identities=26% Similarity=0.377 Sum_probs=182.2
Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHCCC-------------------------------CCCCCCCCCEEEEEEEEEEEE
Q ss_conf 7999899999289999789999998086-------------------------------323235882134305999972
Q 001745 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTK-------------------------------VAAAEAGGITQGIGAYKVQVP 536 (1018)
Q Consensus 488 ~~r~pkVaIIGhvdsGKTTLLn~L~k~k-------------------------------v~~se~gGiTqdI~a~~V~i~ 536 (1018)
.+..++|+++||+|||||||+++|+... .......|+|+++..+.+..
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~- 92 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET- 92 (439)
T ss_pred CCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHCCCEEEEEEEEEEC-
T ss_conf 9862399999389999899999999873997667888888888750666222455433655676069439875899961-
Q ss_pred CCCCEECEEEEECCCCCCHHHHHHHHHCCCCEEEEEEECCCCCC-------HHHHHHHHHHHHCCCC-EEEEEECCCCCC
Q ss_conf 19950219999299964107889952103788999995489998-------4389999999982999-999996678899
Q 001745 537 VDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIR-------PQTNEAIAHAKAAGVP-IVIAINKIDKDG 608 (1018)
Q Consensus 537 ~dgk~~~ItLIDTPGHE~F~~~r~rgl~~ADiVILVVDAsdGv~-------~QT~E~I~~lk~~gIP-IIVVINKiDl~~ 608 (1018)
.++.++|||||||++|..++..++..+|++|||+|+++|.+ +|+.+++..+...++| +|+++||+|+..
T Consensus 93 ---~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 93 ---EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPT 169 (439)
T ss_pred ---CCEEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCC
T ss_conf ---98579999899707889999854856899999998997841145677743899999999849984899753478766
Q ss_pred CC--H---HHHHHHHH----HCCCCCCCCCCCCCEEEEECCCCCCHHHHHHH--------HHHH-HHHHHHHCCCCCCCC
Q ss_conf 99--3---89999998----52988888799985999713899995899999--------9999-998642028878874
Q 001745 609 AN--P---ERVMQELS----SIGLMPEDWGGDIPMVQISALKGEKVDDLLET--------IMLV-AELQELKANPHRNAK 670 (1018)
Q Consensus 609 a~--~---erv~~eL~----e~gl~~e~~gg~vpvV~ISAktGeGIdeLlE~--------Ii~l-ael~el~~~p~~~a~ 670 (1018)
.+ . +.+..++. .+++... .+++++++||++|+|++++++. +... ..+.......+.++.
T Consensus 170 ~~~~~~~~~~i~~~~~~~l~~~g~~~~---~~~~~i~iSA~~G~ni~~l~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~r 246 (439)
T 3j2k_7 170 VNWSNERYEECKEKLVPFLKKVGFNPK---KDIHFMPCSGLTGANLKEQSDFCPWYIGLPFIPYLDNLPNFNRSVDGPIR 246 (439)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCC---CCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEE
T ss_conf 225799999999999999987423545---77059996435775531123345446726799999747897667778728
Q ss_pred CEEEEEEEECCCCCEEEEEEEEEEEECCCEEEECC--CEEEEEEEECCCCCCCCCCCCCCCEE--EECCC
Q ss_conf 13999753148894899996721992398999845--04689999646899301369996379--94258
Q 001745 671 GTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCGE--AFGKVRALFDDSGNRVDEAGPSIPVQ--IIGLN 736 (1018)
Q Consensus 671 g~Vies~~dkg~G~VatglV~~GTLkvGD~Iv~G~--~~gKVRsL~~~~g~~V~~A~pg~~V~--I~Gl~ 736 (1018)
..|.+++ ++.|++++|+|.+|+|++||.+.+.+ ...+|++|+.+ ++.+++|.||+.|. +.|++
T Consensus 247 ~~v~~~~--~~~G~v~~G~v~~G~l~~Gd~v~~~p~~~~~~V~~i~~~-~~~~~~a~aG~~v~~~l~gi~ 313 (439)
T 3j2k_7 247 LPIVDKY--KDMGTVVLGKLESGSIFKGQQLVMMPNKHNVEVLGILSD-DTETDFVAPGENLKIRLKGIE 313 (439)
T ss_pred EEEEEEE--CCCCEEEEEEEEEEEEECCCEEEECCCCCEEEEEEEEEC-CEECCEECCCCCCEEEEECCC
T ss_conf 9999897--499759999997347954999997358945788999778-807377328985468992355
No 9
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=1.00 E-value=1 Score=268.43 Aligned_cols=342 Identities=20% Similarity=0.265 Sum_probs=242.5
Q ss_pred CCCCCEEEEEECCCCCHHHHHHHHHCCC----------------------CCCCCCCCCEEEEEEEEEEEECCCCEECEE
Q ss_conf 7999899999289999789999998086----------------------323235882134305999972199502199
Q 001745 488 EDRPPVLTIMGHVDHGKTTLLDHIRKTK----------------------VAAAEAGGITQGIGAYKVQVPVDGKLQPCV 545 (1018)
Q Consensus 488 ~~r~pkVaIIGhvdsGKTTLLn~L~k~k----------------------v~~se~gGiTqdI~a~~V~i~~dgk~~~It 545 (1018)
..|.++|+|+||+|||||||.++|+... ......+|||+......+ .| +++.|+
T Consensus 28 ~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~--~~--~~~~iN 103 (548)
T 3vqt_A 28 AARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQF--PY--RDRVVN 103 (548)
T ss_dssp HHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEE--EE--TTEEEE
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCHHHHHHCCCCEEECEEEE--EE--CCEEEE
T ss_conf 13666699990899889999999998668632154164376655433677288987797475046999--87--998999
Q ss_pred EEECCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHC-CCC
Q ss_conf 9929996410788995210378899999548999843899999999829999999966788999938999999852-988
Q 001745 546 FLDTPGHEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-GLM 624 (1018)
Q Consensus 546 LIDTPGHE~F~~~r~rgl~~ADiVILVVDAsdGv~~QT~E~I~~lk~~gIPIIVVINKiDl~~a~~erv~~eL~e~-gl~ 624 (1018)
|||||||.+|.....+.++.+|++|+||||.+|+++||...++++...++|+|+++||||+.++++.++..++.+. +..
T Consensus 104 lIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ad~~~~~~~i~~~l~~~ 183 (548)
T 3vqt_A 104 LLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALHPLDVMADIEQHLQIE 183 (548)
T ss_dssp EECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCCCHHHHHHHHHHHHTSE
T ss_pred EEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCHHCCHHHHHHHHHHHCCCC
T ss_conf 99698827778999999975680599830588730441889999987187369887346601102667544555423882
Q ss_pred C----------------------------CC-------------------------------------------------
Q ss_conf 8----------------------------88-------------------------------------------------
Q 001745 625 P----------------------------ED------------------------------------------------- 627 (1018)
Q Consensus 625 ~----------------------------e~------------------------------------------------- 627 (1018)
. ..
T Consensus 184 ~~p~~~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~ 263 (548)
T 3vqt_A 184 CAPMTWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQLRMDLALLEEAGTPFDEERY 263 (548)
T ss_dssp EEESEEEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGHHHHHHHHHHHHHHCCCCCHHHH
T ss_pred EEEEEEEEECCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 47677225158853305765313432104233786432323223543889998888888766689887540573649999
Q ss_pred -CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH-------CCCCCCCCCEEEEEEEE---CCCCCEEEEEEEEEEEE
Q ss_conf -79998599971389999589999999999986420-------28878874139997531---48894899996721992
Q 001745 628 -WGGDIPMVQISALKGEKVDDLLETIMLVAELQELK-------ANPHRNAKGTVIEAGLH---KSKGPVATFILQNGTLK 696 (1018)
Q Consensus 628 -~gg~vpvV~ISAktGeGIdeLlE~Ii~lael~el~-------~~p~~~a~g~Vies~~d---kg~G~VatglV~~GTLk 696 (1018)
-+.-+|+++.||+++.|+..|++.|.......... ...+.++.+.|++...+ ...|.+++++|.+|+|+
T Consensus 264 ~~g~~~PV~~gSA~~~~Gv~~LLd~iv~~~PsP~~~~~~~~~~~~~~~p~~a~vfKi~~~~~~~~~Grla~~RV~sG~l~ 343 (548)
T 3vqt_A 264 LKGELTPVFFGSAINNFGVREMLDMFVEFAPGPQPRPAATRVVEPGEEAFTGVVFKIQANMDKAHRDRMAFLRICSGTFT 343 (548)
T ss_dssp HTTSEEEEEECBGGGTBSHHHHHHHHHHHSCCSCCEEBSSSEECTTCSSCEEEEEEEECC-------CEEEEEEEESCEE
T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEEECCEEC
T ss_conf 82983102614545585899999999974799877543234558997674379999970577677876999998535445
Q ss_pred CCCEEEECC--CEEEEEE---EECCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 398999845--0468999---96468993013699963799425898778973899168689999999999999999885
Q 001745 697 KGDVVVCGE--AFGKVRA---LFDDSGNRVDEAGPSIPVQIIGLNGVPIAGDEFEVVDSLDVAREKAEARAFSLRNERIS 771 (1018)
Q Consensus 697 vGD~Iv~G~--~~gKVRs---L~~~~g~~V~~A~pg~~V~I~Gl~~~P~aGd~f~vv~se~~Ar~~a~~r~~~~r~~~~~ 771 (1018)
.|+.|.... ...+|.. ++......+++|.||+++.|.|+.++ ..||.+.....
T Consensus 344 ~g~~v~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~-~~GDTl~~~~~--------------------- 401 (548)
T 3vqt_A 344 RGMRLKHHRTGKDVTVANATIFMAQDRTGVEEAFPGDIIGIPNHGTI-KIGDTFTESKE--------------------- 401 (548)
T ss_dssp TTCEEEETTTTEEEECTTCEECCCSSCCSSCEECTTCEEEEECSSCC-CTTCEEESSSS---------------------
T ss_pred CCCEEEEECCCCCCCCCHHHHHCCCCCCCCCEEECCCEEEECCCCCC-CCCCEECCCCC---------------------
T ss_conf 89989841233300001133420566643678846989985687667-63788168987---------------------
Q ss_pred HHCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHC
Q ss_conf 30189831244247776419667878621339999188750999999998279997079999835687887529989843
Q 001745 772 AKAGDGKVTLSSLASAVSAGKLSGLDLHQLNVIMKVDVQGSIEAVRQALQVLPQDNVTLKFLLQATGDISASDVDLAVAS 851 (1018)
Q Consensus 772 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~iIiKaDv~GSlEAI~~~L~~l~~~~v~i~vi~~~vG~ItesDV~lA~as 851 (1018)
...+..+ .+..+.+.+-+.+...+..+.+..+|.+|..++. +.+.... .+
T Consensus 402 ------~~~~~~i----------~~~~P~~~~av~p~~~~d~~kl~~~L~~L~eed~-~~v~~~~-------------et 451 (548)
T 3vqt_A 402 ------VLKFVGI----------PNFAPEHFRRVRLKNPLKAKQLQKGLEQLAEEGA-VQLFRPL-------------VN 451 (548)
T ss_dssp ------CCCBCCC----------EEECCSEEEEEEESCGGGHHHHHHHHHHHHHTTS-SEEEEES-------------SS
T ss_pred ------CCCCCCC----------CCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCC-EEEEEEC-------------CC
T ss_conf ------6545788----------9999850112465792069999999997644586-0599988-------------89
Q ss_pred CCEEEEECCCCC--HHHHHHHHHCCCEEEE-------ECHHHH
Q ss_conf 988999569999--3378687733965988-------114848
Q 001745 852 KAIILGFNVKAP--GSVKTYADNKGVEIRL-------YRVIYD 885 (1018)
Q Consensus 852 ~aiIigFNV~~~--~~a~~~A~~~gV~Ir~-------~~VIY~ 885 (1018)
+-.||++-=..- --...+.++.||++.. -.|+|.
T Consensus 452 ~e~il~g~GeLHLeI~~erL~~ey~vev~~e~v~~~~P~V~Yr 494 (548)
T 3vqt_A 452 NDYILGAVGVLQFDVIVARLADEYGVDAVYEGVSTHTARWVYC 494 (548)
T ss_dssp CCCEEEESSTHHHHHHHHHHHHHHCCCEEEEECSCCEEEEEEC
T ss_pred CCEEEEEECHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEC
T ss_conf 9689998789999999999999859977974246567267846
No 10
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=1.00 E-value=1 Score=267.64 Aligned_cols=239 Identities=26% Similarity=0.306 Sum_probs=187.8
Q ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCCC------------------CCCCCCCEEEEEEEEEEEECCCCEECEEEEECCC
Q ss_conf 9989999928999978999999808632------------------3235882134305999972199502199992999
Q 001745 490 RPPVLTIMGHVDHGKTTLLDHIRKTKVA------------------AAEAGGITQGIGAYKVQVPVDGKLQPCVFLDTPG 551 (1018)
Q Consensus 490 r~pkVaIIGhvdsGKTTLLn~L~k~kv~------------------~se~gGiTqdI~a~~V~i~~dgk~~~ItLIDTPG 551 (1018)
|.+||+|+||+|||||||.++|+..... ....+|||+...... +.++++.|+|+||||
T Consensus 1 kIRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~----~~~~~~~iNlIDTPG 76 (638)
T 3j25_A 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITS----FQWENTKVNIIDTPG 76 (638)
T ss_dssp CCCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCC----CBCSSCBCCCEECCC
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEEEEE----EEECCEEEEEEECCC
T ss_conf 9569999948999989999999997499751532126874568848898679768952599----998998999997988
Q ss_pred CCCHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHC-CCCC-----
Q ss_conf 6410788995210378899999548999843899999999829999999966788999938999999852-9888-----
Q 001745 552 HEAFGAMRARGARVTDIAVIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINKIDKDGANPERVMQELSSI-GLMP----- 625 (1018)
Q Consensus 552 HE~F~~~r~rgl~~ADiVILVVDAsdGv~~QT~E~I~~lk~~gIPIIVVINKiDl~~a~~erv~~eL~e~-gl~~----- 625 (1018)
|.+|...+.++++.+|++|+||||.+|+++||..+++++...++|.|+++||||+..++..+...++.+. +...
T Consensus 77 H~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~ 156 (638)
T 3j25_A 77 HMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQK 156 (638)
T ss_dssp SSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCC
T ss_pred CHHHHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCE
T ss_conf 17889999999998598999996898974789999999997599828998423545689999999999986787321431
Q ss_pred -C--------C-----------------------------------------CCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf -8--------8-----------------------------------------7999859997138999958999999999
Q 001745 626 -E--------D-----------------------------------------WGGDIPMVQISALKGEKVDDLLETIMLV 655 (1018)
Q Consensus 626 -e--------~-----------------------------------------~gg~vpvV~ISAktGeGIdeLlE~Ii~l 655 (1018)
+ . .+.-.|+++.||+++.|++.|++.|...
T Consensus 157 ~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~ 236 (638)
T 3j25_A 157 VELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNK 236 (638)
T ss_dssp CCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHS
T ss_pred EEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCC
T ss_conf 57633421112215666445540667787653067756667788887664024521463234342587834276543203
Q ss_pred HHHHHHHCCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEEECCCEEEEC-CCEEEEEEEECCCC---CCCCCCCCCCCEE
Q ss_conf 9986420288788741399975314889489999672199239899984-50468999964689---9301369996379
Q 001745 656 AELQELKANPHRNAKGTVIEAGLHKSKGPVATFILQNGTLKKGDVVVCG-EAFGKVRALFDDSG---NRVDEAGPSIPVQ 731 (1018)
Q Consensus 656 ael~el~~~p~~~a~g~Vies~~dkg~G~VatglV~~GTLkvGD~Iv~G-~~~gKVRsL~~~~g---~~V~~A~pg~~V~ 731 (1018)
+......+..++.+.|+++..++.+|.+++++|.+|+|+.|+.+... ....+|..++...+ ..+++|.||+.+.
T Consensus 237 --~p~p~~~~~~~~~~~Vfk~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~ 314 (638)
T 3j25_A 237 --FYSSTHRGPSELCGNVFKIEYTKKRQRLAYIRLYSGVLHLRDSVRVSEKEKIKVTEMYTSINGELCKIDRAYSGEIVI 314 (638)
T ss_dssp --CCCSGGGSCCCCCBEEBCCCCCSTTCCCCBCCBSSBCCCSCCCSSSCCCCCSSBCCCCSSCCCCBSCCCTTBCCCCSC
T ss_pred --CCCCCCCHHHHHCCEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEE
T ss_conf --667510001111214555442115855999999738633787443456753168753012456554225113130899
Q ss_pred EEC
Q ss_conf 942
Q 001745 732 IIG 734 (1018)
Q Consensus 732 I~G 734 (1018)
+.|
T Consensus 315 i~g 317 (638)
T 3j25_A 315 LQN 317 (638)
T ss_dssp CCS
T ss_pred EEC
T ss_conf 965
Done!