Query 001746
Match_columns 1018
No_of_seqs 600 out of 3515
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 08:21:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001746.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001746hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0733 Nuclear AAA ATPase (VC 100.0 4.3E-76 9.3E-81 670.3 43.3 475 472-1011 270-794 (802)
2 KOG0730 AAA+-type ATPase [Post 100.0 4.6E-70 1E-74 630.3 37.7 410 472-991 265-681 (693)
3 TIGR01243 CDC48 AAA family ATP 100.0 2.1E-59 4.6E-64 574.4 43.1 462 472-1007 259-731 (733)
4 KOG0737 AAA+-type ATPase [Post 100.0 4.9E-58 1.1E-62 504.0 28.5 368 637-1011 4-386 (386)
5 KOG0736 Peroxisome assembly fa 100.0 2.7E-55 5.8E-60 510.6 44.3 450 472-991 478-939 (953)
6 COG0464 SpoVK ATPases of the A 100.0 2.3E-50 4.9E-55 474.6 36.3 418 471-989 63-488 (494)
7 KOG0741 AAA+-type ATPase [Post 100.0 2.4E-51 5.3E-56 461.8 24.5 346 486-910 326-684 (744)
8 KOG0738 AAA+-type ATPase [Post 100.0 5.9E-49 1.3E-53 431.7 25.9 281 722-1007 205-490 (491)
9 COG1222 RPT1 ATP-dependent 26S 100.0 3.2E-48 6.9E-53 424.5 24.2 247 723-987 145-395 (406)
10 KOG0735 AAA+-type ATPase [Post 100.0 2E-45 4.3E-50 424.8 37.8 401 472-958 482-894 (952)
11 KOG0733 Nuclear AAA ATPase (VC 100.0 9.8E-46 2.1E-50 422.5 20.1 286 724-1012 185-521 (802)
12 KOG0739 AAA+-type ATPase [Post 100.0 3.5E-44 7.7E-49 382.7 19.6 287 717-1009 121-439 (439)
13 CHL00195 ycf46 Ycf46; Provisio 100.0 3.7E-38 8E-43 368.6 39.0 259 723-1005 222-484 (489)
14 KOG0734 AAA+-type ATPase conta 100.0 3.6E-40 7.7E-45 372.2 20.1 249 718-986 293-543 (752)
15 KOG0732 AAA+-type ATPase conta 100.0 1.2E-39 2.5E-44 396.0 17.5 362 473-914 352-728 (1080)
16 KOG0740 AAA+-type ATPase [Post 100.0 2.6E-38 5.7E-43 358.9 18.5 288 714-1009 139-427 (428)
17 KOG0728 26S proteasome regulat 100.0 8.7E-37 1.9E-41 319.9 21.4 247 724-989 142-393 (404)
18 KOG0652 26S proteasome regulat 100.0 3E-37 6.5E-42 324.7 17.7 245 723-986 165-414 (424)
19 KOG0727 26S proteasome regulat 100.0 2.1E-36 4.5E-41 317.3 21.0 246 722-985 148-397 (408)
20 COG1223 Predicted ATPase (AAA+ 100.0 2.1E-36 4.7E-41 318.8 20.3 243 725-989 117-360 (368)
21 KOG0731 AAA+-type ATPase conta 100.0 3.3E-36 7.1E-41 358.7 22.9 248 721-987 303-556 (774)
22 KOG0726 26S proteasome regulat 100.0 8.1E-37 1.8E-41 325.6 15.6 244 723-985 179-427 (440)
23 PTZ00454 26S protease regulato 100.0 2.3E-35 4.9E-40 338.3 25.8 247 723-987 139-389 (398)
24 KOG0729 26S proteasome regulat 100.0 1.8E-35 3.9E-40 312.1 17.5 246 722-986 170-420 (435)
25 PRK03992 proteasome-activating 100.0 1.6E-34 3.6E-39 331.2 25.4 251 723-991 125-379 (389)
26 KOG0730 AAA+-type ATPase [Post 100.0 2.7E-35 5.9E-40 342.1 16.8 263 725-1013 181-445 (693)
27 TIGR01241 FtsH_fam ATP-depende 100.0 1.8E-33 3.9E-38 331.8 24.9 269 722-1009 48-320 (495)
28 PTZ00361 26 proteosome regulat 100.0 2.1E-33 4.5E-38 324.6 24.1 246 723-986 177-426 (438)
29 COG0465 HflB ATP-dependent Zn 100.0 6.9E-34 1.5E-38 334.2 20.3 264 723-1005 144-415 (596)
30 TIGR01242 26Sp45 26S proteasom 100.0 1.5E-31 3.3E-36 304.0 24.9 245 722-984 115-363 (364)
31 TIGR03689 pup_AAA proteasome A 100.0 1.4E-31 3E-36 313.4 25.0 275 722-1011 175-504 (512)
32 TIGR01243 CDC48 AAA family ATP 100.0 6.6E-32 1.4E-36 332.1 23.1 285 724-1012 173-463 (733)
33 KOG0651 26S proteasome regulat 100.0 2.7E-32 5.9E-37 294.0 15.0 243 725-985 128-374 (388)
34 CHL00176 ftsH cell division pr 100.0 9.8E-31 2.1E-35 314.7 25.3 244 722-984 176-423 (638)
35 COG1222 RPT1 ATP-dependent 26S 100.0 1.6E-31 3.6E-36 293.4 15.4 243 175-691 144-395 (406)
36 PRK10733 hflB ATP-dependent me 100.0 7.9E-30 1.7E-34 308.9 24.2 250 722-990 145-398 (644)
37 KOG0732 AAA+-type ATPase conta 100.0 1E-29 2.2E-34 309.8 17.2 264 723-990 259-531 (1080)
38 KOG0737 AAA+-type ATPase [Post 100.0 2.5E-29 5.5E-34 277.7 15.8 277 161-691 71-362 (386)
39 KOG0741 AAA+-type ATPase [Post 100.0 1.8E-29 3.8E-34 285.8 14.5 264 725-991 215-497 (744)
40 CHL00206 ycf2 Ycf2; Provisiona 100.0 7.2E-29 1.6E-33 312.1 20.6 210 756-988 1623-1881(2281)
41 PLN00020 ribulose bisphosphate 99.9 3.7E-27 7.9E-32 263.0 20.1 189 761-953 145-355 (413)
42 KOG0738 AAA+-type ATPase [Post 99.9 4.6E-25 9.9E-30 243.9 18.0 269 163-691 194-472 (491)
43 COG0464 SpoVK ATPases of the A 99.9 1.9E-23 4.1E-28 246.6 18.2 260 161-691 217-486 (494)
44 TIGR02639 ClpA ATP-dependent C 99.9 3.2E-21 7E-26 237.6 33.1 389 472-954 262-716 (731)
45 KOG0739 AAA+-type ATPase [Post 99.9 3.9E-23 8.4E-28 222.1 12.8 234 163-645 115-350 (439)
46 KOG0736 Peroxisome assembly fa 99.9 1.2E-22 2.6E-27 238.8 15.4 248 762-1012 429-682 (953)
47 CHL00195 ycf46 Ycf46; Provisio 99.9 9.9E-22 2.2E-26 230.8 16.7 157 472-692 306-467 (489)
48 KOG0740 AAA+-type ATPase [Post 99.9 5.1E-22 1.1E-26 226.5 13.7 259 176-691 147-407 (428)
49 PTZ00454 26S protease regulato 99.9 7E-22 1.5E-26 227.3 14.4 155 472-691 226-389 (398)
50 KOG0728 26S proteasome regulat 99.9 1E-21 2.2E-26 207.0 13.2 157 472-690 228-390 (404)
51 PRK11034 clpA ATP-dependent Cl 99.9 1.4E-19 3E-24 222.0 31.7 389 471-955 265-721 (758)
52 KOG0731 AAA+-type ATPase conta 99.9 1.6E-21 3.4E-26 233.7 14.2 156 472-691 391-556 (774)
53 PRK03992 proteasome-activating 99.9 1.8E-21 3.9E-26 223.7 14.2 156 472-692 212-376 (389)
54 KOG0735 AAA+-type ATPase [Post 99.9 2.6E-21 5.6E-26 225.8 14.1 260 730-1012 409-677 (952)
55 KOG0734 AAA+-type ATPase conta 99.8 4.6E-21 1E-25 218.1 12.9 158 472-691 384-544 (752)
56 KOG0744 AAA+-type ATPase [Post 99.8 2E-20 4.4E-25 203.4 13.5 248 718-984 131-414 (423)
57 KOG0726 26S proteasome regulat 99.8 3.8E-21 8.2E-26 206.3 7.7 152 472-690 266-428 (440)
58 CHL00181 cbbX CbbX; Provisiona 99.8 1.4E-19 3.1E-24 200.3 19.2 237 729-979 23-281 (287)
59 PTZ00361 26 proteosome regulat 99.8 1.6E-20 3.4E-25 217.9 12.1 155 472-691 264-427 (438)
60 TIGR01241 FtsH_fam ATP-depende 99.8 2.9E-20 6.2E-25 220.0 12.0 155 472-691 135-298 (495)
61 CHL00206 ycf2 Ycf2; Provisiona 99.8 4.3E-20 9.3E-25 233.9 13.0 157 472-691 1720-1880(2281)
62 KOG0742 AAA+-type ATPase [Post 99.8 4.6E-19 1E-23 196.9 18.7 208 726-944 352-587 (630)
63 TIGR02880 cbbX_cfxQ probable R 99.8 5E-19 1.1E-23 195.7 18.4 237 730-980 23-281 (284)
64 PF00004 AAA: ATPase family as 99.8 2.6E-19 5.6E-24 172.1 13.4 130 767-898 1-132 (132)
65 TIGR02881 spore_V_K stage V sp 99.8 6.5E-19 1.4E-23 192.1 18.1 218 727-956 4-245 (261)
66 COG1223 Predicted ATPase (AAA+ 99.8 2.3E-19 5.1E-24 190.5 11.7 156 472-690 198-357 (368)
67 KOG0652 26S proteasome regulat 99.8 1.8E-18 4E-23 183.4 13.8 158 472-691 252-415 (424)
68 CHL00176 ftsH cell division pr 99.8 1.1E-18 2.4E-23 210.9 13.7 154 472-690 263-425 (638)
69 TIGR03689 pup_AAA proteasome A 99.8 1.5E-18 3.2E-23 204.3 14.1 123 472-641 273-406 (512)
70 KOG0729 26S proteasome regulat 99.8 1E-18 2.2E-23 185.8 9.7 151 472-691 258-421 (435)
71 COG0465 HflB ATP-dependent Zn 99.8 2.8E-18 6.1E-23 203.0 14.5 155 472-691 230-393 (596)
72 TIGR01242 26Sp45 26S proteasom 99.8 3.5E-18 7.7E-23 194.8 12.2 152 472-688 203-363 (364)
73 KOG0727 26S proteasome regulat 99.7 8E-18 1.7E-22 178.0 13.1 159 472-690 236-398 (408)
74 KOG0651 26S proteasome regulat 99.7 5.3E-18 1.2E-22 184.1 10.4 155 472-691 213-376 (388)
75 PRK10733 hflB ATP-dependent me 99.7 1.6E-17 3.4E-22 202.2 13.1 157 472-691 232-395 (644)
76 KOG0743 AAA+-type ATPase [Post 99.7 7.2E-17 1.6E-21 183.6 17.4 219 726-955 198-429 (457)
77 TIGR03345 VI_ClpV1 type VI sec 99.7 5.5E-15 1.2E-19 184.6 32.1 202 730-954 567-835 (852)
78 PLN00020 ribulose bisphosphate 99.7 1.9E-16 4E-21 177.8 14.0 122 472-622 195-326 (413)
79 CHL00095 clpC Clp protease ATP 99.7 8.5E-15 1.8E-19 183.0 30.3 209 730-955 510-787 (821)
80 TIGR00635 ruvB Holliday juncti 99.7 3.2E-15 7E-20 165.8 21.7 220 727-984 2-229 (305)
81 TIGR02639 ClpA ATP-dependent C 99.7 1.2E-15 2.6E-20 188.5 18.9 224 727-985 180-430 (731)
82 TIGR03346 chaperone_ClpB ATP-d 99.7 1.6E-14 3.4E-19 181.2 29.0 207 729-955 565-831 (852)
83 PRK00080 ruvB Holliday junctio 99.7 9.6E-15 2.1E-19 164.5 24.3 225 726-988 22-254 (328)
84 PF05496 RuvB_N: Holliday junc 99.7 8.7E-16 1.9E-20 162.9 14.8 189 726-944 21-224 (233)
85 PRK10865 protein disaggregatio 99.6 1.2E-13 2.7E-18 172.9 33.6 207 728-954 567-833 (857)
86 COG2256 MGS1 ATPase related to 99.6 5.5E-15 1.2E-19 166.1 18.6 167 726-932 21-204 (436)
87 TIGR00763 lon ATP-dependent pr 99.6 2.9E-15 6.3E-20 186.1 18.3 231 730-981 321-583 (775)
88 PRK00149 dnaA chromosomal repl 99.6 1.2E-14 2.7E-19 170.3 22.1 213 765-1007 149-372 (450)
89 TIGR00362 DnaA chromosomal rep 99.6 2E-14 4.4E-19 166.3 22.0 214 764-1007 136-360 (405)
90 PRK11034 clpA ATP-dependent Cl 99.6 1.2E-14 2.6E-19 178.9 18.8 197 727-947 184-407 (758)
91 PRK12323 DNA polymerase III su 99.6 1.3E-13 2.9E-18 164.6 20.9 188 726-946 13-230 (700)
92 PRK14956 DNA polymerase III su 99.5 1.4E-13 3E-18 160.8 19.5 184 726-946 15-227 (484)
93 PRK07003 DNA polymerase III su 99.5 1.4E-13 3E-18 166.1 19.7 185 726-947 13-226 (830)
94 PRK12422 chromosomal replicati 99.5 1.8E-13 3.8E-18 160.3 19.7 226 764-1017 141-382 (445)
95 COG0542 clpA ATP-binding subun 99.5 1.1E-12 2.4E-17 159.4 26.6 407 472-954 250-759 (786)
96 PRK14962 DNA polymerase III su 99.5 2E-13 4.4E-18 160.7 19.7 182 726-944 11-221 (472)
97 PRK14088 dnaA chromosomal repl 99.5 4.3E-13 9.3E-18 157.0 21.7 214 765-1007 131-357 (440)
98 PRK14086 dnaA chromosomal repl 99.5 5.6E-13 1.2E-17 159.4 22.3 213 765-1007 315-539 (617)
99 TIGR03345 VI_ClpV1 type VI sec 99.5 3.5E-13 7.5E-18 168.6 21.3 184 726-934 184-390 (852)
100 COG2255 RuvB Holliday junction 99.5 2.3E-13 5.1E-18 147.3 16.5 196 726-944 23-226 (332)
101 PRK13342 recombination factor 99.5 7.3E-13 1.6E-17 153.9 22.0 180 726-946 9-201 (413)
102 PRK14961 DNA polymerase III su 99.5 6.8E-13 1.5E-17 151.8 20.5 184 726-946 13-225 (363)
103 TIGR00390 hslU ATP-dependent p 99.5 3.5E-13 7.5E-18 154.6 17.7 178 731-908 14-342 (441)
104 PRK14960 DNA polymerase III su 99.5 7.5E-13 1.6E-17 158.5 21.0 184 726-946 12-224 (702)
105 PRK10865 protein disaggregatio 99.5 2.1E-13 4.6E-18 170.9 17.1 164 727-915 176-357 (857)
106 TIGR02928 orc1/cdc6 family rep 99.5 2.9E-12 6.3E-17 145.5 23.9 221 729-985 15-275 (365)
107 PRK14087 dnaA chromosomal repl 99.5 1.5E-12 3.2E-17 152.9 22.1 224 765-1017 142-386 (450)
108 PRK05342 clpX ATP-dependent pr 99.5 3.7E-13 8E-18 156.0 16.8 234 720-953 61-382 (412)
109 PRK14958 DNA polymerase III su 99.5 6.3E-13 1.4E-17 158.0 19.2 184 726-946 13-225 (509)
110 TIGR02902 spore_lonB ATP-depen 99.5 4.8E-13 1E-17 159.9 18.3 213 726-982 62-330 (531)
111 PRK04195 replication factor C 99.5 5.2E-13 1.1E-17 158.1 18.0 185 726-945 11-203 (482)
112 PRK07994 DNA polymerase III su 99.5 1.1E-12 2.5E-17 158.4 20.0 184 726-946 13-225 (647)
113 PRK14949 DNA polymerase III su 99.5 1.2E-12 2.6E-17 160.7 20.4 184 726-946 13-225 (944)
114 PRK06645 DNA polymerase III su 99.5 1.6E-12 3.6E-17 153.9 20.2 186 726-948 18-236 (507)
115 PRK07940 DNA polymerase III su 99.5 1.6E-12 3.4E-17 150.1 19.4 186 727-942 3-215 (394)
116 PRK00411 cdc6 cell division co 99.5 4.8E-12 1E-16 145.3 23.3 224 728-987 29-285 (394)
117 TIGR03346 chaperone_ClpB ATP-d 99.5 6.7E-13 1.5E-17 166.7 17.6 183 727-934 171-376 (852)
118 PRK05201 hslU ATP-dependent pr 99.5 7.4E-13 1.6E-17 152.0 16.2 178 731-908 17-344 (443)
119 CHL00095 clpC Clp protease ATP 99.5 4.4E-13 9.6E-18 167.8 15.6 185 726-935 176-382 (821)
120 PRK08691 DNA polymerase III su 99.5 1.8E-12 3.9E-17 156.4 20.1 185 726-947 13-226 (709)
121 PRK14964 DNA polymerase III su 99.5 2E-12 4.3E-17 152.4 19.6 185 726-947 10-223 (491)
122 TIGR03420 DnaA_homol_Hda DnaA 99.4 3.8E-12 8.2E-17 134.8 19.2 185 726-947 12-207 (226)
123 PRK06893 DNA replication initi 99.4 2.4E-12 5.2E-17 138.3 17.0 180 765-982 40-228 (229)
124 PRK08084 DNA replication initi 99.4 7E-12 1.5E-16 135.3 20.3 205 725-982 18-234 (235)
125 PRK14969 DNA polymerase III su 99.4 2.8E-12 6.1E-17 153.2 19.0 185 726-947 13-226 (527)
126 PRK12402 replication factor C 99.4 3.7E-12 8E-17 142.6 18.8 183 726-940 12-225 (337)
127 PRK14963 DNA polymerase III su 99.4 4.8E-12 1E-16 150.3 20.6 184 726-946 11-222 (504)
128 PRK14959 DNA polymerase III su 99.4 6E-12 1.3E-16 151.2 21.1 186 726-945 13-224 (624)
129 PRK14957 DNA polymerase III su 99.4 6.1E-12 1.3E-16 150.0 20.8 184 726-946 13-225 (546)
130 PRK05563 DNA polymerase III su 99.4 5.9E-12 1.3E-16 151.4 20.8 184 726-946 13-225 (559)
131 PRK08903 DnaA regulatory inact 99.4 8.8E-12 1.9E-16 132.9 19.8 199 726-982 15-224 (227)
132 PRK14951 DNA polymerase III su 99.4 4.5E-12 9.7E-17 153.0 19.5 185 726-947 13-231 (618)
133 PLN03025 replication factor C 99.4 7.2E-12 1.6E-16 140.8 19.8 183 726-943 10-202 (319)
134 TIGR02397 dnaX_nterm DNA polym 99.4 5.6E-12 1.2E-16 142.5 18.5 185 726-947 11-224 (355)
135 KOG2028 ATPase related to the 99.4 6.3E-12 1.4E-16 139.3 18.1 208 726-985 135-369 (554)
136 PRK14952 DNA polymerase III su 99.4 1E-11 2.2E-16 149.4 20.5 189 726-947 10-225 (584)
137 PTZ00112 origin recognition co 99.4 1.3E-11 2.8E-16 149.8 20.6 217 729-986 755-1008(1164)
138 PHA02544 44 clamp loader, smal 99.4 8.5E-12 1.8E-16 139.2 17.8 155 726-912 18-173 (316)
139 PRK08727 hypothetical protein; 99.4 1.9E-11 4.2E-16 131.7 19.6 180 765-983 42-230 (233)
140 PRK07764 DNA polymerase III su 99.4 9.6E-12 2.1E-16 154.6 19.7 187 726-945 12-225 (824)
141 PRK10787 DNA-binding ATP-depen 99.4 8E-12 1.7E-16 155.1 18.6 226 730-982 323-580 (784)
142 KOG2004 Mitochondrial ATP-depe 99.4 3.6E-12 7.8E-17 150.6 14.4 166 730-913 412-597 (906)
143 PF00308 Bac_DnaA: Bacterial d 99.4 1.7E-11 3.6E-16 131.2 18.1 197 724-946 3-213 (219)
144 PF05673 DUF815: Protein of un 99.4 1.5E-11 3.2E-16 132.5 17.6 189 725-943 23-243 (249)
145 PRK05642 DNA replication initi 99.4 2.4E-11 5.1E-16 131.2 19.3 179 765-982 46-233 (234)
146 PRK14965 DNA polymerase III su 99.4 1.6E-11 3.4E-16 148.4 19.7 184 726-946 13-225 (576)
147 PRK13341 recombination factor 99.4 1.4E-11 3.1E-16 151.4 19.5 180 726-946 25-222 (725)
148 PRK07133 DNA polymerase III su 99.4 2.1E-11 4.5E-16 148.5 20.3 184 726-946 15-224 (725)
149 PRK05896 DNA polymerase III su 99.4 2.1E-11 4.5E-16 146.0 19.8 183 726-945 13-224 (605)
150 TIGR00382 clpX endopeptidase C 99.4 1.4E-11 3.1E-16 142.5 17.8 223 731-953 79-388 (413)
151 PRK06647 DNA polymerase III su 99.3 2.6E-11 5.7E-16 145.7 19.7 184 726-946 13-225 (563)
152 PRK14953 DNA polymerase III su 99.3 2.7E-11 5.9E-16 143.4 19.6 184 726-946 13-225 (486)
153 PRK14970 DNA polymerase III su 99.3 3.6E-11 7.9E-16 137.4 20.0 184 726-946 14-214 (367)
154 COG0466 Lon ATP-dependent Lon 99.3 1.7E-11 3.6E-16 146.0 17.2 166 730-913 324-509 (782)
155 PRK06620 hypothetical protein; 99.3 3.9E-11 8.4E-16 128.0 18.4 164 765-981 45-213 (214)
156 PRK06305 DNA polymerase III su 99.3 5.7E-11 1.2E-15 139.7 20.6 187 726-945 14-226 (451)
157 COG0593 DnaA ATPase involved i 99.3 5.6E-11 1.2E-15 136.6 19.7 213 763-1007 112-335 (408)
158 PRK08451 DNA polymerase III su 99.3 5.9E-11 1.3E-15 141.2 20.3 186 726-948 11-225 (535)
159 PRK09111 DNA polymerase III su 99.3 6.3E-11 1.4E-15 143.2 20.8 184 726-946 21-238 (598)
160 KOG0989 Replication factor C, 99.3 4.9E-11 1.1E-15 130.7 16.4 173 726-932 33-222 (346)
161 PRK00440 rfc replication facto 99.3 1.1E-10 2.3E-15 129.7 19.4 182 726-945 14-207 (319)
162 PRK14955 DNA polymerase III su 99.3 1.1E-10 2.3E-15 135.3 19.0 184 726-946 13-233 (397)
163 PRK14954 DNA polymerase III su 99.3 2.2E-10 4.7E-15 138.9 21.3 184 726-946 13-233 (620)
164 PRK14948 DNA polymerase III su 99.3 1.4E-10 3.1E-15 140.8 19.5 182 726-944 13-225 (620)
165 TIGR02640 gas_vesic_GvpN gas v 99.2 1.5E-10 3.3E-15 126.9 17.4 134 765-912 22-198 (262)
166 TIGR02903 spore_lon_C ATP-depe 99.2 3.2E-10 6.9E-15 138.0 21.3 224 726-985 151-431 (615)
167 PRK14950 DNA polymerase III su 99.2 2.8E-10 6E-15 138.0 20.7 183 726-945 13-225 (585)
168 cd00009 AAA The AAA+ (ATPases 99.2 2.3E-10 4.9E-15 109.7 15.2 122 764-897 19-150 (151)
169 COG2812 DnaX DNA polymerase II 99.2 1.5E-10 3.2E-15 136.6 14.0 192 726-948 13-227 (515)
170 PRK14971 DNA polymerase III su 99.2 1E-09 2.2E-14 133.4 19.8 183 726-945 14-226 (614)
171 PRK09087 hypothetical protein; 99.2 5.4E-10 1.2E-14 120.3 15.3 172 765-984 45-222 (226)
172 COG1219 ClpX ATP-dependent pro 99.1 1.2E-09 2.6E-14 120.2 14.2 178 671-862 16-203 (408)
173 PRK09112 DNA polymerase III su 99.1 5E-09 1.1E-13 119.7 20.0 189 726-946 20-245 (351)
174 TIGR01650 PD_CobS cobaltochela 99.1 8.2E-10 1.8E-14 124.1 13.2 140 764-913 64-234 (327)
175 COG1474 CDC6 Cdc6-related prot 99.1 6.1E-09 1.3E-13 119.5 20.2 220 731-988 19-269 (366)
176 PRK13407 bchI magnesium chelat 99.1 1.4E-09 3E-14 123.3 14.8 161 726-912 5-216 (334)
177 PHA02244 ATPase-like protein 99.1 1.7E-09 3.7E-14 123.0 14.6 125 765-901 120-263 (383)
178 PRK05564 DNA polymerase III su 99.0 9.1E-09 2E-13 115.5 19.7 170 727-933 2-183 (313)
179 PRK07471 DNA polymerase III su 99.0 6.2E-09 1.3E-13 119.5 18.3 183 726-942 16-239 (365)
180 CHL00081 chlI Mg-protoporyphyr 99.0 8.9E-09 1.9E-13 117.3 19.3 160 725-912 13-232 (350)
181 smart00382 AAA ATPases associa 99.0 1.9E-09 4.2E-14 101.9 11.2 126 765-899 3-147 (148)
182 TIGR00678 holB DNA polymerase 99.0 5.9E-09 1.3E-13 108.3 15.8 143 763-932 13-183 (188)
183 COG2607 Predicted ATPase (AAA+ 99.0 9.2E-09 2E-13 109.9 16.8 189 725-943 56-275 (287)
184 KOG1969 DNA replication checkp 99.0 4.1E-09 8.8E-14 125.7 14.2 168 764-950 326-516 (877)
185 PRK07399 DNA polymerase III su 98.9 2E-08 4.4E-13 113.2 17.5 183 727-943 2-223 (314)
186 COG0542 clpA ATP-binding subun 98.9 7.5E-09 1.6E-13 126.6 14.9 164 726-914 167-348 (786)
187 PF00004 AAA: ATPase family as 98.9 3E-09 6.5E-14 102.2 9.2 81 472-590 45-132 (132)
188 PF07728 AAA_5: AAA domain (dy 98.9 3.8E-09 8.3E-14 104.0 10.0 112 766-890 1-139 (139)
189 TIGR02030 BchI-ChlI magnesium 98.9 2.7E-08 5.8E-13 113.1 17.5 157 727-912 2-219 (337)
190 TIGR03015 pepcterm_ATPase puta 98.9 7.9E-08 1.7E-12 104.6 20.6 191 765-985 44-267 (269)
191 TIGR02442 Cob-chelat-sub cobal 98.9 1.7E-08 3.7E-13 123.6 16.7 159 728-912 3-214 (633)
192 COG1220 HslU ATP-dependent pro 98.9 2.9E-08 6.3E-13 110.1 16.3 178 731-909 17-346 (444)
193 PRK05707 DNA polymerase III su 98.9 4E-08 8.8E-13 111.4 17.8 148 763-933 21-196 (328)
194 PRK11331 5-methylcytosine-spec 98.9 1.4E-08 3E-13 118.4 13.9 143 728-898 174-357 (459)
195 COG1224 TIP49 DNA helicase TIP 98.9 1.6E-07 3.4E-12 105.1 20.7 93 878-986 341-434 (450)
196 COG0470 HolB ATPase involved i 98.9 2.5E-08 5.4E-13 110.9 14.2 149 730-909 2-178 (325)
197 COG0714 MoxR-like ATPases [Gen 98.8 6.9E-09 1.5E-13 117.4 9.4 135 765-911 44-202 (329)
198 PF07724 AAA_2: AAA domain (Cd 98.8 1.4E-08 3E-13 105.0 10.4 115 763-880 2-131 (171)
199 PRK04132 replication factor C 98.8 4.8E-08 1E-12 121.6 16.3 160 763-946 563-736 (846)
200 KOG0745 Putative ATP-dependent 98.8 7.9E-08 1.7E-12 109.5 16.3 97 765-861 227-331 (564)
201 PRK08058 DNA polymerase III su 98.8 1.4E-07 3E-12 107.0 18.1 149 727-910 3-180 (329)
202 TIGR02974 phageshock_pspF psp 98.8 7.3E-08 1.6E-12 109.4 15.3 169 765-949 23-233 (329)
203 PF01078 Mg_chelatase: Magnesi 98.8 5.2E-09 1.1E-13 110.7 4.8 45 728-788 2-46 (206)
204 TIGR00764 lon_rel lon-related 98.8 1.4E-07 3.1E-12 114.9 17.8 51 725-791 14-64 (608)
205 KOG0991 Replication factor C, 98.8 7.5E-08 1.6E-12 102.4 13.2 173 726-932 24-206 (333)
206 PRK11608 pspF phage shock prot 98.8 1.1E-07 2.3E-12 107.8 15.5 194 727-948 4-239 (326)
207 KOG1514 Origin recognition com 98.8 2.4E-07 5.2E-12 110.8 18.3 229 731-989 398-660 (767)
208 TIGR01817 nifA Nif-specific re 98.7 8.4E-08 1.8E-12 115.4 14.1 193 726-949 193-428 (534)
209 PF06068 TIP49: TIP49 C-termin 98.7 8.9E-08 1.9E-12 108.5 12.9 69 725-802 20-90 (398)
210 TIGR02329 propionate_PrpR prop 98.7 5.5E-08 1.2E-12 116.5 11.7 195 726-948 209-449 (526)
211 PRK15429 formate hydrogenlyase 98.7 1.4E-07 2.9E-12 116.9 15.4 196 726-949 373-609 (686)
212 smart00350 MCM minichromosome 98.7 2.6E-07 5.7E-12 110.6 17.4 167 730-913 204-401 (509)
213 KOG2227 Pre-initiation complex 98.7 9.1E-07 2E-11 102.1 20.1 230 730-987 151-418 (529)
214 PRK15424 propionate catabolism 98.7 1.3E-07 2.8E-12 113.4 13.8 193 726-948 216-464 (538)
215 PRK12377 putative replication 98.7 9.7E-08 2.1E-12 104.3 11.4 107 715-835 60-175 (248)
216 COG1221 PspF Transcriptional r 98.7 7.6E-08 1.6E-12 110.9 10.9 196 726-950 75-310 (403)
217 COG3829 RocR Transcriptional r 98.7 6.3E-08 1.4E-12 113.6 10.3 199 724-947 240-477 (560)
218 TIGR02031 BchD-ChlD magnesium 98.7 2E-07 4.4E-12 113.3 15.1 136 765-912 17-174 (589)
219 PRK05022 anaerobic nitric oxid 98.7 4.2E-07 9E-12 108.9 17.3 195 728-950 186-421 (509)
220 PRK08116 hypothetical protein; 98.7 6.5E-08 1.4E-12 106.8 9.6 129 764-909 114-257 (268)
221 PRK06871 DNA polymerase III su 98.7 1.3E-06 2.8E-11 99.1 20.0 144 734-911 7-178 (325)
222 PRK13531 regulatory ATPase Rav 98.6 1.8E-07 3.8E-12 110.1 12.9 152 731-911 22-193 (498)
223 TIGR00602 rad24 checkpoint pro 98.6 5.8E-07 1.2E-11 109.6 17.2 194 726-947 81-326 (637)
224 PRK11388 DNA-binding transcrip 98.6 4.7E-07 1E-11 111.2 16.6 195 726-948 322-553 (638)
225 PRK10820 DNA-binding transcrip 98.6 2.5E-07 5.5E-12 111.0 13.9 196 725-948 200-436 (520)
226 COG2204 AtoC Response regulato 98.6 4.3E-07 9.4E-12 106.4 14.6 197 727-951 139-376 (464)
227 PRK07993 DNA polymerase III su 98.6 1.3E-06 2.8E-11 99.5 18.0 152 762-934 22-198 (334)
228 PF05621 TniB: Bacterial TniB 98.6 2E-06 4.3E-11 95.9 18.3 176 765-952 62-272 (302)
229 KOG0744 AAA+-type ATPase [Post 98.6 4.8E-07 1E-11 100.3 12.6 74 171-250 131-204 (423)
230 PF07726 AAA_3: ATPase family 98.6 2.6E-08 5.6E-13 98.1 2.5 108 766-890 1-129 (131)
231 PRK07952 DNA replication prote 98.6 3.4E-07 7.4E-12 99.8 11.4 107 715-835 58-174 (244)
232 KOG0742 AAA+-type ATPase [Post 98.6 4.2E-07 9.1E-12 102.9 12.0 97 472-607 430-531 (630)
233 PF00158 Sigma54_activat: Sigm 98.5 6.4E-07 1.4E-11 92.5 12.3 100 765-879 23-144 (168)
234 COG3604 FhlA Transcriptional r 98.5 4.1E-07 8.8E-12 105.8 12.0 204 724-949 218-456 (550)
235 PRK06964 DNA polymerase III su 98.5 5.7E-07 1.2E-11 102.5 13.0 133 762-911 19-203 (342)
236 PRK08769 DNA polymerase III su 98.5 2.3E-06 5E-11 96.8 17.7 169 734-937 9-205 (319)
237 TIGR00368 Mg chelatase-related 98.5 5.3E-07 1.1E-11 107.5 12.9 146 726-902 189-394 (499)
238 PF13177 DNA_pol3_delta2: DNA 98.5 7.3E-07 1.6E-11 91.3 12.2 133 733-898 1-160 (162)
239 smart00763 AAA_PrkA PrkA AAA d 98.5 1.8E-06 3.9E-11 98.5 15.7 63 727-797 48-118 (361)
240 PRK08181 transposase; Validate 98.5 2.5E-07 5.4E-12 102.3 7.9 71 764-836 106-180 (269)
241 PRK06090 DNA polymerase III su 98.4 3.5E-06 7.6E-11 95.3 16.1 144 734-910 8-178 (319)
242 TIGR02915 PEP_resp_reg putativ 98.4 1.3E-06 2.9E-11 102.3 12.7 166 765-949 163-372 (445)
243 TIGR00763 lon ATP-dependent pr 98.4 4.7E-06 1E-10 104.7 16.7 98 477-605 408-506 (775)
244 TIGR02880 cbbX_cfxQ probable R 98.4 2.5E-06 5.4E-11 95.1 12.6 99 473-607 113-211 (284)
245 TIGR02881 spore_V_K stage V sp 98.4 4.8E-06 1E-10 91.3 14.2 111 474-622 98-208 (261)
246 PRK06835 DNA replication prote 98.3 1E-06 2.3E-11 100.0 8.7 69 765-835 184-258 (329)
247 PRK06526 transposase; Provisio 98.3 6.5E-07 1.4E-11 98.2 6.5 74 761-836 95-172 (254)
248 COG1239 ChlI Mg-chelatase subu 98.3 5E-06 1.1E-10 95.7 13.5 163 726-914 14-234 (423)
249 PRK08699 DNA polymerase III su 98.3 4.2E-06 9.2E-11 95.0 12.6 132 762-910 19-183 (325)
250 PRK10923 glnG nitrogen regulat 98.3 5.8E-06 1.3E-10 97.6 14.0 190 728-948 137-370 (469)
251 PF01637 Arch_ATPase: Archaeal 98.3 3.6E-06 7.9E-11 88.2 10.8 161 764-934 20-228 (234)
252 KOG2035 Replication factor C, 98.3 2.1E-05 4.5E-10 86.1 16.7 170 727-932 11-220 (351)
253 COG1484 DnaC DNA replication p 98.3 2E-06 4.3E-11 94.4 9.0 71 763-835 104-179 (254)
254 PRK09862 putative ATP-dependen 98.3 8.6E-06 1.9E-10 97.2 14.8 145 727-902 189-391 (506)
255 PRK11361 acetoacetate metaboli 98.3 1E-05 2.2E-10 94.9 14.9 165 765-948 167-375 (457)
256 PRK08939 primosomal protein Dn 98.3 3.2E-06 7E-11 95.2 10.2 70 764-835 156-229 (306)
257 COG0606 Predicted ATPase with 98.2 4.6E-07 1E-11 105.3 2.8 48 725-788 175-222 (490)
258 PF14532 Sigma54_activ_2: Sigm 98.2 1.3E-06 2.9E-11 86.6 5.5 105 765-899 22-136 (138)
259 PF01695 IstB_IS21: IstB-like 98.2 9.4E-07 2E-11 92.0 4.5 71 762-834 45-119 (178)
260 PRK09183 transposase/IS protei 98.2 2.8E-06 6.2E-11 93.4 8.5 73 762-835 100-176 (259)
261 PF13173 AAA_14: AAA domain 98.2 3.2E-06 7E-11 82.8 7.8 69 765-835 3-73 (128)
262 KOG0990 Replication factor C, 98.2 1.5E-05 3.2E-10 88.8 13.7 161 724-918 36-209 (360)
263 KOG1942 DNA helicase, TBP-inte 98.2 3.4E-05 7.3E-10 84.8 16.1 53 878-931 347-400 (456)
264 PF03215 Rad17: Rad17 cell cyc 98.2 2.1E-05 4.5E-10 94.4 15.9 199 726-950 16-269 (519)
265 PRK06921 hypothetical protein; 98.2 3.4E-06 7.3E-11 93.2 8.2 68 764-834 117-188 (266)
266 PTZ00111 DNA replication licen 98.2 7.1E-06 1.5E-10 102.5 10.9 168 730-912 451-657 (915)
267 PF13401 AAA_22: AAA domain; P 98.1 1.3E-05 2.7E-10 77.5 10.1 72 765-836 5-100 (131)
268 TIGR01818 ntrC nitrogen regula 98.1 2E-05 4.3E-10 92.8 13.1 166 765-949 158-367 (463)
269 PRK05342 clpX ATP-dependent pr 98.1 5.8E-05 1.3E-09 88.4 16.4 80 162-259 64-144 (412)
270 PRK13765 ATP-dependent proteas 98.1 4E-05 8.7E-10 93.9 15.5 48 726-789 28-75 (637)
271 KOG1051 Chaperone HSP104 and r 98.1 1.9E-05 4.1E-10 98.6 12.8 127 730-878 563-710 (898)
272 PRK05201 hslU ATP-dependent pr 98.1 0.00013 2.8E-09 85.0 18.4 67 190-260 21-87 (443)
273 cd01120 RecA-like_NTPases RecA 98.1 2.8E-05 6.2E-10 76.7 11.3 72 767-838 2-100 (165)
274 KOG2680 DNA helicase TIP49, TB 98.1 9.5E-05 2E-09 81.7 15.5 94 878-987 338-432 (454)
275 PRK15115 response regulator Gl 98.0 6.6E-05 1.4E-09 88.1 15.5 165 765-948 158-366 (444)
276 PF05729 NACHT: NACHT domain 98.0 2.3E-05 5E-10 78.0 9.6 140 766-914 2-165 (166)
277 PRK00080 ruvB Holliday junctio 98.0 0.00014 2.9E-09 82.6 15.8 60 562-622 151-210 (328)
278 TIGR00635 ruvB Holliday juncti 97.9 0.00019 4.2E-09 80.0 15.4 60 562-622 130-189 (305)
279 PRK13406 bchD magnesium chelat 97.9 6.8E-05 1.5E-09 91.3 11.9 124 765-903 26-173 (584)
280 PF03969 AFG1_ATPase: AFG1-lik 97.9 6.9E-05 1.5E-09 86.4 11.0 103 761-879 59-168 (362)
281 PF12774 AAA_6: Hydrolytic ATP 97.8 0.00011 2.4E-09 79.8 11.7 128 765-908 33-176 (231)
282 PRK05917 DNA polymerase III su 97.8 0.00028 6.1E-09 79.0 15.1 118 762-899 17-154 (290)
283 TIGR00382 clpX endopeptidase C 97.8 0.00034 7.4E-09 81.9 16.3 82 161-259 69-152 (413)
284 PF00931 NB-ARC: NB-ARC domain 97.8 0.00018 3.9E-09 78.9 13.1 157 763-941 18-202 (287)
285 PF12775 AAA_7: P-loop contain 97.8 1.2E-05 2.6E-10 89.2 3.6 140 764-914 33-195 (272)
286 TIGR02237 recomb_radB DNA repa 97.8 0.00016 3.5E-09 76.2 11.5 77 761-837 9-111 (209)
287 PRK10365 transcriptional regul 97.8 0.00034 7.4E-09 81.8 15.1 166 764-948 162-371 (441)
288 KOG1970 Checkpoint RAD17-RFC c 97.7 0.00072 1.6E-08 80.0 16.7 172 765-949 111-320 (634)
289 CHL00181 cbbX CbbX; Provisiona 97.7 0.00017 3.7E-09 80.7 10.7 98 474-607 115-212 (287)
290 PRK07276 DNA polymerase III su 97.7 0.0017 3.7E-08 72.9 18.2 155 762-943 22-199 (290)
291 TIGR01618 phage_P_loop phage n 97.7 9.2E-05 2E-09 79.8 7.5 22 764-785 12-33 (220)
292 cd01124 KaiC KaiC is a circadi 97.7 0.00042 9E-09 71.2 12.0 71 767-837 2-109 (187)
293 PRK05818 DNA polymerase III su 97.6 0.00091 2E-08 73.8 14.9 121 761-899 4-147 (261)
294 PLN03210 Resistant to P. syrin 97.6 0.00071 1.5E-08 88.9 16.7 172 727-934 182-389 (1153)
295 KOG0478 DNA replication licens 97.6 0.00069 1.5E-08 81.7 14.3 171 730-912 430-626 (804)
296 COG3267 ExeA Type II secretory 97.6 0.0021 4.6E-08 70.3 16.4 174 766-951 53-255 (269)
297 PF14516 AAA_35: AAA-like doma 97.5 0.0016 3.4E-08 74.4 15.6 159 763-934 30-233 (331)
298 COG1241 MCM2 Predicted ATPase 97.5 0.00037 8E-09 85.6 10.6 170 730-913 287-484 (682)
299 PRK07132 DNA polymerase III su 97.5 0.0013 2.8E-08 74.2 14.0 123 764-910 18-160 (299)
300 KOG2383 Predicted ATPase [Gene 97.5 0.00085 1.8E-08 77.0 12.5 204 761-996 111-366 (467)
301 COG3283 TyrR Transcriptional r 97.5 0.0007 1.5E-08 76.6 11.5 194 725-946 200-429 (511)
302 KOG2228 Origin recognition com 97.5 0.00041 9E-09 78.0 9.5 159 731-912 26-219 (408)
303 KOG1968 Replication factor C, 97.4 0.00015 3.3E-09 91.2 6.3 162 766-946 359-533 (871)
304 PRK11823 DNA repair protein Ra 97.4 0.0011 2.3E-08 78.8 12.9 78 761-838 77-171 (446)
305 PRK00771 signal recognition pa 97.4 0.0063 1.4E-07 72.1 19.0 199 763-985 94-333 (437)
306 COG1618 Predicted nucleotide k 97.4 0.002 4.4E-08 66.2 12.7 25 764-788 5-29 (179)
307 PF00493 MCM: MCM2/3/5 family 97.4 4.9E-05 1.1E-09 86.6 1.0 163 730-915 25-224 (331)
308 cd01121 Sms Sms (bacterial rad 97.4 0.0014 3.1E-08 75.9 13.0 78 761-838 79-173 (372)
309 PRK09361 radB DNA repair and r 97.4 0.0013 2.8E-08 70.3 11.7 77 761-838 20-122 (225)
310 PF00910 RNA_helicase: RNA hel 97.4 0.0002 4.4E-09 68.3 4.5 23 767-789 1-23 (107)
311 PF13207 AAA_17: AAA domain; P 97.3 0.00019 4.2E-09 68.6 4.1 31 767-797 2-32 (121)
312 PHA02624 large T antigen; Prov 97.3 0.00032 7E-09 84.6 6.5 38 762-799 429-466 (647)
313 TIGR02012 tigrfam_recA protein 97.3 0.0015 3.2E-08 74.4 11.1 78 761-838 52-148 (321)
314 PHA00729 NTP-binding motif con 97.3 0.00037 8E-09 75.4 5.9 27 765-791 18-44 (226)
315 KOG2170 ATPase of the AAA+ sup 97.3 0.0059 1.3E-07 68.2 15.2 95 731-835 84-190 (344)
316 cd01394 radB RadB. The archaea 97.2 0.0027 5.8E-08 67.5 11.7 75 761-836 16-116 (218)
317 PF05707 Zot: Zonular occluden 97.2 0.00069 1.5E-08 71.3 6.5 122 767-898 3-145 (193)
318 PF05496 RuvB_N: Holliday junc 97.2 0.00098 2.1E-08 72.0 7.5 88 485-602 102-190 (233)
319 COG5271 MDN1 AAA ATPase contai 97.2 0.0031 6.8E-08 81.3 12.7 136 764-913 1543-1704(4600)
320 TIGR03877 thermo_KaiC_1 KaiC d 97.1 0.0043 9.3E-08 67.3 12.6 39 758-797 16-57 (237)
321 PRK08533 flagellar accessory p 97.1 0.0031 6.7E-08 68.4 11.2 76 761-836 21-130 (230)
322 PRK08118 topology modulation p 97.1 0.00085 1.8E-08 69.2 6.5 32 766-797 3-34 (167)
323 cd00983 recA RecA is a bacter 97.1 0.0023 5.1E-08 72.8 10.5 78 761-838 52-148 (325)
324 PRK00131 aroK shikimate kinase 97.1 0.00054 1.2E-08 69.3 4.7 33 763-795 3-35 (175)
325 PRK04841 transcriptional regul 97.1 0.0086 1.9E-07 76.3 16.3 153 764-934 32-219 (903)
326 PRK06067 flagellar accessory p 97.1 0.0039 8.5E-08 67.2 11.3 76 761-836 22-133 (234)
327 PF13191 AAA_16: AAA ATPase do 97.0 0.0019 4.1E-08 65.8 8.0 59 731-800 2-63 (185)
328 PHA02774 E1; Provisional 97.0 0.0049 1.1E-07 74.5 11.9 33 764-796 434-467 (613)
329 PRK07261 topology modulation p 97.0 0.0016 3.4E-08 67.4 6.9 34 766-799 2-35 (171)
330 PRK05800 cobU adenosylcobinami 97.0 0.0071 1.5E-07 62.8 11.6 92 766-861 3-114 (170)
331 PF13671 AAA_33: AAA domain; P 96.9 0.0018 3.9E-08 63.6 6.8 32 767-800 2-33 (143)
332 cd01129 PulE-GspE PulE/GspE Th 96.9 0.0021 4.6E-08 71.2 8.0 94 726-834 57-160 (264)
333 PRK12724 flagellar biosynthesi 96.9 0.025 5.4E-07 66.5 17.1 36 764-799 223-262 (432)
334 COG3284 AcoR Transcriptional a 96.9 0.0031 6.7E-08 76.1 9.6 169 765-948 337-539 (606)
335 KOG2543 Origin recognition com 96.9 0.011 2.3E-07 68.0 13.1 156 731-911 8-192 (438)
336 PF06745 KaiC: KaiC; InterPro 96.9 0.0084 1.8E-07 64.2 11.9 96 761-860 16-148 (226)
337 PRK10787 DNA-binding ATP-depen 96.9 0.01 2.2E-07 75.0 14.1 42 562-605 466-507 (784)
338 COG1485 Predicted ATPase [Gene 96.9 0.0051 1.1E-07 70.1 10.1 103 761-883 62-176 (367)
339 cd01393 recA_like RecA is a b 96.9 0.0076 1.6E-07 64.2 11.1 39 761-799 16-63 (226)
340 TIGR01425 SRP54_euk signal rec 96.8 0.04 8.6E-07 65.2 17.8 201 763-985 99-340 (429)
341 PF13604 AAA_30: AAA domain; P 96.8 0.0034 7.4E-08 66.4 8.3 34 765-798 19-55 (196)
342 PRK15455 PrkA family serine pr 96.8 0.0013 2.8E-08 79.2 5.6 64 726-797 73-137 (644)
343 PRK10536 hypothetical protein; 96.8 0.0061 1.3E-07 67.3 10.3 22 766-787 76-97 (262)
344 KOG0482 DNA replication licens 96.8 0.003 6.6E-08 74.1 8.2 174 730-912 343-539 (721)
345 COG5271 MDN1 AAA ATPase contai 96.8 0.0043 9.3E-08 80.2 9.9 133 765-912 889-1047(4600)
346 cd01123 Rad51_DMC1_radA Rad51_ 96.8 0.0083 1.8E-07 64.3 11.1 114 761-876 16-167 (235)
347 TIGR03878 thermo_KaiC_2 KaiC d 96.8 0.012 2.7E-07 64.9 12.4 37 761-797 33-72 (259)
348 PRK09354 recA recombinase A; P 96.8 0.008 1.7E-07 69.1 11.1 77 761-837 57-152 (349)
349 TIGR00416 sms DNA repair prote 96.8 0.011 2.4E-07 70.4 12.7 77 761-837 91-184 (454)
350 PRK13947 shikimate kinase; Pro 96.8 0.0013 2.9E-08 66.9 4.2 31 766-796 3-33 (171)
351 PRK03839 putative kinase; Prov 96.7 0.0013 2.8E-08 67.9 4.0 31 766-796 2-32 (180)
352 PF03266 NTPase_1: NTPase; In 96.7 0.00085 1.9E-08 69.5 2.7 23 766-788 1-23 (168)
353 cd00544 CobU Adenosylcobinamid 96.7 0.011 2.4E-07 61.4 10.8 71 767-839 2-89 (169)
354 PRK10867 signal recognition pa 96.7 0.074 1.6E-06 63.1 18.7 73 763-835 99-195 (433)
355 PRK04296 thymidine kinase; Pro 96.7 0.01 2.3E-07 62.4 10.5 69 766-835 4-90 (190)
356 cd00046 DEXDc DEAD-like helica 96.7 0.005 1.1E-07 58.1 7.4 23 766-788 2-24 (144)
357 PRK13342 recombination factor 96.7 0.026 5.6E-07 66.4 14.8 75 484-606 92-166 (413)
358 KOG0743 AAA+-type ATPase [Post 96.7 0.0048 1E-07 72.1 8.5 75 177-256 185-268 (457)
359 cd00464 SK Shikimate kinase (S 96.7 0.0016 3.5E-08 64.8 4.1 31 766-796 1-31 (154)
360 cd01122 GP4d_helicase GP4d_hel 96.7 0.013 2.9E-07 64.2 11.6 37 761-797 27-67 (271)
361 PRK13948 shikimate kinase; Pro 96.7 0.003 6.6E-08 66.3 6.2 36 761-796 7-42 (182)
362 PRK00411 cdc6 cell division co 96.7 0.013 2.8E-07 67.8 11.9 111 472-622 125-239 (394)
363 PRK09376 rho transcription ter 96.7 0.0041 8.8E-08 72.3 7.7 73 765-837 170-270 (416)
364 KOG1051 Chaperone HSP104 and r 96.7 0.0086 1.9E-07 75.6 11.1 139 765-914 209-365 (898)
365 PRK14974 cell division protein 96.7 0.015 3.3E-07 66.7 12.2 35 764-798 140-177 (336)
366 cd01131 PilT Pilus retraction 96.7 0.0029 6.4E-08 66.9 6.1 66 767-832 4-83 (198)
367 PRK14962 DNA polymerase III su 96.6 0.023 4.9E-07 68.1 14.1 90 484-622 117-206 (472)
368 PRK13695 putative NTPase; Prov 96.6 0.008 1.7E-07 61.9 8.9 23 766-788 2-24 (174)
369 PRK00625 shikimate kinase; Pro 96.6 0.0019 4.1E-08 67.2 4.3 31 766-796 2-32 (173)
370 PRK04328 hypothetical protein; 96.6 0.022 4.7E-07 62.5 12.7 37 761-797 20-59 (249)
371 PF06309 Torsin: Torsin; Inte 96.6 0.012 2.7E-07 58.3 9.6 52 730-788 26-77 (127)
372 cd01128 rho_factor Transcripti 96.6 0.0099 2.1E-07 65.5 9.6 27 764-790 16-42 (249)
373 TIGR01359 UMP_CMP_kin_fam UMP- 96.6 0.002 4.3E-08 66.4 3.9 34 767-802 2-35 (183)
374 cd00984 DnaB_C DnaB helicase C 96.5 0.025 5.4E-07 60.9 12.5 37 761-797 10-50 (242)
375 PRK14532 adenylate kinase; Pro 96.5 0.0022 4.8E-08 66.6 4.1 36 766-803 2-37 (188)
376 KOG0480 DNA replication licens 96.5 0.071 1.5E-06 64.6 16.8 174 728-915 344-545 (764)
377 TIGR02928 orc1/cdc6 family rep 96.5 0.014 3.1E-07 66.7 10.9 93 472-605 116-213 (365)
378 KOG3347 Predicted nucleotide k 96.5 0.002 4.4E-08 65.3 3.5 32 765-796 8-39 (176)
379 TIGR03880 KaiC_arch_3 KaiC dom 96.5 0.032 6.8E-07 59.8 12.9 38 761-798 13-53 (224)
380 cd03283 ABC_MutS-like MutS-lik 96.5 0.012 2.7E-07 62.4 9.5 69 765-834 26-116 (199)
381 PRK14722 flhF flagellar biosyn 96.5 0.006 1.3E-07 70.8 7.5 110 763-886 136-266 (374)
382 TIGR03881 KaiC_arch_4 KaiC dom 96.5 0.034 7.4E-07 59.5 12.8 37 761-797 17-56 (229)
383 PRK13949 shikimate kinase; Pro 96.4 0.0026 5.5E-08 65.8 4.0 32 765-796 2-33 (169)
384 PRK06762 hypothetical protein; 96.4 0.0075 1.6E-07 61.3 7.2 37 765-801 3-39 (166)
385 PRK14531 adenylate kinase; Pro 96.4 0.003 6.6E-08 65.7 4.4 30 765-794 3-32 (183)
386 PF07693 KAP_NTPase: KAP famil 96.4 0.17 3.7E-06 56.8 18.8 28 762-789 18-45 (325)
387 PRK12723 flagellar biosynthesi 96.4 0.022 4.7E-07 66.6 11.8 109 764-885 174-305 (388)
388 PF00437 T2SE: Type II/IV secr 96.4 0.0039 8.4E-08 68.6 5.4 98 725-834 100-208 (270)
389 PRK06217 hypothetical protein; 96.4 0.0031 6.8E-08 65.6 4.3 31 766-796 3-33 (183)
390 cd01428 ADK Adenylate kinase ( 96.4 0.0029 6.2E-08 65.5 3.9 33 767-801 2-34 (194)
391 PRK06645 DNA polymerase III su 96.4 0.049 1.1E-06 65.8 14.7 86 473-606 113-202 (507)
392 TIGR02858 spore_III_AA stage I 96.4 0.0055 1.2E-07 68.2 6.3 68 765-832 112-203 (270)
393 cd02020 CMPK Cytidine monophos 96.4 0.0031 6.8E-08 62.0 3.9 30 767-796 2-31 (147)
394 PRK05973 replicative DNA helic 96.3 0.039 8.5E-07 60.4 12.2 38 761-798 61-101 (237)
395 cd02021 GntK Gluconate kinase 96.3 0.0036 7.8E-08 62.4 3.9 28 767-794 2-29 (150)
396 TIGR02533 type_II_gspE general 96.3 0.011 2.4E-07 71.0 8.6 95 725-834 218-322 (486)
397 COG1373 Predicted ATPase (AAA+ 96.3 0.02 4.4E-07 67.1 10.4 121 766-906 39-161 (398)
398 TIGR02688 conserved hypothetic 96.3 0.0052 1.1E-07 72.0 5.4 63 762-836 207-273 (449)
399 PRK14530 adenylate kinase; Pro 96.3 0.0042 9.1E-08 66.2 4.4 30 766-795 5-34 (215)
400 TIGR02525 plasmid_TraJ plasmid 96.2 0.0091 2E-07 69.4 7.4 69 766-834 151-236 (372)
401 PF00448 SRP54: SRP54-type pro 96.2 0.011 2.4E-07 62.7 7.4 108 764-883 1-131 (196)
402 cd00227 CPT Chloramphenicol (C 96.2 0.0039 8.4E-08 64.3 3.8 35 765-799 3-37 (175)
403 PRK04195 replication factor C 96.2 0.059 1.3E-06 64.7 14.2 62 180-257 12-73 (482)
404 PRK13764 ATPase; Provisional 96.2 0.0089 1.9E-07 73.2 7.3 70 764-834 257-335 (602)
405 smart00487 DEXDc DEAD-like hel 96.2 0.045 9.8E-07 55.0 11.2 33 765-797 25-62 (201)
406 COG4650 RtcR Sigma54-dependent 96.2 0.0077 1.7E-07 66.7 5.8 73 765-837 209-296 (531)
407 PRK10436 hypothetical protein; 96.2 0.013 2.8E-07 70.0 8.2 102 718-834 187-298 (462)
408 KOG0477 DNA replication licens 96.1 0.0061 1.3E-07 73.1 5.3 158 730-905 450-641 (854)
409 COG0703 AroK Shikimate kinase 96.1 0.0043 9.3E-08 64.6 3.5 32 765-796 3-34 (172)
410 PTZ00088 adenylate kinase 1; P 96.1 0.0056 1.2E-07 66.5 4.6 31 765-795 7-37 (229)
411 cd03281 ABC_MSH5_euk MutS5 hom 96.1 0.037 8E-07 59.4 10.8 22 765-786 30-51 (213)
412 TIGR01313 therm_gnt_kin carboh 96.1 0.0042 9.2E-08 62.9 3.4 28 767-794 1-28 (163)
413 COG0563 Adk Adenylate kinase a 96.1 0.0054 1.2E-07 64.2 4.3 33 766-800 2-34 (178)
414 PF10443 RNA12: RNA12 protein; 96.1 0.12 2.5E-06 60.9 15.4 104 882-985 199-333 (431)
415 PRK08233 hypothetical protein; 96.1 0.037 8.1E-07 56.5 10.4 33 765-797 4-37 (182)
416 PRK14528 adenylate kinase; Pro 96.1 0.0057 1.2E-07 64.0 4.3 31 765-795 2-32 (186)
417 PRK03731 aroL shikimate kinase 96.1 0.0062 1.3E-07 62.2 4.4 32 765-796 3-34 (171)
418 COG2804 PulE Type II secretory 96.1 0.012 2.7E-07 69.8 7.3 107 713-834 222-338 (500)
419 TIGR01420 pilT_fam pilus retra 96.1 0.0094 2E-07 68.4 6.3 69 765-833 123-205 (343)
420 PRK06547 hypothetical protein; 96.0 0.0064 1.4E-07 63.3 4.4 34 763-796 14-47 (172)
421 COG3854 SpoIIIAA ncharacterize 96.0 0.013 2.9E-07 63.4 6.8 71 765-835 138-230 (308)
422 cd02027 APSK Adenosine 5'-phos 96.0 0.018 4E-07 58.2 7.6 34 767-800 2-38 (149)
423 PRK04301 radA DNA repair and r 96.0 0.042 9.1E-07 62.4 11.3 39 761-799 99-146 (317)
424 TIGR01360 aden_kin_iso1 adenyl 96.0 0.0069 1.5E-07 62.3 4.5 30 765-794 4-33 (188)
425 PF09336 Vps4_C: Vps4 C termin 96.0 0.0051 1.1E-07 53.7 2.9 35 970-1006 28-62 (62)
426 PRK11889 flhF flagellar biosyn 96.0 0.071 1.5E-06 62.4 13.0 35 764-798 241-278 (436)
427 PF04665 Pox_A32: Poxvirus A32 96.0 0.093 2E-06 57.7 13.2 133 761-910 10-168 (241)
428 TIGR02655 circ_KaiC circadian 96.0 0.055 1.2E-06 65.1 12.5 77 761-837 260-367 (484)
429 TIGR00959 ffh signal recogniti 96.0 0.2 4.4E-06 59.4 17.0 73 763-835 98-194 (428)
430 PF13481 AAA_25: AAA domain; P 96.0 0.025 5.5E-07 58.5 8.6 75 764-838 32-156 (193)
431 TIGR02236 recomb_radA DNA repa 96.0 0.051 1.1E-06 61.3 11.6 39 761-799 92-139 (310)
432 PF13479 AAA_24: AAA domain 96.0 0.032 6.9E-07 59.8 9.5 67 765-835 4-80 (213)
433 COG4088 Predicted nucleotide k 96.0 0.03 6.6E-07 59.8 8.9 22 767-788 4-25 (261)
434 TIGR02782 TrbB_P P-type conjug 96.0 0.0088 1.9E-07 67.5 5.3 69 765-833 133-214 (299)
435 PF09848 DUF2075: Uncharacteri 96.0 0.013 2.9E-07 67.3 6.9 23 766-788 3-25 (352)
436 PRK13946 shikimate kinase; Pro 95.9 0.0064 1.4E-07 63.4 3.9 32 765-796 11-42 (184)
437 PLN02200 adenylate kinase fami 95.9 0.008 1.7E-07 65.5 4.7 38 763-802 42-79 (234)
438 smart00534 MUTSac ATPase domai 95.9 0.063 1.4E-06 56.1 11.3 20 767-786 2-21 (185)
439 TIGR01351 adk adenylate kinase 95.9 0.0066 1.4E-07 64.5 3.9 29 767-795 2-30 (210)
440 TIGR02538 type_IV_pilB type IV 95.9 0.017 3.7E-07 70.6 7.9 95 725-834 292-396 (564)
441 PRK02496 adk adenylate kinase; 95.9 0.0074 1.6E-07 62.5 4.1 30 766-795 3-32 (184)
442 PRK08154 anaerobic benzoate ca 95.9 0.012 2.5E-07 66.8 6.0 36 761-796 130-165 (309)
443 PRK10416 signal recognition pa 95.9 0.13 2.8E-06 58.7 14.2 36 763-798 113-151 (318)
444 PRK05057 aroK shikimate kinase 95.9 0.0084 1.8E-07 62.1 4.3 33 765-797 5-37 (172)
445 TIGR01650 PD_CobS cobaltochela 95.9 0.12 2.7E-06 59.0 13.9 35 221-257 64-98 (327)
446 COG1102 Cmk Cytidylate kinase 95.8 0.0074 1.6E-07 62.1 3.6 28 767-794 3-30 (179)
447 COG5245 DYN1 Dynein, heavy cha 95.8 0.027 5.8E-07 72.9 9.1 141 762-915 1492-1661(3164)
448 cd03280 ABC_MutS2 MutS2 homolo 95.8 0.06 1.3E-06 56.9 10.7 22 765-786 29-50 (200)
449 PRK00279 adk adenylate kinase; 95.8 0.0077 1.7E-07 64.2 4.0 34 766-801 2-35 (215)
450 PRK09519 recA DNA recombinatio 95.8 0.051 1.1E-06 68.4 11.6 77 761-837 57-152 (790)
451 cd03243 ABC_MutS_homologs The 95.8 0.079 1.7E-06 56.0 11.4 22 764-785 29-50 (202)
452 COG1066 Sms Predicted ATP-depe 95.8 0.063 1.4E-06 62.5 11.3 98 761-858 90-205 (456)
453 TIGR00390 hslU ATP-dependent p 95.8 0.0081 1.7E-07 70.4 4.2 67 190-260 18-84 (441)
454 TIGR02238 recomb_DMC1 meiotic 95.8 0.054 1.2E-06 61.7 10.6 78 761-838 93-206 (313)
455 PRK06581 DNA polymerase III su 95.8 0.11 2.4E-06 57.1 12.5 146 765-929 16-176 (263)
456 TIGR03574 selen_PSTK L-seryl-t 95.8 0.025 5.3E-07 61.8 7.6 34 767-800 2-38 (249)
457 PF02562 PhoH: PhoH-like prote 95.8 0.02 4.3E-07 61.4 6.7 23 766-788 21-43 (205)
458 PRK04040 adenylate kinase; Pro 95.7 0.01 2.3E-07 62.5 4.5 31 764-794 2-34 (188)
459 PLN03187 meiotic recombination 95.7 0.073 1.6E-06 61.4 11.5 78 761-838 123-236 (344)
460 PF13238 AAA_18: AAA domain; P 95.7 0.0079 1.7E-07 57.4 3.2 22 767-788 1-22 (129)
461 PRK14527 adenylate kinase; Pro 95.7 0.0086 1.9E-07 62.7 3.7 31 764-794 6-36 (191)
462 PRK14730 coaE dephospho-CoA ki 95.7 0.033 7.1E-07 59.0 8.1 51 766-818 3-56 (195)
463 PRK06696 uridine kinase; Valid 95.7 0.023 5E-07 61.1 6.9 38 764-801 22-62 (223)
464 PRK09302 circadian clock prote 95.7 0.085 1.8E-06 63.7 12.4 77 761-837 28-144 (509)
465 TIGR00362 DnaA chromosomal rep 95.7 0.039 8.4E-07 64.6 9.2 98 484-622 199-298 (405)
466 PRK13900 type IV secretion sys 95.6 0.014 3.1E-07 66.8 5.3 71 764-834 160-246 (332)
467 cd01130 VirB11-like_ATPase Typ 95.6 0.02 4.4E-07 59.8 6.0 70 764-833 25-110 (186)
468 PF06414 Zeta_toxin: Zeta toxi 95.6 0.035 7.5E-07 58.6 7.7 67 762-828 13-98 (199)
469 PF08433 KTI12: Chromatin asso 95.6 0.026 5.7E-07 62.9 7.0 70 767-837 4-84 (270)
470 PRK13894 conjugal transfer ATP 95.5 0.022 4.9E-07 64.9 6.5 70 764-833 148-229 (319)
471 cd01125 repA Hexameric Replica 95.5 0.2 4.4E-06 54.3 13.6 21 767-787 4-24 (239)
472 PRK00149 dnaA chromosomal repl 95.5 0.042 9.1E-07 65.3 9.0 98 484-622 211-310 (450)
473 TIGR01448 recD_rel helicase, p 95.5 0.054 1.2E-06 68.2 10.3 101 766-883 340-459 (720)
474 cd03115 SRP The signal recogni 95.5 0.051 1.1E-06 55.7 8.5 33 767-799 3-38 (173)
475 PF00406 ADK: Adenylate kinase 95.5 0.012 2.6E-07 59.1 3.7 33 769-803 1-33 (151)
476 KOG0479 DNA replication licens 95.5 0.032 7E-07 66.8 7.6 155 730-896 302-481 (818)
477 PRK09302 circadian clock prote 95.5 0.14 2.9E-06 62.0 13.2 77 761-837 270-377 (509)
478 PRK04182 cytidylate kinase; Pr 95.5 0.013 2.9E-07 59.6 4.0 29 766-794 2-30 (180)
479 PF13521 AAA_28: AAA domain; P 95.4 0.013 2.9E-07 59.4 3.9 27 767-794 2-28 (163)
480 TIGR00064 ftsY signal recognit 95.4 0.34 7.4E-06 54.1 15.2 36 763-798 71-109 (272)
481 cd00561 CobA_CobO_BtuR ATP:cor 95.4 0.21 4.6E-06 51.6 12.5 111 767-893 5-149 (159)
482 PRK01184 hypothetical protein; 95.4 0.013 2.9E-07 60.6 3.8 29 766-795 3-31 (184)
483 TIGR02239 recomb_RAD51 DNA rep 95.4 0.077 1.7E-06 60.5 10.3 39 761-799 93-140 (316)
484 TIGR00767 rho transcription te 95.4 0.045 9.7E-07 64.1 8.4 27 763-789 167-193 (415)
485 PRK10263 DNA translocase FtsK; 95.4 0.14 2.9E-06 67.1 13.3 75 825-910 1142-1218(1355)
486 PF13245 AAA_19: Part of AAA d 95.4 0.025 5.4E-07 51.2 5.0 22 767-788 13-35 (76)
487 TIGR02173 cyt_kin_arch cytidyl 95.4 0.015 3.2E-07 58.9 3.9 28 767-794 3-30 (171)
488 PTZ00035 Rad51 protein; Provis 95.4 0.11 2.5E-06 59.7 11.4 39 761-799 115-162 (337)
489 TIGR02655 circ_KaiC circadian 95.3 0.15 3.3E-06 61.4 12.9 76 761-836 18-133 (484)
490 PF13086 AAA_11: AAA domain; P 95.3 0.012 2.7E-07 61.6 3.3 22 767-788 20-41 (236)
491 PLN02674 adenylate kinase 95.3 0.016 3.5E-07 63.7 4.3 36 764-801 31-66 (244)
492 PLN03186 DNA repair protein RA 95.3 0.087 1.9E-06 60.7 10.4 114 761-876 120-270 (342)
493 PTZ00202 tuzin; Provisional 95.3 0.23 4.9E-06 58.9 13.7 59 729-798 262-320 (550)
494 PF10236 DAP3: Mitochondrial r 95.3 0.51 1.1E-05 53.7 16.5 128 812-940 142-308 (309)
495 PRK00889 adenylylsulfate kinas 95.3 0.066 1.4E-06 55.0 8.6 37 764-800 4-43 (175)
496 COG2909 MalT ATP-dependent tra 95.3 0.15 3.2E-06 64.0 12.8 160 763-941 36-235 (894)
497 PRK13833 conjugal transfer pro 95.3 0.025 5.3E-07 64.7 5.9 69 765-833 145-225 (323)
498 PLN02199 shikimate kinase 95.3 0.028 6E-07 63.3 6.0 33 764-796 102-134 (303)
499 PTZ00112 origin recognition co 95.3 0.071 1.5E-06 67.3 9.9 94 472-606 855-951 (1164)
500 TIGR02788 VirB11 P-type DNA tr 95.3 0.021 4.5E-07 64.6 5.1 72 762-833 142-228 (308)
No 1
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-76 Score=670.34 Aligned_cols=475 Identities=27% Similarity=0.409 Sum_probs=378.2
Q ss_pred HHHHHHHHHhhCCCeEEEEcCchhh-hhh-ccCcchHHHHHHHHHHHHhcCCCCEEEEeeccCCCCCccccccccccccc
Q 001746 472 AMEALCEVLHSTQPLIVYFPDSSLW-LSR-AVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPN 549 (1018)
Q Consensus 472 ~i~~L~e~~~~~~p~Iiff~did~~-~~~-s~~~~~~~~~~s~~~~~l~~l~g~v~vi~~~~~~~~~~~~~~~~~~~~~~ 549 (1018)
.|..||+.|+++.|.||||||||-. ..| .-|+..-.+||+.|++.||.+.-.. + .++
T Consensus 270 kiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~-----~----~g~------------ 328 (802)
T KOG0733|consen 270 KIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEK-----T----KGD------------ 328 (802)
T ss_pred HHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccc-----c----CCC------------
Confidence 7889999999999999999999986 333 2245555688999999888885110 0 000
Q ss_pred cccccCCCCchhhhhcccccCCCcchHHHHh--ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhh
Q 001746 550 FGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLEDH 627 (1018)
Q Consensus 550 ~~~~~~~~~~~~~LvIGmTnR~d~iD~aL~r--rFe~~ieI~LPdeegRl~Il~iht~~~~~~~~~~~~v~~l~~~l~t~ 627 (1018)
..||||+|||||.+|+||+| |||++|.++.|++.+|..||.+..+.++-.. +-+..+|++ .|.
T Consensus 329 -----------~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g--~~d~~qlA~--lTP 393 (802)
T KOG0733|consen 329 -----------PVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG--DFDFKQLAK--LTP 393 (802)
T ss_pred -----------CeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC--CcCHHHHHh--cCC
Confidence 03567999999999999999 9999999999999999999999876655433 344666666 899
Q ss_pred cCCcccccccccchhhhhHhhhhhhHhh---ccc-------cccc---ccCC----------C----------Ccc----
Q 001746 628 ELSCTDLLHVNTDGVILTKQRAEKVVGW---AKN-------HYLS---SCSF----------P----------SVK---- 670 (1018)
Q Consensus 628 ~~~gaDL~~Lct~a~lls~~~~~~~V~~---a~~-------~~l~---~~~~----------~----------~v~---- 670 (1018)
||.||||.+||++|+.....++-..... ..+ .-+. ++.+ + ..+
T Consensus 394 GfVGADL~AL~~~Aa~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~ 473 (802)
T KOG0733|consen 394 GFVGADLMALCREAAFVAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSK 473 (802)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhcccCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcCh
Confidence 9999999999999987765553332211 000 0000 0000 0 000
Q ss_pred --CCceeeCHHHHHHHHHHhhhhhhccCCCcccccccchhHhhhhhcccccCCCCCCcccccccChHHHHHHHHHHHHcc
Q 001746 671 --GQRLHLPRESLEIAILRLKEQETASRKPTQNLKNLAKDEYESNFVSAVVPPGEIGVRFDDIGALEDVKKALNELVILP 748 (1018)
Q Consensus 671 --~~kv~V~~~df~~Al~~l~p~~~~~~~~~~~l~~~~~~e~e~~~~~~ii~~~e~~vtfdDIgGle~vk~~L~e~V~~p 748 (1018)
...+.|..+||..|+..++|+.. +.+.+. -|+++|+||||+++++.+|..+|.+|
T Consensus 474 E~~~~L~i~~eDF~~Al~~iQPSak---------------------REGF~t--VPdVtW~dIGaL~~vR~eL~~aI~~P 530 (802)
T KOG0733|consen 474 ELLEGLSIKFEDFEEALSKIQPSAK---------------------REGFAT--VPDVTWDDIGALEEVRLELNMAILAP 530 (802)
T ss_pred HHhccceecHHHHHHHHHhcCcchh---------------------ccccee--cCCCChhhcccHHHHHHHHHHHHhhh
Confidence 12455666677777766666521 122222 25799999999999999999999999
Q ss_pred cCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEE
Q 001746 749 MRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIF 828 (1018)
Q Consensus 749 L~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~s~~~ge~ek~I~~lF~~A~k~~PsIIf 828 (1018)
+++|++|.+.| +..|.|||||||||||||.||+|+|+|.|++|+.|.+++|+++|+|++|+.|+.+|..|+.++|||||
T Consensus 531 iK~pd~~k~lG-i~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIF 609 (802)
T KOG0733|consen 531 IKRPDLFKALG-IDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIF 609 (802)
T ss_pred ccCHHHHHHhC-CCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEE
Confidence 99999999999 56789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHh--ccCccccccCCCHHHHHH
Q 001746 829 VDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIR--RLPRRIYVDLPDAENRMK 906 (1018)
Q Consensus 829 IDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlr--RFd~~I~V~lPd~eeR~e 906 (1018)
+||||+|++.|.... .....+++|+||+.|||+.. ...|.|||+||+|+.+|+|++| ||++.++|++|+.++|.+
T Consensus 610 FDEiDaL~p~R~~~~-s~~s~RvvNqLLtElDGl~~--R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ 686 (802)
T KOG0733|consen 610 FDEIDALVPRRSDEG-SSVSSRVVNQLLTELDGLEE--RRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVA 686 (802)
T ss_pred ecchhhcCcccCCCC-chhHHHHHHHHHHHhccccc--ccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHH
Confidence 999999999987654 77788999999999999954 5679999999999999999999 999999999999999999
Q ss_pred HHHHHHh--ccCCCCcccHHHHHHHcc--CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC-CccCCCHHHHHHHH
Q 001746 907 ILRIFLA--HESLESGFQFNELANATE--GYSGSDLKNLCIAAAYRPVQELLEEERKRGKNDAAP-VLRPLKLEDFIQSK 981 (1018)
Q Consensus 907 ILk~~L~--~~~l~~dvdl~~LA~~Te--GfSgaDL~~L~~~Aa~~Airr~~~~~~~~~~~~~~~-~~rpLT~eDF~~Al 981 (1018)
||+.+++ +..+.+++|+++||..+. ||||+||..||++|.+.|+++.+.+........... ....+|+.||.+|+
T Consensus 687 ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~ 766 (802)
T KOG0733|consen 687 ILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAF 766 (802)
T ss_pred HHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHH
Confidence 9999999 777889999999999876 999999999999999999999876432211111000 02348999999999
Q ss_pred HhhCCCcchhhhhHHHHHHHHHHhCCCCCc
Q 001746 982 AKVGPSVAYDAASMNELRKWNEQYGEGGSR 1011 (1018)
Q Consensus 982 ~kv~PSvs~~~~~m~el~kW~diyG~~g~r 1011 (1018)
++++||++.... ..|...+..+|+....
T Consensus 767 ~~i~pSv~~~dr--~~Yd~l~k~~~L~~~~ 794 (802)
T KOG0733|consen 767 QRIRPSVSERDR--KKYDRLNKSRSLSTAT 794 (802)
T ss_pred HhcCCCccHHHH--HHHHHHhhhhcccccC
Confidence 999999986543 3466677777765443
No 2
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-70 Score=630.33 Aligned_cols=410 Identities=31% Similarity=0.524 Sum_probs=361.1
Q ss_pred HHHHHHHHHhhCC-CeEEEEcCchhh-hhhccCcchHHHHHHHHHHHHhcCC--CCEEEEeeccCCCCCccccccccccc
Q 001746 472 AMEALCEVLHSTQ-PLIVYFPDSSLW-LSRAVPRCNRKEFVRKVEEMFDQLS--GPVVLICGQNKNETGPKEKEKFTMIL 547 (1018)
Q Consensus 472 ~i~~L~e~~~~~~-p~Iiff~did~~-~~~s~~~~~~~~~~s~~~~~l~~l~--g~v~vi~~~~~~~~~~~~~~~~~~~~ 547 (1018)
.+-..||++.++| |+|||+||+|.+ ..+.+....-.++++.|.++||+|. ++||||
T Consensus 265 ~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl-------------------- 324 (693)
T KOG0730|consen 265 NLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVL-------------------- 324 (693)
T ss_pred HHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEE--------------------
Confidence 4566799999999 999999999998 4444333344689999999999998 888887
Q ss_pred cccccccCCCCchhhhhcccccCCCcchHHHHh-ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhh
Q 001746 548 PNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN-LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLED 626 (1018)
Q Consensus 548 ~~~~~~~~~~~~~~~LvIGmTnR~d~iD~aL~r-rFe~~ieI~LPdeegRl~Il~iht~~~~~~~~~~~~v~~l~~~l~t 626 (1018)
++||||+.||++|+| |||++++|+.|+..+|++|+.+|+++|.-. .++++...+-.+
T Consensus 325 ------------------~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~----~~~~l~~iA~~t 382 (693)
T KOG0730|consen 325 ------------------AATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL----SDVDLEDIAVST 382 (693)
T ss_pred ------------------EecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCc----chhhHHHHHHHc
Confidence 678888999999998 999999999999999999999998776533 334444445599
Q ss_pred hcCCcccccccccchhhhhHhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhhhhhccCCCcccccccc
Q 001746 627 HELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQETASRKPTQNLKNLA 706 (1018)
Q Consensus 627 ~~~~gaDL~~Lct~a~lls~~~~~~~V~~a~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~~~~~~~~~~~l~~~~ 706 (1018)
+||.||||.+||.++++-+..+ +.++|..|+..+.|+..+
T Consensus 383 hGyvGaDL~~l~~ea~~~~~r~----------------------------~~~~~~~A~~~i~psa~R------------ 422 (693)
T KOG0730|consen 383 HGYVGADLAALCREASLQATRR----------------------------TLEIFQEALMGIRPSALR------------ 422 (693)
T ss_pred cchhHHHHHHHHHHHHHHHhhh----------------------------hHHHHHHHHhcCCchhhh------------
Confidence 9999999999998877633111 567888888877776311
Q ss_pred hhHhhhhhcccccCCCCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHH
Q 001746 707 KDEYESNFVSAVVPPGEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALAT 786 (1018)
Q Consensus 707 ~~e~e~~~~~~ii~~~e~~vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~ 786 (1018)
..++ .-++++|+||||++++|.+|++.|.+|++.|+.|.+.| +.|++|||||||||||||++|+|+|+
T Consensus 423 ---------e~~v--e~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~G-i~ppkGVLlyGPPGC~KT~lAkalAn 490 (693)
T KOG0730|consen 423 ---------EILV--EMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFG-ISPPKGVLLYGPPGCGKTLLAKALAN 490 (693)
T ss_pred ---------heec--cCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhc-CCCCceEEEECCCCcchHHHHHHHhh
Confidence 1112 23679999999999999999999999999999999999 78999999999999999999999999
Q ss_pred HhCCcEEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccC
Q 001746 787 EAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKE 866 (1018)
Q Consensus 787 elg~~fi~Is~seL~s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~ 866 (1018)
+++++|+.+.+++++++|+|++|+.++.+|+.|+..+|||||+||||++...|++.. +.+..+++++||++|||+..
T Consensus 491 e~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~-~~v~~RVlsqLLtEmDG~e~-- 567 (693)
T KOG0730|consen 491 EAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSS-SGVTDRVLSQLLTEMDGLEA-- 567 (693)
T ss_pred hhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCc-cchHHHHHHHHHHHcccccc--
Confidence 999999999999999999999999999999999999999999999999999997543 48899999999999999954
Q ss_pred CCcEEEEEecCCCCCCcHHHHh--ccCccccccCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHccCCCHHHHHHHHHH
Q 001746 867 SQKILILGATNRPFDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIA 944 (1018)
Q Consensus 867 ~~~VlVIaTTN~p~~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeGfSgaDL~~L~~~ 944 (1018)
..+|+|||+||+|+.||+|++| ||++.|+||+|+.+.|.+||+.++++.++.+++|+.+||+.|+||||+||.++|++
T Consensus 568 ~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~ 647 (693)
T KOG0730|consen 568 LKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQE 647 (693)
T ss_pred cCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHH
Confidence 4579999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHHhhCCCcchh
Q 001746 945 AAYRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAYD 991 (1018)
Q Consensus 945 Aa~~Airr~~~~~~~~~~~~~~~~~rpLT~eDF~~Al~kv~PSvs~~ 991 (1018)
|+..|+++.++. ..|+.+||.+|++.++++++..
T Consensus 648 A~~~a~~e~i~a-------------~~i~~~hf~~al~~~r~s~~~~ 681 (693)
T KOG0730|consen 648 AALLALRESIEA-------------TEITWQHFEEALKAVRPSLTSE 681 (693)
T ss_pred HHHHHHHHhccc-------------ccccHHHHHHHHHhhcccCCHH
Confidence 999999986542 4589999999999999999853
No 3
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=2.1e-59 Score=574.41 Aligned_cols=462 Identities=29% Similarity=0.496 Sum_probs=369.9
Q ss_pred HHHHHHHHHhhCCCeEEEEcCchhhhhhc--cCcchHHHHHHHHHHHHhcCC--CCEEEEeeccCCCCCccccccccccc
Q 001746 472 AMEALCEVLHSTQPLIVYFPDSSLWLSRA--VPRCNRKEFVRKVEEMFDQLS--GPVVLICGQNKNETGPKEKEKFTMIL 547 (1018)
Q Consensus 472 ~i~~L~e~~~~~~p~Iiff~did~~~~~s--~~~~~~~~~~s~~~~~l~~l~--g~v~vi~~~~~~~~~~~~~~~~~~~~ 547 (1018)
.+..+|+.+...+|.||||||||.+.... .......++++.|..+|+++. |+++||
T Consensus 259 ~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI-------------------- 318 (733)
T TIGR01243 259 RLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVI-------------------- 318 (733)
T ss_pred HHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEE--------------------
Confidence 46788999999999999999999974321 112233467788888888876 344554
Q ss_pred cccccccCCCCchhhhhcccccCCCcchHHHHh--ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHh
Q 001746 548 PNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLE 625 (1018)
Q Consensus 548 ~~~~~~~~~~~~~~~LvIGmTnR~d~iD~aL~r--rFe~~ieI~LPdeegRl~Il~iht~~~~~~~~~~~~v~~l~~~l~ 625 (1018)
|+||+++.||++|+| ||+++++|++|+.++|.+||++|+..+. ...+.+++.++. .
T Consensus 319 ------------------~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~--l~~d~~l~~la~--~ 376 (733)
T TIGR01243 319 ------------------GATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMP--LAEDVDLDKLAE--V 376 (733)
T ss_pred ------------------eecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCC--CccccCHHHHHH--h
Confidence 777888889999998 9999999999999999999999964432 112345666666 7
Q ss_pred hhcCCcccccccccchhhhhHhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhhhhhccCCCccccccc
Q 001746 626 DHELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQETASRKPTQNLKNL 705 (1018)
Q Consensus 626 t~~~~gaDL~~Lct~a~lls~~~~~~~V~~a~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~~~~~~~~~~~l~~~ 705 (1018)
+.||.|+||..||.+++.....+. +... ...+.....+..-.....++.+||+.|+..+.|+...
T Consensus 377 t~G~~gadl~~l~~~a~~~al~r~---~~~~-~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~----------- 441 (733)
T TIGR01243 377 THGFVGADLAALAKEAAMAALRRF---IREG-KINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSAIR----------- 441 (733)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH---hhcc-ccccccccccchhcccccccHHHHHHHHhhccccccc-----------
Confidence 899999999999987765432221 1100 0000000001001234578999999999888775210
Q ss_pred chhHhhhhhcccccCCCCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHH
Q 001746 706 AKDEYESNFVSAVVPPGEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALA 785 (1018)
Q Consensus 706 ~~~e~e~~~~~~ii~~~e~~vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA 785 (1018)
+. .+ ..+.++|+||+|++.+++.|.+.+.+|+.+++.|.+.+ ..+++++|||||||||||++|+++|
T Consensus 442 --~~--------~~--~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g-~~~~~giLL~GppGtGKT~lakalA 508 (733)
T TIGR01243 442 --EV--------LV--EVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMG-IRPPKGVLLFGPPGTGKTLLAKAVA 508 (733)
T ss_pred --hh--------hc--cccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcC-CCCCceEEEECCCCCCHHHHHHHHH
Confidence 00 00 12457999999999999999999999999999999887 5788999999999999999999999
Q ss_pred HHhCCcEEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhcccccc
Q 001746 786 TEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSK 865 (1018)
Q Consensus 786 ~elg~~fi~Is~seL~s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~ 865 (1018)
++++++|+.++++++.++|+|++++.++.+|..|+..+|+||||||||.|++.++.........+++++|+..|+++..
T Consensus 509 ~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~- 587 (733)
T TIGR01243 509 TESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQE- 587 (733)
T ss_pred HhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccC-
Confidence 9999999999999999999999999999999999999999999999999998887655566778999999999999854
Q ss_pred CCCcEEEEEecCCCCCCcHHHHh--ccCccccccCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHccCCCHHHHHHHHH
Q 001746 866 ESQKILILGATNRPFDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCI 943 (1018)
Q Consensus 866 ~~~~VlVIaTTN~p~~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeGfSgaDL~~L~~ 943 (1018)
..+++||+|||+|+.||++++| ||++.|++++|+.++|.+||+.++++..+..++++..||..|+||||+||.++|+
T Consensus 588 -~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~ 666 (733)
T TIGR01243 588 -LSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCR 666 (733)
T ss_pred -CCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHH
Confidence 4579999999999999999998 9999999999999999999999999988888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCC---CCCCCccCCCHHHHHHHHHhhCCCcchhhhhHHHHHHHHHHhCC
Q 001746 944 AAAYRPVQELLEEERKRGKN---DAAPVLRPLKLEDFIQSKAKVGPSVAYDAASMNELRKWNEQYGE 1007 (1018)
Q Consensus 944 ~Aa~~Airr~~~~~~~~~~~---~~~~~~rpLT~eDF~~Al~kv~PSvs~~~~~m~el~kW~diyG~ 1007 (1018)
+|++.|+++.+......... .......+|+++||..|+++++|+++.+. +..+.+|...||.
T Consensus 667 ~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~~~~~--~~~~~~~~~~~~~ 731 (733)
T TIGR01243 667 EAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSVSKED--MLRYERLAKELKR 731 (733)
T ss_pred HHHHHHHHHHhhhccchhhhcccccccccCcccHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHhcc
Confidence 99999999875532211000 01112347999999999999999998653 5689999999874
No 4
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-58 Score=504.03 Aligned_cols=368 Identities=58% Similarity=0.911 Sum_probs=337.3
Q ss_pred cccchhhhhHhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhhhhhccCCCccccc--ccchhHhhhhh
Q 001746 637 VNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQETASRKPTQNLK--NLAKDEYESNF 714 (1018)
Q Consensus 637 Lct~a~lls~~~~~~~V~~a~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~~~~~~~~~~~l~--~~~~~e~e~~~ 714 (1018)
.|+....+..+.++.++++|++||+..+..+.+++ +.+++++++.++...++..... .+++ .+..++|+..+
T Consensus 4 ~~~~~~~~i~~~~~~i~~~A~~~~~~~~~~~~~d~-~~~~~~eS~~~~~~~l~~~~~~-----~s~k~~~i~~ne~E~~i 77 (386)
T KOG0737|consen 4 SFTKDDVLITSLIRKIVAAAISHHLVHLLVPRLDP-NLKASRESLEKTEELLKNLEAE-----LSLKYRIIQKNEYEKRI 77 (386)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHhccccccCh-hhhhhHHHHHHHHHHHHhhhhc-----cchhhhhhhhhHHHHHh
Confidence 45655555568899999999999999998888888 8889999999998777765332 1222 46789999999
Q ss_pred cccccCCCCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001746 715 VSAVVPPGEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFIS 794 (1018)
Q Consensus 715 ~~~ii~~~e~~vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~ 794 (1018)
...+++|.+++++|+||||++.+++++++.|.+|+++|++|..+++.+||+|||||||||||||++|+|+|+++|++|+.
T Consensus 78 ~s~~v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fIn 157 (386)
T KOG0737|consen 78 ASDVVPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFIN 157 (386)
T ss_pred hhcccchhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEE
Q 001746 795 ITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILG 874 (1018)
Q Consensus 795 Is~seL~s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIa 874 (1018)
|+++.+.++|+|+.++.++.+|..|.+.+|+||||||+|.+++.| ...+++++..+.++|+.+|||+.++.+.+|+|+|
T Consensus 158 v~~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R-~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlg 236 (386)
T KOG0737|consen 158 VSVSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQR-RSTDHEATAMMKNEFMALWDGLSSKDSERVLVLG 236 (386)
T ss_pred eeccccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhc-ccchHHHHHHHHHHHHHHhccccCCCCceEEEEe
Confidence 999999999999999999999999999999999999999999999 6778999999999999999999999988999999
Q ss_pred ecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHH
Q 001746 875 ATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELL 954 (1018)
Q Consensus 875 TTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeGfSgaDL~~L~~~Aa~~Airr~~ 954 (1018)
|||+|.+||++++||++++++|++|+.++|.+||+.+++.+.+++++|+.++|.+|+||||+||+++|..|++.++++++
T Consensus 237 ATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~ 316 (386)
T KOG0737|consen 237 ATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELL 316 (386)
T ss_pred CCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH-----HhcCCC--CC------CCCccCCCHHHHHHHHHhhCCCcchhhhhHHHHHHHHHHhCCCCCc
Q 001746 955 EEE-----RKRGKN--DA------APVLRPLKLEDFIQSKAKVGPSVAYDAASMNELRKWNEQYGEGGSR 1011 (1018)
Q Consensus 955 ~~~-----~~~~~~--~~------~~~~rpLT~eDF~~Al~kv~PSvs~~~~~m~el~kW~diyG~~g~r 1011 (1018)
..+ ...... .. .-..+|++++||..|+.+|.+++..+...|....+|++.||++|+|
T Consensus 317 ~~~~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~~~~~t~~~a~~~~~~~~~e~~sr 386 (386)
T KOG0737|consen 317 VSETGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSASVAMDATRMNALKQWNELYGEGGSR 386 (386)
T ss_pred HhcccchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhHHHHhhhhhHHHHHHHhhhccccCC
Confidence 875 110000 01 1226999999999999999999999999999999999999999986
No 5
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-55 Score=510.65 Aligned_cols=450 Identities=27% Similarity=0.452 Sum_probs=359.2
Q ss_pred HHHHHHHHHhhCCCeEEEEcCchhhhhhccCcchHHHHHHHHHHHHh----cCC-CCEEEEeeccCCCCCcccccccccc
Q 001746 472 AMEALCEVLHSTQPLIVYFPDSSLWLSRAVPRCNRKEFVRKVEEMFD----QLS-GPVVLICGQNKNETGPKEKEKFTMI 546 (1018)
Q Consensus 472 ~i~~L~e~~~~~~p~Iiff~did~~~~~s~~~~~~~~~~s~~~~~l~----~l~-g~v~vi~~~~~~~~~~~~~~~~~~~ 546 (1018)
.+++.|+-|+..+|.||||...|-+-..+.+ -.-.++.+.+..+|. +.+ ++++||
T Consensus 478 kl~~~f~~a~~~~pavifl~~~dvl~id~dg-ged~rl~~~i~~~ls~e~~~~~~~~~ivv------------------- 537 (953)
T KOG0736|consen 478 KLQAIFSRARRCSPAVLFLRNLDVLGIDQDG-GEDARLLKVIRHLLSNEDFKFSCPPVIVV------------------- 537 (953)
T ss_pred HHHHHHHHHhhcCceEEEEeccceeeecCCC-chhHHHHHHHHHHHhcccccCCCCceEEE-------------------
Confidence 4567788899999999999999986443322 112345555555554 001 344554
Q ss_pred ccccccccCCCCchhhhhcccccCCCcchHHHHhccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhh
Q 001746 547 LPNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYNLFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLED 626 (1018)
Q Consensus 547 ~~~~~~~~~~~~~~~~LvIGmTnR~d~iD~aL~rrFe~~ieI~LPdeegRl~Il~iht~~~~~~~~~~~~v~~l~~~l~t 626 (1018)
|.|++.+.|-..+++.|-.+|+++-|+++.|++||++.+.. ...+.+++.-..+.++
T Consensus 538 -------------------~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~----~~~n~~v~~k~~a~~t 594 (953)
T KOG0736|consen 538 -------------------ATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNH----LPLNQDVNLKQLARKT 594 (953)
T ss_pred -------------------EeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhc----cccchHHHHHHHHHhc
Confidence 55555566677788899999999999999999999987432 2244444444445599
Q ss_pred hcCCcccccccccchhhhhHhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhhhhhccCCCcccccccc
Q 001746 627 HELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQETASRKPTQNLKNLA 706 (1018)
Q Consensus 627 ~~~~gaDL~~Lct~a~lls~~~~~~~V~~a~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~~~~~~~~~~~l~~~~ 706 (1018)
.||+-.||++|.+...+..+.+++.-- +-..+.....-.+...-..++.+||..|+.+++...
T Consensus 595 ~gfs~~~L~~l~~~~s~~~~~~i~~~~---l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~f-------------- 657 (953)
T KOG0736|consen 595 SGFSFGDLEALVAHSSLAAKTRIKNKG---LAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEF-------------- 657 (953)
T ss_pred CCCCHHHHHHHhcCchHHHHHHHHhhc---ccccchhccccccccccceecHHHHHHHHHHHHHhh--------------
Confidence 999999999998766444434433211 111111111111223346789999999999887542
Q ss_pred hhHhhhhhcccccCCCCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHH
Q 001746 707 KDEYESNFVSAVVPPGEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALAT 786 (1018)
Q Consensus 707 ~~e~e~~~~~~ii~~~e~~vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~ 786 (1018)
...|-.|.-|+|+|+||||++++|++|.+.|.+||++|++|..+ .++..|||||||||||||.+|+|+|.
T Consensus 658 --------s~aiGAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssg--lrkRSGILLYGPPGTGKTLlAKAVAT 727 (953)
T KOG0736|consen 658 --------SDAIGAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSG--LRKRSGILLYGPPGTGKTLLAKAVAT 727 (953)
T ss_pred --------hhhcCCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhcc--ccccceeEEECCCCCchHHHHHHHHh
Confidence 23355566688999999999999999999999999999999865 57788999999999999999999999
Q ss_pred HhCCcEEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcc-hHHHHHHHHHHHhhhcccccc
Q 001746 787 EAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFE-HEATRRMRNEFMSAWDGLRSK 865 (1018)
Q Consensus 787 elg~~fi~Is~seL~s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~-~e~~~~il~~LL~~Ldgl~~~ 865 (1018)
++..+|+.|.+++|+++|+|++|++++++|+.|+..+|||||+||+|+++++|+..++ ..++.+++.+||.+|||+...
T Consensus 728 EcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~ 807 (953)
T KOG0736|consen 728 ECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDS 807 (953)
T ss_pred hceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCC
Confidence 9999999999999999999999999999999999999999999999999999987655 578999999999999999876
Q ss_pred CCCcEEEEEecCCCCCCcHHHHh--ccCccccccCC-CHHHHHHHHHHHHhccCCCCcccHHHHHHHcc-CCCHHHHHHH
Q 001746 866 ESQKILILGATNRPFDLDDAVIR--RLPRRIYVDLP-DAENRMKILRIFLAHESLESGFQFNELANATE-GYSGSDLKNL 941 (1018)
Q Consensus 866 ~~~~VlVIaTTN~p~~LD~aLlr--RFd~~I~V~lP-d~eeR~eILk~~L~~~~l~~dvdl~~LA~~Te-GfSgaDL~~L 941 (1018)
....|+||||||+|+.||++|+| |||+.++++++ +.+.+..+|+++.++..+++++|+.+||+.+. .|||+|+..|
T Consensus 808 ~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsL 887 (953)
T KOG0736|consen 808 SSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSL 887 (953)
T ss_pred CCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHH
Confidence 77899999999999999999999 99999999987 56779999999999999999999999999985 7999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCC--CCCCCCccCCCHHHHHHHHHhhCCCcchh
Q 001746 942 CIAAAYRPVQELLEEERKRGK--NDAAPVLRPLKLEDFIQSKAKVGPSVAYD 991 (1018)
Q Consensus 942 ~~~Aa~~Airr~~~~~~~~~~--~~~~~~~rpLT~eDF~~Al~kv~PSvs~~ 991 (1018)
|..|.+.|++|.+..-..... ....+....|+|+||.+|+++++||++.+
T Consensus 888 CSdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSvS~~ 939 (953)
T KOG0736|consen 888 CSDAMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSVSEQ 939 (953)
T ss_pred HHHHHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCcccHH
Confidence 999999999997765333211 12233445699999999999999999854
No 6
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-50 Score=474.63 Aligned_cols=418 Identities=33% Similarity=0.519 Sum_probs=358.2
Q ss_pred HHHHHHHHHHhhCCCeEEEEcCchhhh--hhccCcchHHHHHHHHHHHHhcCCCCEEEEeeccCCCCCcccccccccccc
Q 001746 471 IAMEALCEVLHSTQPLIVYFPDSSLWL--SRAVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILP 548 (1018)
Q Consensus 471 ~~i~~L~e~~~~~~p~Iiff~did~~~--~~s~~~~~~~~~~s~~~~~l~~l~g~v~vi~~~~~~~~~~~~~~~~~~~~~ 548 (1018)
.....+|+.+...+|.|||+||+|.+. +.+.+......+++.+..+|+++. ++.|+
T Consensus 63 ~~~~~~~~~a~~~~~~ii~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~-~~~v~--------------------- 120 (494)
T COG0464 63 LRLRELFEEAEKLAPSIIFIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLK-RGQVI--------------------- 120 (494)
T ss_pred HHHHHHHHHHHHhCCCeEeechhhhcccCccccccchhhHHHHHHHHhccccc-CCceE---------------------
Confidence 477889999999999999999999972 223456677788999999999998 43322
Q ss_pred ccccccCCCCchhhhhcccccCCCcchHHHHh--ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhh
Q 001746 549 NFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLED 626 (1018)
Q Consensus 549 ~~~~~~~~~~~~~~LvIGmTnR~d~iD~aL~r--rFe~~ieI~LPdeegRl~Il~iht~~~~~~~~~~~~v~~l~~~l~t 626 (1018)
++|+|||++.+|+++++ ||++++++++|+.++|++|+.+|+..|.... ..+...++. .+
T Consensus 121 ---------------~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~--~~~~~~~a~--~~ 181 (494)
T COG0464 121 ---------------VIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQIHTRLMFLGP--PGTGKTLAA--RT 181 (494)
T ss_pred ---------------EEeecCCccccChhHhCccccceeeecCCCCHHHHHHHHHHHHhcCCCcc--cccHHHHHH--hc
Confidence 46789999999999998 9999999999999999999999965554333 344555555 88
Q ss_pred hcCCcccccccccchhhhhHhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhhhhhccCCCcccccccc
Q 001746 627 HELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQETASRKPTQNLKNLA 706 (1018)
Q Consensus 627 ~~~~gaDL~~Lct~a~lls~~~~~~~V~~a~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~~~~~~~~~~~l~~~~ 706 (1018)
.||.++|+..||.++......+.. ......+.++.++|..+++++.++
T Consensus 182 ~~~~~~~~~~l~~~~~~~~~~r~~-----------------~~~~~~~~~~~~~~~~~l~~~~~~--------------- 229 (494)
T COG0464 182 VGKSGADLGALAKEAALRELRRAI-----------------DLVGEYIGVTEDDFEEALKKVLPS--------------- 229 (494)
T ss_pred CCccHHHHHHHHHHHHHHHHHhhh-----------------ccCcccccccHHHHHHHHHhcCcc---------------
Confidence 999999999999877765533321 123556778999999999887764
Q ss_pred hhHhhhhhcccccCCCCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHH
Q 001746 707 KDEYESNFVSAVVPPGEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALAT 786 (1018)
Q Consensus 707 ~~e~e~~~~~~ii~~~e~~vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~ 786 (1018)
..+-...+.++|+|+||++.+++.+++.+.+++.+++.|...+ .++++++|||||||||||+||+|+|+
T Consensus 230 ----------~~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~-~~~~~giLl~GpPGtGKT~lAkava~ 298 (494)
T COG0464 230 ----------RGVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLG-LRPPKGVLLYGPPGTGKTLLAKAVAL 298 (494)
T ss_pred ----------cccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcC-CCCCCeeEEECCCCCCHHHHHHHHHh
Confidence 0111234568999999999999999999999999999998766 67889999999999999999999999
Q ss_pred HhCCcEEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccC
Q 001746 787 EAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKE 866 (1018)
Q Consensus 787 elg~~fi~Is~seL~s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~ 866 (1018)
+++.+|+.++.++++++|+|+++++|+.+|..|++.+||||||||+|.|+..++... .....+++++|+..|+++..
T Consensus 299 ~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~-~~~~~r~~~~lL~~~d~~e~-- 375 (494)
T COG0464 299 ESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSE-DGSGRRVVGQLLTELDGIEK-- 375 (494)
T ss_pred hCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCC-chHHHHHHHHHHHHhcCCCc--
Confidence 999999999999999999999999999999999999999999999999999887542 33347899999999999854
Q ss_pred CCcEEEEEecCCCCCCcHHHHh--ccCccccccCCCHHHHHHHHHHHHhccCC--CCcccHHHHHHHccCCCHHHHHHHH
Q 001746 867 SQKILILGATNRPFDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESL--ESGFQFNELANATEGYSGSDLKNLC 942 (1018)
Q Consensus 867 ~~~VlVIaTTN~p~~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~l--~~dvdl~~LA~~TeGfSgaDL~~L~ 942 (1018)
...|+||+|||+|+.+|++++| ||+..++|++|+.++|.+||+.++..... ..++++..+++.|+||+|+||..+|
T Consensus 376 ~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~ 455 (494)
T COG0464 376 AEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALV 455 (494)
T ss_pred cCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHH
Confidence 4569999999999999999999 99999999999999999999999995543 5789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHHhhCCCcc
Q 001746 943 IAAAYRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQSKAKVGPSVA 989 (1018)
Q Consensus 943 ~~Aa~~Airr~~~~~~~~~~~~~~~~~rpLT~eDF~~Al~kv~PSvs 989 (1018)
.+|++.++++.. ..++|++||..|+++++|++.
T Consensus 456 ~ea~~~~~~~~~--------------~~~~~~~~~~~a~~~~~p~~~ 488 (494)
T COG0464 456 REAALEALREAR--------------RREVTLDDFLDALKKIKPSVT 488 (494)
T ss_pred HHHHHHHHHHhc--------------cCCccHHHHHHHHHhcCCCCC
Confidence 999999998753 257999999999999999986
No 7
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-51 Score=461.77 Aligned_cols=346 Identities=18% Similarity=0.232 Sum_probs=281.9
Q ss_pred eEEEEcCchhhhhh--cc--CcchHHHHHHHHHHHHhcCCCCEEEEeeccCCCCCccccccccccccccccccCCCCch-
Q 001746 486 LIVYFPDSSLWLSR--AV--PRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPNFGRLAKLPLPL- 560 (1018)
Q Consensus 486 ~Iiff~did~~~~~--s~--~~~~~~~~~s~~~~~l~~l~g~v~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 560 (1018)
-||.|||||-.+.+ |. .-..|.++|+.|++.||+.+ .+
T Consensus 326 HIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVe-------------------------------------qLN 368 (744)
T KOG0741|consen 326 HIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVE-------------------------------------QLN 368 (744)
T ss_pred eEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHH-------------------------------------hhh
Confidence 48999999998433 32 35678899988777665544 23
Q ss_pred hhhhcccccCCCcchHHHHh--ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhcCCcccccccc
Q 001746 561 QRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLEDHELSCTDLLHVN 638 (1018)
Q Consensus 561 ~~LvIGmTnR~d~iD~aL~r--rFe~~ieI~LPdeegRl~Il~iht~~~~~~~~~~~~v~~l~~~l~t~~~~gaDL~~Lc 638 (1018)
|+||||||||+|||||||+| |||+|+||+||||+||+|||+|||++|+++..+++|+|.-+.+..||||+||||++|
T Consensus 369 NILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAElegl- 447 (744)
T KOG0741|consen 369 NILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGL- 447 (744)
T ss_pred cEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHH-
Confidence 37888999999999999999 999999999999999999999999999999999998777777779999999999998
Q ss_pred cchhhhhHhhhhhhHhhcccccccccCCCCc---cCCceeeCHHHHHHHHHHhhhhhhccCCCcccccccchhHhhhhhc
Q 001746 639 TDGVILTKQRAEKVVGWAKNHYLSSCSFPSV---KGQRLHLPRESLEIAILRLKEQETASRKPTQNLKNLAKDEYESNFV 715 (1018)
Q Consensus 639 t~a~lls~~~~~~~V~~a~~~~l~~~~~~~v---~~~kv~V~~~df~~Al~~l~p~~~~~~~~~~~l~~~~~~e~e~~~~ 715 (1018)
++.+.++|++++++...+..+ +..+++|+++||.+||++++|+ |+.++++|+++..
T Consensus 448 ----------VksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPA-----------FG~see~l~~~~~ 506 (744)
T KOG0741|consen 448 ----------VKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPA-----------FGISEEDLERFVM 506 (744)
T ss_pred ----------HHHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcc-----------cCCCHHHHHHHHh
Confidence 456677888888875533333 3468999999999999999998 8999999999999
Q ss_pred ccccCCCCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001746 716 SAVVPPGEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISI 795 (1018)
Q Consensus 716 ~~ii~~~e~~vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~I 795 (1018)
++++.++.+ ...+.+.-..++.+ .+.++ ..+..++||+||||+|||+||..+|..+++||+.+
T Consensus 507 ~Gmi~~g~~---------v~~il~~G~llv~q-vk~s~-------~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKi 569 (744)
T KOG0741|consen 507 NGMINWGPP---------VTRILDDGKLLVQQ-VKNSE-------RSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKI 569 (744)
T ss_pred CCceeeccc---------HHHHHhhHHHHHHH-hhccc-------cCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEE
Confidence 999999865 34444444444443 34443 34557899999999999999999999999999997
Q ss_pred eccc-cchhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEE
Q 001746 796 TGST-LTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILG 874 (1018)
Q Consensus 796 s~se-L~s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIa 874 (1018)
-.++ +.+.........++.+|++|++++-+||++|+|++|+... +..+..++.++++|+.++...++ .+++++|++
T Consensus 570 iSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~v--pIGPRfSN~vlQaL~VllK~~pp-kg~kLli~~ 646 (744)
T KOG0741|consen 570 ISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYV--PIGPRFSNLVLQALLVLLKKQPP-KGRKLLIFG 646 (744)
T ss_pred eChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhccc--ccCchhhHHHHHHHHHHhccCCC-CCceEEEEe
Confidence 6665 4443334557889999999999999999999999998765 34578889999999999988754 467999999
Q ss_pred ecCCCCCCcH-HHHhccCccccccCCCH-HHHHHHHHH
Q 001746 875 ATNRPFDLDD-AVIRRLPRRIYVDLPDA-ENRMKILRI 910 (1018)
Q Consensus 875 TTN~p~~LD~-aLlrRFd~~I~V~lPd~-eeR~eILk~ 910 (1018)
||++.+.|.+ .++..|+..++||..+. ++..+++..
T Consensus 647 TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 647 TTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEE 684 (744)
T ss_pred cccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHH
Confidence 9998877765 67779999999987544 666666653
No 8
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-49 Score=431.70 Aligned_cols=281 Identities=43% Similarity=0.769 Sum_probs=256.4
Q ss_pred CCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 001746 722 GEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT 801 (1018)
Q Consensus 722 ~e~~vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~ 801 (1018)
+.+++.|+||.|+.+.|+.|+|.|.+|+..|+.|.. +.+|.+|||++||||||||+||+|+|.|++..|+.|+.+++.
T Consensus 205 ~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~G--irrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstlt 282 (491)
T KOG0738|consen 205 RNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKG--IRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLT 282 (491)
T ss_pred cCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhh--cccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhh
Confidence 457899999999999999999999999999999974 478999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCC--CcEEEEEecCCC
Q 001746 802 SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKES--QKILILGATNRP 879 (1018)
Q Consensus 802 s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~--~~VlVIaTTN~p 879 (1018)
++|-|++|+.++-+|++|+.++|++|||||||+|+..|++..+|++++++.++||.+|||+..... ..|+|+|+||.|
T Consensus 283 SKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~P 362 (491)
T KOG0738|consen 283 SKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFP 362 (491)
T ss_pred hhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999864422 358999999999
Q ss_pred CCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHH--
Q 001746 880 FDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEE-- 957 (1018)
Q Consensus 880 ~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeGfSgaDL~~L~~~Aa~~Airr~~~~~-- 957 (1018)
|+||++++|||.++|+||+|+.+.|..+++..+....+.++++++.||+.++||||+||.++|++|.+++++|.+...
T Consensus 363 WdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~ 442 (491)
T KOG0738|consen 363 WDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLTP 442 (491)
T ss_pred cchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999866431
Q ss_pred -HhcCCCCCCCCccCCCHHHHHHHHHhhCCCcchhhhhHHHHHHHHHHhCC
Q 001746 958 -RKRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAYDAASMNELRKWNEQYGE 1007 (1018)
Q Consensus 958 -~~~~~~~~~~~~rpLT~eDF~~Al~kv~PSvs~~~~~m~el~kW~diyG~ 1007 (1018)
.......+.+. .|++++||+.|+.+++||++. ..+..+.+|.+.||.
T Consensus 443 ~ei~~lakE~~~-~pv~~~Dfe~Al~~v~pSvs~--~d~~k~ekW~~efGS 490 (491)
T KOG0738|consen 443 REIRQLAKEEPK-MPVTNEDFEEALRKVRPSVSA--ADLEKYEKWMDEFGS 490 (491)
T ss_pred HHhhhhhhhccc-cccchhhHHHHHHHcCcCCCH--HHHHHHHHHHHHhcC
Confidence 11112223333 789999999999999999984 346778999999995
No 9
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-48 Score=424.47 Aligned_cols=247 Identities=39% Similarity=0.674 Sum_probs=229.3
Q ss_pred CCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch
Q 001746 723 EIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS 802 (1018)
Q Consensus 723 e~~vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~s 802 (1018)
.|.++|+||||+++++++|+|.|++|+.+|++|...| +.||+|||||||||||||+||+|+|++.++.|+.+.+++|+.
T Consensus 145 ~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~G-I~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVq 223 (406)
T COG1222 145 KPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELG-IDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQ 223 (406)
T ss_pred CCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcC-CCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHH
Confidence 4689999999999999999999999999999999999 799999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCC--cchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCC
Q 001746 803 KWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGA--FEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPF 880 (1018)
Q Consensus 803 ~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~--~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~ 880 (1018)
+|.|+..+.++.+|..|+.++||||||||||++.++|... ......++++.+||++|||+.+ ..+|-||+|||+++
T Consensus 224 KYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~--~~nvKVI~ATNR~D 301 (406)
T COG1222 224 KYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP--RGNVKVIMATNRPD 301 (406)
T ss_pred HHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC--CCCeEEEEecCCcc
Confidence 9999999999999999999999999999999999988643 2233345566699999999965 45799999999999
Q ss_pred CCcHHHHh--ccCccccccCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 001746 881 DLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEER 958 (1018)
Q Consensus 881 ~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeGfSgaDL~~L~~~Aa~~Airr~~~~~~ 958 (1018)
.|||||+| ||++.|+||+|+.+.|.+||+.|.++.++..++||+.||..|+|+||+||+++|.+|.+.|+++- +
T Consensus 302 ~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~----R 377 (406)
T COG1222 302 ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRER----R 377 (406)
T ss_pred ccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhc----c
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999872 2
Q ss_pred hcCCCCCCCCccCCCHHHHHHHHHhhCCC
Q 001746 959 KRGKNDAAPVLRPLKLEDFIQSKAKVGPS 987 (1018)
Q Consensus 959 ~~~~~~~~~~~rpLT~eDF~~Al~kv~PS 987 (1018)
..+|++||.+|..++...
T Consensus 378 -----------~~Vt~~DF~~Av~KV~~~ 395 (406)
T COG1222 378 -----------DEVTMEDFLKAVEKVVKK 395 (406)
T ss_pred -----------CeecHHHHHHHHHHHHhc
Confidence 469999999999998643
No 10
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-45 Score=424.81 Aligned_cols=401 Identities=27% Similarity=0.429 Sum_probs=321.3
Q ss_pred HHHHHHHHHhhCCCeEEEEcCchhhhhhccCcchHHHHHHHHHH-HH-------hcCCCCEEEEeeccCCCCCccccccc
Q 001746 472 AMEALCEVLHSTQPLIVYFPDSSLWLSRAVPRCNRKEFVRKVEE-MF-------DQLSGPVVLICGQNKNETGPKEKEKF 543 (1018)
Q Consensus 472 ~i~~L~e~~~~~~p~Iiff~did~~~~~s~~~~~~~~~~s~~~~-~l-------~~l~g~v~vi~~~~~~~~~~~~~~~~ 543 (1018)
.++..|-++-..+|+||++||+|-+...+-.+.-+...++..++ .+ -++.-.+.||+.-+..
T Consensus 482 ~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~---------- 551 (952)
T KOG0735|consen 482 FLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQEL---------- 551 (952)
T ss_pred HHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhh----------
Confidence 56677778888999999999999987744433334444443222 22 2233334555333322
Q ss_pred cccccccccccCCCCchhhhhcccccCCCcchHHHHh--ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Q 001746 544 TMILPNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELH 621 (1018)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~LvIGmTnR~d~iD~aL~r--rFe~~ieI~LPdeegRl~Il~iht~~~~~~~~~~~~v~~l~ 621 (1018)
..|.+-|.. +|..++-++.|+.+.|.+||.--..+ +......++++.++
T Consensus 552 ----------------------------qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~-~~~~~~~~dLd~ls 602 (952)
T KOG0735|consen 552 ----------------------------QTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSK-NLSDITMDDLDFLS 602 (952)
T ss_pred ----------------------------hhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHh-hhhhhhhHHHHHHH
Confidence 223333332 99999999999999999999765433 22334455566654
Q ss_pred HHHhhhcCCcccccccccchhhhhHhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhhhhhccCCCccc
Q 001746 622 KVLEDHELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQETASRKPTQN 701 (1018)
Q Consensus 622 ~~l~t~~~~gaDL~~Lct~a~lls~~~~~~~V~~a~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~~~~~~~~~~~ 701 (1018)
. +|-||.--||.-+ ++.+|..|+-.-+ -+..+ .++.++|..+|..+.|..-+.
T Consensus 603 ~--~TEGy~~~DL~if-----------VeRai~~a~leri-------s~~~k-lltke~f~ksL~~F~P~aLR~------ 655 (952)
T KOG0735|consen 603 V--KTEGYLATDLVIF-----------VERAIHEAFLERI-------SNGPK-LLTKELFEKSLKDFVPLALRG------ 655 (952)
T ss_pred H--hcCCccchhHHHH-----------HHHHHHHHHHHHh-------ccCcc-cchHHHHHHHHHhcChHHhhh------
Confidence 4 8889988788654 4556666652111 12335 688999999999888863211
Q ss_pred ccccchhHhhhhhcccccCCCCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHH
Q 001746 702 LKNLAKDEYESNFVSAVVPPGEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLA 781 (1018)
Q Consensus 702 l~~~~~~e~e~~~~~~ii~~~e~~vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LA 781 (1018)
+--....+..|+||||+.++++.|++.+++|-+.|.+|...+ ++-+.|||||||||||||+||
T Consensus 656 ----------------ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~p-lr~~~giLLyGppGcGKT~la 718 (952)
T KOG0735|consen 656 ----------------IKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCP-LRLRTGILLYGPPGCGKTLLA 718 (952)
T ss_pred ----------------ccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCC-cccccceEEECCCCCcHHHHH
Confidence 111112347899999999999999999999999999999887 577789999999999999999
Q ss_pred HHHHHHhCCcEEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhcc
Q 001746 782 KALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDG 861 (1018)
Q Consensus 782 rAIA~elg~~fi~Is~seL~s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldg 861 (1018)
.|+|..+++.||.+.+++++++|.|.+|++++.+|..|+..+|||+|+||+|+++++|+.. ...+..+++|+||++|||
T Consensus 719 ~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhD-sTGVTDRVVNQlLTelDG 797 (952)
T KOG0735|consen 719 SAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHD-STGVTDRVVNQLLTELDG 797 (952)
T ss_pred HHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCC-CCCchHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999754 356788999999999999
Q ss_pred ccccCCCcEEEEEecCCCCCCcHHHHh--ccCccccccCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHccCCCHHHHH
Q 001746 862 LRSKESQKILILGATNRPFDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLK 939 (1018)
Q Consensus 862 l~~~~~~~VlVIaTTN~p~~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeGfSgaDL~ 939 (1018)
...- ..|.|+|+|.+|+.+|+||+| |+++.++.+.|+..+|.+||+.+.....+..++|++.+|.+|+||||+||.
T Consensus 798 ~Egl--~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq 875 (952)
T KOG0735|consen 798 AEGL--DGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQ 875 (952)
T ss_pred cccc--ceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHH
Confidence 8653 579999999999999999999 999999999999999999999999988889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001746 940 NLCIAAAYRPVQELLEEER 958 (1018)
Q Consensus 940 ~L~~~Aa~~Airr~~~~~~ 958 (1018)
.|+-.|.+.|+++++....
T Consensus 876 ~ll~~A~l~avh~~l~~~~ 894 (952)
T KOG0735|consen 876 SLLYNAQLAAVHEILKRED 894 (952)
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 9999999999999887654
No 11
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.8e-46 Score=422.49 Aligned_cols=286 Identities=35% Similarity=0.580 Sum_probs=260.0
Q ss_pred CCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchh
Q 001746 724 IGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSK 803 (1018)
Q Consensus 724 ~~vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~s~ 803 (1018)
.++.|.||||+++...+|.+++.. +.+|+.|...| +.|++|||||||||||||+||+|||.++++||+.|+++++++.
T Consensus 185 snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lG-v~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSG 262 (802)
T KOG0733|consen 185 SNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLG-VRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSG 262 (802)
T ss_pred CCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcC-CCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcc
Confidence 478999999999999999999988 99999999999 6899999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccC--CCcEEEEEecCCCCC
Q 001746 804 WFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKE--SQKILILGATNRPFD 881 (1018)
Q Consensus 804 ~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~--~~~VlVIaTTN~p~~ 881 (1018)
+.|++|+.|+.+|+.|+..+|||+||||||++.++|... +.++.++++.+|++.||++.... +.+|+||||||+|+.
T Consensus 263 vSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~a-qreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDs 341 (802)
T KOG0733|consen 263 VSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEA-QREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDS 341 (802)
T ss_pred cCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhH-HHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcc
Confidence 999999999999999999999999999999999999874 67889999999999999987653 478999999999999
Q ss_pred CcHHHHh--ccCccccccCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001746 882 LDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERK 959 (1018)
Q Consensus 882 LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeGfSgaDL~~L~~~Aa~~Airr~~~~~~~ 959 (1018)
||++|+| ||++.|.+..|+..+|.+||+.++++..+..++|+..||..|.||.|+||.+||.+|++.|++|++.....
T Consensus 342 lDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~ 421 (802)
T KOG0733|consen 342 LDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSS 421 (802)
T ss_pred cCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccC
Confidence 9999999 99999999999999999999999999999999999999999999999999999999999999998874321
Q ss_pred ----cCC---------CC-----------C---------------C--------CCccCCCHHHHHHHHHhhCCCcchhh
Q 001746 960 ----RGK---------ND-----------A---------------A--------PVLRPLKLEDFIQSKAKVGPSVAYDA 992 (1018)
Q Consensus 960 ----~~~---------~~-----------~---------------~--------~~~rpLT~eDF~~Al~kv~PSvs~~~ 992 (1018)
... +. . . ...-.|+++||.+|+..++||..++.
T Consensus 422 p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREG 501 (802)
T KOG0733|consen 422 PLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKREG 501 (802)
T ss_pred ccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhccc
Confidence 000 00 0 0 01124889999999999999999998
Q ss_pred hhHHHHHHHHHHhCCCCCcc
Q 001746 993 ASMNELRKWNEQYGEGGSRR 1012 (1018)
Q Consensus 993 ~~m~el~kW~diyG~~g~rk 1012 (1018)
-...+.+.|+|+||+...|.
T Consensus 502 F~tVPdVtW~dIGaL~~vR~ 521 (802)
T KOG0733|consen 502 FATVPDVTWDDIGALEEVRL 521 (802)
T ss_pred ceecCCCChhhcccHHHHHH
Confidence 88889999999999987765
No 12
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-44 Score=382.71 Aligned_cols=287 Identities=40% Similarity=0.721 Sum_probs=253.4
Q ss_pred cccCCCCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001746 717 AVVPPGEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISIT 796 (1018)
Q Consensus 717 ~ii~~~e~~vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is 796 (1018)
+.|--..|++.|+|+.|++..|++|+|.|.+|++.|++|... .+|.++|||||||||||++||+|+|.+.+..|+.++
T Consensus 121 sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGk--R~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvS 198 (439)
T KOG0739|consen 121 SAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGK--RKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVS 198 (439)
T ss_pred hhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCC--CCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEee
Confidence 333345689999999999999999999999999999999743 679999999999999999999999999999999999
Q ss_pred ccccchhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEec
Q 001746 797 GSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGAT 876 (1018)
Q Consensus 797 ~seL~s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTT 876 (1018)
.++|+++|.|++++.++++|++|+.++|+||||||||.+++.|... +++..+++..+||.+|.|.-. ++..|+|+++|
T Consensus 199 SSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~en-EseasRRIKTEfLVQMqGVG~-d~~gvLVLgAT 276 (439)
T KOG0739|consen 199 SSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSEN-ESEASRRIKTEFLVQMQGVGN-DNDGVLVLGAT 276 (439)
T ss_pred hHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCC-chHHHHHHHHHHHHhhhcccc-CCCceEEEecC
Confidence 9999999999999999999999999999999999999999888654 688999999999999999864 46789999999
Q ss_pred CCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHH
Q 001746 877 NRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLE 955 (1018)
Q Consensus 877 N~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeGfSgaDL~~L~~~Aa~~Airr~~~ 955 (1018)
|.||.||.+++|||.++|++|+|+...|..+|+.++...+.. .+.|+.+|+.+|+||||+||.-+|+.|.+.+++++..
T Consensus 277 NiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvqs 356 (439)
T KOG0739|consen 277 NIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQS 356 (439)
T ss_pred CCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhhh
Confidence 999999999999999999999999999999999999865533 6789999999999999999999999999999999865
Q ss_pred HHHhcCCCC-------------------------------CCCCccCCCHHHHHHHHHhhCCCcchhhhhHHHHHHHHHH
Q 001746 956 EERKRGKND-------------------------------AAPVLRPLKLEDFIQSKAKVGPSVAYDAASMNELRKWNEQ 1004 (1018)
Q Consensus 956 ~~~~~~~~~-------------------------------~~~~~rpLT~eDF~~Al~kv~PSvs~~~~~m~el~kW~di 1004 (1018)
......... +.....+|||.||..++...+|.+..+. +....++.+-
T Consensus 357 AthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTvn~~D--l~k~~~Ft~d 434 (439)
T KOG0739|consen 357 ATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTVNEDD--LLKHEKFTED 434 (439)
T ss_pred hhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCCCHHH--HHHHHHHHHh
Confidence 432211000 0112357999999999999999998653 5567899999
Q ss_pred hCCCC
Q 001746 1005 YGEGG 1009 (1018)
Q Consensus 1005 yG~~g 1009 (1018)
||++|
T Consensus 435 FGqEg 439 (439)
T KOG0739|consen 435 FGQEG 439 (439)
T ss_pred hccCC
Confidence 99876
No 13
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=3.7e-38 Score=368.60 Aligned_cols=259 Identities=23% Similarity=0.389 Sum_probs=225.7
Q ss_pred CCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch
Q 001746 723 EIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS 802 (1018)
Q Consensus 723 e~~vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~s 802 (1018)
.+.++|+||||++.+|+.+.+..... +..+...| ..+++|||||||||||||++|+++|++++.+|+.++++.+.+
T Consensus 222 ~~~~~~~dvgGl~~lK~~l~~~~~~~---~~~~~~~g-l~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~ 297 (489)
T CHL00195 222 SVNEKISDIGGLDNLKDWLKKRSTSF---SKQASNYG-LPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFG 297 (489)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHh---hHHHHhcC-CCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcc
Confidence 35678999999999999998765332 12223445 577899999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCC
Q 001746 803 KWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDL 882 (1018)
Q Consensus 803 ~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~L 882 (1018)
++.|+++..++++|..|+..+||||||||||.++..+....+.....+++++|+..++.. ..+|+||||||+++.|
T Consensus 298 ~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~----~~~V~vIaTTN~~~~L 373 (489)
T CHL00195 298 GIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK----KSPVFVVATANNIDLL 373 (489)
T ss_pred cccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC----CCceEEEEecCChhhC
Confidence 999999999999999999999999999999999876554445667788999999888753 3579999999999999
Q ss_pred cHHHHh--ccCccccccCCCHHHHHHHHHHHHhccCCC--CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 001746 883 DDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLE--SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEER 958 (1018)
Q Consensus 883 D~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~l~--~dvdl~~LA~~TeGfSgaDL~~L~~~Aa~~Airr~~~~~~ 958 (1018)
|++++| ||+..++|++|+.++|.+||+.++.+.... .+.++..||..|+||||+||.++|.+|++.|+.+
T Consensus 374 d~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~------ 447 (489)
T CHL00195 374 PLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYE------ 447 (489)
T ss_pred CHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHc------
Confidence 999998 999999999999999999999999876432 4789999999999999999999999999888753
Q ss_pred hcCCCCCCCCccCCCHHHHHHHHHhhCCCcchhhhhHHHHHHHHHHh
Q 001746 959 KRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAYDAASMNELRKWNEQY 1005 (1018)
Q Consensus 959 ~~~~~~~~~~~rpLT~eDF~~Al~kv~PSvs~~~~~m~el~kW~diy 1005 (1018)
.++++.+||..|++++.|........+..+++|...+
T Consensus 448 ----------~~~lt~~dl~~a~~~~~Pls~~~~e~i~~~~~Wa~~~ 484 (489)
T CHL00195 448 ----------KREFTTDDILLALKQFIPLAQTEKEQIEALQNWASSG 484 (489)
T ss_pred ----------CCCcCHHHHHHHHHhcCCCcccCHHHHHHHHHHHHcC
Confidence 1579999999999999999877777788999999764
No 14
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-40 Score=372.16 Aligned_cols=249 Identities=35% Similarity=0.581 Sum_probs=229.0
Q ss_pred ccCCCCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 001746 718 VVPPGEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITG 797 (1018)
Q Consensus 718 ii~~~e~~vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~ 797 (1018)
+.|....+++|+|+-|.++.|++|+|.|.+ |+.|+.|.+.| -+-|+||||.||||||||+||+|+|.|.++||++.++
T Consensus 293 v~p~~~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLG-GKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sG 370 (752)
T KOG0734|consen 293 VDPEQMKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLG-GKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASG 370 (752)
T ss_pred cChhhhcccccccccChHHHHHHHHHHHHH-hcCcHHhhhcc-CcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccc
Confidence 344445689999999999999999999877 99999999987 4667999999999999999999999999999999999
Q ss_pred cccchhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecC
Q 001746 798 STLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATN 877 (1018)
Q Consensus 798 seL~s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN 877 (1018)
+++-..++|...+.|+.+|..|++.+||||||||||++.++|.....+ ..+..+|+||..|||+..+ ..|+|||+||
T Consensus 371 SEFdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~-y~kqTlNQLLvEmDGF~qN--eGiIvigATN 447 (752)
T KOG0734|consen 371 SEFDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQH-YAKQTLNQLLVEMDGFKQN--EGIIVIGATN 447 (752)
T ss_pred cchhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHH-HHHHHHHHHHHHhcCcCcC--CceEEEeccC
Confidence 999999999999999999999999999999999999999998765444 8899999999999999654 5799999999
Q ss_pred CCCCCcHHHHh--ccCccccccCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHH
Q 001746 878 RPFDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLE 955 (1018)
Q Consensus 878 ~p~~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeGfSgaDL~~L~~~Aa~~Airr~~~ 955 (1018)
.|+.||++|.| |||+.|.||.||...|.+||+.|+.+..+..++|+..||+-|.||+|+||.||++.||..|....
T Consensus 448 fpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dg-- 525 (752)
T KOG0734|consen 448 FPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDG-- 525 (752)
T ss_pred ChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcC--
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999998876542
Q ss_pred HHHhcCCCCCCCCccCCCHHHHHHHHHhhCC
Q 001746 956 EERKRGKNDAAPVLRPLKLEDFIQSKAKVGP 986 (1018)
Q Consensus 956 ~~~~~~~~~~~~~~rpLT~eDF~~Al~kv~P 986 (1018)
...++|.|++.|..++--
T Consensus 526 -------------a~~VtM~~LE~akDrIlM 543 (752)
T KOG0734|consen 526 -------------AEMVTMKHLEFAKDRILM 543 (752)
T ss_pred -------------cccccHHHHhhhhhheee
Confidence 145899999999988863
No 15
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-39 Score=396.01 Aligned_cols=362 Identities=20% Similarity=0.223 Sum_probs=244.8
Q ss_pred HHHHHHHHhhCCCeEEEEcCchhh--hhhccCcchHHHHHHHHHHHHhcCC--CCEEEEeeccCCCCCcccccccccccc
Q 001746 473 MEALCEVLHSTQPLIVYFPDSSLW--LSRAVPRCNRKEFVRKVEEMFDQLS--GPVVLICGQNKNETGPKEKEKFTMILP 548 (1018)
Q Consensus 473 i~~L~e~~~~~~p~Iiff~did~~--~~~s~~~~~~~~~~s~~~~~l~~l~--g~v~vi~~~~~~~~~~~~~~~~~~~~~ 548 (1018)
+.-|||||+++||||||||||||| +++|+|+|+|++|||||+++||+|+ ||||||
T Consensus 352 lrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvi--------------------- 410 (1080)
T KOG0732|consen 352 LRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVI--------------------- 410 (1080)
T ss_pred HHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEE---------------------
Confidence 456999999999999999999997 7779999999999999999999999 666666
Q ss_pred ccccccCCCCchhhhhcccccCCCcchHHHHh--ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhh
Q 001746 549 NFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLED 626 (1018)
Q Consensus 549 ~~~~~~~~~~~~~~LvIGmTnR~d~iD~aL~r--rFe~~ieI~LPdeegRl~Il~iht~~~~~~~~~~~~v~~l~~~l~t 626 (1018)
|+|||+|-||+||+| ||+++|||+||+.++|.+|+.|||.+ |.......-...+++ .+
T Consensus 411 -----------------gATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrk-w~~~i~~~l~~~la~--~t 470 (1080)
T KOG0732|consen 411 -----------------GATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRK-WEPPISRELLLWLAE--ET 470 (1080)
T ss_pred -----------------cccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccC-CCCCCCHHHHHHHHH--hc
Confidence 555566666666665 99999999999999999999999543 335555666777777 88
Q ss_pred hcCCcccccccccchhhhhHhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhhhhhccC-CCccc----
Q 001746 627 HELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQETASR-KPTQN---- 701 (1018)
Q Consensus 627 ~~~~gaDL~~Lct~a~lls~~~~~~~V~~a~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~~~~~~-~~~~~---- 701 (1018)
.||.||||++|||+|+++..++.++++++. ..+..++...++|.-.+|..|+.++.|+..+.. .+..+
T Consensus 471 ~gy~gaDlkaLCTeAal~~~~r~~Pq~y~s-------~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~~~~~s~Pl~~~ 543 (1080)
T KOG0732|consen 471 SGYGGADLKALCTEAALIALRRSFPQIYSS-------SDKLLIDVALIKVEVRDFVEAMSRITPSSRRSSVIFSRPLSTY 543 (1080)
T ss_pred cccchHHHHHHHHHHhhhhhccccCeeecc-------cccccccchhhhhhhHhhhhhhhccCCCCCccccCCCCCCCcc
Confidence 899999999999999999966666555544 444446778888999999999999999865532 11111
Q ss_pred ccccch-hHhhhhhcccccCCCCCCcccccccChHHHHHHHHHHHHcccCCchh-hccCCCCCCCceEEEEcCCCChHHH
Q 001746 702 LKNLAK-DEYESNFVSAVVPPGEIGVRFDDIGALEDVKKALNELVILPMRRPDL-FSRGNLLRPCKGILLFGPPGTGKTL 779 (1018)
Q Consensus 702 l~~~~~-~e~e~~~~~~ii~~~e~~vtfdDIgGle~vk~~L~e~V~~pL~~~el-f~~~gl~~p~~gVLL~GPPGTGKT~ 779 (1018)
++.+.. ..+.. .+. .+.-+......+.+...+..+..+. |.-.-+.+ ..+||.|..|.|.++
T Consensus 544 ~~~ll~~~~~~~-~iq-------------~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~--~~lli~~~~~~g~~~ 607 (1080)
T KOG0732|consen 544 LKPLLPFQDALE-DIQ-------------GLMDVASSMAKIEEHLKLLVRSFESNFAIRLICR--PRLLINGGKGSGQDY 607 (1080)
T ss_pred eecccchHHHHH-Hhh-------------cchhHHhhhhhHHHHhHHHHHhhhcccchhhhcC--cHHhcCCCcccccCc
Confidence 111110 00000 011 1111222222222222221111111 11111112 238899999999999
Q ss_pred HHHHHHHHh-CCcEEEEeccccchhh-hhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHh
Q 001746 780 LAKALATEA-GANFISITGSTLTSKW-FGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 857 (1018)
Q Consensus 780 LArAIA~el-g~~fi~Is~seL~s~~-~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~ 857 (1018)
+..||.+.+ +.++...+.+.++... .+..+..|..+|.+|++..||||||.++|.|....... +...|+.
T Consensus 608 lg~aIlh~~~~~~v~s~~issll~d~~~~~~~~~iv~i~~eaR~~~psi~~ip~~d~w~~~~p~s--------~~~~~~~ 679 (1080)
T KOG0732|consen 608 LGPAILHRLEGLPVQSLDISSLLSDEGTEDLEEEIVHIFMEARKTTPSIVFIPNVDEWARVIPVS--------FLEEFLS 679 (1080)
T ss_pred ccHHHHHHHhccchHHHHHHHHHhccccccHHHHHHHHHHHHhccCCceeeccchhhhhhcCcch--------hhhcchh
Confidence 999999988 8888888888887776 77889999999999999999999999999997654322 2334444
Q ss_pred hhccccccCCCcEEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhc
Q 001746 858 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAH 914 (1018)
Q Consensus 858 ~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~ 914 (1018)
.++.... ...+..+-+-...+.-.+ .....+..|..+.+..+|+..++.
T Consensus 680 ~l~~~~~--~t~i~e~~t~~~~~~~~~------~~~~t~~~p~~~s~~~ff~r~I~~ 728 (1080)
T KOG0732|consen 680 SLDEKAL--STPILELHTWDTSFESVN------KSVVTLSKPSAESTGAFFKRLIRK 728 (1080)
T ss_pred cchhhhh--ccchhhhccccccccccC------ccccccccchhhhhHHHHHHHHHH
Confidence 4432211 112222222111100000 122345668888888777776653
No 16
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-38 Score=358.91 Aligned_cols=288 Identities=44% Similarity=0.751 Sum_probs=256.1
Q ss_pred hcccccCCCCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 001746 714 FVSAVVPPGEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFI 793 (1018)
Q Consensus 714 ~~~~ii~~~e~~vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi 793 (1018)
+.+.|+. ....+.|+|++|++.+++.+.+++.+|+.++++|... ..|.+++||+||||+|||+|++|||.|+++.|+
T Consensus 139 i~~EI~~-~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl--r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff 215 (428)
T KOG0740|consen 139 IRNEIGD-TLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL--REPVRGLLLFGPPGTGKTMLAKAIATESGATFF 215 (428)
T ss_pred HHHHHhc-cCCcccccCCcchhhHHHHhhhhhhhcccchHhhhcc--ccccchhheecCCCCchHHHHHHHHhhhcceEe
Confidence 3333433 3456999999999999999999999999999999744 578899999999999999999999999999999
Q ss_pred EEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEE
Q 001746 794 SITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILIL 873 (1018)
Q Consensus 794 ~Is~seL~s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVI 873 (1018)
.++++.|.++|.|+.++.++.+|..|+..+|+||||||||.++..| ...+++..+++..+|+..+++......++|+||
T Consensus 216 ~iSassLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~R-s~~e~e~srr~ktefLiq~~~~~s~~~drvlvi 294 (428)
T KOG0740|consen 216 NISASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKR-SDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVI 294 (428)
T ss_pred eccHHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhc-CCcccccchhhhhHHHhhhccccCCCCCeEEEE
Confidence 9999999999999999999999999999999999999999999998 455788899999999999999998888899999
Q ss_pred EecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccC-CCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHH
Q 001746 874 GATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHES-LESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQE 952 (1018)
Q Consensus 874 aTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~-l~~dvdl~~LA~~TeGfSgaDL~~L~~~Aa~~Airr 952 (1018)
||||.||.+|++++|||...+++|+|+.+.|..+|+.++...+ ...+.+++.|+++|+||+|+||.++|.+|++..++.
T Consensus 295 gaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~ 374 (428)
T KOG0740|consen 295 GATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRE 374 (428)
T ss_pred ecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhh
Confidence 9999999999999999999999999999999999999998773 236678999999999999999999999999998887
Q ss_pred HHHHHHhcCCCCCCCCccCCCHHHHHHHHHhhCCCcchhhhhHHHHHHHHHHhCCCC
Q 001746 953 LLEEERKRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAYDAASMNELRKWNEQYGEGG 1009 (1018)
Q Consensus 953 ~~~~~~~~~~~~~~~~~rpLT~eDF~~Al~kv~PSvs~~~~~m~el~kW~diyG~~g 1009 (1018)
..... ..........++++..||..|++.++|+++.+. +..+.+|++.+|..+
T Consensus 375 ~~~~~--~~~~~~~~~~r~i~~~df~~a~~~i~~~~s~~~--l~~~~~~~~~fg~~~ 427 (428)
T KOG0740|consen 375 LGGTT--DLEFIDADKIRPITYPDFKNAFKNIKPSVSLEG--LEKYEKWDKEFGSSE 427 (428)
T ss_pred cccch--hhhhcchhccCCCCcchHHHHHHhhccccCccc--cchhHHHhhhhcccc
Confidence 64420 111123445689999999999999999998654 556889999999865
No 17
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-37 Score=319.87 Aligned_cols=247 Identities=35% Similarity=0.595 Sum_probs=225.2
Q ss_pred CCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchh
Q 001746 724 IGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSK 803 (1018)
Q Consensus 724 ~~vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~s~ 803 (1018)
|..+++-+||++.+++++++.+.+|.++|++|...| +..|+|+|||||||||||.||+|+|++..+.|+.+++++++.+
T Consensus 142 PDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLG-IaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk 220 (404)
T KOG0728|consen 142 PDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALG-IAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK 220 (404)
T ss_pred CccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcC-CCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHH
Confidence 467899999999999999999999999999999999 5667999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCC---CcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCC
Q 001746 804 WFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGG---AFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPF 880 (1018)
Q Consensus 804 ~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~---~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~ 880 (1018)
|.|+....++.+|-.|+.++|+|||+||||++...|.. +++.++.+ .+.+|+++|||+.. ..++-||.+||+.+
T Consensus 221 ~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqr-tmlellnqldgfea--tknikvimatnrid 297 (404)
T KOG0728|consen 221 YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQR-TMLELLNQLDGFEA--TKNIKVIMATNRID 297 (404)
T ss_pred HhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHH-HHHHHHHhcccccc--ccceEEEEeccccc
Confidence 99999999999999999999999999999999877643 23445544 45589999999954 45799999999999
Q ss_pred CCcHHHHh--ccCccccccCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 001746 881 DLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEER 958 (1018)
Q Consensus 881 ~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeGfSgaDL~~L~~~Aa~~Airr~~~~~~ 958 (1018)
.||++++| |.++.|+||+|+.+.|.+||+.+-++.++...+++..+|+...|.||++++.+|.+|.+.|+++- +
T Consensus 298 ild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrer----r 373 (404)
T KOG0728|consen 298 ILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRER----R 373 (404)
T ss_pred cccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHh----h
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999862 2
Q ss_pred hcCCCCCCCCccCCCHHHHHHHHHhhCCCcc
Q 001746 959 KRGKNDAAPVLRPLKLEDFIQSKAKVGPSVA 989 (1018)
Q Consensus 959 ~~~~~~~~~~~rpLT~eDF~~Al~kv~PSvs 989 (1018)
..+|.|||+-|..++-..-+
T Consensus 374 -----------vhvtqedfemav~kvm~k~~ 393 (404)
T KOG0728|consen 374 -----------VHVTQEDFEMAVAKVMQKDS 393 (404)
T ss_pred -----------ccccHHHHHHHHHHHHhccc
Confidence 46899999999998865443
No 18
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-37 Score=324.74 Aligned_cols=245 Identities=34% Similarity=0.598 Sum_probs=226.0
Q ss_pred CCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch
Q 001746 723 EIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS 802 (1018)
Q Consensus 723 e~~vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~s 802 (1018)
.|..+++||||+++++++|.+.|.+|+.+++.|...| ++||+|+|+|||||||||++|+|.|...+..|..+.++.++.
T Consensus 165 kPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lg-i~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQ 243 (424)
T KOG0652|consen 165 KPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLG-IRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 243 (424)
T ss_pred CCcccccccccHHHHHHHHHHHhccccccHHHHHhcC-CCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHh
Confidence 4677899999999999999999999999999999999 799999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCC---cchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCC
Q 001746 803 KWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGA---FEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP 879 (1018)
Q Consensus 803 ~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~---~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p 879 (1018)
.|.|...+.++..|..|+..+|+||||||+|.+..+|..+ ++.++.+ .+.+|+.+|||+.+. .+|-||++||+.
T Consensus 244 MfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQR-TMLELLNQLDGFss~--~~vKviAATNRv 320 (424)
T KOG0652|consen 244 MFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQR-TMLELLNQLDGFSSD--DRVKVIAATNRV 320 (424)
T ss_pred hhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHH-HHHHHHHhhcCCCCc--cceEEEeecccc
Confidence 9999999999999999999999999999999999887543 3445544 445899999999654 579999999999
Q ss_pred CCCcHHHHh--ccCccccccCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 001746 880 FDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEE 957 (1018)
Q Consensus 880 ~~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeGfSgaDL~~L~~~Aa~~Airr~~~~~ 957 (1018)
+.|||+++| |+++.|+||.|+.+.|..|++.+.++.++.+++++++||+.|++|.|++.+++|.+|.+.|+++..
T Consensus 321 DiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~a--- 397 (424)
T KOG0652|consen 321 DILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGA--- 397 (424)
T ss_pred cccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhccc---
Confidence 999999999 999999999999999999999999999999999999999999999999999999999999998731
Q ss_pred HhcCCCCCCCCccCCCHHHHHHHHHhhCC
Q 001746 958 RKRGKNDAAPVLRPLKLEDFIQSKAKVGP 986 (1018)
Q Consensus 958 ~~~~~~~~~~~~rpLT~eDF~~Al~kv~P 986 (1018)
..++.+||..++.++++
T Consensus 398 ------------tev~heDfmegI~eVqa 414 (424)
T KOG0652|consen 398 ------------TEVTHEDFMEGILEVQA 414 (424)
T ss_pred ------------ccccHHHHHHHHHHHHH
Confidence 35899999999988764
No 19
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-36 Score=317.32 Aligned_cols=246 Identities=33% Similarity=0.573 Sum_probs=226.6
Q ss_pred CCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 001746 722 GEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT 801 (1018)
Q Consensus 722 ~e~~vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~ 801 (1018)
..|.+++.||||++-+|+++++.+++|+...++|...| +.||+|||||||||||||+||+|+|++..+.||.+.+++++
T Consensus 148 ekpdvsy~diggld~qkqeireavelplt~~~ly~qig-idpprgvllygppg~gktml~kava~~t~a~firvvgsefv 226 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIG-IDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 226 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhccchHHHHHHHhC-CCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHH
Confidence 45789999999999999999999999999999999998 78999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCc--chHHHHHHHHHHHhhhccccccCCCcEEEEEecCCC
Q 001746 802 SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAF--EHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP 879 (1018)
Q Consensus 802 s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~--~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p 879 (1018)
.+|.|+....++.+|..|+..+|+||||||||.+..+|.... ......+++-+|+++|||+.. ..+|-||.+||+.
T Consensus 227 qkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq--~~nvkvimatnra 304 (408)
T KOG0727|consen 227 QKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQ--TTNVKVIMATNRA 304 (408)
T ss_pred HHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCc--ccceEEEEecCcc
Confidence 999999999999999999999999999999999998886432 234456788899999999954 4578999999999
Q ss_pred CCCcHHHHh--ccCccccccCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 001746 880 FDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEE 957 (1018)
Q Consensus 880 ~~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeGfSgaDL~~L~~~Aa~~Airr~~~~~ 957 (1018)
+.|||+++| |+++.|+||+|+..+++-+|..+..+.++.+++|++.+..+-+..||+||..+|++|.+.|+++-
T Consensus 305 dtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~n---- 380 (408)
T KOG0727|consen 305 DTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVREN---- 380 (408)
T ss_pred cccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhc----
Confidence 999999999 99999999999999999999999999999999999999999999999999999999999999862
Q ss_pred HhcCCCCCCCCccCCCHHHHHHHHHhhC
Q 001746 958 RKRGKNDAAPVLRPLKLEDFIQSKAKVG 985 (1018)
Q Consensus 958 ~~~~~~~~~~~~rpLT~eDF~~Al~kv~ 985 (1018)
+ -.+...||++|.+.+.
T Consensus 381 r-----------yvvl~kd~e~ay~~~v 397 (408)
T KOG0727|consen 381 R-----------YVVLQKDFEKAYKTVV 397 (408)
T ss_pred c-----------eeeeHHHHHHHHHhhc
Confidence 1 3477899999987664
No 20
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=2.1e-36 Score=318.80 Aligned_cols=243 Identities=30% Similarity=0.471 Sum_probs=214.5
Q ss_pred CcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhh
Q 001746 725 GVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKW 804 (1018)
Q Consensus 725 ~vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~s~~ 804 (1018)
+++|+|++|+++.|...+-++.+ |.+|+.|..+. |++||+|||||||||++|+|+|+++..||+.+.+.+|++.+
T Consensus 117 ~it~ddViGqEeAK~kcrli~~y-LenPe~Fg~WA----PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGeh 191 (368)
T COG1223 117 DITLDDVIGQEEAKRKCRLIMEY-LENPERFGDWA----PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEH 191 (368)
T ss_pred cccHhhhhchHHHHHHHHHHHHH-hhChHHhcccC----cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHH
Confidence 58999999999999998765554 99999998763 58999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcH
Q 001746 805 FGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDD 884 (1018)
Q Consensus 805 ~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~LD~ 884 (1018)
+|+..+.|+.+|+.|++.+|||+||||+|.+.-.|.-..-......++|.||+.|||+. ++..|+.||+||+|+.||+
T Consensus 192 VGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~--eneGVvtIaaTN~p~~LD~ 269 (368)
T COG1223 192 VGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIK--ENEGVVTIAATNRPELLDP 269 (368)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcc--cCCceEEEeecCChhhcCH
Confidence 99999999999999999999999999999998665432223345678899999999995 5667999999999999999
Q ss_pred HHHhccCccccccCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHccCCCHHHHHHH-HHHHHHHHHHHHHHHHHhcCCC
Q 001746 885 AVIRRLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNL-CIAAAYRPVQELLEEERKRGKN 963 (1018)
Q Consensus 885 aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeGfSgaDL~~L-~~~Aa~~Airr~~~~~~~~~~~ 963 (1018)
++++||...|+|.+|+.++|.+|++.+++..++.-+.++..+++.|.|+||+||+.- +..|.++|+.+. +
T Consensus 270 aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed----~----- 340 (368)
T COG1223 270 AIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAED----R----- 340 (368)
T ss_pred HHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhc----h-----
Confidence 999999999999999999999999999999999989999999999999999999864 455666666542 2
Q ss_pred CCCCCccCCCHHHHHHHHHhhCCCcc
Q 001746 964 DAAPVLRPLKLEDFIQSKAKVGPSVA 989 (1018)
Q Consensus 964 ~~~~~~rpLT~eDF~~Al~kv~PSvs 989 (1018)
..|+.+||..|+++-++...
T Consensus 341 ------e~v~~edie~al~k~r~~r~ 360 (368)
T COG1223 341 ------EKVEREDIEKALKKERKRRA 360 (368)
T ss_pred ------hhhhHHHHHHHHHhhccccC
Confidence 35899999999998776554
No 21
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-36 Score=358.71 Aligned_cols=248 Identities=38% Similarity=0.651 Sum_probs=227.4
Q ss_pred CCCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 001746 721 PGEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTL 800 (1018)
Q Consensus 721 ~~e~~vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL 800 (1018)
.++++++|.|+.|.+++|++|.|+|.. |++|+.|.+.| .+.|+|+||+||||||||.||+|+|.|+|+||+.++++++
T Consensus 303 ~~~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lG-AKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEF 380 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELG-AKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEF 380 (774)
T ss_pred CCCCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcC-CcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHH
Confidence 355779999999999999999999977 99999999999 7889999999999999999999999999999999999999
Q ss_pred chhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCC---CcchHHHHHHHHHHHhhhccccccCCCcEEEEEecC
Q 001746 801 TSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGG---AFEHEATRRMRNEFMSAWDGLRSKESQKILILGATN 877 (1018)
Q Consensus 801 ~s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~---~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN 877 (1018)
+..+.|.....++.+|..|+..+||||||||||.+...|.+ ...+......+|+|+..|||+... ..|+|+|+||
T Consensus 381 vE~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~--~~vi~~a~tn 458 (774)
T KOG0731|consen 381 VEMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS--KGVIVLAATN 458 (774)
T ss_pred HHHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC--CcEEEEeccC
Confidence 99999999999999999999999999999999999988842 233455567899999999999654 5799999999
Q ss_pred CCCCCcHHHHh--ccCccccccCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHH
Q 001746 878 RPFDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELL 954 (1018)
Q Consensus 878 ~p~~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeGfSgaDL~~L~~~Aa~~Airr~~ 954 (1018)
+|+.||++++| ||++.|.++.|+...|..||+.+++...+. +++++..+|.+|.||+|+||.++|++|+..|+++-
T Consensus 459 r~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~- 537 (774)
T KOG0731|consen 459 RPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKG- 537 (774)
T ss_pred CccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhc-
Confidence 99999999999 999999999999999999999999999885 88899999999999999999999999999998862
Q ss_pred HHHHhcCCCCCCCCccCCCHHHHHHHHHhhCCC
Q 001746 955 EEERKRGKNDAAPVLRPLKLEDFIQSKAKVGPS 987 (1018)
Q Consensus 955 ~~~~~~~~~~~~~~~rpLT~eDF~~Al~kv~PS 987 (1018)
...|+..||..|++.+...
T Consensus 538 --------------~~~i~~~~~~~a~~Rvi~G 556 (774)
T KOG0731|consen 538 --------------LREIGTKDLEYAIERVIAG 556 (774)
T ss_pred --------------cCccchhhHHHHHHHHhcc
Confidence 2569999999999966544
No 22
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.1e-37 Score=325.61 Aligned_cols=244 Identities=37% Similarity=0.618 Sum_probs=223.7
Q ss_pred CCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch
Q 001746 723 EIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS 802 (1018)
Q Consensus 723 e~~vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~s 802 (1018)
.|..+|.||||++.++++|++.|++||.+|++|...| ++||+||+|||+||||||.||+|+|+...+.|+.+.+++|+.
T Consensus 179 aP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemG-ikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQ 257 (440)
T KOG0726|consen 179 APQETYADIGGLESQIQEIKESVELPLTHPEYYEEMG-IKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQ 257 (440)
T ss_pred CchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcC-CCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHH
Confidence 4567999999999999999999999999999999998 799999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCC---cchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCC
Q 001746 803 KWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGA---FEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP 879 (1018)
Q Consensus 803 ~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~---~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p 879 (1018)
+|.|+..+.++++|..|..++|+|+||||||++..+|-.. ++.+.. +.+.+||+++||+.+. ..|-||.+||+.
T Consensus 258 kylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQ-rtmLELLNQldGFdsr--gDvKvimATnri 334 (440)
T KOG0726|consen 258 KYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQ-RTMLELLNQLDGFDSR--GDVKVIMATNRI 334 (440)
T ss_pred HHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHH-HHHHHHHHhccCcccc--CCeEEEEecccc
Confidence 9999999999999999999999999999999999877532 234444 4445999999999764 568899999999
Q ss_pred CCCcHHHHh--ccCccccccCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 001746 880 FDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEE 957 (1018)
Q Consensus 880 ~~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeGfSgaDL~~L~~~Aa~~Airr~~~~~ 957 (1018)
+.|||+|+| |+++.|.|+.||...+..||..+.....+..+++++.+...-+.+||+||+++|.+|.+.|+++-
T Consensus 335 e~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRer---- 410 (440)
T KOG0726|consen 335 ETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRER---- 410 (440)
T ss_pred cccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHH----
Confidence 999999999 99999999999999999999999999999999999999988899999999999999999999873
Q ss_pred HhcCCCCCCCCccCCCHHHHHHHHHhhC
Q 001746 958 RKRGKNDAAPVLRPLKLEDFIQSKAKVG 985 (1018)
Q Consensus 958 ~~~~~~~~~~~~rpLT~eDF~~Al~kv~ 985 (1018)
+ -.+|++||.+|.++|-
T Consensus 411 R-----------m~vt~~DF~ka~e~V~ 427 (440)
T KOG0726|consen 411 R-----------MKVTMEDFKKAKEKVL 427 (440)
T ss_pred H-----------hhccHHHHHHHHHHHH
Confidence 2 2489999999998773
No 23
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=2.3e-35 Score=338.34 Aligned_cols=247 Identities=32% Similarity=0.561 Sum_probs=223.8
Q ss_pred CCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch
Q 001746 723 EIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS 802 (1018)
Q Consensus 723 e~~vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~s 802 (1018)
.|.++|+||||++.++++|++.+.+|+.+|++|...| +.+++++|||||||||||++|+++|++++.+|+.+.++++..
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~G-l~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIG-IDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcC-CCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 4679999999999999999999999999999999988 578899999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCc--chHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCC
Q 001746 803 KWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAF--EHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPF 880 (1018)
Q Consensus 803 ~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~--~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~ 880 (1018)
+|.|+.+..++.+|..|+..+|+||||||||.++..+.... ......+++.+|+..++++.. ..+++||+|||+++
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~--~~~v~VI~aTN~~d 295 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ--TTNVKVIMATNRAD 295 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC--CCCEEEEEecCCch
Confidence 99999999999999999999999999999999987764321 223455777889999988744 34699999999999
Q ss_pred CCcHHHHh--ccCccccccCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 001746 881 DLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEER 958 (1018)
Q Consensus 881 ~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeGfSgaDL~~L~~~Aa~~Airr~~~~~~ 958 (1018)
.||++++| ||+..|+|++|+.++|..||+.++.+..+..++++..+|..|+||+|+||.++|.+|++.|+++.
T Consensus 296 ~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~----- 370 (398)
T PTZ00454 296 TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKN----- 370 (398)
T ss_pred hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC-----
Confidence 99999998 99999999999999999999999999888899999999999999999999999999999999762
Q ss_pred hcCCCCCCCCccCCCHHHHHHHHHhhCCC
Q 001746 959 KRGKNDAAPVLRPLKLEDFIQSKAKVGPS 987 (1018)
Q Consensus 959 ~~~~~~~~~~~rpLT~eDF~~Al~kv~PS 987 (1018)
...|+++||.+|+.++...
T Consensus 371 ----------~~~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 371 ----------RYVILPKDFEKGYKTVVRK 389 (398)
T ss_pred ----------CCccCHHHHHHHHHHHHhc
Confidence 1369999999999998654
No 24
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-35 Score=312.14 Aligned_cols=246 Identities=35% Similarity=0.595 Sum_probs=225.3
Q ss_pred CCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 001746 722 GEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT 801 (1018)
Q Consensus 722 ~e~~vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~ 801 (1018)
..|.+++.|+||..++++.|++.|+.|+.+|+.|...| +.||+|||||||||||||.+|+|+|+..++.||.+-+++|+
T Consensus 170 ekpdvty~dvggckeqieklrevve~pll~perfv~lg-idppkgvllygppgtgktl~aravanrtdacfirvigselv 248 (435)
T KOG0729|consen 170 EKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLG-IDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELV 248 (435)
T ss_pred cCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcC-CCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHH
Confidence 34789999999999999999999999999999999999 78999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCC---cchHHHHHHHHHHHhhhccccccCCCcEEEEEecCC
Q 001746 802 SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGA---FEHEATRRMRNEFMSAWDGLRSKESQKILILGATNR 878 (1018)
Q Consensus 802 s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~---~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~ 878 (1018)
.+|+|+....++.+|++|+..+.||||+||||.+.+.|... .++++.+. +.+++.+|||+.+. .++-|+.+||+
T Consensus 249 qkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrt-mleli~qldgfdpr--gnikvlmatnr 325 (435)
T KOG0729|consen 249 QKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRT-MLELINQLDGFDPR--GNIKVLMATNR 325 (435)
T ss_pred HHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHH-HHHHHHhccCCCCC--CCeEEEeecCC
Confidence 99999999999999999999999999999999999888543 34555544 45889999999654 56889999999
Q ss_pred CCCCcHHHHh--ccCccccccCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHH
Q 001746 879 PFDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEE 956 (1018)
Q Consensus 879 p~~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeGfSgaDL~~L~~~Aa~~Airr~~~~ 956 (1018)
|+.||++|+| |+++.++|.+|+.+.|..||+.+.+...+..++.++-||..+..-+|++|+.+|.+|.+.|++.-
T Consensus 326 pdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairar--- 402 (435)
T KOG0729|consen 326 PDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRAR--- 402 (435)
T ss_pred CCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHH---
Confidence 9999999999 99999999999999999999999999999999999999999999999999999999999998752
Q ss_pred HHhcCCCCCCCCccCCCHHHHHHHHHhhCC
Q 001746 957 ERKRGKNDAAPVLRPLKLEDFIQSKAKVGP 986 (1018)
Q Consensus 957 ~~~~~~~~~~~~~rpLT~eDF~~Al~kv~P 986 (1018)
+ ...|..||..|+.++..
T Consensus 403 -r-----------k~atekdfl~av~kvvk 420 (435)
T KOG0729|consen 403 -R-----------KVATEKDFLDAVNKVVK 420 (435)
T ss_pred -h-----------hhhhHHHHHHHHHHHHH
Confidence 2 24688999999998853
No 25
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=1.6e-34 Score=331.16 Aligned_cols=251 Identities=39% Similarity=0.655 Sum_probs=225.1
Q ss_pred CCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch
Q 001746 723 EIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS 802 (1018)
Q Consensus 723 e~~vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~s 802 (1018)
.+.++|+||+|++++++.|.+.+..|+.+++.|...| +.++++||||||||||||++|+++|++++.+|+.++++++..
T Consensus 125 ~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g-~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 125 SPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVG-IEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcC-CCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 4678999999999999999999999999999999888 678899999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcc--hHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCC
Q 001746 803 KWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFE--HEATRRMRNEFMSAWDGLRSKESQKILILGATNRPF 880 (1018)
Q Consensus 803 ~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~--~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~ 880 (1018)
.|.|+.+..++.+|..|+..+|+||||||||.++..+..... .....+.+.+++..++++.. ..++.||+|||+++
T Consensus 204 ~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~--~~~v~VI~aTn~~~ 281 (389)
T PRK03992 204 KFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP--RGNVKIIAATNRID 281 (389)
T ss_pred hhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC--CCCEEEEEecCChh
Confidence 999999999999999999999999999999999877654321 22345566678888887643 34799999999999
Q ss_pred CCcHHHHh--ccCccccccCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 001746 881 DLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEER 958 (1018)
Q Consensus 881 ~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeGfSgaDL~~L~~~Aa~~Airr~~~~~~ 958 (1018)
.+|++++| ||+..|.|++|+.++|.+||+.++....+..++++..+|..|+||+|+||.++|.+|++.|+++.
T Consensus 282 ~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~----- 356 (389)
T PRK03992 282 ILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDD----- 356 (389)
T ss_pred hCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC-----
Confidence 99999998 99999999999999999999999998888888999999999999999999999999999998751
Q ss_pred hcCCCCCCCCccCCCHHHHHHHHHhhCCCcchh
Q 001746 959 KRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAYD 991 (1018)
Q Consensus 959 ~~~~~~~~~~~rpLT~eDF~~Al~kv~PSvs~~ 991 (1018)
...|+++||.+|+.+++++...+
T Consensus 357 ----------~~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 357 ----------RTEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred ----------CCCcCHHHHHHHHHHHhcccccc
Confidence 14599999999999999887654
No 26
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-35 Score=342.08 Aligned_cols=263 Identities=37% Similarity=0.620 Sum_probs=246.5
Q ss_pred CcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhh
Q 001746 725 GVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKW 804 (1018)
Q Consensus 725 ~vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~s~~ 804 (1018)
.++ +++||+......+++.+.+|++.+..|...+ ..+++++|+|||||||||++++|+|++.++.++.++++++++++
T Consensus 181 ~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g-~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 181 EVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIG-IKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred ccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcC-CCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 356 8999999999999999999999999999888 68999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcC-CeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCc
Q 001746 805 FGDAEKLTKALFSFASKLA-PVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLD 883 (1018)
Q Consensus 805 ~ge~ek~I~~lF~~A~k~~-PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~LD 883 (1018)
.|+++++++..|+.|.+++ |+||||||+|.+++++..... ..+++..+++.+++++. ...+++||++||+|..||
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~--~e~Rv~sqlltL~dg~~--~~~~vivl~atnrp~sld 334 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD--VESRVVSQLLTLLDGLK--PDAKVIVLAATNRPDSLD 334 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch--HHHHHHHHHHHHHhhCc--CcCcEEEEEecCCccccC
Confidence 9999999999999999999 999999999999999876543 67899999999999995 346899999999999999
Q ss_pred HHHHh-ccCccccccCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 001746 884 DAVIR-RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKRGK 962 (1018)
Q Consensus 884 ~aLlr-RFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeGfSgaDL~~L~~~Aa~~Airr~~~~~~~~~~ 962 (1018)
++++| ||++.+.+..|+..+|.+|++.+++..+..+++++..+|..|+||+|+||..+|.+|++.++++
T Consensus 335 ~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~---------- 404 (693)
T KOG0730|consen 335 PALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR---------- 404 (693)
T ss_pred hhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh----------
Confidence 99998 9999999999999999999999999999888899999999999999999999999999998876
Q ss_pred CCCCCCccCCCHHHHHHHHHhhCCCcchhhhhHHHHHHHHHHhCCCCCccc
Q 001746 963 NDAAPVLRPLKLEDFIQSKAKVGPSVAYDAASMNELRKWNEQYGEGGSRRK 1013 (1018)
Q Consensus 963 ~~~~~~~rpLT~eDF~~Al~kv~PSvs~~~~~m~el~kW~diyG~~g~rkk 1013 (1018)
++++|..|+..++|+..++.....+.+.|+||||++..|++
T Consensus 405 ----------~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~e 445 (693)
T KOG0730|consen 405 ----------TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKRE 445 (693)
T ss_pred ----------hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHHH
Confidence 78999999999999998887766688999999999988874
No 27
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=1.8e-33 Score=331.84 Aligned_cols=269 Identities=34% Similarity=0.549 Sum_probs=232.8
Q ss_pred CCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 001746 722 GEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT 801 (1018)
Q Consensus 722 ~e~~vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~ 801 (1018)
..+.++|+||+|++++++++.+++.. +.+++.|...+ ..+++++||+||||||||++|+++|++++.+|+.++++++.
T Consensus 48 ~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g-~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 125 (495)
T TIGR01241 48 EKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLG-AKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV 125 (495)
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcC-CCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHH
Confidence 35689999999999999999998876 88898888776 57789999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCC--cchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCC
Q 001746 802 SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGA--FEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP 879 (1018)
Q Consensus 802 s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~--~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p 879 (1018)
..+.+..++.++.+|..|+..+|+||||||||.+...++.. ........++++|+..++++.. ..+++||+|||+|
T Consensus 126 ~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~--~~~v~vI~aTn~~ 203 (495)
T TIGR01241 126 EMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT--NTGVIVIAATNRP 203 (495)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC--CCCeEEEEecCCh
Confidence 99999999999999999999999999999999999877542 1234456788999999998854 3569999999999
Q ss_pred CCCcHHHHh--ccCccccccCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 001746 880 FDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEE 957 (1018)
Q Consensus 880 ~~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeGfSgaDL~~L~~~Aa~~Airr~~~~~ 957 (1018)
+.||++++| ||++.|+++.|+.++|.+||+.++....+..++++..+|..|.||+|+||.++|++|+..|+++.
T Consensus 204 ~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~---- 279 (495)
T TIGR01241 204 DVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKN---- 279 (495)
T ss_pred hhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC----
Confidence 999999998 99999999999999999999999998877788899999999999999999999999988776541
Q ss_pred HhcCCCCCCCCccCCCHHHHHHHHHhhCCCcchhhhhHHHHHHHHHHhCCCC
Q 001746 958 RKRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAYDAASMNELRKWNEQYGEGG 1009 (1018)
Q Consensus 958 ~~~~~~~~~~~~rpLT~eDF~~Al~kv~PSvs~~~~~m~el~kW~diyG~~g 1009 (1018)
..+|+.+||..|+.++..........+++..+|...|.+.|
T Consensus 280 -----------~~~i~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~A~hEaG 320 (495)
T TIGR01241 280 -----------KTEITMNDIEEAIDRVIAGPEKKSRVISEKEKKLVAYHEAG 320 (495)
T ss_pred -----------CCCCCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHh
Confidence 14699999999999987654443444556666766665544
No 28
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=2.1e-33 Score=324.59 Aligned_cols=246 Identities=36% Similarity=0.579 Sum_probs=220.8
Q ss_pred CCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch
Q 001746 723 EIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS 802 (1018)
Q Consensus 723 e~~vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~s 802 (1018)
.+.++|+||+|+++++++|.+++.+|+.++++|...+ +.+++++|||||||||||++|+++|++++.+|+.+.++++..
T Consensus 177 ~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~g-i~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 177 APLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIG-IKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcC-CCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 3568999999999999999999999999999999888 578899999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCC--cchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCC
Q 001746 803 KWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGA--FEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPF 880 (1018)
Q Consensus 803 ~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~--~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~ 880 (1018)
.|.|+.+..++.+|..|....|+||||||||.++..+... .......+.+.+|+..++++.. ...+.||+|||+++
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~--~~~V~VI~ATNr~d 333 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS--RGDVKVIMATNRIE 333 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc--cCCeEEEEecCChH
Confidence 9999999999999999999999999999999998776432 1222344556788888888743 34699999999999
Q ss_pred CCcHHHHh--ccCccccccCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 001746 881 DLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEER 958 (1018)
Q Consensus 881 ~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeGfSgaDL~~L~~~Aa~~Airr~~~~~~ 958 (1018)
.||++++| ||++.|+|+.|+.++|.+||+.++.+..+..++++..++..++||+|+||+++|.+|++.|+++-
T Consensus 334 ~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~----- 408 (438)
T PTZ00361 334 SLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRER----- 408 (438)
T ss_pred HhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc-----
Confidence 99999998 99999999999999999999999999888889999999999999999999999999999998762
Q ss_pred hcCCCCCCCCccCCCHHHHHHHHHhhCC
Q 001746 959 KRGKNDAAPVLRPLKLEDFIQSKAKVGP 986 (1018)
Q Consensus 959 ~~~~~~~~~~~rpLT~eDF~~Al~kv~P 986 (1018)
...|+++||..|+.++..
T Consensus 409 ----------r~~Vt~~D~~~A~~~v~~ 426 (438)
T PTZ00361 409 ----------RMKVTQADFRKAKEKVLY 426 (438)
T ss_pred ----------CCccCHHHHHHHHHHHHh
Confidence 145999999999999853
No 29
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-34 Score=334.19 Aligned_cols=264 Identities=33% Similarity=0.559 Sum_probs=234.1
Q ss_pred CCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch
Q 001746 723 EIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS 802 (1018)
Q Consensus 723 e~~vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~s 802 (1018)
..+++|.|+.|.++.|+++.|.|.. ++.|..|...|. +-|+|+||+||||||||+||+|+|.++++||+.++.++++.
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGa-kiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVe 221 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGA-KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 221 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhccc-ccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhh
Confidence 4679999999999999999999977 899999998884 78899999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCC--cchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCC
Q 001746 803 KWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGA--FEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPF 880 (1018)
Q Consensus 803 ~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~--~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~ 880 (1018)
.++|-....++.+|..|++++||||||||||.+...|+.. ..+..-...+|+++..+||.. .+..|+||++||+|+
T Consensus 222 mfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~--~~~gviviaaTNRpd 299 (596)
T COG0465 222 MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG--GNEGVIVIAATNRPD 299 (596)
T ss_pred hhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCC--CCCceEEEecCCCcc
Confidence 9999999999999999999999999999999999888532 234555678999999999996 346799999999999
Q ss_pred CCcHHHHh--ccCccccccCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 001746 881 DLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEER 958 (1018)
Q Consensus 881 ~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeGfSgaDL~~L~~~Aa~~Airr~~~~~~ 958 (1018)
.||++|+| ||++.|.++.||...|++|++.++++..+.+++++..+|+.|.||+|+||.+++++|+..|.++-
T Consensus 300 VlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n----- 374 (596)
T COG0465 300 VLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRN----- 374 (596)
T ss_pred cchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhc-----
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999998862
Q ss_pred hcCCCCCCCCccCCCHHHHHHHHHhhCCCcchhhh----hHHHHHHHHHHh
Q 001746 959 KRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAYDAA----SMNELRKWNEQY 1005 (1018)
Q Consensus 959 ~~~~~~~~~~~rpLT~eDF~~Al~kv~PSvs~~~~----~m~el~kW~diy 1005 (1018)
...+++.||.+|+.++..-...... .....+.|.+.+
T Consensus 375 ----------~~~i~~~~i~ea~drv~~G~erks~vise~ek~~~AYhEag 415 (596)
T COG0465 375 ----------KKEITMRDIEEAIDRVIAGPERKSRVISEAEKKITAYHEAG 415 (596)
T ss_pred ----------CeeEeccchHHHHHHHhcCcCcCCcccChhhhcchHHHHHH
Confidence 2569999999999998743322221 223445666654
No 30
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=1.5e-31 Score=304.02 Aligned_cols=245 Identities=39% Similarity=0.673 Sum_probs=217.0
Q ss_pred CCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 001746 722 GEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT 801 (1018)
Q Consensus 722 ~e~~vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~ 801 (1018)
..+.++|+||+|++++++.|.+++..|+.+++.|...+ +.+++++|||||||||||++|+++|++++.+|+.+.+.++.
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g-~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~ 193 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVG-IEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 193 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcC-CCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHH
Confidence 34678999999999999999999999999999999888 57889999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCc--chHHHHHHHHHHHhhhccccccCCCcEEEEEecCCC
Q 001746 802 SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAF--EHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP 879 (1018)
Q Consensus 802 s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~--~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p 879 (1018)
..+.++....++.+|..++...|+||||||+|.+...+.... ......+.+.+++..++++.. ..++.||+|||.+
T Consensus 194 ~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~--~~~v~vI~ttn~~ 271 (364)
T TIGR01242 194 RKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP--RGNVKVIAATNRP 271 (364)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC--CCCEEEEEecCCh
Confidence 999999999999999999999999999999999987654322 122334556677777777633 3479999999999
Q ss_pred CCCcHHHHh--ccCccccccCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 001746 880 FDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEE 957 (1018)
Q Consensus 880 ~~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeGfSgaDL~~L~~~Aa~~Airr~~~~~ 957 (1018)
+.+|+++++ ||++.|.|+.|+.++|.+||+.++....+..++++..++..|+||+|+||.++|.+|++.|+++.
T Consensus 272 ~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~---- 347 (364)
T TIGR01242 272 DILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREE---- 347 (364)
T ss_pred hhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC----
Confidence 999999998 99999999999999999999999988888778899999999999999999999999999998751
Q ss_pred HhcCCCCCCCCccCCCHHHHHHHHHhh
Q 001746 958 RKRGKNDAAPVLRPLKLEDFIQSKAKV 984 (1018)
Q Consensus 958 ~~~~~~~~~~~~rpLT~eDF~~Al~kv 984 (1018)
...|+.+||.+|+.++
T Consensus 348 -----------~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 348 -----------RDYVTMDDFIKAVEKV 363 (364)
T ss_pred -----------CCccCHHHHHHHHHHh
Confidence 1469999999999876
No 31
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.98 E-value=1.4e-31 Score=313.41 Aligned_cols=275 Identities=29% Similarity=0.534 Sum_probs=222.9
Q ss_pred CCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------
Q 001746 722 GEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN---------- 791 (1018)
Q Consensus 722 ~e~~vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~---------- 791 (1018)
..|.++|+||||++++++++++.|.+|+.++++|...+ +.+++++|||||||||||++|+++|++++.+
T Consensus 175 ~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~g-l~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~ 253 (512)
T TIGR03689 175 EVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYD-LKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSY 253 (512)
T ss_pred cCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhcc-CCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCcee
Confidence 34679999999999999999999999999999999888 6788999999999999999999999998644
Q ss_pred EEEEeccccchhhhhhHHHHHHHHHHHHHhc----CCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCC
Q 001746 792 FISITGSTLTSKWFGDAEKLTKALFSFASKL----APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKES 867 (1018)
Q Consensus 792 fi~Is~seL~s~~~ge~ek~I~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~ 867 (1018)
|+.+..+++.++|.|+.++.++.+|..|+.. .|+||||||+|.++..+.........++++++|+..|+++...
T Consensus 254 fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~-- 331 (512)
T TIGR03689 254 FLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL-- 331 (512)
T ss_pred EEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC--
Confidence 6677888999999999999999999998764 6999999999999988765444555678889999999998543
Q ss_pred CcEEEEEecCCCCCCcHHHHh--ccCccccccCCCHHHHHHHHHHHHhcc-CCC---------CcccHHHHHHH------
Q 001746 868 QKILILGATNRPFDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHE-SLE---------SGFQFNELANA------ 929 (1018)
Q Consensus 868 ~~VlVIaTTN~p~~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~-~l~---------~dvdl~~LA~~------ 929 (1018)
.+++||+|||+++.||++++| ||+..|+|+.|+.++|.+||+.++... .+. ...++..+++.
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~ 411 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLY 411 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 479999999999999999999 999999999999999999999998742 221 11223333222
Q ss_pred -----------------------ccCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHHhhCC
Q 001746 930 -----------------------TEGYSGSDLKNLCIAAAYRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQSKAKVGP 986 (1018)
Q Consensus 930 -----------------------TeGfSgaDL~~L~~~Aa~~Airr~~~~~~~~~~~~~~~~~rpLT~eDF~~Al~kv~P 986 (1018)
++.+||++|.++|..|...|+++.+... ...|+++|+..|+..--.
T Consensus 412 a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~-----------~~~~~~~~l~~a~~~e~~ 480 (512)
T TIGR03689 412 ATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGG-----------QVGLRIEHLLAAVLDEFR 480 (512)
T ss_pred hhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcC-----------CcCcCHHHHHHHHHHhhc
Confidence 4568899999999999999998876321 146999999999876542
Q ss_pred CcchhhhhHHHHHHHHHHhCCCCCc
Q 001746 987 SVAYDAASMNELRKWNEQYGEGGSR 1011 (1018)
Q Consensus 987 Svs~~~~~m~el~kW~diyG~~g~r 1011 (1018)
... +.+.-..-.+|..+-|..|.|
T Consensus 481 ~~~-~~~~~~~~~~w~~~~~~~~~~ 504 (512)
T TIGR03689 481 ESE-DLPNTTNPDDWARISGKKGER 504 (512)
T ss_pred ccc-cCCCCCCHHHHhhhhCCCCCc
Confidence 221 222222335799998887643
No 32
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.98 E-value=6.6e-32 Score=332.05 Aligned_cols=285 Identities=35% Similarity=0.616 Sum_probs=247.7
Q ss_pred CCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchh
Q 001746 724 IGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSK 803 (1018)
Q Consensus 724 ~~vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~s~ 803 (1018)
+.++|+||+|++++++.|++++.+|+.+|++|...+ +.+++++|||||||||||+||+++|++++.+|+.++++++.+.
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~g-i~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLG-IEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcC-CCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 568999999999999999999999999999999888 5788999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCc
Q 001746 804 WFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLD 883 (1018)
Q Consensus 804 ~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~LD 883 (1018)
+.|+.+..++.+|..|....|+||||||||.+.+.+... ..+...+++++|+..++++.. ..+++||++||.++.+|
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~-~~~~~~~~~~~Ll~~ld~l~~--~~~vivI~atn~~~~ld 328 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEV-TGEVEKRVVAQLLTLMDGLKG--RGRVIVIGATNRPDALD 328 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCC-cchHHHHHHHHHHHHhhcccc--CCCEEEEeecCChhhcC
Confidence 999999999999999999999999999999999877543 234557788999999998843 45799999999999999
Q ss_pred HHHHh--ccCccccccCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001746 884 DAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKRG 961 (1018)
Q Consensus 884 ~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeGfSgaDL~~L~~~Aa~~Airr~~~~~~~~~ 961 (1018)
+++++ ||+..+.++.|+.++|.+||+.+.....+..+.++..++..|+||+++||..+|..|++.++++.+.......
T Consensus 329 ~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~ 408 (733)
T TIGR01243 329 PALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINF 408 (733)
T ss_pred HHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 99998 9999999999999999999999998888878889999999999999999999999999999998765322110
Q ss_pred CC----CCCCCccCCCHHHHHHHHHhhCCCcchhhhhHHHHHHHHHHhCCCCCcc
Q 001746 962 KN----DAAPVLRPLKLEDFIQSKAKVGPSVAYDAASMNELRKWNEQYGEGGSRR 1012 (1018)
Q Consensus 962 ~~----~~~~~~rpLT~eDF~~Al~kv~PSvs~~~~~m~el~kW~diyG~~g~rk 1012 (1018)
.. ........++++||..|+..++|+...+.....+.+.|+|++|+...|+
T Consensus 409 ~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~~~k~ 463 (733)
T TIGR01243 409 EAEEIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEVKQ 463 (733)
T ss_pred ccccccchhcccccccHHHHHHHHhhccccccchhhccccccchhhcccHHHHHH
Confidence 00 0111224589999999999999998766555556789999999877764
No 33
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=2.7e-32 Score=294.02 Aligned_cols=243 Identities=34% Similarity=0.640 Sum_probs=217.9
Q ss_pred CcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhh
Q 001746 725 GVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKW 804 (1018)
Q Consensus 725 ~vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~s~~ 804 (1018)
+++|+.++|+.++..++++.|..|+.+|++|.+.+ ++||+++|||||||||||.+|+++|..+|++|+.+.++.+.+++
T Consensus 128 ~~s~~~~ggl~~qirelre~ielpl~np~lf~rvg-Ik~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ky 206 (388)
T KOG0651|consen 128 NISFENVGGLFYQIRELREVIELPLTNPELFLRVG-IKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKY 206 (388)
T ss_pred ccCHHHhCChHHHHHHHHhheEeeccCchhccccC-CCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhh
Confidence 57899999999999999999999999999999988 78999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCc--chHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCC
Q 001746 805 FGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAF--EHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDL 882 (1018)
Q Consensus 805 ~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~--~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~L 882 (1018)
.|++.+.|++.|..|+.+.|||||+||||++.+.+.... ......+++.+|+..|++... ..+|-+|+|||+|+.|
T Consensus 207 iGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~--l~rVk~ImatNrpdtL 284 (388)
T KOG0651|consen 207 IGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDT--LHRVKTIMATNRPDTL 284 (388)
T ss_pred cccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchh--cccccEEEecCCcccc
Confidence 999999999999999999999999999999998875432 233344555667777777743 4579999999999999
Q ss_pred cHHHHh--ccCccccccCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001746 883 DDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKR 960 (1018)
Q Consensus 883 D~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeGfSgaDL~~L~~~Aa~~Airr~~~~~~~~ 960 (1018)
+++|+| |+++.+++|+|+...|..|++.+.........+|.+.+.+.++||.|+|+++.|.+|.+.|+++.-
T Consensus 285 dpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~------ 358 (388)
T KOG0651|consen 285 DPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEER------ 358 (388)
T ss_pred chhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchhh------
Confidence 999999 999999999999999999999998888777889999999999999999999999999988887631
Q ss_pred CCCCCCCCccCCCHHHHHHHHHhhC
Q 001746 961 GKNDAAPVLRPLKLEDFIQSKAKVG 985 (1018)
Q Consensus 961 ~~~~~~~~~rpLT~eDF~~Al~kv~ 985 (1018)
..+-+|||..++.++.
T Consensus 359 ---------~~vl~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 359 ---------DEVLHEDFMKLVRKQA 374 (388)
T ss_pred ---------HHHhHHHHHHHHHHHH
Confidence 2367899999988764
No 34
>CHL00176 ftsH cell division protein; Validated
Probab=99.97 E-value=9.8e-31 Score=314.68 Aligned_cols=244 Identities=34% Similarity=0.589 Sum_probs=216.9
Q ss_pred CCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 001746 722 GEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT 801 (1018)
Q Consensus 722 ~e~~vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~ 801 (1018)
.+..++|+|++|++++++++.+++.. ++.++.|...+ ..++++|||+||||||||+||+++|.+++.+|+.++++++.
T Consensus 176 ~~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g-~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~ 253 (638)
T CHL00176 176 ADTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVG-AKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFV 253 (638)
T ss_pred cCCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhcc-CCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHH
Confidence 34568999999999999999998866 78888888777 56789999999999999999999999999999999999998
Q ss_pred hhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCC--cchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCC
Q 001746 802 SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGA--FEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP 879 (1018)
Q Consensus 802 s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~--~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p 879 (1018)
..+.+.....++.+|..|+..+||||||||||.+...+... ..+.....++++|+..++++.. +.+++||+|||++
T Consensus 254 ~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~--~~~ViVIaaTN~~ 331 (638)
T CHL00176 254 EMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG--NKGVIVIAATNRV 331 (638)
T ss_pred HHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC--CCCeeEEEecCch
Confidence 88888888899999999999999999999999998766432 2234456788899999998753 4579999999999
Q ss_pred CCCcHHHHh--ccCccccccCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 001746 880 FDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEE 957 (1018)
Q Consensus 880 ~~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeGfSgaDL~~L~~~Aa~~Airr~~~~~ 957 (1018)
+.+|++++| ||++.+.|++|+.++|.+||+.+++...+.+++++..+|..|.||+|+||.++|++|+..+.++.
T Consensus 332 ~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~---- 407 (638)
T CHL00176 332 DILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRK---- 407 (638)
T ss_pred HhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC----
Confidence 999999998 99999999999999999999999998887888999999999999999999999999998876541
Q ss_pred HhcCCCCCCCCccCCCHHHHHHHHHhh
Q 001746 958 RKRGKNDAAPVLRPLKLEDFIQSKAKV 984 (1018)
Q Consensus 958 ~~~~~~~~~~~~rpLT~eDF~~Al~kv 984 (1018)
...||++||..|+.++
T Consensus 408 -----------~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 408 -----------KATITMKEIDTAIDRV 423 (638)
T ss_pred -----------CCCcCHHHHHHHHHHH
Confidence 1469999999999987
No 35
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.6e-31 Score=293.42 Aligned_cols=243 Identities=19% Similarity=0.275 Sum_probs=191.1
Q ss_pred CcccccccccccccchhhHHHHHHhhhhcccCccchhhcccccCCCCCceeeccCCchhHHHHHHHHHHHHhhCCcEEee
Q 001746 175 EKINISWDTFPYYINENTKSLLVECVGSHLKHKKFTATFGARLTSSSGRILLRSVPGTELYRERLIRALARELQVPLLVL 254 (1018)
Q Consensus 175 ~~~~vsf~~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~~l~~~~~riLL~~~~gsE~yqe~L~kALA~~~~a~ll~~ 254 (1018)
+.-+|||++.+.+ +...+-|.+++-.+|+|+++|.+-+ + .+.++|||+|||| ..+++||||.|++-+|.|+=+
T Consensus 144 e~PdvtY~dIGGL--~~Qi~EirE~VELPL~~PElF~~~G--I-~PPKGVLLYGPPG--TGKTLLAkAVA~~T~AtFIrv 216 (406)
T COG1222 144 EKPDVTYEDIGGL--DEQIQEIREVVELPLKNPELFEELG--I-DPPKGVLLYGPPG--TGKTLLAKAVANQTDATFIRV 216 (406)
T ss_pred cCCCCChhhccCH--HHHHHHHHHHhcccccCHHHHHHcC--C-CCCCceEeeCCCC--CcHHHHHHHHHhccCceEEEe
Confidence 4568999999999 9999999999999999999863322 2 3667899999999 899999999999999999866
Q ss_pred ecCCCCCCCCCCCCCCccccccccCccccccccccccchhhhcccCccccCCCCchHHHHHHHHHHHhhcccCcHHHHHh
Q 001746 255 DSSVLAPYDFADDSSDCESDNYEETSESEVEDENDASNEEEWTSSNEARTDGSDSEADMQATAEAALKKLVPFNLEELEK 334 (1018)
Q Consensus 255 ds~~l~~~~f~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~~ 334 (1018)
=.| + + +.
T Consensus 217 vgS------------------------------------------------------------E-l-----------Vq- 223 (406)
T COG1222 217 VGS------------------------------------------------------------E-L-----------VQ- 223 (406)
T ss_pred ccH------------------------------------------------------------H-H-----------HH-
Confidence 442 0 0 00
Q ss_pred hhccccCCcccccccCCCCCccccccccCCCcEEEeCCCcccccccceeeeccccCCCCCCccccccCCCCCCCCcccEE
Q 001746 335 LSGELDSSSESSKSEAAEPSDTSKRLLKKGDRVKYIGPSVRVEADNRIILGKIMTSDGPKNAYTIIPDRALSSGQRGEVY 414 (1018)
Q Consensus 335 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~gdrvk~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~s~g~~g~v~ 414 (1018)
||+|-..
T Consensus 224 ---------------------------------KYiGEGa---------------------------------------- 230 (406)
T COG1222 224 ---------------------------------KYIGEGA---------------------------------------- 230 (406)
T ss_pred ---------------------------------HHhccch----------------------------------------
Confidence 4555221
Q ss_pred eecCCcceeeeccccCCCCCCCCCccccCCCCCCCcccccccccccccccchhhhHHHHHHHHHHHhhCCCeEEEEcCch
Q 001746 415 EVNGDRAAVILDISADNKGEGEKDDKVAEQPARPPVYWIDVKHIEHDLDTQAEDCYIAMEALCEVLHSTQPLIVYFPDSS 494 (1018)
Q Consensus 415 ~~n~~k~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~e~~~~~~p~Iiff~did 494 (1018)
-+|..||+.|+...|+||||||||
T Consensus 231 --------------------------------------------------------RlVRelF~lArekaPsIIFiDEID 254 (406)
T COG1222 231 --------------------------------------------------------RLVRELFELAREKAPSIIFIDEID 254 (406)
T ss_pred --------------------------------------------------------HHHHHHHHHHhhcCCeEEEEechh
Confidence 289999999999999999999999
Q ss_pred hh-hhh-ccCcchHHHHHHHHHHHHhcCC-----CCEEEEeeccCCCCCccccccccccccccccccCCCCchhhhhccc
Q 001746 495 LW-LSR-AVPRCNRKEFVRKVEEMFDQLS-----GPVVLICGQNKNETGPKEKEKFTMILPNFGRLAKLPLPLQRLTEGL 567 (1018)
Q Consensus 495 ~~-~~~-s~~~~~~~~~~s~~~~~l~~l~-----g~v~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LvIGm 567 (1018)
-. -.| .-+.+--.++--|+.+||+.|| |+|= ||.+
T Consensus 255 AIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvK--------------------------------------VI~A 296 (406)
T COG1222 255 AIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVK--------------------------------------VIMA 296 (406)
T ss_pred hhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeE--------------------------------------EEEe
Confidence 86 111 1122233466667777777777 4444 4578
Q ss_pred ccCCCcchHHHHh--ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhcCCcccccccccchhhhh
Q 001746 568 KATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLEDHELSCTDLLHVNTDGVILT 645 (1018)
Q Consensus 568 TnR~d~iD~aL~r--rFe~~ieI~LPdeegRl~Il~iht~~~~~~~~~~~~v~~l~~~l~t~~~~gaDL~~Lct~a~lls 645 (1018)
|||+|.+|+||+| |||+.|||||||++||.+||+|||.+|.- ..+.|++.++. .+.|++||||.++||+|-+++
T Consensus 297 TNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l--~~dvd~e~la~--~~~g~sGAdlkaictEAGm~A 372 (406)
T COG1222 297 TNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNL--ADDVDLELLAR--LTEGFSGADLKAICTEAGMFA 372 (406)
T ss_pred cCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccC--ccCcCHHHHHH--hcCCCchHHHHHHHHHHhHHH
Confidence 9999999999999 99999999999999999999999877752 12344556655 888999999999999998765
Q ss_pred HhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhhh
Q 001746 646 KQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQ 691 (1018)
Q Consensus 646 ~~~~~~~V~~a~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~ 691 (1018)
+...+..|+++||+.|++++...
T Consensus 373 -----------------------iR~~R~~Vt~~DF~~Av~KV~~~ 395 (406)
T COG1222 373 -----------------------IRERRDEVTMEDFLKAVEKVVKK 395 (406)
T ss_pred -----------------------HHhccCeecHHHHHHHHHHHHhc
Confidence 23456679999999999998754
No 36
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.97 E-value=7.9e-30 Score=308.88 Aligned_cols=250 Identities=34% Similarity=0.562 Sum_probs=220.2
Q ss_pred CCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 001746 722 GEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT 801 (1018)
Q Consensus 722 ~e~~vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~ 801 (1018)
.....+|+|+.|.+..++.+.+.+.+ +..+..|...+ ...+++|||+||||||||++|+++|.+++.+|+.++++++.
T Consensus 145 ~~~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~-~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~ 222 (644)
T PRK10733 145 DQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLG-GKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV 222 (644)
T ss_pred hhhhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcC-CCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhH
Confidence 44567899999999999999998877 56677676555 45678999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCC--cchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCC
Q 001746 802 SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGA--FEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP 879 (1018)
Q Consensus 802 s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~--~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p 879 (1018)
..+.+.....++.+|..|+..+|+||||||||.+...+... ..+.....++++|+..|+++.. +..++||+|||+|
T Consensus 223 ~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~--~~~vivIaaTN~p 300 (644)
T PRK10733 223 EMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG--NEGIIVIAATNRP 300 (644)
T ss_pred HhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccC--CCCeeEEEecCCh
Confidence 99999999999999999999999999999999998877542 2344556789999999999854 4579999999999
Q ss_pred CCCcHHHHh--ccCccccccCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 001746 880 FDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEE 957 (1018)
Q Consensus 880 ~~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeGfSgaDL~~L~~~Aa~~Airr~~~~~ 957 (1018)
+.||++++| ||++.+.|++|+.++|.+||+.++...++..++++..+|+.|.||||+||.++|++|+..|+++.
T Consensus 301 ~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~---- 376 (644)
T PRK10733 301 DVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN---- 376 (644)
T ss_pred hhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcC----
Confidence 999999998 99999999999999999999999999888889999999999999999999999999999887641
Q ss_pred HhcCCCCCCCCccCCCHHHHHHHHHhhCCCcch
Q 001746 958 RKRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAY 990 (1018)
Q Consensus 958 ~~~~~~~~~~~~rpLT~eDF~~Al~kv~PSvs~ 990 (1018)
...|+++||.+|+.++.+....
T Consensus 377 -----------~~~i~~~d~~~a~~~v~~g~~~ 398 (644)
T PRK10733 377 -----------KRVVSMVEFEKAKDKIMMGAER 398 (644)
T ss_pred -----------CCcccHHHHHHHHHHHhccccc
Confidence 1469999999999988776543
No 37
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1e-29 Score=309.81 Aligned_cols=264 Identities=36% Similarity=0.594 Sum_probs=224.1
Q ss_pred CCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEec
Q 001746 723 EIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA-----GANFISITG 797 (1018)
Q Consensus 723 e~~vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~el-----g~~fi~Is~ 797 (1018)
+..+.|++|||++.++.+|+|+|..|+.+|+.|...+ +.||+|||+|||||||||..|+|+|..+ .+.|+.-++
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~-itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkg 337 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFN-ITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKG 337 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcc-cCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcC
Confidence 3468999999999999999999999999999999988 7899999999999999999999999988 456788889
Q ss_pred cccchhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecC
Q 001746 798 STLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATN 877 (1018)
Q Consensus 798 seL~s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN 877 (1018)
++..++|+|+.+..++.+|++|++.+|+|||+||||-|++.|.... ......++.+||.+|+|+.+. ..|+||||||
T Consensus 338 aD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskq-Eqih~SIvSTLLaLmdGldsR--gqVvvigATn 414 (1080)
T KOG0732|consen 338 ADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQ-EQIHASIVSTLLALMDGLDSR--GQVVVIGATN 414 (1080)
T ss_pred chhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchH-HHhhhhHHHHHHHhccCCCCC--CceEEEcccC
Confidence 9999999999999999999999999999999999999998875432 334467889999999999654 5799999999
Q ss_pred CCCCCcHHHHh--ccCccccccCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHH
Q 001746 878 RPFDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELL 954 (1018)
Q Consensus 878 ~p~~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeGfSgaDL~~L~~~Aa~~Airr~~ 954 (1018)
+|+.+|++++| ||++.++|++|+.+.|.+|+..+..+..-. ...-+..||+.|.||.|+||+.||.+|++.++++..
T Consensus 415 Rpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~ 494 (1080)
T KOG0732|consen 415 RPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSF 494 (1080)
T ss_pred CccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhcccc
Confidence 99999999999 999999999999999999999988765522 334478899999999999999999999999998742
Q ss_pred HHHH-hcCCCCCCCCccCCCHHHHHHHHHhhCCCcch
Q 001746 955 EEER-KRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAY 990 (1018)
Q Consensus 955 ~~~~-~~~~~~~~~~~rpLT~eDF~~Al~kv~PSvs~ 990 (1018)
-..- ....-........+...||..|+.++.|+...
T Consensus 495 Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R 531 (1080)
T KOG0732|consen 495 PQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRR 531 (1080)
T ss_pred CeeecccccccccchhhhhhhHhhhhhhhccCCCCCc
Confidence 1100 00000011222348999999999999988765
No 38
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.5e-29 Score=277.68 Aligned_cols=277 Identities=18% Similarity=0.227 Sum_probs=209.7
Q ss_pred HHHHHHHhhcccCCCcccccccccccccchhhHHHHHHhhhhcccCccchhhcccccCCCCCceeeccCCchhHHHHHHH
Q 001746 161 ERFKNEFSRRIVPWEKINISWDTFPYYINENTKSLLVECVGSHLKHKKFTATFGARLTSSSGRILLRSVPGTELYRERLI 240 (1018)
Q Consensus 161 ~~~~~~~~~~v~~~~~~~vsf~~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~~l~~~~~riLL~~~~gsE~yqe~L~ 240 (1018)
..||.-+...||.|.+|.|+|++.... |.+|+.|.+.+..+|+++++++ ..+|..+++.|||+|||| +.++|||
T Consensus 71 ne~E~~i~s~~v~p~~I~v~f~DIggL--e~v~~~L~e~VilPlr~pelF~--~g~Ll~p~kGiLL~GPpG--~GKTmlA 144 (386)
T KOG0737|consen 71 NEYEKRIASDVVPPSEIGVSFDDIGGL--EEVKDALQELVILPLRRPELFA--KGKLLRPPKGILLYGPPG--TGKTMLA 144 (386)
T ss_pred hHHHHHhhhcccchhhceeehhhccch--HHHHHHHHHHHhhcccchhhhc--ccccccCCccceecCCCC--chHHHHH
Confidence 458999999999999999999999999 9999999999999999999974 457999999999999999 9999999
Q ss_pred HHHHHhhCCcEEeeecCCCCCCCCCCCCCCccccccccCccccccccccccchhhhcccCccccCCCCchHHHHHHHHHH
Q 001746 241 RALARELQVPLLVLDSSVLAPYDFADDSSDCESDNYEETSESEVEDENDASNEEEWTSSNEARTDGSDSEADMQATAEAA 320 (1018)
Q Consensus 241 kALA~~~~a~ll~~ds~~l~~~~f~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 320 (1018)
||+|++.||.++.|+.+.|.+.|||+.
T Consensus 145 KA~Akeaga~fInv~~s~lt~KWfgE~----------------------------------------------------- 171 (386)
T KOG0737|consen 145 KAIAKEAGANFINVSVSNLTSKWFGEA----------------------------------------------------- 171 (386)
T ss_pred HHHHHHcCCCcceeeccccchhhHHHH-----------------------------------------------------
Confidence 999999999999999986654322110
Q ss_pred HhhcccCcHHHHHhhhccccCCcccccccCCCCCccccccccCCCcEEEeCCCcccccccceeeeccccCCCCCCccccc
Q 001746 321 LKKLVPFNLEELEKLSGELDSSSESSKSEAAEPSDTSKRLLKKGDRVKYIGPSVRVEADNRIILGKIMTSDGPKNAYTII 400 (1018)
Q Consensus 321 ~~~~~p~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~gdrvk~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (1018)
.
T Consensus 172 -----------------------------------------------------e-------------------------- 172 (386)
T KOG0737|consen 172 -----------------------------------------------------Q-------------------------- 172 (386)
T ss_pred -----------------------------------------------------H--------------------------
Confidence 0
Q ss_pred cCCCCCCCCcccEEeecCCcceeeeccccCCCCCCCCCccccCCCCCCCcccccccccccccccchhhhHHHHHHHHHHH
Q 001746 401 PDRALSSGQRGEVYEVNGDRAAVILDISADNKGEGEKDDKVAEQPARPPVYWIDVKHIEHDLDTQAEDCYIAMEALCEVL 480 (1018)
Q Consensus 401 ~~r~~s~g~~g~v~~~n~~k~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~e~~ 480 (1018)
-++.++|-.|
T Consensus 173 ----------------------------------------------------------------------Klv~AvFslA 182 (386)
T KOG0737|consen 173 ----------------------------------------------------------------------KLVKAVFSLA 182 (386)
T ss_pred ----------------------------------------------------------------------HHHHHHHhhh
Confidence 1677888889
Q ss_pred hhCCCeEEEEcCchhhhhhccCcchHHHH---HHHHHHHHhcCC----CCEEEEeeccCCCCCccccccccccccccccc
Q 001746 481 HSTQPLIVYFPDSSLWLSRAVPRCNRKEF---VRKVEEMFDQLS----GPVVLICGQNKNETGPKEKEKFTMILPNFGRL 553 (1018)
Q Consensus 481 ~~~~p~Iiff~did~~~~~s~~~~~~~~~---~s~~~~~l~~l~----g~v~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (1018)
.+.||+|||+||||..++.- +.+.|+-. -..|-.+-||+. -+|+|
T Consensus 183 sKl~P~iIFIDEvds~L~~R-~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlV--------------------------- 234 (386)
T KOG0737|consen 183 SKLQPSIIFIDEVDSFLGQR-RSTDHEATAMMKNEFMALWDGLSSKDSERVLV--------------------------- 234 (386)
T ss_pred hhcCcceeehhhHHHHHhhc-ccchHHHHHHHHHHHHHHhccccCCCCceEEE---------------------------
Confidence 99999999999999975442 44555433 233334445553 23444
Q ss_pred cCCCCchhhhhcccccCCCcchHHHHhccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhcCCccc
Q 001746 554 AKLPLPLQRLTEGLKATKRSDDNEIYNLFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLEDHELSCTD 633 (1018)
Q Consensus 554 ~~~~~~~~~LvIGmTnR~d~iD~aL~rrFe~~ieI~LPdeegRl~Il~iht~~~~~~~~~~~~v~~l~~~l~t~~~~gaD 633 (1018)
.|+||||-.+|+|+.|||+..|.|++|+.++|.+||+.-+++ +....+-|+++++. .|+||+|.|
T Consensus 235 -----------lgATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~--e~~e~~vD~~~iA~--~t~GySGSD 299 (386)
T KOG0737|consen 235 -----------LGATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKK--EKLEDDVDLDEIAQ--MTEGYSGSD 299 (386)
T ss_pred -----------EeCCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcc--cccCcccCHHHHHH--hcCCCcHHH
Confidence 489999999999999999999999999999999999987643 33335555666666 899999999
Q ss_pred ccccccchhhhhHhhhhhhHhhc-----ccccccccCCC-C--ccCCceeeCHHHHHHHHHHhhhh
Q 001746 634 LLHVNTDGVILTKQRAEKVVGWA-----KNHYLSSCSFP-S--VKGQRLHLPRESLEIAILRLKEQ 691 (1018)
Q Consensus 634 L~~Lct~a~lls~~~~~~~V~~a-----~~~~l~~~~~~-~--v~~~kv~V~~~df~~Al~~l~p~ 691 (1018)
|..||+.|++.. +..++..- ...++...... . ..-..--+.++||..|+..+-++
T Consensus 300 LkelC~~Aa~~~---ire~~~~~~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~ 362 (386)
T KOG0737|consen 300 LKELCRLAALRP---IRELLVSETGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSAS 362 (386)
T ss_pred HHHHHHHHhHhH---HHHHHHhcccchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhH
Confidence 999999998865 33333322 11111110000 0 11113456788999888877665
No 39
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.8e-29 Score=285.75 Aligned_cols=264 Identities=28% Similarity=0.463 Sum_probs=218.8
Q ss_pred Cccccc--ccChHHHHHH-HHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-cEEEEecccc
Q 001746 725 GVRFDD--IGALEDVKKA-LNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA-NFISITGSTL 800 (1018)
Q Consensus 725 ~vtfdD--IgGle~vk~~-L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~-~fi~Is~seL 800 (1018)
.-.|++ |||++.--.. .+.......--|+.-.+.| ....+|||||||||||||.+||.|.+-+++ +--.++++++
T Consensus 215 df~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lG-i~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeI 293 (744)
T KOG0741|consen 215 DFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLG-IKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEI 293 (744)
T ss_pred CCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcC-ccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHH
Confidence 355665 6888866544 4455555566777777888 577899999999999999999999999965 3445789999
Q ss_pred chhhhhhHHHHHHHHHHHHHhc--------CCeEEEecchhhhhhccCCCcc-hHHHHHHHHHHHhhhccccccCCCcEE
Q 001746 801 TSKWFGDAEKLTKALFSFASKL--------APVIIFVDEVDSLLGARGGAFE-HEATRRMRNEFMSAWDGLRSKESQKIL 871 (1018)
Q Consensus 801 ~s~~~ge~ek~I~~lF~~A~k~--------~PsIIfIDEID~L~~~r~~~~~-~e~~~~il~~LL~~Ldgl~~~~~~~Vl 871 (1018)
+++|+|++|.+++++|.+|..- .-.||++||||+++..|++..+ ..+...++|+||..+||...- ++++
T Consensus 294 L~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqL--NNIL 371 (744)
T KOG0741|consen 294 LNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQL--NNIL 371 (744)
T ss_pred HHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhh--hcEE
Confidence 9999999999999999999542 2469999999999999987544 567789999999999998654 4799
Q ss_pred EEEecCCCCCCcHHHHh--ccCccccccCCCHHHHHHHHHHHHhcc----CCCCcccHHHHHHHccCCCHHHHHHHHHHH
Q 001746 872 ILGATNRPFDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHE----SLESGFQFNELANATEGYSGSDLKNLCIAA 945 (1018)
Q Consensus 872 VIaTTN~p~~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~----~l~~dvdl~~LA~~TeGfSgaDL~~L~~~A 945 (1018)
|||-||+.+.+|+||+| ||...+++.+||+..|.+||+.+.+.. .+..++|+++||..|..|||++|..|++.|
T Consensus 372 VIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA 451 (744)
T KOG0741|consen 372 VIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSA 451 (744)
T ss_pred EEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHH
Confidence 99999999999999999 999999999999999999999988743 356899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHHhhCCCcchh
Q 001746 946 AYRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAYD 991 (1018)
Q Consensus 946 a~~Airr~~~~~~~~~~~~~~~~~rpLT~eDF~~Al~kv~PSvs~~ 991 (1018)
.-.|+-|.++...+............|+++||..|+.+++|.+-..
T Consensus 452 ~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~s 497 (744)
T KOG0741|consen 452 QSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAFGIS 497 (744)
T ss_pred HHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcccCCC
Confidence 9999998876542222222222335799999999999999998643
No 40
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.96 E-value=7.2e-29 Score=312.10 Aligned_cols=210 Identities=20% Similarity=0.230 Sum_probs=173.4
Q ss_pred ccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhh-------------------------------
Q 001746 756 SRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKW------------------------------- 804 (1018)
Q Consensus 756 ~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~s~~------------------------------- 804 (1018)
.+.| ..|++||||+||||||||+||+|+|.++++||+.+++++++.++
T Consensus 1623 lrLG-l~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~ 1701 (2281)
T CHL00206 1623 LRLA-LSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTEL 1701 (2281)
T ss_pred HHcC-CCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhh
Confidence 3455 57899999999999999999999999999999999999988643
Q ss_pred ----------hhhH--HHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccc-cCCCcEE
Q 001746 805 ----------FGDA--EKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRS-KESQKIL 871 (1018)
Q Consensus 805 ----------~ge~--ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~-~~~~~Vl 871 (1018)
.+.. ...++.+|+.|++.+||||||||||.+..... ....+++|+..|++... ....+|+
T Consensus 1702 ~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds-------~~ltL~qLLneLDg~~~~~s~~~VI 1774 (2281)
T CHL00206 1702 LTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES-------NYLSLGLLVNSLSRDCERCSTRNIL 1774 (2281)
T ss_pred hhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc-------ceehHHHHHHHhccccccCCCCCEE
Confidence 1122 23489999999999999999999999975421 11247888899987642 2346799
Q ss_pred EEEecCCCCCCcHHHHh--ccCccccccCCCHHHHHHHHHHHH--hccCCCC-cccHHHHHHHccCCCHHHHHHHHHHHH
Q 001746 872 ILGATNRPFDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFL--AHESLES-GFQFNELANATEGYSGSDLKNLCIAAA 946 (1018)
Q Consensus 872 VIaTTN~p~~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~L--~~~~l~~-dvdl~~LA~~TeGfSgaDL~~L~~~Aa 946 (1018)
||||||+|+.|||||+| ||++.|.|+.|+..+|.+++..++ ++..+.. .+++..+|..|.||+|+||.+||++|+
T Consensus 1775 VIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAa 1854 (2281)
T CHL00206 1775 VIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEAL 1854 (2281)
T ss_pred EEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 99999999999999999 999999999999999999988654 3344443 368999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHHhhCCCc
Q 001746 947 YRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQSKAKVGPSV 988 (1018)
Q Consensus 947 ~~Airr~~~~~~~~~~~~~~~~~rpLT~eDF~~Al~kv~PSv 988 (1018)
..|+++- ...|+++||..|+.++..-.
T Consensus 1855 liAirq~---------------ks~Id~~~I~~Al~Rq~~g~ 1881 (2281)
T CHL00206 1855 SISITQK---------------KSIIDTNTIRSALHRQTWDL 1881 (2281)
T ss_pred HHHHHcC---------------CCccCHHHHHHHHHHHHhhh
Confidence 9998862 13589999999998876543
No 41
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.95 E-value=3.7e-27 Score=262.98 Aligned_cols=189 Identities=17% Similarity=0.249 Sum_probs=160.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhhhhHHHHHHHHHHHHHh-----cCCeEEEecchhhh
Q 001746 761 LRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASK-----LAPVIIFVDEVDSL 835 (1018)
Q Consensus 761 ~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~s~~~ge~ek~I~~lF~~A~k-----~~PsIIfIDEID~L 835 (1018)
+++|++++||||||||||++|++||+++|++|+.+++++|.++|.|++++.++++|..|.. .+||||||||||.+
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~ 224 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAG 224 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhc
Confidence 6889999999999999999999999999999999999999999999999999999999975 46999999999999
Q ss_pred hhccCCCcchHHHHHHH-HHHHhhhcccc----------ccCCCcEEEEEecCCCCCCcHHHHh--ccCccccccCCCHH
Q 001746 836 LGARGGAFEHEATRRMR-NEFMSAWDGLR----------SKESQKILILGATNRPFDLDDAVIR--RLPRRIYVDLPDAE 902 (1018)
Q Consensus 836 ~~~r~~~~~~e~~~~il-~~LL~~Ldgl~----------~~~~~~VlVIaTTN~p~~LD~aLlr--RFd~~I~V~lPd~e 902 (1018)
++.+... .....++++ .+||+++|+.. .....+|+||+|||+|+.||++|+| ||++.+ ..|+.+
T Consensus 225 ~g~r~~~-~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e 301 (413)
T PLN00020 225 AGRFGTT-QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTRE 301 (413)
T ss_pred CCCCCCC-CcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHH
Confidence 9988643 344444554 79999988642 1235679999999999999999999 999864 589999
Q ss_pred HHHHHHHHHHhccCCCCcccHHHHHHHccC----CCHHHHHHHHHHHHHHHHHHH
Q 001746 903 NRMKILRIFLAHESLESGFQFNELANATEG----YSGSDLKNLCIAAAYRPVQEL 953 (1018)
Q Consensus 903 eR~eILk~~L~~~~l~~dvdl~~LA~~TeG----fSgaDL~~L~~~Aa~~Airr~ 953 (1018)
+|.+||+.+++..++. ..++..|+..+.| |.|+--..+..++....+.++
T Consensus 302 ~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i~~~ 355 (413)
T PLN00020 302 DRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWIAEV 355 (413)
T ss_pred HHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHHHh
Confidence 9999999999988775 5788888888876 566666666666666666554
No 42
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=4.6e-25 Score=243.89 Aligned_cols=269 Identities=17% Similarity=0.224 Sum_probs=200.5
Q ss_pred HHHHHhhcccCCCcccccccccccccchhhHHHHHHhhhhcccCccchhhcccccCCCCCceeeccCCchhHHHHHHHHH
Q 001746 163 FKNEFSRRIVPWEKINISWDTFPYYINENTKSLLVECVGSHLKHKKFTATFGARLTSSSGRILLRSVPGTELYRERLIRA 242 (1018)
Q Consensus 163 ~~~~~~~~v~~~~~~~vsf~~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~~l~~~~~riLL~~~~gsE~yqe~L~kA 242 (1018)
+-+.|.+.|+. ++.+|.||++-.. +..|.+|-+|+..++.-++|| ..+-.+=+.|||.|||| ..++|||||
T Consensus 194 Lve~lerdIl~-~np~ikW~DIagl--~~AK~lL~EAVvlPi~mPe~F----~GirrPWkgvLm~GPPG--TGKTlLAKA 264 (491)
T KOG0738|consen 194 LVEALERDILQ-RNPNIKWDDIAGL--HEAKKLLKEAVVLPIWMPEFF----KGIRRPWKGVLMVGPPG--TGKTLLAKA 264 (491)
T ss_pred HHHHHHHHHhc-cCCCcChHhhcch--HHHHHHHHHHHhhhhhhHHHH----hhcccccceeeeeCCCC--CcHHHHHHH
Confidence 45555555555 4667999999999 999999999999999988876 56888999999999999 899999999
Q ss_pred HHHhhCCcEEeeecCCCCCCCCCCCCCCccccccccCccccccccccccchhhhcccCccccCCCCchHHHHHHHHHHHh
Q 001746 243 LARELQVPLLVLDSSVLAPYDFADDSSDCESDNYEETSESEVEDENDASNEEEWTSSNEARTDGSDSEADMQATAEAALK 322 (1018)
Q Consensus 243 LA~~~~a~ll~~ds~~l~~~~f~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 322 (1018)
+|.+.|..+..|-|++|..
T Consensus 265 vATEc~tTFFNVSsstltS------------------------------------------------------------- 283 (491)
T KOG0738|consen 265 VATECGTTFFNVSSSTLTS------------------------------------------------------------- 283 (491)
T ss_pred HHHhhcCeEEEechhhhhh-------------------------------------------------------------
Confidence 9999999998888764432
Q ss_pred hcccCcHHHHHhhhccccCCcccccccCCCCCccccccccCCCcEEEeCCCcccccccceeeeccccCCCCCCccccccC
Q 001746 323 KLVPFNLEELEKLSGELDSSSESSKSEAAEPSDTSKRLLKKGDRVKYIGPSVRVEADNRIILGKIMTSDGPKNAYTIIPD 402 (1018)
Q Consensus 323 ~~~p~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~gdrvk~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1018)
||-|.|-
T Consensus 284 ---------------------------------------------KwRGeSE---------------------------- 290 (491)
T KOG0738|consen 284 ---------------------------------------------KWRGESE---------------------------- 290 (491)
T ss_pred ---------------------------------------------hhccchH----------------------------
Confidence 1212111
Q ss_pred CCCCCCCcccEEeecCCcceeeeccccCCCCCCCCCccccCCCCCCCcccccccccccccccchhhhHHHHHHHHHHHhh
Q 001746 403 RALSSGQRGEVYEVNGDRAAVILDISADNKGEGEKDDKVAEQPARPPVYWIDVKHIEHDLDTQAEDCYIAMEALCEVLHS 482 (1018)
Q Consensus 403 r~~s~g~~g~v~~~n~~k~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~e~~~~ 482 (1018)
-+|.-|||-|+.
T Consensus 291 --------------------------------------------------------------------KlvRlLFemARf 302 (491)
T KOG0738|consen 291 --------------------------------------------------------------------KLVRLLFEMARF 302 (491)
T ss_pred --------------------------------------------------------------------HHHHHHHHHHHH
Confidence 178899999999
Q ss_pred CCCeEEEEcCchhhhhhccCcchHH---HHHHHHHHHHhcCCC-----CEEEEeeccCCCCCcccccccccccccccccc
Q 001746 483 TQPLIVYFPDSSLWLSRAVPRCNRK---EFVRKVEEMFDQLSG-----PVVLICGQNKNETGPKEKEKFTMILPNFGRLA 554 (1018)
Q Consensus 483 ~~p~Iiff~did~~~~~s~~~~~~~---~~~s~~~~~l~~l~g-----~v~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (1018)
.-|++|||||||-+..+--..+.|+ ++-+.|+-.||++.| ++|+
T Consensus 303 yAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~Vm---------------------------- 354 (491)
T KOG0738|consen 303 YAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVM---------------------------- 354 (491)
T ss_pred hCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEE----------------------------
Confidence 9999999999999865533445554 567888888888863 2222
Q ss_pred CCCCchhhhhcccccCCCcchHHHHhccccEEEEcCCChHHHHHHHHHHHHHHhhhhh-hhhhHHHHHHHHhhhcCCccc
Q 001746 555 KLPLPLQRLTEGLKATKRSDDNEIYNLFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVI-YRSNLNELHKVLEDHELSCTD 633 (1018)
Q Consensus 555 ~~~~~~~~LvIGmTnR~d~iD~aL~rrFe~~ieI~LPdeegRl~Il~iht~~~~~~~~-~~~~v~~l~~~l~t~~~~gaD 633 (1018)
|..+||=|-.|||||+||||..|||||||.++|...++|-+. .... ..-+++.|++ ++.||+|+|
T Consensus 355 ---------VLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~---~~~~~~~~~~~~lae--~~eGySGaD 420 (491)
T KOG0738|consen 355 ---------VLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLR---SVELDDPVNLEDLAE--RSEGYSGAD 420 (491)
T ss_pred ---------EEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhc---cccCCCCccHHHHHH--HhcCCChHH
Confidence 345666677899999999999999999999999999999853 2222 2234555555 888999999
Q ss_pred ccccccchhhhhHhhhhhhHhhcccccccccCC-CCccCCceeeCHHHHHHHHHHhhhh
Q 001746 634 LLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSF-PSVKGQRLHLPRESLEIAILRLKEQ 691 (1018)
Q Consensus 634 L~~Lct~a~lls~~~~~~~V~~a~~~~l~~~~~-~~v~~~kv~V~~~df~~Al~~l~p~ 691 (1018)
|..+|.+|.+....+ .........+. +..+.-+.-|+..||+.|+.++.|+
T Consensus 421 I~nvCreAsm~~mRR-------~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pS 472 (491)
T KOG0738|consen 421 ITNVCREASMMAMRR-------KIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPS 472 (491)
T ss_pred HHHHHHHHHHHHHHH-------HHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcC
Confidence 999999998866332 11111111100 0011112448889999999999987
No 43
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.9e-23 Score=246.65 Aligned_cols=260 Identities=18% Similarity=0.252 Sum_probs=201.7
Q ss_pred HHHHHHHhhc----ccCCCcccccccccccccchhhHHHHHHhhhhcccCccchhhcccccCCCCCceeeccCCchhHHH
Q 001746 161 ERFKNEFSRR----IVPWEKINISWDTFPYYINENTKSLLVECVGSHLKHKKFTATFGARLTSSSGRILLRSVPGTELYR 236 (1018)
Q Consensus 161 ~~~~~~~~~~----v~~~~~~~vsf~~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~~l~~~~~riLL~~~~gsE~yq 236 (1018)
+.+++.|... .+.-.+-.|+|++...+ +..|..|.+++-..+++++.+ ..-.-...++|||+|||| ..+
T Consensus 217 ~~~~~~l~~~~~~~~~~~~~~~v~~~diggl--~~~k~~l~e~v~~~~~~~e~~---~~~~~~~~~giLl~GpPG--tGK 289 (494)
T COG0464 217 DDFEEALKKVLPSRGVLFEDEDVTLDDIGGL--EEAKEELKEAIETPLKRPELF---RKLGLRPPKGVLLYGPPG--TGK 289 (494)
T ss_pred HHHHHHHHhcCcccccccCCCCcceehhhcH--HHHHHHHHHHHHhHhhChHHH---HhcCCCCCCeeEEECCCC--CCH
Confidence 4455555553 44457778999999998 999999999999999999974 232334555999999999 899
Q ss_pred HHHHHHHHHhhCCcEEeeecCCCCCCCCCCCCCCccccccccCccccccccccccchhhhcccCccccCCCCchHHHHHH
Q 001746 237 ERLIRALARELQVPLLVLDSSVLAPYDFADDSSDCESDNYEETSESEVEDENDASNEEEWTSSNEARTDGSDSEADMQAT 316 (1018)
Q Consensus 237 e~L~kALA~~~~a~ll~~ds~~l~~~~f~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 316 (1018)
++||||+|++.+++++.++.+.|.+
T Consensus 290 T~lAkava~~~~~~fi~v~~~~l~s------------------------------------------------------- 314 (494)
T COG0464 290 TLLAKAVALESRSRFISVKGSELLS------------------------------------------------------- 314 (494)
T ss_pred HHHHHHHHhhCCCeEEEeeCHHHhc-------------------------------------------------------
Confidence 9999999999999999999852221
Q ss_pred HHHHHhhcccCcHHHHHhhhccccCCcccccccCCCCCccccccccCCCcEEEeCCCcccccccceeeeccccCCCCCCc
Q 001746 317 AEAALKKLVPFNLEELEKLSGELDSSSESSKSEAAEPSDTSKRLLKKGDRVKYIGPSVRVEADNRIILGKIMTSDGPKNA 396 (1018)
Q Consensus 317 ~~~~~~~~~p~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~gdrvk~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (1018)
||+|-+.
T Consensus 315 ---------------------------------------------------k~vGese---------------------- 321 (494)
T COG0464 315 ---------------------------------------------------KWVGESE---------------------- 321 (494)
T ss_pred ---------------------------------------------------cccchHH----------------------
Confidence 2333221
Q ss_pred cccccCCCCCCCCcccEEeecCCcceeeeccccCCCCCCCCCccccCCCCCCCcccccccccccccccchhhhHHHHHHH
Q 001746 397 YTIIPDRALSSGQRGEVYEVNGDRAAVILDISADNKGEGEKDDKVAEQPARPPVYWIDVKHIEHDLDTQAEDCYIAMEAL 476 (1018)
Q Consensus 397 ~~~~~~r~~s~g~~g~v~~~n~~k~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L 476 (1018)
-.|..+
T Consensus 322 --------------------------------------------------------------------------k~ir~~ 327 (494)
T COG0464 322 --------------------------------------------------------------------------KNIREL 327 (494)
T ss_pred --------------------------------------------------------------------------HHHHHH
Confidence 178899
Q ss_pred HHHHhhCCCeEEEEcCchhhhhh-ccCcchH-HHHHHHHHHHHhcCC--CCEEEEeeccCCCCCcccccccccccccccc
Q 001746 477 CEVLHSTQPLIVYFPDSSLWLSR-AVPRCNR-KEFVRKVEEMFDQLS--GPVVLICGQNKNETGPKEKEKFTMILPNFGR 552 (1018)
Q Consensus 477 ~e~~~~~~p~Iiff~did~~~~~-s~~~~~~-~~~~s~~~~~l~~l~--g~v~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (1018)
|+.|++.+|+||||||||.|... +-...-. .+++..|+..|+++. ..|+||
T Consensus 328 F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi------------------------- 382 (494)
T COG0464 328 FEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVI------------------------- 382 (494)
T ss_pred HHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEE-------------------------
Confidence 99999999999999999998433 2122111 478999999998886 344444
Q ss_pred ccCCCCchhhhhcccccCCCcchHHHHh--ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhcCC
Q 001746 553 LAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLEDHELS 630 (1018)
Q Consensus 553 ~~~~~~~~~~LvIGmTnR~d~iD~aL~r--rFe~~ieI~LPdeegRl~Il~iht~~~~~~~~~~~~v~~l~~~l~t~~~~ 630 (1018)
|+||||+.||+|++| ||+..|+|++||.++|++||++|+.........+.+.+.++. .|.||+
T Consensus 383 -------------~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~--~t~~~s 447 (494)
T COG0464 383 -------------AATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAE--ITEGYS 447 (494)
T ss_pred -------------ecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHH--HhcCCC
Confidence 889999999999999 999999999999999999999997654444344555666666 788999
Q ss_pred cccccccccchhhhhHhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhhh
Q 001746 631 CTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQ 691 (1018)
Q Consensus 631 gaDL~~Lct~a~lls~~~~~~~V~~a~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~ 691 (1018)
|+||..+|.+|++....+.. ...|+.+||..|+.++.|+
T Consensus 448 gadi~~i~~ea~~~~~~~~~----------------------~~~~~~~~~~~a~~~~~p~ 486 (494)
T COG0464 448 GADIAALVREAALEALREAR----------------------RREVTLDDFLDALKKIKPS 486 (494)
T ss_pred HHHHHHHHHHHHHHHHHHhc----------------------cCCccHHHHHHHHHhcCCC
Confidence 99999999888876532211 2357889999999987775
No 44
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.89 E-value=3.2e-21 Score=237.56 Aligned_cols=389 Identities=15% Similarity=0.210 Sum_probs=239.0
Q ss_pred HHHHHHHHHhhCCCeEEEEcCchhhhhhccCcchHHHHHHHHHHHHhcCCCCEEEEeeccCCCCCccccccccccccccc
Q 001746 472 AMEALCEVLHSTQPLIVYFPDSSLWLSRAVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPNFG 551 (1018)
Q Consensus 472 ~i~~L~e~~~~~~p~Iiff~did~~~~~s~~~~~~~~~~s~~~~~l~~l~g~v~vi~~~~~~~~~~~~~~~~~~~~~~~~ 551 (1018)
-+..+|+++.+.+|.|||||||+.++..-....-.....+.|...|+ .|.+++||+||..+-
T Consensus 262 ~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~--~g~i~~IgaTt~~e~---------------- 323 (731)
T TIGR02639 262 RLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS--SGKLRCIGSTTYEEY---------------- 323 (731)
T ss_pred HHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh--CCCeEEEEecCHHHH----------------
Confidence 67888999988899999999999986431100011123444555444 589999977775330
Q ss_pred cccCCCCchhhhhcccccCCCcchHHHHhccccEEEEcCCChHHHHHHHHHHHHHHh---hhhhhhhhHHHHHHHHhhhc
Q 001746 552 RLAKLPLPLQRLTEGLKATKRSDDNEIYNLFTNVLSIHPPKEEDLLRTFNKQVEEDR---RIVIYRSNLNELHKVLEDHE 628 (1018)
Q Consensus 552 ~~~~~~~~~~~LvIGmTnR~d~iD~aL~rrFe~~ieI~LPdeegRl~Il~iht~~~~---~~~~~~~~v~~l~~~l~t~~ 628 (1018)
|..-.+|+||.|||. .|+|+.|+.+.+.+||+.+..+.. .....++-++.+.. ....
T Consensus 324 -----------------~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~--ls~r 383 (731)
T TIGR02639 324 -----------------KNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVE--LSAR 383 (731)
T ss_pred -----------------HHHhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHH--hhhc
Confidence 111347999999996 799999999999999997754422 12234444544444 2223
Q ss_pred CCcccccccccchhhhhHhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhhhhhccCCCcccccccchh
Q 001746 629 LSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQETASRKPTQNLKNLAKD 708 (1018)
Q Consensus 629 ~~gaDL~~Lct~a~lls~~~~~~~V~~a~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~~~~~~~~~~~l~~~~~~ 708 (1018)
|-+.. .+...|.-+ +..|....-.. + ....+..|+.+|+..++..+... +...+..+
T Consensus 384 yi~~r--~~P~kai~l--------ld~a~a~~~~~---~-~~~~~~~v~~~~i~~~i~~~tgi---------P~~~~~~~ 440 (731)
T TIGR02639 384 YINDR--FLPDKAIDV--------IDEAGASFRLR---P-KAKKKANVSVKDIENVVAKMAHI---------PVKTVSVD 440 (731)
T ss_pred ccccc--cCCHHHHHH--------HHHhhhhhhcC---c-ccccccccCHHHHHHHHHHHhCC---------ChhhhhhH
Confidence 32211 111111100 00010000000 0 01124568899999988876422 11111111
Q ss_pred ------HhhhhhcccccCCCCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCC---CCCCceEEEEcCCCChHHH
Q 001746 709 ------EYESNFVSAVVPPGEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNL---LRPCKGILLFGPPGTGKTL 779 (1018)
Q Consensus 709 ------e~e~~~~~~ii~~~e~~vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl---~~p~~gVLL~GPPGTGKT~ 779 (1018)
.++..+. ..|.|++..++.+.+.+... +.++ .+|...+||+||+|||||+
T Consensus 441 ~~~~l~~l~~~l~-------------~~v~GQ~~ai~~l~~~i~~~--------~~g~~~~~~p~~~~lf~Gp~GvGKT~ 499 (731)
T TIGR02639 441 DREKLKNLEKNLK-------------AKIFGQDEAIDSLVSSIKRS--------RAGLGNPNKPVGSFLFTGPTGVGKTE 499 (731)
T ss_pred HHHHHHHHHHHHh-------------cceeCcHHHHHHHHHHHHHH--------hcCCCCCCCCceeEEEECCCCccHHH
Confidence 1222222 24678888888888877532 1221 2344458999999999999
Q ss_pred HHHHHHHHhCCcEEEEeccccchh-----hhhhHH-----HHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHH
Q 001746 780 LAKALATEAGANFISITGSTLTSK-----WFGDAE-----KLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATR 849 (1018)
Q Consensus 780 LArAIA~elg~~fi~Is~seL~s~-----~~ge~e-----k~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~ 849 (1018)
||+++|..++.+++.++++++... ..|... .....+....+..+.+||||||||.+. .
T Consensus 500 lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~------------~ 567 (731)
T TIGR02639 500 LAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAH------------P 567 (731)
T ss_pred HHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcC------------H
Confidence 999999999999999999876432 122111 011223344456677999999999873 2
Q ss_pred HHHHHHHhhhccccc-------cCCCcEEEEEecCCCC-------------------------CCcHHHHhccCcccccc
Q 001746 850 RMRNEFMSAWDGLRS-------KESQKILILGATNRPF-------------------------DLDDAVIRRLPRRIYVD 897 (1018)
Q Consensus 850 ~il~~LL~~Ldgl~~-------~~~~~VlVIaTTN~p~-------------------------~LD~aLlrRFd~~I~V~ 897 (1018)
.+.+.|+..|+...- .+-.+.+||+|||... .+.|+++.|++.++.|.
T Consensus 568 ~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~ 647 (731)
T TIGR02639 568 DIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFN 647 (731)
T ss_pred HHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcC
Confidence 345667777764321 1224678888987642 15678888999999999
Q ss_pred CCCHHHHHHHHHHHHhcc-------CCC---CcccHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHHHH
Q 001746 898 LPDAENRMKILRIFLAHE-------SLE---SGFQFNELANA--TEGYSGSDLKNLCIAAAYRPVQELL 954 (1018)
Q Consensus 898 lPd~eeR~eILk~~L~~~-------~l~---~dvdl~~LA~~--TeGfSgaDL~~L~~~Aa~~Airr~~ 954 (1018)
+.+.++..+|++..+... ++. ++..++.|+.. ...|..+.|+.+++.....++.+.+
T Consensus 648 pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~~~ 716 (731)
T TIGR02639 648 PLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSDEI 716 (731)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHHHH
Confidence 999999999999887631 111 23335566664 3456678899888888877766543
No 45
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=3.9e-23 Score=222.06 Aligned_cols=234 Identities=23% Similarity=0.306 Sum_probs=173.4
Q ss_pred HHHHHhhcccCCCcccccccccccccchhhHHHHHHhhhhcccCccchhhcccccCCCCCceeeccCCchhHHHHHHHHH
Q 001746 163 FKNEFSRRIVPWEKINISWDTFPYYINENTKSLLVECVGSHLKHKKFTATFGARLTSSSGRILLRSVPGTELYRERLIRA 242 (1018)
Q Consensus 163 ~~~~~~~~v~~~~~~~vsf~~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~~l~~~~~riLL~~~~gsE~yqe~L~kA 242 (1018)
++..|..+|| -+.=+|.|++.-.+ |..|++|-+|+..++|.+.++ . .=-.+-+.|||+|||| ..+-.||||
T Consensus 115 Lr~~L~sAIv-~EKPNVkWsDVAGL--E~AKeALKEAVILPIKFPqlF-t---GkR~PwrgiLLyGPPG--TGKSYLAKA 185 (439)
T KOG0739|consen 115 LRSALNSAIV-REKPNVKWSDVAGL--EGAKEALKEAVILPIKFPQLF-T---GKRKPWRGILLYGPPG--TGKSYLAKA 185 (439)
T ss_pred HHHHhhhhhh-ccCCCCchhhhccc--hhHHHHHHhheeecccchhhh-c---CCCCcceeEEEeCCCC--CcHHHHHHH
Confidence 4445555555 35679999999999 999999999999999999885 2 2334567899999999 799999999
Q ss_pred HHHhhCCcEEeeecCCCCCCCCCCCCCCccccccccCccccccccccccchhhhcccCccccCCCCchHHHHHHHHHHHh
Q 001746 243 LARELQVPLLVLDSSVLAPYDFADDSSDCESDNYEETSESEVEDENDASNEEEWTSSNEARTDGSDSEADMQATAEAALK 322 (1018)
Q Consensus 243 LA~~~~a~ll~~ds~~l~~~~f~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 322 (1018)
.|.+.+..+..+-||.|..
T Consensus 186 VATEAnSTFFSvSSSDLvS------------------------------------------------------------- 204 (439)
T KOG0739|consen 186 VATEANSTFFSVSSSDLVS------------------------------------------------------------- 204 (439)
T ss_pred HHhhcCCceEEeehHHHHH-------------------------------------------------------------
Confidence 9999877666665541111
Q ss_pred hcccCcHHHHHhhhccccCCcccccccCCCCCccccccccCCCcEEEeCCCcccccccceeeeccccCCCCCCccccccC
Q 001746 323 KLVPFNLEELEKLSGELDSSSESSKSEAAEPSDTSKRLLKKGDRVKYIGPSVRVEADNRIILGKIMTSDGPKNAYTIIPD 402 (1018)
Q Consensus 323 ~~~p~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~gdrvk~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1018)
||.|-|
T Consensus 205 ---------------------------------------------KWmGES----------------------------- 210 (439)
T KOG0739|consen 205 ---------------------------------------------KWMGES----------------------------- 210 (439)
T ss_pred ---------------------------------------------HHhccH-----------------------------
Confidence 111111
Q ss_pred CCCCCCCcccEEeecCCcceeeeccccCCCCCCCCCccccCCCCCCCcccccccccccccccchhhhHHHHHHHHHHHhh
Q 001746 403 RALSSGQRGEVYEVNGDRAAVILDISADNKGEGEKDDKVAEQPARPPVYWIDVKHIEHDLDTQAEDCYIAMEALCEVLHS 482 (1018)
Q Consensus 403 r~~s~g~~g~v~~~n~~k~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~e~~~~ 482 (1018)
+ -+|.-|||-|+.
T Consensus 211 ------------------------------------------------------------------E-kLVknLFemARe 223 (439)
T KOG0739|consen 211 ------------------------------------------------------------------E-KLVKNLFEMARE 223 (439)
T ss_pred ------------------------------------------------------------------H-HHHHHHHHHHHh
Confidence 0 288999999999
Q ss_pred CCCeEEEEcCchhhhh-hccCcchH-HHHHHHHHHHHhcCCCCEEEEeeccCCCCCccccccccccccccccccCCCCch
Q 001746 483 TQPLIVYFPDSSLWLS-RAVPRCNR-KEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPNFGRLAKLPLPL 560 (1018)
Q Consensus 483 ~~p~Iiff~did~~~~-~s~~~~~~-~~~~s~~~~~l~~l~g~v~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (1018)
+.|||||+||||-+.. |+--+|.- .+|-- ++|=+|.|= |.+ +-
T Consensus 224 ~kPSIIFiDEiDslcg~r~enEseasRRIKT---EfLVQMqGV-----G~d---------------------------~~ 268 (439)
T KOG0739|consen 224 NKPSIIFIDEIDSLCGSRSENESEASRRIKT---EFLVQMQGV-----GND---------------------------ND 268 (439)
T ss_pred cCCcEEEeehhhhhccCCCCCchHHHHHHHH---HHHHhhhcc-----ccC---------------------------CC
Confidence 9999999999997633 33333332 23332 344445431 211 11
Q ss_pred hhhhcccccCCCcchHHHHhccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhcCCcccccccccc
Q 001746 561 QRLTEGLKATKRSDDNEIYNLFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLEDHELSCTDLLHVNTD 640 (1018)
Q Consensus 561 ~~LvIGmTnR~d~iD~aL~rrFe~~ieI~LPdeegRl~Il~iht~~~~~~~~~~~~v~~l~~~l~t~~~~gaDL~~Lct~ 640 (1018)
++||.|+||-|--+|.||+|||+.-||||||+..+|...|++|+.. ....+...+..+|+. +|-||+|+|+.-++.+
T Consensus 269 gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~-tp~~LT~~d~~eL~~--kTeGySGsDisivVrD 345 (439)
T KOG0739|consen 269 GVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGD-TPHVLTEQDFKELAR--KTEGYSGSDISIVVRD 345 (439)
T ss_pred ceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCC-CccccchhhHHHHHh--hcCCCCcCceEEEehh
Confidence 3577899999999999999999999999999999999999999754 455667788888887 8899999999766555
Q ss_pred hhhhh
Q 001746 641 GVILT 645 (1018)
Q Consensus 641 a~lls 645 (1018)
+..-.
T Consensus 346 almeP 350 (439)
T KOG0739|consen 346 ALMEP 350 (439)
T ss_pred hhhhh
Confidence 55433
No 46
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.2e-22 Score=238.82 Aligned_cols=248 Identities=21% Similarity=0.308 Sum_probs=203.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCC
Q 001746 762 RPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGG 841 (1018)
Q Consensus 762 ~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~ 841 (1018)
+-...+||+|+||||||++++++|.++|.|++.++|.++.....+..+..+..+|..|++.+|+|||+-++|.+.....+
T Consensus 429 ~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg 508 (953)
T KOG0736|consen 429 TLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG 508 (953)
T ss_pred ccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC
Confidence 33456999999999999999999999999999999999999988999999999999999999999999999999866554
Q ss_pred CcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCCCcc
Q 001746 842 AFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLESGF 921 (1018)
Q Consensus 842 ~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dv 921 (1018)
+..... ...++.++. ++ .......+++||+||+..+.+++.+++.|..+|.++.|+.++|.+||+.++....+..++
T Consensus 509 ged~rl-~~~i~~~ls-~e-~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v 585 (953)
T KOG0736|consen 509 GEDARL-LKVIRHLLS-NE-DFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLNQDV 585 (953)
T ss_pred chhHHH-HHHHHHHHh-cc-cccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccchHH
Confidence 322222 222333333 22 222245689999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCCCCCCccCCCHHHHHHHHHhhCCCcchhhhhHH
Q 001746 922 QFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKR-----GKNDAAPVLRPLKLEDFIQSKAKVGPSVAYDAASMN 996 (1018)
Q Consensus 922 dl~~LA~~TeGfSgaDL~~L~~~Aa~~Airr~~~~~~~~-----~~~~~~~~~rpLT~eDF~~Al~kv~PSvs~~~~~m~ 996 (1018)
.+..+|..|.||+.+|+..++..+-..+..++.+..-.. ...........++++||.+|+.+++...+..++..+
T Consensus 586 ~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPK 665 (953)
T KOG0736|consen 586 NLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPK 665 (953)
T ss_pred HHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhhhhhcCCCC
Confidence 999999999999999999999887555555554433111 112233344689999999999999999988877766
Q ss_pred -HHHHHHHHhCCCCCcc
Q 001746 997 -ELRKWNEQYGEGGSRR 1012 (1018)
Q Consensus 997 -el~kW~diyG~~g~rk 1012 (1018)
+.+.|+|+||++.+|+
T Consensus 666 IPnV~WdDVGGLeevK~ 682 (953)
T KOG0736|consen 666 IPNVSWDDVGGLEEVKT 682 (953)
T ss_pred CCccchhcccCHHHHHH
Confidence 8899999999988875
No 47
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.87 E-value=9.9e-22 Score=230.76 Aligned_cols=157 Identities=11% Similarity=0.179 Sum_probs=119.4
Q ss_pred HHHHHHHHHhhCCCeEEEEcCchhhhhhcc---CcchHHHHHHHHHHHHhcCCCCEEEEeeccCCCCCcccccccccccc
Q 001746 472 AMEALCEVLHSTQPLIVYFPDSSLWLSRAV---PRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILP 548 (1018)
Q Consensus 472 ~i~~L~e~~~~~~p~Iiff~did~~~~~s~---~~~~~~~~~s~~~~~l~~l~g~v~vi~~~~~~~~~~~~~~~~~~~~~ 548 (1018)
.|..+|+.|+..+|+||||||||.++.+.. ......+++.+|...|+....+|+||
T Consensus 306 ~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vI--------------------- 364 (489)
T CHL00195 306 RMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVV--------------------- 364 (489)
T ss_pred HHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEE---------------------
Confidence 567889999999999999999999764311 11234466677777666555556665
Q ss_pred ccccccCCCCchhhhhcccccCCCcchHHHHh--ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhh
Q 001746 549 NFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLED 626 (1018)
Q Consensus 549 ~~~~~~~~~~~~~~LvIGmTnR~d~iD~aL~r--rFe~~ieI~LPdeegRl~Il~iht~~~~~~~~~~~~v~~l~~~l~t 626 (1018)
++||+++.||+||+| ||+..|+|++|+.++|.+||++|+.+.+.....+.+++.++. .|
T Consensus 365 -----------------aTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~--~T 425 (489)
T CHL00195 365 -----------------ATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSK--LS 425 (489)
T ss_pred -----------------EecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHh--hc
Confidence 677788889999998 999999999999999999999998875544334556777776 88
Q ss_pred hcCCcccccccccchhhhhHhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhhhh
Q 001746 627 HELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQE 692 (1018)
Q Consensus 627 ~~~~gaDL~~Lct~a~lls~~~~~~~V~~a~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~~ 692 (1018)
.||+|+||+.+|.+|+..+ +. .+ -.++.+||..|+.+++|.+
T Consensus 426 ~GfSGAdI~~lv~eA~~~A-----------~~-----------~~--~~lt~~dl~~a~~~~~Pls 467 (489)
T CHL00195 426 NKFSGAEIEQSIIEAMYIA-----------FY-----------EK--REFTTDDILLALKQFIPLA 467 (489)
T ss_pred CCCCHHHHHHHHHHHHHHH-----------HH-----------cC--CCcCHHHHHHHHHhcCCCc
Confidence 8999999999987665433 10 00 1368899999999999863
No 48
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=5.1e-22 Score=226.53 Aligned_cols=259 Identities=18% Similarity=0.181 Sum_probs=190.0
Q ss_pred cccccccccccccchhhHHHHHHhhhhcccCccchhhcccccCCCCCceeeccCCchhHHHHHHHHHHHHhhCCcEEeee
Q 001746 176 KINISWDTFPYYINENTKSLLVECVGSHLKHKKFTATFGARLTSSSGRILLRSVPGTELYRERLIRALARELQVPLLVLD 255 (1018)
Q Consensus 176 ~~~vsf~~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~~l~~~~~riLL~~~~gsE~yqe~L~kALA~~~~a~ll~~d 255 (1018)
.=+|.|++||.. +..|+.|.+++..++-+++++ .+|.++-+.|||+|||| ...+||+||+|-+.+|.+..+-
T Consensus 147 ~~~v~~~di~gl--~~~k~~l~e~vi~p~lr~d~F----~glr~p~rglLLfGPpg--tGKtmL~~aiAsE~~atff~iS 218 (428)
T KOG0740|consen 147 LRNVGWDDIAGL--EDAKQSLKEAVILPLLRPDLF----LGLREPVRGLLLFGPPG--TGKTMLAKAIATESGATFFNIS 218 (428)
T ss_pred CCcccccCCcch--hhHHHHhhhhhhhcccchHhh----hccccccchhheecCCC--CchHHHHHHHHhhhcceEeecc
Confidence 446899999999 999999999999999999986 47999999999999999 8999999999999999876555
Q ss_pred cCCCCCCCCCCCCCCccccccccCccccccccccccchhhhcccCccccCCCCchHHHHHHHHHHHhhcccCcHHHHHhh
Q 001746 256 SSVLAPYDFADDSSDCESDNYEETSESEVEDENDASNEEEWTSSNEARTDGSDSEADMQATAEAALKKLVPFNLEELEKL 335 (1018)
Q Consensus 256 s~~l~~~~f~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 335 (1018)
.+.|++
T Consensus 219 assLts-------------------------------------------------------------------------- 224 (428)
T KOG0740|consen 219 ASSLTS-------------------------------------------------------------------------- 224 (428)
T ss_pred HHHhhh--------------------------------------------------------------------------
Confidence 432221
Q ss_pred hccccCCcccccccCCCCCccccccccCCCcEEEeCCCcccccccceeeeccccCCCCCCccccccCCCCCCCCcccEEe
Q 001746 336 SGELDSSSESSKSEAAEPSDTSKRLLKKGDRVKYIGPSVRVEADNRIILGKIMTSDGPKNAYTIIPDRALSSGQRGEVYE 415 (1018)
Q Consensus 336 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~gdrvk~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~s~g~~g~v~~ 415 (1018)
||+|-+
T Consensus 225 --------------------------------K~~Ge~------------------------------------------ 230 (428)
T KOG0740|consen 225 --------------------------------KYVGES------------------------------------------ 230 (428)
T ss_pred --------------------------------hccChH------------------------------------------
Confidence 333321
Q ss_pred ecCCcceeeeccccCCCCCCCCCccccCCCCCCCcccccccccccccccchhhhHHHHHHHHHHHhhCCCeEEEEcCchh
Q 001746 416 VNGDRAAVILDISADNKGEGEKDDKVAEQPARPPVYWIDVKHIEHDLDTQAEDCYIAMEALCEVLHSTQPLIVYFPDSSL 495 (1018)
Q Consensus 416 ~n~~k~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~e~~~~~~p~Iiff~did~ 495 (1018)
.-+|.+||++|+..||+|||+||||.
T Consensus 231 ------------------------------------------------------eK~vralf~vAr~~qPsvifidEids 256 (428)
T KOG0740|consen 231 ------------------------------------------------------EKLVRALFKVARSLQPSVIFIDEIDS 256 (428)
T ss_pred ------------------------------------------------------HHHHHHHHHHHHhcCCeEEEechhHH
Confidence 12899999999999999999999999
Q ss_pred hhhhccCcch--HHHHHHHHHHHHhcCCCCEEEEeeccCCCCCccccccccccccccccccCCCCchhhhhcccccCCCc
Q 001746 496 WLSRAVPRCN--RKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPNFGRLAKLPLPLQRLTEGLKATKRS 573 (1018)
Q Consensus 496 ~~~~s~~~~~--~~~~~s~~~~~l~~l~g~v~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LvIGmTnR~d~ 573 (1018)
++..-..+.. -..+.-.++- ..++++..++ + .+||||+||||..
T Consensus 257 lls~Rs~~e~e~srr~ktefLi---------q~~~~~s~~~-----------------------d--rvlvigaTN~P~e 302 (428)
T KOG0740|consen 257 LLSKRSDNEHESSRRLKTEFLL---------QFDGKNSAPD-----------------------D--RVLVIGATNRPWE 302 (428)
T ss_pred HHhhcCCcccccchhhhhHHHh---------hhccccCCCC-----------------------C--eEEEEecCCCchH
Confidence 7533111111 0111111111 1222333222 0 3678899999999
Q ss_pred chHHHHhccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhcCCcccccccccchhhhhHhhhhhhH
Q 001746 574 DDNEIYNLFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLEDHELSCTDLLHVNTDGVILTKQRAEKVV 653 (1018)
Q Consensus 574 iD~aL~rrFe~~ieI~LPdeegRl~Il~iht~~~~~~~~~~~~v~~l~~~l~t~~~~gaDL~~Lct~a~lls~~~~~~~V 653 (1018)
+|+|++|||-.-+||||||.++|.++|+.-+.+. .......++..+++ .|-||+|.||-+||.++++--.......
T Consensus 303 ~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~-~~~l~~~d~~~l~~--~Tegysgsdi~~l~kea~~~p~r~~~~~- 378 (428)
T KOG0740|consen 303 LDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQ-PNGLSDLDISLLAK--VTEGYSGSDITALCKEAAMGPLRELGGT- 378 (428)
T ss_pred HHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhC-CCCccHHHHHHHHH--HhcCcccccHHHHHHHhhcCchhhcccc-
Confidence 9999999999999999999999999999887776 66777788988888 5668999999999998876443322221
Q ss_pred hhcccccccccCCCCccCCceeeCHHHHHHHHHHhhhh
Q 001746 654 GWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQ 691 (1018)
Q Consensus 654 ~~a~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~ 691 (1018)
-........ ..-.+...||..++..++++
T Consensus 379 -~~~~~~~~~--------~~r~i~~~df~~a~~~i~~~ 407 (428)
T KOG0740|consen 379 -TDLEFIDAD--------KIRPITYPDFKNAFKNIKPS 407 (428)
T ss_pred -hhhhhcchh--------ccCCCCcchHHHHHHhhccc
Confidence 011111111 11234567899999888886
No 49
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.87 E-value=7e-22 Score=227.29 Aligned_cols=155 Identities=8% Similarity=0.132 Sum_probs=111.3
Q ss_pred HHHHHHHHHhhCCCeEEEEcCchhhhhhcc--Ccc---hHHHHHHHHHHHHhcCC--CCEEEEeeccCCCCCcccccccc
Q 001746 472 AMEALCEVLHSTQPLIVYFPDSSLWLSRAV--PRC---NRKEFVRKVEEMFDQLS--GPVVLICGQNKNETGPKEKEKFT 544 (1018)
Q Consensus 472 ~i~~L~e~~~~~~p~Iiff~did~~~~~s~--~~~---~~~~~~s~~~~~l~~l~--g~v~vi~~~~~~~~~~~~~~~~~ 544 (1018)
.+..+|+.|+..+|+||||||||.+..... +.. ...+++..|...||+++ ++++
T Consensus 226 ~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~------------------- 286 (398)
T PTZ00454 226 MVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVK------------------- 286 (398)
T ss_pred HHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEE-------------------
Confidence 567789999999999999999998753211 111 11223333444444433 2333
Q ss_pred ccccccccccCCCCchhhhhcccccCCCcchHHHHh--ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001746 545 MILPNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHK 622 (1018)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~LvIGmTnR~d~iD~aL~r--rFe~~ieI~LPdeegRl~Il~iht~~~~~~~~~~~~v~~l~~ 622 (1018)
+|++||+++.||+||+| ||+++|+|++|+.++|.+||++|+.++. ...+.+++.++.
T Consensus 287 -------------------VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~--l~~dvd~~~la~ 345 (398)
T PTZ00454 287 -------------------VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMN--LSEEVDLEDFVS 345 (398)
T ss_pred -------------------EEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCC--CCcccCHHHHHH
Confidence 45778888999999998 9999999999999999999999986543 122344555554
Q ss_pred HHhhhcCCcccccccccchhhhhHhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhhh
Q 001746 623 VLEDHELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQ 691 (1018)
Q Consensus 623 ~l~t~~~~gaDL~~Lct~a~lls~~~~~~~V~~a~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~ 691 (1018)
.+.||+|+||.+||.+|...+.. .++..|+.+||..|+.++...
T Consensus 346 --~t~g~sgaDI~~l~~eA~~~A~r-----------------------~~~~~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 346 --RPEKISAADIAAICQEAGMQAVR-----------------------KNRYVILPKDFEKGYKTVVRK 389 (398)
T ss_pred --HcCCCCHHHHHHHHHHHHHHHHH-----------------------cCCCccCHHHHHHHHHHHHhc
Confidence 78899999999999888765521 122368899999999887643
No 50
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1e-21 Score=207.03 Aligned_cols=157 Identities=16% Similarity=0.225 Sum_probs=120.6
Q ss_pred HHHHHHHHHhhCCCeEEEEcCchhh----hhhccCcchHHHHHHHHHHHHhcCCCCEEEEeeccCCCCCccccccccccc
Q 001746 472 AMEALCEVLHSTQPLIVYFPDSSLW----LSRAVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMIL 547 (1018)
Q Consensus 472 ~i~~L~e~~~~~~p~Iiff~did~~----~~~s~~~~~~~~~~s~~~~~l~~l~g~v~vi~~~~~~~~~~~~~~~~~~~~ 547 (1018)
.+..||=-|+.+-|||||+||||.. +.++... -.+.-.+.+++|+.|||= -+++
T Consensus 228 mvrelfvmarehapsiifmdeidsigs~r~e~~~gg--dsevqrtmlellnqldgf----eatk---------------- 285 (404)
T KOG0728|consen 228 MVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGG--DSEVQRTMLELLNQLDGF----EATK---------------- 285 (404)
T ss_pred HHHHHHHHHHhcCCceEeeecccccccccccCCCCc--cHHHHHHHHHHHHhcccc----cccc----------------
Confidence 7889999999999999999999985 3222221 134556778888888862 1222
Q ss_pred cccccccCCCCchhhhhcccccCCCcchHHHHh--ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHh
Q 001746 548 PNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLE 625 (1018)
Q Consensus 548 ~~~~~~~~~~~~~~~LvIGmTnR~d~iD~aL~r--rFe~~ieI~LPdeegRl~Il~iht~~~~~~~~~~~~v~~l~~~l~ 625 (1018)
|+-||=+|||.|.+|+||+| |.|+.||||+|++++|++||+||-.+|. ....-|+..+++ +
T Consensus 286 -------------nikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmn--l~rgi~l~kiae--k 348 (404)
T KOG0728|consen 286 -------------NIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMN--LTRGINLRKIAE--K 348 (404)
T ss_pred -------------ceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhc--hhcccCHHHHHH--h
Confidence 23366789999999999999 9999999999999999999999955442 223345777777 6
Q ss_pred hhcCCcccccccccchhhhhHhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhh
Q 001746 626 DHELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKE 690 (1018)
Q Consensus 626 t~~~~gaDL~~Lct~a~lls~~~~~~~V~~a~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p 690 (1018)
-.|-+|||+.++||+|-.++- ..-++.|+.+||+.|+.++-.
T Consensus 349 m~gasgaevk~vcteagm~al-----------------------rerrvhvtqedfemav~kvm~ 390 (404)
T KOG0728|consen 349 MPGASGAEVKGVCTEAGMYAL-----------------------RERRVHVTQEDFEMAVAKVMQ 390 (404)
T ss_pred CCCCccchhhhhhhhhhHHHH-----------------------HHhhccccHHHHHHHHHHHHh
Confidence 678899999999999876441 234678999999999987653
No 51
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.86 E-value=1.4e-19 Score=222.04 Aligned_cols=389 Identities=15% Similarity=0.191 Sum_probs=238.3
Q ss_pred HHHHHHHHHHhhCCCeEEEEcCchhhhhhccCcchHHHHHHHHHHHHhcCCCCEEEEeeccCCCCCcccccccccccccc
Q 001746 471 IAMEALCEVLHSTQPLIVYFPDSSLWLSRAVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPNF 550 (1018)
Q Consensus 471 ~~i~~L~e~~~~~~p~Iiff~did~~~~~s~~~~~~~~~~s~~~~~l~~l~g~v~vi~~~~~~~~~~~~~~~~~~~~~~~ 550 (1018)
--+..+|+++.+.+|.|||||||+.++........+..+.+.|..+|. .|+++|||+||..+ -.+
T Consensus 265 ~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~--~g~i~vIgATt~~E-~~~------------ 329 (758)
T PRK11034 265 KRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQE-FSN------------ 329 (758)
T ss_pred HHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh--CCCeEEEecCChHH-HHH------------
Confidence 367889999988999999999999987554322233466777777665 48899987776533 000
Q ss_pred ccccCCCCchhhhhcccccCCCcchHHHHhccccEEEEcCCChHHHHHHHHHHHHHHhhh---hhhhhhHHHHHHHHhhh
Q 001746 551 GRLAKLPLPLQRLTEGLKATKRSDDNEIYNLFTNVLSIHPPKEEDLLRTFNKQVEEDRRI---VIYRSNLNELHKVLEDH 627 (1018)
Q Consensus 551 ~~~~~~~~~~~~LvIGmTnR~d~iD~aL~rrFe~~ieI~LPdeegRl~Il~iht~~~~~~---~~~~~~v~~l~~~l~t~ 627 (1018)
.-..|+||.|||. .|+|+.|+.+.+.+||+.+..+.... ...+.-+..... .+.
T Consensus 330 --------------------~~~~D~AL~rRFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~--ls~ 386 (758)
T PRK11034 330 --------------------IFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVE--LAV 386 (758)
T ss_pred --------------------HhhccHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHH--Hhh
Confidence 0247999999995 79999999999999999875544322 112222222222 122
Q ss_pred cC-Ccccc----cccccchhhhhHhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhhhhhccCCCcccc
Q 001746 628 EL-SCTDL----LHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQETASRKPTQNL 702 (1018)
Q Consensus 628 ~~-~gaDL----~~Lct~a~lls~~~~~~~V~~a~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~~~~~~~~~~~l 702 (1018)
.| ++.-| ..|+.++.. +. + +. +. ...+-.|+.+|+...+.+.... +.
T Consensus 387 ryi~~r~lPdKaidlldea~a-----------~~--~-~~----~~-~~~~~~v~~~~i~~v~~~~tgi---------p~ 438 (758)
T PRK11034 387 KYINDRHLPDKAIDVIDEAGA-----------RA--R-LM----PV-SKRKKTVNVADIESVVARIARI---------PE 438 (758)
T ss_pred ccccCccChHHHHHHHHHHHH-----------hh--c-cC----cc-cccccccChhhHHHHHHHHhCC---------Ch
Confidence 22 22211 111111110 00 0 00 00 0112246677777766554421 11
Q ss_pred cccchh------HhhhhhcccccCCCCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCCh
Q 001746 703 KNLAKD------EYESNFVSAVVPPGEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTG 776 (1018)
Q Consensus 703 ~~~~~~------e~e~~~~~~ii~~~e~~vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTG 776 (1018)
..+..+ .++..+. ..|.|+++.++.|.+.+...... + ....+|..++||+||||||
T Consensus 439 ~~~~~~~~~~l~~l~~~L~-------------~~ViGQ~~ai~~l~~~i~~~~~g--l---~~~~kp~~~~Lf~GP~GvG 500 (758)
T PRK11034 439 KSVSQSDRDTLKNLGDRLK-------------MLVFGQDKAIEALTEAIKMSRAG--L---GHEHKPVGSFLFAGPTGVG 500 (758)
T ss_pred hhhhhhHHHHHHHHHHHhc-------------ceEeCcHHHHHHHHHHHHHHhcc--c---cCCCCCcceEEEECCCCCC
Confidence 111111 1222211 24678999999999888542110 0 0012455579999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEeccccch-----hhhhhHHHH-----HHHHHHHHHhcCCeEEEecchhhhhhccCCCcchH
Q 001746 777 KTLLAKALATEAGANFISITGSTLTS-----KWFGDAEKL-----TKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHE 846 (1018)
Q Consensus 777 KT~LArAIA~elg~~fi~Is~seL~s-----~~~ge~ek~-----I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e 846 (1018)
||++|+++|..++.+|+.++++++.. ..+|..... -..+....++.+.+||||||||.+.
T Consensus 501 KT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~---------- 570 (758)
T PRK11034 501 KTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAH---------- 570 (758)
T ss_pred HHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhh----------
Confidence 99999999999999999999987632 222221111 1122333455667999999999973
Q ss_pred HHHHHHHHHHhhhcccc-c------cCCCcEEEEEecCCC-------------------------CCCcHHHHhccCccc
Q 001746 847 ATRRMRNEFMSAWDGLR-S------KESQKILILGATNRP-------------------------FDLDDAVIRRLPRRI 894 (1018)
Q Consensus 847 ~~~~il~~LL~~Ldgl~-~------~~~~~VlVIaTTN~p-------------------------~~LD~aLlrRFd~~I 894 (1018)
..+.+.|+..|+... . ..-.+++||+|||.- ..+.|+++.|++.+|
T Consensus 571 --~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii 648 (758)
T PRK11034 571 --PDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNII 648 (758)
T ss_pred --HHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEE
Confidence 335667777776321 1 122467899999832 126688899999999
Q ss_pred cccCCCHHHHHHHHHHHHhc-------cCCC---CcccHHHHHHHc--cCCCHHHHHHHHHHHHHHHHHHHHH
Q 001746 895 YVDLPDAENRMKILRIFLAH-------ESLE---SGFQFNELANAT--EGYSGSDLKNLCIAAAYRPVQELLE 955 (1018)
Q Consensus 895 ~V~lPd~eeR~eILk~~L~~-------~~l~---~dvdl~~LA~~T--eGfSgaDL~~L~~~Aa~~Airr~~~ 955 (1018)
.|++.+.++..+|+..++.. .++. ++.-++.|+... ..|-.+.|+.+++.-...++.+.+-
T Consensus 649 ~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~~il 721 (758)
T PRK11034 649 WFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANELL 721 (758)
T ss_pred EcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999877652 2222 222355566543 2355688998888888777776543
No 52
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.6e-21 Score=233.75 Aligned_cols=156 Identities=12% Similarity=0.158 Sum_probs=121.3
Q ss_pred HHHHHHHHHhhCCCeEEEEcCchhh--hhh----ccCcchHHHHHHHHHHHHhcCC--CCEEEEeeccCCCCCccccccc
Q 001746 472 AMEALCEVLHSTQPLIVYFPDSSLW--LSR----AVPRCNRKEFVRKVEEMFDQLS--GPVVLICGQNKNETGPKEKEKF 543 (1018)
Q Consensus 472 ~i~~L~e~~~~~~p~Iiff~did~~--~~~----s~~~~~~~~~~s~~~~~l~~l~--g~v~vi~~~~~~~~~~~~~~~~ 543 (1018)
.|..||..|++.-|+|||+||||-. .+. .-..+-+++..+-|+.-||++. +.||||
T Consensus 391 rvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~---------------- 454 (774)
T KOG0731|consen 391 RVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVL---------------- 454 (774)
T ss_pred HHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEE----------------
Confidence 6889999999999999999999985 331 1244567888888888888886 334554
Q ss_pred cccccccccccCCCCchhhhhcccccCCCcchHHHHh--ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Q 001746 544 TMILPNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELH 621 (1018)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~LvIGmTnR~d~iD~aL~r--rFe~~ieI~LPdeegRl~Il~iht~~~~~~~~~~~~v~~l~ 621 (1018)
+||||+|-+|+||+| |||++|.|.+||..+|.+||++|..+ .....++++...
T Consensus 455 ----------------------a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~---~~~~~e~~dl~~ 509 (774)
T KOG0731|consen 455 ----------------------AATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRK---KKLDDEDVDLSK 509 (774)
T ss_pred ----------------------eccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhc---cCCCcchhhHHH
Confidence 788899999999999 99999999999999999999999543 333334444444
Q ss_pred HHHhhhcCCcccccccccchhhhhHhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhhh
Q 001746 622 KVLEDHELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQ 691 (1018)
Q Consensus 622 ~~l~t~~~~gaDL~~Lct~a~lls~~~~~~~V~~a~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~ 691 (1018)
.+..|.||+||||..||-+|++++.. .+.-.|+..+|+.|++++...
T Consensus 510 ~a~~t~gf~gadl~n~~neaa~~a~r-----------------------~~~~~i~~~~~~~a~~Rvi~G 556 (774)
T KOG0731|consen 510 LASLTPGFSGADLANLCNEAALLAAR-----------------------KGLREIGTKDLEYAIERVIAG 556 (774)
T ss_pred HHhcCCCCcHHHHHhhhhHHHHHHHH-----------------------hccCccchhhHHHHHHHHhcc
Confidence 55589999999999999998887621 122346778999999876654
No 53
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.86 E-value=1.8e-21 Score=223.74 Aligned_cols=156 Identities=17% Similarity=0.249 Sum_probs=114.0
Q ss_pred HHHHHHHHHhhCCCeEEEEcCchhhhhhc--cCcchHHHHHHHHHHHHhcCCC-----CEEEEeeccCCCCCcccccccc
Q 001746 472 AMEALCEVLHSTQPLIVYFPDSSLWLSRA--VPRCNRKEFVRKVEEMFDQLSG-----PVVLICGQNKNETGPKEKEKFT 544 (1018)
Q Consensus 472 ~i~~L~e~~~~~~p~Iiff~did~~~~~s--~~~~~~~~~~s~~~~~l~~l~g-----~v~vi~~~~~~~~~~~~~~~~~ 544 (1018)
.+..+|+.++..+|+||||||||.+.... ...+...++..++..++..|+| +++|
T Consensus 212 ~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~V------------------ 273 (389)
T PRK03992 212 LVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKI------------------ 273 (389)
T ss_pred HHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEE------------------
Confidence 56789999999999999999999975321 1111122344444555555553 3444
Q ss_pred ccccccccccCCCCchhhhhcccccCCCcchHHHHh--ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001746 545 MILPNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHK 622 (1018)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~LvIGmTnR~d~iD~aL~r--rFe~~ieI~LPdeegRl~Il~iht~~~~~~~~~~~~v~~l~~ 622 (1018)
|++||+++.||+||+| ||++.++|++|+.++|.+||++|+.++.- ..+.+++.++.
T Consensus 274 --------------------I~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~--~~~~~~~~la~ 331 (389)
T PRK03992 274 --------------------IAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNL--ADDVDLEELAE 331 (389)
T ss_pred --------------------EEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCC--CCcCCHHHHHH
Confidence 5778888899999998 99999999999999999999999754321 12245666655
Q ss_pred HHhhhcCCcccccccccchhhhhHhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhhhh
Q 001746 623 VLEDHELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQE 692 (1018)
Q Consensus 623 ~l~t~~~~gaDL~~Lct~a~lls~~~~~~~V~~a~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~~ 692 (1018)
.|.||+|+||++||++|...+..+ ++-.|+.+||+.|+.++++..
T Consensus 332 --~t~g~sgadl~~l~~eA~~~a~~~-----------------------~~~~i~~~d~~~A~~~~~~~~ 376 (389)
T PRK03992 332 --LTEGASGADLKAICTEAGMFAIRD-----------------------DRTEVTMEDFLKAIEKVMGKE 376 (389)
T ss_pred --HcCCCCHHHHHHHHHHHHHHHHHc-----------------------CCCCcCHHHHHHHHHHHhccc
Confidence 788999999999999887655221 112478999999999998863
No 54
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2.6e-21 Score=225.78 Aligned_cols=260 Identities=23% Similarity=0.239 Sum_probs=201.1
Q ss_pred cccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccccchhhh
Q 001746 730 DIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA----GANFISITGSTLTSKWF 805 (1018)
Q Consensus 730 DIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~el----g~~fi~Is~seL~s~~~ 805 (1018)
|++-...+|++..+....| +-...+|||+||+|+|||.|++++++++ -+++..++|+.+-...+
T Consensus 409 d~i~~~s~kke~~n~~~sp------------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~ 476 (952)
T KOG0735|consen 409 DFIQVPSYKKENANQELSP------------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSL 476 (952)
T ss_pred ceeecchhhhhhhhhhccc------------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhH
Confidence 4555566666655533222 1223569999999999999999999998 46788899999998888
Q ss_pred hhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccC-CCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcH
Q 001746 806 GDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARG-GAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDD 884 (1018)
Q Consensus 806 ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~-~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~LD~ 884 (1018)
....+.+..+|..+.+++|+||++||+|.|++... ...........+..|+..+-......+..+.||||.+....+++
T Consensus 477 e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~ 556 (952)
T KOG0735|consen 477 EKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNP 556 (952)
T ss_pred HHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcCh
Confidence 88999999999999999999999999999997322 22222233333445554333333344567899999999999999
Q ss_pred HHHh--ccCccccccCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001746 885 AVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKRG 961 (1018)
Q Consensus 885 aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeGfSgaDL~~L~~~Aa~~Airr~~~~~~~~~ 961 (1018)
.|.+ +|+..+.++.|+..+|.+||+..+++.... ..-|+.-++..|+||...||..++.+|.+.|+.+.+...
T Consensus 557 ~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~---- 632 (952)
T KOG0735|consen 557 LLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNG---- 632 (952)
T ss_pred hhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccC----
Confidence 8888 899999999999999999999999876522 223455599999999999999999999999985432111
Q ss_pred CCCCCCCccCCCHHHHHHHHHhhCCCcchhhhhHHHH-HHHHHHhCCCCCcc
Q 001746 962 KNDAAPVLRPLKLEDFIQSKAKVGPSVAYDAASMNEL-RKWNEQYGEGGSRR 1012 (1018)
Q Consensus 962 ~~~~~~~~rpLT~eDF~~Al~kv~PSvs~~~~~m~el-~kW~diyG~~g~rk 1012 (1018)
..-+|.++|.++++.+.|...+++..-.+. ..|.|++|....|+
T Consensus 633 -------~klltke~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg~~~~k~ 677 (952)
T KOG0735|consen 633 -------PKLLTKELFEKSLKDFVPLALRGIKLVKSTGIRWEDIGGLFEAKK 677 (952)
T ss_pred -------cccchHHHHHHHHHhcChHHhhhccccccCCCCceecccHHHHHH
Confidence 125899999999999999998887776654 79999999987765
No 55
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=4.6e-21 Score=218.15 Aligned_cols=158 Identities=13% Similarity=0.156 Sum_probs=109.3
Q ss_pred HHHHHHHHHhhCCCeEEEEcCchhhhhhccCcchHHHHHHHHHHHHhcCCCCEEEEeeccCCCCCccccccccccccccc
Q 001746 472 AMEALCEVLHSTQPLIVYFPDSSLWLSRAVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPNFG 551 (1018)
Q Consensus 472 ~i~~L~e~~~~~~p~Iiff~did~~~~~s~~~~~~~~~~s~~~~~l~~l~g~v~vi~~~~~~~~~~~~~~~~~~~~~~~~ 551 (1018)
-|..||..|++.-|.|||+||||-.=..-.+...| -.-.|+-.||-.|||=- +|
T Consensus 384 RVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~-y~kqTlNQLLvEmDGF~-----qN-------------------- 437 (752)
T KOG0734|consen 384 RVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQH-YAKQTLNQLLVEMDGFK-----QN-------------------- 437 (752)
T ss_pred HHHHHHHHHHhcCCeEEEEechhhhcccCCccHHH-HHHHHHHHHHHHhcCcC-----cC--------------------
Confidence 57889999999999999999999642111233332 22445555665666410 00
Q ss_pred cccCCCCchhhhhcccccCCCcchHHHHh--ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhh-hhhHHHHHHHHhhhc
Q 001746 552 RLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIY-RSNLNELHKVLEDHE 628 (1018)
Q Consensus 552 ~~~~~~~~~~~LvIGmTnR~d~iD~aL~r--rFe~~ieI~LPdeegRl~Il~iht~~~~~~~~~-~~~v~~l~~~l~t~~ 628 (1018)
=.+.|||+||+||.+|+||+| |||+||.+|+||-.||.+||+.|+ .+.... +.|...|+. -|-|
T Consensus 438 --------eGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl---~ki~~~~~VD~~iiAR--GT~G 504 (752)
T KOG0734|consen 438 --------EGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYL---SKIPLDEDVDPKIIAR--GTPG 504 (752)
T ss_pred --------CceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHH---hcCCcccCCCHhHhcc--CCCC
Confidence 012245888888889999998 999999999999999999999994 444443 334555555 7889
Q ss_pred CCcccccccccchhhhhHhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhhh
Q 001746 629 LSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQ 691 (1018)
Q Consensus 629 ~~gaDL~~Lct~a~lls~~~~~~~V~~a~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~ 691 (1018)
|+||||..|.-.|++.+ | + ++...|++++|+-|-+++.-.
T Consensus 505 FsGAdLaNlVNqAAlkA----------a------------~-dga~~VtM~~LE~akDrIlMG 544 (752)
T KOG0734|consen 505 FSGADLANLVNQAALKA----------A------------V-DGAEMVTMKHLEFAKDRILMG 544 (752)
T ss_pred CchHHHHHHHHHHHHHH----------H------------h-cCcccccHHHHhhhhhheeec
Confidence 99999998754433321 2 1 233568888988887776643
No 56
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=2e-20 Score=203.40 Aligned_cols=248 Identities=29% Similarity=0.374 Sum_probs=190.4
Q ss_pred ccCCCCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC--------
Q 001746 718 VVPPGEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAG-------- 789 (1018)
Q Consensus 718 ii~~~e~~vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg-------- 789 (1018)
++|..+-.-.|+.++--..+|+.|..++...+...+.-....++...+-||||||||||||+|++|+|+.+.
T Consensus 131 ~LPa~eF~glWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~ 210 (423)
T KOG0744|consen 131 YLPAAEFDGLWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYY 210 (423)
T ss_pred eccchhhhhhHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccc
Confidence 455555556788888888899999999887766555444556667778899999999999999999999983
Q ss_pred -CcEEEEeccccchhhhhhHHHHHHHHHHHHHhc-----CCeEEEecchhhhhhccCC---CcchHHHHHHHHHHHhhhc
Q 001746 790 -ANFISITGSTLTSKWFGDAEKLTKALFSFASKL-----APVIIFVDEVDSLLGARGG---AFEHEATRRMRNEFMSAWD 860 (1018)
Q Consensus 790 -~~fi~Is~seL~s~~~ge~ek~I~~lF~~A~k~-----~PsIIfIDEID~L~~~r~~---~~~~e~~~~il~~LL~~Ld 860 (1018)
..++.+++..++++|++++.+.+.++|...... .-.+++|||+++|...|.+ ..++...-+++|++|+++|
T Consensus 211 ~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlD 290 (423)
T KOG0744|consen 211 KGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLD 290 (423)
T ss_pred cceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHH
Confidence 357899999999999999999999999886543 2347789999999987743 2345566789999999999
Q ss_pred cccccCCCcEEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccC---C------C---------Cccc
Q 001746 861 GLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHES---L------E---------SGFQ 922 (1018)
Q Consensus 861 gl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~---l------~---------~dvd 922 (1018)
.+.. ..+|++++|+|-.+.+|.|+..|-|.+.+|++|+...|.+|++..+...- + . .+..
T Consensus 291 rlK~--~~NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~ 368 (423)
T KOG0744|consen 291 RLKR--YPNVLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKAL 368 (423)
T ss_pred Hhcc--CCCEEEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhH
Confidence 9965 45799999999999999999999999999999999999999998875311 1 0 1111
Q ss_pred HHHHHHH-ccCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHHhh
Q 001746 923 FNELANA-TEGYSGSDLKNLCIAAAYRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQSKAKV 984 (1018)
Q Consensus 923 l~~LA~~-TeGfSgaDL~~L~~~Aa~~Airr~~~~~~~~~~~~~~~~~rpLT~eDF~~Al~kv 984 (1018)
...++.. +.|.||+-|+.|=-.|...- ....+++.++|..|+-..
T Consensus 369 ~~~~~~~~~~gLSGRtlrkLP~Laha~y-----------------~~~~~v~~~~fl~al~ea 414 (423)
T KOG0744|consen 369 RNILIELSTVGLSGRTLRKLPLLAHAEY-----------------FRTFTVDLSNFLLALLEA 414 (423)
T ss_pred HHHHHHHhhcCCccchHhhhhHHHHHhc-----------------cCCCccChHHHHHHHHHH
Confidence 2333333 47999998887754332111 112579999999887543
No 57
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=3.8e-21 Score=206.28 Aligned_cols=152 Identities=17% Similarity=0.250 Sum_probs=116.4
Q ss_pred HHHHHHHHHhhCCCeEEEEcCchhh----hhhccCcchHHHHHHHHHHHHhcCC-----CCEEEEeeccCCCCCcccccc
Q 001746 472 AMEALCEVLHSTQPLIVYFPDSSLW----LSRAVPRCNRKEFVRKVEEMFDQLS-----GPVVLICGQNKNETGPKEKEK 542 (1018)
Q Consensus 472 ~i~~L~e~~~~~~p~Iiff~did~~----~~~s~~~~~~~~~~s~~~~~l~~l~-----g~v~vi~~~~~~~~~~~~~~~ 542 (1018)
++..||.+|..+.|||+|+||||.. ..++ .--..+|-.+.++||+.|| |-|=||
T Consensus 266 lvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~--SggerEiQrtmLELLNQldGFdsrgDvKvi--------------- 328 (440)
T KOG0726|consen 266 LVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSN--SGGEREIQRTMLELLNQLDGFDSRGDVKVI--------------- 328 (440)
T ss_pred HHHHHHHHHHhcCCceEEeehhhhhccccccCC--CccHHHHHHHHHHHHHhccCccccCCeEEE---------------
Confidence 8999999999999999999999975 1111 1122467777788888887 445455
Q ss_pred ccccccccccccCCCCchhhhhcccccCCCcchHHHHh--ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHH
Q 001746 543 FTMILPNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNEL 620 (1018)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~LvIGmTnR~d~iD~aL~r--rFe~~ieI~LPdeegRl~Il~iht~~~~~~~~~~~~v~~l 620 (1018)
=+|||.+.+|+||.| |.|+.|+|++||+..+..||.|||.+|. ...+++.-
T Consensus 329 -----------------------mATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mt----l~~dVnle 381 (440)
T KOG0726|consen 329 -----------------------MATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMT----LAEDVNLE 381 (440)
T ss_pred -----------------------EecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccc----hhccccHH
Confidence 345666667777777 9999999999999999999999988775 34455544
Q ss_pred HHHHhhhcCCcccccccccchhhhhHhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhh
Q 001746 621 HKVLEDHELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKE 690 (1018)
Q Consensus 621 ~~~l~t~~~~gaDL~~Lct~a~lls~~~~~~~V~~a~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p 690 (1018)
...+....++|||+.++||+|-+++-. .-++.|+++||..|.+.+--
T Consensus 382 ~li~~kddlSGAdIkAictEaGllAlR-----------------------erRm~vt~~DF~ka~e~V~~ 428 (440)
T KOG0726|consen 382 ELIMTKDDLSGADIKAICTEAGLLALR-----------------------ERRMKVTMEDFKKAKEKVLY 428 (440)
T ss_pred HHhhcccccccccHHHHHHHHhHHHHH-----------------------HHHhhccHHHHHHHHHHHHH
Confidence 555577799999999999999876622 23567899999999877643
No 58
>CHL00181 cbbX CbbX; Provisional
Probab=99.83 E-value=1.4e-19 Score=200.30 Aligned_cols=237 Identities=18% Similarity=0.271 Sum_probs=169.5
Q ss_pred ccccChHHHHHHHHHHHHcccCCchhhccCCCCCC--CceEEEEcCCCChHHHHHHHHHHHh---C----CcEEEEeccc
Q 001746 729 DDIGALEDVKKALNELVILPMRRPDLFSRGNLLRP--CKGILLFGPPGTGKTLLAKALATEA---G----ANFISITGST 799 (1018)
Q Consensus 729 dDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p--~~gVLL~GPPGTGKT~LArAIA~el---g----~~fi~Is~se 799 (1018)
.+++|++++|++|.+++.+ +..+..+...+...+ ..++||+||||||||++|+++|+.+ | .+++.++.++
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 4799999999999998876 333455554554332 3459999999999999999999976 2 3689999999
Q ss_pred cchhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCC
Q 001746 800 LTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP 879 (1018)
Q Consensus 800 L~s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p 879 (1018)
+.+.+.|+.+..+..+|..|. ++||||||++.+...+. .......++..|+..|+.. ...++||++++..
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~---~~~~~~e~~~~L~~~me~~----~~~~~vI~ag~~~ 171 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDN---ERDYGSEAIEILLQVMENQ----RDDLVVIFAGYKD 171 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCC---ccchHHHHHHHHHHHHhcC----CCCEEEEEeCCcH
Confidence 999999988777788888763 58999999999865322 1223456677777777643 2457777776532
Q ss_pred -----CCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHH------ccCCC-HHHHHHHHHHHH
Q 001746 880 -----FDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANA------TEGYS-GSDLKNLCIAAA 946 (1018)
Q Consensus 880 -----~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~------TeGfS-gaDL~~L~~~Aa 946 (1018)
..++|++.+||+..|.|+.++.+++.+|+..++...... .+.....+... ...|. +++++++++.|.
T Consensus 172 ~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~ 251 (287)
T CHL00181 172 RMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRAR 251 (287)
T ss_pred HHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 135699999999999999999999999999999865432 11123333332 13444 899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHH
Q 001746 947 YRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQ 979 (1018)
Q Consensus 947 ~~Airr~~~~~~~~~~~~~~~~~rpLT~eDF~~ 979 (1018)
.+...|+...... ......+..|+.+||.+
T Consensus 252 ~~~~~r~~~~~~~---~~~~~~l~~~~~~d~~~ 281 (287)
T CHL00181 252 MRQANRIFESGGR---VLTKADLVTIEAEDILK 281 (287)
T ss_pred HHHHHHHHcCCCC---CCCHHHHhCCCHHHHhH
Confidence 9888887654211 11223345667777743
No 59
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.83 E-value=1.6e-20 Score=217.86 Aligned_cols=155 Identities=19% Similarity=0.235 Sum_probs=112.8
Q ss_pred HHHHHHHHHhhCCCeEEEEcCchhhhhhcc--CcchHHHHHHHHHHHHhcCCC-----CEEEEeeccCCCCCcccccccc
Q 001746 472 AMEALCEVLHSTQPLIVYFPDSSLWLSRAV--PRCNRKEFVRKVEEMFDQLSG-----PVVLICGQNKNETGPKEKEKFT 544 (1018)
Q Consensus 472 ~i~~L~e~~~~~~p~Iiff~did~~~~~s~--~~~~~~~~~s~~~~~l~~l~g-----~v~vi~~~~~~~~~~~~~~~~~ 544 (1018)
.+..+|+.|...+|+||||||||.++.... ...-...+..++..+|..|+| .+.|
T Consensus 264 ~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~V------------------ 325 (438)
T PTZ00361 264 LVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKV------------------ 325 (438)
T ss_pred HHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEE------------------
Confidence 577899999999999999999999753211 111112333444455555543 3444
Q ss_pred ccccccccccCCCCchhhhhcccccCCCcchHHHHh--ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001746 545 MILPNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHK 622 (1018)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~LvIGmTnR~d~iD~aL~r--rFe~~ieI~LPdeegRl~Il~iht~~~~~~~~~~~~v~~l~~ 622 (1018)
|++||+++.+|+||+| ||+++|+|++||.++|.+||++|+.++.- ..+.+++.++.
T Consensus 326 --------------------I~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l--~~dvdl~~la~ 383 (438)
T PTZ00361 326 --------------------IMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTL--AEDVDLEEFIM 383 (438)
T ss_pred --------------------EEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCC--CcCcCHHHHHH
Confidence 4677888899999997 99999999999999999999999876531 12334555544
Q ss_pred HHhhhcCCcccccccccchhhhhHhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhhh
Q 001746 623 VLEDHELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQ 691 (1018)
Q Consensus 623 ~l~t~~~~gaDL~~Lct~a~lls~~~~~~~V~~a~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~ 691 (1018)
.+.||+||||.++|++|..++.. .++..|+.+||..|+.++...
T Consensus 384 --~t~g~sgAdI~~i~~eA~~~Alr-----------------------~~r~~Vt~~D~~~A~~~v~~~ 427 (438)
T PTZ00361 384 --AKDELSGADIKAICTEAGLLALR-----------------------ERRMKVTQADFRKAKEKVLYR 427 (438)
T ss_pred --hcCCCCHHHHHHHHHHHHHHHHH-----------------------hcCCccCHHHHHHHHHHHHhh
Confidence 88899999999999988775522 123458999999999987543
No 60
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.82 E-value=2.9e-20 Score=220.01 Aligned_cols=155 Identities=12% Similarity=0.176 Sum_probs=111.2
Q ss_pred HHHHHHHHHhhCCCeEEEEcCchhhhhh-cc-C---cchHHHHHHHHHHHHhcCCC--CEEEEeeccCCCCCcccccccc
Q 001746 472 AMEALCEVLHSTQPLIVYFPDSSLWLSR-AV-P---RCNRKEFVRKVEEMFDQLSG--PVVLICGQNKNETGPKEKEKFT 544 (1018)
Q Consensus 472 ~i~~L~e~~~~~~p~Iiff~did~~~~~-s~-~---~~~~~~~~s~~~~~l~~l~g--~v~vi~~~~~~~~~~~~~~~~~ 544 (1018)
.+..+|+.|+..+|.||||||||.+... .. . .....++++.|+..||++.+ .++
T Consensus 135 ~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~------------------- 195 (495)
T TIGR01241 135 RVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVI------------------- 195 (495)
T ss_pred HHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeE-------------------
Confidence 5678899999999999999999997532 11 0 11123445555555555542 233
Q ss_pred ccccccccccCCCCchhhhhcccccCCCcchHHHHh--ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001746 545 MILPNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHK 622 (1018)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~LvIGmTnR~d~iD~aL~r--rFe~~ieI~LPdeegRl~Il~iht~~~~~~~~~~~~v~~l~~ 622 (1018)
|||+||+++.||+||+| ||+++++|++|+.++|.+||+.|+.+... ..+.++..++.
T Consensus 196 -------------------vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~--~~~~~l~~la~ 254 (495)
T TIGR01241 196 -------------------VIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL--APDVDLKAVAR 254 (495)
T ss_pred -------------------EEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC--CcchhHHHHHH
Confidence 45788888999999998 99999999999999999999999754321 13344555555
Q ss_pred HHhhhcCCcccccccccchhhhhHhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhhh
Q 001746 623 VLEDHELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQ 691 (1018)
Q Consensus 623 ~l~t~~~~gaDL~~Lct~a~lls~~~~~~~V~~a~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~ 691 (1018)
.+.||+|+||+.||.++++.+.. .++-.|+.++|..|+.++...
T Consensus 255 --~t~G~sgadl~~l~~eA~~~a~~-----------------------~~~~~i~~~~l~~a~~~~~~~ 298 (495)
T TIGR01241 255 --RTPGFSGADLANLLNEAALLAAR-----------------------KNKTEITMNDIEEAIDRVIAG 298 (495)
T ss_pred --hCCCCCHHHHHHHHHHHHHHHHH-----------------------cCCCCCCHHHHHHHHHHHhcc
Confidence 78899999999999877654311 011247889999999887643
No 61
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.81 E-value=4.3e-20 Score=233.92 Aligned_cols=157 Identities=10% Similarity=0.100 Sum_probs=112.6
Q ss_pred HHHHHHHHHhhCCCeEEEEcCchhhhhhccCcchHHHHHHHHHHHHhcCCCCEEEEeeccCCCCCccccccccccccccc
Q 001746 472 AMEALCEVLHSTQPLIVYFPDSSLWLSRAVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPNFG 551 (1018)
Q Consensus 472 ~i~~L~e~~~~~~p~Iiff~did~~~~~s~~~~~~~~~~s~~~~~l~~l~g~v~vi~~~~~~~~~~~~~~~~~~~~~~~~ 551 (1018)
-|..+||.|++..|.||||||||.+-+.. + ....++.|+..||+..+. ++
T Consensus 1720 rIr~lFelARk~SPCIIFIDEIDaL~~~d---s-~~ltL~qLLneLDg~~~~----~s---------------------- 1769 (2281)
T CHL00206 1720 YITLQFELAKAMSPCIIWIPNIHDLNVNE---S-NYLSLGLLVNSLSRDCER----CS---------------------- 1769 (2281)
T ss_pred HHHHHHHHHHHCCCeEEEEEchhhcCCCc---c-ceehHHHHHHHhcccccc----CC----------------------
Confidence 48999999999999999999999985441 1 112355565656654211 00
Q ss_pred cccCCCCchhhhhcccccCCCcchHHHHh--ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhh--hhHHHHHHHHhhh
Q 001746 552 RLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYR--SNLNELHKVLEDH 627 (1018)
Q Consensus 552 ~~~~~~~~~~~LvIGmTnR~d~iD~aL~r--rFe~~ieI~LPdeegRl~Il~iht~~~~~~~~~~--~~v~~l~~~l~t~ 627 (1018)
.-+++|||+|||||.||+||+| |||++|+|++|+..+|.+|+.+++ ..+...... .+++.++. .|.
T Consensus 1770 -------~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl-~tkg~~L~~~~vdl~~LA~--~T~ 1839 (2281)
T CHL00206 1770 -------TRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLS-YTRGFHLEKKMFHTNGFGS--ITM 1839 (2281)
T ss_pred -------CCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHH-hhcCCCCCcccccHHHHHH--hCC
Confidence 0013456889999999999998 999999999999999999998853 222222221 24666666 899
Q ss_pred cCCcccccccccchhhhhHhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhhh
Q 001746 628 ELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQ 691 (1018)
Q Consensus 628 ~~~gaDL~~Lct~a~lls~~~~~~~V~~a~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~ 691 (1018)
||+||||.+||.+|++++..+ ++-.|+.++|..|+.+....
T Consensus 1840 GfSGADLanLvNEAaliAirq-----------------------~ks~Id~~~I~~Al~Rq~~g 1880 (2281)
T CHL00206 1840 GSNARDLVALTNEALSISITQ-----------------------KKSIIDTNTIRSALHRQTWD 1880 (2281)
T ss_pred CCCHHHHHHHHHHHHHHHHHc-----------------------CCCccCHHHHHHHHHHHHhh
Confidence 999999999999998876222 12246778888888877643
No 62
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=4.6e-19 Score=196.90 Aligned_cols=208 Identities=32% Similarity=0.534 Sum_probs=162.5
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhh
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWF 805 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~s~~~ 805 (1018)
-.|++++--..+...|+.+... ..+.. . ...|.++||+|||||||||++|+-||.++|..+-.+.+.++.-. -
T Consensus 352 ~pl~~ViL~psLe~Rie~lA~a-TaNTK----~-h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-G 424 (630)
T KOG0742|consen 352 DPLEGVILHPSLEKRIEDLAIA-TANTK----K-HQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-G 424 (630)
T ss_pred CCcCCeecCHHHHHHHHHHHHH-hcccc----c-ccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-c
Confidence 3467777666777777665433 11211 1 13466889999999999999999999999999988888776432 2
Q ss_pred hhHHHHHHHHHHHHHhcCC-eEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcH
Q 001746 806 GDAEKLTKALFSFASKLAP-VIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDD 884 (1018)
Q Consensus 806 ge~ek~I~~lF~~A~k~~P-sIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~LD~ 884 (1018)
.+....|.++|+.|+++.. -+|||||.|.++..|....-++..+..+|.||--- | .....++++.+||+|.+||.
T Consensus 425 ~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRT-G---dqSrdivLvlAtNrpgdlDs 500 (630)
T KOG0742|consen 425 AQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT-G---DQSRDIVLVLATNRPGDLDS 500 (630)
T ss_pred hHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHh-c---ccccceEEEeccCCccchhH
Confidence 3456789999999988765 48999999999999887777888888888887432 1 23457888899999999999
Q ss_pred HHHhccCccccccCCCHHHHHHHHHHHHhccCCC---------------------------CcccHHHHHHHccCCCHHH
Q 001746 885 AVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE---------------------------SGFQFNELANATEGYSGSD 937 (1018)
Q Consensus 885 aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~---------------------------~dvdl~~LA~~TeGfSgaD 937 (1018)
++-.|++..|+||+|..++|..+|..|+.++-+. .+.-+.+.|+.|+||||++
T Consensus 501 AV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGRE 580 (630)
T KOG0742|consen 501 AVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGRE 580 (630)
T ss_pred HHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHH
Confidence 9999999999999999999999999988643211 0112577899999999999
Q ss_pred HHHHHHH
Q 001746 938 LKNLCIA 944 (1018)
Q Consensus 938 L~~L~~~ 944 (1018)
|..|+..
T Consensus 581 iakLva~ 587 (630)
T KOG0742|consen 581 IAKLVAS 587 (630)
T ss_pred HHHHHHH
Confidence 9998743
No 63
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.81 E-value=5e-19 Score=195.66 Aligned_cols=237 Identities=18% Similarity=0.236 Sum_probs=171.1
Q ss_pred cccChHHHHHHHHHHHHcccCCchhhccCCCCC--CCceEEEEcCCCChHHHHHHHHHHHhC-------CcEEEEecccc
Q 001746 730 DIGALEDVKKALNELVILPMRRPDLFSRGNLLR--PCKGILLFGPPGTGKTLLAKALATEAG-------ANFISITGSTL 800 (1018)
Q Consensus 730 DIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~--p~~gVLL~GPPGTGKT~LArAIA~elg-------~~fi~Is~seL 800 (1018)
+++|++++|++|.+++.+ +..++.+.+.|+.. |..++||+||||||||++|+++|+.+. .+|+.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 589999999999998877 44555555555332 456899999999999999999998762 37999999999
Q ss_pred chhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCC-
Q 001746 801 TSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP- 879 (1018)
Q Consensus 801 ~s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p- 879 (1018)
.+.+.|..+..+..+|..|. ++||||||++.+...+.. ......+.+.|+..|+.. ...++||++++..
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~~---~~~~~~~~~~Ll~~le~~----~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDNE---RDYGQEAIEILLQVMENQ----RDDLVVILAGYKDR 171 (284)
T ss_pred hHhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCCc---cchHHHHHHHHHHHHhcC----CCCEEEEEeCCcHH
Confidence 98899988888888888763 489999999998643321 223455667777777643 2457777776532
Q ss_pred -C---CCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHc------cC-CCHHHHHHHHHHHHH
Q 001746 880 -F---DLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANAT------EG-YSGSDLKNLCIAAAY 947 (1018)
Q Consensus 880 -~---~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~T------eG-fSgaDL~~L~~~Aa~ 947 (1018)
+ .+++++.+||+..|.|+.++.+++.+|++.++.+.... ++..+..++... +. -++++++++++.|+.
T Consensus 172 ~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~ 251 (284)
T TIGR02880 172 MDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARL 251 (284)
T ss_pred HHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHH
Confidence 2 25899999999999999999999999999999875432 222233444331 22 257999999999998
Q ss_pred HHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHH
Q 001746 948 RPVQELLEEERKRGKNDAAPVLRPLKLEDFIQS 980 (1018)
Q Consensus 948 ~Airr~~~~~~~~~~~~~~~~~rpLT~eDF~~A 980 (1018)
+...|+...... ......+..|+.+|+..+
T Consensus 252 ~~~~r~~~~~~~---~~~~~~~~~~~~~d~~~~ 281 (284)
T TIGR02880 252 RQANRLFCDLDR---VLDKSDLETIDPEDLLAS 281 (284)
T ss_pred HHHHHHhcCcCC---CCCHHHHhCCCHHHHhhc
Confidence 888777543210 111233456777777543
No 64
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.81 E-value=2.6e-19 Score=172.07 Aligned_cols=130 Identities=41% Similarity=0.654 Sum_probs=116.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhhhhHHHHHHHHHHHHHhcC-CeEEEecchhhhhhccCCCcch
Q 001746 767 ILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLA-PVIIFVDEVDSLLGARGGAFEH 845 (1018)
Q Consensus 767 VLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~s~~~ge~ek~I~~lF~~A~k~~-PsIIfIDEID~L~~~r~~~~~~ 845 (1018)
|||+||||||||++|+++|+.++.+++.+++.++.+.+.++..+.+..+|..++... |+||||||+|.+.... .....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~-~~~~~ 79 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS-QPSSS 79 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC-STSSS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc-ccccc
Confidence 799999999999999999999999999999999998889999999999999999888 9999999999999887 33345
Q ss_pred HHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHHH-hccCccccccC
Q 001746 846 EATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVI-RRLPRRIYVDL 898 (1018)
Q Consensus 846 e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLl-rRFd~~I~V~l 898 (1018)
.....+.+.|+..++..... ..+++||+|||.++.++++++ +||+..+.+++
T Consensus 80 ~~~~~~~~~L~~~l~~~~~~-~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 80 SFEQRLLNQLLSLLDNPSSK-NSRVIVIATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHHTTTTT-SSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred cccccccceeeecccccccc-cccceeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 66778888999999887543 457999999999999999999 99999988864
No 65
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.81 E-value=6.5e-19 Score=192.10 Aligned_cols=218 Identities=18% Similarity=0.246 Sum_probs=157.9
Q ss_pred ccccccChHHHHHHHHHHHHcccCCchhhccCCCC--CCCceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEec
Q 001746 727 RFDDIGALEDVKKALNELVILPMRRPDLFSRGNLL--RPCKGILLFGPPGTGKTLLAKALATEA-------GANFISITG 797 (1018)
Q Consensus 727 tfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~--~p~~gVLL~GPPGTGKT~LArAIA~el-------g~~fi~Is~ 797 (1018)
.+++++|++++|++|++++.++....... ..|.. ....++||+||||||||++|+++|+.+ ..+++.+++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~-~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~ 82 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRK-EEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER 82 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHH-HcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH
Confidence 36789999999999999987764432222 22222 223579999999999999999999875 247889999
Q ss_pred cccchhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecC
Q 001746 798 STLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATN 877 (1018)
Q Consensus 798 seL~s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN 877 (1018)
+++.+.+.|+.+..+..+|..|. ++||||||+|.|.... +.......+..++..++.. ...+++|+++.
T Consensus 83 ~~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~----~~~~~~~~i~~Ll~~~e~~----~~~~~vila~~ 151 (261)
T TIGR02881 83 ADLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGG----EKDFGKEAIDTLVKGMEDN----RNEFVLILAGY 151 (261)
T ss_pred HHhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCC----ccchHHHHHHHHHHHHhcc----CCCEEEEecCC
Confidence 99999999999999999998774 5899999999996321 1223345566777777553 23455555543
Q ss_pred CC-----CCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHc---------cCCCHHHHHHHH
Q 001746 878 RP-----FDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANAT---------EGYSGSDLKNLC 942 (1018)
Q Consensus 878 ~p-----~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~T---------eGfSgaDL~~L~ 942 (1018)
.. ..+++++.+||+..+.++.++.+++.+|++.++...... ++..+..|+... ..-+++.+++++
T Consensus 152 ~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~ 231 (261)
T TIGR02881 152 SDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNII 231 (261)
T ss_pred cchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHH
Confidence 22 237889999999899999999999999999999865532 222244443321 123678999999
Q ss_pred HHHHHHHHHHHHHH
Q 001746 943 IAAAYRPVQELLEE 956 (1018)
Q Consensus 943 ~~Aa~~Airr~~~~ 956 (1018)
..|..+...|++.+
T Consensus 232 e~a~~~~~~r~~~~ 245 (261)
T TIGR02881 232 EKAIRRQAVRLLDK 245 (261)
T ss_pred HHHHHHHHHHHhcc
Confidence 99888877776543
No 66
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.79 E-value=2.3e-19 Score=190.46 Aligned_cols=156 Identities=20% Similarity=0.246 Sum_probs=114.1
Q ss_pred HHHHHHHHHhhCCCeEEEEcCchhh-hhhccCc--chHHHHHHHHHHHHhcCC-CCEEEEeeccCCCCCccccccccccc
Q 001746 472 AMEALCEVLHSTQPLIVYFPDSSLW-LSRAVPR--CNRKEFVRKVEEMFDQLS-GPVVLICGQNKNETGPKEKEKFTMIL 547 (1018)
Q Consensus 472 ~i~~L~e~~~~~~p~Iiff~did~~-~~~s~~~--~~~~~~~s~~~~~l~~l~-g~v~vi~~~~~~~~~~~~~~~~~~~~ 547 (1018)
-|..||+-|++..|.|||+||+|.+ +.|--|+ -.-.++|+.|++-||++- +-+||
T Consensus 198 ~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVv--------------------- 256 (368)
T COG1223 198 RIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVV--------------------- 256 (368)
T ss_pred HHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceE---------------------
Confidence 6889999999999999999999985 4442222 012345555555555543 22333
Q ss_pred cccccccCCCCchhhhhcccccCCCcchHHHHhccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhh
Q 001746 548 PNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYNLFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLEDH 627 (1018)
Q Consensus 548 ~~~~~~~~~~~~~~~LvIGmTnR~d~iD~aL~rrFe~~ieI~LPdeegRl~Il~iht~~~~~~~~~~~~v~~l~~~l~t~ 627 (1018)
.|++|||++++|+|++.||+.+|||.||+++.|+.|+....+++- ...+.+++.++. +|+
T Consensus 257 ----------------tIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~P--lpv~~~~~~~~~--~t~ 316 (368)
T COG1223 257 ----------------TIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFP--LPVDADLRYLAA--KTK 316 (368)
T ss_pred ----------------EEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCC--CccccCHHHHHH--HhC
Confidence 468899999999999999999999999999999999998865542 234455777766 899
Q ss_pred cCCcccccccccchhhhhHhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhh
Q 001746 628 ELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKE 690 (1018)
Q Consensus 628 ~~~gaDL~~Lct~a~lls~~~~~~~V~~a~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p 690 (1018)
|+||-||. ++++..|+-+.+ -.++=+|..+||..|+++..+
T Consensus 317 g~SgRdik--------------ekvlK~aLh~Ai--------~ed~e~v~~edie~al~k~r~ 357 (368)
T COG1223 317 GMSGRDIK--------------EKVLKTALHRAI--------AEDREKVEREDIEKALKKERK 357 (368)
T ss_pred CCCchhHH--------------HHHHHHHHHHHH--------HhchhhhhHHHHHHHHHhhcc
Confidence 99998884 344555554444 244556889999999986443
No 67
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.8e-18 Score=183.43 Aligned_cols=158 Identities=13% Similarity=0.198 Sum_probs=118.8
Q ss_pred HHHHHHHHHhhCCCeEEEEcCchhh----hhhccCcchHHHHHHHHHHHHhcCCCCEEEEeeccCCCCCccccccccccc
Q 001746 472 AMEALCEVLHSTQPLIVYFPDSSLW----LSRAVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMIL 547 (1018)
Q Consensus 472 ~i~~L~e~~~~~~p~Iiff~did~~----~~~s~~~~~~~~~~s~~~~~l~~l~g~v~vi~~~~~~~~~~~~~~~~~~~~ 547 (1018)
++..-|-.|+...|.|||+||+|.. +.+.+.- -.+.-.+.+++|+.|||=- ++ +
T Consensus 252 LVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~G--DREVQRTMLELLNQLDGFs--------s~--~---------- 309 (424)
T KOG0652|consen 252 LVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAG--DREVQRTMLELLNQLDGFS--------SD--D---------- 309 (424)
T ss_pred HHHHHHHHhhccCCeEEEEechhhhccccccccccc--cHHHHHHHHHHHHhhcCCC--------Cc--c----------
Confidence 7777888899999999999999986 3333222 2355667788888888510 00 0
Q ss_pred cccccccCCCCchhhhhcccccCCCcchHHHHh--ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHh
Q 001746 548 PNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLE 625 (1018)
Q Consensus 548 ~~~~~~~~~~~~~~~LvIGmTnR~d~iD~aL~r--rFe~~ieI~LPdeegRl~Il~iht~~~~~~~~~~~~v~~l~~~l~ 625 (1018)
.+=||.+|||-|.+|+||+| |++++||||+|++++|.+|+.||-.+|. ...+.|.++|+. .
T Consensus 310 -------------~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMn--v~~DvNfeELaR--s 372 (424)
T KOG0652|consen 310 -------------RVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMN--VSDDVNFEELAR--S 372 (424)
T ss_pred -------------ceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcC--CCCCCCHHHHhh--c
Confidence 02256889999999999999 9999999999999999999999965543 234456677766 7
Q ss_pred hhcCCcccccccccchhhhhHhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhhh
Q 001746 626 DHELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQ 691 (1018)
Q Consensus 626 t~~~~gaDL~~Lct~a~lls~~~~~~~V~~a~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~ 691 (1018)
|-+|.||.+.++|.+|-.++- ..+.-.|+.+|||.++.+++..
T Consensus 373 TddFNGAQcKAVcVEAGMiAL-----------------------Rr~atev~heDfmegI~eVqak 415 (424)
T KOG0652|consen 373 TDDFNGAQCKAVCVEAGMIAL-----------------------RRGATEVTHEDFMEGILEVQAK 415 (424)
T ss_pred ccccCchhheeeehhhhHHHH-----------------------hcccccccHHHHHHHHHHHHHh
Confidence 778889999999988765441 1223457889999999888753
No 68
>CHL00176 ftsH cell division protein; Validated
Probab=99.77 E-value=1.1e-18 Score=210.95 Aligned_cols=154 Identities=15% Similarity=0.228 Sum_probs=109.5
Q ss_pred HHHHHHHHHhhCCCeEEEEcCchhhhhh-cc----CcchHHHHHHHHHHHHhcCCC--CEEEEeeccCCCCCcccccccc
Q 001746 472 AMEALCEVLHSTQPLIVYFPDSSLWLSR-AV----PRCNRKEFVRKVEEMFDQLSG--PVVLICGQNKNETGPKEKEKFT 544 (1018)
Q Consensus 472 ~i~~L~e~~~~~~p~Iiff~did~~~~~-s~----~~~~~~~~~s~~~~~l~~l~g--~v~vi~~~~~~~~~~~~~~~~~ 544 (1018)
.+..+|+.|+...|.||||||||.+..+ .. ......+.+..|+..||+..+ +|+
T Consensus 263 ~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~Vi------------------- 323 (638)
T CHL00176 263 RVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVI------------------- 323 (638)
T ss_pred HHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCee-------------------
Confidence 4677899999999999999999998532 11 111223334444444444332 233
Q ss_pred ccccccccccCCCCchhhhhcccccCCCcchHHHHh--ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001746 545 MILPNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHK 622 (1018)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~LvIGmTnR~d~iD~aL~r--rFe~~ieI~LPdeegRl~Il~iht~~~~~~~~~~~~v~~l~~ 622 (1018)
+||+||+++.+|+||+| ||+++++|++|+.++|.+||+.|+.+ .....+.++..++.
T Consensus 324 -------------------VIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~--~~~~~d~~l~~lA~ 382 (638)
T CHL00176 324 -------------------VIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARN--KKLSPDVSLELIAR 382 (638)
T ss_pred -------------------EEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhh--cccchhHHHHHHHh
Confidence 45788888899999998 99999999999999999999999765 22223344555554
Q ss_pred HHhhhcCCcccccccccchhhhhHhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhh
Q 001746 623 VLEDHELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKE 690 (1018)
Q Consensus 623 ~l~t~~~~gaDL~~Lct~a~lls~~~~~~~V~~a~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p 690 (1018)
.+.||+|+||..||.++++.+.. .++-.|+.++|..|+.++..
T Consensus 383 --~t~G~sgaDL~~lvneAal~a~r-----------------------~~~~~It~~dl~~Ai~rv~~ 425 (638)
T CHL00176 383 --RTPGFSGADLANLLNEAAILTAR-----------------------RKKATITMKEIDTAIDRVIA 425 (638)
T ss_pred --cCCCCCHHHHHHHHHHHHHHHHH-----------------------hCCCCcCHHHHHHHHHHHHh
Confidence 88899999999998877765411 11224788999999988753
No 69
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.77 E-value=1.5e-18 Score=204.31 Aligned_cols=123 Identities=14% Similarity=0.193 Sum_probs=90.3
Q ss_pred HHHHHHHHHhh----CCCeEEEEcCchhhhhh-cc--CcchHHHHHHHHHHHHhcCC--CCEEEEeeccCCCCCcccccc
Q 001746 472 AMEALCEVLHS----TQPLIVYFPDSSLWLSR-AV--PRCNRKEFVRKVEEMFDQLS--GPVVLICGQNKNETGPKEKEK 542 (1018)
Q Consensus 472 ~i~~L~e~~~~----~~p~Iiff~did~~~~~-s~--~~~~~~~~~s~~~~~l~~l~--g~v~vi~~~~~~~~~~~~~~~ 542 (1018)
.+..+|+.|+. .+|+||||||+|.++.. +. .......+++.|+..||++. ++|+||
T Consensus 273 ~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI--------------- 337 (512)
T TIGR03689 273 QIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVI--------------- 337 (512)
T ss_pred HHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEE---------------
Confidence 45667777765 48999999999998642 11 22233456777777777775 444544
Q ss_pred ccccccccccccCCCCchhhhhcccccCCCcchHHHHh--ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHH
Q 001746 543 FTMILPNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNEL 620 (1018)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~LvIGmTnR~d~iD~aL~r--rFe~~ieI~LPdeegRl~Il~iht~~~~~~~~~~~~v~~l 620 (1018)
|+||++++||+||+| ||+++|+|++|+.++|.+||++|+...... ..+
T Consensus 338 -----------------------~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l---~~~---- 387 (512)
T TIGR03689 338 -----------------------GASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPL---DAD---- 387 (512)
T ss_pred -----------------------eccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCc---hHH----
Confidence 788889999999999 999999999999999999999997542211 222
Q ss_pred HHHHhhhcCCcccccccccch
Q 001746 621 HKVLEDHELSCTDLLHVNTDG 641 (1018)
Q Consensus 621 ~~~l~t~~~~gaDL~~Lct~a 641 (1018)
+....|+.++++.++|.++
T Consensus 388 --l~~~~g~~~a~~~al~~~a 406 (512)
T TIGR03689 388 --LAEFDGDREATAAALIQRA 406 (512)
T ss_pred --HHHhcCCCHHHHHHHHHHH
Confidence 2235688899998887654
No 70
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1e-18 Score=185.82 Aligned_cols=151 Identities=13% Similarity=0.176 Sum_probs=109.1
Q ss_pred HHHHHHHHHhhCCCeEEEEcCchhh----hhhccCcchHHHHHHHHHHHHhcCC-----CCEEEEeeccCCCCCcccccc
Q 001746 472 AMEALCEVLHSTQPLIVYFPDSSLW----LSRAVPRCNRKEFVRKVEEMFDQLS-----GPVVLICGQNKNETGPKEKEK 542 (1018)
Q Consensus 472 ~i~~L~e~~~~~~p~Iiff~did~~----~~~s~~~~~~~~~~s~~~~~l~~l~-----g~v~vi~~~~~~~~~~~~~~~ 542 (1018)
.+..|||-|+.....||||||||.. +.-..-.. ++.-.+.++++.+|| |++-|+
T Consensus 258 mvrelf~martkkaciiffdeidaiggarfddg~ggd--nevqrtmleli~qldgfdprgnikvl--------------- 320 (435)
T KOG0729|consen 258 MVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGD--NEVQRTMLELINQLDGFDPRGNIKVL--------------- 320 (435)
T ss_pred HHHHHHHHhcccceEEEEeeccccccCccccCCCCCc--HHHHHHHHHHHHhccCCCCCCCeEEE---------------
Confidence 7889999999999999999999975 21111111 244445556655555 444333
Q ss_pred ccccccccccccCCCCchhhhhcccccCCCcchHHHHh--ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhh--HH
Q 001746 543 FTMILPNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSN--LN 618 (1018)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~LvIGmTnR~d~iD~aL~r--rFe~~ieI~LPdeegRl~Il~iht~~~~~~~~~~~~--v~ 618 (1018)
=+|||||-+|+||+| |+++++||.|||-|||.+||+||++.|. -+.+ .+
T Consensus 321 -----------------------matnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksms----verdir~e 373 (435)
T KOG0729|consen 321 -----------------------MATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMS----VERDIRFE 373 (435)
T ss_pred -----------------------eecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccc----cccchhHH
Confidence 368888889999998 9999999999999999999999976553 1222 33
Q ss_pred HHHHHHhhhcCCcccccccccchhhhhHhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhhh
Q 001746 619 ELHKVLEDHELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQ 691 (1018)
Q Consensus 619 ~l~~~l~t~~~~gaDL~~Lct~a~lls~~~~~~~V~~a~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~ 691 (1018)
.++. .-.|-.||||+.+||+|-.++...- +-..+-+||..|++++...
T Consensus 374 llar--lcpnstgaeirsvcteagmfairar-----------------------rk~atekdfl~av~kvvkg 421 (435)
T KOG0729|consen 374 LLAR--LCPNSTGAEIRSVCTEAGMFAIRAR-----------------------RKVATEKDFLDAVNKVVKG 421 (435)
T ss_pred HHHh--hCCCCcchHHHHHHHHhhHHHHHHH-----------------------hhhhhHHHHHHHHHHHHHH
Confidence 4444 5668899999999999877652221 1124668999999998765
No 71
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=2.8e-18 Score=203.00 Aligned_cols=155 Identities=14% Similarity=0.200 Sum_probs=114.8
Q ss_pred HHHHHHHHHhhCCCeEEEEcCchhhhhh--c---cCcchHHHHHHHHHHHHhcCCC--CEEEEeeccCCCCCcccccccc
Q 001746 472 AMEALCEVLHSTQPLIVYFPDSSLWLSR--A---VPRCNRKEFVRKVEEMFDQLSG--PVVLICGQNKNETGPKEKEKFT 544 (1018)
Q Consensus 472 ~i~~L~e~~~~~~p~Iiff~did~~~~~--s---~~~~~~~~~~s~~~~~l~~l~g--~v~vi~~~~~~~~~~~~~~~~~ 544 (1018)
-+..|||.|+++.|.|||+||||..-+. . -....+++..+.++.-||+..+ .|||
T Consensus 230 RVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviv------------------ 291 (596)
T COG0465 230 RVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIV------------------ 291 (596)
T ss_pred HHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEE------------------
Confidence 5677999999999999999999975221 1 1233444555555555565553 2344
Q ss_pred ccccccccccCCCCchhhhhcccccCCCcchHHHHh--ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001746 545 MILPNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHK 622 (1018)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~LvIGmTnR~d~iD~aL~r--rFe~~ieI~LPdeegRl~Il~iht~~~~~~~~~~~~v~~l~~ 622 (1018)
|++|||||-.|+||+| |||+++.|++||..+|.+|++.|+++ ++...+.++..++.
T Consensus 292 --------------------iaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~--~~l~~~Vdl~~iAr 349 (596)
T COG0465 292 --------------------IAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKN--KPLAEDVDLKKIAR 349 (596)
T ss_pred --------------------EecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhc--CCCCCcCCHHHHhh
Confidence 4778889999999999 99999999999999999999999532 22223444555555
Q ss_pred HHhhhcCCcccccccccchhhhhHhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhhh
Q 001746 623 VLEDHELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQ 691 (1018)
Q Consensus 623 ~l~t~~~~gaDL~~Lct~a~lls~~~~~~~V~~a~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~ 691 (1018)
.|-||+||||..|+-+|++++.. .++..|++.+|..|++++.-.
T Consensus 350 --~tpGfsGAdL~nl~NEAal~aar-----------------------~n~~~i~~~~i~ea~drv~~G 393 (596)
T COG0465 350 --GTPGFSGADLANLLNEAALLAAR-----------------------RNKKEITMRDIEEAIDRVIAG 393 (596)
T ss_pred --hCCCcccchHhhhHHHHHHHHHH-----------------------hcCeeEeccchHHHHHHHhcC
Confidence 89999999999999888887611 234567888999999988754
No 72
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.75 E-value=3.5e-18 Score=194.82 Aligned_cols=152 Identities=14% Similarity=0.237 Sum_probs=106.3
Q ss_pred HHHHHHHHHhhCCCeEEEEcCchhhhhhcc--CcchHHHHHHHHHHH---HhcCC--CCEEEEeeccCCCCCcccccccc
Q 001746 472 AMEALCEVLHSTQPLIVYFPDSSLWLSRAV--PRCNRKEFVRKVEEM---FDQLS--GPVVLICGQNKNETGPKEKEKFT 544 (1018)
Q Consensus 472 ~i~~L~e~~~~~~p~Iiff~did~~~~~s~--~~~~~~~~~s~~~~~---l~~l~--g~v~vi~~~~~~~~~~~~~~~~~ 544 (1018)
.+..+|+.++..+|.||||||+|.+..... ..+...+...++..+ |++++ +++.||
T Consensus 203 ~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI----------------- 265 (364)
T TIGR01242 203 LVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVI----------------- 265 (364)
T ss_pred HHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEE-----------------
Confidence 566788889899999999999999753211 111111222233333 44442 345554
Q ss_pred ccccccccccCCCCchhhhhcccccCCCcchHHHHh--ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001746 545 MILPNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHK 622 (1018)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~LvIGmTnR~d~iD~aL~r--rFe~~ieI~LPdeegRl~Il~iht~~~~~~~~~~~~v~~l~~ 622 (1018)
++||+++.+|++|+| ||++.++|++|+.++|.+||++|+.++.- ..+.+.+.++.
T Consensus 266 ---------------------~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l--~~~~~~~~la~ 322 (364)
T TIGR01242 266 ---------------------AATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKL--AEDVDLEAIAK 322 (364)
T ss_pred ---------------------EecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCC--CccCCHHHHHH
Confidence 667777889999987 99999999999999999999999754431 12235666665
Q ss_pred HHhhhcCCcccccccccchhhhhHhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHh
Q 001746 623 VLEDHELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRL 688 (1018)
Q Consensus 623 ~l~t~~~~gaDL~~Lct~a~lls~~~~~~~V~~a~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l 688 (1018)
.+.||+|+||.++|.+|...+..+ ++-.|+.+||..|+.++
T Consensus 323 --~t~g~sg~dl~~l~~~A~~~a~~~-----------------------~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 323 --MTEGASGADLKAICTEAGMFAIRE-----------------------ERDYVTMDDFIKAVEKV 363 (364)
T ss_pred --HcCCCCHHHHHHHHHHHHHHHHHh-----------------------CCCccCHHHHHHHHHHh
Confidence 778999999999998877655211 12358899999998765
No 73
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=8e-18 Score=177.98 Aligned_cols=159 Identities=11% Similarity=0.155 Sum_probs=108.3
Q ss_pred HHHHHHHHHhhCCCeEEEEcCchhhhhh--ccCcchHHHHHHHHHHHHhcCCCCEEEEeeccCCCCCccccccccccccc
Q 001746 472 AMEALCEVLHSTQPLIVYFPDSSLWLSR--AVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPN 549 (1018)
Q Consensus 472 ~i~~L~e~~~~~~p~Iiff~did~~~~~--s~~~~~~~~~~s~~~~~l~~l~g~v~vi~~~~~~~~~~~~~~~~~~~~~~ 549 (1018)
.+..+|..|+.+.|+|||+||||..... -.|-.--.+.-..|.++|..|||=-.
T Consensus 236 mvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq------------------------ 291 (408)
T KOG0727|consen 236 MVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQ------------------------ 291 (408)
T ss_pred HHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCc------------------------
Confidence 6777899999999999999999986221 11222223344456677777775110
Q ss_pred cccccCCCCchhhhhcccccCCCcchHHHHh--ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhh
Q 001746 550 FGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLEDH 627 (1018)
Q Consensus 550 ~~~~~~~~~~~~~LvIGmTnR~d~iD~aL~r--rFe~~ieI~LPdeegRl~Il~iht~~~~~~~~~~~~v~~l~~~l~t~ 627 (1018)
+-|.-||=+|||.|-+|+||+| |++++|||||||--.+.-+|.--|.+|. ..++++.-..+.+--
T Consensus 292 ---------~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~----ls~~vdle~~v~rpd 358 (408)
T KOG0727|consen 292 ---------TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMN----LSDEVDLEDLVARPD 358 (408)
T ss_pred ---------ccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhccc----CCcccCHHHHhcCcc
Confidence 0111244568888889999998 9999999999999888888887766654 223333333344555
Q ss_pred cCCcccccccccchhhhhHhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhh
Q 001746 628 ELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKE 690 (1018)
Q Consensus 628 ~~~gaDL~~Lct~a~lls~~~~~~~V~~a~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p 690 (1018)
..+|||+.++|.+|-+++ +..++..|..+||+.|......
T Consensus 359 kis~adi~aicqeagm~a-----------------------vr~nryvvl~kd~e~ay~~~vk 398 (408)
T KOG0727|consen 359 KISGADINAICQEAGMLA-----------------------VRENRYVVLQKDFEKAYKTVVK 398 (408)
T ss_pred ccchhhHHHHHHHHhHHH-----------------------HHhcceeeeHHHHHHHHHhhcC
Confidence 679999999998776644 1233455778899988766543
No 74
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=5.3e-18 Score=184.12 Aligned_cols=155 Identities=14% Similarity=0.162 Sum_probs=116.4
Q ss_pred HHHHHHHHHhhCCCeEEEEcCchhhhhh--ccCcchHHHHHHHHHHHHhcCC-----CCEEEEeeccCCCCCcccccccc
Q 001746 472 AMEALCEVLHSTQPLIVYFPDSSLWLSR--AVPRCNRKEFVRKVEEMFDQLS-----GPVVLICGQNKNETGPKEKEKFT 544 (1018)
Q Consensus 472 ~i~~L~e~~~~~~p~Iiff~did~~~~~--s~~~~~~~~~~s~~~~~l~~l~-----g~v~vi~~~~~~~~~~~~~~~~~ 544 (1018)
+|..-|..|+.++|+|||+||||-...| +.--+.-.+|.-||-+++++|+ |+|=+|+++
T Consensus 213 lIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~Imat-------------- 278 (388)
T KOG0651|consen 213 LIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMAT-------------- 278 (388)
T ss_pred HHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEec--------------
Confidence 8899999999999999999999986322 2223344567889999999998 677677555
Q ss_pred ccccccccccCCCCchhhhhcccccCCCcchHHHHh--ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001746 545 MILPNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHK 622 (1018)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~LvIGmTnR~d~iD~aL~r--rFe~~ieI~LPdeegRl~Il~iht~~~~~~~~~~~~v~~l~~ 622 (1018)
||||-+|+||+| |.|+.++||||++.+|+.|++||..........+ -+.+
T Consensus 279 ------------------------NrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid--~eai-- 330 (388)
T KOG0651|consen 279 ------------------------NRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEID--DEAI-- 330 (388)
T ss_pred ------------------------CCccccchhhcCCccccceeccCCcchhhceeeEeecccccccccccc--HHHH--
Confidence 455567777777 9999999999999999999999977666555554 2222
Q ss_pred HHhhhcCCcccccccccchhhhhHhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhhh
Q 001746 623 VLEDHELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQ 691 (1018)
Q Consensus 623 ~l~t~~~~gaDL~~Lct~a~lls~~~~~~~V~~a~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~ 691 (1018)
+.-.-+|+|+|++..||++-+++ +...+..+-.+||+.++.++...
T Consensus 331 vK~~d~f~gad~rn~~tEag~Fa-----------------------~~~~~~~vl~Ed~~k~vrk~~~~ 376 (388)
T KOG0651|consen 331 LKLVDGFNGADLRNVCTEAGMFA-----------------------IPEERDEVLHEDFMKLVRKQADA 376 (388)
T ss_pred HHHHhccChHHHhhhcccccccc-----------------------cchhhHHHhHHHHHHHHHHHHHH
Confidence 23455888999999999887644 12234445678999998776544
No 75
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.72 E-value=1.6e-17 Score=202.21 Aligned_cols=157 Identities=10% Similarity=0.114 Sum_probs=113.4
Q ss_pred HHHHHHHHHhhCCCeEEEEcCchhhhhhcc-----CcchHHHHHHHHHHHHhcCCCCEEEEeeccCCCCCcccccccccc
Q 001746 472 AMEALCEVLHSTQPLIVYFPDSSLWLSRAV-----PRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMI 546 (1018)
Q Consensus 472 ~i~~L~e~~~~~~p~Iiff~did~~~~~s~-----~~~~~~~~~s~~~~~l~~l~g~v~vi~~~~~~~~~~~~~~~~~~~ 546 (1018)
.+..+|+.++..+|.||||||||.+..+.. ....+.++++.|+..||+..++-
T Consensus 232 ~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~---------------------- 289 (644)
T PRK10733 232 RVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE---------------------- 289 (644)
T ss_pred HHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCC----------------------
Confidence 456788889999999999999999843311 11223455555555555544311
Q ss_pred ccccccccCCCCchhhhhcccccCCCcchHHHHh--ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Q 001746 547 LPNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVL 624 (1018)
Q Consensus 547 ~~~~~~~~~~~~~~~~LvIGmTnR~d~iD~aL~r--rFe~~ieI~LPdeegRl~Il~iht~~~~~~~~~~~~v~~l~~~l 624 (1018)
.+++||+||+++.||+||+| ||+++++|++||.++|.+||+.|+.+.. ...+.++..++.
T Consensus 290 --------------~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~--l~~~~d~~~la~-- 351 (644)
T PRK10733 290 --------------GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP--LAPDIDAAIIAR-- 351 (644)
T ss_pred --------------CeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCC--CCCcCCHHHHHh--
Confidence 12356888999999999998 9999999999999999999999975432 122344555555
Q ss_pred hhhcCCcccccccccchhhhhHhhhhhhHhhcccccccccCCCCccCCceeeCHHHHHHHHHHhhhh
Q 001746 625 EDHELSCTDLLHVNTDGVILTKQRAEKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQ 691 (1018)
Q Consensus 625 ~t~~~~gaDL~~Lct~a~lls~~~~~~~V~~a~~~~l~~~~~~~v~~~kv~V~~~df~~Al~~l~p~ 691 (1018)
.+.||+||||..||.+|++.+.. .++-.|+..||..|++++.+.
T Consensus 352 ~t~G~sgadl~~l~~eAa~~a~r-----------------------~~~~~i~~~d~~~a~~~v~~g 395 (644)
T PRK10733 352 GTPGFSGADLANLVNEAALFAAR-----------------------GNKRVVSMVEFEKAKDKIMMG 395 (644)
T ss_pred hCCCCCHHHHHHHHHHHHHHHHH-----------------------cCCCcccHHHHHHHHHHHhcc
Confidence 78899999999999888775521 122357889999999887654
No 76
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=7.2e-17 Score=183.61 Aligned_cols=219 Identities=21% Similarity=0.301 Sum_probs=169.2
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhh
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWF 805 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~s~~~ 805 (1018)
.+|+-+.--.+.|+.|.+-+...++..+.|.+.| ....+|.|||||||||||+++.|+|++++..++.+..++....
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvG-kawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n-- 274 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVG-KAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLD-- 274 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcC-cchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCc--
Confidence 7899999999999999999999999999999988 5678999999999999999999999999999999988776443
Q ss_pred hhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcc-----h-HHHHHHHHHHHhhhccccccCCCcEEEEEecCCC
Q 001746 806 GDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFE-----H-EATRRMRNEFMSAWDGLRSKESQKILILGATNRP 879 (1018)
Q Consensus 806 ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~-----~-e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p 879 (1018)
.+ ++.+...+ ...+||+|+|||+=+.-+..... . ...+-.+..||+.+||+-+..+.--+||.|||.+
T Consensus 275 --~d--Lr~LL~~t--~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~ 348 (457)
T KOG0743|consen 275 --SD--LRHLLLAT--PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHK 348 (457)
T ss_pred --HH--HHHHHHhC--CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCCh
Confidence 22 55555443 34589999999987643322111 1 1223457889999999988776667888899999
Q ss_pred CCCcHHHHh--ccCccccccCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHccC--CCHHHHHHHHHH---HHHHHHHH
Q 001746 880 FDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEG--YSGSDLKNLCIA---AAYRPVQE 952 (1018)
Q Consensus 880 ~~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeG--fSgaDL~~L~~~---Aa~~Airr 952 (1018)
+.|||||+| |+|..|+++.-+.++-..+++.|+.... +..-+.+|.+..++ .|++|+....-. .+..++++
T Consensus 349 EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~lk~ 426 (457)
T KOG0743|consen 349 EKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEELMKNKNDADVALKG 426 (457)
T ss_pred hhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHHHhhccccHHHHHHH
Confidence 999999999 9999999999999999999999987533 12224455554444 599998865432 34455555
Q ss_pred HHH
Q 001746 953 LLE 955 (1018)
Q Consensus 953 ~~~ 955 (1018)
+++
T Consensus 427 Lv~ 429 (457)
T KOG0743|consen 427 LVE 429 (457)
T ss_pred HHH
Confidence 543
No 77
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.70 E-value=5.5e-15 Score=184.62 Aligned_cols=202 Identities=20% Similarity=0.225 Sum_probs=135.4
Q ss_pred cccChHHHHHHHHHHHHcccCCchhhccCCC---CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchh
Q 001746 730 DIGALEDVKKALNELVILPMRRPDLFSRGNL---LRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSK 803 (1018)
Q Consensus 730 DIgGle~vk~~L~e~V~~pL~~~elf~~~gl---~~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~s~ 803 (1018)
.|.|++...+.+.+.+... +.++ .+|...+||+||+|+|||++|+++|..+ ...++.++++++...
T Consensus 567 ~v~GQ~~Av~~v~~~i~~~--------~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~ 638 (852)
T TIGR03345 567 RVIGQDHALEAIAERIRTA--------RAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEA 638 (852)
T ss_pred eEcChHHHHHHHHHHHHHH--------hcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhh
Confidence 5788999888888887542 1121 1233348999999999999999999998 457899998776322
Q ss_pred ------------hhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhcccccc------
Q 001746 804 ------------WFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSK------ 865 (1018)
Q Consensus 804 ------------~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~------ 865 (1018)
|+|..+. ..+....++.+.+||+|||||..- ..+.+.|+..++...-.
T Consensus 639 ~~~~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka~------------~~v~~~Llq~ld~g~l~d~~Gr~ 704 (852)
T TIGR03345 639 HTVSRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKAH------------PDVLELFYQVFDKGVMEDGEGRE 704 (852)
T ss_pred hhhccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhcC------------HHHHHHHHHHhhcceeecCCCcE
Confidence 2221110 123344456778999999998652 23455666666543211
Q ss_pred -CCCcEEEEEecCCCC-----------------------------CCcHHHHhccCccccccCCCHHHHHHHHHHHHhcc
Q 001746 866 -ESQKILILGATNRPF-----------------------------DLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHE 915 (1018)
Q Consensus 866 -~~~~VlVIaTTN~p~-----------------------------~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~ 915 (1018)
.-.+.+||.|||... .+.|++++|++ .|.|.+.+.++..+|+...+...
T Consensus 705 vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~l 783 (852)
T TIGR03345 705 IDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDRI 783 (852)
T ss_pred EeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHHHHHHHHHHHHHHH
Confidence 124678888988421 14567788886 78899999999999998877541
Q ss_pred --------CCC---CcccHHHHHHHccC--CCHHHHHHHHHHHHHHHHHHHH
Q 001746 916 --------SLE---SGFQFNELANATEG--YSGSDLKNLCIAAAYRPVQELL 954 (1018)
Q Consensus 916 --------~l~---~dvdl~~LA~~TeG--fSgaDL~~L~~~Aa~~Airr~~ 954 (1018)
++. ++..++.|+....+ |-.+.|+++++.-...++.+.+
T Consensus 784 ~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~~~ 835 (852)
T TIGR03345 784 ARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQI 835 (852)
T ss_pred HHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 221 22235667776643 5688999999888887777654
No 78
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.68 E-value=1.9e-16 Score=177.81 Aligned_cols=122 Identities=11% Similarity=0.068 Sum_probs=82.3
Q ss_pred HHHHHHHHHhh-----CCCeEEEEcCchhhhhh--ccCcchHHHHH-HHHHHHHhcCCCCEEEEeeccCCCCCccccccc
Q 001746 472 AMEALCEVLHS-----TQPLIVYFPDSSLWLSR--AVPRCNRKEFV-RKVEEMFDQLSGPVVLICGQNKNETGPKEKEKF 543 (1018)
Q Consensus 472 ~i~~L~e~~~~-----~~p~Iiff~did~~~~~--s~~~~~~~~~~-s~~~~~l~~l~g~v~vi~~~~~~~~~~~~~~~~ 543 (1018)
+|..+|++|+. .+|+||||||||.++.+ +.+.....+++ .+|..+||++. .|.+. |..+.. +..
T Consensus 195 ~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~-~v~l~-G~w~~~--~~~---- 266 (413)
T PLN00020 195 LIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPT-NVSLG-GDWREK--EEI---- 266 (413)
T ss_pred HHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCc-ccccc-cccccc--ccC----
Confidence 78888988864 48999999999987533 22333335665 55555555422 23332 221100 000
Q ss_pred cccccccccccCCCCchhhhhcccccCCCcchHHHHh--ccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Q 001746 544 TMILPNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELH 621 (1018)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~LvIGmTnR~d~iD~aL~r--rFe~~ieI~LPdeegRl~Il~iht~~~~~~~~~~~~v~~l~ 621 (1018)
-...||++||||+.||+||+| |||+.+ .+|+.++|.+||++|++++ .+...++..|.
T Consensus 267 ----------------~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~---~l~~~dv~~Lv 325 (413)
T PLN00020 267 ----------------PRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDD---GVSREDVVKLV 325 (413)
T ss_pred ----------------CCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccC---CCCHHHHHHHH
Confidence 024689999999999999999 999964 6999999999999997653 44556666665
Q ss_pred H
Q 001746 622 K 622 (1018)
Q Consensus 622 ~ 622 (1018)
.
T Consensus 326 ~ 326 (413)
T PLN00020 326 D 326 (413)
T ss_pred H
Confidence 5
No 79
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.68 E-value=8.5e-15 Score=183.03 Aligned_cols=209 Identities=20% Similarity=0.216 Sum_probs=138.3
Q ss_pred cccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchh---
Q 001746 730 DIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSK--- 803 (1018)
Q Consensus 730 DIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~s~--- 803 (1018)
.|.|++..++.+...+...... + ....+|...+||+||+|+|||+||+++|+.+ +.+++.++++++...
T Consensus 510 ~v~GQ~~ai~~l~~~i~~~~~g---l--~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~ 584 (821)
T CHL00095 510 RIIGQDEAVVAVSKAIRRARVG---L--KNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTV 584 (821)
T ss_pred cCcChHHHHHHHHHHHHHHhhc---c--cCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccH
Confidence 5788999999998877532100 0 0112344568999999999999999999987 468999998876321
Q ss_pred --hhhhHHHH-----HHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhcccc-------ccCCCc
Q 001746 804 --WFGDAEKL-----TKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR-------SKESQK 869 (1018)
Q Consensus 804 --~~ge~ek~-----I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~-------~~~~~~ 869 (1018)
..|..... ...+....++.+.+||+|||+|.+. ..+.+.|+..|+... ...-.+
T Consensus 585 ~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~------------~~v~~~Llq~le~g~~~d~~g~~v~~~~ 652 (821)
T CHL00095 585 SKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAH------------PDIFNLLLQILDDGRLTDSKGRTIDFKN 652 (821)
T ss_pred HHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCC------------HHHHHHHHHHhccCceecCCCcEEecCc
Confidence 12211111 1234455556666999999999862 335567777776421 112346
Q ss_pred EEEEEecCCCCC-------------------------------------CcHHHHhccCccccccCCCHHHHHHHHHHHH
Q 001746 870 ILILGATNRPFD-------------------------------------LDDAVIRRLPRRIYVDLPDAENRMKILRIFL 912 (1018)
Q Consensus 870 VlVIaTTN~p~~-------------------------------------LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L 912 (1018)
.+||.|||.... +.|+++.|++.+|.|.+.+.++..+|+...+
T Consensus 653 ~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l 732 (821)
T CHL00095 653 TLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIML 732 (821)
T ss_pred eEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHH
Confidence 888999874311 2356788999999999999999999998877
Q ss_pred hcc-------CCC---CcccHHHHHHHc--cCCCHHHHHHHHHHHHHHHHHHHHH
Q 001746 913 AHE-------SLE---SGFQFNELANAT--EGYSGSDLKNLCIAAAYRPVQELLE 955 (1018)
Q Consensus 913 ~~~-------~l~---~dvdl~~LA~~T--eGfSgaDL~~L~~~Aa~~Airr~~~ 955 (1018)
... ++. ++.....|+... ..|-.+.|+.+++.-...++.+.+-
T Consensus 733 ~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~~~~l 787 (821)
T CHL00095 733 KNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAEEVL 787 (821)
T ss_pred HHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHH
Confidence 632 111 222355666652 2455788888888887777766543
No 80
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.67 E-value=3.2e-15 Score=165.76 Aligned_cols=220 Identities=20% Similarity=0.211 Sum_probs=144.2
Q ss_pred ccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhhh
Q 001746 727 RFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFG 806 (1018)
Q Consensus 727 tfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~s~~~g 806 (1018)
+|+|++|.+++++.|..++...... ..++.++||+||||||||+||+++|++++.++..+.++.+.. .+
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~---------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~--~~ 70 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR---------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK--PG 70 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc---------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC--ch
Confidence 6899999999999999887542211 123467999999999999999999999998877665543221 11
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHh--hhcccc-----ccCCCcEEEEEecCCC
Q 001746 807 DAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS--AWDGLR-----SKESQKILILGATNRP 879 (1018)
Q Consensus 807 e~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~--~Ldgl~-----~~~~~~VlVIaTTN~p 879 (1018)
. +...+.. -..+.||||||++.+.... .+....+++..-. .++.-. .....++.+|++||++
T Consensus 71 ~----l~~~l~~--~~~~~vl~iDEi~~l~~~~-----~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~ 139 (305)
T TIGR00635 71 D----LAAILTN--LEEGDVLFIDEIHRLSPAV-----EELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRA 139 (305)
T ss_pred h----HHHHHHh--cccCCEEEEehHhhhCHHH-----HHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCc
Confidence 1 1222222 1356899999999985321 1111111111100 000000 0012347889999999
Q ss_pred CCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 001746 880 FDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEER 958 (1018)
Q Consensus 880 ~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeGfSgaDL~~L~~~Aa~~Airr~~~~~~ 958 (1018)
..+++++++||...+.++.|+.+++.++++..+....+. ++..+..|++.+.|+. +.+..++..+...|...
T Consensus 140 ~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~~~a~~~------ 212 (305)
T TIGR00635 140 GMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVRDFAQVR------ 212 (305)
T ss_pred cccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHHHc------
Confidence 999999999998888999999999999999888755443 3445778999988854 66677777654332211
Q ss_pred hcCCCCCCCCccCCCHHHHHHHHHhh
Q 001746 959 KRGKNDAAPVLRPLKLEDFIQSKAKV 984 (1018)
Q Consensus 959 ~~~~~~~~~~~rpLT~eDF~~Al~kv 984 (1018)
....++.+++..++..+
T Consensus 213 ---------~~~~it~~~v~~~l~~l 229 (305)
T TIGR00635 213 ---------GQKIINRDIALKALEML 229 (305)
T ss_pred ---------CCCCcCHHHHHHHHHHh
Confidence 00246666666666654
No 81
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.66 E-value=1.2e-15 Score=188.50 Aligned_cols=224 Identities=26% Similarity=0.314 Sum_probs=158.3
Q ss_pred ccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 001746 727 RFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA----------GANFISIT 796 (1018)
Q Consensus 727 tfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~el----------g~~fi~Is 796 (1018)
.+++++|.++....+.+.+.. +...++||+||||||||++|+++|+.+ +..++.++
T Consensus 180 ~l~~~igr~~ei~~~~~~L~~--------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~ 245 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLCR--------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLD 245 (731)
T ss_pred CCCcccCcHHHHHHHHHHHhc--------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEec
Confidence 577899999888877665421 123579999999999999999999987 67899999
Q ss_pred ccccc--hhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEE
Q 001746 797 GSTLT--SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILG 874 (1018)
Q Consensus 797 ~seL~--s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIa 874 (1018)
+..+. .++.|+.+..++.+|..+.+..++||||||||.|.+......... ...+.|...+ ....+.+||
T Consensus 246 ~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~---~~~~~L~~~l------~~g~i~~Ig 316 (731)
T TIGR02639 246 MGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSM---DASNLLKPAL------SSGKLRCIG 316 (731)
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccH---HHHHHHHHHH------hCCCeEEEE
Confidence 88887 468899999999999999888899999999999987643221111 1122232222 234688999
Q ss_pred ecCCC-----CCCcHHHHhccCccccccCCCHHHHHHHHHHHHhcc----CC-CCcccHHHHHHHccCCCHH-----HHH
Q 001746 875 ATNRP-----FDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHE----SL-ESGFQFNELANATEGYSGS-----DLK 939 (1018)
Q Consensus 875 TTN~p-----~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~----~l-~~dvdl~~LA~~TeGfSga-----DL~ 939 (1018)
+|+.. ...|+++.|||. .|.|+.|+.+++.+||+.+.... .+ -.+..+..++..+..|-+. --.
T Consensus 317 aTt~~e~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai 395 (731)
T TIGR02639 317 STTYEEYKNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAI 395 (731)
T ss_pred ecCHHHHHHHhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHH
Confidence 99863 458999999995 79999999999999999776542 11 2445577778777766433 223
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHHhhC
Q 001746 940 NLCIAAAYRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQSKAKVG 985 (1018)
Q Consensus 940 ~L~~~Aa~~Airr~~~~~~~~~~~~~~~~~rpLT~eDF~~Al~kv~ 985 (1018)
.++.+|+... ++ . ........|+.+|+..++..+.
T Consensus 396 ~lld~a~a~~--~~------~---~~~~~~~~v~~~~i~~~i~~~t 430 (731)
T TIGR02639 396 DVIDEAGASF--RL------R---PKAKKKANVSVKDIENVVAKMA 430 (731)
T ss_pred HHHHHhhhhh--hc------C---cccccccccCHHHHHHHHHHHh
Confidence 4444443211 00 0 0000124589999999988874
No 82
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.66 E-value=1.6e-14 Score=181.19 Aligned_cols=207 Identities=21% Similarity=0.276 Sum_probs=139.0
Q ss_pred ccccChHHHHHHHHHHHHcccCCchhhccCCC---CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccch
Q 001746 729 DDIGALEDVKKALNELVILPMRRPDLFSRGNL---LRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTS 802 (1018)
Q Consensus 729 dDIgGle~vk~~L~e~V~~pL~~~elf~~~gl---~~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~s 802 (1018)
..|.|.+...+.+...+... +.++ .+|...+||+||+|||||++|++||..+ +.+++.++++++..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~ 636 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRS--------RAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYME 636 (852)
T ss_pred cccCCChHHHHHHHHHHHHH--------hccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcc
Confidence 35788999998888887542 1111 2345669999999999999999999987 56899999887643
Q ss_pred hh-----hhhHHHH-----HHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhcccc-c------c
Q 001746 803 KW-----FGDAEKL-----TKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR-S------K 865 (1018)
Q Consensus 803 ~~-----~ge~ek~-----I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~-~------~ 865 (1018)
.. .|..... ...+....++.+.+|||||||+.+- ..+.+.|+..|+... . .
T Consensus 637 ~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~------------~~v~~~Ll~~l~~g~l~d~~g~~v 704 (852)
T TIGR03346 637 KHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAH------------PDVFNVLLQVLDDGRLTDGQGRTV 704 (852)
T ss_pred cchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCC------------HHHHHHHHHHHhcCceecCCCeEE
Confidence 21 1111000 1223344455666899999999762 334566666664321 0 1
Q ss_pred CCCcEEEEEecCCCCC-------------------------CcHHHHhccCccccccCCCHHHHHHHHHHHHhc------
Q 001746 866 ESQKILILGATNRPFD-------------------------LDDAVIRRLPRRIYVDLPDAENRMKILRIFLAH------ 914 (1018)
Q Consensus 866 ~~~~VlVIaTTN~p~~-------------------------LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~------ 914 (1018)
.-.+.+||+|||.... +.|+++.|++.++.|.+++.+...+|+...+..
T Consensus 705 d~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~ 784 (852)
T TIGR03346 705 DFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLA 784 (852)
T ss_pred ecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 1246788899987321 346777799999999999999999998887752
Q ss_pred -cCCC---CcccHHHHHHHc--cCCCHHHHHHHHHHHHHHHHHHHHH
Q 001746 915 -ESLE---SGFQFNELANAT--EGYSGSDLKNLCIAAAYRPVQELLE 955 (1018)
Q Consensus 915 -~~l~---~dvdl~~LA~~T--eGfSgaDL~~L~~~Aa~~Airr~~~ 955 (1018)
.++. ++..++.|+... ..+..+.|+++++.....++.+.+-
T Consensus 785 ~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~~l 831 (852)
T TIGR03346 785 ERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKKIL 831 (852)
T ss_pred HCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 1111 223355666653 2466799999999999888877543
No 83
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.66 E-value=9.6e-15 Score=164.45 Aligned_cols=225 Identities=20% Similarity=0.183 Sum_probs=152.1
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhh
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWF 805 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~s~~~ 805 (1018)
.+|+++.|.++.++.+..++...... ..++.++||+||||||||++|+++|++++..+..++.+.+..
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~~---------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~--- 89 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKKR---------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK--- 89 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHhc---------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC---
Confidence 47999999999999998887542111 234568999999999999999999999999888776654321
Q ss_pred hhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHH--hhhccccc-----cCCCcEEEEEecCC
Q 001746 806 GDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFM--SAWDGLRS-----KESQKILILGATNR 878 (1018)
Q Consensus 806 ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL--~~Ldgl~~-----~~~~~VlVIaTTN~ 878 (1018)
...+..++... ..++||||||||.+.... .+.....++... ..++.-.. ..-.++.+|++|++
T Consensus 90 ---~~~l~~~l~~l--~~~~vl~IDEi~~l~~~~-----~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~ 159 (328)
T PRK00080 90 ---PGDLAAILTNL--EEGDVLFIDEIHRLSPVV-----EEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTR 159 (328)
T ss_pred ---hHHHHHHHHhc--ccCCEEEEecHhhcchHH-----HHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCC
Confidence 12233333332 357899999999984321 111111111110 00111000 01124778999999
Q ss_pred CCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 001746 879 PFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEE 957 (1018)
Q Consensus 879 p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeGfSgaDL~~L~~~Aa~~Airr~~~~~ 957 (1018)
+..+++++++||...+.++.|+.+++.+|++..+...++. ++..+..|+..+.| +++.+..++..+...+..+
T Consensus 160 ~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G-~pR~a~~~l~~~~~~a~~~----- 233 (328)
T PRK00080 160 AGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRG-TPRIANRLLRRVRDFAQVK----- 233 (328)
T ss_pred cccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHc-----
Confidence 9999999999998889999999999999999988866554 33447889999988 4477777776655443321
Q ss_pred HhcCCCCCCCCccCCCHHHHHHHHHhhCCCc
Q 001746 958 RKRGKNDAAPVLRPLKLEDFIQSKAKVGPSV 988 (1018)
Q Consensus 958 ~~~~~~~~~~~~rpLT~eDF~~Al~kv~PSv 988 (1018)
....|+.+++..++..+....
T Consensus 234 ----------~~~~I~~~~v~~~l~~~~~~~ 254 (328)
T PRK00080 234 ----------GDGVITKEIADKALDMLGVDE 254 (328)
T ss_pred ----------CCCCCCHHHHHHHHHHhCCCc
Confidence 013578888888887765443
No 84
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.66 E-value=8.7e-16 Score=162.94 Aligned_cols=189 Identities=24% Similarity=0.329 Sum_probs=120.4
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhh
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWF 805 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~s~~~ 805 (1018)
.+|+|++|+++++..+.-++.....+ ..+..++|||||||+|||+||+.||++++.+|..++++.+-. .
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~~r---------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k--~ 89 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAKKR---------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK--A 89 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHHCT---------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S--C
T ss_pred CCHHHccCcHHHHhhhHHHHHHHHhc---------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh--H
Confidence 47999999999999998776543221 124468999999999999999999999999999988765422 1
Q ss_pred hhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhcccc--------c------cCCCcEE
Q 001746 806 GDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR--------S------KESQKIL 871 (1018)
Q Consensus 806 ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~--------~------~~~~~Vl 871 (1018)
++.. .++... ....|||||||++|... +...|+..|+... . -+-.++.
T Consensus 90 ~dl~----~il~~l--~~~~ILFIDEIHRlnk~------------~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FT 151 (233)
T PF05496_consen 90 GDLA----AILTNL--KEGDILFIDEIHRLNKA------------QQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFT 151 (233)
T ss_dssp HHHH----HHHHT----TT-EEEECTCCC--HH------------HHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----E
T ss_pred HHHH----HHHHhc--CCCcEEEEechhhccHH------------HHHHHHHHhccCeEEEEeccccccceeeccCCCce
Confidence 2222 222222 24689999999998422 2223333333211 0 0113678
Q ss_pred EEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHccCCCHHHHHHHHHH
Q 001746 872 ILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLKNLCIA 944 (1018)
Q Consensus 872 VIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeGfSgaDL~~L~~~ 944 (1018)
+||||++...|...|+.||.....+...+.++..+|++......++. ++....+||..+.| +++-..+|++.
T Consensus 152 ligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~r 224 (233)
T PF05496_consen 152 LIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRR 224 (233)
T ss_dssp EEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHH
T ss_pred EeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHH
Confidence 99999999999999999999888899999999999999776655554 33347889999998 77755555543
No 85
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.64 E-value=1.2e-13 Score=172.91 Aligned_cols=207 Identities=19% Similarity=0.261 Sum_probs=132.7
Q ss_pred cccccChHHHHHHHHHHHHcccCCchhhccCCCC---CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc
Q 001746 728 FDDIGALEDVKKALNELVILPMRRPDLFSRGNLL---RPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLT 801 (1018)
Q Consensus 728 fdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~---~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~ 801 (1018)
...|.|.+...+.+...+... +.++. +|...+||+||+|||||++|++||..+ +.+++.++++++.
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~ 638 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRS--------RAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFM 638 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHH--------HhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhh
Confidence 446889999988888887542 11111 233468999999999999999999987 5679999988764
Q ss_pred hhh-----hhhHHHHH----HHHHHH-HHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhcccc-------c
Q 001746 802 SKW-----FGDAEKLT----KALFSF-ASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR-------S 864 (1018)
Q Consensus 802 s~~-----~ge~ek~I----~~lF~~-A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~-------~ 864 (1018)
... +|.....+ ...+.. .+..+.+||||||++.+- ..+.+.|+..++... .
T Consensus 639 ~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~------------~~v~~~Ll~ile~g~l~d~~gr~ 706 (857)
T PRK10865 639 EKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAH------------PDVFNILLQVLDDGRLTDGQGRT 706 (857)
T ss_pred hhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCC------------HHHHHHHHHHHhhCceecCCceE
Confidence 321 11100000 112223 334455899999998762 234455666554221 0
Q ss_pred cCCCcEEEEEecCCCC-------------------------CCcHHHHhccCccccccCCCHHHHHHHHHHHHhcc----
Q 001746 865 KESQKILILGATNRPF-------------------------DLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHE---- 915 (1018)
Q Consensus 865 ~~~~~VlVIaTTN~p~-------------------------~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~---- 915 (1018)
..-.+.+||+|||... .+.|+++.|++..+.|.+++.+...+|++.++...
T Consensus 707 vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl 786 (857)
T PRK10865 707 VDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRL 786 (857)
T ss_pred EeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1223567888988631 24578889999999999999999999988887642
Q ss_pred ---CCCCccc---HHHHHHHc--cCCCHHHHHHHHHHHHHHHHHHHH
Q 001746 916 ---SLESGFQ---FNELANAT--EGYSGSDLKNLCIAAAYRPVQELL 954 (1018)
Q Consensus 916 ---~l~~dvd---l~~LA~~T--eGfSgaDL~~L~~~Aa~~Airr~~ 954 (1018)
++.-.++ +..|+... ..|-.+.|+.+++.-...++.+.+
T Consensus 787 ~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~~la~~i 833 (857)
T PRK10865 787 EERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQI 833 (857)
T ss_pred HhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHHHHHHHHH
Confidence 2221222 44444422 123467899998888877776654
No 86
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.64 E-value=5.5e-15 Score=166.11 Aligned_cols=167 Identities=27% Similarity=0.419 Sum_probs=123.0
Q ss_pred cccccccChHHHHH---HHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch
Q 001746 726 VRFDDIGALEDVKK---ALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS 802 (1018)
Q Consensus 726 vtfdDIgGle~vk~---~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~s 802 (1018)
.+++|++|++.+.. -|..+|.. ....+++||||||||||+||+.||...+.+|..+++..
T Consensus 21 ~~lde~vGQ~HLlg~~~~lrr~v~~--------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~--- 83 (436)
T COG2256 21 KSLDEVVGQEHLLGEGKPLRRAVEA--------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT--- 83 (436)
T ss_pred CCHHHhcChHhhhCCCchHHHHHhc--------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc---
Confidence 46889999887763 34444421 12367999999999999999999999999999998743
Q ss_pred hhhhhHHHHHHHHHHHHHhcC----CeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEec--
Q 001746 803 KWFGDAEKLTKALFSFASKLA----PVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGAT-- 876 (1018)
Q Consensus 803 ~~~ge~ek~I~~lF~~A~k~~----PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTT-- 876 (1018)
..-+-++.+|+.|++.. ..|||||||+++.... ...||-.+ ++..|++||||
T Consensus 84 ----~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~Q------------QD~lLp~v------E~G~iilIGATTE 141 (436)
T COG2256 84 ----SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQ------------QDALLPHV------ENGTIILIGATTE 141 (436)
T ss_pred ----ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhh------------hhhhhhhh------cCCeEEEEeccCC
Confidence 23467888898886544 4899999999984332 22455444 45578888876
Q ss_pred CCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHh--ccCCC------CcccHHHHHHHccC
Q 001746 877 NRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLA--HESLE------SGFQFNELANATEG 932 (1018)
Q Consensus 877 N~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~--~~~l~------~dvdl~~LA~~TeG 932 (1018)
|..+.|.++|++|+ +++.+...+.++..++++..+. ..++. ++..+..|+..+.|
T Consensus 142 NPsF~ln~ALlSR~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G 204 (436)
T COG2256 142 NPSFELNPALLSRA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG 204 (436)
T ss_pred CCCeeecHHHhhhh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc
Confidence 67788999999999 6788999999999999998443 22232 23345667777665
No 87
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.64 E-value=2.9e-15 Score=186.11 Aligned_cols=231 Identities=17% Similarity=0.242 Sum_probs=154.1
Q ss_pred cccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc--------
Q 001746 730 DIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT-------- 801 (1018)
Q Consensus 730 DIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~-------- 801 (1018)
++.|++++++.+.+++.....+. . .....+||+||||||||++|++||+.++.+|+.+++..+.
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~------~--~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRG------K--MKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhc------C--CCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 58899999999999876543221 1 1224699999999999999999999999999999765432
Q ss_pred -hhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhcc-----cc------ccCCCc
Q 001746 802 -SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDG-----LR------SKESQK 869 (1018)
Q Consensus 802 -s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldg-----l~------~~~~~~ 869 (1018)
..|.|.....+.+.|..+....| ||||||||.+....++. ..+.|+..|+. +. ..+..+
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~~--------~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~ 463 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRGD--------PASALLEVLDPEQNNAFSDHYLDVPFDLSK 463 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCCC--------HHHHHHHhcCHHhcCccccccCCceeccCC
Confidence 23556666667778888766555 89999999997543221 12344554442 10 012247
Q ss_pred EEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHh-----ccCCC------CcccHHHHHH-HccCCCHHH
Q 001746 870 ILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLA-----HESLE------SGFQFNELAN-ATEGYSGSD 937 (1018)
Q Consensus 870 VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~-----~~~l~------~dvdl~~LA~-~TeGfSgaD 937 (1018)
+++|+|||.++.+++++++|| ..|.++.|+.+++.+|++.++. ...+. ++..+..|++ .+..+..++
T Consensus 464 v~~I~TtN~~~~i~~~L~~R~-~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~ 542 (775)
T TIGR00763 464 VIFIATANSIDTIPRPLLDRM-EVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRN 542 (775)
T ss_pred EEEEEecCCchhCCHHHhCCe-eEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChH
Confidence 899999999999999999999 4789999999999999988762 11221 2223454554 233445577
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHH
Q 001746 938 LKNLCIAAAYRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQSK 981 (1018)
Q Consensus 938 L~~L~~~Aa~~Airr~~~~~~~~~~~~~~~~~rpLT~eDF~~Al 981 (1018)
|+..+...+..+..+++..... .........++.+++..-+
T Consensus 543 l~r~i~~~~~~~~~~~~~~~~~---~~~~~~~v~i~~~~~~~~l 583 (775)
T TIGR00763 543 LERQIEKICRKAAVKLVEQGEK---KKSEAESVVITPDNLKKYL 583 (775)
T ss_pred HHHHHHHHHHHHHHHHHhccCc---ccCCcccccCCHHHHHHhc
Confidence 8777777666665555431110 0001112357777766554
No 88
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.63 E-value=1.2e-14 Score=170.32 Aligned_cols=213 Identities=18% Similarity=0.278 Sum_probs=143.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhcc
Q 001746 765 KGILLFGPPGTGKTLLAKALATEA-----GANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGAR 839 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~el-----g~~fi~Is~seL~s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r 839 (1018)
.+++||||||+|||+|++++|+++ +..++++++.++...+..........-|....+ .+.+|+||||+.+.+..
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~ 227 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGKE 227 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCCH
Confidence 569999999999999999999997 567889999887766554433222223333333 57899999999986432
Q ss_pred CCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCC---CcHHHHhccCc--cccccCCCHHHHHHHHHHHHhc
Q 001746 840 GGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFD---LDDAVIRRLPR--RIYVDLPDAENRMKILRIFLAH 914 (1018)
Q Consensus 840 ~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~---LD~aLlrRFd~--~I~V~lPd~eeR~eILk~~L~~ 914 (1018)
....+|+..++.+... .+.+||+++..|.. +++.+++||.. .+.+..|+.++|.+|++..+..
T Consensus 228 ----------~~~~~l~~~~n~l~~~--~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~ 295 (450)
T PRK00149 228 ----------RTQEEFFHTFNALHEA--GKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEE 295 (450)
T ss_pred ----------HHHHHHHHHHHHHHHC--CCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHH
Confidence 1123444444444322 23466666666655 67899999964 6788999999999999999886
Q ss_pred cCCC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHHhhCCCcchhhh
Q 001746 915 ESLE-SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAYDAA 993 (1018)
Q Consensus 915 ~~l~-~dvdl~~LA~~TeGfSgaDL~~L~~~Aa~~Airr~~~~~~~~~~~~~~~~~rpLT~eDF~~Al~kv~PSvs~~~~ 993 (1018)
.++. ++..++.||..+.| +.++|..++......+... .++||++.+.+++..+...-.....
T Consensus 296 ~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~~~~~----------------~~~it~~~~~~~l~~~~~~~~~~~~ 358 (450)
T PRK00149 296 EGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAYASLT----------------GKPITLELAKEALKDLLAAQKKKIT 358 (450)
T ss_pred cCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHHHHhh----------------CCCCCHHHHHHHHHHhhccCCCCCC
Confidence 5543 44457888888775 7788877776554332211 1568999999999877432222222
Q ss_pred hHHHHHHHHHHhCC
Q 001746 994 SMNELRKWNEQYGE 1007 (1018)
Q Consensus 994 ~m~el~kW~diyG~ 1007 (1018)
.-.-...-.+.||.
T Consensus 359 ~~~i~~~v~~~~~i 372 (450)
T PRK00149 359 IENIQKVVAEYYNI 372 (450)
T ss_pred HHHHHHHHHHHcCC
Confidence 33345577888884
No 89
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.62 E-value=2e-14 Score=166.27 Aligned_cols=214 Identities=18% Similarity=0.275 Sum_probs=138.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhc
Q 001746 764 CKGILLFGPPGTGKTLLAKALATEA-----GANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGA 838 (1018)
Q Consensus 764 ~~gVLL~GPPGTGKT~LArAIA~el-----g~~fi~Is~seL~s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~ 838 (1018)
..+++||||+|+|||+|++++++++ +..++++++.++...+...........|....+ .+.+|+||||+.+.+.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~ 214 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR-SVDLLLIDDIQFLAGK 214 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH-hCCEEEEehhhhhcCC
Confidence 3569999999999999999999987 578899998877655443322111122322222 3689999999998643
Q ss_pred cCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCC---CcHHHHhccCc--cccccCCCHHHHHHHHHHHHh
Q 001746 839 RGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFD---LDDAVIRRLPR--RIYVDLPDAENRMKILRIFLA 913 (1018)
Q Consensus 839 r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~---LD~aLlrRFd~--~I~V~lPd~eeR~eILk~~L~ 913 (1018)
. ....+|+..++.+... .+.+||+++..|.. +++.+++||.. .+.++.|+.++|..|++..+.
T Consensus 215 ~----------~~~~~l~~~~n~~~~~--~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~ 282 (405)
T TIGR00362 215 E----------RTQEEFFHTFNALHEN--GKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAE 282 (405)
T ss_pred H----------HHHHHHHHHHHHHHHC--CCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 2 1123344444443222 24566666666654 56789999964 688999999999999999998
Q ss_pred ccCCC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHHhhCCCcchhh
Q 001746 914 HESLE-SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAYDA 992 (1018)
Q Consensus 914 ~~~l~-~dvdl~~LA~~TeGfSgaDL~~L~~~Aa~~Airr~~~~~~~~~~~~~~~~~rpLT~eDF~~Al~kv~PSvs~~~ 992 (1018)
..++. ++..++.||....+ +.++|..++......+... .++||++.+.+++......-....
T Consensus 283 ~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a~~~----------------~~~it~~~~~~~L~~~~~~~~~~i 345 (405)
T TIGR00362 283 EEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAYASLT----------------GKPITLELAKEALKDLLRAKKKEI 345 (405)
T ss_pred HcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHh----------------CCCCCHHHHHHHHHHhccccCCCC
Confidence 66554 44557888888775 7788888777654433211 146788888888776532222112
Q ss_pred hhHHHHHHHHHHhCC
Q 001746 993 ASMNELRKWNEQYGE 1007 (1018)
Q Consensus 993 ~~m~el~kW~diyG~ 1007 (1018)
....-...-.+.||-
T Consensus 346 t~~~I~~~Va~~~~v 360 (405)
T TIGR00362 346 TIENIQEVVAKYYNI 360 (405)
T ss_pred CHHHHHHHHHHHcCC
Confidence 222233345566663
No 90
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.60 E-value=1.2e-14 Score=178.94 Aligned_cols=197 Identities=22% Similarity=0.256 Sum_probs=141.4
Q ss_pred ccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 001746 727 RFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA----------GANFISIT 796 (1018)
Q Consensus 727 tfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~el----------g~~fi~Is 796 (1018)
.++.+.|.++....+.+.+.. +...++||+||||||||++|+++|... +..++.++
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r--------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~ 249 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCR--------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhc--------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc
Confidence 466788888888888775522 122568999999999999999999875 45566666
Q ss_pred ccccc--hhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEE
Q 001746 797 GSTLT--SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILG 874 (1018)
Q Consensus 797 ~seL~--s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIa 874 (1018)
...++ ..+.|+.+..++.+|..+.+..++|||||||+.|++.+........ +.+.|...+ ....+.||+
T Consensus 250 ~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d---~~nlLkp~L------~~g~i~vIg 320 (758)
T PRK11034 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVD---AANLIKPLL------SSGKIRVIG 320 (758)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHH---HHHHHHHHH------hCCCeEEEe
Confidence 66655 3577889999999999998888999999999999876542211111 222222222 234699999
Q ss_pred ecCCCC-----CCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCCCccc-----HHHHHHHccC-----CCHHHHH
Q 001746 875 ATNRPF-----DLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLESGFQ-----FNELANATEG-----YSGSDLK 939 (1018)
Q Consensus 875 TTN~p~-----~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvd-----l~~LA~~TeG-----fSgaDL~ 939 (1018)
+|+.++ ..|+++.|||. .|.|+.|+.+++..||+.+........++. +..++..+.. +-+....
T Consensus 321 ATt~~E~~~~~~~D~AL~rRFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKai 399 (758)
T PRK11034 321 STTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAI 399 (758)
T ss_pred cCChHHHHHHhhccHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHH
Confidence 998764 58999999995 799999999999999998776544433333 3444443433 4456777
Q ss_pred HHHHHHHH
Q 001746 940 NLCIAAAY 947 (1018)
Q Consensus 940 ~L~~~Aa~ 947 (1018)
.++.+|+.
T Consensus 400 dlldea~a 407 (758)
T PRK11034 400 DVIDEAGA 407 (758)
T ss_pred HHHHHHHH
Confidence 78888764
No 91
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=1.3e-13 Score=164.58 Aligned_cols=188 Identities=20% Similarity=0.235 Sum_probs=135.5
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA--------------- 790 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~--------------- 790 (1018)
.+|+||+|.+.+++.|...+.. .+.++.+||+||+|+|||++|+.+|+.+++
T Consensus 13 qtFddVIGQe~vv~~L~~al~~-------------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG 79 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQ-------------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCG 79 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHh-------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCc
Confidence 5799999999999999998743 133467899999999999999999999865
Q ss_pred --------------cEEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHH
Q 001746 791 --------------NFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFM 856 (1018)
Q Consensus 791 --------------~fi~Is~seL~s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL 856 (1018)
.++.++..+- ..+.+....+..+..........|+||||+|.|.. ...|.||
T Consensus 80 ~C~sC~~I~aG~hpDviEIdAas~--~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~------------~AaNALL 145 (700)
T PRK12323 80 QCRACTEIDAGRFVDYIEMDAASN--RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN------------HAFNAML 145 (700)
T ss_pred ccHHHHHHHcCCCCcceEeccccc--CCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH------------HHHHHHH
Confidence 2334433311 11222223332222222223457999999999842 2356777
Q ss_pred hhhccccccCCCcEEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCCC-cccHHHHHHHccCCCH
Q 001746 857 SAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLES-GFQFNELANATEGYSG 935 (1018)
Q Consensus 857 ~~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~~-dvdl~~LA~~TeGfSg 935 (1018)
..|+.- ...+++|.+|+.+..|.+.|++|| ..+.|..++.++..+.|+.++..+++.. +..+..|+..+.| +.
T Consensus 146 KTLEEP----P~~v~FILaTtep~kLlpTIrSRC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~G-s~ 219 (700)
T PRK12323 146 KTLEEP----PEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQG-SM 219 (700)
T ss_pred HhhccC----CCCceEEEEeCChHhhhhHHHHHH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 766542 346788888999999999999999 7889999999999999999888766543 3346778888887 77
Q ss_pred HHHHHHHHHHH
Q 001746 936 SDLKNLCIAAA 946 (1018)
Q Consensus 936 aDL~~L~~~Aa 946 (1018)
++..+++..+.
T Consensus 220 RdALsLLdQai 230 (700)
T PRK12323 220 RDALSLTDQAI 230 (700)
T ss_pred HHHHHHHHHHH
Confidence 88888876654
No 92
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=1.4e-13 Score=160.83 Aligned_cols=184 Identities=17% Similarity=0.178 Sum_probs=133.7
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 791 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~-------------- 791 (1018)
.+|+|++|.+.+...|...+.. .+.+..+||+||||||||++|+++|+.+++.
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~-------------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC 81 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKS-------------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSC 81 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHH
Confidence 5799999999999999888743 1233569999999999999999999998652
Q ss_pred ----------EEEEeccccchhhhhhHHHHHHHHHHHHH----hcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHh
Q 001746 792 ----------FISITGSTLTSKWFGDAEKLTKALFSFAS----KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 857 (1018)
Q Consensus 792 ----------fi~Is~seL~s~~~ge~ek~I~~lF~~A~----k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~ 857 (1018)
++.+++..- .....++.+...+. .....|+||||+|.|. ....+.|+.
T Consensus 82 ~~i~~g~~~dviEIdaas~------~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls------------~~A~NALLK 143 (484)
T PRK14956 82 LEITKGISSDVLEIDAASN------RGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT------------DQSFNALLK 143 (484)
T ss_pred HHHHccCCccceeechhhc------ccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC------------HHHHHHHHH
Confidence 333333211 11223344333332 2345699999999983 223567777
Q ss_pred hhccccccCCCcEEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHccCCCHH
Q 001746 858 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGS 936 (1018)
Q Consensus 858 ~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeGfSga 936 (1018)
.++. +...+++|.+|+.++.|.+++++|+ ..+.|..++.++..++++.++..+++. ++..+..||..++| +.+
T Consensus 144 tLEE----Pp~~viFILaTte~~kI~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G-d~R 217 (484)
T PRK14956 144 TLEE----PPAHIVFILATTEFHKIPETILSRC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG-SVR 217 (484)
T ss_pred Hhhc----CCCceEEEeecCChhhccHHHHhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-hHH
Confidence 6644 2346888888888999999999999 578899999999999999998877654 44567888888887 667
Q ss_pred HHHHHHHHHH
Q 001746 937 DLKNLCIAAA 946 (1018)
Q Consensus 937 DL~~L~~~Aa 946 (1018)
+..+++..++
T Consensus 218 dAL~lLeq~i 227 (484)
T PRK14956 218 DMLSFMEQAI 227 (484)
T ss_pred HHHHHHHHHH
Confidence 7777776543
No 93
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=1.4e-13 Score=166.13 Aligned_cols=185 Identities=21% Similarity=0.223 Sum_probs=136.0
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA--------------- 790 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~--------------- 790 (1018)
.+|+||+|.+.+++.|...+.. .+.++.+||+||+|||||++|+++|+.+++
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~-------------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sC 79 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDG-------------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRAC 79 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHH
Confidence 5799999999999999988743 123466899999999999999999998864
Q ss_pred ---------cEEEEeccccchhhhhhHHHHHHHHHHHHHh----cCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHh
Q 001746 791 ---------NFISITGSTLTSKWFGDAEKLTKALFSFASK----LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 857 (1018)
Q Consensus 791 ---------~fi~Is~seL~s~~~ge~ek~I~~lF~~A~k----~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~ 857 (1018)
.++.++..+- .....++.+...+.. ....||||||+|.|.. ...|.|+.
T Consensus 80 r~I~~G~h~DviEIDAas~------rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~------------~A~NALLK 141 (830)
T PRK07003 80 REIDEGRFVDYVEMDAASN------RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN------------HAFNAMLK 141 (830)
T ss_pred HHHhcCCCceEEEeccccc------ccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH------------HHHHHHHH
Confidence 2344443221 112234444444332 2347999999999842 22456666
Q ss_pred hhccccccCCCcEEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHccCCCHH
Q 001746 858 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGS 936 (1018)
Q Consensus 858 ~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeGfSga 936 (1018)
.|+.. ...+.+|.+||.+..|.+.|++|| ..+.|..++.++..++|+.++..+++. ++..+..|++.+.| +.+
T Consensus 142 tLEEP----P~~v~FILaTtd~~KIp~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~G-smR 215 (830)
T PRK07003 142 TLEEP----PPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQG-SMR 215 (830)
T ss_pred HHHhc----CCCeEEEEEECChhhccchhhhhe-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 66543 346888889999999999999999 788999999999999999999877764 44557888888887 667
Q ss_pred HHHHHHHHHHH
Q 001746 937 DLKNLCIAAAY 947 (1018)
Q Consensus 937 DL~~L~~~Aa~ 947 (1018)
+..+++..+..
T Consensus 216 dALsLLdQAia 226 (830)
T PRK07003 216 DALSLTDQAIA 226 (830)
T ss_pred HHHHHHHHHHH
Confidence 77777766553
No 94
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.54 E-value=1.8e-13 Score=160.29 Aligned_cols=226 Identities=18% Similarity=0.249 Sum_probs=145.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccC
Q 001746 764 CKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARG 840 (1018)
Q Consensus 764 ~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~ 840 (1018)
.++++||||+|+|||+|++|+++++ +..++++++..+...+.......-...|.... ..+.||+||||+.+.++..
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~~ 219 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKGA 219 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCChh
Confidence 3579999999999999999999986 68889998877655443322211122344433 3568999999999854321
Q ss_pred CCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCC---CCcHHHHhccC--ccccccCCCHHHHHHHHHHHHhcc
Q 001746 841 GAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPF---DLDDAVIRRLP--RRIYVDLPDAENRMKILRIFLAHE 915 (1018)
Q Consensus 841 ~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~---~LD~aLlrRFd--~~I~V~lPd~eeR~eILk~~L~~~ 915 (1018)
...+|+..++.+.. ..+.+|++++..|. .+++.+++||. ..+.+..|+.++|..|++..+...
T Consensus 220 ----------~qeelf~l~N~l~~--~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~ 287 (445)
T PRK12422 220 ----------TQEEFFHTFNSLHT--EGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEAL 287 (445)
T ss_pred ----------hHHHHHHHHHHHHH--CCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHc
Confidence 11233333333321 12455555555554 46789999996 567788899999999999998876
Q ss_pred CCC-CcccHHHHHHHccCCCHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHHhhCCCcch-hh
Q 001746 916 SLE-SGFQFNELANATEGYSGSDLKNLCIAAAYR-PVQELLEEERKRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAY-DA 992 (1018)
Q Consensus 916 ~l~-~dvdl~~LA~~TeGfSgaDL~~L~~~Aa~~-Airr~~~~~~~~~~~~~~~~~rpLT~eDF~~Al~kv~PSvs~-~~ 992 (1018)
++. ++..++.||....+ ..++|..++...+.. |...+ ...+||++++.+++.++.+.-.. ..
T Consensus 288 ~~~l~~evl~~la~~~~~-dir~L~g~l~~l~~~~a~~~~--------------~~~~i~~~~~~~~l~~~~~~~~~~~~ 352 (445)
T PRK12422 288 SIRIEETALDFLIEALSS-NVKSLLHALTLLAKRVAYKKL--------------SHQLLYVDDIKALLHDVLEAAESVRL 352 (445)
T ss_pred CCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHh--------------hCCCCCHHHHHHHHHHhhhcccCCCC
Confidence 543 33346667776664 667777766665432 22221 11579999999999976322111 12
Q ss_pred hhHHHHHHHHHHhCC-----CCCcccCCCC
Q 001746 993 ASMNELRKWNEQYGE-----GGSRRKSPFG 1017 (1018)
Q Consensus 993 ~~m~el~kW~diyG~-----~g~rkk~~~~ 1017 (1018)
..-.-...|.+.||- .+.+|++.++
T Consensus 353 t~~~I~~~Va~~~~v~~~dl~s~~R~~~i~ 382 (445)
T PRK12422 353 TPSKIIRAVAQYYGVSPESILGRSQSREYV 382 (445)
T ss_pred CHHHHHHHHHHHhCCCHHHHhcCCCCcccc
Confidence 223356689999995 4555655544
No 95
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1.1e-12 Score=159.41 Aligned_cols=407 Identities=17% Similarity=0.202 Sum_probs=229.7
Q ss_pred HHHHHHHHHhhCCCeEEEEcCchhhhhhccCcchHHHHHHHHHHHHhcCCCCEEEEeeccCCCCCccccccccccccccc
Q 001746 472 AMEALCEVLHSTQPLIVYFPDSSLWLSRAVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPNFG 551 (1018)
Q Consensus 472 ~i~~L~e~~~~~~p~Iiff~did~~~~~s~~~~~~~~~~s~~~~~l~~l~g~v~vi~~~~~~~~~~~~~~~~~~~~~~~~ 551 (1018)
-+..+.+++.+..+.|+|+|||-.++.-..++.-.-...+.|.-+|. .|-..+||+||-.+- .+
T Consensus 250 Rlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA--RGeL~~IGATT~~EY-Rk------------- 313 (786)
T COG0542 250 RLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALA--RGELRCIGATTLDEY-RK------------- 313 (786)
T ss_pred HHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHh--cCCeEEEEeccHHHH-HH-------------
Confidence 67888899998889999999999987765443211133555554443 478889988886441 10
Q ss_pred cccCCCCchhhhhcccccCCCcchHHHHhccccEEEEcCCChHHHHHHHHHHHHHHh---h-------------------
Q 001746 552 RLAKLPLPLQRLTEGLKATKRSDDNEIYNLFTNVLSIHPPKEEDLLRTFNKQVEEDR---R------------------- 609 (1018)
Q Consensus 552 ~~~~~~~~~~~LvIGmTnR~d~iD~aL~rrFe~~ieI~LPdeegRl~Il~iht~~~~---~------------------- 609 (1018)
. =.-|.||.|||- .+.+.-|+.+.-.+||+=--.+.- .
T Consensus 314 -----------~--------iEKD~AL~RRFQ-~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI 373 (786)
T COG0542 314 -----------Y--------IEKDAALERRFQ-KVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYI 373 (786)
T ss_pred -----------H--------hhhchHHHhcCc-eeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhc
Confidence 0 024688999984 678888999888888864211110 0
Q ss_pred --hhhhhhhHHHHHHHHhhhcC---CcccccccccchhhhhH--------h--hhhhhHhhcccccccccCCCCcc--CC
Q 001746 610 --IVIYRSNLNELHKVLEDHEL---SCTDLLHVNTDGVILTK--------Q--RAEKVVGWAKNHYLSSCSFPSVK--GQ 672 (1018)
Q Consensus 610 --~~~~~~~v~~l~~~l~t~~~---~gaDL~~Lct~a~lls~--------~--~~~~~V~~a~~~~l~~~~~~~v~--~~ 672 (1018)
..++++-++.+-++-..... ...+|..|..+...+.. + .....+.... .+.....+... -.
T Consensus 374 ~dR~LPDKAIDLiDeA~a~~~l~~~~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~k~~~~~~~--~~~~~~~~~~~~~~~ 451 (786)
T COG0542 374 PDRFLPDKAIDLLDEAGARVRLEIDKPEELDELERELAQLEIEKEALEREQDEKEKKLIDEII--KLKEGRIPELEKELE 451 (786)
T ss_pred ccCCCCchHHHHHHHHHHHHHhcccCCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH--HHhhhhhhhHHHHHh
Confidence 00122223333332222111 12233322211111000 0 0000000000 00000000000 00
Q ss_pred ceeeCHHHHHHHHHHhhhhhhccCCCcccccccchhHhhhhhc-ccccCCCCCCcccccccChHHHHHHHHHHHHcccCC
Q 001746 673 RLHLPRESLEIAILRLKEQETASRKPTQNLKNLAKDEYESNFV-SAVVPPGEIGVRFDDIGALEDVKKALNELVILPMRR 751 (1018)
Q Consensus 673 kv~V~~~df~~Al~~l~p~~~~~~~~~~~l~~~~~~e~e~~~~-~~ii~~~e~~vtfdDIgGle~vk~~L~e~V~~pL~~ 751 (1018)
. .|+.+++...+.++... ++..+.+.+-++.+- ... --..+.|++...+.+...|...
T Consensus 452 ~-~v~~~~Ia~vv~~~TgI---------Pv~~l~~~e~~kll~le~~--------L~~rViGQd~AV~avs~aIrra--- 510 (786)
T COG0542 452 A-EVDEDDIAEVVARWTGI---------PVAKLLEDEKEKLLNLERR--------LKKRVIGQDEAVEAVSDAIRRA--- 510 (786)
T ss_pred h-ccCHHHHHHHHHHHHCC---------ChhhhchhhHHHHHHHHHH--------HhcceeChHHHHHHHHHHHHHH---
Confidence 0 15556666555544321 111122221111100 000 0124678999988888887542
Q ss_pred chhhccCCC---CCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEeccccchh-----hhhhHHHHH-----HHH
Q 001746 752 PDLFSRGNL---LRPCKGILLFGPPGTGKTLLAKALATEAG---ANFISITGSTLTSK-----WFGDAEKLT-----KAL 815 (1018)
Q Consensus 752 ~elf~~~gl---~~p~~gVLL~GPPGTGKT~LArAIA~elg---~~fi~Is~seL~s~-----~~ge~ek~I-----~~l 815 (1018)
+.|+ .+|..++||.||.|+|||-||+++|..+. -.++.++|++++.+ ..|.+..+| ..+
T Consensus 511 -----RaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~L 585 (786)
T COG0542 511 -----RAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQL 585 (786)
T ss_pred -----hcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccch
Confidence 2332 34555689999999999999999999995 78999999998543 223222221 123
Q ss_pred HHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhcccccc-------CCCcEEEEEecCCCC--------
Q 001746 816 FSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSK-------ESQKILILGATNRPF-------- 880 (1018)
Q Consensus 816 F~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~-------~~~~VlVIaTTN~p~-------- 880 (1018)
-+..++.+.|||++|||+.- ...+++.|++.||...-. +-.+.+||+|||--.
T Consensus 586 TEaVRr~PySViLlDEIEKA------------HpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~ 653 (786)
T COG0542 586 TEAVRRKPYSVILLDEIEKA------------HPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDAD 653 (786)
T ss_pred hHhhhcCCCeEEEechhhhc------------CHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhcc
Confidence 33445666799999999873 356788899988853322 123678999997321
Q ss_pred --------------------CCcHHHHhccCccccccCCCHHHHHHHHHHHHhcc-------CCC---CcccHHHHHHHc
Q 001746 881 --------------------DLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHE-------SLE---SGFQFNELANAT 930 (1018)
Q Consensus 881 --------------------~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~-------~l~---~dvdl~~LA~~T 930 (1018)
.+.|+++.|++.+|.|...+.+...+|+...+... .+. ++.-...|+...
T Consensus 654 ~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~g 733 (786)
T COG0542 654 GDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKG 733 (786)
T ss_pred ccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhc
Confidence 04467888999999999999999999998887632 221 222245555554
Q ss_pred c--CCCHHHHHHHHHHHHHHHHHHHH
Q 001746 931 E--GYSGSDLKNLCIAAAYRPVQELL 954 (1018)
Q Consensus 931 e--GfSgaDL~~L~~~Aa~~Airr~~ 954 (1018)
- .|-++-|+.+++.-....+.+.+
T Consensus 734 yd~~~GARpL~R~Iq~~i~~~La~~i 759 (786)
T COG0542 734 YDPEYGARPLRRAIQQEIEDPLADEI 759 (786)
T ss_pred cCCCcCchHHHHHHHHHHHHHHHHHH
Confidence 2 46677888877776666665543
No 96
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=2e-13 Score=160.72 Aligned_cols=182 Identities=18% Similarity=0.189 Sum_probs=128.2
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA--------------- 790 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~--------------- 790 (1018)
.+|+|++|.+.+++.|...+.. -+.+.++||+||||||||++|+++|+.++.
T Consensus 11 ~~~~divGq~~i~~~L~~~i~~-------------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c 77 (472)
T PRK14962 11 KTFSEVVGQDHVKKLIINALKK-------------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRAC 77 (472)
T ss_pred CCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHH
Confidence 5799999999999998887643 123467999999999999999999999864
Q ss_pred ---------cEEEEeccccchhhhhhHHHHHHHHHHHHHh----cCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHh
Q 001746 791 ---------NFISITGSTLTSKWFGDAEKLTKALFSFASK----LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 857 (1018)
Q Consensus 791 ---------~fi~Is~seL~s~~~ge~ek~I~~lF~~A~k----~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~ 857 (1018)
.++.++++.- .....++.+...+.. ....||||||+|.|.. ...+.|+.
T Consensus 78 ~~i~~g~~~dv~el~aa~~------~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~------------~a~~~LLk 139 (472)
T PRK14962 78 RSIDEGTFMDVIELDAASN------RGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK------------EAFNALLK 139 (472)
T ss_pred HHHhcCCCCccEEEeCccc------CCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH------------HHHHHHHH
Confidence 3555554321 112334444444432 2346999999999842 12355666
Q ss_pred hhccccccCCCcEEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHccCCCHH
Q 001746 858 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGS 936 (1018)
Q Consensus 858 ~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeGfSga 936 (1018)
.++.. ...+++|++|+.+..+.+++++|+ ..+.+..|+.++...+++..+...++. ++..+..|+..+.| ..+
T Consensus 140 ~LE~p----~~~vv~Ilattn~~kl~~~L~SR~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~G-dlR 213 (472)
T PRK14962 140 TLEEP----PSHVVFVLATTNLEKVPPTIISRC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASG-GLR 213 (472)
T ss_pred HHHhC----CCcEEEEEEeCChHhhhHHHhcCc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-CHH
Confidence 65542 235666767777889999999999 578999999999999999988765543 34457788887765 555
Q ss_pred HHHHHHHH
Q 001746 937 DLKNLCIA 944 (1018)
Q Consensus 937 DL~~L~~~ 944 (1018)
++.+++..
T Consensus 214 ~aln~Le~ 221 (472)
T PRK14962 214 DALTMLEQ 221 (472)
T ss_pred HHHHHHHH
Confidence 55555544
No 97
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.53 E-value=4.3e-13 Score=157.02 Aligned_cols=214 Identities=18% Similarity=0.241 Sum_probs=136.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhcc
Q 001746 765 KGILLFGPPGTGKTLLAKALATEA-----GANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGAR 839 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~el-----g~~fi~Is~seL~s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r 839 (1018)
.+++||||+|+|||+|++|+|+++ +..++++++.+++..+.......-..-|....+..+.+|+|||++.+.+..
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~~ 210 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGKT 210 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCcH
Confidence 469999999999999999999986 467888998887665543321111122433344468999999999986442
Q ss_pred CCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCC---CcHHHHhccC--ccccccCCCHHHHHHHHHHHHhc
Q 001746 840 GGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFD---LDDAVIRRLP--RRIYVDLPDAENRMKILRIFLAH 914 (1018)
Q Consensus 840 ~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~---LD~aLlrRFd--~~I~V~lPd~eeR~eILk~~L~~ 914 (1018)
. ...+|+..++.+.. ..+.+||++...|.. +.+.+++||. ..+.+..|+.+.|.+|++..+..
T Consensus 211 ~----------~q~elf~~~n~l~~--~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~ 278 (440)
T PRK14088 211 G----------VQTELFHTFNELHD--SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEI 278 (440)
T ss_pred H----------HHHHHHHHHHHHHH--cCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHh
Confidence 1 11233333333322 224566666667765 5567888885 35668899999999999999875
Q ss_pred cCCC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHHhhCCCcc-hhh
Q 001746 915 ESLE-SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQSKAKVGPSVA-YDA 992 (1018)
Q Consensus 915 ~~l~-~dvdl~~LA~~TeGfSgaDL~~L~~~Aa~~Airr~~~~~~~~~~~~~~~~~rpLT~eDF~~Al~kv~PSvs-~~~ 992 (1018)
.++. ++..++.||....| +.++|..++......+... .++||++...++++.+..... ...
T Consensus 279 ~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~~~~----------------~~~it~~~a~~~L~~~~~~~~~~~~ 341 (440)
T PRK14088 279 EHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKETT----------------GEEVDLKEAILLLKDFIKPNRVKAM 341 (440)
T ss_pred cCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHHHHHHHh----------------CCCCCHHHHHHHHHHHhccccccCC
Confidence 5443 34447888887765 7777777776543222111 156888888888887632111 111
Q ss_pred hhHH-HHHHHHHHhCC
Q 001746 993 ASMN-ELRKWNEQYGE 1007 (1018)
Q Consensus 993 ~~m~-el~kW~diyG~ 1007 (1018)
..++ -...-.+.||-
T Consensus 342 i~~~~I~~~V~~~~~i 357 (440)
T PRK14088 342 DPIDELIEIVAKVTGV 357 (440)
T ss_pred CCHHHHHHHHHHHcCC
Confidence 2233 24566777774
No 98
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.52 E-value=5.6e-13 Score=159.43 Aligned_cols=213 Identities=19% Similarity=0.269 Sum_probs=138.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhcc
Q 001746 765 KGILLFGPPGTGKTLLAKALATEA-----GANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGAR 839 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~el-----g~~fi~Is~seL~s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r 839 (1018)
+.++|||++|+|||+|++||++++ +..++++++.+++..+...........|....+ .+.+|+||||+.+.++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~-~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYR-EMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhh-cCCEEEEehhccccCCH
Confidence 459999999999999999999987 578899999888776655443332334543333 56899999999986542
Q ss_pred CCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCC---CCcHHHHhccCcc--ccccCCCHHHHHHHHHHHHhc
Q 001746 840 GGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPF---DLDDAVIRRLPRR--IYVDLPDAENRMKILRIFLAH 914 (1018)
Q Consensus 840 ~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~---~LD~aLlrRFd~~--I~V~lPd~eeR~eILk~~L~~ 914 (1018)
. ...+|+..++.+.. ..+.+||++...|. .+++.|++||... +.+..|+.+.|.+||+..+..
T Consensus 394 ~----------tqeeLF~l~N~l~e--~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~ 461 (617)
T PRK14086 394 S----------TQEEFFHTFNTLHN--ANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQ 461 (617)
T ss_pred H----------HHHHHHHHHHHHHh--cCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHh
Confidence 1 11233344443322 12344444433343 4778999999654 477889999999999999987
Q ss_pred cCCC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHHhhCCCcch-hh
Q 001746 915 ESLE-SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAY-DA 992 (1018)
Q Consensus 915 ~~l~-~dvdl~~LA~~TeGfSgaDL~~L~~~Aa~~Airr~~~~~~~~~~~~~~~~~rpLT~eDF~~Al~kv~PSvs~-~~ 992 (1018)
.++. ++.-++.|+....+ +.++|..++......+... .++||++....+++.+.+.... ..
T Consensus 462 r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~a~a~~~----------------~~~itl~la~~vL~~~~~~~~~~~i 524 (617)
T PRK14086 462 EQLNAPPEVLEFIASRISR-NIRELEGALIRVTAFASLN----------------RQPVDLGLTEIVLRDLIPEDSAPEI 524 (617)
T ss_pred cCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhh----------------CCCCCHHHHHHHHHHhhccccCCcC
Confidence 6665 34447778877764 6777777666543222211 1468888888888877553221 12
Q ss_pred hhHHHHHHHHHHhCC
Q 001746 993 ASMNELRKWNEQYGE 1007 (1018)
Q Consensus 993 ~~m~el~kW~diyG~ 1007 (1018)
..-.-+..-.+.||.
T Consensus 525 t~d~I~~~Va~~f~v 539 (617)
T PRK14086 525 TAAAIMAATADYFGL 539 (617)
T ss_pred CHHHHHHHHHHHhCC
Confidence 222234466777773
No 99
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.52 E-value=3.5e-13 Score=168.64 Aligned_cols=184 Identities=23% Similarity=0.342 Sum_probs=135.1
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA----------GANFISI 795 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~el----------g~~fi~I 795 (1018)
-.+++++|.+.....+.+.+.. +...++||+||||||||++|+.+|+.+ +.+++.+
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r--------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLR--------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhc--------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 3678899999876666554311 122569999999999999999999986 2557888
Q ss_pred eccccch--hhhhhHHHHHHHHHHHHHh-cCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEE
Q 001746 796 TGSTLTS--KWFGDAEKLTKALFSFASK-LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILI 872 (1018)
Q Consensus 796 s~seL~s--~~~ge~ek~I~~lF~~A~k-~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlV 872 (1018)
++..+.. .+.|+.+..++.+|..++. ..+.|||||||+.|.+.+........ .+.|.-.+ ....+.+
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~----~n~Lkp~l------~~G~l~~ 319 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDA----ANLLKPAL------ARGELRT 319 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccH----HHHhhHHh------hCCCeEE
Confidence 8877753 5788999999999999875 36899999999999876532211111 12222222 2346889
Q ss_pred EEecCCC-----CCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccC----CC-CcccHHHHHHHccCCC
Q 001746 873 LGATNRP-----FDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHES----LE-SGFQFNELANATEGYS 934 (1018)
Q Consensus 873 IaTTN~p-----~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~----l~-~dvdl~~LA~~TeGfS 934 (1018)
||||+.. ..+|++|.||| ..|.|+.|+.+++.+||+.+..... +. .+..+..++.++.+|-
T Consensus 320 IgaTT~~e~~~~~~~d~AL~rRf-~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 320 IAATTWAEYKKYFEKDPALTRRF-QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred EEecCHHHHhhhhhccHHHHHhC-eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 9998753 44999999999 5899999999999999877665322 21 4556888888888764
No 100
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.52 E-value=2.3e-13 Score=147.31 Aligned_cols=196 Identities=24% Similarity=0.297 Sum_probs=137.4
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhh
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWF 805 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~s~~~ 805 (1018)
.+|+|.+|++++|+.|.-++.-...+. ...-++|||||||.|||+||..||+++|.++...+++-+-. .
T Consensus 23 ~~l~efiGQ~~vk~~L~ifI~AAk~r~---------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK--~ 91 (332)
T COG2255 23 KTLDEFIGQEKVKEQLQIFIKAAKKRG---------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK--P 91 (332)
T ss_pred ccHHHhcChHHHHHHHHHHHHHHHhcC---------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC--h
Confidence 479999999999999998886543332 34467999999999999999999999999998887766532 1
Q ss_pred hhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHH-hhhccccc------cCCCcEEEEEecCC
Q 001746 806 GDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFM-SAWDGLRS------KESQKILILGATNR 878 (1018)
Q Consensus 806 ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL-~~Ldgl~~------~~~~~VlVIaTTN~ 878 (1018)
|. +..++... ...+|+|||||+++.+.. .+..-..+..|. ..+-|--+ -+-.++-+||+|.+
T Consensus 92 gD----laaiLt~L--e~~DVLFIDEIHrl~~~v-----EE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr 160 (332)
T COG2255 92 GD----LAAILTNL--EEGDVLFIDEIHRLSPAV-----EEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTR 160 (332)
T ss_pred hh----HHHHHhcC--CcCCeEEEehhhhcChhH-----HHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccc
Confidence 22 22333322 245899999999985432 122111222221 11101100 12246789999999
Q ss_pred CCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHccCCCHHHHHHHHHH
Q 001746 879 PFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLKNLCIA 944 (1018)
Q Consensus 879 p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeGfSgaDL~~L~~~ 944 (1018)
...|...|+.||.....+...+.++..+|+.......++. .+....+||+.+.| |++=-..|+++
T Consensus 161 ~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrR 226 (332)
T COG2255 161 AGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRR 226 (332)
T ss_pred cccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHH
Confidence 9999999999999999999999999999999887765554 33447789999998 55544444433
No 101
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.52 E-value=7.3e-13 Score=153.92 Aligned_cols=180 Identities=24% Similarity=0.364 Sum_probs=125.5
Q ss_pred cccccccChHHHHHH---HHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch
Q 001746 726 VRFDDIGALEDVKKA---LNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS 802 (1018)
Q Consensus 726 vtfdDIgGle~vk~~---L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~s 802 (1018)
.+|+|++|.+.+... |...+.. ....++||+||||||||++|+++|+.++.+|+.+++....
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~--------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~- 73 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEA--------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSG- 73 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHc--------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccc-
Confidence 468999999988666 7776632 1124799999999999999999999999999999876421
Q ss_pred hhhhhHHHHHHHHHHHHH----hcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEec--
Q 001746 803 KWFGDAEKLTKALFSFAS----KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGAT-- 876 (1018)
Q Consensus 803 ~~~ge~ek~I~~lF~~A~----k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTT-- 876 (1018)
...++.++..+. .....||||||+|.+... ..+.|+..++. ..+++|++|
T Consensus 74 ------~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~------------~q~~LL~~le~------~~iilI~att~ 129 (413)
T PRK13342 74 ------VKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA------------QQDALLPHVED------GTITLIGATTE 129 (413)
T ss_pred ------HHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH------------HHHHHHHHhhc------CcEEEEEeCCC
Confidence 223444444442 235689999999998422 12344444432 346666654
Q ss_pred CCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhcc--CC--CCcccHHHHHHHccCCCHHHHHHHHHHHH
Q 001746 877 NRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHE--SL--ESGFQFNELANATEGYSGSDLKNLCIAAA 946 (1018)
Q Consensus 877 N~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~--~l--~~dvdl~~LA~~TeGfSgaDL~~L~~~Aa 946 (1018)
|....+++++++|| ..+.++.|+.++...+++..+... ++ .++..+..|+..+.| ..+.+.++++.++
T Consensus 130 n~~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~~ 201 (413)
T PRK13342 130 NPSFEVNPALLSRA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELAA 201 (413)
T ss_pred ChhhhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 34457999999999 778999999999999999887642 11 123346677777754 5666666666554
No 102
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=6.8e-13 Score=151.78 Aligned_cols=184 Identities=22% Similarity=0.260 Sum_probs=131.0
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 791 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~-------------- 791 (1018)
.+|+||+|.+.+++.+...+.. .+.++.+||+||||+|||++|+++|+.+.+.
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~-------------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c 79 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSL-------------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIIC 79 (363)
T ss_pred CchhhccChHHHHHHHHHHHHc-------------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 5799999999999999887743 1234668999999999999999999998532
Q ss_pred ----------EEEEeccccchhhhhhHHHHHHHHHHHHHhc----CCeEEEecchhhhhhccCCCcchHHHHHHHHHHHh
Q 001746 792 ----------FISITGSTLTSKWFGDAEKLTKALFSFASKL----APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 857 (1018)
Q Consensus 792 ----------fi~Is~seL~s~~~ge~ek~I~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~ 857 (1018)
++.+++.. ......++.+...+... ...|++|||+|.+.. ...+.|+.
T Consensus 80 ~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~------------~a~naLLk 141 (363)
T PRK14961 80 KEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR------------HSFNALLK 141 (363)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH------------HHHHHHHH
Confidence 22232221 01123345555444322 235999999998832 22345666
Q ss_pred hhccccccCCCcEEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHccCCCHH
Q 001746 858 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGS 936 (1018)
Q Consensus 858 ~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeGfSga 936 (1018)
.++.. ...+.+|.+|+.++.+.+++++|+ ..+.++.|+.++..++++..++..++. ++..+..++..+.| +.+
T Consensus 142 ~lEe~----~~~~~fIl~t~~~~~l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~R 215 (363)
T PRK14961 142 TLEEP----PQHIKFILATTDVEKIPKTILSRC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SMR 215 (363)
T ss_pred HHhcC----CCCeEEEEEcCChHhhhHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 66542 235666667777888999999998 678999999999999999988876643 44557778888876 777
Q ss_pred HHHHHHHHHH
Q 001746 937 DLKNLCIAAA 946 (1018)
Q Consensus 937 DL~~L~~~Aa 946 (1018)
++.+++..++
T Consensus 216 ~al~~l~~~~ 225 (363)
T PRK14961 216 DALNLLEHAI 225 (363)
T ss_pred HHHHHHHHHH
Confidence 7777776654
No 103
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.50 E-value=3.5e-13 Score=154.56 Aligned_cols=178 Identities=26% Similarity=0.366 Sum_probs=134.8
Q ss_pred ccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch-hhhh-hH
Q 001746 731 IGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS-KWFG-DA 808 (1018)
Q Consensus 731 IgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~s-~~~g-e~ 808 (1018)
|+|+++.+..+...+...+++..+.....--.++++|||+||||||||++|+++|..++.+|+.+++..+.. .|.| +.
T Consensus 14 IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dv 93 (441)
T TIGR00390 14 IIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 93 (441)
T ss_pred ccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCH
Confidence 689999999998888765554433222111234589999999999999999999999999999999988864 6777 56
Q ss_pred HHHHHHHHHHHH--------------------------------------------------------------------
Q 001746 809 EKLTKALFSFAS-------------------------------------------------------------------- 820 (1018)
Q Consensus 809 ek~I~~lF~~A~-------------------------------------------------------------------- 820 (1018)
+..++.+|..|.
T Consensus 94 E~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~ 173 (441)
T TIGR00390 94 ESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEID 173 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEEe
Confidence 777777777660
Q ss_pred -----------------------------------------------------------------------hcCCeEEEe
Q 001746 821 -----------------------------------------------------------------------KLAPVIIFV 829 (1018)
Q Consensus 821 -----------------------------------------------------------------------k~~PsIIfI 829 (1018)
.-+-.||||
T Consensus 174 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVfi 253 (441)
T TIGR00390 174 VSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIFI 253 (441)
T ss_pred ecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 013469999
Q ss_pred cchhhhhhccCCCcchHHHHHHHHHHHhhhcccc------ccCCCcEEEEEec----CCCCCCcHHHHhccCccccccCC
Q 001746 830 DEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR------SKESQKILILGAT----NRPFDLDDAVIRRLPRRIYVDLP 899 (1018)
Q Consensus 830 DEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~------~~~~~~VlVIaTT----N~p~~LD~aLlrRFd~~I~V~lP 899 (1018)
||||.++....+.........+.+.||..+.|-. .-+...+++|++. ..|.+|-|.+.-||+..+.+..+
T Consensus 254 DEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~L 333 (441)
T TIGR00390 254 DEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPIRVELQAL 333 (441)
T ss_pred EchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCCC
Confidence 9999998665322212223457788888888732 2245678999875 46888999999999999999999
Q ss_pred CHHHHHHHH
Q 001746 900 DAENRMKIL 908 (1018)
Q Consensus 900 d~eeR~eIL 908 (1018)
+.++...||
T Consensus 334 ~~edL~rIL 342 (441)
T TIGR00390 334 TTDDFERIL 342 (441)
T ss_pred CHHHHHHHh
Confidence 999998887
No 104
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=7.5e-13 Score=158.54 Aligned_cols=184 Identities=23% Similarity=0.246 Sum_probs=135.1
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA--------------- 790 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~--------------- 790 (1018)
.+|+||+|.+.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+++
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~-------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC 78 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALER-------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATC 78 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHH
Confidence 5799999999999999988743 133567999999999999999999999865
Q ss_pred ---------cEEEEeccccchhhhhhHHHHHHHHHHHHH----hcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHh
Q 001746 791 ---------NFISITGSTLTSKWFGDAEKLTKALFSFAS----KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 857 (1018)
Q Consensus 791 ---------~fi~Is~seL~s~~~ge~ek~I~~lF~~A~----k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~ 857 (1018)
.++.+++++-. ....++.+...+. .....|+||||+|.|.. ...+.|+.
T Consensus 79 ~~I~~g~hpDviEIDAAs~~------~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~------------~A~NALLK 140 (702)
T PRK14960 79 KAVNEGRFIDLIEIDAASRT------KVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST------------HSFNALLK 140 (702)
T ss_pred HHHhcCCCCceEEecccccC------CHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH------------HHHHHHHH
Confidence 34455543211 1223444444332 22356999999999842 23456666
Q ss_pred hhccccccCCCcEEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHccCCCHH
Q 001746 858 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGS 936 (1018)
Q Consensus 858 ~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeGfSga 936 (1018)
.++.. ...+.+|.+|+.+..+...+++|+ ..+.|..++.++..++++.++..+++. ++..+..|+..+.| +.+
T Consensus 141 tLEEP----P~~v~FILaTtd~~kIp~TIlSRC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-dLR 214 (702)
T PRK14960 141 TLEEP----PEHVKFLFATTDPQKLPITVISRC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-SLR 214 (702)
T ss_pred HHhcC----CCCcEEEEEECChHhhhHHHHHhh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 66543 235667777788888999999999 678999999999999999999877654 44457888888876 788
Q ss_pred HHHHHHHHHH
Q 001746 937 DLKNLCIAAA 946 (1018)
Q Consensus 937 DL~~L~~~Aa 946 (1018)
++.+++..+.
T Consensus 215 dALnLLDQaI 224 (702)
T PRK14960 215 DALSLTDQAI 224 (702)
T ss_pred HHHHHHHHHH
Confidence 8888876654
No 105
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.50 E-value=2.1e-13 Score=170.85 Aligned_cols=164 Identities=25% Similarity=0.390 Sum_probs=124.6
Q ss_pred ccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 001746 727 RFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA----------GANFISIT 796 (1018)
Q Consensus 727 tfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~el----------g~~fi~Is 796 (1018)
.+++++|.+.....+.+.+.. +...++||+||||||||++|+++|..+ +.+++.++
T Consensus 176 ~l~~vigr~~ei~~~i~iL~r--------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~ 241 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVLQR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 241 (857)
T ss_pred CCCcCCCCHHHHHHHHHHHhc--------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEe
Confidence 577899999876666554421 122469999999999999999999988 67899998
Q ss_pred ccccc--hhhhhhHHHHHHHHHHHHHh-cCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEE
Q 001746 797 GSTLT--SKWFGDAEKLTKALFSFASK-LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILIL 873 (1018)
Q Consensus 797 ~seL~--s~~~ge~ek~I~~lF~~A~k-~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVI 873 (1018)
+..+. .++.|+.+..++.+|..+.+ ..++||||||++.|.+.......... .+.|...+ ....+.+|
T Consensus 242 l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~----~~~lkp~l------~~g~l~~I 311 (857)
T PRK10865 242 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDA----GNMLKPAL------ARGELHCV 311 (857)
T ss_pred hhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhH----HHHhcchh------hcCCCeEE
Confidence 88876 45778999999999998654 56899999999999876533222222 12222222 34578999
Q ss_pred EecCCCC-----CCcHHHHhccCccccccCCCHHHHHHHHHHHHhcc
Q 001746 874 GATNRPF-----DLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHE 915 (1018)
Q Consensus 874 aTTN~p~-----~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~ 915 (1018)
|||+..+ .+|+++.|||. .|.++.|+.+++..||+.+....
T Consensus 312 gaTt~~e~r~~~~~d~al~rRf~-~i~v~eP~~~~~~~iL~~l~~~~ 357 (857)
T PRK10865 312 GATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAILRGLKERY 357 (857)
T ss_pred EcCCCHHHHHHhhhcHHHHhhCC-EEEeCCCCHHHHHHHHHHHhhhh
Confidence 9998765 48999999996 68899999999999999876543
No 106
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.49 E-value=2.9e-12 Score=145.47 Aligned_cols=221 Identities=19% Similarity=0.226 Sum_probs=141.4
Q ss_pred ccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---------CcEEEEeccc
Q 001746 729 DDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAG---------ANFISITGST 799 (1018)
Q Consensus 729 dDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg---------~~fi~Is~se 799 (1018)
+++.|.++.++.|...+...+. + ..+.+++|+||||||||++++++++++. +.+++++|..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~-------~---~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR-------G---SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc-------C---CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 4688999999999888754221 1 1235699999999999999999998762 5788888865
Q ss_pred cchh----------hh--h--------hHHHHHHHHHHHHH-hcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhh
Q 001746 800 LTSK----------WF--G--------DAEKLTKALFSFAS-KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSA 858 (1018)
Q Consensus 800 L~s~----------~~--g--------e~ek~I~~lF~~A~-k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ 858 (1018)
.... .. + ........++.... ...+.||+|||+|.+.... ..++.+++..
T Consensus 85 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~---------~~~L~~l~~~ 155 (365)
T TIGR02928 85 LDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD---------DDLLYQLSRA 155 (365)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC---------cHHHHhHhcc
Confidence 4321 10 0 11223444555443 2456899999999997221 1233444433
Q ss_pred hccccccCCCcEEEEEecCCCC---CCcHHHHhccC-ccccccCCCHHHHHHHHHHHHhc---cCCCCcccHHHHHHH--
Q 001746 859 WDGLRSKESQKILILGATNRPF---DLDDAVIRRLP-RRIYVDLPDAENRMKILRIFLAH---ESLESGFQFNELANA-- 929 (1018)
Q Consensus 859 Ldgl~~~~~~~VlVIaTTN~p~---~LD~aLlrRFd-~~I~V~lPd~eeR~eILk~~L~~---~~l~~dvdl~~LA~~-- 929 (1018)
.+. ....+.++.+|+++|.++ .+++.+.+||. ..+.|++++.++..+|++..+.. .....+..++.++..
T Consensus 156 ~~~-~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~ 234 (365)
T TIGR02928 156 RSN-GDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAA 234 (365)
T ss_pred ccc-cCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHH
Confidence 111 112335788999998886 47888888885 57899999999999999998862 111122223444443
Q ss_pred -ccCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHHhhC
Q 001746 930 -TEGYSGSDLKNLCIAAAYRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQSKAKVG 985 (1018)
Q Consensus 930 -TeGfSgaDL~~L~~~Aa~~Airr~~~~~~~~~~~~~~~~~rpLT~eDF~~Al~kv~ 985 (1018)
+.| ..+.+.++|..|+..|..+. ...|+.+|+..|+..+.
T Consensus 235 ~~~G-d~R~al~~l~~a~~~a~~~~---------------~~~it~~~v~~a~~~~~ 275 (365)
T TIGR02928 235 QEHG-DARKAIDLLRVAGEIAEREG---------------AERVTEDHVEKAQEKIE 275 (365)
T ss_pred HhcC-CHHHHHHHHHHHHHHHHHcC---------------CCCCCHHHHHHHHHHHH
Confidence 345 34555667777776664321 13578888887776664
No 107
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.49 E-value=1.5e-12 Score=152.91 Aligned_cols=224 Identities=16% Similarity=0.191 Sum_probs=144.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccchhhhhhHHH---HHHHHHHHHHhcCCeEEEecchhhhh
Q 001746 765 KGILLFGPPGTGKTLLAKALATEA-----GANFISITGSTLTSKWFGDAEK---LTKALFSFASKLAPVIIFVDEVDSLL 836 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~el-----g~~fi~Is~seL~s~~~ge~ek---~I~~lF~~A~k~~PsIIfIDEID~L~ 836 (1018)
.+++|||++|+|||+|++|+++++ +..++++++.++...+...... .+.. |.... ..+.+|+|||++.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~-~~~~~-~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQ-FKNEI-CQNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHH-HHHHh-ccCCEEEEecccccc
Confidence 569999999999999999999965 4788899998887665544322 1221 22112 356799999999885
Q ss_pred hccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCC---CcHHHHhccCc--cccccCCCHHHHHHHHHHH
Q 001746 837 GARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFD---LDDAVIRRLPR--RIYVDLPDAENRMKILRIF 911 (1018)
Q Consensus 837 ~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~---LD~aLlrRFd~--~I~V~lPd~eeR~eILk~~ 911 (1018)
++. ....+|...++.+.. ..+.+||++...|.. +++.+++||.. .+.+..|+.++|.+|++..
T Consensus 220 ~k~----------~~~e~lf~l~N~~~~--~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 220 YKE----------KTNEIFFTIFNNFIE--NDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred CCH----------HHHHHHHHHHHHHHH--cCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence 431 112334444433322 223445544444544 67899999964 4557789999999999999
Q ss_pred HhccCC---CCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHHhhCCCc
Q 001746 912 LAHESL---ESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQSKAKVGPSV 988 (1018)
Q Consensus 912 L~~~~l---~~dvdl~~LA~~TeGfSgaDL~~L~~~Aa~~Airr~~~~~~~~~~~~~~~~~rpLT~eDF~~Al~kv~PSv 988 (1018)
+...++ -++..+..|+..+.| +.+.|..+|..+...+.... ..++||++.+.++++++...-
T Consensus 288 ~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~--------------~~~~it~~~v~~~l~~~~~~~ 352 (450)
T PRK14087 288 IKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQNP--------------EEKIITIEIVSDLFRDIPTSK 352 (450)
T ss_pred HHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhccc--------------CCCCCCHHHHHHHHhhccccc
Confidence 986543 234457778888876 78888888877654433210 014689999999998874322
Q ss_pred chhhhhHHHHHHHHHHhCC-----CCCcccCCCC
Q 001746 989 AYDAASMNELRKWNEQYGE-----GGSRRKSPFG 1017 (1018)
Q Consensus 989 s~~~~~m~el~kW~diyG~-----~g~rkk~~~~ 1017 (1018)
......-.-...-.+.||- .|.+|++.++
T Consensus 353 ~~~~t~~~I~~~Va~~~~i~~~dl~s~~R~~~i~ 386 (450)
T PRK14087 353 LGILNVKKIKEVVSEKYGISVNAIDGKARSKSIV 386 (450)
T ss_pred cCCCCHHHHHHHHHHHcCCCHHHHhCCCCCcccc
Confidence 1112222345577888884 4555665544
No 108
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.49 E-value=3.7e-13 Score=156.01 Aligned_cols=234 Identities=24% Similarity=0.326 Sum_probs=153.2
Q ss_pred CCCCCCccccc-ccChHHHHHHHHHHHHcccCCchhhcc--CCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001746 720 PPGEIGVRFDD-IGALEDVKKALNELVILPMRRPDLFSR--GNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISIT 796 (1018)
Q Consensus 720 ~~~e~~vtfdD-IgGle~vk~~L~e~V~~pL~~~elf~~--~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is 796 (1018)
.|.++...+++ |+|++.+++.|...+..+.++...... .....+..++||+||||||||++|+++|..++.+|+.++
T Consensus 61 ~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id 140 (412)
T PRK05342 61 TPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIAD 140 (412)
T ss_pred CHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecc
Confidence 34444445554 799999999998877654433211100 011234578999999999999999999999999999999
Q ss_pred ccccch-hhhhhH-HHHHHHHHHH----HHhcCCeEEEecchhhhhhccCCCc-ch-HHHHHHHHHHHhhhcccc-----
Q 001746 797 GSTLTS-KWFGDA-EKLTKALFSF----ASKLAPVIIFVDEVDSLLGARGGAF-EH-EATRRMRNEFMSAWDGLR----- 863 (1018)
Q Consensus 797 ~seL~s-~~~ge~-ek~I~~lF~~----A~k~~PsIIfIDEID~L~~~r~~~~-~~-e~~~~il~~LL~~Ldgl~----- 863 (1018)
++.+.. .|+|.. +..+..++.. ..+..++||||||||.+.....+.. .. .....+.+.||..|++..
T Consensus 141 ~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~ 220 (412)
T PRK05342 141 ATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPP 220 (412)
T ss_pred hhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCC
Confidence 988753 566754 4445555443 2345789999999999976533211 11 112346778888887532
Q ss_pred ----ccCCCcEEEEEecCCCC----------------------------------------------------CCcHHHH
Q 001746 864 ----SKESQKILILGATNRPF----------------------------------------------------DLDDAVI 887 (1018)
Q Consensus 864 ----~~~~~~VlVIaTTN~p~----------------------------------------------------~LD~aLl 887 (1018)
..+....++|.|+|-.+ -+.|+++
T Consensus 221 ~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl 300 (412)
T PRK05342 221 QGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI 300 (412)
T ss_pred CCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh
Confidence 11122345566655411 0356777
Q ss_pred hccCccccccCCCHHHHHHHHHH----HHh-------ccCCC---CcccHHHHHHH--ccCCCHHHHHHHHHHHHHHHHH
Q 001746 888 RRLPRRIYVDLPDAENRMKILRI----FLA-------HESLE---SGFQFNELANA--TEGYSGSDLKNLCIAAAYRPVQ 951 (1018)
Q Consensus 888 rRFd~~I~V~lPd~eeR~eILk~----~L~-------~~~l~---~dvdl~~LA~~--TeGfSgaDL~~L~~~Aa~~Air 951 (1018)
.|++..+.|...+.++..+|+.. +++ ..++. ++..++.|++. ..++-.+.|+.+++......+.
T Consensus 301 gRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~ 380 (412)
T PRK05342 301 GRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMF 380 (412)
T ss_pred CCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHH
Confidence 79999999999999999999872 332 22222 33346677775 3456678888888888777776
Q ss_pred HH
Q 001746 952 EL 953 (1018)
Q Consensus 952 r~ 953 (1018)
++
T Consensus 381 ~~ 382 (412)
T PRK05342 381 EL 382 (412)
T ss_pred hc
Confidence 65
No 109
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=6.3e-13 Score=157.97 Aligned_cols=184 Identities=19% Similarity=0.190 Sum_probs=134.2
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 791 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~-------------- 791 (1018)
.+|+||+|.+.+++.|...+.. .+.+..+||+||||||||++|+++|+.+++.
T Consensus 13 ~~f~divGq~~v~~~L~~~~~~-------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 79 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNALDQ-------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENC 79 (509)
T ss_pred CCHHHhcCCHHHHHHHHHHHHh-------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHH
Confidence 5799999999999999998743 1234568999999999999999999998642
Q ss_pred ----------EEEEeccccchhhhhhHHHHHHHHHHHHHh----cCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHh
Q 001746 792 ----------FISITGSTLTSKWFGDAEKLTKALFSFASK----LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 857 (1018)
Q Consensus 792 ----------fi~Is~seL~s~~~ge~ek~I~~lF~~A~k----~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~ 857 (1018)
++.++++.- .....++.+...+.. ....|++|||+|.|.. ...+.|+.
T Consensus 80 ~~i~~g~~~d~~eidaas~------~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~------------~a~naLLk 141 (509)
T PRK14958 80 REIDEGRFPDLFEVDAASR------TKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG------------HSFNALLK 141 (509)
T ss_pred HHHhcCCCceEEEEccccc------CCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH------------HHHHHHHH
Confidence 455554321 112224444433321 2346999999999842 22456777
Q ss_pred hhccccccCCCcEEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHccCCCHH
Q 001746 858 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGS 936 (1018)
Q Consensus 858 ~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeGfSga 936 (1018)
.|+.. ...+.+|.+|+.+..+.+.+++|+ ..+.|..++.++....++..+..+++. ++..+..|+..+.| +.+
T Consensus 142 ~LEep----p~~~~fIlattd~~kl~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-slR 215 (509)
T PRK14958 142 TLEEP----PSHVKFILATTDHHKLPVTVLSRC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG-SVR 215 (509)
T ss_pred HHhcc----CCCeEEEEEECChHhchHHHHHHh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHH
Confidence 66553 234667777788888998999998 678899999999999999998877654 34457788888876 788
Q ss_pred HHHHHHHHHH
Q 001746 937 DLKNLCIAAA 946 (1018)
Q Consensus 937 DL~~L~~~Aa 946 (1018)
++.+++..++
T Consensus 216 ~al~lLdq~i 225 (509)
T PRK14958 216 DALSLLDQSI 225 (509)
T ss_pred HHHHHHHHHH
Confidence 8888887664
No 110
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.49 E-value=4.8e-13 Score=159.93 Aligned_cols=213 Identities=21% Similarity=0.266 Sum_probs=140.7
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA----------GANFISI 795 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~el----------g~~fi~I 795 (1018)
.+|+++.|.+..++.++..+.. ..+.+|||+||||||||++|+++++++ +.+|+.+
T Consensus 62 ~~f~~iiGqs~~i~~l~~al~~--------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~i 127 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAALCG--------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEI 127 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHHhC--------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEE
Confidence 5799999999999888765421 123579999999999999999998753 3689999
Q ss_pred ecccc-------chhhhhhHHHHH---HHHHH----------HHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHH
Q 001746 796 TGSTL-------TSKWFGDAEKLT---KALFS----------FASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEF 855 (1018)
Q Consensus 796 s~seL-------~s~~~ge~ek~I---~~lF~----------~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~L 855 (1018)
+|... .....+.....+ ...|. ...+....+||||||+.|... . .+.|
T Consensus 128 d~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~--------~----q~~L 195 (531)
T TIGR02902 128 DATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPV--------Q----MNKL 195 (531)
T ss_pred ccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHH--------H----HHHH
Confidence 98642 111111100000 00010 011223579999999998432 2 2233
Q ss_pred Hhhhccc--------c-----------------ccCCCcEEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHH
Q 001746 856 MSAWDGL--------R-----------------SKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRI 910 (1018)
Q Consensus 856 L~~Ldgl--------~-----------------~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~ 910 (1018)
+..|+.. . ..+.+-.+|++||+.|+.+++++++|| ..+.++.++.+++.+|++.
T Consensus 196 L~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~-~~I~f~pL~~eei~~Il~~ 274 (531)
T TIGR02902 196 LKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRC-VEIFFRPLLDEEIKEIAKN 274 (531)
T ss_pred HHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhh-heeeCCCCCHHHHHHHHHH
Confidence 3222110 0 001122455667788999999999998 5778888899999999999
Q ss_pred HHhccCCC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHH
Q 001746 911 FLAHESLE-SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQSKA 982 (1018)
Q Consensus 911 ~L~~~~l~-~dvdl~~LA~~TeGfSgaDL~~L~~~Aa~~Airr~~~~~~~~~~~~~~~~~rpLT~eDF~~Al~ 982 (1018)
.+++.++. ++..++.|+..+. +++++.++++.|+..|..+ . ...|+.+|+..++.
T Consensus 275 ~a~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~~----~-----------~~~It~~dI~~vl~ 330 (531)
T TIGR02902 275 AAEKIGINLEKHALELIVKYAS--NGREAVNIVQLAAGIALGE----G-----------RKRILAEDIEWVAE 330 (531)
T ss_pred HHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhC----C-----------CcEEcHHHHHHHhC
Confidence 99876643 3334666666553 7899999999988766432 0 13589999999986
No 111
>PRK04195 replication factor C large subunit; Provisional
Probab=99.49 E-value=5.2e-13 Score=158.05 Aligned_cols=185 Identities=25% Similarity=0.363 Sum_probs=130.7
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhh
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWF 805 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~s~~~ 805 (1018)
.+|+||.|.+++++.|..++.... .+ .+++++||+||||||||++|+++|++++.+++.+++++....
T Consensus 11 ~~l~dlvg~~~~~~~l~~~l~~~~-------~g---~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~-- 78 (482)
T PRK04195 11 KTLSDVVGNEKAKEQLREWIESWL-------KG---KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTA-- 78 (482)
T ss_pred CCHHHhcCCHHHHHHHHHHHHHHh-------cC---CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccH--
Confidence 579999999999999999885422 11 246789999999999999999999999999999998765321
Q ss_pred hhHHHHHHHHHHHHHh------cCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCC
Q 001746 806 GDAEKLTKALFSFASK------LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP 879 (1018)
Q Consensus 806 ge~ek~I~~lF~~A~k------~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p 879 (1018)
..+..+...+.. ..+.||+|||+|.+..... ....+.|+..++. .+..+|+++|.+
T Consensus 79 ----~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d--------~~~~~aL~~~l~~------~~~~iIli~n~~ 140 (482)
T PRK04195 79 ----DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED--------RGGARAILELIKK------AKQPIILTANDP 140 (482)
T ss_pred ----HHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc--------hhHHHHHHHHHHc------CCCCEEEeccCc
Confidence 122222222221 2468999999999864211 1123445555432 123466678888
Q ss_pred CCCcH-HHHhccCccccccCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHccCCCHHHHHHHHHHH
Q 001746 880 FDLDD-AVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLKNLCIAA 945 (1018)
Q Consensus 880 ~~LD~-aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeGfSgaDL~~L~~~A 945 (1018)
..+.. .+++|+ ..|.|+.|+..++..+++.++...++. ++..+..|+..+.| |++.+++..
T Consensus 141 ~~~~~k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain~L 203 (482)
T PRK04195 141 YDPSLRELRNAC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAINDL 203 (482)
T ss_pred cccchhhHhccc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHH
Confidence 88887 666666 678999999999999999999877654 34457777776654 566555433
No 112
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.47 E-value=1.1e-12 Score=158.43 Aligned_cols=184 Identities=24% Similarity=0.259 Sum_probs=133.3
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 791 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~-------------- 791 (1018)
.+|+||+|.+.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+++.
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~-------------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C 79 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDL-------------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNC 79 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHH
Confidence 5799999999999999888743 1234568999999999999999999998652
Q ss_pred ----------EEEEeccccchhhhhhHHHHHHHHHHHH----HhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHh
Q 001746 792 ----------FISITGSTLTSKWFGDAEKLTKALFSFA----SKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 857 (1018)
Q Consensus 792 ----------fi~Is~seL~s~~~ge~ek~I~~lF~~A----~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~ 857 (1018)
++.++..+- .....++.+...+ ......|+||||+|.|.. ...|.||.
T Consensus 80 ~~i~~g~~~D~ieidaas~------~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~------------~a~NALLK 141 (647)
T PRK07994 80 REIEQGRFVDLIEIDAASR------TKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR------------HSFNALLK 141 (647)
T ss_pred HHHHcCCCCCceeeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH------------HHHHHHHH
Confidence 344443320 0112233333332 223456999999999842 23567777
Q ss_pred hhccccccCCCcEEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHccCCCHH
Q 001746 858 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGS 936 (1018)
Q Consensus 858 ~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeGfSga 936 (1018)
.|..- ...+.+|.+|+.+..|.+.+++|+ ..+.|..++.++...+|+.++..+++. ++..+..|+..+.| +.+
T Consensus 142 tLEEP----p~~v~FIL~Tt~~~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G-s~R 215 (647)
T PRK07994 142 TLEEP----PEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADG-SMR 215 (647)
T ss_pred HHHcC----CCCeEEEEecCCccccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 76553 345777777888999999999998 788999999999999999988776654 34457788888887 777
Q ss_pred HHHHHHHHHH
Q 001746 937 DLKNLCIAAA 946 (1018)
Q Consensus 937 DL~~L~~~Aa 946 (1018)
+..+++..|.
T Consensus 216 ~Al~lldqai 225 (647)
T PRK07994 216 DALSLTDQAI 225 (647)
T ss_pred HHHHHHHHHH
Confidence 7777776554
No 113
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=1.2e-12 Score=160.68 Aligned_cols=184 Identities=23% Similarity=0.256 Sum_probs=132.0
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 791 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~-------------- 791 (1018)
.+|++|+|.+.++..|+.++.. -+.+..+||+||||||||++|+++|+.+++.
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~-------------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC 79 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQ-------------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSC 79 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHh-------------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHH
Confidence 5799999999999999888743 1234567999999999999999999998653
Q ss_pred ----------EEEEeccccchhhhhhHHHHHHHHHHHHH----hcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHh
Q 001746 792 ----------FISITGSTLTSKWFGDAEKLTKALFSFAS----KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 857 (1018)
Q Consensus 792 ----------fi~Is~seL~s~~~ge~ek~I~~lF~~A~----k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~ 857 (1018)
++.++..+ ......++.+...+. .....||||||+|.|. ....+.|+.
T Consensus 80 ~~i~~g~~~DviEidAas------~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT------------~eAqNALLK 141 (944)
T PRK14949 80 VEIAQGRFVDLIEVDAAS------RTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS------------RSSFNALLK 141 (944)
T ss_pred HHHhcCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC------------HHHHHHHHH
Confidence 12222211 011122344433332 2234699999999983 234567777
Q ss_pred hhccccccCCCcEEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHccCCCHH
Q 001746 858 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGS 936 (1018)
Q Consensus 858 ~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeGfSga 936 (1018)
.|... ...+.+|.+|+.+..|.+.|++|+ ..+.|..++.++..++|+.++...++. .+..+..|+..+.| +.+
T Consensus 142 tLEEP----P~~vrFILaTTe~~kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d~R 215 (944)
T PRK14949 142 TLEEP----PEHVKFLLATTDPQKLPVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-SMR 215 (944)
T ss_pred HHhcc----CCCeEEEEECCCchhchHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 77553 235667777888888999999999 678999999999999999988776543 33457888888887 778
Q ss_pred HHHHHHHHHH
Q 001746 937 DLKNLCIAAA 946 (1018)
Q Consensus 937 DL~~L~~~Aa 946 (1018)
++.++|..|.
T Consensus 216 ~ALnLLdQal 225 (944)
T PRK14949 216 DALSLTDQAI 225 (944)
T ss_pred HHHHHHHHHH
Confidence 8888876554
No 114
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.47 E-value=1.6e-12 Score=153.92 Aligned_cols=186 Identities=23% Similarity=0.249 Sum_probs=136.6
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 791 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~-------------- 791 (1018)
.+|+|++|.+.+.+.|...+.. .+.+..+||+||||||||++|+++|+.+++.
T Consensus 18 ~~f~dliGq~~vv~~L~~ai~~-------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~ 84 (507)
T PRK06645 18 SNFAELQGQEVLVKVLSYTILN-------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQ 84 (507)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCC
Confidence 5799999999999999887633 1335679999999999999999999998642
Q ss_pred --------------EEEEeccccchhhhhhHHHHHHHHHHHHHhc----CCeEEEecchhhhhhccCCCcchHHHHHHHH
Q 001746 792 --------------FISITGSTLTSKWFGDAEKLTKALFSFASKL----APVIIFVDEVDSLLGARGGAFEHEATRRMRN 853 (1018)
Q Consensus 792 --------------fi~Is~seL~s~~~ge~ek~I~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~e~~~~il~ 853 (1018)
++.+++.+ ......++.+++.+... ...|++|||+|.+.. ...+
T Consensus 85 C~~C~~i~~~~h~Dv~eidaas------~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~------------~a~n 146 (507)
T PRK06645 85 CTNCISFNNHNHPDIIEIDAAS------KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK------------GAFN 146 (507)
T ss_pred ChHHHHHhcCCCCcEEEeeccC------CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH------------HHHH
Confidence 22222211 11234566666665432 246999999998832 2245
Q ss_pred HHHhhhccccccCCCcEEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHccC
Q 001746 854 EFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEG 932 (1018)
Q Consensus 854 ~LL~~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeG 932 (1018)
.|+..++.. ...+++|.+|+.+..+.+.+++|+ ..+.+..++.++...+++..+..+++. ++..+..|+..+.|
T Consensus 147 aLLk~LEep----p~~~vfI~aTte~~kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G 221 (507)
T PRK06645 147 ALLKTLEEP----PPHIIFIFATTEVQKIPATIISRC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG 221 (507)
T ss_pred HHHHHHhhc----CCCEEEEEEeCChHHhhHHHHhcc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 666666532 345677777788888999999999 578899999999999999999877754 33457888988887
Q ss_pred CCHHHHHHHHHHHHHH
Q 001746 933 YSGSDLKNLCIAAAYR 948 (1018)
Q Consensus 933 fSgaDL~~L~~~Aa~~ 948 (1018)
+.+++.+++..++..
T Consensus 222 -slR~al~~Ldkai~~ 236 (507)
T PRK06645 222 -SARDAVSILDQAASM 236 (507)
T ss_pred -CHHHHHHHHHHHHHh
Confidence 888888888877543
No 115
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.47 E-value=1.6e-12 Score=150.12 Aligned_cols=186 Identities=18% Similarity=0.234 Sum_probs=126.2
Q ss_pred ccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---------------
Q 001746 727 RFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN--------------- 791 (1018)
Q Consensus 727 tfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~--------------- 791 (1018)
.|++|+|.+.+++.|+..+......+..+ + ...++.+||+||||+|||++|+++|+.+.+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~---~-~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~ 78 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAA---G-SGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRT 78 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccccccc---C-CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Confidence 58999999999999999997643322211 1 2346789999999999999999999987442
Q ss_pred --------EEEEeccccchhhhhhHHHHHHHHHHHHHhc----CCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhh
Q 001746 792 --------FISITGSTLTSKWFGDAEKLTKALFSFASKL----APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAW 859 (1018)
Q Consensus 792 --------fi~Is~seL~s~~~ge~ek~I~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~L 859 (1018)
+..+.+.. .. -.-..++.++..+... ...|+||||+|.+... ..+.|+..|
T Consensus 79 ~~~~~hpD~~~i~~~~-~~----i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~------------aanaLLk~L 141 (394)
T PRK07940 79 VLAGTHPDVRVVAPEG-LS----IGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTER------------AANALLKAV 141 (394)
T ss_pred HhcCCCCCEEEecccc-cc----CCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH------------HHHHHHHHh
Confidence 12222211 00 1123467777766542 2359999999998422 235677766
Q ss_pred ccccccCCCcEEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHccCCCHHHHH
Q 001746 860 DGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLK 939 (1018)
Q Consensus 860 dgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeGfSgaDL~ 939 (1018)
+.. +...++|+ +|+.++.+.+.+++|+ ..+.|+.|+.++..++|... .++. ......++..+.|..+..+.
T Consensus 142 Eep---~~~~~fIL-~a~~~~~llpTIrSRc-~~i~f~~~~~~~i~~~L~~~---~~~~-~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 142 EEP---PPRTVWLL-CAPSPEDVLPTIRSRC-RHVALRTPSVEAVAEVLVRR---DGVD-PETARRAARASQGHIGRARR 212 (394)
T ss_pred hcC---CCCCeEEE-EECChHHChHHHHhhC-eEEECCCCCHHHHHHHHHHh---cCCC-HHHHHHHHHHcCCCHHHHHH
Confidence 543 23344444 4555899999999999 68999999999888777632 2333 34567788899998776655
Q ss_pred HHH
Q 001746 940 NLC 942 (1018)
Q Consensus 940 ~L~ 942 (1018)
-+.
T Consensus 213 l~~ 215 (394)
T PRK07940 213 LAT 215 (394)
T ss_pred Hhc
Confidence 443
No 116
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.46 E-value=4.8e-12 Score=145.27 Aligned_cols=224 Identities=19% Similarity=0.243 Sum_probs=145.3
Q ss_pred cccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccch
Q 001746 728 FDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA-----GANFISITGSTLTS 802 (1018)
Q Consensus 728 fdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~el-----g~~fi~Is~seL~s 802 (1018)
.+.+.|.++..++|...+...+. + ..+.+++|+||||||||++++.+++++ ++.++++++....+
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~-------~---~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~ 98 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALR-------G---SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT 98 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhC-------C---CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence 34678889888888887743221 1 123569999999999999999999887 57889998864322
Q ss_pred h----------hhh--------hHHHHHHHHHHHHHh-cCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhcccc
Q 001746 803 K----------WFG--------DAEKLTKALFSFASK-LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR 863 (1018)
Q Consensus 803 ~----------~~g--------e~ek~I~~lF~~A~k-~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~ 863 (1018)
. ..+ .....+..++..... ..+.||+|||+|.+..... ..++..|+..+...
T Consensus 99 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~--------~~~l~~l~~~~~~~- 169 (394)
T PRK00411 99 RYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG--------NDVLYSLLRAHEEY- 169 (394)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC--------chHHHHHHHhhhcc-
Confidence 1 111 112333333333332 3568999999999972211 12345555555443
Q ss_pred ccCCCcEEEEEecCCCC---CCcHHHHhccC-ccccccCCCHHHHHHHHHHHHhcc---CCCCcccHHHHHHHccCCC--
Q 001746 864 SKESQKILILGATNRPF---DLDDAVIRRLP-RRIYVDLPDAENRMKILRIFLAHE---SLESGFQFNELANATEGYS-- 934 (1018)
Q Consensus 864 ~~~~~~VlVIaTTN~p~---~LD~aLlrRFd-~~I~V~lPd~eeR~eILk~~L~~~---~l~~dvdl~~LA~~TeGfS-- 934 (1018)
...++.+|+++|.+. .+++.+.+||. ..+.+++++.++..+|++..+... ...++..++.+++.+.+.+
T Consensus 170 --~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd 247 (394)
T PRK00411 170 --PGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGD 247 (394)
T ss_pred --CCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCc
Confidence 223688888887664 47788888774 568899999999999999887532 1223444677787775432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHHhhCCC
Q 001746 935 GSDLKNLCIAAAYRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQSKAKVGPS 987 (1018)
Q Consensus 935 gaDL~~L~~~Aa~~Airr~~~~~~~~~~~~~~~~~rpLT~eDF~~Al~kv~PS 987 (1018)
.+.+..+|..|+..|..+. ...|+.+|+..|+.++.++
T Consensus 248 ~r~a~~ll~~a~~~a~~~~---------------~~~I~~~~v~~a~~~~~~~ 285 (394)
T PRK00411 248 ARVAIDLLRRAGLIAEREG---------------SRKVTEEDVRKAYEKSEIV 285 (394)
T ss_pred HHHHHHHHHHHHHHHHHcC---------------CCCcCHHHHHHHHHHHHHH
Confidence 3444566666665544320 1358999999988887543
No 117
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.46 E-value=6.7e-13 Score=166.67 Aligned_cols=183 Identities=23% Similarity=0.367 Sum_probs=133.9
Q ss_pred ccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 001746 727 RFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA----------GANFISIT 796 (1018)
Q Consensus 727 tfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~el----------g~~fi~Is 796 (1018)
.++.++|.++....+.+.+.. +...+++|+||||||||++++++|..+ +.+++.++
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r--------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~ 236 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALD 236 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhc--------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEee
Confidence 577899999876666655421 123568999999999999999999986 67788888
Q ss_pred ccccc--hhhhhhHHHHHHHHHHHHHhc-CCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEE
Q 001746 797 GSTLT--SKWFGDAEKLTKALFSFASKL-APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILIL 873 (1018)
Q Consensus 797 ~seL~--s~~~ge~ek~I~~lF~~A~k~-~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVI 873 (1018)
+..+. ..|.|+.+..++.+|..+.+. .+.|||||||+.|.+........ ...+.|...+ ....+.+|
T Consensus 237 ~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~----d~~~~Lk~~l------~~g~i~~I 306 (852)
T TIGR03346 237 MGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAM----DAGNMLKPAL------ARGELHCI 306 (852)
T ss_pred HHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchh----HHHHHhchhh------hcCceEEE
Confidence 88775 457788999999999998664 58999999999998644322111 1222222222 23468899
Q ss_pred EecCCC-----CCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCC-----CcccHHHHHHHccCCC
Q 001746 874 GATNRP-----FDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-----SGFQFNELANATEGYS 934 (1018)
Q Consensus 874 aTTN~p-----~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-----~dvdl~~LA~~TeGfS 934 (1018)
|+|+.. ..+|+++.|||. .|.++.|+.+++..||+.+....... .+..+..++..+.+|-
T Consensus 307 gaTt~~e~r~~~~~d~al~rRf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi 376 (852)
T TIGR03346 307 GATTLDEYRKYIEKDAALERRFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYI 376 (852)
T ss_pred EeCcHHHHHHHhhcCHHHHhcCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccc
Confidence 998766 458999999995 68899999999999999886654432 3334666677776654
No 118
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.46 E-value=7.4e-13 Score=151.96 Aligned_cols=178 Identities=27% Similarity=0.402 Sum_probs=134.4
Q ss_pred ccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch-hhhh-hH
Q 001746 731 IGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS-KWFG-DA 808 (1018)
Q Consensus 731 IgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~s-~~~g-e~ 808 (1018)
|+|+++.+..+...+...+++..+......-..+.+|||+||||||||++|+++|..++.+|+.++++.+.. .|.| +.
T Consensus 17 IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~ 96 (443)
T PRK05201 17 IIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 96 (443)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCH
Confidence 789999999999888665444332211111123578999999999999999999999999999999998875 6888 55
Q ss_pred HHHHHHHHHHHH--------------------------------------------------------------------
Q 001746 809 EKLTKALFSFAS-------------------------------------------------------------------- 820 (1018)
Q Consensus 809 ek~I~~lF~~A~-------------------------------------------------------------------- 820 (1018)
+..++.+|..|.
T Consensus 97 e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~ 176 (443)
T PRK05201 97 ESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEIE 176 (443)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEEE
Confidence 777777777771
Q ss_pred --h--------------------------------------------------------------------cCCeEEEec
Q 001746 821 --K--------------------------------------------------------------------LAPVIIFVD 830 (1018)
Q Consensus 821 --k--------------------------------------------------------------------~~PsIIfID 830 (1018)
. -.-.|||||
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfiD 256 (443)
T PRK05201 177 VAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFID 256 (443)
T ss_pred ecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEE
Confidence 0 134699999
Q ss_pred chhhhhhccCCCcchHHHHHHHHHHHhhhcccc------ccCCCcEEEEEec----CCCCCCcHHHHhccCccccccCCC
Q 001746 831 EVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR------SKESQKILILGAT----NRPFDLDDAVIRRLPRRIYVDLPD 900 (1018)
Q Consensus 831 EID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~------~~~~~~VlVIaTT----N~p~~LD~aLlrRFd~~I~V~lPd 900 (1018)
|||.++....+.........+.+.||..+.|-. .-+...+++||+. ..|.+|-|.+.-||+.++.+..++
T Consensus 257 EiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~L~ 336 (443)
T PRK05201 257 EIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPIRVELDALT 336 (443)
T ss_pred cchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCCCC
Confidence 999998765432222223457788888888732 1245678999875 567889999999999999999999
Q ss_pred HHHHHHHH
Q 001746 901 AENRMKIL 908 (1018)
Q Consensus 901 ~eeR~eIL 908 (1018)
.++...||
T Consensus 337 ~~dL~~IL 344 (443)
T PRK05201 337 EEDFVRIL 344 (443)
T ss_pred HHHHHHHh
Confidence 99998887
No 119
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.46 E-value=4.4e-13 Score=167.78 Aligned_cols=185 Identities=25% Similarity=0.331 Sum_probs=138.3
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA----------GANFISI 795 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~el----------g~~fi~I 795 (1018)
-.|++++|.++....+.+.+.. +..+++||+||||||||++|+++|..+ +.+++.+
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~r--------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l 241 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILGR--------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL 241 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHcc--------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 3578899999999998887522 233579999999999999999999986 3689999
Q ss_pred eccccc--hhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEE
Q 001746 796 TGSTLT--SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILIL 873 (1018)
Q Consensus 796 s~seL~--s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVI 873 (1018)
++..++ .+|.|+.+..++.+|..+....++|||||||+.|.+.....+... +.+.|...+ ....+.+|
T Consensus 242 ~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~----~a~lLkp~l------~rg~l~~I 311 (821)
T CHL00095 242 DIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAID----AANILKPAL------ARGELQCI 311 (821)
T ss_pred eHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCccc----HHHHhHHHH------hCCCcEEE
Confidence 988876 467889999999999999888899999999999987654322111 112222222 23468889
Q ss_pred EecCCCC-----CCcHHHHhccCccccccCCCHHHHHHHHHHHHhc----cCC-CCcccHHHHHHHccCCCH
Q 001746 874 GATNRPF-----DLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAH----ESL-ESGFQFNELANATEGYSG 935 (1018)
Q Consensus 874 aTTN~p~-----~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~----~~l-~~dvdl~~LA~~TeGfSg 935 (1018)
|+|+..+ ..|+++.+||. .|.++.|+.++...|++.+... ..+ -++..+..++.++.+|.+
T Consensus 312 gaTt~~ey~~~ie~D~aL~rRf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~ 382 (821)
T CHL00095 312 GATTLDEYRKHIEKDPALERRFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIA 382 (821)
T ss_pred EeCCHHHHHHHHhcCHHHHhcce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Confidence 8887653 57899999995 5789999999999998865432 222 234457777888887653
No 120
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=1.8e-12 Score=156.44 Aligned_cols=185 Identities=22% Similarity=0.221 Sum_probs=136.2
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 791 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~-------------- 791 (1018)
.+|+||+|.+.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+++.
T Consensus 13 ~tFddIIGQe~vv~~L~~ai~~-------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sC 79 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNALDE-------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSC 79 (709)
T ss_pred CCHHHHcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHH
Confidence 5799999999999999998743 1345779999999999999999999987542
Q ss_pred ----------EEEEeccccchhhhhhHHHHHHHHHHHHHh----cCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHh
Q 001746 792 ----------FISITGSTLTSKWFGDAEKLTKALFSFASK----LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 857 (1018)
Q Consensus 792 ----------fi~Is~seL~s~~~ge~ek~I~~lF~~A~k----~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~ 857 (1018)
++.++... ......++.++..+.. ....||||||+|.|.. ...+.|+.
T Consensus 80 r~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~------------~A~NALLK 141 (709)
T PRK08691 80 TQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK------------SAFNAMLK 141 (709)
T ss_pred HHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH------------HHHHHHHH
Confidence 22233221 1122345555554422 2346999999998731 23456777
Q ss_pred hhccccccCCCcEEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHccCCCHH
Q 001746 858 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGS 936 (1018)
Q Consensus 858 ~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeGfSga 936 (1018)
.|+.. ...+.+|.+|+.+..+...+++|| ..+.|..++.++...+|+.++..+++. ++..+..|++.+.| +.+
T Consensus 142 tLEEP----p~~v~fILaTtd~~kL~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-slR 215 (709)
T PRK08691 142 TLEEP----PEHVKFILATTDPHKVPVTVLSRC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-SMR 215 (709)
T ss_pred HHHhC----CCCcEEEEEeCCccccchHHHHHH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-CHH
Confidence 66543 235677778888999999999999 678888999999999999999987764 34457888888876 888
Q ss_pred HHHHHHHHHHH
Q 001746 937 DLKNLCIAAAY 947 (1018)
Q Consensus 937 DL~~L~~~Aa~ 947 (1018)
++.+++..++.
T Consensus 216 dAlnLLDqaia 226 (709)
T PRK08691 216 DALSLLDQAIA 226 (709)
T ss_pred HHHHHHHHHHH
Confidence 88888877654
No 121
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=2e-12 Score=152.35 Aligned_cols=185 Identities=20% Similarity=0.222 Sum_probs=137.2
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA--------------- 790 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~--------------- 790 (1018)
.+|+|++|.+.+++.|...+.. -+.+.++||+||+|+|||++|+.+|+.+++
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~-------------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C 76 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTL-------------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNC 76 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHH
Confidence 5899999999999999887633 234578999999999999999999997632
Q ss_pred ---------cEEEEeccccchhhhhhHHHHHHHHHHHHHhc----CCeEEEecchhhhhhccCCCcchHHHHHHHHHHHh
Q 001746 791 ---------NFISITGSTLTSKWFGDAEKLTKALFSFASKL----APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 857 (1018)
Q Consensus 791 ---------~fi~Is~seL~s~~~ge~ek~I~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~ 857 (1018)
.++.+++++-. ....++.+.+.+... ...|++|||+|.|.. ...+.|+.
T Consensus 77 ~~i~~~~~~Dv~eidaas~~------~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~------------~A~NaLLK 138 (491)
T PRK14964 77 ISIKNSNHPDVIEIDAASNT------SVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN------------SAFNALLK 138 (491)
T ss_pred HHHhccCCCCEEEEecccCC------CHHHHHHHHHHHHhccccCCceEEEEeChHhCCH------------HHHHHHHH
Confidence 34566654321 123355555554322 346999999998832 23466777
Q ss_pred hhccccccCCCcEEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHccCCCHH
Q 001746 858 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGS 936 (1018)
Q Consensus 858 ~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeGfSga 936 (1018)
.|+.. ...+.+|.+|+.+..+.+.+++|+ ..+.|..++.++...+++..+..+++. ++..+..|+..+.| +.+
T Consensus 139 ~LEeP----p~~v~fIlatte~~Kl~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-slR 212 (491)
T PRK14964 139 TLEEP----APHVKFILATTEVKKIPVTIISRC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-SMR 212 (491)
T ss_pred HHhCC----CCCeEEEEEeCChHHHHHHHHHhh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 76653 235667777788888999999999 678999999999999999999877754 44557888888876 888
Q ss_pred HHHHHHHHHHH
Q 001746 937 DLKNLCIAAAY 947 (1018)
Q Consensus 937 DL~~L~~~Aa~ 947 (1018)
++.+++..++.
T Consensus 213 ~alslLdqli~ 223 (491)
T PRK14964 213 NALFLLEQAAI 223 (491)
T ss_pred HHHHHHHHHHH
Confidence 88888877654
No 122
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.45 E-value=3.8e-12 Score=134.79 Aligned_cols=185 Identities=18% Similarity=0.221 Sum_probs=119.7
Q ss_pred ccccccc--ChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 001746 726 VRFDDIG--ALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTL 800 (1018)
Q Consensus 726 vtfdDIg--Gle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL 800 (1018)
.+|+++. +.....+.++.++.. ....+++|+||+|||||++|+++++++ +.+++.+++..+
T Consensus 12 ~~~~~~~~~~~~~~~~~l~~~~~~--------------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 12 PTFDNFYAGGNAELLAALRQLAAG--------------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred hhhcCcCcCCcHHHHHHHHHHHhc--------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 4666664 456677777776421 234679999999999999999999887 578888988776
Q ss_pred chhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCC
Q 001746 801 TSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPF 880 (1018)
Q Consensus 801 ~s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~ 880 (1018)
.... ..++.... .+.+|+|||+|.+.... .. ...+...++.... ....+|++++..+.
T Consensus 78 ~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~~~------~~----~~~L~~~l~~~~~--~~~~iIits~~~~~ 135 (226)
T TIGR03420 78 AQAD--------PEVLEGLE--QADLVCLDDVEAIAGQP------EW----QEALFHLYNRVRE--AGGRLLIAGRAAPA 135 (226)
T ss_pred HHhH--------HHHHhhcc--cCCEEEEeChhhhcCCh------HH----HHHHHHHHHHHHH--cCCeEEEECCCChH
Confidence 5432 12222222 34699999999884321 00 1223333332211 12344444444444
Q ss_pred CCc---HHHHhccC--ccccccCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHccCCCHHHHHHHHHHHHH
Q 001746 881 DLD---DAVIRRLP--RRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLKNLCIAAAY 947 (1018)
Q Consensus 881 ~LD---~aLlrRFd--~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeGfSgaDL~~L~~~Aa~ 947 (1018)
.++ +.+.+||. ..+.++.|+.+++..+++.++....+. ++..+..|+.... -+.+++.++++.+..
T Consensus 136 ~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~-gn~r~L~~~l~~~~~ 207 (226)
T TIGR03420 136 QLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGS-RDMGSLMALLDALDR 207 (226)
T ss_pred HCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHH
Confidence 432 77888874 678899999999999999887655443 3444677777654 488999998877553
No 123
>PRK06893 DNA replication initiation factor; Validated
Probab=99.44 E-value=2.4e-12 Score=138.29 Aligned_cols=180 Identities=16% Similarity=0.177 Sum_probs=114.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCC
Q 001746 765 KGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGG 841 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~ 841 (1018)
..++||||||||||+|++|+|+++ +....+++..... .....++... .+..+|+|||++.+.+...
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~~--~~~dlLilDDi~~~~~~~~- 108 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ--------YFSPAVLENL--EQQDLVCLDDLQAVIGNEE- 108 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh--------hhhHHHHhhc--ccCCEEEEeChhhhcCChH-
Confidence 358999999999999999999986 3445555443211 1111222222 2458999999999864321
Q ss_pred CcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCc---HHHHhccC--ccccccCCCHHHHHHHHHHHHhccC
Q 001746 842 AFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLD---DAVIRRLP--RRIYVDLPDAENRMKILRIFLAHES 916 (1018)
Q Consensus 842 ~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~LD---~aLlrRFd--~~I~V~lPd~eeR~eILk~~L~~~~ 916 (1018)
.. ..++..++.... .+..++|++++..|..++ +.+.+|+. ..+.++.|+.++|.+|++..+...+
T Consensus 109 ------~~---~~l~~l~n~~~~-~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~ 178 (229)
T PRK06893 109 ------WE---LAIFDLFNRIKE-QGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRG 178 (229)
T ss_pred ------HH---HHHHHHHHHHHH-cCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcC
Confidence 11 123333433322 123455666666676655 78998764 5778999999999999998887555
Q ss_pred CC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHH
Q 001746 917 LE-SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQSKA 982 (1018)
Q Consensus 917 l~-~dvdl~~LA~~TeGfSgaDL~~L~~~Aa~~Airr~~~~~~~~~~~~~~~~~rpLT~eDF~~Al~ 982 (1018)
+. ++..+..|+....| +.+.+..++......++.+ .++||.+.+++++.
T Consensus 179 l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~~~~----------------~~~it~~~v~~~L~ 228 (229)
T PRK06893 179 IELSDEVANFLLKRLDR-DMHTLFDALDLLDKASLQA----------------QRKLTIPFVKEILG 228 (229)
T ss_pred CCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhc----------------CCCCCHHHHHHHhc
Confidence 43 44457788888775 6677776665432211110 15689888887763
No 124
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.43 E-value=7e-12 Score=135.27 Aligned_cols=205 Identities=12% Similarity=0.078 Sum_probs=125.9
Q ss_pred Cccccccc--ChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEeccc
Q 001746 725 GVRFDDIG--ALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAG---ANFISITGST 799 (1018)
Q Consensus 725 ~vtfdDIg--Gle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg---~~fi~Is~se 799 (1018)
..+|+++. +.......+...... ....+++||||||||||+|++++++++. ..+.+++...
T Consensus 18 ~~~fd~f~~~~n~~a~~~l~~~~~~--------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 18 DETFASFYPGDNDSLLAALQNALRQ--------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred cCCccccccCccHHHHHHHHHHHhC--------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 45777765 344555666554422 1124699999999999999999998863 4455555543
Q ss_pred cchhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCc-EEEEEecCC
Q 001746 800 LTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQK-ILILGATNR 878 (1018)
Q Consensus 800 L~s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~-VlVIaTTN~ 878 (1018)
.... ...+..... ...+|+||||+.+.++.. .. .+|...++... +..+ .+|+++++.
T Consensus 84 ~~~~--------~~~~~~~~~--~~dlliiDdi~~~~~~~~------~~----~~lf~l~n~~~--e~g~~~li~ts~~~ 141 (235)
T PRK08084 84 RAWF--------VPEVLEGME--QLSLVCIDNIECIAGDEL------WE----MAIFDLYNRIL--ESGRTRLLITGDRP 141 (235)
T ss_pred Hhhh--------hHHHHHHhh--hCCEEEEeChhhhcCCHH------HH----HHHHHHHHHHH--HcCCCeEEEeCCCC
Confidence 2211 111111111 136899999999854321 11 12222222221 1223 455555566
Q ss_pred CCC---CcHHHHhccC--ccccccCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHH
Q 001746 879 PFD---LDDAVIRRLP--RRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQE 952 (1018)
Q Consensus 879 p~~---LD~aLlrRFd--~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeGfSgaDL~~L~~~Aa~~Airr 952 (1018)
|.. +.+.+++|+. ..+.+..|+.+++.++++......++. ++.-++.|+....| +.+.+..+++.....++.+
T Consensus 142 p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~l~~ 220 (235)
T PRK08084 142 PRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQLDRASITA 220 (235)
T ss_pred hHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHhc
Confidence 655 5789999986 567788899999999999866655443 44457888888876 7787877776543222111
Q ss_pred HHHHHHhcCCCCCCCCccCCCHHHHHHHHH
Q 001746 953 LLEEERKRGKNDAAPVLRPLKLEDFIQSKA 982 (1018)
Q Consensus 953 ~~~~~~~~~~~~~~~~~rpLT~eDF~~Al~ 982 (1018)
.++||++.+.+++.
T Consensus 221 ----------------~~~it~~~~k~~l~ 234 (235)
T PRK08084 221 ----------------QRKLTIPFVKEILK 234 (235)
T ss_pred ----------------CCCCCHHHHHHHHc
Confidence 15688888887763
No 125
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=2.8e-12 Score=153.20 Aligned_cols=185 Identities=22% Similarity=0.245 Sum_probs=133.8
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 791 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~-------------- 791 (1018)
.+|+||+|.+.+++.|...+.. .+.++.+||+||||+|||++|+++|+.+++.
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~-------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C 79 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQ-------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSAC 79 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHc-------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 5799999999999999988743 1334668999999999999999999998652
Q ss_pred ----------EEEEeccccchhhhhhHHHHHHHHHHHHHhc----CCeEEEecchhhhhhccCCCcchHHHHHHHHHHHh
Q 001746 792 ----------FISITGSTLTSKWFGDAEKLTKALFSFASKL----APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 857 (1018)
Q Consensus 792 ----------fi~Is~seL~s~~~ge~ek~I~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~ 857 (1018)
++.+++.. ......++.+...+... ...|+||||+|.+.. ...+.|+.
T Consensus 80 ~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~------------~a~naLLK 141 (527)
T PRK14969 80 LEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK------------SAFNAMLK 141 (527)
T ss_pred HHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH------------HHHHHHHH
Confidence 23333221 11233455555555322 235999999998842 23466777
Q ss_pred hhccccccCCCcEEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHccCCCHH
Q 001746 858 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGS 936 (1018)
Q Consensus 858 ~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeGfSga 936 (1018)
.++.. ...+.+|.+|+.+..+.+.+++|+ ..+.|..|+.++....+...+..+++. ++..+..|+..+.| +.+
T Consensus 142 ~LEep----p~~~~fIL~t~d~~kil~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-slr 215 (527)
T PRK14969 142 TLEEP----PEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-SMR 215 (527)
T ss_pred HHhCC----CCCEEEEEEeCChhhCchhHHHHH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 76553 235667777777888888899998 788999999999999999988876654 33456778888776 778
Q ss_pred HHHHHHHHHHH
Q 001746 937 DLKNLCIAAAY 947 (1018)
Q Consensus 937 DL~~L~~~Aa~ 947 (1018)
++.+++..|..
T Consensus 216 ~al~lldqai~ 226 (527)
T PRK14969 216 DALSLLDQAIA 226 (527)
T ss_pred HHHHHHHHHHH
Confidence 88888876653
No 126
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.43 E-value=3.7e-12 Score=142.61 Aligned_cols=183 Identities=19% Similarity=0.209 Sum_probs=119.6
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecccc
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAG-----ANFISITGSTL 800 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg-----~~fi~Is~seL 800 (1018)
.+|+++.|.+.+++.|..++.. + ...++||+||||||||++|+++|+++. .+++.+++.++
T Consensus 12 ~~~~~~~g~~~~~~~L~~~~~~-----------~---~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~ 77 (337)
T PRK12402 12 ALLEDILGQDEVVERLSRAVDS-----------P---NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADF 77 (337)
T ss_pred CcHHHhcCCHHHHHHHHHHHhC-----------C---CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhh
Confidence 5699999999999999887632 1 113699999999999999999999883 35677887665
Q ss_pred chhhh-------------hh-------HHHHHHHHHHHHHh-----cCCeEEEecchhhhhhccCCCcchHHHHHHHHHH
Q 001746 801 TSKWF-------------GD-------AEKLTKALFSFASK-----LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEF 855 (1018)
Q Consensus 801 ~s~~~-------------ge-------~ek~I~~lF~~A~k-----~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~L 855 (1018)
..... +. ....++.+...... ..+.+|+|||+|.+... ..+.|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~------------~~~~L 145 (337)
T PRK12402 78 FDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRED------------AQQAL 145 (337)
T ss_pred hhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHH------------HHHHH
Confidence 32210 00 11223333222222 23469999999987321 12334
Q ss_pred HhhhccccccCCCcEEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHccCCC
Q 001746 856 MSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYS 934 (1018)
Q Consensus 856 L~~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeGfS 934 (1018)
...++... . ...+|.+++.+..+.+.+.+|+ ..+.+.+|+.++...+++..+...++. ++..+..|+..+.| +
T Consensus 146 ~~~le~~~---~-~~~~Il~~~~~~~~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~g-d 219 (337)
T PRK12402 146 RRIMEQYS---R-TCRFIIATRQPSKLIPPIRSRC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGG-D 219 (337)
T ss_pred HHHHHhcc---C-CCeEEEEeCChhhCchhhcCCc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 44444331 1 2334556666667778888897 578899999999999999988876654 44457777776643 4
Q ss_pred HHHHHH
Q 001746 935 GSDLKN 940 (1018)
Q Consensus 935 gaDL~~ 940 (1018)
.+++.+
T Consensus 220 lr~l~~ 225 (337)
T PRK12402 220 LRKAIL 225 (337)
T ss_pred HHHHHH
Confidence 444433
No 127
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=4.8e-12 Score=150.28 Aligned_cols=184 Identities=19% Similarity=0.235 Sum_probs=131.3
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 791 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~-------------- 791 (1018)
.+|+||.|.+.+++.|..++.. .+.+..+||+||||||||++|+++|+.+.+.
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~-------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~ 77 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQ-------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL 77 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH
Confidence 5799999999999999988743 1234567999999999999999999988531
Q ss_pred ---------EEEEeccccchhhhhhHHHHHHHHHHHHHh----cCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhh
Q 001746 792 ---------FISITGSTLTSKWFGDAEKLTKALFSFASK----LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSA 858 (1018)
Q Consensus 792 ---------fi~Is~seL~s~~~ge~ek~I~~lF~~A~k----~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ 858 (1018)
++.+++..- .....++.+...+.. ..+.||+|||+|.+. ....+.|+..
T Consensus 78 ~i~~~~h~dv~el~~~~~------~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls------------~~a~naLLk~ 139 (504)
T PRK14963 78 AVRRGAHPDVLEIDAASN------NSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS------------KSAFNALLKT 139 (504)
T ss_pred HHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCCeEEEEECccccC------------HHHHHHHHHH
Confidence 444444311 112234444333322 245799999999763 2234566666
Q ss_pred hccccccCCCcEEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHccCCCHHH
Q 001746 859 WDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSD 937 (1018)
Q Consensus 859 Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeGfSgaD 937 (1018)
++.. ...+++|.+|+.+..+.+.+.+|+ ..+.|..|+.++...+++.++...++. ++..+..|+..+.| ..++
T Consensus 140 LEep----~~~t~~Il~t~~~~kl~~~I~SRc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G-dlR~ 213 (504)
T PRK14963 140 LEEP----PEHVIFILATTEPEKMPPTILSRT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG-AMRD 213 (504)
T ss_pred HHhC----CCCEEEEEEcCChhhCChHHhcce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 5442 235677777888899999999998 578999999999999999999877764 34457788888876 6677
Q ss_pred HHHHHHHHH
Q 001746 938 LKNLCIAAA 946 (1018)
Q Consensus 938 L~~L~~~Aa 946 (1018)
+.++++.+.
T Consensus 214 aln~Lekl~ 222 (504)
T PRK14963 214 AESLLERLL 222 (504)
T ss_pred HHHHHHHHH
Confidence 777666553
No 128
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=6e-12 Score=151.20 Aligned_cols=186 Identities=19% Similarity=0.248 Sum_probs=128.9
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 791 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~-------------- 791 (1018)
.+|+||+|.+.+++.|..++.. -+.+..+||+||||+|||++|+++|+.+.+.
T Consensus 13 ~sf~dIiGQe~v~~~L~~ai~~-------------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC 79 (624)
T PRK14959 13 QTFAEVAGQETVKAILSRAAQE-------------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQC 79 (624)
T ss_pred CCHHHhcCCHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHH
Confidence 5799999999999999988743 1223579999999999999999999998652
Q ss_pred ----------EEEEeccccchhhhhhHHHHHHHHHHH-HHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhc
Q 001746 792 ----------FISITGSTLTSKWFGDAEKLTKALFSF-ASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWD 860 (1018)
Q Consensus 792 ----------fi~Is~seL~s~~~ge~ek~I~~lF~~-A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ld 860 (1018)
++.+++..- ........ +...+.. .......||||||+|.|.. ...+.|+..|+
T Consensus 80 ~~i~~g~hpDv~eId~a~~--~~Id~iR~-L~~~~~~~p~~g~~kVIIIDEad~Lt~------------~a~naLLk~LE 144 (624)
T PRK14959 80 RKVTQGMHVDVVEIDGASN--RGIDDAKR-LKEAIGYAPMEGRYKVFIIDEAHMLTR------------EAFNALLKTLE 144 (624)
T ss_pred HHHhcCCCCceEEEecccc--cCHHHHHH-HHHHHHhhhhcCCceEEEEEChHhCCH------------HHHHHHHHHhh
Confidence 444443211 11112222 2222222 1223457999999999842 22466776665
Q ss_pred cccccCCCcEEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHccCCCHHHHH
Q 001746 861 GLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLK 939 (1018)
Q Consensus 861 gl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeGfSgaDL~ 939 (1018)
.. ...+++|.+|+.+..+...+++|+ ..+.|+.++.++...+|+..+...++. ++..+..|+..+.| +.+++.
T Consensus 145 EP----~~~~ifILaTt~~~kll~TI~SRc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~G-dlR~Al 218 (624)
T PRK14959 145 EP----PARVTFVLATTEPHKFPVTIVSRC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAG-SVRDSM 218 (624)
T ss_pred cc----CCCEEEEEecCChhhhhHHHHhhh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 42 235777788888889999999998 578999999999999999888876642 44457778887775 555555
Q ss_pred HHHHHH
Q 001746 940 NLCIAA 945 (1018)
Q Consensus 940 ~L~~~A 945 (1018)
+++..+
T Consensus 219 ~lLeql 224 (624)
T PRK14959 219 SLLGQV 224 (624)
T ss_pred HHHHHH
Confidence 555543
No 129
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=6.1e-12 Score=150.04 Aligned_cols=184 Identities=20% Similarity=0.237 Sum_probs=130.3
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA--------------- 790 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~--------------- 790 (1018)
.+|+|++|.+.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+.+
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~-------------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC 79 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALET-------------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENC 79 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 5799999999999999887743 123456899999999999999999998854
Q ss_pred ---------cEEEEeccccchhhhhhHHHHHHHHHHHHH----hcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHh
Q 001746 791 ---------NFISITGSTLTSKWFGDAEKLTKALFSFAS----KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 857 (1018)
Q Consensus 791 ---------~fi~Is~seL~s~~~ge~ek~I~~lF~~A~----k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~ 857 (1018)
.++.++...-. + ...++.+...+. .....|+||||+|.+.. ...+.|+.
T Consensus 80 ~~i~~~~~~dlieidaas~~----g--vd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~------------~a~naLLK 141 (546)
T PRK14957 80 VAINNNSFIDLIEIDAASRT----G--VEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK------------QSFNALLK 141 (546)
T ss_pred HHHhcCCCCceEEeeccccc----C--HHHHHHHHHHHHhhhhcCCcEEEEEechhhccH------------HHHHHHHH
Confidence 23334332111 1 112333333332 22356999999998842 23456777
Q ss_pred hhccccccCCCcEEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHccCCCHH
Q 001746 858 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGS 936 (1018)
Q Consensus 858 ~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeGfSga 936 (1018)
.|+.. ...+.+|.+|+.+..+.+.+++|+ ..+.|..++.++...+++..+..+++. ++..+..|+..+.| +.+
T Consensus 142 ~LEep----p~~v~fIL~Ttd~~kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~G-dlR 215 (546)
T PRK14957 142 TLEEP----PEYVKFILATTDYHKIPVTILSRC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKG-SLR 215 (546)
T ss_pred HHhcC----CCCceEEEEECChhhhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 66543 234666666667888888899999 788999999999999999988876654 44456778888865 778
Q ss_pred HHHHHHHHHH
Q 001746 937 DLKNLCIAAA 946 (1018)
Q Consensus 937 DL~~L~~~Aa 946 (1018)
++.+++..++
T Consensus 216 ~alnlLek~i 225 (546)
T PRK14957 216 DALSLLDQAI 225 (546)
T ss_pred HHHHHHHHHH
Confidence 8888877665
No 130
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.42 E-value=5.9e-12 Score=151.40 Aligned_cols=184 Identities=21% Similarity=0.294 Sum_probs=134.1
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA--------------- 790 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~--------------- 790 (1018)
.+|+|+.|.+.+.+.|+..+.. .+.++.+||+||+|||||++|+.+|+.+.+
T Consensus 13 ~~f~~viGq~~v~~~L~~~i~~-------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C 79 (559)
T PRK05563 13 QTFEDVVGQEHITKTLKNAIKQ-------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEIC 79 (559)
T ss_pred CcHHhccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHH
Confidence 5899999999999999998743 133467999999999999999999998743
Q ss_pred ---------cEEEEeccccchhhhhhHHHHHHHHHHHHHh----cCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHh
Q 001746 791 ---------NFISITGSTLTSKWFGDAEKLTKALFSFASK----LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 857 (1018)
Q Consensus 791 ---------~fi~Is~seL~s~~~ge~ek~I~~lF~~A~k----~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~ 857 (1018)
+++.+++.. ......++.+...+.. ....|++|||+|.|.. ...+.|+.
T Consensus 80 ~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~------------~a~naLLK 141 (559)
T PRK05563 80 KAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST------------GAFNALLK 141 (559)
T ss_pred HHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH------------HHHHHHHH
Confidence 344554432 1223445566555442 2346999999998832 23556776
Q ss_pred hhccccccCCCcEEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHccCCCHH
Q 001746 858 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGS 936 (1018)
Q Consensus 858 ~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeGfSga 936 (1018)
.++.. ...+++|.+|+.+..+.+.+++|+ ..+.|..|+.++...+++.++...++. ++..+..++..+.| +.+
T Consensus 142 tLEep----p~~~ifIlatt~~~ki~~tI~SRc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~~R 215 (559)
T PRK05563 142 TLEEP----PAHVIFILATTEPHKIPATILSRC-QRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-GMR 215 (559)
T ss_pred HhcCC----CCCeEEEEEeCChhhCcHHHHhHh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 66543 234666666778899999999998 567899999999999999998877654 33457778888876 777
Q ss_pred HHHHHHHHHH
Q 001746 937 DLKNLCIAAA 946 (1018)
Q Consensus 937 DL~~L~~~Aa 946 (1018)
++.+++..+.
T Consensus 216 ~al~~Ldq~~ 225 (559)
T PRK05563 216 DALSILDQAI 225 (559)
T ss_pred HHHHHHHHHH
Confidence 7777776554
No 131
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.42 E-value=8.8e-12 Score=132.92 Aligned_cols=199 Identities=19% Similarity=0.226 Sum_probs=127.4
Q ss_pred ccccccc--ChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 001746 726 VRFDDIG--ALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTL 800 (1018)
Q Consensus 726 vtfdDIg--Gle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL 800 (1018)
.+|+++. +.......++++... .....+++|+||+|||||+||+++++++ +.+++.+++..+
T Consensus 15 ~~~d~f~~~~~~~~~~~l~~~~~~-------------~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 15 PTFDNFVAGENAELVARLRELAAG-------------PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred hhhcccccCCcHHHHHHHHHHHhc-------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 6788854 345556666665421 1234679999999999999999999976 678888887664
Q ss_pred chhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCc-EEEEEecCCC
Q 001746 801 TSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQK-ILILGATNRP 879 (1018)
Q Consensus 801 ~s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~-VlVIaTTN~p 879 (1018)
... +. ......+|+|||+|.+... . ...|...++.... ... +++++++..|
T Consensus 82 ~~~------------~~--~~~~~~~liiDdi~~l~~~--------~----~~~L~~~~~~~~~--~~~~~vl~~~~~~~ 133 (227)
T PRK08903 82 LLA------------FD--FDPEAELYAVDDVERLDDA--------Q----QIALFNLFNRVRA--HGQGALLVAGPAAP 133 (227)
T ss_pred HHH------------Hh--hcccCCEEEEeChhhcCch--------H----HHHHHHHHHHHHH--cCCcEEEEeCCCCH
Confidence 321 11 1224679999999987321 1 1223333333221 223 3444444333
Q ss_pred C--CCcHHHHhcc--CccccccCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHH
Q 001746 880 F--DLDDAVIRRL--PRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELL 954 (1018)
Q Consensus 880 ~--~LD~aLlrRF--d~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeGfSgaDL~~L~~~Aa~~Airr~~ 954 (1018)
. .+.+.+++|| ...+.+++|+.+++..+++.+....++. ++..+..|+....| +.+++.++++.-...+...
T Consensus 134 ~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~l~~~~~~~-- 210 (227)
T PRK08903 134 LALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDALDRYSLEQ-- 210 (227)
T ss_pred HhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHh--
Confidence 2 3568888887 4688899999999999998887765543 33456777776555 7788888776533222111
Q ss_pred HHHHhcCCCCCCCCccCCCHHHHHHHHH
Q 001746 955 EEERKRGKNDAAPVLRPLKLEDFIQSKA 982 (1018)
Q Consensus 955 ~~~~~~~~~~~~~~~rpLT~eDF~~Al~ 982 (1018)
.++||+..+.+++.
T Consensus 211 --------------~~~i~~~~~~~~l~ 224 (227)
T PRK08903 211 --------------KRPVTLPLLREMLA 224 (227)
T ss_pred --------------CCCCCHHHHHHHHh
Confidence 15799999988875
No 132
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=4.5e-12 Score=152.98 Aligned_cols=185 Identities=21% Similarity=0.232 Sum_probs=132.8
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 791 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~-------------- 791 (1018)
.+|+|++|.+.+++.|..++.. .+.+..+||+||+|+|||++|+++|+.+++.
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~-------------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg 79 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQ-------------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCG 79 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCC
Confidence 5799999999999999998743 1234568999999999999999999998641
Q ss_pred ---------------EEEEeccccchhhhhhHHHHHHHHHHHHHhc----CCeEEEecchhhhhhccCCCcchHHHHHHH
Q 001746 792 ---------------FISITGSTLTSKWFGDAEKLTKALFSFASKL----APVIIFVDEVDSLLGARGGAFEHEATRRMR 852 (1018)
Q Consensus 792 ---------------fi~Is~seL~s~~~ge~ek~I~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~e~~~~il 852 (1018)
++.++..+- .....++.+...+... ...|++|||+|.|... ..
T Consensus 80 ~C~~C~~i~~g~h~D~~eldaas~------~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~------------a~ 141 (618)
T PRK14951 80 VCQACRDIDSGRFVDYTELDAASN------RGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNT------------AF 141 (618)
T ss_pred ccHHHHHHHcCCCCceeecCcccc------cCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHH------------HH
Confidence 333333211 1122345555444321 2359999999998422 24
Q ss_pred HHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHcc
Q 001746 853 NEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATE 931 (1018)
Q Consensus 853 ~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~Te 931 (1018)
|.|+..++.. ...+.+|.+|+.+..+...+++|+ ..+.|..++.++...+++..+...++. ++..+..|+..+.
T Consensus 142 NaLLKtLEEP----P~~~~fIL~Ttd~~kil~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~ 216 (618)
T PRK14951 142 NAMLKTLEEP----PEYLKFVLATTDPQKVPVTVLSRC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAAR 216 (618)
T ss_pred HHHHHhcccC----CCCeEEEEEECCchhhhHHHHHhc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 5666666542 235666767778888888999998 788999999999999999998877664 3345788888888
Q ss_pred CCCHHHHHHHHHHHHH
Q 001746 932 GYSGSDLKNLCIAAAY 947 (1018)
Q Consensus 932 GfSgaDL~~L~~~Aa~ 947 (1018)
| +.+++.+++..+..
T Consensus 217 G-slR~al~lLdq~ia 231 (618)
T PRK14951 217 G-SMRDALSLTDQAIA 231 (618)
T ss_pred C-CHHHHHHHHHHHHH
Confidence 7 78888888765543
No 133
>PLN03025 replication factor C subunit; Provisional
Probab=99.42 E-value=7.2e-12 Score=140.84 Aligned_cols=183 Identities=20% Similarity=0.191 Sum_probs=122.7
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecccc
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAG-----ANFISITGSTL 800 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg-----~~fi~Is~seL 800 (1018)
.+|+|+.|.+++.+.|+.++.. . ...++|||||||||||++|+++|+++. ..++.++.++.
T Consensus 10 ~~l~~~~g~~~~~~~L~~~~~~----------~----~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~ 75 (319)
T PLN03025 10 TKLDDIVGNEDAVSRLQVIARD----------G----NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDD 75 (319)
T ss_pred CCHHHhcCcHHHHHHHHHHHhc----------C----CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccccc
Confidence 5799999999999999887632 1 113599999999999999999999972 24666666543
Q ss_pred chhhhhhHHHHHHHHHHHHH----hcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEec
Q 001746 801 TSKWFGDAEKLTKALFSFAS----KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGAT 876 (1018)
Q Consensus 801 ~s~~~ge~ek~I~~lF~~A~----k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTT 876 (1018)
.+. ......+. .|.... ...+.||+|||+|.+.... .+.|+..++.. .....+|.+|
T Consensus 76 ~~~--~~vr~~i~-~~~~~~~~~~~~~~kviiiDE~d~lt~~a------------q~aL~~~lE~~----~~~t~~il~~ 136 (319)
T PLN03025 76 RGI--DVVRNKIK-MFAQKKVTLPPGRHKIVILDEADSMTSGA------------QQALRRTMEIY----SNTTRFALAC 136 (319)
T ss_pred ccH--HHHHHHHH-HHHhccccCCCCCeEEEEEechhhcCHHH------------HHHHHHHHhcc----cCCceEEEEe
Confidence 221 11111222 121111 1235799999999984321 23344444322 1234466678
Q ss_pred CCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHccCCCHHHHHHHHH
Q 001746 877 NRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLKNLCI 943 (1018)
Q Consensus 877 N~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeGfSgaDL~~L~~ 943 (1018)
|.+..+.+++++|+ ..+.|+.|+.++...+++..+..+++. ++..+..++..+.| ..+.+.+.++
T Consensus 137 n~~~~i~~~L~SRc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g-DlR~aln~Lq 202 (319)
T PLN03025 137 NTSSKIIEPIQSRC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG-DMRQALNNLQ 202 (319)
T ss_pred CCccccchhHHHhh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 88888999999998 578999999999999999998877654 34457777776654 4455555444
No 134
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.41 E-value=5.6e-12 Score=142.46 Aligned_cols=185 Identities=20% Similarity=0.283 Sum_probs=130.6
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA--------------- 790 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~--------------- 790 (1018)
.+|++++|.+.+++.|.+.+.. .+.++.+||+||||+|||++|+++|+.+..
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~-------------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c 77 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKN-------------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESC 77 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 5799999999999999987733 123467999999999999999999998742
Q ss_pred ---------cEEEEeccccchhhhhhHHHHHHHHHHHHHhc----CCeEEEecchhhhhhccCCCcchHHHHHHHHHHHh
Q 001746 791 ---------NFISITGSTLTSKWFGDAEKLTKALFSFASKL----APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 857 (1018)
Q Consensus 791 ---------~fi~Is~seL~s~~~ge~ek~I~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~ 857 (1018)
.++.+++.. ......++.++..+... ...||+|||+|.+.. ...+.|+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~------------~~~~~Ll~ 139 (355)
T TIGR02397 78 KEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK------------SAFNALLK 139 (355)
T ss_pred HHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH------------HHHHHHHH
Confidence 233343321 11223455666665432 235999999998832 22456666
Q ss_pred hhccccccCCCcEEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHccCCCHH
Q 001746 858 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGS 936 (1018)
Q Consensus 858 ~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeGfSga 936 (1018)
.++.. ...+++|.+|+.+..+.+++++|+ ..+.++.|+.++...+++.++...++. ++..+..++..+.| +.+
T Consensus 140 ~le~~----~~~~~lIl~~~~~~~l~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-~~~ 213 (355)
T TIGR02397 140 TLEEP----PEHVVFILATTEPHKIPATILSRC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG-SLR 213 (355)
T ss_pred HHhCC----ccceeEEEEeCCHHHHHHHHHhhe-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-ChH
Confidence 66542 235666777788888889999998 578899999999999999998876653 33456677777765 666
Q ss_pred HHHHHHHHHHH
Q 001746 937 DLKNLCIAAAY 947 (1018)
Q Consensus 937 DL~~L~~~Aa~ 947 (1018)
.+.+.++.++.
T Consensus 214 ~a~~~lekl~~ 224 (355)
T TIGR02397 214 DALSLLDQLIS 224 (355)
T ss_pred HHHHHHHHHHh
Confidence 66666655543
No 135
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.41 E-value=6.3e-12 Score=139.30 Aligned_cols=208 Identities=23% Similarity=0.352 Sum_probs=135.4
Q ss_pred cccccccChHHHHH---HHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---EEEEeccc
Q 001746 726 VRFDDIGALEDVKK---ALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN---FISITGST 799 (1018)
Q Consensus 726 vtfdDIgGle~vk~---~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~---fi~Is~se 799 (1018)
.+++|..|++.+.. .|+.+|.+ ....+++||||||||||+||+.|+....-+ ||.+++..
T Consensus 135 ktL~dyvGQ~hlv~q~gllrs~ieq--------------~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~ 200 (554)
T KOG2028|consen 135 KTLDDYVGQSHLVGQDGLLRSLIEQ--------------NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN 200 (554)
T ss_pred chHHHhcchhhhcCcchHHHHHHHc--------------CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc
Confidence 35677777776543 34444432 223579999999999999999999988665 77776643
Q ss_pred cchhhhhhHHHHHHHHHHHHHhc-----CCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEE
Q 001746 800 LTSKWFGDAEKLTKALFSFASKL-----APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILG 874 (1018)
Q Consensus 800 L~s~~~ge~ek~I~~lF~~A~k~-----~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIa 874 (1018)
- .-+-++.+|+.+++. ...|||||||+++.... ...||-.+ ++..|++||
T Consensus 201 a-------~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQ------------QD~fLP~V------E~G~I~lIG 255 (554)
T KOG2028|consen 201 A-------KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQ------------QDTFLPHV------ENGDITLIG 255 (554)
T ss_pred c-------chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhh------------hhccccee------ccCceEEEe
Confidence 2 235577788877653 35899999999984322 12344332 455688888
Q ss_pred ec--CCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhcc--------CCC------CcccHHHHHHHccCCCHHHH
Q 001746 875 AT--NRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHE--------SLE------SGFQFNELANATEGYSGSDL 938 (1018)
Q Consensus 875 TT--N~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~--------~l~------~dvdl~~LA~~TeGfSgaDL 938 (1018)
+| |..+.|..+|++|+ +++.+.....+.-..||...+... ++. ++--++.++..++|-....|
T Consensus 256 ATTENPSFqln~aLlSRC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aL 334 (554)
T KOG2028|consen 256 ATTENPSFQLNAALLSRC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAAL 334 (554)
T ss_pred cccCCCccchhHHHHhcc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHH
Confidence 76 66788999999999 677788888899999988755411 111 12236778888887555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHHhhC
Q 001746 939 KNLCIAAAYRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQSKAKVG 985 (1018)
Q Consensus 939 ~~L~~~Aa~~Airr~~~~~~~~~~~~~~~~~rpLT~eDF~~Al~kv~ 985 (1018)
..| +.++.....| . + .....+|+.+|+.++++.-.
T Consensus 335 N~L-ems~~m~~tr------~-g----~~~~~~lSidDvke~lq~s~ 369 (554)
T KOG2028|consen 335 NAL-EMSLSMFCTR------S-G----QSSRVLLSIDDVKEGLQRSH 369 (554)
T ss_pred HHH-HHHHHHHHhh------c-C----CcccceecHHHHHHHHhhcc
Confidence 433 2221111111 0 1 11225799999999987654
No 136
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=1e-11 Score=149.41 Aligned_cols=189 Identities=17% Similarity=0.184 Sum_probs=131.1
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA--------------- 790 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~--------------- 790 (1018)
.+|+||.|.+.+++.|+.++.. .+.++.+||+||+|||||++|+++|+.+.+
T Consensus 10 ~~f~eivGq~~i~~~L~~~i~~-------------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 76 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSSALDA-------------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESC 76 (584)
T ss_pred CcHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHH
Confidence 5799999999999999998743 133456899999999999999999998753
Q ss_pred -----------cEEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhh
Q 001746 791 -----------NFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAW 859 (1018)
Q Consensus 791 -----------~fi~Is~seL~s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~L 859 (1018)
.++.++++... .+.+....+..+..........|++|||+|.|.. ...+.|+..|
T Consensus 77 ~~i~~~~~~~~dvieidaas~~--gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~------------~A~NALLK~L 142 (584)
T PRK14952 77 VALAPNGPGSIDVVELDAASHG--GVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT------------AGFNALLKIV 142 (584)
T ss_pred HHhhcccCCCceEEEecccccc--CHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH------------HHHHHHHHHH
Confidence 13334332211 1122222222222111122346999999999842 2356777777
Q ss_pred ccccccCCCcEEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHccCCCHHHH
Q 001746 860 DGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDL 938 (1018)
Q Consensus 860 dgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeGfSgaDL 938 (1018)
... ...+++|.+|+.+..+.+.+++|+ ..+.|..++.++..+++..++...++. ++..+..|+..+.| +.+++
T Consensus 143 EEp----p~~~~fIL~tte~~kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~G-dlR~a 216 (584)
T PRK14952 143 EEP----PEHLIFIFATTEPEKVLPTIRSRT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGG-SPRDT 216 (584)
T ss_pred hcC----CCCeEEEEEeCChHhhHHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 553 335777777788889999999997 678999999999999999998877653 33446667776665 77777
Q ss_pred HHHHHHHHH
Q 001746 939 KNLCIAAAY 947 (1018)
Q Consensus 939 ~~L~~~Aa~ 947 (1018)
.+++..++.
T Consensus 217 ln~Ldql~~ 225 (584)
T PRK14952 217 LSVLDQLLA 225 (584)
T ss_pred HHHHHHHHh
Confidence 777776543
No 137
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.39 E-value=1.3e-11 Score=149.78 Aligned_cols=217 Identities=17% Similarity=0.199 Sum_probs=141.1
Q ss_pred ccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecc
Q 001746 729 DDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA----------GANFISITGS 798 (1018)
Q Consensus 729 dDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~el----------g~~fi~Is~s 798 (1018)
+.|.+.++..++|..++...+.. ..+...++|+|+||||||++++.+..++ .+.+++|+|.
T Consensus 755 D~LPhREeEIeeLasfL~paIkg---------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm 825 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQ---------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM 825 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhc---------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC
Confidence 46889999999998887553321 1232345799999999999999998776 2667899986
Q ss_pred ccchhhh----------------h-hHHHHHHHHHHHHH--hcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhh
Q 001746 799 TLTSKWF----------------G-DAEKLTKALFSFAS--KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAW 859 (1018)
Q Consensus 799 eL~s~~~----------------g-e~ek~I~~lF~~A~--k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~L 859 (1018)
.+...+. + .....+..+|.... .....||+|||||.|.... ..++-.|+...
T Consensus 826 ~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~---------QDVLYnLFR~~ 896 (1164)
T PTZ00112 826 NVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT---------QKVLFTLFDWP 896 (1164)
T ss_pred ccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH---------HHHHHHHHHHh
Confidence 5422210 1 12345666776542 2335799999999996431 12233333321
Q ss_pred ccccccCCCcEEEEEecCC---CCCCcHHHHhccCc-cccccCCCHHHHHHHHHHHHhcc-CCCCcccHHHHHHHccCCC
Q 001746 860 DGLRSKESQKILILGATNR---PFDLDDAVIRRLPR-RIYVDLPDAENRMKILRIFLAHE-SLESGFQFNELANATEGYS 934 (1018)
Q Consensus 860 dgl~~~~~~~VlVIaTTN~---p~~LD~aLlrRFd~-~I~V~lPd~eeR~eILk~~L~~~-~l~~dvdl~~LA~~TeGfS 934 (1018)
. ....+++|||++|. +..|++.+.+||.. .|.|++++.+++.+||+..+... .+-++..++.+|+.+...
T Consensus 897 ---~-~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~- 971 (1164)
T PTZ00112 897 ---T-KINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANV- 971 (1164)
T ss_pred ---h-ccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhc-
Confidence 1 23457999999986 45677888888864 48899999999999999988753 222444467777755533
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHHhhCC
Q 001746 935 GSDLKNL---CIAAAYRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQSKAKVGP 986 (1018)
Q Consensus 935 gaDL~~L---~~~Aa~~Airr~~~~~~~~~~~~~~~~~rpLT~eDF~~Al~kv~P 986 (1018)
.+|++.+ |..|+.. .. ...|+.+|+.+|+.++..
T Consensus 972 SGDARKALDILRrAgEi--------ke----------gskVT~eHVrkAleeiE~ 1008 (1164)
T PTZ00112 972 SGDIRKALQICRKAFEN--------KR----------GQKIVPRDITEATNQLFD 1008 (1164)
T ss_pred CCHHHHHHHHHHHHHhh--------cC----------CCccCHHHHHHHHHHHHh
Confidence 3455543 3333321 00 125889999999887743
No 138
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.39 E-value=8.5e-12 Score=139.19 Aligned_cols=155 Identities=23% Similarity=0.286 Sum_probs=108.4
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhh
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWF 805 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~s~~~ 805 (1018)
.+|+|+.|.+.+++.+..++.. + ..+..+||+||||+|||++|++++++++.+++.+++.+ .. .
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~-----------~--~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~-~ 81 (316)
T PHA02544 18 STIDECILPAADKETFKSIVKK-----------G--RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR-I 81 (316)
T ss_pred CcHHHhcCcHHHHHHHHHHHhc-----------C--CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc-H
Confidence 5899999999999999988742 1 23355777999999999999999999999999998876 21 2
Q ss_pred hhHHHHHHHHHHHHH-hcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcH
Q 001746 806 GDAEKLTKALFSFAS-KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDD 884 (1018)
Q Consensus 806 ge~ek~I~~lF~~A~-k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~LD~ 884 (1018)
......+........ ...+.||+|||+|.+... . .. ..|...++.. ...+.+|.|||.+..+.+
T Consensus 82 ~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~-------~-~~---~~L~~~le~~----~~~~~~Ilt~n~~~~l~~ 146 (316)
T PHA02544 82 DFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA-------D-AQ---RHLRSFMEAY----SKNCSFIITANNKNGIIE 146 (316)
T ss_pred HHHHHHHHHHHHhhcccCCCeEEEEECcccccCH-------H-HH---HHHHHHHHhc----CCCceEEEEcCChhhchH
Confidence 222222222111111 125689999999987211 1 11 2233333332 234677889999999999
Q ss_pred HHHhccCccccccCCCHHHHHHHHHHHH
Q 001746 885 AVIRRLPRRIYVDLPDAENRMKILRIFL 912 (1018)
Q Consensus 885 aLlrRFd~~I~V~lPd~eeR~eILk~~L 912 (1018)
++++|| ..+.++.|+.+++..+++.++
T Consensus 147 ~l~sR~-~~i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 147 PLRSRC-RVIDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred HHHhhc-eEEEeCCCCHHHHHHHHHHHH
Confidence 999999 578899999999988876543
No 139
>PRK08727 hypothetical protein; Validated
Probab=99.38 E-value=1.9e-11 Score=131.74 Aligned_cols=180 Identities=21% Similarity=0.187 Sum_probs=112.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCC
Q 001746 765 KGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGG 841 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~ 841 (1018)
..++|+||+|||||+|++|+++++ +...++++..++.. .+..++... ....+|+|||++.+.....
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~l--~~~dlLiIDDi~~l~~~~~- 110 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG--------RLRDALEAL--EGRSLVALDGLESIAGQRE- 110 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh--------hHHHHHHHH--hcCCEEEEeCcccccCChH-
Confidence 459999999999999999998875 66667776544322 222333332 2457999999998864321
Q ss_pred CcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCC---cHHHHhcc--CccccccCCCHHHHHHHHHHHHhccC
Q 001746 842 AFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDL---DDAVIRRL--PRRIYVDLPDAENRMKILRIFLAHES 916 (1018)
Q Consensus 842 ~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~L---D~aLlrRF--d~~I~V~lPd~eeR~eILk~~L~~~~ 916 (1018)
. ...++..++.... ...-+|+++...|..+ .+.+++|| ...+.++.|+.+++.+|++..+...+
T Consensus 111 -----~----~~~lf~l~n~~~~--~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~ 179 (233)
T PRK08727 111 -----D----EVALFDFHNRARA--AGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRG 179 (233)
T ss_pred -----H----HHHHHHHHHHHHH--cCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcC
Confidence 1 1122333333321 1223444444566654 68999997 45678899999999999998776544
Q ss_pred CC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHHh
Q 001746 917 LE-SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQSKAK 983 (1018)
Q Consensus 917 l~-~dvdl~~LA~~TeGfSgaDL~~L~~~Aa~~Airr~~~~~~~~~~~~~~~~~rpLT~eDF~~Al~k 983 (1018)
+. ++..+..|+..+.| ..+.+.++++.....+... .++||.+.+.+.+..
T Consensus 180 l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~~~~~~~----------------~~~it~~~~~~~l~~ 230 (233)
T PRK08727 180 LALDEAAIDWLLTHGER-ELAGLVALLDRLDRESLAA----------------KRRVTVPFLRRVLEE 230 (233)
T ss_pred CCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHh----------------CCCCCHHHHHHHHhh
Confidence 43 34457778887764 4444444454333222211 146888888887754
No 140
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.38 E-value=9.6e-12 Score=154.59 Aligned_cols=187 Identities=20% Similarity=0.159 Sum_probs=129.7
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 791 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~-------------- 791 (1018)
.+|++|+|.+.+++.|+..+.. .+.++.+||+||+|||||++|++||+.+.+.
T Consensus 12 ~~f~eiiGqe~v~~~L~~~i~~-------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC 78 (824)
T PRK07764 12 ATFAEVIGQEHVTEPLSTALDS-------------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSC 78 (824)
T ss_pred CCHHHhcCcHHHHHHHHHHHHh-------------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHH
Confidence 5799999999999999988743 1234569999999999999999999998641
Q ss_pred ------------EEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhh
Q 001746 792 ------------FISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAW 859 (1018)
Q Consensus 792 ------------fi~Is~seL~s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~L 859 (1018)
|+.++..... .+.+....+..++.........|+||||+|.|.. ...|.|+..|
T Consensus 79 ~~~~~g~~~~~dv~eidaas~~--~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~------------~a~NaLLK~L 144 (824)
T PRK07764 79 VALAPGGPGSLDVTEIDAASHG--GVDDARELRERAFFAPAESRYKIFIIDEAHMVTP------------QGFNALLKIV 144 (824)
T ss_pred HHHHcCCCCCCcEEEecccccC--CHHHHHHHHHHHHhchhcCCceEEEEechhhcCH------------HHHHHHHHHH
Confidence 3334332211 1222333333333222334557999999999842 2356777777
Q ss_pred ccccccCCCcEEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHccCCCHHHH
Q 001746 860 DGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDL 938 (1018)
Q Consensus 860 dgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeGfSgaDL 938 (1018)
+.. ...+++|.+|+.++.|.+.|++|+ ..+.|..++.++..++|+.++..+++. ++..+..|+..+.| +.+++
T Consensus 145 EEp----P~~~~fIl~tt~~~kLl~TIrSRc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG-dlR~A 218 (824)
T PRK07764 145 EEP----PEHLKFIFATTEPDKVIGTIRSRT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG-SVRDS 218 (824)
T ss_pred hCC----CCCeEEEEEeCChhhhhHHHHhhe-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 654 235667777788888999999998 678999999999999999998877664 33345666666665 55666
Q ss_pred HHHHHHH
Q 001746 939 KNLCIAA 945 (1018)
Q Consensus 939 ~~L~~~A 945 (1018)
.++++..
T Consensus 219 l~eLEKL 225 (824)
T PRK07764 219 LSVLDQL 225 (824)
T ss_pred HHHHHHH
Confidence 5555543
No 141
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.38 E-value=8e-12 Score=155.09 Aligned_cols=226 Identities=15% Similarity=0.228 Sum_probs=149.4
Q ss_pred cccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch-------
Q 001746 730 DIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS------- 802 (1018)
Q Consensus 730 DIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~s------- 802 (1018)
+..|++++|+.+.+++....... ......++|+||||+|||++++.+|..++.+|+.+++.....
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~--------~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVN--------KIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH 394 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcc--------cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc
Confidence 58999999999998886532211 112245999999999999999999999999999888665421
Q ss_pred --hhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhcccc-----------ccCCCc
Q 001746 803 --KWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR-----------SKESQK 869 (1018)
Q Consensus 803 --~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~-----------~~~~~~ 869 (1018)
.|.|.....+.+.+..+.... .||+|||||.+....++. ....|+..++.-. ..+-.+
T Consensus 395 ~~~~~g~~~G~~~~~l~~~~~~~-~villDEidk~~~~~~g~--------~~~aLlevld~~~~~~~~d~~~~~~~dls~ 465 (784)
T PRK10787 395 RRTYIGSMPGKLIQKMAKVGVKN-PLFLLDEIDKMSSDMRGD--------PASALLEVLDPEQNVAFSDHYLEVDYDLSD 465 (784)
T ss_pred hhccCCCCCcHHHHHHHhcCCCC-CEEEEEChhhcccccCCC--------HHHHHHHHhccccEEEEecccccccccCCc
Confidence 244444445555555554333 489999999997543221 1235555554210 112357
Q ss_pred EEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhc-----cCCC------CcccHHHHHHH-ccCCCHHH
Q 001746 870 ILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAH-----ESLE------SGFQFNELANA-TEGYSGSD 937 (1018)
Q Consensus 870 VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~-----~~l~------~dvdl~~LA~~-TeGfSgaD 937 (1018)
+++|+|+|.. .++++|++|| ..|.+..++.++..+|.+.++.. ..+. ++.-+..|+.. +..+-.+.
T Consensus 466 v~~i~TaN~~-~i~~aLl~R~-~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~ 543 (784)
T PRK10787 466 VMFVATSNSM-NIPAPLLDRM-EVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRS 543 (784)
T ss_pred eEEEEcCCCC-CCCHHHhcce-eeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcH
Confidence 9999999887 5999999999 57889999999999999988842 1111 12224444432 23344578
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHH
Q 001746 938 LKNLCIAAAYRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQSKA 982 (1018)
Q Consensus 938 L~~L~~~Aa~~Airr~~~~~~~~~~~~~~~~~rpLT~eDF~~Al~ 982 (1018)
|+.++...+..++.+.+.... .....|+.+++.+.+.
T Consensus 544 LeR~I~~i~r~~l~~~~~~~~--------~~~v~v~~~~~~~~lg 580 (784)
T PRK10787 544 LEREISKLCRKAVKQLLLDKS--------LKHIEINGDNLHDYLG 580 (784)
T ss_pred HHHHHHHHHHHHHHHHHhcCC--------CceeeecHHHHHHHhC
Confidence 888887776666665432211 1113578888877765
No 142
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=3.6e-12 Score=150.63 Aligned_cols=166 Identities=23% Similarity=0.321 Sum_probs=122.2
Q ss_pred cccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc--------
Q 001746 730 DIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT-------- 801 (1018)
Q Consensus 730 DIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~-------- 801 (1018)
|--|++++|+.+.|++.--.-+. ....+-+.|+||||+|||++++.||..+|..|+.++..-+.
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrg--------s~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRG--------SVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcc--------cCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 67899999999999985421111 12335588999999999999999999999999998865442
Q ss_pred -hhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhcccc-----------ccCCCc
Q 001746 802 -SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR-----------SKESQK 869 (1018)
Q Consensus 802 -s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~-----------~~~~~~ 869 (1018)
..|+|.+...+.+......... .+++|||||.+...-++ ++. .+||..||--. +-+-.+
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~N-PliLiDEvDKlG~g~qG--DPa------sALLElLDPEQNanFlDHYLdVp~DLSk 554 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTEN-PLILIDEVDKLGSGHQG--DPA------SALLELLDPEQNANFLDHYLDVPVDLSK 554 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCC-ceEEeehhhhhCCCCCC--ChH------HHHHHhcChhhccchhhhccccccchhh
Confidence 2367777666666666665544 47789999999732222 221 23443333110 113358
Q ss_pred EEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHh
Q 001746 870 ILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLA 913 (1018)
Q Consensus 870 VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~ 913 (1018)
|++|||+|..+.++++|+.|+ ..|.++-+..++..+|.+.|+-
T Consensus 555 VLFicTAN~idtIP~pLlDRM-EvIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 555 VLFICTANVIDTIPPPLLDRM-EVIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred eEEEEeccccccCChhhhhhh-heeeccCccHHHHHHHHHHhhh
Confidence 999999999999999999999 6789999999999999998874
No 143
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.37 E-value=1.7e-11 Score=131.20 Aligned_cols=197 Identities=22% Similarity=0.304 Sum_probs=119.8
Q ss_pred CCccccccc-C--hHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEE
Q 001746 724 IGVRFDDIG-A--LEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA-----GANFISI 795 (1018)
Q Consensus 724 ~~vtfdDIg-G--le~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~el-----g~~fi~I 795 (1018)
++-||+..+ | .+.....+..+...+ + ....+++||||+|+|||+|.+|+++++ +..++++
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia~~~----------~--~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~ 70 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIAENP----------G--ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYL 70 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHHHST----------T--TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEE
T ss_pred CCCccccCCcCCcHHHHHHHHHHHHhcC----------C--CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceee
Confidence 346788763 3 333444444443321 1 122459999999999999999999875 6778999
Q ss_pred eccccchhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEe
Q 001746 796 TGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGA 875 (1018)
Q Consensus 796 s~seL~s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaT 875 (1018)
++.++...+.......-..-|..... ...+|+|||++.+.++. ....+|...++.+.. ..+.+||++
T Consensus 71 ~~~~f~~~~~~~~~~~~~~~~~~~~~-~~DlL~iDDi~~l~~~~----------~~q~~lf~l~n~~~~--~~k~li~ts 137 (219)
T PF00308_consen 71 SAEEFIREFADALRDGEIEEFKDRLR-SADLLIIDDIQFLAGKQ----------RTQEELFHLFNRLIE--SGKQLILTS 137 (219)
T ss_dssp EHHHHHHHHHHHHHTTSHHHHHHHHC-TSSEEEEETGGGGTTHH----------HHHHHHHHHHHHHHH--TTSEEEEEE
T ss_pred cHHHHHHHHHHHHHcccchhhhhhhh-cCCEEEEecchhhcCch----------HHHHHHHHHHHHHHh--hCCeEEEEe
Confidence 98887665544332211122322222 56899999999985431 223444444444432 234566666
Q ss_pred cCCCCC---CcHHHHhccCc--cccccCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHccCCCHHHHHHHHHHHH
Q 001746 876 TNRPFD---LDDAVIRRLPR--RIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLKNLCIAAA 946 (1018)
Q Consensus 876 TN~p~~---LD~aLlrRFd~--~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeGfSgaDL~~L~~~Aa 946 (1018)
...|.. +++.+.+||.. .+.+..|+.+.|.+|++..+...++. ++.-++.|+....+ +.++|..++..-.
T Consensus 138 ~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~l~ 213 (219)
T PF00308_consen 138 DRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRR-DVRELEGALNRLD 213 (219)
T ss_dssp SS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTS-SHHHHHHHHHHHH
T ss_pred CCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcC-CHHHHHHHHHHHH
Confidence 666655 56789999865 56678899999999999999877765 33346667777654 7788887776543
No 144
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.37 E-value=1.5e-11 Score=132.49 Aligned_cols=189 Identities=25% Similarity=0.375 Sum_probs=134.3
Q ss_pred CcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc
Q 001746 725 GVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLT 801 (1018)
Q Consensus 725 ~vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~ 801 (1018)
.+.++++.|++.+++.|.+-... |-.+ .|..++||||++|||||++++|+.++. |..+|.+...++.
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~-------Fl~G---~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~ 92 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQ-------FLQG---LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLG 92 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHH-------HHcC---CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhc
Confidence 47899999999999999876644 4333 367899999999999999999999987 7788888765543
Q ss_pred hhhhhhHHHHHHHHHHHHH-hcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCC
Q 001746 802 SKWFGDAEKLTKALFSFAS-KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPF 880 (1018)
Q Consensus 802 s~~~ge~ek~I~~lF~~A~-k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~ 880 (1018)
. +..++...+ +...-|||+||+- + ... ..-...|...|+|--...+.+|+|.||+|+..
T Consensus 93 ~---------l~~l~~~l~~~~~kFIlf~DDLs-F-e~~---------d~~yk~LKs~LeGgle~~P~NvliyATSNRRH 152 (249)
T PF05673_consen 93 D---------LPELLDLLRDRPYKFILFCDDLS-F-EEG---------DTEYKALKSVLEGGLEARPDNVLIYATSNRRH 152 (249)
T ss_pred c---------HHHHHHHHhcCCCCEEEEecCCC-C-CCC---------cHHHHHHHHHhcCccccCCCcEEEEEecchhh
Confidence 2 334444443 2345799999863 1 111 11135677778876656667899999999654
Q ss_pred CCcH-----------------------HHHhccCccccccCCCHHHHHHHHHHHHhccCCCCc-ccHH----HHHHHccC
Q 001746 881 DLDD-----------------------AVIRRLPRRIYVDLPDAENRMKILRIFLAHESLESG-FQFN----ELANATEG 932 (1018)
Q Consensus 881 ~LD~-----------------------aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~~d-vdl~----~LA~~TeG 932 (1018)
.+++ +|-.||...|.|..|+.++..+|++.++...++.-+ ..+. ..|..-.|
T Consensus 153 Lv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~ 232 (249)
T PF05673_consen 153 LVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGG 232 (249)
T ss_pred ccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCC
Confidence 3221 444599999999999999999999999987776533 2222 23444457
Q ss_pred CCHHHHHHHHH
Q 001746 933 YSGSDLKNLCI 943 (1018)
Q Consensus 933 fSgaDL~~L~~ 943 (1018)
.||+--.+.|.
T Consensus 233 RSGRtA~QF~~ 243 (249)
T PF05673_consen 233 RSGRTARQFID 243 (249)
T ss_pred CCHHHHHHHHH
Confidence 78876555543
No 145
>PRK05642 DNA replication initiation factor; Validated
Probab=99.37 E-value=2.4e-11 Score=131.19 Aligned_cols=179 Identities=18% Similarity=0.218 Sum_probs=117.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCC
Q 001746 765 KGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGG 841 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~ 841 (1018)
.+++||||+|+|||+|++|+++++ +..+++++..++.... ..+..... ...+|+|||++.+.+...
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~--~~d~LiiDDi~~~~~~~~- 114 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLE--QYELVCLDDLDVIAGKAD- 114 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhh--hCCEEEEechhhhcCChH-
Confidence 569999999999999999999875 6778888887765421 12222222 236899999998854321
Q ss_pred CcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCC---CcHHHHhccC--ccccccCCCHHHHHHHHHHHHhccC
Q 001746 842 AFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFD---LDDAVIRRLP--RRIYVDLPDAENRMKILRIFLAHES 916 (1018)
Q Consensus 842 ~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~---LD~aLlrRFd--~~I~V~lPd~eeR~eILk~~L~~~~ 916 (1018)
...+|...++.+. +..+.+||+++..|.. +.+.+++||. ..+.+..|+.++|.++++..+...+
T Consensus 115 ---------~~~~Lf~l~n~~~--~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~ 183 (234)
T PRK05642 115 ---------WEEALFHLFNRLR--DSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRG 183 (234)
T ss_pred ---------HHHHHHHHHHHHH--hcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC
Confidence 1123444444432 2345677777766644 3689999985 4556788999999999996665544
Q ss_pred CC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHH
Q 001746 917 LE-SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQSKA 982 (1018)
Q Consensus 917 l~-~dvdl~~LA~~TeGfSgaDL~~L~~~Aa~~Airr~~~~~~~~~~~~~~~~~rpLT~eDF~~Al~ 982 (1018)
+. ++..++.|+....+ +.+.+..+++.-...++.. .++||+.-+++++.
T Consensus 184 ~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~l~~----------------~~~it~~~~~~~L~ 233 (234)
T PRK05642 184 LHLTDEVGHFILTRGTR-SMSALFDLLERLDQASLQA----------------QRKLTIPFLKETLG 233 (234)
T ss_pred CCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHc----------------CCcCCHHHHHHHhc
Confidence 42 34457778887775 7777777766443222211 15688887777653
No 146
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=1.6e-11 Score=148.36 Aligned_cols=184 Identities=21% Similarity=0.233 Sum_probs=133.1
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 791 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~-------------- 791 (1018)
.+|+||+|.+.+++.|...+.. .+.++.+|||||+|+|||++|+++|+.+.+.
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~-------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c 79 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDT-------------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPC 79 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHH
Confidence 5799999999999999988743 1345678999999999999999999998532
Q ss_pred ----------EEEEeccccchhhhhhHHHHHHHHHHHHHhc----CCeEEEecchhhhhhccCCCcchHHHHHHHHHHHh
Q 001746 792 ----------FISITGSTLTSKWFGDAEKLTKALFSFASKL----APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 857 (1018)
Q Consensus 792 ----------fi~Is~seL~s~~~ge~ek~I~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~ 857 (1018)
++.+++..- .....++.+...+... ...|++|||+|.|.. ...+.|+.
T Consensus 80 ~~i~~g~~~d~~eid~~s~------~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~------------~a~naLLk 141 (576)
T PRK14965 80 VEITEGRSVDVFEIDGASN------TGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST------------NAFNALLK 141 (576)
T ss_pred HHHhcCCCCCeeeeeccCc------cCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH------------HHHHHHHH
Confidence 344443321 1123345555444321 235999999998842 22467777
Q ss_pred hhccccccCCCcEEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHccCCCHH
Q 001746 858 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGS 936 (1018)
Q Consensus 858 ~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeGfSga 936 (1018)
.|+.. ...+++|.+|+.++.|.+.+++|+ ..+.|..++.++....+..++...++. ++..+..|+..+.| +.+
T Consensus 142 ~LEep----p~~~~fIl~t~~~~kl~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G-~lr 215 (576)
T PRK14965 142 TLEEP----PPHVKFIFATTEPHKVPITILSRC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG-SMR 215 (576)
T ss_pred HHHcC----CCCeEEEEEeCChhhhhHHHHHhh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHH
Confidence 77553 235777777888899999999998 578899999999999999988877654 44557778888876 667
Q ss_pred HHHHHHHHHH
Q 001746 937 DLKNLCIAAA 946 (1018)
Q Consensus 937 DL~~L~~~Aa 946 (1018)
++.+++..+.
T Consensus 216 ~al~~Ldqli 225 (576)
T PRK14965 216 DSLSTLDQVL 225 (576)
T ss_pred HHHHHHHHHH
Confidence 7777765543
No 147
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.36 E-value=1.4e-11 Score=151.44 Aligned_cols=180 Identities=23% Similarity=0.335 Sum_probs=121.9
Q ss_pred cccccccChHHHHH---HHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch
Q 001746 726 VRFDDIGALEDVKK---ALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS 802 (1018)
Q Consensus 726 vtfdDIgGle~vk~---~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~s 802 (1018)
.+|+|+.|.+.+.. .|+.++.. ....++|||||||||||++|+++|+.++.+|+.+++....
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~--------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~- 89 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKA--------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAG- 89 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhc--------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhh-
Confidence 57899999998875 45555422 1224699999999999999999999999999888765311
Q ss_pred hhhhhHHHHHHHHHHHHH-----hcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEec-
Q 001746 803 KWFGDAEKLTKALFSFAS-----KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGAT- 876 (1018)
Q Consensus 803 ~~~ge~ek~I~~lF~~A~-----k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTT- 876 (1018)
.+.++..+..+. .....||||||||.+... ..+.|+..+. ...+++|++|
T Consensus 90 ------i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~------------qQdaLL~~lE------~g~IiLI~aTT 145 (725)
T PRK13341 90 ------VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKA------------QQDALLPWVE------NGTITLIGATT 145 (725)
T ss_pred ------hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHH------------HHHHHHHHhc------CceEEEEEecC
Confidence 112222332221 124579999999998422 1223443332 2356666655
Q ss_pred -CCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhc-------cCCC-CcccHHHHHHHccCCCHHHHHHHHHHHH
Q 001746 877 -NRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAH-------ESLE-SGFQFNELANATEGYSGSDLKNLCIAAA 946 (1018)
Q Consensus 877 -N~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~-------~~l~-~dvdl~~LA~~TeGfSgaDL~~L~~~Aa 946 (1018)
|....+++++++|+ ..+.++.++.+++..+++.++.. ..+. ++..+..|+..+.| ..+.+.++++.|+
T Consensus 146 enp~~~l~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~a~ 222 (725)
T PRK13341 146 ENPYFEVNKALVSRS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALELAV 222 (725)
T ss_pred CChHhhhhhHhhccc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 33356899999997 57889999999999999998872 2222 33346778877754 6677777777665
No 148
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.36 E-value=2.1e-11 Score=148.54 Aligned_cols=184 Identities=20% Similarity=0.297 Sum_probs=132.4
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE-------------
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANF------------- 792 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~f------------- 792 (1018)
.+|++|+|.+.+++.|+..+.. -+.++.+||+||+|+|||++|+++|+.+.+.-
T Consensus 15 ~~f~dIiGQe~~v~~L~~aI~~-------------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~ 81 (725)
T PRK07133 15 KTFDDIVGQDHIVQTLKNIIKS-------------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIE 81 (725)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHH
Confidence 5799999999999999988743 13346789999999999999999999885421
Q ss_pred --------EEEeccccchhhhhhHHHHHHHHHHHHHhc----CCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhc
Q 001746 793 --------ISITGSTLTSKWFGDAEKLTKALFSFASKL----APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWD 860 (1018)
Q Consensus 793 --------i~Is~seL~s~~~ge~ek~I~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ld 860 (1018)
+.+++.. ......++.+...+... ...|++|||+|.|.. ...+.|+..|+
T Consensus 82 ~~~~~~Dvieidaas------n~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~------------~A~NALLKtLE 143 (725)
T PRK07133 82 NVNNSLDIIEMDAAS------NNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK------------SAFNALLKTLE 143 (725)
T ss_pred hhcCCCcEEEEeccc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH------------HHHHHHHHHhh
Confidence 1111100 01133456666555432 346999999998842 23567777776
Q ss_pred cccccCCCcEEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHccCCCHHHHH
Q 001746 861 GLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLK 939 (1018)
Q Consensus 861 gl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeGfSgaDL~ 939 (1018)
.. ...+++|.+|+.++.|.+.+++|+ ..+.|..|+.++...+++..+...++. .+..+..+|..+.| +.+++.
T Consensus 144 EP----P~~tifILaTte~~KLl~TI~SRc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~Al 217 (725)
T PRK07133 144 EP----PKHVIFILATTEVHKIPLTILSRV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRDAL 217 (725)
T ss_pred cC----CCceEEEEEcCChhhhhHHHHhhc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 53 235677777788899999999999 578999999999999999888776654 23347778888876 667777
Q ss_pred HHHHHHH
Q 001746 940 NLCIAAA 946 (1018)
Q Consensus 940 ~L~~~Aa 946 (1018)
.++..++
T Consensus 218 slLekl~ 224 (725)
T PRK07133 218 SIAEQVS 224 (725)
T ss_pred HHHHHHH
Confidence 7766543
No 149
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.36 E-value=2.1e-11 Score=146.01 Aligned_cols=183 Identities=17% Similarity=0.236 Sum_probs=130.0
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA--------------- 790 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~--------------- 790 (1018)
.+|+++.|.+.+++.|...+.. .+.++++||+||+|+|||++|+++|+.+.+
T Consensus 13 ~~F~dIIGQe~iv~~L~~aI~~-------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sC 79 (605)
T PRK05896 13 HNFKQIIGQELIKKILVNAILN-------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVC 79 (605)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 5799999999999999887733 133477999999999999999999998743
Q ss_pred ---------cEEEEeccccchhhhhhHHHHHHHHHHHHHhc----CCeEEEecchhhhhhccCCCcchHHHHHHHHHHHh
Q 001746 791 ---------NFISITGSTLTSKWFGDAEKLTKALFSFASKL----APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 857 (1018)
Q Consensus 791 ---------~fi~Is~seL~s~~~ge~ek~I~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~ 857 (1018)
.++.+++... ..-..++.+...+... ...|++|||+|.|.. ...+.|+.
T Consensus 80 r~i~~~~h~DiieIdaas~------igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~------------~A~NaLLK 141 (605)
T PRK05896 80 ESINTNQSVDIVELDAASN------NGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST------------SAWNALLK 141 (605)
T ss_pred HHHHcCCCCceEEeccccc------cCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH------------HHHHHHHH
Confidence 2333433221 1122345554444332 235999999998832 12456776
Q ss_pred hhccccccCCCcEEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHccCCCHH
Q 001746 858 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGS 936 (1018)
Q Consensus 858 ~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeGfSga 936 (1018)
.|+.. ...+++|.+|+.+..+.+++++|+ ..+.|..|+.++...+++..+...++. ++..+..++.++.| +.+
T Consensus 142 tLEEP----p~~tvfIL~Tt~~~KLl~TI~SRc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G-dlR 215 (605)
T PRK05896 142 TLEEP----PKHVVFIFATTEFQKIPLTIISRC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG-SLR 215 (605)
T ss_pred HHHhC----CCcEEEEEECCChHhhhHHHHhhh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHH
Confidence 66543 235667777778899999999999 578999999999999999988776642 34457778888876 666
Q ss_pred HHHHHHHHH
Q 001746 937 DLKNLCIAA 945 (1018)
Q Consensus 937 DL~~L~~~A 945 (1018)
++.+++..+
T Consensus 216 ~AlnlLekL 224 (605)
T PRK05896 216 DGLSILDQL 224 (605)
T ss_pred HHHHHHHHH
Confidence 666666653
No 150
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.36 E-value=1.4e-11 Score=142.54 Aligned_cols=223 Identities=23% Similarity=0.320 Sum_probs=144.2
Q ss_pred ccChHHHHHHHHHHHHcccCCchhh----ccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch-hhh
Q 001746 731 IGALEDVKKALNELVILPMRRPDLF----SRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS-KWF 805 (1018)
Q Consensus 731 IgGle~vk~~L~e~V~~pL~~~elf----~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~s-~~~ 805 (1018)
|+|+++.++.+...+.....+.... ...+......+|||+||||||||++|+++|..++.+|..+++..+.. .|.
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyv 158 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYV 158 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccc
Confidence 6899999999988775433332110 00011122467999999999999999999999999999999887753 466
Q ss_pred hhH-HHHHHHHHHHH----HhcCCeEEEecchhhhhhccCCCc-chH-HHHHHHHHHHhhhccccc---------cCCCc
Q 001746 806 GDA-EKLTKALFSFA----SKLAPVIIFVDEVDSLLGARGGAF-EHE-ATRRMRNEFMSAWDGLRS---------KESQK 869 (1018)
Q Consensus 806 ge~-ek~I~~lF~~A----~k~~PsIIfIDEID~L~~~r~~~~-~~e-~~~~il~~LL~~Ldgl~~---------~~~~~ 869 (1018)
|.. +..+..++..+ ....++||||||||.+...+.+.. ... ....+.+.||..|+|... .+...
T Consensus 159 G~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~ 238 (413)
T TIGR00382 159 GEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQE 238 (413)
T ss_pred cccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCCC
Confidence 653 44455544422 344678999999999986543221 111 112467778888876431 12235
Q ss_pred EEEEEecCCCC--------------------------------------------------CCcHHHHhccCccccccCC
Q 001746 870 ILILGATNRPF--------------------------------------------------DLDDAVIRRLPRRIYVDLP 899 (1018)
Q Consensus 870 VlVIaTTN~p~--------------------------------------------------~LD~aLlrRFd~~I~V~lP 899 (1018)
.++|.|+|-.+ -+.|+++.|++.++.|...
T Consensus 239 ~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~pL 318 (413)
T TIGR00382 239 FIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLEKL 318 (413)
T ss_pred eEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecCCC
Confidence 67777777510 0346677789988899999
Q ss_pred CHHHHHHHHHHH----Hhc-------cCCC---CcccHHHHHHHc--cCCCHHHHHHHHHHHHHHHHHHH
Q 001746 900 DAENRMKILRIF----LAH-------ESLE---SGFQFNELANAT--EGYSGSDLKNLCIAAAYRPVQEL 953 (1018)
Q Consensus 900 d~eeR~eILk~~----L~~-------~~l~---~dvdl~~LA~~T--eGfSgaDL~~L~~~Aa~~Airr~ 953 (1018)
+.++..+|+... +++ .++. ++..++.||+.. ..+-.+-|+.+++.....++-++
T Consensus 319 ~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e~ 388 (413)
T TIGR00382 319 DEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFDL 388 (413)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhhC
Confidence 999999988752 221 1221 233366677653 35667788888877776665554
No 151
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.35 E-value=2.6e-11 Score=145.70 Aligned_cols=184 Identities=18% Similarity=0.199 Sum_probs=131.0
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 791 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~-------------- 791 (1018)
.+|+||+|.+.+++.|+..+.. .+.++.+|||||+|+|||++|+++|+.+.+.
T Consensus 13 ~~f~diiGqe~iv~~L~~~i~~-------------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C 79 (563)
T PRK06647 13 RDFNSLEGQDFVVETLKHSIES-------------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSC 79 (563)
T ss_pred CCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHH
Confidence 5799999999999999988743 1234679999999999999999999998542
Q ss_pred ----------EEEEeccccchhhhhhHHHHHHHHHHHHH----hcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHh
Q 001746 792 ----------FISITGSTLTSKWFGDAEKLTKALFSFAS----KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 857 (1018)
Q Consensus 792 ----------fi~Is~seL~s~~~ge~ek~I~~lF~~A~----k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~ 857 (1018)
++.+++.. ...-..++.+...+. .....|++|||+|.|.. ...+.|+.
T Consensus 80 ~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~------------~a~naLLK 141 (563)
T PRK06647 80 KSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN------------SAFNALLK 141 (563)
T ss_pred HHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH------------HHHHHHHH
Confidence 33333221 011223344443332 23456999999998832 23566777
Q ss_pred hhccccccCCCcEEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHccCCCHH
Q 001746 858 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGS 936 (1018)
Q Consensus 858 ~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeGfSga 936 (1018)
.++.. ...+++|.+|+.+..+.+++++|+ ..+.|..|+.++...+++..+...++. ++..+..|+..+.| +.+
T Consensus 142 ~LEep----p~~~vfI~~tte~~kL~~tI~SRc-~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dlR 215 (563)
T PRK06647 142 TIEEP----PPYIVFIFATTEVHKLPATIKSRC-QHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SVR 215 (563)
T ss_pred hhccC----CCCEEEEEecCChHHhHHHHHHhc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 66542 335677777777888999999998 468899999999999999988766654 34457778888776 777
Q ss_pred HHHHHHHHHH
Q 001746 937 DLKNLCIAAA 946 (1018)
Q Consensus 937 DL~~L~~~Aa 946 (1018)
++.+++..++
T Consensus 216 ~alslLdkli 225 (563)
T PRK06647 216 DAYTLFDQVV 225 (563)
T ss_pred HHHHHHHHHH
Confidence 7777776554
No 152
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=2.7e-11 Score=143.41 Aligned_cols=184 Identities=23% Similarity=0.257 Sum_probs=126.8
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 791 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~-------------- 791 (1018)
.+|+|+.|.+.+.+.|+..+.. .+.++.+|||||+|+|||++|+.+|+.+.+.
T Consensus 13 ~~f~diiGq~~i~~~L~~~i~~-------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc 79 (486)
T PRK14953 13 KFFKEVIGQEIVVRILKNAVKL-------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENC 79 (486)
T ss_pred CcHHHccChHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHH
Confidence 5799999999999999988733 1234568999999999999999999987531
Q ss_pred ----------EEEEeccccchhhhhhHHHHHHHHHHHHHh----cCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHh
Q 001746 792 ----------FISITGSTLTSKWFGDAEKLTKALFSFASK----LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 857 (1018)
Q Consensus 792 ----------fi~Is~seL~s~~~ge~ek~I~~lF~~A~k----~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~ 857 (1018)
++.++++.- .....++.+...+.. ....|++|||+|.+.. ...+.|+.
T Consensus 80 ~~i~~g~~~d~~eidaas~------~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~------------~a~naLLk 141 (486)
T PRK14953 80 VEIDKGSFPDLIEIDAASN------RGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK------------EAFNALLK 141 (486)
T ss_pred HHHhcCCCCcEEEEeCccC------CCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH------------HHHHHHHH
Confidence 222222110 112223444444332 2346999999998732 22456666
Q ss_pred hhccccccCCCcEEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHccCCCHH
Q 001746 858 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGS 936 (1018)
Q Consensus 858 ~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeGfSga 936 (1018)
.+... +. .+++|.+|+.++.+.+++.+|+ ..+.+..|+.++...+++.++...++. ++..+..|+..+.| +.+
T Consensus 142 ~LEep---p~-~~v~Il~tt~~~kl~~tI~SRc-~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~lr 215 (486)
T PRK14953 142 TLEEP---PP-RTIFILCTTEYDKIPPTILSRC-QRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-GMR 215 (486)
T ss_pred HHhcC---CC-CeEEEEEECCHHHHHHHHHHhc-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 66543 22 3455555667788888999998 478899999999999999999877654 33446778877775 667
Q ss_pred HHHHHHHHHH
Q 001746 937 DLKNLCIAAA 946 (1018)
Q Consensus 937 DL~~L~~~Aa 946 (1018)
++.+++..++
T Consensus 216 ~al~~Ldkl~ 225 (486)
T PRK14953 216 DAASLLDQAS 225 (486)
T ss_pred HHHHHHHHHH
Confidence 7777776654
No 153
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=3.6e-11 Score=137.37 Aligned_cols=184 Identities=17% Similarity=0.220 Sum_probs=128.2
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------E--E
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN----------F--I 793 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~----------f--i 793 (1018)
.+|+|++|.+.+++.+...+.. .+.++++|||||||+|||++|+++|+.+..+ + +
T Consensus 14 ~~~~~iig~~~~~~~l~~~i~~-------------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~ 80 (367)
T PRK14970 14 QTFDDVVGQSHITNTLLNAIEN-------------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIF 80 (367)
T ss_pred CcHHhcCCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceE
Confidence 5799999999999999888743 1234679999999999999999999988542 1 2
Q ss_pred EEeccccchhhhhhHHHHHHHHHHHHHhc----CCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCc
Q 001746 794 SITGSTLTSKWFGDAEKLTKALFSFASKL----APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQK 869 (1018)
Q Consensus 794 ~Is~seL~s~~~ge~ek~I~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~ 869 (1018)
.++... ......++.++..+... ...||+|||+|.+.. ...+.|+..++.. ...
T Consensus 81 ~l~~~~------~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~------------~~~~~ll~~le~~----~~~ 138 (367)
T PRK14970 81 ELDAAS------NNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS------------AAFNAFLKTLEEP----PAH 138 (367)
T ss_pred Eecccc------CCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH------------HHHHHHHHHHhCC----CCc
Confidence 222111 11234556666655432 346999999998742 1245566555442 223
Q ss_pred EEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHccCCCHHHHHHHHHHHH
Q 001746 870 ILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLKNLCIAAA 946 (1018)
Q Consensus 870 VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeGfSgaDL~~L~~~Aa 946 (1018)
.++|.+|+.+..+.+++.+|+ ..+.++.|+.++...++...+...++. ++..+..|+..+.| +.+.+.+.++...
T Consensus 139 ~~~Il~~~~~~kl~~~l~sr~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl~ 214 (367)
T PRK14970 139 AIFILATTEKHKIIPTILSRC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRVV 214 (367)
T ss_pred eEEEEEeCCcccCCHHHHhcc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 555556777888999999998 468899999999999999888877753 44567778877764 6666666665544
No 154
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1.7e-11 Score=145.97 Aligned_cols=166 Identities=21% Similarity=0.325 Sum_probs=124.6
Q ss_pred cccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc--------
Q 001746 730 DIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT-------- 801 (1018)
Q Consensus 730 DIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~-------- 801 (1018)
|--|++++|+.+.|++.-...... . ...-++|.||||+|||+|++.||+.+|..|+.++..-+.
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~-------~-kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKK-------L-KGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhcc-------C-CCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccc
Confidence 567999999999998865332211 1 123488999999999999999999999999999876542
Q ss_pred -hhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhcccc-----------ccCCCc
Q 001746 802 -SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR-----------SKESQK 869 (1018)
Q Consensus 802 -s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~-----------~~~~~~ 869 (1018)
-.|.|.+...+-+-...|....| +++|||||.+...-.+. +. .+||..||--. +-+-..
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGD--Pa------SALLEVLDPEQN~~F~DhYLev~yDLS~ 466 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGD--PA------SALLEVLDPEQNNTFSDHYLEVPYDLSK 466 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCC--hH------HHHHhhcCHhhcCchhhccccCccchhh
Confidence 24778777777777778876655 67799999997554332 11 23333333110 012247
Q ss_pred EEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHh
Q 001746 870 ILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLA 913 (1018)
Q Consensus 870 VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~ 913 (1018)
|++|+|+|..+.++.+|+.|+ ..|.+.-.+.++..+|.+.|+=
T Consensus 467 VmFiaTANsl~tIP~PLlDRM-EiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 467 VMFIATANSLDTIPAPLLDRM-EVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred eEEEeecCccccCChHHhcce-eeeeecCCChHHHHHHHHHhcc
Confidence 999999999999999999999 6889999999999999998863
No 155
>PRK06620 hypothetical protein; Validated
Probab=99.34 E-value=3.9e-11 Score=128.03 Aligned_cols=164 Identities=16% Similarity=0.225 Sum_probs=107.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcc
Q 001746 765 KGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFE 844 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~ 844 (1018)
+.++||||||+|||+|++++++..+..++. .... ....+ ....+|+|||||.+-
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~-----------~~~~~-----~~~d~lliDdi~~~~-------- 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF-----------NEEIL-----EKYNAFIIEDIENWQ-------- 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-----------chhHH-----hcCCEEEEeccccch--------
Confidence 679999999999999999999988764433 1000 01111 134799999999651
Q ss_pred hHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCC--CcHHHHhccCc--cccccCCCHHHHHHHHHHHHhccCCC-C
Q 001746 845 HEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFD--LDDAVIRRLPR--RIYVDLPDAENRMKILRIFLAHESLE-S 919 (1018)
Q Consensus 845 ~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~--LD~aLlrRFd~--~I~V~lPd~eeR~eILk~~L~~~~l~-~ 919 (1018)
.. +|...++.+. +..+.+||+++..|.. + +++++|+.. .+.+..|+.+.+..+++..+...++. +
T Consensus 99 ~~-------~lf~l~N~~~--e~g~~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~ 168 (214)
T PRK06620 99 EP-------ALLHIFNIIN--EKQKYLLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTIS 168 (214)
T ss_pred HH-------HHHHHHHHHH--hcCCEEEEEcCCCccccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 11 2333333332 2345677777766654 6 889999853 57788999999999999888765543 4
Q ss_pred cccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHH
Q 001746 920 GFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQSK 981 (1018)
Q Consensus 920 dvdl~~LA~~TeGfSgaDL~~L~~~Aa~~Airr~~~~~~~~~~~~~~~~~rpLT~eDF~~Al 981 (1018)
+..++.|+..+.| +.+.+.+++......+... .++||++.+.+++
T Consensus 169 ~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~~~~----------------~~~it~~~~~~~l 213 (214)
T PRK06620 169 RQIIDFLLVNLPR-EYSKIIEILENINYFALIS----------------KRKITISLVKEVL 213 (214)
T ss_pred HHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHc----------------CCCCCHHHHHHHh
Confidence 4457888888875 7777777766532111110 1568888887765
No 156
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.33 E-value=5.7e-11 Score=139.68 Aligned_cols=187 Identities=22% Similarity=0.288 Sum_probs=128.1
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA--------------- 790 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~--------------- 790 (1018)
.+|+||+|.+.+++.|...+.. .+.+..+|||||||+|||++|+++|+.+..
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~-------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~ 80 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRF-------------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAS 80 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHH
Confidence 5899999999999999888743 133467999999999999999999998743
Q ss_pred ----------cEEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhc
Q 001746 791 ----------NFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWD 860 (1018)
Q Consensus 791 ----------~fi~Is~seL~s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ld 860 (1018)
.++.+++....+ ..........+..........||+|||+|.+.. ...+.|+..++
T Consensus 81 C~~i~~~~~~d~~~i~g~~~~g--id~ir~i~~~l~~~~~~~~~kvvIIdead~lt~------------~~~n~LLk~lE 146 (451)
T PRK06305 81 CKEISSGTSLDVLEIDGASHRG--IEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK------------EAFNSLLKTLE 146 (451)
T ss_pred HHHHhcCCCCceEEeeccccCC--HHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH------------HHHHHHHHHhh
Confidence 234444322110 111111121111111234568999999999842 12456776665
Q ss_pred cccccCCCcEEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHccCCCHHHHH
Q 001746 861 GLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLK 939 (1018)
Q Consensus 861 gl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeGfSgaDL~ 939 (1018)
.. ...+++|.+|+.+..|.+++++|+ ..+.|..++.++...++...+...++. ++..+..|+..+.| +.+++.
T Consensus 147 ep----~~~~~~Il~t~~~~kl~~tI~sRc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g-dlr~a~ 220 (451)
T PRK06305 147 EP----PQHVKFFLATTEIHKIPGTILSRC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG-SLRDAE 220 (451)
T ss_pred cC----CCCceEEEEeCChHhcchHHHHhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 52 235667777788889999999999 578999999999999999888776643 34457778887765 556665
Q ss_pred HHHHHH
Q 001746 940 NLCIAA 945 (1018)
Q Consensus 940 ~L~~~A 945 (1018)
++++..
T Consensus 221 ~~Lekl 226 (451)
T PRK06305 221 SLYDYV 226 (451)
T ss_pred HHHHHH
Confidence 555543
No 157
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.32 E-value=5.6e-11 Score=136.64 Aligned_cols=213 Identities=19% Similarity=0.265 Sum_probs=144.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhh
Q 001746 763 PCKGILLFGPPGTGKTLLAKALATEA-----GANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLG 837 (1018)
Q Consensus 763 p~~gVLL~GPPGTGKT~LArAIA~el-----g~~fi~Is~seL~s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~ 837 (1018)
+...++||||.|.|||||++|+++++ +..+++++...++..++......-..-|..-+ +-.+++||||+.+.+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~g 189 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAG 189 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcC
Confidence 34569999999999999999999987 34688888888777766655444445566655 567999999999976
Q ss_pred ccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCC---CcHHHHhccCcc--ccccCCCHHHHHHHHHHHH
Q 001746 838 ARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFD---LDDAVIRRLPRR--IYVDLPDAENRMKILRIFL 912 (1018)
Q Consensus 838 ~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~---LD~aLlrRFd~~--I~V~lPd~eeR~eILk~~L 912 (1018)
+.. ...+|...++.+.. ..+-+|+.+...|.. +.+.|++||... +.+.+|+.+.|..||+...
T Consensus 190 k~~----------~qeefFh~FN~l~~--~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka 257 (408)
T COG0593 190 KER----------TQEEFFHTFNALLE--NGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKA 257 (408)
T ss_pred Chh----------HHHHHHHHHHHHHh--cCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHH
Confidence 532 12344444444432 234566666566665 558999998764 5577899999999999987
Q ss_pred hccCCC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHHhhCCCcchh
Q 001746 913 AHESLE-SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAYD 991 (1018)
Q Consensus 913 ~~~~l~-~dvdl~~LA~~TeGfSgaDL~~L~~~Aa~~Airr~~~~~~~~~~~~~~~~~rpLT~eDF~~Al~kv~PSvs~~ 991 (1018)
...++. ++.-+..+|..... +.++|..++......+... .++||.+-..++++.+......
T Consensus 258 ~~~~~~i~~ev~~~la~~~~~-nvReLegaL~~l~~~a~~~----------------~~~iTi~~v~e~L~~~~~~~~~- 319 (408)
T COG0593 258 EDRGIEIPDEVLEFLAKRLDR-NVRELEGALNRLDAFALFT----------------KRAITIDLVKEILKDLLRAGEK- 319 (408)
T ss_pred HhcCCCCCHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHhc----------------CccCcHHHHHHHHHHhhccccc-
Confidence 766654 34446777777653 6777777666554443321 1457777777777777665443
Q ss_pred hhhHHHHHHHHHHhCC
Q 001746 992 AASMNELRKWNEQYGE 1007 (1018)
Q Consensus 992 ~~~m~el~kW~diyG~ 1007 (1018)
.+..+-...-.+.||-
T Consensus 320 itie~I~~~Va~~y~v 335 (408)
T COG0593 320 ITIEDIQKIVAEYYNV 335 (408)
T ss_pred CCHHHHHHHHHHHhCC
Confidence 3333344566666664
No 158
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.32 E-value=5.9e-11 Score=141.21 Aligned_cols=186 Identities=21% Similarity=0.225 Sum_probs=132.3
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA--------------- 790 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~--------------- 790 (1018)
.+|+|++|.+.+++.|...+.. + +.++.+|||||+|+|||++|+++|+.+..
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~-----------g--rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C 77 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDN-----------N--RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQC 77 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHc-----------C--CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 5899999999999999988733 1 23456899999999999999999998732
Q ss_pred ---------cEEEEeccccchhhhhhHHHHHHHHHHHHHhc----CCeEEEecchhhhhhccCCCcchHHHHHHHHHHHh
Q 001746 791 ---------NFISITGSTLTSKWFGDAEKLTKALFSFASKL----APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 857 (1018)
Q Consensus 791 ---------~fi~Is~seL~s~~~ge~ek~I~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~ 857 (1018)
.++.+++.+-. .-..++.+...+... ...|++|||+|.|.. ...+.|+.
T Consensus 78 ~~~~~~~h~dv~eldaas~~------gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~------------~A~NALLK 139 (535)
T PRK08451 78 QSALENRHIDIIEMDAASNR------GIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK------------EAFNALLK 139 (535)
T ss_pred HHHhhcCCCeEEEecccccc------CHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH------------HHHHHHHH
Confidence 13333322110 123344444332211 235999999998832 23456676
Q ss_pred hhccccccCCCcEEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHccCCCHH
Q 001746 858 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGS 936 (1018)
Q Consensus 858 ~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeGfSga 936 (1018)
.|... ...+.+|.+|+.+..+.+++++|+ ..+.|..++.++....++..+...++. ++..+..|+..+.| +.+
T Consensus 140 ~LEEp----p~~t~FIL~ttd~~kL~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-dlR 213 (535)
T PRK08451 140 TLEEP----PSYVKFILATTDPLKLPATILSRT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-SLR 213 (535)
T ss_pred HHhhc----CCceEEEEEECChhhCchHHHhhc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHH
Confidence 66553 234556666677899999999997 688999999999999999988877654 34567788888876 888
Q ss_pred HHHHHHHHHHHH
Q 001746 937 DLKNLCIAAAYR 948 (1018)
Q Consensus 937 DL~~L~~~Aa~~ 948 (1018)
++.+++..|+..
T Consensus 214 ~alnlLdqai~~ 225 (535)
T PRK08451 214 DTLTLLDQAIIY 225 (535)
T ss_pred HHHHHHHHHHHh
Confidence 888888776644
No 159
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.32 E-value=6.3e-11 Score=143.17 Aligned_cols=184 Identities=21% Similarity=0.175 Sum_probs=131.6
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEE------------
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFI------------ 793 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi------------ 793 (1018)
.+|+||+|.+.+++.|...+.. -+.+..+||+||+|+|||++|+++|+.+.+...
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~-------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg 87 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFET-------------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCG 87 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCc
Confidence 5899999999999999987743 134568999999999999999999999865321
Q ss_pred -----------------EEeccccchhhhhhHHHHHHHHHHHHHhc----CCeEEEecchhhhhhccCCCcchHHHHHHH
Q 001746 794 -----------------SITGSTLTSKWFGDAEKLTKALFSFASKL----APVIIFVDEVDSLLGARGGAFEHEATRRMR 852 (1018)
Q Consensus 794 -----------------~Is~seL~s~~~ge~ek~I~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~e~~~~il 852 (1018)
.++... ...-..|+.+...+... ...||+|||+|.|.. ...
T Consensus 88 ~c~~C~~i~~g~h~Dv~e~~a~s------~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~------------~a~ 149 (598)
T PRK09111 88 VGEHCQAIMEGRHVDVLEMDAAS------HTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST------------AAF 149 (598)
T ss_pred ccHHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH------------HHH
Confidence 111111 01123455665555432 246999999999832 224
Q ss_pred HHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHcc
Q 001746 853 NEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATE 931 (1018)
Q Consensus 853 ~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~Te 931 (1018)
+.|+..|... ...+.+|.+|+.+..+.+.+++|+ ..+.|..|+.++...+++..+...++. ++..+..|+..+.
T Consensus 150 naLLKtLEeP----p~~~~fIl~tte~~kll~tI~SRc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~ 224 (598)
T PRK09111 150 NALLKTLEEP----PPHVKFIFATTEIRKVPVTVLSRC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAE 224 (598)
T ss_pred HHHHHHHHhC----CCCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 5666666543 234566666777778888999999 578999999999999999998877654 3345677788777
Q ss_pred CCCHHHHHHHHHHHH
Q 001746 932 GYSGSDLKNLCIAAA 946 (1018)
Q Consensus 932 GfSgaDL~~L~~~Aa 946 (1018)
| +.+++.+++..++
T Consensus 225 G-dlr~al~~Ldkli 238 (598)
T PRK09111 225 G-SVRDGLSLLDQAI 238 (598)
T ss_pred C-CHHHHHHHHHHHH
Confidence 6 7777777776654
No 160
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.29 E-value=4.9e-11 Score=130.65 Aligned_cols=173 Identities=20% Similarity=0.287 Sum_probs=120.3
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc------EEEEeccc
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN------FISITGST 799 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~------fi~Is~se 799 (1018)
.+|+|+.|++.+.+.|...+.. +...++|||||||||||+.|+++|.++..+ +...+.++
T Consensus 33 kt~de~~gQe~vV~~L~~a~~~--------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSd 98 (346)
T KOG0989|consen 33 KTFDELAGQEHVVQVLKNALLR--------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASD 98 (346)
T ss_pred CcHHhhcchHHHHHHHHHHHhh--------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccc
Confidence 6899999999999999987732 112469999999999999999999999652 23334444
Q ss_pred cchhhhhhHHHHHHHHHHHHHh---------cCC-eEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCc
Q 001746 800 LTSKWFGDAEKLTKALFSFASK---------LAP-VIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQK 869 (1018)
Q Consensus 800 L~s~~~ge~ek~I~~lF~~A~k---------~~P-sIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~ 869 (1018)
..+..+.. ..+ +-|..... .+| -||+|||.|.|...- .++|...|+.. ...
T Consensus 99 erGisvvr--~Ki-k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsda------------q~aLrr~mE~~----s~~ 159 (346)
T KOG0989|consen 99 ERGISVVR--EKI-KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDA------------QAALRRTMEDF----SRT 159 (346)
T ss_pred cccccchh--hhh-cCHHHHhhccccccCCCCCcceEEEEechhhhhHHH------------HHHHHHHHhcc----ccc
Confidence 33322111 111 11222111 122 699999999995332 23444444442 456
Q ss_pred EEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHccC
Q 001746 870 ILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEG 932 (1018)
Q Consensus 870 VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeG 932 (1018)
+.+|..||.++.|...+.+|+ ..+.|+....+.....|+.+..++++. ++-.++.|+..++|
T Consensus 160 trFiLIcnylsrii~pi~SRC-~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G 222 (346)
T KOG0989|consen 160 TRFILICNYLSRIIRPLVSRC-QKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG 222 (346)
T ss_pred eEEEEEcCChhhCChHHHhhH-HHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 888889999999999999999 567888888888888999999888876 33346667776665
No 161
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.29 E-value=1.1e-10 Score=129.74 Aligned_cols=182 Identities=25% Similarity=0.282 Sum_probs=121.1
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecccc
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAG-----ANFISITGSTL 800 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg-----~~fi~Is~seL 800 (1018)
.+|+|+.|.+.+++.+..++.. .. ..++||+||||||||++++++++++. .+++.+++++.
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~----------~~----~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~ 79 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKE----------KN----MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDE 79 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhC----------CC----CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccc
Confidence 5799999999999999988732 11 13589999999999999999999872 34566654432
Q ss_pred chhhhhhHHHHHHHH-HHHHHh-----cCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEE
Q 001746 801 TSKWFGDAEKLTKAL-FSFASK-----LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILG 874 (1018)
Q Consensus 801 ~s~~~ge~ek~I~~l-F~~A~k-----~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIa 874 (1018)
.. ...+... ...+.. ..+.+|+|||+|.+... ..+.|+..++... ....+|.
T Consensus 80 ~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~------------~~~~L~~~le~~~----~~~~lIl 137 (319)
T PRK00440 80 RG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSD------------AQQALRRTMEMYS----QNTRFIL 137 (319)
T ss_pred cc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHH------------HHHHHHHHHhcCC----CCCeEEE
Confidence 11 0111111 122221 23569999999988421 1234444444331 2345556
Q ss_pred ecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHccCCCHHHHHHHHHHH
Q 001746 875 ATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLKNLCIAA 945 (1018)
Q Consensus 875 TTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeGfSgaDL~~L~~~A 945 (1018)
++|.+..+.+++.+|+. .+.++.|+.++...+++.++...++. ++..+..++..+.| ..+.+.+.++.+
T Consensus 138 ~~~~~~~l~~~l~sr~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~~ 207 (319)
T PRK00440 138 SCNYSSKIIDPIQSRCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQAA 207 (319)
T ss_pred EeCCccccchhHHHHhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 77777888888999984 58999999999999999999876653 44467888887765 445555555443
No 162
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=1.1e-10 Score=135.35 Aligned_cols=184 Identities=17% Similarity=0.197 Sum_probs=124.6
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 791 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~-------------- 791 (1018)
.+|++|+|.+.+++.|+..+.. .+.+..+||+||||+|||++|+++|+.+.+.
T Consensus 13 ~~~~eiiGq~~~~~~L~~~~~~-------------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~ 79 (397)
T PRK14955 13 KKFADITAQEHITRTIQNSLRM-------------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTE 79 (397)
T ss_pred CcHhhccChHHHHHHHHHHHHh-------------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCC
Confidence 5799999999999999887743 1345679999999999999999999998652
Q ss_pred ------------------EEEEeccccchhhhhhHHHHHHHHHHHHHh----cCCeEEEecchhhhhhccCCCcchHHHH
Q 001746 792 ------------------FISITGSTLTSKWFGDAEKLTKALFSFASK----LAPVIIFVDEVDSLLGARGGAFEHEATR 849 (1018)
Q Consensus 792 ------------------fi~Is~seL~s~~~ge~ek~I~~lF~~A~k----~~PsIIfIDEID~L~~~r~~~~~~e~~~ 849 (1018)
++.+++... .....++.+...+.. ....||||||+|.+...
T Consensus 80 ~c~~c~~c~~~~~~~~~n~~~~~~~~~------~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~----------- 142 (397)
T PRK14955 80 PCGECESCRDFDAGTSLNISEFDAASN------NSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIA----------- 142 (397)
T ss_pred CCCCCHHHHHHhcCCCCCeEeeccccc------CCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHH-----------
Confidence 222222110 112334444333321 12359999999998421
Q ss_pred HHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCC-CcccHHHHHH
Q 001746 850 RMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELAN 928 (1018)
Q Consensus 850 ~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~ 928 (1018)
..+.|+..++.. ....++|.+|+.+..+.+.+.+|+ ..+.+..++.++...+++..+...++. ++..+..|+.
T Consensus 143 -~~~~LLk~LEep----~~~t~~Il~t~~~~kl~~tl~sR~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~ 216 (397)
T PRK14955 143 -AFNAFLKTLEEP----PPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGR 216 (397)
T ss_pred -HHHHHHHHHhcC----CCCeEEEEEeCChHHhHHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 234556555432 224555556666788888999998 478899999999999999888766542 4445777888
Q ss_pred HccCCCHHHHHHHHHHHH
Q 001746 929 ATEGYSGSDLKNLCIAAA 946 (1018)
Q Consensus 929 ~TeGfSgaDL~~L~~~Aa 946 (1018)
.+.| +.+.+.+.++.+.
T Consensus 217 ~s~g-~lr~a~~~L~kl~ 233 (397)
T PRK14955 217 KAQG-SMRDAQSILDQVI 233 (397)
T ss_pred HcCC-CHHHHHHHHHHHH
Confidence 8876 6666666665543
No 163
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=2.2e-10 Score=138.86 Aligned_cols=184 Identities=17% Similarity=0.220 Sum_probs=125.9
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 791 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~-------------- 791 (1018)
.+|++|+|.+.+++.|+..+.. -+-+..+||+||+|+|||++|+++|+.+.+.
T Consensus 13 ~~f~eivGQe~i~~~L~~~i~~-------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~ 79 (620)
T PRK14954 13 SKFADITAQEHITHTIQNSLRM-------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE 79 (620)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC
Confidence 5799999999999999887733 1334679999999999999999999998652
Q ss_pred ------------------EEEEeccccchhhhhhHHHHHHHHHHHHH----hcCCeEEEecchhhhhhccCCCcchHHHH
Q 001746 792 ------------------FISITGSTLTSKWFGDAEKLTKALFSFAS----KLAPVIIFVDEVDSLLGARGGAFEHEATR 849 (1018)
Q Consensus 792 ------------------fi~Is~seL~s~~~ge~ek~I~~lF~~A~----k~~PsIIfIDEID~L~~~r~~~~~~e~~~ 849 (1018)
|+.+++... .....|+.+...+. ....-||+|||+|.|..
T Consensus 80 ~Cg~C~sC~~~~~g~~~n~~~~d~~s~------~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~------------ 141 (620)
T PRK14954 80 PCGECESCRDFDAGTSLNISEFDAASN------NSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST------------ 141 (620)
T ss_pred CCccCHHHHHHhccCCCCeEEeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH------------
Confidence 122222110 01223334333332 12346999999999842
Q ss_pred HHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCC-CcccHHHHHH
Q 001746 850 RMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELAN 928 (1018)
Q Consensus 850 ~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~ 928 (1018)
...+.|+..|+.. + ..+++|.+|+.+..|.+.+++|+ ..+.|..++.++...++...+...++. ++..+..|+.
T Consensus 142 ~a~naLLK~LEeP---p-~~tv~IL~t~~~~kLl~TI~SRc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~ 216 (620)
T PRK14954 142 AAFNAFLKTLEEP---P-PHAIFIFATTELHKIPATIASRC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIAR 216 (620)
T ss_pred HHHHHHHHHHhCC---C-CCeEEEEEeCChhhhhHHHHhhc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 1245677666553 2 23555555566788889999998 688999999999999998888766642 4456788888
Q ss_pred HccCCCHHHHHHHHHHHH
Q 001746 929 ATEGYSGSDLKNLCIAAA 946 (1018)
Q Consensus 929 ~TeGfSgaDL~~L~~~Aa 946 (1018)
.+.| +.+++.+.+...+
T Consensus 217 ~s~G-dlr~al~eLeKL~ 233 (620)
T PRK14954 217 KAQG-SMRDAQSILDQVI 233 (620)
T ss_pred HhCC-CHHHHHHHHHHHH
Confidence 8876 5666666655443
No 164
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=1.4e-10 Score=140.81 Aligned_cols=182 Identities=23% Similarity=0.258 Sum_probs=127.7
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 791 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~-------------- 791 (1018)
.+|+++.|.+.+++.|...+.. + +....+||+||+|+|||++|+++|+.+.+.
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~-----------~--rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~ 79 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALIS-----------N--RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCE 79 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHc-----------C--CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccH
Confidence 5799999999999999988744 1 123579999999999999999999998652
Q ss_pred ------------EEEEeccccchhhhhhHHHHHHHHHHHHHhc----CCeEEEecchhhhhhccCCCcchHHHHHHHHHH
Q 001746 792 ------------FISITGSTLTSKWFGDAEKLTKALFSFASKL----APVIIFVDEVDSLLGARGGAFEHEATRRMRNEF 855 (1018)
Q Consensus 792 ------------fi~Is~seL~s~~~ge~ek~I~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~L 855 (1018)
++.++.. .......++.+...+... ...||||||+|.|.. ...+.|
T Consensus 80 ~C~~i~~g~h~D~~ei~~~------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~------------~a~naL 141 (620)
T PRK14948 80 LCRAIAAGNALDVIEIDAA------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST------------AAFNAL 141 (620)
T ss_pred HHHHHhcCCCccEEEEecc------ccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH------------HHHHHH
Confidence 2222221 112234566666655432 236999999998832 234677
Q ss_pred HhhhccccccCCCcEEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHccCCC
Q 001746 856 MSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYS 934 (1018)
Q Consensus 856 L~~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeGfS 934 (1018)
+..|+.. ...+++|++|+.+..+.+.+++|+ ..+.|..++.++....+..++...++. +...+..|+..+.| .
T Consensus 142 LK~LEeP----p~~tvfIL~t~~~~~llpTIrSRc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G-~ 215 (620)
T PRK14948 142 LKTLEEP----PPRVVFVLATTDPQRVLPTIISRC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQG-G 215 (620)
T ss_pred HHHHhcC----CcCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-C
Confidence 7777642 235667777778888999999998 678888899988888888887765543 23447777887776 3
Q ss_pred HHHHHHHHHH
Q 001746 935 GSDLKNLCIA 944 (1018)
Q Consensus 935 gaDL~~L~~~ 944 (1018)
.+++.++++.
T Consensus 216 lr~A~~lLek 225 (620)
T PRK14948 216 LRDAESLLDQ 225 (620)
T ss_pred HHHHHHHHHH
Confidence 4555555443
No 165
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.25 E-value=1.5e-10 Score=126.87 Aligned_cols=134 Identities=25% Similarity=0.336 Sum_probs=90.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc------cchhhhhhHHHH-HHH-------------------HHHH
Q 001746 765 KGILLFGPPGTGKTLLAKALATEAGANFISITGST------LTSKWFGDAEKL-TKA-------------------LFSF 818 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~se------L~s~~~ge~ek~-I~~-------------------lF~~ 818 (1018)
.+|||+||||||||++|+++|..+|.+++.+++.. +++.+.+..... +.. .+..
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 56999999999999999999999999999987653 333332211111 111 1112
Q ss_pred HHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhcccc--cc----------CCCcEEEEEecCCCC-----C
Q 001746 819 ASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR--SK----------ESQKILILGATNRPF-----D 881 (1018)
Q Consensus 819 A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~--~~----------~~~~VlVIaTTN~p~-----~ 881 (1018)
|.+ .+.+|+||||+.+-. .+.+.|+..|+... .. ....+.||+|+|... .
T Consensus 102 A~~-~g~~lllDEi~r~~~------------~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~ 168 (262)
T TIGR02640 102 AVR-EGFTLVYDEFTRSKP------------ETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHE 168 (262)
T ss_pred HHH-cCCEEEEcchhhCCH------------HHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceec
Confidence 222 357999999998632 22333444443210 00 123567999999763 5
Q ss_pred CcHHHHhccCccccccCCCHHHHHHHHHHHH
Q 001746 882 LDDAVIRRLPRRIYVDLPDAENRMKILRIFL 912 (1018)
Q Consensus 882 LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L 912 (1018)
+++++++|| ..+.++.|+.++..+|++...
T Consensus 169 l~~aL~~R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 169 TQDALLDRL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred ccHHHHhhc-EEEECCCCCHHHHHHHHHHhh
Confidence 789999999 678999999999999998875
No 166
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.24 E-value=3.2e-10 Score=138.01 Aligned_cols=224 Identities=19% Similarity=0.229 Sum_probs=133.8
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA----------GANFISI 795 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~el----------g~~fi~I 795 (1018)
.+|++++|.+.....+...+.. ..+.+++|+||||||||++|+++++.. +.+|+.+
T Consensus 151 ~~~~~iiGqs~~~~~l~~~ia~--------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i 216 (615)
T TIGR02903 151 RAFSEIVGQERAIKALLAKVAS--------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEV 216 (615)
T ss_pred CcHHhceeCcHHHHHHHHHHhc--------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEE
Confidence 5799999999988887665522 123469999999999999999998765 3578999
Q ss_pred eccccch-------hhhhhHHH----HHHHHHHH----------HHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHH
Q 001746 796 TGSTLTS-------KWFGDAEK----LTKALFSF----------ASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNE 854 (1018)
Q Consensus 796 s~seL~s-------~~~ge~ek----~I~~lF~~----------A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~ 854 (1018)
++..+.. .+++.... .....+.. .......||||||++.|-.. .. ..
T Consensus 217 ~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~--------~Q----~~ 284 (615)
T TIGR02903 217 DGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPL--------LQ----NK 284 (615)
T ss_pred echhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHH--------HH----HH
Confidence 8876521 11111100 00111110 01223579999999987322 11 22
Q ss_pred HHhhhccc------------------------cccCCCcEEEEE-ecCCCCCCcHHHHhccCccccccCCCHHHHHHHHH
Q 001746 855 FMSAWDGL------------------------RSKESQKILILG-ATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILR 909 (1018)
Q Consensus 855 LL~~Ldgl------------------------~~~~~~~VlVIa-TTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk 909 (1018)
|+..++.- .......+++|+ ||+.+..+++++++||. .+.+++++.+++..|++
T Consensus 285 Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~-~i~~~pls~edi~~Il~ 363 (615)
T TIGR02903 285 LLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCA-EVFFEPLTPEDIALIVL 363 (615)
T ss_pred HHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhcee-EEEeCCCCHHHHHHHHH
Confidence 22222110 000122345554 55778889999999995 67888899999999999
Q ss_pred HHHhccCCC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHHhhC
Q 001746 910 IFLAHESLE-SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQSKAKVG 985 (1018)
Q Consensus 910 ~~L~~~~l~-~dvdl~~LA~~TeGfSgaDL~~L~~~Aa~~Airr~~~~~~~~~~~~~~~~~rpLT~eDF~~Al~kv~ 985 (1018)
..+....+. ++..+..|+..+. .++...+++..+.-.+..+.... . .......|+.+|+.+++..-+
T Consensus 364 ~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~-~------~~~~~~~I~~edv~~~l~~~r 431 (615)
T TIGR02903 364 NAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEA-G------KENDKVTITQDDVYEVIQISR 431 (615)
T ss_pred HHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHh-c------cCCCCeeECHHHHHHHhCCCc
Confidence 998865432 2333455555442 45555555555543332222100 0 001125799999999987543
No 167
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=2.8e-10 Score=137.97 Aligned_cols=183 Identities=20% Similarity=0.240 Sum_probs=125.2
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 791 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~-------------- 791 (1018)
.+|+||+|.+.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+.+.
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~-------------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~ 79 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAE-------------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEM 79 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHh-------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHH
Confidence 5799999999999999887743 1234568999999999999999999988532
Q ss_pred -----------EEEEeccccchhhhhhHHHHHHHHHHHHHh----cCCeEEEecchhhhhhccCCCcchHHHHHHHHHHH
Q 001746 792 -----------FISITGSTLTSKWFGDAEKLTKALFSFASK----LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFM 856 (1018)
Q Consensus 792 -----------fi~Is~seL~s~~~ge~ek~I~~lF~~A~k----~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL 856 (1018)
++.++.... .....++.+...+.. ....||||||+|.|.. ...+.|+
T Consensus 80 c~~i~~~~~~d~~~i~~~~~------~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~------------~a~naLL 141 (585)
T PRK14950 80 CRAIAEGSAVDVIEMDAASH------TSVDDAREIIERVQFRPALARYKVYIIDEVHMLST------------AAFNALL 141 (585)
T ss_pred HHHHhcCCCCeEEEEecccc------CCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH------------HHHHHHH
Confidence 222332111 011223333332221 2346999999998842 2245666
Q ss_pred hhhccccccCCCcEEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHccCCCH
Q 001746 857 SAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSG 935 (1018)
Q Consensus 857 ~~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeGfSg 935 (1018)
..++.. ...+++|.+++.++.+.+.+++|+ ..+.|..++..+...++..++...++. ++..+..|+..+.| +.
T Consensus 142 k~LEep----p~~tv~Il~t~~~~kll~tI~SR~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-dl 215 (585)
T PRK14950 142 KTLEEP----PPHAIFILATTEVHKVPATILSRC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-SM 215 (585)
T ss_pred HHHhcC----CCCeEEEEEeCChhhhhHHHHhcc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 666553 234566666677778888999998 568899999999999999888776653 33447778887776 77
Q ss_pred HHHHHHHHHH
Q 001746 936 SDLKNLCIAA 945 (1018)
Q Consensus 936 aDL~~L~~~A 945 (1018)
+++.++++..
T Consensus 216 r~al~~LekL 225 (585)
T PRK14950 216 RDAENLLQQL 225 (585)
T ss_pred HHHHHHHHHH
Confidence 7777766643
No 168
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.23 E-value=2.3e-10 Score=109.66 Aligned_cols=122 Identities=40% Similarity=0.635 Sum_probs=81.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhhHHHH---HHHHHHHHHhcCCeEEEecchhhhhh
Q 001746 764 CKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGDAEKL---TKALFSFASKLAPVIIFVDEVDSLLG 837 (1018)
Q Consensus 764 ~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~ge~ek~---I~~lF~~A~k~~PsIIfIDEID~L~~ 837 (1018)
..+++|+||||||||++++++++.+ +.+++.+++.............. ....+..+....+.+|+|||++.+..
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~ 98 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSR 98 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhH
Confidence 3579999999999999999999998 88999999877655433322111 12223344456789999999998721
Q ss_pred ccCCCcchHHHHHHHHHHHhhhccccc--cCCCcEEEEEecCCCC--CCcHHHHhccCcccccc
Q 001746 838 ARGGAFEHEATRRMRNEFMSAWDGLRS--KESQKILILGATNRPF--DLDDAVIRRLPRRIYVD 897 (1018)
Q Consensus 838 ~r~~~~~~e~~~~il~~LL~~Ldgl~~--~~~~~VlVIaTTN~p~--~LD~aLlrRFd~~I~V~ 897 (1018)
... ..++..+..... ....++.+|++++... .+++.+.+||+..+.++
T Consensus 99 --------~~~----~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~~ 150 (151)
T cd00009 99 --------GAQ----NALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIP 150 (151)
T ss_pred --------HHH----HHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHhhhccEeecC
Confidence 111 222222222211 1134678888888777 78889999998666654
No 169
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.18 E-value=1.5e-10 Score=136.64 Aligned_cols=192 Identities=22% Similarity=0.236 Sum_probs=140.3
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE-------E-----
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANF-------I----- 793 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~f-------i----- 793 (1018)
.+|+|+.|.+.+...|...+.. .+-..+.||.||.|||||++||.+|+.+++.- .
T Consensus 13 ~~F~evvGQe~v~~~L~nal~~-------------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C 79 (515)
T COG2812 13 KTFDDVVGQEHVVKTLSNALEN-------------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC 79 (515)
T ss_pred ccHHHhcccHHHHHHHHHHHHh-------------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh
Confidence 5799999999999999998855 23346799999999999999999999986531 0
Q ss_pred -EEecc---ccch--hhhhhHHHHHHHHHHHHH----hcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhcccc
Q 001746 794 -SITGS---TLTS--KWFGDAEKLTKALFSFAS----KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR 863 (1018)
Q Consensus 794 -~Is~s---eL~s--~~~ge~ek~I~~lF~~A~----k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~ 863 (1018)
.++.. +++. .-....-..++.+-+.+. ....-|++|||++.|. ....|.||..+..-
T Consensus 80 k~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS------------~~afNALLKTLEEP- 146 (515)
T COG2812 80 KEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS------------KQAFNALLKTLEEP- 146 (515)
T ss_pred HhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh------------HHHHHHHhcccccC-
Confidence 01111 1100 000112334555555442 3334699999999873 34467777766543
Q ss_pred ccCCCcEEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCCC-cccHHHHHHHccCCCHHHHHHHH
Q 001746 864 SKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLES-GFQFNELANATEGYSGSDLKNLC 942 (1018)
Q Consensus 864 ~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~~-dvdl~~LA~~TeGfSgaDL~~L~ 942 (1018)
...|.+|.+|..+..++..+++|+ ..+.|..-+.++....|..++.++++.. +..+..+|...+| +.+|...++
T Consensus 147 ---P~hV~FIlATTe~~Kip~TIlSRc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDalslL 221 (515)
T COG2812 147 ---PSHVKFILATTEPQKIPNTILSRC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALSLL 221 (515)
T ss_pred ---ccCeEEEEecCCcCcCchhhhhcc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHHHH
Confidence 346889999999999999999999 6788999999999999999999888763 3447778888887 778888888
Q ss_pred HHHHHH
Q 001746 943 IAAAYR 948 (1018)
Q Consensus 943 ~~Aa~~ 948 (1018)
..|...
T Consensus 222 Dq~i~~ 227 (515)
T COG2812 222 DQAIAF 227 (515)
T ss_pred HHHHHc
Confidence 877654
No 170
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.16 E-value=1e-09 Score=133.45 Aligned_cols=183 Identities=16% Similarity=0.218 Sum_probs=129.3
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA--------------- 790 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~--------------- 790 (1018)
.+|+||+|.+.+++.|...+.. .+.++.+|||||+|+|||++|+++|+.+.+
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~-------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~s 80 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIAT-------------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECES 80 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchH
Confidence 5799999999999999988743 133466999999999999999999998752
Q ss_pred ----------cEEEEeccccchhhhhhHHHHHHHHHHHHHhc----CCeEEEecchhhhhhccCCCcchHHHHHHHHHHH
Q 001746 791 ----------NFISITGSTLTSKWFGDAEKLTKALFSFASKL----APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFM 856 (1018)
Q Consensus 791 ----------~fi~Is~seL~s~~~ge~ek~I~~lF~~A~k~----~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL 856 (1018)
+++.+++... .....++.+...+... ..-|++|||+|.|.. ...+.|+
T Consensus 81 C~~~~~~~~~n~~~ld~~~~------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~------------~a~naLL 142 (614)
T PRK14971 81 CVAFNEQRSYNIHELDAASN------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ------------AAFNAFL 142 (614)
T ss_pred HHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH------------HHHHHHH
Confidence 3444443211 1123455555444332 235999999999832 2345677
Q ss_pred hhhccccccCCCcEEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHccCCCH
Q 001746 857 SAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSG 935 (1018)
Q Consensus 857 ~~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeGfSg 935 (1018)
..|+.. ....++|.+|+.+..+-+.|++|+ ..+.|..++.++...+++.++...++. ++..+..|+..+.| +.
T Consensus 143 K~LEep----p~~tifIL~tt~~~kIl~tI~SRc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g-dl 216 (614)
T PRK14971 143 KTLEEP----PSYAIFILATTEKHKILPTILSRC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG-GM 216 (614)
T ss_pred HHHhCC----CCCeEEEEEeCCchhchHHHHhhh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 766553 224556666667788999999998 678999999999999999988877765 33347778887765 66
Q ss_pred HHHHHHHHHH
Q 001746 936 SDLKNLCIAA 945 (1018)
Q Consensus 936 aDL~~L~~~A 945 (1018)
+++.+++...
T Consensus 217 r~al~~Lekl 226 (614)
T PRK14971 217 RDALSIFDQV 226 (614)
T ss_pred HHHHHHHHHH
Confidence 6666665543
No 171
>PRK09087 hypothetical protein; Validated
Probab=99.15 E-value=5.4e-10 Score=120.26 Aligned_cols=172 Identities=15% Similarity=0.133 Sum_probs=109.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcc
Q 001746 765 KGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFE 844 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~ 844 (1018)
+.++|+||+|+|||||+++++...++.++.. ..+.... +.... ..+|+|||++.+.. .
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~--~~~~~~~-----------~~~~~---~~~l~iDDi~~~~~------~ 102 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHP--NEIGSDA-----------ANAAA---EGPVLIEDIDAGGF------D 102 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecH--HHcchHH-----------HHhhh---cCeEEEECCCCCCC------C
Confidence 3499999999999999999999877665443 2222111 11111 15899999997621 1
Q ss_pred hHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCC---CcHHHHhccC--ccccccCCCHHHHHHHHHHHHhccCCC-
Q 001746 845 HEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFD---LDDAVIRRLP--RRIYVDLPDAENRMKILRIFLAHESLE- 918 (1018)
Q Consensus 845 ~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~---LD~aLlrRFd--~~I~V~lPd~eeR~eILk~~L~~~~l~- 918 (1018)
.+ +|...++.+. +..+.+||+++..|.. ..+.+++||. ..+.+..|+.+.|.+|++..+...++.
T Consensus 103 ~~-------~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l 173 (226)
T PRK09087 103 ET-------GLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYV 173 (226)
T ss_pred HH-------HHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCC
Confidence 11 2333333332 2235667766655543 3678999985 567788999999999999999876553
Q ss_pred CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHHhh
Q 001746 919 SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQSKAKV 984 (1018)
Q Consensus 919 ~dvdl~~LA~~TeGfSgaDL~~L~~~Aa~~Airr~~~~~~~~~~~~~~~~~rpLT~eDF~~Al~kv 984 (1018)
++..++.|+....+ +.+.+..++......++.. .++||...++++++.+
T Consensus 174 ~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~~----------------~~~it~~~~~~~l~~~ 222 (226)
T PRK09087 174 DPHVVYYLVSRMER-SLFAAQTIVDRLDRLALER----------------KSRITRALAAEVLNEM 222 (226)
T ss_pred CHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHh----------------CCCCCHHHHHHHHHhh
Confidence 44457778887763 4444444333322222111 1679999999988765
No 172
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1.2e-09 Score=120.24 Aligned_cols=178 Identities=24% Similarity=0.361 Sum_probs=111.7
Q ss_pred CCceeeCHHHHHHHHHHhhhhhhccCCCcccccccchhHhhhhhcccccCCCCCCccccc-ccChHHHHHHHHHHHHccc
Q 001746 671 GQRLHLPRESLEIAILRLKEQETASRKPTQNLKNLAKDEYESNFVSAVVPPGEIGVRFDD-IGALEDVKKALNELVILPM 749 (1018)
Q Consensus 671 ~~kv~V~~~df~~Al~~l~p~~~~~~~~~~~l~~~~~~e~e~~~~~~ii~~~e~~vtfdD-IgGle~vk~~L~e~V~~pL 749 (1018)
+..+.|+.+.....-+.+........ ...-...+-.|.++...+|+ ++|++..|+.|.-.|....
T Consensus 16 gp~v~ICdeCielc~~ii~ee~~~~~--------------~~~~~~~lPtP~eik~~Ld~YVIGQe~AKKvLsVAVYNHY 81 (408)
T COG1219 16 GPGVYICDECIELCNDIIREELKEAL--------------DEKELSELPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHY 81 (408)
T ss_pred CCCceehHHHHHHHHHHHHHhhhhhc--------------cchhhccCCChHHHHHHhhhheecchhhhceeeeeehhHH
Confidence 44557888888777665554311110 00001122223334444454 5778888877766665543
Q ss_pred CCchhhcc-CCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch-hhhhhH-HHHHHHHHHHH----Hhc
Q 001746 750 RRPDLFSR-GNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS-KWFGDA-EKLTKALFSFA----SKL 822 (1018)
Q Consensus 750 ~~~elf~~-~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~s-~~~ge~-ek~I~~lF~~A----~k~ 822 (1018)
++-..... ...--...+|||.||.|||||+||+.+|+.+++||-.-++.+|.. .|+|+- |..+..+...| .+.
T Consensus 82 KRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rA 161 (408)
T COG1219 82 KRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERA 161 (408)
T ss_pred HHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHH
Confidence 33221111 111112356999999999999999999999999999999998865 578865 66666666554 344
Q ss_pred CCeEEEecchhhhhhccCCCc-chH-HHHHHHHHHHhhhccc
Q 001746 823 APVIIFVDEVDSLLGARGGAF-EHE-ATRRMRNEFMSAWDGL 862 (1018)
Q Consensus 823 ~PsIIfIDEID~L~~~r~~~~-~~e-~~~~il~~LL~~Ldgl 862 (1018)
...||||||||.+..+..+.. ... ....+.+.||..+.|.
T Consensus 162 erGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 162 ERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred hCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 568999999999987764432 222 2345677888888864
No 173
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.08 E-value=5e-09 Score=119.69 Aligned_cols=189 Identities=16% Similarity=0.090 Sum_probs=121.7
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------EEEE-e-
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------FISI-T- 796 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~-------fi~I-s- 796 (1018)
..|++|.|.+.+.+.|...+.. -+.+..+||+||+|+|||++|+++|+.+.+. .... .
T Consensus 20 ~~~~~l~Gh~~a~~~L~~a~~~-------------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~ 86 (351)
T PRK09112 20 SENTRLFGHEEAEAFLAQAYRE-------------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD 86 (351)
T ss_pred CchhhccCcHHHHHHHHHHHHc-------------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC
Confidence 4688999999999999988743 1345679999999999999999999988541 1000 0
Q ss_pred --c-----------cccc--hhh--h------h-hHHHHHHHHHHHH----HhcCCeEEEecchhhhhhccCCCcchHHH
Q 001746 797 --G-----------STLT--SKW--F------G-DAEKLTKALFSFA----SKLAPVIIFVDEVDSLLGARGGAFEHEAT 848 (1018)
Q Consensus 797 --~-----------seL~--s~~--~------g-e~ek~I~~lF~~A----~k~~PsIIfIDEID~L~~~r~~~~~~e~~ 848 (1018)
+ +++. ... . . -....++.+-... ......||+|||+|.|..
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~----------- 155 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNR----------- 155 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCH-----------
Confidence 0 0110 000 0 0 0012233332222 223456999999999832
Q ss_pred HHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCCCcccHHHHHH
Q 001746 849 RRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELAN 928 (1018)
Q Consensus 849 ~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~ 928 (1018)
...+.|+..++.. ..+.++|..|+.+..+.+.+++|+ ..+.+++|+.++..+++........+ ++..+..++.
T Consensus 156 -~aanaLLk~LEEp----p~~~~fiLit~~~~~llptIrSRc-~~i~l~pl~~~~~~~~L~~~~~~~~~-~~~~~~~i~~ 228 (351)
T PRK09112 156 -NAANAILKTLEEP----PARALFILISHSSGRLLPTIRSRC-QPISLKPLDDDELKKALSHLGSSQGS-DGEITEALLQ 228 (351)
T ss_pred -HHHHHHHHHHhcC----CCCceEEEEECChhhccHHHHhhc-cEEEecCCCHHHHHHHHHHhhcccCC-CHHHHHHHHH
Confidence 2245677777653 224555556677888899999999 68999999999999999875433222 2333667777
Q ss_pred HccCCCHHHHHHHHHHHH
Q 001746 929 ATEGYSGSDLKNLCIAAA 946 (1018)
Q Consensus 929 ~TeGfSgaDL~~L~~~Aa 946 (1018)
.+.| +++...+++....
T Consensus 229 ~s~G-~pr~Al~ll~~~~ 245 (351)
T PRK09112 229 RSKG-SVRKALLLLNYGG 245 (351)
T ss_pred HcCC-CHHHHHHHHhcCc
Confidence 7776 5555555554443
No 174
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.08 E-value=8.2e-10 Score=124.13 Aligned_cols=140 Identities=15% Similarity=0.195 Sum_probs=95.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchh--hhhhHH----------HHHHHHHHHHHhcCCeEEEecc
Q 001746 764 CKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSK--WFGDAE----------KLTKALFSFASKLAPVIIFVDE 831 (1018)
Q Consensus 764 ~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~s~--~~ge~e----------k~I~~lF~~A~k~~PsIIfIDE 831 (1018)
.++|||.||||||||++|+++|..++.+++.+++...+.. ..|... ......+..|.+ .+.+|++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEech
Confidence 3579999999999999999999999999999987654433 333211 111223444443 568899999
Q ss_pred hhhhhhccCCCcchHHHHHHHHHHHhh-----h-ccccc-cCCCcEEEEEecCCCC------------CCcHHHHhccCc
Q 001746 832 VDSLLGARGGAFEHEATRRMRNEFMSA-----W-DGLRS-KESQKILILGATNRPF------------DLDDAVIRRLPR 892 (1018)
Q Consensus 832 ID~L~~~r~~~~~~e~~~~il~~LL~~-----L-dgl~~-~~~~~VlVIaTTN~p~------------~LD~aLlrRFd~ 892 (1018)
+|..-+. ....++.+|.. + +.... .....+.||||+|... .|++++++||..
T Consensus 143 in~a~p~---------~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i 213 (327)
T TIGR01650 143 YDAGRPD---------VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSI 213 (327)
T ss_pred hhccCHH---------HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheee
Confidence 9986322 11223333321 1 11111 1334688999999864 278999999987
Q ss_pred cccccCCCHHHHHHHHHHHHh
Q 001746 893 RIYVDLPDAENRMKILRIFLA 913 (1018)
Q Consensus 893 ~I~V~lPd~eeR~eILk~~L~ 913 (1018)
.+.++.|+.++-.+|+.....
T Consensus 214 ~~~~~Yp~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 214 VTTLNYLEHDNEAAIVLAKAK 234 (327)
T ss_pred EeeCCCCCHHHHHHHHHhhcc
Confidence 788999999999999987643
No 175
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=6.1e-09 Score=119.53 Aligned_cols=220 Identities=22% Similarity=0.262 Sum_probs=137.7
Q ss_pred ccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-----EEEEeccccchhh-
Q 001746 731 IGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-----FISITGSTLTSKW- 804 (1018)
Q Consensus 731 IgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~-----fi~Is~seL~s~~- 804 (1018)
+.+.+..++++...+.-.+. + ..|.++++|||||||||.+++.++.++.-. +++++|..+.+.+
T Consensus 19 l~~Re~ei~~l~~~l~~~~~-------~---~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~ 88 (366)
T COG1474 19 LPHREEEINQLASFLAPALR-------G---ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQ 88 (366)
T ss_pred ccccHHHHHHHHHHHHHHhc-------C---CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHH
Confidence 67788888888887644322 1 123459999999999999999999998433 8999987653321
Q ss_pred --------------hhh-HHHHHHHHHHHHH-hcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCC
Q 001746 805 --------------FGD-AEKLTKALFSFAS-KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQ 868 (1018)
Q Consensus 805 --------------~ge-~ek~I~~lF~~A~-k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~ 868 (1018)
.|. .......+++... .....||++||+|.|....+ .++-.|+..-.. ...
T Consensus 89 i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~---------~~LY~L~r~~~~----~~~ 155 (366)
T COG1474 89 VLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG---------EVLYSLLRAPGE----NKV 155 (366)
T ss_pred HHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc---------hHHHHHHhhccc----cce
Confidence 011 1222333333322 24567999999999976532 223333332222 256
Q ss_pred cEEEEEecCCCC---CCcHHHHhccC-ccccccCCCHHHHHHHHHHHHhccC---CCCcccHHHHHHHccCC--CHHHHH
Q 001746 869 KILILGATNRPF---DLDDAVIRRLP-RRIYVDLPDAENRMKILRIFLAHES---LESGFQFNELANATEGY--SGSDLK 939 (1018)
Q Consensus 869 ~VlVIaTTN~p~---~LD~aLlrRFd-~~I~V~lPd~eeR~eILk~~L~~~~---l~~dvdl~~LA~~TeGf--SgaDL~ 939 (1018)
++.||+.+|..+ .+++.+.++|. ..|.|++.+.+|...|++......- .-++--+..+|..+.-. ..+--.
T Consensus 156 ~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~ai 235 (366)
T COG1474 156 KVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAI 235 (366)
T ss_pred eEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHH
Confidence 789999998874 58889998764 4588999999999999998876321 11222344444433322 334444
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHHhhCCCc
Q 001746 940 NLCIAAAYRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQSKAKVGPSV 988 (1018)
Q Consensus 940 ~L~~~Aa~~Airr~~~~~~~~~~~~~~~~~rpLT~eDF~~Al~kv~PSv 988 (1018)
.+|+.|+..|-++. ...++.+|..+|..++.+.+
T Consensus 236 dilr~A~eiAe~~~---------------~~~v~~~~v~~a~~~~~~~~ 269 (366)
T COG1474 236 DILRRAGEIAEREG---------------SRKVSEDHVREAQEEIERDV 269 (366)
T ss_pred HHHHHHHHHHHhhC---------------CCCcCHHHHHHHHHHhhHHH
Confidence 56666766654431 14467777777755554433
No 176
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.07 E-value=1.4e-09 Score=123.28 Aligned_cols=161 Identities=23% Similarity=0.357 Sum_probs=99.5
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------CCc--EEEEe
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA-------GAN--FISIT 796 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~el-------g~~--fi~Is 796 (1018)
..|++|.|.++++..|.-.... ....++||+|+||||||++|+++|.-+ +.+ +..+.
T Consensus 5 ~~f~~i~Gq~~~~~~l~~~~~~--------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 5 FPFSAIVGQEEMKQAMVLTAID--------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCHHHhCCHHHHHHHHHHHHhc--------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 5699999999999988654321 112579999999999999999999988 331 11111
Q ss_pred c---------cccc---------------hhhhhhH--HHHH-HH--HHHH--HHhcCCeEEEecchhhhhhccCCCcch
Q 001746 797 G---------STLT---------------SKWFGDA--EKLT-KA--LFSF--ASKLAPVIIFVDEVDSLLGARGGAFEH 845 (1018)
Q Consensus 797 ~---------seL~---------------s~~~ge~--ek~I-~~--lF~~--A~k~~PsIIfIDEID~L~~~r~~~~~~ 845 (1018)
+ ..+. ...+|.. +..+ .. .|.. ..+....+||||||+.+..
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~-------- 142 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLED-------- 142 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCH--------
Confidence 0 0000 0011110 0000 00 0110 0011236999999999732
Q ss_pred HHHHHHHHHHHhhhc---------cccccCCCcEEEEEecCCCC-CCcHHHHhccCccccccCCCH-HHHHHHHHHHH
Q 001746 846 EATRRMRNEFMSAWD---------GLRSKESQKILILGATNRPF-DLDDAVIRRLPRRIYVDLPDA-ENRMKILRIFL 912 (1018)
Q Consensus 846 e~~~~il~~LL~~Ld---------gl~~~~~~~VlVIaTTN~p~-~LD~aLlrRFd~~I~V~lPd~-eeR~eILk~~L 912 (1018)
.+.+.|+..|+ |....-..++++|+|+|..+ .++++++.||...+.++.|.. ++|.+|++...
T Consensus 143 ----~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 143 ----HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred ----HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhh
Confidence 23334444443 22222335789999988755 599999999999999988766 89999998754
No 177
>PHA02244 ATPase-like protein
Probab=99.06 E-value=1.7e-09 Score=123.03 Aligned_cols=125 Identities=19% Similarity=0.222 Sum_probs=79.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhh---hhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCC
Q 001746 765 KGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWF---GDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGG 841 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~s~~~---ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~ 841 (1018)
.+|||+||||||||+||+++|..++.+|+.++...-..... .........-|..|. ....+|||||++.+.+..
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~-~~GgvLiLDEId~a~p~v-- 196 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAF-KKGGLFFIDEIDASIPEA-- 196 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHh-hcCCEEEEeCcCcCCHHH--
Confidence 46999999999999999999999999999987421000011 111111112233333 256899999999874221
Q ss_pred CcchHHHHHHHHHHH-----hhhccccccCCCcEEEEEecCCC-----------CCCcHHHHhccCccccccCCCH
Q 001746 842 AFEHEATRRMRNEFM-----SAWDGLRSKESQKILILGATNRP-----------FDLDDAVIRRLPRRIYVDLPDA 901 (1018)
Q Consensus 842 ~~~~e~~~~il~~LL-----~~Ldgl~~~~~~~VlVIaTTN~p-----------~~LD~aLlrRFd~~I~V~lPd~ 901 (1018)
...++.++ ..+++.. ....++.+|+|+|.+ ..|++++++|| ..|.+..|+.
T Consensus 197 -------q~~L~~lLd~r~l~l~g~~i-~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRF-v~I~~dyp~~ 263 (383)
T PHA02244 197 -------LIIINSAIANKFFDFADERV-TAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRF-APIEFDYDEK 263 (383)
T ss_pred -------HHHHHHHhccCeEEecCcEE-ecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhc-EEeeCCCCcH
Confidence 11122222 1122221 123468899999974 45899999999 5788999884
No 178
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.04 E-value=9.1e-09 Score=115.53 Aligned_cols=170 Identities=15% Similarity=0.200 Sum_probs=112.9
Q ss_pred ccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------cEEEEecc
Q 001746 727 RFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA--------NFISITGS 798 (1018)
Q Consensus 727 tfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~--------~fi~Is~s 798 (1018)
+|++|.|.+.+++.|...+.. -+.++.+||+||+|+|||++|+++|+.+-+ .++.+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~-------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~ 68 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK-------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI 68 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc-------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc
Confidence 589999999999999887732 133467899999999999999999998732 22333221
Q ss_pred ccchhhhhhHHHHHHHHHHHHH----hcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEE
Q 001746 799 TLTSKWFGDAEKLTKALFSFAS----KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILG 874 (1018)
Q Consensus 799 eL~s~~~ge~ek~I~~lF~~A~----k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIa 874 (1018)
+ +... .-..|+.+...+. ....-|++||++|.+.. ...|.|+..++.. + ..+++|.
T Consensus 69 ~--~~~i--~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~------------~a~naLLK~LEep---p-~~t~~il 128 (313)
T PRK05564 69 N--KKSI--GVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTE------------QAQNAFLKTIEEP---P-KGVFIIL 128 (313)
T ss_pred c--CCCC--CHHHHHHHHHHHhcCcccCCceEEEEechhhcCH------------HHHHHHHHHhcCC---C-CCeEEEE
Confidence 0 0100 1122444444332 22346999999998832 2346777777642 2 3455555
Q ss_pred ecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHccCC
Q 001746 875 ATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGY 933 (1018)
Q Consensus 875 TTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeGf 933 (1018)
+|+.++.+.+.+++|+ ..+.+..|+.++...++...+. .+ +...+..++..+.|-
T Consensus 129 ~~~~~~~ll~TI~SRc-~~~~~~~~~~~~~~~~l~~~~~--~~-~~~~~~~l~~~~~g~ 183 (313)
T PRK05564 129 LCENLEQILDTIKSRC-QIYKLNRLSKEEIEKFISYKYN--DI-KEEEKKSAIAFSDGI 183 (313)
T ss_pred EeCChHhCcHHHHhhc-eeeeCCCcCHHHHHHHHHHHhc--CC-CHHHHHHHHHHcCCC
Confidence 6677899999999999 6889999999988888876543 22 233455667666663
No 179
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.03 E-value=6.2e-09 Score=119.53 Aligned_cols=183 Identities=19% Similarity=0.150 Sum_probs=118.9
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 791 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~-------------- 791 (1018)
.++++|+|.+.+++.|...+.. -+.+..+||+||+|+||+++|.++|+.+-+.
T Consensus 16 ~~~~~iiGq~~~~~~L~~~~~~-------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~ 82 (365)
T PRK07471 16 RETTALFGHAAAEAALLDAYRS-------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTS 82 (365)
T ss_pred CchhhccChHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccc
Confidence 4789999999999999988743 2345679999999999999999999987221
Q ss_pred --------------------EEEEecc--ccchhhhhh-HHHHHHHHHHHH----HhcCCeEEEecchhhhhhccCCCcc
Q 001746 792 --------------------FISITGS--TLTSKWFGD-AEKLTKALFSFA----SKLAPVIIFVDEVDSLLGARGGAFE 844 (1018)
Q Consensus 792 --------------------fi~Is~s--eL~s~~~ge-~ek~I~~lF~~A----~k~~PsIIfIDEID~L~~~r~~~~~ 844 (1018)
++.+... +-....... .-..|+.+-..+ ....+.||+|||+|.+.
T Consensus 83 l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~-------- 154 (365)
T PRK07471 83 LAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN-------- 154 (365)
T ss_pred ccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC--------
Confidence 1111110 000000000 112244443333 23457899999999873
Q ss_pred hHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCCCcccHH
Q 001746 845 HEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFN 924 (1018)
Q Consensus 845 ~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~ 924 (1018)
....+.|+..+... ....++|.+|+.++.+.+.+++|+ ..+.|+.|+.++-.+++...... ..+..+.
T Consensus 155 ----~~aanaLLK~LEep----p~~~~~IL~t~~~~~llpti~SRc-~~i~l~~l~~~~i~~~L~~~~~~---~~~~~~~ 222 (365)
T PRK07471 155 ----ANAANALLKVLEEP----PARSLFLLVSHAPARLLPTIRSRC-RKLRLRPLAPEDVIDALAAAGPD---LPDDPRA 222 (365)
T ss_pred ----HHHHHHHHHHHhcC----CCCeEEEEEECCchhchHHhhccc-eEEECCCCCHHHHHHHHHHhccc---CCHHHHH
Confidence 23346677776543 234667778888889999999999 68899999999999888775321 1222235
Q ss_pred HHHHHccCCCHHHHHHHH
Q 001746 925 ELANATEGYSGSDLKNLC 942 (1018)
Q Consensus 925 ~LA~~TeGfSgaDL~~L~ 942 (1018)
.++..+.| ++.....++
T Consensus 223 ~l~~~s~G-sp~~Al~ll 239 (365)
T PRK07471 223 ALAALAEG-SVGRALRLA 239 (365)
T ss_pred HHHHHcCC-CHHHHHHHh
Confidence 67777776 444444444
No 180
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.03 E-value=8.9e-09 Score=117.27 Aligned_cols=160 Identities=22% Similarity=0.281 Sum_probs=102.0
Q ss_pred CcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-------CcEE----
Q 001746 725 GVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAG-------ANFI---- 793 (1018)
Q Consensus 725 ~vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg-------~~fi---- 793 (1018)
...|++|.|+++.|..|...+..| ...+|||.|++|||||++|++++..+. .+|.
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~p--------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVIDP--------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccCC--------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 356999999999999997765332 225799999999999999999987762 2232
Q ss_pred -----------------------------EEeccccchhhhhhHHHHHHHHHHHHH---------hcCCeEEEecchhhh
Q 001746 794 -----------------------------SITGSTLTSKWFGDAEKLTKALFSFAS---------KLAPVIIFVDEVDSL 835 (1018)
Q Consensus 794 -----------------------------~Is~seL~s~~~ge~ek~I~~lF~~A~---------k~~PsIIfIDEID~L 835 (1018)
.+....-....+|.. -+...|.... +....+||||||+.+
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~i--D~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL 156 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTI--DIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL 156 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcc--cHHHHhhcCcccccCCeeeecCCCEEEecChHhC
Confidence 000000001111110 0111122111 112479999999998
Q ss_pred hhccCCCcchHHHHHHHHHHHhhhc---------cccccCCCcEEEEEecCCCC-CCcHHHHhccCccccccCCC-HHHH
Q 001746 836 LGARGGAFEHEATRRMRNEFMSAWD---------GLRSKESQKILILGATNRPF-DLDDAVIRRLPRRIYVDLPD-AENR 904 (1018)
Q Consensus 836 ~~~r~~~~~~e~~~~il~~LL~~Ld---------gl~~~~~~~VlVIaTTN~p~-~LD~aLlrRFd~~I~V~lPd-~eeR 904 (1018)
... +...|+..|+ |....-..++++|+|.|..+ .+.++++.||...+.+..|+ .+.+
T Consensus 157 ~~~------------~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e 224 (350)
T CHL00081 157 DDH------------LVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELR 224 (350)
T ss_pred CHH------------HHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHH
Confidence 432 2233333332 22222345788888888665 59999999999999999987 6999
Q ss_pred HHHHHHHH
Q 001746 905 MKILRIFL 912 (1018)
Q Consensus 905 ~eILk~~L 912 (1018)
.+|++...
T Consensus 225 ~~il~~~~ 232 (350)
T CHL00081 225 VKIVEQRT 232 (350)
T ss_pred HHHHHhhh
Confidence 99998754
No 181
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.02 E-value=1.9e-09 Score=101.85 Aligned_cols=126 Identities=33% Similarity=0.393 Sum_probs=82.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc---EEEEeccccchhh--------------hhhHHHHHHHHHHHHHhcCCeEE
Q 001746 765 KGILLFGPPGTGKTLLAKALATEAGAN---FISITGSTLTSKW--------------FGDAEKLTKALFSFASKLAPVII 827 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~elg~~---fi~Is~seL~s~~--------------~ge~ek~I~~lF~~A~k~~PsII 827 (1018)
..++|+||||||||++++++|..+... ++.+++....... .......+..++..++...+.||
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 579999999999999999999999765 8888776543321 12346667788999988888999
Q ss_pred EecchhhhhhccCCCcchHHHHHHHHHH-HhhhccccccCCCcEEEEEecCC-CCCCcHHHHhccCccccccCC
Q 001746 828 FVDEVDSLLGARGGAFEHEATRRMRNEF-MSAWDGLRSKESQKILILGATNR-PFDLDDAVIRRLPRRIYVDLP 899 (1018)
Q Consensus 828 fIDEID~L~~~r~~~~~~e~~~~il~~L-L~~Ldgl~~~~~~~VlVIaTTN~-p~~LD~aLlrRFd~~I~V~lP 899 (1018)
+|||++.+...... ....... ....... .......+|+++|. ....+..+..|++..+.+..+
T Consensus 83 iiDei~~~~~~~~~-------~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T smart00382 83 ILDEITSLLDAEQE-------ALLLLLEELRLLLLL--KSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147 (148)
T ss_pred EEECCcccCCHHHH-------HHHHhhhhhHHHHHH--HhcCCCEEEEEeCCCccCchhhhhhccceEEEecCC
Confidence 99999998643211 0000000 0000000 12235778888886 444555666688777776544
No 182
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.02 E-value=5.9e-09 Score=108.26 Aligned_cols=143 Identities=18% Similarity=0.200 Sum_probs=95.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCc------------------------EEEEeccccchhhhhhHHHHHHHHHHH
Q 001746 763 PCKGILLFGPPGTGKTLLAKALATEAGAN------------------------FISITGSTLTSKWFGDAEKLTKALFSF 818 (1018)
Q Consensus 763 p~~gVLL~GPPGTGKT~LArAIA~elg~~------------------------fi~Is~seL~s~~~ge~ek~I~~lF~~ 818 (1018)
.+..+||+||+|+|||++|+++++.+... +..+.... .. -....++.+...
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~~--~~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---QS--IKVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---Cc--CCHHHHHHHHHH
Confidence 44679999999999999999999987431 22222111 00 112344444444
Q ss_pred HHh----cCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHhccCccc
Q 001746 819 ASK----LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRI 894 (1018)
Q Consensus 819 A~k----~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I 894 (1018)
+.. ....||+|||+|.+... ..+.|+..++.. ....++|.+|+.+..+.+++++|+ ..+
T Consensus 88 ~~~~~~~~~~kviiide~~~l~~~------------~~~~Ll~~le~~----~~~~~~il~~~~~~~l~~~i~sr~-~~~ 150 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMNEA------------AANALLKTLEEP----PPNTLFILITPSPEKLLPTIRSRC-QVL 150 (188)
T ss_pred HccCcccCCeEEEEEechhhhCHH------------HHHHHHHHhcCC----CCCeEEEEEECChHhChHHHHhhc-EEe
Confidence 433 34569999999998421 245667666553 234556666777789999999999 588
Q ss_pred cccCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHccC
Q 001746 895 YVDLPDAENRMKILRIFLAHESLESGFQFNELANATEG 932 (1018)
Q Consensus 895 ~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeG 932 (1018)
.++.|+.++..+++... +++ +..+..++..+.|
T Consensus 151 ~~~~~~~~~~~~~l~~~----gi~-~~~~~~i~~~~~g 183 (188)
T TIGR00678 151 PFPPLSEEALLQWLIRQ----GIS-EEAAELLLALAGG 183 (188)
T ss_pred eCCCCCHHHHHHHHHHc----CCC-HHHHHHHHHHcCC
Confidence 99999999998888775 333 3346667766665
No 183
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.01 E-value=9.2e-09 Score=109.88 Aligned_cols=189 Identities=22% Similarity=0.340 Sum_probs=132.0
Q ss_pred CcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc
Q 001746 725 GVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLT 801 (1018)
Q Consensus 725 ~vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~ 801 (1018)
.+.+.+|.|++.+++.|.+-. +.|..+ .|..+|||+|..||||++|++|+.++. |..+|.|+-.++.
T Consensus 56 ~i~L~~l~Gvd~qk~~L~~NT-------~~F~~G---~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~ 125 (287)
T COG2607 56 PIDLADLVGVDRQKEALVRNT-------EQFAEG---LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLA 125 (287)
T ss_pred CcCHHHHhCchHHHHHHHHHH-------HHHHcC---CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHh
Confidence 478999999999999996654 345443 366889999999999999999999887 6678888776653
Q ss_pred hhhhhhHHHHHHHHHHHHHhc-CCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCC
Q 001746 802 SKWFGDAEKLTKALFSFASKL-APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPF 880 (1018)
Q Consensus 802 s~~~ge~ek~I~~lF~~A~k~-~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~ 880 (1018)
. +-.+++..+.. ..-|||+||+- + . . . ..-...|-..|+|--.....+|+|.||+|+..
T Consensus 126 ~---------Lp~l~~~Lr~~~~kFIlFcDDLS-F--e---~--g---d~~yK~LKs~LeG~ve~rP~NVl~YATSNRRH 185 (287)
T COG2607 126 T---------LPDLVELLRARPEKFILFCDDLS-F--E---E--G---DDAYKALKSALEGGVEGRPANVLFYATSNRRH 185 (287)
T ss_pred h---------HHHHHHHHhcCCceEEEEecCCC-C--C---C--C---chHHHHHHHHhcCCcccCCCeEEEEEecCCcc
Confidence 2 23344444332 34799999972 1 0 0 1 11123455666776555667899999999876
Q ss_pred CCcH----------------------HHHhccCccccccCCCHHHHHHHHHHHHhccCCCC-c--ccHHH--HHHHccCC
Q 001746 881 DLDD----------------------AVIRRLPRRIYVDLPDAENRMKILRIFLAHESLES-G--FQFNE--LANATEGY 933 (1018)
Q Consensus 881 ~LD~----------------------aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~~-d--vdl~~--LA~~TeGf 933 (1018)
.|++ .+-.||...+.|..++.++..+|+..++++.+++- + .+.+. .|..-.|-
T Consensus 186 Ll~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~R 265 (287)
T COG2607 186 LLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGGR 265 (287)
T ss_pred cccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 6552 22238999999999999999999999999888763 2 22222 34444567
Q ss_pred CHHHHHHHHH
Q 001746 934 SGSDLKNLCI 943 (1018)
Q Consensus 934 SgaDL~~L~~ 943 (1018)
||+--.+.++
T Consensus 266 SGR~A~QF~~ 275 (287)
T COG2607 266 SGRVAWQFIR 275 (287)
T ss_pred ccHhHHHHHH
Confidence 7775444443
No 184
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.98 E-value=4.1e-09 Score=125.72 Aligned_cols=168 Identities=21% Similarity=0.274 Sum_probs=111.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhhhhHHHHHHHHHHH-H---HhcCCeEEEecchhhhhhcc
Q 001746 764 CKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSF-A---SKLAPVIIFVDEVDSLLGAR 839 (1018)
Q Consensus 764 ~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~s~~~ge~ek~I~~lF~~-A---~k~~PsIIfIDEID~L~~~r 839 (1018)
.+-+||+||||-|||+||+.||+++|+.++.|++++--+. ......|..+... . ....|.+|+|||||--.
T Consensus 326 kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~--~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~--- 400 (877)
T KOG1969|consen 326 KKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTA--PMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP--- 400 (877)
T ss_pred cceEEeecCCCCChhHHHHHHHHhcCceEEEecccccccH--HHHHHHHHHHHhhccccccCCCcceEEEecccCCc---
Confidence 3558899999999999999999999999999999874332 1112222222211 1 23579999999998521
Q ss_pred CCCcchHHHHHHHHHHHhhhc-------cccccCC----------CcEEEEEecCCCCCCcHHHHh--ccCccccccCCC
Q 001746 840 GGAFEHEATRRMRNEFMSAWD-------GLRSKES----------QKILILGATNRPFDLDDAVIR--RLPRRIYVDLPD 900 (1018)
Q Consensus 840 ~~~~~~e~~~~il~~LL~~Ld-------gl~~~~~----------~~VlVIaTTN~p~~LD~aLlr--RFd~~I~V~lPd 900 (1018)
+..+..++..+. |-..... -.--|||.||... -|+|+. -|...|.|..|.
T Consensus 401 ---------~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaLR~Lr~~A~ii~f~~p~ 469 (877)
T KOG1969|consen 401 ---------RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--APALRPLRPFAEIIAFVPPS 469 (877)
T ss_pred ---------HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCcc--chhhhhcccceEEEEecCCC
Confidence 222333333333 1110000 0123788888754 355544 688889999999
Q ss_pred HHHHHHHHHHHHhccCCCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHH
Q 001746 901 AENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPV 950 (1018)
Q Consensus 901 ~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeGfSgaDL~~L~~~Aa~~Ai 950 (1018)
.....+-|+.++..+++. +|...|+..++ ++..||+..++.-.+.+.
T Consensus 470 ~s~Lv~RL~~IC~rE~mr--~d~~aL~~L~e-l~~~DIRsCINtLQfLa~ 516 (877)
T KOG1969|consen 470 QSRLVERLNEICHRENMR--ADSKALNALCE-LTQNDIRSCINTLQFLAS 516 (877)
T ss_pred hhHHHHHHHHHHhhhcCC--CCHHHHHHHHH-HhcchHHHHHHHHHHHHH
Confidence 999889999999888874 55666777666 667899988877655544
No 185
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.94 E-value=2e-08 Score=113.17 Aligned_cols=183 Identities=15% Similarity=0.169 Sum_probs=120.7
Q ss_pred ccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---------------
Q 001746 727 RFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN--------------- 791 (1018)
Q Consensus 727 tfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~--------------- 791 (1018)
.|++|.|.+.+++.|...+.. .+.+..+||+||+|+||+.+|.++|+.+-..
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-------------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~ 68 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-------------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGN 68 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-------------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCC
Confidence 589999999999999998844 1334679999999999999999999987221
Q ss_pred ---EEEEeccccc-hh--------hhh-------h-HHHHHHHHHHHHHh----cCCeEEEecchhhhhhccCCCcchHH
Q 001746 792 ---FISITGSTLT-SK--------WFG-------D-AEKLTKALFSFASK----LAPVIIFVDEVDSLLGARGGAFEHEA 847 (1018)
Q Consensus 792 ---fi~Is~seL~-s~--------~~g-------e-~ek~I~~lF~~A~k----~~PsIIfIDEID~L~~~r~~~~~~e~ 847 (1018)
++.+.+.... ++ ..| . .-..++.+-..+.. ....|++||++|.+..
T Consensus 69 hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~---------- 138 (314)
T PRK07399 69 HPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE---------- 138 (314)
T ss_pred CCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH----------
Confidence 1222221000 00 000 0 01234555444432 2346999999999832
Q ss_pred HHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCCCcccHHHHH
Q 001746 848 TRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELA 927 (1018)
Q Consensus 848 ~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA 927 (1018)
...|.|+..|... + +.++|.+|+.++.|-+.+++|+ ..+.|+.|+.++..++|......... +.++..++
T Consensus 139 --~aaNaLLK~LEEP---p--~~~fILi~~~~~~Ll~TI~SRc-q~i~f~~l~~~~~~~~L~~~~~~~~~--~~~~~~l~ 208 (314)
T PRK07399 139 --AAANALLKTLEEP---G--NGTLILIAPSPESLLPTIVSRC-QIIPFYRLSDEQLEQVLKRLGDEEIL--NINFPELL 208 (314)
T ss_pred --HHHHHHHHHHhCC---C--CCeEEEEECChHhCcHHHHhhc-eEEecCCCCHHHHHHHHHHhhccccc--hhHHHHHH
Confidence 2346777777553 2 2355667778899999999999 78899999999999999876432221 22357788
Q ss_pred HHccCCCHHHHHHHHH
Q 001746 928 NATEGYSGSDLKNLCI 943 (1018)
Q Consensus 928 ~~TeGfSgaDL~~L~~ 943 (1018)
..+.| +++...+++.
T Consensus 209 ~~a~G-s~~~al~~l~ 223 (314)
T PRK07399 209 ALAQG-SPGAAIANIE 223 (314)
T ss_pred HHcCC-CHHHHHHHHH
Confidence 87877 5544444443
No 186
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=7.5e-09 Score=126.63 Aligned_cols=164 Identities=26% Similarity=0.390 Sum_probs=123.1
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA----------GANFISI 795 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~el----------g~~fi~I 795 (1018)
..+|-++|.++-+..+.+.+.- +..++-+|.|+||+|||.++..+|... +..++.+
T Consensus 167 gklDPvIGRd~EI~r~iqIL~R--------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sL 232 (786)
T COG0542 167 GKLDPVIGRDEEIRRTIQILSR--------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSL 232 (786)
T ss_pred CCCCCCcChHHHHHHHHHHHhc--------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEe
Confidence 3466788888877777665522 122456889999999999999999876 4668889
Q ss_pred eccccch--hhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcc-hHHHHHHHHHHHhhhccccccCCCcEEE
Q 001746 796 TGSTLTS--KWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFE-HEATRRMRNEFMSAWDGLRSKESQKILI 872 (1018)
Q Consensus 796 s~seL~s--~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~-~e~~~~il~~LL~~Ldgl~~~~~~~VlV 872 (1018)
++..+.. +|-|+.|..++.+..+..+..+.|||||||+.+.+.....++ -.+. |-|.-.| ....+-+
T Consensus 233 D~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAa----NiLKPaL------ARGeL~~ 302 (786)
T COG0542 233 DLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAA----NLLKPAL------ARGELRC 302 (786)
T ss_pred cHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchh----hhhHHHH------hcCCeEE
Confidence 9888854 688999999999999999988999999999999987543221 1122 2222222 2235778
Q ss_pred EEecCC-----CCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhc
Q 001746 873 LGATNR-----PFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAH 914 (1018)
Q Consensus 873 IaTTN~-----p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~ 914 (1018)
||+|.. .-.=|+||-||| ..|.|..|+.++-..||+-+-..
T Consensus 303 IGATT~~EYRk~iEKD~AL~RRF-Q~V~V~EPs~e~ti~ILrGlk~~ 348 (786)
T COG0542 303 IGATTLDEYRKYIEKDAALERRF-QKVLVDEPSVEDTIAILRGLKER 348 (786)
T ss_pred EEeccHHHHHHHhhhchHHHhcC-ceeeCCCCCHHHHHHHHHHHHHH
Confidence 888743 344788999999 67899999999999999977654
No 187
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.94 E-value=3e-09 Score=102.23 Aligned_cols=81 Identities=9% Similarity=0.237 Sum_probs=61.7
Q ss_pred HHHHHHHHHhhCC-CeEEEEcCchhhhhhc--cCcchHHHHHHHHHHHHhcCCC---CEEEEeeccCCCCCccccccccc
Q 001746 472 AMEALCEVLHSTQ-PLIVYFPDSSLWLSRA--VPRCNRKEFVRKVEEMFDQLSG---PVVLICGQNKNETGPKEKEKFTM 545 (1018)
Q Consensus 472 ~i~~L~e~~~~~~-p~Iiff~did~~~~~s--~~~~~~~~~~s~~~~~l~~l~g---~v~vi~~~~~~~~~~~~~~~~~~ 545 (1018)
.+..+|+.+++.. |.||||||+|.+.... ........+++.|...|+.... +++||
T Consensus 45 ~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI------------------ 106 (132)
T PF00004_consen 45 KIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVI------------------ 106 (132)
T ss_dssp HHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEE------------------
T ss_pred ccccccccccccccceeeeeccchhcccccccccccccccccceeeecccccccccccceeE------------------
Confidence 6677788888877 9999999999986554 2233445567888888888875 46666
Q ss_pred cccccccccCCCCchhhhhcccccCCCcchHHHH-hccccEEEEcC
Q 001746 546 ILPNFGRLAKLPLPLQRLTEGLKATKRSDDNEIY-NLFTNVLSIHP 590 (1018)
Q Consensus 546 ~~~~~~~~~~~~~~~~~LvIGmTnR~d~iD~aL~-rrFe~~ieI~L 590 (1018)
++||+++.|+++|+ +||+..|+|+|
T Consensus 107 --------------------~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 107 --------------------ATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp --------------------EEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred --------------------EeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 55666788999999 89999999986
No 188
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.93 E-value=3.8e-09 Score=103.96 Aligned_cols=112 Identities=28% Similarity=0.413 Sum_probs=69.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch--hhhhhHH------HHHHHHHHHHHhcCCeEEEecchhhhhh
Q 001746 766 GILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS--KWFGDAE------KLTKALFSFASKLAPVIIFVDEVDSLLG 837 (1018)
Q Consensus 766 gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~s--~~~ge~e------k~I~~lF~~A~k~~PsIIfIDEID~L~~ 837 (1018)
+|||+||||||||+||+.+|+.++.+++.+.++.... +..|... ......+..+.+ .+.|+|||||+..-
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~-~~~il~lDEin~a~- 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR-KGGILVLDEINRAP- 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH-EEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc-ceeEEEECCcccCC-
Confidence 5899999999999999999999999998888765321 1111100 000000000111 56899999999752
Q ss_pred ccCCCcchHHHHHHHHHHHhhhccccc----------cCCC-----cEEEEEecCCCC----CCcHHHHhcc
Q 001746 838 ARGGAFEHEATRRMRNEFMSAWDGLRS----------KESQ-----KILILGATNRPF----DLDDAVIRRL 890 (1018)
Q Consensus 838 ~r~~~~~~e~~~~il~~LL~~Ldgl~~----------~~~~-----~VlVIaTTN~p~----~LD~aLlrRF 890 (1018)
..++..|+..++.-.. .... .+.+|+|+|... .+++++++||
T Consensus 79 -----------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 79 -----------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp -----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred -----------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 3344455544443211 0111 389999999998 7999999998
No 189
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.92 E-value=2.7e-08 Score=113.13 Aligned_cols=157 Identities=23% Similarity=0.336 Sum_probs=97.6
Q ss_pred ccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------CCcEE------
Q 001746 727 RFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA-------GANFI------ 793 (1018)
Q Consensus 727 tfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~el-------g~~fi------ 793 (1018)
-|..|.|.++++..|.-.+..| ...++||.|+||+|||+|+++++.-+ +.++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~--------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~ 67 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP--------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDP 67 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC--------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCc
Confidence 3788999999998885544221 12569999999999999999999876 22221
Q ss_pred ---EEec-------------------cccch-----hhhhhH--HHHH--------HHHHHHHHhcCCeEEEecchhhhh
Q 001746 794 ---SITG-------------------STLTS-----KWFGDA--EKLT--------KALFSFASKLAPVIIFVDEVDSLL 836 (1018)
Q Consensus 794 ---~Is~-------------------seL~s-----~~~ge~--ek~I--------~~lF~~A~k~~PsIIfIDEID~L~ 836 (1018)
..+| .++-. ...|.. ++.+ ..++. +....+||||||+.+.
T Consensus 68 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~---~A~~GvL~lDEi~~L~ 144 (337)
T TIGR02030 68 EMMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLA---RANRGILYIDEVNLLE 144 (337)
T ss_pred cccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcce---eccCCEEEecChHhCC
Confidence 0000 01100 122211 1110 01111 1234799999999973
Q ss_pred hccCCCcchHHHHHHHHHHHhhhc---------cccccCCCcEEEEEecCCCC-CCcHHHHhccCccccccCCCH-HHHH
Q 001746 837 GARGGAFEHEATRRMRNEFMSAWD---------GLRSKESQKILILGATNRPF-DLDDAVIRRLPRRIYVDLPDA-ENRM 905 (1018)
Q Consensus 837 ~~r~~~~~~e~~~~il~~LL~~Ld---------gl~~~~~~~VlVIaTTN~p~-~LD~aLlrRFd~~I~V~lPd~-eeR~ 905 (1018)
. .+...|+..|+ |....-..++++|+|+|..+ .+.++++.||...+.++.|.. ++|.
T Consensus 145 ~------------~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~ 212 (337)
T TIGR02030 145 D------------HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRV 212 (337)
T ss_pred H------------HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHH
Confidence 2 22333333332 22222235788999888655 599999999999999998865 8899
Q ss_pred HHHHHHH
Q 001746 906 KILRIFL 912 (1018)
Q Consensus 906 eILk~~L 912 (1018)
+|++...
T Consensus 213 eIL~~~~ 219 (337)
T TIGR02030 213 EIVERRT 219 (337)
T ss_pred HHHHhhh
Confidence 9998743
No 190
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.92 E-value=7.9e-08 Score=104.58 Aligned_cols=191 Identities=18% Similarity=0.179 Sum_probs=114.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC-cEE--EEeccc-----cchh---hhh-----h-HHHHHHHHH----HHHHhcC
Q 001746 765 KGILLFGPPGTGKTLLAKALATEAGA-NFI--SITGST-----LTSK---WFG-----D-AEKLTKALF----SFASKLA 823 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~elg~-~fi--~Is~se-----L~s~---~~g-----e-~ek~I~~lF----~~A~k~~ 823 (1018)
..++|+||+|+|||++++.+++++.. .++ .+.... +... ..| . ....+..+. .......
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 34899999999999999999998752 222 111111 1100 011 0 111112221 2233456
Q ss_pred CeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCC---CC----cHHHHhccCccccc
Q 001746 824 PVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPF---DL----DDAVIRRLPRRIYV 896 (1018)
Q Consensus 824 PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~---~L----D~aLlrRFd~~I~V 896 (1018)
+.||+|||++.+... . ...+..+.. ........+.|+.+. .++ .+ ...+.+|+...+.+
T Consensus 124 ~~vliiDe~~~l~~~--------~-~~~l~~l~~----~~~~~~~~~~vvl~g-~~~~~~~l~~~~~~~l~~r~~~~~~l 189 (269)
T TIGR03015 124 RALLVVDEAQNLTPE--------L-LEELRMLSN----FQTDNAKLLQIFLVG-QPEFRETLQSPQLQQLRQRIIASCHL 189 (269)
T ss_pred CeEEEEECcccCCHH--------H-HHHHHHHhC----cccCCCCeEEEEEcC-CHHHHHHHcCchhHHHHhheeeeeeC
Confidence 789999999987321 1 111112211 111112223333332 222 11 12466688778899
Q ss_pred cCCCHHHHHHHHHHHHhccCC-----CCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccC
Q 001746 897 DLPDAENRMKILRIFLAHESL-----ESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKRGKNDAAPVLRP 971 (1018)
Q Consensus 897 ~lPd~eeR~eILk~~L~~~~l-----~~dvdl~~LA~~TeGfSgaDL~~L~~~Aa~~Airr~~~~~~~~~~~~~~~~~rp 971 (1018)
+..+.++..+++...+...+. -.+..++.|++.+.|.. +.|..+|..|...|..+- ...
T Consensus 190 ~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p-~~i~~l~~~~~~~a~~~~---------------~~~ 253 (269)
T TIGR03015 190 GPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP-RLINILCDRLLLSAFLEE---------------KRE 253 (269)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc-cHHHHHHHHHHHHHHHcC---------------CCC
Confidence 999999999999988864321 23456888999999975 559999998887776531 146
Q ss_pred CCHHHHHHHHHhhC
Q 001746 972 LKLEDFIQSKAKVG 985 (1018)
Q Consensus 972 LT~eDF~~Al~kv~ 985 (1018)
|+.+++..++..++
T Consensus 254 i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 254 IGGEEVREVIAEID 267 (269)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999999998765
No 191
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.91 E-value=1.7e-08 Score=123.62 Aligned_cols=159 Identities=26% Similarity=0.372 Sum_probs=102.1
Q ss_pred cccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------------------
Q 001746 728 FDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA------------------- 788 (1018)
Q Consensus 728 fdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~el------------------- 788 (1018)
|.+|.|.+.++..|.-....+ ...+|||+|+||||||++|++|+..+
T Consensus 3 f~~ivGq~~~~~al~~~av~~--------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVDP--------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred cchhcChHHHHHHHHHHhhCC--------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 789999999998886554221 11469999999999999999999887
Q ss_pred ----------------CCcEEEEeccccchhhhhhH--HHHHH---HHHH--HHHhcCCeEEEecchhhhhhccCCCcch
Q 001746 789 ----------------GANFISITGSTLTSKWFGDA--EKLTK---ALFS--FASKLAPVIIFVDEVDSLLGARGGAFEH 845 (1018)
Q Consensus 789 ----------------g~~fi~Is~seL~s~~~ge~--ek~I~---~lF~--~A~k~~PsIIfIDEID~L~~~r~~~~~~ 845 (1018)
..+|+.+.+.......+|.. +..+. ..|. ........|||||||+.+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~-------- 140 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDD-------- 140 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCH--------
Confidence 25677665544333333321 11111 0000 00011236999999999842
Q ss_pred HHHHHHHHHHHhhhcc---------ccccCCCcEEEEEecCCC-CCCcHHHHhccCccccccCC-CHHHHHHHHHHHH
Q 001746 846 EATRRMRNEFMSAWDG---------LRSKESQKILILGATNRP-FDLDDAVIRRLPRRIYVDLP-DAENRMKILRIFL 912 (1018)
Q Consensus 846 e~~~~il~~LL~~Ldg---------l~~~~~~~VlVIaTTN~p-~~LD~aLlrRFd~~I~V~lP-d~eeR~eILk~~L 912 (1018)
.+.+.|+..|+. .......+++||+|+|.. ..+.++|+.||+..+.++.| +.+++.++++..+
T Consensus 141 ----~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~ 214 (633)
T TIGR02442 141 ----HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRL 214 (633)
T ss_pred ----HHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHH
Confidence 233445544432 111223468999998854 35889999999988888766 4678888887644
No 192
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=2.9e-08 Score=110.14 Aligned_cols=178 Identities=26% Similarity=0.387 Sum_probs=122.0
Q ss_pred ccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch-hhhh---
Q 001746 731 IGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS-KWFG--- 806 (1018)
Q Consensus 731 IgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~s-~~~g--- 806 (1018)
|+|+++.|..+.-.+...+++.++-....---.|++||..||.|+|||-+|+.+|+-.++||+.+.+..+.. .|+|
T Consensus 17 IIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKfTEVGYVGrDV 96 (444)
T COG1220 17 IIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFTEVGYVGRDV 96 (444)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeeeeecccccccH
Confidence 688999999888777776666555444333345799999999999999999999999999998875543311 0111
Q ss_pred --------------------------------------------------------------------------------
Q 001746 807 -------------------------------------------------------------------------------- 806 (1018)
Q Consensus 807 -------------------------------------------------------------------------------- 806 (1018)
T Consensus 97 esivRDLve~av~lvke~~~~~vk~~ae~~aeeRild~Lvp~~~~~~g~~~~~~~~~~~r~~~rkkLr~GeLdd~eIeie 176 (444)
T COG1220 97 ESIIRDLVEIAVKLVREEKIEKVKDKAEELAEERILDALVPPAKNFWGQSENKQESSATREKFRKKLREGELDDKEIEIE 176 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcCcccccchHHHHHHHHHHHcCCCCccEEEEE
Confidence
Q ss_pred ------------------hHHHHHHHHHHHHHhc---------------------------------------CCeEEEe
Q 001746 807 ------------------DAEKLTKALFSFASKL---------------------------------------APVIIFV 829 (1018)
Q Consensus 807 ------------------e~ek~I~~lF~~A~k~---------------------------------------~PsIIfI 829 (1018)
+....+..+|..+... +-.||||
T Consensus 177 v~~~~~~~~~i~~~pgme~~~~~l~~m~~~~~~~kkkkrk~~Vk~A~~~L~~eea~KLid~e~i~~eAi~~aE~~GIvFI 256 (444)
T COG1220 177 VADKGPPGFEIMGPPGMEEMTNNLQDMFGNLGGKKKKKRKLKVKEAKKLLIEEEADKLIDQEEIKQEAIDAAEQNGIVFI 256 (444)
T ss_pred EeccCCCccccCCCCcHHHHHHHHHHHHHHhcCCCcceeeeeHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcCeEEE
Confidence 0111122233222100 2369999
Q ss_pred cchhhhhhccCCCcchHHHH-HHHHHHHhhhcccc------ccCCCcEEEEEec----CCCCCCcHHHHhccCccccccC
Q 001746 830 DEVDSLLGARGGAFEHEATR-RMRNEFMSAWDGLR------SKESQKILILGAT----NRPFDLDDAVIRRLPRRIYVDL 898 (1018)
Q Consensus 830 DEID~L~~~r~~~~~~e~~~-~il~~LL~~Ldgl~------~~~~~~VlVIaTT----N~p~~LD~aLlrRFd~~I~V~l 898 (1018)
||||.++.....+. ...++ .+...+|-++.|-. +...+.+++||+. ..|.+|-|.|.-||+.++++..
T Consensus 257 DEIDKIa~~~~~g~-~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPIRVEL~~ 335 (444)
T COG1220 257 DEIDKIAKRGGSGG-PDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPIRVELDA 335 (444)
T ss_pred ehhhHHHhcCCCCC-CCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCceEEEccc
Confidence 99999987664322 13333 34556666666532 1245678999885 7899999999999999999999
Q ss_pred CCHHHHHHHHH
Q 001746 899 PDAENRMKILR 909 (1018)
Q Consensus 899 Pd~eeR~eILk 909 (1018)
.+.+.-..||.
T Consensus 336 Lt~~Df~rILt 346 (444)
T COG1220 336 LTKEDFERILT 346 (444)
T ss_pred CCHHHHHHHHc
Confidence 99988777764
No 193
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.90 E-value=4e-08 Score=111.38 Aligned_cols=148 Identities=20% Similarity=0.240 Sum_probs=98.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCc------------------------EEEEeccccchhhhhhHHHHHHHHHHH
Q 001746 763 PCKGILLFGPPGTGKTLLAKALATEAGAN------------------------FISITGSTLTSKWFGDAEKLTKALFSF 818 (1018)
Q Consensus 763 p~~gVLL~GPPGTGKT~LArAIA~elg~~------------------------fi~Is~seL~s~~~ge~ek~I~~lF~~ 818 (1018)
.+..+||+||+|+|||++|+++|+.+.+. ++.+.+..- ++. -.-..|+.+...
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~~--i~id~iR~l~~~ 97 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DKT--IKVDQVRELVSF 97 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CCC--CCHHHHHHHHHH
Confidence 45789999999999999999999988431 233322110 000 012334444443
Q ss_pred HH----hcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHhccCccc
Q 001746 819 AS----KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRI 894 (1018)
Q Consensus 819 A~----k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I 894 (1018)
+. ....-|++||++|.+.. ...|.|+..|+.- ...+++|.+|+.++.|.+.+++|+ ..+
T Consensus 98 ~~~~~~~~~~kv~iI~~a~~m~~------------~aaNaLLK~LEEP----p~~~~fiL~t~~~~~ll~TI~SRc-~~~ 160 (328)
T PRK05707 98 VVQTAQLGGRKVVLIEPAEAMNR------------NAANALLKSLEEP----SGDTVLLLISHQPSRLLPTIKSRC-QQQ 160 (328)
T ss_pred HhhccccCCCeEEEECChhhCCH------------HHHHHHHHHHhCC----CCCeEEEEEECChhhCcHHHHhhc-eee
Confidence 33 33456999999999842 3356777777653 246888889999999999999999 568
Q ss_pred cccCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHccCC
Q 001746 895 YVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGY 933 (1018)
Q Consensus 895 ~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeGf 933 (1018)
.|++|+.++..++|...... ..+.+...++..+.|-
T Consensus 161 ~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~Gs 196 (328)
T PRK05707 161 ACPLPSNEESLQWLQQALPE---SDERERIELLTLAGGS 196 (328)
T ss_pred eCCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCCC
Confidence 99999999888888754311 2233345566666663
No 194
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.89 E-value=1.4e-08 Score=118.37 Aligned_cols=143 Identities=22% Similarity=0.282 Sum_probs=85.0
Q ss_pred cccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-------cEEEEecc--
Q 001746 728 FDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA-------NFISITGS-- 798 (1018)
Q Consensus 728 fdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~-------~fi~Is~s-- 798 (1018)
++++.+.+...+.+...+. ..++++|+||||||||++|+++|..+.. .++.+...
T Consensus 174 l~d~~i~e~~le~l~~~L~----------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsyS 237 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT----------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYS 237 (459)
T ss_pred hhcccCCHHHHHHHHHHHh----------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeeccccc
Confidence 4455556666666654431 1357999999999999999999998842 12333322
Q ss_pred --ccchhhhhh--H----HHHHHHHHHHHHhc--CCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccc------
Q 001746 799 --TLTSKWFGD--A----EKLTKALFSFASKL--APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGL------ 862 (1018)
Q Consensus 799 --eL~s~~~ge--~----ek~I~~lF~~A~k~--~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl------ 862 (1018)
+++..+.-. . ...+..+...|... .|.|||||||++--. .++..+++.+++.-
T Consensus 238 YeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani-----------~kiFGel~~lLE~~~rg~~~ 306 (459)
T PRK11331 238 YEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANL-----------SKVFGEVMMLMEHDKRGENW 306 (459)
T ss_pred HHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCH-----------HHhhhhhhhhcccccccccc
Confidence 222111000 0 11233444556543 579999999987531 22333444433310
Q ss_pred ------------cccCCCcEEEEEecCCCC----CCcHHHHhccCccccccC
Q 001746 863 ------------RSKESQKILILGATNRPF----DLDDAVIRRLPRRIYVDL 898 (1018)
Q Consensus 863 ------------~~~~~~~VlVIaTTN~p~----~LD~aLlrRFd~~I~V~l 898 (1018)
.-....++.||||+|..+ .+|.|++|||. .|.+.+
T Consensus 307 ~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF~-fi~i~p 357 (459)
T PRK11331 307 SVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFS-FIDIEP 357 (459)
T ss_pred ceeeeccccccccccCCCCeEEEEecCccccchhhccHHHHhhhh-eEEecC
Confidence 001235799999999987 69999999994 455543
No 195
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.87 E-value=1.6e-07 Score=105.15 Aligned_cols=93 Identities=20% Similarity=0.134 Sum_probs=65.9
Q ss_pred CCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHH
Q 001746 878 RPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEE 956 (1018)
Q Consensus 878 ~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeGfSgaDL~~L~~~Aa~~Airr~~~~ 956 (1018)
.|+-++..|+.|. ..|...+.+.++..+|++.......+. ++..++.|+....--|-+--.+|+.-|...|-++-
T Consensus 341 sPhGIP~DlLDRl-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg--- 416 (450)
T COG1224 341 SPHGIPLDLLDRL-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRG--- 416 (450)
T ss_pred CCCCCCHhhhhhe-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhC---
Confidence 4666889999998 677788889999999999998877665 44457777776665555555566555555444331
Q ss_pred HHhcCCCCCCCCccCCCHHHHHHHHHhhCC
Q 001746 957 ERKRGKNDAAPVLRPLKLEDFIQSKAKVGP 986 (1018)
Q Consensus 957 ~~~~~~~~~~~~~rpLT~eDF~~Al~kv~P 986 (1018)
...+..+|+..|..-+..
T Consensus 417 ------------~~~V~~~dVe~a~~lF~D 434 (450)
T COG1224 417 ------------SKRVEVEDVERAKELFLD 434 (450)
T ss_pred ------------CCeeehhHHHHHHHHHhh
Confidence 135888999988776643
No 196
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.86 E-value=2.5e-08 Score=110.90 Aligned_cols=149 Identities=24% Similarity=0.326 Sum_probs=98.1
Q ss_pred cccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC--------------------
Q 001746 730 DIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAG-------------------- 789 (1018)
Q Consensus 730 DIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg-------------------- 789 (1018)
++.+.+.+...+...+... + +.+..+||+||||+|||++|.++|+++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~---------~---~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~ 69 (325)
T COG0470 2 ELVPWQEAVKRLLVQALES---------G---RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIP 69 (325)
T ss_pred CcccchhHHHHHHHHHHhc---------C---CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHh
Confidence 4555666666666665321 1 2234699999999999999999999986
Q ss_pred ----CcEEEEeccccchhhhhhHHHHHHHHHHHHHh----cCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhcc
Q 001746 790 ----ANFISITGSTLTSKWFGDAEKLTKALFSFASK----LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDG 861 (1018)
Q Consensus 790 ----~~fi~Is~seL~s~~~ge~ek~I~~lF~~A~k----~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldg 861 (1018)
-.++.+++++....- -....++.+-..... ...-||+|||+|.+.. ...+.++..+..
T Consensus 70 ~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~------------~A~nallk~lEe 135 (325)
T COG0470 70 AGNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE------------DAANALLKTLEE 135 (325)
T ss_pred hcCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH------------HHHHHHHHHhcc
Confidence 367777776654321 122333333333222 3457999999999953 224555555543
Q ss_pred ccccCCCcEEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHH
Q 001746 862 LRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILR 909 (1018)
Q Consensus 862 l~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk 909 (1018)
+..+..+|.+||.+..+-+.+++|+ ..+.|++|+...+....+
T Consensus 136 ----p~~~~~~il~~n~~~~il~tI~SRc-~~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 136 ----PPKNTRFILITNDPSKILPTIRSRC-QRIRFKPPSRLEAIAWLE 178 (325)
T ss_pred ----CCCCeEEEEEcCChhhccchhhhcc-eeeecCCchHHHHHHHhh
Confidence 2446788889999999999999998 567777765555444443
No 197
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.85 E-value=6.9e-09 Score=117.35 Aligned_cols=135 Identities=31% Similarity=0.509 Sum_probs=86.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch--hhhhhHHHHHH----HHHHHHHh--cCC--eEEEecchhh
Q 001746 765 KGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS--KWFGDAEKLTK----ALFSFASK--LAP--VIIFVDEVDS 834 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~s--~~~ge~ek~I~----~lF~~A~k--~~P--sIIfIDEID~ 834 (1018)
.++||.||||||||+||+++|..++.+|+.+.+...+. +..|...-... ..|..... ... +|+|+|||++
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInr 123 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINR 123 (329)
T ss_pred CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEecccc
Confidence 46999999999999999999999999999998864322 22222111100 00100000 001 4999999988
Q ss_pred hhhccCCCcchHHHHHHHHHHHhhhcc-------cc-ccCCCcEEEEEecC-----CCCCCcHHHHhccCccccccCC-C
Q 001746 835 LLGARGGAFEHEATRRMRNEFMSAWDG-------LR-SKESQKILILGATN-----RPFDLDDAVIRRLPRRIYVDLP-D 900 (1018)
Q Consensus 835 L~~~r~~~~~~e~~~~il~~LL~~Ldg-------l~-~~~~~~VlVIaTTN-----~p~~LD~aLlrRFd~~I~V~lP-d 900 (1018)
.. ..+.+.|+..|+. .. -.-..+++||+|+| ....|++++++||...+.++.| .
T Consensus 124 a~------------p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~ 191 (329)
T COG0714 124 AP------------PEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDS 191 (329)
T ss_pred CC------------HHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHhhEEEEEecCCCCc
Confidence 53 2233444444432 22 23346788999999 4455899999999888999999 5
Q ss_pred HHHHHHHHHHH
Q 001746 901 AENRMKILRIF 911 (1018)
Q Consensus 901 ~eeR~eILk~~ 911 (1018)
.++...++...
T Consensus 192 ~~e~~~i~~~~ 202 (329)
T COG0714 192 EEEERIILARV 202 (329)
T ss_pred hHHHHHHHHhC
Confidence 55555555443
No 198
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.83 E-value=1.4e-08 Score=105.01 Aligned_cols=115 Identities=24% Similarity=0.295 Sum_probs=76.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCC----cEEEEeccccchhhhhhHHHHHHHHHHHH----HhcCCeEEEecchhh
Q 001746 763 PCKGILLFGPPGTGKTLLAKALATEAGA----NFISITGSTLTSKWFGDAEKLTKALFSFA----SKLAPVIIFVDEVDS 834 (1018)
Q Consensus 763 p~~gVLL~GPPGTGKT~LArAIA~elg~----~fi~Is~seL~s~~~ge~ek~I~~lF~~A----~k~~PsIIfIDEID~ 834 (1018)
|..++||.||+|+|||.||+++|..+.. +++.++++++... ++....+..+...+ ......||||||||.
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 5567999999999999999999999996 9999999988761 11112222222211 111224999999999
Q ss_pred hhhccCCCcchHHHHHHHHHHHhhhccccc-------cCCCcEEEEEecCCCC
Q 001746 835 LLGARGGAFEHEATRRMRNEFMSAWDGLRS-------KESQKILILGATNRPF 880 (1018)
Q Consensus 835 L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~-------~~~~~VlVIaTTN~p~ 880 (1018)
.... .+.........+.+.||..|++-.- ....++++|+|+|--.
T Consensus 80 a~~~-~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 80 AHPS-NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp CSHT-TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred cccc-ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 8765 2222344455778888888874321 2335789999998643
No 199
>PRK04132 replication factor C small subunit; Provisional
Probab=98.82 E-value=4.8e-08 Score=121.61 Aligned_cols=160 Identities=22% Similarity=0.206 Sum_probs=117.1
Q ss_pred CCceEEEEc--CCCChHHHHHHHHHHHh-----CCcEEEEeccccchhhhhhHHHHHHHHHHHHHhcC------CeEEEe
Q 001746 763 PCKGILLFG--PPGTGKTLLAKALATEA-----GANFISITGSTLTSKWFGDAEKLTKALFSFASKLA------PVIIFV 829 (1018)
Q Consensus 763 p~~gVLL~G--PPGTGKT~LArAIA~el-----g~~fi~Is~seL~s~~~ge~ek~I~~lF~~A~k~~------PsIIfI 829 (1018)
|.-.-+..| |++.|||++|+|+|+++ +.+++.+++++..+. ..++.+...+.... ..||||
T Consensus 563 ~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgi------d~IR~iIk~~a~~~~~~~~~~KVvII 636 (846)
T PRK04132 563 PGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGI------NVIREKVKEFARTKPIGGASFKIIFL 636 (846)
T ss_pred CchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccH------HHHHHHHHHHHhcCCcCCCCCEEEEE
Confidence 444457778 99999999999999998 568999999874321 23444443332222 369999
Q ss_pred cchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHH
Q 001746 830 DEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILR 909 (1018)
Q Consensus 830 DEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk 909 (1018)
||+|.|.. ...+.|+..|+.. ...+.+|.+||.++.+.+++++|| ..+.|+.|+.++....++
T Consensus 637 DEaD~Lt~------------~AQnALLk~lEep----~~~~~FILi~N~~~kIi~tIrSRC-~~i~F~~ls~~~i~~~L~ 699 (846)
T PRK04132 637 DEADALTQ------------DAQQALRRTMEMF----SSNVRFILSCNYSSKIIEPIQSRC-AIFRFRPLRDEDIAKRLR 699 (846)
T ss_pred ECcccCCH------------HHHHHHHHHhhCC----CCCeEEEEEeCChhhCchHHhhhc-eEEeCCCCCHHHHHHHHH
Confidence 99999842 2245666666542 346788999999999999999999 788999999999999999
Q ss_pred HHHhccCCC-CcccHHHHHHHccCCCHHHHHHHHHHHH
Q 001746 910 IFLAHESLE-SGFQFNELANATEGYSGSDLKNLCIAAA 946 (1018)
Q Consensus 910 ~~L~~~~l~-~dvdl~~LA~~TeGfSgaDL~~L~~~Aa 946 (1018)
.++.++++. ++..+..|+..++| +.+...++++.++
T Consensus 700 ~I~~~Egi~i~~e~L~~Ia~~s~G-DlR~AIn~Lq~~~ 736 (846)
T PRK04132 700 YIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAA 736 (846)
T ss_pred HHHHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 988876654 45568888888887 4455555555443
No 200
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=7.9e-08 Score=109.51 Aligned_cols=97 Identities=30% Similarity=0.486 Sum_probs=75.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch-hhhhh-HHHHHHHHHHHH----HhcCCeEEEecchhhhhhc
Q 001746 765 KGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS-KWFGD-AEKLTKALFSFA----SKLAPVIIFVDEVDSLLGA 838 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~s-~~~ge-~ek~I~~lF~~A----~k~~PsIIfIDEID~L~~~ 838 (1018)
.+|||.||.|+|||+||+.+|+-+++||.-.+|.+|.. .|+|+ .|..|.++...| .+.+..||||||+|.|...
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 46999999999999999999999999999999999865 57776 477888888776 3556799999999999844
Q ss_pred cCCCcc--hHHHHHHHHHHHhhhcc
Q 001746 839 RGGAFE--HEATRRMRNEFMSAWDG 861 (1018)
Q Consensus 839 r~~~~~--~e~~~~il~~LL~~Ldg 861 (1018)
..+... ......+.+.||.++.|
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEG 331 (564)
T ss_pred CccccccccccchhHHHHHHHHhcc
Confidence 332111 11224566778877775
No 201
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.80 E-value=1.4e-07 Score=107.02 Aligned_cols=149 Identities=15% Similarity=0.106 Sum_probs=100.6
Q ss_pred ccccccC-hHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001746 727 RFDDIGA-LEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-------------- 791 (1018)
Q Consensus 727 tfdDIgG-le~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~-------------- 791 (1018)
.|+.|.| .+.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+-..
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c 69 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNC 69 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHH
Confidence 4777777 88888988887633 2345678999999999999999999987321
Q ss_pred ----------EEEEeccccchhhhhhHHHHHHHHHHHHH----hcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHh
Q 001746 792 ----------FISITGSTLTSKWFGDAEKLTKALFSFAS----KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 857 (1018)
Q Consensus 792 ----------fi~Is~seL~s~~~ge~ek~I~~lF~~A~----k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~ 857 (1018)
+..+... +.. -.-..++.+...+. ....-|++|||+|.+. ....|.|+.
T Consensus 70 ~~~~~~~hpD~~~i~~~---~~~--i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~------------~~a~NaLLK 132 (329)
T PRK08058 70 KRIDSGNHPDVHLVAPD---GQS--IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT------------ASAANSLLK 132 (329)
T ss_pred HHHhcCCCCCEEEeccc---ccc--CCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC------------HHHHHHHHH
Confidence 2222111 000 01123344333332 1234699999999883 223467777
Q ss_pred hhccccccCCCcEEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHH
Q 001746 858 AWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRI 910 (1018)
Q Consensus 858 ~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~ 910 (1018)
.|+.. ...+++|.+|+.+..|.+.+++|+ ..+.+..|+.++..++|+.
T Consensus 133 ~LEEP----p~~~~~Il~t~~~~~ll~TIrSRc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 133 FLEEP----SGGTTAILLTENKHQILPTILSRC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HhcCC----CCCceEEEEeCChHhCcHHHHhhc-eeeeCCCCCHHHHHHHHHH
Confidence 77653 235666668888889999999999 6789999999887777753
No 202
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.79 E-value=7.3e-08 Score=109.36 Aligned_cols=169 Identities=20% Similarity=0.279 Sum_probs=98.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhhH-----H-------HHHHHHHHHHHhcCCeEEEe
Q 001746 765 KGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGDA-----E-------KLTKALFSFASKLAPVIIFV 829 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~ge~-----e-------k~I~~lF~~A~k~~PsIIfI 829 (1018)
.+|||+|++||||+++|++|.... +.||+.++|..+........ . ..-...|..| ...+|||
T Consensus 23 ~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a---~gGtL~L 99 (329)
T TIGR02974 23 RPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERA---DGGTLFL 99 (329)
T ss_pred CCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhC---CCCEEEe
Confidence 569999999999999999998766 47999999987643221110 0 0001123333 3589999
Q ss_pred cchhhhhhccCCCcchHHHHHHHHHHHhhhcccc-------ccCCCcEEEEEecCCC-------CCCcHHHHhccCcccc
Q 001746 830 DEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR-------SKESQKILILGATNRP-------FDLDDAVIRRLPRRIY 895 (1018)
Q Consensus 830 DEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~-------~~~~~~VlVIaTTN~p-------~~LD~aLlrRFd~~I~ 895 (1018)
|||+.|... +...|+..++.-. ......+.||++|+.. ..+.+.|..|+. .+.
T Consensus 100 dei~~L~~~------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl~-~~~ 166 (329)
T TIGR02974 100 DELATASLL------------VQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLDRLA-FDV 166 (329)
T ss_pred CChHhCCHH------------HHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHHHhc-chh
Confidence 999998422 2233333332211 1112357888888753 235677777884 345
Q ss_pred ccCCCHHHHHH----HHHHHHhcc----CCC--CcccHHHHHHHc-cCC--CHHHHHHHHHHHHHHH
Q 001746 896 VDLPDAENRMK----ILRIFLAHE----SLE--SGFQFNELANAT-EGY--SGSDLKNLCIAAAYRP 949 (1018)
Q Consensus 896 V~lPd~eeR~e----ILk~~L~~~----~l~--~dvdl~~LA~~T-eGf--SgaDL~~L~~~Aa~~A 949 (1018)
+.+|...+|.+ +++.++... +.. ..++-+.+..+. ..| +.++|+++++.|+..+
T Consensus 167 i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 167 ITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred cCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 66666665544 444544321 111 123333333222 223 4589999988887654
No 203
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.77 E-value=5.2e-09 Score=110.71 Aligned_cols=45 Identities=47% Similarity=0.731 Sum_probs=36.4
Q ss_pred cccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 001746 728 FDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA 788 (1018)
Q Consensus 728 fdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~el 788 (1018)
|+||.|++..|..|.-... + ..+|||+||||||||++|+++..-+
T Consensus 2 f~dI~GQe~aKrAL~iAAa-----------G-----~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAA-----------G-----GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHH-----------C-----C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred hhhhcCcHHHHHHHHHHHc-----------C-----CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999977652 1 2689999999999999999999765
No 204
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.77 E-value=1.4e-07 Score=114.87 Aligned_cols=51 Identities=27% Similarity=0.414 Sum_probs=42.9
Q ss_pred CcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc
Q 001746 725 GVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN 791 (1018)
Q Consensus 725 ~vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~ 791 (1018)
..-|+++.|.++.+..++..+.. .++++|+||||||||++++++|+.++.+
T Consensus 14 ~~~~~~viG~~~a~~~l~~a~~~----------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 14 ERLIDQVIGQEEAVEIIKKAAKQ----------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hhhHhhccCHHHHHHHHHHHHHc----------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 35688999999999999887742 1369999999999999999999999644
No 205
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.77 E-value=7.5e-08 Score=102.43 Aligned_cols=173 Identities=23% Similarity=0.298 Sum_probs=109.1
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-CC----cEEEEecccc
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA-GA----NFISITGSTL 800 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~el-g~----~fi~Is~seL 800 (1018)
..+.||.|.++..+.|.-+... ++ ..+++|.||||||||+-+.++|+++ |- -+..+++++-
T Consensus 24 ~~l~dIVGNe~tv~rl~via~~----------gn----mP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASde 89 (333)
T KOG0991|consen 24 SVLQDIVGNEDTVERLSVIAKE----------GN----MPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDE 89 (333)
T ss_pred hHHHHhhCCHHHHHHHHHHHHc----------CC----CCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccc
Confidence 4578999999999999766522 22 2469999999999999999999998 42 3566666653
Q ss_pred chhhhhhHHHHHHHHHHHHHh-cCC---eEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEec
Q 001746 801 TSKWFGDAEKLTKALFSFASK-LAP---VIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGAT 876 (1018)
Q Consensus 801 ~s~~~ge~ek~I~~lF~~A~k-~~P---sIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTT 876 (1018)
.+ .. .-++--+.|..-+- .+| .||++||+|++... ...+.++++.-. ++ ...+..++
T Consensus 90 RG--ID-vVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~g-----AQQAlRRtMEiy--------S~---ttRFalaC 150 (333)
T KOG0991|consen 90 RG--ID-VVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAG-----AQQALRRTMEIY--------SN---TTRFALAC 150 (333)
T ss_pred cc--cH-HHHHHHHHHHHhhccCCCCceeEEEeeccchhhhH-----HHHHHHHHHHHH--------cc---cchhhhhh
Confidence 22 11 12222234443332 234 49999999998532 233444443222 12 23366688
Q ss_pred CCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHccC
Q 001746 877 NRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEG 932 (1018)
Q Consensus 877 N~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~TeG 932 (1018)
|....+-+.+.+|+ ..+.+...+..+...-|....+.+.+. .+.-++.+.-.++|
T Consensus 151 N~s~KIiEPIQSRC-AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~G 206 (333)
T KOG0991|consen 151 NQSEKIIEPIQSRC-AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQG 206 (333)
T ss_pred cchhhhhhhHHhhh-HhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccc
Confidence 99999999999988 456666667666666555555555543 23335555544444
No 206
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.76 E-value=1.1e-07 Score=107.84 Aligned_cols=194 Identities=22% Similarity=0.241 Sum_probs=113.9
Q ss_pred ccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchh
Q 001746 727 RFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSK 803 (1018)
Q Consensus 727 tfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~s~ 803 (1018)
.+++++|.....+.+.+.+... .....+|||+|++||||+++|++|.... +.+|+.++|..+...
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~------------a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~ 71 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRL------------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN 71 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHH------------hCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHH
Confidence 4667888887777777766442 1223569999999999999999998765 469999999886422
Q ss_pred -----hhhhHH-------HHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhcccc-------c
Q 001746 804 -----WFGDAE-------KLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR-------S 864 (1018)
Q Consensus 804 -----~~ge~e-------k~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~-------~ 864 (1018)
++|... ......|.. ....+|||||||.|... +...|+..++... .
T Consensus 72 ~~~~~lfg~~~~~~~g~~~~~~g~l~~---a~gGtL~l~~i~~L~~~------------~Q~~L~~~l~~~~~~~~g~~~ 136 (326)
T PRK11608 72 LLDSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAPML------------VQEKLLRVIEYGELERVGGSQ 136 (326)
T ss_pred HHHHHHccccccccCCcccccCCchhc---cCCCeEEeCChhhCCHH------------HHHHHHHHHhcCcEEeCCCCc
Confidence 111100 000112322 23579999999998422 2233443333211 0
Q ss_pred cCCCcEEEEEecCCC-------CCCcHHHHhccCccccccCCCHHHHHH----HHHHHHhcc----CCC--CcccHHHHH
Q 001746 865 KESQKILILGATNRP-------FDLDDAVIRRLPRRIYVDLPDAENRMK----ILRIFLAHE----SLE--SGFQFNELA 927 (1018)
Q Consensus 865 ~~~~~VlVIaTTN~p-------~~LD~aLlrRFd~~I~V~lPd~eeR~e----ILk~~L~~~----~l~--~dvdl~~LA 927 (1018)
.....+.||+||+.. ..+.+.|..||. .+.+.+|...+|.+ ++.+++... +.. ..++-+.+.
T Consensus 137 ~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~ 215 (326)
T PRK11608 137 PLQVNVRLVCATNADLPAMVAEGKFRADLLDRLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARE 215 (326)
T ss_pred eeeccEEEEEeCchhHHHHHHcCCchHHHHHhcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHH
Confidence 111257788888653 346677888884 35566677766644 444544321 111 223333333
Q ss_pred HHc-cCC--CHHHHHHHHHHHHHH
Q 001746 928 NAT-EGY--SGSDLKNLCIAAAYR 948 (1018)
Q Consensus 928 ~~T-eGf--SgaDL~~L~~~Aa~~ 948 (1018)
.+. ..| +-++|++++..|+..
T Consensus 216 ~L~~y~WPGNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 216 TLLNYRWPGNIRELKNVVERSVYR 239 (326)
T ss_pred HHHhCCCCcHHHHHHHHHHHHHHh
Confidence 322 233 458999998888764
No 207
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.75 E-value=2.4e-07 Score=110.85 Aligned_cols=229 Identities=17% Similarity=0.192 Sum_probs=146.9
Q ss_pred ccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecccc
Q 001746 731 IGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA----------GANFISITGSTL 800 (1018)
Q Consensus 731 IgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~el----------g~~fi~Is~seL 800 (1018)
+.+.+.-..+|..++...+... .. ..-++++|-||||||.+++.+-.++ .+.|+.|++-.+
T Consensus 398 LpcRe~E~~~I~~f~~~~i~~~----~~-----g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l 468 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSFISDQ----GL-----GSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRL 468 (767)
T ss_pred ccchhHHHHHHHHHHHhhcCCC----CC-----ceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceee
Confidence 4456667777777776543321 11 1248999999999999999998866 367888888666
Q ss_pred chh----------hhhh------HHHHHHHHHHHH-HhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhcccc
Q 001746 801 TSK----------WFGD------AEKLTKALFSFA-SKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR 863 (1018)
Q Consensus 801 ~s~----------~~ge------~ek~I~~lF~~A-~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~ 863 (1018)
.+. +.|+ .-..+..-|... .+..++||+|||+|.|+...+ ..|..+-...
T Consensus 469 ~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~Q-------------dVlYn~fdWp 535 (767)
T KOG1514|consen 469 ASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQ-------------DVLYNIFDWP 535 (767)
T ss_pred cCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccH-------------HHHHHHhcCC
Confidence 432 1111 222334444411 234679999999999986542 2233333334
Q ss_pred ccCCCcEEEEEecCCCCCCcHHH----HhccC-ccccccCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHccCCCH--H
Q 001746 864 SKESQKILILGATNRPFDLDDAV----IRRLP-RRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSG--S 936 (1018)
Q Consensus 864 ~~~~~~VlVIaTTN~p~~LD~aL----lrRFd-~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeGfSg--a 936 (1018)
..++.+++||+.+|..+....-| -+|.+ .+|.|.+.+.++..+|+...+........-..+-+|+.....|| +
T Consensus 536 t~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaR 615 (767)
T KOG1514|consen 536 TLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDAR 615 (767)
T ss_pred cCCCCceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHH
Confidence 45677899999988875433322 22543 46788999999999999999987754444445666666665665 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCHHHHHHHHHhhCCCcc
Q 001746 937 DLKNLCIAAAYRPVQELLEEERKRGKNDAAPVLRPLKLEDFIQSKAKVGPSVA 989 (1018)
Q Consensus 937 DL~~L~~~Aa~~Airr~~~~~~~~~~~~~~~~~rpLT~eDF~~Al~kv~PSvs 989 (1018)
-...+|.+|+..|-.+.. .+ .......|++.|+.+|+.++..+.-
T Consensus 616 raldic~RA~Eia~~~~~-----~~---k~~~~q~v~~~~v~~Ai~em~~~~~ 660 (767)
T KOG1514|consen 616 RALDICRRAAEIAEERNV-----KG---KLAVSQLVGILHVMEAINEMLASPY 660 (767)
T ss_pred HHHHHHHHHHHHhhhhcc-----cc---cccccceeehHHHHHHHHHHhhhhH
Confidence 444667777765544422 00 1122356899999999999976543
No 208
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.73 E-value=8.4e-08 Score=115.38 Aligned_cols=193 Identities=19% Similarity=0.212 Sum_probs=114.9
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccch
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTS 802 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~s 802 (1018)
.+|++++|.....+.+.+.+... .....+|||+|++||||+++|++|.... +.+|+.++|..+..
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~------------a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~ 260 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVV------------ARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE 260 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHH------------hCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH
Confidence 56888899888888877776442 1223569999999999999999999886 57999999988743
Q ss_pred hhhhhHHHHHHHHHHHH---------------HhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhcccc----
Q 001746 803 KWFGDAEKLTKALFSFA---------------SKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR---- 863 (1018)
Q Consensus 803 ~~~ge~ek~I~~lF~~A---------------~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~---- 863 (1018)
.... ..+|... ......+||||||+.|... +...|+..++.-.
T Consensus 261 ~~~~------~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~------------~Q~~Ll~~l~~~~~~~~ 322 (534)
T TIGR01817 261 TLLE------SELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPA------------FQAKLLRVLQEGEFERV 322 (534)
T ss_pred HHHH------HHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCHH------------HHHHHHHHHhcCcEEEC
Confidence 2211 1122110 1123579999999998422 2233444443211
Q ss_pred ---ccCCCcEEEEEecCCC-------CCCcHHHHhccCccccccCCCHHHH----HHHHHHHHhccC----CCCccc---
Q 001746 864 ---SKESQKILILGATNRP-------FDLDDAVIRRLPRRIYVDLPDAENR----MKILRIFLAHES----LESGFQ--- 922 (1018)
Q Consensus 864 ---~~~~~~VlVIaTTN~p-------~~LD~aLlrRFd~~I~V~lPd~eeR----~eILk~~L~~~~----l~~dvd--- 922 (1018)
......+.+|+||+.. ..+.+.|..|+. .+.+.+|...+| ..++..++.... ....++
T Consensus 323 ~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~-~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a 401 (534)
T TIGR01817 323 GGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRIN-VVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSA 401 (534)
T ss_pred CCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhc-CCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHH
Confidence 0111247788888654 235566666774 344555555444 445566655321 111233
Q ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHH
Q 001746 923 FNELANATEGYSGSDLKNLCIAAAYRP 949 (1018)
Q Consensus 923 l~~LA~~TeGfSgaDL~~L~~~Aa~~A 949 (1018)
+..|....=--+.++|+++++.|+..+
T Consensus 402 ~~~L~~~~WPGNvrEL~~v~~~a~~~~ 428 (534)
T TIGR01817 402 IRVLMSCKWPGNVRELENCLERTATLS 428 (534)
T ss_pred HHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 333333221125689999998887643
No 209
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.72 E-value=8.9e-08 Score=108.51 Aligned_cols=69 Identities=38% Similarity=0.495 Sum_probs=46.6
Q ss_pred CcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEeccccch
Q 001746 725 GVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAG--ANFISITGSTLTS 802 (1018)
Q Consensus 725 ~vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg--~~fi~Is~seL~s 802 (1018)
....+.++|+.+.+++.--.+.+.- .+ .-..++|||.||||||||+||-+||+++| .||+.++++++++
T Consensus 20 ~~~~~GlVGQ~~AReAagiiv~mIk--------~~-K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS 90 (398)
T PF06068_consen 20 RYIADGLVGQEKAREAAGIIVDMIK--------EG-KIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYS 90 (398)
T ss_dssp -SEETTEES-HHHHHHHHHHHHHHH--------TT---TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-B
T ss_pred eeccccccChHHHHHHHHHHHHHHh--------cc-cccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeee
Confidence 3345678999999988876665421 11 12348899999999999999999999996 7887766666543
No 210
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.71 E-value=5.5e-08 Score=116.54 Aligned_cols=195 Identities=19% Similarity=0.263 Sum_probs=113.2
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccch
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTS 802 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~s 802 (1018)
.+|+++.|.....+.+.+.+... .....+|||+|++||||+++|++|.+.. +.||+.++|..+..
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~------------A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e 276 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLY------------ARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAE 276 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHH------------hCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCCh
Confidence 56889999998888888777441 1223569999999999999999998765 57999999987743
Q ss_pred hhh-----hhHH--------HHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhcccc------
Q 001746 803 KWF-----GDAE--------KLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR------ 863 (1018)
Q Consensus 803 ~~~-----ge~e--------k~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~------ 863 (1018)
... |..+ ..-..+|+.| ....||||||+.|... +...|+..+..-.
T Consensus 277 ~lleseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~Lp~~------------~Q~~Ll~~L~~~~~~r~g~ 341 (526)
T TIGR02329 277 SLLEAELFGYEEGAFTGARRGGRTGLIEAA---HRGTLFLDEIGEMPLP------------LQTRLLRVLEEREVVRVGG 341 (526)
T ss_pred hHHHHHhcCCcccccccccccccccchhhc---CCceEEecChHhCCHH------------HHHHHHHHHhcCcEEecCC
Confidence 221 1000 0011233333 3478999999998422 2233333332110
Q ss_pred -ccCCCcEEEEEecCCCC-------CCcHHHHhccCccccccCCCHHHHHH----HHHHHHhccCCC--CcccHHHHHH-
Q 001746 864 -SKESQKILILGATNRPF-------DLDDAVIRRLPRRIYVDLPDAENRMK----ILRIFLAHESLE--SGFQFNELAN- 928 (1018)
Q Consensus 864 -~~~~~~VlVIaTTN~p~-------~LD~aLlrRFd~~I~V~lPd~eeR~e----ILk~~L~~~~l~--~dvdl~~LA~- 928 (1018)
......+.||++|+..- .+.+.+..|+. .+.+.+|...+|.+ ++..++...... ..++-+.+..
T Consensus 342 ~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~-~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~ 420 (526)
T TIGR02329 342 TEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLS-ILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVL 420 (526)
T ss_pred CceeeecceEEeccCCCHHHHhhhcchhHHHHHhcC-CcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHh
Confidence 01112457888886642 23344555663 45666777766654 455555432110 0122111111
Q ss_pred ------H-ccCC--CHHHHHHHHHHHHHH
Q 001746 929 ------A-TEGY--SGSDLKNLCIAAAYR 948 (1018)
Q Consensus 929 ------~-TeGf--SgaDL~~L~~~Aa~~ 948 (1018)
+ ...| +-++|++++.+++..
T Consensus 421 ~~~~~~L~~y~WPGNvrEL~nvier~~i~ 449 (526)
T TIGR02329 421 AGVADPLQRYPWPGNVRELRNLVERLALE 449 (526)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 1 2233 458999998887754
No 211
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.71 E-value=1.4e-07 Score=116.88 Aligned_cols=196 Identities=18% Similarity=0.289 Sum_probs=116.5
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccch
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTS 802 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~s 802 (1018)
..|++++|.....+.+.+.+... .....+|||+|++|||||++|++|.... +.+|+.++|..+..
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~------------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~ 440 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMV------------AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA 440 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHH------------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh
Confidence 56889999888888887766441 1223569999999999999999998865 57999999987643
Q ss_pred h-----hhhhH-------HHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhcccc-------
Q 001746 803 K-----WFGDA-------EKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR------- 863 (1018)
Q Consensus 803 ~-----~~ge~-------ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~------- 863 (1018)
. .+|.. .......|..| ..++||||||+.+... +...|+..++...
T Consensus 441 ~~~~~~lfg~~~~~~~g~~~~~~g~le~a---~~GtL~Ldei~~L~~~------------~Q~~L~~~l~~~~~~~~g~~ 505 (686)
T PRK15429 441 GLLESDLFGHERGAFTGASAQRIGRFELA---DKSSLFLDEVGDMPLE------------LQPKLLRVLQEQEFERLGSN 505 (686)
T ss_pred hHhhhhhcCcccccccccccchhhHHHhc---CCCeEEEechhhCCHH------------HHHHHHHHHHhCCEEeCCCC
Confidence 2 11210 00111233333 3589999999998322 2233333332210
Q ss_pred ccCCCcEEEEEecCCCC-------CCcHHHHhccCccccccCCCHHHHHH----HHHHHHhcc----CCC-Cccc---HH
Q 001746 864 SKESQKILILGATNRPF-------DLDDAVIRRLPRRIYVDLPDAENRMK----ILRIFLAHE----SLE-SGFQ---FN 924 (1018)
Q Consensus 864 ~~~~~~VlVIaTTN~p~-------~LD~aLlrRFd~~I~V~lPd~eeR~e----ILk~~L~~~----~l~-~dvd---l~ 924 (1018)
......+.||++|+..- .+...+..|+. .+.+.+|...+|.+ +++.++... +.. ..+. +.
T Consensus 506 ~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~ 584 (686)
T PRK15429 506 KIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLN-VFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLR 584 (686)
T ss_pred CcccceEEEEEeCCCCHHHHHHcCcccHHHHhccC-eeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHH
Confidence 11123578888887642 24445555663 45677788777765 445554432 111 1122 33
Q ss_pred HHHHHccCCCHHHHHHHHHHHHHHH
Q 001746 925 ELANATEGYSGSDLKNLCIAAAYRP 949 (1018)
Q Consensus 925 ~LA~~TeGfSgaDL~~L~~~Aa~~A 949 (1018)
.|....=--+.++|+++++.|+..+
T Consensus 585 ~L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 585 TLSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhC
Confidence 3332221125689999999888643
No 212
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.71 E-value=2.6e-07 Score=110.62 Aligned_cols=167 Identities=23% Similarity=0.263 Sum_probs=97.2
Q ss_pred cccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-EEEE---eccccchhhh
Q 001746 730 DIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN-FISI---TGSTLTSKWF 805 (1018)
Q Consensus 730 DIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~-fi~I---s~seL~s~~~ 805 (1018)
.|.|.+.+|..|.-.+..-.. .....+..++...+|||+|+||||||++|+++++.+... |+.. ++..+.....
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~--~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~ 281 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVH--KNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVT 281 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCc--cccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccce
Confidence 467888887777554422110 001112223444579999999999999999999987533 3221 2212211110
Q ss_pred hhH---HHHH-HHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhc---------cccccCCCcEEE
Q 001746 806 GDA---EKLT-KALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWD---------GLRSKESQKILI 872 (1018)
Q Consensus 806 ge~---ek~I-~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ld---------gl~~~~~~~VlV 872 (1018)
... +..+ ...+. .....+++|||++.+... ....|+..|+ |....-+.+..|
T Consensus 282 ~~~~~g~~~~~~G~l~---~A~~Gil~iDEi~~l~~~------------~q~~L~e~me~~~i~i~k~G~~~~l~~~~~v 346 (509)
T smart00350 282 RDPETREFTLEGGALV---LADNGVCCIDEFDKMDDS------------DRTAIHEAMEQQTISIAKAGITTTLNARCSV 346 (509)
T ss_pred EccCcceEEecCccEE---ecCCCEEEEechhhCCHH------------HHHHHHHHHhcCEEEEEeCCEEEEecCCcEE
Confidence 000 0000 00011 123479999999998422 1222333332 222222357889
Q ss_pred EEecCCCC-------------CCcHHHHhccCcccc-ccCCCHHHHHHHHHHHHh
Q 001746 873 LGATNRPF-------------DLDDAVIRRLPRRIY-VDLPDAENRMKILRIFLA 913 (1018)
Q Consensus 873 IaTTN~p~-------------~LD~aLlrRFd~~I~-V~lPd~eeR~eILk~~L~ 913 (1018)
|||+|..+ .|++++++||+..+. ...|+.+...+|.++.+.
T Consensus 347 iAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 347 LAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred EEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHH
Confidence 99999652 599999999987544 477999999999988764
No 213
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.69 E-value=9.1e-07 Score=102.14 Aligned_cols=230 Identities=20% Similarity=0.224 Sum_probs=145.2
Q ss_pred cccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEeccccch--
Q 001746 730 DIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA-----GANFISITGSTLTS-- 802 (1018)
Q Consensus 730 DIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~el-----g~~fi~Is~seL~s-- 802 (1018)
.+.|.+..+..+++++..++.. ....++.+.|.||||||.+..-+...+ ....++++|.++..
T Consensus 151 ~l~gRe~e~~~v~~F~~~hle~----------~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLHLEL----------NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CccchHHHHHHHHHHHHhhhhc----------ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 4678888899999988776532 234579999999999999999877655 23558888876421
Q ss_pred ----hhhhh---------HHHHHHHHHHHH-Hhc-CCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCC
Q 001746 803 ----KWFGD---------AEKLTKALFSFA-SKL-APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKES 867 (1018)
Q Consensus 803 ----~~~ge---------~ek~I~~lF~~A-~k~-~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~ 867 (1018)
+..++ ........|..- ... .+-||++||+|.|+...+ +.+..+..+....+
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~-------------~vLy~lFewp~lp~ 287 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQ-------------TVLYTLFEWPKLPN 287 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhccc-------------ceeeeehhcccCCc
Confidence 11111 122222333332 122 377999999999984432 22222333333466
Q ss_pred CcEEEEEecCCCCCCcHHHHh------ccCccccccCCCHHHHHHHHHHHHhccCCCC--cccHHHHHHHccCCCHHHHH
Q 001746 868 QKILILGATNRPFDLDDAVIR------RLPRRIYVDLPDAENRMKILRIFLAHESLES--GFQFNELANATEGYSGSDLK 939 (1018)
Q Consensus 868 ~~VlVIaTTN~p~~LD~aLlr------RFd~~I~V~lPd~eeR~eILk~~L~~~~l~~--dvdl~~LA~~TeGfSgaDL~ 939 (1018)
.++++||.+|..+.-|..|.+ .-+..+.|++++.++..+||+..+....... +..++..|....|.|| |++
T Consensus 288 sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlR 366 (529)
T KOG2227|consen 288 SRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLR 366 (529)
T ss_pred ceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHH
Confidence 789999999998776655544 2356788999999999999999998766443 2346778888888775 455
Q ss_pred H---HHHHHHHHHHHHHHHHHHhcCCCC----CCCCc-cCCCHHHHHHHHHhhCCC
Q 001746 940 N---LCIAAAYRPVQELLEEERKRGKND----AAPVL-RPLKLEDFIQSKAKVGPS 987 (1018)
Q Consensus 940 ~---L~~~Aa~~Airr~~~~~~~~~~~~----~~~~~-rpLT~eDF~~Al~kv~PS 987 (1018)
. +|+.|...+-.+ .+...... ..+.. .+|.++++..++.++--+
T Consensus 367 kaLdv~R~aiEI~E~e----~r~~~~~~l~~~~~p~~~~~v~~~~va~viSk~~~s 418 (529)
T KOG2227|consen 367 KALDVCRRAIEIAEIE----KRKILDDPLSPGTSPEKKKKVGVEHVAAVISKVDGS 418 (529)
T ss_pred HHHHHHHHHHHHHHHH----HhhccccCCCCCCCcccccccchHHHHHHhhhhccC
Confidence 4 344444322211 11111111 11111 457799999999888644
No 214
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.69 E-value=1.3e-07 Score=113.45 Aligned_cols=193 Identities=19% Similarity=0.292 Sum_probs=114.1
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHH-----------hCCcEEE
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATE-----------AGANFIS 794 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~e-----------lg~~fi~ 794 (1018)
.+|+++.|.....+.+.+.+... .....+|||+|++||||+++|++|.+. .+.||+.
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~------------A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~ 283 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLY------------ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVA 283 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHH------------hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEE
Confidence 46889999998888888877441 122356999999999999999999887 3679999
Q ss_pred Eeccccchhhh-----hhHHH--------HHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhcc
Q 001746 795 ITGSTLTSKWF-----GDAEK--------LTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDG 861 (1018)
Q Consensus 795 Is~seL~s~~~-----ge~ek--------~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldg 861 (1018)
++|..+..... |..+. .-..+|+.| ....||||||+.|... +...|+..+..
T Consensus 284 inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~Lp~~------------~Q~kLl~~L~e 348 (538)
T PRK15424 284 VNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA---HGGTLFLDEIGEMPLP------------LQTRLLRVLEE 348 (538)
T ss_pred eecccCChhhHHHHhcCCccccccCccccccCCchhcc---CCCEEEEcChHhCCHH------------HHHHHHhhhhc
Confidence 99987643221 11000 011233333 3479999999998422 22334443332
Q ss_pred cc-------ccCCCcEEEEEecCCCC-------CCcHHHHhccCccccccCCCHHHHHH----HHHHHHhc----cCCCC
Q 001746 862 LR-------SKESQKILILGATNRPF-------DLDDAVIRRLPRRIYVDLPDAENRMK----ILRIFLAH----ESLES 919 (1018)
Q Consensus 862 l~-------~~~~~~VlVIaTTN~p~-------~LD~aLlrRFd~~I~V~lPd~eeR~e----ILk~~L~~----~~l~~ 919 (1018)
-. ..-...+.||++|+..- .+.+.+..|+ ..+.+.+|...+|.+ ++..++.. .+..
T Consensus 349 ~~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL-~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~- 426 (538)
T PRK15424 349 KEVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRL-SILRLQLPPLRERVADILPLAESFLKQSLAALSAP- 426 (538)
T ss_pred CeEEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHh-cCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCC-
Confidence 10 11123467888887641 1334455566 345677777776654 45555543 2211
Q ss_pred cccHHHH-------HH-HccCC--CHHHHHHHHHHHHHH
Q 001746 920 GFQFNEL-------AN-ATEGY--SGSDLKNLCIAAAYR 948 (1018)
Q Consensus 920 dvdl~~L-------A~-~TeGf--SgaDL~~L~~~Aa~~ 948 (1018)
+.-+.+ .. ....| +.++|++++++++..
T Consensus 427 -~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~ 464 (538)
T PRK15424 427 -FSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALF 464 (538)
T ss_pred -CCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 111111 11 12223 458999999888763
No 215
>PRK12377 putative replication protein; Provisional
Probab=98.68 E-value=9.7e-08 Score=104.33 Aligned_cols=107 Identities=17% Similarity=0.240 Sum_probs=67.7
Q ss_pred cccccCCCCCCccccccc----ChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh--
Q 001746 715 VSAVVPPGEIGVRFDDIG----ALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA-- 788 (1018)
Q Consensus 715 ~~~ii~~~e~~vtfdDIg----Gle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~el-- 788 (1018)
...-+++.....+|+... |...+...+..++.. |. ....+++|+||||||||+||.|||+++
T Consensus 60 ~~s~i~~~~~~~tFdnf~~~~~~~~~a~~~a~~~a~~-------~~-----~~~~~l~l~G~~GtGKThLa~AIa~~l~~ 127 (248)
T PRK12377 60 NRSGIQPLHRKCSFANYQVQNDGQRYALSQAKSIADE-------LM-----TGCTNFVFSGKPGTGKNHLAAAIGNRLLA 127 (248)
T ss_pred HHcCCCcccccCCcCCcccCChhHHHHHHHHHHHHHH-------HH-----hcCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 344566666677888874 333344455554432 11 123579999999999999999999988
Q ss_pred -CCcEEEEeccccchhhhhhHH--HHHHHHHHHHHhcCCeEEEecchhhh
Q 001746 789 -GANFISITGSTLTSKWFGDAE--KLTKALFSFASKLAPVIIFVDEVDSL 835 (1018)
Q Consensus 789 -g~~fi~Is~seL~s~~~ge~e--k~I~~lF~~A~k~~PsIIfIDEID~L 835 (1018)
|..++.++.++++........ .....++... ....+|+|||+...
T Consensus 128 ~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~ 175 (248)
T PRK12377 128 KGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQ 175 (248)
T ss_pred cCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 677888888777654322110 0111222222 35689999999764
No 216
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.68 E-value=7.6e-08 Score=110.90 Aligned_cols=196 Identities=20% Similarity=0.252 Sum_probs=114.1
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccccc
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA----GANFISITGSTLT 801 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~el----g~~fi~Is~seL~ 801 (1018)
..+++++|-....+.+.+.+.. + .....+|||+|++||||+++|++|.... +.|||.++|..+.
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~-------~-----ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKA-------Y-----APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHh-------h-----CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 4577888887777777776633 1 1223569999999999999999997543 6799999998875
Q ss_pred hhhhhh------------HHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhcc-----c--
Q 001746 802 SKWFGD------------AEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDG-----L-- 862 (1018)
Q Consensus 802 s~~~ge------------~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldg-----l-- 862 (1018)
...... ....-..+|+.| ...+||+|||..+-.. ....++..++. +
T Consensus 143 en~~~~eLFG~~kGaftGa~~~k~Glfe~A---~GGtLfLDEI~~LP~~------------~Q~kLl~~le~g~~~rvG~ 207 (403)
T COG1221 143 ENLQEAELFGHEKGAFTGAQGGKAGLFEQA---NGGTLFLDEIHRLPPE------------GQEKLLRVLEEGEYRRVGG 207 (403)
T ss_pred cCHHHHHHhccccceeecccCCcCchheec---CCCEEehhhhhhCCHh------------HHHHHHHHHHcCceEecCC
Confidence 432211 111112233333 2379999999998432 12334444442 1
Q ss_pred cccCCCcEEEEEecCCC--CCCcH--HHHh-ccCccccccCCCHHHHHH----HHHHHHh----ccCCCCcccHHHHHHH
Q 001746 863 RSKESQKILILGATNRP--FDLDD--AVIR-RLPRRIYVDLPDAENRMK----ILRIFLA----HESLESGFQFNELANA 929 (1018)
Q Consensus 863 ~~~~~~~VlVIaTTN~p--~~LD~--aLlr-RFd~~I~V~lPd~eeR~e----ILk~~L~----~~~l~~dvdl~~LA~~ 929 (1018)
.......|.+|+||+.. ..+-. .+.+ ++. +.+.+|...+|.. ++++++. ..+.....+..++...
T Consensus 208 ~~~~~~dVRli~AT~~~l~~~~~~g~dl~~rl~~--~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~ 285 (403)
T COG1221 208 SQPRPVDVRLICATTEDLEEAVLAGADLTRRLNI--LTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRA 285 (403)
T ss_pred CCCcCCCceeeeccccCHHHHHHhhcchhhhhcC--ceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHH
Confidence 12234568888888652 22222 3444 443 3455566666543 4444443 3333322222222222
Q ss_pred ccCC----CHHHHHHHHHHHHHHHH
Q 001746 930 TEGY----SGSDLKNLCIAAAYRPV 950 (1018)
Q Consensus 930 TeGf----SgaDL~~L~~~Aa~~Ai 950 (1018)
...| +.++|++++..++..+.
T Consensus 286 L~~y~~pGNirELkN~Ve~~~~~~~ 310 (403)
T COG1221 286 LLAYDWPGNIRELKNLVERAVAQAS 310 (403)
T ss_pred HHhCCCCCcHHHHHHHHHHHHHHhc
Confidence 2223 56999999999988764
No 217
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.68 E-value=6.3e-08 Score=113.59 Aligned_cols=199 Identities=23% Similarity=0.301 Sum_probs=118.0
Q ss_pred CCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 001746 724 IGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTL 800 (1018)
Q Consensus 724 ~~vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL 800 (1018)
...+|++|+|-......+.+.+... .....+|||.|.+||||..+|++|-+.+ +.|||.++|+.+
T Consensus 240 a~y~f~~Iig~S~~m~~~~~~akr~------------A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAi 307 (560)
T COG3829 240 AKYTFDDIIGESPAMLRVLELAKRI------------AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAI 307 (560)
T ss_pred cccchhhhccCCHHHHHHHHHHHhh------------cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccC
Confidence 3578999999988887777766331 2344679999999999999999998877 679999999876
Q ss_pred chhhhhh-HHHHHHHHHHHHHhc---------CCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhc-------ccc
Q 001746 801 TSKWFGD-AEKLTKALFSFASKL---------APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWD-------GLR 863 (1018)
Q Consensus 801 ~s~~~ge-~ek~I~~lF~~A~k~---------~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ld-------gl~ 863 (1018)
-.....+ .=......|.-|.+. ....||+|||..|. ..+...||..|. |-.
T Consensus 308 Pe~LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgemp------------l~LQaKLLRVLQEkei~rvG~t 375 (560)
T COG3829 308 PETLLESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMP------------LPLQAKLLRVLQEKEIERVGGT 375 (560)
T ss_pred CHHHHHHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccCC------------HHHHHHHHHHHhhceEEecCCC
Confidence 4332211 001112233333332 23689999998873 122333443332 111
Q ss_pred ccCCCcEEEEEecCCCC-------CCcHHHHhccCccccccCCCHHHHHH----HHHHHHhc----cCCC-CcccHHHHH
Q 001746 864 SKESQKILILGATNRPF-------DLDDAVIRRLPRRIYVDLPDAENRMK----ILRIFLAH----ESLE-SGFQFNELA 927 (1018)
Q Consensus 864 ~~~~~~VlVIaTTN~p~-------~LD~aLlrRFd~~I~V~lPd~eeR~e----ILk~~L~~----~~l~-~dvdl~~LA 927 (1018)
......|-||||||+.= .+-+.|.-|. .++.+..|...+|.+ +...++.+ .+-. ..+.-+.++
T Consensus 376 ~~~~vDVRIIAATN~nL~~~i~~G~FReDLYYRL-NV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~ 454 (560)
T COG3829 376 KPIPVDVRIIAATNRNLEKMIAEGTFREDLYYRL-NVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALA 454 (560)
T ss_pred CceeeEEEEEeccCcCHHHHHhcCcchhhheeee-ceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHH
Confidence 22334688999999741 1222333355 355677787766655 33344432 2211 222223333
Q ss_pred HHc-cCC--CHHHHHHHHHHHHH
Q 001746 928 NAT-EGY--SGSDLKNLCIAAAY 947 (1018)
Q Consensus 928 ~~T-eGf--SgaDL~~L~~~Aa~ 947 (1018)
... ..| +.++|.|++..|+.
T Consensus 455 ~L~~y~WPGNVRELeNviER~v~ 477 (560)
T COG3829 455 LLLRYDWPGNVRELENVIERAVN 477 (560)
T ss_pred HHHhCCCCchHHHHHHHHHHHHh
Confidence 322 233 45899999998875
No 218
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.68 E-value=2e-07 Score=113.33 Aligned_cols=136 Identities=21% Similarity=0.320 Sum_probs=88.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEeccccchhhhhhH--HHHHH-H--HHH--HHHhcCCeEEEecchhhh
Q 001746 765 KGILLFGPPGTGKTLLAKALATEAG--ANFISITGSTLTSKWFGDA--EKLTK-A--LFS--FASKLAPVIIFVDEVDSL 835 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~elg--~~fi~Is~seL~s~~~ge~--ek~I~-~--lF~--~A~k~~PsIIfIDEID~L 835 (1018)
.+|||.|+||||||++|++++..+. .+|+.+.........+|.. +..+. . .|. ...+....|||||||+.+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 5799999999999999999999875 3688877533223333332 11000 0 000 000112369999999998
Q ss_pred hhccCCCcchHHHHHHHHHHHhhhcc---------ccccCCCcEEEEEecCCCC---CCcHHHHhccCcccccc-CCCHH
Q 001746 836 LGARGGAFEHEATRRMRNEFMSAWDG---------LRSKESQKILILGATNRPF---DLDDAVIRRLPRRIYVD-LPDAE 902 (1018)
Q Consensus 836 ~~~r~~~~~~e~~~~il~~LL~~Ldg---------l~~~~~~~VlVIaTTN~p~---~LD~aLlrRFd~~I~V~-lPd~e 902 (1018)
.. .+.+.|+..|+. .......++.||+|+|..+ .|.++++.||...+.+. .|+.+
T Consensus 97 ~~------------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~~ 164 (589)
T TIGR02031 97 DD------------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQD 164 (589)
T ss_pred CH------------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCHH
Confidence 42 233444444432 1112224688999888765 69999999999877665 46888
Q ss_pred HHHHHHHHHH
Q 001746 903 NRMKILRIFL 912 (1018)
Q Consensus 903 eR~eILk~~L 912 (1018)
+|.+|++..+
T Consensus 165 er~eil~~~~ 174 (589)
T TIGR02031 165 LRVEIVRRER 174 (589)
T ss_pred HHHHHHHHHH
Confidence 8999998866
No 219
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.67 E-value=4.2e-07 Score=108.91 Aligned_cols=195 Identities=17% Similarity=0.230 Sum_probs=114.8
Q ss_pred cccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhh
Q 001746 728 FDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKW 804 (1018)
Q Consensus 728 fdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~s~~ 804 (1018)
+.+++|.....+.+.+.+... .....+|||+|++||||+++|++|.... +.+|+.++|..+....
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~------------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~ 253 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVV------------AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESL 253 (509)
T ss_pred CCceeecCHHHHHHHHHHHHH------------hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHH
Confidence 456777777777777766441 1223569999999999999999999876 5799999998874321
Q ss_pred h-----hhHH-------HHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhcccc-------cc
Q 001746 805 F-----GDAE-------KLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR-------SK 865 (1018)
Q Consensus 805 ~-----ge~e-------k~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~-------~~ 865 (1018)
. |... ......|..| ...+|||||||.|... +...|+..++... ..
T Consensus 254 ~e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L~~~------------~Q~~Ll~~l~~~~~~~~g~~~~ 318 (509)
T PRK05022 254 AESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGELPLA------------LQAKLLRVLQYGEIQRVGSDRS 318 (509)
T ss_pred HHHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhCCHH------------HHHHHHHHHhcCCEeeCCCCcc
Confidence 1 1100 0001123333 3578999999998422 2233333332211 01
Q ss_pred CCCcEEEEEecCCC-------CCCcHHHHhccCccccccCCCHHHHHH----HHHHHHhcc----CC-CCcccHHHHHHH
Q 001746 866 ESQKILILGATNRP-------FDLDDAVIRRLPRRIYVDLPDAENRMK----ILRIFLAHE----SL-ESGFQFNELANA 929 (1018)
Q Consensus 866 ~~~~VlVIaTTN~p-------~~LD~aLlrRFd~~I~V~lPd~eeR~e----ILk~~L~~~----~l-~~dvdl~~LA~~ 929 (1018)
....+.||++|+.. ..+.+.|..|+. .+.+.+|...+|.+ ++++++... +. ...++-+.+...
T Consensus 319 ~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L 397 (509)
T PRK05022 319 LRVDVRVIAATNRDLREEVRAGRFRADLYHRLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAAL 397 (509)
T ss_pred eecceEEEEecCCCHHHHHHcCCccHHHHhccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 12357888888764 235566666763 45566777766654 444444322 11 122333333322
Q ss_pred c-cCC--CHHHHHHHHHHHHHHHH
Q 001746 930 T-EGY--SGSDLKNLCIAAAYRPV 950 (1018)
Q Consensus 930 T-eGf--SgaDL~~L~~~Aa~~Ai 950 (1018)
. ..| +.++|++++..|+..+-
T Consensus 398 ~~y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 398 LAYDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred HhCCCCCcHHHHHHHHHHHHHhcC
Confidence 2 223 56999999999887653
No 220
>PRK08116 hypothetical protein; Validated
Probab=98.66 E-value=6.5e-08 Score=106.80 Aligned_cols=129 Identities=19% Similarity=0.247 Sum_probs=74.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhhH----HHHHHHHHHHHHhcCCeEEEecchhhhh
Q 001746 764 CKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGDA----EKLTKALFSFASKLAPVIIFVDEVDSLL 836 (1018)
Q Consensus 764 ~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~ge~----ek~I~~lF~~A~k~~PsIIfIDEID~L~ 836 (1018)
..+++|+|++|||||+||.|||+++ +.+++.++.++++....... ......++... ....+|+|||+....
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l--~~~dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSL--VNADLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHh--cCCCEEEEecccCCC
Confidence 3579999999999999999999987 78899998887765432211 01111222222 235799999996421
Q ss_pred hccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCC-CC----CcHHHHhcc---CccccccCCCHHHHHHHH
Q 001746 837 GARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP-FD----LDDAVIRRL---PRRIYVDLPDAENRMKIL 908 (1018)
Q Consensus 837 ~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p-~~----LD~aLlrRF---d~~I~V~lPd~eeR~eIL 908 (1018)
. . ......|...++..... ...+|.|||.+ .. ++..+.+|+ ...|.+.-|+ -|..+.
T Consensus 192 ~-------t---~~~~~~l~~iin~r~~~---~~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d--~R~~~~ 256 (268)
T PRK08116 192 D-------T---EWAREKVYNIIDSRYRK---GLPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKS--YRKEIA 256 (268)
T ss_pred C-------C---HHHHHHHHHHHHHHHHC---CCCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcC--hhHHHH
Confidence 1 1 11233444555543221 22366677654 33 456777774 2234444444 344444
Q ss_pred H
Q 001746 909 R 909 (1018)
Q Consensus 909 k 909 (1018)
+
T Consensus 257 ~ 257 (268)
T PRK08116 257 K 257 (268)
T ss_pred H
Confidence 4
No 221
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.66 E-value=1.3e-06 Score=99.07 Aligned_cols=144 Identities=12% Similarity=0.128 Sum_probs=97.2
Q ss_pred hHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------------------
Q 001746 734 LEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN---------------------- 791 (1018)
Q Consensus 734 le~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~---------------------- 791 (1018)
+....+.|...+.. -+.+..+||+||+|+||+.+|+++|+.+-+.
T Consensus 7 ~~~~~~~l~~~~~~-------------~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~H 73 (325)
T PRK06871 7 LQPTYQQITQAFQQ-------------GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNH 73 (325)
T ss_pred hHHHHHHHHHHHHc-------------CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 45556666655422 2345789999999999999999999987321
Q ss_pred --EEEEeccccchhhhhhHHHHHHHHHHHH----HhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhcccccc
Q 001746 792 --FISITGSTLTSKWFGDAEKLTKALFSFA----SKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSK 865 (1018)
Q Consensus 792 --fi~Is~seL~s~~~ge~ek~I~~lF~~A----~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~ 865 (1018)
|+.+.+.+ ++. -....|+.+-..+ ....--|++||++|.|.. ...|.||..|+.-
T Consensus 74 PD~~~i~p~~--~~~--I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~------------~AaNaLLKtLEEP--- 134 (325)
T PRK06871 74 PDFHILEPID--NKD--IGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTE------------AAANALLKTLEEP--- 134 (325)
T ss_pred CCEEEEcccc--CCC--CCHHHHHHHHHHHhhccccCCceEEEEechhhhCH------------HHHHHHHHHhcCC---
Confidence 22232210 010 1123344443333 333346999999999842 2356777777652
Q ss_pred CCCcEEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHH
Q 001746 866 ESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIF 911 (1018)
Q Consensus 866 ~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~ 911 (1018)
...+++|.+|+.++.|.+.+++|+ ..+.|+.|+.++..+.|...
T Consensus 135 -p~~~~fiL~t~~~~~llpTI~SRC-~~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 135 -RPNTYFLLQADLSAALLPTIYSRC-QTWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred -CCCeEEEEEECChHhCchHHHhhc-eEEeCCCCCHHHHHHHHHHH
Confidence 346788889999999999999999 67889999999888887764
No 222
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.65 E-value=1.8e-07 Score=110.07 Aligned_cols=152 Identities=18% Similarity=0.244 Sum_probs=86.7
Q ss_pred ccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEecc-ccchhhhhh
Q 001746 731 IGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA--NFISITGS-TLTSKWFGD 807 (1018)
Q Consensus 731 IgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~--~fi~Is~s-eL~s~~~ge 807 (1018)
|.|.+++++.+...+. ...+|||+||||||||++|++++..++. +|..+.+. ......+|.
T Consensus 22 i~gre~vI~lll~aal----------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~ 85 (498)
T PRK13531 22 LYERSHAIRLCLLAAL----------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 85 (498)
T ss_pred ccCcHHHHHHHHHHHc----------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCc
Confidence 4567777776655441 1246999999999999999999998743 44433322 111223332
Q ss_pred H-HHHH--HHHHHHHHhc---CCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhcccc-------ccCCCcEEEEE
Q 001746 808 A-EKLT--KALFSFASKL---APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR-------SKESQKILILG 874 (1018)
Q Consensus 808 ~-ek~I--~~lF~~A~k~---~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~-------~~~~~~VlVIa 874 (1018)
. -... ..-|...... ...+||+|||..+. ..+.+.|+..|..-. .+-..+++|++
T Consensus 86 l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ras------------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~A 153 (498)
T PRK13531 86 LSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAG------------PAILNTLLTAINERRFRNGAHEEKIPMRLLVTA 153 (498)
T ss_pred HHHhhhhhcCchhhhcCCccccccEEeecccccCC------------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEE
Confidence 1 0110 1122211111 23499999997653 344566666663211 11122444444
Q ss_pred ecCCCC---CCcHHHHhccCccccccCCC-HHHHHHHHHHH
Q 001746 875 ATNRPF---DLDDAVIRRLPRRIYVDLPD-AENRMKILRIF 911 (1018)
Q Consensus 875 TTN~p~---~LD~aLlrRFd~~I~V~lPd-~eeR~eILk~~ 911 (1018)
||... ...+++..||...+.++.|+ .++-.+++...
T Consensus 154 -TN~LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 154 -SNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred -CCCCcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 46432 24459999998889999996 45657777653
No 223
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.63 E-value=5.8e-07 Score=109.55 Aligned_cols=194 Identities=14% Similarity=0.186 Sum_probs=112.5
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEE-Eecc------
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFIS-ITGS------ 798 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~-Is~s------ 798 (1018)
.+++|+.|.++..+.++.++..... + ..+...++|+||||||||++++++|++++..++. ++..
T Consensus 81 ~~ldel~~~~~ki~~l~~~l~~~~~--------~-~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~ 151 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETWLKAQVL--------E-NAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQK 151 (637)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhccc--------c-cCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcccc
Confidence 5789999999999999887744210 1 2334559999999999999999999999865533 1111
Q ss_pred c-------c---chhhhhhHHHHHHHHHHHHHh----------cCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHh-
Q 001746 799 T-------L---TSKWFGDAEKLTKALFSFASK----------LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS- 857 (1018)
Q Consensus 799 e-------L---~s~~~ge~ek~I~~lF~~A~k----------~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~- 857 (1018)
+ + +..+ ......+..+...+.. ....|||||||+.+... . . ..+..++.
T Consensus 152 ~~~~~~~s~~~~~~~~-~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-~----~----~~lq~lLr~ 221 (637)
T TIGR00602 152 NDHKVTLSLESCFSNF-QSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-D----T----RALHEILRW 221 (637)
T ss_pred cccccchhhhhccccc-cchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-h----H----HHHHHHHHH
Confidence 0 0 0001 1222334444444431 24579999999987532 1 1 12333333
Q ss_pred hhccccccCCCcEEEEEecCCCC----------C----CcHHHHh--ccCccccccCCCHHHHHHHHHHHHhccCCC---
Q 001746 858 AWDGLRSKESQKILILGATNRPF----------D----LDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLE--- 918 (1018)
Q Consensus 858 ~Ldgl~~~~~~~VlVIaTTN~p~----------~----LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~l~--- 918 (1018)
.... .....+|+++|..+. . |.+++++ |. ..|.|.+.+.....+.|+.++..+...
T Consensus 222 ~~~e----~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~~~ 296 (637)
T TIGR00602 222 KYVS----IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKNGE 296 (637)
T ss_pred Hhhc----CCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhcccc
Confidence 1111 111223333332221 1 3467876 44 468899999999888888888764321
Q ss_pred -----CcccHHHHHHHccCCCHHHHHHHHHHHHH
Q 001746 919 -----SGFQFNELANATEGYSGSDLKNLCIAAAY 947 (1018)
Q Consensus 919 -----~dvdl~~LA~~TeGfSgaDL~~L~~~Aa~ 947 (1018)
....+..|+. .+.+|++.++..--+
T Consensus 297 ~~~~p~~~~l~~I~~----~s~GDiRsAIn~LQf 326 (637)
T TIGR00602 297 KIKVPKKTSVELLCQ----GCSGDIRSAINSLQF 326 (637)
T ss_pred ccccCCHHHHHHHHH----hCCChHHHHHHHHHH
Confidence 1124555555 355677776654333
No 224
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.63 E-value=4.7e-07 Score=111.21 Aligned_cols=195 Identities=15% Similarity=0.207 Sum_probs=112.4
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccch
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTS 802 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~s 802 (1018)
.+|+++.|.......+.+.+... .....+|||+|++||||+++|++|.+.. +.+|+.++|..+..
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~------------a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQA------------AKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHH------------hCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 46888888887777766655431 1223459999999999999999998876 47999999987642
Q ss_pred h-----hhhhH----HHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhcccc-c------cC
Q 001746 803 K-----WFGDA----EKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR-S------KE 866 (1018)
Q Consensus 803 ~-----~~ge~----ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~-~------~~ 866 (1018)
. ++|.. .......|+. ....+||||||+.|... +...|+..++.-. . ..
T Consensus 390 ~~~~~elfg~~~~~~~~~~~g~~~~---a~~GtL~ldei~~l~~~------------~Q~~Ll~~l~~~~~~~~~~~~~~ 454 (638)
T PRK11388 390 EALAEEFLGSDRTDSENGRLSKFEL---AHGGTLFLEKVEYLSPE------------LQSALLQVLKTGVITRLDSRRLI 454 (638)
T ss_pred HHHHHHhcCCCCcCccCCCCCceeE---CCCCEEEEcChhhCCHH------------HHHHHHHHHhcCcEEeCCCCceE
Confidence 1 12210 0000001222 23579999999998422 2233343333211 0 01
Q ss_pred CCcEEEEEecCCC-------CCCcHHHHhccCccccccCCCHHHHHH----HHHHHHhcc----CCCCccc---HHHHHH
Q 001746 867 SQKILILGATNRP-------FDLDDAVIRRLPRRIYVDLPDAENRMK----ILRIFLAHE----SLESGFQ---FNELAN 928 (1018)
Q Consensus 867 ~~~VlVIaTTN~p-------~~LD~aLlrRFd~~I~V~lPd~eeR~e----ILk~~L~~~----~l~~dvd---l~~LA~ 928 (1018)
...+.||+||+.. ..+.+.|..|+ ..+.+.+|...+|.+ ++..++... .....+. +..|..
T Consensus 455 ~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~ 533 (638)
T PRK11388 455 PVDVRVIATTTADLAMLVEQNRFSRQLYYAL-HAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVS 533 (638)
T ss_pred EeeEEEEEeccCCHHHHHhcCCChHHHhhhh-ceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHc
Confidence 1257788888764 23445555566 345677787777743 444444422 1111223 333333
Q ss_pred HccCCCHHHHHHHHHHHHHH
Q 001746 929 ATEGYSGSDLKNLCIAAAYR 948 (1018)
Q Consensus 929 ~TeGfSgaDL~~L~~~Aa~~ 948 (1018)
..=--+.++|+++++.|+..
T Consensus 534 y~WPGNvreL~~~l~~~~~~ 553 (638)
T PRK11388 534 YRWPGNDFELRSVIENLALS 553 (638)
T ss_pred CCCCChHHHHHHHHHHHHHh
Confidence 22112568999999887754
No 225
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.63 E-value=2.5e-07 Score=111.04 Aligned_cols=196 Identities=20% Similarity=0.271 Sum_probs=114.2
Q ss_pred CcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc
Q 001746 725 GVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLT 801 (1018)
Q Consensus 725 ~vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~ 801 (1018)
..+|+++.|.....+.+.+.+... . ....+|||+|++||||+++|+++.... +.+|+.++|..+.
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~-------A-----~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKL-------A-----MLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHH-------h-----CCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 467999999887776666655321 1 122459999999999999999987665 4699999998875
Q ss_pred hhhh-----hhHH-------HHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccc--cc---
Q 001746 802 SKWF-----GDAE-------KLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGL--RS--- 864 (1018)
Q Consensus 802 s~~~-----ge~e-------k~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl--~~--- 864 (1018)
.... |... ..-..+|+.| ...+||||||+.|... +...|+..+..- ..
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~a---~~GtL~LdeI~~L~~~------------~Q~~Ll~~l~~~~~~~~g~ 332 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQA---NGGSVLLDEIGEMSPR------------MQAKLLRFLNDGTFRRVGE 332 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhhc---CCCEEEEeChhhCCHH------------HHHHHHHHHhcCCcccCCC
Confidence 3221 1000 0011233333 3578999999998432 122333333221 11
Q ss_pred --cCCCcEEEEEecCCC-------CCCcHHHHhccCccccccCCCHHHHHH----HHHHHHh----ccCCC-CcccHHHH
Q 001746 865 --KESQKILILGATNRP-------FDLDDAVIRRLPRRIYVDLPDAENRMK----ILRIFLA----HESLE-SGFQFNEL 926 (1018)
Q Consensus 865 --~~~~~VlVIaTTN~p-------~~LD~aLlrRFd~~I~V~lPd~eeR~e----ILk~~L~----~~~l~-~dvdl~~L 926 (1018)
.....+.||+||+.+ ..+.+.|..|+. .+.+.+|...+|.+ ++..++. ..+.. ..+.-+.+
T Consensus 333 ~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~ 411 (520)
T PRK10820 333 DHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLN 411 (520)
T ss_pred CcceeeeeEEEEecCCCHHHHHHcCCccHHHHhhcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHH
Confidence 112356788888654 225567777874 36667777766653 3334443 22211 23333333
Q ss_pred HHHc-cCC--CHHHHHHHHHHHHHH
Q 001746 927 ANAT-EGY--SGSDLKNLCIAAAYR 948 (1018)
Q Consensus 927 A~~T-eGf--SgaDL~~L~~~Aa~~ 948 (1018)
..+. ..| +.++|++++..|+..
T Consensus 412 ~~L~~y~WPGNvreL~nvl~~a~~~ 436 (520)
T PRK10820 412 TVLTRYGWPGNVRQLKNAIYRALTQ 436 (520)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHHh
Confidence 3332 223 458999988888764
No 226
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.61 E-value=4.3e-07 Score=106.41 Aligned_cols=197 Identities=20% Similarity=0.265 Sum_probs=123.3
Q ss_pred ccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchh
Q 001746 727 RFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSK 803 (1018)
Q Consensus 727 tfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~s~ 803 (1018)
.+.+++|.....+++.+.+... .....+|||+|++||||..+|++|-... +.|||.++|..+...
T Consensus 139 ~~~~liG~S~am~~l~~~i~kv------------A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~ 206 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKV------------APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN 206 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHH------------hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH
Confidence 4567888888888888877441 2233569999999999999999998877 569999999877443
Q ss_pred hh-----hhH-------HHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhc-----cc--cc
Q 001746 804 WF-----GDA-------EKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWD-----GL--RS 864 (1018)
Q Consensus 804 ~~-----ge~-------ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ld-----gl--~~ 864 (1018)
.. |.. ...-...|+.| ....||||||..+.- +. ..-||..|. .+ ..
T Consensus 207 l~ESELFGhekGAFTGA~~~r~G~fE~A---~GGTLfLDEI~~mpl--------~~----Q~kLLRvLqe~~~~rvG~~~ 271 (464)
T COG2204 207 LLESELFGHEKGAFTGAITRRIGRFEQA---NGGTLFLDEIGEMPL--------EL----QVKLLRVLQEREFERVGGNK 271 (464)
T ss_pred HHHHHhhcccccCcCCcccccCcceeEc---CCceEEeeccccCCH--------HH----HHHHHHHHHcCeeEecCCCc
Confidence 21 110 00111233333 347999999998732 22 222333222 11 11
Q ss_pred cCCCcEEEEEecCCC-------CCCcHHHHhccCccccccCCCHHHHHH----HHHHHHhc----cCC-CCcccHHHHHH
Q 001746 865 KESQKILILGATNRP-------FDLDDAVIRRLPRRIYVDLPDAENRMK----ILRIFLAH----ESL-ESGFQFNELAN 928 (1018)
Q Consensus 865 ~~~~~VlVIaTTN~p-------~~LD~aLlrRFd~~I~V~lPd~eeR~e----ILk~~L~~----~~l-~~dvdl~~LA~ 928 (1018)
.-+-.|-||++||.. ..+-+.|.-|+ .++.+..|...+|.+ ++.+++.. .+. ...++-+.++.
T Consensus 272 ~i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRL-nV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~ 350 (464)
T COG2204 272 PIKVDVRIIAATNRDLEEEVAAGRFREDLYYRL-NVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAA 350 (464)
T ss_pred ccceeeEEEeecCcCHHHHHHcCCcHHHHHhhh-ccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHH
Confidence 223468899999874 22445555677 467788888877766 44555443 221 23455555555
Q ss_pred Hc-cCCC--HHHHHHHHHHHHHHHHH
Q 001746 929 AT-EGYS--GSDLKNLCIAAAYRPVQ 951 (1018)
Q Consensus 929 ~T-eGfS--gaDL~~L~~~Aa~~Air 951 (1018)
+. ..|. .++|+|+|+.++..+-.
T Consensus 351 L~~y~WPGNVREL~N~ver~~il~~~ 376 (464)
T COG2204 351 LLAYDWPGNVRELENVVERAVILSEG 376 (464)
T ss_pred HHhCCCChHHHHHHHHHHHHHhcCCc
Confidence 44 3444 48999999988876543
No 227
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.60 E-value=1.3e-06 Score=99.51 Aligned_cols=152 Identities=15% Similarity=0.181 Sum_probs=99.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCC------------------------cEEEEecccc-chhhhhhHHHHHHHHH
Q 001746 762 RPCKGILLFGPPGTGKTLLAKALATEAGA------------------------NFISITGSTL-TSKWFGDAEKLTKALF 816 (1018)
Q Consensus 762 ~p~~gVLL~GPPGTGKT~LArAIA~elg~------------------------~fi~Is~seL-~s~~~ge~ek~I~~lF 816 (1018)
+.+..+||+||+|+||+++|.++|+.+-+ .+..+.+..- ..-.+.+....+..+.
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~ 101 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLY 101 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHh
Confidence 44678999999999999999999998732 1222322110 0011223333333333
Q ss_pred HHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHhccCccccc
Q 001746 817 SFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYV 896 (1018)
Q Consensus 817 ~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V 896 (1018)
........-|++||++|.|. ....|.||..|+. +..++++|.+|+.++.|.+.+++|+. .+.|
T Consensus 102 ~~~~~g~~kV~iI~~ae~m~------------~~AaNaLLKtLEE----Pp~~t~fiL~t~~~~~lLpTIrSRCq-~~~~ 164 (334)
T PRK07993 102 EHARLGGAKVVWLPDAALLT------------DAAANALLKTLEE----PPENTWFFLACREPARLLATLRSRCR-LHYL 164 (334)
T ss_pred hccccCCceEEEEcchHhhC------------HHHHHHHHHHhcC----CCCCeEEEEEECChhhChHHHHhccc-cccC
Confidence 33333445699999999984 2235677777765 24468888899999999999999994 6899
Q ss_pred cCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHccCCC
Q 001746 897 DLPDAENRMKILRIFLAHESLESGFQFNELANATEGYS 934 (1018)
Q Consensus 897 ~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeGfS 934 (1018)
+.|+.++..+.|... .+++ ......++..+.|-.
T Consensus 165 ~~~~~~~~~~~L~~~---~~~~-~~~a~~~~~la~G~~ 198 (334)
T PRK07993 165 APPPEQYALTWLSRE---VTMS-QDALLAALRLSAGAP 198 (334)
T ss_pred CCCCHHHHHHHHHHc---cCCC-HHHHHHHHHHcCCCH
Confidence 999988888777532 1222 223445566666633
No 228
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.59 E-value=2e-06 Score=95.88 Aligned_cols=176 Identities=20% Similarity=0.288 Sum_probs=107.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccccch------hh----------hhhHHHHHHHHHHHH
Q 001746 765 KGILLFGPPGTGKTLLAKALATEA---------GANFISITGSTLTS------KW----------FGDAEKLTKALFSFA 819 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~el---------g~~fi~Is~seL~s------~~----------~ge~ek~I~~lF~~A 819 (1018)
.++||+|++|+|||++++.++... .+|++.+.++.--+ .. .....+.-..+....
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~ll 141 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLL 141 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHH
Confidence 469999999999999999998754 24777776543210 00 011233333444555
Q ss_pred HhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecC--CCCCCcHHHHhccCcccccc
Q 001746 820 SKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATN--RPFDLDDAVIRRLPRRIYVD 897 (1018)
Q Consensus 820 ~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN--~p~~LD~aLlrRFd~~I~V~ 897 (1018)
+...+-+|+|||++.++... ....+ +++..|+.+.+.-.-+++.+||-. ..-.-|+.+.+||. .+.+|
T Consensus 142 r~~~vrmLIIDE~H~lLaGs-----~~~qr----~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~-~~~Lp 211 (302)
T PF05621_consen 142 RRLGVRMLIIDEFHNLLAGS-----YRKQR----EFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLASRFE-PFELP 211 (302)
T ss_pred HHcCCcEEEeechHHHhccc-----HHHHH----HHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHhccC-CccCC
Confidence 67788999999999986432 12223 333333333222233566666542 22346788999994 44555
Q ss_pred C--CCHHHHHHHHHHHHhccCCC--Cccc----HHHHHHHccCCCHHHHHHHHHHHHHHHHHH
Q 001746 898 L--PDAENRMKILRIFLAHESLE--SGFQ----FNELANATEGYSGSDLKNLCIAAAYRPVQE 952 (1018)
Q Consensus 898 l--Pd~eeR~eILk~~L~~~~l~--~dvd----l~~LA~~TeGfSgaDL~~L~~~Aa~~Airr 952 (1018)
. ++ ++-..++..+-...++. +... ...|-.+++|.. ++|..++..|+..|++.
T Consensus 212 ~W~~d-~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~i-G~l~~ll~~aA~~AI~s 272 (302)
T PF05621_consen 212 RWELD-EEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLI-GELSRLLNAAAIAAIRS 272 (302)
T ss_pred CCCCC-cHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCch-HHHHHHHHHHHHHHHhc
Confidence 4 33 34455666665544442 2222 345666788855 67999999999998875
No 229
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=4.8e-07 Score=100.26 Aligned_cols=74 Identities=26% Similarity=0.378 Sum_probs=61.6
Q ss_pred ccCCCcccccccccccccchhhHHHHHHhhhhcccCccchhhcccccCCCCCceeeccCCchhHHHHHHHHHHHHhhCCc
Q 001746 171 IVPWEKINISWDTFPYYINENTKSLLVECVGSHLKHKKFTATFGARLTSSSGRILLRSVPGTELYRERLIRALARELQVP 250 (1018)
Q Consensus 171 v~~~~~~~vsf~~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~~l~~~~~riLL~~~~gsE~yqe~L~kALA~~~~a~ 250 (1018)
++|+.+..=-||+.=|= -+-|+-|++-|.+-|+-.+. +-..+|-+-++=|||.|||| ..++.|.||||+++-++
T Consensus 131 ~LPa~eF~glWEsLiyd--s~lK~~ll~Ya~s~l~fsek--~vntnlIt~NRliLlhGPPG--TGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 131 YLPAAEFDGLWESLIYD--SNLKERLLSYAASALLFSEK--KVNTNLITWNRLILLHGPPG--TGKTSLCKALAQKLSIR 204 (423)
T ss_pred eccchhhhhhHHHHhhc--ccHHHHHHHHHHHHHHHHhc--CCCCceeeeeeEEEEeCCCC--CChhHHHHHHHHhheee
Confidence 45555555567776555 67899999999989988775 56689999999999999999 89999999999999887
No 230
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.56 E-value=2.6e-08 Score=98.10 Aligned_cols=108 Identities=30% Similarity=0.438 Sum_probs=57.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc-cc-chhhhhhH----HHHHHHHHHHHHhcC---CeEEEecchhhhh
Q 001746 766 GILLFGPPGTGKTLLAKALATEAGANFISITGS-TL-TSKWFGDA----EKLTKALFSFASKLA---PVIIFVDEVDSLL 836 (1018)
Q Consensus 766 gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~s-eL-~s~~~ge~----ek~I~~lF~~A~k~~---PsIIfIDEID~L~ 836 (1018)
+|||+|+||+|||++|+++|+.+|..|..|.+. ++ .++..|.. .. ..|.. ... ..|+++|||.+..
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~---~~f~~--~~GPif~~ill~DEiNrap 75 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQET---GEFEF--RPGPIFTNILLADEINRAP 75 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTT---TEEEE--EE-TT-SSEEEEETGGGS-
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCC---CeeEe--ecChhhhceeeecccccCC
Confidence 489999999999999999999999999887653 23 22222210 00 00000 001 2599999998863
Q ss_pred hccCCCcchHHHHHHHHHHHhhhc-------cccccCCCcEEEEEecCCCC-----CCcHHHHhcc
Q 001746 837 GARGGAFEHEATRRMRNEFMSAWD-------GLRSKESQKILILGATNRPF-----DLDDAVIRRL 890 (1018)
Q Consensus 837 ~~r~~~~~~e~~~~il~~LL~~Ld-------gl~~~~~~~VlVIaTTN~p~-----~LD~aLlrRF 890 (1018)
+ ++.+.++..|. +..-.-..+++||||-|..+ .|+++++.||
T Consensus 76 p------------ktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF 129 (131)
T PF07726_consen 76 P------------KTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRF 129 (131)
T ss_dssp H------------HHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTS
T ss_pred H------------HHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhccc
Confidence 3 33444544443 22222345789999999876 4899999998
No 231
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.56 E-value=3.4e-07 Score=99.84 Aligned_cols=107 Identities=21% Similarity=0.268 Sum_probs=67.8
Q ss_pred cccccCCCCCCcccccccCh----HHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh--
Q 001746 715 VSAVVPPGEIGVRFDDIGAL----EDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA-- 788 (1018)
Q Consensus 715 ~~~ii~~~e~~vtfdDIgGl----e~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~el-- 788 (1018)
....+++.....+|++.... ..+...+.+++.. |. ....+++|+|+||||||+|+.+||+++
T Consensus 58 ~~s~i~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~-------~~-----~~~~~~~l~G~~GtGKThLa~aia~~l~~ 125 (244)
T PRK07952 58 NRSGIRPLHQNCSFENYRVECEGQMNALSKARQYVEE-------FD-----GNIASFIFSGKPGTGKNHLAAAICNELLL 125 (244)
T ss_pred HHcCCCccccCCccccccCCCchHHHHHHHHHHHHHh-------hc-----cCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34445665667788887432 2233444443321 11 112479999999999999999999998
Q ss_pred -CCcEEEEeccccchhhhhhH---HHHHHHHHHHHHhcCCeEEEecchhhh
Q 001746 789 -GANFISITGSTLTSKWFGDA---EKLTKALFSFASKLAPVIIFVDEVDSL 835 (1018)
Q Consensus 789 -g~~fi~Is~seL~s~~~ge~---ek~I~~lF~~A~k~~PsIIfIDEID~L 835 (1018)
|..++.++.+++........ ......++.... ...+|+|||++..
T Consensus 126 ~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 126 RGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred cCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCC
Confidence 77888888888765433221 111223333322 5689999999875
No 232
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=4.2e-07 Score=102.87 Aligned_cols=97 Identities=12% Similarity=0.200 Sum_probs=69.9
Q ss_pred HHHHHHHHHhh-CCCeEEEEcCchhh-hhhccCcchHHHHHHHHHHHHhcC---CCCEEEEeeccCCCCCcccccccccc
Q 001746 472 AMEALCEVLHS-TQPLIVYFPDSSLW-LSRAVPRCNRKEFVRKVEEMFDQL---SGPVVLICGQNKNETGPKEKEKFTMI 546 (1018)
Q Consensus 472 ~i~~L~e~~~~-~~p~Iiff~did~~-~~~s~~~~~~~~~~s~~~~~l~~l---~g~v~vi~~~~~~~~~~~~~~~~~~~ 546 (1018)
.|..||.-+++ ..-+++|+||.|-+ ..|++.. ..+.--|.|-++|=.- +-.+|++
T Consensus 430 kiH~lFDWakkS~rGLllFIDEADAFLceRnkty-mSEaqRsaLNAlLfRTGdqSrdivLv------------------- 489 (630)
T KOG0742|consen 430 KIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTY-MSEAQRSALNALLFRTGDQSRDIVLV------------------- 489 (630)
T ss_pred HHHHHHHHHhhcccceEEEehhhHHHHHHhchhh-hcHHHHHHHHHHHHHhcccccceEEE-------------------
Confidence 78888888887 58899999999995 5555422 2223344455544222 2222222
Q ss_pred ccccccccCCCCchhhhhcccccCCCcchHHHHhccccEEEEcCCChHHHHHHHHHHHHHH
Q 001746 547 LPNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYNLFTNVLSIHPPKEEDLLRTFNKQVEED 607 (1018)
Q Consensus 547 ~~~~~~~~~~~~~~~~LvIGmTnR~d~iD~aL~rrFe~~ieI~LPdeegRl~Il~iht~~~ 607 (1018)
=+||||..+|-|+..|++..+|||||-+|.|..+|+..+.+.
T Consensus 490 -------------------lAtNrpgdlDsAV~DRide~veFpLPGeEERfkll~lYlnky 531 (630)
T KOG0742|consen 490 -------------------LATNRPGDLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKY 531 (630)
T ss_pred -------------------eccCCccchhHHHHhhhhheeecCCCChHHHHHHHHHHHHHH
Confidence 257788889999999999999999999999999999877664
No 233
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.55 E-value=6.4e-07 Score=92.48 Aligned_cols=100 Identities=25% Similarity=0.436 Sum_probs=60.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhh-----hhhHH-------HHHHHHHHHHHhcCCeEEEe
Q 001746 765 KGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKW-----FGDAE-------KLTKALFSFASKLAPVIIFV 829 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~s~~-----~ge~e-------k~I~~lF~~A~k~~PsIIfI 829 (1018)
.+|||+|++||||+++|++|.+.. +.||+.++|+.+.... +|... ..-..+|..| ...+|||
T Consensus 23 ~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A---~~GtL~L 99 (168)
T PF00158_consen 23 LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQA---NGGTLFL 99 (168)
T ss_dssp S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHT---TTSEEEE
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeec---cceEEee
Confidence 569999999999999999998876 5799999998874332 11100 0011344444 3489999
Q ss_pred cchhhhhhccCCCcchHHHHHHHHHHHhhhccc-------cccCCCcEEEEEecCCC
Q 001746 830 DEVDSLLGARGGAFEHEATRRMRNEFMSAWDGL-------RSKESQKILILGATNRP 879 (1018)
Q Consensus 830 DEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl-------~~~~~~~VlVIaTTN~p 879 (1018)
|||+.|.. .+...|+..|+.- .....-.+.||+||+.+
T Consensus 100 d~I~~L~~------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 100 DEIEDLPP------------ELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD 144 (168)
T ss_dssp ETGGGS-H------------HHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-
T ss_pred cchhhhHH------------HHHHHHHHHHhhchhccccccccccccceEEeecCcC
Confidence 99999842 2233444444311 01112378899999863
No 234
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.55 E-value=4.1e-07 Score=105.77 Aligned_cols=204 Identities=18% Similarity=0.211 Sum_probs=120.3
Q ss_pred CCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 001746 724 IGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTL 800 (1018)
Q Consensus 724 ~~vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL 800 (1018)
+...+..|+|......++.+.|... .....+|||.|..||||-.+|++|-+.+ +.||++++|+.+
T Consensus 218 ~~~~~~~iIG~S~am~~ll~~i~~V------------A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAl 285 (550)
T COG3604 218 VVLEVGGIIGRSPAMRQLLKEIEVV------------AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAAL 285 (550)
T ss_pred hhcccccceecCHHHHHHHHHHHHH------------hcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeecccc
Confidence 3567778999998888888877552 2233569999999999999999998887 579999999877
Q ss_pred chhhhhh-HHHHHHHHHHHHHhcC--------CeEEEecchhhhhhccCCCcchHHHHHHHHHHH-hhhccccc--cCCC
Q 001746 801 TSKWFGD-AEKLTKALFSFASKLA--------PVIIFVDEVDSLLGARGGAFEHEATRRMRNEFM-SAWDGLRS--KESQ 868 (1018)
Q Consensus 801 ~s~~~ge-~ek~I~~lF~~A~k~~--------PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL-~~Ldgl~~--~~~~ 868 (1018)
......+ .=...+..|.-|.... ...||+|||..|-- ....+++-.|. ..+..+-. .-..
T Consensus 286 PesLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL--------~lQaKLLRvLQegEieRvG~~r~ikV 357 (550)
T COG3604 286 PESLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELPL--------ALQAKLLRVLQEGEIERVGGDRTIKV 357 (550)
T ss_pred chHHHHHHHhcccccccccchhccCcceeecCCCeEechhhccCCH--------HHHHHHHHHHhhcceeecCCCceeEE
Confidence 5432211 1112334444443322 36999999988732 22222222221 11222211 1223
Q ss_pred cEEEEEecCCCCCCcHHHHh-ccC-------ccccccCCCHHHHHH----HHHHHHhc----cCC-C---CcccHHHHHH
Q 001746 869 KILILGATNRPFDLDDAVIR-RLP-------RRIYVDLPDAENRMK----ILRIFLAH----ESL-E---SGFQFNELAN 928 (1018)
Q Consensus 869 ~VlVIaTTN~p~~LD~aLlr-RFd-------~~I~V~lPd~eeR~e----ILk~~L~~----~~l-~---~dvdl~~LA~ 928 (1018)
.|-|||+||+ +|..++.. +|- .++.+..|...+|.. +.++++.+ .+. . +...++.|.+
T Consensus 358 DVRiIAATNR--DL~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~ 435 (550)
T COG3604 358 DVRVIAATNR--DLEEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSS 435 (550)
T ss_pred EEEEEeccch--hHHHHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHc
Confidence 5889999998 55555554 221 233455576666544 33333332 222 1 1112333333
Q ss_pred HccCCCHHHHHHHHHHHHHHH
Q 001746 929 ATEGYSGSDLKNLCIAAAYRP 949 (1018)
Q Consensus 929 ~TeGfSgaDL~~L~~~Aa~~A 949 (1018)
..---+.++|++++.+|+..|
T Consensus 436 y~wPGNVRELen~veRavlla 456 (550)
T COG3604 436 YEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred CCCCCcHHHHHHHHHHHHHHh
Confidence 322225699999999999876
No 235
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.54 E-value=5.7e-07 Score=102.50 Aligned_cols=133 Identities=19% Similarity=0.204 Sum_probs=90.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------------------EEEEeccccc---------------
Q 001746 762 RPCKGILLFGPPGTGKTLLAKALATEAGAN-------------------------FISITGSTLT--------------- 801 (1018)
Q Consensus 762 ~p~~gVLL~GPPGTGKT~LArAIA~elg~~-------------------------fi~Is~seL~--------------- 801 (1018)
+.+..+||+||+|+||+++|+++|+.+.+. ++.+.+....
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 445789999999999999999999987432 1222211000
Q ss_pred ---hh----h-hhhHHHHHHHHHHHHHh----cCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCc
Q 001746 802 ---SK----W-FGDAEKLTKALFSFASK----LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQK 869 (1018)
Q Consensus 802 ---s~----~-~ge~ek~I~~lF~~A~k----~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~ 869 (1018)
++ . ..-.-..|+.+...+.. ...-|++||++|.+. ....|.||..|+. +...
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~------------~~AaNaLLKtLEE----Pp~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN------------VAAANALLKTLEE----PPPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC------------HHHHHHHHHHhcC----CCcC
Confidence 00 0 00012334444444322 233599999999984 2235677777765 3456
Q ss_pred EEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHH
Q 001746 870 ILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIF 911 (1018)
Q Consensus 870 VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~ 911 (1018)
+++|.+|+.++.|.+.+++|+ ..+.|++|+.++..++|...
T Consensus 163 t~fiL~t~~~~~LLpTI~SRc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILSRC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cEEEEEECChhhCcHHHHhcC-EEEEecCCCHHHHHHHHHHc
Confidence 888889999999999999999 78899999999988888653
No 236
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.54 E-value=2.3e-06 Score=96.81 Aligned_cols=169 Identities=19% Similarity=0.199 Sum_probs=106.5
Q ss_pred hHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---------------------E
Q 001746 734 LEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN---------------------F 792 (1018)
Q Consensus 734 le~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~---------------------f 792 (1018)
+..+.+.+...+.. -+-+..+||+||+|+||+.+|.++|+.+-+. +
T Consensus 9 ~~~~~~~l~~~~~~-------------~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~ 75 (319)
T PRK08769 9 QQRAYDQTVAALDA-------------GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDL 75 (319)
T ss_pred HHHHHHHHHHHHHc-------------CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCE
Confidence 55666666665532 2345679999999999999999999877321 2
Q ss_pred EEEe--ccccchhh-hhhHHHHHHHHHHHHHhcC----CeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhcccccc
Q 001746 793 ISIT--GSTLTSKW-FGDAEKLTKALFSFASKLA----PVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSK 865 (1018)
Q Consensus 793 i~Is--~seL~s~~-~ge~ek~I~~lF~~A~k~~----PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~ 865 (1018)
+.+. +..-..+. ..-....|+.+...+...+ --|++||++|.|. ....|.||..|+.-
T Consensus 76 ~~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~------------~~AaNaLLKtLEEP--- 140 (319)
T PRK08769 76 QLVSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAIN------------RAACNALLKTLEEP--- 140 (319)
T ss_pred EEEecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhC------------HHHHHHHHHHhhCC---
Confidence 2221 11000000 0011334555555544332 3599999999983 22356777777553
Q ss_pred CCCcEEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHccCCCHHH
Q 001746 866 ESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSD 937 (1018)
Q Consensus 866 ~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeGfSgaD 937 (1018)
...+++|.+|+.++.|.+.+++|+ ..+.|+.|+.++-..+|... ++. ..+...++..+.|-.+..
T Consensus 141 -p~~~~fiL~~~~~~~lLpTIrSRC-q~i~~~~~~~~~~~~~L~~~----~~~-~~~a~~~~~l~~G~p~~A 205 (319)
T PRK08769 141 -SPGRYLWLISAQPARLPATIRSRC-QRLEFKLPPAHEALAWLLAQ----GVS-ERAAQEALDAARGHPGLA 205 (319)
T ss_pred -CCCCeEEEEECChhhCchHHHhhh-eEeeCCCcCHHHHHHHHHHc----CCC-hHHHHHHHHHcCCCHHHH
Confidence 345777778888999999999999 67889999998877777532 322 223445666777644433
No 237
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.53 E-value=5.3e-07 Score=107.53 Aligned_cols=146 Identities=24% Similarity=0.306 Sum_probs=86.1
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC----------------
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAG---------------- 789 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg---------------- 789 (1018)
..|+|+.|...+++.+.-.+ ....+++|.||||||||+++++++..+.
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa----------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~ 252 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA----------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSL 252 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc----------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccc
Confidence 47899999988877665432 2236799999999999999999986431
Q ss_pred ------------CcEEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHh
Q 001746 790 ------------ANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMS 857 (1018)
Q Consensus 790 ------------~~fi~Is~seL~s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~ 857 (1018)
.||.....+......+|.....-...+..| ...||||||++.+. ..++..|+.
T Consensus 253 ~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA---~~GvLfLDEi~e~~------------~~~~~~L~~ 317 (499)
T TIGR00368 253 VGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLA---HNGVLFLDELPEFK------------RSVLDALRE 317 (499)
T ss_pred hhhhccccccccCCccccccccchhhhhCCccccchhhhhcc---CCCeEecCChhhCC------------HHHHHHHHH
Confidence 122222211111111111100111123333 34899999999863 223334444
Q ss_pred hhccc---------cccCCCcEEEEEecCCC-----C------------------CCcHHHHhccCccccccCCCHH
Q 001746 858 AWDGL---------RSKESQKILILGATNRP-----F------------------DLDDAVIRRLPRRIYVDLPDAE 902 (1018)
Q Consensus 858 ~Ldgl---------~~~~~~~VlVIaTTN~p-----~------------------~LD~aLlrRFd~~I~V~lPd~e 902 (1018)
.|+.- ......++.+|+++|.- . .+...|++||+..+.++.++.+
T Consensus 318 ~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~ 394 (499)
T TIGR00368 318 PIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPE 394 (499)
T ss_pred HHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHH
Confidence 33221 11112468899998852 1 4778888999988888776654
No 238
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.53 E-value=7.3e-07 Score=91.33 Aligned_cols=133 Identities=23% Similarity=0.290 Sum_probs=85.5
Q ss_pred ChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC----------------------
Q 001746 733 ALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA---------------------- 790 (1018)
Q Consensus 733 Gle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~---------------------- 790 (1018)
|.+++.+.|...+.. .+.+..+||+||+|+||+++|.++|+.+-.
T Consensus 1 gq~~~~~~L~~~~~~-------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~ 67 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNH 67 (162)
T ss_dssp S-HHHHHHHHHHHHC-------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-C
T ss_pred CcHHHHHHHHHHHHc-------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccC
Confidence 567788888877643 234567999999999999999999998721
Q ss_pred -cEEEEeccccchhhhhhHHHHHHHHHHHHHh----cCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhcccccc
Q 001746 791 -NFISITGSTLTSKWFGDAEKLTKALFSFASK----LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSK 865 (1018)
Q Consensus 791 -~fi~Is~seL~s~~~ge~ek~I~~lF~~A~k----~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~ 865 (1018)
.++.+....-... -....++.+...+.. ...-|++|||+|.|. ....+.|+..|+..
T Consensus 68 ~d~~~~~~~~~~~~---i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~------------~~a~NaLLK~LEep--- 129 (162)
T PF13177_consen 68 PDFIIIKPDKKKKS---IKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT------------EEAQNALLKTLEEP--- 129 (162)
T ss_dssp TTEEEEETTTSSSS---BSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-------------HHHHHHHHHHHHST---
T ss_pred cceEEEecccccch---hhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh------------HHHHHHHHHHhcCC---
Confidence 2344443322000 012344444444432 345699999999984 23456777777653
Q ss_pred CCCcEEEEEecCCCCCCcHHHHhccCccccccC
Q 001746 866 ESQKILILGATNRPFDLDDAVIRRLPRRIYVDL 898 (1018)
Q Consensus 866 ~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~l 898 (1018)
...+.+|.+|+.++.|-+.+++|+ ..+.++.
T Consensus 130 -p~~~~fiL~t~~~~~il~TI~SRc-~~i~~~~ 160 (162)
T PF13177_consen 130 -PENTYFILITNNPSKILPTIRSRC-QVIRFRP 160 (162)
T ss_dssp -TTTEEEEEEES-GGGS-HHHHTTS-EEEEE--
T ss_pred -CCCEEEEEEECChHHChHHHHhhc-eEEecCC
Confidence 356888889999999999999998 4555544
No 239
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.51 E-value=1.8e-06 Score=98.55 Aligned_cols=63 Identities=21% Similarity=0.253 Sum_probs=48.8
Q ss_pred ccc-cccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-------cEEEEec
Q 001746 727 RFD-DIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA-------NFISITG 797 (1018)
Q Consensus 727 tfd-DIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~-------~fi~Is~ 797 (1018)
-|+ ++.|+++.+.++.+++..... +.-...+.++|+||||+|||+||++||+.++. +++.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a~--------g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAAQ--------GLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 466 899999999999887754321 11223466899999999999999999999965 7777755
No 240
>PRK08181 transposase; Validated
Probab=98.49 E-value=2.5e-07 Score=102.28 Aligned_cols=71 Identities=24% Similarity=0.315 Sum_probs=50.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhhH-HHHHHHHHHHHHhcCCeEEEecchhhhh
Q 001746 764 CKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGDA-EKLTKALFSFASKLAPVIIFVDEVDSLL 836 (1018)
Q Consensus 764 ~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~ge~-ek~I~~lF~~A~k~~PsIIfIDEID~L~ 836 (1018)
..+++|+||||||||+||.|+|+++ |..+++++..+++....... .......+... ..+.+|+|||++.+.
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~ 180 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVT 180 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEecccccc
Confidence 3579999999999999999999866 77888888888776542211 11122333322 356899999998764
No 241
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.45 E-value=3.5e-06 Score=95.30 Aligned_cols=144 Identities=15% Similarity=0.137 Sum_probs=97.4
Q ss_pred hHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-----------------------
Q 001746 734 LEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGA----------------------- 790 (1018)
Q Consensus 734 le~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~----------------------- 790 (1018)
+....+.+...+.. .+.+..+||+||.|+||+.+|.++|+.+-+
T Consensus 8 l~~~~~~l~~~~~~-------------~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HP 74 (319)
T PRK06090 8 LVPVWQNWKAGLDA-------------GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHP 74 (319)
T ss_pred HHHHHHHHHHHHHc-------------CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCC
Confidence 56666777666532 244578999999999999999999998722
Q ss_pred cEEEEeccccchhhhhhHHHHHHHHHHHHHh----cCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccC
Q 001746 791 NFISITGSTLTSKWFGDAEKLTKALFSFASK----LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKE 866 (1018)
Q Consensus 791 ~fi~Is~seL~s~~~ge~ek~I~~lF~~A~k----~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~ 866 (1018)
.|+.+.+.. .++.. ....|+.+-..+.. ..--|++||++|.+. ....|.||..++.-
T Consensus 75 D~~~i~p~~-~~~~I--~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~------------~~AaNaLLKtLEEP---- 135 (319)
T PRK06090 75 DLHVIKPEK-EGKSI--TVEQIRQCNRLAQESSQLNGYRLFVIEPADAMN------------ESASNALLKTLEEP---- 135 (319)
T ss_pred CEEEEecCc-CCCcC--CHHHHHHHHHHHhhCcccCCceEEEecchhhhC------------HHHHHHHHHHhcCC----
Confidence 133333211 00000 12233444333322 234699999999984 22356777777653
Q ss_pred CCcEEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHH
Q 001746 867 SQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRI 910 (1018)
Q Consensus 867 ~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~ 910 (1018)
..++++|.+|+.++.|-+.+++|+ ..+.|+.|+.++..+.+..
T Consensus 136 p~~t~fiL~t~~~~~lLpTI~SRC-q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 136 APNCLFLLVTHNQKRLLPTIVSRC-QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred CCCeEEEEEECChhhChHHHHhcc-eeEeCCCCCHHHHHHHHHH
Confidence 346888888899999999999999 6789999999988887754
No 242
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.43 E-value=1.3e-06 Score=102.26 Aligned_cols=166 Identities=21% Similarity=0.316 Sum_probs=98.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhhHHHHHHHHHHH---------------HHhcCCeE
Q 001746 765 KGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGDAEKLTKALFSF---------------ASKLAPVI 826 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~ge~ek~I~~lF~~---------------A~k~~PsI 826 (1018)
.+++|+|++||||+++|+++.... +.+|+.++|..+...... ..+|.. .......+
T Consensus 163 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~------~~lfg~~~~~~~~~~~~~~g~~~~a~~gt 236 (445)
T TIGR02915 163 ITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLE------SELFGYEKGAFTGAVKQTLGKIEYAHGGT 236 (445)
T ss_pred CCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHH------HHhcCCCCCCcCCCccCCCCceeECCCCE
Confidence 569999999999999999998876 468999999887432211 122221 11124579
Q ss_pred EEecchhhhhhccCCCcchHHHHHHHHHHHhhhcccc-------ccCCCcEEEEEecCCC-------CCCcHHHHhccCc
Q 001746 827 IFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR-------SKESQKILILGATNRP-------FDLDDAVIRRLPR 892 (1018)
Q Consensus 827 IfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~-------~~~~~~VlVIaTTN~p-------~~LD~aLlrRFd~ 892 (1018)
||||||+.|... +...|+..+..-. ......+.||+||+.. ..+.+.|..|+ .
T Consensus 237 l~l~~i~~l~~~------------~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l-~ 303 (445)
T TIGR02915 237 LFLDEIGDLPLN------------LQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFYRI-A 303 (445)
T ss_pred EEEechhhCCHH------------HHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHHHh-c
Confidence 999999998422 2233333332110 1111257788888765 34566677777 3
Q ss_pred cccccCCCHHHHHH----HHHHHHhcc----CCC-Cccc---HHHHHHHccCCCHHHHHHHHHHHHHHH
Q 001746 893 RIYVDLPDAENRMK----ILRIFLAHE----SLE-SGFQ---FNELANATEGYSGSDLKNLCIAAAYRP 949 (1018)
Q Consensus 893 ~I~V~lPd~eeR~e----ILk~~L~~~----~l~-~dvd---l~~LA~~TeGfSgaDL~~L~~~Aa~~A 949 (1018)
.+.+.+|...+|.+ +++.++... +.. ..++ +..|....=--+.++|++++..|+..+
T Consensus 304 ~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~ 372 (445)
T TIGR02915 304 EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMA 372 (445)
T ss_pred cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 46677787777765 444444322 111 1233 333333221225689999998887643
No 243
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.39 E-value=4.7e-06 Score=104.69 Aligned_cols=98 Identities=12% Similarity=0.151 Sum_probs=63.9
Q ss_pred HHHHhhCCCeEEEEcCchhhhhhccCcchHHHHHHHHHHHHhcCCCCEEEEeeccCCCCCccccccccccccccccccCC
Q 001746 477 CEVLHSTQPLIVYFPDSSLWLSRAVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPNFGRLAKL 556 (1018)
Q Consensus 477 ~e~~~~~~p~Iiff~did~~~~~s~~~~~~~~~~s~~~~~l~~l~g~v~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (1018)
|..+...+| ||||||||++..+ .|...++.|..+||...... + .|. ....
T Consensus 408 l~~~~~~~~-villDEidk~~~~-----~~~~~~~aLl~~ld~~~~~~-f------~d~-----------------~~~~ 457 (775)
T TIGR00763 408 LKKAKTKNP-LFLLDEIDKIGSS-----FRGDPASALLEVLDPEQNNA-F------SDH-----------------YLDV 457 (775)
T ss_pred HHHhCcCCC-EEEEechhhcCCc-----cCCCHHHHHHHhcCHHhcCc-c------ccc-----------------cCCc
Confidence 445555667 7899999998643 12233455555555321110 1 010 0011
Q ss_pred CCch-hhhhcccccCCCcchHHHHhccccEEEEcCCChHHHHHHHHHHHH
Q 001746 557 PLPL-QRLTEGLKATKRSDDNEIYNLFTNVLSIHPPKEEDLLRTFNKQVE 605 (1018)
Q Consensus 557 ~~~~-~~LvIGmTnR~d~iD~aL~rrFe~~ieI~LPdeegRl~Il~iht~ 605 (1018)
|..+ +.++|++||+.+.|+++|++||+ .|+|+.|+.+.+.+|++.|+.
T Consensus 458 ~~d~s~v~~I~TtN~~~~i~~~L~~R~~-vi~~~~~~~~e~~~I~~~~l~ 506 (775)
T TIGR00763 458 PFDLSKVIFIATANSIDTIPRPLLDRME-VIELSGYTEEEKLEIAKKYLI 506 (775)
T ss_pred eeccCCEEEEEecCCchhCCHHHhCCee-EEecCCCCHHHHHHHHHHHHH
Confidence 1122 24678899999999999999996 689999999999999999874
No 244
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.38 E-value=2.5e-06 Score=95.07 Aligned_cols=99 Identities=9% Similarity=0.116 Sum_probs=68.3
Q ss_pred HHHHHHHHhhCCCeEEEEcCchhhhhhccCcchHHHHHHHHHHHHhcCCCCEEEEeeccCCCCCcccccccccccccccc
Q 001746 473 MEALCEVLHSTQPLIVYFPDSSLWLSRAVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPNFGR 552 (1018)
Q Consensus 473 i~~L~e~~~~~~p~Iiff~did~~~~~s~~~~~~~~~~s~~~~~l~~l~g~v~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (1018)
+..+|+.+ .+-||||||++.+..+.-......++.+.|...|+.-.+.++||++++... .+.
T Consensus 113 ~~~~~~~a---~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~---~~~------------ 174 (284)
T TIGR02880 113 TKEILKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDR---MDS------------ 174 (284)
T ss_pred HHHHHHHc---cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHH---HHH------------
Confidence 34566655 457999999998743211112234566777788887777888886654210 000
Q ss_pred ccCCCCchhhhhcccccCCCcchHHHHhccccEEEEcCCChHHHHHHHHHHHHHH
Q 001746 553 LAKLPLPLQRLTEGLKATKRSDDNEIYNLFTNVLSIHPPKEEDLLRTFNKQVEED 607 (1018)
Q Consensus 553 ~~~~~~~~~~LvIGmTnR~d~iD~aL~rrFe~~ieI~LPdeegRl~Il~iht~~~ 607 (1018)
+ -.++++|++||+.+++||+++.+.+.+|++.++++.
T Consensus 175 -------~-----------~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~ 211 (284)
T TIGR02880 175 -------F-----------FESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQ 211 (284)
T ss_pred -------H-----------HhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHh
Confidence 0 124799999999999999999999999999987663
No 245
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.36 E-value=4.8e-06 Score=91.34 Aligned_cols=111 Identities=12% Similarity=0.069 Sum_probs=70.9
Q ss_pred HHHHHHHhhCCCeEEEEcCchhhhhhccCcchHHHHHHHHHHHHhcCCCCEEEEeeccCCCCCccccccccccccccccc
Q 001746 474 EALCEVLHSTQPLIVYFPDSSLWLSRAVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPNFGRL 553 (1018)
Q Consensus 474 ~~L~e~~~~~~p~Iiff~did~~~~~s~~~~~~~~~~s~~~~~l~~l~g~v~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (1018)
..+|+.+ .+.||||||+|.+.+. .+.....+.+.+|...|+...+.++||++.+. +..++
T Consensus 98 ~~~~~~a---~~~VL~IDE~~~L~~~-~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~-~~~~~--------------- 157 (261)
T TIGR02881 98 REVIKKA---LGGVLFIDEAYSLARG-GEKDFGKEAIDTLVKGMEDNRNEFVLILAGYS-DEMDY--------------- 157 (261)
T ss_pred HHHHHhc---cCCEEEEechhhhccC-CccchHHHHHHHHHHHHhccCCCEEEEecCCc-chhHH---------------
Confidence 4455544 4579999999997542 11112234556667777777788777754432 21111
Q ss_pred cCCCCchhhhhcccccCCCcchHHHHhccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001746 554 AKLPLPLQRLTEGLKATKRSDDNEIYNLFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHK 622 (1018)
Q Consensus 554 ~~~~~~~~~LvIGmTnR~d~iD~aL~rrFe~~ieI~LPdeegRl~Il~iht~~~~~~~~~~~~v~~l~~ 622 (1018)
...++++|++||+.+++|+.++.+.+.+|++..+.. ......+.-+..+..
T Consensus 158 -----------------~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~-~~~~l~~~a~~~l~~ 208 (261)
T TIGR02881 158 -----------------FLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE-REYKLTEEAKWKLRE 208 (261)
T ss_pred -----------------HHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH-cCCccCHHHHHHHHH
Confidence 124779999999999999999999999999977643 222333333444444
No 246
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.35 E-value=1e-06 Score=100.02 Aligned_cols=69 Identities=23% Similarity=0.421 Sum_probs=48.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhhH---HHHHHHHHHHHHhcCCeEEEecchhhh
Q 001746 765 KGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGDA---EKLTKALFSFASKLAPVIIFVDEVDSL 835 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~ge~---ek~I~~lF~~A~k~~PsIIfIDEID~L 835 (1018)
.+++|+||+|||||+||.|||+++ |..++.++..+++....... .......+... ....+|+|||+...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l--~~~DLLIIDDlG~e 258 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLL--INCDLLIIDDLGTE 258 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHh--ccCCEEEEeccCCC
Confidence 679999999999999999999987 78889999888765442210 00111112222 24589999999775
No 247
>PRK06526 transposase; Provisional
Probab=98.33 E-value=6.5e-07 Score=98.23 Aligned_cols=74 Identities=26% Similarity=0.326 Sum_probs=49.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhhH-HHHHHHHHHHHHhcCCeEEEecchhhhh
Q 001746 761 LRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGDA-EKLTKALFSFASKLAPVIIFVDEVDSLL 836 (1018)
Q Consensus 761 ~~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~ge~-ek~I~~lF~~A~k~~PsIIfIDEID~L~ 836 (1018)
+....+++|+||||||||+||.+|+.++ |..++.+++.+++....... ...+...+.. -..+.+|+|||++.+.
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~--l~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVK--LGRYPLLIVDEVGYIP 172 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHH--hccCCEEEEcccccCC
Confidence 3445789999999999999999999876 67777777766655432111 1111222221 1346899999998763
No 248
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.32 E-value=5e-06 Score=95.66 Aligned_cols=163 Identities=25% Similarity=0.363 Sum_probs=101.6
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEE--e
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA-------GANFISI--T 796 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~el-------g~~fi~I--s 796 (1018)
..|.-+.|.+..+..|.-... .....|+||.|+.|||||++++|||.-+ |++|-.= +
T Consensus 14 ~pf~aivGqd~lk~aL~l~av--------------~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~ 79 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAV--------------DPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDD 79 (423)
T ss_pred cchhhhcCchHHHHHHhhhhc--------------ccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCC
Confidence 456778899988887744321 1223579999999999999999999977 2222000 0
Q ss_pred ----cc-------------------ccchhhhhhHHH----------HHHH---HHHH--HHhcCCeEEEecchhhhhhc
Q 001746 797 ----GS-------------------TLTSKWFGDAEK----------LTKA---LFSF--ASKLAPVIIFVDEVDSLLGA 838 (1018)
Q Consensus 797 ----~s-------------------eL~s~~~ge~ek----------~I~~---lF~~--A~k~~PsIIfIDEID~L~~~ 838 (1018)
|. .++....+.++. .+.. .|.- ..+-.-.|+||||+..|-
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~-- 157 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLD-- 157 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEecccccc--
Confidence 00 011111222222 2221 1110 001123699999998873
Q ss_pred cCCCcchHHHHHHHHHHHhhh---------ccccccCCCcEEEEEecCCCC-CCcHHHHhccCccccccCC-CHHHHHHH
Q 001746 839 RGGAFEHEATRRMRNEFMSAW---------DGLRSKESQKILILGATNRPF-DLDDAVIRRLPRRIYVDLP-DAENRMKI 907 (1018)
Q Consensus 839 r~~~~~~e~~~~il~~LL~~L---------dgl~~~~~~~VlVIaTTN~p~-~LD~aLlrRFd~~I~V~lP-d~eeR~eI 907 (1018)
.++.+.||..+ +|+.-.-.-++++|||+|.-. .|-+.|+.||...+.+..| +.++|.+|
T Consensus 158 ----------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~I 227 (423)
T COG1239 158 ----------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEI 227 (423)
T ss_pred ----------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHH
Confidence 23344444333 333333445899999999764 5999999999999988765 78999999
Q ss_pred HHHHHhc
Q 001746 908 LRIFLAH 914 (1018)
Q Consensus 908 Lk~~L~~ 914 (1018)
.+.-+..
T Consensus 228 i~r~~~f 234 (423)
T COG1239 228 IRRRLAF 234 (423)
T ss_pred HHHHHHh
Confidence 9987765
No 249
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.31 E-value=4.2e-06 Score=94.99 Aligned_cols=132 Identities=17% Similarity=0.194 Sum_probs=87.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCC-------------------------cEEEEecccc---chhh-hhhHHHHH
Q 001746 762 RPCKGILLFGPPGTGKTLLAKALATEAGA-------------------------NFISITGSTL---TSKW-FGDAEKLT 812 (1018)
Q Consensus 762 ~p~~gVLL~GPPGTGKT~LArAIA~elg~-------------------------~fi~Is~seL---~s~~-~ge~ek~I 812 (1018)
+.+..+||+||+|+|||++|+++|+.+.+ .|+.+.+..- .++. ..-.-..|
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 44578999999999999999999998732 1344443210 0000 00123445
Q ss_pred HHHHHHHHh----cCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHh
Q 001746 813 KALFSFASK----LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIR 888 (1018)
Q Consensus 813 ~~lF~~A~k----~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlr 888 (1018)
+.+...+.. ...-|++||+++.+.. ...+.++..++... ..+.+|.+|+.++.+.+.+++
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld~------------~a~naLLk~LEep~----~~~~~Ilvth~~~~ll~ti~S 162 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMNL------------QAANSLLKVLEEPP----PQVVFLLVSHAADKVLPTIKS 162 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCCH------------HHHHHHHHHHHhCc----CCCEEEEEeCChHhChHHHHH
Confidence 555555543 2346999999999832 23455666665542 235566688888899999999
Q ss_pred ccCccccccCCCHHHHHHHHHH
Q 001746 889 RLPRRIYVDLPDAENRMKILRI 910 (1018)
Q Consensus 889 RFd~~I~V~lPd~eeR~eILk~ 910 (1018)
|+ ..+.|+.|+.++..+.|..
T Consensus 163 Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 163 RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred Hh-hhhcCCCCCHHHHHHHHHh
Confidence 99 6788999999988877754
No 250
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.30 E-value=5.8e-06 Score=97.59 Aligned_cols=190 Identities=21% Similarity=0.266 Sum_probs=108.9
Q ss_pred cccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhh
Q 001746 728 FDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKW 804 (1018)
Q Consensus 728 fdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~s~~ 804 (1018)
+.++.|.......+.+.+... .....+|||.|++|||||++|+++.... +.+|+.++|..+....
T Consensus 137 ~~~lig~s~~~~~l~~~~~~~------------~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~ 204 (469)
T PRK10923 137 TTDIIGEAPAMQDVFRIIGRL------------SRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL 204 (469)
T ss_pred cccceecCHHHHHHHHHHHHH------------hccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHH
Confidence 445666655555555544221 1223569999999999999999998876 5799999998874322
Q ss_pred hhhHHHHHHHHHHHH---------------HhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhcccc------
Q 001746 805 FGDAEKLTKALFSFA---------------SKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR------ 863 (1018)
Q Consensus 805 ~ge~ek~I~~lF~~A---------------~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~------ 863 (1018)
. -..+|... .......||||||+.|... +...|+..++...
T Consensus 205 ~------~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~------------~q~~L~~~l~~~~~~~~~~ 266 (469)
T PRK10923 205 I------ESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLD------------VQTRLLRVLADGQFYRVGG 266 (469)
T ss_pred H------HHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCHH------------HHHHHHHHHhcCcEEeCCC
Confidence 1 11222211 1223578999999998422 2233444333211
Q ss_pred -ccCCCcEEEEEecCCC-------CCCcHHHHhccCccccccCCCHHHHHH----HHHHHHhcc----CCC-Cccc---H
Q 001746 864 -SKESQKILILGATNRP-------FDLDDAVIRRLPRRIYVDLPDAENRMK----ILRIFLAHE----SLE-SGFQ---F 923 (1018)
Q Consensus 864 -~~~~~~VlVIaTTN~p-------~~LD~aLlrRFd~~I~V~lPd~eeR~e----ILk~~L~~~----~l~-~dvd---l 923 (1018)
......+.||+||+.. ..+.+.+..||. .+.+.+|...+|.+ ++.+++... +.. ..+. +
T Consensus 267 ~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~-~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~ 345 (469)
T PRK10923 267 YAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLN-VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETE 345 (469)
T ss_pred CCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHHHhc-ceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHH
Confidence 0112346788888653 246677788883 35566666555544 555555432 111 1122 3
Q ss_pred HHHHHHccCCCHHHHHHHHHHHHHH
Q 001746 924 NELANATEGYSGSDLKNLCIAAAYR 948 (1018)
Q Consensus 924 ~~LA~~TeGfSgaDL~~L~~~Aa~~ 948 (1018)
..|....=--+.++|+++++.|+..
T Consensus 346 ~~L~~~~wpgNv~eL~~~i~~~~~~ 370 (469)
T PRK10923 346 AALTRLAWPGNVRQLENTCRWLTVM 370 (469)
T ss_pred HHHHhCCCCChHHHHHHHHHHHHHh
Confidence 3333322122458999999888764
No 251
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.29 E-value=3.6e-06 Score=88.19 Aligned_cols=161 Identities=24% Similarity=0.263 Sum_probs=85.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC---cEEEEecc-ccc----hh------------------------------hh
Q 001746 764 CKGILLFGPPGTGKTLLAKALATEAGA---NFISITGS-TLT----SK------------------------------WF 805 (1018)
Q Consensus 764 ~~gVLL~GPPGTGKT~LArAIA~elg~---~fi~Is~s-eL~----s~------------------------------~~ 805 (1018)
...++|+||.|+|||+|++.+.+.+.- ..+.+... ... .. ..
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 356999999999999999999998832 11112111 000 00 00
Q ss_pred hhHHHHHHHHHHHHHhc-CCeEEEecchhhhh-hccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCC---
Q 001746 806 GDAEKLTKALFSFASKL-APVIIFVDEVDSLL-GARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPF--- 880 (1018)
Q Consensus 806 ge~ek~I~~lF~~A~k~-~PsIIfIDEID~L~-~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~--- 880 (1018)
......+..++....+. ...||+|||++.+. .... ...+...|...++..... .++.+|.+++...
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~--~~~~~v~~~S~~~~~~ 170 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEE-------DKDFLKSLRSLLDSLLSQ--QNVSIVITGSSDSLME 170 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTT-------THHHHHHHHHHHHH------TTEEEEEEESSHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccc-------hHHHHHHHHHHHhhcccc--CCceEEEECCchHHHH
Confidence 12234455555555443 34899999999997 2211 123444555555553222 2333333332211
Q ss_pred ---CCcHHHHhccCccccccCCCHHHHHHHHHHHHhccC-C-CCcccHHHHHHHccCCC
Q 001746 881 ---DLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHES-L-ESGFQFNELANATEGYS 934 (1018)
Q Consensus 881 ---~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~-l-~~dvdl~~LA~~TeGfS 934 (1018)
.-...+..|+.. +.++..+.++..+++...+.... + .++.+++.+...+.|..
T Consensus 171 ~~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P 228 (234)
T PF01637_consen 171 EFLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNP 228 (234)
T ss_dssp HTT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-H
T ss_pred HhhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCH
Confidence 112234457755 88999999999999999876551 1 25667888888888843
No 252
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.29 E-value=2.1e-05 Score=86.09 Aligned_cols=170 Identities=21% Similarity=0.293 Sum_probs=114.3
Q ss_pred ccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-C--CcE-----------
Q 001746 727 RFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA-G--ANF----------- 792 (1018)
Q Consensus 727 tfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~el-g--~~f----------- 792 (1018)
+++.+.+.++....|+.+... ....++|+|||+|+||-+.+.++.+++ | +.=
T Consensus 11 sl~~l~~~~e~~~~Lksl~~~--------------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tp 76 (351)
T KOG2035|consen 11 SLDELIYHEELANLLKSLSST--------------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTP 76 (351)
T ss_pred hhhhcccHHHHHHHHHHhccc--------------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecC
Confidence 466677778888887765421 122579999999999999999999998 3 211
Q ss_pred ---------------EEEeccccchhhhhh-HHHHHHHHHHHHHhcCC---------eEEEecchhhhhhccCCCcchHH
Q 001746 793 ---------------ISITGSTLTSKWFGD-AEKLTKALFSFASKLAP---------VIIFVDEVDSLLGARGGAFEHEA 847 (1018)
Q Consensus 793 ---------------i~Is~seL~s~~~ge-~ek~I~~lF~~A~k~~P---------sIIfIDEID~L~~~r~~~~~~e~ 847 (1018)
+.+++++ .|. -.-.+..+..+..+.+| -|++|-|+|.|..+. ..+
T Consensus 77 S~kklEistvsS~yHlEitPSD-----aG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dA-----Q~a 146 (351)
T KOG2035|consen 77 SKKKLEISTVSSNYHLEITPSD-----AGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDA-----QHA 146 (351)
T ss_pred CCceEEEEEecccceEEeChhh-----cCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHH-----HHH
Confidence 1112221 121 13334455544443333 599999999996432 233
Q ss_pred HHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCCCc-ccHHHH
Q 001746 848 TRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLESG-FQFNEL 926 (1018)
Q Consensus 848 ~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~~d-vdl~~L 926 (1018)
.++.+.-.. ..+-+|..+|....+-+++++|+ ..|.++.|+.++...++...+.++++.-+ .-+..|
T Consensus 147 LRRTMEkYs-----------~~~RlIl~cns~SriIepIrSRC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rI 214 (351)
T KOG2035|consen 147 LRRTMEKYS-----------SNCRLILVCNSTSRIIEPIRSRC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRI 214 (351)
T ss_pred HHHHHHHHh-----------cCceEEEEecCcccchhHHhhhe-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHH
Confidence 444443332 24557778899999999999998 67899999999999999999998887633 235566
Q ss_pred HHHccC
Q 001746 927 ANATEG 932 (1018)
Q Consensus 927 A~~TeG 932 (1018)
|+.+.|
T Consensus 215 a~kS~~ 220 (351)
T KOG2035|consen 215 AEKSNR 220 (351)
T ss_pred HHHhcc
Confidence 665554
No 253
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.29 E-value=2e-06 Score=94.45 Aligned_cols=71 Identities=28% Similarity=0.412 Sum_probs=51.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhhHHH-HH-HHHHHHHHhcCCeEEEecchhhh
Q 001746 763 PCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGDAEK-LT-KALFSFASKLAPVIIFVDEVDSL 835 (1018)
Q Consensus 763 p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~ge~ek-~I-~~lF~~A~k~~PsIIfIDEID~L 835 (1018)
.+.+++|+||||+|||+||.|||+++ |..++.++.++++......... .. ..+.... ....+|+|||+...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l--~~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL--KKVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh--hcCCEEEEecccCc
Confidence 34789999999999999999999988 7889999998887654332211 11 1111111 24589999999775
No 254
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.28 E-value=8.6e-06 Score=97.18 Aligned_cols=145 Identities=21% Similarity=0.305 Sum_probs=84.7
Q ss_pred ccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC----CcEEEEe------
Q 001746 727 RFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAG----ANFISIT------ 796 (1018)
Q Consensus 727 tfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg----~~fi~Is------ 796 (1018)
.|.++.|...++..+.-. ......++|.||||+|||+|++.++..+. -..+.+.
T Consensus 189 d~~~v~Gq~~~~~al~la----------------a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~ 252 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEIT----------------AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLV 252 (506)
T ss_pred CeEEEECcHHHHhhhhee----------------ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhh
Confidence 677888877666654211 12346799999999999999999987652 1111110
Q ss_pred cc-----ccc-------------hhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhh
Q 001746 797 GS-----TLT-------------SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSA 858 (1018)
Q Consensus 797 ~s-----eL~-------------s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~ 858 (1018)
.. .+. ...+|.....-...+..|. ..+|||||++.+- ..++..|+..
T Consensus 253 g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~---gGvLfLDEi~e~~------------~~~~~~L~~~ 317 (506)
T PRK09862 253 NAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAH---NGVLFLDELPEFE------------RRTLDALREP 317 (506)
T ss_pred ccccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhcc---CCEEecCCchhCC------------HHHHHHHHHH
Confidence 00 000 0011111111112344443 3799999998762 2334444444
Q ss_pred hccc---------cccCCCcEEEEEecCCCC---------------------CCcHHHHhccCccccccCCCHH
Q 001746 859 WDGL---------RSKESQKILILGATNRPF---------------------DLDDAVIRRLPRRIYVDLPDAE 902 (1018)
Q Consensus 859 Ldgl---------~~~~~~~VlVIaTTN~p~---------------------~LD~aLlrRFd~~I~V~lPd~e 902 (1018)
|+.- ......++.+|+|+|... .+...+++||+..+.++.|+.+
T Consensus 318 LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 318 IESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred HHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 4211 111234689999998642 4777999999999999988644
No 255
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.27 E-value=1e-05 Score=94.95 Aligned_cols=165 Identities=21% Similarity=0.294 Sum_probs=96.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhhHHHHHHHHHHH---------------HHhcCCeE
Q 001746 765 KGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGDAEKLTKALFSF---------------ASKLAPVI 826 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~ge~ek~I~~lF~~---------------A~k~~PsI 826 (1018)
.++|++|++||||+++|+++.... +.+|+.++|..+...... ..+|.. .......+
T Consensus 167 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~------~~lfg~~~~~~~~~~~~~~g~~~~a~~gt 240 (457)
T PRK11361 167 ASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLE------SELFGHEKGAFTGAQTLRQGLFERANEGT 240 (457)
T ss_pred cEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHH------HHhcCCCCCCCCCCCCCCCCceEECCCCE
Confidence 569999999999999999998775 579999999887432211 112221 11123479
Q ss_pred EEecchhhhhhccCCCcchHHHHHHHHHHHhhhcccc-------ccCCCcEEEEEecCCC-------CCCcHHHHhccCc
Q 001746 827 IFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR-------SKESQKILILGATNRP-------FDLDDAVIRRLPR 892 (1018)
Q Consensus 827 IfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~-------~~~~~~VlVIaTTN~p-------~~LD~aLlrRFd~ 892 (1018)
||||||+.|... +...|+..++... ......+.||+||+.. ..+.+.+..|+.
T Consensus 241 l~ld~i~~l~~~------------~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l~- 307 (457)
T PRK11361 241 LLLDEIGEMPLV------------LQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLN- 307 (457)
T ss_pred EEEechhhCCHH------------HHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhc-
Confidence 999999998422 2233444333211 1111347788888754 235566666663
Q ss_pred cccccCCCHHHHHH----HHHHHHhccC----CC-CcccHHHHHHHc-cCC--CHHHHHHHHHHHHHH
Q 001746 893 RIYVDLPDAENRMK----ILRIFLAHES----LE-SGFQFNELANAT-EGY--SGSDLKNLCIAAAYR 948 (1018)
Q Consensus 893 ~I~V~lPd~eeR~e----ILk~~L~~~~----l~-~dvdl~~LA~~T-eGf--SgaDL~~L~~~Aa~~ 948 (1018)
.+.+..|...+|.+ ++..++.... .. ..++-+.+.... ..| +.++|++++..|+..
T Consensus 308 ~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~ 375 (457)
T PRK11361 308 VIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVM 375 (457)
T ss_pred cceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHh
Confidence 46677777777654 3444443221 11 123333332222 122 568999998888754
No 256
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.27 E-value=3.2e-06 Score=95.18 Aligned_cols=70 Identities=20% Similarity=0.310 Sum_probs=49.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhhHH-HHHHHHHHHHHhcCCeEEEecchhhh
Q 001746 764 CKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGDAE-KLTKALFSFASKLAPVIIFVDEVDSL 835 (1018)
Q Consensus 764 ~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~ge~e-k~I~~lF~~A~k~~PsIIfIDEID~L 835 (1018)
.+|++|+||+|||||+||.|||+++ |..+..+..++++........ ..+...+... ....||+|||+..-
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l--~~~dlLiIDDiG~e 229 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAV--KEAPVLMLDDIGAE 229 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHh--cCCCEEEEecCCCc
Confidence 4789999999999999999999998 788888888877654432211 1122223322 24689999999753
No 257
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=4.6e-07 Score=105.28 Aligned_cols=48 Identities=42% Similarity=0.659 Sum_probs=39.8
Q ss_pred CcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 001746 725 GVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA 788 (1018)
Q Consensus 725 ~vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~el 788 (1018)
...|.||.|++..|..+.... .++ +++|++|||||||||||+.+..-+
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAA-----------AGg-----HnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAA-----------AGG-----HNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHH-----------hcC-----CcEEEecCCCCchHHhhhhhcccC
Confidence 357999999999999997764 233 789999999999999999886543
No 258
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.23 E-value=1.3e-06 Score=86.58 Aligned_cols=105 Identities=24% Similarity=0.441 Sum_probs=63.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCC
Q 001746 765 KGILLFGPPGTGKTLLAKALATEAG---ANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGG 841 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~elg---~~fi~Is~seL~s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~ 841 (1018)
.+|||+|++||||+++|++|....+ .+|+.+++..+. ..++..+ ...+|||+|||.|...
T Consensus 22 ~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L~~~--- 84 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRLSPE--- 84 (138)
T ss_dssp S-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS-HH---
T ss_pred CcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHCCHH---
Confidence 5699999999999999999998774 366666665533 2344443 6789999999998422
Q ss_pred CcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCC-C------CCcHHHHhccCccccccCC
Q 001746 842 AFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP-F------DLDDAVIRRLPRRIYVDLP 899 (1018)
Q Consensus 842 ~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p-~------~LD~aLlrRFd~~I~V~lP 899 (1018)
....|+..+.... ..++.+|+++..+ . .+++.|..+|. .+.+..|
T Consensus 85 ---------~Q~~L~~~l~~~~---~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~-~~~i~lP 136 (138)
T PF14532_consen 85 ---------AQRRLLDLLKRQE---RSNVRLIASSSQDLEELVEEGRFSPDLYYRLS-QLEIHLP 136 (138)
T ss_dssp ---------HHHHHHHHHHHCT---TTTSEEEEEECC-CCCHHHHSTHHHHHHHHCS-TCEEEE-
T ss_pred ---------HHHHHHHHHHhcC---CCCeEEEEEeCCCHHHHhhccchhHHHHHHhC-CCEEeCC
Confidence 2233444443321 2345566665433 2 26667777774 2344444
No 259
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.23 E-value=9.4e-07 Score=92.01 Aligned_cols=71 Identities=31% Similarity=0.455 Sum_probs=47.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhhH-HHHHHHHHHHHHhcCCeEEEecchhh
Q 001746 762 RPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGDA-EKLTKALFSFASKLAPVIIFVDEVDS 834 (1018)
Q Consensus 762 ~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~ge~-ek~I~~lF~~A~k~~PsIIfIDEID~ 834 (1018)
....+++|+||||||||+||.|+++++ |..+..++.++++....... .......+... ....+|+|||+..
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l--~~~dlLilDDlG~ 119 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRL--KRVDLLILDDLGY 119 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHH--HTSSCEEEETCTS
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcc--ccccEecccccce
Confidence 345789999999999999999999887 88899999888866543221 01112222222 2458999999964
No 260
>PRK09183 transposase/IS protein; Provisional
Probab=98.23 E-value=2.8e-06 Score=93.43 Aligned_cols=73 Identities=32% Similarity=0.414 Sum_probs=50.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhh-HHHHHHHHHHHHHhcCCeEEEecchhhh
Q 001746 762 RPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGD-AEKLTKALFSFASKLAPVIIFVDEVDSL 835 (1018)
Q Consensus 762 ~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~ge-~ek~I~~lF~~A~k~~PsIIfIDEID~L 835 (1018)
....+++|+||||||||+||.+++..+ |..+..+++.++...+... ....+..+|... ...+.+++|||++.+
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYL 176 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccC
Confidence 334679999999999999999998764 7778788877765443221 111233444433 235789999999865
No 261
>PF13173 AAA_14: AAA domain
Probab=98.22 E-value=3.2e-06 Score=82.75 Aligned_cols=69 Identities=33% Similarity=0.406 Sum_probs=48.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhh
Q 001746 765 KGILLFGPPGTGKTLLAKALATEAG--ANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSL 835 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~elg--~~fi~Is~seL~s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L 835 (1018)
+.++|+||.|+|||++++.+++.+. -+++.+++.+.......... +...|.......+.+||||||+.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 4589999999999999999999886 77888887765432211111 223333222226789999999987
No 262
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.22 E-value=1.5e-05 Score=88.77 Aligned_cols=161 Identities=19% Similarity=0.199 Sum_probs=104.7
Q ss_pred CCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--E----EEEec
Q 001746 724 IGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN--F----ISITG 797 (1018)
Q Consensus 724 ~~vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~--f----i~Is~ 797 (1018)
....++|+++.+++...+.++... ....++|+|||||||||....+.|..+-.+ + ..+++
T Consensus 36 rP~~l~dv~~~~ei~st~~~~~~~--------------~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelna 101 (360)
T KOG0990|consen 36 RPPFLGIVIKQEPIWSTENRYSGM--------------PGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNA 101 (360)
T ss_pred CCchhhhHhcCCchhhHHHHhccC--------------CCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhc
Confidence 345677888888888888877422 112389999999999999999999998553 1 11222
Q ss_pred cccchhhhhhHHHHHHHHHHHHHh-------cCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcE
Q 001746 798 STLTSKWFGDAEKLTKALFSFASK-------LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKI 870 (1018)
Q Consensus 798 seL~s~~~ge~ek~I~~lF~~A~k-------~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~V 870 (1018)
++-.+ . ...+.-...|..++. ..+..|++||+|.+...- ..+.++++..+ +.++
T Consensus 102 Sd~rg--i-d~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~A-----QnALRRviek~-----------t~n~ 162 (360)
T KOG0990|consen 102 SDDRG--I-DPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDA-----QNALRRVIEKY-----------TANT 162 (360)
T ss_pred cCccC--C-cchHHHHHHHHhhccceeccccCceeEEEecchhHhhHHH-----HHHHHHHHHHh-----------ccce
Confidence 22111 0 112222344555442 257799999999986432 12233333322 2345
Q ss_pred EEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCC
Q 001746 871 LILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE 918 (1018)
Q Consensus 871 lVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~ 918 (1018)
-+...+|.+..+.+++++||. .+.+...+...-...+.+++..+...
T Consensus 163 rF~ii~n~~~ki~pa~qsRct-rfrf~pl~~~~~~~r~shi~e~e~~~ 209 (360)
T KOG0990|consen 163 RFATISNPPQKIHPAQQSRCT-RFRFAPLTMAQQTERQSHIRESEQKE 209 (360)
T ss_pred EEEEeccChhhcCchhhcccc-cCCCCCCChhhhhhHHHHHHhcchhh
Confidence 566678999999999999994 56777777777778888887766543
No 263
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.21 E-value=3.4e-05 Score=84.81 Aligned_cols=53 Identities=23% Similarity=0.221 Sum_probs=37.5
Q ss_pred CCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCC-CcccHHHHHHHcc
Q 001746 878 RPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATE 931 (1018)
Q Consensus 878 ~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~-~dvdl~~LA~~Te 931 (1018)
.|.-+++.++.|+ ..|..-+.+.++.++|++...+.+++. ++..+..++....
T Consensus 347 sPhGip~dllDRl-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt 400 (456)
T KOG1942|consen 347 SPHGIPPDLLDRL-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGT 400 (456)
T ss_pred CCCCCCHHHhhhe-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhcc
Confidence 3566889999998 566666778888889999888877765 3334555665443
No 264
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.21 E-value=2.1e-05 Score=94.44 Aligned_cols=199 Identities=17% Similarity=0.196 Sum_probs=111.3
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc----
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT---- 801 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~---- 801 (1018)
.+.+||.--.+..++++.++...+. + ..+.+-+||+||||||||++++++|+++|+.++....+...
T Consensus 16 ~~~~eLavhkkKv~eV~~wl~~~~~--------~-~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~ 86 (519)
T PF03215_consen 16 KTLDELAVHKKKVEEVRSWLEEMFS--------G-SSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESD 86 (519)
T ss_pred CCHHHhhccHHHHHHHHHHHHHHhc--------c-CCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccc
Confidence 4566777777777777777654211 1 12345688999999999999999999999988875432220
Q ss_pred ---hhhhhhH------HHHHHHHHHH-----HHh-----------cCCeEEEecchhhhhhccCCCcchHHHHHHHHHHH
Q 001746 802 ---SKWFGDA------EKLTKALFSF-----ASK-----------LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFM 856 (1018)
Q Consensus 802 ---s~~~ge~------ek~I~~lF~~-----A~k-----------~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL 856 (1018)
..+.+.. ...+ ..|.. ++. ..+.||+|+|+-.+.... . ..+...|.
T Consensus 87 ~~~~d~~s~~~~~~~f~sq~-~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~-----~---~~f~~~L~ 157 (519)
T PF03215_consen 87 NQEDDFESDFNKFDEFLSQS-DKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD-----T---SRFREALR 157 (519)
T ss_pred cccccccccccccccccchh-hhhccccccccccccccccCCCcCCCceEEEeeccccccchh-----H---HHHHHHHH
Confidence 1111100 0011 11221 111 246799999997654221 1 23333333
Q ss_pred hhhccccccCCC-cEEEEEe-c------CCC--------CCCcHHHHhcc-CccccccCCCHHHHHHHHHHHHhcc----
Q 001746 857 SAWDGLRSKESQ-KILILGA-T------NRP--------FDLDDAVIRRL-PRRIYVDLPDAENRMKILRIFLAHE---- 915 (1018)
Q Consensus 857 ~~Ldgl~~~~~~-~VlVIaT-T------N~p--------~~LD~aLlrRF-d~~I~V~lPd~eeR~eILk~~L~~~---- 915 (1018)
..+..- .. ++++|.| + |.. ..+++.++... -..|.|.+-...-..+.|+.++..+
T Consensus 158 ~~l~~~----~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~ 233 (519)
T PF03215_consen 158 QYLRSS----RCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSS 233 (519)
T ss_pred HHHHcC----CCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhh
Confidence 333221 22 6777766 1 111 13566776622 2457787777777777777777654
Q ss_pred -C---CCCccc-HHHHHHHccCCCHHHHHHHHHHHHHHHH
Q 001746 916 -S---LESGFQ-FNELANATEGYSGSDLKNLCIAAAYRPV 950 (1018)
Q Consensus 916 -~---l~~dvd-l~~LA~~TeGfSgaDL~~L~~~Aa~~Ai 950 (1018)
. ...... ++.|+.. +.+||+.++..-.+.+.
T Consensus 234 ~~~~~~p~~~~~l~~I~~~----s~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 234 SGKNKVPDKQSVLDSIAES----SNGDIRSAINNLQFWCL 269 (519)
T ss_pred cCCccCCChHHHHHHHHHh----cCchHHHHHHHHHHHhc
Confidence 1 111122 5566654 44788888776555555
No 265
>PRK06921 hypothetical protein; Provisional
Probab=98.19 E-value=3.4e-06 Score=93.22 Aligned_cols=68 Identities=26% Similarity=0.301 Sum_probs=45.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEecchhh
Q 001746 764 CKGILLFGPPGTGKTLLAKALATEA----GANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDS 834 (1018)
Q Consensus 764 ~~gVLL~GPPGTGKT~LArAIA~el----g~~fi~Is~seL~s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~ 834 (1018)
..+++|+||||+|||+|+.|||+++ |..+++++..+++....... ......+.. -....+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~--~~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNR--MKKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHH--hcCCCEEEEecccc
Confidence 3679999999999999999999986 56778888766544321111 111111121 13468999999944
No 266
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.16 E-value=7.1e-06 Score=102.46 Aligned_cols=168 Identities=17% Similarity=0.145 Sum_probs=93.2
Q ss_pred cccChHHHHHHHHHHHHcccCCchhhc---cC----CCCCCCceEEEEcCCCChHHHHHHHHHHHhC-------CcEEEE
Q 001746 730 DIGALEDVKKALNELVILPMRRPDLFS---RG----NLLRPCKGILLFGPPGTGKTLLAKALATEAG-------ANFISI 795 (1018)
Q Consensus 730 DIgGle~vk~~L~e~V~~pL~~~elf~---~~----gl~~p~~gVLL~GPPGTGKT~LArAIA~elg-------~~fi~I 795 (1018)
.|.|.+.+|..|.-.+.--......+. .+ ..++...+|||.|+||||||.+|+++++... .++..+
T Consensus 451 ~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~v 530 (915)
T PTZ00111 451 SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSV 530 (915)
T ss_pred eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccc
Confidence 467889998887554433221110010 00 1234556899999999999999999998652 334443
Q ss_pred eccccchhhh-hhHHHHH-HHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhc---------cccc
Q 001746 796 TGSTLTSKWF-GDAEKLT-KALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWD---------GLRS 864 (1018)
Q Consensus 796 s~seL~s~~~-ge~ek~I-~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ld---------gl~~ 864 (1018)
.+........ ...+..+ ...+. .....+++|||++.+... .+ ..|+..|. |+..
T Consensus 531 gLTa~~~~~d~~tG~~~le~GaLv---lAdgGtL~IDEidkms~~---------~Q---~aLlEaMEqqtIsI~KaGi~~ 595 (915)
T PTZ00111 531 GLTASIKFNESDNGRAMIQPGAVV---LANGGVCCIDELDKCHNE---------SR---LSLYEVMEQQTVTIAKAGIVA 595 (915)
T ss_pred cccchhhhcccccCcccccCCcEE---EcCCCeEEecchhhCCHH---------HH---HHHHHHHhCCEEEEecCCcce
Confidence 3322211000 0000000 00011 112479999999998322 11 22333332 2222
Q ss_pred cCCCcEEEEEecCCCC-------------CCcHHHHhccCcccc-ccCCCHHHHHHHHHHHH
Q 001746 865 KESQKILILGATNRPF-------------DLDDAVIRRLPRRIY-VDLPDAENRMKILRIFL 912 (1018)
Q Consensus 865 ~~~~~VlVIaTTN~p~-------------~LD~aLlrRFd~~I~-V~lPd~eeR~eILk~~L 912 (1018)
.-+.++.||||+|..+ .|++++++||+..+. ++.|+.+.=..|..+++
T Consensus 596 tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~ 657 (915)
T PTZ00111 596 TLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIA 657 (915)
T ss_pred ecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHH
Confidence 2345788999998742 378999999986644 56688776666655554
No 267
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.14 E-value=1.3e-05 Score=77.54 Aligned_cols=72 Identities=26% Similarity=0.475 Sum_probs=47.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--------CCcEEEEeccccch--hhh--------------hhHHHHHHHHHHHHH
Q 001746 765 KGILLFGPPGTGKTLLAKALATEA--------GANFISITGSTLTS--KWF--------------GDAEKLTKALFSFAS 820 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~el--------g~~fi~Is~seL~s--~~~--------------ge~ek~I~~lF~~A~ 820 (1018)
..++|+||||+|||++++.++..+ ..+++.++++.... .+. .........+.....
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 459999999999999999999987 67888887654321 000 112333444444444
Q ss_pred hcCCeEEEecchhhhh
Q 001746 821 KLAPVIIFVDEVDSLL 836 (1018)
Q Consensus 821 k~~PsIIfIDEID~L~ 836 (1018)
.....+|+|||+|.+.
T Consensus 85 ~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLF 100 (131)
T ss_dssp HCTEEEEEEETTHHHH
T ss_pred hcCCeEEEEeChHhcC
Confidence 4444699999999974
No 268
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.11 E-value=2e-05 Score=92.79 Aligned_cols=166 Identities=22% Similarity=0.326 Sum_probs=95.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhhHHHHHHHHHHH---------------HHhcCCeE
Q 001746 765 KGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGDAEKLTKALFSF---------------ASKLAPVI 826 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~ge~ek~I~~lF~~---------------A~k~~PsI 826 (1018)
.++++.|.+||||+++|+++.... +.+|+.++|..+...+.. ..+|.. ......++
T Consensus 158 ~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~------~~lfg~~~~~~~~~~~~~~g~~~~a~~gt 231 (463)
T TIGR01818 158 ITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE------SELFGHEKGAFTGANTRRQGRFEQADGGT 231 (463)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH------HHhcCCCCCCCCCcccCCCCcEEECCCCe
Confidence 469999999999999999998875 569999999887443221 111211 11223578
Q ss_pred EEecchhhhhhccCCCcchHHHHHHHHHHHhhhcccc-------ccCCCcEEEEEecCCC-------CCCcHHHHhccCc
Q 001746 827 IFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR-------SKESQKILILGATNRP-------FDLDDAVIRRLPR 892 (1018)
Q Consensus 827 IfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~-------~~~~~~VlVIaTTN~p-------~~LD~aLlrRFd~ 892 (1018)
||||||+.|... . ...|+..++.-. ......+.||+||+.. ..+.+.+..|+.
T Consensus 232 l~l~ei~~l~~~--------~----q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~rl~- 298 (463)
T TIGR01818 232 LFLDEIGDMPLD--------A----QTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFHRLN- 298 (463)
T ss_pred EEEEchhhCCHH--------H----HHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHHHhC-
Confidence 999999998422 1 223333332110 0111246688888654 245567777774
Q ss_pred cccccCCCHH----HHHHHHHHHHhccC----CC-CcccHHHHHHHc-cCC--CHHHHHHHHHHHHHHH
Q 001746 893 RIYVDLPDAE----NRMKILRIFLAHES----LE-SGFQFNELANAT-EGY--SGSDLKNLCIAAAYRP 949 (1018)
Q Consensus 893 ~I~V~lPd~e----eR~eILk~~L~~~~----l~-~dvdl~~LA~~T-eGf--SgaDL~~L~~~Aa~~A 949 (1018)
.+.+.+|... +...++..++.... .. ..++-+.+.... .++ +.++|++++..|+..+
T Consensus 299 ~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~ 367 (463)
T TIGR01818 299 VIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMA 367 (463)
T ss_pred cceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 3445555544 44445555554321 11 123333333222 234 3489999998887654
No 269
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.10 E-value=5.8e-05 Score=88.39 Aligned_cols=80 Identities=25% Similarity=0.326 Sum_probs=61.2
Q ss_pred HHHHHHhhcccCCCcccccccccccccchhhHHHHHHhhhhcccCccchhhcc-cccCCCCCceeeccCCchhHHHHHHH
Q 001746 162 RFKNEFSRRIVPWEKINISWDTFPYYINENTKSLLVECVGSHLKHKKFTATFG-ARLTSSSGRILLRSVPGTELYRERLI 240 (1018)
Q Consensus 162 ~~~~~~~~~v~~~~~~~vsf~~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~-~~l~~~~~riLL~~~~gsE~yqe~L~ 240 (1018)
.+++.|.+.||-. |..|.+|..++|-|.++-... ... .+.....+.|||.|||| ..++.||
T Consensus 64 ~i~~~L~~~ViGq---------------~~ak~~l~~av~~~~~r~~~~-~~~~~~~~~~~~~iLl~Gp~G--tGKT~lA 125 (412)
T PRK05342 64 EIKAHLDQYVIGQ---------------ERAKKVLSVAVYNHYKRLRHG-DKKDDDVELQKSNILLIGPTG--SGKTLLA 125 (412)
T ss_pred HHHHHHhhHeeCh---------------HHHHHHHHHHHHHHHHhhhcc-cccccccccCCceEEEEcCCC--CCHHHHH
Confidence 3666666665544 899999999999998875321 000 13444667899999999 8999999
Q ss_pred HHHHHhhCCcEEeeecCCC
Q 001746 241 RALARELQVPLLVLDSSVL 259 (1018)
Q Consensus 241 kALA~~~~a~ll~~ds~~l 259 (1018)
|+||+.+++++..+|.+.+
T Consensus 126 r~lA~~l~~pf~~id~~~l 144 (412)
T PRK05342 126 QTLARILDVPFAIADATTL 144 (412)
T ss_pred HHHHHHhCCCceecchhhc
Confidence 9999999999999998744
No 270
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.10 E-value=4e-05 Score=93.94 Aligned_cols=48 Identities=27% Similarity=0.430 Sum_probs=41.1
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAG 789 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg 789 (1018)
..|+++.|.++.+..|...+.. .+++||+||||||||++|+++++.+.
T Consensus 28 ~~~~~vigq~~a~~~L~~~~~~----------------~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKKAAKQ----------------RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred ccHHHcCChHHHHHHHHHHHHh----------------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 5799999999999998876632 13699999999999999999998774
No 271
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=1.9e-05 Score=98.60 Aligned_cols=127 Identities=22% Similarity=0.308 Sum_probs=90.3
Q ss_pred cccChHHHHHHHHHHHHcccCCchhhccCCCCC--CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccch--
Q 001746 730 DIGALEDVKKALNELVILPMRRPDLFSRGNLLR--PCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTS-- 802 (1018)
Q Consensus 730 DIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~--p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~s-- 802 (1018)
.|+|+++....+-+.|... +.|+.+ |...+||.||.|+|||-||+|+|..+ .-.||.++++++..
T Consensus 563 ~V~gQ~eAv~aIa~AI~~s--------r~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evs 634 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRS--------RAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVS 634 (898)
T ss_pred hccchHHHHHHHHHHHHhh--------hcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhh
Confidence 4678899999998888653 222233 56779999999999999999999988 45789999986322
Q ss_pred -------hhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhcccccc-------CCC
Q 001746 803 -------KWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSK-------ESQ 868 (1018)
Q Consensus 803 -------~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~-------~~~ 868 (1018)
.|.|. .....+.+..++.+-+||+|||||.- ...+++.|+..+|...-. .-.
T Consensus 635 kligsp~gyvG~--e~gg~LteavrrrP~sVVLfdeIEkA------------h~~v~n~llq~lD~GrltDs~Gr~Vd~k 700 (898)
T KOG1051|consen 635 KLIGSPPGYVGK--EEGGQLTEAVKRRPYSVVLFEEIEKA------------HPDVLNILLQLLDRGRLTDSHGREVDFK 700 (898)
T ss_pred hccCCCcccccc--hhHHHHHHHHhcCCceEEEEechhhc------------CHHHHHHHHHHHhcCccccCCCcEeecc
Confidence 13332 23346666677778899999999873 234566777777754322 224
Q ss_pred cEEEEEecCC
Q 001746 869 KILILGATNR 878 (1018)
Q Consensus 869 ~VlVIaTTN~ 878 (1018)
+++||.|+|.
T Consensus 701 N~I~IMTsn~ 710 (898)
T KOG1051|consen 701 NAIFIMTSNV 710 (898)
T ss_pred ceEEEEeccc
Confidence 6889999764
No 272
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.08 E-value=0.00013 Score=85.04 Aligned_cols=67 Identities=12% Similarity=0.316 Sum_probs=53.6
Q ss_pred hhhHHHHHHhhhhcccCccchhhcccccCCCCCceeeccCCchhHHHHHHHHHHHHhhCCcEEeeecCCCC
Q 001746 190 ENTKSLLVECVGSHLKHKKFTATFGARLTSSSGRILLRSVPGTELYRERLIRALARELQVPLLVLDSSVLA 260 (1018)
Q Consensus 190 e~tk~~L~~~~~~hl~~~~~~~~~~~~l~~~~~riLL~~~~gsE~yqe~L~kALA~~~~a~ll~~ds~~l~ 260 (1018)
+..|..|..|++-|.++..+.......+ ..+.|||.|||| ..+.+|||+||+.++++++.+|.+.+.
T Consensus 21 e~AkkalavAl~~~~~r~~l~~~~~~e~--~~~~ILliGp~G--~GKT~LAr~LAk~l~~~fi~vD~t~f~ 87 (443)
T PRK05201 21 DDAKRAVAIALRNRWRRMQLPEELRDEV--TPKNILMIGPTG--VGKTEIARRLAKLANAPFIKVEATKFT 87 (443)
T ss_pred HHHHHHHHHHHHHHHHHhcCCccccccc--CCceEEEECCCC--CCHHHHHHHHHHHhCChheeecchhhc
Confidence 8999999999999987765421111112 247899999999 999999999999999999999997443
No 273
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.08 E-value=2.8e-05 Score=76.65 Aligned_cols=72 Identities=29% Similarity=0.390 Sum_probs=49.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhh------------------------hhhHHHHHHHHHHHH
Q 001746 767 ILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKW------------------------FGDAEKLTKALFSFA 819 (1018)
Q Consensus 767 VLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~s~~------------------------~ge~ek~I~~lF~~A 819 (1018)
++|+||||+|||+++..++..+ +.+++.++........ ...........+..+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 7899999999999999998887 5667766654332211 001122223344556
Q ss_pred HhcCCeEEEecchhhhhhc
Q 001746 820 SKLAPVIIFVDEVDSLLGA 838 (1018)
Q Consensus 820 ~k~~PsIIfIDEID~L~~~ 838 (1018)
....|.+|+|||+..+...
T Consensus 82 ~~~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 82 ERGGDDLIILDELTRLVRA 100 (165)
T ss_pred hCCCCEEEEEEcHHHHHHH
Confidence 6778999999999998654
No 274
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.05 E-value=9.5e-05 Score=81.65 Aligned_cols=94 Identities=19% Similarity=0.124 Sum_probs=64.8
Q ss_pred CCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHhccCCCCcc-cHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHH
Q 001746 878 RPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLESGF-QFNELANATEGYSGSDLKNLCIAAAYRPVQELLEE 956 (1018)
Q Consensus 878 ~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dv-dl~~LA~~TeGfSgaDL~~L~~~Aa~~Airr~~~~ 956 (1018)
.|.-++-.++.|. ..|...+.+.++..+||+..+..+.+.-+. .+..|.......+-+--.+|+..|.+.+.+|-
T Consensus 338 SphGiP~D~lDR~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk--- 413 (454)
T KOG2680|consen 338 SPHGIPIDLLDRM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRK--- 413 (454)
T ss_pred CCCCCcHHHhhhh-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhc---
Confidence 4566888999988 566777789999999999999877665222 24444444444455666677777777776651
Q ss_pred HHhcCCCCCCCCccCCCHHHHHHHHHhhCCC
Q 001746 957 ERKRGKNDAAPVLRPLKLEDFIQSKAKVGPS 987 (1018)
Q Consensus 957 ~~~~~~~~~~~~~rpLT~eDF~~Al~kv~PS 987 (1018)
...+..+|+..+..-+-..
T Consensus 414 ------------~~~v~~~di~r~y~LFlD~ 432 (454)
T KOG2680|consen 414 ------------GKVVEVDDIERVYRLFLDE 432 (454)
T ss_pred ------------CceeehhHHHHHHHHHhhh
Confidence 1457888999888766433
No 275
>PRK15115 response regulator GlrR; Provisional
Probab=98.04 E-value=6.6e-05 Score=88.06 Aligned_cols=165 Identities=20% Similarity=0.293 Sum_probs=95.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhhHHHHHHHHHHHH---------------HhcCCeE
Q 001746 765 KGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGDAEKLTKALFSFA---------------SKLAPVI 826 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~ge~ek~I~~lF~~A---------------~k~~PsI 826 (1018)
..|+|+|++|||||++|+++.+.. +.+|+.++|..+...... ..+|..+ ......+
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~------~~lfg~~~~~~~~~~~~~~g~~~~a~~gt 231 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLE------SELFGHARGAFTGAVSNREGLFQAAEGGT 231 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHH------HHhcCCCcCCCCCCccCCCCcEEECCCCE
Confidence 459999999999999999998876 579999999887433211 1223211 1223579
Q ss_pred EEecchhhhhhccCCCcchHHHHHHHHHHHhhhcccc-------ccCCCcEEEEEecCCC-------CCCcHHHHhccCc
Q 001746 827 IFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR-------SKESQKILILGATNRP-------FDLDDAVIRRLPR 892 (1018)
Q Consensus 827 IfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~-------~~~~~~VlVIaTTN~p-------~~LD~aLlrRFd~ 892 (1018)
|||||||.|... ....|+..++... ......+.+|+||+.. ..+.+.+..|+.
T Consensus 232 l~l~~i~~l~~~------------~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l~- 298 (444)
T PRK15115 232 LFLDEIGDMPAP------------LQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRLN- 298 (444)
T ss_pred EEEEccccCCHH------------HHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhhc-
Confidence 999999998432 1223333332110 1111257888888753 123334444552
Q ss_pred cccccCCCHHHHHH----HHHHHHhcc----CC----CCcccHHHHHHHccCCCHHHHHHHHHHHHHH
Q 001746 893 RIYVDLPDAENRMK----ILRIFLAHE----SL----ESGFQFNELANATEGYSGSDLKNLCIAAAYR 948 (1018)
Q Consensus 893 ~I~V~lPd~eeR~e----ILk~~L~~~----~l----~~dvdl~~LA~~TeGfSgaDL~~L~~~Aa~~ 948 (1018)
.+.+.+|...+|.+ +++.++... .. -++..+..|....=.-+.++|+++++.|+..
T Consensus 299 ~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~ 366 (444)
T PRK15115 299 VVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVAL 366 (444)
T ss_pred eeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 45677788877754 445554432 11 1222234444333122568899988887653
No 276
>PF05729 NACHT: NACHT domain
Probab=98.02 E-value=2.3e-05 Score=78.01 Aligned_cols=140 Identities=16% Similarity=0.244 Sum_probs=73.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC--------Cc-EEEEeccccchh------------hhhhHHHHHHH-HHHHHHhcC
Q 001746 766 GILLFGPPGTGKTLLAKALATEAG--------AN-FISITGSTLTSK------------WFGDAEKLTKA-LFSFASKLA 823 (1018)
Q Consensus 766 gVLL~GPPGTGKT~LArAIA~elg--------~~-fi~Is~seL~s~------------~~ge~ek~I~~-lF~~A~k~~ 823 (1018)
-++|+|+||+|||++++.++..+. .. ++.+.+.+.... ........+.. .........
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 489999999999999999998761 11 223333222111 00111111111 122234456
Q ss_pred CeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHhccC--ccccccCCCH
Q 001746 824 PVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLP--RRIYVDLPDA 901 (1018)
Q Consensus 824 PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd--~~I~V~lPd~ 901 (1018)
..+|+||.+|.+...... .........+...+... ...+ +-+|.|+. +..... +.+.+. ..+.+...+.
T Consensus 82 ~~llilDglDE~~~~~~~----~~~~~~~~~l~~l~~~~-~~~~--~~liit~r-~~~~~~-~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS----QERQRLLDLLSQLLPQA-LPPG--VKLIITSR-PRAFPD-LRRRLKQAQILELEPFSE 152 (166)
T ss_pred ceEEEEechHhcccchhh----hHHHHHHHHHHHHhhhc-cCCC--CeEEEEEc-CChHHH-HHHhcCCCcEEEECCCCH
Confidence 789999999999653221 01111222222223221 1122 33333332 222222 444333 3477888899
Q ss_pred HHHHHHHHHHHhc
Q 001746 902 ENRMKILRIFLAH 914 (1018)
Q Consensus 902 eeR~eILk~~L~~ 914 (1018)
+++.++++.+++.
T Consensus 153 ~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 153 EDIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999988764
No 277
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.98 E-value=0.00014 Score=82.61 Aligned_cols=60 Identities=12% Similarity=0.036 Sum_probs=47.1
Q ss_pred hhhcccccCCCcchHHHHhccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001746 562 RLTEGLKATKRSDDNEIYNLFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHK 622 (1018)
Q Consensus 562 ~LvIGmTnR~d~iD~aL~rrFe~~ieI~LPdeegRl~Il~iht~~~~~~~~~~~~v~~l~~ 622 (1018)
..+||+||+...++++|+.||...++|++|+.+.+.+|++.+... ......++-++.++.
T Consensus 151 ~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~-~~~~~~~~~~~~ia~ 210 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARI-LGVEIDEEGALEIAR 210 (328)
T ss_pred ceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHH-cCCCcCHHHHHHHHH
Confidence 357899999999999999999999999999999999999987554 233334444555554
No 278
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.91 E-value=0.00019 Score=80.00 Aligned_cols=60 Identities=12% Similarity=0.060 Sum_probs=46.6
Q ss_pred hhhcccccCCCcchHHHHhccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001746 562 RLTEGLKATKRSDDNEIYNLFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHK 622 (1018)
Q Consensus 562 ~LvIGmTnR~d~iD~aL~rrFe~~ieI~LPdeegRl~Il~iht~~~~~~~~~~~~v~~l~~ 622 (1018)
..+||+||++..++++|+.||...+.|.+|+.+...+|++.+... ......++-++.++.
T Consensus 130 ~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~-~~~~~~~~al~~ia~ 189 (305)
T TIGR00635 130 FTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGL-LNVEIEPEAALEIAR 189 (305)
T ss_pred eEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHH-hCCCcCHHHHHHHHH
Confidence 468899999999999999999999999999999999999877543 222333334555544
No 279
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.88 E-value=6.8e-05 Score=91.26 Aligned_cols=124 Identities=13% Similarity=0.126 Sum_probs=82.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEeccccchhhhhhH--HHHHH--------HHHHHHHhcCCeEEEecch
Q 001746 765 KGILLFGPPGTGKTLLAKALATEAG--ANFISITGSTLTSKWFGDA--EKLTK--------ALFSFASKLAPVIIFVDEV 832 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~elg--~~fi~Is~seL~s~~~ge~--ek~I~--------~lF~~A~k~~PsIIfIDEI 832 (1018)
.||||.|++||||++++++++.-+. .||+.+..+.-....+|.. +..+. .++..| ...||||||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~A---h~GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEA---DGGVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeec---cCCEEEecCc
Confidence 5799999999999999999999884 5888766544333334432 22221 111111 2379999999
Q ss_pred hhhhhccCCCcchHHHHHHHHHHHhhhcc---------ccccCCCcEEEEEecCCC---CCCcHHHHhccCccccccCCC
Q 001746 833 DSLLGARGGAFEHEATRRMRNEFMSAWDG---------LRSKESQKILILGATNRP---FDLDDAVIRRLPRRIYVDLPD 900 (1018)
Q Consensus 833 D~L~~~r~~~~~~e~~~~il~~LL~~Ldg---------l~~~~~~~VlVIaTTN~p---~~LD~aLlrRFd~~I~V~lPd 900 (1018)
..+- ..++..|+..|+. ....-..+++||+|-|.. ..|.++++.||+..+.++.|+
T Consensus 103 n~~~------------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~~ 170 (584)
T PRK13406 103 ERLE------------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGLA 170 (584)
T ss_pred ccCC------------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCCC
Confidence 8763 3455566655542 222233578888874432 348999999999999998877
Q ss_pred HHH
Q 001746 901 AEN 903 (1018)
Q Consensus 901 ~ee 903 (1018)
..+
T Consensus 171 ~~~ 173 (584)
T PRK13406 171 LRD 173 (584)
T ss_pred hHH
Confidence 543
No 280
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.86 E-value=6.9e-05 Score=86.38 Aligned_cols=103 Identities=17% Similarity=0.232 Sum_probs=57.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCC-cEEEEeccccchhhhhhHHH------HHHHHHHHHHhcCCeEEEecchh
Q 001746 761 LRPCKGILLFGPPGTGKTLLAKALATEAGA-NFISITGSTLTSKWFGDAEK------LTKALFSFASKLAPVIIFVDEVD 833 (1018)
Q Consensus 761 ~~p~~gVLL~GPPGTGKT~LArAIA~elg~-~fi~Is~seL~s~~~ge~ek------~I~~lF~~A~k~~PsIIfIDEID 833 (1018)
..+++|++||||+|+|||+|+-.+...+.. .-..+.-..++......... .+..+-... .....||+|||++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l-~~~~~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADEL-AKESRLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHH-HhcCCEEEEeeee
Confidence 457899999999999999999999888743 11112222222221111111 111111111 1123599999997
Q ss_pred hhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCC
Q 001746 834 SLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP 879 (1018)
Q Consensus 834 ~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p 879 (1018)
.- .-....++..|+..+- ..++++|+|+|.+
T Consensus 138 V~---------DiaDAmil~rLf~~l~------~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 138 VT---------DIADAMILKRLFEALF------KRGVVLVATSNRP 168 (362)
T ss_pred cc---------chhHHHHHHHHHHHHH------HCCCEEEecCCCC
Confidence 52 1122234444444431 2468999999875
No 281
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.85 E-value=0.00011 Score=79.76 Aligned_cols=128 Identities=24% Similarity=0.247 Sum_probs=73.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcc
Q 001746 765 KGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFE 844 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~ 844 (1018)
.+-.++||+|||||..++++|+.+|.+++.++|++.+. ...+.++|.-+.. ..+-+++||+++|-
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~-~GaW~cfdefnrl~-------- 97 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQ-SGAWLCFDEFNRLS-------- 97 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHH-HT-EEEEETCCCSS--------
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhh-cCchhhhhhhhhhh--------
Confidence 45678999999999999999999999999999988654 3455666655544 35889999999983
Q ss_pred hHHHHHHHHHHHhhhcccccc------------CCCcEEEEEecCCC----CCCcHHHHhccCccccccCCCHHHHHHHH
Q 001746 845 HEATRRMRNEFMSAWDGLRSK------------ESQKILILGATNRP----FDLDDAVIRRLPRRIYVDLPDAENRMKIL 908 (1018)
Q Consensus 845 ~e~~~~il~~LL~~Ldgl~~~------------~~~~VlVIaTTN~p----~~LD~aLlrRFd~~I~V~lPd~eeR~eIL 908 (1018)
.+....+.+++....+.+... -+...-+..|.|.. ..|++.++.-| +.+.+..||.....+++
T Consensus 98 ~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lF-Rpvam~~PD~~~I~ei~ 176 (231)
T PF12774_consen 98 EEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALF-RPVAMMVPDLSLIAEIL 176 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTE-EEEE--S--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHh-heeEEeCCCHHHHHHHH
Confidence 223222222222211111111 11123345566533 45888888877 77888899977555544
No 282
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.84 E-value=0.00028 Score=78.96 Aligned_cols=118 Identities=14% Similarity=0.121 Sum_probs=76.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCc----------------EEEEeccccchhhhhhHHHHHHHHHHHHHh----
Q 001746 762 RPCKGILLFGPPGTGKTLLAKALATEAGAN----------------FISITGSTLTSKWFGDAEKLTKALFSFASK---- 821 (1018)
Q Consensus 762 ~p~~gVLL~GPPGTGKT~LArAIA~elg~~----------------fi~Is~seL~s~~~ge~ek~I~~lF~~A~k---- 821 (1018)
+.+..+||+||+|+||+.+|.++|..+-+. ++.+.+.. .+.. -.-..++.+-..+..
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~-~~~~--I~idqiR~l~~~~~~~p~e 93 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQG-KGRL--HSIETPRAIKKQIWIHPYE 93 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCC-CCCc--CcHHHHHHHHHHHhhCccC
Confidence 345789999999999999999999987331 12221110 0000 012234444444332
Q ss_pred cCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHhccCccccccCC
Q 001746 822 LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLP 899 (1018)
Q Consensus 822 ~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~lP 899 (1018)
...-|++||++|.+.. ...|.|+..|+.- ..++++|..|+.++.|.+.+++|+ ..+.|+.+
T Consensus 94 ~~~kv~ii~~ad~mt~------------~AaNaLLK~LEEP----p~~~~fiL~~~~~~~ll~TI~SRc-q~~~~~~~ 154 (290)
T PRK05917 94 SPYKIYIIHEADRMTL------------DAISAFLKVLEDP----PQHGVIILTSAKPQRLPPTIRSRS-LSIHIPME 154 (290)
T ss_pred CCceEEEEechhhcCH------------HHHHHHHHHhhcC----CCCeEEEEEeCChhhCcHHHHhcc-eEEEccch
Confidence 2336999999999842 2346777777552 346788888888999999999998 45666543
No 283
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.84 E-value=0.00034 Score=81.92 Aligned_cols=82 Identities=27% Similarity=0.354 Sum_probs=61.1
Q ss_pred HHHHHHHhhcccCCCcccccccccccccchhhHHHHHHhhhhcccCccch-hhc-ccccCCCCCceeeccCCchhHHHHH
Q 001746 161 ERFKNEFSRRIVPWEKINISWDTFPYYINENTKSLLVECVGSHLKHKKFT-ATF-GARLTSSSGRILLRSVPGTELYRER 238 (1018)
Q Consensus 161 ~~~~~~~~~~v~~~~~~~vsf~~fpyylse~tk~~L~~~~~~hl~~~~~~-~~~-~~~l~~~~~riLL~~~~gsE~yqe~ 238 (1018)
..+++.|...||-- |+.|..|.-|+|-|.+.-... ... ..+..-....|||.|||| ..++.
T Consensus 69 ~~i~~~L~~~ViGQ---------------e~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~G--sGKT~ 131 (413)
T TIGR00382 69 KEIKAHLDEYVIGQ---------------EQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTG--SGKTL 131 (413)
T ss_pred HHHHHHhcceecCH---------------HHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCC--cCHHH
Confidence 34777777766654 899999999999998874320 000 011223456899999999 89999
Q ss_pred HHHHHHHhhCCcEEeeecCCC
Q 001746 239 LIRALARELQVPLLVLDSSVL 259 (1018)
Q Consensus 239 L~kALA~~~~a~ll~~ds~~l 259 (1018)
|||+||+.+++++.++|.+.|
T Consensus 132 lAraLA~~l~~pf~~~da~~L 152 (413)
T TIGR00382 132 LAQTLARILNVPFAIADATTL 152 (413)
T ss_pred HHHHHHHhcCCCeEEechhhc
Confidence 999999999999998887654
No 284
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.83 E-value=0.00018 Score=78.92 Aligned_cols=157 Identities=18% Similarity=0.117 Sum_probs=82.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHH--hCCc---EEEEecccc------chh-------h------hhhHHHHHHHHHHH
Q 001746 763 PCKGILLFGPPGTGKTLLAKALATE--AGAN---FISITGSTL------TSK-------W------FGDAEKLTKALFSF 818 (1018)
Q Consensus 763 p~~gVLL~GPPGTGKT~LArAIA~e--lg~~---fi~Is~seL------~s~-------~------~ge~ek~I~~lF~~ 818 (1018)
..+-|.|+|++|+|||+||..+++. ..-. ++.++...- ... . ....+.....+...
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 97 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLREL 97 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHH
T ss_pred CeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence 4466999999999999999999987 3222 122322211 000 0 01123333444443
Q ss_pred HHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHhccCccccccC
Q 001746 819 ASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDL 898 (1018)
Q Consensus 819 A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~l 898 (1018)
. ...+++|+|||++... ....+...+.. ...+.-||.||....... .+... ...+.++.
T Consensus 98 L-~~~~~LlVlDdv~~~~--------------~~~~l~~~~~~----~~~~~kilvTTR~~~v~~-~~~~~-~~~~~l~~ 156 (287)
T PF00931_consen 98 L-KDKRCLLVLDDVWDEE--------------DLEELREPLPS----FSSGSKILVTTRDRSVAG-SLGGT-DKVIELEP 156 (287)
T ss_dssp H-CCTSEEEEEEEE-SHH--------------HH-------HC----HHSS-EEEEEESCGGGGT-THHSC-EEEEECSS
T ss_pred h-ccccceeeeeeecccc--------------ccccccccccc----cccccccccccccccccc-ccccc-cccccccc
Confidence 3 3458999999997642 11222222211 112345666776543221 11111 35678888
Q ss_pred CCHHHHHHHHHHHHhccC----CCCcccHHHHHHHccCCCHHHHHHH
Q 001746 899 PDAENRMKILRIFLAHES----LESGFQFNELANATEGYSGSDLKNL 941 (1018)
Q Consensus 899 Pd~eeR~eILk~~L~~~~----l~~dvdl~~LA~~TeGfSgaDL~~L 941 (1018)
.+.++-.++|........ .........|++.+.| .+-.|..+
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLal~~~ 202 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGG-LPLALKLI 202 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 999999999998876443 1112235788888887 44444433
No 285
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.81 E-value=1.2e-05 Score=89.22 Aligned_cols=140 Identities=19% Similarity=0.308 Sum_probs=78.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC-Cc--EEEEeccccchhhhhhHHHHHHHHHHHH----H-------hcCCeEEEe
Q 001746 764 CKGILLFGPPGTGKTLLAKALATEAG-AN--FISITGSTLTSKWFGDAEKLTKALFSFA----S-------KLAPVIIFV 829 (1018)
Q Consensus 764 ~~gVLL~GPPGTGKT~LArAIA~elg-~~--fi~Is~seL~s~~~ge~ek~I~~lF~~A----~-------k~~PsIIfI 829 (1018)
.+++||.||+|||||++++.+...+. .. ...+.++... ....+..+.+.. + ..+..|+||
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fi 106 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFI 106 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESSSEEEEEE
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEe
Confidence 36799999999999999998877663 22 2234433211 122222222111 0 112369999
Q ss_pred cchhhhhhccCCCcchHHHHHHHHHHHhhhccccccC------CCcEEEEEecCCCC---CCcHHHHhccCccccccCCC
Q 001746 830 DEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKE------SQKILILGATNRPF---DLDDAVIRRLPRRIYVDLPD 900 (1018)
Q Consensus 830 DEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~------~~~VlVIaTTN~p~---~LD~aLlrRFd~~I~V~lPd 900 (1018)
||+..-..+..+.. ..-.++.+++.. .|....+ =..+.+|||++.+. .+++.++|.| ..+.++.|+
T Consensus 107 DDlN~p~~d~ygtq---~~iElLRQ~i~~-~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f-~i~~~~~p~ 181 (272)
T PF12775_consen 107 DDLNMPQPDKYGTQ---PPIELLRQLIDY-GGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHF-NILNIPYPS 181 (272)
T ss_dssp ETTT-S---TTS-----HHHHHHHHHHHC-SEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTE-EEEE----T
T ss_pred cccCCCCCCCCCCc---CHHHHHHHHHHh-cCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhhe-EEEEecCCC
Confidence 99987654443321 122334444322 1222211 13578889887543 3788888888 678899999
Q ss_pred HHHHHHHHHHHHhc
Q 001746 901 AENRMKILRIFLAH 914 (1018)
Q Consensus 901 ~eeR~eILk~~L~~ 914 (1018)
.+....|+..++..
T Consensus 182 ~~sl~~If~~il~~ 195 (272)
T PF12775_consen 182 DESLNTIFSSILQS 195 (272)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhh
Confidence 99999999888764
No 286
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.79 E-value=0.00016 Score=76.21 Aligned_cols=77 Identities=23% Similarity=0.399 Sum_probs=53.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhh-----------------------hHHHHHHH
Q 001746 761 LRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFG-----------------------DAEKLTKA 814 (1018)
Q Consensus 761 ~~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~g-----------------------e~ek~I~~ 814 (1018)
+.+..-++|+||||+|||.++..++.+. +...++++...+...... +....+..
T Consensus 9 i~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 88 (209)
T TIGR02237 9 VERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQK 88 (209)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHHH
Confidence 5566779999999999999999988654 667888887652111110 11222444
Q ss_pred HHHHHHhcCCeEEEecchhhhhh
Q 001746 815 LFSFASKLAPVIIFVDEVDSLLG 837 (1018)
Q Consensus 815 lF~~A~k~~PsIIfIDEID~L~~ 837 (1018)
+...+....+.+|+||-|..+..
T Consensus 89 l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 89 TSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHhhcCccEEEEeCcHHHhH
Confidence 45555556799999999999864
No 287
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.78 E-value=0.00034 Score=81.79 Aligned_cols=166 Identities=20% Similarity=0.291 Sum_probs=93.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhhHHHHHHHHHHH---------------HHhcCCe
Q 001746 764 CKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGDAEKLTKALFSF---------------ASKLAPV 825 (1018)
Q Consensus 764 ~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~ge~ek~I~~lF~~---------------A~k~~Ps 825 (1018)
...++++|.+||||+++|+++.... +.+|+.++|..+.....+. .+|.. ......+
T Consensus 162 ~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~------~lfg~~~~~~~~~~~~~~g~~~~a~~g 235 (441)
T PRK10365 162 EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLES------ELFGHEKGAFTGADKRREGRFVEADGG 235 (441)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHH------HhcCCCCCCcCCCCcCCCCceeECCCC
Confidence 3569999999999999999998765 5799999998765332211 12221 1122468
Q ss_pred EEEecchhhhhhccCCCcchHHHHHHHHHHHhhhcccc-------ccCCCcEEEEEecCCC-------CCCcHHHHhccC
Q 001746 826 IIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLR-------SKESQKILILGATNRP-------FDLDDAVIRRLP 891 (1018)
Q Consensus 826 IIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~-------~~~~~~VlVIaTTN~p-------~~LD~aLlrRFd 891 (1018)
+||||||+.|... +...++..++.-. ......+.+|+||+.+ ..+.+.+..|+.
T Consensus 236 tl~ldei~~l~~~------------~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l~ 303 (441)
T PRK10365 236 TLFLDEIGDISPM------------MQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLN 303 (441)
T ss_pred EEEEeccccCCHH------------HHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhc
Confidence 9999999998432 1223333333211 0011245677777553 124445555552
Q ss_pred ccccccCCCHHHHHH----HHHHHHhcc----CCC-Cccc---HHHHHHHccCCCHHHHHHHHHHHHHH
Q 001746 892 RRIYVDLPDAENRMK----ILRIFLAHE----SLE-SGFQ---FNELANATEGYSGSDLKNLCIAAAYR 948 (1018)
Q Consensus 892 ~~I~V~lPd~eeR~e----ILk~~L~~~----~l~-~dvd---l~~LA~~TeGfSgaDL~~L~~~Aa~~ 948 (1018)
.+.+..|...+|.+ +++.++... ... ..+. +..|....=.-+.++|+++++.|+..
T Consensus 304 -~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~ 371 (441)
T PRK10365 304 -VVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVL 371 (441)
T ss_pred -cceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Confidence 45666777766644 555555432 110 1122 33333322112457888888777653
No 288
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.74 E-value=0.00072 Score=80.05 Aligned_cols=172 Identities=17% Similarity=0.210 Sum_probs=90.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc-------cc------chhhhhhHHHHHHHHHHHHHh----------
Q 001746 765 KGILLFGPPGTGKTLLAKALATEAGANFISITGS-------TL------TSKWFGDAEKLTKALFSFASK---------- 821 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~s-------eL------~s~~~ge~ek~I~~lF~~A~k---------- 821 (1018)
+-+||+||+|||||+.++.+++++|..++....+ .+ ....+...-.........+.+
T Consensus 111 ~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~ 190 (634)
T KOG1970|consen 111 RILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDD 190 (634)
T ss_pred eEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccc
Confidence 4589999999999999999999999988876521 11 111111111111112222211
Q ss_pred --cCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEe-cCCCCCCcHHHHh--------cc
Q 001746 822 --LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGA-TNRPFDLDDAVIR--------RL 890 (1018)
Q Consensus 822 --~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaT-TN~p~~LD~aLlr--------RF 890 (1018)
..+.+|+|||+-..+... ..+..+.++. ++-.. ...+++++.| +..++..++..+. |.
T Consensus 191 ~~~~~~liLveDLPn~~~~d----~~~~f~evL~----~y~s~---g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri 259 (634)
T KOG1970|consen 191 LRTDKKLILVEDLPNQFYRD----DSETFREVLR----LYVSI---GRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRI 259 (634)
T ss_pred cccCceEEEeeccchhhhhh----hHHHHHHHHH----HHHhc---CCCcEEEEEeccccCCCcchhhhchhhhhhccCc
Confidence 246699999997654321 1223333333 22111 1223444433 3333443332111 44
Q ss_pred CccccccCCCHHHHHHHHHHHHhccCCCCc----ccHHHHHHHccCCCHHHHHHHHHHHHHHH
Q 001746 891 PRRIYVDLPDAENRMKILRIFLAHESLESG----FQFNELANATEGYSGSDLKNLCIAAAYRP 949 (1018)
Q Consensus 891 d~~I~V~lPd~eeR~eILk~~L~~~~l~~d----vdl~~LA~~TeGfSgaDL~~L~~~Aa~~A 949 (1018)
..|.|.+-...-..+.|+.++........ -+...+-.++.| +++||+.++..-.+.+
T Consensus 260 -~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i~~~-s~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 260 -SNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVELICQG-SGGDIRSAINSLQLSS 320 (634)
T ss_pred -ceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHHHHHHh-cCccHHHHHhHhhhhc
Confidence 34566666666677777777764433211 122333344444 5678988877766554
No 289
>CHL00181 cbbX CbbX; Provisional
Probab=97.71 E-value=0.00017 Score=80.70 Aligned_cols=98 Identities=12% Similarity=0.149 Sum_probs=67.8
Q ss_pred HHHHHHHhhCCCeEEEEcCchhhhhhccCcchHHHHHHHHHHHHhcCCCCEEEEeeccCCCCCccccccccccccccccc
Q 001746 474 EALCEVLHSTQPLIVYFPDSSLWLSRAVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPNFGRL 553 (1018)
Q Consensus 474 ~~L~e~~~~~~p~Iiff~did~~~~~s~~~~~~~~~~s~~~~~l~~l~g~v~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 553 (1018)
..+|+.+ .+-||||||++.+....-..+...+.+.+|..+|+.-.+.++||++++... .+.
T Consensus 115 ~~~l~~a---~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~-~~~--------------- 175 (287)
T CHL00181 115 KEVLKKA---MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDR-MDK--------------- 175 (287)
T ss_pred HHHHHHc---cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHH-HHH---------------
Confidence 4555554 567999999998743211111234667788888887777888886654211 000
Q ss_pred cCCCCchhhhhcccccCCCcchHHHHhccccEEEEcCCChHHHHHHHHHHHHHH
Q 001746 554 AKLPLPLQRLTEGLKATKRSDDNEIYNLFTNVLSIHPPKEEDLLRTFNKQVEED 607 (1018)
Q Consensus 554 ~~~~~~~~~LvIGmTnR~d~iD~aL~rrFe~~ieI~LPdeegRl~Il~iht~~~ 607 (1018)
+ -.++++|++||+.+|+|++++.+.+.+|++..+++.
T Consensus 176 ---------~--------~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~ 212 (287)
T CHL00181 176 ---------F--------YESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQ 212 (287)
T ss_pred ---------H--------HhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHh
Confidence 0 124589999999999999999999999999987654
No 290
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.69 E-value=0.0017 Score=72.89 Aligned_cols=155 Identities=16% Similarity=0.087 Sum_probs=89.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcE----------------EEEeccccchh-hhhh--HHHHHHHHHHHHHh-
Q 001746 762 RPCKGILLFGPPGTGKTLLAKALATEAGANF----------------ISITGSTLTSK-WFGD--AEKLTKALFSFASK- 821 (1018)
Q Consensus 762 ~p~~gVLL~GPPGTGKT~LArAIA~elg~~f----------------i~Is~seL~s~-~~ge--~ek~I~~lF~~A~k- 821 (1018)
+.+..+||+|| +||+.+|.++|..+-+.- ..-+-+++..- ..|. .-..|+.+-..+..
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 44578999996 689999999998762210 00001111100 0011 12334444443332
Q ss_pred ---cCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHhccCccccccC
Q 001746 822 ---LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDL 898 (1018)
Q Consensus 822 ---~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~l 898 (1018)
....|++||++|.+.. ...|.||..++.- ..++++|.+|+.++.+-+.+++|+ ..+.|+.
T Consensus 100 p~~~~~kV~II~~ad~m~~------------~AaNaLLKtLEEP----p~~t~~iL~t~~~~~lLpTI~SRc-q~i~f~~ 162 (290)
T PRK07276 100 GYEGKQQVFIIKDADKMHV------------NAANSLLKVIEEP----QSEIYIFLLTNDENKVLPTIKSRT-QIFHFPK 162 (290)
T ss_pred cccCCcEEEEeehhhhcCH------------HHHHHHHHHhcCC----CCCeEEEEEECChhhCchHHHHcc-eeeeCCC
Confidence 2346999999999842 2356777777653 345778888888999999999999 6677755
Q ss_pred CCHHHHHHHHHHHHhccCCCCcccHHHHHHHccCCCHHHHHHHHH
Q 001746 899 PDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCI 943 (1018)
Q Consensus 899 Pd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeGfSgaDL~~L~~ 943 (1018)
+.+...+++. ..++..+ ...++....| +......+..
T Consensus 163 -~~~~~~~~L~----~~g~~~~--~a~~la~~~~-s~~~A~~l~~ 199 (290)
T PRK07276 163 -NEAYLIQLLE----QKGLLKT--QAELLAKLAQ-STSEAEKLAQ 199 (290)
T ss_pred -cHHHHHHHHH----HcCCChH--HHHHHHHHCC-CHHHHHHHhC
Confidence 4444444443 3343322 1233334445 5665555553
No 291
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.67 E-value=9.2e-05 Score=79.83 Aligned_cols=22 Identities=45% Similarity=0.629 Sum_probs=20.1
Q ss_pred CceEEEEcCCCChHHHHHHHHH
Q 001746 764 CKGILLFGPPGTGKTLLAKALA 785 (1018)
Q Consensus 764 ~~gVLL~GPPGTGKT~LArAIA 785 (1018)
+..+||||+||+|||++|+.++
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC
Confidence 4569999999999999999997
No 292
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.67 E-value=0.00042 Score=71.22 Aligned_cols=71 Identities=30% Similarity=0.353 Sum_probs=46.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhh------h-----------------------hHH-----
Q 001746 767 ILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWF------G-----------------------DAE----- 809 (1018)
Q Consensus 767 VLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~------g-----------------------e~e----- 809 (1018)
+||+||||||||+|+..++.+. |.+++.++..+-..... | ..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 7999999999999999887764 66776666532211100 0 000
Q ss_pred HHHHHHHHHHHhcCCeEEEecchhhhhh
Q 001746 810 KLTKALFSFASKLAPVIIFVDEVDSLLG 837 (1018)
Q Consensus 810 k~I~~lF~~A~k~~PsIIfIDEID~L~~ 837 (1018)
..+..+...+....|.+|+||++..+..
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 1134444555667899999999998864
No 293
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.65 E-value=0.00091 Score=73.75 Aligned_cols=121 Identities=12% Similarity=0.063 Sum_probs=76.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------------------EEEEeccccchhhhhhHHHHHHHHHHH
Q 001746 761 LRPCKGILLFGPPGTGKTLLAKALATEAGAN----------------------FISITGSTLTSKWFGDAEKLTKALFSF 818 (1018)
Q Consensus 761 ~~p~~gVLL~GPPGTGKT~LArAIA~elg~~----------------------fi~Is~seL~s~~~ge~ek~I~~lF~~ 818 (1018)
..++..+||+||+|+||..+|.++|..+-+. +..+.+.. ..-...+....+..+...
T Consensus 4 ~~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~-~~I~id~ir~l~~~l~~~ 82 (261)
T PRK05818 4 KNKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQK-NPIKKEDALSIINKLNRP 82 (261)
T ss_pred CCCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCc-ccCCHHHHHHHHHHHccC
Confidence 3467889999999999999999999876211 11111110 001112222222222222
Q ss_pred HHh-cCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHhccCcccccc
Q 001746 819 ASK-LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVD 897 (1018)
Q Consensus 819 A~k-~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~ 897 (1018)
+.. ...-|++|+++|.+. ....|.||..++. +..++++|.+|+.++.+.+.+++|+ ..+.++
T Consensus 83 s~e~~~~KV~II~~ae~m~------------~~AaNaLLK~LEE----Pp~~t~fiLit~~~~~lLpTI~SRC-q~~~~~ 145 (261)
T PRK05818 83 SVESNGKKIYIIYGIEKLN------------KQSANSLLKLIEE----PPKNTYGIFTTRNENNILNTILSRC-VQYVVL 145 (261)
T ss_pred chhcCCCEEEEeccHhhhC------------HHHHHHHHHhhcC----CCCCeEEEEEECChHhCchHhhhhe-eeeecC
Confidence 212 234799999999984 2335677777765 2346888889999999999999998 445665
Q ss_pred CC
Q 001746 898 LP 899 (1018)
Q Consensus 898 lP 899 (1018)
.+
T Consensus 146 ~~ 147 (261)
T PRK05818 146 SK 147 (261)
T ss_pred Ch
Confidence 55
No 294
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.65 E-value=0.00071 Score=88.88 Aligned_cols=172 Identities=19% Similarity=0.256 Sum_probs=95.5
Q ss_pred ccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE---EEEeccc----
Q 001746 727 RFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANF---ISITGST---- 799 (1018)
Q Consensus 727 tfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~f---i~Is~se---- 799 (1018)
.++++.|++...+++..++... ....+-|-|+||+|+|||+||+++++.+..+| +.++...
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~------------~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~ 249 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLE------------SEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKS 249 (1153)
T ss_pred ccccccchHHHHHHHHHHHccc------------cCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccc
Confidence 4678999999999998876431 12345688999999999999999998874332 1121100
Q ss_pred --cch-----hh---hhhHHHHHHHH-------------HHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHH
Q 001746 800 --LTS-----KW---FGDAEKLTKAL-------------FSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFM 856 (1018)
Q Consensus 800 --L~s-----~~---~ge~ek~I~~l-------------F~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL 856 (1018)
... .+ ..-....+..+ ....-..++.+|++||++.. ..+..+.
T Consensus 250 ~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~--------------~~l~~L~ 315 (1153)
T PLN03210 250 MEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ--------------DVLDALA 315 (1153)
T ss_pred hhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH--------------HHHHHHH
Confidence 000 00 00000111111 11112346789999998653 1122222
Q ss_pred hhhccccccCCCcEEEEEecCCCCCCcHHHHh--ccCccccccCCCHHHHHHHHHHHHhccCCCCcccH----HHHHHHc
Q 001746 857 SAWDGLRSKESQKILILGATNRPFDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQF----NELANAT 930 (1018)
Q Consensus 857 ~~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlr--RFd~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl----~~LA~~T 930 (1018)
...+.. +....||.||... .+++ ..+..+.++.|+.++..++|..+.-..... ..++ .++++.+
T Consensus 316 ~~~~~~----~~GsrIIiTTrd~-----~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~-~~~~~~l~~~iv~~c 385 (1153)
T PLN03210 316 GQTQWF----GSGSRIIVITKDK-----HFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSP-PDGFMELASEVALRA 385 (1153)
T ss_pred hhCccC----CCCcEEEEEeCcH-----HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHh
Confidence 222111 1223355566643 3332 356778899999999999998876543322 2233 3455666
Q ss_pred cCCC
Q 001746 931 EGYS 934 (1018)
Q Consensus 931 eGfS 934 (1018)
.|..
T Consensus 386 ~GLP 389 (1153)
T PLN03210 386 GNLP 389 (1153)
T ss_pred CCCc
Confidence 6654
No 295
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=97.61 E-value=0.00069 Score=81.71 Aligned_cols=171 Identities=23% Similarity=0.236 Sum_probs=91.9
Q ss_pred cccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE-eccccch--hh--
Q 001746 730 DIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISI-TGSTLTS--KW-- 804 (1018)
Q Consensus 730 DIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~I-s~seL~s--~~-- 804 (1018)
.|-|++++|+-|.-.+.- .....|..++..+.--+|||+|.||||||.|.+.+++-+-.-.+.- .++.-.+ .+
T Consensus 430 sIye~edvKkglLLqLfG--Gt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVt 507 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLFG--GTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVT 507 (804)
T ss_pred hhhcccchhhhHHHHHhc--CCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEE
Confidence 356788888877543322 2222344444455567899999999999999999998773222110 0000000 00
Q ss_pred -hhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHH------hhhccccccCCCcEEEEEecC
Q 001746 805 -FGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFM------SAWDGLRSKESQKILILGATN 877 (1018)
Q Consensus 805 -~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL------~~Ldgl~~~~~~~VlVIaTTN 877 (1018)
-+++.+.+-+.-. .--....|.+|||+|.+... .+.++.+.| ...-|+-..-+.+.-|||++|
T Consensus 508 rd~dtkqlVLesGA-LVLSD~GiCCIDEFDKM~dS---------trSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaAN 577 (804)
T KOG0478|consen 508 KDPDTRQLVLESGA-LVLSDNGICCIDEFDKMSDS---------TRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAAN 577 (804)
T ss_pred ecCccceeeeecCc-EEEcCCceEEchhhhhhhHH---------HHHHHHHHHHHhhhhHhhcceeeeccccceeeeeec
Confidence 0000000000000 00123478999999999432 223332322 222233333344666899988
Q ss_pred CCC-------------CCcHHHHhccCcccc-ccCCCHHHHHHHHHHHH
Q 001746 878 RPF-------------DLDDAVIRRLPRRIY-VDLPDAENRMKILRIFL 912 (1018)
Q Consensus 878 ~p~-------------~LD~aLlrRFd~~I~-V~lPd~eeR~eILk~~L 912 (1018)
... .|++.|++||+.++- +..||...=+.+-.++.
T Consensus 578 P~~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~Hiv 626 (804)
T KOG0478|consen 578 PIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHIV 626 (804)
T ss_pred cccccCCCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHHHH
Confidence 432 288999999986644 46677664445444443
No 296
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.59 E-value=0.0021 Score=70.25 Aligned_cols=174 Identities=23% Similarity=0.241 Sum_probs=102.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecccc-----chhhhhh------------HHHHHHHHHHHHHhc-CC
Q 001746 766 GILLFGPPGTGKTLLAKALATEAG---ANFISITGSTL-----TSKWFGD------------AEKLTKALFSFASKL-AP 824 (1018)
Q Consensus 766 gVLL~GPPGTGKT~LArAIA~elg---~~fi~Is~seL-----~s~~~ge------------~ek~I~~lF~~A~k~-~P 824 (1018)
-+.++|+-|+|||++++|++.-+. .-.+.++...+ ...++.+ .++.-+.+....++. .|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 378999999999999997776653 22334444333 1112111 223333444444443 46
Q ss_pred eEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCc-H---HHHhccCccccccCCC
Q 001746 825 VIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLD-D---AVIRRLPRRIYVDLPD 900 (1018)
Q Consensus 825 sIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~LD-~---aLlrRFd~~I~V~lPd 900 (1018)
.++++||++.+.... -+..+ -|.+.-.+.. ..-.++++|-..--..+- + .+..|+...|.+++.+
T Consensus 133 v~l~vdEah~L~~~~-----le~Lr----ll~nl~~~~~--~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~ 201 (269)
T COG3267 133 VVLMVDEAHDLNDSA-----LEALR----LLTNLEEDSS--KLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLT 201 (269)
T ss_pred eEEeehhHhhhChhH-----HHHHH----HHHhhccccc--CceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcC
Confidence 999999999985331 11111 1211111111 112356665432111111 1 3333887778888889
Q ss_pred HHHHHHHHHHHHhccC----CCCcccHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Q 001746 901 AENRMKILRIFLAHES----LESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQ 951 (1018)
Q Consensus 901 ~eeR~eILk~~L~~~~----l~~dvdl~~LA~~TeGfSgaDL~~L~~~Aa~~Air 951 (1018)
.++-..++++.++.-+ +.++-.+..+...+.| .++-|.++|..|...|..
T Consensus 202 ~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~ 255 (269)
T COG3267 202 EAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYS 255 (269)
T ss_pred hHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHH
Confidence 9989999999887543 3344457778888888 667788888887766654
No 297
>PF14516 AAA_35: AAA-like domain
Probab=97.54 E-value=0.0016 Score=74.43 Aligned_cols=159 Identities=18% Similarity=0.171 Sum_probs=88.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchh-------hhhh------------------------H
Q 001746 763 PCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSK-------WFGD------------------------A 808 (1018)
Q Consensus 763 p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~s~-------~~ge------------------------~ 808 (1018)
+..-+.|+||..+|||+|...+.+.+ |...+.+++..+... +... .
T Consensus 30 ~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~ 109 (331)
T PF14516_consen 30 PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGS 109 (331)
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCC
Confidence 44569999999999999999987766 777888877654221 1000 1
Q ss_pred HHHHHHHHHH---HHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccc-----cCCCcEEEEEecCCCC
Q 001746 809 EKLTKALFSF---ASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRS-----KESQKILILGATNRPF 880 (1018)
Q Consensus 809 ek~I~~lF~~---A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~-----~~~~~VlVIaTTN~p~ 880 (1018)
.......|+. .....|-||+|||||.++.... +...|+..++.... +...++.+|.+...+.
T Consensus 110 ~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~----------~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~ 179 (331)
T PF14516_consen 110 KISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQ----------IADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTED 179 (331)
T ss_pred hhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcc----------hHHHHHHHHHHHHHhcccCcccceEEEEEecCccc
Confidence 1112223332 1224688999999999975421 12334444433221 1122343433332222
Q ss_pred CCcHHHH-hcc--CccccccCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHccCCC
Q 001746 881 DLDDAVI-RRL--PRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYS 934 (1018)
Q Consensus 881 ~LD~aLl-rRF--d~~I~V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeGfS 934 (1018)
.+....- +-| ...+.++.-+.++-..+++.+-.. ... ..++.|-..|.|..
T Consensus 180 ~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~~~-~~~~~l~~~tgGhP 233 (331)
T PF14516_consen 180 YIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE--FSQ-EQLEQLMDWTGGHP 233 (331)
T ss_pred ccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc--CCH-HHHHHHHHHHCCCH
Confidence 2221111 123 334566667888888888776332 222 23888888888854
No 298
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.51 E-value=0.00037 Score=85.55 Aligned_cols=170 Identities=27% Similarity=0.333 Sum_probs=92.7
Q ss_pred cccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEE-Eeccc---c-----
Q 001746 730 DIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFIS-ITGST---L----- 800 (1018)
Q Consensus 730 DIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~-Is~se---L----- 800 (1018)
.|-|.+.+|+.|.-.+.-...+ ....+..++.--+|||.|.||||||.|.+.+++-+-..++. -.+++ |
T Consensus 287 sIyG~e~VKkAilLqLfgGv~k--~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~ 364 (682)
T COG1241 287 SIYGHEDVKKAILLQLFGGVKK--NLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVV 364 (682)
T ss_pred cccCcHHHHHHHHHHhcCCCcc--cCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEEE
Confidence 3678999998886544332211 12223334445679999999999999999999887433322 11111 1
Q ss_pred ----chhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhh-ccccccCCCcEEEEEe
Q 001746 801 ----TSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAW-DGLRSKESQKILILGA 875 (1018)
Q Consensus 801 ----~s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~L-dgl~~~~~~~VlVIaT 875 (1018)
.+.|.-+.-.. .-..++|.+|||+|.+-..-. ......|-++.+..- -|+...-+.+.-|+||
T Consensus 365 rd~~tge~~LeaGAL--------VlAD~Gv~cIDEfdKm~~~dr----~aihEaMEQQtIsIaKAGI~atLnARcsvLAA 432 (682)
T COG1241 365 RDKVTGEWVLEAGAL--------VLADGGVCCIDEFDKMNEEDR----VAIHEAMEQQTISIAKAGITATLNARCSVLAA 432 (682)
T ss_pred EccCCCeEEEeCCEE--------EEecCCEEEEEeccCCChHHH----HHHHHHHHhcEeeecccceeeecchhhhhhhh
Confidence 11111111000 112468999999998732210 011111111111111 1222222345668889
Q ss_pred cCCCC-------------CCcHHHHhccCccccc-cCCCHHHHHHHHHHHHh
Q 001746 876 TNRPF-------------DLDDAVIRRLPRRIYV-DLPDAENRMKILRIFLA 913 (1018)
Q Consensus 876 TN~p~-------------~LD~aLlrRFd~~I~V-~lPd~eeR~eILk~~L~ 913 (1018)
+|..+ .|++.|++|||..+.+ ..|+.+.=..+..+.+.
T Consensus 433 aNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~ 484 (682)
T COG1241 433 ANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILD 484 (682)
T ss_pred hCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHH
Confidence 98765 2788999999976655 34777655555555444
No 299
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.50 E-value=0.0013 Score=74.17 Aligned_cols=123 Identities=11% Similarity=0.084 Sum_probs=81.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC-------------cEEEEe--ccccchhhhhhHHHHHHHHHHHHHh-----cC
Q 001746 764 CKGILLFGPPGTGKTLLAKALATEAGA-------------NFISIT--GSTLTSKWFGDAEKLTKALFSFASK-----LA 823 (1018)
Q Consensus 764 ~~gVLL~GPPGTGKT~LArAIA~elg~-------------~fi~Is--~seL~s~~~ge~ek~I~~lF~~A~k-----~~ 823 (1018)
.+..||+|+.|.||+.+|+++|+.+-+ .++.++ ...+ .-..++.+...... ..
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i-------~vd~Ir~l~~~~~~~~~~~~~ 90 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDL-------SKSEFLSAINKLYFSSFVQSQ 90 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcC-------CHHHHHHHHHHhccCCcccCC
Confidence 456899999999999999999998721 233333 1111 11223333333321 24
Q ss_pred CeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHhccCccccccCCCHHH
Q 001746 824 PVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAEN 903 (1018)
Q Consensus 824 PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~ee 903 (1018)
.-|++||++|.+. ....+.|+..|+.. +..+++|.+|+.+..+-+.+++|+ ..+.+..|+.++
T Consensus 91 ~KvvII~~~e~m~------------~~a~NaLLK~LEEP----p~~t~~il~~~~~~kll~TI~SRc-~~~~f~~l~~~~ 153 (299)
T PRK07132 91 KKILIIKNIEKTS------------NSLLNALLKTIEEP----PKDTYFLLTTKNINKVLPTIVSRC-QVFNVKEPDQQK 153 (299)
T ss_pred ceEEEEecccccC------------HHHHHHHHHHhhCC----CCCeEEEEEeCChHhChHHHHhCe-EEEECCCCCHHH
Confidence 5799999998873 22345777777653 234556666668889999999999 678899998888
Q ss_pred HHHHHHH
Q 001746 904 RMKILRI 910 (1018)
Q Consensus 904 R~eILk~ 910 (1018)
..+.|..
T Consensus 154 l~~~l~~ 160 (299)
T PRK07132 154 ILAKLLS 160 (299)
T ss_pred HHHHHHH
Confidence 7776654
No 300
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.50 E-value=0.00085 Score=77.00 Aligned_cols=204 Identities=16% Similarity=0.222 Sum_probs=109.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcE--EEEeccccchhhh----------------------hhHHHHHHHHH
Q 001746 761 LRPCKGILLFGPPGTGKTLLAKALATEAGANF--ISITGSTLTSKWF----------------------GDAEKLTKALF 816 (1018)
Q Consensus 761 ~~p~~gVLL~GPPGTGKT~LArAIA~elg~~f--i~Is~seL~s~~~----------------------ge~ek~I~~lF 816 (1018)
..+|+||+|||.-|||||+|.-.....+--.. ..+....++.... -..-..|..-+
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~~~i~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~vA~eI 190 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDALPPIWRKQRVHFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPVVADEI 190 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcCCchhhhhhhhHHHHHHHHHHHHHHHHHhccccCccccccccCCccHHHHHHH
Confidence 45789999999999999999988775442100 0111111111000 01111111111
Q ss_pred HHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCC-CCCCcHHHHhccCcccc
Q 001746 817 SFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNR-PFDLDDAVIRRLPRRIY 895 (1018)
Q Consensus 817 ~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~-p~~LD~aLlrRFd~~I~ 895 (1018)
....++|++||+..- .-+..-+++.|+..|- ...|+++||+|+ |++|-..-+.|= ..
T Consensus 191 ----a~ea~lLCFDEfQVT---------DVADAmiL~rLf~~Lf------~~GvVlvATSNR~P~dLYknGlQR~---~F 248 (467)
T KOG2383|consen 191 ----AEEAILLCFDEFQVT---------DVADAMILKRLFEHLF------KNGVVLVATSNRAPEDLYKNGLQRE---NF 248 (467)
T ss_pred ----hhhceeeeechhhhh---------hHHHHHHHHHHHHHHH------hCCeEEEEeCCCChHHHhhcchhhh---hh
Confidence 112479999999652 2223344555555441 236899999986 455655333331 12
Q ss_pred ccCCCHHHHHHHHHHHHhccCCCCcccHHHHHHHcc-C--CCHH-HHHHHHHHHHHHHHHHHHHHHHhcCC---------
Q 001746 896 VDLPDAENRMKILRIFLAHESLESGFQFNELANATE-G--YSGS-DLKNLCIAAAYRPVQELLEEERKRGK--------- 962 (1018)
Q Consensus 896 V~lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~Te-G--fSga-DL~~L~~~Aa~~Airr~~~~~~~~~~--------- 962 (1018)
+| -..+|+..+.-..+.+.+|+...+.-.+ + |.+. |+..++++-.. +....+.....
T Consensus 249 ~P------fI~~L~~rc~vi~ldS~vDYR~~~~~~~~~~yf~~~~d~~~~l~~~fk----~~~~dq~d~~~~~~l~v~GR 318 (467)
T KOG2383|consen 249 IP------FIALLEERCKVIQLDSGVDYRRKAKSAGENYYFISETDVETVLKEWFK----LLAADQNDGTRQRTLVVFGR 318 (467)
T ss_pred hh------HHHHHHHhheEEecCCccchhhccCCCCceeEecChhhHHHHHHHHHH----HHhccCCCCCCCcceeeecc
Confidence 22 1367888888888888999984443222 2 3444 77766654432 11111110000
Q ss_pred ----CC----------CCCCccCCCHHHHHHHHHhhCCCcchhhhhHH
Q 001746 963 ----ND----------AAPVLRPLKLEDFIQSKAKVGPSVAYDAASMN 996 (1018)
Q Consensus 963 ----~~----------~~~~~rpLT~eDF~~Al~kv~PSvs~~~~~m~ 996 (1018)
.. ..-..+|+...|+..-.+.+..-+-++++.|.
T Consensus 319 ~l~vpk~cg~VA~ftFeeLC~rPlgAaDYL~lak~fhti~v~dIP~ls 366 (467)
T KOG2383|consen 319 KLIVPKACGGVADFTFEELCGRPLGAADYLGLAKNFHTIIVRDIPQLS 366 (467)
T ss_pred eEEecccCCCcccccHHHHhCCccchHHHHHHHhhcceeEeeccchhh
Confidence 00 11245788888988877777666555655554
No 301
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=97.49 E-value=0.0007 Score=76.62 Aligned_cols=194 Identities=22% Similarity=0.312 Sum_probs=108.0
Q ss_pred CcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc
Q 001746 725 GVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLT 801 (1018)
Q Consensus 725 ~vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~ 801 (1018)
...|+.+.+.....+.+.+... .+.. .. .++||.|..||||-++|++.-..+ ..||+.++|..+-
T Consensus 200 ~~~F~~~v~~S~~mk~~v~qA~-------k~Am---lD--APLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lP 267 (511)
T COG3283 200 VSGFEQIVAVSPKMKHVVEQAQ-------KLAM---LD--APLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLP 267 (511)
T ss_pred ccchHHHhhccHHHHHHHHHHH-------Hhhc---cC--CCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCc
Confidence 3457777766655544433221 1111 12 349999999999999999976655 6799999998874
Q ss_pred hhh-----hhhH--HHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhc-ccccc------CC
Q 001746 802 SKW-----FGDA--EKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWD-GLRSK------ES 867 (1018)
Q Consensus 802 s~~-----~ge~--ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ld-gl~~~------~~ 867 (1018)
... +|-. ..--..+|+.|.. ..+|+|||..+. .++...|+..+. |.... -.
T Consensus 268 e~~aEsElFG~apg~~gk~GffE~Ang---GTVlLDeIgEmS------------p~lQaKLLRFL~DGtFRRVGee~Ev~ 332 (511)
T COG3283 268 EDAAESELFGHAPGDEGKKGFFEQANG---GTVLLDEIGEMS------------PRLQAKLLRFLNDGTFRRVGEDHEVH 332 (511)
T ss_pred hhHhHHHHhcCCCCCCCccchhhhccC---CeEEeehhhhcC------------HHHHHHHHHHhcCCceeecCCcceEE
Confidence 432 1211 1223456666644 689999998763 333444554443 22111 12
Q ss_pred CcEEEEEecCCC-------CCCcHHHHhccCccccccCCCHHHHHH--------HHHHHHhccCCC-CcccHHHHHHHc-
Q 001746 868 QKILILGATNRP-------FDLDDAVIRRLPRRIYVDLPDAENRMK--------ILRIFLAHESLE-SGFQFNELANAT- 930 (1018)
Q Consensus 868 ~~VlVIaTTN~p-------~~LD~aLlrRFd~~I~V~lPd~eeR~e--------ILk~~L~~~~l~-~dvdl~~LA~~T- 930 (1018)
..|-||+||..+ ..+-+.+.-|. .++.+..|...+|.. ++..+..+.++. +..+-..+-..+
T Consensus 333 vdVRVIcatq~nL~~lv~~g~fReDLfyRL-NVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~ 411 (511)
T COG3283 333 VDVRVICATQVNLVELVQKGKFREDLFYRL-NVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTR 411 (511)
T ss_pred EEEEEEecccccHHHHHhcCchHHHHHHHh-heeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHH
Confidence 368899999654 12334555566 356666777666543 223333333332 333333333333
Q ss_pred cCC--CHHHHHHHHHHHH
Q 001746 931 EGY--SGSDLKNLCIAAA 946 (1018)
Q Consensus 931 eGf--SgaDL~~L~~~Aa 946 (1018)
.++ +.++|+|++-+|+
T Consensus 412 y~WpGNVRqL~N~iyRA~ 429 (511)
T COG3283 412 YAWPGNVRQLKNAIYRAL 429 (511)
T ss_pred cCCCccHHHHHHHHHHHH
Confidence 233 3477777665554
No 302
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.48 E-value=0.00041 Score=78.03 Aligned_cols=159 Identities=25% Similarity=0.358 Sum_probs=93.4
Q ss_pred ccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHH---HhCCcEEEEeccccchh----
Q 001746 731 IGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALAT---EAGANFISITGSTLTSK---- 803 (1018)
Q Consensus 731 IgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~---elg~~fi~Is~seL~s~---- 803 (1018)
+.|..+..+.+.+++.+-.- ..-..+|++.||.|+|||+|...... +.|-+|+.+.....+..
T Consensus 26 l~g~~~~~~~l~~~lkqt~~----------~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~a 95 (408)
T KOG2228|consen 26 LFGVQDEQKHLSELLKQTIL----------HGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIA 95 (408)
T ss_pred eeehHHHHHHHHHHHHHHHH----------hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHH
Confidence 45677777777777644221 11236799999999999988776543 55777766544322111
Q ss_pred -----------------hhhhHHHHHHHHHHHHHh----c-CCeEEEecchhhhhhccCCCcchHHHHHHHHHHH-hhhc
Q 001746 804 -----------------WFGDAEKLTKALFSFASK----L-APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFM-SAWD 860 (1018)
Q Consensus 804 -----------------~~ge~ek~I~~lF~~A~k----~-~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL-~~Ld 860 (1018)
.+|....++..+....++ . .+.|.++||||.+++.. .++++ .++|
T Consensus 96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~------------rQtllYnlfD 163 (408)
T KOG2228|consen 96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS------------RQTLLYNLFD 163 (408)
T ss_pred HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch------------hhHHHHHHHH
Confidence 112222222222222211 1 23345567899987542 12333 3333
Q ss_pred cccccCCCcEEEEEecCCCCC---CcHHHHhccCcc-ccccC-CCHHHHHHHHHHHH
Q 001746 861 GLRSKESQKILILGATNRPFD---LDDAVIRRLPRR-IYVDL-PDAENRMKILRIFL 912 (1018)
Q Consensus 861 gl~~~~~~~VlVIaTTN~p~~---LD~aLlrRFd~~-I~V~l-Pd~eeR~eILk~~L 912 (1018)
-.. ....++.|||.|.+.+. |...+.+||..+ |++.+ ...++-..+++..+
T Consensus 164 isq-s~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 164 ISQ-SARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHh-hcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 322 23458999999877765 556888899876 55543 46788888888887
No 303
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.45 E-value=0.00015 Score=91.19 Aligned_cols=162 Identities=21% Similarity=0.254 Sum_probs=104.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhhh-----h--HHHHHHHHH---HHHHh-cCC-eEEEecchh
Q 001746 766 GILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFG-----D--AEKLTKALF---SFASK-LAP-VIIFVDEVD 833 (1018)
Q Consensus 766 gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~s~~~g-----e--~ek~I~~lF---~~A~k-~~P-sIIfIDEID 833 (1018)
.+|++||||.|||+.+.++|.++|+.++.++.++.-++... + ....+...| ..... ... .||++||+|
T Consensus 359 ~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD 438 (871)
T KOG1968|consen 359 ALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVD 438 (871)
T ss_pred HHHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccc
Confidence 37999999999999999999999999999999876544322 1 112233333 00000 012 399999999
Q ss_pred hhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHHHHHh
Q 001746 834 SLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLA 913 (1018)
Q Consensus 834 ~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~ 913 (1018)
.+.+ .. +..+.++...... ..+-||+++|.........+.+....++|+.|+.+.+..-+..++.
T Consensus 439 ~~~~-~d--------Rg~v~~l~~l~~k------s~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~ 503 (871)
T KOG1968|consen 439 GMFG-ED--------RGGVSKLSSLCKK------SSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICK 503 (871)
T ss_pred cccc-hh--------hhhHHHHHHHHHh------ccCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhc
Confidence 9875 11 2223333333321 1344777888777666544555446689999999999988888887
Q ss_pred ccCCC-CcccHHHHHHHccCCCHHHHHHHHHHHH
Q 001746 914 HESLE-SGFQFNELANATEGYSGSDLKNLCIAAA 946 (1018)
Q Consensus 914 ~~~l~-~dvdl~~LA~~TeGfSgaDL~~L~~~Aa 946 (1018)
.+.+. .+-.++.+.+.+ ++||++.+..-.
T Consensus 504 se~~ki~~~~l~~~s~~~----~~DiR~~i~~lq 533 (871)
T KOG1968|consen 504 SEGIKISDDVLEEISKLS----GGDIRQIIMQLQ 533 (871)
T ss_pred ccceecCcHHHHHHHHhc----ccCHHHHHHHHh
Confidence 65543 333466666644 788887765443
No 304
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.44 E-value=0.0011 Score=78.81 Aligned_cols=78 Identities=23% Similarity=0.385 Sum_probs=56.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhhh--------------HHHHHHHHHHHHHhcC
Q 001746 761 LRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFGD--------------AEKLTKALFSFASKLA 823 (1018)
Q Consensus 761 ~~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~ge--------------~ek~I~~lF~~A~k~~ 823 (1018)
+.+..-+||+|+||+|||+|+..+|... +.++++++..+-....... .+..+..++.......
T Consensus 77 i~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~ 156 (446)
T PRK11823 77 LVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEEK 156 (446)
T ss_pred ccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhhC
Confidence 5566779999999999999999998765 6788888775543221110 1122455666667778
Q ss_pred CeEEEecchhhhhhc
Q 001746 824 PVIIFVDEVDSLLGA 838 (1018)
Q Consensus 824 PsIIfIDEID~L~~~ 838 (1018)
|.+|+||.|..+...
T Consensus 157 ~~lVVIDSIq~l~~~ 171 (446)
T PRK11823 157 PDLVVIDSIQTMYSP 171 (446)
T ss_pred CCEEEEechhhhccc
Confidence 999999999988653
No 305
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.42 E-value=0.0063 Score=72.05 Aligned_cols=199 Identities=19% Similarity=0.213 Sum_probs=98.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchh-------h--------hh-----hHHHHHHHHHHHH
Q 001746 763 PCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSK-------W--------FG-----DAEKLTKALFSFA 819 (1018)
Q Consensus 763 p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~s~-------~--------~g-----e~ek~I~~lF~~A 819 (1018)
++..|+|+|++|+|||+++..+|..+ |..+..+++...... + .+ .....+......+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 46779999999999999999999877 556665655433110 0 00 1122334444444
Q ss_pred HhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHhccCccc-----
Q 001746 820 SKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRI----- 894 (1018)
Q Consensus 820 ~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I----- 894 (1018)
... .+|+||...++.. ...++.++.....-. .+...++|+-++...+.++. .++|...+
T Consensus 174 ~~~--DvVIIDTAGr~~~----------d~~lm~El~~l~~~~--~pdevlLVvda~~gq~av~~--a~~F~~~l~i~gv 237 (437)
T PRK00771 174 KKA--DVIIVDTAGRHAL----------EEDLIEEMKEIKEAV--KPDEVLLVIDATIGQQAKNQ--AKAFHEAVGIGGI 237 (437)
T ss_pred hcC--CEEEEECCCcccc----------hHHHHHHHHHHHHHh--cccceeEEEeccccHHHHHH--HHHHHhcCCCCEE
Confidence 433 7899998866421 122233333322222 12334555555443322222 23343222
Q ss_pred cccCCCHHHHHH-HHHHHHh-c---------cCCC--CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001746 895 YVDLPDAENRMK-ILRIFLA-H---------ESLE--SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKRG 961 (1018)
Q Consensus 895 ~V~lPd~eeR~e-ILk~~L~-~---------~~l~--~dvdl~~LA~~TeGfSgaDL~~L~~~Aa~~Airr~~~~~~~~~ 961 (1018)
.+...|...|.- +|..... + +.++ ..++.+.++.+.-| -+|+..|++.|... +.+...+.....
T Consensus 238 IlTKlD~~a~~G~~ls~~~~~~~Pi~fig~Ge~v~Dle~f~~~~~~~~ilg--mgd~~~l~e~~~~~-~~~~~~~~~~~~ 314 (437)
T PRK00771 238 IITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLG--MGDLESLLEKVEEA-LDEEEEEKDVEK 314 (437)
T ss_pred EEecccCCCcccHHHHHHHHHCcCEEEEecCCCcccCCcCCHHHHHHHHhC--CCChHHHHHHHHHh-hhHHHHHHHHHH
Confidence 223333332222 2222211 1 1111 33456777777654 36888888876542 221100000000
Q ss_pred CCCCCCCccCCCHHHHHHHHHhhC
Q 001746 962 KNDAAPVLRPLKLEDFIQSKAKVG 985 (1018)
Q Consensus 962 ~~~~~~~~rpLT~eDF~~Al~kv~ 985 (1018)
.. ....|++||...+++++
T Consensus 315 ~~-----~~~f~l~d~~~q~~~~~ 333 (437)
T PRK00771 315 MM-----KGKFTLKDMYKQLEAMN 333 (437)
T ss_pred HH-----cCCcCHHHHHHHHHHHH
Confidence 00 12479999998887766
No 306
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.42 E-value=0.002 Score=66.18 Aligned_cols=25 Identities=36% Similarity=0.563 Sum_probs=22.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 001746 764 CKGILLFGPPGTGKTLLAKALATEA 788 (1018)
Q Consensus 764 ~~gVLL~GPPGTGKT~LArAIA~el 788 (1018)
...|+++|+||+|||+++.-||..+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 3569999999999999999999877
No 307
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.39 E-value=4.9e-05 Score=86.63 Aligned_cols=163 Identities=27% Similarity=0.374 Sum_probs=80.5
Q ss_pred cccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc-----c----
Q 001746 730 DIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGST-----L---- 800 (1018)
Q Consensus 730 DIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~se-----L---- 800 (1018)
.|.|.+.+|..+.-.+....... ...+...+...+|||.|.||||||.|.+.+++-+...++ +++.. |
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~~--~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v~-~~g~~~s~~gLta~~ 101 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEKN--DPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSVY-TSGKGSSAAGLTASV 101 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SCC--CCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEEE-EECCGSTCCCCCEEE
T ss_pred cCcCcHHHHHHHHHHHHhccccc--cccccccccccceeeccchhhhHHHHHHHHHhhCCceEE-ECCCCcccCCcccee
Confidence 46788888777633221111110 011112344567999999999999999988765533332 22211 1
Q ss_pred -----chhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhcc---------ccccC
Q 001746 801 -----TSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDG---------LRSKE 866 (1018)
Q Consensus 801 -----~s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldg---------l~~~~ 866 (1018)
.+.|.-+. ..+-.| ...|++|||+|.+-.. . ...++..|+. +...-
T Consensus 102 ~~d~~~~~~~lea-----Galvla---d~GiccIDe~dk~~~~---------~---~~~l~eaMEqq~isi~kagi~~~l 161 (331)
T PF00493_consen 102 SRDPVTGEWVLEA-----GALVLA---DGGICCIDEFDKMKED---------D---RDALHEAMEQQTISIAKAGIVTTL 161 (331)
T ss_dssp CCCGGTSSECEEE------HHHHC---TTSEEEECTTTT--CH---------H---HHHHHHHHHCSCEEECTSSSEEEE
T ss_pred ccccccceeEEeC-----Cchhcc---cCceeeecccccccch---------H---HHHHHHHHHcCeeccchhhhcccc
Confidence 11121111 122233 3489999999998421 1 1222322321 11112
Q ss_pred CCcEEEEEecCCCC-------------CCcHHHHhccCccccc-cCCCHHHHHHHHHHHHhcc
Q 001746 867 SQKILILGATNRPF-------------DLDDAVIRRLPRRIYV-DLPDAENRMKILRIFLAHE 915 (1018)
Q Consensus 867 ~~~VlVIaTTN~p~-------------~LD~aLlrRFd~~I~V-~lPd~eeR~eILk~~L~~~ 915 (1018)
+.+.-|+|++|... .+++.+++|||..+.+ ..|+.+.-..+.++.+...
T Consensus 162 ~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~ 224 (331)
T PF00493_consen 162 NARCSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSH 224 (331)
T ss_dssp E---EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT
T ss_pred cchhhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEecc
Confidence 34667899998665 3778999999977654 6688777777777766543
No 308
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.39 E-value=0.0014 Score=75.93 Aligned_cols=78 Identities=24% Similarity=0.428 Sum_probs=54.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhh------h--------hHHHHHHHHHHHHHhcC
Q 001746 761 LRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWF------G--------DAEKLTKALFSFASKLA 823 (1018)
Q Consensus 761 ~~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~------g--------e~ek~I~~lF~~A~k~~ 823 (1018)
+.+..-+||+|+||+|||+|+..+|... +.++++++..+-..... + ..+..+..++..+....
T Consensus 79 i~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~ 158 (372)
T cd01121 79 LVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELK 158 (372)
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcC
Confidence 5566679999999999999999998765 45777777654322110 0 01223455666667778
Q ss_pred CeEEEecchhhhhhc
Q 001746 824 PVIIFVDEVDSLLGA 838 (1018)
Q Consensus 824 PsIIfIDEID~L~~~ 838 (1018)
|.+|+||+|..+...
T Consensus 159 ~~lVVIDSIq~l~~~ 173 (372)
T cd01121 159 PDLVIIDSIQTVYSS 173 (372)
T ss_pred CcEEEEcchHHhhcc
Confidence 999999999998643
No 309
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.38 E-value=0.0013 Score=70.29 Aligned_cols=77 Identities=27% Similarity=0.388 Sum_probs=50.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhhh-----------------------hHHHHHHH
Q 001746 761 LRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWFG-----------------------DAEKLTKA 814 (1018)
Q Consensus 761 ~~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~g-----------------------e~ek~I~~ 814 (1018)
+.+..-++|+||||+|||++|..+|.+. +.++++++...+...... +....+..
T Consensus 20 i~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 99 (225)
T PRK09361 20 FERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQIAGEDFEELLSNIIIFEPSSFEEQSEAIRK 99 (225)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhhChHhHhhCeEEEeCCCHHHHHHHHHH
Confidence 4556678999999999999999998755 678888887632111110 11111222
Q ss_pred HHHHHHhcCCeEEEecchhhhhhc
Q 001746 815 LFSFASKLAPVIIFVDEVDSLLGA 838 (1018)
Q Consensus 815 lF~~A~k~~PsIIfIDEID~L~~~ 838 (1018)
+..... ..+.+|+||.+..+...
T Consensus 100 ~~~~~~-~~~~lvVIDsi~al~~~ 122 (225)
T PRK09361 100 AEKLAK-ENVGLIVLDSATSLYRL 122 (225)
T ss_pred HHHHHH-hcccEEEEeCcHHHhHH
Confidence 222222 57899999999988643
No 310
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.35 E-value=0.0002 Score=68.28 Aligned_cols=23 Identities=52% Similarity=0.901 Sum_probs=21.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHhC
Q 001746 767 ILLFGPPGTGKTLLAKALATEAG 789 (1018)
Q Consensus 767 VLL~GPPGTGKT~LArAIA~elg 789 (1018)
|.|+||||+|||+||+.||..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998874
No 311
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.33 E-value=0.00019 Score=68.64 Aligned_cols=31 Identities=48% Similarity=0.797 Sum_probs=28.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 001746 767 ILLFGPPGTGKTLLAKALATEAGANFISITG 797 (1018)
Q Consensus 767 VLL~GPPGTGKT~LArAIA~elg~~fi~Is~ 797 (1018)
|+|.||||+|||++|+.||..+|++++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999988876654
No 312
>PHA02624 large T antigen; Provisional
Probab=97.30 E-value=0.00032 Score=84.58 Aligned_cols=38 Identities=29% Similarity=0.361 Sum_probs=32.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 001746 762 RPCKGILLFGPPGTGKTLLAKALATEAGANFISITGST 799 (1018)
Q Consensus 762 ~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~se 799 (1018)
...+.+||+||||||||+++.+|++.++...+.++++.
T Consensus 429 PKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt 466 (647)
T PHA02624 429 PKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPP 466 (647)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCc
Confidence 33457999999999999999999999977777787655
No 313
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.28 E-value=0.0015 Score=74.36 Aligned_cols=78 Identities=27% Similarity=0.256 Sum_probs=53.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccch----------------hhhhhHHHHHHHHHHHHHh
Q 001746 761 LRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTS----------------KWFGDAEKLTKALFSFASK 821 (1018)
Q Consensus 761 ~~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~s----------------~~~ge~ek~I~~lF~~A~k 821 (1018)
+.+..-++|+||||||||+||..++.+. |.+++.++...... ......+..+..+....+.
T Consensus 52 lp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~ 131 (321)
T TIGR02012 52 LPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRS 131 (321)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhc
Confidence 5566779999999999999988876654 66777776543211 0111234445555555566
Q ss_pred cCCeEEEecchhhhhhc
Q 001746 822 LAPVIIFVDEVDSLLGA 838 (1018)
Q Consensus 822 ~~PsIIfIDEID~L~~~ 838 (1018)
..+.+|+||-+..+.+.
T Consensus 132 ~~~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 132 GAVDIIVVDSVAALVPK 148 (321)
T ss_pred cCCcEEEEcchhhhccc
Confidence 78999999999998753
No 314
>PHA00729 NTP-binding motif containing protein
Probab=97.28 E-value=0.00037 Score=75.41 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=24.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc
Q 001746 765 KGILLFGPPGTGKTLLAKALATEAGAN 791 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~elg~~ 791 (1018)
.+|+|+|+||||||+||.+||+.++..
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~ 44 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWK 44 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 379999999999999999999998643
No 315
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.27 E-value=0.0059 Score=68.21 Aligned_cols=95 Identities=19% Similarity=0.230 Sum_probs=56.2
Q ss_pred ccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---C--CcEEE-----Eecc--
Q 001746 731 IGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA---G--ANFIS-----ITGS-- 798 (1018)
Q Consensus 731 IgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~el---g--~~fi~-----Is~s-- 798 (1018)
|.|+.-+++.+-..+...+.++. -+.|-.+=|||++||||.++++.||+.+ | .+++. .+.+
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~-------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~ 156 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPN-------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHA 156 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCC-------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCCh
Confidence 45566666666655554443332 1223345588999999999999999987 2 23322 1111
Q ss_pred ccchhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhh
Q 001746 799 TLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSL 835 (1018)
Q Consensus 799 eL~s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L 835 (1018)
.-+..|-. +.-..+-..+...+.+|.++||+|.|
T Consensus 157 ~~ie~Yk~---eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 157 SKIEDYKE---ELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred HHHHHHHH---HHHHHHHHHHHhcCCceEEechhhhc
Confidence 11222222 33334444455677799999999998
No 316
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.22 E-value=0.0027 Score=67.53 Aligned_cols=75 Identities=29% Similarity=0.434 Sum_probs=48.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhh-----------------------hhHHHHHHH
Q 001746 761 LRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWF-----------------------GDAEKLTKA 814 (1018)
Q Consensus 761 ~~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~-----------------------ge~ek~I~~ 814 (1018)
+.+..-++|+|+||+|||+++..+|.+. |.++++++......... .+....+..
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (218)
T cd01394 16 VERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIAGDRPERAASSIIVFEPMDFNEQGRAIQE 95 (218)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHhHChHhhhcCEEEEeCCCHHHHHHHHHH
Confidence 4556679999999999999999998775 56777776543211100 011122233
Q ss_pred HHHHHHhcCCeEEEecchhhhh
Q 001746 815 LFSFASKLAPVIIFVDEVDSLL 836 (1018)
Q Consensus 815 lF~~A~k~~PsIIfIDEID~L~ 836 (1018)
+..... ..+.+|+||-+..+.
T Consensus 96 ~~~~~~-~~~~lvvIDsi~~l~ 116 (218)
T cd01394 96 TETFAD-EKVDLVVVDSATALY 116 (218)
T ss_pred HHHHHh-cCCcEEEEechHHhh
Confidence 333332 248999999999885
No 317
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.17 E-value=0.00069 Score=71.30 Aligned_cols=122 Identities=16% Similarity=0.143 Sum_probs=57.7
Q ss_pred EEEEcCCCChHHHHHHHH-HHHh---CCcEEEEeccccchhhhhh----HHH-------------HHHHHHHHHHhcCCe
Q 001746 767 ILLFGPPGTGKTLLAKAL-ATEA---GANFISITGSTLTSKWFGD----AEK-------------LTKALFSFASKLAPV 825 (1018)
Q Consensus 767 VLL~GPPGTGKT~LArAI-A~el---g~~fi~Is~seL~s~~~ge----~ek-------------~I~~lF~~A~k~~Ps 825 (1018)
.|++|.||+|||+.|-.. .... |.+++. +...|.-..... ... ...........-..+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 689999999999988666 4443 666554 433221111110 000 001111111111578
Q ss_pred EEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHhccCccccccC
Q 001746 826 IIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDL 898 (1018)
Q Consensus 826 IIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~l 898 (1018)
+|+|||+..+++.+.... ......+ +++...+ ...+-||.+|..+..+|..++...+..+++..
T Consensus 82 liviDEa~~~~~~r~~~~--~~~~~~~-~~l~~hR------h~g~diiliTQ~~~~id~~ir~lve~~~~~~k 145 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKG--KKVPEII-EFLAQHR------HYGWDIILITQSPSQIDKFIRDLVEYHYHCRK 145 (193)
T ss_dssp EEEETTGGGTSB---T-T------HHH-HGGGGCC------CTT-EEEEEES-GGGB-HHHHCCEEEEEEEEE
T ss_pred EEEEECChhhcCCCcccc--ccchHHH-HHHHHhC------cCCcEEEEEeCCHHHHhHHHHHHHheEEEEEe
Confidence 999999999988775421 1112333 3333321 23567888999999999999886665555543
No 318
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.15 E-value=0.00098 Score=72.03 Aligned_cols=88 Identities=16% Similarity=0.206 Sum_probs=50.9
Q ss_pred CeEEEEcCchhhhhhccCcchHHHHHHHHHHHHhcCCCCEEEEeeccCCC-CCccccccccccccccccccCCCCchhhh
Q 001746 485 PLIVYFPDSSLWLSRAVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNE-TGPKEKEKFTMILPNFGRLAKLPLPLQRL 563 (1018)
Q Consensus 485 p~Iiff~did~~~~~s~~~~~~~~~~s~~~~~l~~l~g~v~vi~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 563 (1018)
.-|||+|||-.+-.. +++-++. .|+ +|.+-||.|..... ...-.+.+++
T Consensus 102 ~~ILFIDEIHRlnk~-----~qe~Llp----amE--d~~idiiiG~g~~ar~~~~~l~~FT------------------- 151 (233)
T PF05496_consen 102 GDILFIDEIHRLNKA-----QQEILLP----AME--DGKIDIIIGKGPNARSIRINLPPFT------------------- 151 (233)
T ss_dssp T-EEEECTCCC--HH-----HHHHHHH----HHH--CSEEEEEBSSSSS-BEEEEE----E-------------------
T ss_pred CcEEEEechhhccHH-----HHHHHHH----Hhc--cCeEEEEeccccccceeeccCCCce-------------------
Confidence 459999999976322 2233333 344 58884444443111 1111122333
Q ss_pred hcccccCCCcchHHHHhccccEEEEcCCChHHHHHHHHH
Q 001746 564 TEGLKATKRSDDNEIYNLFTNVLSIHPPKEEDLLRTFNK 602 (1018)
Q Consensus 564 vIGmTnR~d~iD~aL~rrFe~~ieI~LPdeegRl~Il~i 602 (1018)
+||+|.|..++...|+.||.....+..=+.+.-.+|++.
T Consensus 152 ligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r 190 (233)
T PF05496_consen 152 LIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKR 190 (233)
T ss_dssp EEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHH
T ss_pred EeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHH
Confidence 789999999999999999999888887777777777754
No 319
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.15 E-value=0.0031 Score=81.35 Aligned_cols=136 Identities=25% Similarity=0.314 Sum_probs=87.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch--hhhh-----h--HHHH-HHHHHHHHHhcCCeEEEecchh
Q 001746 764 CKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS--KWFG-----D--AEKL-TKALFSFASKLAPVIIFVDEVD 833 (1018)
Q Consensus 764 ~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~s--~~~g-----e--~ek~-I~~lF~~A~k~~PsIIfIDEID 833 (1018)
.+++||.|.||+|||+|..|+|++.|-.++.++.++-.. +.+| + .+-. ...-|-.|.+ ...-|++||+.
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr-~G~WVlLDEiN 1621 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMR-DGGWVLLDEIN 1621 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhh-cCCEEEeehhh
Confidence 367999999999999999999999999999998875321 1222 1 1111 2223444433 34678899996
Q ss_pred hhhhccCCCcchHHHHHHHHHHHhhhc---ccccc-------CCCcEEEEEecCCCCC------CcHHHHhccCcccccc
Q 001746 834 SLLGARGGAFEHEATRRMRNEFMSAWD---GLRSK-------ESQKILILGATNRPFD------LDDAVIRRLPRRIYVD 897 (1018)
Q Consensus 834 ~L~~~r~~~~~~e~~~~il~~LL~~Ld---gl~~~-------~~~~VlVIaTTN~p~~------LD~aLlrRFd~~I~V~ 897 (1018)
.- +..++.-|-..|| ...-+ -..+..|.||-|..+. |+..++.|| .++.+.
T Consensus 1622 La------------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRF-svV~~d 1688 (4600)
T COG5271 1622 LA------------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRF-SVVKMD 1688 (4600)
T ss_pred hh------------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhh-heEEec
Confidence 43 1223333333333 11111 2345778888776543 999999999 467788
Q ss_pred CCCHHHHHHHHHHHHh
Q 001746 898 LPDAENRMKILRIFLA 913 (1018)
Q Consensus 898 lPd~eeR~eILk~~L~ 913 (1018)
..+.+....|......
T Consensus 1689 ~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1689 GLTTDDITHIANKMYP 1704 (4600)
T ss_pred ccccchHHHHHHhhCC
Confidence 8888877777776654
No 320
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.15 E-value=0.0043 Score=67.34 Aligned_cols=39 Identities=28% Similarity=0.452 Sum_probs=30.0
Q ss_pred CCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001746 758 GNLLRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITG 797 (1018)
Q Consensus 758 ~gl~~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~ 797 (1018)
+| +.+...+||+||||+|||.||..++.+. |-+.++++.
T Consensus 16 GG-~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ 57 (237)
T TIGR03877 16 GG-IPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL 57 (237)
T ss_pred CC-CcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 44 5677889999999999999998876543 666666654
No 321
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.13 E-value=0.0031 Score=68.40 Aligned_cols=76 Identities=24% Similarity=0.348 Sum_probs=49.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhh-------------------------------h
Q 001746 761 LRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWF-------------------------------G 806 (1018)
Q Consensus 761 ~~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~-------------------------------g 806 (1018)
+.+...++|.||||||||+++..++... |...++++..+-..... .
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~ 100 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNS 100 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChH
Confidence 4555679999999999999986665544 56666665432111000 0
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEecchhhhh
Q 001746 807 DAEKLTKALFSFASKLAPVIIFVDEVDSLL 836 (1018)
Q Consensus 807 e~ek~I~~lF~~A~k~~PsIIfIDEID~L~ 836 (1018)
+.+..+..+...+....|.+++||++-.+.
T Consensus 101 ~~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 101 EKRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 113444555555555679999999998875
No 322
>PRK08118 topology modulation protein; Reviewed
Probab=97.12 E-value=0.00085 Score=69.22 Aligned_cols=32 Identities=28% Similarity=0.493 Sum_probs=29.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 001746 766 GILLFGPPGTGKTLLAKALATEAGANFISITG 797 (1018)
Q Consensus 766 gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~ 797 (1018)
.|++.||||+|||+||+.|++.++.+++.++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 59999999999999999999999999988774
No 323
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.12 E-value=0.0023 Score=72.84 Aligned_cols=78 Identities=26% Similarity=0.246 Sum_probs=53.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccch----------------hhhhhHHHHHHHHHHHHHh
Q 001746 761 LRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTS----------------KWFGDAEKLTKALFSFASK 821 (1018)
Q Consensus 761 ~~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~s----------------~~~ge~ek~I~~lF~~A~k 821 (1018)
+.+.+-++|+||||||||+||-.++.+. |...++++...-.. ......+..+..+-..++.
T Consensus 52 lp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s 131 (325)
T cd00983 52 YPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRS 131 (325)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhc
Confidence 5556678999999999999999887554 67777777633111 0111234444444444566
Q ss_pred cCCeEEEecchhhhhhc
Q 001746 822 LAPVIIFVDEVDSLLGA 838 (1018)
Q Consensus 822 ~~PsIIfIDEID~L~~~ 838 (1018)
..+.+|+||-+-.+.+.
T Consensus 132 ~~~~lIVIDSvaal~~~ 148 (325)
T cd00983 132 GAVDLIVVDSVAALVPK 148 (325)
T ss_pred cCCCEEEEcchHhhccc
Confidence 78899999999998753
No 324
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.09 E-value=0.00054 Score=69.29 Aligned_cols=33 Identities=33% Similarity=0.542 Sum_probs=29.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001746 763 PCKGILLFGPPGTGKTLLAKALATEAGANFISI 795 (1018)
Q Consensus 763 p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~I 795 (1018)
++..|+|+|+||||||++|+++|..++++++..
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~ 35 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT 35 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 456799999999999999999999999988854
No 325
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.07 E-value=0.0086 Score=76.31 Aligned_cols=153 Identities=16% Similarity=0.197 Sum_probs=80.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc--ccc-hhhhh---------------------------hHHHHHH
Q 001746 764 CKGILLFGPPGTGKTLLAKALATEAGANFISITGS--TLT-SKWFG---------------------------DAEKLTK 813 (1018)
Q Consensus 764 ~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~s--eL~-s~~~g---------------------------e~ek~I~ 813 (1018)
.+-++|+||+|.|||+++...++..+ ++.-++.. +-. ..+.. .....+.
T Consensus 32 ~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (903)
T PRK04841 32 YRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFA 110 (903)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHH
Confidence 34599999999999999999988776 55544432 210 00000 0011223
Q ss_pred HHHHHHHh-cCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHhccCc
Q 001746 814 ALFSFASK-LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPR 892 (1018)
Q Consensus 814 ~lF~~A~k-~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~ 892 (1018)
.++..... ..|.+|+|||++.+-. ......+..|+. .. +...++|| ++.....+.-.-++.-+.
T Consensus 111 ~~~~~l~~~~~~~~lvlDD~h~~~~--------~~~~~~l~~l~~---~~---~~~~~lv~-~sR~~~~~~~~~l~~~~~ 175 (903)
T PRK04841 111 QLFIELADWHQPLYLVIDDYHLITN--------PEIHEAMRFFLR---HQ---PENLTLVV-LSRNLPPLGIANLRVRDQ 175 (903)
T ss_pred HHHHHHhcCCCCEEEEEeCcCcCCC--------hHHHHHHHHHHH---hC---CCCeEEEE-EeCCCCCCchHhHHhcCc
Confidence 33333222 5689999999998721 112223333333 22 22234444 453322232111111112
Q ss_pred ccccc----CCCHHHHHHHHHHHHhccCCCCcccHHHHHHHccCCC
Q 001746 893 RIYVD----LPDAENRMKILRIFLAHESLESGFQFNELANATEGYS 934 (1018)
Q Consensus 893 ~I~V~----lPd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeGfS 934 (1018)
.+.+. ..+.++-.+++...+.. .+ +..++..|.+.|+|+.
T Consensus 176 ~~~l~~~~l~f~~~e~~~ll~~~~~~-~~-~~~~~~~l~~~t~Gwp 219 (903)
T PRK04841 176 LLEIGSQQLAFDHQEAQQFFDQRLSS-PI-EAAESSRLCDDVEGWA 219 (903)
T ss_pred ceecCHHhCCCCHHHHHHHHHhccCC-CC-CHHHHHHHHHHhCChH
Confidence 23343 55888888888765432 22 3445777888888864
No 326
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.06 E-value=0.0039 Score=67.21 Aligned_cols=76 Identities=24% Similarity=0.335 Sum_probs=50.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhh--------------------------------
Q 001746 761 LRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWF-------------------------------- 805 (1018)
Q Consensus 761 ~~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~-------------------------------- 805 (1018)
+.+...++++|+||+|||+|+.+++.+. |.++++++..+-...+.
T Consensus 22 ~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~ 101 (234)
T PRK06067 22 IPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFEWN 101 (234)
T ss_pred CcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccccccC
Confidence 5666779999999999999999997653 66776666533211100
Q ss_pred -hhHHHHHHHHHHHHHhcCCeEEEecchhhhh
Q 001746 806 -GDAEKLTKALFSFASKLAPVIIFVDEVDSLL 836 (1018)
Q Consensus 806 -ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~ 836 (1018)
......+..+-.......|.+|+||++..+.
T Consensus 102 ~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 102 STLANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred cchHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 0112333444444455688999999998774
No 327
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.03 E-value=0.0019 Score=65.82 Aligned_cols=59 Identities=27% Similarity=0.327 Sum_probs=36.5
Q ss_pred ccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---EEEEecccc
Q 001746 731 IGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGAN---FISITGSTL 800 (1018)
Q Consensus 731 IgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~---fi~Is~seL 800 (1018)
+.|.++..++|..++. .. . ...++.++|+|++|+|||+|+++++..+..+ ++.+.+...
T Consensus 2 fvgR~~e~~~l~~~l~-~~-------~---~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-AA-------Q---SGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTG-GT-------S---S-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHH-HH-------H---cCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 4677888888877663 11 1 2334779999999999999999998877333 777666554
No 328
>PHA02774 E1; Provisional
Probab=96.98 E-value=0.0049 Score=74.49 Aligned_cols=33 Identities=27% Similarity=0.581 Sum_probs=27.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEE-Ee
Q 001746 764 CKGILLFGPPGTGKTLLAKALATEAGANFIS-IT 796 (1018)
Q Consensus 764 ~~gVLL~GPPGTGKT~LArAIA~elg~~fi~-Is 796 (1018)
.+.++|+||||||||++|.+|++.++..++. ++
T Consensus 434 knciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN 467 (613)
T PHA02774 434 KNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVN 467 (613)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEE
Confidence 3579999999999999999999999655544 44
No 329
>PRK07261 topology modulation protein; Provisional
Probab=96.97 E-value=0.0016 Score=67.39 Aligned_cols=34 Identities=24% Similarity=0.408 Sum_probs=29.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 001746 766 GILLFGPPGTGKTLLAKALATEAGANFISITGST 799 (1018)
Q Consensus 766 gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~se 799 (1018)
.|+|.|+||+|||+||+.|+..++.+++.++.-.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~ 35 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLH 35 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEE
Confidence 4899999999999999999999999988776533
No 330
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.96 E-value=0.0071 Score=62.80 Aligned_cols=92 Identities=17% Similarity=0.150 Sum_probs=55.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhhhhHHH--------------------HHHHHHHHHHhcCCe
Q 001746 766 GILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEK--------------------LTKALFSFASKLAPV 825 (1018)
Q Consensus 766 gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~s~~~ge~ek--------------------~I~~lF~~A~k~~Ps 825 (1018)
.+|+.|+||+|||++|..++..++.+++++........ +..+ .+..++... ..++.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~---e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~ 78 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDD---EMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGR 78 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChH---HHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCC
Confidence 48999999999999999999998877777765443221 2211 233333221 23467
Q ss_pred EEEecchhhhhhccCCCcchHHHHHHHHHHHhhhcc
Q 001746 826 IIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDG 861 (1018)
Q Consensus 826 IIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldg 861 (1018)
+|+||-+..|....-.....+..+..+..++..+..
T Consensus 79 ~VlID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~~ 114 (170)
T PRK05800 79 CVLVDCLTTWVTNLLFEEGEEAIAAEIDALLAALQQ 114 (170)
T ss_pred EEEehhHHHHHHHHhcccchHHHHHHHHHHHHHHHc
Confidence 899999999975432110002223344455555543
No 331
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.95 E-value=0.0018 Score=63.57 Aligned_cols=32 Identities=50% Similarity=0.825 Sum_probs=26.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 001746 767 ILLFGPPGTGKTLLAKALATEAGANFISITGSTL 800 (1018)
Q Consensus 767 VLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL 800 (1018)
|++.||||+|||++|+.++..++..+ ++...+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~--i~~D~~ 33 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVV--ISQDEI 33 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEE--EEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEE--EeHHHH
Confidence 78999999999999999999999444 444443
No 332
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.94 E-value=0.0021 Score=71.20 Aligned_cols=94 Identities=21% Similarity=0.251 Sum_probs=61.2
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEe-ccccc
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAG---ANFISIT-GSTLT 801 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg---~~fi~Is-~seL~ 801 (1018)
.+++++|-.....+.|++++.. +...++|.||+|+|||++++++..+.. ..++.+. ..++.
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~~---------------~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~ 121 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLEK---------------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQ 121 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHhc---------------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceec
Confidence 4677888777777777776532 123489999999999999999987763 3445442 22221
Q ss_pred hh------hhhhHHHHHHHHHHHHHhcCCeEEEecchhh
Q 001746 802 SK------WFGDAEKLTKALFSFASKLAPVIIFVDEVDS 834 (1018)
Q Consensus 802 s~------~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~ 834 (1018)
-. ...+.......+...+.+..|.+|+|+|+..
T Consensus 122 ~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~ 160 (264)
T cd01129 122 IPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIRD 160 (264)
T ss_pred CCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCCC
Confidence 10 0011112345556667788999999999954
No 333
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.94 E-value=0.025 Score=66.54 Aligned_cols=36 Identities=31% Similarity=0.423 Sum_probs=26.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccc
Q 001746 764 CKGILLFGPPGTGKTLLAKALATEA----GANFISITGST 799 (1018)
Q Consensus 764 ~~gVLL~GPPGTGKT~LArAIA~el----g~~fi~Is~se 799 (1018)
+..++|.||+|+|||+++..+|... |..+..+++..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt 262 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDN 262 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccc
Confidence 3568899999999999999999754 44454444433
No 334
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=96.92 E-value=0.0031 Score=76.13 Aligned_cols=169 Identities=21% Similarity=0.304 Sum_probs=95.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--CCcEEEEeccccchhhhhhH-HHHHHHHHHHHHhc---------CCeEEEecch
Q 001746 765 KGILLFGPPGTGKTLLAKALATEA--GANFISITGSTLTSKWFGDA-EKLTKALFSFASKL---------APVIIFVDEV 832 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~el--g~~fi~Is~seL~s~~~ge~-ek~I~~lF~~A~k~---------~PsIIfIDEI 832 (1018)
-+|||.|.|||||-.||++|-... ..||+.++|..+.....++. -..+...|.-|+.. ....+|+|||
T Consensus 337 ~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlFldeI 416 (606)
T COG3284 337 LPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLFLDEI 416 (606)
T ss_pred CCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCCccHHHHh
Confidence 459999999999999999998766 46899999987644322210 11122223322221 2369999999
Q ss_pred hhhhhccCCCcchHHHHHHHHHHHhhhc--------cccccCCCcEEEEEecCCCC-------CCcHHHHhccCcccccc
Q 001746 833 DSLLGARGGAFEHEATRRMRNEFMSAWD--------GLRSKESQKILILGATNRPF-------DLDDAVIRRLPRRIYVD 897 (1018)
Q Consensus 833 D~L~~~r~~~~~~e~~~~il~~LL~~Ld--------gl~~~~~~~VlVIaTTN~p~-------~LD~aLlrRFd~~I~V~ 897 (1018)
..|.- .+...||..|. +-. ....|-||+||+++- .+-+.|.-|+ ....+.
T Consensus 417 gd~p~------------~~Qs~LLrVl~e~~v~p~g~~~--~~vdirvi~ath~dl~~lv~~g~fredLyyrL-~~~~i~ 481 (606)
T COG3284 417 GDMPL------------ALQSRLLRVLQEGVVTPLGGTR--IKVDIRVIAATHRDLAQLVEQGRFREDLYYRL-NAFVIT 481 (606)
T ss_pred hhchH------------HHHHHHHHHHhhCceeccCCcc--eeEEEEEEeccCcCHHHHHHcCCchHHHHHHh-cCeeec
Confidence 88731 12223333322 221 334688999998741 1223333344 234566
Q ss_pred CCCHHHHHH---HHHHHHhccCCC-CcccHHHHHHHc-cCC--CHHHHHHHHHHHHHH
Q 001746 898 LPDAENRMK---ILRIFLAHESLE-SGFQFNELANAT-EGY--SGSDLKNLCIAAAYR 948 (1018)
Q Consensus 898 lPd~eeR~e---ILk~~L~~~~l~-~dvdl~~LA~~T-eGf--SgaDL~~L~~~Aa~~ 948 (1018)
+|...+|.. .|..++....-. -.++-..++... ..+ +-++|.+++..++..
T Consensus 482 lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l 539 (606)
T COG3284 482 LPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVIERLAAL 539 (606)
T ss_pred cCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHc
Confidence 677766544 555555443321 122222233322 222 558999998887654
No 335
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.90 E-value=0.011 Score=68.05 Aligned_cols=156 Identities=17% Similarity=0.113 Sum_probs=85.8
Q ss_pred ccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch--------
Q 001746 731 IGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS-------- 802 (1018)
Q Consensus 731 IgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~s-------- 802 (1018)
+.+.+.+...|..++-. ... +.|..|.|||..|||||++.+++.++++.+.+.+++-+.+.
T Consensus 8 v~~Re~qi~~L~~Llg~---------~~~--~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 8 VPCRESQIRRLKSLLGN---------NSC--TIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred ccchHHHHHHHHHHhCC---------CCc--ccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHH
Confidence 44567777777776522 111 34466899999999999999999999999988887654321
Q ss_pred --hh-----hh----hHHHHH---HHHHHH---HHhc-CCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccc
Q 001746 803 --KW-----FG----DAEKLT---KALFSF---ASKL-APVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRS 864 (1018)
Q Consensus 803 --~~-----~g----e~ek~I---~~lF~~---A~k~-~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~ 864 (1018)
+. .| ....++ ..+|.. +.+. +-..|++|++|.+-.. ...+++.++.+-.-+.
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~---------~a~ll~~l~~L~el~~- 146 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDM---------DAILLQCLFRLYELLN- 146 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhcc---------chHHHHHHHHHHHHhC-
Confidence 10 11 111111 122222 2222 3568999999999532 1233444443322221
Q ss_pred cCCCcEEEEEecCCCCCCcHHHH--hc-cCccccccCCCHHHHHHHHHHH
Q 001746 865 KESQKILILGATNRPFDLDDAVI--RR-LPRRIYVDLPDAENRMKILRIF 911 (1018)
Q Consensus 865 ~~~~~VlVIaTTN~p~~LD~aLl--rR-Fd~~I~V~lPd~eeR~eILk~~ 911 (1018)
.+ .+.+|...-.+... -.. .- -...++||.|+.++-.+|+..-
T Consensus 147 ~~--~i~iils~~~~e~~--y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 147 EP--TIVIILSAPSCEKQ--YLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred CC--ceEEEEeccccHHH--hhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 11 22222222111110 111 11 1246789999999988888653
No 336
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.90 E-value=0.0084 Score=64.16 Aligned_cols=96 Identities=23% Similarity=0.367 Sum_probs=60.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccccchh--------------------------h------
Q 001746 761 LRPCKGILLFGPPGTGKTLLAKALATEA----GANFISITGSTLTSK--------------------------W------ 804 (1018)
Q Consensus 761 ~~p~~gVLL~GPPGTGKT~LArAIA~el----g~~fi~Is~seL~s~--------------------------~------ 804 (1018)
+.+...+||.||||||||.|+..++.+. |-+.+.++..+-... .
T Consensus 16 ip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~~ 95 (226)
T PF06745_consen 16 IPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIGW 95 (226)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST-
T ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccccc
Confidence 5667789999999999999999876543 777777764321100 0
Q ss_pred -hhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhc
Q 001746 805 -FGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWD 860 (1018)
Q Consensus 805 -~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ld 860 (1018)
.......+..+........+.+++||.+..+. ... .....+..+..+...+.
T Consensus 96 ~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~-~~~---~~~~~r~~l~~l~~~l~ 148 (226)
T PF06745_consen 96 SPNDLEELLSKIREAIEELKPDRVVIDSLSALL-LYD---DPEELRRFLRALIKFLK 148 (226)
T ss_dssp TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHT-TSS---SGGGHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEECHHHHh-hcC---CHHHHHHHHHHHHHHHH
Confidence 01234455666666677788999999999982 221 23344555666666653
No 337
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.86 E-value=0.01 Score=75.02 Aligned_cols=42 Identities=7% Similarity=0.090 Sum_probs=34.4
Q ss_pred hhhcccccCCCcchHHHHhccccEEEEcCCChHHHHHHHHHHHH
Q 001746 562 RLTEGLKATKRSDDNEIYNLFTNVLSIHPPKEEDLLRTFNKQVE 605 (1018)
Q Consensus 562 ~LvIGmTnR~d~iD~aL~rrFe~~ieI~LPdeegRl~Il~iht~ 605 (1018)
.++|+++|-.. |+++|+.||+ .|.+..+.++.-++|.+.|+.
T Consensus 466 v~~i~TaN~~~-i~~aLl~R~~-ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 466 VMFVATSNSMN-IPAPLLDRME-VIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred eEEEEcCCCCC-CCHHHhccee-eeecCCCCHHHHHHHHHHhhh
Confidence 45666666664 9999999997 578888889999999999984
No 338
>COG1485 Predicted ATPase [General function prediction only]
Probab=96.86 E-value=0.0051 Score=70.10 Aligned_cols=103 Identities=17% Similarity=0.283 Sum_probs=57.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcE-EEEeccccchhhh-------hhH---HHHHHHHHHHHHhcCCeEEEe
Q 001746 761 LRPCKGILLFGPPGTGKTLLAKALATEAGANF-ISITGSTLTSKWF-------GDA---EKLTKALFSFASKLAPVIIFV 829 (1018)
Q Consensus 761 ~~p~~gVLL~GPPGTGKT~LArAIA~elg~~f-i~Is~seL~s~~~-------ge~---ek~I~~lF~~A~k~~PsIIfI 829 (1018)
..+++|+.|||+-|.|||+|.-...+.+-.+- ..+.-..++.... |+. ......++. .-.||+|
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~dpl~~iA~~~~~-----~~~vLCf 136 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTDPLPPIADELAA-----ETRVLCF 136 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCCCccHHHHHHHHh-----cCCEEEe
Confidence 34789999999999999999999988774322 1111112211111 111 111111111 2369999
Q ss_pred cchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCC-CCCc
Q 001746 830 DEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP-FDLD 883 (1018)
Q Consensus 830 DEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p-~~LD 883 (1018)
||+..= .-....++..|+..|- .+.|.+++|+|.+ +.|-
T Consensus 137 DEF~Vt---------DI~DAMiL~rL~~~Lf------~~GV~lvaTSN~~P~~LY 176 (367)
T COG1485 137 DEFEVT---------DIADAMILGRLLEALF------ARGVVLVATSNTAPDNLY 176 (367)
T ss_pred eeeeec---------ChHHHHHHHHHHHHHH------HCCcEEEEeCCCChHHhc
Confidence 998641 1112234455554441 2468999999864 4433
No 339
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.86 E-value=0.0076 Score=64.20 Aligned_cols=39 Identities=33% Similarity=0.441 Sum_probs=30.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---C------CcEEEEeccc
Q 001746 761 LRPCKGILLFGPPGTGKTLLAKALATEA---G------ANFISITGST 799 (1018)
Q Consensus 761 ~~p~~gVLL~GPPGTGKT~LArAIA~el---g------~~fi~Is~se 799 (1018)
+.+..-+.|+||||+|||+|+..+|... + ..+++++...
T Consensus 16 ~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 16 IPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 5566679999999999999999998764 3 5667777654
No 340
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.85 E-value=0.04 Score=65.17 Aligned_cols=201 Identities=15% Similarity=0.137 Sum_probs=99.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchh---------------hh-----hhHHHHHHHHHHHH
Q 001746 763 PCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSK---------------WF-----GDAEKLTKALFSFA 819 (1018)
Q Consensus 763 p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~s~---------------~~-----ge~ek~I~~lF~~A 819 (1018)
++.-|+|.|++|+|||+++..+|..+ |..+.-+++...-.. ++ ..........+..+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 45679999999999999999999877 666666665432100 00 01122333445555
Q ss_pred HhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHhccCcc-----c
Q 001746 820 SKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRR-----I 894 (1018)
Q Consensus 820 ~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~-----I 894 (1018)
+...-.+||||=..++- .....+.++....+... +...++|+-++.-.+.+ ...+.|... +
T Consensus 179 ~~~~~DvViIDTaGr~~----------~d~~lm~El~~i~~~~~--p~e~lLVlda~~Gq~a~--~~a~~F~~~~~~~g~ 244 (429)
T TIGR01425 179 KKENFDIIIVDTSGRHK----------QEDSLFEEMLQVAEAIQ--PDNIIFVMDGSIGQAAE--AQAKAFKDSVDVGSV 244 (429)
T ss_pred HhCCCCEEEEECCCCCc----------chHHHHHHHHHHhhhcC--CcEEEEEeccccChhHH--HHHHHHHhccCCcEE
Confidence 55456788888765431 11223344443333321 22345555544322222 222344221 2
Q ss_pred cccCCCHHHHHH-HHHHH-Hhc---------cCCC--CcccHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 001746 895 YVDLPDAENRMK-ILRIF-LAH---------ESLE--SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKRG 961 (1018)
Q Consensus 895 ~V~lPd~eeR~e-ILk~~-L~~---------~~l~--~dvdl~~LA~~TeGfSgaDL~~L~~~Aa~~Airr~~~~~~~~~ 961 (1018)
.+...|...|.- +|... ..+ +.+. ..++...++.+.-| -+|+..|++.|.. ++.+...++....
T Consensus 245 IlTKlD~~argG~aLs~~~~t~~PI~fig~Ge~v~Dle~f~p~~~~~rilg--mgDi~~L~ek~~~-~~~~~~~~~~~~k 321 (429)
T TIGR01425 245 IITKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEIFKTQPFISKLLG--MGDIEGLIDKVQD-LKLDDNEKALIEK 321 (429)
T ss_pred EEECccCCCCccHHhhhHHHHCCCeEEEcCCCChhhcCcCChHHHHHHHhc--CCCcHHHHHHHHH-hhhHHHHHHHHHH
Confidence 233445444431 22211 111 1111 23445566666644 3688888877653 2222100000000
Q ss_pred CCCCCCCccCCCHHHHHHHHHhhC
Q 001746 962 KNDAAPVLRPLKLEDFIQSKAKVG 985 (1018)
Q Consensus 962 ~~~~~~~~rpLT~eDF~~Al~kv~ 985 (1018)
.. ....|++||...++.++
T Consensus 322 ~~-----~~~f~l~D~~~q~~~i~ 340 (429)
T TIGR01425 322 LK-----EGTFTLRDMYEQFQNLL 340 (429)
T ss_pred HH-----hCCCCHHHHHHHHHHHH
Confidence 00 02479999998887765
No 341
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.84 E-value=0.0034 Score=66.38 Aligned_cols=34 Identities=44% Similarity=0.620 Sum_probs=25.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 001746 765 KGILLFGPPGTGKTLLAKALATEA---GANFISITGS 798 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~s 798 (1018)
+-++|.||||||||+++++++..+ |..++.+.+.
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT 55 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPT 55 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESS
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 458899999999999999987655 6677766654
No 342
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.84 E-value=0.0013 Score=79.24 Aligned_cols=64 Identities=19% Similarity=0.277 Sum_probs=47.5
Q ss_pred cccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEec
Q 001746 726 VRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA-GANFISITG 797 (1018)
Q Consensus 726 vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~el-g~~fi~Is~ 797 (1018)
.-|+|+.|++++++.+.+++...... +....+.++|.||||+|||+||++||+.+ ..+++.+..
T Consensus 73 ~fF~d~yGlee~ieriv~~l~~Aa~g--------l~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 73 PAFEEFYGMEEAIEQIVSYFRHAAQG--------LEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred cchhcccCcHHHHHHHHHHHHHHHHh--------cCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 45889999999999998877332111 12233568999999999999999999987 345655543
No 343
>PRK10536 hypothetical protein; Provisional
Probab=96.83 E-value=0.0061 Score=67.33 Aligned_cols=22 Identities=41% Similarity=0.496 Sum_probs=20.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 001746 766 GILLFGPPGTGKTLLAKALATE 787 (1018)
Q Consensus 766 gVLL~GPPGTGKT~LArAIA~e 787 (1018)
-+++.||+|||||+||.|+|.+
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999985
No 344
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=96.83 E-value=0.003 Score=74.10 Aligned_cols=174 Identities=25% Similarity=0.296 Sum_probs=97.6
Q ss_pred cccChHHHHHHHHHHHHccc-CCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhhhhH
Q 001746 730 DIGALEDVKKALNELVILPM-RRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDA 808 (1018)
Q Consensus 730 DIgGle~vk~~L~e~V~~pL-~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~s~~~ge~ 808 (1018)
+|.|.+++|+.|.-++.--. +.+ ..+-.++...+|+|.|.||+.|+-|.++|.+-.-.-.+...-.+ .-+|-+
T Consensus 343 EIyGheDVKKaLLLlLVGgvd~~~---~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGS---SGVGLT 416 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVGGVDKSP---GDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGS---SGVGLT 416 (721)
T ss_pred hhccchHHHHHHHHHhhCCCCCCC---CCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCC---Cccccc
Confidence 57889999998876654322 121 13333566778999999999999999999886643333221100 001111
Q ss_pred HHHHHHHHHH-------H-HhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCC
Q 001746 809 EKLTKALFSF-------A-SKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPF 880 (1018)
Q Consensus 809 ek~I~~lF~~-------A-~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~ 880 (1018)
...++.-... | --....|.+|||+|.+....... -++++.+ +++-..--|+.+.-+.+.-|+|++|..+
T Consensus 417 AAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRtA-IHEVMEQ--QTISIaKAGI~TtLNAR~sILaAANPay 493 (721)
T KOG0482|consen 417 AAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDRTA-IHEVMEQ--QTISIAKAGINTTLNARTSILAAANPAY 493 (721)
T ss_pred hhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhhHH-HHHHHHh--hhhhhhhhccccchhhhHHhhhhcCccc
Confidence 1111100000 0 00124789999999986432111 1222211 1111112244444455777899988543
Q ss_pred -------------CCcHHHHhccCcccc-ccCCCHHHHHHHHHHHH
Q 001746 881 -------------DLDDAVIRRLPRRIY-VDLPDAENRMKILRIFL 912 (1018)
Q Consensus 881 -------------~LD~aLlrRFd~~I~-V~lPd~eeR~eILk~~L 912 (1018)
.|+.+|++||+.... ...|+.+.-..+.+++.
T Consensus 494 GRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiT 539 (721)
T KOG0482|consen 494 GRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHIT 539 (721)
T ss_pred cccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhH
Confidence 288999999986544 45688877777666554
No 345
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.82 E-value=0.0043 Score=80.20 Aligned_cols=133 Identities=20% Similarity=0.225 Sum_probs=86.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc--chhhhhh-----------HHHHHHHHHHHHHhcCCeEEEecc
Q 001746 765 KGILLFGPPGTGKTLLAKALATEAGANFISITGSTL--TSKWFGD-----------AEKLTKALFSFASKLAPVIIFVDE 831 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL--~s~~~ge-----------~ek~I~~lF~~A~k~~PsIIfIDE 831 (1018)
-++||.||..+|||++...+|.+.|-.|+.++-.+. ...|.|. .+..+...... .--|++||
T Consensus 889 fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~-----GyWIVLDE 963 (4600)
T COG5271 889 FPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRR-----GYWIVLDE 963 (4600)
T ss_pred CcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhc-----CcEEEeec
Confidence 359999999999999999999999999999986543 2223331 23333333332 24588999
Q ss_pred hhhhhhccCCCcchHHHHHHHHHHHhhhcccccc-------CCCcEEEEEecCCCCC------CcHHHHhccCccccccC
Q 001746 832 VDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSK-------ESQKILILGATNRPFD------LDDAVIRRLPRRIYVDL 898 (1018)
Q Consensus 832 ID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~-------~~~~VlVIaTTN~p~~------LD~aLlrRFd~~I~V~l 898 (1018)
+..-. ...-..+|.|+.--+.+.-+ +....++.||-|.|.. |..|++.|| ..++|.-
T Consensus 964 LNLAp---------TDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRF-lE~hFdd 1033 (4600)
T COG5271 964 LNLAP---------TDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRF-LEMHFDD 1033 (4600)
T ss_pred cccCc---------HHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhh-Hhhhccc
Confidence 86421 11222333443322223222 3446777888888854 788999999 6777877
Q ss_pred CCHHHHHHHHHHHH
Q 001746 899 PDAENRMKILRIFL 912 (1018)
Q Consensus 899 Pd~eeR~eILk~~L 912 (1018)
-..++...||+..+
T Consensus 1034 ipedEle~ILh~rc 1047 (4600)
T COG5271 1034 IPEDELEEILHGRC 1047 (4600)
T ss_pred CcHHHHHHHHhccC
Confidence 66788888887544
No 346
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.82 E-value=0.0083 Score=64.26 Aligned_cols=114 Identities=18% Similarity=0.213 Sum_probs=62.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccccch-hhh-------------------------
Q 001746 761 LRPCKGILLFGPPGTGKTLLAKALATEA---------GANFISITGSTLTS-KWF------------------------- 805 (1018)
Q Consensus 761 ~~p~~gVLL~GPPGTGKT~LArAIA~el---------g~~fi~Is~seL~s-~~~------------------------- 805 (1018)
+.+..-+.|+||||+|||+|+..+|... +...++++...-.. ...
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 16 IETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecCC
Confidence 5556678999999999999999998553 25677777654211 000
Q ss_pred -hhHHHHHHHHHHHHHhc-CCeEEEecchhhhhhcc-CCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEec
Q 001746 806 -GDAEKLTKALFSFASKL-APVIIFVDEVDSLLGAR-GGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGAT 876 (1018)
Q Consensus 806 -ge~ek~I~~lF~~A~k~-~PsIIfIDEID~L~~~r-~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTT 876 (1018)
.+....+..+-...... .+.+|+||-+..+.... ..........+.+..++..|..+... ..+.||.|.
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~--~~~avl~tn 167 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADE--FNVAVVITN 167 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHH--hCCEEEEec
Confidence 01112222333333445 78999999999875321 11111122223445555555544322 245555554
No 347
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.79 E-value=0.012 Score=64.88 Aligned_cols=37 Identities=24% Similarity=0.353 Sum_probs=29.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001746 761 LRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITG 797 (1018)
Q Consensus 761 ~~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~ 797 (1018)
+.+...+|++||||||||+||..+|.+. |-+.++++.
T Consensus 33 ip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 33 IPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred eECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 5667779999999999999999987653 556666554
No 348
>PRK09354 recA recombinase A; Provisional
Probab=96.77 E-value=0.008 Score=69.11 Aligned_cols=77 Identities=25% Similarity=0.247 Sum_probs=51.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchh----------------hhhhHHHHHHHHHHHHHh
Q 001746 761 LRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSK----------------WFGDAEKLTKALFSFASK 821 (1018)
Q Consensus 761 ~~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~s~----------------~~ge~ek~I~~lF~~A~k 821 (1018)
+...+-++|+||||||||+||-.++.+. |...++++...-... .....+..+..+-...+.
T Consensus 57 ip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s 136 (349)
T PRK09354 57 LPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRS 136 (349)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhc
Confidence 5556678999999999999999876544 667777765442110 011233333333344556
Q ss_pred cCCeEEEecchhhhhh
Q 001746 822 LAPVIIFVDEVDSLLG 837 (1018)
Q Consensus 822 ~~PsIIfIDEID~L~~ 837 (1018)
..+.+|+||-+-.|.+
T Consensus 137 ~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 137 GAVDLIVVDSVAALVP 152 (349)
T ss_pred CCCCEEEEeChhhhcc
Confidence 6789999999999875
No 349
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.76 E-value=0.011 Score=70.40 Aligned_cols=77 Identities=21% Similarity=0.296 Sum_probs=53.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhh------hh--------HHHHHHHHHHHHHhcC
Q 001746 761 LRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWF------GD--------AEKLTKALFSFASKLA 823 (1018)
Q Consensus 761 ~~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~------ge--------~ek~I~~lF~~A~k~~ 823 (1018)
+.+..-+||+|+||+|||+|+..+|... +.++++++..+-..... +- .+..+..+...+.+..
T Consensus 91 i~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~~ 170 (454)
T TIGR00416 91 IVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEEN 170 (454)
T ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhcC
Confidence 5666779999999999999999998765 45777777654322110 00 0122445555566778
Q ss_pred CeEEEecchhhhhh
Q 001746 824 PVIIFVDEVDSLLG 837 (1018)
Q Consensus 824 PsIIfIDEID~L~~ 837 (1018)
|.+|+||.|..+..
T Consensus 171 ~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 171 PQACVIDSIQTLYS 184 (454)
T ss_pred CcEEEEecchhhcc
Confidence 99999999999864
No 350
>PRK13947 shikimate kinase; Provisional
Probab=96.75 E-value=0.0013 Score=66.92 Aligned_cols=31 Identities=42% Similarity=0.553 Sum_probs=28.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001746 766 GILLFGPPGTGKTLLAKALATEAGANFISIT 796 (1018)
Q Consensus 766 gVLL~GPPGTGKT~LArAIA~elg~~fi~Is 796 (1018)
+|+|.|+||||||++|+.+|+.+|.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5999999999999999999999999997654
No 351
>PRK03839 putative kinase; Provisional
Probab=96.73 E-value=0.0013 Score=67.91 Aligned_cols=31 Identities=39% Similarity=0.659 Sum_probs=28.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001746 766 GILLFGPPGTGKTLLAKALATEAGANFISIT 796 (1018)
Q Consensus 766 gVLL~GPPGTGKT~LArAIA~elg~~fi~Is 796 (1018)
.|+|.|+||+|||++++.+|+.++++|+.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 3899999999999999999999999997754
No 352
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.73 E-value=0.00085 Score=69.49 Aligned_cols=23 Identities=48% Similarity=0.775 Sum_probs=20.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001746 766 GILLFGPPGTGKTLLAKALATEA 788 (1018)
Q Consensus 766 gVLL~GPPGTGKT~LArAIA~el 788 (1018)
+|+|+|+||+|||++++.++.++
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 48999999999999999999988
No 353
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.73 E-value=0.011 Score=61.36 Aligned_cols=71 Identities=17% Similarity=0.157 Sum_probs=47.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhh-----------------hhHHHHHHHHHHHHHhcCCeEEEe
Q 001746 767 ILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWF-----------------GDAEKLTKALFSFASKLAPVIIFV 829 (1018)
Q Consensus 767 VLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~s~~~-----------------ge~ek~I~~lF~~A~k~~PsIIfI 829 (1018)
+|+.|++|+|||++|..++...+.+.+++....-...-. .+....+...+... ..+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~--~~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKEL--DPGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc--CCCCEEEE
Confidence 689999999999999999988887888776554322111 01222333333221 14679999
Q ss_pred cchhhhhhcc
Q 001746 830 DEVDSLLGAR 839 (1018)
Q Consensus 830 DEID~L~~~r 839 (1018)
|-+..|....
T Consensus 80 Dclt~~~~n~ 89 (169)
T cd00544 80 DCLTLWVTNL 89 (169)
T ss_pred EcHhHHHHHh
Confidence 9999997654
No 354
>PRK10867 signal recognition particle protein; Provisional
Probab=96.70 E-value=0.074 Score=63.08 Aligned_cols=73 Identities=23% Similarity=0.250 Sum_probs=47.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccccchhh--------------------hhhHHHHHHHHHHH
Q 001746 763 PCKGILLFGPPGTGKTLLAKALATEA----GANFISITGSTLTSKW--------------------FGDAEKLTKALFSF 818 (1018)
Q Consensus 763 p~~gVLL~GPPGTGKT~LArAIA~el----g~~fi~Is~seL~s~~--------------------~ge~ek~I~~lF~~ 818 (1018)
++.-|++.||+|+|||+++..+|..+ |..+..+++....... ..............
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~ 178 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEE 178 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHH
Confidence 45779999999999999888888755 5566666654331110 01233444455556
Q ss_pred HHhcCCeEEEecchhhh
Q 001746 819 ASKLAPVIIFVDEVDSL 835 (1018)
Q Consensus 819 A~k~~PsIIfIDEID~L 835 (1018)
++.....+|+||=..++
T Consensus 179 a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 179 AKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHhcCCCEEEEeCCCCc
Confidence 66666789999977654
No 355
>PRK04296 thymidine kinase; Provisional
Probab=96.69 E-value=0.01 Score=62.38 Aligned_cols=69 Identities=16% Similarity=0.205 Sum_probs=40.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc----c----cchhhhhh-H----HHHHHHHHHHH--HhcCCeEE
Q 001746 766 GILLFGPPGTGKTLLAKALATEA---GANFISITGS----T----LTSKWFGD-A----EKLTKALFSFA--SKLAPVII 827 (1018)
Q Consensus 766 gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~s----e----L~s~~~ge-~----ek~I~~lF~~A--~k~~PsII 827 (1018)
-+|++||||+|||+++..++..+ +..++.+.+. . +... .|- . ......++..+ ....+.+|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~-lg~~~~~~~~~~~~~~~~~~~~~~~~~dvv 82 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSR-IGLSREAIPVSSDTDIFELIEEEGEKIDCV 82 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecC-CCCcccceEeCChHHHHHHHHhhCCCCCEE
Confidence 47899999999999999888776 5555555331 1 1111 110 0 01122333332 23467899
Q ss_pred Eecchhhh
Q 001746 828 FVDEVDSL 835 (1018)
Q Consensus 828 fIDEID~L 835 (1018)
+|||++.+
T Consensus 83 iIDEaq~l 90 (190)
T PRK04296 83 LIDEAQFL 90 (190)
T ss_pred EEEccccC
Confidence 99999654
No 356
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.69 E-value=0.005 Score=58.14 Aligned_cols=23 Identities=43% Similarity=0.543 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001746 766 GILLFGPPGTGKTLLAKALATEA 788 (1018)
Q Consensus 766 gVLL~GPPGTGKT~LArAIA~el 788 (1018)
+++|+||+|+|||+++.+++.++
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHH
Confidence 58999999999999998888776
No 357
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.68 E-value=0.026 Score=66.38 Aligned_cols=75 Identities=15% Similarity=0.306 Sum_probs=51.5
Q ss_pred CCeEEEEcCchhhhhhccCcchHHHHHHHHHHHHhcCCCCEEEEeeccCCCCCccccccccccccccccccCCCCchhhh
Q 001746 484 QPLIVYFPDSSLWLSRAVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPNFGRLAKLPLPLQRL 563 (1018)
Q Consensus 484 ~p~Iiff~did~~~~~s~~~~~~~~~~s~~~~~l~~l~g~v~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 563 (1018)
+..|||+||||.+-.. .+. .|...|+ .|.+++|++++...
T Consensus 92 ~~~vL~IDEi~~l~~~-----~q~----~LL~~le--~~~iilI~att~n~----------------------------- 131 (413)
T PRK13342 92 RRTILFIDEIHRFNKA-----QQD----ALLPHVE--DGTITLIGATTENP----------------------------- 131 (413)
T ss_pred CceEEEEechhhhCHH-----HHH----HHHHHhh--cCcEEEEEeCCCCh-----------------------------
Confidence 5679999999986432 222 2334444 37888886654311
Q ss_pred hcccccCCCcchHHHHhccccEEEEcCCChHHHHHHHHHHHHH
Q 001746 564 TEGLKATKRSDDNEIYNLFTNVLSIHPPKEEDLLRTFNKQVEE 606 (1018)
Q Consensus 564 vIGmTnR~d~iD~aL~rrFe~~ieI~LPdeegRl~Il~iht~~ 606 (1018)
...++++|+.|+ ..+.|++|+++...++++..+.+
T Consensus 132 -------~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 132 -------SFEVNPALLSRA-QVFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred -------hhhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHH
Confidence 134778999999 78999999999888888776543
No 358
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.0048 Score=72.11 Aligned_cols=75 Identities=19% Similarity=0.294 Sum_probs=59.3
Q ss_pred ccccccccccc---------cchhhHHHHHHhhhhcccCccchhhcccccCCCCCceeeccCCchhHHHHHHHHHHHHhh
Q 001746 177 INISWDTFPYY---------INENTKSLLVECVGSHLKHKKFTATFGARLTSSSGRILLRSVPGTELYRERLIRALAREL 247 (1018)
Q Consensus 177 ~~vsf~~fpyy---------lse~tk~~L~~~~~~hl~~~~~~~~~~~~l~~~~~riLL~~~~gsE~yqe~L~kALA~~~ 247 (1018)
-.-.|..||+= +.+..|.-+++=..-.++.+++ |.+.=-+=-+.-||+|||| ..+-.++=|+|+|+
T Consensus 185 ~~~~W~~v~f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~---YkrvGkawKRGYLLYGPPG--TGKSS~IaAmAn~L 259 (457)
T KOG0743|consen 185 KGGEWRSVGFPHPSTFETLAMDPDLKERIIDDLDDFIKGKDF---YKRVGKAWKRGYLLYGPPG--TGKSSFIAAMANYL 259 (457)
T ss_pred cCCcceecCCCCCCCccccccChhHHHHHHHHHHHHHhcchH---HHhcCcchhccceeeCCCC--CCHHHHHHHHHhhc
Confidence 35567777663 5788899999999999999998 5454455677899999999 89999999999998
Q ss_pred CCcEEeeec
Q 001746 248 QVPLLVLDS 256 (1018)
Q Consensus 248 ~a~ll~~ds 256 (1018)
+-..-.|.-
T Consensus 260 ~ydIydLeL 268 (457)
T KOG0743|consen 260 NYDIYDLEL 268 (457)
T ss_pred CCceEEeee
Confidence 765544443
No 359
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.68 E-value=0.0016 Score=64.78 Aligned_cols=31 Identities=35% Similarity=0.626 Sum_probs=28.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001746 766 GILLFGPPGTGKTLLAKALATEAGANFISIT 796 (1018)
Q Consensus 766 gVLL~GPPGTGKT~LArAIA~elg~~fi~Is 796 (1018)
+|+|+|+||+|||++|+.+|..++++++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4899999999999999999999999988654
No 360
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.67 E-value=0.013 Score=64.25 Aligned_cols=37 Identities=30% Similarity=0.356 Sum_probs=29.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEec
Q 001746 761 LRPCKGILLFGPPGTGKTLLAKALATEA----GANFISITG 797 (1018)
Q Consensus 761 ~~p~~gVLL~GPPGTGKT~LArAIA~el----g~~fi~Is~ 797 (1018)
+.+..-++|.||||+|||+++..+|..+ |.+++.++.
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 4555679999999999999999887664 666766665
No 361
>PRK13948 shikimate kinase; Provisional
Probab=96.66 E-value=0.003 Score=66.30 Aligned_cols=36 Identities=31% Similarity=0.360 Sum_probs=32.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001746 761 LRPCKGILLFGPPGTGKTLLAKALATEAGANFISIT 796 (1018)
Q Consensus 761 ~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is 796 (1018)
..++..|+|.|++|+|||++++.+|+.++.+|+..+
T Consensus 7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 7 ERPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 456688999999999999999999999999998554
No 362
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.66 E-value=0.013 Score=67.80 Aligned_cols=111 Identities=14% Similarity=0.221 Sum_probs=70.1
Q ss_pred HHHHHHHHHhh-CCCeEEEEcCchhhhhhccCcchHHHHHHHHHHHHhcCCC-CEEEEeeccCCCCCccccccccccccc
Q 001746 472 AMEALCEVLHS-TQPLIVYFPDSSLWLSRAVPRCNRKEFVRKVEEMFDQLSG-PVVLICGQNKNETGPKEKEKFTMILPN 549 (1018)
Q Consensus 472 ~i~~L~e~~~~-~~p~Iiff~did~~~~~s~~~~~~~~~~s~~~~~l~~l~g-~v~vi~~~~~~~~~~~~~~~~~~~~~~ 549 (1018)
+++.+.+.+.+ .+|.||+|||+|.+..+. . .+.+..|...++.+++ ++.||+.+|..+
T Consensus 125 ~~~~~~~~l~~~~~~~viviDE~d~l~~~~----~-~~~l~~l~~~~~~~~~~~v~vI~i~~~~~--------------- 184 (394)
T PRK00411 125 LFDKIAEYLDERDRVLIVALDDINYLFEKE----G-NDVLYSLLRAHEEYPGARIGVIGISSDLT--------------- 184 (394)
T ss_pred HHHHHHHHHHhcCCEEEEEECCHhHhhccC----C-chHHHHHHHhhhccCCCeEEEEEEECCcc---------------
Confidence 55666666665 578999999999987221 1 1333344455666666 666665555433
Q ss_pred cccccCCCCchhhhhcccccCCCcchHHHHhcc-ccEEEEcCCChHHHHHHHHHHHHHHh-hhhhhhhhHHHHHH
Q 001746 550 FGRLAKLPLPLQRLTEGLKATKRSDDNEIYNLF-TNVLSIHPPKEEDLLRTFNKQVEEDR-RIVIYRSNLNELHK 622 (1018)
Q Consensus 550 ~~~~~~~~~~~~~LvIGmTnR~d~iD~aL~rrF-e~~ieI~LPdeegRl~Il~iht~~~~-~~~~~~~~v~~l~~ 622 (1018)
-.+.+++.+..|| ...++|++++.+...+||+.+++.-- .....++.++.++.
T Consensus 185 --------------------~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~ 239 (394)
T PRK00411 185 --------------------FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIAD 239 (394)
T ss_pred --------------------hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHH
Confidence 0133667777666 46789999999999999998864321 12234444566655
No 363
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.66 E-value=0.0041 Score=72.31 Aligned_cols=73 Identities=22% Similarity=0.364 Sum_probs=44.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC-----c-EEEEeccc---------------cchhhhhhHHHHHH---HHHHHHH
Q 001746 765 KGILLFGPPGTGKTLLAKALATEAGA-----N-FISITGST---------------LTSKWFGDAEKLTK---ALFSFAS 820 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~elg~-----~-fi~Is~se---------------L~s~~~ge~ek~I~---~lF~~A~ 820 (1018)
...||+||||+|||+|++.|++.... . ++.+.... +.+.+-......++ .++..|+
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae 249 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAK 249 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 34899999999999999999987733 2 22222211 12222222333332 3444443
Q ss_pred h----cCCeEEEecchhhhhh
Q 001746 821 K----LAPVIIFVDEVDSLLG 837 (1018)
Q Consensus 821 k----~~PsIIfIDEID~L~~ 837 (1018)
. ....+||||||.++..
T Consensus 250 ~~~e~G~dVlL~iDsItR~ar 270 (416)
T PRK09376 250 RLVEHGKDVVILLDSITRLAR 270 (416)
T ss_pred HHHHcCCCEEEEEEChHHHHH
Confidence 3 3567999999999974
No 364
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.0086 Score=75.59 Aligned_cols=139 Identities=26% Similarity=0.327 Sum_probs=96.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEeccccc--hhhhhhHHHHHHHHHHHHHh-cCCeEEEecc
Q 001746 765 KGILLFGPPGTGKTLLAKALATEA----------GANFISITGSTLT--SKWFGDAEKLTKALFSFASK-LAPVIIFVDE 831 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~el----------g~~fi~Is~seL~--s~~~ge~ek~I~~lF~~A~k-~~PsIIfIDE 831 (1018)
++-+|.|.||+|||.++.-+|+.. +..++.++...+. .++-|+.+..++.+..++.. ....||||||
T Consensus 209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfige 288 (898)
T KOG1051|consen 209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGE 288 (898)
T ss_pred CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecc
Confidence 567899999999999999999876 2456677766543 34667889999999998874 4567999999
Q ss_pred hhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCC-----CCCcHHHHhccCccccccCCCHHHHHH
Q 001746 832 VDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP-----FDLDDAVIRRLPRRIYVDLPDAENRMK 906 (1018)
Q Consensus 832 ID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p-----~~LD~aLlrRFd~~I~V~lPd~eeR~e 906 (1018)
++.+.+...+.. .....+-|--.+ ....+.+||||..- -.=+|++-+||+ .+.|+.|+.+.-..
T Consensus 289 lh~lvg~g~~~~----~~d~~nlLkp~L------~rg~l~~IGatT~e~Y~k~iekdPalErrw~-l~~v~~pS~~~~~~ 357 (898)
T KOG1051|consen 289 LHWLVGSGSNYG----AIDAANLLKPLL------ARGGLWCIGATTLETYRKCIEKDPALERRWQ-LVLVPIPSVENLSL 357 (898)
T ss_pred eeeeecCCCcch----HHHHHHhhHHHH------hcCCeEEEecccHHHHHHHHhhCcchhhCcc-eeEeccCcccchhh
Confidence 999987654311 111222222222 12238899887522 236789999994 56789999888777
Q ss_pred HHHHHHhc
Q 001746 907 ILRIFLAH 914 (1018)
Q Consensus 907 ILk~~L~~ 914 (1018)
||...-..
T Consensus 358 iL~~l~~~ 365 (898)
T KOG1051|consen 358 ILPGLSER 365 (898)
T ss_pred hhhhhhhh
Confidence 77766544
No 365
>PRK14974 cell division protein FtsY; Provisional
Probab=96.66 E-value=0.015 Score=66.71 Aligned_cols=35 Identities=31% Similarity=0.335 Sum_probs=27.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 001746 764 CKGILLFGPPGTGKTLLAKALATEA---GANFISITGS 798 (1018)
Q Consensus 764 ~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~s 798 (1018)
+.-++|.||||+|||+++..+|..+ |..+..+++.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~D 177 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGD 177 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 5679999999999999999998776 5555555544
No 366
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.65 E-value=0.0029 Score=66.88 Aligned_cols=66 Identities=21% Similarity=0.322 Sum_probs=42.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCC----cEEEEec-cccchh---------hhhhHHHHHHHHHHHHHhcCCeEEEecch
Q 001746 767 ILLFGPPGTGKTLLAKALATEAGA----NFISITG-STLTSK---------WFGDAEKLTKALFSFASKLAPVIIFVDEV 832 (1018)
Q Consensus 767 VLL~GPPGTGKT~LArAIA~elg~----~fi~Is~-seL~s~---------~~ge~ek~I~~lF~~A~k~~PsIIfIDEI 832 (1018)
++|.||+|+|||+++++++.++.. .++.+.. .++... ..+.........+..+.+..|.+|++||+
T Consensus 4 ilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gEi 83 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGEM 83 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcCC
Confidence 899999999999999999988742 2333221 121110 01111223444555666778999999998
No 367
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.64 E-value=0.023 Score=68.13 Aligned_cols=90 Identities=12% Similarity=0.163 Sum_probs=59.3
Q ss_pred CCeEEEEcCchhhhhhccCcchHHHHHHHHHHHHhcCCCCEEEEeeccCCCCCccccccccccccccccccCCCCchhhh
Q 001746 484 QPLIVYFPDSSLWLSRAVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPNFGRLAKLPLPLQRL 563 (1018)
Q Consensus 484 ~p~Iiff~did~~~~~s~~~~~~~~~~s~~~~~l~~l~g~v~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 563 (1018)
..-|||+||++.+-.. ....|+..|+..++.+++|++++.
T Consensus 117 ~~kVvIIDE~h~Lt~~---------a~~~LLk~LE~p~~~vv~Ilattn------------------------------- 156 (472)
T PRK14962 117 KYKVYIIDEVHMLTKE---------AFNALLKTLEEPPSHVVFVLATTN------------------------------- 156 (472)
T ss_pred CeEEEEEEChHHhHHH---------HHHHHHHHHHhCCCcEEEEEEeCC-------------------------------
Confidence 3469999999987422 224456667777888888866553
Q ss_pred hcccccCCCcchHHHHhccccEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001746 564 TEGLKATKRSDDNEIYNLFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHK 622 (1018)
Q Consensus 564 vIGmTnR~d~iD~aL~rrFe~~ieI~LPdeegRl~Il~iht~~~~~~~~~~~~v~~l~~ 622 (1018)
+..+.++|..|+. .++|.+|+.+....+++.-.++ ......++-++.++.
T Consensus 157 -------~~kl~~~L~SR~~-vv~f~~l~~~el~~~L~~i~~~-egi~i~~eal~~Ia~ 206 (472)
T PRK14962 157 -------LEKVPPTIISRCQ-VIEFRNISDELIIKRLQEVAEA-EGIEIDREALSFIAK 206 (472)
T ss_pred -------hHhhhHHHhcCcE-EEEECCccHHHHHHHHHHHHHH-cCCCCCHHHHHHHHH
Confidence 2346788888985 7999999998877777655332 222334444555544
No 368
>PRK13695 putative NTPase; Provisional
Probab=96.62 E-value=0.008 Score=61.87 Aligned_cols=23 Identities=43% Similarity=0.598 Sum_probs=20.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001746 766 GILLFGPPGTGKTLLAKALATEA 788 (1018)
Q Consensus 766 gVLL~GPPGTGKT~LArAIA~el 788 (1018)
.++|.|++|+|||+|++.++.++
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999998775
No 369
>PRK00625 shikimate kinase; Provisional
Probab=96.61 E-value=0.0019 Score=67.24 Aligned_cols=31 Identities=39% Similarity=0.484 Sum_probs=28.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001746 766 GILLFGPPGTGKTLLAKALATEAGANFISIT 796 (1018)
Q Consensus 766 gVLL~GPPGTGKT~LArAIA~elg~~fi~Is 796 (1018)
.|+|.|.||+|||++++.+|+.++++|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5999999999999999999999999998765
No 370
>PRK04328 hypothetical protein; Provisional
Probab=96.61 E-value=0.022 Score=62.54 Aligned_cols=37 Identities=24% Similarity=0.406 Sum_probs=27.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001746 761 LRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITG 797 (1018)
Q Consensus 761 ~~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~ 797 (1018)
+.+...+||+||||||||.|+..++.+. |-+.++++.
T Consensus 20 ip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 20 IPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 5566779999999999999999876542 555555543
No 371
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.61 E-value=0.012 Score=58.35 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=35.6
Q ss_pred cccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 001746 730 DIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA 788 (1018)
Q Consensus 730 DIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~el 788 (1018)
.|.|+.-+.+.+...+...+..+. -..|--+-|+|++|||||++++.||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~-------p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPN-------PRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCC-------CCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 355677666666666655443321 1223345599999999999999999986
No 372
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.56 E-value=0.0099 Score=65.47 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=23.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC
Q 001746 764 CKGILLFGPPGTGKTLLAKALATEAGA 790 (1018)
Q Consensus 764 ~~gVLL~GPPGTGKT~LArAIA~elg~ 790 (1018)
...++|.||+|+|||+|++.+++....
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 345999999999999999999998753
No 373
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.55 E-value=0.002 Score=66.35 Aligned_cols=34 Identities=21% Similarity=0.480 Sum_probs=27.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch
Q 001746 767 ILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS 802 (1018)
Q Consensus 767 VLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~s 802 (1018)
|+|.||||+|||++|+.||..+|+.. +++.+++.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~--is~~d~lr 35 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTH--LSAGDLLR 35 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE--EECChHHH
Confidence 78999999999999999999998654 45555543
No 374
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.54 E-value=0.025 Score=60.87 Aligned_cols=37 Identities=27% Similarity=0.391 Sum_probs=29.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEec
Q 001746 761 LRPCKGILLFGPPGTGKTLLAKALATEA----GANFISITG 797 (1018)
Q Consensus 761 ~~p~~gVLL~GPPGTGKT~LArAIA~el----g~~fi~Is~ 797 (1018)
+.+..-++|.|+||+|||+++..+|... +.+++.+++
T Consensus 10 l~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 10 LQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 4556679999999999999999887654 777777764
No 375
>PRK14532 adenylate kinase; Provisional
Probab=96.53 E-value=0.0022 Score=66.58 Aligned_cols=36 Identities=33% Similarity=0.587 Sum_probs=29.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchh
Q 001746 766 GILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSK 803 (1018)
Q Consensus 766 gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~s~ 803 (1018)
.|+|.||||+|||++|+.||+.+|++++ +..+++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~i--s~~d~lr~ 37 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQL--STGDMLRA 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE--eCcHHHHH
Confidence 4899999999999999999999987665 44454443
No 376
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=96.52 E-value=0.071 Score=64.64 Aligned_cols=174 Identities=20% Similarity=0.177 Sum_probs=95.4
Q ss_pred cccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE------------
Q 001746 728 FDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISI------------ 795 (1018)
Q Consensus 728 fdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~I------------ 795 (1018)
|..|-|-+.+|.-|.-.+.--..+..- .+-.++.-.+|+|.|.|||||+-+.++++.-+-..++.-
T Consensus 344 ~PsIyGhe~VK~GilL~LfGGv~K~a~--eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTaa 421 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSLFGGVHKSAG--EGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTAA 421 (764)
T ss_pred CccccchHHHHhhHHHHHhCCccccCC--CCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceEE
Confidence 335678888888775544332222211 111134445699999999999999999988764333221
Q ss_pred -eccccchhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhh-ccccccCCCcEEEE
Q 001746 796 -TGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAW-DGLRSKESQKILIL 873 (1018)
Q Consensus 796 -s~seL~s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~L-dgl~~~~~~~VlVI 873 (1018)
.-.+-.+.|.-+.-.. .-....|..|||+|.+--+.+ ......|-++-+..- -|+...-+.+.-||
T Consensus 422 VvkD~esgdf~iEAGAL--------mLADnGICCIDEFDKMd~~dq----vAihEAMEQQtISIaKAGv~aTLnARtSIl 489 (764)
T KOG0480|consen 422 VVKDEESGDFTIEAGAL--------MLADNGICCIDEFDKMDVKDQ----VAIHEAMEQQTISIAKAGVVATLNARTSIL 489 (764)
T ss_pred EEecCCCCceeeecCcE--------EEccCceEEechhcccChHhH----HHHHHHHHhheehheecceEEeecchhhhh
Confidence 0011111111111000 011347999999999843211 111112222221111 12221123355688
Q ss_pred EecCCCC-------------CCcHHHHhccCccc-cccCCCHHHHHHHHHHHHhcc
Q 001746 874 GATNRPF-------------DLDDAVIRRLPRRI-YVDLPDAENRMKILRIFLAHE 915 (1018)
Q Consensus 874 aTTN~p~-------------~LD~aLlrRFd~~I-~V~lPd~eeR~eILk~~L~~~ 915 (1018)
||+|... .+.+++++|||..+ .+.-|++..-..|-++++..+
T Consensus 490 AAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h 545 (764)
T KOG0480|consen 490 AAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLH 545 (764)
T ss_pred hhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHh
Confidence 8888652 27789999998543 457788888888888877653
No 377
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=96.51 E-value=0.014 Score=66.65 Aligned_cols=93 Identities=14% Similarity=0.219 Sum_probs=61.0
Q ss_pred HHHHHHHHHhh-CCCeEEEEcCchhhhhhccCcchHHHHHHHHHHH--HhcCC-CCEEEEeeccCCCCCccccccccccc
Q 001746 472 AMEALCEVLHS-TQPLIVYFPDSSLWLSRAVPRCNRKEFVRKVEEM--FDQLS-GPVVLICGQNKNETGPKEKEKFTMIL 547 (1018)
Q Consensus 472 ~i~~L~e~~~~-~~p~Iiff~did~~~~~s~~~~~~~~~~s~~~~~--l~~l~-g~v~vi~~~~~~~~~~~~~~~~~~~~ 547 (1018)
+++.+++.+.. .+|.||+|||+|.+.... ..+...|..+ ...++ .++.+|+.+|.++.
T Consensus 116 ~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~------~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~------------ 177 (365)
T TIGR02928 116 VFRRLYKELNERGDSLIIVLDEIDYLVGDD------DDLLYQLSRARSNGDLDNAKVGVIGISNDLKF------------ 177 (365)
T ss_pred HHHHHHHHHHhcCCeEEEEECchhhhccCC------cHHHHhHhccccccCCCCCeEEEEEEECCcch------------
Confidence 46667776654 578999999999987221 1232223332 23344 55666655554330
Q ss_pred cccccccCCCCchhhhhcccccCCCcchHHHHhccc-cEEEEcCCChHHHHHHHHHHHH
Q 001746 548 PNFGRLAKLPLPLQRLTEGLKATKRSDDNEIYNLFT-NVLSIHPPKEEDLLRTFNKQVE 605 (1018)
Q Consensus 548 ~~~~~~~~~~~~~~~LvIGmTnR~d~iD~aL~rrFe-~~ieI~LPdeegRl~Il~iht~ 605 (1018)
.+.+++.+.+||. ..++|++++.+...+|++.+++
T Consensus 178 -----------------------~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 178 -----------------------RENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred -----------------------HhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 1236778887885 7899999999999999998865
No 378
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.51 E-value=0.002 Score=65.30 Aligned_cols=32 Identities=47% Similarity=0.802 Sum_probs=29.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001746 765 KGILLFGPPGTGKTLLAKALATEAGANFISIT 796 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is 796 (1018)
.+||++|-||||||+++..||..++++++.++
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 46999999999999999999999999998764
No 379
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.51 E-value=0.032 Score=59.77 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=29.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 001746 761 LRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGS 798 (1018)
Q Consensus 761 ~~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~s 798 (1018)
+.+...++|.|+||+|||.++..++.+. |-+.++++..
T Consensus 13 i~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e 53 (224)
T TIGR03880 13 FPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE 53 (224)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 5566779999999999999999887653 6666666553
No 380
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.49 E-value=0.012 Score=62.41 Aligned_cols=69 Identities=30% Similarity=0.470 Sum_probs=43.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH-----hCCcE-------------EEEeccc-cc---hhhhhhHHHHHHHHHHHHHhc
Q 001746 765 KGILLFGPPGTGKTLLAKALATE-----AGANF-------------ISITGST-LT---SKWFGDAEKLTKALFSFASKL 822 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~e-----lg~~f-------------i~Is~se-L~---s~~~ge~ek~I~~lF~~A~k~ 822 (1018)
+-++|.||.|+|||+|.+.|+.. .|.++ ..++..+ +. +.+..+. ..+..++..+...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~-~~~~~iL~~~~~~ 104 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAEL-RRLKEIVEKAKKG 104 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHH-HHHHHHHHhccCC
Confidence 56899999999999999999843 34432 1111111 10 1111122 4466777766555
Q ss_pred CCeEEEecchhh
Q 001746 823 APVIIFVDEVDS 834 (1018)
Q Consensus 823 ~PsIIfIDEID~ 834 (1018)
.|.+|++||.-.
T Consensus 105 ~p~llllDEp~~ 116 (199)
T cd03283 105 EPVLFLLDEIFK 116 (199)
T ss_pred CCeEEEEecccC
Confidence 899999999743
No 381
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.47 E-value=0.006 Score=70.82 Aligned_cols=110 Identities=22% Similarity=0.297 Sum_probs=60.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----C-CcEEEEeccccch----------hhhhh------HHHHHHHHHHHHHh
Q 001746 763 PCKGILLFGPPGTGKTLLAKALATEA----G-ANFISITGSTLTS----------KWFGD------AEKLTKALFSFASK 821 (1018)
Q Consensus 763 p~~gVLL~GPPGTGKT~LArAIA~el----g-~~fi~Is~seL~s----------~~~ge------~ek~I~~lF~~A~k 821 (1018)
....++|.||+|+|||+++..||..+ | ..+..++...+.. ...+- ....+.... .+.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l--~~l 213 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLAL--AEL 213 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHH--HHh
Confidence 34569999999999999999999864 3 2444444433210 00010 001111111 122
Q ss_pred cCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHH
Q 001746 822 LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAV 886 (1018)
Q Consensus 822 ~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~LD~aL 886 (1018)
....+|+||....... +..+.+.+..+..... ....++||.+|+..+.+...+
T Consensus 214 ~~~DlVLIDTaG~~~~-----------d~~l~e~La~L~~~~~-~~~~lLVLsAts~~~~l~evi 266 (374)
T PRK14722 214 RNKHMVLIDTIGMSQR-----------DRTVSDQIAMLHGADT-PVQRLLLLNATSHGDTLNEVV 266 (374)
T ss_pred cCCCEEEEcCCCCCcc-----------cHHHHHHHHHHhccCC-CCeEEEEecCccChHHHHHHH
Confidence 3458999999864310 1112333444433322 234688888888887777544
No 382
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.45 E-value=0.034 Score=59.55 Aligned_cols=37 Identities=30% Similarity=0.414 Sum_probs=28.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001746 761 LRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITG 797 (1018)
Q Consensus 761 ~~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~ 797 (1018)
+.+...++|.||||+|||+|+..++.+. |-+.+.++.
T Consensus 17 i~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 17 IPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 5666789999999999999999877543 555555554
No 383
>PRK13949 shikimate kinase; Provisional
Probab=96.45 E-value=0.0026 Score=65.82 Aligned_cols=32 Identities=50% Similarity=0.701 Sum_probs=29.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001746 765 KGILLFGPPGTGKTLLAKALATEAGANFISIT 796 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is 796 (1018)
+.|+|.|+||+|||++++.+|+.++++++..+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 35999999999999999999999999988765
No 384
>PRK06762 hypothetical protein; Provisional
Probab=96.43 E-value=0.0075 Score=61.30 Aligned_cols=37 Identities=27% Similarity=0.442 Sum_probs=30.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 001746 765 KGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT 801 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~ 801 (1018)
.-|+|+|+||+|||++|+.++..++..++.++...+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r 39 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVR 39 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHH
Confidence 4588999999999999999999997666666655443
No 385
>PRK14531 adenylate kinase; Provisional
Probab=96.43 E-value=0.003 Score=65.71 Aligned_cols=30 Identities=37% Similarity=0.693 Sum_probs=27.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001746 765 KGILLFGPPGTGKTLLAKALATEAGANFIS 794 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~ 794 (1018)
..|+++||||+|||++++.||..+|++++.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is 32 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS 32 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence 359999999999999999999999987765
No 386
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.43 E-value=0.17 Score=56.76 Aligned_cols=28 Identities=29% Similarity=0.265 Sum_probs=24.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhC
Q 001746 762 RPCKGILLFGPPGTGKTLLAKALATEAG 789 (1018)
Q Consensus 762 ~p~~gVLL~GPPGTGKT~LArAIA~elg 789 (1018)
.++..|.|+|+=|+|||++.+.+-+++.
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~ 45 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELK 45 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567899999999999999999988774
No 387
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.43 E-value=0.022 Score=66.64 Aligned_cols=109 Identities=18% Similarity=0.170 Sum_probs=60.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEeccccch-------hh---------hhhHHHHHHHHHHHHH
Q 001746 764 CKGILLFGPPGTGKTLLAKALATEA-------GANFISITGSTLTS-------KW---------FGDAEKLTKALFSFAS 820 (1018)
Q Consensus 764 ~~gVLL~GPPGTGKT~LArAIA~el-------g~~fi~Is~seL~s-------~~---------~ge~ek~I~~lF~~A~ 820 (1018)
+..|+|.||+|+|||+.+..+|..+ +..+..+++..... .| .......+...+...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~- 252 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS- 252 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-
Confidence 4679999999999999999999865 23343333332210 00 001112223333222
Q ss_pred hcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHH
Q 001746 821 KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDA 885 (1018)
Q Consensus 821 k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~LD~a 885 (1018)
....+|+||.+..... ... .+.++...++.... +...++|+.+|....++...
T Consensus 253 -~~~DlVLIDTaGr~~~------~~~----~l~el~~~l~~~~~-~~e~~LVlsat~~~~~~~~~ 305 (388)
T PRK12723 253 -KDFDLVLVDTIGKSPK------DFM----KLAEMKELLNACGR-DAEFHLAVSSTTKTSDVKEI 305 (388)
T ss_pred -CCCCEEEEcCCCCCcc------CHH----HHHHHHHHHHhcCC-CCeEEEEEcCCCCHHHHHHH
Confidence 3457999999987521 111 13344444443321 22578888888877666643
No 388
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.42 E-value=0.0039 Score=68.63 Aligned_cols=98 Identities=24% Similarity=0.366 Sum_probs=59.3
Q ss_pred CcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEe-cccc
Q 001746 725 GVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAG---ANFISIT-GSTL 800 (1018)
Q Consensus 725 ~vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg---~~fi~Is-~seL 800 (1018)
..++++++-.....+.+.+++... .+...+||+.||+|+|||+++++++.+.. ..++.+. ..++
T Consensus 100 ~~sle~l~~~~~~~~~~~~~l~~~------------v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 100 PFSLEDLGESGSIPEEIAEFLRSA------------VRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp --CHCCCCHTHHCHHHHHHHHHHC------------HHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred cccHhhccCchhhHHHHHHHHhhc------------cccceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 356777766666666666665432 12346799999999999999999999873 3444443 2222
Q ss_pred chh------h-hhhHHHHHHHHHHHHHhcCCeEEEecchhh
Q 001746 801 TSK------W-FGDAEKLTKALFSFASKLAPVIIFVDEVDS 834 (1018)
Q Consensus 801 ~s~------~-~ge~ek~I~~lF~~A~k~~PsIIfIDEID~ 834 (1018)
.-. . ..........++..+-+..|.+|+|.||-.
T Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~ 208 (270)
T PF00437_consen 168 RLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRD 208 (270)
T ss_dssp --SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-S
T ss_pred eecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccCC
Confidence 110 0 011233455666777888999999999954
No 389
>PRK06217 hypothetical protein; Validated
Probab=96.40 E-value=0.0031 Score=65.55 Aligned_cols=31 Identities=29% Similarity=0.410 Sum_probs=28.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001746 766 GILLFGPPGTGKTLLAKALATEAGANFISIT 796 (1018)
Q Consensus 766 gVLL~GPPGTGKT~LArAIA~elg~~fi~Is 796 (1018)
.|+|.|+||+|||++|++|+..++++++.++
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4999999999999999999999999887654
No 390
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.38 E-value=0.0029 Score=65.51 Aligned_cols=33 Identities=48% Similarity=0.715 Sum_probs=27.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 001746 767 ILLFGPPGTGKTLLAKALATEAGANFISITGSTLT 801 (1018)
Q Consensus 767 VLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~ 801 (1018)
|+|.||||+|||++|+.||..+|+.++. ..+++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~--~~~l~ 34 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIS--TGDLL 34 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE--CcHHH
Confidence 8999999999999999999999877654 44443
No 391
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.38 E-value=0.049 Score=65.84 Aligned_cols=86 Identities=6% Similarity=0.097 Sum_probs=59.0
Q ss_pred HHHHHHHHhh----CCCeEEEEcCchhhhhhccCcchHHHHHHHHHHHHhcCCCCEEEEeeccCCCCCcccccccccccc
Q 001746 473 MEALCEVLHS----TQPLIVYFPDSSLWLSRAVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILP 548 (1018)
Q Consensus 473 i~~L~e~~~~----~~p~Iiff~did~~~~~s~~~~~~~~~~s~~~~~l~~l~g~v~vi~~~~~~~~~~~~~~~~~~~~~ 548 (1018)
|..+.+.+.. ...-||++||++.+-. .-.+.|++.|+..++.+++|.+++.
T Consensus 113 Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~---------~a~naLLk~LEepp~~~vfI~aTte---------------- 167 (507)
T PRK06645 113 IRRIIESAEYKPLQGKHKIFIIDEVHMLSK---------GAFNALLKTLEEPPPHIIFIFATTE---------------- 167 (507)
T ss_pred HHHHHHHHHhccccCCcEEEEEEChhhcCH---------HHHHHHHHHHhhcCCCEEEEEEeCC----------------
Confidence 3445555532 2345999999997631 2244567777878888888755543
Q ss_pred ccccccCCCCchhhhhcccccCCCcchHHHHhccccEEEEcCCChHHHHHHHHHHHHH
Q 001746 549 NFGRLAKLPLPLQRLTEGLKATKRSDDNEIYNLFTNVLSIHPPKEEDLLRTFNKQVEE 606 (1018)
Q Consensus 549 ~~~~~~~~~~~~~~LvIGmTnR~d~iD~aL~rrFe~~ieI~LPdeegRl~Il~iht~~ 606 (1018)
++.|.++|..|. ..++|..++.+...++++...++
T Consensus 168 ----------------------~~kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~ 202 (507)
T PRK06645 168 ----------------------VQKIPATIISRC-QRYDLRRLSFEEIFKLLEYITKQ 202 (507)
T ss_pred ----------------------hHHhhHHHHhcc-eEEEccCCCHHHHHHHHHHHHHH
Confidence 345778888888 57899999998888888777543
No 392
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.37 E-value=0.0055 Score=68.22 Aligned_cols=68 Identities=25% Similarity=0.391 Sum_probs=43.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC----------cEEEEe-ccccchhh-------hh------hHHHHHHHHHHHHH
Q 001746 765 KGILLFGPPGTGKTLLAKALATEAGA----------NFISIT-GSTLTSKW-------FG------DAEKLTKALFSFAS 820 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~elg~----------~fi~Is-~seL~s~~-------~g------e~ek~I~~lF~~A~ 820 (1018)
.+++|.||+|+|||+|.++++..+.- .+..++ ..++...+ .+ +.......++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 57999999999999999999988732 222121 11221110 00 01112334666777
Q ss_pred hcCCeEEEecch
Q 001746 821 KLAPVIIFVDEV 832 (1018)
Q Consensus 821 k~~PsIIfIDEI 832 (1018)
.+.|.||++||+
T Consensus 192 ~~~P~villDE~ 203 (270)
T TIGR02858 192 SMSPDVIVVDEI 203 (270)
T ss_pred hCCCCEEEEeCC
Confidence 789999999996
No 393
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.37 E-value=0.0031 Score=61.97 Aligned_cols=30 Identities=37% Similarity=0.640 Sum_probs=28.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001746 767 ILLFGPPGTGKTLLAKALATEAGANFISIT 796 (1018)
Q Consensus 767 VLL~GPPGTGKT~LArAIA~elg~~fi~Is 796 (1018)
|.|.|+||+|||++|+.+|..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 789999999999999999999999998776
No 394
>PRK05973 replicative DNA helicase; Provisional
Probab=96.30 E-value=0.039 Score=60.42 Aligned_cols=38 Identities=45% Similarity=0.525 Sum_probs=29.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 001746 761 LRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGS 798 (1018)
Q Consensus 761 ~~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~s 798 (1018)
+.+..-+||.|+||+|||+++-.+|.+. |.++++++..
T Consensus 61 l~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 61 LKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 5666779999999999999999887655 6666666543
No 395
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.29 E-value=0.0036 Score=62.44 Aligned_cols=28 Identities=46% Similarity=0.780 Sum_probs=25.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001746 767 ILLFGPPGTGKTLLAKALATEAGANFIS 794 (1018)
Q Consensus 767 VLL~GPPGTGKT~LArAIA~elg~~fi~ 794 (1018)
++|.|+||+|||++|+.++..++..++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 7899999999999999999998876654
No 396
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.29 E-value=0.011 Score=71.01 Aligned_cols=95 Identities=20% Similarity=0.268 Sum_probs=60.9
Q ss_pred CcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEe-cccc
Q 001746 725 GVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAG---ANFISIT-GSTL 800 (1018)
Q Consensus 725 ~vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg---~~fi~Is-~seL 800 (1018)
..+++++|-..+..+.++.++.. +..-+|++||+|+|||++..++.+++. .+++.+. +.++
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~~~---------------~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~ 282 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLIRR---------------PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEY 282 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHHhc---------------CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeee
Confidence 45788888888888888876632 112379999999999999999887763 3455542 2222
Q ss_pred chhhh-----h-hHHHHHHHHHHHHHhcCCeEEEecchhh
Q 001746 801 TSKWF-----G-DAEKLTKALFSFASKLAPVIIFVDEVDS 834 (1018)
Q Consensus 801 ~s~~~-----g-e~ek~I~~lF~~A~k~~PsIIfIDEID~ 834 (1018)
.-... . ............+-+..|.||+|.||-.
T Consensus 283 ~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiRd 322 (486)
T TIGR02533 283 QIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIRD 322 (486)
T ss_pred ecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCCC
Confidence 11101 0 1111233444455678999999999954
No 397
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.26 E-value=0.02 Score=67.12 Aligned_cols=121 Identities=20% Similarity=0.191 Sum_probs=68.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcch
Q 001746 766 GILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEH 845 (1018)
Q Consensus 766 gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~ 845 (1018)
-++|+||.+||||++++.+.....-.++.++..++......- ...-..+..++......||||||+.+-+.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v~~W------- 109 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNVPDW------- 109 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCchhH-------
Confidence 799999999999999988888775556666655554332221 11222222333325579999999886321
Q ss_pred HHHHHHHHHHHhhhccccccCCCcEEEEEecCCC--CCCcHHHHhccCccccccCCCHHHHHH
Q 001746 846 EATRRMRNEFMSAWDGLRSKESQKILILGATNRP--FDLDDAVIRRLPRRIYVDLPDAENRMK 906 (1018)
Q Consensus 846 e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p--~~LD~aLlrRFd~~I~V~lPd~eeR~e 906 (1018)
.+.+..+ .|.. ...+++.+++... ..+.+.+..|. ..+.+.+.+..+...
T Consensus 110 ---~~~lk~l---~d~~----~~~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 110 ---ERALKYL---YDRG----NLDVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred ---HHHHHHH---Hccc----cceEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHh
Confidence 1222222 2221 1134554444222 22334555574 566677777777754
No 398
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=96.25 E-value=0.0052 Score=72.00 Aligned_cols=63 Identities=25% Similarity=0.322 Sum_probs=39.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccccchhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhh
Q 001746 762 RPCKGILLFGPPGTGKTLLAKALATEA----GANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLL 836 (1018)
Q Consensus 762 ~p~~gVLL~GPPGTGKT~LArAIA~el----g~~fi~Is~seL~s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~ 836 (1018)
....++++.||+|||||+++.+++.+. | -.++.+.|+.. ... ..+.. -....+|+|||+..+.
T Consensus 207 e~~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~----L~~---~~lg~--v~~~DlLI~DEvgylp 273 (449)
T TIGR02688 207 EPNYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYN----IST---RQIGL--VGRWDVVAFDEVATLK 273 (449)
T ss_pred hcCCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHH----HHH---HHHhh--hccCCEEEEEcCCCCc
Confidence 344679999999999999999998772 4 22233333222 111 11111 1245899999998864
No 399
>PRK14530 adenylate kinase; Provisional
Probab=96.25 E-value=0.0042 Score=66.24 Aligned_cols=30 Identities=40% Similarity=0.672 Sum_probs=27.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001746 766 GILLFGPPGTGKTLLAKALATEAGANFISI 795 (1018)
Q Consensus 766 gVLL~GPPGTGKT~LArAIA~elg~~fi~I 795 (1018)
.|+|.||||+|||++|+.||..++++++..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 599999999999999999999999887754
No 400
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.25 E-value=0.0091 Score=69.36 Aligned_cols=69 Identities=23% Similarity=0.282 Sum_probs=45.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecc-ccch-----------hhhhhHHHHHHHHHHHHHhcCCeEEE
Q 001746 766 GILLFGPPGTGKTLLAKALATEAG-----ANFISITGS-TLTS-----------KWFGDAEKLTKALFSFASKLAPVIIF 828 (1018)
Q Consensus 766 gVLL~GPPGTGKT~LArAIA~elg-----~~fi~Is~s-eL~s-----------~~~ge~ek~I~~lF~~A~k~~PsIIf 828 (1018)
.+|++||+|+|||+++++++.+.. .+++.+.-+ ++.- ...+............+.+..|.+|+
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I~ 230 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIG 230 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEEe
Confidence 489999999999999999988772 345554322 2210 01111112344556667788999999
Q ss_pred ecchhh
Q 001746 829 VDEVDS 834 (1018)
Q Consensus 829 IDEID~ 834 (1018)
|.|+-.
T Consensus 231 vGEiRd 236 (372)
T TIGR02525 231 VGEIRD 236 (372)
T ss_pred eCCCCC
Confidence 999953
No 401
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.24 E-value=0.011 Score=62.73 Aligned_cols=108 Identities=23% Similarity=0.313 Sum_probs=56.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchh-------h---h---------h-hHHHHHHHHHHHHH
Q 001746 764 CKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSK-------W---F---------G-DAEKLTKALFSFAS 820 (1018)
Q Consensus 764 ~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~s~-------~---~---------g-e~ek~I~~lF~~A~ 820 (1018)
|+-++|.||+|+|||+.+..+|..+ +..+--+++...... | . . +....+......+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 4568999999999999999998876 444433333222100 0 0 0 12333444555554
Q ss_pred hcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCc
Q 001746 821 KLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLD 883 (1018)
Q Consensus 821 k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~LD 883 (1018)
...-.+|+||=..... .+.+....+ ..++..+ .+...++|+.++...+.+.
T Consensus 81 ~~~~D~vlIDT~Gr~~------~d~~~~~el-~~~~~~~-----~~~~~~LVlsa~~~~~~~~ 131 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRSP------RDEELLEEL-KKLLEAL-----NPDEVHLVLSATMGQEDLE 131 (196)
T ss_dssp HTTSSEEEEEE-SSSS------THHHHHHHH-HHHHHHH-----SSSEEEEEEEGGGGGHHHH
T ss_pred hcCCCEEEEecCCcch------hhHHHHHHH-HHHhhhc-----CCccceEEEecccChHHHH
Confidence 4445788888764421 111112222 2233332 2234567777776666555
No 402
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.22 E-value=0.0039 Score=64.31 Aligned_cols=35 Identities=23% Similarity=0.367 Sum_probs=29.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccc
Q 001746 765 KGILLFGPPGTGKTLLAKALATEAGANFISITGST 799 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~se 799 (1018)
+-|+|.|+||+|||++|++++..++.+++.++...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~ 37 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDS 37 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccH
Confidence 45899999999999999999999988777665443
No 403
>PRK04195 replication factor C large subunit; Provisional
Probab=96.21 E-value=0.059 Score=64.70 Aligned_cols=62 Identities=27% Similarity=0.322 Sum_probs=44.4
Q ss_pred cccccccccchhhHHHHHHhhhhcccCccchhhcccccCCCCCceeeccCCchhHHHHHHHHHHHHhhCCcEEeeecC
Q 001746 180 SWDTFPYYINENTKSLLVECVGSHLKHKKFTATFGARLTSSSGRILLRSVPGTELYRERLIRALARELQVPLLVLDSS 257 (1018)
Q Consensus 180 sf~~fpyylse~tk~~L~~~~~~hl~~~~~~~~~~~~l~~~~~riLL~~~~gsE~yqe~L~kALA~~~~a~ll~~ds~ 257 (1018)
+|+++-+. +..+..|.+.+-.+.+. ...+.+||+|||| ++++.||+|||++++..++.++.+
T Consensus 12 ~l~dlvg~--~~~~~~l~~~l~~~~~g------------~~~~~lLL~GppG--~GKTtla~ala~el~~~~ielnas 73 (482)
T PRK04195 12 TLSDVVGN--EKAKEQLREWIESWLKG------------KPKKALLLYGPPG--VGKTSLAHALANDYGWEVIELNAS 73 (482)
T ss_pred CHHHhcCC--HHHHHHHHHHHHHHhcC------------CCCCeEEEECCCC--CCHHHHHHHHHHHcCCCEEEEccc
Confidence 44554443 77777777766433310 1257799999999 999999999999999887777653
No 404
>PRK13764 ATPase; Provisional
Probab=96.21 E-value=0.0089 Score=73.16 Aligned_cols=70 Identities=24% Similarity=0.323 Sum_probs=41.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEe-cccc-----chhhhhhHHHHHHHHHHHHHhcCCeEEEecchhh
Q 001746 764 CKGILLFGPPGTGKTLLAKALATEAG---ANFISIT-GSTL-----TSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDS 834 (1018)
Q Consensus 764 ~~gVLL~GPPGTGKT~LArAIA~elg---~~fi~Is-~seL-----~s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~ 834 (1018)
..+||++||||+|||++++|++.++. ..+..+. +.++ ...+.. ...........+-+..|.+|++||+-.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~-~~~~~~~~~~~lLR~rPD~IivGEiRd 335 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSK-LEGSMEETADILLLVRPDYTIYDEMRK 335 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEee-ccccHHHHHHHHHhhCCCEEEECCCCC
Confidence 36799999999999999999998873 3332331 1122 111110 000112222233467899999999843
No 405
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.18 E-value=0.045 Score=54.96 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=22.6
Q ss_pred ceEEEEcCCCChHHH-HHHHHHHHhC----CcEEEEec
Q 001746 765 KGILLFGPPGTGKTL-LAKALATEAG----ANFISITG 797 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~-LArAIA~elg----~~fi~Is~ 797 (1018)
+.+++.||+|+|||. ++..+...+. ..++.+.+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p 62 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVP 62 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeC
Confidence 469999999999999 5555555443 33555544
No 406
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=96.17 E-value=0.0077 Score=66.75 Aligned_cols=73 Identities=27% Similarity=0.379 Sum_probs=50.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHH------HhCCcEEEEeccccchhhhhh-HHHHHHHHHHHHHh--------cCCeEEEe
Q 001746 765 KGILLFGPPGTGKTLLAKALAT------EAGANFISITGSTLTSKWFGD-AEKLTKALFSFASK--------LAPVIIFV 829 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~------elg~~fi~Is~seL~s~~~ge-~ek~I~~lF~~A~k--------~~PsIIfI 829 (1018)
.++||.||.|.||++||+.|.. .+..+|+.++|.++-++..-. .-..++..|.-|+. ....++|+
T Consensus 209 ~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggmlfl 288 (531)
T COG4650 209 APILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGMLFL 288 (531)
T ss_pred CCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceEeh
Confidence 4599999999999999999853 457799999999986542111 11223334433322 23579999
Q ss_pred cchhhhhh
Q 001746 830 DEVDSLLG 837 (1018)
Q Consensus 830 DEID~L~~ 837 (1018)
|||..|..
T Consensus 289 deigelga 296 (531)
T COG4650 289 DEIGELGA 296 (531)
T ss_pred HhhhhcCc
Confidence 99998853
No 407
>PRK10436 hypothetical protein; Provisional
Probab=96.16 E-value=0.013 Score=69.99 Aligned_cols=102 Identities=17% Similarity=0.225 Sum_probs=64.6
Q ss_pred ccCCCCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEE
Q 001746 718 VVPPGEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAG---ANFIS 794 (1018)
Q Consensus 718 ii~~~e~~vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg---~~fi~ 794 (1018)
+++......+++++|-.....+.++.++.. +..-||++||+|+|||++..++..++. .+++.
T Consensus 187 ll~~~~~~~~L~~LG~~~~~~~~l~~~~~~---------------~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~T 251 (462)
T PRK10436 187 LLQQVQQALDLETLGMTPAQLAQFRQALQQ---------------PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICS 251 (462)
T ss_pred EeccccCCCCHHHcCcCHHHHHHHHHHHHh---------------cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEE
Confidence 334333345889999888888888877633 223489999999999999988877763 34544
Q ss_pred Ee-ccccchhh-----hh-hHHHHHHHHHHHHHhcCCeEEEecchhh
Q 001746 795 IT-GSTLTSKW-----FG-DAEKLTKALFSFASKLAPVIIFVDEVDS 834 (1018)
Q Consensus 795 Is-~seL~s~~-----~g-e~ek~I~~lF~~A~k~~PsIIfIDEID~ 834 (1018)
+- +.++.-.. +. ............+-+..|.||+|.||-.
T Consensus 252 iEDPvE~~l~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIRD 298 (462)
T PRK10436 252 VEDPVEIPLAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIRD 298 (462)
T ss_pred ecCCccccCCCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCCC
Confidence 42 22221110 11 1112244455556678999999999853
No 408
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=96.14 E-value=0.0061 Score=73.09 Aligned_cols=158 Identities=21% Similarity=0.314 Sum_probs=86.7
Q ss_pred cccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc-----------
Q 001746 730 DIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGS----------- 798 (1018)
Q Consensus 730 DIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~s----------- 798 (1018)
.|.|..++|..+.-.+.--..+.. ...-.++.-.+|||.|.|||||+-+.+.+++-....++...-.
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~--~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~ 527 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNP--GGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVR 527 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCC--CCCceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEe
Confidence 467899999988766543222111 0001123345699999999999999999998875554432110
Q ss_pred --ccchhhhhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHH-----HHHHhhhccccccCCCcEE
Q 001746 799 --TLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMR-----NEFMSAWDGLRSKESQKIL 871 (1018)
Q Consensus 799 --eL~s~~~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il-----~~LL~~Ldgl~~~~~~~Vl 871 (1018)
-+...|.-+.... -.| ...|.+|||+|.+......+ -++++.+.. .-+.+.| ..+..
T Consensus 528 KdPvtrEWTLEaGAL-----VLA---DkGvClIDEFDKMndqDRtS-IHEAMEQQSISISKAGIVtsL-------qArct 591 (854)
T KOG0477|consen 528 KDPVTREWTLEAGAL-----VLA---DKGVCLIDEFDKMNDQDRTS-IHEAMEQQSISISKAGIVTSL-------QARCT 591 (854)
T ss_pred eCCccceeeeccCeE-----EEc---cCceEEeehhhhhcccccch-HHHHHHhcchhhhhhhHHHHH-------Hhhhh
Confidence 0111222111111 112 23788999999996543222 133322110 0122222 23567
Q ss_pred EEEecCCC---C----------CCcHHHHhccCccccccC---CCHHHHH
Q 001746 872 ILGATNRP---F----------DLDDAVIRRLPRRIYVDL---PDAENRM 905 (1018)
Q Consensus 872 VIaTTN~p---~----------~LD~aLlrRFd~~I~V~l---Pd~eeR~ 905 (1018)
||||+|.. . +|.+.+++||+....|.- |-.+++.
T Consensus 592 vIAAanPigGRY~~s~tFaqNV~ltePIlSRFDiLcVvkD~vd~~~De~l 641 (854)
T KOG0477|consen 592 VIAAANPIGGRYNPSLTFAQNVDLTEPILSRFDILCVVKDTVDPVQDEKL 641 (854)
T ss_pred hheecCCCCCccCCccchhhccccccchhhhcceeeeeecccCchhHHHH
Confidence 89998862 1 366789999986555432 4444443
No 409
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.13 E-value=0.0043 Score=64.58 Aligned_cols=32 Identities=34% Similarity=0.525 Sum_probs=29.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001746 765 KGILLFGPPGTGKTLLAKALATEAGANFISIT 796 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is 796 (1018)
++|+|.|++|+|||++.+++|+.++.+|+-.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 56999999999999999999999999998654
No 410
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.12 E-value=0.0056 Score=66.54 Aligned_cols=31 Identities=35% Similarity=0.652 Sum_probs=27.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001746 765 KGILLFGPPGTGKTLLAKALATEAGANFISI 795 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~I 795 (1018)
..|+|.||||+|||++|+.+|+.+|++++.+
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~ 37 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINM 37 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 4599999999999999999999999877754
No 411
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.12 E-value=0.037 Score=59.41 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=20.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 001746 765 KGILLFGPPGTGKTLLAKALAT 786 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~ 786 (1018)
+.++|+||.|+|||++.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6699999999999999999983
No 412
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.12 E-value=0.0042 Score=62.90 Aligned_cols=28 Identities=46% Similarity=0.781 Sum_probs=24.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001746 767 ILLFGPPGTGKTLLAKALATEAGANFIS 794 (1018)
Q Consensus 767 VLL~GPPGTGKT~LArAIA~elg~~fi~ 794 (1018)
|+|.||+|+|||++|+.+++.++..++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 5789999999999999999999876653
No 413
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.12 E-value=0.0054 Score=64.24 Aligned_cols=33 Identities=42% Similarity=0.747 Sum_probs=26.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecccc
Q 001746 766 GILLFGPPGTGKTLLAKALATEAGANFISITGSTL 800 (1018)
Q Consensus 766 gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL 800 (1018)
.|+|.||||+||||+|+.||+.+++ ..++..++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i--~hlstgd~ 34 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGL--PHLDTGDI 34 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC--cEEcHhHH
Confidence 4899999999999999999999554 44454443
No 414
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.11 E-value=0.12 Score=60.91 Aligned_cols=104 Identities=16% Similarity=0.109 Sum_probs=54.8
Q ss_pred CcHHHHhccCccccccCCCHHHHHHHHHHHHhccC-CC------------C-----cccHHHHHHHccCC--CHHHHHHH
Q 001746 882 LDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHES-LE------------S-----GFQFNELANATEGY--SGSDLKNL 941 (1018)
Q Consensus 882 LD~aLlrRFd~~I~V~lPd~eeR~eILk~~L~~~~-l~------------~-----dvdl~~LA~~TeGf--SgaDL~~L 941 (1018)
|..+|=.|.-+.|.+.-.+.+.-+.++...+.... .. . ..+..++-...+-+ --.||..+
T Consensus 199 LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~l 278 (431)
T PF10443_consen 199 LSKALPNRVFKTISLSDASPESAKQYVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFL 278 (431)
T ss_pred HHHhCCCCceeEEeecCCCHHHHHHHHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHH
Confidence 66676665447788888888888888887776531 10 0 12333333332222 22466666
Q ss_pred HHHH-----HHHHHHHHHHHH----Hh--cCCCCCCCCccCCCHHHHHHHHHhhC
Q 001746 942 CIAA-----AYRPVQELLEEE----RK--RGKNDAAPVLRPLKLEDFIQSKAKVG 985 (1018)
Q Consensus 942 ~~~A-----a~~Airr~~~~~----~~--~~~~~~~~~~rpLT~eDF~~Al~kv~ 985 (1018)
+++. ...|+.+++.+. .+ ...........+.+.+.+-.-++.+.
T Consensus 279 vrRiksGe~p~~Av~~iI~qsa~eI~k~fl~~~~~~~~~~~Wt~~QaW~LIk~Ls 333 (431)
T PF10443_consen 279 VRRIKSGESPEEAVEEIISQSASEIRKMFLLDDSDDAKSLKWTREQAWYLIKLLS 333 (431)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHhc
Confidence 5542 233444433321 11 11122233456788888888777773
No 415
>PRK08233 hypothetical protein; Provisional
Probab=96.11 E-value=0.037 Score=56.54 Aligned_cols=33 Identities=24% Similarity=0.268 Sum_probs=26.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-CcEEEEec
Q 001746 765 KGILLFGPPGTGKTLLAKALATEAG-ANFISITG 797 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~elg-~~fi~Is~ 797 (1018)
.-|.|.|+||+|||++|+.|+..++ .+++.++.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~ 37 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDR 37 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECC
Confidence 3478899999999999999999985 44554443
No 416
>PRK14528 adenylate kinase; Provisional
Probab=96.09 E-value=0.0057 Score=64.05 Aligned_cols=31 Identities=42% Similarity=0.634 Sum_probs=27.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001746 765 KGILLFGPPGTGKTLLAKALATEAGANFISI 795 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~I 795 (1018)
+.|++.||||+|||++|+.+|..+|++++.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 4589999999999999999999999877653
No 417
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.08 E-value=0.0062 Score=62.22 Aligned_cols=32 Identities=34% Similarity=0.575 Sum_probs=28.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001746 765 KGILLFGPPGTGKTLLAKALATEAGANFISIT 796 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is 796 (1018)
..|+|.|++|+|||++++.+|..+|.+|+..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 35899999999999999999999999988653
No 418
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.07 E-value=0.012 Score=69.84 Aligned_cols=107 Identities=20% Similarity=0.194 Sum_probs=67.7
Q ss_pred hhcccccCCCCCCcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE
Q 001746 713 NFVSAVVPPGEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANF 792 (1018)
Q Consensus 713 ~~~~~ii~~~e~~vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~f 792 (1018)
.....+++......+|+++|......+.+...+.. |..=+|++||.|+|||+...++.++++.+.
T Consensus 222 kvVlRil~~~~~~l~l~~Lg~~~~~~~~~~~~~~~---------------p~GliLvTGPTGSGKTTTLY~~L~~ln~~~ 286 (500)
T COG2804 222 KVVLRILDKDQVILDLEKLGMSPFQLARLLRLLNR---------------PQGLILVTGPTGSGKTTTLYAALSELNTPE 286 (500)
T ss_pred EEEEEEeccccccCCHHHhCCCHHHHHHHHHHHhC---------------CCeEEEEeCCCCCCHHHHHHHHHHHhcCCC
Confidence 33444555555567899999999999999887733 222378899999999999999999985443
Q ss_pred ---EEEe-ccccchhhhhh------HHHHHHHHHHHHHhcCCeEEEecchhh
Q 001746 793 ---ISIT-GSTLTSKWFGD------AEKLTKALFSFASKLAPVIIFVDEVDS 834 (1018)
Q Consensus 793 ---i~Is-~seL~s~~~ge------~ek~I~~lF~~A~k~~PsIIfIDEID~ 834 (1018)
+.+. +-+..-.-+.. ..-.....+...-++.|.||+|.||-.
T Consensus 287 ~nI~TiEDPVE~~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIRD 338 (500)
T COG2804 287 RNIITIEDPVEYQLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIRD 338 (500)
T ss_pred ceEEEeeCCeeeecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccCC
Confidence 3321 11111100000 001122333344567899999999954
No 419
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.06 E-value=0.0094 Score=68.43 Aligned_cols=69 Identities=20% Similarity=0.263 Sum_probs=44.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC----CcEEEEe-ccccc---------hhhhhhHHHHHHHHHHHHHhcCCeEEEec
Q 001746 765 KGILLFGPPGTGKTLLAKALATEAG----ANFISIT-GSTLT---------SKWFGDAEKLTKALFSFASKLAPVIIFVD 830 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~elg----~~fi~Is-~seL~---------s~~~ge~ek~I~~lF~~A~k~~PsIIfID 830 (1018)
..+||.||+|+|||+++++++.++. .+++.+. ..++. ....+.........+..+-+..|.+|++|
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vg 202 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIG 202 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEe
Confidence 4589999999999999999998764 2344332 11211 00112111224455556677899999999
Q ss_pred chh
Q 001746 831 EVD 833 (1018)
Q Consensus 831 EID 833 (1018)
|+-
T Consensus 203 Eir 205 (343)
T TIGR01420 203 EMR 205 (343)
T ss_pred CCC
Confidence 994
No 420
>PRK06547 hypothetical protein; Provisional
Probab=96.05 E-value=0.0064 Score=63.25 Aligned_cols=34 Identities=35% Similarity=0.523 Sum_probs=29.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001746 763 PCKGILLFGPPGTGKTLLAKALATEAGANFISIT 796 (1018)
Q Consensus 763 p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is 796 (1018)
++.-|+|.|++|+|||++|+.++..++.+++.++
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 3466899999999999999999999988877653
No 421
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.05 E-value=0.013 Score=63.37 Aligned_cols=71 Identities=25% Similarity=0.394 Sum_probs=46.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--C------CcEEEEecc-ccchhhhh-------------hHHHHHHHHHHHHHhc
Q 001746 765 KGILLFGPPGTGKTLLAKALATEA--G------ANFISITGS-TLTSKWFG-------------DAEKLTKALFSFASKL 822 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~el--g------~~fi~Is~s-eL~s~~~g-------------e~ek~I~~lF~~A~k~ 822 (1018)
.+.||.||||+|||+|.+-||.-+ | ..+..++-. ++.+...| ..+-.-..+....+.+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm 217 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSM 217 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhc
Confidence 468999999999999999999876 2 223334432 33221111 1222233445566788
Q ss_pred CCeEEEecchhhh
Q 001746 823 APVIIFVDEVDSL 835 (1018)
Q Consensus 823 ~PsIIfIDEID~L 835 (1018)
.|.||++|||...
T Consensus 218 ~PEViIvDEIGt~ 230 (308)
T COG3854 218 SPEVIIVDEIGTE 230 (308)
T ss_pred CCcEEEEeccccH
Confidence 9999999999764
No 422
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.04 E-value=0.018 Score=58.16 Aligned_cols=34 Identities=32% Similarity=0.567 Sum_probs=28.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 001746 767 ILLFGPPGTGKTLLAKALATEA---GANFISITGSTL 800 (1018)
Q Consensus 767 VLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL 800 (1018)
|+|.|+||+|||++|+.++..+ +.+.+.++...+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~ 38 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV 38 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 7899999999999999999998 667777765443
No 423
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.04 E-value=0.042 Score=62.35 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=30.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccc
Q 001746 761 LRPCKGILLFGPPGTGKTLLAKALATEA---------GANFISITGST 799 (1018)
Q Consensus 761 ~~p~~gVLL~GPPGTGKT~LArAIA~el---------g~~fi~Is~se 799 (1018)
+....-++|+||||+|||.|+..+|... +..+++++..+
T Consensus 99 i~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 99 IETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred ccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 4556678999999999999999998763 23677777654
No 424
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.03 E-value=0.0069 Score=62.29 Aligned_cols=30 Identities=30% Similarity=0.522 Sum_probs=26.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001746 765 KGILLFGPPGTGKTLLAKALATEAGANFIS 794 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~ 794 (1018)
.-|+|.||||+|||++++.++.++|+..+.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~ 33 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHLS 33 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 458899999999999999999999876554
No 425
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=96.01 E-value=0.0051 Score=53.74 Aligned_cols=35 Identities=31% Similarity=0.784 Sum_probs=30.6
Q ss_pred cCCCHHHHHHHHHhhCCCcchhhhhHHHHHHHHHHhC
Q 001746 970 RPLKLEDFIQSKAKVGPSVAYDAASMNELRKWNEQYG 1006 (1018)
Q Consensus 970 rpLT~eDF~~Al~kv~PSvs~~~~~m~el~kW~diyG 1006 (1018)
.+|+++||..|+++++|||+.+ .+..+.+|++.||
T Consensus 28 p~it~~DF~~Al~~~kpSVs~~--dl~~ye~w~~~FG 62 (62)
T PF09336_consen 28 PPITMEDFEEALKKVKPSVSQE--DLKKYEEWTKEFG 62 (62)
T ss_dssp HHBCHHHHHHHHHTCGGSS-HH--HHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcC
Confidence 4799999999999999999965 3778999999998
No 426
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.01 E-value=0.071 Score=62.42 Aligned_cols=35 Identities=31% Similarity=0.340 Sum_probs=27.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 001746 764 CKGILLFGPPGTGKTLLAKALATEA---GANFISITGS 798 (1018)
Q Consensus 764 ~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~s 798 (1018)
++.|+|.||+|+|||+++..||..+ |..+..+++.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aD 278 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTD 278 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecC
Confidence 4679999999999999999999877 4445545543
No 427
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=95.99 E-value=0.093 Score=57.67 Aligned_cols=133 Identities=17% Similarity=0.260 Sum_probs=72.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEeccccchhh--------------hhhHHHH-------HHHHHH
Q 001746 761 LRPCKGILLFGPPGTGKTLLAKALATEAGA--NFISITGSTLTSKW--------------FGDAEKL-------TKALFS 817 (1018)
Q Consensus 761 ~~p~~gVLL~GPPGTGKT~LArAIA~elg~--~fi~Is~seL~s~~--------------~ge~ek~-------I~~lF~ 817 (1018)
...+-.+++.|++|||||+|+..+...+.- ..+.+-++.....+ ..+.+.. +.+...
T Consensus 10 ~~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~ 89 (241)
T PF04665_consen 10 LKDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIK 89 (241)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhh
Confidence 334457999999999999999999887743 22222222211111 0111111 111211
Q ss_pred HHHh---cCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHhccCccc
Q 001746 818 FASK---LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRI 894 (1018)
Q Consensus 818 ~A~k---~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I 894 (1018)
.... .++.+|++||+.. . ..-...+..++.. | ..-++-+|..+.....|++.++.-.+..+
T Consensus 90 k~~~~k~~~~~LiIlDD~~~---~-------~~k~~~l~~~~~~--g----RH~~is~i~l~Q~~~~lp~~iR~n~~y~i 153 (241)
T PF04665_consen 90 KSPQKKNNPRFLIILDDLGD---K-------KLKSKILRQFFNN--G----RHYNISIIFLSQSYFHLPPNIRSNIDYFI 153 (241)
T ss_pred hhcccCCCCCeEEEEeCCCC---c-------hhhhHHHHHHHhc--c----cccceEEEEEeeecccCCHHHhhcceEEE
Confidence 1111 2367999999742 1 0112233444431 1 12357788888888999999877666555
Q ss_pred cccCCCHHHHHHHHHH
Q 001746 895 YVDLPDAENRMKILRI 910 (1018)
Q Consensus 895 ~V~lPd~eeR~eILk~ 910 (1018)
.+. -+..+...|++.
T Consensus 154 ~~~-~s~~dl~~i~~~ 168 (241)
T PF04665_consen 154 IFN-NSKRDLENIYRN 168 (241)
T ss_pred Eec-CcHHHHHHHHHh
Confidence 554 355555555544
No 428
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.99 E-value=0.055 Score=65.09 Aligned_cols=77 Identities=23% Similarity=0.239 Sum_probs=55.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhh----------------------------hhHH
Q 001746 761 LRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWF----------------------------GDAE 809 (1018)
Q Consensus 761 ~~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~----------------------------ge~e 809 (1018)
+.+...+||.||||+|||+|+..++.+. |-+.++++..+-..... ...+
T Consensus 260 ~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~ 339 (484)
T TIGR02655 260 FFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLE 339 (484)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChH
Confidence 5666779999999999999999998765 55666665433211100 0125
Q ss_pred HHHHHHHHHHHhcCCeEEEecchhhhhh
Q 001746 810 KLTKALFSFASKLAPVIIFVDEVDSLLG 837 (1018)
Q Consensus 810 k~I~~lF~~A~k~~PsIIfIDEID~L~~ 837 (1018)
..+..+.+......|.+|+||-+..+..
T Consensus 340 ~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 340 DHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 5667777777788899999999998754
No 429
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.99 E-value=0.2 Score=59.42 Aligned_cols=73 Identities=21% Similarity=0.287 Sum_probs=47.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccccchh-------h------------h-hhHHHHHHHHHHH
Q 001746 763 PCKGILLFGPPGTGKTLLAKALATEA----GANFISITGSTLTSK-------W------------F-GDAEKLTKALFSF 818 (1018)
Q Consensus 763 p~~gVLL~GPPGTGKT~LArAIA~el----g~~fi~Is~seL~s~-------~------------~-ge~ek~I~~lF~~ 818 (1018)
++..+++.|++|+|||+++..+|..+ |..+..+++...-.. + . ..+..........
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~ 177 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEY 177 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHH
Confidence 45679999999999999998888764 556666666533211 0 0 0122334455555
Q ss_pred HHhcCCeEEEecchhhh
Q 001746 819 ASKLAPVIIFVDEVDSL 835 (1018)
Q Consensus 819 A~k~~PsIIfIDEID~L 835 (1018)
+......+|+||=..++
T Consensus 178 ~~~~~~DvVIIDTaGr~ 194 (428)
T TIGR00959 178 AKENGFDVVIVDTAGRL 194 (428)
T ss_pred HHhcCCCEEEEeCCCcc
Confidence 65566778999877554
No 430
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.99 E-value=0.025 Score=58.53 Aligned_cols=75 Identities=28% Similarity=0.399 Sum_probs=42.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh--C-----------CcEEEEeccccchh----h---hhh----------------
Q 001746 764 CKGILLFGPPGTGKTLLAKALATEA--G-----------ANFISITGSTLTSK----W---FGD---------------- 807 (1018)
Q Consensus 764 ~~gVLL~GPPGTGKT~LArAIA~el--g-----------~~fi~Is~seL~s~----~---~ge---------------- 807 (1018)
..-++|+||||+|||+++..+|..+ | .+++.++...-... + .+.
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~ 111 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNWG 111 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E-
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeeccccc
Confidence 3448999999999999999988765 2 35666654322100 0 000
Q ss_pred -------------HHHHHHHHHHHHHh-cCCeEEEecchhhhhhc
Q 001746 808 -------------AEKLTKALFSFASK-LAPVIIFVDEVDSLLGA 838 (1018)
Q Consensus 808 -------------~ek~I~~lF~~A~k-~~PsIIfIDEID~L~~~ 838 (1018)
....+..+...+.. ..|.+|+||.+..+...
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 112 CIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred cceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 11223445555566 57899999999999865
No 431
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.99 E-value=0.051 Score=61.30 Aligned_cols=39 Identities=26% Similarity=0.377 Sum_probs=30.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccc
Q 001746 761 LRPCKGILLFGPPGTGKTLLAKALATEA---------GANFISITGST 799 (1018)
Q Consensus 761 ~~p~~gVLL~GPPGTGKT~LArAIA~el---------g~~fi~Is~se 799 (1018)
+....-++|+||||+|||.|+..+|... +...++++..+
T Consensus 92 i~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 92 IETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 4455668999999999999999998764 23677777655
No 432
>PF13479 AAA_24: AAA domain
Probab=95.98 E-value=0.032 Score=59.76 Aligned_cols=67 Identities=25% Similarity=0.291 Sum_probs=37.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc-EEEEecccc-chhh-----h-hhHHHHHHHHHHHH--HhcCCeEEEecchhh
Q 001746 765 KGILLFGPPGTGKTLLAKALATEAGAN-FISITGSTL-TSKW-----F-GDAEKLTKALFSFA--SKLAPVIIFVDEVDS 834 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~elg~~-fi~Is~seL-~s~~-----~-ge~ek~I~~lF~~A--~k~~PsIIfIDEID~ 834 (1018)
..+||||+||+|||++|..+ +-+ |+.+..... +..+ . -..-..+.+.+..+ ....-.+|+||.++.
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~----~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis~ 79 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL----PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSISW 79 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC----CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHHH
Confidence 46999999999999999888 322 223322211 0000 0 01122233333322 234557999998887
Q ss_pred h
Q 001746 835 L 835 (1018)
Q Consensus 835 L 835 (1018)
+
T Consensus 80 ~ 80 (213)
T PF13479_consen 80 L 80 (213)
T ss_pred H
Confidence 6
No 433
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.96 E-value=0.03 Score=59.83 Aligned_cols=22 Identities=59% Similarity=0.837 Sum_probs=21.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHh
Q 001746 767 ILLFGPPGTGKTLLAKALATEA 788 (1018)
Q Consensus 767 VLL~GPPGTGKT~LArAIA~el 788 (1018)
|+|+|+||+|||++|+.+|+++
T Consensus 4 iIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHH
Confidence 8899999999999999999998
No 434
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.95 E-value=0.0088 Score=67.53 Aligned_cols=69 Identities=33% Similarity=0.393 Sum_probs=46.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEec-cccc-------hhhhhhHHHHHHHHHHHHHhcCCeEEEecc
Q 001746 765 KGILLFGPPGTGKTLLAKALATEA-----GANFISITG-STLT-------SKWFGDAEKLTKALFSFASKLAPVIIFVDE 831 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~el-----g~~fi~Is~-seL~-------s~~~ge~ek~I~~lF~~A~k~~PsIIfIDE 831 (1018)
.++|+.||+|+|||+++++++... +..++.+.- .++. .-...........++..+.+..|..|++.|
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivGE 212 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVGE 212 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 579999999999999999999886 233433321 1111 100111111456677778889999999999
Q ss_pred hh
Q 001746 832 VD 833 (1018)
Q Consensus 832 ID 833 (1018)
+-
T Consensus 213 iR 214 (299)
T TIGR02782 213 VR 214 (299)
T ss_pred cC
Confidence 94
No 435
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.95 E-value=0.013 Score=67.27 Aligned_cols=23 Identities=57% Similarity=0.677 Sum_probs=21.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001746 766 GILLFGPPGTGKTLLAKALATEA 788 (1018)
Q Consensus 766 gVLL~GPPGTGKT~LArAIA~el 788 (1018)
-+++.|.||||||.||-.+|.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 48999999999999999999988
No 436
>PRK13946 shikimate kinase; Provisional
Probab=95.94 E-value=0.0064 Score=63.40 Aligned_cols=32 Identities=31% Similarity=0.561 Sum_probs=29.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001746 765 KGILLFGPPGTGKTLLAKALATEAGANFISIT 796 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is 796 (1018)
+.|+|.|++|+|||++++.+|+.+|++|+..+
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 56999999999999999999999999998765
No 437
>PLN02200 adenylate kinase family protein
Probab=95.94 E-value=0.008 Score=65.52 Aligned_cols=38 Identities=18% Similarity=0.311 Sum_probs=30.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccch
Q 001746 763 PCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS 802 (1018)
Q Consensus 763 p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~s 802 (1018)
.+.-|+|.||||+|||++|+.||.++|++. +++.+++.
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g~~h--is~gdllR 79 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFGFKH--LSAGDLLR 79 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCeE--EEccHHHH
Confidence 445689999999999999999999998754 56666554
No 438
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.93 E-value=0.063 Score=56.10 Aligned_cols=20 Identities=20% Similarity=0.459 Sum_probs=18.5
Q ss_pred EEEEcCCCChHHHHHHHHHH
Q 001746 767 ILLFGPPGTGKTLLAKALAT 786 (1018)
Q Consensus 767 VLL~GPPGTGKT~LArAIA~ 786 (1018)
++|+||.|+|||++.+.++.
T Consensus 2 ~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999999983
No 439
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.91 E-value=0.0066 Score=64.54 Aligned_cols=29 Identities=45% Similarity=0.752 Sum_probs=26.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001746 767 ILLFGPPGTGKTLLAKALATEAGANFISI 795 (1018)
Q Consensus 767 VLL~GPPGTGKT~LArAIA~elg~~fi~I 795 (1018)
|+|.||||+|||++|+.||..+|++.+.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 89999999999999999999998877653
No 440
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=95.91 E-value=0.017 Score=70.62 Aligned_cols=95 Identities=21% Similarity=0.234 Sum_probs=61.4
Q ss_pred CcccccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecc-cc
Q 001746 725 GVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAG---ANFISITGS-TL 800 (1018)
Q Consensus 725 ~vtfdDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg---~~fi~Is~s-eL 800 (1018)
..+++++|-.....+.+.+++.. +...||++||+|+|||++..++.++++ .+++.+--+ ++
T Consensus 292 ~~~l~~lg~~~~~~~~l~~~~~~---------------~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~ 356 (564)
T TIGR02538 292 QLDIDKLGFEPDQKALFLEAIHK---------------PQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEI 356 (564)
T ss_pred cCCHHHcCCCHHHHHHHHHHHHh---------------cCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCcee
Confidence 35688888888888888877633 223489999999999999988888774 344443211 11
Q ss_pred c-----hhhhh-hHHHHHHHHHHHHHhcCCeEEEecchhh
Q 001746 801 T-----SKWFG-DAEKLTKALFSFASKLAPVIIFVDEVDS 834 (1018)
Q Consensus 801 ~-----s~~~g-e~ek~I~~lF~~A~k~~PsIIfIDEID~ 834 (1018)
. ...+. ............+-+..|.||+|.||-.
T Consensus 357 ~~~~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiRd 396 (564)
T TIGR02538 357 NLPGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIRD 396 (564)
T ss_pred cCCCceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCCC
Confidence 1 00001 1112244455566778999999999954
No 441
>PRK02496 adk adenylate kinase; Provisional
Probab=95.91 E-value=0.0074 Score=62.52 Aligned_cols=30 Identities=37% Similarity=0.579 Sum_probs=26.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001746 766 GILLFGPPGTGKTLLAKALATEAGANFISI 795 (1018)
Q Consensus 766 gVLL~GPPGTGKT~LArAIA~elg~~fi~I 795 (1018)
.++|.||||+|||++|+.||..++++.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 489999999999999999999999876654
No 442
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=95.90 E-value=0.012 Score=66.77 Aligned_cols=36 Identities=31% Similarity=0.531 Sum_probs=32.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001746 761 LRPCKGILLFGPPGTGKTLLAKALATEAGANFISIT 796 (1018)
Q Consensus 761 ~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is 796 (1018)
..+...|+|.|+||+|||++++.+|..+|++|+.++
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 566778999999999999999999999999999543
No 443
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.86 E-value=0.13 Score=58.73 Aligned_cols=36 Identities=31% Similarity=0.347 Sum_probs=28.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 001746 763 PCKGILLFGPPGTGKTLLAKALATEA---GANFISITGS 798 (1018)
Q Consensus 763 p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~s 798 (1018)
++.-++|.||+|+|||+++..+|..+ +..+.-+++.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D 151 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGD 151 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 45668899999999999999999877 4455555543
No 444
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.86 E-value=0.0084 Score=62.09 Aligned_cols=33 Identities=30% Similarity=0.601 Sum_probs=29.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 001746 765 KGILLFGPPGTGKTLLAKALATEAGANFISITG 797 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~ 797 (1018)
..|+|.||+|+|||++++.+|..++.+++..+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 469999999999999999999999999887653
No 445
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.85 E-value=0.12 Score=59.02 Aligned_cols=35 Identities=17% Similarity=0.319 Sum_probs=31.6
Q ss_pred CCceeeccCCchhHHHHHHHHHHHHhhCCcEEeeecC
Q 001746 221 SGRILLRSVPGTELYRERLIRALARELQVPLLVLDSS 257 (1018)
Q Consensus 221 ~~riLL~~~~gsE~yqe~L~kALA~~~~a~ll~~ds~ 257 (1018)
++.|||.|||| ..+.+||++||+.++.++..+.-+
T Consensus 64 ~~~ilL~G~pG--tGKTtla~~lA~~l~~~~~rV~~~ 98 (327)
T TIGR01650 64 DRRVMVQGYHG--TGKSTHIEQIAARLNWPCVRVNLD 98 (327)
T ss_pred CCcEEEEeCCC--ChHHHHHHHHHHHHCCCeEEEEec
Confidence 46799999999 999999999999999999877654
No 446
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.84 E-value=0.0074 Score=62.14 Aligned_cols=28 Identities=43% Similarity=0.710 Sum_probs=26.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001746 767 ILLFGPPGTGKTLLAKALATEAGANFIS 794 (1018)
Q Consensus 767 VLL~GPPGTGKT~LArAIA~elg~~fi~ 794 (1018)
|-+.||||||||++|+.||.++|.++++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 6789999999999999999999999986
No 447
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=95.84 E-value=0.027 Score=72.94 Aligned_cols=141 Identities=21% Similarity=0.281 Sum_probs=80.8
Q ss_pred CCCceEEEEcCCCChHHHH-HHHHHHHhCCcEEEEeccccchhhhhhHHHHHHHHHHHHHhc--------------CCeE
Q 001746 762 RPCKGILLFGPPGTGKTLL-AKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKL--------------APVI 826 (1018)
Q Consensus 762 ~p~~gVLL~GPPGTGKT~L-ArAIA~elg~~fi~Is~seL~s~~~ge~ek~I~~lF~~A~k~--------------~PsI 826 (1018)
...++++++||||+|||+| ..++-+++-..++.++-+.-.. ++..+..+-+..... +--|
T Consensus 1492 nt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~-----T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lV 1566 (3164)
T COG5245 1492 NTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTM-----TPSKLSVLERETEYYPNTGVVRLYPKPVVKDLV 1566 (3164)
T ss_pred hccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccC-----CHHHHHHHHhhceeeccCCeEEEccCcchhheE
Confidence 3457899999999999996 4567777767777666543211 111222221111111 1249
Q ss_pred EEecchhhhhhccCCCcch---HHHHHHHHH------HHhhhccccccCCCcEEEEEecCCCCCCc-----HHHHhccCc
Q 001746 827 IFVDEVDSLLGARGGAFEH---EATRRMRNE------FMSAWDGLRSKESQKILILGATNRPFDLD-----DAVIRRLPR 892 (1018)
Q Consensus 827 IfIDEID~L~~~r~~~~~~---e~~~~il~~------LL~~Ldgl~~~~~~~VlVIaTTN~p~~LD-----~aLlrRFd~ 892 (1018)
||.|||. | +....-..+ -..+.++.. +-..|-.+ .+++|.|++|.+.+.- +.++|+- .
T Consensus 1567 LFcDeIn-L-p~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvTI-----~~i~l~Gacnp~td~gRv~~~eRf~r~~-v 1638 (3164)
T COG5245 1567 LFCDEIN-L-PYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVTI-----CGIILYGACNPGTDEGRVKYYERFIRKP-V 1638 (3164)
T ss_pred EEeeccC-C-ccccccCCCceEEeeHHHHHhcccccchhhhHhhh-----cceEEEccCCCCCCcccCccHHHHhcCc-e
Confidence 9999998 3 222111101 111222211 11222111 4689999999987643 4555543 4
Q ss_pred cccccCCCHHHHHHHHHHHHhcc
Q 001746 893 RIYVDLPDAENRMKILRIFLAHE 915 (1018)
Q Consensus 893 ~I~V~lPd~eeR~eILk~~L~~~ 915 (1018)
.+.+..|.......|..+++...
T Consensus 1639 ~vf~~ype~~SL~~Iyea~l~~s 1661 (3164)
T COG5245 1639 FVFCCYPELASLRNIYEAVLMGS 1661 (3164)
T ss_pred EEEecCcchhhHHHHHHHHHHHH
Confidence 57788999999999988887643
No 448
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=95.83 E-value=0.06 Score=56.85 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=20.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 001746 765 KGILLFGPPGTGKTLLAKALAT 786 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~ 786 (1018)
+.++|.||.|+|||+|.+.|+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~~ 50 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLGL 50 (200)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 4599999999999999999983
No 449
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.83 E-value=0.0077 Score=64.23 Aligned_cols=34 Identities=38% Similarity=0.634 Sum_probs=28.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 001746 766 GILLFGPPGTGKTLLAKALATEAGANFISITGSTLT 801 (1018)
Q Consensus 766 gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~ 801 (1018)
.|+++||||+|||++|+.||..++++.+. ..+++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is--~~dl~ 35 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIS--TGDML 35 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEE--CCccH
Confidence 38999999999999999999999976665 44443
No 450
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.83 E-value=0.051 Score=68.35 Aligned_cols=77 Identities=22% Similarity=0.213 Sum_probs=50.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHH---hCCcEEEEeccccch-h---------------hhhhHHHHHHHHHHHHHh
Q 001746 761 LRPCKGILLFGPPGTGKTLLAKALATE---AGANFISITGSTLTS-K---------------WFGDAEKLTKALFSFASK 821 (1018)
Q Consensus 761 ~~p~~gVLL~GPPGTGKT~LArAIA~e---lg~~fi~Is~seL~s-~---------------~~ge~ek~I~~lF~~A~k 821 (1018)
+.+...++|+||||||||+|+..++.. .|-..++++...-+. . .....+..+..+-...+.
T Consensus 57 ip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~ 136 (790)
T PRK09519 57 LPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRS 136 (790)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhc
Confidence 566677999999999999999765543 366667766544211 0 011223333333333445
Q ss_pred cCCeEEEecchhhhhh
Q 001746 822 LAPVIIFVDEVDSLLG 837 (1018)
Q Consensus 822 ~~PsIIfIDEID~L~~ 837 (1018)
..+.+|+||-|..+..
T Consensus 137 ~~~~LVVIDSI~aL~~ 152 (790)
T PRK09519 137 GALDIVVIDSVAALVP 152 (790)
T ss_pred CCCeEEEEcchhhhcc
Confidence 6799999999999985
No 451
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.81 E-value=0.079 Score=56.01 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=20.2
Q ss_pred CceEEEEcCCCChHHHHHHHHH
Q 001746 764 CKGILLFGPPGTGKTLLAKALA 785 (1018)
Q Consensus 764 ~~gVLL~GPPGTGKT~LArAIA 785 (1018)
..-++|+||.|+|||++.+.|+
T Consensus 29 ~~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 29 GRLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred CeEEEEECCCCCccHHHHHHHH
Confidence 3569999999999999999998
No 452
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.063 Score=62.52 Aligned_cols=98 Identities=21% Similarity=0.289 Sum_probs=68.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh--CCcEEEEeccccchhhh------h--------hHHHHHHHHHHHHHhcCC
Q 001746 761 LRPCKGILLFGPPGTGKTLLAKALATEA--GANFISITGSTLTSKWF------G--------DAEKLTKALFSFASKLAP 824 (1018)
Q Consensus 761 ~~p~~gVLL~GPPGTGKT~LArAIA~el--g~~fi~Is~seL~s~~~------g--------e~ek~I~~lF~~A~k~~P 824 (1018)
+-|..-+||-|.||.|||+|.-.+|..+ ..+++++++.+-...+- + -.+.++..+.......+|
T Consensus 90 ~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p 169 (456)
T COG1066 90 LVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKP 169 (456)
T ss_pred cccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCC
Confidence 4566679999999999999998888776 23788988766433221 1 246678888888889999
Q ss_pred eEEEecchhhhhhccCC--CcchHHHHHHHHHHHhh
Q 001746 825 VIIFVDEVDSLLGARGG--AFEHEATRRMRNEFMSA 858 (1018)
Q Consensus 825 sIIfIDEID~L~~~r~~--~~~~e~~~~il~~LL~~ 858 (1018)
.+++||-|..+....-. ++.-...+....+|+..
T Consensus 170 ~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~ 205 (456)
T COG1066 170 DLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRL 205 (456)
T ss_pred CEEEEeccceeecccccCCCCcHHHHHHHHHHHHHH
Confidence 99999999999765422 22233345555555543
No 453
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.78 E-value=0.0081 Score=70.45 Aligned_cols=67 Identities=13% Similarity=0.269 Sum_probs=54.0
Q ss_pred hhhHHHHHHhhhhcccCccchhhcccccCCCCCceeeccCCchhHHHHHHHHHHHHhhCCcEEeeecCCCC
Q 001746 190 ENTKSLLVECVGSHLKHKKFTATFGARLTSSSGRILLRSVPGTELYRERLIRALARELQVPLLVLDSSVLA 260 (1018)
Q Consensus 190 e~tk~~L~~~~~~hl~~~~~~~~~~~~l~~~~~riLL~~~~gsE~yqe~L~kALA~~~~a~ll~~ds~~l~ 260 (1018)
++.|.+|.-|+|.|.++..+. .-.++ ....+.|||.|||| ..+.+||||||+.++++++-+|.+.+.
T Consensus 18 ~eAkk~lsvAl~n~~~r~~~~-~~~~~-e~~p~~ILLiGppG--~GKT~lAraLA~~l~~~fi~vdat~~~ 84 (441)
T TIGR00390 18 DNAKKSVAIALRNRYRRSQLN-EELKD-EVTPKNILMIGPTG--VGKTEIARRLAKLANAPFIKVEATKFT 84 (441)
T ss_pred HHHHHHHHHHHHhhhhhhccc-ccccc-ccCCceEEEECCCC--CCHHHHHHHHHHHhCCeEEEeecceee
Confidence 899999999999997776542 11111 12347899999999 999999999999999999999997553
No 454
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.78 E-value=0.054 Score=61.69 Aligned_cols=78 Identities=23% Similarity=0.252 Sum_probs=47.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccccch-hh-------hh----------------h
Q 001746 761 LRPCKGILLFGPPGTGKTLLAKALATEA---------GANFISITGSTLTS-KW-------FG----------------D 807 (1018)
Q Consensus 761 ~~p~~gVLL~GPPGTGKT~LArAIA~el---------g~~fi~Is~seL~s-~~-------~g----------------e 807 (1018)
+.+..-++|+||||+|||.|+..+|-.. +...++++...-+. .. ++ .
T Consensus 93 i~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~i~~~~~~~ 172 (313)
T TIGR02238 93 IESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYARAYT 172 (313)
T ss_pred CcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCcEEEecCCC
Confidence 5566678999999999999998877432 34677777544110 00 00 1
Q ss_pred HH---HHHHHHHHHHHhcCCeEEEecchhhhhhc
Q 001746 808 AE---KLTKALFSFASKLAPVIIFVDEVDSLLGA 838 (1018)
Q Consensus 808 ~e---k~I~~lF~~A~k~~PsIIfIDEID~L~~~ 838 (1018)
.+ ..+..+-.......+.+|+||-|-.++..
T Consensus 173 ~e~~~~~l~~l~~~i~~~~~~LvVIDSisal~r~ 206 (313)
T TIGR02238 173 SEHQMELLDYLAAKFSEEPFRLLIVDSIMALFRV 206 (313)
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEEcchHhhhh
Confidence 11 12222222333457889999999988643
No 455
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=95.77 E-value=0.11 Score=57.06 Aligned_cols=146 Identities=10% Similarity=0.010 Sum_probs=92.9
Q ss_pred ceEEEEcCCC-ChHHHHHHHHHHHhCC---------cEEEEeccccchhhhh-hHHHHHHHHHHHH----HhcCCeEEEe
Q 001746 765 KGILLFGPPG-TGKTLLAKALATEAGA---------NFISITGSTLTSKWFG-DAEKLTKALFSFA----SKLAPVIIFV 829 (1018)
Q Consensus 765 ~gVLL~GPPG-TGKT~LArAIA~elg~---------~fi~Is~seL~s~~~g-e~ek~I~~lF~~A----~k~~PsIIfI 829 (1018)
...||.|..+ +||..++.-++..+-. .+..+.+..-..+... -.-..++++-..+ .....-|++|
T Consensus 16 hAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViII 95 (263)
T PRK06581 16 NSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAII 95 (263)
T ss_pred heeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEEEE
Confidence 5699999998 9999999888877632 1333322110000000 0123344443333 2334569999
Q ss_pred cchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHhccCccccccCCCHHHHHHHHH
Q 001746 830 DEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILR 909 (1018)
Q Consensus 830 DEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~~I~V~lPd~eeR~eILk 909 (1018)
+++|.|.. ...|.||..|+.- ...+++|..|..+..+.+.+++|+ ..+.++.|+...-.++..
T Consensus 96 ~~ae~mt~------------~AANALLKtLEEP----P~~t~fILit~~~~~LLpTIrSRC-q~i~~~~p~~~~~~e~~~ 158 (263)
T PRK06581 96 YSAELMNL------------NAANSCLKILEDA----PKNSYIFLITSRAASIISTIRSRC-FKINVRSSILHAYNELYS 158 (263)
T ss_pred echHHhCH------------HHHHHHHHhhcCC----CCCeEEEEEeCChhhCchhHhhce-EEEeCCCCCHHHHHHHHH
Confidence 99999842 2356777777652 345777777888999999999999 678899999888777777
Q ss_pred HHHhccCCCCcccHHHHHHH
Q 001746 910 IFLAHESLESGFQFNELANA 929 (1018)
Q Consensus 910 ~~L~~~~l~~dvdl~~LA~~ 929 (1018)
..+..... +..++-|.+.
T Consensus 159 ~~~~p~~~--~~~l~~i~~~ 176 (263)
T PRK06581 159 QFIQPIAD--NKTLDFINRF 176 (263)
T ss_pred Hhcccccc--cHHHHHHHHH
Confidence 76654432 3335555554
No 456
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.76 E-value=0.025 Score=61.78 Aligned_cols=34 Identities=32% Similarity=0.556 Sum_probs=28.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 001746 767 ILLFGPPGTGKTLLAKALATEA---GANFISITGSTL 800 (1018)
Q Consensus 767 VLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL 800 (1018)
|+|.|+||+|||++|++++..+ +..++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 7899999999999999999987 566777765444
No 457
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.75 E-value=0.02 Score=61.41 Aligned_cols=23 Identities=52% Similarity=0.683 Sum_probs=18.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001746 766 GILLFGPPGTGKTLLAKALATEA 788 (1018)
Q Consensus 766 gVLL~GPPGTGKT~LArAIA~el 788 (1018)
-+.+.||+|||||+||-+.|.++
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 48899999999999999999766
No 458
>PRK04040 adenylate kinase; Provisional
Probab=95.74 E-value=0.01 Score=62.49 Aligned_cols=31 Identities=23% Similarity=0.385 Sum_probs=26.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh--CCcEEE
Q 001746 764 CKGILLFGPPGTGKTLLAKALATEA--GANFIS 794 (1018)
Q Consensus 764 ~~gVLL~GPPGTGKT~LArAIA~el--g~~fi~ 794 (1018)
++-|+|+|+||+|||++++.++..+ +..++.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~ 34 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVN 34 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEe
Confidence 3569999999999999999999999 666643
No 459
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.73 E-value=0.073 Score=61.40 Aligned_cols=78 Identities=19% Similarity=0.177 Sum_probs=47.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccccch-h--------h------------------
Q 001746 761 LRPCKGILLFGPPGTGKTLLAKALATEA---------GANFISITGSTLTS-K--------W------------------ 804 (1018)
Q Consensus 761 ~~p~~gVLL~GPPGTGKT~LArAIA~el---------g~~fi~Is~seL~s-~--------~------------------ 804 (1018)
+....-..|+||||||||.|+..+|-.. +..+++++...-+. . +
T Consensus 123 i~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~~ 202 (344)
T PLN03187 123 IETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAYT 202 (344)
T ss_pred CCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCCC
Confidence 4555668899999999999999887432 24667776643100 0 0
Q ss_pred hhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhc
Q 001746 805 FGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGA 838 (1018)
Q Consensus 805 ~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~ 838 (1018)
.......+..+-.......+.+|+||-|-.++..
T Consensus 203 ~e~~~~~l~~l~~~i~~~~~~LvVIDSital~r~ 236 (344)
T PLN03187 203 YEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRV 236 (344)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHhhhc
Confidence 0001112222222334456899999999988654
No 460
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.72 E-value=0.0079 Score=57.44 Aligned_cols=22 Identities=50% Similarity=0.670 Sum_probs=21.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHh
Q 001746 767 ILLFGPPGTGKTLLAKALATEA 788 (1018)
Q Consensus 767 VLL~GPPGTGKT~LArAIA~el 788 (1018)
|+|.|+||+|||++|+.|+.++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 461
>PRK14527 adenylate kinase; Provisional
Probab=95.71 E-value=0.0086 Score=62.66 Aligned_cols=31 Identities=42% Similarity=0.672 Sum_probs=27.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001746 764 CKGILLFGPPGTGKTLLAKALATEAGANFIS 794 (1018)
Q Consensus 764 ~~gVLL~GPPGTGKT~LArAIA~elg~~fi~ 794 (1018)
+.-|++.||||+|||++|+.+|..+++..+.
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~~~~~is 36 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQELGLKKLS 36 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 4569999999999999999999999876554
No 462
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=95.71 E-value=0.033 Score=59.01 Aligned_cols=51 Identities=18% Similarity=0.185 Sum_probs=36.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccchhhhhh---HHHHHHHHHHH
Q 001746 766 GILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGD---AEKLTKALFSF 818 (1018)
Q Consensus 766 gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~s~~~ge---~ek~I~~lF~~ 818 (1018)
-|.|+|++|+|||++++.++..+|++++ ++..+....... .-..+...|..
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i--~~D~~~~~~~~~~~~~~~~l~~~fg~ 56 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPIL--DADIYAREALAPGSPILKAILQRYGN 56 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEe--eCcHHHHHHHhcCchHHHHHHHHhCH
Confidence 4889999999999999999998898887 455554433322 23445555543
No 463
>PRK06696 uridine kinase; Validated
Probab=95.68 E-value=0.023 Score=61.09 Aligned_cols=38 Identities=26% Similarity=0.287 Sum_probs=32.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccc
Q 001746 764 CKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLT 801 (1018)
Q Consensus 764 ~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~ 801 (1018)
+.-|.|.|++|+|||+||+.|+..+ |.+++.+++.++.
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 4568899999999999999999998 6778887776664
No 464
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.67 E-value=0.085 Score=63.72 Aligned_cols=77 Identities=22% Similarity=0.247 Sum_probs=49.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEeccccchh--------------hh-----------------
Q 001746 761 LRPCKGILLFGPPGTGKTLLAKALATEA----GANFISITGSTLTSK--------------WF----------------- 805 (1018)
Q Consensus 761 ~~p~~gVLL~GPPGTGKT~LArAIA~el----g~~fi~Is~seL~s~--------------~~----------------- 805 (1018)
+.+...+||+|+||+|||+|+..++.+. |-+.++++..+-... +.
T Consensus 28 ~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~g~l~~~~~~~~~~~~ 107 (509)
T PRK09302 28 LPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQKLIDEGKLFILDASPDPSEQ 107 (509)
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCeEEEEecCcccccc
Confidence 5566779999999999999999876542 556655544321100 00
Q ss_pred -----hhHHHHHHHHHHHHHhcCCeEEEecchhhhhh
Q 001746 806 -----GDAEKLTKALFSFASKLAPVIIFVDEVDSLLG 837 (1018)
Q Consensus 806 -----ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~ 837 (1018)
.+.+..+..+-..+....|..|+||.+..+..
T Consensus 108 ~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~ 144 (509)
T PRK09302 108 EEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFS 144 (509)
T ss_pred cccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHh
Confidence 01123344455556677899999999988753
No 465
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.66 E-value=0.039 Score=64.61 Aligned_cols=98 Identities=17% Similarity=0.304 Sum_probs=64.6
Q ss_pred CCeEEEEcCchhhhhhccCcchHHHHHHHHHHHHhcCCCCEEEEeeccCCCCCccccccccccccccccccCCCCchhhh
Q 001746 484 QPLIVYFPDSSLWLSRAVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPNFGRLAKLPLPLQRL 563 (1018)
Q Consensus 484 ~p~Iiff~did~~~~~s~~~~~~~~~~s~~~~~l~~l~g~v~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 563 (1018)
++-+|+||||+.+... +..++.++.+|..+.+. |..+||+++..+. +
T Consensus 199 ~~dlLiiDDi~~l~~~---~~~~~~l~~~~n~~~~~--~~~iiits~~~p~----~------------------------ 245 (405)
T TIGR00362 199 SVDLLLIDDIQFLAGK---ERTQEEFFHTFNALHEN--GKQIVLTSDRPPK----E------------------------ 245 (405)
T ss_pred hCCEEEEehhhhhcCC---HHHHHHHHHHHHHHHHC--CCCEEEecCCCHH----H------------------------
Confidence 3679999999976432 12345677777776553 4556664443322 0
Q ss_pred hcccccCCCcchHHHHhccc--cEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001746 564 TEGLKATKRSDDNEIYNLFT--NVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHK 622 (1018)
Q Consensus 564 vIGmTnR~d~iD~aL~rrFe--~~ieI~LPdeegRl~Il~iht~~~~~~~~~~~~v~~l~~ 622 (1018)
.+.+++.|..||. ..++|++||.+.|.+|++...+. ......++-++.++.
T Consensus 246 -------l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~-~~~~l~~e~l~~ia~ 298 (405)
T TIGR00362 246 -------LPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEE-EGLELPDEVLEFIAK 298 (405)
T ss_pred -------HhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHH-cCCCCCHHHHHHHHH
Confidence 1235788888997 47999999999999999987554 344445555666654
No 466
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.62 E-value=0.014 Score=66.78 Aligned_cols=71 Identities=27% Similarity=0.335 Sum_probs=47.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC--CcEEEE-eccccch-----------hh--hhhHHHHHHHHHHHHHhcCCeEE
Q 001746 764 CKGILLFGPPGTGKTLLAKALATEAG--ANFISI-TGSTLTS-----------KW--FGDAEKLTKALFSFASKLAPVII 827 (1018)
Q Consensus 764 ~~gVLL~GPPGTGKT~LArAIA~elg--~~fi~I-s~seL~s-----------~~--~ge~ek~I~~lF~~A~k~~PsII 827 (1018)
..+||+.|++|+|||+++++++.+.. ..++.+ +..++.- .. .+...-....+...+.+..|.+|
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~I 239 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDRI 239 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCeE
Confidence 36799999999999999999999874 233333 1112210 00 11122235667778889999999
Q ss_pred Eecchhh
Q 001746 828 FVDEVDS 834 (1018)
Q Consensus 828 fIDEID~ 834 (1018)
++.|+-.
T Consensus 240 ivGEiR~ 246 (332)
T PRK13900 240 IVGELRG 246 (332)
T ss_pred EEEecCC
Confidence 9999953
No 467
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.61 E-value=0.02 Score=59.78 Aligned_cols=70 Identities=34% Similarity=0.451 Sum_probs=44.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecc-ccch---hh----------hhhHHHHHHHHHHHHHhcCCeEE
Q 001746 764 CKGILLFGPPGTGKTLLAKALATEAG--ANFISITGS-TLTS---KW----------FGDAEKLTKALFSFASKLAPVII 827 (1018)
Q Consensus 764 ~~gVLL~GPPGTGKT~LArAIA~elg--~~fi~Is~s-eL~s---~~----------~ge~ek~I~~lF~~A~k~~PsII 827 (1018)
...++|.||+|+|||+++++++.... ...+.+... ++.. .+ .+.....+..++..+.+..|.+|
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i 104 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRI 104 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEE
Confidence 45699999999999999999998763 222322111 1100 00 01112335566667778889999
Q ss_pred Eecchh
Q 001746 828 FVDEVD 833 (1018)
Q Consensus 828 fIDEID 833 (1018)
++.|+-
T Consensus 105 ~igEir 110 (186)
T cd01130 105 IVGEVR 110 (186)
T ss_pred EEEccC
Confidence 999994
No 468
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=95.59 E-value=0.035 Score=58.64 Aligned_cols=67 Identities=28% Similarity=0.424 Sum_probs=42.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEeccccchhhh---h---------------hHHHHHHHHHHHHHhc
Q 001746 762 RPCKGILLFGPPGTGKTLLAKALATEA-GANFISITGSTLTSKWF---G---------------DAEKLTKALFSFASKL 822 (1018)
Q Consensus 762 ~p~~gVLL~GPPGTGKT~LArAIA~el-g~~fi~Is~seL~s~~~---g---------------e~ek~I~~lF~~A~k~ 822 (1018)
..|.-+++.|+||+|||+++..+...+ +-.++.++..++..... + +.......+...+...
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~a~~~ 92 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFHPDYDELLKADPDEASELTQKEASRLAEKLIEYAIEN 92 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 345678999999999999999999988 77888888877643321 1 1223445556666666
Q ss_pred CCeEEE
Q 001746 823 APVIIF 828 (1018)
Q Consensus 823 ~PsIIf 828 (1018)
...|||
T Consensus 93 ~~nii~ 98 (199)
T PF06414_consen 93 RYNIIF 98 (199)
T ss_dssp T--EEE
T ss_pred CCCEEE
Confidence 666664
No 469
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.56 E-value=0.026 Score=62.90 Aligned_cols=70 Identities=27% Similarity=0.372 Sum_probs=37.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccch---hh-hhhHHHHHHHHH----HHHHhcCCeEEEecchhhh
Q 001746 767 ILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTS---KW-FGDAEKLTKALF----SFASKLAPVIIFVDEVDSL 835 (1018)
Q Consensus 767 VLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~s---~~-~ge~ek~I~~lF----~~A~k~~PsIIfIDEID~L 835 (1018)
|+|+|.||+|||++|+.|+..+ +..++.++-..+.- .| ....++.++..+ ..+- ....||++|+...+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~l-s~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERAL-SKDTIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHH-TT-SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhh-ccCeEEEEeCCchH
Confidence 8999999999999999999876 56676666444321 11 122344444333 3332 23479999998776
Q ss_pred hh
Q 001746 836 LG 837 (1018)
Q Consensus 836 ~~ 837 (1018)
-+
T Consensus 83 Kg 84 (270)
T PF08433_consen 83 KG 84 (270)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 470
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.53 E-value=0.022 Score=64.89 Aligned_cols=70 Identities=26% Similarity=0.400 Sum_probs=46.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEe-ccccch------hhhhhHHHHHHHHHHHHHhcCCeEEEecc
Q 001746 764 CKGILLFGPPGTGKTLLAKALATEA-----GANFISIT-GSTLTS------KWFGDAEKLTKALFSFASKLAPVIIFVDE 831 (1018)
Q Consensus 764 ~~gVLL~GPPGTGKT~LArAIA~el-----g~~fi~Is-~seL~s------~~~ge~ek~I~~lF~~A~k~~PsIIfIDE 831 (1018)
..++++.|++|+|||+++++++.+. ...++.+. ..++.- .+....+-....++..+.+..|..|++.|
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGE 227 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGE 227 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 3679999999999999999999874 12233221 122210 00011122356777788889999999999
Q ss_pred hh
Q 001746 832 VD 833 (1018)
Q Consensus 832 ID 833 (1018)
+-
T Consensus 228 iR 229 (319)
T PRK13894 228 VR 229 (319)
T ss_pred cC
Confidence 94
No 471
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.53 E-value=0.2 Score=54.29 Aligned_cols=21 Identities=43% Similarity=0.506 Sum_probs=19.1
Q ss_pred EEEEcCCCChHHHHHHHHHHH
Q 001746 767 ILLFGPPGTGKTLLAKALATE 787 (1018)
Q Consensus 767 VLL~GPPGTGKT~LArAIA~e 787 (1018)
-+|.||||+|||+|+..+|..
T Consensus 4 ~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 589999999999999999864
No 472
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.52 E-value=0.042 Score=65.31 Aligned_cols=98 Identities=15% Similarity=0.272 Sum_probs=65.1
Q ss_pred CCeEEEEcCchhhhhhccCcchHHHHHHHHHHHHhcCCCCEEEEeeccCCCCCccccccccccccccccccCCCCchhhh
Q 001746 484 QPLIVYFPDSSLWLSRAVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPNFGRLAKLPLPLQRL 563 (1018)
Q Consensus 484 ~p~Iiff~did~~~~~s~~~~~~~~~~s~~~~~l~~l~g~v~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 563 (1018)
.+.+|++|||+.+... ...++.++.+|..+.+. |..+||++++.+. .
T Consensus 211 ~~dlLiiDDi~~l~~~---~~~~~~l~~~~n~l~~~--~~~iiits~~~p~-~--------------------------- 257 (450)
T PRK00149 211 SVDVLLIDDIQFLAGK---ERTQEEFFHTFNALHEA--GKQIVLTSDRPPK-E--------------------------- 257 (450)
T ss_pred cCCEEEEehhhhhcCC---HHHHHHHHHHHHHHHHC--CCcEEEECCCCHH-H---------------------------
Confidence 5779999999986432 12345777777776664 4556664433211 0
Q ss_pred hcccccCCCcchHHHHhccc--cEEEEcCCChHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001746 564 TEGLKATKRSDDNEIYNLFT--NVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHK 622 (1018)
Q Consensus 564 vIGmTnR~d~iD~aL~rrFe--~~ieI~LPdeegRl~Il~iht~~~~~~~~~~~~v~~l~~ 622 (1018)
.+.++++|..||. ..++|.+||.+.|.+|++..... ......++-++.++.
T Consensus 258 -------l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~-~~~~l~~e~l~~ia~ 310 (450)
T PRK00149 258 -------LPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEE-EGIDLPDEVLEFIAK 310 (450)
T ss_pred -------HHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHH-cCCCCCHHHHHHHHc
Confidence 0226788888996 58999999999999999988553 333445555555554
No 473
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.52 E-value=0.054 Score=68.18 Aligned_cols=101 Identities=21% Similarity=0.320 Sum_probs=55.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---C--CcEEEEecccc----chhhhhhHHHHHHHHHHHHH----------hcCCeE
Q 001746 766 GILLFGPPGTGKTLLAKALATEA---G--ANFISITGSTL----TSKWFGDAEKLTKALFSFAS----------KLAPVI 826 (1018)
Q Consensus 766 gVLL~GPPGTGKT~LArAIA~el---g--~~fi~Is~seL----~s~~~ge~ek~I~~lF~~A~----------k~~PsI 826 (1018)
-++|.|+||||||++++++...+ + .+++-+.+..- +....|.....+..++.... .....+
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~l 419 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCDL 419 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCCE
Confidence 48999999999999999997655 4 34443332211 11112222233444443210 134579
Q ss_pred EEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCc
Q 001746 827 IFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLD 883 (1018)
Q Consensus 827 IfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~LD 883 (1018)
|+|||+-.+- ..++..|+.. + +.+.+++++|=.+....+.
T Consensus 420 lIvDEaSMvd------------~~~~~~Ll~~---~--~~~~rlilvGD~~QLpsV~ 459 (720)
T TIGR01448 420 LIVDESSMMD------------TWLALSLLAA---L--PDHARLLLVGDTDQLPSVG 459 (720)
T ss_pred EEEeccccCC------------HHHHHHHHHh---C--CCCCEEEEECccccccCCC
Confidence 9999996652 1223344433 2 2345788888665544433
No 474
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.51 E-value=0.051 Score=55.66 Aligned_cols=33 Identities=39% Similarity=0.509 Sum_probs=27.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccc
Q 001746 767 ILLFGPPGTGKTLLAKALATEA---GANFISITGST 799 (1018)
Q Consensus 767 VLL~GPPGTGKT~LArAIA~el---g~~fi~Is~se 799 (1018)
+++.||||+|||+++..+|..+ +..+..+++..
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~ 38 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADT 38 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 7899999999999999998876 66676666553
No 475
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.49 E-value=0.012 Score=59.07 Aligned_cols=33 Identities=39% Similarity=0.603 Sum_probs=26.3
Q ss_pred EEcCCCChHHHHHHHHHHHhCCcEEEEeccccchh
Q 001746 769 LFGPPGTGKTLLAKALATEAGANFISITGSTLTSK 803 (1018)
Q Consensus 769 L~GPPGTGKT~LArAIA~elg~~fi~Is~seL~s~ 803 (1018)
|.||||+|||++|+.||.+.|+.. ++..+++..
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~--is~~~llr~ 33 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVH--ISVGDLLRE 33 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEE--EEHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcce--echHHHHHH
Confidence 689999999999999999998654 455555443
No 476
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=95.48 E-value=0.032 Score=66.77 Aligned_cols=155 Identities=22% Similarity=0.289 Sum_probs=88.1
Q ss_pred cccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEE---------EEecccc
Q 001746 730 DIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFI---------SITGSTL 800 (1018)
Q Consensus 730 DIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi---------~Is~seL 800 (1018)
.|.|-+.+|+.|.-++.--..+ ....+..++.--+|||.|.|-+.|+-|.+++.+-+...+- -+.+.-.
T Consensus 302 SI~GH~~vKkAillLLlGGvEk--~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVT 379 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLGGVEK--NLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVT 379 (818)
T ss_pred ccccHHHHHHHHHHHHhcccee--ccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEe
Confidence 3678999999987665332211 1223434555667999999999999999999876532221 1111111
Q ss_pred chhhhhhHHHHHHH-HHHHHHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhh--hccccccCCCcEEEEEecC
Q 001746 801 TSKWFGDAEKLTKA-LFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSA--WDGLRSKESQKILILGATN 877 (1018)
Q Consensus 801 ~s~~~ge~ek~I~~-lF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~--Ldgl~~~~~~~VlVIaTTN 877 (1018)
...- ..|+.+.. ..-.| ...|++|||+|.+..- +..+.-.++.+--.. --|+...-+.+.-|||++|
T Consensus 380 tD~e--TGERRLEAGAMVLA---DRGVVCIDEFDKMsDi-----DRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAAN 449 (818)
T KOG0479|consen 380 TDQE--TGERRLEAGAMVLA---DRGVVCIDEFDKMSDI-----DRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAAN 449 (818)
T ss_pred eccc--cchhhhhcCceEEc---cCceEEehhcccccch-----hHHHHHHHHhcceEEeEeccchhhhccceeeeeecC
Confidence 1111 12333221 11122 2379999999998422 222222222221111 1244444556788999998
Q ss_pred CCCC-------------CcHHHHhccCccccc
Q 001746 878 RPFD-------------LDDAVIRRLPRRIYV 896 (1018)
Q Consensus 878 ~p~~-------------LD~aLlrRFd~~I~V 896 (1018)
..+- |+..|++||+..+.+
T Consensus 450 PvyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv~ 481 (818)
T KOG0479|consen 450 PVYGQYDQSKTPMENIGLPDSLLSRFDLLFVV 481 (818)
T ss_pred ccccccCCCCChhhccCCcHHHHhhhcEEEEE
Confidence 6542 788999999865443
No 477
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.48 E-value=0.14 Score=61.99 Aligned_cols=77 Identities=23% Similarity=0.242 Sum_probs=50.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEeccccchhhh----------------------------hhHH
Q 001746 761 LRPCKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTLTSKWF----------------------------GDAE 809 (1018)
Q Consensus 761 ~~p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL~s~~~----------------------------ge~e 809 (1018)
+.....+||+|+||+|||+|+..++.+. |-+.++++..+-..... ...+
T Consensus 270 ~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~ 349 (509)
T PRK09302 270 FFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGLE 349 (509)
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCHH
Confidence 4455679999999999999999988654 66666665432111000 0112
Q ss_pred HHHHHHHHHHHhcCCeEEEecchhhhhh
Q 001746 810 KLTKALFSFASKLAPVIIFVDEVDSLLG 837 (1018)
Q Consensus 810 k~I~~lF~~A~k~~PsIIfIDEID~L~~ 837 (1018)
..+..+-.......+.+|+||-+..+..
T Consensus 350 ~~~~~i~~~i~~~~~~~vVIDslt~l~~ 377 (509)
T PRK09302 350 DHLIIIKREIEEFKPSRVAIDPLSALAR 377 (509)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 3344444455567889999999998864
No 478
>PRK04182 cytidylate kinase; Provisional
Probab=95.47 E-value=0.013 Score=59.63 Aligned_cols=29 Identities=45% Similarity=0.718 Sum_probs=26.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001746 766 GILLFGPPGTGKTLLAKALATEAGANFIS 794 (1018)
Q Consensus 766 gVLL~GPPGTGKT~LArAIA~elg~~fi~ 794 (1018)
.|+|.|++|+|||++|+++|..+|++++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 38899999999999999999999998875
No 479
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.45 E-value=0.013 Score=59.41 Aligned_cols=27 Identities=44% Similarity=0.669 Sum_probs=21.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001746 767 ILLFGPPGTGKTLLAKALATEAGANFIS 794 (1018)
Q Consensus 767 VLL~GPPGTGKT~LArAIA~elg~~fi~ 794 (1018)
|.|+|+||||||+|+++|+.. |.+++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~ 28 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVP 28 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE-
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEe
Confidence 789999999999999999998 888773
No 480
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.43 E-value=0.34 Score=54.13 Aligned_cols=36 Identities=31% Similarity=0.410 Sum_probs=28.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecc
Q 001746 763 PCKGILLFGPPGTGKTLLAKALATEA---GANFISITGS 798 (1018)
Q Consensus 763 p~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~s 798 (1018)
+++-++|.||+|+|||+++..+|..+ |..+.-+++.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 45678899999999999999998876 5556555554
No 481
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.42 E-value=0.21 Score=51.59 Aligned_cols=111 Identities=18% Similarity=0.164 Sum_probs=59.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEE---Eeccc-------------c-----------chhhhhhHHHHHHHHH
Q 001746 767 ILLFGPPGTGKTLLAKALATEA---GANFIS---ITGST-------------L-----------TSKWFGDAEKLTKALF 816 (1018)
Q Consensus 767 VLL~GPPGTGKT~LArAIA~el---g~~fi~---Is~se-------------L-----------~s~~~ge~ek~I~~lF 816 (1018)
|.+|+++|.|||++|-++|-.+ |..+.. +.... + ......+.....+..+
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a~~~~ 84 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAAAEGW 84 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHHHHHH
Confidence 7789999999999999998776 444333 33310 0 0000111222344455
Q ss_pred HHHHh----cCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCCCCcHHHHhccCc
Q 001746 817 SFASK----LAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVIRRLPR 892 (1018)
Q Consensus 817 ~~A~k----~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~~LD~aLlrRFd~ 892 (1018)
..|+. ....+|+||||-..+...--. ...++..++.. + ..+=||.|... .++.|+.+.|.
T Consensus 85 ~~a~~~~~~~~~dLlVLDEi~~a~~~gli~---------~~~v~~ll~~r---p-~~~evIlTGr~---~p~~l~e~AD~ 148 (159)
T cd00561 85 AFAKEAIASGEYDLVILDEINYALGYGLLD---------VEEVVDLLKAK---P-EDLELVLTGRN---APKELIEAADL 148 (159)
T ss_pred HHHHHHHhcCCCCEEEEechHhHhhCCCCC---------HHHHHHHHHcC---C-CCCEEEEECCC---CCHHHHHhCce
Confidence 55433 356899999998765432111 12344444433 2 23445556644 45556555544
Q ss_pred c
Q 001746 893 R 893 (1018)
Q Consensus 893 ~ 893 (1018)
+
T Consensus 149 V 149 (159)
T cd00561 149 V 149 (159)
T ss_pred e
Confidence 3
No 482
>PRK01184 hypothetical protein; Provisional
Probab=95.42 E-value=0.013 Score=60.56 Aligned_cols=29 Identities=34% Similarity=0.536 Sum_probs=25.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001746 766 GILLFGPPGTGKTLLAKALATEAGANFISI 795 (1018)
Q Consensus 766 gVLL~GPPGTGKT~LArAIA~elg~~fi~I 795 (1018)
-|+|+||||+|||++++ +++++|++++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 48899999999999987 789999888654
No 483
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.42 E-value=0.077 Score=60.47 Aligned_cols=39 Identities=28% Similarity=0.333 Sum_probs=29.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh------C---CcEEEEeccc
Q 001746 761 LRPCKGILLFGPPGTGKTLLAKALATEA------G---ANFISITGST 799 (1018)
Q Consensus 761 ~~p~~gVLL~GPPGTGKT~LArAIA~el------g---~~fi~Is~se 799 (1018)
+.+..-+.|+||||+|||.|+..+|... | ...++++...
T Consensus 93 i~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~ 140 (316)
T TIGR02239 93 IETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEG 140 (316)
T ss_pred CCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCC
Confidence 5666678999999999999999887532 1 2567776654
No 484
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=95.41 E-value=0.045 Score=64.10 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 001746 763 PCKGILLFGPPGTGKTLLAKALATEAG 789 (1018)
Q Consensus 763 p~~gVLL~GPPGTGKT~LArAIA~elg 789 (1018)
+...++|.||||+|||+|++.|++...
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 345599999999999999999999863
No 485
>PRK10263 DNA translocase FtsK; Provisional
Probab=95.40 E-value=0.14 Score=67.07 Aligned_cols=75 Identities=20% Similarity=0.332 Sum_probs=48.9
Q ss_pred eEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEecCCCC--CCcHHHHhccCccccccCCCHH
Q 001746 825 VIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPF--DLDDAVIRRLPRRIYVDLPDAE 902 (1018)
Q Consensus 825 sIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTTN~p~--~LD~aLlrRFd~~I~V~lPd~e 902 (1018)
-||+|||+..|..... .+ ....+..|... . ..-.|.+|.+|.+|. .|...++.-|..+|-|..-+..
T Consensus 1142 IVVIIDE~AdLm~~~~----ke-vE~lI~rLAqk---G---RAaGIHLILATQRPsvDVItg~IKAN~ptRIAfrVsS~~ 1210 (1355)
T PRK10263 1142 IVVLVDEFADLMMTVG----KK-VEELIARLAQK---A---RAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKI 1210 (1355)
T ss_pred EEEEEcChHHHHhhhh----HH-HHHHHHHHHHH---h---hhcCeEEEEEecCcccccchHHHHhhccceEEEEcCCHH
Confidence 4899999988864321 11 11222222221 1 123688889999986 4666777788888999988888
Q ss_pred HHHHHHHH
Q 001746 903 NRMKILRI 910 (1018)
Q Consensus 903 eR~eILk~ 910 (1018)
+-..||..
T Consensus 1211 DSrtILd~ 1218 (1355)
T PRK10263 1211 DSRTILDQ 1218 (1355)
T ss_pred HHHHhcCC
Confidence 87777754
No 486
>PF13245 AAA_19: Part of AAA domain
Probab=95.38 E-value=0.025 Score=51.18 Aligned_cols=22 Identities=50% Similarity=0.764 Sum_probs=16.4
Q ss_pred EEEEcCCCChHH-HHHHHHHHHh
Q 001746 767 ILLFGPPGTGKT-LLAKALATEA 788 (1018)
Q Consensus 767 VLL~GPPGTGKT-~LArAIA~el 788 (1018)
+++.|||||||| ++++.++...
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 666999999999 5555555554
No 487
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.37 E-value=0.015 Score=58.85 Aligned_cols=28 Identities=50% Similarity=0.770 Sum_probs=26.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001746 767 ILLFGPPGTGKTLLAKALATEAGANFIS 794 (1018)
Q Consensus 767 VLL~GPPGTGKT~LArAIA~elg~~fi~ 794 (1018)
|.|+|++|+|||++|+.+|+.+|++++.
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~ 30 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLIS 30 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 8899999999999999999999988765
No 488
>PTZ00035 Rad51 protein; Provisional
Probab=95.36 E-value=0.11 Score=59.65 Aligned_cols=39 Identities=26% Similarity=0.285 Sum_probs=28.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccc
Q 001746 761 LRPCKGILLFGPPGTGKTLLAKALATEA---------GANFISITGST 799 (1018)
Q Consensus 761 ~~p~~gVLL~GPPGTGKT~LArAIA~el---------g~~fi~Is~se 799 (1018)
+.+..-+.|+||||+|||.|+..++... +...++++...
T Consensus 115 i~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~ 162 (337)
T PTZ00035 115 IETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEG 162 (337)
T ss_pred CCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccC
Confidence 5556668899999999999999987543 23456666543
No 489
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.34 E-value=0.15 Score=61.36 Aligned_cols=76 Identities=20% Similarity=0.176 Sum_probs=49.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHH----hCCcEEEEeccccchhhh-------------------------------
Q 001746 761 LRPCKGILLFGPPGTGKTLLAKALATE----AGANFISITGSTLTSKWF------------------------------- 805 (1018)
Q Consensus 761 ~~p~~gVLL~GPPGTGKT~LArAIA~e----lg~~fi~Is~seL~s~~~------------------------------- 805 (1018)
+.+...+||.||||||||+||..++.+ .|-+.++++..+-.....
T Consensus 18 lp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~g~l~~~~~~~~~~~~ 97 (484)
T TIGR02655 18 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSFGWDLQKLVDEGKLFILDASPDPEGQ 97 (484)
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHcCCCHHHHhhcCceEEEecCchhccc
Confidence 566788999999999999999988543 256666655432110000
Q ss_pred -----hhHHHHHHHHHHHHHhcCCeEEEecchhhhh
Q 001746 806 -----GDAEKLTKALFSFASKLAPVIIFVDEVDSLL 836 (1018)
Q Consensus 806 -----ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~ 836 (1018)
-.....+..+........+..|+||-+..+.
T Consensus 98 ~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~ 133 (484)
T TIGR02655 98 DVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVF 133 (484)
T ss_pred cccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhh
Confidence 0123344555556666778899999777764
No 490
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.34 E-value=0.012 Score=61.56 Aligned_cols=22 Identities=41% Similarity=0.709 Sum_probs=17.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHh
Q 001746 767 ILLFGPPGTGKTLLAKALATEA 788 (1018)
Q Consensus 767 VLL~GPPGTGKT~LArAIA~el 788 (1018)
.++.||||||||+++.+++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 8999999999998777776665
No 491
>PLN02674 adenylate kinase
Probab=95.34 E-value=0.016 Score=63.66 Aligned_cols=36 Identities=25% Similarity=0.449 Sum_probs=29.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEeccccc
Q 001746 764 CKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT 801 (1018)
Q Consensus 764 ~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~seL~ 801 (1018)
...|+|.||||+||+++|+.||..+|++.+. +.+++
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~his--~Gdll 66 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHLA--TGDML 66 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEc--hhHHH
Confidence 3569999999999999999999999876554 44443
No 492
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.33 E-value=0.087 Score=60.74 Aligned_cols=114 Identities=15% Similarity=0.158 Sum_probs=62.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEeccccch---------hh------------------
Q 001746 761 LRPCKGILLFGPPGTGKTLLAKALATEA---------GANFISITGSTLTS---------KW------------------ 804 (1018)
Q Consensus 761 ~~p~~gVLL~GPPGTGKT~LArAIA~el---------g~~fi~Is~seL~s---------~~------------------ 804 (1018)
+.+..-++|+|+||+|||.|+..+|... +...++++...-+. .+
T Consensus 120 ~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~~~~~l~~i~~~~~~~ 199 (342)
T PLN03186 120 IETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVLENVAYARAYN 199 (342)
T ss_pred CcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCChhhhccceEEEecCC
Confidence 4556668899999999999999887432 12577777654100 00
Q ss_pred hhhHHHHHHHHHHHHHhcCCeEEEecchhhhhhccCCC-cchHHHHHHHHHHHhhhccccccCCCcEEEEEec
Q 001746 805 FGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGA-FEHEATRRMRNEFMSAWDGLRSKESQKILILGAT 876 (1018)
Q Consensus 805 ~ge~ek~I~~lF~~A~k~~PsIIfIDEID~L~~~r~~~-~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTT 876 (1018)
.......+..+........+.+|+||-|-.++...... .+...-...+..++..|..+... .++.||.|.
T Consensus 200 ~e~~~~ll~~~~~~~~~~~~~LIVIDSI~alfr~~~~~~g~l~~r~~~L~~~l~~L~~lA~~--~~vaVviTN 270 (342)
T PLN03186 200 TDHQSELLLEAASMMAETRFALMIVDSATALYRTEFSGRGELSARQMHLGKFLRSLQRLADE--FGVAVVITN 270 (342)
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHH--cCCEEEEEc
Confidence 00111122223233345578999999999886532111 11111123345666555554322 345555554
No 493
>PTZ00202 tuzin; Provisional
Probab=95.33 E-value=0.23 Score=58.90 Aligned_cols=59 Identities=12% Similarity=0.137 Sum_probs=45.2
Q ss_pred ccccChHHHHHHHHHHHHcccCCchhhccCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecc
Q 001746 729 DDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGS 798 (1018)
Q Consensus 729 dDIgGle~vk~~L~e~V~~pL~~~elf~~~gl~~p~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is~s 798 (1018)
.++.|.+.....|...+... . ...++-++|.||+|+|||+|++.++..++.+.+.+++.
T Consensus 262 ~~FVGReaEla~Lr~VL~~~----------d-~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 262 RQFVSREAEESWVRQVLRRL----------D-TAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred cCCCCcHHHHHHHHHHHhcc----------C-CCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 47789999999998877431 1 12234688999999999999999999998776666654
No 494
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=95.33 E-value=0.51 Score=53.67 Aligned_cols=128 Identities=20% Similarity=0.229 Sum_probs=69.2
Q ss_pred HHHHHHHHHh--c-CCeEEEecchhhhhhccC---CC--cchHHHHHHHHHHHhhhccccccCCCcEE-EEEecC---CC
Q 001746 812 TKALFSFASK--L-APVIIFVDEVDSLLGARG---GA--FEHEATRRMRNEFMSAWDGLRSKESQKIL-ILGATN---RP 879 (1018)
Q Consensus 812 I~~lF~~A~k--~-~PsIIfIDEID~L~~~r~---~~--~~~e~~~~il~~LL~~Ldgl~~~~~~~Vl-VIaTTN---~p 879 (1018)
+..++.+... . .|.++-||++..|+.... .. .-+...-.+...|+..+.+-..-.+..++ .+++|. .+
T Consensus 142 ~~~l~~EL~~~~~~~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~ 221 (309)
T PF10236_consen 142 FQALIRELKAQSKRPPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAP 221 (309)
T ss_pred HHHHHHHHHhcccCCceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEecccccccc
Confidence 4445554432 2 478899999999986521 11 11222234555666665444333333332 255552 22
Q ss_pred C--CCcHHHHhccC---------------------ccccccCCCHHHHHHHHHHHHhccCCCC----cccHHHHHHHccC
Q 001746 880 F--DLDDAVIRRLP---------------------RRIYVDLPDAENRMKILRIFLAHESLES----GFQFNELANATEG 932 (1018)
Q Consensus 880 ~--~LD~aLlrRFd---------------------~~I~V~lPd~eeR~eILk~~L~~~~l~~----dvdl~~LA~~TeG 932 (1018)
. .++.++..+-. ..|.|+..+.+|-..+++.+....-+.. ..-.+++...+.
T Consensus 222 ~~~~l~~~L~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~- 300 (309)
T PF10236_consen 222 KSPTLPVALGGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSN- 300 (309)
T ss_pred CCccchhhhccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcC-
Confidence 3 35555554321 1578888899999999998877544432 222334443334
Q ss_pred CCHHHHHH
Q 001746 933 YSGSDLKN 940 (1018)
Q Consensus 933 fSgaDL~~ 940 (1018)
.+++++..
T Consensus 301 GNp~el~k 308 (309)
T PF10236_consen 301 GNPRELEK 308 (309)
T ss_pred CCHHHhcc
Confidence 46776653
No 495
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.33 E-value=0.066 Score=55.04 Aligned_cols=37 Identities=30% Similarity=0.443 Sum_probs=29.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecccc
Q 001746 764 CKGILLFGPPGTGKTLLAKALATEA---GANFISITGSTL 800 (1018)
Q Consensus 764 ~~gVLL~GPPGTGKT~LArAIA~el---g~~fi~Is~seL 800 (1018)
+.-|.|.|+||+|||++|++++..+ +..+..++...+
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~ 43 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV 43 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH
Confidence 3568999999999999999999987 445666666443
No 496
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.32 E-value=0.15 Score=63.96 Aligned_cols=160 Identities=23% Similarity=0.263 Sum_probs=89.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh--CCcE--EEEecccc-----ch-------hhh---h-------------hHHH
Q 001746 763 PCKGILLFGPPGTGKTLLAKALATEA--GANF--ISITGSTL-----TS-------KWF---G-------------DAEK 810 (1018)
Q Consensus 763 p~~gVLL~GPPGTGKT~LArAIA~el--g~~f--i~Is~seL-----~s-------~~~---g-------------e~ek 810 (1018)
..+-+||+-|.|.|||+++...+..+ +..+ +.++.++- .+ .+. + ..+.
T Consensus 36 ~~RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~ 115 (894)
T COG2909 36 DYRLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLES 115 (894)
T ss_pred CceEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHH
Confidence 34669999999999999999998633 3444 44443322 00 000 0 1233
Q ss_pred HHHHHHHH-HHhcCCeEEEecchhhhhhccCCCcchHHHHHHHHHHHhhhccccccCCCcEEEEEec-CCCCC-CcHHHH
Q 001746 811 LTKALFSF-ASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGAT-NRPFD-LDDAVI 887 (1018)
Q Consensus 811 ~I~~lF~~-A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~~LL~~Ldgl~~~~~~~VlVIaTT-N~p~~-LD~aLl 887 (1018)
.+..+|.+ +....|..+||||.+.+-. .....-+.-|+... ..++.+|.+| ++|.- +..--+
T Consensus 116 l~~~L~~Ela~~~~pl~LVlDDyHli~~--------~~l~~~l~fLl~~~-------P~~l~lvv~SR~rP~l~la~lRl 180 (894)
T COG2909 116 LLSSLLNELASYEGPLYLVLDDYHLISD--------PALHEALRFLLKHA-------PENLTLVVTSRSRPQLGLARLRL 180 (894)
T ss_pred HHHHHHHHHHhhcCceEEEeccccccCc--------ccHHHHHHHHHHhC-------CCCeEEEEEeccCCCCcccceee
Confidence 55666665 3445799999999998732 23334444454432 2346666565 44432 221111
Q ss_pred hccCccccccC----CCHHHHHHHHHHHHhccCCCCcccHHHHHHHccCCCHH-HHHHH
Q 001746 888 RRLPRRIYVDL----PDAENRMKILRIFLAHESLESGFQFNELANATEGYSGS-DLKNL 941 (1018)
Q Consensus 888 rRFd~~I~V~l----Pd~eeR~eILk~~L~~~~l~~dvdl~~LA~~TeGfSga-DL~~L 941 (1018)
+ +..+++.. .+.++-.++|..... ..+ +..++..|-..|+|+.++ .|..|
T Consensus 181 r--~~llEi~~~~Lrf~~eE~~~fl~~~~~-l~L-d~~~~~~L~~~teGW~~al~L~aL 235 (894)
T COG2909 181 R--DELLEIGSEELRFDTEEAAAFLNDRGS-LPL-DAADLKALYDRTEGWAAALQLIAL 235 (894)
T ss_pred h--hhHHhcChHhhcCChHHHHHHHHHcCC-CCC-ChHHHHHHHhhcccHHHHHHHHHH
Confidence 1 11222222 467777777775532 222 455788888888887543 44444
No 497
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.32 E-value=0.025 Score=64.66 Aligned_cols=69 Identities=25% Similarity=0.325 Sum_probs=45.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEe-ccccchh------hhhhHHHHHHHHHHHHHhcCCeEEEecch
Q 001746 765 KGILLFGPPGTGKTLLAKALATEA-----GANFISIT-GSTLTSK------WFGDAEKLTKALFSFASKLAPVIIFVDEV 832 (1018)
Q Consensus 765 ~gVLL~GPPGTGKT~LArAIA~el-----g~~fi~Is-~seL~s~------~~ge~ek~I~~lF~~A~k~~PsIIfIDEI 832 (1018)
.++|+.|++|+|||+++++++.+. +..++.+. ..++... +.....-....+...+.+..|..|++.|+
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGEi 224 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGEV 224 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEeec
Confidence 579999999999999999999876 22334332 2222110 00111223556677788899999999999
Q ss_pred h
Q 001746 833 D 833 (1018)
Q Consensus 833 D 833 (1018)
-
T Consensus 225 R 225 (323)
T PRK13833 225 R 225 (323)
T ss_pred C
Confidence 4
No 498
>PLN02199 shikimate kinase
Probab=95.29 E-value=0.028 Score=63.35 Aligned_cols=33 Identities=27% Similarity=0.467 Sum_probs=30.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001746 764 CKGILLFGPPGTGKTLLAKALATEAGANFISIT 796 (1018)
Q Consensus 764 ~~gVLL~GPPGTGKT~LArAIA~elg~~fi~Is 796 (1018)
.++|+|.|.+|+|||++++.+|+.+|.+|+..+
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 357999999999999999999999999998654
No 499
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.28 E-value=0.071 Score=67.26 Aligned_cols=94 Identities=12% Similarity=0.152 Sum_probs=65.7
Q ss_pred HHHHHHHHHhh--CCCeEEEEcCchhhhhhccCcchHHHHHHHHHHHHhcCCCCEEEEeeccCCCCCccccccccccccc
Q 001746 472 AMEALCEVLHS--TQPLIVYFPDSSLWLSRAVPRCNRKEFVRKVEEMFDQLSGPVVLICGQNKNETGPKEKEKFTMILPN 549 (1018)
Q Consensus 472 ~i~~L~e~~~~--~~p~Iiff~did~~~~~s~~~~~~~~~~s~~~~~l~~l~g~v~vi~~~~~~~~~~~~~~~~~~~~~~ 549 (1018)
.++.||+.+.+ ..+.||++||||.|... .+..++.++.... .-.++++|||.+|..+
T Consensus 855 vLerLF~~L~k~~r~v~IIILDEID~L~kK-----~QDVLYnLFR~~~-~s~SKLiLIGISNdlD--------------- 913 (1164)
T PTZ00112 855 ILDRLFNQNKKDNRNVSILIIDEIDYLITK-----TQKVLFTLFDWPT-KINSKLVLIAISNTMD--------------- 913 (1164)
T ss_pred HHHHHHhhhhcccccceEEEeehHhhhCcc-----HHHHHHHHHHHhh-ccCCeEEEEEecCchh---------------
Confidence 67788887743 35779999999998743 2345666655432 3357788887777543
Q ss_pred cccccCCCCchhhhhcccccCCCcchHHHHhcccc-EEEEcCCChHHHHHHHHHHHHH
Q 001746 550 FGRLAKLPLPLQRLTEGLKATKRSDDNEIYNLFTN-VLSIHPPKEEDLLRTFNKQVEE 606 (1018)
Q Consensus 550 ~~~~~~~~~~~~~LvIGmTnR~d~iD~aL~rrFe~-~ieI~LPdeegRl~Il~iht~~ 606 (1018)
-++.+++.|..||.. ++.|++++.+...+||+..++.
T Consensus 914 --------------------LperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~ 951 (1164)
T PTZ00112 914 --------------------LPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLEN 951 (1164)
T ss_pred --------------------cchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHh
Confidence 124466778777654 5888999999999999887553
No 500
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.26 E-value=0.021 Score=64.63 Aligned_cols=72 Identities=26% Similarity=0.333 Sum_probs=46.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEe-ccccch----------hh--hhhHHHHHHHHHHHHHhcCCeE
Q 001746 762 RPCKGILLFGPPGTGKTLLAKALATEAG--ANFISIT-GSTLTS----------KW--FGDAEKLTKALFSFASKLAPVI 826 (1018)
Q Consensus 762 ~p~~gVLL~GPPGTGKT~LArAIA~elg--~~fi~Is-~seL~s----------~~--~ge~ek~I~~lF~~A~k~~PsI 826 (1018)
....++++.||+|+|||+|+++++..+. ...+.+. ..++.- .. .+...-....++..+.+..|.+
T Consensus 142 ~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~ 221 (308)
T TIGR02788 142 ASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDR 221 (308)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCe
Confidence 3446899999999999999999998763 2222221 111100 00 0111233556777778889999
Q ss_pred EEecchh
Q 001746 827 IFVDEVD 833 (1018)
Q Consensus 827 IfIDEID 833 (1018)
|++||+-
T Consensus 222 ii~gE~r 228 (308)
T TIGR02788 222 IILGELR 228 (308)
T ss_pred EEEeccC
Confidence 9999995
Done!