Query 001746
Match_columns 1018
No_of_seqs 487 out of 3515
Neff 5.5
Searched_HMMs 29240
Date Tue Mar 26 17:00:21 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001746.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1042-1045//hhsearch_pdb/001746hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 1.0 1 1 638.3 17.3 547 176-1007 198-764 (806)
2 1ypw_A Transitional endoplasmi 1.0 1 1 443.8 4.7 547 176-1007 198-764 (806)
3 4b4t_J 26S protease regulatory 1.0 1 1 383.4 24.4 250 722-989 141-394 (405)
4 3cf2_A TER ATPase, transitiona 1.0 1 1 379.8 12.0 287 722-1012 197-487 (806)
5 4b4t_M 26S protease regulatory 1.0 1 1 376.0 24.8 253 722-992 174-430 (434)
6 4b4t_H 26S protease regulatory 1.0 1 1 375.9 24.9 261 723-1002 203-467 (467)
7 4b4t_I 26S protease regulatory 1.0 1 1 375.8 21.7 251 722-990 175-429 (437)
8 4b4t_L 26S protease subunit RP 1.0 1 1 374.1 22.6 250 722-989 174-427 (437)
9 4b4t_K 26S protease regulatory 1.0 1 1 361.5 26.4 250 722-989 165-420 (428)
10 1xwi_A SKD1 protein; VPS4B, AA 1.0 1 1 321.5 28.3 281 723-1009 6-322 (322)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=1.00 E-value=1 Score=638.31 Aligned_cols=547 Identities=25% Similarity=0.433 Sum_probs=443.8
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 65542125654430356989988654025576520000134578877215315896258999999999976099488631
Q 001746 176 KINISWDTFPYYINENTKSLLVECVGSHLKHKKFTATFGARLTSSSGRILLRSVPGTELYRERLIRALARELQVPLLVLD 255 (1018)
Q Consensus 176 ~~~vsfd~FPYylse~Tk~~L~~~~~~hLk~~~~~~~~~~~L~~~s~rILL~~~pgsE~Yqe~LaKALA~~f~a~LL~lD 255 (1018)
--+|+|++...+ +..|..|.+.+..+|+|++++.+++ ....+.|||+|||| ....+||||+|++++++++.++
T Consensus 198 ~~~v~~~dIgGl--~~~~~~l~e~v~~pl~~p~~f~~~g---~~~p~GILL~GPPG--TGKT~LAraiA~elg~~~~~v~ 270 (806)
T 3cf2_A 198 LNEVGYDDIGGC--RKQLAQIKEMVELPLRHPALFKAIG---VKPPRGILLYGPPG--TGKTLIARAVANETGAFFFLIN 270 (806)
T ss_dssp SSSCCGGGCCSC--CTTHHHHHHHHHHHHHCCGGGTSCC---CCCCCEEEEECCTT--SCHHHHHHHHHTTTTCEEEEEE
T ss_pred CCCCCHHHHCCH--HHHHHHHHHHHHHHCCCHHHHHHCC---CCCCCEEEEECCCC--CCHHHHHHHHHHHHCCEEEEEE
T ss_conf 899990351499--9999999999998751989886358---99997589779899--9889999999997198399997
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 57789977788889755666446750000112335630000146755667999667799979999841066737887764
Q 001746 256 SSVLAPYDFADDSSDCESDNYEETSESEVEDENDASNEEEWTSSNEARTDGSDSEADMQATAEAALKKLVPFNLEELEKL 335 (1018)
Q Consensus 256 s~~l~~~~f~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 335 (1018)
.+.+.+ +
T Consensus 271 ~~~l~s-----------------------------------------k-------------------------------- 277 (806)
T 3cf2_A 271 GPEIMS-----------------------------------------K-------------------------------- 277 (806)
T ss_dssp HHHHHS-----------------------------------------S--------------------------------
T ss_pred HHHHHC-----------------------------------------C--------------------------------
T ss_conf 379543-----------------------------------------3--------------------------------
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 22556786534455789974211112479917981887323445423541012479998751002578788887560784
Q 001746 336 SGELDSSSESSKSEAAEPSDTSKRLLKKGDRVKYIGPSVRVEADNRIILGKIMTSDGPKNAYTIIPDRALSSGQRGEVYE 415 (1018)
Q Consensus 336 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~gdrvk~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~s~g~~g~v~e 415 (1018)
|+|
T Consensus 278 ---------------------------------~~g-------------------------------------------- 280 (806)
T 3cf2_A 278 ---------------------------------LAG-------------------------------------------- 280 (806)
T ss_dssp ---------------------------------CTT--------------------------------------------
T ss_pred ---------------------------------CCH--------------------------------------------
T ss_conf ---------------------------------316--------------------------------------------
Q ss_pred ECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHH
Q ss_conf 53881026523556899989888655678999983222256555556640245677999999997307975999729213
Q 001746 416 VNGDRAAVILDISADNKGEGEKDDKVAEQPARPPVYWIDVKHIEHDLDTQAEDCYIAMEALCEVLHSTQPLIVYFPDSSL 495 (1018)
Q Consensus 416 ~n~~k~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~e~~~~~~p~Iiff~did~ 495 (1018)
.-.-.+..+|+.|+..+|+||||||||.
T Consensus 281 ----------------------------------------------------ese~~lr~lF~~A~~~~PsIIfIDEiDa 308 (806)
T 3cf2_A 281 ----------------------------------------------------ESESNLRKAFEEAEKNAPAIIFIDELDA 308 (806)
T ss_dssp ----------------------------------------------------HHHHHHHHHHHHHTTSCSEEEEEESGGG
T ss_pred ----------------------------------------------------HHHHHHHHHHHHHHHCCCEEEEEEHHCC
T ss_conf ----------------------------------------------------7899999999999972992999851002
Q ss_pred HHH--HCCCCCHHHHHHHHHHHHHHCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCC
Q ss_conf 321--02676407899999999873689--99899930367989952222212334544434579872001100123589
Q 001746 496 WLS--RAVPRCNRKEFVRKVEEMFDQLS--GPVVLICGQNKNETGPKEKEKFTMILPNFGRLAKLPLPLQRLTEGLKATK 571 (1018)
Q Consensus 496 ~~~--~s~~~~~~~~~~s~~~~~l~~l~--g~v~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LviGmTnR~ 571 (1018)
+.. .+...+...++++.|+.+||++. ++|+|| |+|||+
T Consensus 309 l~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VI--------------------------------------aaTN~~ 350 (806)
T 3cf2_A 309 IAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVM--------------------------------------AATNRP 350 (806)
T ss_dssp TCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEE--------------------------------------EECSST
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEE--------------------------------------EECCCH
T ss_conf 334457788739999999999997466666987999--------------------------------------966980
Q ss_pred CCCHHHHHH--CCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 751289982--036178976999687999999999997555442231799999986305774322334541024557643
Q 001746 572 RSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLEDHELSCTDLLHVNTDGVILTKQRA 649 (1018)
Q Consensus 572 d~iD~aL~r--rFe~~ieI~LPdee~Rl~Il~iht~~~~~~~~~~~~i~~l~~~l~t~~~~gaDL~~Lct~a~l~s~~~~ 649 (1018)
+++|+||+| ||+++|+|++||.++|.+||++|+.++. ...+.++..++. .|.||+|+||.+||.+|++.+..+.
T Consensus 351 d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~--~~~dvdl~~lA~--~T~GfsgaDL~~Lv~eA~~~A~~r~ 426 (806)
T 3cf2_A 351 NSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK--LADDVDLEQVAN--ETHGHVGADLAALCSEAALQAIRKK 426 (806)
T ss_dssp TTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSE--ECTTCCHHHHHH--HCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCC--CCCCCCHHHHHH--HCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 326988857863616886689798999999999856899--886438999997--5689989999999999999999841
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 44675501122234678875697213478889999998401000057874111244445763210026568999886544
Q 001746 650 EKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQETASRKPTQNLKNLAKDEYESNFVSAVVPPGEIGVRFD 729 (1018)
Q Consensus 650 ~~~v~~A~~~~l~~~~~~~v~~~ki~v~~~df~~AL~~l~p~~~~~~~~~~~~~~~~~~e~e~~~~~~iI~~~e~~vtfd 729 (1018)
...+...... ...-....+.|+++||+.|+.+++|+..+. +....+.++|+
T Consensus 427 ~~~i~~~~~~------~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~-----------------------~~~~~p~v~w~ 477 (806)
T 3cf2_A 427 MDLIDLEDET------IDAEVMNSLAVTMDDFRWALSQSNPSALRE-----------------------TVVEVPQVTWE 477 (806)
T ss_dssp HHHGGGTCCC------CSHHHHHHCEECTTHHHHHHSSSSCCCCCC-----------------------CCCBCCCCCST
T ss_pred CCCCCCCCCC------CCHHHHCCCEEEHHHHHHHHHHCCCCCCCC-----------------------CCCCCCCCCHH
T ss_conf 4512000133------204552255651999999997287831123-----------------------44457887888
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHH
Q ss_conf 35681999999999987313780111039988899159998699983999999999992992999946531112221189
Q 001746 730 DIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAE 809 (1018)
Q Consensus 730 dIgGle~vk~~L~e~V~~pl~~pelf~~~~l~~p~rgILL~GPPGTGKT~LAkAIA~elg~~fi~Is~s~L~s~~~gese 809 (1018)
+++|++++++.|++.+.+|+.+|+.|.+.+ ..+++|+|||||||||||++|+++|++++.+|+.+++++++++|.|+++
T Consensus 478 diggl~~~k~~l~e~v~~p~~~p~~f~~~g-~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese 556 (806)
T 3cf2_A 478 DIGGLEDVKRELQELVQYPVEHPDKFLKFG-MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESE 556 (806)
T ss_dssp TCCSCHHHHHHHTTTTTTTTTCSGGGSSSC-CCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCH
T ss_pred HHCCHHHHHHHHHHHHHHHHHCHHHHHHCC-CCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEECCCHHHCCCCCHHH
T ss_conf 817889999999999975666899997148-8888607986687789639999999983896687424112103343689
Q ss_pred HHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCC--CCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCHHHH
Q ss_conf 999999999872099489853012553115998--605889999998886411666567885799982399999858997
Q 001746 810 KLTKALFSFASKLAPVIIFVDEVDSLLGARGGA--FEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVI 887 (1018)
Q Consensus 810 k~I~~iF~~A~k~~PsIIfIDEID~L~~~r~~~--~~~e~~~~il~eLL~lLdgl~~~~~~~VlVIaTTN~p~~Ld~aLl 887 (1018)
+.++.+|..|++.+||||||||||+|++.|+.. ..+...++++++||.+|+++.. ..+|+||||||+|+.||++++
T Consensus 557 ~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~--~~~V~vi~aTN~p~~lD~All 634 (806)
T 3cf2_A 557 ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST--KKNVFIIGATNRPDIIDPAIL 634 (806)
T ss_dssp HHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCS--SSSEEEECC-CCSSSSCHHHH
T ss_pred HHHHHHHHHHHHCCCCEEECHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCC--CCCEEEEEECCCCHHCCHHHC
T ss_conf 999999999997299635204256776315888889866999999999999748787--799899993798043898471
Q ss_pred H--CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC----
Q ss_conf 0--0374322358999999999999971158887002999999815998999999999999999999999997307----
Q 001746 888 R--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKRG---- 961 (1018)
Q Consensus 888 r--RFd~~I~V~lPs~eeR~eILk~~l~~~~l~~dvdl~~LA~~T~G~SgaDL~~Lv~~Aa~~Airr~l~~e~~~~---- 961 (1018)
| ||++.|+|++|+.++|.+||+.++++..+..++++..+|..|+||||+||.++|.+|++.|+++.++......
T Consensus 635 RpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~ 714 (806)
T 3cf2_A 635 RPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQ 714 (806)
T ss_dssp STTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHHHHC----------
T ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 77855079997996999999999998567999877899999976899999999999999999999999985644433301
Q ss_pred ------CCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf ------8899987668779999999975299920102407999999998389
Q 001746 962 ------KNDAAPVLRPLKLEDFIQSKAKVGPSVAYDAASMNELRKWNEQYGE 1007 (1018)
Q Consensus 962 ------~~~~~~~~~~IT~eDf~~Al~kv~PS~s~~~~~m~~l~kW~digG~ 1007 (1018)
........++|+++||.+|+++++||++.+ .+..+.+|+..++.
T Consensus 715 ~~~~~~~~~~~~~~~~i~~~df~~al~~~~pSvs~~--~l~~y~~~~~~f~~ 764 (806)
T 3cf2_A 715 TNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDN--DIRKYEMFAQTLQQ 764 (806)
T ss_dssp -------------CCC----CCTTTC-----------------CCCC-----
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHHHC
T ss_conf 574100123345668647999999998679999999--99999999999725
No 2
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=1.00 E-value=1 Score=443.80 Aligned_cols=547 Identities=26% Similarity=0.435 Sum_probs=416.6
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 65542125654430356989988654025576520000134578877215315896258999999999976099488631
Q 001746 176 KINISWDTFPYYINENTKSLLVECVGSHLKHKKFTATFGARLTSSSGRILLRSVPGTELYRERLIRALARELQVPLLVLD 255 (1018)
Q Consensus 176 ~~~vsfd~FPYylse~Tk~~L~~~~~~hLk~~~~~~~~~~~L~~~s~rILL~~~pgsE~Yqe~LaKALA~~f~a~LL~lD 255 (1018)
.-.|+|+++-.+ +..+..|.+....+++|++++..++ ......|||.|||| ....+||||||+..+.+++.++
T Consensus 198 ~~~v~~~di~G~--~~~~~~l~e~i~~~l~~~~~~~~l~---i~~~~~vLL~Gp~G--tGKTtLarala~~l~~~~i~v~ 270 (806)
T 1ypw_A 198 LNEVGYDDVGGC--RKQLAQIKEMVELPLRHPALFKAIG---VKPPRGILLYGPPG--TGKTLIARAVANETGAFFFLIN 270 (806)
T ss_dssp SSSCCGGGCCSC--SGGGGHHHHHHHHHHHCGGGGTSSC---CCCCCEEEECSCTT--SSHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCCHHHHCCH--HHHHHHHHHHHHHHHHCHHHHHHCC---CCCCCEEEEECCCC--CCHHHHHHHHHHHCCCCEEEEE
T ss_conf 578998882880--9999999999998742989998638---89997389989399--9879999999997199689997
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 57789977788889755666446750000112335630000146755667999667799979999841066737887764
Q 001746 256 SSVLAPYDFADDSSDCESDNYEETSESEVEDENDASNEEEWTSSNEARTDGSDSEADMQATAEAALKKLVPFNLEELEKL 335 (1018)
Q Consensus 256 s~~l~~~~f~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 335 (1018)
...+.+. + .
T Consensus 271 ~~~l~~~--------~------------------------------------------------------~--------- 279 (806)
T 1ypw_A 271 GPEIMSK--------L------------------------------------------------------A--------- 279 (806)
T ss_dssp HHHHSSS--------S------------------------------------------------------T---------
T ss_pred CHHHHHH--------H------------------------------------------------------H---------
T ss_conf 5576544--------1------------------------------------------------------0---------
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 22556786534455789974211112479917981887323445423541012479998751002578788887560784
Q 001746 336 SGELDSSSESSKSEAAEPSDTSKRLLKKGDRVKYIGPSVRVEADNRIILGKIMTSDGPKNAYTIIPDRALSSGQRGEVYE 415 (1018)
Q Consensus 336 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~gdrvk~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~s~g~~g~v~e 415 (1018)
T Consensus 280 -------------------------------------------------------------------------------- 279 (806)
T 1ypw_A 280 -------------------------------------------------------------------------------- 279 (806)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred ECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHH
Q ss_conf 53881026523556899989888655678999983222256555556640245677999999997307975999729213
Q 001746 416 VNGDRAAVILDISADNKGEGEKDDKVAEQPARPPVYWIDVKHIEHDLDTQAEDCYIAMEALCEVLHSTQPLIVYFPDSSL 495 (1018)
Q Consensus 416 ~n~~k~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~e~~~~~~p~Iiff~did~ 495 (1018)
| ...-.+..+|+.+....|.|+|+|||+.
T Consensus 280 --------------------g-------------------------------~~~~~l~~vf~~a~~~~p~il~iDEid~ 308 (806)
T 1ypw_A 280 --------------------G-------------------------------ESESNLRKAFEEAEKNAPAIIFIDELDA 308 (806)
T ss_dssp --------------------T-------------------------------HHHHHHHHHHHHHHHHCSEEEEEESGGG
T ss_pred --------------------H-------------------------------HHHHHHHHHHHHHHHCCCCEEEECCHHH
T ss_conf --------------------1-------------------------------5899999999999864995798300777
Q ss_pred HHHH--CCCCCHHHHHHHHHHHHHHCCCC--CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCC
Q ss_conf 3210--26764078999999998736899--9899930367989952222212334544434579872001100123589
Q 001746 496 WLSR--AVPRCNRKEFVRKVEEMFDQLSG--PVVLICGQNKNETGPKEKEKFTMILPNFGRLAKLPLPLQRLTEGLKATK 571 (1018)
Q Consensus 496 ~~~~--s~~~~~~~~~~s~~~~~l~~l~g--~v~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LviGmTnR~ 571 (1018)
++.. ..+......+.+.+..+|+++.. .+++| ++||++
T Consensus 309 l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI--------------------------------------~atn~~ 350 (806)
T 1ypw_A 309 IAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVM--------------------------------------AATNRP 350 (806)
T ss_dssp TSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEE--------------------------------------EECSCT
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEE--------------------------------------CCCCCC
T ss_conf 511146663168899999999986541146617876--------------------------------------023981
Q ss_pred CCCHHHHHH--CCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 751289982--036178976999687999999999997555442231799999986305774322334541024557643
Q 001746 572 RSDDNEIYN--LFTNVLSIHPPKEEDLLRTFNKQVEEDRRIVIYRSNLNELHKVLEDHELSCTDLLHVNTDGVILTKQRA 649 (1018)
Q Consensus 572 d~iD~aL~r--rFe~~ieI~LPdee~Rl~Il~iht~~~~~~~~~~~~i~~l~~~l~t~~~~gaDL~~Lct~a~l~s~~~~ 649 (1018)
+.+|+++++ ||+++++|++|+.+.|++||+.++.+.. ...+.++..++. .+.+|.++|+..+|.+++.....+.
T Consensus 351 ~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~--l~~~~~l~~la~--~t~g~~g~dl~~l~~ea~~~a~r~~ 426 (806)
T 1ypw_A 351 NSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK--LADDVDLEQVAN--ETHGHVGADLAALCSEAALQAIRKK 426 (806)
T ss_dssp TTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSC--CCTTCCTHHHHH--SCSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC--CCCCCHHHHHHH--HHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 004999864655444355699999999999999873387--762200677777--6147536899999999999987642
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 44675501122234678875697213478889999998401000057874111244445763210026568999886544
Q 001746 650 EKVVGWAKNHYLSSCSFPSVKGQRLHLPRESLEIAILRLKEQETASRKPTQNLKNLAKDEYESNFVSAVVPPGEIGVRFD 729 (1018)
Q Consensus 650 ~~~v~~A~~~~l~~~~~~~v~~~ki~v~~~df~~AL~~l~p~~~~~~~~~~~~~~~~~~e~e~~~~~~iI~~~e~~vtfd 729 (1018)
...+..... .+ .......+.++..+|..++....|+.. ...++ ..+.++|+
T Consensus 427 ~~~i~~~~~-~~-----~~~~~~~~~v~~~d~~~al~~~~~s~~---------------------~~~~~--~~~~v~~~ 477 (806)
T 1ypw_A 427 MDLIDLEDE-TI-----DAEVMNSLAVTMDDFRWALSQSNPSAL---------------------RETVV--EVPQVTWE 477 (806)
T ss_dssp TTTTSCHHH-HC-----CHHHHTTCCCCTTHHHHHHHHSCCCCC---------------------CCCCC--CCCCCSSC
T ss_pred CCCCCHHHH-CC-----CHHHHHHHHHHHHHHHCCCCCCCCHHH---------------------HHHCC--CCCCCCCC
T ss_conf 010115542-01-----012444555556653111123571444---------------------20002--57542111
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHH
Q ss_conf 35681999999999987313780111039988899159998699983999999999992992999946531112221189
Q 001746 730 DIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAE 809 (1018)
Q Consensus 730 dIgGle~vk~~L~e~V~~pl~~pelf~~~~l~~p~rgILL~GPPGTGKT~LAkAIA~elg~~fi~Is~s~L~s~~~gese 809 (1018)
+++|++++++.+.+++.+++.+++.|...+ ..++.++||+||||||||+||+++|++++.+|+.++++++.+.|.++.+
T Consensus 478 di~gl~~vk~~l~~~v~~~~~~~~~~~~~~-~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~ 556 (806)
T 1ypw_A 478 DIGGLEDVKRELQELVQYPVEHPDKFLKFG-MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESE 556 (806)
T ss_dssp SSSCCCCHHHHHHTTTTSSSSSCTTTTCCC-CCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSS
T ss_pred CCCCCHHHHHHHHHHHHHHHHCHHHHHHCC-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECHHHHHHHCCCCH
T ss_conf 124430222218999975553639897548-8877536897799987899999999984898799861676553057547
Q ss_pred HHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCHHHH
Q ss_conf 9999999998720994898530125531159986--05889999998886411666567885799982399999858997
Q 001746 810 KLTKALFSFASKLAPVIIFVDEVDSLLGARGGAF--EHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFDLDDAVI 887 (1018)
Q Consensus 810 k~I~~iF~~A~k~~PsIIfIDEID~L~~~r~~~~--~~e~~~~il~eLL~lLdgl~~~~~~~VlVIaTTN~p~~Ld~aLl 887 (1018)
..++.+|..++...|+||||||||.+...+.... ......+++++|+..|+++.. ..+++||+|||+++.||++++
T Consensus 557 ~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~--~~~v~vI~tTN~~~~ld~all 634 (806)
T 1ypw_A 557 ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST--KKNVFIIGATNRPDIIDPAIL 634 (806)
T ss_dssp HHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC--------CCBCCCCCBSCGGGSCTTS
T ss_pred HHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCC--CCCEEEEEECCCCCCCCHHHH
T ss_conf 889999999870698599998744542112687777641689999999998754566--687699984387122798783
Q ss_pred H--CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC----
Q ss_conf 0--0374322358999999999999971158887002999999815998999999999999999999999997307----
Q 001746 888 R--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKRG---- 961 (1018)
Q Consensus 888 r--RFd~~I~V~lPs~eeR~eILk~~l~~~~l~~dvdl~~LA~~T~G~SgaDL~~Lv~~Aa~~Airr~l~~e~~~~---- 961 (1018)
| ||+..|++++|+.++|..||+.+++...+..++++..++..+.||+++||.++|..|+..++++.+..+....
T Consensus 635 rpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~~~~~~~~~~~~~ 714 (806)
T 1ypw_A 635 RPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQ 714 (806)
T ss_dssp SGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC------------
T ss_pred CCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 76556730555997999999999998645999752279999973500599999999999999999999998776654301
Q ss_pred ------CCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf ------8899987668779999999975299920102407999999998389
Q 001746 962 ------KNDAAPVLRPLKLEDFIQSKAKVGPSVAYDAASMNELRKWNEQYGE 1007 (1018)
Q Consensus 962 ------~~~~~~~~~~IT~eDf~~Al~kv~PS~s~~~~~m~~l~kW~digG~ 1007 (1018)
.........+|+++||..|++.++|+++.+ .+..+.+|...+..
T Consensus 715 ~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~svs~~--~~~~ye~~~~~~~~ 764 (806)
T 1ypw_A 715 TNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDN--DIRKYEMFAQTLQQ 764 (806)
T ss_dssp ------------CCTTTTTTSSCCCCCC------------------------
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHHHH
T ss_conf 464312334346667607999999998678999999--99999999999976
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=383.44 Aligned_cols=250 Identities=34% Similarity=0.562 Sum_probs=230.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 99886544356819999999999873137801110399888991599986999839999999999929929999465311
Q 001746 722 GEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT 801 (1018)
Q Consensus 722 ~e~~vtfddIgGle~vk~~L~e~V~~pl~~pelf~~~~l~~p~rgILL~GPPGTGKT~LAkAIA~elg~~fi~Is~s~L~ 801 (1018)
.-|+++|+||+|++++++.|++.|.+|+.+|++|.+.+ ..||+|+|||||||||||++|+|+|++++.+|+.++++++.
T Consensus 141 ~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~g-i~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 219 (405)
T 4b4t_J 141 KVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLG-IAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELV 219 (405)
T ss_dssp CSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHT-CCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGS
T ss_pred CCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCC-CCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEHHHHH
T ss_conf 79999888828889999999999999874999998679-99888258858999987899999998518885288868951
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCC
Q ss_conf 122211899999999998720994898530125531159986--058899999988864116665678857999823999
Q 001746 802 SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAF--EHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP 879 (1018)
Q Consensus 802 s~~~gesek~I~~iF~~A~k~~PsIIfIDEID~L~~~r~~~~--~~e~~~~il~eLL~lLdgl~~~~~~~VlVIaTTN~p 879 (1018)
++|.|++++.++.+|..|+..+||||||||||++++.|.... ......+++++||..||++.. ..+|+||||||+|
T Consensus 220 sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~--~~~V~vIaATNrp 297 (405)
T 4b4t_J 220 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET--SKNIKIIMATNRL 297 (405)
T ss_dssp CSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC--CCCEEEEEEESCS
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC--CCCEEEEECCCCH
T ss_conf 13354689999999999987099467653341111577888999768999999999996043388--8875788126981
Q ss_pred CCCCHHHHH--CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 998589970--037432235899999999999997115888700299999981599899999999999999999999999
Q 001746 880 FDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEE 957 (1018)
Q Consensus 880 ~~Ld~aLlr--RFd~~I~V~lPs~eeR~eILk~~l~~~~l~~dvdl~~LA~~T~G~SgaDL~~Lv~~Aa~~Airr~l~~e 957 (1018)
+.||++++| ||++.|+|++|+.++|.+||+.++++..+..++++..+|..|+||||+||.++|.+|++.|+++-
T Consensus 298 d~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~---- 373 (405)
T 4b4t_J 298 DILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRER---- 373 (405)
T ss_dssp SSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTT----
T ss_pred HHCCHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC----
T ss_conf 4489967287767669976996999999999998559999965799999987799999999999999999999869----
Q ss_pred HHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 73078899987668779999999975299920
Q 001746 958 RKRGKNDAAPVLRPLKLEDFIQSKAKVGPSVA 989 (1018)
Q Consensus 958 ~~~~~~~~~~~~~~IT~eDf~~Al~kv~PS~s 989 (1018)
...|+++||..|+.++.+...
T Consensus 374 -----------~~~vt~~Df~~Al~~v~~~~~ 394 (405)
T 4b4t_J 374 -----------RIHVTQEDFELAVGKVMNKNQ 394 (405)
T ss_dssp -----------CSBCCHHHHHHHHHHHHHHHT
T ss_pred -----------CCCCCHHHHHHHHHHHHCCCC
T ss_conf -----------987599999999999857265
No 4
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=1.00 E-value=1 Score=379.79 Aligned_cols=287 Identities=33% Similarity=0.555 Sum_probs=255.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 99886544356819999999999873137801110399888991599986999839999999999929929999465311
Q 001746 722 GEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT 801 (1018)
Q Consensus 722 ~e~~vtfddIgGle~vk~~L~e~V~~pl~~pelf~~~~l~~p~rgILL~GPPGTGKT~LAkAIA~elg~~fi~Is~s~L~ 801 (1018)
..+.++|+||+|++++++.|++.+.+|+++|++|.+.+ ..||+|||||||||||||+||+++|++++.+|+.++++++.
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g-~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~ 275 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIG-VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 275 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCC-CCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHH
T ss_pred CCCCCCHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHCC-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEEEEEHHHHH
T ss_conf 58999903514999999999999998751989886358-99997589779899988999999999719839999737954
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCC
Q ss_conf 12221189999999999872099489853012553115998605889999998886411666567885799982399999
Q 001746 802 SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFD 881 (1018)
Q Consensus 802 s~~~gesek~I~~iF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~eLL~lLdgl~~~~~~~VlVIaTTN~p~~ 881 (1018)
++|.|++++.++.+|..|++.+||||||||||.+++.|... ..+..++++++|+.+|+++.. ..+|+||++||+++.
T Consensus 276 sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~-~~~~~~riv~~LL~~mdg~~~--~~~V~VIaaTN~~d~ 352 (806)
T 3cf2_A 276 SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGLKQ--RAHVIVMAATNRPNS 352 (806)
T ss_dssp SSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTC-CCTTHHHHHHHHHTHHHHCCG--GGCEEEEEECSSTTT
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEEHHCCCCCCCCCC-CCHHHHHHHHHHHHHHHCCCC--CCCEEEEEECCCHHH
T ss_conf 33316789999999999997299299985100233445778-873999999999999746666--698799996698032
Q ss_pred CCHHHHH--CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8589970--03743223589999999999999711588870029999998159989999999999999999999999973
Q 001746 882 LDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERK 959 (1018)
Q Consensus 882 Ld~aLlr--RFd~~I~V~lPs~eeR~eILk~~l~~~~l~~dvdl~~LA~~T~G~SgaDL~~Lv~~Aa~~Airr~l~~e~~ 959 (1018)
||++++| ||++.|++++|+.++|.+||+.++++..+..++++..+|..|+||+|+||.++|.+|++.++++.......
T Consensus 353 LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~ 432 (806)
T 3cf2_A 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 432 (806)
T ss_dssp SCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred CCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 69888578636168866897989999999998568998864389999975689989999999999999999841451200
Q ss_pred CCCCCC--CCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 078899--98766877999999997529992010240799999999838998755
Q 001746 960 RGKNDA--APVLRPLKLEDFIQSKAKVGPSVAYDAASMNELRKWNEQYGEGGSRR 1012 (1018)
Q Consensus 960 ~~~~~~--~~~~~~IT~eDf~~Al~kv~PS~s~~~~~m~~l~kW~digG~~gsrk 1012 (1018)
...... ......++++||..|+..+.|+...+.....+.+.|+|++|+...++
T Consensus 433 ~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~ 487 (806)
T 3cf2_A 433 EDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKR 487 (806)
T ss_dssp TCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHH
T ss_pred CCCCCCHHHHCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCHHHHHH
T ss_conf 0133204552255651999999997287831123444578878888178899999
No 5
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=376.03 Aligned_cols=253 Identities=32% Similarity=0.561 Sum_probs=233.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 99886544356819999999999873137801110399888991599986999839999999999929929999465311
Q 001746 722 GEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT 801 (1018)
Q Consensus 722 ~e~~vtfddIgGle~vk~~L~e~V~~pl~~pelf~~~~l~~p~rgILL~GPPGTGKT~LAkAIA~elg~~fi~Is~s~L~ 801 (1018)
..|.++|+||+|++++++.|++.|.+|+.+|+.|.+.+ ..|++|+|||||||||||++|+|+|++++.+|+.++++++.
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g-~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMG-IRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHC-CCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCCHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHCC-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHH
T ss_conf 89799867609579999999999999974999998679-99887268779499988999999999959988998644643
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCCC--HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCC
Q ss_conf 1222118999999999987209948985301255311599860--58899999988864116665678857999823999
Q 001746 802 SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFE--HEATRRMRNEFMSAWDGLRSKESQKILILGATNRP 879 (1018)
Q Consensus 802 s~~~gesek~I~~iF~~A~k~~PsIIfIDEID~L~~~r~~~~~--~e~~~~il~eLL~lLdgl~~~~~~~VlVIaTTN~p 879 (1018)
++|.|++++.++.+|..|+..+||||||||+|.+++.|..... .....+++++||..++++.. ..+|+||||||+|
T Consensus 253 ~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~--~~~ViVIaaTNrp 330 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSS--DDRVKVLAATNRV 330 (434)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCS--SCSSEEEEECSSC
T ss_pred HCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCC--CCCEEEEEECCCC
T ss_conf 13456389999999999986199089603325665225778888746999999999997136688--8998999948992
Q ss_pred CCCCHHHHH--CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 998589970--037432235899999999999997115888700299999981599899999999999999999999999
Q 001746 880 FDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEE 957 (1018)
Q Consensus 880 ~~Ld~aLlr--RFd~~I~V~lPs~eeR~eILk~~l~~~~l~~dvdl~~LA~~T~G~SgaDL~~Lv~~Aa~~Airr~l~~e 957 (1018)
+.||++++| ||++.|+|++|+.++|.+||+.++++..+..++++..+|..|+||||+||.++|.+|++.|+++.
T Consensus 331 ~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~---- 406 (434)
T 4b4t_M 331 DVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNG---- 406 (434)
T ss_dssp CCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHT----
T ss_pred HHCCHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC----
T ss_conf 2339967157740389980895999999999998568999876799999986899899999999999999999869----
Q ss_pred HHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHH
Q ss_conf 73078899987668779999999975299920102
Q 001746 958 RKRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAYDA 992 (1018)
Q Consensus 958 ~~~~~~~~~~~~~~IT~eDf~~Al~kv~PS~s~~~ 992 (1018)
...|+++||..|+.+++|+.+...
T Consensus 407 -----------~~~i~~~Df~~Al~~v~~~~~~~i 430 (434)
T 4b4t_M 407 -----------QSSVKHEDFVEGISEVQARKSKSV 430 (434)
T ss_dssp -----------CSSBCHHHHHHHHHSCSSSCCCCC
T ss_pred -----------CCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf -----------987699999999999737777573
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=375.85 Aligned_cols=261 Identities=33% Similarity=0.556 Sum_probs=234.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCH
Q ss_conf 98865443568199999999998731378011103998889915999869998399999999999299299994653111
Q 001746 723 EIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTS 802 (1018)
Q Consensus 723 e~~vtfddIgGle~vk~~L~e~V~~pl~~pelf~~~~l~~p~rgILL~GPPGTGKT~LAkAIA~elg~~fi~Is~s~L~s 802 (1018)
.|+++|+||+|++++++.|++.|.+|+.+|+.|.+.+ ..|++|||||||||||||++|+|||++++.+|+.++++++.+
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G-i~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~s 281 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG-IDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ 281 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT-CCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCC
T ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHCC-CCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEHHHHHC
T ss_conf 9999878854599999999999998842999998779-999981476489998099999999844689869988699502
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCC
Q ss_conf 22211899999999998720994898530125531159986--0588999999888641166656788579998239999
Q 001746 803 KWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAF--EHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPF 880 (1018)
Q Consensus 803 ~~~gesek~I~~iF~~A~k~~PsIIfIDEID~L~~~r~~~~--~~e~~~~il~eLL~lLdgl~~~~~~~VlVIaTTN~p~ 880 (1018)
+|.|++++.++.+|..|+..+||||||||+|.++..|.... ......++++++|..|++... ..+|+||+|||+|+
T Consensus 282 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~--~~~ViVIaATNrpd 359 (467)
T 4b4t_H 282 KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP--RGNIKVMFATNRPN 359 (467)
T ss_dssp CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC--TTTEEEEEECSCTT
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC--CCCEEEEECCCCCC
T ss_conf 6677899999999999876178467522321101355676778627899999999998655578--88379882878931
Q ss_pred CCCHHHHH--CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98589970--0374322358999999999999971158887002999999815998999999999999999999999997
Q 001746 881 DLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEER 958 (1018)
Q Consensus 881 ~Ld~aLlr--RFd~~I~V~lPs~eeR~eILk~~l~~~~l~~dvdl~~LA~~T~G~SgaDL~~Lv~~Aa~~Airr~l~~e~ 958 (1018)
.||++++| ||++.|+|++|+.++|.+||+.++++..+..++++..+|..|+||+|+||.++|.+|++.|+++.
T Consensus 360 ~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~----- 434 (467)
T 4b4t_H 360 TLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR----- 434 (467)
T ss_dssp SBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHT-----
T ss_pred CCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC-----
T ss_conf 179546366655079983896999999999998548999877799999977799999999999999999999838-----
Q ss_pred HCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 30788999876687799999999752999201024079999999
Q 001746 959 KRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAYDAASMNELRKWN 1002 (1018)
Q Consensus 959 ~~~~~~~~~~~~~IT~eDf~~Al~kv~PS~s~~~~~m~~l~kW~ 1002 (1018)
...|+++||..|++++.+...+- .....+.+||
T Consensus 435 ----------~~~it~~Df~~Al~kV~~g~~k~-s~~~~y~~~n 467 (467)
T 4b4t_H 435 ----------RKVATEKDFLKAVDKVISGYKKF-SSTSRYMQYN 467 (467)
T ss_dssp ----------CSSBCHHHHHHHHHHHHHHHCC------------
T ss_pred ----------CCCCCHHHHHHHHHHHHCCCCCC-HHHHHHHHHC
T ss_conf ----------87669999999999996474561-2578998619
No 7
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=375.76 Aligned_cols=251 Identities=33% Similarity=0.565 Sum_probs=230.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 99886544356819999999999873137801110399888991599986999839999999999929929999465311
Q 001746 722 GEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT 801 (1018)
Q Consensus 722 ~e~~vtfddIgGle~vk~~L~e~V~~pl~~pelf~~~~l~~p~rgILL~GPPGTGKT~LAkAIA~elg~~fi~Is~s~L~ 801 (1018)
..++++|+||+|++++++.|++.|.+|+.+|+.|.+.+ ..|++|+|||||||||||++|+|+|++++.+|+.++++++.
T Consensus 175 ~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~G-i~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~ 253 (437)
T 4b4t_I 175 KSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMG-IKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELI 253 (437)
T ss_dssp SSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHT-CCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGC
T ss_pred CCCCCCCEECCCHHHHHHHHHHHHHHHHHCHHHHHHCC-CCCCCCCCEECCCCCHHHHHHHHHHHHHCCCEEEEEHHHHH
T ss_conf 68998600557699999999999999876999998679-99777884488999639999999999859987998879953
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCC
Q ss_conf 122211899999999998720994898530125531159986--058899999988864116665678857999823999
Q 001746 802 SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAF--EHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP 879 (1018)
Q Consensus 802 s~~~gesek~I~~iF~~A~k~~PsIIfIDEID~L~~~r~~~~--~~e~~~~il~eLL~lLdgl~~~~~~~VlVIaTTN~p 879 (1018)
++|.|++++.++.+|..|+..+||||||||||.++..|.... ......+++++||..+++... ..+|+||+|||+|
T Consensus 254 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~--~~~ViVIaATNrp 331 (437)
T 4b4t_I 254 QKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD--RGDVKVIMATNKI 331 (437)
T ss_dssp CSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC--SSSEEEEEEESCS
T ss_pred HCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC--CCCEEEEEECCCH
T ss_conf 14476699999999999986599189876122203667788877658999999999997247678--8997999957980
Q ss_pred CCCCHHHHH--CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 998589970--037432235899999999999997115888700299999981599899999999999999999999999
Q 001746 880 FDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEE 957 (1018)
Q Consensus 880 ~~Ld~aLlr--RFd~~I~V~lPs~eeR~eILk~~l~~~~l~~dvdl~~LA~~T~G~SgaDL~~Lv~~Aa~~Airr~l~~e 957 (1018)
+.||++++| ||++.|+|++|+.++|.+||+.++++..+..++++..+|..|+||||+||.++|.+|++.|+++.
T Consensus 332 d~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~---- 407 (437)
T 4b4t_I 332 ETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRER---- 407 (437)
T ss_dssp TTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTT----
T ss_pred HHCCHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC----
T ss_conf 5559988648860279980896999999999999648999976799999976799989999999999999999848----
Q ss_pred HHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCH
Q ss_conf 730788999876687799999999752999201
Q 001746 958 RKRGKNDAAPVLRPLKLEDFIQSKAKVGPSVAY 990 (1018)
Q Consensus 958 ~~~~~~~~~~~~~~IT~eDf~~Al~kv~PS~s~ 990 (1018)
...|+++||..|++++.|+...
T Consensus 408 -----------~~~It~eDf~~Al~rv~~~~~~ 429 (437)
T 4b4t_I 408 -----------RMQVTAEDFKQAKERVMKNKVE 429 (437)
T ss_dssp -----------CSCBCHHHHHHHHHHHHHHHCC
T ss_pred -----------CCCCCHHHHHHHHHHHHCCCCH
T ss_conf -----------9966999999999987079873
No 8
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=374.11 Aligned_cols=250 Identities=34% Similarity=0.625 Sum_probs=230.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 99886544356819999999999873137801110399888991599986999839999999999929929999465311
Q 001746 722 GEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT 801 (1018)
Q Consensus 722 ~e~~vtfddIgGle~vk~~L~e~V~~pl~~pelf~~~~l~~p~rgILL~GPPGTGKT~LAkAIA~elg~~fi~Is~s~L~ 801 (1018)
..|+++|+||+|++++++.|++.|.+|+.+|++|.+.+ ..||+|+|||||||||||++|+|+|++++.+|+.+++++++
T Consensus 174 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g-~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~ 252 (437)
T 4b4t_L 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG-IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIV 252 (437)
T ss_dssp ESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC-CCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTC
T ss_pred CCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCC-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHC
T ss_conf 59998966717859999999999999874999998679-89787699989999849999999999859998998414620
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCC
Q ss_conf 122211899999999998720994898530125531159986--058899999988864116665678857999823999
Q 001746 802 SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAF--EHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP 879 (1018)
Q Consensus 802 s~~~gesek~I~~iF~~A~k~~PsIIfIDEID~L~~~r~~~~--~~e~~~~il~eLL~lLdgl~~~~~~~VlVIaTTN~p 879 (1018)
++|.|++++.++.+|..|+..+||||||||||.+++.|.... ......+++++||..|+++.. ..+++||+|||+|
T Consensus 253 sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~--~~~vivI~ATNrp 330 (437)
T 4b4t_L 253 DKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDN--LGQTKIIMATNRP 330 (437)
T ss_dssp CSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSC--TTSSEEEEEESST
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC--CCCEEEEEECCCC
T ss_conf 55201789999999999986389646420443333333447887536899999999998346667--7986999933990
Q ss_pred CCCCHHHHH--CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 998589970--037432235899999999999997115888700299999981599899999999999999999999999
Q 001746 880 FDLDDAVIR--RLPRRIYVDLPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEE 957 (1018)
Q Consensus 880 ~~Ld~aLlr--RFd~~I~V~lPs~eeR~eILk~~l~~~~l~~dvdl~~LA~~T~G~SgaDL~~Lv~~Aa~~Airr~l~~e 957 (1018)
+.||++++| ||++.|+|++|+.++|.+||+.++++..+..++++..+|..|+||||+||.++|.+|++.|+++.
T Consensus 331 ~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~---- 406 (437)
T 4b4t_L 331 DTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDD---- 406 (437)
T ss_dssp TSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTT----
T ss_pred HHHCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC----
T ss_conf 3318978277710200135996999999999998658999864589999976899999999999999999999869----
Q ss_pred HHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 73078899987668779999999975299920
Q 001746 958 RKRGKNDAAPVLRPLKLEDFIQSKAKVGPSVA 989 (1018)
Q Consensus 958 ~~~~~~~~~~~~~~IT~eDf~~Al~kv~PS~s 989 (1018)
...|+++||..|++++.|+..
T Consensus 407 -----------~~~i~~~d~~~Al~~v~~~~k 427 (437)
T 4b4t_L 407 -----------RDHINPDDLMKAVRKVAEVKK 427 (437)
T ss_dssp -----------CSSBCHHHHHHHHHHHHHTCC
T ss_pred -----------CCCCCHHHHHHHHHHHHHCCC
T ss_conf -----------987799999999999875037
No 9
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=361.49 Aligned_cols=250 Identities=32% Similarity=0.507 Sum_probs=228.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 99886544356819999999999873137801110399888991599986999839999999999929929999465311
Q 001746 722 GEIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLT 801 (1018)
Q Consensus 722 ~e~~vtfddIgGle~vk~~L~e~V~~pl~~pelf~~~~l~~p~rgILL~GPPGTGKT~LAkAIA~elg~~fi~Is~s~L~ 801 (1018)
..|+++|+||+|++++++.|++.+.+|+.+|+.|.+.| ..|++|+|||||||||||++|+|+|++++++|+.++++++.
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g-~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~ 243 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG-IDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFV 243 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC-CCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTC
T ss_pred CCCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCC-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCHHH
T ss_conf 89999888851699999999999999873999998679-99886588889899888999999999867996999330443
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCC--CCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCC
Q ss_conf 12221189999999999872099489853012553115998--6058899999988864116665678857999823999
Q 001746 802 SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGA--FEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRP 879 (1018)
Q Consensus 802 s~~~gesek~I~~iF~~A~k~~PsIIfIDEID~L~~~r~~~--~~~e~~~~il~eLL~lLdgl~~~~~~~VlVIaTTN~p 879 (1018)
++|.|++++.++.+|..|+..+||||||||+|.+++.|... .......+++++|+..|+|+.. ..+++||||||+|
T Consensus 244 ~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~--~~~v~vI~aTN~~ 321 (428)
T 4b4t_K 244 HKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQ--STNVKVIMATNRA 321 (428)
T ss_dssp CSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCS--SCSEEEEEEESCS
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC--CCCEEEEEECCCH
T ss_conf 14546059999999999997399746300224330355678788871899999999998438787--7997999961981
Q ss_pred CCCCHHHHH--CCCCCCCCC-CCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 998589970--037432235-89999999999999711588870029999998159989999999999999999999999
Q 001746 880 FDLDDAVIR--RLPRRIYVD-LPDAENRMKILRIFLAHESLESGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEE 956 (1018)
Q Consensus 880 ~~Ld~aLlr--RFd~~I~V~-lPs~eeR~eILk~~l~~~~l~~dvdl~~LA~~T~G~SgaDL~~Lv~~Aa~~Airr~l~~ 956 (1018)
+.||++++| ||++.|+|| +|+.++|..||+.++++..+..++++..+|..|+||||+||.++|.+|++.|+++.
T Consensus 322 ~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~--- 398 (428)
T 4b4t_K 322 DTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN--- 398 (428)
T ss_dssp SSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT---
T ss_pred HHCCHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC---
T ss_conf 55696663687515999819999999999999998557999963589999977799889999999999999999879---
Q ss_pred HHHCCCCCCCCCCCCCCHHHHHHHHHHH-CCCCC
Q ss_conf 9730788999876687799999999752-99920
Q 001746 957 ERKRGKNDAAPVLRPLKLEDFIQSKAKV-GPSVA 989 (1018)
Q Consensus 957 e~~~~~~~~~~~~~~IT~eDf~~Al~kv-~PS~s 989 (1018)
...|+++||.+|+.++ +++..
T Consensus 399 ------------~~~i~~~d~~~A~~~~~~~~~~ 420 (428)
T 4b4t_K 399 ------------RYVILQSDLEEAYATQVKTDNT 420 (428)
T ss_dssp ------------CSSBCHHHHHHHHHHHSCSCCC
T ss_pred ------------CCCCCHHHHHHHHHHHHCCCCC
T ss_conf ------------9877999999999976176689
No 10
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=321.51 Aligned_cols=281 Identities=40% Similarity=0.712 Sum_probs=244.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHH-CCCEEEEECCCCC
Q ss_conf 988654435681999999999987313780111039988899159998699983999999999992-9929999465311
Q 001746 723 EIGVRFDDIGALEDVKKALNELVILPMRRPDLFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEA-GANFISITGSTLT 801 (1018)
Q Consensus 723 e~~vtfddIgGle~vk~~L~e~V~~pl~~pelf~~~~l~~p~rgILL~GPPGTGKT~LAkAIA~el-g~~fi~Is~s~L~ 801 (1018)
.+.++|+||+|++.+++.|++.+.+|++++++|... ..|++++||+||||||||++|+++|+++ +.+|+.++++++.
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~--~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK--RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 83 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTT--CCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSC
T ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHCC--CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHH
T ss_conf 999998873498999999999999987698977178--899954999899996099999999998089967998749977
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCC
Q ss_conf 12221189999999999872099489853012553115998605889999998886411666567885799982399999
Q 001746 802 SKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMSAWDGLRSKESQKILILGATNRPFD 881 (1018)
Q Consensus 802 s~~~gesek~I~~iF~~A~k~~PsIIfIDEID~L~~~r~~~~~~e~~~~il~eLL~lLdgl~~~~~~~VlVIaTTN~p~~ 881 (1018)
+.|.++.++.++.+|..++...|+||||||||.+.+.+... ......+++++|+..++++... ..+++||++||.++.
T Consensus 84 ~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~ld~~~~~-~~~v~vI~atn~~~~ 161 (322)
T 1xwi_A 84 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN-ESEAARRIKTEFLVQMQGVGVD-NDGILVLGATNIPWV 161 (322)
T ss_dssp CSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC-CTTHHHHHHHHHHHHHHCSSSC-CTTEEEEEEESCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHCCCCCCC-CCHHHHHHHHHHHHHHHCCCCC-CCCEEEEEECCCCCC
T ss_conf 64311999999999999986299589960478753556665-3358999999999997434566-888799996698565
Q ss_pred CCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 8589970037432235899999999999997115888-700299999981599899999999999999999999999730
Q 001746 882 LDDAVIRRLPRRIYVDLPDAENRMKILRIFLAHESLE-SGFQFNELANATEGYSGSDLKNLCIAAAYRPVQELLEEERKR 960 (1018)
Q Consensus 882 Ld~aLlrRFd~~I~V~lPs~eeR~eILk~~l~~~~l~-~dvdl~~LA~~T~G~SgaDL~~Lv~~Aa~~Airr~l~~e~~~ 960 (1018)
+|++++|||+..+++++|+.++|..|++.++...... .+.++..++..+.||+|+||..+|..|++.++++........
T Consensus 162 ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~~~~~ 241 (322)
T 1xwi_A 162 LDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFK 241 (322)
T ss_dssp SCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHCSEEE
T ss_pred CCHHHHHHCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999931676899579699999999999972178889999999999976999999999999999999999998645555
Q ss_pred -----CC-----------------------------CCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf -----78-----------------------------89998766877999999997529992010240799999999838
Q 001746 961 -----GK-----------------------------NDAAPVLRPLKLEDFIQSKAKVGPSVAYDAASMNELRKWNEQYG 1006 (1018)
Q Consensus 961 -----~~-----------------------------~~~~~~~~~IT~eDf~~Al~kv~PS~s~~~~~m~~l~kW~digG 1006 (1018)
.. ........+|+++||..|+.+++||++.+ .+..+.+|++.||
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~~~~--~~~~~~~~~~~~~ 319 (322)
T 1xwi_A 242 KVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEH--DLLKLKKFTEDFG 319 (322)
T ss_dssp EEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSCCHH--HHHHHHHHHHTTC
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHHC
T ss_conf 42144333310000000255654441000012123650003578708999999998679999999--9999999999974
Q ss_pred CCC
Q ss_conf 998
Q 001746 1007 EGG 1009 (1018)
Q Consensus 1007 ~~g 1009 (1018)
.+|
T Consensus 320 ~~~ 322 (322)
T 1xwi_A 320 QEG 322 (322)
T ss_dssp SCC
T ss_pred CCC
T ss_conf 699
Done!