Query 001747
Match_columns 1018
No_of_seqs 460 out of 3763
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 08:22:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001747.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001747hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2012 Ubiquitin activating e 100.0 4E-259 8E-264 2190.1 71.1 1001 5-1017 9-1013(1013)
2 TIGR01408 Ube1 ubiquitin-activ 100.0 1E-230 3E-235 2116.5 95.4 1005 10-1018 1-1008(1008)
3 cd01490 Ube1_repeat2 Ubiquitin 100.0 4E-120 9E-125 1032.8 40.5 430 432-971 1-435 (435)
4 KOG2013 SMT3/SUMO-activating c 100.0 1.2E-81 2.6E-86 689.2 24.7 471 423-979 5-499 (603)
5 cd01489 Uba2_SUMO Ubiquitin ac 100.0 1.1E-75 2.3E-80 647.0 26.1 303 432-913 1-307 (312)
6 cd01491 Ube1_repeat1 Ubiquitin 100.0 2.6E-70 5.6E-75 597.3 26.8 285 15-399 1-285 (286)
7 cd01484 E1-2_like Ubiquitin ac 100.0 1.6E-63 3.5E-68 531.5 22.0 176 432-614 1-176 (234)
8 KOG2015 NEDD8-activating compl 100.0 2.4E-59 5.2E-64 491.9 21.5 345 421-978 31-398 (422)
9 cd01488 Uba3_RUB Ubiquitin act 100.0 3.6E-58 7.7E-63 502.4 19.8 249 432-886 1-259 (291)
10 KOG2014 SMT3/SUMO-activating c 100.0 1E-55 2.2E-60 464.2 22.3 315 7-396 5-322 (331)
11 cd01493 APPBP1_RUB Ubiquitin a 100.0 2.8E-55 6.1E-60 504.3 23.9 366 14-395 1-420 (425)
12 KOG2016 NEDD8-activating compl 100.0 5.1E-55 1.1E-59 476.4 14.0 378 11-395 5-516 (523)
13 cd01492 Aos1_SUMO Ubiquitin ac 100.0 9.1E-38 2E-42 327.3 19.8 148 14-163 2-152 (197)
14 cd01485 E1-1_like Ubiquitin ac 100.0 6.6E-37 1.4E-41 321.3 19.5 148 15-164 1-156 (198)
15 PRK08223 hypothetical protein; 100.0 8.5E-37 1.8E-41 331.7 15.6 182 409-600 6-202 (287)
16 TIGR02356 adenyl_thiF thiazole 100.0 1.9E-36 4.1E-41 319.2 13.7 175 412-595 1-178 (202)
17 cd00757 ThiF_MoeB_HesA_family 100.0 1.8E-35 3.8E-40 318.0 16.1 164 412-584 1-166 (228)
18 PRK05690 molybdopterin biosynt 100.0 2.3E-35 5E-40 319.5 13.9 166 410-584 10-178 (245)
19 PRK08328 hypothetical protein; 100.0 4.1E-35 8.9E-40 315.0 12.7 164 411-583 8-172 (231)
20 PRK07411 hypothetical protein; 100.0 7.6E-35 1.7E-39 335.3 13.9 177 410-595 16-196 (390)
21 PRK05597 molybdopterin biosynt 100.0 1.1E-34 2.5E-39 330.2 13.7 179 410-597 6-188 (355)
22 TIGR02355 moeB molybdopterin s 100.0 2.2E-34 4.8E-39 310.4 14.3 166 410-584 2-170 (240)
23 cd01493 APPBP1_RUB Ubiquitin a 100.0 1E-32 2.2E-37 317.8 28.1 186 411-606 1-186 (425)
24 cd01492 Aos1_SUMO Ubiquitin ac 100.0 3.6E-34 7.9E-39 300.1 13.7 151 411-571 2-152 (197)
25 PRK07878 molybdopterin biosynt 100.0 8.8E-33 1.9E-37 319.0 22.9 156 7-164 14-175 (392)
26 cd01491 Ube1_repeat1 Ubiquitin 100.0 8.5E-34 1.8E-38 310.3 13.0 180 412-607 1-182 (286)
27 cd01485 E1-1_like Ubiquitin ac 100.0 1.3E-33 2.8E-38 296.4 12.7 155 412-573 1-157 (198)
28 PRK05600 thiamine biosynthesis 100.0 1.4E-33 2.9E-38 321.9 13.8 177 410-595 19-202 (370)
29 PRK07878 molybdopterin biosynt 100.0 1.8E-33 3.9E-38 324.7 14.8 177 410-595 20-204 (392)
30 PRK12475 thiamine/molybdopteri 100.0 3.5E-33 7.6E-38 315.1 14.6 166 410-584 2-171 (338)
31 PRK05597 molybdopterin biosynt 100.0 2.2E-32 4.8E-37 311.4 20.2 153 9-163 2-160 (355)
32 PRK07688 thiamine/molybdopteri 100.0 7.5E-33 1.6E-37 312.6 14.2 165 410-583 2-170 (339)
33 cd01489 Uba2_SUMO Ubiquitin ac 100.0 1.3E-31 2.8E-36 296.6 18.5 279 35-388 1-285 (312)
34 PRK05690 molybdopterin biosynt 100.0 3E-31 6.5E-36 287.4 18.6 158 6-165 3-166 (245)
35 PRK08223 hypothetical protein; 100.0 3.1E-31 6.7E-36 288.4 17.9 163 12-176 6-174 (287)
36 TIGR02356 adenyl_thiF thiazole 100.0 4.6E-31 1E-35 278.2 15.7 149 15-165 1-155 (202)
37 TIGR03736 PRTRC_ThiF PRTRC sys 100.0 2.3E-31 5E-36 284.5 12.9 161 428-597 9-193 (244)
38 PRK08762 molybdopterin biosynt 100.0 2.9E-31 6.3E-36 305.6 14.5 177 411-596 114-298 (376)
39 COG0476 ThiF Dinucleotide-util 100.0 3.1E-31 6.7E-36 290.0 13.6 166 410-584 8-176 (254)
40 PRK07411 hypothetical protein; 100.0 1.1E-30 2.3E-35 300.9 18.1 158 5-164 8-171 (390)
41 cd00757 ThiF_MoeB_HesA_family 100.0 1.1E-30 2.3E-35 280.9 16.8 150 15-166 1-156 (228)
42 KOG2017 Molybdopterin synthase 100.0 6.8E-32 1.5E-36 288.0 6.6 169 411-588 45-216 (427)
43 PRK08328 hypothetical protein; 100.0 4.3E-30 9.3E-35 276.2 18.0 156 9-166 3-163 (231)
44 PRK14851 hypothetical protein; 100.0 9.1E-31 2E-35 316.8 14.3 167 409-585 22-190 (679)
45 PF09358 UBA_e1_C: Ubiquitin-a 100.0 3E-31 6.5E-36 255.8 6.5 123 891-1013 1-125 (125)
46 cd01488 Uba3_RUB Ubiquitin act 100.0 2.1E-29 4.6E-34 276.0 21.7 264 35-398 1-276 (291)
47 TIGR02355 moeB molybdopterin s 100.0 4E-30 8.7E-35 277.4 15.7 149 13-163 2-156 (240)
48 PRK14852 hypothetical protein; 100.0 1.8E-30 3.8E-35 316.8 14.5 165 409-583 311-477 (989)
49 PRK05600 thiamine biosynthesis 100.0 6.4E-30 1.4E-34 291.7 17.5 156 7-164 13-174 (370)
50 PRK15116 sulfur acceptor prote 100.0 1E-29 2.2E-34 275.8 14.2 164 410-582 10-175 (268)
51 PRK08762 molybdopterin biosynt 100.0 3.9E-28 8.4E-33 279.7 21.7 155 8-164 108-268 (376)
52 cd00755 YgdL_like Family of ac 100.0 8.2E-29 1.8E-33 264.6 13.3 155 420-582 1-156 (231)
53 PRK08644 thiamine biosynthesis 100.0 1.2E-28 2.6E-33 261.2 13.5 163 409-581 7-172 (212)
54 PRK07688 thiamine/molybdopteri 100.0 3.2E-28 6.9E-33 275.0 17.7 151 13-165 2-160 (339)
55 PRK12475 thiamine/molybdopteri 100.0 3.2E-28 6.8E-33 274.9 17.1 151 13-165 2-160 (338)
56 cd01484 E1-2_like Ubiquitin ac 100.0 3.1E-27 6.7E-32 252.7 23.0 227 35-374 1-234 (234)
57 PRK07877 hypothetical protein; 100.0 3.9E-28 8.4E-33 294.3 14.7 160 410-583 87-251 (722)
58 TIGR01408 Ube1 ubiquitin-activ 99.9 1.2E-27 2.5E-32 300.0 18.0 154 12-167 398-564 (1008)
59 PF00899 ThiF: ThiF family; I 99.9 4.2E-28 9.1E-33 239.8 11.1 134 429-571 1-134 (135)
60 COG0476 ThiF Dinucleotide-util 99.9 2E-27 4.4E-32 259.9 16.9 170 8-179 3-180 (254)
61 PTZ00245 ubiquitin activating 99.9 8.2E-28 1.8E-32 250.7 12.8 122 9-133 2-123 (287)
62 TIGR01381 E1_like_apg7 E1-like 99.9 1.5E-27 3.2E-32 279.7 14.2 146 421-572 329-490 (664)
63 PRK15116 sulfur acceptor prote 99.9 3.5E-27 7.6E-32 256.1 15.8 144 8-153 5-153 (268)
64 COG1179 Dinucleotide-utilizing 99.9 1.8E-27 3.8E-32 246.0 11.2 164 409-580 9-173 (263)
65 cd01483 E1_enzyme_family Super 99.9 1.1E-26 2.4E-31 231.9 12.3 133 432-573 1-133 (143)
66 PRK14852 hypothetical protein; 99.9 1.7E-26 3.7E-31 282.1 16.4 153 12-166 311-469 (989)
67 PRK14851 hypothetical protein; 99.9 2E-26 4.3E-31 279.2 16.4 158 7-166 17-180 (679)
68 KOG2015 NEDD8-activating compl 99.9 1.5E-25 3.3E-30 237.2 20.1 273 24-398 31-320 (422)
69 cd01490 Ube1_repeat2 Ubiquitin 99.9 2.4E-25 5.1E-30 255.3 23.2 131 35-167 1-144 (435)
70 cd01486 Apg7 Apg7 is an E1-lik 99.9 2.3E-26 5E-31 249.7 12.8 132 432-571 1-149 (307)
71 KOG2013 SMT3/SUMO-activating c 99.9 2.4E-26 5.1E-31 254.2 12.6 361 26-393 5-418 (603)
72 KOG2017 Molybdopterin synthase 99.9 1.4E-26 3.1E-31 247.5 8.3 171 6-178 37-214 (427)
73 PF00899 ThiF: ThiF family; I 99.9 4.6E-25 1E-29 218.1 16.7 130 32-163 1-134 (135)
74 cd01487 E1_ThiF_like E1_ThiF_l 99.9 1.2E-25 2.6E-30 231.3 13.0 142 432-583 1-145 (174)
75 TIGR03603 cyclo_dehy_ocin bact 99.9 6.1E-26 1.3E-30 253.8 10.4 149 411-583 53-207 (318)
76 PRK08644 thiamine biosynthesis 99.9 6.1E-25 1.3E-29 233.0 15.3 145 13-160 8-157 (212)
77 cd01483 E1_enzyme_family Super 99.9 1.2E-24 2.6E-29 217.3 15.1 129 35-165 1-133 (143)
78 cd00755 YgdL_like Family of ac 99.9 9.5E-25 2.1E-29 233.4 14.8 132 23-156 1-137 (231)
79 TIGR02354 thiF_fam2 thiamine b 99.9 8.6E-25 1.9E-29 229.6 14.2 158 415-582 6-167 (200)
80 PTZ00245 ubiquitin activating 99.9 1.9E-24 4.1E-29 225.7 11.3 115 410-540 6-120 (287)
81 PRK06153 hypothetical protein; 99.9 1.4E-23 3E-28 234.7 12.7 129 423-563 169-300 (393)
82 PRK07877 hypothetical protein; 99.9 8.1E-23 1.8E-27 248.2 16.6 148 9-162 83-235 (722)
83 COG1179 Dinucleotide-utilizing 99.9 1.1E-22 2.3E-27 210.7 12.6 142 10-153 7-153 (263)
84 KOG2014 SMT3/SUMO-activating c 99.9 1.1E-22 2.5E-27 215.1 10.8 154 410-573 11-164 (331)
85 KOG2336 Molybdopterin biosynth 99.9 1.9E-22 4E-27 209.6 10.5 165 411-584 60-240 (422)
86 cd01486 Apg7 Apg7 is an E1-lik 99.9 9.7E-22 2.1E-26 213.8 14.7 129 35-166 1-152 (307)
87 KOG2016 NEDD8-activating compl 99.9 1.9E-22 4E-27 221.9 7.9 188 409-606 6-193 (523)
88 TIGR03603 cyclo_dehy_ocin bact 99.9 1.4E-21 3E-26 218.9 13.6 146 8-166 47-198 (318)
89 cd01487 E1_ThiF_like E1_ThiF_l 99.9 1.9E-21 4.1E-26 200.3 13.5 126 35-163 1-131 (174)
90 TIGR02354 thiF_fam2 thiamine b 99.9 2.8E-21 6E-26 203.1 14.8 139 20-162 8-151 (200)
91 TIGR01381 E1_like_apg7 E1-like 99.9 2.7E-21 6E-26 227.3 15.7 141 23-166 328-492 (664)
92 PF02134 UBACT: Repeat in ubiq 99.8 1E-21 2.3E-26 168.8 5.3 66 817-884 1-66 (67)
93 KOG2018 Predicted dinucleotide 99.8 3.2E-21 6.9E-26 203.7 9.8 158 411-576 55-213 (430)
94 KOG2012 Ubiquitin activating e 99.8 2.5E-20 5.4E-25 217.6 8.2 152 13-166 410-574 (1013)
95 PRK06153 hypothetical protein; 99.8 6.3E-19 1.4E-23 197.5 14.3 126 25-154 168-299 (393)
96 TIGR03736 PRTRC_ThiF PRTRC sys 99.7 7.7E-18 1.7E-22 180.7 12.9 129 31-163 9-151 (244)
97 KOG2018 Predicted dinucleotide 99.7 5.6E-17 1.2E-21 171.8 10.1 138 14-153 55-197 (430)
98 PF10585 UBA_e1_thiolCys: Ubiq 99.6 4.7E-16 1E-20 122.1 1.2 45 575-619 1-45 (45)
99 KOG2336 Molybdopterin biosynth 99.5 2.3E-14 5.1E-19 149.7 9.2 151 11-164 57-228 (422)
100 TIGR03693 ocin_ThiF_like putat 99.5 1E-13 2.2E-18 162.2 9.4 146 411-582 104-260 (637)
101 KOG2337 Ubiquitin activating E 99.4 2.9E-13 6.2E-18 152.2 6.3 190 424-620 334-566 (669)
102 KOG2337 Ubiquitin activating E 99.1 2.5E-10 5.5E-15 128.9 10.2 138 27-167 334-495 (669)
103 TIGR03693 ocin_ThiF_like putat 99.1 7E-10 1.5E-14 130.5 12.9 136 8-159 98-244 (637)
104 PF02134 UBACT: Repeat in ubiq 98.1 1.1E-06 2.5E-11 75.8 2.2 50 716-770 1-50 (67)
105 COG4015 Predicted dinucleotide 97.8 9.4E-05 2E-09 72.9 9.0 121 33-160 18-146 (217)
106 PF08825 E2_bind: E2 binding d 97.6 7E-05 1.5E-09 67.5 3.9 63 927-989 1-75 (84)
107 PRK06718 precorrin-2 dehydroge 97.5 0.0014 3E-08 69.5 13.4 95 30-153 7-101 (202)
108 TIGR03882 cyclo_dehyd_2 bacter 97.4 0.00014 3.1E-09 76.4 5.0 59 422-480 97-160 (193)
109 TIGR01470 cysG_Nterm siroheme 97.4 0.0027 5.9E-08 67.5 13.8 103 31-161 7-109 (205)
110 PF01488 Shikimate_DH: Shikima 97.2 0.00093 2E-08 66.2 7.8 77 30-129 9-85 (135)
111 COG1748 LYS9 Saccharopine dehy 97.2 0.00084 1.8E-08 77.3 7.5 100 431-563 2-101 (389)
112 PRK12549 shikimate 5-dehydroge 97.1 0.0013 2.8E-08 73.6 8.2 77 427-537 124-200 (284)
113 PRK06719 precorrin-2 dehydroge 97.1 0.011 2.3E-07 60.3 13.8 86 30-144 10-95 (157)
114 COG4015 Predicted dinucleotide 97.0 0.0023 5E-08 63.3 7.5 126 430-568 18-146 (217)
115 PF01488 Shikimate_DH: Shikima 97.0 0.0017 3.7E-08 64.3 6.8 79 426-540 8-86 (135)
116 PRK12549 shikimate 5-dehydroge 97.0 0.0027 5.9E-08 70.9 9.2 76 31-127 125-200 (284)
117 PRK06718 precorrin-2 dehydroge 97.0 0.0031 6.8E-08 66.9 9.2 92 427-558 7-98 (202)
118 COG1748 LYS9 Saccharopine dehy 97.0 0.0033 7.1E-08 72.5 9.9 98 34-158 2-104 (389)
119 PF13241 NAD_binding_7: Putati 96.8 0.0024 5.2E-08 60.2 6.2 89 30-153 4-92 (103)
120 PRK05562 precorrin-2 dehydroge 96.8 0.023 5E-07 60.9 14.1 99 30-156 22-120 (223)
121 PF13241 NAD_binding_7: Putati 96.7 0.0031 6.8E-08 59.4 6.1 87 427-559 4-90 (103)
122 PRK06719 precorrin-2 dehydroge 96.6 0.012 2.7E-07 59.8 9.9 85 427-553 10-94 (157)
123 TIGR01470 cysG_Nterm siroheme 96.5 0.0093 2E-07 63.5 8.7 95 428-561 7-101 (205)
124 PRK05562 precorrin-2 dehydroge 96.0 0.02 4.2E-07 61.5 8.1 96 427-561 22-117 (223)
125 PF03435 Saccharop_dh: Sacchar 96.0 0.01 2.2E-07 69.3 6.5 97 433-560 1-97 (386)
126 PRK10637 cysG siroheme synthas 95.7 0.13 2.7E-06 61.7 13.9 99 30-156 9-107 (457)
127 PRK14027 quinate/shikimate deh 95.6 0.031 6.6E-07 62.5 7.9 78 31-127 125-202 (283)
128 COG1648 CysG Siroheme synthase 95.6 0.073 1.6E-06 56.8 10.1 100 30-157 9-108 (210)
129 PRK14027 quinate/shikimate deh 95.3 0.036 7.7E-07 62.0 6.8 78 428-537 125-202 (283)
130 PRK12548 shikimate 5-dehydroge 95.3 0.042 9.1E-07 61.7 7.4 84 428-537 124-207 (289)
131 PRK07819 3-hydroxybutyryl-CoA 95.1 0.048 1E-06 61.1 7.4 171 431-625 6-185 (286)
132 TIGR01809 Shik-DH-AROM shikima 95.0 0.055 1.2E-06 60.5 7.3 75 31-128 123-199 (282)
133 COG0373 HemA Glutamyl-tRNA red 95.0 0.041 8.8E-07 64.0 6.3 76 30-131 175-250 (414)
134 PF00056 Ldh_1_N: lactate/mala 94.9 0.077 1.7E-06 53.0 7.4 74 34-128 1-78 (141)
135 TIGR01809 Shik-DH-AROM shikima 94.8 0.056 1.2E-06 60.4 6.8 76 428-537 123-198 (282)
136 TIGR03882 cyclo_dehyd_2 bacter 94.8 0.1 2.2E-06 55.0 8.3 86 20-161 92-178 (193)
137 PRK12548 shikimate 5-dehydroge 94.7 0.099 2.2E-06 58.7 8.6 60 31-106 124-183 (289)
138 COG0169 AroE Shikimate 5-dehyd 94.7 0.088 1.9E-06 58.6 8.0 74 32-127 125-198 (283)
139 PRK00258 aroE shikimate 5-dehy 94.7 0.097 2.1E-06 58.4 8.4 74 31-128 121-194 (278)
140 PRK00258 aroE shikimate 5-dehy 94.6 0.081 1.7E-06 59.1 7.3 36 427-467 120-155 (278)
141 KOG4169 15-hydroxyprostaglandi 94.6 0.054 1.2E-06 57.4 5.4 84 428-537 3-91 (261)
142 PRK14106 murD UDP-N-acetylmura 94.5 0.14 3E-06 61.2 9.5 95 31-151 3-97 (450)
143 PF01113 DapB_N: Dihydrodipico 94.4 0.073 1.6E-06 51.9 5.8 99 432-566 2-102 (124)
144 PF05237 MoeZ_MoeB: MoeZ/MoeB 94.4 0.03 6.4E-07 50.8 2.7 41 355-395 23-64 (84)
145 COG0373 HemA Glutamyl-tRNA red 94.3 0.053 1.1E-06 63.1 5.2 75 427-540 175-249 (414)
146 PF03446 NAD_binding_2: NAD bi 94.3 0.1 2.2E-06 53.4 6.6 111 34-157 2-123 (163)
147 PRK07066 3-hydroxybutyryl-CoA 94.2 0.15 3.2E-06 58.0 8.5 169 431-623 8-180 (321)
148 PRK14106 murD UDP-N-acetylmura 94.2 0.093 2E-06 62.6 7.1 36 428-469 3-38 (450)
149 PRK13940 glutamyl-tRNA reducta 94.2 0.081 1.8E-06 62.3 6.4 76 30-130 178-253 (414)
150 COG0569 TrkA K+ transport syst 94.1 0.17 3.7E-06 54.6 8.5 96 431-559 1-97 (225)
151 COG1648 CysG Siroheme synthase 94.1 0.083 1.8E-06 56.3 5.9 95 427-561 9-104 (210)
152 cd05291 HicDH_like L-2-hydroxy 94.1 0.14 2.9E-06 58.1 8.0 72 34-128 1-77 (306)
153 PRK12749 quinate/shikimate deh 94.1 0.19 4.1E-06 56.4 9.0 80 31-127 122-204 (288)
154 PF03435 Saccharop_dh: Sacchar 94.1 0.17 3.7E-06 59.1 9.0 90 36-151 1-96 (386)
155 PF00070 Pyr_redox: Pyridine n 94.0 0.057 1.2E-06 48.1 3.8 31 432-468 1-31 (80)
156 PRK13940 glutamyl-tRNA reducta 94.0 0.073 1.6E-06 62.6 5.7 76 427-540 178-253 (414)
157 cd01065 NAD_bind_Shikimate_DH 93.9 0.1 2.2E-06 52.5 5.9 36 428-468 17-52 (155)
158 PF02826 2-Hacid_dh_C: D-isome 93.8 0.016 3.6E-07 60.1 -0.1 93 425-536 31-126 (178)
159 PRK05808 3-hydroxybutyryl-CoA 93.7 0.29 6.4E-06 54.6 9.6 163 431-623 4-179 (282)
160 PRK10637 cysG siroheme synthas 93.6 0.18 3.9E-06 60.4 8.0 93 427-558 9-101 (457)
161 PLN00203 glutamyl-tRNA reducta 93.3 0.14 3E-06 61.9 6.6 75 31-128 264-338 (519)
162 COG0169 AroE Shikimate 5-dehyd 93.3 0.2 4.3E-06 55.8 7.2 75 428-537 124-198 (283)
163 PF14732 UAE_UbL: Ubiquitin/SU 93.2 0.056 1.2E-06 49.3 2.3 48 931-978 7-56 (87)
164 PRK06130 3-hydroxybutyryl-CoA 93.1 0.37 8.1E-06 54.5 9.4 32 431-468 5-36 (311)
165 COG0569 TrkA K+ transport syst 93.0 0.6 1.3E-05 50.5 10.3 105 34-166 1-113 (225)
166 PRK09260 3-hydroxybutyryl-CoA 93.0 0.089 1.9E-06 58.9 4.1 162 431-617 2-173 (288)
167 cd01080 NAD_bind_m-THF_DH_Cycl 93.0 0.12 2.6E-06 53.2 4.6 34 427-466 41-75 (168)
168 cd05213 NAD_bind_Glutamyl_tRNA 93.0 0.36 7.8E-06 54.8 8.9 83 31-139 176-258 (311)
169 cd01065 NAD_bind_Shikimate_DH 92.9 0.36 7.7E-06 48.4 7.9 35 31-65 17-51 (155)
170 PRK00066 ldh L-lactate dehydro 92.8 0.32 6.9E-06 55.3 8.2 76 32-128 5-82 (315)
171 PF02254 TrkA_N: TrkA-N domain 92.8 1.1 2.5E-05 42.5 10.9 87 36-150 1-93 (116)
172 TIGR01035 hemA glutamyl-tRNA r 92.7 0.3 6.5E-06 57.8 8.1 36 30-65 177-212 (417)
173 PRK05476 S-adenosyl-L-homocyst 92.6 0.25 5.4E-06 58.2 7.1 38 427-470 209-246 (425)
174 PRK04148 hypothetical protein; 92.5 1 2.2E-05 44.6 10.0 89 32-151 16-107 (134)
175 cd05311 NAD_bind_2_malic_enz N 92.5 0.1 2.2E-06 56.5 3.4 38 427-469 22-61 (226)
176 PRK04148 hypothetical protein; 92.3 0.71 1.5E-05 45.6 8.6 91 429-558 16-106 (134)
177 cd00300 LDH_like L-lactate deh 92.2 0.99 2.1E-05 51.0 11.1 71 36-128 1-75 (300)
178 PRK08293 3-hydroxybutyryl-CoA 92.2 0.94 2E-05 50.7 10.9 33 431-469 4-36 (287)
179 PF10585 UBA_e1_thiolCys: Ubiq 92.1 0.13 2.9E-06 40.8 2.8 23 660-682 23-45 (45)
180 PRK05708 2-dehydropantoate 2-r 92.1 0.68 1.5E-05 52.4 9.7 33 33-66 2-34 (305)
181 PLN02602 lactate dehydrogenase 91.9 0.45 9.8E-06 54.8 8.0 73 34-128 38-114 (350)
182 cd05290 LDH_3 A subgroup of L- 91.8 0.6 1.3E-05 52.9 8.8 71 35-128 1-77 (307)
183 KOG4169 15-hydroxyprostaglandi 91.8 0.43 9.3E-06 50.8 6.9 62 31-113 3-65 (261)
184 PF00670 AdoHcyase_NAD: S-aden 91.8 0.31 6.7E-06 49.6 5.7 91 426-562 19-111 (162)
185 PF00056 Ldh_1_N: lactate/mala 91.7 0.49 1.1E-05 47.2 7.1 75 431-538 1-78 (141)
186 cd05213 NAD_bind_Glutamyl_tRNA 91.7 0.36 7.7E-06 54.8 6.9 81 428-547 176-256 (311)
187 cd05293 LDH_1 A subgroup of L- 91.7 0.5 1.1E-05 53.6 8.0 74 33-128 3-80 (312)
188 cd05311 NAD_bind_2_malic_enz N 91.7 0.2 4.4E-06 54.2 4.6 38 30-67 22-61 (226)
189 COG0111 SerA Phosphoglycerate 91.7 0.18 4E-06 57.4 4.4 90 427-536 139-232 (324)
190 cd05291 HicDH_like L-2-hydroxy 91.6 0.37 8.1E-06 54.5 6.9 34 431-468 1-34 (306)
191 PF03446 NAD_binding_2: NAD bi 91.5 0.24 5.2E-06 50.6 4.8 31 431-467 2-32 (163)
192 PF03807 F420_oxidored: NADP o 91.4 1.3 2.7E-05 40.7 9.1 78 35-139 1-81 (96)
193 cd00401 AdoHcyase S-adenosyl-L 91.3 0.63 1.4E-05 54.7 8.4 36 428-469 200-235 (413)
194 PRK14192 bifunctional 5,10-met 91.1 0.31 6.8E-06 54.4 5.5 34 427-466 156-190 (283)
195 PRK00066 ldh L-lactate dehydro 91.0 0.51 1.1E-05 53.7 7.2 75 430-537 6-81 (315)
196 PTZ00082 L-lactate dehydrogena 90.7 0.87 1.9E-05 52.0 8.7 79 31-127 4-82 (321)
197 PRK08410 2-hydroxyacid dehydro 90.7 0.4 8.6E-06 54.5 6.0 87 427-536 142-231 (311)
198 cd05290 LDH_3 A subgroup of L- 90.7 0.57 1.2E-05 53.1 7.2 32 432-467 1-32 (307)
199 PLN02819 lysine-ketoglutarate 90.7 0.56 1.2E-05 60.9 7.8 105 428-561 567-679 (1042)
200 PRK15469 ghrA bifunctional gly 90.6 0.25 5.5E-06 56.1 4.2 35 427-467 133-167 (312)
201 PRK13243 glyoxylate reductase; 90.6 0.34 7.3E-06 55.6 5.2 35 427-467 147-181 (333)
202 cd01078 NAD_bind_H4MPT_DH NADP 90.6 1 2.2E-05 47.3 8.5 78 30-128 25-106 (194)
203 cd01078 NAD_bind_H4MPT_DH NADP 90.5 0.65 1.4E-05 48.8 6.9 83 427-540 25-108 (194)
204 PRK09599 6-phosphogluconate de 90.5 0.81 1.8E-05 51.6 8.2 112 35-157 2-123 (301)
205 PRK00141 murD UDP-N-acetylmura 90.4 0.92 2E-05 54.7 9.0 95 26-151 8-103 (473)
206 TIGR00507 aroE shikimate 5-deh 90.3 0.81 1.8E-05 50.8 7.9 34 428-467 115-148 (270)
207 PTZ00117 malate dehydrogenase; 90.2 0.75 1.6E-05 52.4 7.7 35 32-66 4-38 (319)
208 PRK06487 glycerate dehydrogena 90.2 0.42 9.1E-06 54.4 5.6 35 427-467 145-179 (317)
209 TIGR00936 ahcY adenosylhomocys 90.1 0.62 1.4E-05 54.6 7.0 37 428-470 193-229 (406)
210 PRK01710 murD UDP-N-acetylmura 89.9 1.5 3.2E-05 52.7 10.2 97 29-151 10-106 (458)
211 PRK07574 formate dehydrogenase 89.9 0.32 7E-06 56.7 4.4 35 427-467 189-223 (385)
212 PRK06197 short chain dehydroge 89.8 0.62 1.3E-05 52.4 6.5 37 426-468 12-49 (306)
213 PRK00045 hemA glutamyl-tRNA re 89.7 0.5 1.1E-05 56.0 5.9 73 31-129 180-252 (423)
214 PF01118 Semialdhyde_dh: Semia 89.7 0.62 1.3E-05 45.1 5.6 110 432-575 1-112 (121)
215 PRK15438 erythronate-4-phospha 89.6 0.57 1.2E-05 54.4 6.1 87 427-536 113-206 (378)
216 PRK06932 glycerate dehydrogena 89.5 0.54 1.2E-05 53.5 5.7 35 427-467 144-178 (314)
217 cd01075 NAD_bind_Leu_Phe_Val_D 89.5 1.9 4.1E-05 45.7 9.6 36 30-66 25-60 (200)
218 PRK11880 pyrroline-5-carboxyla 89.5 1.2 2.6E-05 49.2 8.4 34 431-467 3-36 (267)
219 TIGR02992 ectoine_eutC ectoine 89.2 1.2 2.5E-05 51.0 8.2 75 33-129 129-204 (326)
220 PRK01438 murD UDP-N-acetylmura 89.2 1.5 3.3E-05 52.7 9.7 94 31-151 14-107 (480)
221 PRK05854 short chain dehydroge 89.2 0.82 1.8E-05 51.8 6.9 35 428-468 12-47 (313)
222 PF01210 NAD_Gly3P_dh_N: NAD-d 89.1 0.98 2.1E-05 45.9 6.8 104 432-565 1-106 (157)
223 PRK08618 ornithine cyclodeamin 89.1 1.2 2.6E-05 50.9 8.2 146 356-540 49-203 (325)
224 PLN00203 glutamyl-tRNA reducta 89.1 0.54 1.2E-05 56.9 5.6 35 428-467 264-298 (519)
225 PRK07531 bifunctional 3-hydrox 89.0 2 4.3E-05 52.1 10.5 157 431-617 5-172 (495)
226 PRK07063 short chain dehydroge 89.0 1 2.2E-05 49.1 7.4 64 427-515 4-68 (260)
227 PLN02545 3-hydroxybutyryl-CoA 89.0 2.2 4.9E-05 47.9 10.2 33 431-469 5-37 (295)
228 PF01113 DapB_N: Dihydrodipico 88.9 1.5 3.3E-05 42.7 7.6 94 35-153 2-98 (124)
229 TIGR00507 aroE shikimate 5-deh 88.9 1.3 2.8E-05 49.2 8.1 72 32-128 116-187 (270)
230 PRK00048 dihydrodipicolinate r 88.8 1.2 2.6E-05 49.1 7.7 128 431-613 2-131 (257)
231 PF02254 TrkA_N: TrkA-N domain 88.8 1.2 2.5E-05 42.4 6.7 85 433-552 1-85 (116)
232 PRK07819 3-hydroxybutyryl-CoA 88.8 1.6 3.4E-05 49.0 8.8 33 34-67 6-38 (286)
233 PRK09242 tropinone reductase; 88.7 1.3 2.9E-05 48.1 8.1 65 427-516 6-71 (257)
234 PRK06197 short chain dehydroge 88.7 1.3 2.8E-05 49.8 8.1 42 23-65 6-48 (306)
235 PLN03139 formate dehydrogenase 88.7 0.4 8.7E-06 55.9 4.0 35 427-467 196-230 (386)
236 PRK00257 erythronate-4-phospha 88.6 0.51 1.1E-05 55.0 4.8 35 427-467 113-147 (381)
237 PF02558 ApbA: Ketopantoate re 88.6 0.43 9.4E-06 47.7 3.7 29 433-467 1-29 (151)
238 TIGR01759 MalateDH-SF1 malate 88.5 0.89 1.9E-05 51.9 6.6 76 34-128 4-88 (323)
239 cd05191 NAD_bind_amino_acid_DH 88.4 0.53 1.1E-05 42.7 3.8 39 427-470 20-58 (86)
240 PRK09496 trkA potassium transp 88.4 1.8 3.8E-05 51.7 9.4 88 31-144 229-322 (453)
241 PRK07831 short chain dehydroge 88.3 1.5 3.2E-05 48.0 8.0 34 428-467 15-50 (262)
242 PRK06436 glycerate dehydrogena 88.1 0.49 1.1E-05 53.5 4.2 36 427-468 119-154 (303)
243 PRK05808 3-hydroxybutyryl-CoA 88.1 2.8 6E-05 46.8 10.1 33 34-67 4-36 (282)
244 PRK06130 3-hydroxybutyryl-CoA 88.1 2.7 5.9E-05 47.5 10.2 32 34-66 5-36 (311)
245 PRK14619 NAD(P)H-dependent gly 88.0 1.1 2.3E-05 50.9 6.8 33 430-468 4-36 (308)
246 cd05293 LDH_1 A subgroup of L- 88.0 1.3 2.8E-05 50.3 7.4 34 430-467 3-36 (312)
247 PRK03562 glutathione-regulated 88.0 1.5 3.2E-05 54.7 8.6 88 33-148 400-493 (621)
248 PRK14175 bifunctional 5,10-met 88.0 0.78 1.7E-05 51.2 5.5 35 427-467 155-190 (286)
249 PLN03209 translocon at the inn 87.9 1.8 4E-05 52.7 9.0 82 429-538 79-168 (576)
250 PRK07062 short chain dehydroge 87.8 1.6 3.4E-05 47.8 7.9 63 428-515 6-69 (265)
251 PF00070 Pyr_redox: Pyridine n 87.7 1 2.2E-05 40.0 5.2 54 35-100 1-54 (80)
252 COG0300 DltE Short-chain dehyd 87.6 1.6 3.4E-05 48.3 7.5 64 428-517 4-68 (265)
253 PRK03659 glutathione-regulated 87.6 1.6 3.5E-05 54.2 8.6 90 33-150 400-495 (601)
254 PLN02819 lysine-ketoglutarate 87.5 1.4 3.1E-05 57.3 8.2 95 32-152 568-678 (1042)
255 PRK08251 short chain dehydroge 87.5 1.8 3.9E-05 46.7 8.0 62 430-516 2-64 (248)
256 COG1086 Predicted nucleoside-d 87.4 1.9 4.1E-05 51.9 8.5 87 423-536 243-332 (588)
257 PF02558 ApbA: Ketopantoate re 87.4 2.1 4.5E-05 42.7 7.9 85 36-141 1-89 (151)
258 PRK07634 pyrroline-5-carboxyla 87.3 2.9 6.2E-05 45.4 9.5 81 32-139 3-86 (245)
259 PF10727 Rossmann-like: Rossma 87.3 2.3 5.1E-05 41.7 7.8 83 429-552 9-91 (127)
260 PRK11908 NAD-dependent epimera 87.3 2.1 4.6E-05 49.0 8.8 31 431-467 2-34 (347)
261 PTZ00325 malate dehydrogenase; 87.3 1.2 2.6E-05 50.7 6.7 77 31-128 6-85 (321)
262 COG0771 MurD UDP-N-acetylmuram 87.1 1.6 3.5E-05 51.7 7.7 92 31-150 5-97 (448)
263 PRK07502 cyclohexadienyl dehyd 87.1 2.6 5.7E-05 47.6 9.3 34 33-66 6-40 (307)
264 COG0039 Mdh Malate/lactate deh 87.1 1 2.2E-05 50.8 5.8 33 34-66 1-34 (313)
265 cd05191 NAD_bind_amino_acid_DH 87.1 1 2.3E-05 40.7 4.9 37 30-66 20-56 (86)
266 PLN02602 lactate dehydrogenase 87.0 1.3 2.9E-05 51.0 6.9 33 431-467 38-70 (350)
267 PLN02206 UDP-glucuronate decar 86.9 1.7 3.7E-05 51.8 8.0 33 429-467 118-151 (442)
268 TIGR00872 gnd_rel 6-phosphoglu 86.8 1.5 3.2E-05 49.5 7.1 111 35-156 2-121 (298)
269 PRK07530 3-hydroxybutyryl-CoA 86.8 6.1 0.00013 44.3 11.9 33 33-66 4-36 (292)
270 PLN02206 UDP-glucuronate decar 86.7 3 6.6E-05 49.8 10.0 103 32-159 118-238 (442)
271 PRK07576 short chain dehydroge 86.7 1 2.2E-05 49.5 5.6 37 426-468 5-42 (264)
272 cd01075 NAD_bind_Leu_Phe_Val_D 86.7 0.63 1.4E-05 49.3 3.8 36 427-468 25-60 (200)
273 TIGR01757 Malate-DH_plant mala 86.7 2.1 4.6E-05 49.9 8.3 76 34-128 45-129 (387)
274 PRK02705 murD UDP-N-acetylmura 86.6 2.9 6.2E-05 50.1 9.8 93 34-151 1-97 (459)
275 PLN02545 3-hydroxybutyryl-CoA 86.6 2.9 6.4E-05 46.9 9.3 33 34-67 5-37 (295)
276 PRK06141 ornithine cyclodeamin 86.5 1.9 4.2E-05 49.0 7.8 77 30-129 122-199 (314)
277 PRK07340 ornithine cyclodeamin 86.5 1.9 4.1E-05 48.8 7.7 75 31-129 123-198 (304)
278 PRK10537 voltage-gated potassi 86.5 1.8 4E-05 50.7 7.7 97 29-150 236-333 (393)
279 PF03807 F420_oxidored: NADP o 86.4 0.56 1.2E-05 43.0 2.9 90 432-559 1-92 (96)
280 PLN02350 phosphogluconate dehy 86.4 1.5 3.1E-05 52.9 7.0 117 34-157 7-136 (493)
281 PLN02928 oxidoreductase family 86.4 0.73 1.6E-05 53.2 4.3 35 427-467 156-190 (347)
282 PRK06522 2-dehydropantoate 2-r 86.4 4.5 9.8E-05 45.3 10.7 30 35-65 2-31 (304)
283 cd00401 AdoHcyase S-adenosyl-L 86.3 3.6 7.7E-05 48.5 10.0 60 4-67 170-235 (413)
284 PF02826 2-Hacid_dh_C: D-isome 86.3 0.63 1.4E-05 48.3 3.5 43 25-68 28-70 (178)
285 cd00300 LDH_like L-lactate deh 86.3 1.2 2.5E-05 50.4 5.9 72 433-538 1-75 (300)
286 TIGR00872 gnd_rel 6-phosphoglu 86.3 0.72 1.6E-05 52.0 4.2 32 432-469 2-33 (298)
287 PRK07066 3-hydroxybutyryl-CoA 86.0 1.4 3.1E-05 50.2 6.3 108 34-157 8-122 (321)
288 PRK05335 tRNA (uracil-5-)-meth 85.8 0.68 1.5E-05 54.5 3.7 34 430-469 2-35 (436)
289 TIGR02992 ectoine_eutC ectoine 85.7 2 4.4E-05 49.1 7.5 146 355-539 49-204 (326)
290 PRK15469 ghrA bifunctional gly 85.7 2.8 6E-05 47.7 8.5 42 23-65 126-167 (312)
291 PRK05708 2-dehydropantoate 2-r 85.7 0.7 1.5E-05 52.3 3.7 33 430-468 2-34 (305)
292 cd01338 MDH_choloroplast_like 85.7 1.1 2.3E-05 51.3 5.1 74 34-128 3-87 (322)
293 PF02737 3HCDH_N: 3-hydroxyacy 85.7 0.76 1.6E-05 47.9 3.7 161 432-617 1-170 (180)
294 cd05296 GH4_P_beta_glucosidase 85.6 1.9 4.2E-05 50.9 7.4 109 35-163 2-117 (419)
295 PF02737 3HCDH_N: 3-hydroxyacy 85.6 1.5 3.3E-05 45.7 5.9 33 35-68 1-33 (180)
296 PRK07680 late competence prote 85.6 4.6 0.0001 44.8 10.1 78 35-139 2-82 (273)
297 TIGR00465 ilvC ketol-acid redu 85.4 3.2 7E-05 47.2 8.8 33 31-64 1-33 (314)
298 PRK12749 quinate/shikimate deh 85.3 0.79 1.7E-05 51.5 3.9 83 428-537 122-204 (288)
299 PRK03562 glutathione-regulated 85.3 0.98 2.1E-05 56.3 5.1 89 430-553 400-488 (621)
300 PRK09599 6-phosphogluconate de 85.3 1.1 2.4E-05 50.5 5.1 118 432-565 2-123 (301)
301 PLN02306 hydroxypyruvate reduc 85.3 0.84 1.8E-05 53.4 4.2 35 427-467 162-197 (386)
302 PRK11790 D-3-phosphoglycerate 85.3 1.1 2.3E-05 53.0 5.1 35 427-467 148-182 (409)
303 PRK05867 short chain dehydroge 85.2 1.5 3.3E-05 47.6 6.0 34 428-467 7-41 (253)
304 KOG0069 Glyoxylate/hydroxypyru 85.2 3.7 8E-05 46.8 9.0 85 28-144 157-244 (336)
305 PRK04308 murD UDP-N-acetylmura 85.2 3.9 8.4E-05 48.8 9.9 94 31-151 3-96 (445)
306 PRK08618 ornithine cyclodeamin 85.1 2.6 5.7E-05 48.1 8.0 78 32-131 126-204 (325)
307 PRK06523 short chain dehydroge 85.1 2.1 4.6E-05 46.5 7.1 76 427-510 6-83 (260)
308 PRK00094 gpsA NAD(P)H-dependen 85.1 4.8 0.0001 45.6 10.2 31 35-66 3-33 (325)
309 PRK04690 murD UDP-N-acetylmura 85.0 2.9 6.2E-05 50.3 8.7 92 31-151 6-98 (468)
310 PRK09496 trkA potassium transp 84.9 2.9 6.4E-05 49.8 8.7 95 428-555 229-323 (453)
311 PRK06249 2-dehydropantoate 2-r 84.9 1.6 3.6E-05 49.4 6.3 34 33-67 5-38 (313)
312 PRK12826 3-ketoacyl-(acyl-carr 84.9 2.1 4.6E-05 46.0 6.9 36 428-469 4-40 (251)
313 PRK07417 arogenate dehydrogena 84.9 3.5 7.7E-05 45.9 8.8 31 35-66 2-32 (279)
314 PRK09186 flagellin modificatio 84.8 2.3 5.1E-05 46.0 7.2 33 428-466 2-35 (256)
315 PRK05854 short chain dehydroge 84.8 4.2 9.1E-05 46.0 9.5 59 30-108 11-70 (313)
316 PRK07679 pyrroline-5-carboxyla 84.8 4.5 9.8E-05 45.1 9.6 82 32-140 2-86 (279)
317 PTZ00431 pyrroline carboxylate 84.8 1.9 4.1E-05 47.6 6.5 38 429-468 2-39 (260)
318 PRK06223 malate dehydrogenase; 84.7 6.2 0.00013 44.6 10.8 32 34-65 3-34 (307)
319 PRK12490 6-phosphogluconate de 84.6 2.7 5.9E-05 47.4 7.8 32 35-67 2-33 (299)
320 PRK06476 pyrroline-5-carboxyla 84.6 2.4 5.3E-05 46.6 7.3 23 432-454 2-24 (258)
321 PRK12921 2-dehydropantoate 2-r 84.5 3.3 7.1E-05 46.5 8.4 30 35-65 2-31 (305)
322 PF13460 NAD_binding_10: NADH( 84.5 8 0.00017 39.5 10.7 93 36-159 1-103 (183)
323 PRK09242 tropinone reductase; 84.4 5.1 0.00011 43.5 9.7 63 30-112 6-69 (257)
324 PRK15409 bifunctional glyoxyla 84.4 1.3 2.9E-05 50.5 5.2 34 427-466 142-176 (323)
325 cd05292 LDH_2 A subgroup of L- 84.4 3.5 7.5E-05 46.8 8.5 31 35-65 2-33 (308)
326 PRK08217 fabG 3-ketoacyl-(acyl 84.3 1.9 4.1E-05 46.4 6.2 34 428-467 3-37 (253)
327 PF02056 Glyco_hydro_4: Family 84.3 2 4.2E-05 44.9 5.9 110 432-568 1-114 (183)
328 PRK07478 short chain dehydroge 84.3 1.8 4E-05 46.9 6.1 34 428-467 4-38 (254)
329 TIGR01915 npdG NADPH-dependent 84.1 6.8 0.00015 42.0 10.3 84 35-139 2-88 (219)
330 PRK13304 L-aspartate dehydroge 84.1 3 6.4E-05 46.3 7.7 89 431-559 2-90 (265)
331 PRK06928 pyrroline-5-carboxyla 84.1 5.4 0.00012 44.5 9.8 80 34-139 2-84 (277)
332 PRK07340 ornithine cyclodeamin 84.0 1.5 3.2E-05 49.7 5.3 135 356-538 49-197 (304)
333 cd01339 LDH-like_MDH L-lactate 84.0 8.2 0.00018 43.6 11.3 31 36-66 1-31 (300)
334 PRK05476 S-adenosyl-L-homocyst 84.0 3.7 8E-05 48.6 8.7 37 30-67 209-245 (425)
335 PRK04663 murD UDP-N-acetylmura 83.9 2.6 5.5E-05 50.3 7.6 92 30-151 3-97 (438)
336 PRK14619 NAD(P)H-dependent gly 83.9 4.8 0.0001 45.6 9.4 33 33-66 4-36 (308)
337 PLN02780 ketoreductase/ oxidor 83.8 3 6.5E-05 47.5 7.8 60 430-514 53-113 (320)
338 PRK06035 3-hydroxyacyl-CoA deh 83.8 3 6.5E-05 46.8 7.6 33 34-67 4-36 (291)
339 PRK12384 sorbitol-6-phosphate 83.7 3.6 7.8E-05 44.7 8.1 33 430-468 2-35 (259)
340 PTZ00142 6-phosphogluconate de 83.7 2.4 5.2E-05 50.9 7.1 116 34-156 2-129 (470)
341 PRK06141 ornithine cyclodeamin 83.7 2.4 5.3E-05 48.2 6.9 141 356-538 48-198 (314)
342 PF00106 adh_short: short chai 83.6 1.3 2.7E-05 44.7 4.1 61 431-515 1-62 (167)
343 PRK07067 sorbitol dehydrogenas 83.6 1.9 4.1E-05 46.9 5.8 36 428-469 4-40 (257)
344 KOG0024 Sorbitol dehydrogenase 83.6 3.1 6.6E-05 46.8 7.2 36 429-469 169-204 (354)
345 PF01210 NAD_Gly3P_dh_N: NAD-d 83.5 5.3 0.00012 40.5 8.7 104 35-157 1-106 (157)
346 PRK14618 NAD(P)H-dependent gly 83.5 5.6 0.00012 45.4 9.9 32 34-66 5-36 (328)
347 PRK02472 murD UDP-N-acetylmura 83.5 3.6 7.9E-05 49.0 8.7 94 31-151 3-97 (447)
348 TIGR01035 hemA glutamyl-tRNA r 83.5 0.98 2.1E-05 53.5 3.8 36 427-467 177-212 (417)
349 COG1893 ApbA Ketopantoate redu 83.5 3.1 6.6E-05 47.2 7.6 23 431-453 1-23 (307)
350 TIGR00873 gnd 6-phosphoglucona 83.2 3 6.5E-05 50.1 7.7 116 35-156 1-126 (467)
351 PRK12491 pyrroline-5-carboxyla 83.2 7.9 0.00017 43.1 10.6 80 33-140 2-84 (272)
352 PRK11154 fadJ multifunctional 83.1 1.3 2.7E-05 56.2 4.8 163 431-623 310-486 (708)
353 PRK06057 short chain dehydroge 83.1 1.6 3.5E-05 47.4 5.1 37 427-469 4-41 (255)
354 COG1063 Tdh Threonine dehydrog 83.1 4.3 9.3E-05 46.9 8.7 97 432-558 171-267 (350)
355 PRK07062 short chain dehydroge 83.1 6.1 0.00013 43.1 9.7 59 31-109 6-65 (265)
356 PRK05442 malate dehydrogenase; 83.1 1.7 3.7E-05 49.7 5.3 32 34-65 5-43 (326)
357 TIGR00518 alaDH alanine dehydr 83.0 2.2 4.8E-05 49.7 6.3 35 31-66 165-199 (370)
358 PRK08291 ectoine utilization p 83.0 3.2 6.8E-05 47.6 7.5 145 355-538 52-206 (330)
359 PRK08291 ectoine utilization p 83.0 4.1 8.9E-05 46.7 8.5 75 33-129 132-207 (330)
360 PRK08293 3-hydroxybutyryl-CoA 82.9 8.6 0.00019 43.0 10.8 32 34-66 4-35 (287)
361 PF01118 Semialdhyde_dh: Semia 82.9 7.7 0.00017 37.4 9.1 93 35-151 1-95 (121)
362 PLN03209 translocon at the inn 82.8 7.6 0.00016 47.5 10.9 34 31-65 78-112 (576)
363 PRK02006 murD UDP-N-acetylmura 82.7 4.2 9.1E-05 49.3 8.9 94 31-150 5-101 (498)
364 cd05296 GH4_P_beta_glucosidase 82.6 2.9 6.4E-05 49.4 7.2 111 431-568 1-114 (419)
365 PTZ00431 pyrroline carboxylate 82.6 5.7 0.00012 43.8 9.2 74 32-140 2-78 (260)
366 PTZ00082 L-lactate dehydrogena 82.6 1.2 2.6E-05 50.8 3.9 36 428-468 4-39 (321)
367 PLN02166 dTDP-glucose 4,6-dehy 82.6 4 8.7E-05 48.7 8.4 33 430-468 120-153 (436)
368 PLN02427 UDP-apiose/xylose syn 82.6 2.6 5.7E-05 49.1 6.8 35 427-467 11-47 (386)
369 PRK11730 fadB multifunctional 82.6 1.4 3.1E-05 55.8 4.9 170 431-625 314-491 (715)
370 PRK05866 short chain dehydroge 82.4 2.5 5.5E-05 47.3 6.4 34 428-467 38-72 (293)
371 PRK06940 short chain dehydroge 82.4 2.7 5.9E-05 46.5 6.6 32 430-468 2-33 (275)
372 PRK05479 ketol-acid reductoiso 82.4 3.9 8.4E-05 46.8 7.8 98 29-157 13-110 (330)
373 PRK08605 D-lactate dehydrogena 82.4 1.4 3.1E-05 50.5 4.4 35 427-467 143-178 (332)
374 PRK06249 2-dehydropantoate 2-r 82.3 1.2 2.6E-05 50.5 3.7 34 430-469 5-38 (313)
375 PRK08655 prephenate dehydrogen 82.2 2.5 5.5E-05 50.4 6.6 31 432-468 2-33 (437)
376 PRK10537 voltage-gated potassi 82.2 3.9 8.4E-05 48.0 7.9 37 429-471 239-275 (393)
377 PRK06522 2-dehydropantoate 2-r 82.2 1.3 2.8E-05 49.7 3.9 32 431-468 1-32 (304)
378 PTZ00117 malate dehydrogenase; 82.1 1.3 2.8E-05 50.5 3.9 35 429-468 4-38 (319)
379 PRK07063 short chain dehydroge 82.1 5.9 0.00013 43.1 9.0 35 30-65 4-39 (260)
380 PRK13302 putative L-aspartate 82.0 2.9 6.4E-05 46.5 6.6 88 428-558 4-95 (271)
381 PRK03659 glutathione-regulated 82.0 3.1 6.8E-05 51.7 7.5 89 430-553 400-488 (601)
382 TIGR01763 MalateDH_bact malate 81.9 13 0.00027 42.2 11.7 32 34-65 2-33 (305)
383 PF00106 adh_short: short chai 81.8 6.1 0.00013 39.6 8.4 59 34-111 1-60 (167)
384 cd00650 LDH_MDH_like NAD-depen 81.8 4 8.6E-05 45.1 7.5 71 36-127 1-78 (263)
385 TIGR02853 spore_dpaA dipicolin 81.8 1.3 2.7E-05 49.8 3.6 35 427-467 148-182 (287)
386 TIGR01771 L-LDH-NAD L-lactate 81.8 2.7 5.9E-05 47.4 6.3 68 38-128 1-73 (299)
387 PRK14620 NAD(P)H-dependent gly 81.7 9.3 0.0002 43.5 10.8 31 35-66 2-32 (326)
388 PRK12550 shikimate 5-dehydroge 81.7 1.5 3.2E-05 48.9 4.0 34 430-468 122-155 (272)
389 PRK11880 pyrroline-5-carboxyla 81.7 7 0.00015 43.1 9.5 32 34-65 3-36 (267)
390 COG1893 ApbA Ketopantoate redu 81.7 5.3 0.00011 45.3 8.6 84 34-144 1-92 (307)
391 PRK06139 short chain dehydroge 81.7 2.4 5.3E-05 48.5 6.0 35 427-467 4-39 (330)
392 PLN02240 UDP-glucose 4-epimera 81.7 9.7 0.00021 43.5 11.0 34 31-65 3-37 (352)
393 PRK13403 ketol-acid reductoiso 81.6 1.3 2.9E-05 50.0 3.7 36 425-466 11-46 (335)
394 PRK07531 bifunctional 3-hydrox 81.5 7.5 0.00016 47.2 10.4 33 34-67 5-37 (495)
395 PRK03803 murD UDP-N-acetylmura 81.5 4.8 0.0001 48.1 8.6 124 33-187 6-129 (448)
396 TIGR00065 ftsZ cell division p 81.3 6.3 0.00014 45.5 9.1 113 24-155 8-140 (349)
397 PRK10669 putative cation:proto 81.3 6.6 0.00014 48.4 9.9 34 33-67 417-450 (558)
398 PRK12939 short chain dehydroge 81.3 3 6.4E-05 44.9 6.2 33 428-466 5-38 (250)
399 TIGR00036 dapB dihydrodipicoli 81.3 3 6.6E-05 46.2 6.4 97 432-565 3-102 (266)
400 KOG0069 Glyoxylate/hydroxypyru 81.3 0.78 1.7E-05 52.1 1.7 92 426-561 158-253 (336)
401 PLN02688 pyrroline-5-carboxyla 81.2 5.6 0.00012 43.8 8.4 24 431-454 1-24 (266)
402 PRK12480 D-lactate dehydrogena 81.2 1.4 3.1E-05 50.4 3.8 36 427-468 143-178 (330)
403 PLN02166 dTDP-glucose 4,6-dehy 81.2 7.3 0.00016 46.5 9.9 103 32-159 119-239 (436)
404 cd05211 NAD_bind_Glu_Leu_Phe_V 81.1 1.5 3.2E-05 47.2 3.7 38 427-469 20-57 (217)
405 TIGR01327 PGDH D-3-phosphoglyc 81.0 1.7 3.6E-05 53.1 4.6 35 427-467 135-169 (525)
406 cd00762 NAD_bind_malic_enz NAD 81.0 1.1 2.3E-05 49.1 2.5 45 426-470 21-70 (254)
407 PLN03075 nicotianamine synthas 81.0 56 0.0012 36.9 16.1 55 411-469 103-159 (296)
408 PRK07576 short chain dehydroge 81.0 5.2 0.00011 43.9 8.1 39 27-66 3-42 (264)
409 PRK07774 short chain dehydroge 80.9 2.2 4.8E-05 46.0 5.1 35 428-468 4-39 (250)
410 TIGR03589 PseB UDP-N-acetylglu 80.9 12 0.00026 42.6 11.3 36 31-66 2-39 (324)
411 PF03949 Malic_M: Malic enzyme 80.8 1.9 4.1E-05 47.2 4.4 103 29-151 21-138 (255)
412 PRK07634 pyrroline-5-carboxyla 80.7 4.1 8.9E-05 44.2 7.1 26 429-454 3-28 (245)
413 PRK07792 fabG 3-ketoacyl-(acyl 80.7 2.8 6.1E-05 47.2 6.0 36 426-467 8-44 (306)
414 PRK05875 short chain dehydroge 80.7 4.2 9E-05 44.7 7.3 34 428-467 5-39 (276)
415 PRK06398 aldose dehydrogenase; 80.7 3.8 8.3E-05 44.8 6.9 74 427-510 3-78 (258)
416 PLN02350 phosphogluconate dehy 80.7 6.4 0.00014 47.5 9.2 123 431-565 7-136 (493)
417 cd01337 MDH_glyoxysomal_mitoch 80.7 3.6 7.8E-05 46.7 6.8 73 35-128 2-77 (310)
418 PRK06720 hypothetical protein; 80.7 3.9 8.5E-05 42.1 6.5 36 427-468 13-49 (169)
419 PRK06476 pyrroline-5-carboxyla 80.7 6.5 0.00014 43.2 8.7 23 35-57 2-24 (258)
420 PRK14982 acyl-ACP reductase; P 80.6 1.4 3.1E-05 50.4 3.6 37 427-468 152-190 (340)
421 TIGR02622 CDP_4_6_dhtase CDP-g 80.6 5 0.00011 46.0 8.1 35 31-66 2-37 (349)
422 PRK00676 hemA glutamyl-tRNA re 80.6 1.4 3.1E-05 50.3 3.5 35 426-465 170-204 (338)
423 PRK08125 bifunctional UDP-gluc 80.6 4.9 0.00011 50.6 8.6 42 422-469 307-350 (660)
424 PLN02427 UDP-apiose/xylose syn 80.5 7.9 0.00017 45.1 9.9 37 29-65 10-47 (386)
425 PRK06125 short chain dehydroge 80.5 4.1 8.9E-05 44.3 7.1 35 428-468 5-40 (259)
426 TIGR00137 gid_trmFO tRNA:m(5)U 80.4 1.5 3.3E-05 51.8 3.8 32 431-468 1-32 (433)
427 cd01080 NAD_bind_m-THF_DH_Cycl 80.4 2.4 5.2E-05 43.7 4.8 35 30-65 41-76 (168)
428 cd00704 MDH Malate dehydrogena 80.4 1.7 3.8E-05 49.5 4.2 33 34-66 1-40 (323)
429 cd05211 NAD_bind_Glu_Leu_Phe_V 80.4 2.2 4.8E-05 45.8 4.7 38 30-67 20-57 (217)
430 PRK08229 2-dehydropantoate 2-r 80.3 11 0.00025 43.0 10.9 32 34-66 3-34 (341)
431 cd05298 GH4_GlvA_pagL_like Gly 80.3 4.7 0.0001 48.0 7.8 109 431-569 1-114 (437)
432 PRK07856 short chain dehydroge 80.3 4.6 0.0001 43.8 7.3 78 428-512 4-83 (252)
433 PRK00045 hemA glutamyl-tRNA re 80.2 1.5 3.3E-05 52.0 3.7 36 428-468 180-215 (423)
434 PF10727 Rossmann-like: Rossma 80.2 3.7 7.9E-05 40.3 5.8 83 31-141 8-90 (127)
435 PRK05717 oxidoreductase; Valid 80.2 2.3 5E-05 46.2 5.0 36 427-468 7-43 (255)
436 PRK13529 malate dehydrogenase; 80.2 0.83 1.8E-05 55.1 1.5 117 426-561 291-416 (563)
437 PLN03129 NADP-dependent malic 80.1 0.75 1.6E-05 55.6 1.1 109 426-561 317-435 (581)
438 PRK15059 tartronate semialdehy 80.1 5.6 0.00012 44.7 8.1 108 35-156 2-121 (292)
439 PRK13301 putative L-aspartate 80.0 2.3 5.1E-05 46.8 4.8 116 33-158 2-128 (267)
440 PRK12367 short chain dehydroge 80.0 2 4.3E-05 46.9 4.4 39 424-468 8-47 (245)
441 TIGR03589 PseB UDP-N-acetylglu 79.9 3.9 8.4E-05 46.6 6.8 37 428-468 2-39 (324)
442 PRK07831 short chain dehydroge 79.9 8.2 0.00018 42.0 9.2 35 30-65 14-50 (262)
443 PRK00676 hemA glutamyl-tRNA re 79.9 2.3 4.9E-05 48.7 4.8 38 30-67 171-208 (338)
444 PRK03369 murD UDP-N-acetylmura 79.9 5.6 0.00012 48.2 8.5 89 32-151 11-99 (488)
445 TIGR03466 HpnA hopanoid-associ 79.9 3.9 8.4E-05 46.0 6.8 31 432-468 2-33 (328)
446 PLN03096 glyceraldehyde-3-phos 79.9 2.2 4.7E-05 49.7 4.7 132 429-576 59-195 (395)
447 PRK13018 cell division protein 79.8 9.9 0.00021 44.3 10.0 107 30-155 25-151 (378)
448 COG1250 FadB 3-hydroxyacyl-CoA 79.8 1.6 3.5E-05 49.2 3.6 32 431-468 4-35 (307)
449 PRK08251 short chain dehydroge 79.8 9.6 0.00021 41.0 9.6 61 33-113 2-63 (248)
450 PRK07814 short chain dehydroge 79.7 3.7 8E-05 44.9 6.4 35 428-468 8-43 (263)
451 PRK00048 dihydrodipicolinate r 79.7 8.2 0.00018 42.6 9.1 34 34-67 2-37 (257)
452 PRK09330 cell division protein 79.6 6.2 0.00013 46.0 8.3 101 31-151 11-132 (384)
453 PLN00106 malate dehydrogenase 79.3 4.2 9.1E-05 46.4 6.8 74 32-126 17-93 (323)
454 TIGR02440 FadJ fatty oxidation 79.3 2.7 5.8E-05 53.2 5.7 165 431-625 305-483 (699)
455 TIGR00715 precor6x_red precorr 79.2 11 0.00024 41.6 9.8 91 34-151 1-97 (256)
456 PRK06035 3-hydroxyacyl-CoA deh 79.2 1.8 3.9E-05 48.5 3.8 33 431-469 4-36 (291)
457 PRK07530 3-hydroxybutyryl-CoA 79.2 1.8 4E-05 48.5 3.8 32 431-468 5-36 (292)
458 TIGR01202 bchC 2-desacetyl-2-h 79.2 5.4 0.00012 45.0 7.6 92 429-564 144-235 (308)
459 PRK08374 homoserine dehydrogen 79.2 6.1 0.00013 45.4 8.1 109 431-560 3-121 (336)
460 TIGR01850 argC N-acetyl-gamma- 79.2 4.2 9.1E-05 46.9 6.8 98 431-562 1-100 (346)
461 PRK12550 shikimate 5-dehydroge 79.1 2.7 5.9E-05 46.8 5.1 33 33-65 122-154 (272)
462 PRK13403 ketol-acid reductoiso 79.1 2.5 5.3E-05 48.0 4.7 38 27-65 10-47 (335)
463 PRK08507 prephenate dehydrogen 79.1 8.5 0.00018 42.7 9.1 31 35-65 2-33 (275)
464 PRK00421 murC UDP-N-acetylmura 79.0 4.1 8.9E-05 48.9 7.0 88 32-151 6-95 (461)
465 PRK12826 3-ketoacyl-(acyl-carr 79.0 6.7 0.00015 42.1 8.1 36 30-66 3-39 (251)
466 PLN02688 pyrroline-5-carboxyla 79.0 11 0.00023 41.6 9.8 77 35-139 2-81 (266)
467 TIGR02437 FadB fatty oxidation 79.0 3.3 7.1E-05 52.5 6.3 33 431-469 314-346 (714)
468 PRK03806 murD UDP-N-acetylmura 78.9 6.9 0.00015 46.6 8.8 123 31-187 4-126 (438)
469 cd00762 NAD_bind_malic_enz NAD 78.9 1.8 4E-05 47.3 3.5 39 29-67 21-69 (254)
470 PRK07231 fabG 3-ketoacyl-(acyl 78.8 7.6 0.00016 41.7 8.4 74 30-126 2-88 (251)
471 PRK14188 bifunctional 5,10-met 78.8 3.8 8.3E-05 46.1 6.1 77 427-563 155-232 (296)
472 PRK00811 spermidine synthase; 78.8 3.9 8.4E-05 45.8 6.2 93 10-126 56-157 (283)
473 PRK12409 D-amino acid dehydrog 78.7 1.8 4E-05 50.8 3.9 33 431-469 2-34 (410)
474 PRK07679 pyrroline-5-carboxyla 78.7 3.8 8.2E-05 45.7 6.1 93 430-559 3-97 (279)
475 TIGR01181 dTDP_gluc_dehyt dTDP 78.7 12 0.00025 41.7 10.2 31 35-65 1-33 (317)
476 PRK08643 acetoin reductase; Va 78.7 4.9 0.00011 43.6 6.9 33 430-468 2-35 (256)
477 PRK07889 enoyl-(acyl carrier p 78.6 5.2 0.00011 43.7 7.1 36 427-468 4-42 (256)
478 PRK12748 3-ketoacyl-(acyl-carr 78.5 4 8.7E-05 44.3 6.2 35 428-468 3-40 (256)
479 TIGR02279 PaaC-3OHAcCoADH 3-hy 78.4 8.1 0.00017 46.9 9.2 104 34-157 6-123 (503)
480 PRK06181 short chain dehydroge 78.4 4.4 9.6E-05 44.1 6.5 31 431-467 2-33 (263)
481 PRK00436 argC N-acetyl-gamma-g 78.2 5.7 0.00012 45.8 7.5 35 526-561 65-99 (343)
482 PRK10669 putative cation:proto 78.2 4.5 9.8E-05 49.8 7.2 80 430-544 417-496 (558)
483 PRK11908 NAD-dependent epimera 78.2 16 0.00035 41.7 11.3 32 34-65 2-34 (347)
484 PRK09880 L-idonate 5-dehydroge 78.1 13 0.00028 42.5 10.5 34 32-65 169-202 (343)
485 PRK07825 short chain dehydroge 78.1 3.5 7.5E-05 45.3 5.6 35 428-468 3-38 (273)
486 cd01076 NAD_bind_1_Glu_DH NAD( 78.0 9 0.0002 41.5 8.6 38 29-66 27-64 (227)
487 PF02719 Polysacc_synt_2: Poly 78.0 1 2.2E-05 50.4 1.3 41 433-478 1-42 (293)
488 PRK13243 glyoxylate reductase; 78.0 10 0.00022 43.6 9.4 37 29-66 146-182 (333)
489 PRK08229 2-dehydropantoate 2-r 77.9 1.9 4.2E-05 49.4 3.6 32 431-468 3-34 (341)
490 PRK14982 acyl-ACP reductase; P 77.8 2.9 6.2E-05 48.0 4.8 36 30-65 152-189 (340)
491 PRK08277 D-mannonate oxidoredu 77.8 3.7 8E-05 45.2 5.7 36 427-468 7-43 (278)
492 PTZ00317 NADP-dependent malic 77.7 1.2 2.7E-05 53.6 1.9 85 371-468 230-340 (559)
493 cd05197 GH4_glycoside_hydrolas 77.6 11 0.00023 44.8 9.7 107 35-163 2-116 (425)
494 PRK08945 putative oxoacyl-(acy 77.6 4.2 9E-05 43.9 5.9 38 426-469 8-46 (247)
495 TIGR02853 spore_dpaA dipicolin 77.5 3 6.4E-05 46.9 4.8 35 30-65 148-182 (287)
496 PRK08265 short chain dehydroge 77.3 3.1 6.7E-05 45.5 4.9 36 427-468 3-39 (261)
497 cd05298 GH4_GlvA_pagL_like Gly 77.3 6.1 0.00013 47.1 7.5 106 35-162 2-115 (437)
498 PRK12827 short chain dehydroge 77.3 5.2 0.00011 42.9 6.6 33 428-466 4-37 (249)
499 PF04321 RmlD_sub_bind: RmlD s 77.3 5.4 0.00012 44.6 6.9 88 431-567 1-106 (286)
500 PRK05872 short chain dehydroge 77.2 5.8 0.00012 44.4 7.1 35 428-468 7-42 (296)
No 1
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-259 Score=2190.13 Aligned_cols=1001 Identities=60% Similarity=1.016 Sum_probs=971.4
Q ss_pred CCCCCchhhhhhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCcc
Q 001747 5 NSNQTDIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDI 84 (1018)
Q Consensus 5 ~~~~~~~~~~~YdRQi~l~G~~~q~~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~di 84 (1018)
+++..++|+++||||++++|.++|+||+.|+|||.|++|||.||||||+|+||+++||+|+..+.++||++|||++++||
T Consensus 9 ~~a~~~IDE~LYSRQLYVlG~eAM~~m~~S~VLisGl~GLGvEIAKNliLaGVksvTlhD~~~~~~~DLssqf~L~E~Di 88 (1013)
T KOG2012|consen 9 NSASQEIDESLYSRQLYVLGHEAMRRMQGSNVLISGLQGLGVEIAKNLILAGVKSVTLHDPRPVQLSDLSSQFYLSEEDI 88 (1013)
T ss_pred CcchhhhhhhhhhhhhhhccHHHHHHHhhCcEEEecCCcccHHHHhhHhhhccceEEeeCCCcccHHhhccceeeeHHhc
Confidence 56677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHhhCCCcEEEEEecCCChhhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEEeeecceeEEEEee
Q 001747 85 GKNRALASVQKLQELNNAVVLSTLTSKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCD 164 (1018)
Q Consensus 85 Gk~ka~a~~~~L~elNp~V~v~~~~~~l~~~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~~~~~G~~G~vf~d 164 (1018)
|++||+++.++|++||++|.|.++++.++++++++|+|||+|+.+++.+.+||++||+++ |.||.++++|++|++|||
T Consensus 89 gknRA~as~~~LaeLN~yV~V~v~t~~~~~e~L~~FqvVVlt~~~le~q~~i~~fch~~~--i~fi~ad~RGLfg~lFCD 166 (1013)
T KOG2012|consen 89 GKNRAEASVEKLAELNNYVPVVVLTGPLTEEFLSDFQVVVLTDASLEEQLKINDFCHSHG--IAFIAADTRGLFGQLFCD 166 (1013)
T ss_pred CCchHHHHHHHHHHhhcceeeEEecCcccHHHHhCCcEEEEecCchHHHHHHHHHHHhcC--eEEEEeccchhhhhhhcc
Confidence 999999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred cCCceEEecCCCCCCcceeeeeeccCCCceeecccccccccccCCeeEEEEeecccccCCCCCccccccCCceeeecccc
Q 001747 165 FGPEFTVVDVDGEDPHTGIIASISNDNPALVSCVDDERLEFQDGDLVVFSEVHGMTELNDGKPRKIKSARPYSFTLEEDT 244 (1018)
Q Consensus 165 ~g~~~~v~d~~ge~p~~~~i~~i~~~~~~~v~~~~~~~~~l~dgd~v~f~ev~gm~~ln~~~~~~i~~~~~~~~~i~~dt 244 (1018)
||++|+|.|.+|++|.+++|++|++++|++||++++.||+|+|||+|+|+||+||+++|+++|++|+++++|+|+| +|+
T Consensus 167 FG~eF~v~D~tGeeP~t~mI~~Is~d~pGvvT~ld~~rH~lEdGd~V~FsEveGm~eLN~~~P~kI~v~~p~sf~I-gdt 245 (1013)
T KOG2012|consen 167 FGEEFTVLDPTGEEPLTGMIASISQDNPGVVTCLDGARHGFEDGDLVTFSEVEGMTELNDCKPRKITVLGPYSFSI-GDT 245 (1013)
T ss_pred CCCceEEeCCCCCcchhhHHhhccCCCCceEEEecCccccCccCCEEEEEeeccccccCCCCceEEEEecCceEEe-ccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 579
Q ss_pred ccccceeecceEEEeeCCeeecCCchHHhhcCCCCcccccCccCCCCChHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Q 001747 245 TNYGTYVKGGIVTQVKQPKVLNFKPLREALEDPGDFLLSDFSKFDRPPPLHLAFQALDKFVSELGRFPVAGSEEDAQKLI 324 (1018)
Q Consensus 245 ~~f~~y~~gg~~~qvk~~~~~~f~sL~~~l~~p~~~~~~d~~k~~~~~~l~~~~~al~~F~~~~gr~P~~~~~~D~~~l~ 324 (1018)
+.|+.|..||+++|||+|++++|+||+++|.+| +++.+|+.|++|++++|++|+||++|.++|||+|.+++++|+++|+
T Consensus 246 ~~f~~y~~GGi~tQVK~Pk~isfKsL~~~L~~P-~fl~~df~k~~rp~~lH~af~AL~~F~~~~Gr~P~p~~e~DA~~l~ 324 (1013)
T KOG2012|consen 246 TEFGEYKKGGIFTQVKVPKTISFKSLREALKEP-EFLISDFAKFDRPPQLHLAFQALHQFQEAHGRLPRPGNEEDAEELV 324 (1013)
T ss_pred cchhhhhcCceeEEeecCceEecccHHHhhcCC-CeeeeccccccccHHHHHHHHHHHHHHHHhCCCCCCCChhhHHHHH
Confidence 999999999999999999999999999999999 7999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCHHHHHHHHhhcccccCchhhhhhhhhhhhHhhhhcCCccccceeeeeecCCCCCCC--CCC
Q 001747 325 SVATNINESLGDGRVEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLYQFFYFDSVESLPTE--PLD 402 (1018)
Q Consensus 325 ~~~~~i~~~~~~~~~~~i~~~~i~~~~~~~~~el~pvaA~iGGiaAQEVIK~iT~kf~Pi~n~~~fD~~e~l~~~--~~~ 402 (1018)
+++..+.+..+. ..++++++|++|+..+++.|.||+|++||+|||||+|++||||+||.||||||++++||++ +++
T Consensus 325 ~l~~~i~~~~~~--~~~vde~Lir~~s~~a~g~L~pm~A~~GG~vaQEvlKa~sgKF~PL~Q~lYfDale~LP~d~~~~~ 402 (1013)
T KOG2012|consen 325 ELARDISEGLGL--EEDVDEKLIRHFSFSARGDLNPMVAFFGGIVAQEVLKACSGKFTPLKQWLYFDALESLPSDNLPPS 402 (1013)
T ss_pred HHHHHhhhhccc--cccchHHHHHHHHHhhccCcchHHHHHhhhhHHHHHHhhccCccchhHheehhhHhhCCCcCCCCC
Confidence 999999887653 4689999999999999999999999999999999999999999999999999999999975 778
Q ss_pred CCCCCCccCchhhhhhhcCHHHHHHHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcc
Q 001747 403 STEFKPINSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFR 482 (1018)
Q Consensus 403 ~~~~~~~~~rydrq~~~~G~~~q~~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~ 482 (1018)
+++++|.++|||.||++||...|+||.+.|+|+|||||||||+|||||+||++||..|.|+|+|||.||.||||||||||
T Consensus 403 e~d~~prgsRYD~qiavfG~~fqeKL~~~~~FlVGaGAIGCE~LKN~am~Gvg~g~~g~ItVTDmD~IEkSNLnRQFLFR 482 (1013)
T KOG2012|consen 403 EEDCQPRGSRYDGQIAVFGAKFQEKLADQKVFLVGAGAIGCELLKNFALMGVGCGNSGKITVTDMDHIEKSNLNRQFLFR 482 (1013)
T ss_pred HHHcccccCccccchhhhchHHHHHHhhCcEEEEccchhhHHHHHhhhheeeccCCCCceEEeccchhhhccccceeecc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHhhCCCCeEEEEecccCCccccccccccccCccEEEEcccChhHHHHHHhhccccccceEeccc
Q 001747 483 DWNIGQAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGT 562 (1018)
Q Consensus 483 ~~diG~~Ka~va~~~l~~~np~~~i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~~~pli~~g~ 562 (1018)
++|||++||++||+++..|||+++|+++..++++++|++|+|+||++.|+|.+||||++||+|++++|+.+.+||++|||
T Consensus 483 ~~dVgk~KSe~AA~A~~~mNp~l~I~a~~~rvgpeTE~If~D~Ff~~ld~VanALDNVdAR~YvD~RCv~~~kPLLESGT 562 (1013)
T KOG2012|consen 483 PWDVGKPKSEVAAAAARGMNPDLNIIALQNRVGPETEHIFNDEFFENLDGVANALDNVDARRYVDRRCVYYRKPLLESGT 562 (1013)
T ss_pred ccccCchHHHHHHHHHHhcCCCceeeehhhccCcccccccchhHHhhhHHHHHhhcchhhhhhhhhhhhhhccchhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccceEEEeCcccccccCCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhccChhhhhhhcCCChhhhhhhhhc
Q 001747 563 LGAKCNTQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSNPVEYTTSMANA 642 (1018)
Q Consensus 563 ~g~~g~~~v~ip~~t~~y~~~~~~~~~~~p~Ct~~~~P~~~~h~i~wAk~~f~~~F~~~~~~~~~~l~~~~~~~~~~~~~ 642 (1018)
+|++|++||++|++||+|++++||||+++|+||+++||+.|||||+|||+.||++|.+.++++|.||++|..+...++..
T Consensus 563 lGTKGntQVvvPhlTEsY~SS~DPPEksiP~CTlknFPn~IeHTiqWAR~eFEg~F~~~~e~vN~yls~p~f~e~sl~~~ 642 (1013)
T KOG2012|consen 563 LGTKGNTQVVVPHLTESYGSSRDPPEKSIPVCTLKSFPNAIEHTIQWARDEFEGLFKQSAENVNKYLSDPVFYETSLKLI 642 (1013)
T ss_pred cCCccceeEEeccccccccccCCCcccCCceeeeccCchHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCchHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998666677778
Q ss_pred CchhHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHhhhCCccccccCCCCCccCCCCCCCccccCCCCC
Q 001747 643 GDAQARDNLERVLECLDKEKCEIFQDCITWARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADP 722 (1018)
Q Consensus 643 ~~~~~~~~l~~~~~~l~~~~~~~~~~ci~~a~~~f~~~F~~~i~~ll~~~p~d~~~~~g~~fWs~~kr~P~pl~fd~~n~ 722 (1018)
+..+.++.|+.+.+.|. .+|.+|+||++|||..|+++|+++|+|||++||+|.+|++|+||||||||+|+|++||.+|+
T Consensus 643 ~~~~~~~~l~~v~~~l~-~rp~~~~dCv~warl~f~~~f~~~ikqLl~~FP~d~~t~~G~pFWs~pKr~P~pl~Fd~n~~ 721 (1013)
T KOG2012|consen 643 GEPQSLETLERVVDCLS-ERPQNWQDCVEWARLHFEKYFHNRIKQLLHNFPPDAKTSDGAPFWSGPKRCPRPLEFDVNDP 721 (1013)
T ss_pred cCcchhHHHHHHHHHhh-cCCccHHHHHHHHHHHHHHHhhHHHHHhhcCCCcccccCCCCcCCCCCCCCCCceeecCCCc
Confidence 88888899999999997 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHcCCCCCCCCCChHHHHHHhhhcCCCCcCCCCCcceecccccccccccCcCcHHHHHHHHHHHHH
Q 001747 723 SHLHFVMAASILRAETFGIPIPDWTNNPKMLAEAVDKVMVPDFLPKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQ 802 (1018)
Q Consensus 723 ~h~~fi~~~a~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 802 (1018)
+|+.||.+||+|||++|||+.. .+.+.++.++..+++|+|+|+++.+|.+++.+....+.+.++.+.+++|...+..
T Consensus 722 ~hl~fv~Aaa~l~a~~~gi~~~---~d~~~~~~~~~~v~~p~f~P~~~~~i~~~~~~~~~~~~s~d~~~~i~~l~~~l~~ 798 (1013)
T KOG2012|consen 722 LHLNFVQAAANLRAEVYGIPGS---QDREALAELLERVIVPEFEPKQKVKIVVEEAELAASSASVDDSAAIDQLNKALPS 798 (1013)
T ss_pred hhHHHHHHHHHHHHHhcCCCcc---cCHHHhhhhHhhcCCCccccccCCeecccccccccccccCCchHHHHHHhhcccc
Confidence 9999999999999999999984 5677899999999999999999999999988877777778888899999998888
Q ss_pred hhhcCCCCCCcCCceeeccCCCCchhHHHHHHhhhhhhccCCCCccHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHh
Q 001747 803 CRKNLPSGFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVL 882 (1018)
Q Consensus 803 ~~~~~~~~~~~~~~~feKDdd~n~hidFv~aasNLRa~ny~I~~~~~~~~k~iAG~IIPAIaTTtA~Vagl~~lEl~K~l 882 (1018)
+.. ..++++.|+.||||||+|+|||||+|||||||.||+||++||+++|+|||+||||||||||+|+||+|+||||++
T Consensus 799 ~~~--~~~~~~~p~~FEKDDDsN~H~dfi~aasnlRA~nY~I~~adr~k~K~IaGkIIPAIATtTa~v~Glv~LElyKv~ 876 (1013)
T KOG2012|consen 799 PSV--LPSFKMKPLDFEKDDDSNFHMDFITAASNLRAQNYSIPPADRLKTKRIAGKIIPAIATTTAAVSGLVCLELYKVV 876 (1013)
T ss_pred ccc--CCCCceeeeeeccccccccchHHHHHHhhhhhhccCCCccchhhhheeeeeEEEEEeehhHHHHHHHHhhhhhhc
Confidence 765 344789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccccccccccccCcccccCCCCCccccc-CCcceeEEeEEEeCCCCcHHHHHHHHHHc-CCceeeeecCCceee
Q 001747 883 DGGHKLEDYRNTFANLALPLFSMAEPVPPKVIKH-RDMSWTVWDRWILKDNPTLRELIQWLKDK-GLNAYSISCGSCLLF 960 (1018)
Q Consensus 883 ~~~~~~~~~rn~f~nl~~p~~~~~ep~~~~~~~~-~~~~~t~Wd~~~~~~~~Tl~~li~~~~~~-~~~~~~i~~g~~~lY 960 (1018)
.|+.+++.|||+|+|||+|+|.++||.++++..+ .+.+||+||||++.+++||++|+++++++ |++++||++|+++||
T Consensus 877 ~G~~~~e~~Kn~flnLAlp~f~~~ep~~~pk~~~~~~~~~tlWdR~~v~g~~tL~~~L~~~~~~~gl~i~mls~G~~lly 956 (1013)
T KOG2012|consen 877 DGKRPVEAYKNTFLNLALPFFSFAEPLAAPKVQYHNDLSWTLWDRWEVKGEPTLREFLDHLEEQHGLEITMLSQGVSLLY 956 (1013)
T ss_pred cCCCchHHhhhhhhcccccceeecccCCCcceeeecccceeeeEEEEecCCCCHHHHHHHHhhhcCceEEEEeccceeeh
Confidence 9988999999999999999999999999877775 45599999999999999999999999988 999999999999999
Q ss_pred cCCCcchhccccCcHHHHHHHhhccCCCCceeEEEEEEEeecCCCCccccCeEEEEe
Q 001747 961 NSMFPRHKERMDKKVVDLAREVAKVELPPYRRHLDVVVACEDDEDNDIDIPLISIYF 1017 (1018)
Q Consensus 961 ~~~~~~~~~~l~~~l~~l~~~~~~~~l~~~~~~l~l~v~~~d~~~~dv~~P~v~~~~ 1017 (1018)
+++||++++||+++++||++.++++++|++++.|+|+++|+|++|+|+++|+|||+|
T Consensus 957 ~~~~~k~~erl~~~v~elv~~~~k~~~~~~~~~lvle~~~~d~~~eDve~P~v~y~f 1013 (1013)
T KOG2012|consen 957 ASFMPKHAERLPLRVTELVRDVTKKKLPPHVRHLVLEVACEDDDDEDVEVPPVRYYF 1013 (1013)
T ss_pred hhhhhHHHHhcCCcHHHHHHHHhcccCCCcceEEEEEEecCCCCCCcCCCCceEEeC
Confidence 999999999999999999999999999999999999999999999999999999986
No 2
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=100.00 E-value=1.5e-230 Score=2116.47 Aligned_cols=1005 Identities=53% Similarity=0.891 Sum_probs=959.2
Q ss_pred chhhhhhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHH
Q 001747 10 DIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRA 89 (1018)
Q Consensus 10 ~~~~~~YdRQi~l~G~~~q~~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka 89 (1018)
++|++||||||++||.++|++|++++|||+|+||||+||||||+|+|||+|||+|++.|+.+||+||||++++|||++||
T Consensus 1 ~id~~lYsRQi~l~G~eaq~kL~~s~VLIiG~gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Ka 80 (1008)
T TIGR01408 1 EIDEALYSRQLYVLGDEAMQKMAKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRA 80 (1008)
T ss_pred CchHhhhhhHHHhcCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCeecHhhCCCceecchHHcCchHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCcEEEEEecCCChhhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEEeeecceeEEEEeecCCce
Q 001747 90 LASVQKLQELNNAVVLSTLTSKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFGPEF 169 (1018)
Q Consensus 90 ~a~~~~L~elNp~V~v~~~~~~l~~~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~~~~~G~~G~vf~d~g~~~ 169 (1018)
++++++|++|||+|+|+++...++++++++||+||+|.++++.+..||++||+++++||||++++.|++|++|+|||++|
T Consensus 81 ea~~~~L~eLNp~V~V~~~~~~l~~e~l~~fdvVV~t~~~~~~~~~in~~cr~~~~~I~fI~~~~~G~~G~vf~D~g~~f 160 (1008)
T TIGR01408 81 EAVVKKLAELNPYVHVSSSSVPFNEEFLDKFQCVVLTEMSLPLQKEINDFCHSQCPPIAFISADVRGLFGSLFCDFGDEF 160 (1008)
T ss_pred HHHHHHHHHHCCCceEEEecccCCHHHHcCCCEEEECCCCHHHHHHHHHHHHHcCCCeEEEEEeecceEEEEEecCCCce
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred EEecCCCCCCcceeeeeeccCCCceeecccccccccccCCeeEEEEeecccccCCCCCccccccCCceeeeccccccccc
Q 001747 170 TVVDVDGEDPHTGIIASISNDNPALVSCVDDERLEFQDGDLVVFSEVHGMTELNDGKPRKIKSARPYSFTLEEDTTNYGT 249 (1018)
Q Consensus 170 ~v~d~~ge~p~~~~i~~i~~~~~~~v~~~~~~~~~l~dgd~v~f~ev~gm~~ln~~~~~~i~~~~~~~~~i~~dt~~f~~ 249 (1018)
.+.|.+|+.|.++.|.+|+++++++|+++++.+|++++||+|.|+||+||+++|++++++|+++++|+|.+ +|++.|++
T Consensus 161 ~~~d~~ge~p~~~~i~~i~~~~~g~Vt~~~~~~h~l~~gd~V~f~ev~gm~~lN~~~~~~i~~~~~~~f~i-~dt~~~~~ 239 (1008)
T TIGR01408 161 EVLDTDGEEPKTGFIASITQANPGIVTCLENHRHKLETGDFVTFREVNGMTGLNDGSPRKITVISPYSFSI-GDTTELGP 239 (1008)
T ss_pred EEEeCCCCCCCcccccccccCCCceEEeecCcccCCcCCCEEEEeecccccccCCCCceeEEecCCceEEe-ccccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 59999999
Q ss_pred eeecceEEEeeCCeeecCCchHHhhcCCCCcccccCccCCCCChHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH
Q 001747 250 YVKGGIVTQVKQPKVLNFKPLREALEDPGDFLLSDFSKFDRPPPLHLAFQALDKFVSELGRFPVAGSEEDAQKLISVATN 329 (1018)
Q Consensus 250 y~~gg~~~qvk~~~~~~f~sL~~~l~~p~~~~~~d~~k~~~~~~l~~~~~al~~F~~~~gr~P~~~~~~D~~~l~~~~~~ 329 (1018)
|.+||+++|+|+|+.++|+||+++|.+| +++.+|+.|+++++.+|++|+||++|.++|||+|.+++++|++++++++++
T Consensus 240 y~~gG~~~qvK~p~~~~Fksl~~~l~~p-~~~~~d~~k~~r~~~lh~~~~aL~~f~~~~g~~P~~~~~~d~~~~~~~a~~ 318 (1008)
T TIGR01408 240 YLHGGIATQVKTPKTVFFKSLREQLKDP-KCLIVDFSKPERPPEIHTAFQALDQFQEKYSRKPNVGCQQDAEELLKLATS 318 (1008)
T ss_pred hhcCceEEEEeccccccccCHHHHHcCC-cccccchhhcCCchhHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 789999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCHHHHHHHHhhcccccCchhhhhhhhhhhhHhhhhcCCccccceeeeeecCCCCCCC-CCCCCCCCC
Q 001747 330 INESLGDGRVEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLYQFFYFDSVESLPTE-PLDSTEFKP 408 (1018)
Q Consensus 330 i~~~~~~~~~~~i~~~~i~~~~~~~~~el~pvaA~iGGiaAQEVIK~iT~kf~Pi~n~~~fD~~e~l~~~-~~~~~~~~~ 408 (1018)
++++.+.. .+.+++++++.|+++++++++||||++||++||||||+|||||+||+||||||++++||.. .+..+++.+
T Consensus 319 i~~~~~~~-~~~lde~li~~~~~~~~geisPv~Ai~GGi~aQEViKaisgKf~Pi~q~~~~D~~e~l~~~~~~~~~~~~~ 397 (1008)
T TIGR01408 319 ISETLEEK-VPDVDAKLVHWLSWTAQGFLSPMAAAVGGVVSQEVLKAVTGKFSPLCQWFYFDSAESLPSLGKPECEEFLP 397 (1008)
T ss_pred HHHhcCCC-cccCCHHHHHHHHHhccccccHHHHHhchHHHHHHHHHhcCCCCCceeeEEeehhhhCCcccCcchhhccc
Confidence 98876542 3569999999999999999999999999999999999999999999999999999999974 334456778
Q ss_pred ccCchhhhhhhcCHHHHHHHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccc
Q 001747 409 INSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 488 (1018)
Q Consensus 409 ~~~rydrq~~~~G~~~q~~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~ 488 (1018)
.++|||||+++||.++|++|+++||+||||||||||++|+||++||+||++|+|+|+|+|+||.|||||||||+++|||+
T Consensus 398 ~~~RYdrqi~l~G~~~Q~kL~~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dIGk 477 (1008)
T TIGR01408 398 RGDRYDAQIAVFGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHIGK 477 (1008)
T ss_pred hhhhhHHHHHHcCHHHHHHHhhCcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCCEecccccCcCcCCChhHcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhCCCCeEEEEecccCCccccccccccccCccEEEEcccChhHHHHHHhhccccccceEecccCCcccc
Q 001747 489 AKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCN 568 (1018)
Q Consensus 489 ~Ka~va~~~l~~~np~~~i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~~~pli~~g~~g~~g~ 568 (1018)
+||++|+++++++||+++|+++..+++++++++|+++||+++|+||+|+||+++|+|++++|+.+++|+|++|+.|++|+
T Consensus 478 ~Ka~vaa~~l~~~Np~v~I~~~~~~v~~~~e~i~~~~f~~~~dvVi~alDn~~aR~~vn~~c~~~~iPli~~gt~G~~G~ 557 (1008)
T TIGR01408 478 PKSYTAADATLKINPQIKIDAHQNRVGPETETIFNDEFYEKLDVVINALDNVEARRYVDSRCLAFLKPLLESGTLGTKGN 557 (1008)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEeecChhhhhhhhHHHhhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeccCceee
Confidence 99999999999999999999999999988888899999999999999999999999999999999999999999999999
Q ss_pred eEEEeCcccccccCCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhccChhhhhhhcCCChhhhhhhhhcCchhHH
Q 001747 569 TQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSNPVEYTTSMANAGDAQAR 648 (1018)
Q Consensus 569 ~~v~ip~~t~~y~~~~~~~~~~~p~Ct~~~~P~~~~h~i~wAk~~f~~~F~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 648 (1018)
+++++|++|+||.|+++|+++++|+||+++||+.++|||+|||++|+++|+..++++|+|+++|..|.+++.+....+..
T Consensus 558 v~v~ip~~te~y~~~~d~~~~~~P~Ctl~~~P~~~~h~i~wa~~~f~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (1008)
T TIGR01408 558 TQVVVPHLTESYGSSRDPPEKEIPFCTLKSFPAAIEHTIQWARDKFEGLFSHKPSLVNKYLSSPSSAEEVLQKIQSGHSR 637 (1008)
T ss_pred EEEEeCCCcCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHhhHHHHHHHhhChHHHHHHHHhcCchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998887777778
Q ss_pred HHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHhhhCCccccccCCCCCccCCCCCCCccccCCCCCchhHHH
Q 001747 649 DNLERVLECLDKEKCEIFQDCITWARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFV 728 (1018)
Q Consensus 649 ~~l~~~~~~l~~~~~~~~~~ci~~a~~~f~~~F~~~i~~ll~~~p~d~~~~~g~~fWs~~kr~P~pl~fd~~n~~h~~fi 728 (1018)
+.|+.+++.|...+|.+|++||+|||.+|+++|+++|+|||++||+|++|++|+||||||||+|+||+||.+|++|++||
T Consensus 638 ~~l~~i~~~l~~~~p~~~~~cv~~a~~~f~~~F~~~I~qLl~~fP~d~~~~~G~~fWs~~kr~P~pl~Fd~~~~~h~~Fi 717 (1008)
T TIGR01408 638 EGLEQIIKLLSKEKPRNFSQCVEWARLKFEKYFNNKALQLLHCFPLDIRTSTGSPFWSSPKRPPSPLKFDLNEPLHLSFI 717 (1008)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCccccCCCCCCCceeeCCCCHHHHHHH
Confidence 89999999998899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCChHHHHHHhhhcCCCCcCCCCCcceecccccccccccCcCcHHHHHHHHHHHHHhhhcCC
Q 001747 729 MAASILRAETFGIPIPDWTNNPKMLAEAVDKVMVPDFLPKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLP 808 (1018)
Q Consensus 729 ~~~a~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 808 (1018)
.+||+|||.+|||+.+.++.+.+.++++++++.+|+|.|+++.++..+|++.+.+....++.+.++.+.++|...... .
T Consensus 718 ~aaanL~A~~ygi~~~~~~~~~~~~~~~~~~~~vp~f~p~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~ 796 (1008)
T TIGR01408 718 QAAAKLYATVYGIPFAEEDLSADALLNILSEVKIPEFKPRSNKKIQTDETARKPDTAPEDDRNAIFQLEKAILSNEAT-K 796 (1008)
T ss_pred HHHHHHHHHHhCCCCccccchHHHHHHHHhcCCCCCCCCCcCceeecChhhhcccccccchHHHHHHHHHHhhccccc-c
Confidence 999999999999998755555588999999999999999999999988876554333334566778888777665431 1
Q ss_pred CCCCcCCceeeccCCCCchhHHHHHHhhhhhhccCCCCccHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhcCCCCc
Q 001747 809 SGFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKL 888 (1018)
Q Consensus 809 ~~~~~~~~~feKDdd~n~hidFv~aasNLRa~ny~I~~~~~~~~k~iAG~IIPAIaTTtA~Vagl~~lEl~K~l~~~~~~ 888 (1018)
.+.++.|++||||||+|+|||||+|||||||+||+||++||+++|+||||||||||||||+||||+|+|+||++++..++
T Consensus 797 ~~~~~~p~~FeKDDd~n~HidFI~AasNLRA~nY~I~~~d~~~~K~iAG~IIPAiATTTA~vaGLv~lEl~Kv~~~~~~i 876 (1008)
T TIGR01408 797 SDFRMAPLSFEKDDDHNGHIDFITAASNLRAKNYSIEPADRFKTKFIAGKIIPAIATSTATVSGLVCLELIKVTDGGYKF 876 (1008)
T ss_pred CCCCCCceeeccCCCcchHHHHHHHHHhhHHHhcCCCcccHHHHHHHhccccchhhhHHHHHHHHHHHHHHHHHhccccH
Confidence 23679999999999999999999999999999999999999999999999999999999999999999999999997789
Q ss_pred ccccccccccccCcccccCCCCCcccccCCcce-eEEeEEEeCCCCcHHHHHHHHHHc-CCceeeeecCCceeecCCCcc
Q 001747 889 EDYRNTFANLALPLFSMAEPVPPKVIKHRDMSW-TVWDRWILKDNPTLRELIQWLKDK-GLNAYSISCGSCLLFNSMFPR 966 (1018)
Q Consensus 889 ~~~rn~f~nl~~p~~~~~ep~~~~~~~~~~~~~-t~Wd~~~~~~~~Tl~~li~~~~~~-~~~~~~i~~g~~~lY~~~~~~ 966 (1018)
+.|||+|+|||+|+|.|+||.||++.++.+..| |+||||++.+++||++|+++|+++ |+++.||++|+++||++++++
T Consensus 877 ~~~kn~f~nlalp~~~~seP~~~~~~~~~~~~~~t~WDr~~i~~~~Tl~~~i~~~~~~~~~~v~~is~g~~~lY~~~~~~ 956 (1008)
T TIGR01408 877 EVYKNCFLNLAIPLFVFTEPTEVRKTKIRNGISFTIWDRWTLHGDFTLLEFINAVKEKYGLEPTMVSQGVKLLYVPVMPG 956 (1008)
T ss_pred HHHhHHHHhhccccccccCCCCCCceeecCceeccceEEEEecCCCcHHHHHHHHHHHhCCeeEEEEcCceEEEeccchh
Confidence 999999999999999999999999998888899 999999999999999999999999 999999999999999999988
Q ss_pred hhccccCcHHHHHHHhhccCCCCceeEEEEEEEeecCCCCccccCeEEEEeC
Q 001747 967 HKERMDKKVVDLAREVAKVELPPYRRHLDVVVACEDDEDNDIDIPLISIYFR 1018 (1018)
Q Consensus 967 ~~~~l~~~l~~l~~~~~~~~l~~~~~~l~l~v~~~d~~~~dv~~P~v~~~~~ 1018 (1018)
+++||+++|+||+++++++++|++++||+|+++|+|++++||++|+|+|+||
T Consensus 957 ~~erl~~~l~el~~~~~k~~~~~~~~~l~~~~~~~d~~~~dv~~P~v~~~~~ 1008 (1008)
T TIGR01408 957 HAERLKLKMHKLVKPTTKKKLPPYRVHLTVSFACDDDGDEDVPGPPVRIYFS 1008 (1008)
T ss_pred hHHhcCCCHHHHHHHhccCCCCCCceEEEEEEEeecCCCCcccCCeEEEEeC
Confidence 8999999999999999999999999999999999999999999999999986
No 3
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=100.00 E-value=4.3e-120 Score=1032.80 Aligned_cols=430 Identities=61% Similarity=1.086 Sum_probs=412.9
Q ss_pred cEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCCeEEEEe
Q 001747 432 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQ 511 (1018)
Q Consensus 432 ~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~~i~~~~ 511 (1018)
||+||||||+|||++|+||++||+||++|+|+|+|+|+||.|||||||||+++|||++||++|+++++++||+++|+++.
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~~ 80 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITALQ 80 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccccccccccccCccEEEEcccChhHHHHHHhhccccccceEecccCCcccceEEEeCcccccccCCCCCCCCCC
Q 001747 512 NRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQA 591 (1018)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~~~pli~~g~~g~~g~~~v~ip~~t~~y~~~~~~~~~~~ 591 (1018)
.+++++++.+|+++||+++|+|++|+||+++|++++++|+.+++|+|++|+.|++|++++++|+.|+||+|..+|+++.+
T Consensus 81 ~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~vn~~C~~~~iPli~~gt~G~~G~v~v~iP~~te~y~~~~~p~~~~~ 160 (435)
T cd01490 81 NRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCVYYRKPLLESGTLGTKGNTQVVIPHLTESYSSSRDPPEKSI 160 (435)
T ss_pred cccChhhhhhhhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEecccceeEEEEEeCCCCCCccCCCCCCCCCC
Confidence 99998888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCChhhHHHHHHHHhhhhhccChhhhhhhcCCChhhhhhhhhcCchhHHHHHHHHHHHhhhhcccchHHHHH
Q 001747 592 PMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSNPVEYTTSMANAGDAQARDNLERVLECLDKEKCEIFQDCIT 671 (1018)
Q Consensus 592 p~Ct~~~~P~~~~h~i~wAk~~f~~~F~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ci~ 671 (1018)
|+||+++||+.++|||+|||++|+++|++.++++|+|+ |++|++
T Consensus 161 P~Ctl~~~P~~~eHcI~wA~~~F~~lF~~~~~~~~~~~------------------------------------~~~c~~ 204 (435)
T cd01490 161 PLCTLKNFPNAIEHTIQWARDEFEGLFKQPPENVNQYL------------------------------------FEDCVR 204 (435)
T ss_pred CCccccCCCCCchHHHHHHHHHHHHHhccchHHHHHhh------------------------------------HHHHHH
Confidence 99999999999999999999999999999887665433 578999
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCccccccCCCCCccCCCCCCCccccCCCCCchhHHHHHHHHHHHHHcCCCCCCCCCChH
Q 001747 672 WARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFVMAASILRAETFGIPIPDWTNNPK 751 (1018)
Q Consensus 672 ~a~~~f~~~F~~~i~~ll~~~p~d~~~~~g~~fWs~~kr~P~pl~fd~~n~~h~~fi~~~a~l~a~~~~i~~~~~~~~~~ 751 (1018)
||+.+|+++|+++|+|||++||+|+++++|++||+|+||+|+|++||.+|++|+.||.++|+|+|++||++
T Consensus 205 ~a~~~f~~~F~~~I~~ll~~~p~d~~~~~g~~fw~~~kr~P~p~~fd~~~~~h~~fv~~~a~l~a~~~~~~--------- 275 (435)
T cd01490 205 WARLLFEKYFNNNIKQLLHNFPPDAVTSDGAPFWSGPKRCPTPLEFDVNNPLHLDFVLAAANLYAEVYGIP--------- 275 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccccccccccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999988752
Q ss_pred HHHHHhhhcCCCCcCCCCCcceecccccccccccCcCcHHHHHHHHHHHHHhhhcCCCCCCcCCceeeccCCCCchhHHH
Q 001747 752 MLAEAVDKVMVPDFLPKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLPSGFRLKPIQFEKDDDTNYHMDMI 831 (1018)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~feKDdd~n~hidFv 831 (1018)
.||||||+|+|||||
T Consensus 276 -----------------------------------------------------------------~FeKDdd~n~h~~fi 290 (435)
T cd01490 276 -----------------------------------------------------------------GFEKDDDTNFHMDFI 290 (435)
T ss_pred -----------------------------------------------------------------ccccCCchhHHHHHH
Confidence 099999999999999
Q ss_pred HHHhhhhhhccCCCCccHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhcCCCCcccccccccccccCcccccCCCCC
Q 001747 832 AGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPP 911 (1018)
Q Consensus 832 ~aasNLRa~ny~I~~~~~~~~k~iAG~IIPAIaTTtA~Vagl~~lEl~K~l~~~~~~~~~rn~f~nl~~p~~~~~ep~~~ 911 (1018)
+|||||||+||+|+++||+++|+||||||||||||||+||||+|+|+||+++++.+++.|||+|+|||+|+|.++||.+|
T Consensus 291 ~a~snlRa~~y~I~~~~~~~~k~iag~IIPAiaTT~aivagl~~~e~~K~~~~~~~~~~~~n~~~nla~p~~~~~~p~~~ 370 (435)
T cd01490 291 TAASNLRARNYSIPPADRHKTKRIAGKIIPAIATTTAAVTGLVCLELYKVVDGKRPLEAYKNAFLNLALPFFAFSEPIPA 370 (435)
T ss_pred HHhhhhHHHHcCCCccCHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHHHhCCccHHHcchHhhhccCCccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999778999999999999999999999999
Q ss_pred ccccc-CCcceeEEeEEEeCCCCcHHHHH-HHHHHc-CCceeeeecCCceeecCCCc--chhccc
Q 001747 912 KVIKH-RDMSWTVWDRWILKDNPTLRELI-QWLKDK-GLNAYSISCGSCLLFNSMFP--RHKERM 971 (1018)
Q Consensus 912 ~~~~~-~~~~~t~Wd~~~~~~~~Tl~~li-~~~~~~-~~~~~~i~~g~~~lY~~~~~--~~~~~l 971 (1018)
++.++ .+.+||+||||++++++||++|+ ++|+++ |+++.||++|+++||+++|| ++++||
T Consensus 371 ~~~~~~~~~~~t~Wdr~~v~~~~t~~~~~~~~~~~~~~~~v~~i~~g~~~ly~~~~~~~~~~~r~ 435 (435)
T cd01490 371 PKVKYAYDEEWTIWDRFEVKGKQTLQELLIDYFKEKYGLEVTMLSQGVSMLYSSFMPPAKLKERL 435 (435)
T ss_pred CccccCCCCEEeeEeEEEEcCCCcHHHHHHHHHHHHhCCeEEEEEeCCeEEEeecCCchhhhhcC
Confidence 98887 67899999999999999999999 999999 99999999999999999987 334553
No 4
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-81 Score=689.23 Aligned_cols=471 Identities=30% Similarity=0.476 Sum_probs=343.4
Q ss_pred HHHHHHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhC
Q 001747 423 KLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSIN 502 (1018)
Q Consensus 423 ~~q~~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~n 502 (1018)
+.++.+.++|||||||||||||+||+||++|+ ++|+|||.|+|++|||||||||+++|||++||.||++.++++|
T Consensus 5 ~~~eai~~~riLvVGaGGIGCELLKnLal~gf-----~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fn 79 (603)
T KOG2013|consen 5 EKHEAIKSGRILVVGAGGIGCELLKNLALTGF-----EEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFN 79 (603)
T ss_pred HHHHHhccCeEEEEecCcccHHHHHHHHHhcC-----CeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhC
Confidence 46788899999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEecccCCccccccccccccCccEEEEcccChhHHHHHHhhccccccceEecccCCcccceEEEeCcccccccC
Q 001747 503 PRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGA 582 (1018)
Q Consensus 503 p~~~i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~~~pli~~g~~g~~g~~~v~ip~~t~~y~~ 582 (1018)
|.+++.+|+..+.+. -|+.+||.+||+|+|||||.+||+|||++|...++|||+|||.|+.|++++++++.||||.|
T Consensus 80 pn~~l~~yhanI~e~---~fnv~ff~qfdiV~NaLDNlaAR~yVNr~C~~a~vPLIesGt~Gf~GQv~~ii~GkTECyeC 156 (603)
T KOG2013|consen 80 PNIKLVPYHANIKEP---KFNVEFFRQFDIVLNALDNLAARRYVNRMCLAASVPLIESGTGGFLGQVQVIIKGKTECYEC 156 (603)
T ss_pred CCCceEeccccccCc---chHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCceecCcccccceEEEEecCCcceecc
Confidence 999999999999754 37789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcccccCCCCChhhHHHHHHH-HhhhhhccChhhh-hhhc-CCChhhhhhhhhcCchhH---HHHHHHHHH
Q 001747 583 SRDPPEKQAPMCTVHSFPHNIDHCLTWARS-EFEGLLEKTPAEV-NAYL-SNPVEYTTSMANAGDAQA---RDNLERVLE 656 (1018)
Q Consensus 583 ~~~~~~~~~p~Ct~~~~P~~~~h~i~wAk~-~f~~~F~~~~~~~-~~~l-~~~~~~~~~~~~~~~~~~---~~~l~~~~~ 656 (1018)
.+.|..+++|+|||||.|+.++|||+|||+ +|.++|+....+- ..-. .+|.. .+.+........ .+..|+ +.
T Consensus 157 ~pK~~~kTypvCTIRstPS~~iHCIVWAK~~lF~qlF~~d~~~q~~~~d~~d~d~-~e~~t~~~~~~~~et~d~~Er-~~ 234 (603)
T KOG2013|consen 157 IPKPVPKTYPVCTIRSTPSEPIHCIVWAKHYLFNQLFGEDDDDQYGRHDNADPDN-CEDMTEEEAEAFRETEDLKER-RE 234 (603)
T ss_pred cCCCCCCcCCceEeecCCCCceeeeeehHhHHHHHHhccccccccccccccCchh-hhccChhhhhhhccchHHHHH-HH
Confidence 999999999999999999999999999995 6999998743321 1111 12221 111110000000 011111 10
Q ss_pred HhhhhcccchHHHHHHH-------HHHHHHHHHHHHHHHhhhCCccccccCCCCCccCCCCCCCccccCCCCCchhHHHH
Q 001747 657 CLDKEKCEIFQDCITWA-------RLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFVM 729 (1018)
Q Consensus 657 ~l~~~~~~~~~~ci~~a-------~~~f~~~F~~~i~~ll~~~p~d~~~~~g~~fWs~~kr~P~pl~fd~~n~~h~~fi~ 729 (1018)
.-++|. ..+|.++|.++|..|+. ++..|.. +++|.||.|...-..-.
T Consensus 235 -----------~i~~~~~~~~~~~~~i~~klF~~dI~yl~~----------~e~~wk~-r~~p~pl~~~~~i~~~~---- 288 (603)
T KOG2013|consen 235 -----------SIVEIDKNLDFGPFKIFNKLFIYDIEYLLG----------MEALWKP-RSRPVPLSIAEVISTSL---- 288 (603)
T ss_pred -----------HHHHHhhccCCChhhhhhHHHHHHHHHHHh----------hhhhccC-CCCCCCcchhhccCCcc----
Confidence 112222 45789999999999996 5778995 77899999875321111
Q ss_pred HHHHHHHHHcCCCCCCCCCChHHHHHHhhhcCCCCcCCCCCcceecccccccccccCcCcHHHHHHHHHHHHHhhhcCCC
Q 001747 730 AASILRAETFGIPIPDWTNNPKMLAEAVDKVMVPDFLPKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLPS 809 (1018)
Q Consensus 730 ~~a~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 809 (1018)
+. +..+.+.+ +. +.. .+...|...+. ...+...++.| ....+.
T Consensus 289 ------------~t---------~ns~~q~~--~~--a~~-----~~~~v~~v~~~----~~vf~~~i~~l---~~~~~~ 331 (603)
T KOG2013|consen 289 ------------ET---------INSIVQSI--TS--AQL-----NDQNVWTVDEG----AVVFRLSIQAL---DLRCPK 331 (603)
T ss_pred ------------cc---------ccchhhhc--cc--ccc-----CCcceeeeccc----cHHHHHHHHHh---cccCCc
Confidence 00 00011100 00 000 01111222111 11112222222 111111
Q ss_pred CCCcCCceeeccCCCCchhHHHHHHhhhhhhccCCCCccHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhcCCCCcc
Q 001747 810 GFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLE 889 (1018)
Q Consensus 810 ~~~~~~~~feKDdd~n~hidFv~aasNLRa~ny~I~~~~~~~~k~iAG~IIPAIaTTtA~Vagl~~lEl~K~l~~~~~~~ 889 (1018)
...---+.|+|||.+ .|+||+||+|+||+.|+||..++|++|.||||||||||||||+|||++|+|.+|+|++ ++.
T Consensus 332 ~~~h~~l~fdKdd~~--~~~FVaaaaNiRa~if~ipmkS~Fdik~mAgnIipaIAtTNAiIagliv~eaiKvl~~--~~~ 407 (603)
T KOG2013|consen 332 ESDHWYLIFDKDDAS--TMEFVAAAANIRAHIFGIPMKSLFDIKQMAGNIIPAIATTNAIIAGLIVTEAIKVLGG--DFD 407 (603)
T ss_pred cCCCceEEEcCCcHH--HHHHHHHHhhhhhhhhccchhhhhchHhHhcccchhhhhhhhHHHHHHHHHHHHHhcc--chh
Confidence 111223899999987 8999999999999999999999999999999999999999999999999999999987 478
Q ss_pred cccccccccccC-------cccccCCCCCcccccCCcceeEEeEEEeC-CCCcHHHHHHHHHH-c-CCceeeee-cCCce
Q 001747 890 DYRNTFANLALP-------LFSMAEPVPPKVIKHRDMSWTVWDRWILK-DNPTLRELIQWLKD-K-GLNAYSIS-CGSCL 958 (1018)
Q Consensus 890 ~~rn~f~nl~~p-------~~~~~ep~~~~~~~~~~~~~t~Wd~~~~~-~~~Tl~~li~~~~~-~-~~~~~~i~-~g~~~ 958 (1018)
+++++|++-... .+.+.+|.|.+..+ +.+. -.+.+. ..+||..|.|.+-+ + ++ .+.|+ ....+
T Consensus 408 ~~~~~f~~~~~n~r~r~l~~~~~~~PNp~C~vC----s~~~-~~l~ln~~~~~~~~L~D~ivk~r~~~-~pdvsll~~~L 481 (603)
T KOG2013|consen 408 DCNMIFLAKRPNPRKRVLLPWALRPPNPNCPVC----SEVP-LVLELNTRKSTLRDLVDKIVKTRLGY-LPDVSLLDDDL 481 (603)
T ss_pred cceeeEEccCCCccceeecccccCCCCCCCccc----cccc-eEEEeccccchHHHHHHHHHHHHhcc-Ccccchhhhhh
Confidence 899999864332 12334444444332 2222 234444 37899999998744 4 77 33443 22455
Q ss_pred eecCCCcchhccccCcHHHHH
Q 001747 959 LFNSMFPRHKERMDKKVVDLA 979 (1018)
Q Consensus 959 lY~~~~~~~~~~l~~~l~~l~ 979 (1018)
+|+. ..+++++|+|+||-
T Consensus 482 i~~~---d~e~n~~k~lsel~ 499 (603)
T KOG2013|consen 482 IDDM---DFEDNLDKTLSELG 499 (603)
T ss_pred cccc---cchhhhhhhHHhhC
Confidence 5553 45799999999993
No 5
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=1.1e-75 Score=647.00 Aligned_cols=303 Identities=39% Similarity=0.666 Sum_probs=280.0
Q ss_pred cEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCCeEEEEe
Q 001747 432 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQ 511 (1018)
Q Consensus 432 ~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~~i~~~~ 511 (1018)
||+||||||+|||++|+|+++|+ |+|+|+|+|+||.|||||||||+++|||++||++|+++++++||+++|+++.
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gv-----g~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~ 75 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGF-----GEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYH 75 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcC-----CeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEe
Confidence 69999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccccccccccccCccEEEEcccChhHHHHHHhhccccccceEecccCCcccceEEEeCcccccccCCCCCCCCCC
Q 001747 512 NRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQA 591 (1018)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~~~pli~~g~~g~~g~~~v~ip~~t~~y~~~~~~~~~~~ 591 (1018)
.++.+. .++.+||+++|+||+|+||.++|++++++|+.+++|+|++|+.|++|++++++|+.|+||.|..+++++++
T Consensus 76 ~~i~~~---~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~~gt~G~~G~v~vi~p~~t~c~~c~~~~~~~~~ 152 (312)
T cd01489 76 ANIKDP---DFNVEFFKQFDLVFNALDNLAARRHVNKMCLAADVPLIESGTTGFLGQVQVIKKGKTECYECQPKETPKTF 152 (312)
T ss_pred ccCCCc---cchHHHHhcCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEecCcceeEEEEEcCCCCCccCCCCCCCCCcC
Confidence 988752 35578999999999999999999999999999999999999999999999999999999999999989999
Q ss_pred CcccccCCCCChhhHHHHHHHHhhhhhccChhhhhhhcCCChhhhhhhhhcCchhHHHHHHHHHHHhhhhcccchHHHHH
Q 001747 592 PMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSNPVEYTTSMANAGDAQARDNLERVLECLDKEKCEIFQDCIT 671 (1018)
Q Consensus 592 p~Ct~~~~P~~~~h~i~wAk~~f~~~F~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ci~ 671 (1018)
|+||++++|+.++|||+|||++|+
T Consensus 153 pictI~~~p~~~~hci~~a~~~f~-------------------------------------------------------- 176 (312)
T cd01489 153 PVCTIRSTPSQPIHCIVWAKSLFF-------------------------------------------------------- 176 (312)
T ss_pred CcceecCCCCCCEeehhHHHHHHH--------------------------------------------------------
Confidence 999999999999999999999874
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCccccccCCCCCccCCCCCCCccccCCCCCchhHHHHHHHHHHHHHcCCCCCCCCCChH
Q 001747 672 WARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFVMAASILRAETFGIPIPDWTNNPK 751 (1018)
Q Consensus 672 ~a~~~f~~~F~~~i~~ll~~~p~d~~~~~g~~fWs~~kr~P~pl~fd~~n~~h~~fi~~~a~l~a~~~~i~~~~~~~~~~ 751 (1018)
+|+++|+++|++|+++ ++||+++| +|+|++|+.
T Consensus 177 ----~~~~~f~~~i~~l~~~----------~~~w~~~~-~p~p~~~~~-------------------------------- 209 (312)
T cd01489 177 ----LFNKVFKDDIERLLSM----------EELWKTRK-PPVPLSWKE-------------------------------- 209 (312)
T ss_pred ----HHHHHHHHHHHHHHhh----------hhhhcCCC-CCCCCCCCC--------------------------------
Confidence 5788999999999974 78999976 999987652
Q ss_pred HHHHHhhhcCCCCcCCCCCcceecccccccccccCcCcHHHHHHHHHHHHHhhhcCCCCCCcCCceeeccCCCCchhHHH
Q 001747 752 MLAEAVDKVMVPDFLPKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLPSGFRLKPIQFEKDDDTNYHMDMI 831 (1018)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~feKDdd~n~hidFv 831 (1018)
++|||||++ ||+||
T Consensus 210 ----------------------------------------------------------------~~fdkDd~~--~~~~v 223 (312)
T cd01489 210 ----------------------------------------------------------------LTFDKDDQD--ALDFV 223 (312)
T ss_pred ----------------------------------------------------------------cCcCCCCHH--HHHHH
Confidence 248999997 99999
Q ss_pred HHHhhhhhhccCCCCccHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhcCCCCcccccccccccccC----cccccC
Q 001747 832 AGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALP----LFSMAE 907 (1018)
Q Consensus 832 ~aasNLRa~ny~I~~~~~~~~k~iAG~IIPAIaTTtA~Vagl~~lEl~K~l~~~~~~~~~rn~f~nl~~p----~~~~~e 907 (1018)
+|+|||||+||+||..+++++|+|||||||||||||||||||+++|++|++.+. .+.|||+|+|+.-+ ++...+
T Consensus 224 ~~~a~lRa~~f~I~~~~~~~~k~i~g~IiPaiatTnaivag~~~~e~~k~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 301 (312)
T cd01489 224 AAAANLRSHVFGIPMKSRFDIKQMAGNIIPAIATTNAIIAGLIVLEALKVLSGD--KEQCRTVFLNLQPNRRKRLLVPCK 301 (312)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhhh--HHHhhhHhhhcccCCCCcEecCCC
Confidence 999999999999999999999999999999999999999999999999999984 68999999997533 355566
Q ss_pred CCCCcc
Q 001747 908 PVPPKV 913 (1018)
Q Consensus 908 p~~~~~ 913 (1018)
|.+|.+
T Consensus 302 ~~~~n~ 307 (312)
T cd01489 302 LDPPNP 307 (312)
T ss_pred CCCcCC
Confidence 665554
No 6
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=100.00 E-value=2.6e-70 Score=597.29 Aligned_cols=285 Identities=58% Similarity=0.974 Sum_probs=279.3
Q ss_pred hhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHH
Q 001747 15 LHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQ 94 (1018)
Q Consensus 15 ~YdRQi~l~G~~~q~~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~ 94 (1018)
+|||||++||.++|+||++++|||+|+||+|+|+||||+|+|||+|||+|++.|+.+||+||||++++|+|++||+++++
T Consensus 1 lYsRQl~~~G~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~ 80 (286)
T cd01491 1 LYSRQLYVLGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQA 80 (286)
T ss_pred CcccceeccCHHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCcEEEEEecCCChhhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEEeeecceeEEEEeecCCceEEecC
Q 001747 95 KLQELNNAVVLSTLTSKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFGPEFTVVDV 174 (1018)
Q Consensus 95 ~L~elNp~V~v~~~~~~l~~~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~~~~~G~~G~vf~d~g~~~~v~d~ 174 (1018)
+|+++||+|+|+++...++++++.+||+||+|.++.+.+.++|++||+++ ||||++++.|++|++|+|||++|.+.|.
T Consensus 81 ~L~eLNp~V~V~~~~~~~~~~~l~~fdvVV~~~~~~~~~~~in~~c~~~~--ipfI~a~~~G~~G~vf~dfg~~f~~~d~ 158 (286)
T cd01491 81 RLAELNPYVPVTVSTGPLTTDELLKFQVVVLTDASLEDQLKINEFCHSPG--IKFISADTRGLFGSIFCDFGDEFTVYDP 158 (286)
T ss_pred HHHHHCCCCEEEEEeccCCHHHHhcCCEEEEecCCHHHHHHHHHHHHHcC--CEEEEEeccccEEEEEecCCCeEEEeCC
Confidence 99999999999999988889999999999999999999999999999999 9999999999999999999999999999
Q ss_pred CCCCCcceeeeeeccCCCceeecccccccccccCCeeEEEEeecccccCCCCCccccccCCceeeeccccccccceeecc
Q 001747 175 DGEDPHTGIIASISNDNPALVSCVDDERLEFQDGDLVVFSEVHGMTELNDGKPRKIKSARPYSFTLEEDTTNYGTYVKGG 254 (1018)
Q Consensus 175 ~ge~p~~~~i~~i~~~~~~~v~~~~~~~~~l~dgd~v~f~ev~gm~~ln~~~~~~i~~~~~~~~~i~~dt~~f~~y~~gg 254 (1018)
+|++|.+++|.+|+++.+++|+++++.||++++||+|.|+||+||+++|+++|++|+++++|+|+| +||+.|++|++||
T Consensus 159 ~ge~p~~~~i~~I~~~~~g~V~~~~~~~h~l~~gd~V~f~ev~gm~~lN~~~~~~v~~~~~~~f~i-~d~~~~~~y~~gG 237 (286)
T cd01491 159 NGEEPKSGMISSISKDNPGVVTCLDETRHGFEDGDYVTFSEVEGMTELNGCEPRKIKVKGPYTFSI-GDTSSFSEYIRGG 237 (286)
T ss_pred CCCcCCccceeeeecCCceEEEEECCcccCCcCCCEEEEeccCcchhhCCCccEEEEECCCCeEEE-CcCcCcCccccCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999 6999999999999
Q ss_pred eEEEeeCCeeecCCchHHhhcCCCCcccccCccCCCCChHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhc
Q 001747 255 IVTQVKQPKVLNFKPLREALEDPGDFLLSDFSKFDRPPPLHLAFQALDKFVSELGRFPVAGSEEDAQKLISVATNINESL 334 (1018)
Q Consensus 255 ~~~qvk~~~~~~f~sL~~~l~~p~~~~~~d~~k~~~~~~l~~~~~al~~F~~~~gr~P~~~~~~D~~~l~~~~~~i~~~~ 334 (1018)
+++|+|
T Consensus 238 ~~~qvK-------------------------------------------------------------------------- 243 (286)
T cd01491 238 IVTQVK-------------------------------------------------------------------------- 243 (286)
T ss_pred EEEEEe--------------------------------------------------------------------------
Confidence 999987
Q ss_pred CCCCCCCCCHHHHHHHHhhcccccCchhhhhhhhhhhhHhhhhcCCccccceeeeeecCCCCCCC
Q 001747 335 GDGRVEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLYQFFYFDSVESLPTE 399 (1018)
Q Consensus 335 ~~~~~~~i~~~~i~~~~~~~~~el~pvaA~iGGiaAQEVIK~iT~kf~Pi~n~~~fD~~e~l~~~ 399 (1018)
++||||++||++||||||+|||||+|++||||||++|+||..
T Consensus 244 -----------------------~~~~~~~~g~~~~q~~~~~~~~~~~p~~q~~~~~~~~~l~~~ 285 (286)
T cd01491 244 -----------------------LSPMAAFFGGLAAQEVLKACSGKFTPLKQWLYFDALECLPED 285 (286)
T ss_pred -----------------------cccHHHHhhhHHHHHHHHHcCCCCCceeeEEEecHHHhcCCC
Confidence 789999999999999999999999999999999999999963
No 7
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=100.00 E-value=1.6e-63 Score=531.48 Aligned_cols=176 Identities=48% Similarity=0.833 Sum_probs=168.6
Q ss_pred cEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCCeEEEEe
Q 001747 432 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQ 511 (1018)
Q Consensus 432 ~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~~i~~~~ 511 (1018)
||+|||+||+|||++|+|+++|+ |+|+|+|+|+||.|||||||||+++|||++||++|+++++++||+++|+++.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gv-----g~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~ 75 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGF-----GQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQ 75 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-----CeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEe
Confidence 69999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccccccccccccCccEEEEcccChhHHHHHHhhccccccceEecccCCcccceEEEeCcccccccCCCCCCCCCC
Q 001747 512 NRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQA 591 (1018)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~~~pli~~g~~g~~g~~~v~ip~~t~~y~~~~~~~~~~~ 591 (1018)
.++.++ ..++++|++++|+||+|+||.++|++++++|+.+++|+|++|+.|++|++++++|+.|+||.|..+|+++.+
T Consensus 76 ~~i~~~--~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~~~iplI~~g~~G~~G~v~vi~p~~t~c~~C~~~~~~~~~ 153 (234)
T cd01484 76 NKVGPE--QDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLIVPLIESGTEGFKGNAQVILPGMTECIECTLYPPQKNF 153 (234)
T ss_pred ccCChh--hhchHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcccCCceEEEEEcCCCCCCcccCCCCCCCCC
Confidence 998653 345678999999999999999999999999999999999999999999999999999999999999998999
Q ss_pred CcccccCCCCChhhHHHHHHHHh
Q 001747 592 PMCTVHSFPHNIDHCLTWARSEF 614 (1018)
Q Consensus 592 p~Ct~~~~P~~~~h~i~wAk~~f 614 (1018)
|+||+++||+.++|||+||+++|
T Consensus 154 p~Cti~~~P~~~~hci~~a~~~~ 176 (234)
T cd01484 154 PMCTIASMPRLPEHCIEWARMLQ 176 (234)
T ss_pred CccccCCCCCCchHHHHHHHHHH
Confidence 99999999999999999999854
No 8
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-59 Score=491.92 Aligned_cols=345 Identities=27% Similarity=0.487 Sum_probs=279.1
Q ss_pred CHHHHHHHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHh
Q 001747 421 GAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATS 500 (1018)
Q Consensus 421 G~~~q~~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~ 500 (1018)
+.+..+.|.+.||+|+||||+|||++|+||++|+ +.++|||||+|++|||||||||+++|||+|||++||+.+++
T Consensus 31 ~~e~l~~l~~~kiLviGAGGLGCElLKnLal~gF-----~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~ 105 (422)
T KOG2015|consen 31 SEENLEFLQDCKILVIGAGGLGCELLKNLALSGF-----RQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNR 105 (422)
T ss_pred CHHHHHHHhhCcEEEEccCcccHHHHHhHHhhcc-----ceeEEEeecceecccchhhhcccccccCchhHHHHHHHHHh
Confidence 5678889999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred hCCCCeEEEEecccCCccccccccccccCccEEEEcccChhHHHHHHhhcccc---c-------cceEecccCCcccceE
Q 001747 501 INPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYF---Q-------KPLLESGTLGAKCNTQ 570 (1018)
Q Consensus 501 ~np~~~i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~---~-------~pli~~g~~g~~g~~~ 570 (1018)
..|+..|.+|..++.+ ++.+|+++||+||++||++++|+|+|.+-+.. + +|+||+|+.|+|||+.
T Consensus 106 Rvp~~~v~~h~~kIqd-----~~~~FYk~F~~iicGLDsIeaRRwIN~mL~~l~~~g~~d~~~iiPlIDGGtEG~KG~ar 180 (422)
T KOG2015|consen 106 RVPGCVVVPHRQKIQD-----KPISFYKRFDLIICGLDSIEARRWINGMLVRLKLEGNYDISSIIPLIDGGTEGFKGHAR 180 (422)
T ss_pred hCCCcEEeeeecchhc-----CCHHHHhhhceEEecccchhHHHHHHHHHHHHHhccCCCccceeeeeecCcccccceeE
Confidence 9999999999999875 45789999999999999999999999887652 2 6999999999999999
Q ss_pred EEeCcccccccCCCC--CCCCCCCcccccCCCCChhhHHHHHHHHhhhhhccChhhhhhhcCCChhhhhhhhhcCchhHH
Q 001747 571 MVIPHLTENYGASRD--PPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSNPVEYTTSMANAGDAQAR 648 (1018)
Q Consensus 571 v~ip~~t~~y~~~~~--~~~~~~p~Ct~~~~P~~~~h~i~wAk~~f~~~F~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 648 (1018)
+++|+.|.|+.|+.| |++.++|+||+.+.|..|||||+|++-
T Consensus 181 vI~Pg~TaCieCtldlyppqvs~P~CTiAntPRlpEHciEyv~l------------------------------------ 224 (422)
T KOG2015|consen 181 VIYPGITACIECTLDLYPPQVSYPMCTIANTPRLPEHCIEYVKL------------------------------------ 224 (422)
T ss_pred EEecCccHHHHhHHhhcCcccCcccceecCCCCCchHhhhhhhh------------------------------------
Confidence 999999999999987 888889999999999999999999554
Q ss_pred HHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHhhhCCccccccCCCCCccCCCCCCCccccCCCCCchhHHH
Q 001747 649 DNLERVLECLDKEKCEIFQDCITWARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFV 728 (1018)
Q Consensus 649 ~~l~~~~~~l~~~~~~~~~~ci~~a~~~f~~~F~~~i~~ll~~~p~d~~~~~g~~fWs~~kr~P~pl~fd~~n~~h~~fi 728 (1018)
++|.+ -.|--..+++
T Consensus 225 ---------------------iqwpe-----------------------------------~~~~g~~~~g--------- 239 (422)
T KOG2015|consen 225 ---------------------IQWPE-----------------------------------LNPFGVPLDG--------- 239 (422)
T ss_pred ---------------------hcchh-----------------------------------hCccCCCCCC---------
Confidence 11211 0000011222
Q ss_pred HHHHHHHHHHcCCCCCCCCCChHHHHHHhhhcCCCCcCCCCCcceecccccccccccCcCcHHHHHHHHHHHHHhhhcCC
Q 001747 729 MAASILRAETFGIPIPDWTNNPKMLAEAVDKVMVPDFLPKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLP 808 (1018)
Q Consensus 729 ~~~a~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 808 (1018)
T Consensus 240 -------------------------------------------------------------------------------- 239 (422)
T KOG2015|consen 240 -------------------------------------------------------------------------------- 239 (422)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCCceeeccCCCCchhHHHHHHhhhhhhccCCCCccHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhcCCCCc
Q 001747 809 SGFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKL 888 (1018)
Q Consensus 809 ~~~~~~~~~feKDdd~n~hidFv~aasNLRa~ny~I~~~~~~~~k~iAG~IIPAIaTTtA~Vagl~~lEl~K~l~~~~~~ 888 (1018)
||. -||+||.--+|.||.-|+|+..++..+.++..+||||+|||||+||+.+|.|++|++....
T Consensus 240 ------------dd~--~hI~wi~er~~eRA~ef~I~gv~~~lvtGvvK~IIPaVasTNA~IAA~Ca~ea~Kl~t~~~-- 303 (422)
T KOG2015|consen 240 ------------DDP--EHIEWIVERSNERANEFNITGVTRRLVTGVVKRIIPAVASTNAVIAAVCATEALKLLTATD-- 303 (422)
T ss_pred ------------CCH--HHHHHHHHHHHHHhhhcccccchHHhhhhhHHhhcchhhhhhHHHHHHHHHHHHHHHHhcc--
Confidence 222 2777777778888888999989999999999999999999999999999999999998642
Q ss_pred ccccccccccccCcccccCCCCCcccccCC-ccee----EEeEEEeCCCCcHHHHHHHHHHc-CCceeeeecC-Cceeec
Q 001747 889 EDYRNTFANLALPLFSMAEPVPPKVIKHRD-MSWT----VWDRWILKDNPTLRELIQWLKDK-GLNAYSISCG-SCLLFN 961 (1018)
Q Consensus 889 ~~~rn~f~nl~~p~~~~~ep~~~~~~~~~~-~~~t----~Wd~~~~~~~~Tl~~li~~~~~~-~~~~~~i~~g-~~~lY~ 961 (1018)
.|-+-|+| |...+..-..+..... ..+. .-..+++....||+++++++.+. ++..+.++.. ...||.
T Consensus 304 -~~~~Nym~-----~n~~eG~ytytf~~er~~nC~vCS~~~~~~~ispt~tl~~vl~~ls~~~~lk~p~~tt~~~~~ly~ 377 (422)
T KOG2015|consen 304 -DPLDNYMN-----YNAEEGIYTYTFLLERDKNCPVCSNLVQNYDISPTVTLEDVLNHLSKSFQLKSPALTTAAGRTLYL 377 (422)
T ss_pred -hhhhhhee-----eecccceeEEEeeeccCCCCccccCCCcccccCCcccHHHHHHHhhhhhccCCchhhhhhcceEee
Confidence 34444444 2222222222111100 0000 01124455678999999999988 9999988643 378999
Q ss_pred CCCc----chhccccCcHHHH
Q 001747 962 SMFP----RHKERMDKKVVDL 978 (1018)
Q Consensus 962 ~~~~----~~~~~l~~~l~~l 978 (1018)
+++| ..++||.++|.||
T Consensus 378 ~~~~~~e~~t~~nl~~~l~~l 398 (422)
T KOG2015|consen 378 SSVPSIEEATRKNLSQSLKEL 398 (422)
T ss_pred cCCcHHHHHhhhhhhhhHHHh
Confidence 9887 4478999999998
No 9
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=3.6e-58 Score=502.38 Aligned_cols=249 Identities=32% Similarity=0.592 Sum_probs=225.7
Q ss_pred cEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCCeEEEEe
Q 001747 432 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQ 511 (1018)
Q Consensus 432 ~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~~i~~~~ 511 (1018)
||+||||||+|||++|+|+++|| |+|+|+|+|+||.|||||||||+++|||++||++|+++++++||+++|+++.
T Consensus 1 kVlVVGaGGlG~eilknLal~Gv-----g~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~ 75 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGF-----RNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHF 75 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-----CeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEe
Confidence 69999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccccccccccccCccEEEEcccChhHHHHHHhhcccc--------ccceEecccCCcccceEEEeCcccccccCC
Q 001747 512 NRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYF--------QKPLLESGTLGAKCNTQMVIPHLTENYGAS 583 (1018)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~--------~~pli~~g~~g~~g~~~v~ip~~t~~y~~~ 583 (1018)
.++.+ ++.+|++++|+||+|+||+++|+++++.|... ++|+|++|+.|++|++++++|+.|+||.|.
T Consensus 76 ~~i~~-----~~~~f~~~fdvVi~alDn~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G~~G~v~vi~P~~t~C~~C~ 150 (291)
T cd01488 76 GKIQD-----KDEEFYRQFNIIICGLDSIEARRWINGTLVSLLLYEDPESIIPLIDGGTEGFKGHARVILPGITACIECS 150 (291)
T ss_pred cccCc-----hhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhccccccccCccEEEEEEcccEEEEEEEcCCCCCccccC
Confidence 88874 34689999999999999999999999998654 599999999999999999999999999998
Q ss_pred CC--CCCCCCCcccccCCCCChhhHHHHHHHHhhhhhccChhhhhhhcCCChhhhhhhhhcCchhHHHHHHHHHHHhhhh
Q 001747 584 RD--PPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSNPVEYTTSMANAGDAQARDNLERVLECLDKE 661 (1018)
Q Consensus 584 ~~--~~~~~~p~Ct~~~~P~~~~h~i~wAk~~f~~~F~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 661 (1018)
.+ |+++++|+||++++|+.++|||+||+.+.
T Consensus 151 ~d~~p~~~~~p~Cti~~~P~~~~hci~~a~~~~----------------------------------------------- 183 (291)
T cd01488 151 LDLFPPQVTFPLCTIANTPRLPEHCIEYASLIQ----------------------------------------------- 183 (291)
T ss_pred CCCCCCCCCCCcccccCCCCCcchheeeeeeee-----------------------------------------------
Confidence 76 77788999999999999999999987730
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHhhhCCccccccCCCCCccCCCCCCCccccCCCCCchhHHHHHHHHHHHHHcCC
Q 001747 662 KCEIFQDCITWARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFVMAASILRAETFGI 741 (1018)
Q Consensus 662 ~~~~~~~ci~~a~~~f~~~F~~~i~~ll~~~p~d~~~~~g~~fWs~~kr~P~pl~fd~~n~~h~~fi~~~a~l~a~~~~i 741 (1018)
|+..+ |.
T Consensus 184 -------------------------------------------~~~~~--~~---------------------------- 190 (291)
T cd01488 184 -------------------------------------------WPKEF--PF---------------------------- 190 (291)
T ss_pred -------------------------------------------ccccc--CC----------------------------
Confidence 11100 00
Q ss_pred CCCCCCCChHHHHHHhhhcCCCCcCCCCCcceecccccccccccCcCcHHHHHHHHHHHHHhhhcCCCCCCcCCceeecc
Q 001747 742 PIPDWTNNPKMLAEAVDKVMVPDFLPKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLPSGFRLKPIQFEKD 821 (1018)
Q Consensus 742 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~feKD 821 (1018)
..|++|
T Consensus 191 --------------------------------------------------------------------------~~~~~d 196 (291)
T cd01488 191 --------------------------------------------------------------------------VPLDGD 196 (291)
T ss_pred --------------------------------------------------------------------------CcCCCC
Confidence 124566
Q ss_pred CCCCchhHHHHHHhhhhhhccCCCCccHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhcCCC
Q 001747 822 DDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGH 886 (1018)
Q Consensus 822 dd~n~hidFv~aasNLRa~ny~I~~~~~~~~k~iAG~IIPAIaTTtA~Vagl~~lEl~K~l~~~~ 886 (1018)
|+. ||+||+..|+.||.+|+|+..++..+++++||||||||||||+|||+++.|++|++.+..
T Consensus 197 ~~~--~~~~i~~~a~~ra~~f~i~~~~~~~~~~v~~~iiPai~stnaiia~~~~~~~~k~~~~~~ 259 (291)
T cd01488 197 DPE--HIEWLYQKALERAAQFNISGVTYSLTQGVVKRIIPAVASTNAIIAAACCLEALKIATDCY 259 (291)
T ss_pred CHH--HHHHHHHHHHHHHHHcCCCcccHHHHhhhHheeeCccCchHHHHHHHHHHHHHHHHhccc
Confidence 654 999999999999999999999999999999999999999999999999999999999754
No 10
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-55 Score=464.15 Aligned_cols=315 Identities=33% Similarity=0.459 Sum_probs=266.5
Q ss_pred CCCchhhhhhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCc
Q 001747 7 NQTDIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGK 86 (1018)
Q Consensus 7 ~~~~~~~~~YdRQi~l~G~~~q~~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk 86 (1018)
..++.+..+||||||+||.++|++|+++||||+|++|+|+||+|||+|+|||++|++|+..|++.|++.|||+..+++|+
T Consensus 5 else~E~alYDRQIRLWG~~AQ~~lr~s~VLlig~k~lgaEiaKnivLaGV~~ltlLD~~~Vt~Ed~~~qFli~~~~vg~ 84 (331)
T KOG2014|consen 5 ELSEQEIALYDRQIRLWGLEAQRRLRKSHVLLIGGKGLGAEIAKNIVLAGVGSLTLLDDRLVTEEDVGAQFLISASSVGQ 84 (331)
T ss_pred hhhHHHHHHHHHHHHHccHHHHHhhhhceEEEecCchHHHHHHHHhhhcccceeEEeeccccchhcCCceeEEchhhhch
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhCCCcEEEEEecCC---ChhhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEEeeecceeEEEEe
Q 001747 87 NRALASVQKLQELNNAVVLSTLTSKL---TKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFC 163 (1018)
Q Consensus 87 ~ka~a~~~~L~elNp~V~v~~~~~~l---~~~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~~~~~G~~G~vf~ 163 (1018)
+||+++.+++++|||.|+|.+..+++ +++||.+||+||.+..+.+...++|++||+++ |+|+.++++|++||+|+
T Consensus 85 ~raeas~erl~~LNPmV~v~~d~edl~ek~eeff~qFdlVV~~~~s~e~~~kvn~icrk~~--i~F~a~d~~g~~Gy~F~ 162 (331)
T KOG2014|consen 85 TRAEASLERLQDLNPMVDVSVDKEDLSEKDEEFFTQFDLVVATDQSREEKCKVNEICRKLN--IAFYAGDCFGLCGYAFA 162 (331)
T ss_pred HHHHHHHHHHHhcCCceEEEechhhhhhcchhhhhceeEEEEeccchhhhhhHHHHHHhcC--ceEEeccccceeeeeee
Confidence 99999999999999999999998876 46899999999999999999999999999999 99999999999999999
Q ss_pred ecCCceEEecCCCCCCcceeeeeeccCCCceeecccccccccccCCeeEEEEeecccccCCCCCccccccCCceeeeccc
Q 001747 164 DFGPEFTVVDVDGEDPHTGIIASISNDNPALVSCVDDERLEFQDGDLVVFSEVHGMTELNDGKPRKIKSARPYSFTLEED 243 (1018)
Q Consensus 164 d~g~~~~v~d~~ge~p~~~~i~~i~~~~~~~v~~~~~~~~~l~dgd~v~f~ev~gm~~ln~~~~~~i~~~~~~~~~i~~d 243 (1018)
|+++ |.+.+..-... .++ ..+..++ |
T Consensus 163 dL~~-h~y~~~~~~~~------~~~-----------------------------------~~k~~k~------------~ 188 (331)
T KOG2014|consen 163 DLQE-HKYLEEKTKVA------KVS-----------------------------------QTKRAKV------------D 188 (331)
T ss_pred ehhh-hhhhhhccccc------ccc-----------------------------------cccceee------------e
Confidence 9985 44332110000 000 0000000 0
Q ss_pred cccccceeecceEEEeeCCeeecCCchHHhhcCCCCcccccCccCCCCChHHHHHHHHHHHHHHhCCCCCCCCHHHHHHH
Q 001747 244 TTNYGTYVKGGIVTQVKQPKVLNFKPLREALEDPGDFLLSDFSKFDRPPPLHLAFQALDKFVSELGRFPVAGSEEDAQKL 323 (1018)
Q Consensus 244 t~~f~~y~~gg~~~qvk~~~~~~f~sL~~~l~~p~~~~~~d~~k~~~~~~l~~~~~al~~F~~~~gr~P~~~~~~D~~~l 323 (1018)
. .+..-+.+.+.|+|+++.|+.++. .....+..|...+|++++.+..|.+.+||.|+.-..+|.+.+
T Consensus 189 ~-----------~~~~~vk~~~~~~~~~Eal~~~~~--~k~k~~~rr~~~~~~ll~v~l~f~~s~~r~pg~~~~~d~erl 255 (331)
T KOG2014|consen 189 E-----------TETEWVKRKVVFPSVKEALSVDWT--KKEKRKPRRTKKLYFLLPVLLKFRTSEGRDPGETSEEDLERL 255 (331)
T ss_pred e-----------ccceehhhhhcccCHHHHHhcccc--hhhhhhhhccCcceehHHHHHHHHHhcCCCCccccHHHHHHH
Confidence 0 001122367889999999997631 112234567888999999999999999999996678999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCHHHHHHHHhhcccccCchhhhhhhhhhhhHhhhhcCCccccceeeeeecCCCC
Q 001747 324 ISVATNINESLGDGRVEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLYQFFYFDSVESL 396 (1018)
Q Consensus 324 ~~~~~~i~~~~~~~~~~~i~~~~i~~~~~~~~~el~pvaA~iGGiaAQEVIK~iT~kf~Pi~n~~~fD~~e~l 396 (1018)
+.+.+++++.. .-++++++ +|..+.+.+++|+||++||++||||||+||++-.|++|+|||||+++.
T Consensus 256 ~~I~~ell~s~-----~i~pd~~~-~f~~~~~~ef~Pv~AvVGGivaQevIk~isk~~~Pl~Nff~fdg~~g~ 322 (331)
T KOG2014|consen 256 LQIRNELLESE-----TIIPDELL-EFLSLIFTEFAPVCAVVGGILAQEVIKAISKKGPPLNNFFIFDGETGK 322 (331)
T ss_pred HHHHHhhcccc-----ccCCchHH-HHHHhcccccCchhhhhhhHhHHHHHHHhhcCCCcccceEEeecccCc
Confidence 99999988733 23556677 888999999999999999999999999999999999999999999884
No 11
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=100.00 E-value=2.8e-55 Score=504.25 Aligned_cols=366 Identities=26% Similarity=0.410 Sum_probs=279.1
Q ss_pred hhhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHH
Q 001747 14 DLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASV 93 (1018)
Q Consensus 14 ~~YdRQi~l~G~~~q~~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~ 93 (1018)
.|||||+|+||.+||++|++++|||+|+||+|+|++|||||+|||+|||+|++.|+.+||++|||++++|+|++||++++
T Consensus 1 ~rYDRQlrLwG~~gQ~~L~~s~VlliG~gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~ 80 (425)
T cd01493 1 QKYDRQLRLWGEHGQAALESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATC 80 (425)
T ss_pred CcchHHHHHhHHHHHHHHhhCeEEEEcCcHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCcEEEEEecCCC------hhhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEEeeecceeEEEEeecCC
Q 001747 94 QKLQELNNAVVLSTLTSKLT------KEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFGP 167 (1018)
Q Consensus 94 ~~L~elNp~V~v~~~~~~l~------~~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~~~~~G~~G~vf~d~g~ 167 (1018)
++|++|||+|+++++.+.++ ++++.+||+||+|.++...+..++++||+++ ||||++++.|++|+++++++
T Consensus 81 ~~L~eLNp~V~i~~~~e~~~~ll~~~~~f~~~fdiVI~t~~~~~~~~~L~~~c~~~~--iPlI~~~s~G~~G~v~v~~~- 157 (425)
T cd01493 81 ELLQELNPDVNGSAVEESPEALLDNDPSFFSQFTVVIATNLPESTLLRLADVLWSAN--IPLLYVRSYGLYGYIRIQLK- 157 (425)
T ss_pred HHHHHHCCCCEEEEEecccchhhhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEecccCEEEEEEEEC-
Confidence 99999999999999987653 5789999999999999999999999999999 99999999999999999998
Q ss_pred ceEEecCCCCCCcceeeeeeccCCCceeecccccccccccCCeeEEEEe----------ecccccCCCC-CccccccCCc
Q 001747 168 EFTVVDVDGEDPHTGIIASISNDNPALVSCVDDERLEFQDGDLVVFSEV----------HGMTELNDGK-PRKIKSARPY 236 (1018)
Q Consensus 168 ~~~v~d~~ge~p~~~~i~~i~~~~~~~v~~~~~~~~~l~dgd~v~f~ev----------~gm~~ln~~~-~~~i~~~~~~ 236 (1018)
+|++++++|+.... -.++.+++|.+....+.. .+.+.|......+ +.|..-+++. |.....+..|
T Consensus 158 ~h~i~et~p~~~~~--DLRL~~P~peL~~~~~~~--dl~~ld~~~h~hvPy~viL~~~l~~w~~~~~g~~p~~~~ek~~f 233 (425)
T cd01493 158 EHTIVESHPDNALE--DLRLDNPFPELREHADSI--DLDDMDPAEHSHTPYIVILIKYLEKWRSAHNGQLPSTYKEKKEF 233 (425)
T ss_pred CeEEEECCCCCCCc--CcccCCCcHHHHHHHHhc--CCccCChhhcCCCCHHHHHHHHHHHHHHhcCCCCCCCHHHHHHH
Confidence 68899999876432 235778888887776543 2333322112111 1222222221 2212222222
Q ss_pred eeee------ccccccccceeecceEEEeeCCeeecCCchHHhhcCCCCcccccCccCCCCChHHHHHHHHHHHHHH-hC
Q 001747 237 SFTL------EEDTTNYGTYVKGGIVTQVKQPKVLNFKPLREALEDPGDFLLSDFSKFDRPPPLHLAFQALDKFVSE-LG 309 (1018)
Q Consensus 237 ~~~i------~~dt~~f~~y~~gg~~~qvk~~~~~~f~sL~~~l~~p~~~~~~d~~k~~~~~~l~~~~~al~~F~~~-~g 309 (1018)
+-.+ ..|..+|.+.... ...-...+. --.++++.++++.. .+.+ ..+..+|++.+||.+|.++ +|
T Consensus 234 ~~~i~~~~~~~~~eeNf~EA~~~-~~~~~~~~~--i~~~v~~~~~~~~~---~~~~--~~~~~fwi~~~alk~F~~~~~g 305 (425)
T cd01493 234 RDLVRSLMRSNEDEENFEEAIKA-VNKALNRTK--IPSSVEEIFNDDRC---ENLT--SQSSSFWIMARALKEFVAEENG 305 (425)
T ss_pred HHHHHHhcccCCCccchHHHHHH-HHHhhCCCC--CcHHHHHHHhchhc---ccCC--CCCchHHHHHHHHHHHHHhcCC
Confidence 1111 1344455443221 001111110 12345555655420 1111 2345699999999999988 99
Q ss_pred CCCCCCC----------------------HHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHhhcc--------cccC
Q 001747 310 RFPVAGS----------------------EEDAQKLISVATNINESLGDGRVEDINTKLLRHFAFGAR--------AVLN 359 (1018)
Q Consensus 310 r~P~~~~----------------------~~D~~~l~~~~~~i~~~~~~~~~~~i~~~~i~~~~~~~~--------~el~ 359 (1018)
.+|-++. ..|++++.+++.++....|.. .+.|+++.|+.||+.+. .--|
T Consensus 306 ~lPl~G~lPDM~s~t~~Yi~Lq~iY~~ka~~D~~~v~~~v~~~~~~~g~~-~~~I~~~~i~~FCkna~~l~~i~~~~~~~ 384 (425)
T cd01493 306 LLPLPGTLPDMTADTEKYIKLQNIYREKAEKDAAEVEKYVREILKSLGRS-PDSISDKEIKLFCKNAAFLRVIRGRSLEH 384 (425)
T ss_pred CCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCCCCHHHHHHHHhhHHhhhcccCCcccc
Confidence 8887653 678899999999888877643 46899999999998752 2239
Q ss_pred chhhhhhhhhhhhHhhhhcCCccccceeeeeecCCC
Q 001747 360 PMAAMFGGIVGQEVVKACSGKFHPLYQFFYFDSVES 395 (1018)
Q Consensus 360 pvaA~iGGiaAQEVIK~iT~kf~Pi~n~~~fD~~e~ 395 (1018)
|+|||+||+|||||||++|+||+|++|+|+|||+.+
T Consensus 385 ~~~~~~gg~~aqE~iK~~t~q~vp~~n~~i~dg~~~ 420 (425)
T cd01493 385 NISAFMGGIAAQEVIKLITKQYVPIDNTFIFDGIRS 420 (425)
T ss_pred hHHHHHhHHHHHHHHHHHhccccccCCceEEecccc
Confidence 999999999999999999999999999999999865
No 12
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-55 Score=476.39 Aligned_cols=378 Identities=26% Similarity=0.396 Sum_probs=291.0
Q ss_pred hhhhhhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHH
Q 001747 11 IDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRAL 90 (1018)
Q Consensus 11 ~~~~~YdRQi~l~G~~~q~~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~ 90 (1018)
....+||||+|+||.+||..|..++||++|+|++|+|++|||||+|||+||++|+..|..+|++.|||+..+++|++||+
T Consensus 5 ~~~~kYDRQlRlwge~gQ~~le~a~vCll~~~~~g~e~lKnLvl~Gigs~tvvd~~~v~~~d~g~nF~~~~~~~GksrA~ 84 (523)
T KOG2016|consen 5 EPKTKYDRQLRLWGEEGQAALESASVCLLNATPLGSEALKNLVLPGIGSFTVVDGSKVEQGDLGNNFFLDAKSIGKSRAE 84 (523)
T ss_pred chhhHHHHHHHHHHHHhHhhhhhceEEEecCChhHHHHHHhhcccccccEEEEecceeeecchhhHHHHHHHhhchhHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCcEEEEEecCC------ChhhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEEeeecceeEEEEee
Q 001747 91 ASVQKLQELNNAVVLSTLTSKL------TKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCD 164 (1018)
Q Consensus 91 a~~~~L~elNp~V~v~~~~~~l------~~~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~~~~~G~~G~vf~d 164 (1018)
++++.|++|||.|..+...+.. +++++.+|++||.+..+.+...++.++||+++ ||++.+.++|++|+++..
T Consensus 85 a~~e~LqeLN~~V~~~~vee~p~~Li~~~p~ff~qFtvViatnl~E~~~~kl~~~l~~~~--vpll~~rs~Gl~G~iRI~ 162 (523)
T KOG2016|consen 85 ATLEFLQELNPSVSGSFVEESPDFLIDNDPSFFSQFTVVIATNLNEQTLLKLAEILREAN--VPLLLTRSYGLAGTIRIS 162 (523)
T ss_pred HHHHHHHHhChhhhcCccccChhhhhhcCchhhheeeeeeccccchhhhhhhHHHHHhcC--CceEEEeeecceEEEEEE
Confidence 9999999999999999988763 45799999999999999999999999999999 999999999999999999
Q ss_pred cCCceEEecCCCCCCcceeeeeeccCCCceeeccccccc----------------------------------------c
Q 001747 165 FGPEFTVVDVDGEDPHTGIIASISNDNPALVSCVDDERL----------------------------------------E 204 (1018)
Q Consensus 165 ~g~~~~v~d~~ge~p~~~~i~~i~~~~~~~v~~~~~~~~----------------------------------------~ 204 (1018)
.. +|++++.+++.|... .++.++||.++..++.... .
T Consensus 163 ik-EH~iieshPD~~~~D--LRL~nPwpeLi~~v~s~dLd~m~~a~~shiPyivll~K~l~~w~~~~n~~~p~t~~ekk~ 239 (523)
T KOG2016|consen 163 IK-EHTIIESHPDNPLDD--LRLDNPWPELIEYVDSTDLDVMDPAAHSHIPYIVLLVKYLEKWAKQHNGNLPSTYDEKKE 239 (523)
T ss_pred ee-eccccccCCCCcccc--cccCCCcHHHHHHHhhcCccccchhhhcCCCcHHHHHHHHHHHHHhhcCCCCccHHHHHH
Confidence 97 599999999876432 2233333333332211110 0
Q ss_pred c--------ccCCeeEEEE---------------------------------------------------------eec-
Q 001747 205 F--------QDGDLVVFSE---------------------------------------------------------VHG- 218 (1018)
Q Consensus 205 l--------~dgd~v~f~e---------------------------------------------------------v~g- 218 (1018)
+ ..-|.-+|.| +.|
T Consensus 240 fkd~i~~~~~~~DeeNyeEA~~a~~~Af~~~~i~ssv~dil~d~~c~~~~~~s~~FWim~~aLk~Fv~~e~~g~lPL~Gt 319 (523)
T KOG2016|consen 240 FKDLIRSEMGKADEENYEEAIKAVNKAFAPTQIPSSVKDILHDDRCAQIGKDSSDFWIMAAALKEFVLKEEGGFLPLRGT 319 (523)
T ss_pred HHHHHHhcCCCCccccHHHHHHHHHHHhcccCCchhHHHHhcChHHHHhcCCCcHHHHHHHHHHHHHcccCCCccCCCCC
Confidence 0 0001112211 011
Q ss_pred ccccCCCCCccccccCCceeeeccccccccceee------cceEEEee------------CCeeecCCchHHhhcCCCCc
Q 001747 219 MTELNDGKPRKIKSARPYSFTLEEDTTNYGTYVK------GGIVTQVK------------QPKVLNFKPLREALEDPGDF 280 (1018)
Q Consensus 219 m~~ln~~~~~~i~~~~~~~~~i~~dt~~f~~y~~------gg~~~qvk------------~~~~~~f~sL~~~l~~p~~~ 280 (1018)
+++++..+..+|+.+..|.-+.+.|...+.++++ |.....+. ..++++|+++++... |...
T Consensus 320 lPDM~ssTe~YI~Lq~iY~eKA~~D~~~v~~~v~~vlk~lgr~~~sIs~~~ik~fCkna~~lkv~r~~~~~eey~-~s~~ 398 (523)
T KOG2016|consen 320 LPDMTSSTEHYIRLQKIYHEKAEADALEVERRVQEVLKSLGRSPDSISDDVIKLFCKNAAKLKVCRGRTLAEEYE-KSIT 398 (523)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCccccCHHHHHHHHhhhhcceeeecchhhhhhc-ccch
Confidence 1222222335566666665444444322222221 00001111 126888999999888 4210
Q ss_pred ---ccccCccCCCCChHHHHHHHHHHHHHHhCCCCCCC-CHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHhhccc
Q 001747 281 ---LLSDFSKFDRPPPLHLAFQALDKFVSELGRFPVAG-SEEDAQKLISVATNINESLGDGRVEDINTKLLRHFAFGARA 356 (1018)
Q Consensus 281 ---~~~d~~k~~~~~~l~~~~~al~~F~~~~gr~P~~~-~~~D~~~l~~~~~~i~~~~~~~~~~~i~~~~i~~~~~~~~~ 356 (1018)
..++.........+|+++||+++|..++|++||.. -+.|+..+..++..+..+++... ..+.++.+.|+||++++
T Consensus 399 ~~~~~~~~e~~~~~~~~~~~lRavdrfl~~~gk~pG~~~v~~D~~~lks~a~~~lse~g~~~-~~v~d~~i~E~cR~gaa 477 (523)
T KOG2016|consen 399 ELIKYSSNENYSNEIGFYLLLRAVDRFLKEKGKYPGEGPVEIDITKLKSIAASLLSELGLDG-NAVTDDAIHEICRFGAA 477 (523)
T ss_pred hhhhhccccccchhHHHHHHHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHHHhccCc-ccCcHHHHHHHHhcCCc
Confidence 11122122345689999999999999999999943 26899999999999999988642 47889999999999999
Q ss_pred ccCchhhhhhhhhhhhHhhhhcCCccccceeeeeecCCC
Q 001747 357 VLNPMAAMFGGIVGQEVVKACSGKFHPLYQFFYFDSVES 395 (1018)
Q Consensus 357 el~pvaA~iGGiaAQEVIK~iT~kf~Pi~n~~~fD~~e~ 395 (1018)
|+|.|+||+||+|||||||+||+||+||+|+|+|||++.
T Consensus 478 ElH~VsAfiGGiaaQEvIKLiTkQyvPidNTFIfnGi~~ 516 (523)
T KOG2016|consen 478 ELHVVSAFIGGIAAQEVIKLITKQYVPIDNTFIFNGITQ 516 (523)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhceecccceeEeccccc
Confidence 999999999999999999999999999999999999965
No 13
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=100.00 E-value=9.1e-38 Score=327.32 Aligned_cols=148 Identities=40% Similarity=0.669 Sum_probs=141.7
Q ss_pred hhhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHH
Q 001747 14 DLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASV 93 (1018)
Q Consensus 14 ~~YdRQi~l~G~~~q~~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~ 93 (1018)
+|||||+++||.++|++|++++|+|+|+||+|+|++|||+++|||+|+|+|+|.|+.+||+||||++++|+|++||++++
T Consensus 2 ~~Y~Rqi~l~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~ 81 (197)
T cd01492 2 ALYDRQIRLWGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASL 81 (197)
T ss_pred chhhHHHHHhCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCcEEEEEecCCC---hhhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEEeeecceeEEEEe
Q 001747 94 QKLQELNNAVVLSTLTSKLT---KEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFC 163 (1018)
Q Consensus 94 ~~L~elNp~V~v~~~~~~l~---~~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~~~~~G~~G~vf~ 163 (1018)
++|+++||+++|+.+...++ ++++++||+||+|.++.+.+..+|++||+++ +|||.+++.|++|++|+
T Consensus 82 ~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~~--ip~i~~~~~G~~G~v~~ 152 (197)
T cd01492 82 ERLRALNPRVKVSVDTDDISEKPEEFFSQFDVVVATELSRAELVKINELCRKLG--VKFYATGVHGLFGFVFA 152 (197)
T ss_pred HHHHHHCCCCEEEEEecCccccHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEEecCCEEEEEE
Confidence 99999999999999887664 3678999999999999999999999999999 99999999999998774
No 14
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=100.00 E-value=6.6e-37 Score=321.27 Aligned_cols=148 Identities=40% Similarity=0.615 Sum_probs=140.7
Q ss_pred hhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCc--CccCchHHHHH
Q 001747 15 LHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSD--NDIGKNRALAS 92 (1018)
Q Consensus 15 ~YdRQi~l~G~~~q~~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~--~diGk~ka~a~ 92 (1018)
+||||+++||.++|++|+++||+|+|+||+|+|++|||+++|||+|+|+|+|.|+.+|++||||+++ +|+|++||+++
T Consensus 1 ~y~Rqi~l~G~~~q~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~ 80 (198)
T cd01485 1 LYDRQIRLWGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAAS 80 (198)
T ss_pred CccceeeccCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHH
Confidence 6999999999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred HHHHHhhCCCcEEEEEecCCC------hhhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEEeeecceeEEEEee
Q 001747 93 VQKLQELNNAVVLSTLTSKLT------KEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCD 164 (1018)
Q Consensus 93 ~~~L~elNp~V~v~~~~~~l~------~~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~~~~~G~~G~vf~d 164 (1018)
+++|+++||+|+|+++.+.+. ++++++||+||+|.++.+.+..+|++|++++ ||||++++.|++|++|+|
T Consensus 81 ~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~~--ip~i~~~~~G~~G~v~~~ 156 (198)
T cd01485 81 YEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCRKHH--IPFISCATYGLIGYAFFD 156 (198)
T ss_pred HHHHHHHCCCCEEEEEecccccchhhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEEeecCEEEEEEc
Confidence 999999999999999887653 3578999999999999999999999999999 999999999999987743
No 15
>PRK08223 hypothetical protein; Validated
Probab=100.00 E-value=8.5e-37 Score=331.75 Aligned_cols=182 Identities=27% Similarity=0.375 Sum_probs=167.1
Q ss_pred ccCchhhhhhhcCHHHHHHHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccc
Q 001747 409 INSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 488 (1018)
Q Consensus 409 ~~~rydrq~~~~G~~~q~~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~ 488 (1018)
..+||+||+.+||.++|++|++++|+||||||+||+++++||++|| |+|+|+|+|+||.||||||++|+.+|||+
T Consensus 6 ~~~~ysRq~~~iG~e~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGV-----G~i~lvD~D~Ve~SNLnRQ~l~~~~diG~ 80 (287)
T PRK08223 6 YDEAFCRNLGWITPTEQQRLRNSRVAIAGLGGVGGIHLLTLARLGI-----GKFTIADFDVFELRNFNRQAGAMMSTLGR 80 (287)
T ss_pred HHHHHhhhhhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHhCC-----CeEEEEeCCCcchhccccccCcChhHCCC
Confidence 3579999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhCCCCeEEEEecccCCccccccccccccCccEEEEcccCh--hHHHHHHhhccccccceEecccCCcc
Q 001747 489 AKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNV--NARLYVDQRCLYFQKPLLESGTLGAK 566 (1018)
Q Consensus 489 ~Ka~va~~~l~~~np~~~i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~--~ar~~v~~~c~~~~~pli~~g~~g~~ 566 (1018)
+|+++|+++++++||+++|+++...+++++. +++++++|+||||+||+ ++|.++++.|+.+++|+|.+++.|+.
T Consensus 81 ~Kve~a~~~l~~iNP~v~V~~~~~~l~~~n~----~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g~~ 156 (287)
T PRK08223 81 PKAEVLAEMVRDINPELEIRAFPEGIGKENA----DAFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLGMG 156 (287)
T ss_pred cHHHHHHHHHHHHCCCCEEEEEecccCccCH----HHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccCCe
Confidence 9999999999999999999999999986543 46789999999999996 89999999999999999999999999
Q ss_pred cceEEEeCcccccccCC-CC---CCC---------CCCCcccccCCC
Q 001747 567 CNTQMVIPHLTENYGAS-RD---PPE---------KQAPMCTVHSFP 600 (1018)
Q Consensus 567 g~~~v~ip~~t~~y~~~-~~---~~~---------~~~p~Ct~~~~P 600 (1018)
|++.++.|+ ++||.|. +. |++ ...|.|...++.
T Consensus 157 gqv~v~~p~-~p~~~~~f~~~~~~~~~~~~~~~~~~~~p~c~~~gvl 202 (287)
T PRK08223 157 TALLVFDPG-GMSFDDYFDLSDGMNEVEKAVRFLAGLAPSMLHRGYL 202 (287)
T ss_pred EEEEEEcCC-CCchhhhcCCCCCCCchhhhcccCCcCCCccccCCcc
Confidence 999999997 8999993 33 333 456788777766
No 16
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=100.00 E-value=1.9e-36 Score=319.18 Aligned_cols=175 Identities=29% Similarity=0.495 Sum_probs=160.7
Q ss_pred chhhhhhh--cCHHHHHHHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccch
Q 001747 412 RYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQA 489 (1018)
Q Consensus 412 rydrq~~~--~G~~~q~~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~ 489 (1018)
|||||+++ ||.++|++|++++|+|||+||+||+++++|+++|+ |+|+++|.|.||.+||+|||||+++|||++
T Consensus 1 rY~Rqi~l~~~g~~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv-----~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~ 75 (202)
T TIGR02356 1 RYARQLLLPDIGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGV-----GTIVIVDDDHVDLSNLQRQILFTEEDVGRP 75 (202)
T ss_pred CCcceecchhcCHHHHHHhcCCCEEEECCCHHHHHHHHHHHHcCC-----CeEEEecCCEEcccchhhhhccChhhCCCh
Confidence 89999998 99999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCeEEEEecccCCccccccccccccCccEEEEcccChhHHHHHHhhccccccceEecccCCcccce
Q 001747 490 KSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNT 569 (1018)
Q Consensus 490 Ka~va~~~l~~~np~~~i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~~~pli~~g~~g~~g~~ 569 (1018)
|+++++++++++||+++++.+...+.+++ + +++++++|+||+|+||.++|.++++.|+.+++|+|.+|+.|+.|++
T Consensus 76 Ka~~~~~~l~~~np~v~i~~~~~~i~~~~--~--~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~~~~g~~G~~ 151 (202)
T TIGR02356 76 KVEVAAQRLRELNSDIQVTALKERVTAEN--L--ELLINNVDLVLDCTDNFATRYLINDACVALGTPLISAAVVGFGGQL 151 (202)
T ss_pred HHHHHHHHHHHhCCCCEEEEehhcCCHHH--H--HHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCeEEE
Confidence 99999999999999999999998886532 1 4678999999999999999999999999999999999999999999
Q ss_pred EEEeCc-ccccccCCCCCCCCCCCccc
Q 001747 570 QMVIPH-LTENYGASRDPPEKQAPMCT 595 (1018)
Q Consensus 570 ~v~ip~-~t~~y~~~~~~~~~~~p~Ct 595 (1018)
.++.|+ .++||.|.........+.|.
T Consensus 152 ~~~~p~~~~~c~~c~~~~~~~~~~~~~ 178 (202)
T TIGR02356 152 MVFDPGGEGPCLRCLFPDIADTGPSCA 178 (202)
T ss_pred EEEeCCCCCCChhhcCCCCcccCCCCc
Confidence 999998 79999996433223345564
No 17
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=100.00 E-value=1.8e-35 Score=318.00 Aligned_cols=164 Identities=35% Similarity=0.579 Sum_probs=156.3
Q ss_pred chhhhhhh--cCHHHHHHHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccch
Q 001747 412 RYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQA 489 (1018)
Q Consensus 412 rydrq~~~--~G~~~q~~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~ 489 (1018)
||+||+++ ||.+.|++|+++||+||||||+||+++++|+++|+ |+|+|+|+|.|+.|||||||||+++|||++
T Consensus 1 rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GglGs~va~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~l~~~~diG~~ 75 (228)
T cd00757 1 RYSRQILLPEIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGV-----GKLGLVDDDVVELSNLQRQILHTEADVGQP 75 (228)
T ss_pred CcceeechhhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEcCCEEcCcccccccccChhhCCCh
Confidence 89999999 99999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCeEEEEecccCCccccccccccccCccEEEEcccChhHHHHHHhhccccccceEecccCCcccce
Q 001747 490 KSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNT 569 (1018)
Q Consensus 490 Ka~va~~~l~~~np~~~i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~~~pli~~g~~g~~g~~ 569 (1018)
|+++++++++++||+++|+.+..++..++ + .++++++|+||+|+||+++|.++++.|+.+++|+|++|+.|+.|++
T Consensus 76 Ka~~~~~~l~~~np~~~i~~~~~~i~~~~--~--~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~~g~~g~~g~v 151 (228)
T cd00757 76 KAEAAAERLRAINPDVEIEAYNERLDAEN--A--EELIAGYDLVLDCTDNFATRYLINDACVKLGKPLVSGAVLGFEGQV 151 (228)
T ss_pred HHHHHHHHHHHhCCCCEEEEecceeCHHH--H--HHHHhCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEE
Confidence 99999999999999999999998885432 1 4678899999999999999999999999999999999999999999
Q ss_pred EEEeCcccccccCCC
Q 001747 570 QMVIPHLTENYGASR 584 (1018)
Q Consensus 570 ~v~ip~~t~~y~~~~ 584 (1018)
.+++|+.+.||.|..
T Consensus 152 ~~~~p~~~~c~~c~~ 166 (228)
T cd00757 152 TVFIPGEGPCYRCLF 166 (228)
T ss_pred EEECCCCCCCccccC
Confidence 999999999999954
No 18
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=100.00 E-value=2.3e-35 Score=319.48 Aligned_cols=166 Identities=32% Similarity=0.478 Sum_probs=156.5
Q ss_pred cCchhhhhhh--cCHHHHHHHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCccccccc
Q 001747 410 NSRYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 487 (1018)
Q Consensus 410 ~~rydrq~~~--~G~~~q~~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG 487 (1018)
..||+||+++ ||.++|++|++++|+|||+||+||+++++|+++|| |+|+|+|+|.|+.|||+||+||+++|||
T Consensus 10 ~~rY~Rqi~l~~~g~~~Q~~L~~~~VliiG~GglGs~va~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~l~~~~dvG 84 (245)
T PRK05690 10 MLRYNRQIILRGFDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGV-----GTLTLVDFDTVSLSNLQRQVLHDDATIG 84 (245)
T ss_pred HHHHHHhccchhcCHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCC-----CEEEEEcCCEECcchhhhhhcCChhhCC
Confidence 3799999987 99999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred chHHHHHHHHHHhhCCCCeEEEEecccCCccccccccccccCccEEEEcccChhHHHHHHhhccccccceEecccCCccc
Q 001747 488 QAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKC 567 (1018)
Q Consensus 488 ~~Ka~va~~~l~~~np~~~i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~~~pli~~g~~g~~g 567 (1018)
++|+++++++++++||+++|+++...+.+++. +++++++|+||+|+||+++|.++++.|+.+++|+|.+++.|+.|
T Consensus 85 ~~Ka~~a~~~l~~lnp~v~i~~~~~~i~~~~~----~~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~~G 160 (245)
T PRK05690 85 QPKVESARAALARINPHIAIETINARLDDDEL----AALIAGHDLVLDCTDNVATRNQLNRACFAAKKPLVSGAAIRMEG 160 (245)
T ss_pred ChHHHHHHHHHHHHCCCCEEEEEeccCCHHHH----HHHHhcCCEEEecCCCHHHHHHHHHHHHHhCCEEEEeeeccCCc
Confidence 99999999999999999999999988875321 46789999999999999999999999999999999999999999
Q ss_pred ceEEEeCcc-cccccCCC
Q 001747 568 NTQMVIPHL-TENYGASR 584 (1018)
Q Consensus 568 ~~~v~ip~~-t~~y~~~~ 584 (1018)
++.++.|+. ++||.|..
T Consensus 161 ~v~~~~~~~~~~c~~c~~ 178 (245)
T PRK05690 161 QVTVFTYQDDEPCYRCLS 178 (245)
T ss_pred eEEEEecCCCCceeeecc
Confidence 999999875 79999963
No 19
>PRK08328 hypothetical protein; Provisional
Probab=100.00 E-value=4.1e-35 Score=315.00 Aligned_cols=164 Identities=30% Similarity=0.476 Sum_probs=156.3
Q ss_pred CchhhhhhhcCHHHHHHHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccc-h
Q 001747 411 SRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ-A 489 (1018)
Q Consensus 411 ~rydrq~~~~G~~~q~~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~-~ 489 (1018)
+||+||+++||.++|++|++++|+|+||||+||+++++|+++|| |+|+|+|+|.|+.||||||++|+++|+|+ +
T Consensus 8 ~ry~Rq~~~~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~ 82 (231)
T PRK08328 8 ERYDRQIMIFGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGV-----GRILLIDEQTPELSNLNRQILHWEEDLGKNP 82 (231)
T ss_pred HHHhhHHHhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEcCCccChhhhccccccChhhcCchH
Confidence 79999999999999999999999999999999999999999999 99999999999999999999999999999 6
Q ss_pred HHHHHHHHHHhhCCCCeEEEEecccCCccccccccccccCccEEEEcccChhHHHHHHhhccccccceEecccCCcccce
Q 001747 490 KSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNT 569 (1018)
Q Consensus 490 Ka~va~~~l~~~np~~~i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~~~pli~~g~~g~~g~~ 569 (1018)
|+++++++++++||+++|+++...+.+++ + +++++++|+||+|+||.++|.++++.|+.+++|+|.+|+.|+.|++
T Consensus 83 k~~~a~~~l~~~np~v~v~~~~~~~~~~~--~--~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i~g~~~g~~G~v 158 (231)
T PRK08328 83 KPLSAKWKLERFNSDIKIETFVGRLSEEN--I--DEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLVHGAVEGTYGQV 158 (231)
T ss_pred HHHHHHHHHHHhCCCCEEEEEeccCCHHH--H--HHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeeccCEEEE
Confidence 99999999999999999999998876533 2 4578999999999999999999999999999999999999999999
Q ss_pred EEEeCcccccccCC
Q 001747 570 QMVIPHLTENYGAS 583 (1018)
Q Consensus 570 ~v~ip~~t~~y~~~ 583 (1018)
.+++|+.|+||.|.
T Consensus 159 ~~~~p~~~~c~~~~ 172 (231)
T PRK08328 159 TTIVPGKTKRLREI 172 (231)
T ss_pred EEECCCCCCCHHHh
Confidence 99999999999885
No 20
>PRK07411 hypothetical protein; Validated
Probab=100.00 E-value=7.6e-35 Score=335.27 Aligned_cols=177 Identities=27% Similarity=0.454 Sum_probs=162.7
Q ss_pred cCchhhhhhh--cCHHHHHHHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCccccccc
Q 001747 410 NSRYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 487 (1018)
Q Consensus 410 ~~rydrq~~~--~G~~~q~~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG 487 (1018)
..||+||+.+ ||.++|++|+++||+||||||+||+++++|+++|| |+|+|+|+|+||.|||||||||+++|||
T Consensus 16 ~~ry~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gv-----g~l~lvD~D~ve~sNL~RQ~l~~~~dvG 90 (390)
T PRK07411 16 YERYSRHLILPEVGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGI-----GRIGIVDFDVVDSSNLQRQVIHGTSWVG 90 (390)
T ss_pred HHHhhceechhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEECCCEecccccCcCcccChHHCC
Confidence 3799999999 99999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred chHHHHHHHHHHhhCCCCeEEEEecccCCccccccccccccCccEEEEcccChhHHHHHHhhccccccceEecccCCccc
Q 001747 488 QAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKC 567 (1018)
Q Consensus 488 ~~Ka~va~~~l~~~np~~~i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~~~pli~~g~~g~~g 567 (1018)
++|+++|+++++++||+++|+++..++.+++. .++++++|+||+|+||.++|.++++.|+.+++|+|.+++.|+.|
T Consensus 91 ~~Ka~~a~~~l~~~np~v~v~~~~~~~~~~~~----~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~~g 166 (390)
T PRK07411 91 KPKIESAKNRILEINPYCQVDLYETRLSSENA----LDILAPYDVVVDGTDNFPTRYLVNDACVLLNKPNVYGSIFRFEG 166 (390)
T ss_pred CcHHHHHHHHHHHHCCCCeEEEEecccCHHhH----HHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEccCEE
Confidence 99999999999999999999999998886432 46789999999999999999999999999999999999999999
Q ss_pred ceEEEeCcccccccCC-CCC-CCCCCCccc
Q 001747 568 NTQMVIPHLTENYGAS-RDP-PEKQAPMCT 595 (1018)
Q Consensus 568 ~~~v~ip~~t~~y~~~-~~~-~~~~~p~Ct 595 (1018)
++.++.|+.++||.|. +.+ +....|.|.
T Consensus 167 ~~~v~~~~~~~c~~c~~~~~~~~~~~~~c~ 196 (390)
T PRK07411 167 QATVFNYEGGPNYRDLYPEPPPPGMVPSCA 196 (390)
T ss_pred EEEEECCCCCCChHHhcCCCCCcccCCCCc
Confidence 9998888789999995 333 333345664
No 21
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=100.00 E-value=1.1e-34 Score=330.15 Aligned_cols=179 Identities=27% Similarity=0.392 Sum_probs=164.2
Q ss_pred cCchhhhhhh--cCHHHHHHHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCccccccc
Q 001747 410 NSRYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 487 (1018)
Q Consensus 410 ~~rydrq~~~--~G~~~q~~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG 487 (1018)
.+||+||+++ ||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|.|+||.|||||||||+++|||
T Consensus 6 ~~rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~l~~~~diG 80 (355)
T PRK05597 6 IARYRRQIMLGEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGV-----GHITIIDDDTVDLSNLHRQVIHSTAGVG 80 (355)
T ss_pred HhHhhheechhhcCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCC-----CeEEEEeCCEEcccccccCcccChhHCC
Confidence 3799999999 99999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred chHHHHHHHHHHhhCCCCeEEEEecccCCccccccccccccCccEEEEcccChhHHHHHHhhccccccceEecccCCccc
Q 001747 488 QAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKC 567 (1018)
Q Consensus 488 ~~Ka~va~~~l~~~np~~~i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~~~pli~~g~~g~~g 567 (1018)
++|+++++++++++||+++|+++..++.+++. .++++++|+||+|+||+.+|.++++.|+.+++|+|.+++.|+.|
T Consensus 81 ~~Ka~~a~~~l~~~np~v~v~~~~~~i~~~~~----~~~~~~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~~~~~g~~g 156 (355)
T PRK05597 81 QPKAESAREAMLALNPDVKVTVSVRRLTWSNA----LDELRDADVILDGSDNFDTRHLASWAAARLGIPHVWASILGFDA 156 (355)
T ss_pred ChHHHHHHHHHHHHCCCcEEEEEEeecCHHHH----HHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecCeE
Confidence 99999999999999999999999988875431 46789999999999999999999999999999999999999999
Q ss_pred ceEEEeCcccccccCC-CC-CCCCCCCccccc
Q 001747 568 NTQMVIPHLTENYGAS-RD-PPEKQAPMCTVH 597 (1018)
Q Consensus 568 ~~~v~ip~~t~~y~~~-~~-~~~~~~p~Ct~~ 597 (1018)
++.++.|+.++||.|. +. |+....|.|.-.
T Consensus 157 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 188 (355)
T PRK05597 157 QLSVFHAGHGPIYEDLFPTPPPPGSVPSCSQA 188 (355)
T ss_pred EEEEEcCCCCCCHHHhCCCCCCccCCCCcccc
Confidence 9999989889999994 33 333456777543
No 22
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=100.00 E-value=2.2e-34 Score=310.39 Aligned_cols=166 Identities=30% Similarity=0.445 Sum_probs=153.7
Q ss_pred cCchhhhhhhc--CHHHHHHHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCccccccc
Q 001747 410 NSRYDAQISVF--GAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 487 (1018)
Q Consensus 410 ~~rydrq~~~~--G~~~q~~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG 487 (1018)
..||+||+++| |.++|++|++++|+|+|+||+||+++++|+++|| |+|+|+|.|.|+.||||||+||+++|||
T Consensus 2 ~~ry~Rq~~l~~~g~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gv-----g~i~lvD~D~ve~sNL~RQ~l~~~~diG 76 (240)
T TIGR02355 2 MLRYNRQIILRGFDFDGQEALKASRVLIVGLGGLGCAASQYLAAAGV-----GNLTLLDFDTVSLSNLQRQVLHSDANIG 76 (240)
T ss_pred ccceeeeeecccCCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCC-----CEEEEEeCCcccccCcccceeeeHhhCC
Confidence 36999999995 6899999999999999999999999999999999 9999999999999999999999999999
Q ss_pred chHHHHHHHHHHhhCCCCeEEEEecccCCccccccccccccCccEEEEcccChhHHHHHHhhccccccceEecccCCccc
Q 001747 488 QAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKC 567 (1018)
Q Consensus 488 ~~Ka~va~~~l~~~np~~~i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~~~pli~~g~~g~~g 567 (1018)
++|+++++++++++||+++|+++..++.+++. .++++++|+||+|+||+++|.++++.|+.+++|+|.+++.|+.|
T Consensus 77 ~~Ka~~a~~~l~~inp~v~i~~~~~~i~~~~~----~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~~G 152 (240)
T TIGR02355 77 QPKVESAKDALTQINPHIAINPINAKLDDAEL----AALIAEHDIVVDCTDNVEVRNQLNRQCFAAKVPLVSGAAIRMEG 152 (240)
T ss_pred CcHHHHHHHHHHHHCCCcEEEEEeccCCHHHH----HHHhhcCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecccEe
Confidence 99999999999999999999999988865321 46789999999999999999999999999999999999999999
Q ss_pred ceEEEe-CcccccccCCC
Q 001747 568 NTQMVI-PHLTENYGASR 584 (1018)
Q Consensus 568 ~~~v~i-p~~t~~y~~~~ 584 (1018)
++.++. +..++||.|..
T Consensus 153 ~v~~~~~~~~~~c~~C~~ 170 (240)
T TIGR02355 153 QVSVFTYQDGEPCYRCLS 170 (240)
T ss_pred EEEEEecCCCCCcccccc
Confidence 988765 44578999964
No 23
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=100.00 E-value=1e-32 Score=317.80 Aligned_cols=186 Identities=23% Similarity=0.366 Sum_probs=167.0
Q ss_pred CchhhhhhhcCHHHHHHHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchH
Q 001747 411 SRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAK 490 (1018)
Q Consensus 411 ~rydrq~~~~G~~~q~~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~K 490 (1018)
.|||||+++||.++|++|.+++|+||||||+|||++|||+++|| |+|+|+|.|.|+.+||+|||+++.+|||++|
T Consensus 1 ~rYDRQlrLwG~~gQ~~L~~s~VlliG~gglGsEilKNLvL~GI-----g~~tIvD~~~V~~sDL~~nFfl~~~diGk~k 75 (425)
T cd01493 1 QKYDRQLRLWGEHGQAALESAHVCLLNATATGTEILKNLVLPGI-----GSFTIVDGSKVDEEDLGNNFFLDASSLGKSR 75 (425)
T ss_pred CcchHHHHHhHHHHHHHHhhCeEEEEcCcHHHHHHHHHHHHcCC-----CeEEEECCCcCchhhccccccCChhhcCcHH
Confidence 48999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCeEEEEecccCCccccccccccccCccEEEEcccChhHHHHHHhhccccccceEecccCCcccceE
Q 001747 491 STVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQ 570 (1018)
Q Consensus 491 a~va~~~l~~~np~~~i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~~~pli~~g~~g~~g~~~ 570 (1018)
|+++++.|+++||+++++++...+..-.. .+++||+++|+||.|.++...+..+++.|+.+++|+|.+++.|+.|+++
T Consensus 76 A~~~~~~L~eLNp~V~i~~~~e~~~~ll~--~~~~f~~~fdiVI~t~~~~~~~~~L~~~c~~~~iPlI~~~s~G~~G~v~ 153 (425)
T cd01493 76 AEATCELLQELNPDVNGSAVEESPEALLD--NDPSFFSQFTVVIATNLPESTLLRLADVLWSANIPLLYVRSYGLYGYIR 153 (425)
T ss_pred HHHHHHHHHHHCCCCEEEEEecccchhhh--hHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEecccCEEEEE
Confidence 99999999999999999999876543111 2367999999999999999999999999999999999999999999999
Q ss_pred EEeCcccccccCCCCCCCCCCCcccccCCCCChhhH
Q 001747 571 MVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHC 606 (1018)
Q Consensus 571 v~ip~~t~~y~~~~~~~~~~~p~Ct~~~~P~~~~h~ 606 (1018)
+.+|. ..+..+. |......+...++||+..+|+
T Consensus 154 v~~~~-h~i~et~--p~~~~~DLRL~~P~peL~~~~ 186 (425)
T cd01493 154 IQLKE-HTIVESH--PDNALEDLRLDNPFPELREHA 186 (425)
T ss_pred EEECC-eEEEECC--CCCCCcCcccCCCcHHHHHHH
Confidence 99995 3344443 333557888899999998855
No 24
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=100.00 E-value=3.6e-34 Score=300.13 Aligned_cols=151 Identities=25% Similarity=0.462 Sum_probs=144.3
Q ss_pred CchhhhhhhcCHHHHHHHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchH
Q 001747 411 SRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAK 490 (1018)
Q Consensus 411 ~rydrq~~~~G~~~q~~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~K 490 (1018)
.|||||+++||.++|++|++++|+|+||||+|||++|+|+++|| |+|+++|+|.|+.|||+|||||+++|||++|
T Consensus 2 ~~Y~Rqi~l~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~GV-----g~i~lvD~d~ve~snL~rqfl~~~~diG~~K 76 (197)
T cd01492 2 ALYDRQIRLWGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGI-----GSLTILDDRTVTEEDLGAQFLIPAEDLGQNR 76 (197)
T ss_pred chhhHHHHHhCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCC-----CEEEEEECCcccHhhCCCCccccHHHcCchH
Confidence 58999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCeEEEEecccCCccccccccccccCccEEEEcccChhHHHHHHhhccccccceEecccCCcccceE
Q 001747 491 STVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQ 570 (1018)
Q Consensus 491 a~va~~~l~~~np~~~i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~~~pli~~g~~g~~g~~~ 570 (1018)
+++++++++++||+++|+++...+.+. +++||+++|+||+|.|+.++|.++++.|+.+++|+|.+|+.|+.|++.
T Consensus 77 a~a~~~~L~~lNp~v~i~~~~~~~~~~-----~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v~ 151 (197)
T cd01492 77 AEASLERLRALNPRVKVSVDTDDISEK-----PEEFFSQFDVVVATELSRAELVKINELCRKLGVKFYATGVHGLFGFVF 151 (197)
T ss_pred HHHHHHHHHHHCCCCEEEEEecCcccc-----HHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEecCCEEEEE
Confidence 999999999999999999998877632 357899999999999999999999999999999999999999999876
Q ss_pred E
Q 001747 571 M 571 (1018)
Q Consensus 571 v 571 (1018)
+
T Consensus 152 ~ 152 (197)
T cd01492 152 A 152 (197)
T ss_pred E
Confidence 4
No 25
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=100.00 E-value=8.8e-33 Score=318.97 Aligned_cols=156 Identities=19% Similarity=0.250 Sum_probs=148.3
Q ss_pred CCCchhhhhhhhhhhc--cCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCcc
Q 001747 7 NQTDIDEDLHSRQLAV--YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDI 84 (1018)
Q Consensus 7 ~~~~~~~~~YdRQi~l--~G~~~q~~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~di 84 (1018)
.+++.+.+||+||+++ ||.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+.+||+|||+++++|+
T Consensus 14 ~l~~~~~~ry~Rq~~l~~~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~di 93 (392)
T PRK07878 14 ELTRDEVARYSRHLIIPDVGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDV 93 (392)
T ss_pred CCCHHHHHHhhheechhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcC
Confidence 4556677999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHhhCCCcEEEEEecCCCh----hhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEEeeecceeEE
Q 001747 85 GKNRALASVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGS 160 (1018)
Q Consensus 85 Gk~ka~a~~~~L~elNp~V~v~~~~~~l~~----~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~~~~~G~~G~ 160 (1018)
|++||++++++|+++||+|+|+++...++. +++++||+||+|.++...+..+|++|++++ +|||++++.|++|+
T Consensus 94 G~~Ka~~a~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~--~p~v~~~~~g~~G~ 171 (392)
T PRK07878 94 GRSKAQSARDSIVEINPLVNVRLHEFRLDPSNAVELFSQYDLILDGTDNFATRYLVNDAAVLAG--KPYVWGSIYRFEGQ 171 (392)
T ss_pred CChHHHHHHHHHHHhCCCcEEEEEeccCChhHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEEeccCEEE
Confidence 999999999999999999999999888764 578899999999999999999999999999 99999999999999
Q ss_pred EEee
Q 001747 161 VFCD 164 (1018)
Q Consensus 161 vf~d 164 (1018)
+++-
T Consensus 172 v~~~ 175 (392)
T PRK07878 172 ASVF 175 (392)
T ss_pred EEEE
Confidence 9854
No 26
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=100.00 E-value=8.5e-34 Score=310.34 Aligned_cols=180 Identities=22% Similarity=0.339 Sum_probs=163.3
Q ss_pred chhhhhhhcCHHHHHHHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHH
Q 001747 412 RYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKS 491 (1018)
Q Consensus 412 rydrq~~~~G~~~q~~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka 491 (1018)
.||||+++||.++|++|++++|+|+|+||+|||+||||+++|| |+|+|+|.|.++.|||+|||+|+++|||++||
T Consensus 1 lYsRQl~~~G~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGV-----g~itI~D~d~ve~snL~rqf~~~~~dIGk~Ka 75 (286)
T cd01491 1 LYSRQLYVLGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGV-----KSVTLHDTKPCSWSDLSSQFYLREEDIGKNRA 75 (286)
T ss_pred CcccceeccCHHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCC-----CeEEEEcCCccchhhcccCccCChHHhCHHHH
Confidence 4999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCeEEEEecccCCccccccccccccCccEEEEcccChhHHHHHHhhccccccceEecccCCcccceEE
Q 001747 492 TVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQM 571 (1018)
Q Consensus 492 ~va~~~l~~~np~~~i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~~~pli~~g~~g~~g~~~v 571 (1018)
++++++|+++||+++|+++...+ +.++++++|+||+|.|+.++|..+|++|+.+++|+|.+++.|+.|++.+
T Consensus 76 ea~~~~L~eLNp~V~V~~~~~~~--------~~~~l~~fdvVV~~~~~~~~~~~in~~c~~~~ipfI~a~~~G~~G~vf~ 147 (286)
T cd01491 76 EASQARLAELNPYVPVTVSTGPL--------TTDELLKFQVVVLTDASLEDQLKINEFCHSPGIKFISADTRGLFGSIFC 147 (286)
T ss_pred HHHHHHHHHHCCCCEEEEEeccC--------CHHHHhcCCEEEEecCCHHHHHHHHHHHHHcCCEEEEEeccccEEEEEe
Confidence 99999999999999999998653 2467899999999999999999999999999999999999999999877
Q ss_pred EeCcccccccCCC-C-CCCCCCCcccccCCCCChhhHH
Q 001747 572 VIPHLTENYGASR-D-PPEKQAPMCTVHSFPHNIDHCL 607 (1018)
Q Consensus 572 ~ip~~t~~y~~~~-~-~~~~~~p~Ct~~~~P~~~~h~i 607 (1018)
..+ +||.|.. + ++.++++.|.+.+-+..+.||+
T Consensus 148 dfg---~~f~~~d~~ge~p~~~~i~~I~~~~~g~V~~~ 182 (286)
T cd01491 148 DFG---DEFTVYDPNGEEPKSGMISSISKDNPGVVTCL 182 (286)
T ss_pred cCC---CeEEEeCCCCCcCCccceeeeecCCceEEEEE
Confidence 444 6666642 1 2335678888888888888886
No 27
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=100.00 E-value=1.3e-33 Score=296.43 Aligned_cols=155 Identities=26% Similarity=0.447 Sum_probs=144.6
Q ss_pred chhhhhhhcCHHHHHHHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCccc--ccccch
Q 001747 412 RYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRD--WNIGQA 489 (1018)
Q Consensus 412 rydrq~~~~G~~~q~~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~--~diG~~ 489 (1018)
|||||+++||.++|++|+++||+||||||+|||++|+|+++|| |+|+++|.|.|+.+||+|||||++ +|+|++
T Consensus 1 ~y~Rqi~l~G~~~q~~L~~s~VlviG~gglGsevak~L~~~GV-----g~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~ 75 (198)
T cd01485 1 LYDRQIRLWGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGI-----DSITIVDHRLVSTEDLGSNFFLDAEVSNSGMN 75 (198)
T ss_pred CccceeeccCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEECCcCChhcCcccEecccchhhcCch
Confidence 6999999999999999999999999999999999999999999 999999999999999999999998 899999
Q ss_pred HHHHHHHHHHhhCCCCeEEEEecccCCccccccccccccCccEEEEcccChhHHHHHHhhccccccceEecccCCcccce
Q 001747 490 KSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNT 569 (1018)
Q Consensus 490 Ka~va~~~l~~~np~~~i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~~~pli~~g~~g~~g~~ 569 (1018)
|+++++++++++||+++|+++...+....+ ..++||+++|+||+|.|+.++|.++++.|+.+++|+|.+++.|+.|++
T Consensus 76 Ka~~~~~~L~~lNp~v~i~~~~~~~~~~~~--~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v 153 (198)
T cd01485 76 RAAASYEFLQELNPNVKLSIVEEDSLSNDS--NIEEYLQKFTLVIATEENYERTAKVNDVCRKHHIPFISCATYGLIGYA 153 (198)
T ss_pred HHHHHHHHHHHHCCCCEEEEEecccccchh--hHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEE
Confidence 999999999999999999999887752111 235789999999999999999999999999999999999999999998
Q ss_pred EEEe
Q 001747 570 QMVI 573 (1018)
Q Consensus 570 ~v~i 573 (1018)
.+..
T Consensus 154 ~~~~ 157 (198)
T cd01485 154 FFDF 157 (198)
T ss_pred EEch
Confidence 7543
No 28
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=100.00 E-value=1.4e-33 Score=321.85 Aligned_cols=177 Identities=27% Similarity=0.480 Sum_probs=160.6
Q ss_pred cCchhhhhhh--cCHHHHHHHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCccccccc
Q 001747 410 NSRYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 487 (1018)
Q Consensus 410 ~~rydrq~~~--~G~~~q~~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG 487 (1018)
..||+||+++ ||.++|++|++++|+||||||+||+++++|+++|+ |+|+|+|.|.|+.|||+||+||+++|||
T Consensus 19 ~~ry~Rqi~l~~~g~~~q~~l~~~~VliiG~GglG~~v~~~La~~Gv-----g~i~ivD~D~ve~sNL~RQ~l~~~~diG 93 (370)
T PRK05600 19 LRRTARQLALPGFGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGV-----GTITLIDDDTVDVSNIHRQILFGASDVG 93 (370)
T ss_pred HHHhhcccchhhhCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEeCCEEccccccccccCChhHCC
Confidence 3799999999 99999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred chHHHHHHHHHHhhCCCCeEEEEecccCCccccccccccccCccEEEEcccChhHHHHHHhhccccccceEecccCCccc
Q 001747 488 QAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKC 567 (1018)
Q Consensus 488 ~~Ka~va~~~l~~~np~~~i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~~~pli~~g~~g~~g 567 (1018)
++|+++++++++++||+++|+++..++.+++. .++++++|+||+|+||+++|.++++.|+.+++|+|.+++.|+.|
T Consensus 94 ~~Ka~~~~~~l~~~np~v~i~~~~~~i~~~~~----~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~iP~v~~~~~g~~G 169 (370)
T PRK05600 94 RPKVEVAAERLKEIQPDIRVNALRERLTAENA----VELLNGVDLVLDGSDSFATKFLVADAAEITGTPLVWGTVLRFHG 169 (370)
T ss_pred CHHHHHHHHHHHHHCCCCeeEEeeeecCHHHH----HHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecCEE
Confidence 99999999999999999999999998875432 46789999999999999999999999999999999999999999
Q ss_pred ceEEEeCcc---cccccCC-CC-CCCCCCCccc
Q 001747 568 NTQMVIPHL---TENYGAS-RD-PPEKQAPMCT 595 (1018)
Q Consensus 568 ~~~v~ip~~---t~~y~~~-~~-~~~~~~p~Ct 595 (1018)
++.++.|.. ++||.|. ++ |+....+.|.
T Consensus 170 ~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~c~ 202 (370)
T PRK05600 170 ELAVFNSGPDHRGVGLRDLFPEQPSGDSIPDCA 202 (370)
T ss_pred EEEEEecCCCCCCCCcHhhCCCCCccccCCCCc
Confidence 999888753 6799884 33 3333445663
No 29
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=100.00 E-value=1.8e-33 Score=324.70 Aligned_cols=177 Identities=27% Similarity=0.488 Sum_probs=160.3
Q ss_pred cCchhhhhhh--cCHHHHHHHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCccccccc
Q 001747 410 NSRYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 487 (1018)
Q Consensus 410 ~~rydrq~~~--~G~~~q~~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG 487 (1018)
.+||+||+.+ ||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|+|.||.|||+|||||+++|||
T Consensus 20 ~~ry~Rq~~l~~~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~l~~~~diG 94 (392)
T PRK07878 20 VARYSRHLIIPDVGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGV-----GTLGIVEFDVVDESNLQRQVIHGQSDVG 94 (392)
T ss_pred HHHhhheechhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCC-----CeEEEECCCEecCcccccccccChhcCC
Confidence 3799999988 99999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred chHHHHHHHHHHhhCCCCeEEEEecccCCccccccccccccCccEEEEcccChhHHHHHHhhccccccceEecccCCccc
Q 001747 488 QAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKC 567 (1018)
Q Consensus 488 ~~Ka~va~~~l~~~np~~~i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~~~pli~~g~~g~~g 567 (1018)
++|+++++++++++||+++|+++..++..++. .++++++|+||+|+||+.+|.++|+.|+.+++|+|.+++.|+.|
T Consensus 95 ~~Ka~~a~~~l~~~np~v~i~~~~~~i~~~~~----~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~~G 170 (392)
T PRK07878 95 RSKAQSARDSIVEINPLVNVRLHEFRLDPSNA----VELFSQYDLILDGTDNFATRYLVNDAAVLAGKPYVWGSIYRFEG 170 (392)
T ss_pred ChHHHHHHHHHHHhCCCcEEEEEeccCChhHH----HHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCEE
Confidence 99999999999999999999999988875431 46789999999999999999999999999999999999999999
Q ss_pred ceEEEeCc----ccccccCC-CCC-CCCCCCccc
Q 001747 568 NTQMVIPH----LTENYGAS-RDP-PEKQAPMCT 595 (1018)
Q Consensus 568 ~~~v~ip~----~t~~y~~~-~~~-~~~~~p~Ct 595 (1018)
++.++.++ .++||.|. +.+ +....+.|.
T Consensus 171 ~v~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~ 204 (392)
T PRK07878 171 QASVFWEDAPDGLGLNYRDLYPEPPPPGMVPSCA 204 (392)
T ss_pred EEEEEecCCCCCCCCeeeeecCCCCCccCCCCCc
Confidence 99988743 68999995 332 223445563
No 30
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=100.00 E-value=3.5e-33 Score=315.10 Aligned_cols=166 Identities=30% Similarity=0.458 Sum_probs=156.2
Q ss_pred cCchhhhhhh--cCHHHHHHHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCccccccc
Q 001747 410 NSRYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 487 (1018)
Q Consensus 410 ~~rydrq~~~--~G~~~q~~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG 487 (1018)
.+||+||+++ ||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|.|.||.|||+||+||+++|+|
T Consensus 2 ~~rY~Rq~~~~~~G~~~Q~~L~~~~VlIiG~GglGs~va~~La~aGv-----g~i~lvD~D~ve~sNL~RQ~l~~~~d~~ 76 (338)
T PRK12475 2 QERYSRQILFSGIGEEGQRKIREKHVLIVGAGALGAANAEALVRAGI-----GKLTIADRDYVEWSNLQRQQLYTEEDAK 76 (338)
T ss_pred cchhhhhhchhhcCHHHHHhhcCCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEcCCcccccccCccccccHHHcc
Confidence 3699999987 89999999999999999999999999999999999 9999999999999999999999999985
Q ss_pred --chHHHHHHHHHHhhCCCCeEEEEecccCCccccccccccccCccEEEEcccChhHHHHHHhhccccccceEecccCCc
Q 001747 488 --QAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGA 565 (1018)
Q Consensus 488 --~~Ka~va~~~l~~~np~~~i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~~~pli~~g~~g~ 565 (1018)
++|+++|+++++++||+++|+++...+++++ + +++++++|+||+|+||+++|.++++.|+.+++|+|.+|..|+
T Consensus 77 ~g~~Ka~aa~~~l~~inp~v~i~~~~~~~~~~~--~--~~~~~~~DlVid~~D~~~~r~~in~~~~~~~ip~i~~~~~g~ 152 (338)
T PRK12475 77 QKKPKAIAAKEHLRKINSEVEIVPVVTDVTVEE--L--EELVKEVDLIIDATDNFDTRLLINDLSQKYNIPWIYGGCVGS 152 (338)
T ss_pred CCccHHHHHHHHHHHHCCCcEEEEEeccCCHHH--H--HHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEeccc
Confidence 8999999999999999999999988776432 1 456889999999999999999999999999999999999999
Q ss_pred ccceEEEeCcccccccCCC
Q 001747 566 KCNTQMVIPHLTENYGASR 584 (1018)
Q Consensus 566 ~g~~~v~ip~~t~~y~~~~ 584 (1018)
.|++.+++|+.|+||.|..
T Consensus 153 ~G~~~~~~P~~tpC~~Cl~ 171 (338)
T PRK12475 153 YGVTYTIIPGKTPCLRCLM 171 (338)
T ss_pred EEEEEEECCCCCCCHHHhc
Confidence 9999999999999999964
No 31
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=100.00 E-value=2.2e-32 Score=311.40 Aligned_cols=153 Identities=23% Similarity=0.303 Sum_probs=147.0
Q ss_pred Cchhhhhhhhhhhc--cCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCc
Q 001747 9 TDIDEDLHSRQLAV--YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGK 86 (1018)
Q Consensus 9 ~~~~~~~YdRQi~l--~G~~~q~~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk 86 (1018)
.+++.+||+||+++ ||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+|||+++++|+|+
T Consensus 2 ~~~~~~rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~ 81 (355)
T PRK05597 2 KNLDIARYRRQIMLGEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQ 81 (355)
T ss_pred ChHHHhHhhheechhhcCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCC
Confidence 35678999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhCCCcEEEEEecCCCh----hhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEEeeecceeEEEE
Q 001747 87 NRALASVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVF 162 (1018)
Q Consensus 87 ~ka~a~~~~L~elNp~V~v~~~~~~l~~----~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~~~~~G~~G~vf 162 (1018)
+||++++++|+++||+|+|+++...+++ +++++||+||+|.+++..+..+|++|++++ +|||++.+.|+.|+++
T Consensus 82 ~Ka~~a~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c~~~~--ip~v~~~~~g~~g~v~ 159 (355)
T PRK05597 82 PKAESAREAMLALNPDVKVTVSVRRLTWSNALDELRDADVILDGSDNFDTRHLASWAAARLG--IPHVWASILGFDAQLS 159 (355)
T ss_pred hHHHHHHHHHHHHCCCcEEEEEEeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEEEecCeEEEE
Confidence 9999999999999999999999888874 478999999999999999999999999999 9999999999999988
Q ss_pred e
Q 001747 163 C 163 (1018)
Q Consensus 163 ~ 163 (1018)
+
T Consensus 160 ~ 160 (355)
T PRK05597 160 V 160 (355)
T ss_pred E
Confidence 5
No 32
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=100.00 E-value=7.5e-33 Score=312.57 Aligned_cols=165 Identities=30% Similarity=0.433 Sum_probs=155.7
Q ss_pred cCchhhhhhh--cCHHHHHHHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCccccccc
Q 001747 410 NSRYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 487 (1018)
Q Consensus 410 ~~rydrq~~~--~G~~~q~~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG 487 (1018)
++||+||+++ ||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|.|.||.|||+||+||+++|||
T Consensus 2 ~~rY~Rq~~l~~~G~~~Q~~L~~~~VlVvG~GglGs~va~~La~aGv-----g~i~lvD~D~Ve~sNL~RQ~l~~~~dig 76 (339)
T PRK07688 2 NERYSRQELFSPIGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGV-----GKVTIVDRDYVEWSNLQRQQLYTESDVK 76 (339)
T ss_pred cchhhhhhchhhcCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCC-----CeEEEEeCCccCHHHcCccccccHHHhc
Confidence 4799999988 99999999999999999999999999999999999 9999999999999999999999999995
Q ss_pred --chHHHHHHHHHHhhCCCCeEEEEecccCCccccccccccccCccEEEEcccChhHHHHHHhhccccccceEecccCCc
Q 001747 488 --QAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGA 565 (1018)
Q Consensus 488 --~~Ka~va~~~l~~~np~~~i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~~~pli~~g~~g~ 565 (1018)
++|+++++++++++||+++|+++...+++++. .++++++|+||+|+||+++|.++++.|+.+++|+|.+++.|+
T Consensus 77 ~g~~Ka~aa~~~l~~inp~v~v~~~~~~~~~~~~----~~~~~~~DlVid~~Dn~~~r~~ln~~~~~~~iP~i~~~~~g~ 152 (339)
T PRK07688 77 NNLPKAVAAKKRLEEINSDVRVEAIVQDVTAEEL----EELVTGVDLIIDATDNFETRFIVNDAAQKYGIPWIYGACVGS 152 (339)
T ss_pred CCCcHHHHHHHHHHHHCCCcEEEEEeccCCHHHH----HHHHcCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeeeee
Confidence 59999999999999999999999988865332 356889999999999999999999999999999999999999
Q ss_pred ccceEEEeCcccccccCC
Q 001747 566 KCNTQMVIPHLTENYGAS 583 (1018)
Q Consensus 566 ~g~~~v~ip~~t~~y~~~ 583 (1018)
.|++.++.|+.++||.|.
T Consensus 153 ~G~~~~~~p~~~pC~~Cl 170 (339)
T PRK07688 153 YGLSYTIIPGKTPCLRCL 170 (339)
T ss_pred eeEEEEECCCCCCCeEee
Confidence 999999999999999995
No 33
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=99.97 E-value=1.3e-31 Score=296.58 Aligned_cols=279 Identities=19% Similarity=0.303 Sum_probs=205.5
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEecCCCh
Q 001747 35 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTK 114 (1018)
Q Consensus 35 ~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~~~l~~ 114 (1018)
||+|+|+||+|+|++|||+++|||+|+|+|.|.|+.+||+||||++++|||++||++++++|+++||+|+|+++...+.+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~ 80 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD 80 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999877653
Q ss_pred -----hhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEEeeecceeEEEEeecCCceEEec-CCCCCCcceeeeeec
Q 001747 115 -----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFGPEFTVVD-VDGEDPHTGIIASIS 188 (1018)
Q Consensus 115 -----~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~~~~~G~~G~vf~d~g~~~~v~d-~~ge~p~~~~i~~i~ 188 (1018)
+++++||+||.|.++.+.+..+|++|+.++ +|||.+++.|++|++++++++.+.+.+ ..+++|.+..+..|.
T Consensus 81 ~~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~~~~--ip~I~~gt~G~~G~v~vi~p~~t~c~~c~~~~~~~~~pictI~ 158 (312)
T cd01489 81 PDFNVEFFKQFDLVFNALDNLAARRHVNKMCLAAD--VPLIESGTTGFLGQVQVIKKGKTECYECQPKETPKTFPVCTIR 158 (312)
T ss_pred ccchHHHHhcCCEEEECCCCHHHHHHHHHHHHHCC--CCEEEEecCcceeEEEEEcCCCCCccCCCCCCCCCcCCcceec
Confidence 689999999999999999999999999999 999999999999999999988776666 667777777777777
Q ss_pred cCCCceeecccccccccccCCeeEEEEeecccccCCCCCccccccCCceeeeccccccccceeecceEEEeeCCeeecCC
Q 001747 189 NDNPALVSCVDDERLEFQDGDLVVFSEVHGMTELNDGKPRKIKSARPYSFTLEEDTTNYGTYVKGGIVTQVKQPKVLNFK 268 (1018)
Q Consensus 189 ~~~~~~v~~~~~~~~~l~dgd~v~f~ev~gm~~ln~~~~~~i~~~~~~~~~i~~dt~~f~~y~~gg~~~qvk~~~~~~f~ 268 (1018)
+.....+++....++.++ .|.. .| ..
T Consensus 159 ~~p~~~~hci~~a~~~f~-----~~~~-------------------~f------------------------------~~ 184 (312)
T cd01489 159 STPSQPIHCIVWAKSLFF-----LFNK-------------------VF------------------------------KD 184 (312)
T ss_pred CCCCCCEeehhHHHHHHH-----HHHH-------------------HH------------------------------HH
Confidence 665566666554333222 0000 00 00
Q ss_pred chHHhhcCCCCcccccCccCCCCChHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHH
Q 001747 269 PLREALEDPGDFLLSDFSKFDRPPPLHLAFQALDKFVSELGRFPVAGSEEDAQKLISVATNINESLGDGRVEDINTKLLR 348 (1018)
Q Consensus 269 sL~~~l~~p~~~~~~d~~k~~~~~~l~~~~~al~~F~~~~gr~P~~~~~~D~~~l~~~~~~i~~~~~~~~~~~i~~~~i~ 348 (1018)
++++.+... .-|.....+.++ .|.. -.+ ...+..+.+.+.+.++.....++. ...+...++
T Consensus 185 ~i~~l~~~~-----~~w~~~~~p~p~--------~~~~--~~f-dkDd~~~~~~v~~~a~lRa~~f~I---~~~~~~~~k 245 (312)
T cd01489 185 DIERLLSME-----ELWKTRKPPVPL--------SWKE--LTF-DKDDQDALDFVAAAANLRSHVFGI---PMKSRFDIK 245 (312)
T ss_pred HHHHHHhhh-----hhhcCCCCCCCC--------CCCC--cCc-CCCCHHHHHHHHHHHHHHHHHcCC---CCCCHHHHH
Confidence 111111100 000000000000 0000 000 011234455555566655555553 445667788
Q ss_pred HHHhhcccccCchhhhhhhhhhhhHhhhhcCCccccceee
Q 001747 349 HFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLYQFF 388 (1018)
Q Consensus 349 ~~~~~~~~el~pvaA~iGGiaAQEVIK~iT~kf~Pi~n~~ 388 (1018)
.++...=..++.+.|+++|++..|++|.++++..-.++.|
T Consensus 246 ~i~g~IiPaiatTnaivag~~~~e~~k~~~~~~~~~~~~~ 285 (312)
T cd01489 246 QMAGNIIPAIATTNAIIAGLIVLEALKVLSGDKEQCRTVF 285 (312)
T ss_pred HHhccccchhhHHHHHHHHHHHHHHHHHHhhhHHHhhhHh
Confidence 8888777788999999999999999999999866666543
No 34
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=99.97 E-value=3e-31 Score=287.38 Aligned_cols=158 Identities=21% Similarity=0.319 Sum_probs=148.8
Q ss_pred CCCCchhhhhhhhhhhc--cCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCc
Q 001747 6 SNQTDIDEDLHSRQLAV--YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDND 83 (1018)
Q Consensus 6 ~~~~~~~~~~YdRQi~l--~G~~~q~~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~d 83 (1018)
+..++.+.+||+||+++ ||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+||||++++|
T Consensus 3 ~~l~~~~~~rY~Rqi~l~~~g~~~Q~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~d 82 (245)
T PRK05690 3 AELSDEEMLRYNRQIILRGFDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDAT 82 (245)
T ss_pred CCCCHHHHHHHHHhccchhcCHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhh
Confidence 34566778999999988 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHHHhhCCCcEEEEEecCCCh----hhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEEeeecceeE
Q 001747 84 IGKNRALASVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFG 159 (1018)
Q Consensus 84 iGk~ka~a~~~~L~elNp~V~v~~~~~~l~~----~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~~~~~G~~G 159 (1018)
+|++||++++++|+++||+++|+++...+++ +++++||+||+|.++.+.+..+|++|++++ +|||++++.|+.|
T Consensus 83 vG~~Ka~~a~~~l~~lnp~v~i~~~~~~i~~~~~~~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~--ip~v~~~~~g~~G 160 (245)
T PRK05690 83 IGQPKVESARAALARINPHIAIETINARLDDDELAALIAGHDLVLDCTDNVATRNQLNRACFAAK--KPLVSGAAIRMEG 160 (245)
T ss_pred CCChHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHHHhC--CEEEEeeeccCCc
Confidence 9999999999999999999999999988865 468899999999999999999999999999 9999999999999
Q ss_pred EEEeec
Q 001747 160 SVFCDF 165 (1018)
Q Consensus 160 ~vf~d~ 165 (1018)
++.+-.
T Consensus 161 ~v~~~~ 166 (245)
T PRK05690 161 QVTVFT 166 (245)
T ss_pred eEEEEe
Confidence 987643
No 35
>PRK08223 hypothetical protein; Validated
Probab=99.97 E-value=3.1e-31 Score=288.37 Aligned_cols=163 Identities=16% Similarity=0.159 Sum_probs=149.1
Q ss_pred hhhhhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHH
Q 001747 12 DEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALA 91 (1018)
Q Consensus 12 ~~~~YdRQi~l~G~~~q~~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a 91 (1018)
-+++|+||+.++|.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+|||+++++|+|++||++
T Consensus 6 ~~~~ysRq~~~iG~e~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~ 85 (287)
T PRK08223 6 YDEAFCRNLGWITPTEQQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEV 85 (287)
T ss_pred HHHHHhhhhhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHH
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCcEEEEEecCCCh----hhccCCceEEEcccCH--HHHHHHHHHHHhcCCCceeEEeeecceeEEEEeec
Q 001747 92 SVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISL--DKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDF 165 (1018)
Q Consensus 92 ~~~~L~elNp~V~v~~~~~~l~~----~~~~~~dvVI~~~~~~--~~~~~ln~~c~~~~~~i~fi~~~~~G~~G~vf~d~ 165 (1018)
++++|+++||+++|+++...+++ ++++++|+||++.|++ +++..+|++|++++ ||||++++.|+.|++.+-.
T Consensus 86 a~~~l~~iNP~v~V~~~~~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~--iP~V~~~~~g~~gqv~v~~ 163 (287)
T PRK08223 86 LAEMVRDINPELEIRAFPEGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRG--IPALTAAPLGMGTALLVFD 163 (287)
T ss_pred HHHHHHHHCCCCEEEEEecccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcC--CCEEEEeccCCeEEEEEEc
Confidence 99999999999999999988865 4688999999999975 89999999999999 9999999999999987655
Q ss_pred CCceEEecCCC
Q 001747 166 GPEFTVVDVDG 176 (1018)
Q Consensus 166 g~~~~v~d~~g 176 (1018)
++..++.|-.+
T Consensus 164 p~~p~~~~~f~ 174 (287)
T PRK08223 164 PGGMSFDDYFD 174 (287)
T ss_pred CCCCchhhhcC
Confidence 43444444333
No 36
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=99.97 E-value=4.6e-31 Score=278.23 Aligned_cols=149 Identities=27% Similarity=0.430 Sum_probs=143.4
Q ss_pred hhhhhhhc--cCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHH
Q 001747 15 LHSRQLAV--YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALAS 92 (1018)
Q Consensus 15 ~YdRQi~l--~G~~~q~~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~ 92 (1018)
|||||+++ ||.++|++|++++|+|+|+||+|+++|++|+++|||+++|+|+|.|+.+||+||||++++|+|++||+++
T Consensus 1 rY~Rqi~l~~~g~~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~ 80 (202)
T TIGR02356 1 RYARQLLLPDIGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVA 80 (202)
T ss_pred CCcceecchhcCHHHHHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHH
Confidence 79999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCcEEEEEecCCCh----hhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEEeeecceeEEEEeec
Q 001747 93 VQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDF 165 (1018)
Q Consensus 93 ~~~L~elNp~V~v~~~~~~l~~----~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~~~~~G~~G~vf~d~ 165 (1018)
+++|+++||+++++++...+++ ++++++|+||+|.++.+.+..+|++|++++ +|||.+++.|++|++++-.
T Consensus 81 ~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~--ip~i~~~~~g~~G~~~~~~ 155 (202)
T TIGR02356 81 AQRLRELNSDIQVTALKERVTAENLELLINNVDLVLDCTDNFATRYLINDACVALG--TPLISAAVVGFGGQLMVFD 155 (202)
T ss_pred HHHHHHhCCCCEEEEehhcCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEEeccCeEEEEEEe
Confidence 9999999999999999888765 368899999999999999999999999999 9999999999999998754
No 37
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=99.97 E-value=2.3e-31 Score=284.53 Aligned_cols=161 Identities=27% Similarity=0.409 Sum_probs=143.2
Q ss_pred HhcCcEEEEccCcchHHHHHHHHhcCccc---C-CCc-cEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhC
Q 001747 428 LEDAKVFIVGSGALGCEFLKNVALMGVSC---G-NQG-KLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSIN 502 (1018)
Q Consensus 428 l~~~~v~vvG~GgiG~e~lk~La~~Gv~~---~-~~g-~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~n 502 (1018)
-+..+|+||||||+||+++++||++|+++ | +.| +|+|+|+|+||.|||||| +|+++|||++||+++++++++++
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQ-lf~~~dVG~~Ka~v~~~ri~~~~ 87 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQ-AFYPADVGQNKAIVLVNRLNQAM 87 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcc-cCChhHCCcHHHHHHHHHHHhcc
Confidence 46789999999999999999999998643 2 113 999999999999999999 68889999999999999999998
Q ss_pred CCCeEEEEecccCCccccccccccccCccEEEEcccChhHHHHHHhhccc--c-ccceEeccc--------CCc-----c
Q 001747 503 PRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLY--F-QKPLLESGT--------LGA-----K 566 (1018)
Q Consensus 503 p~~~i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~--~-~~pli~~g~--------~g~-----~ 566 (1018)
+++|+++..++.++ .++.++|+||+|+||+++|.++++.|++ + .+|++++|+ .|. +
T Consensus 88 -~~~i~a~~~~~~~~-------~~~~~~DiVi~avDn~~aR~~l~~~~~~~~~~~~~~ld~Gn~~~~gqv~~g~i~~~~k 159 (244)
T TIGR03736 88 -GTDWTAHPERVERS-------STLHRPDIVIGCVDNRAARLAILRAFEGGYSGYAYWLDLGNRADDGQVILGQVPSRAK 159 (244)
T ss_pred -CceEEEEEeeeCch-------hhhcCCCEEEECCCCHHHHHHHHHHHHHhcccccceecccCCCCCCcEEEEecccccc
Confidence 89999999888762 2356899999999999999999999988 3 489999999 677 8
Q ss_pred cceEEEeCcccccccCCCCC---CCCCCCccccc
Q 001747 567 CNTQMVIPHLTENYGASRDP---PEKQAPMCTVH 597 (1018)
Q Consensus 567 g~~~v~ip~~t~~y~~~~~~---~~~~~p~Ct~~ 597 (1018)
|++++++|+.|+||.|..+| ++.+.|+||++
T Consensus 160 ~~~~~~lP~vte~y~~~~d~~~~~~~~~PsCsla 193 (244)
T TIGR03736 160 GENRLRLPHVGELFPELIDPSVDPDDDRPSCSLA 193 (244)
T ss_pred cCCceecCCchhhCcccccCccCCCCCCCCchHH
Confidence 99999999999999999888 77889999965
No 38
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.97 E-value=2.9e-31 Score=305.61 Aligned_cols=177 Identities=29% Similarity=0.547 Sum_probs=160.6
Q ss_pred Cchhhhhhh--cCHHHHHHHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccc
Q 001747 411 SRYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 488 (1018)
Q Consensus 411 ~rydrq~~~--~G~~~q~~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~ 488 (1018)
.||+||+.+ ||.++|++|.+++|+|+||||+||+++++|+++|| |+|+|+|.|.|+.|||+||+||+++|||+
T Consensus 114 ~~y~r~i~l~~~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gv-----g~i~lvD~d~v~~sNl~Rq~l~~~~diG~ 188 (376)
T PRK08762 114 ERYSRHLRLPEVGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGV-----GTLGIVDHDVVDRSNLQRQILHTEDRVGQ 188 (376)
T ss_pred HHHHHhcchhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCC-----CeEEEEeCCEecchhhccccccchhhCCC
Confidence 799999998 99999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhCCCCeEEEEecccCCccccccccccccCccEEEEcccChhHHHHHHhhccccccceEecccCCcccc
Q 001747 489 AKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCN 568 (1018)
Q Consensus 489 ~Ka~va~~~l~~~np~~~i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~~~pli~~g~~g~~g~ 568 (1018)
+|+++++++++++||+++|+.+...+.+++. .++++++|+||+|+||+++|.++++.|+.+++|+|.+++.|+.|+
T Consensus 189 ~Ka~~~~~~l~~~np~v~v~~~~~~~~~~~~----~~~~~~~D~Vv~~~d~~~~r~~ln~~~~~~~ip~i~~~~~g~~g~ 264 (376)
T PRK08762 189 PKVDSAAQRLAALNPDVQVEAVQERVTSDNV----EALLQDVDVVVDGADNFPTRYLLNDACVKLGKPLVYGAVFRFEGQ 264 (376)
T ss_pred cHHHHHHHHHHHHCCCCEEEEEeccCChHHH----HHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEE
Confidence 9999999999999999999999888765321 456789999999999999999999999999999999999999999
Q ss_pred eEEEeCcc----cccccCC-CC-CCCCCCCcccc
Q 001747 569 TQMVIPHL----TENYGAS-RD-PPEKQAPMCTV 596 (1018)
Q Consensus 569 ~~v~ip~~----t~~y~~~-~~-~~~~~~p~Ct~ 596 (1018)
+.++.|+. ++||.|. +. |+....|.|..
T Consensus 265 v~~~~p~~~~~~~~c~~c~~~~~~~~~~~~~~~~ 298 (376)
T PRK08762 265 VSVFDAGRQRGQAPCYRCLFPEPPPPELAPSCAE 298 (376)
T ss_pred EEEEeCCCCCCCCCCHhhcCCCCCCcccCCCCcc
Confidence 99999876 8999995 33 22223455643
No 39
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=99.97 E-value=3.1e-31 Score=290.01 Aligned_cols=166 Identities=36% Similarity=0.603 Sum_probs=156.7
Q ss_pred cCchhhhhhh--cCHHHHHHHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCccccccc
Q 001747 410 NSRYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 487 (1018)
Q Consensus 410 ~~rydrq~~~--~G~~~q~~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG 487 (1018)
..||+||+.+ +|.++|++|.++||+|||+||+||+++++|+++|+ |+++|+|.|+|+.|||+||++|+++|||
T Consensus 8 ~~ry~Rqi~l~~~~~~~q~~l~~s~vlvvG~GglG~~~~~~la~aGv-----g~l~i~D~d~v~~snL~rq~~~~~~dig 82 (254)
T COG0476 8 IERYSRQILLPGIGGEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGV-----GKLTIVDFDTVELSNLQRQFLFTEADVG 82 (254)
T ss_pred HHhhcceeeecccCHHHHHHHhhCCEEEEecChhHHHHHHHHHHcCC-----CeEEEEcCCcccccccCceeeecccccC
Confidence 3799999998 55556999999999999999999999999999999 9999999999999999999999999999
Q ss_pred chHHHHHHHHHHhhCCCCeEEEEecccCCccccccccccccCccEEEEcccChhHHHHHHhhccccccceEecccCCccc
Q 001747 488 QAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKC 567 (1018)
Q Consensus 488 ~~Ka~va~~~l~~~np~~~i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~~~pli~~g~~g~~g 567 (1018)
++|++++++.+.++||.+.++++...++.++. .+++.++|+|++|+||+.+|..+|+.|+.+++|++++|+.|+.|
T Consensus 83 ~~Ka~~a~~~l~~ln~~v~v~~~~~~l~~~~~----~~~~~~~d~v~d~~dn~~~r~~iN~~~~~~~~pli~~~~~~~~g 158 (254)
T COG0476 83 KPKAEVAAKALRKLNPLVEVVAYLERLDEENA----EELIAQFDVVLDCTDNFETRYLINDACVKLGIPLVHGGAIGFEG 158 (254)
T ss_pred CcHHHHHHHHHHHhCCCCeEEEeecccChhhH----HHHhccCCEEEECCCCHHHHHHHHHHHHHhCCCeEeeeeccceE
Confidence 99999999999999999999999999876543 46789999999999999999999999999999999999999999
Q ss_pred ceEEEeCc-ccccccCCC
Q 001747 568 NTQMVIPH-LTENYGASR 584 (1018)
Q Consensus 568 ~~~v~ip~-~t~~y~~~~ 584 (1018)
++.+++|. .++||.|.-
T Consensus 159 ~~~~~~~~~~~~c~~~~~ 176 (254)
T COG0476 159 QVTVIIPGDKTPCYRCLF 176 (254)
T ss_pred EEEEEecCCCCCcccccC
Confidence 99999999 599999954
No 40
>PRK07411 hypothetical protein; Validated
Probab=99.97 E-value=1.1e-30 Score=300.94 Aligned_cols=158 Identities=19% Similarity=0.251 Sum_probs=150.6
Q ss_pred CCCCCchhhhhhhhhhhc--cCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcC
Q 001747 5 NSNQTDIDEDLHSRQLAV--YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDN 82 (1018)
Q Consensus 5 ~~~~~~~~~~~YdRQi~l--~G~~~q~~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~ 82 (1018)
...+++.+.+||+||+++ ||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+|||+++++
T Consensus 8 ~~~l~~~~~~ry~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~ 87 (390)
T PRK07411 8 EIQLSKDEYERYSRHLILPEVGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTS 87 (390)
T ss_pred cccCCHHHHHHhhceechhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChH
Confidence 445677788999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchHHHHHHHHHHhhCCCcEEEEEecCCCh----hhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEEeeeccee
Q 001747 83 DIGKNRALASVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLF 158 (1018)
Q Consensus 83 diGk~ka~a~~~~L~elNp~V~v~~~~~~l~~----~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~~~~~G~~ 158 (1018)
|+|++||++++++|+++||.|+|+++...+++ +++.+||+||+|.++.+.+..||++|++.+ +|+|++++.|++
T Consensus 88 dvG~~Ka~~a~~~l~~~np~v~v~~~~~~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~--~p~v~~~~~g~~ 165 (390)
T PRK07411 88 WVGKPKIESAKNRILEINPYCQVDLYETRLSSENALDILAPYDVVVDGTDNFPTRYLVNDACVLLN--KPNVYGSIFRFE 165 (390)
T ss_pred HCCCcHHHHHHHHHHHHCCCCeEEEEecccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEEEccCE
Confidence 99999999999999999999999999988865 468899999999999999999999999999 999999999999
Q ss_pred EEEEee
Q 001747 159 GSVFCD 164 (1018)
Q Consensus 159 G~vf~d 164 (1018)
|++.+-
T Consensus 166 g~~~v~ 171 (390)
T PRK07411 166 GQATVF 171 (390)
T ss_pred EEEEEE
Confidence 998865
No 41
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=99.97 E-value=1.1e-30 Score=280.94 Aligned_cols=150 Identities=26% Similarity=0.400 Sum_probs=143.1
Q ss_pred hhhhhhhc--cCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHH
Q 001747 15 LHSRQLAV--YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALAS 92 (1018)
Q Consensus 15 ~YdRQi~l--~G~~~q~~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~ 92 (1018)
|||||+++ ||.++|++|++++|+|+|+||+|+++|++|+++|||+++|+|+|.|+.+||+||||++++|+|++||+++
T Consensus 1 rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~ 80 (228)
T cd00757 1 RYSRQILLPEIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAA 80 (228)
T ss_pred CcceeechhhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHH
Confidence 79999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCcEEEEEecCCCh----hhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEEeeecceeEEEEeecC
Q 001747 93 VQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFG 166 (1018)
Q Consensus 93 ~~~L~elNp~V~v~~~~~~l~~----~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~~~~~G~~G~vf~d~g 166 (1018)
+++|+++||+++|+.+...+++ +++.++|+||+|.++.+.+..++++|++++ +|||.+++.|+.|++..-.+
T Consensus 81 ~~~l~~~np~~~i~~~~~~i~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~--ip~i~~g~~g~~g~v~~~~p 156 (228)
T cd00757 81 AERLRAINPDVEIEAYNERLDAENAEELIAGYDLVLDCTDNFATRYLINDACVKLG--KPLVSGAVLGFEGQVTVFIP 156 (228)
T ss_pred HHHHHHhCCCCEEEEecceeCHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHcC--CCEEEEEeccCEEEEEEECC
Confidence 9999999999999999887754 467889999999999999999999999999 99999999999999876543
No 42
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.97 E-value=6.8e-32 Score=287.98 Aligned_cols=169 Identities=28% Similarity=0.468 Sum_probs=158.1
Q ss_pred Cchhhhhhh--cCHHHHHHHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccc
Q 001747 411 SRYDAQISV--FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 488 (1018)
Q Consensus 411 ~rydrq~~~--~G~~~q~~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~ 488 (1018)
.||+||+.+ ||..+|.+|.+++|+||||||+||..+..|+.+|+ |+|-|||.|.||.|||.||.++++..+|+
T Consensus 45 ~RYsRQlilpe~gV~GQ~~Lk~s~VLVVGaGGLGcPa~~YLaaaGv-----G~lGiVD~DvVe~sNlhRQVlh~ea~vg~ 119 (427)
T KOG2017|consen 45 LRYSRQLILPEFGVHGQLSLKNSSVLVVGAGGLGCPAAQYLAAAGV-----GRLGIVDYDVVELSNLHRQVLHTEARVGM 119 (427)
T ss_pred HhhhheeeccccccccccccCCccEEEEccCCCCCHHHHHHHHcCC-----CeecccccceeehhhHHHHHhhhhhhhhh
Confidence 899999988 99999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhCCCCeEEEEecccCCccccccccccccCccEEEEcccChhHHHHHHhhccccccceEecccCCcccc
Q 001747 489 AKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCN 568 (1018)
Q Consensus 489 ~Ka~va~~~l~~~np~~~i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~~~pli~~g~~g~~g~ 568 (1018)
.||+.|+..++++||+++|..|.+.+.+.+. -+.+++||+|+||+||+.+|+.+++.|+..++|+|.+..+++.|+
T Consensus 120 ~Ka~sA~~~lr~lNs~v~v~~y~~~L~~sNa----~~Ii~~YdvVlDCTDN~~TRYLisD~CVlLgkpLVSgSaLr~EGQ 195 (427)
T KOG2017|consen 120 HKAESAAAFLRRLNSHVEVQTYNEFLSSSNA----FDIIKQYDVVLDCTDNVPTRYLISDVCVLLGKPLVSGSALRWEGQ 195 (427)
T ss_pred HHHHHHHHHHHhcCCCceeeechhhccchhH----HHHhhccceEEEcCCCccchhhhhhHHHHcCCcccccccccccce
Confidence 9999999999999999999999999987654 256899999999999999999999999999999999999999999
Q ss_pred eEEEeCcccccccC-CCCCCC
Q 001747 569 TQMVIPHLTENYGA-SRDPPE 588 (1018)
Q Consensus 569 ~~v~ip~~t~~y~~-~~~~~~ 588 (1018)
..++--...+||+| .+.||.
T Consensus 196 LtvYny~~GPCYRClFP~Ppp 216 (427)
T KOG2017|consen 196 LTVYNYNNGPCYRCLFPNPPP 216 (427)
T ss_pred eEEeecCCCceeeecCCCCcC
Confidence 87765567999999 455443
No 43
>PRK08328 hypothetical protein; Provisional
Probab=99.97 E-value=4.3e-30 Score=276.17 Aligned_cols=156 Identities=27% Similarity=0.448 Sum_probs=146.7
Q ss_pred CchhhhhhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCc-h
Q 001747 9 TDIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGK-N 87 (1018)
Q Consensus 9 ~~~~~~~YdRQi~l~G~~~q~~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk-~ 87 (1018)
++.+.+||+||+++||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+|||+++++|+|+ +
T Consensus 3 ~~~~~~ry~Rq~~~~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~ 82 (231)
T PRK08328 3 SERELERYDRQIMIFGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNP 82 (231)
T ss_pred CHHHHHHHhhHHHhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchH
Confidence 456678999999999999999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred HHHHHHHHHHhhCCCcEEEEEecCCCh----hhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEEeeecceeEEEEe
Q 001747 88 RALASVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFC 163 (1018)
Q Consensus 88 ka~a~~~~L~elNp~V~v~~~~~~l~~----~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~~~~~G~~G~vf~ 163 (1018)
|+++++++|+++||+++|+++...+++ ++++++|+||+|.++.+.+..++++|++++ +|+|.+++.|++|++++
T Consensus 83 k~~~a~~~l~~~np~v~v~~~~~~~~~~~~~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~--ip~i~g~~~g~~G~v~~ 160 (231)
T PRK08328 83 KPLSAKWKLERFNSDIKIETFVGRLSEENIDEVLKGVDVIVDCLDNFETRYLLDDYAHKKG--IPLVHGAVEGTYGQVTT 160 (231)
T ss_pred HHHHHHHHHHHhCCCCEEEEEeccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEeeccCEEEEEE
Confidence 999999999999999999998887764 368899999999999999999999999999 99999999999999986
Q ss_pred ecC
Q 001747 164 DFG 166 (1018)
Q Consensus 164 d~g 166 (1018)
-.+
T Consensus 161 ~~p 163 (231)
T PRK08328 161 IVP 163 (231)
T ss_pred ECC
Confidence 543
No 44
>PRK14851 hypothetical protein; Provisional
Probab=99.97 E-value=9.1e-31 Score=316.83 Aligned_cols=167 Identities=26% Similarity=0.389 Sum_probs=156.5
Q ss_pred ccCchhhhhhhcCHHHHHHHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccc
Q 001747 409 INSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 488 (1018)
Q Consensus 409 ~~~rydrq~~~~G~~~q~~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~ 488 (1018)
...||+||+.+||.+.|++|++++|+||||||+||+++++|+++|| |+|+|+|+|+||+||||||++|+.+|||+
T Consensus 22 ~~~ry~R~~~l~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GV-----G~l~LvD~D~ve~sNLNRQ~~~~~~dvG~ 96 (679)
T PRK14851 22 REAAFSRNIGLFTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGI-----GRFHIADFDQFEPVNVNRQFGARVPSFGR 96 (679)
T ss_pred HHHHhhhhHHhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHhCC-----CeEEEEcCCEecccccccCcCcChhhCCC
Confidence 3479999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhCCCCeEEEEecccCCccccccccccccCccEEEEcccC--hhHHHHHHhhccccccceEecccCCcc
Q 001747 489 AKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDN--VNARLYVDQRCLYFQKPLLESGTLGAK 566 (1018)
Q Consensus 489 ~Ka~va~~~l~~~np~~~i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn--~~ar~~v~~~c~~~~~pli~~g~~g~~ 566 (1018)
+|+++++++++++||+++|+++...+++++. ++|++++|+||+|+|| .++|.++++.|+.+++|+|.+|+.|+.
T Consensus 97 ~Kv~v~~~~l~~inP~~~I~~~~~~i~~~n~----~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G~~ 172 (679)
T PRK14851 97 PKLAVMKEQALSINPFLEITPFPAGINADNM----DAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLGYS 172 (679)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEecCCChHHH----HHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeccccc
Confidence 9999999999999999999999999976432 5788999999999998 478999999999999999999999999
Q ss_pred cceEEEeCcccccccCCCC
Q 001747 567 CNTQMVIPHLTENYGASRD 585 (1018)
Q Consensus 567 g~~~v~ip~~t~~y~~~~~ 585 (1018)
|++.++.|+ +.||.|.-+
T Consensus 173 g~~~~~~p~-~~~~~~~~~ 190 (679)
T PRK14851 173 SAMLVFTPQ-GMGFDDYFN 190 (679)
T ss_pred ceEEEEcCC-CCCHhHhcc
Confidence 999999997 788877544
No 45
>PF09358 UBA_e1_C: Ubiquitin-activating enzyme e1 C-terminal domain; InterPro: IPR018965 This presumed domain found at the C terminus of Ubiquitin-activating enzyme e1 proteins is functionally uncharacterised. ; PDB: 3CMM_A.
Probab=99.97 E-value=3e-31 Score=255.84 Aligned_cols=123 Identities=44% Similarity=0.839 Sum_probs=98.7
Q ss_pred ccccccccccCcccccCCCCCcccccCCcceeEEeEEEeCCCCcHHHHHHHHHHc-CCceeeeecCCceeecCC-Ccchh
Q 001747 891 YRNTFANLALPLFSMAEPVPPKVIKHRDMSWTVWDRWILKDNPTLRELIQWLKDK-GLNAYSISCGSCLLFNSM-FPRHK 968 (1018)
Q Consensus 891 ~rn~f~nl~~p~~~~~ep~~~~~~~~~~~~~t~Wd~~~~~~~~Tl~~li~~~~~~-~~~~~~i~~g~~~lY~~~-~~~~~ 968 (1018)
|||+|+|||+|+|.||||.+|++.++.+.+||+||||++++++||++||++|+++ |++|+||++|+++||++| .++++
T Consensus 1 yrN~F~NLAlP~~~fsEP~~~~k~k~~~~~~T~WDr~~v~~~~Tl~~li~~~~~~~~lev~ml~~g~~~LY~~f~~~~~~ 80 (125)
T PF09358_consen 1 YRNSFLNLALPFFSFSEPIPAPKTKYNDKEWTLWDRIEVNGDMTLQELIDYFKEKYGLEVTMLSQGVSLLYSSFPPPKHK 80 (125)
T ss_dssp --EEEEETTTTEEEEE---B--EEEETTEEETTT-EEEEES--BHHHHHHHHHHTTS-EEEEEEETTEEEEETT-HHHHH
T ss_pred CccEEEEcCccceeeeeccCCCceEecCccccceeEEEEcCCCCHHHHHHHHHHHhCceEEEEEeCCEEEEecCChhhhH
Confidence 8999999999999999999999999989999999999999999999999999999 999999999999999999 45779
Q ss_pred ccccCcHHHHHHHhhccCCCCceeEEEEEEEeecCCCCccccCeE
Q 001747 969 ERMDKKVVDLAREVAKVELPPYRRHLDVVVACEDDEDNDIDIPLI 1013 (1018)
Q Consensus 969 ~~l~~~l~~l~~~~~~~~l~~~~~~l~l~v~~~d~~~~dv~~P~v 1013 (1018)
+||+++|++|++.+++++++++++||+|+|+|+|++|+||++|+|
T Consensus 81 ~rl~~~i~elv~~v~k~~~~~~~~~l~l~v~~~d~~~edv~vP~i 125 (125)
T PF09358_consen 81 ERLKMPISELVEEVTKKPIPPGQKYLVLEVSCEDEDGEDVEVPYI 125 (125)
T ss_dssp HHTTSBHHHHHHHHTSS---TT--EEEEEEEEE-TTS-EE---EE
T ss_pred HHhCCcHHHHHHHhcCCCCCCCceEEEEEEEEeCCCCCccCCCCC
Confidence 999999999999999999999999999999999999999999997
No 46
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=99.97 E-value=2.1e-29 Score=276.04 Aligned_cols=264 Identities=19% Similarity=0.240 Sum_probs=197.0
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEecCCC-
Q 001747 35 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLT- 113 (1018)
Q Consensus 35 ~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~~~l~- 113 (1018)
||||+|+||+|+|++|||+++|||+|+|+|.|.|+.+||+||||++++|+|++||++++++|+++||.++|+++...+.
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~ 80 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD 80 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999987764
Q ss_pred --hhhccCCceEEEcccCHHHHHHHHHHHHhcC------CCceeEEeeecceeEEEEeecCCce-EEecCCCCCCcc--e
Q 001747 114 --KEQLSDFQAVVFTDISLDKAIEFDDFCHNHQ------PAISFIKAEVRGLFGSVFCDFGPEF-TVVDVDGEDPHT--G 182 (1018)
Q Consensus 114 --~~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~------~~i~fi~~~~~G~~G~vf~d~g~~~-~v~d~~ge~p~~--~ 182 (1018)
++++++||+||++.++.+.|..+|+.|.+.. ..+|||.+++.|+.|++.+..+... ++.+.....|.. .
T Consensus 81 ~~~~f~~~fdvVi~alDn~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G~~G~v~vi~P~~t~C~~C~~d~~p~~~~~ 160 (291)
T cd01488 81 KDEEFYRQFNIIICGLDSIEARRWINGTLVSLLLYEDPESIIPLIDGGTEGFKGHARVILPGITACIECSLDLFPPQVTF 160 (291)
T ss_pred hhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhccccccccCccEEEEEEcccEEEEEEEcCCCCCccccCCCCCCCCCCC
Confidence 4789999999999999999999999875431 1299999999999999988775321 121111111100 0
Q ss_pred eeeeeccCCCceeecccccccccccCCeeEEEEeecccccCCCCCccccccCCceeeeccccccccceeecceEEEeeCC
Q 001747 183 IIASISNDNPALVSCVDDERLEFQDGDLVVFSEVHGMTELNDGKPRKIKSARPYSFTLEEDTTNYGTYVKGGIVTQVKQP 262 (1018)
Q Consensus 183 ~i~~i~~~~~~~v~~~~~~~~~l~dgd~v~f~ev~gm~~ln~~~~~~i~~~~~~~~~i~~dt~~f~~y~~gg~~~qvk~~ 262 (1018)
.+..|. ..|+... .+| .| .
T Consensus 161 p~Cti~------------------------------------~~P~~~~------hci--------~~-----a------ 179 (291)
T cd01488 161 PLCTIA------------------------------------NTPRLPE------HCI--------EY-----A------ 179 (291)
T ss_pred Cccccc------------------------------------CCCCCcc------hhe--------ee-----e------
Confidence 000000 0000000 000 00 0
Q ss_pred eeecCCchHHhhcCCCCcccccCccCCCCChHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 001747 263 KVLNFKPLREALEDPGDFLLSDFSKFDRPPPLHLAFQALDKFVSELGRFPVAGSEEDAQKLISVATNINESLGDGRVEDI 342 (1018)
Q Consensus 263 ~~~~f~sL~~~l~~p~~~~~~d~~k~~~~~~l~~~~~al~~F~~~~gr~P~~~~~~D~~~l~~~~~~i~~~~~~~~~~~i 342 (1018)
+.+.|.. +.| +.--...+.++.+.+.+.|++..++++. +.+
T Consensus 180 ~~~~~~~-----~~~-------------------------------~~~~~~d~~~~~~~i~~~a~~ra~~f~i---~~~ 220 (291)
T cd01488 180 SLIQWPK-----EFP-------------------------------FVPLDGDDPEHIEWLYQKALERAAQFNI---SGV 220 (291)
T ss_pred eeeeccc-----ccC-------------------------------CCcCCCCCHHHHHHHHHHHHHHHHHcCC---Ccc
Confidence 0000100 001 1111223567777888888888777763 456
Q ss_pred CHHHHHHHHhhcccccCchhhhhhhhhhhhHhhhhcCCccccceeeeeecCCCCCC
Q 001747 343 NTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLYQFFYFDSVESLPT 398 (1018)
Q Consensus 343 ~~~~i~~~~~~~~~el~pvaA~iGGiaAQEVIK~iT~kf~Pi~n~~~fD~~e~l~~ 398 (1018)
+-.+++.++...=..++.+.|++||..+-|++|++|+...+++||+.|.|-+++-.
T Consensus 221 ~~~~~~~v~~~iiPai~stnaiia~~~~~~~~k~~~~~~~~~~n~~~~~g~~g~~~ 276 (291)
T cd01488 221 TYSLTQGVVKRIIPAVASTNAIIAAACCLEALKIATDCYENLNNYLMYNGVDGCYT 276 (291)
T ss_pred cHHHHhhhHheeeCccCchHHHHHHHHHHHHHHHHhccccCCCceEEEecCCceEE
Confidence 77888899888888899999999999999999999999999999999999887643
No 47
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=99.97 E-value=4e-30 Score=277.36 Aligned_cols=149 Identities=23% Similarity=0.351 Sum_probs=141.7
Q ss_pred hhhhhhhhhcc--CHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHH
Q 001747 13 EDLHSRQLAVY--GRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRAL 90 (1018)
Q Consensus 13 ~~~YdRQi~l~--G~~~q~~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~ 90 (1018)
.+||+||+++| |.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+.+||+||+|++++|+|++||+
T Consensus 2 ~~ry~Rq~~l~~~g~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~ 81 (240)
T TIGR02355 2 MLRYNRQIILRGFDFDGQEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVE 81 (240)
T ss_pred ccceeeeeecccCCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHH
Confidence 46999999997 5899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCcEEEEEecCCCh----hhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEEeeecceeEEEEe
Q 001747 91 ASVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFC 163 (1018)
Q Consensus 91 a~~~~L~elNp~V~v~~~~~~l~~----~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~~~~~G~~G~vf~ 163 (1018)
+++++|+++||+++|+++...+++ +++.++|+||+|.++.+.+..+|++|++++ +|||++++.|+.|++.+
T Consensus 82 ~a~~~l~~inp~v~i~~~~~~i~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~--ip~v~~~~~g~~G~v~~ 156 (240)
T TIGR02355 82 SAKDALTQINPHIAINPINAKLDDAELAALIAEHDIVVDCTDNVEVRNQLNRQCFAAK--VPLVSGAAIRMEGQVSV 156 (240)
T ss_pred HHHHHHHHHCCCcEEEEEeccCCHHHHHHHhhcCCEEEEcCCCHHHHHHHHHHHHHcC--CCEEEEEecccEeEEEE
Confidence 999999999999999999888765 468899999999999999999999999999 99999999999998753
No 48
>PRK14852 hypothetical protein; Provisional
Probab=99.97 E-value=1.8e-30 Score=316.84 Aligned_cols=165 Identities=25% Similarity=0.426 Sum_probs=155.4
Q ss_pred ccCchhhhhhhcCHHHHHHHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccc
Q 001747 409 INSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 488 (1018)
Q Consensus 409 ~~~rydrq~~~~G~~~q~~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~ 488 (1018)
...||+||+.+||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|+|+||.||||||++|+.+|||+
T Consensus 311 ~~~ry~Rqi~lig~e~Q~kL~~srVlVvGlGGlGs~ia~~LAraGV-----G~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~ 385 (989)
T PRK14852 311 TDIAFSRNLGLVDYAGQRRLLRSRVAIAGLGGVGGIHLMTLARTGI-----GNFNLADFDAYSPVNLNRQYGASIASFGR 385 (989)
T ss_pred HHHHhhchHhhcCHHHHHHHhcCcEEEECCcHHHHHHHHHHHHcCC-----CeEEEEcCCEecccccccccCCChhhCCC
Confidence 3579999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhCCCCeEEEEecccCCccccccccccccCccEEEEcccCh--hHHHHHHhhccccccceEecccCCcc
Q 001747 489 AKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNV--NARLYVDQRCLYFQKPLLESGTLGAK 566 (1018)
Q Consensus 489 ~Ka~va~~~l~~~np~~~i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~--~ar~~v~~~c~~~~~pli~~g~~g~~ 566 (1018)
+|+++++++++++||+++|+++...+.+++. ++|++++|+||+|+|++ ++|.+++..|+.+++|+|.+|+.|++
T Consensus 386 ~Kaevaa~~l~~INP~v~I~~~~~~I~~en~----~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G~~ 461 (989)
T PRK14852 386 GKLDVMTERALSVNPFLDIRSFPEGVAAETI----DAFLKDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLGYS 461 (989)
T ss_pred hHHHHHHHHHHHHCCCCeEEEEecCCCHHHH----HHHhhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeeccccC
Confidence 9999999999999999999999999876543 57899999999999985 67889999999999999999999999
Q ss_pred cceEEEeCcccccccCC
Q 001747 567 CNTQMVIPHLTENYGAS 583 (1018)
Q Consensus 567 g~~~v~ip~~t~~y~~~ 583 (1018)
|++.++.|+ ..||.|.
T Consensus 462 g~v~v~~p~-~~~~~~~ 477 (989)
T PRK14852 462 CALLVFMPG-GMNFDSY 477 (989)
T ss_pred eeEEEEcCC-CCCHHHh
Confidence 999999987 5888885
No 49
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.97 E-value=6.4e-30 Score=291.72 Aligned_cols=156 Identities=24% Similarity=0.379 Sum_probs=148.6
Q ss_pred CCCchhhhhhhhhhhc--cCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCcc
Q 001747 7 NQTDIDEDLHSRQLAV--YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDI 84 (1018)
Q Consensus 7 ~~~~~~~~~YdRQi~l--~G~~~q~~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~di 84 (1018)
.+++.+.+||+||+++ ||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+|||+++++|+
T Consensus 13 ~~~~~e~~ry~Rqi~l~~~g~~~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~di 92 (370)
T PRK05600 13 QLPTSELRRTARQLALPGFGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDV 92 (370)
T ss_pred CCCHHHHHHhhcccchhhhCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHC
Confidence 3566778899999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHhhCCCcEEEEEecCCCh----hhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEEeeecceeEE
Q 001747 85 GKNRALASVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGS 160 (1018)
Q Consensus 85 Gk~ka~a~~~~L~elNp~V~v~~~~~~l~~----~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~~~~~G~~G~ 160 (1018)
|++||++++++|+++||+++|+++...+++ ++++++|+||+|.++++.+..+|++|++++ +|||++++.|+.|+
T Consensus 93 G~~Ka~~~~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~--iP~v~~~~~g~~G~ 170 (370)
T PRK05600 93 GRPKVEVAAERLKEIQPDIRVNALRERLTAENAVELLNGVDLVLDGSDSFATKFLVADAAEITG--TPLVWGTVLRFHGE 170 (370)
T ss_pred CCHHHHHHHHHHHHHCCCCeeEEeeeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEEEecCEEE
Confidence 999999999999999999999999988875 478899999999999999999999999999 99999999999999
Q ss_pred EEee
Q 001747 161 VFCD 164 (1018)
Q Consensus 161 vf~d 164 (1018)
+.+-
T Consensus 171 v~v~ 174 (370)
T PRK05600 171 LAVF 174 (370)
T ss_pred EEEE
Confidence 8753
No 50
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=99.96 E-value=1e-29 Score=275.78 Aligned_cols=164 Identities=25% Similarity=0.421 Sum_probs=147.0
Q ss_pred cCchhhhhhhcCHHHHHHHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccch
Q 001747 410 NSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQA 489 (1018)
Q Consensus 410 ~~rydrq~~~~G~~~q~~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~ 489 (1018)
..||+||.++||.++|++|++++|+|+|+||+||+++++|+++|| |+|+|+|+|.|+.||||||+++..+|||++
T Consensus 10 ~~rf~R~~~L~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GV-----g~itLiD~D~V~~sNlnRQ~~~~~~~vG~~ 84 (268)
T PRK15116 10 RQRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGI-----GAITLIDMDDVCVTNTNRQIHALRDNVGLA 84 (268)
T ss_pred HHHHhhHHHHhCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHcCC-----CEEEEEeCCEecccccccccccChhhcChH
Confidence 369999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCeEEEEecccCCccccccccccc-cCccEEEEcccChhHHHHHHhhccccccceEecccCCcccc
Q 001747 490 KSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFW-ENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCN 568 (1018)
Q Consensus 490 Ka~va~~~l~~~np~~~i~~~~~~~~~~~~~~~~~~~~-~~~dvVi~alDn~~ar~~v~~~c~~~~~pli~~g~~g~~g~ 568 (1018)
|++++++++.++||+++|+.+...+.+++. ++++ .++|+||+|+|++.++..+++.|+.+++|+|.+|..|.+..
T Consensus 85 Kve~~~~rl~~INP~~~V~~i~~~i~~e~~----~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gGag~k~d 160 (268)
T PRK15116 85 KAEVMAERIRQINPECRVTVVDDFITPDNV----AEYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQID 160 (268)
T ss_pred HHHHHHHHHHhHCCCcEEEEEecccChhhH----HHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECCcccCCC
Confidence 999999999999999999999887765432 2333 57999999999999999999999999999999988877766
Q ss_pred -eEEEeCcccccccC
Q 001747 569 -TQMVIPHLTENYGA 582 (1018)
Q Consensus 569 -~~v~ip~~t~~y~~ 582 (1018)
.++-+-+++..+.|
T Consensus 161 p~~~~~~di~~t~~~ 175 (268)
T PRK15116 161 PTQIQVVDLAKTIQD 175 (268)
T ss_pred CCeEEEEeeecccCC
Confidence 45556666655543
No 51
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.96 E-value=3.9e-28 Score=279.74 Aligned_cols=155 Identities=25% Similarity=0.364 Sum_probs=146.2
Q ss_pred CCchhhhhhhhhhhc--cCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccC
Q 001747 8 QTDIDEDLHSRQLAV--YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIG 85 (1018)
Q Consensus 8 ~~~~~~~~YdRQi~l--~G~~~q~~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diG 85 (1018)
.+..+.+||+|||++ ||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+|||+++++|||
T Consensus 108 ~s~~~~~~y~r~i~l~~~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG 187 (376)
T PRK08762 108 LTDEQDERYSRHLRLPEVGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVG 187 (376)
T ss_pred CCHHHHHHHHHhcchhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCC
Confidence 445566899999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhhCCCcEEEEEecCCCh----hhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEEeeecceeEEE
Q 001747 86 KNRALASVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSV 161 (1018)
Q Consensus 86 k~ka~a~~~~L~elNp~V~v~~~~~~l~~----~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~~~~~G~~G~v 161 (1018)
++||++++++|+++||+++|..+...+++ ++++++|+||.|.++.+.+..+|++|++++ +|||++++.|+.|++
T Consensus 188 ~~Ka~~~~~~l~~~np~v~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~~~~~--ip~i~~~~~g~~g~v 265 (376)
T PRK08762 188 QPKVDSAAQRLAALNPDVQVEAVQERVTSDNVEALLQDVDVVVDGADNFPTRYLLNDACVKLG--KPLVYGAVFRFEGQV 265 (376)
T ss_pred CcHHHHHHHHHHHHCCCCEEEEEeccCChHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEEeccCEEEE
Confidence 99999999999999999999999887764 467899999999999999999999999999 999999999999998
Q ss_pred Eee
Q 001747 162 FCD 164 (1018)
Q Consensus 162 f~d 164 (1018)
.+-
T Consensus 266 ~~~ 268 (376)
T PRK08762 266 SVF 268 (376)
T ss_pred EEE
Confidence 853
No 52
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.96 E-value=8.2e-29 Score=264.61 Aligned_cols=155 Identities=29% Similarity=0.439 Sum_probs=140.3
Q ss_pred cCHHHHHHHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHH
Q 001747 420 FGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAT 499 (1018)
Q Consensus 420 ~G~~~q~~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~ 499 (1018)
||.++|++|++++|+|+||||+||+++++|+++|| |+|+|+|+|.|+.||||||++++++|||++|+++++++++
T Consensus 1 ~G~e~~~~L~~~~VlVvG~GGvGs~va~~Lar~GV-----g~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~ 75 (231)
T cd00755 1 YGEEGLEKLRNAHVAVVGLGGVGSWAAEALARSGV-----GKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIR 75 (231)
T ss_pred CCHHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCC-----CEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHH
Confidence 69999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred hhCCCCeEEEEecccCCccccccccccccCccEEEEcccChhHHHHHHhhccccccceEecccCCcccc-eEEEeCcccc
Q 001747 500 SINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCN-TQMVIPHLTE 578 (1018)
Q Consensus 500 ~~np~~~i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~~~pli~~g~~g~~g~-~~v~ip~~t~ 578 (1018)
++||+++|+++...+.+++.. +.+..++|+||+|+|+..+|..++++|+.+++|+|.++..|.+.. +++.+.++..
T Consensus 76 ~inP~~~V~~~~~~i~~~~~~---~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~g~g~~~dp~~i~i~di~~ 152 (231)
T cd00755 76 DINPECEVDAVEEFLTPDNSE---DLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVISSMGAGGKLDPTRIRVADISK 152 (231)
T ss_pred HHCCCcEEEEeeeecCHhHHH---HHhcCCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCCCeEEEccEec
Confidence 999999999999988864431 223357999999999999999999999999999999998888766 6777777666
Q ss_pred cccC
Q 001747 579 NYGA 582 (1018)
Q Consensus 579 ~y~~ 582 (1018)
++.|
T Consensus 153 t~~~ 156 (231)
T cd00755 153 TSGD 156 (231)
T ss_pred cccC
Confidence 6654
No 53
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=99.95 E-value=1.2e-28 Score=261.19 Aligned_cols=163 Identities=28% Similarity=0.371 Sum_probs=142.5
Q ss_pred ccCchhhhhhhcCHHHHHHHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccc
Q 001747 409 INSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 488 (1018)
Q Consensus 409 ~~~rydrq~~~~G~~~q~~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~ 488 (1018)
.+.-++++...||.++|++|++++|+||||||+||+++++|+++|+ |+|+++|.|.|+.+||+||+++ ++|||+
T Consensus 7 ~~~~~~~~~~~~g~~~q~~L~~~~V~ViG~GglGs~ia~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~~~-~~dvG~ 80 (212)
T PRK08644 7 MEEFEAMLASRHTPKLLEKLKKAKVGIAGAGGLGSNIAVALARSGV-----GNLKLVDFDVVEPSNLNRQQYF-ISQIGM 80 (212)
T ss_pred HHHHHHHHHhhcCHHHHHHHhCCCEEEECcCHHHHHHHHHHHHcCC-----CeEEEEeCCEeccccccccEee-hhhCCC
Confidence 3455777778899999999999999999999999999999999999 9999999999999999999976 679999
Q ss_pred hHHHHHHHHHHhhCCCCeEEEEecccCCccccccccccccCccEEEEcccChhHHHHHHhhcccc-ccceEecccCCccc
Q 001747 489 AKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYF-QKPLLESGTLGAKC 567 (1018)
Q Consensus 489 ~Ka~va~~~l~~~np~~~i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~-~~pli~~g~~g~~g 567 (1018)
+|+++++++++++||+++|+++...+.+++. +++++++|+||+|+||.++|.++++.|+++ ++|+|.++..|..|
T Consensus 81 ~Ka~~a~~~l~~lnp~v~v~~~~~~i~~~~~----~~~~~~~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~~~~~~~~~ 156 (212)
T PRK08644 81 PKVEALKENLLEINPFVEIEAHNEKIDEDNI----EELFKDCDIVVEAFDNAETKAMLVETVLEHPGKKLVAASGMAGYG 156 (212)
T ss_pred hHHHHHHHHHHHHCCCCEEEEEeeecCHHHH----HHHHcCCCEEEECCCCHHHHHHHHHHHHHhCCCCEEEeehhhccC
Confidence 9999999999999999999999988875332 467899999999999999999999999999 99999876666666
Q ss_pred ceEEEeCcc--ccccc
Q 001747 568 NTQMVIPHL--TENYG 581 (1018)
Q Consensus 568 ~~~v~ip~~--t~~y~ 581 (1018)
++..+.|.. ..||.
T Consensus 157 ~~~~~~~~~~~~~~~~ 172 (212)
T PRK08644 157 DSNSIKTRRIGKNFYI 172 (212)
T ss_pred CceEEEecCCCCCeeE
Confidence 665554432 34453
No 54
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=99.95 E-value=3.2e-28 Score=274.99 Aligned_cols=151 Identities=23% Similarity=0.370 Sum_probs=142.8
Q ss_pred hhhhhhhhhc--cCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccC--chH
Q 001747 13 EDLHSRQLAV--YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIG--KNR 88 (1018)
Q Consensus 13 ~~~YdRQi~l--~G~~~q~~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diG--k~k 88 (1018)
++||+||+++ ||.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|.|.|+.+||+||++++++|+| ++|
T Consensus 2 ~~rY~Rq~~l~~~G~~~Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~K 81 (339)
T PRK07688 2 NERYSRQELFSPIGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPK 81 (339)
T ss_pred cchhhhhhchhhcCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcH
Confidence 3699999988 999999999999999999999999999999999999999999999999999999999999995 599
Q ss_pred HHHHHHHHHhhCCCcEEEEEecCCCh----hhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEEeeecceeEEEEee
Q 001747 89 ALASVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCD 164 (1018)
Q Consensus 89 a~a~~~~L~elNp~V~v~~~~~~l~~----~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~~~~~G~~G~vf~d 164 (1018)
|++++++|+++||.++|+++...+++ ++++++|+||+|.++++.+..+|++|++++ +|||++++.|++|++++-
T Consensus 82 a~aa~~~l~~inp~v~v~~~~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~~~~~--iP~i~~~~~g~~G~~~~~ 159 (339)
T PRK07688 82 AVAAKKRLEEINSDVRVEAIVQDVTAEELEELVTGVDLIIDATDNFETRFIVNDAAQKYG--IPWIYGACVGSYGLSYTI 159 (339)
T ss_pred HHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHhC--CCEEEEeeeeeeeEEEEE
Confidence 99999999999999999999888765 468899999999999999999999999999 999999999999987754
Q ss_pred c
Q 001747 165 F 165 (1018)
Q Consensus 165 ~ 165 (1018)
.
T Consensus 160 ~ 160 (339)
T PRK07688 160 I 160 (339)
T ss_pred C
Confidence 4
No 55
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=99.95 E-value=3.2e-28 Score=274.93 Aligned_cols=151 Identities=23% Similarity=0.417 Sum_probs=142.8
Q ss_pred hhhhhhhhhc--cCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccC--chH
Q 001747 13 EDLHSRQLAV--YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIG--KNR 88 (1018)
Q Consensus 13 ~~~YdRQi~l--~G~~~q~~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diG--k~k 88 (1018)
++|||||+++ ||.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|.|.|+.+||+||++++++|+| ++|
T Consensus 2 ~~rY~Rq~~~~~~G~~~Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~K 81 (338)
T PRK12475 2 QERYSRQILFSGIGEEGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPK 81 (338)
T ss_pred cchhhhhhchhhcCHHHHHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccH
Confidence 3599999998 899999999999999999999999999999999999999999999999999999999999985 899
Q ss_pred HHHHHHHHHhhCCCcEEEEEecCCCh----hhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEEeeecceeEEEEee
Q 001747 89 ALASVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCD 164 (1018)
Q Consensus 89 a~a~~~~L~elNp~V~v~~~~~~l~~----~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~~~~~G~~G~vf~d 164 (1018)
|++++++|+++||+++|+++...+++ +.++++|+||+|.++++.+..+|++|++++ +|+|++++.|++|++++.
T Consensus 82 a~aa~~~l~~inp~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~~~~~--ip~i~~~~~g~~G~~~~~ 159 (338)
T PRK12475 82 AIAAKEHLRKINSEVEIVPVVTDVTVEELEELVKEVDLIIDATDNFDTRLLINDLSQKYN--IPWIYGGCVGSYGVTYTI 159 (338)
T ss_pred HHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcC--CCEEEEEecccEEEEEEE
Confidence 99999999999999999999887763 467899999999999999999999999999 999999999999998765
Q ss_pred c
Q 001747 165 F 165 (1018)
Q Consensus 165 ~ 165 (1018)
.
T Consensus 160 ~ 160 (338)
T PRK12475 160 I 160 (338)
T ss_pred C
Confidence 4
No 56
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=99.95 E-value=3.1e-27 Score=252.71 Aligned_cols=227 Identities=17% Similarity=0.209 Sum_probs=183.7
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEecCCC-
Q 001747 35 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLT- 113 (1018)
Q Consensus 35 ~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~~~l~- 113 (1018)
||+|+|+||+|+|++|||+++|||+|+|+|.|.|+.+||+||||++++|+|++||++++++|+++||+++|+.+...+.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~~ 80 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGP 80 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCCh
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999987762
Q ss_pred -----hhhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEEeeecceeEEEEeecCCce-EEecCCCCCCcceeeeee
Q 001747 114 -----KEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFGPEF-TVVDVDGEDPHTGIIASI 187 (1018)
Q Consensus 114 -----~~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~~~~~G~~G~vf~d~g~~~-~v~d~~ge~p~~~~i~~i 187 (1018)
++++++||+||+|.++.+.+..+|++|++++ +|||.+++.|+.|++++-.+... ++.+.. .++.
T Consensus 81 ~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~~~--iplI~~g~~G~~G~v~vi~p~~t~c~~C~~-~~~~------- 150 (234)
T cd01484 81 EQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLI--VPLIESGTEGFKGNAQVILPGMTECIECTL-YPPQ------- 150 (234)
T ss_pred hhhchHHHHhCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEcccCCceEEEEEcCCCCCCcccCC-CCCC-------
Confidence 4689999999999999999999999999999 99999999999999987764211 111100 0000
Q ss_pred ccCCCceeecccccccccccCCeeEEEEeecccccCCCCCccccccCCceeeeccccccccceeecceEEEeeCCeeecC
Q 001747 188 SNDNPALVSCVDDERLEFQDGDLVVFSEVHGMTELNDGKPRKIKSARPYSFTLEEDTTNYGTYVKGGIVTQVKQPKVLNF 267 (1018)
Q Consensus 188 ~~~~~~~v~~~~~~~~~l~dgd~v~f~ev~gm~~ln~~~~~~i~~~~~~~~~i~~dt~~f~~y~~gg~~~qvk~~~~~~f 267 (1018)
+...-
T Consensus 151 ---------------------------------------------------------------------------~~~p~ 155 (234)
T cd01484 151 ---------------------------------------------------------------------------KNFPM 155 (234)
T ss_pred ---------------------------------------------------------------------------CCCCc
Confidence 00000
Q ss_pred CchHHhhcCCCCcccccCccCCCCChHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHH
Q 001747 268 KPLREALEDPGDFLLSDFSKFDRPPPLHLAFQALDKFVSELGRFPVAGSEEDAQKLISVATNINESLGDGRVEDINTKLL 347 (1018)
Q Consensus 268 ~sL~~~l~~p~~~~~~d~~k~~~~~~l~~~~~al~~F~~~~gr~P~~~~~~D~~~l~~~~~~i~~~~~~~~~~~i~~~~i 347 (1018)
++++ +.| ..+.|-...|.+.|+ .+..+.+.+.+.++...+.++. ..++...+
T Consensus 156 Cti~---~~P-------------~~~~hci~~a~~~~~---------d~~~~~~~i~~~a~~ra~~~~i---~~~~~~~~ 207 (234)
T cd01484 156 CTIA---SMP-------------RLPEHCIEWARMLQW---------DDPEHIQFIFQASNERASQYNI---RGVTYFLT 207 (234)
T ss_pred cccC---CCC-------------CCchHHHHHHHHHHh---------CCHHHHHHHHHHHHHHHHHcCC---CCcCHHHH
Confidence 1111 111 123567777777776 3567888899999988888764 46778889
Q ss_pred HHHHhhcccccCchhhhhhhhhhhhHh
Q 001747 348 RHFAFGARAVLNPMAAMFGGIVGQEVV 374 (1018)
Q Consensus 348 ~~~~~~~~~el~pvaA~iGGiaAQEVI 374 (1018)
+.++...=+.++.+.|+++|++.-|++
T Consensus 208 ~~i~~~iipai~tTnaiia~~~~~e~~ 234 (234)
T cd01484 208 KGVAGRIIPAVATTNAVVAGVCALEVF 234 (234)
T ss_pred HHHhcCeecchhhHHHHHHHHHHHhhC
Confidence 999988888899999999999998863
No 57
>PRK07877 hypothetical protein; Provisional
Probab=99.95 E-value=3.9e-28 Score=294.34 Aligned_cols=160 Identities=21% Similarity=0.317 Sum_probs=146.3
Q ss_pred cCchhhhhhhcCHHHHHHHhcCcEEEEccCcchHHHHHHHHhcC-cccCCCccEEEecCCcccccccCcccCcccccccc
Q 001747 410 NSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMG-VSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 488 (1018)
Q Consensus 410 ~~rydrq~~~~G~~~q~~l~~~~v~vvG~GgiG~e~lk~La~~G-v~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~ 488 (1018)
..||+||+.+||.++|++|++++|+||||| +||.++.+|+++| + |+|+|+|+|.||.|||||| +|+.+|||+
T Consensus 87 ~~r~~Rn~~~ig~~~Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvv-----G~l~lvD~D~ve~sNLnRq-~~~~~diG~ 159 (722)
T PRK07877 87 AVRLDRNRNKITAEEQERLGRLRIGVVGLS-VGHAIAHTLAAEGLC-----GELRLADFDTLELSNLNRV-PAGVFDLGV 159 (722)
T ss_pred HHHhhchhhhCCHHHHHHHhcCCEEEEEec-HHHHHHHHHHHccCC-----CeEEEEcCCEEcccccccc-cCChhhccc
Confidence 479999999999999999999999999997 9999999999999 6 9999999999999999999 589999999
Q ss_pred hHHHHHHHHHHhhCCCCeEEEEecccCCccccccccccccCccEEEEcccChhHHHHHHhhccccccceEecccCCcccc
Q 001747 489 AKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCN 568 (1018)
Q Consensus 489 ~Ka~va~~~l~~~np~~~i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~~~pli~~g~~g~~g~ 568 (1018)
+|+++++++++++||+++|+++...+++++. ++|++++|+||+|+||+++|..+++.|+.+++|+|.++..+ |.
T Consensus 160 ~Kv~~a~~~l~~inp~i~v~~~~~~i~~~n~----~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~~~~~--g~ 233 (722)
T PRK07877 160 NKAVVAARRIAELDPYLPVEVFTDGLTEDNV----DAFLDGLDVVVEECDSLDVKVLLREAARARRIPVLMATSDR--GL 233 (722)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeccCCHHHH----HHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCC--CC
Confidence 9999999999999999999999999987543 57789999999999999999999999999999999877555 55
Q ss_pred eE--E--EeCcccccccCC
Q 001747 569 TQ--M--VIPHLTENYGAS 583 (1018)
Q Consensus 569 ~~--v--~ip~~t~~y~~~ 583 (1018)
+. . +.| .++||.|.
T Consensus 234 ~~~e~~~~~p-~~pc~~cl 251 (722)
T PRK07877 234 LDVERFDLEP-DRPILHGL 251 (722)
T ss_pred cCcceeeeCC-CCceeecc
Confidence 42 2 356 58999994
No 58
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=99.95 E-value=1.2e-27 Score=299.99 Aligned_cols=154 Identities=21% Similarity=0.329 Sum_probs=147.0
Q ss_pred hhhhhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcC-----CEEEEEeCCccCcccCCcccccCcCccCc
Q 001747 12 DEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGV-----KSVTLHDEGTVELWDLSSNFVFSDNDIGK 86 (1018)
Q Consensus 12 ~~~~YdRQi~l~G~~~q~~L~~s~VlIiG~gglG~eiaKnLvlaGV-----g~itlvD~d~v~~~dL~~qf~~~~~diGk 86 (1018)
..+|||||+++||.++|++|++++|+|+|+||+|||++|||+++|| |+|+|+|.|.|+.+||+||||++++|||+
T Consensus 398 ~~~RYdrqi~l~G~~~Q~kL~~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dIGk 477 (1008)
T TIGR01408 398 RGDRYDAQIAVFGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHIGK 477 (1008)
T ss_pred hhhhhHHHHHHcCHHHHHHHhhCcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCCEecccccCcCcCCChhHcCc
Confidence 4689999999999999999999999999999999999999999999 89999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhCCCcEEEEEecCCC--------hhhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEEeeeccee
Q 001747 87 NRALASVQKLQELNNAVVLSTLTSKLT--------KEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLF 158 (1018)
Q Consensus 87 ~ka~a~~~~L~elNp~V~v~~~~~~l~--------~~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~~~~~G~~ 158 (1018)
+||++++++++++||.++|+++...+. ++++.++|+||.|.++.+.+..+|+.|+.++ +|||.+++.|+.
T Consensus 478 ~Ka~vaa~~l~~~Np~v~I~~~~~~v~~~~e~i~~~~f~~~~dvVi~alDn~~aR~~vn~~c~~~~--iPli~~gt~G~~ 555 (1008)
T TIGR01408 478 PKSYTAADATLKINPQIKIDAHQNRVGPETETIFNDEFYEKLDVVINALDNVEARRYVDSRCLAFL--KPLLESGTLGTK 555 (1008)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEeecChhhhhhhhHHHhhCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEeccCce
Confidence 999999999999999999999987653 3578999999999999999999999999999 999999999999
Q ss_pred EEEEeecCC
Q 001747 159 GSVFCDFGP 167 (1018)
Q Consensus 159 G~vf~d~g~ 167 (1018)
|++.+-.+.
T Consensus 556 G~v~v~ip~ 564 (1008)
T TIGR01408 556 GNTQVVVPH 564 (1008)
T ss_pred eeEEEEeCC
Confidence 999988764
No 59
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=99.95 E-value=4.2e-28 Score=239.81 Aligned_cols=134 Identities=34% Similarity=0.649 Sum_probs=122.1
Q ss_pred hcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCCeEE
Q 001747 429 EDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIE 508 (1018)
Q Consensus 429 ~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~~i~ 508 (1018)
+++||+|+|+||+||+++++|+++|+ |+|+|+|.|.|+.+||+||+||+.+|||++|+++++++++++||+++++
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~Gv-----~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~ 75 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARSGV-----GKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVE 75 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHHTT-----SEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEE
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCC-----CceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeee
Confidence 47899999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred EEecccCCccccccccccccCccEEEEcccChhHHHHHHhhccccccceEecccCCcccceEE
Q 001747 509 ALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQM 571 (1018)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~~~pli~~g~~g~~g~~~v 571 (1018)
++...+.++.. .++++++|+||+|+|+.++|.+++++|+.+++|+|++|+.|+.|+++.
T Consensus 76 ~~~~~~~~~~~----~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~~~g~~G~~~~ 134 (135)
T PF00899_consen 76 AIPEKIDEENI----EELLKDYDIVIDCVDSLAARLLLNEICREYGIPFIDAGVNGFYGQVVM 134 (135)
T ss_dssp EEESHCSHHHH----HHHHHTSSEEEEESSSHHHHHHHHHHHHHTT-EEEEEEEETTEEEEEE
T ss_pred eeecccccccc----cccccCCCEEEEecCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEEEE
Confidence 99999853221 466789999999999999999999999999999999999999999865
No 60
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=99.95 E-value=2e-27 Score=259.95 Aligned_cols=170 Identities=29% Similarity=0.390 Sum_probs=154.2
Q ss_pred CCchhhhhhhhhhhccCHH--HHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccC
Q 001747 8 QTDIDEDLHSRQLAVYGRE--TMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIG 85 (1018)
Q Consensus 8 ~~~~~~~~YdRQi~l~G~~--~q~~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diG 85 (1018)
.++.+..||+||+++|+.. +|++|+.+||+|+|+||+|++++++|+++|||+++|+|+|.|+.+||.||++++++|+|
T Consensus 3 ~~~~~~~ry~Rqi~l~~~~~~~q~~l~~s~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d~v~~snL~rq~~~~~~dig 82 (254)
T COG0476 3 LSDEEIERYSRQILLPGIGGEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSNLQRQFLFTEADVG 82 (254)
T ss_pred ccHHHHHhhcceeeecccCHHHHHHHhhCCEEEEecChhHHHHHHHHHHcCCCeEEEEcCCcccccccCceeeecccccC
Confidence 4677899999999996554 59999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhhCCCcEEEEEecCCCh----hhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEEeeecceeEEE
Q 001747 86 KNRALASVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSV 161 (1018)
Q Consensus 86 k~ka~a~~~~L~elNp~V~v~~~~~~l~~----~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~~~~~G~~G~v 161 (1018)
++||+++++.|+++||.+.+.++...++. +++.++|+|++|.++++++..+|++|++++ +|++++++.|++|++
T Consensus 83 ~~Ka~~a~~~l~~ln~~v~v~~~~~~l~~~~~~~~~~~~d~v~d~~dn~~~r~~iN~~~~~~~--~pli~~~~~~~~g~~ 160 (254)
T COG0476 83 KPKAEVAAKALRKLNPLVEVVAYLERLDEENAEELIAQFDVVLDCTDNFETRYLINDACVKLG--IPLVHGGAIGFEGQV 160 (254)
T ss_pred CcHHHHHHHHHHHhCCCCeEEEeecccChhhHHHHhccCCEEEECCCCHHHHHHHHHHHHHhC--CCeEeeeeccceEEE
Confidence 99999999999999999999999887754 468899999999999999999999999999 999999999999999
Q ss_pred EeecCCc--eEEecCCCCCC
Q 001747 162 FCDFGPE--FTVVDVDGEDP 179 (1018)
Q Consensus 162 f~d~g~~--~~v~d~~ge~p 179 (1018)
++..+.. -++.+..++.|
T Consensus 161 ~~~~~~~~~~c~~~~~~~~~ 180 (254)
T COG0476 161 TVIIPGDKTPCYRCLFPEKP 180 (254)
T ss_pred EEEecCCCCCcccccCCCCC
Confidence 9988652 23333444444
No 61
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=99.95 E-value=8.2e-28 Score=250.73 Aligned_cols=122 Identities=30% Similarity=0.472 Sum_probs=113.7
Q ss_pred CchhhhhhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchH
Q 001747 9 TDIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNR 88 (1018)
Q Consensus 9 ~~~~~~~YdRQi~l~G~~~q~~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~k 88 (1018)
++.+.+||||||++||.++|+||++++|||+|+||+|+|++|||+++|||+|+|+|+|.|+.+||+||||+++ ++|++|
T Consensus 2 s~~E~~RYsRQIrLwG~EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~Ve~SNL~RQfl~~~-dvGk~K 80 (287)
T PTZ00245 2 RDAEAVRYDRQIRLWGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGLVTDADVCTNYLMQG-EAGGTR 80 (287)
T ss_pred CHHHHHHHhHHHHHhCHHHHHHHhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCccchhhhcccccccc-ccCCcH
Confidence 4567899999999999999999999999999999999999999999999999999999999999999999998 689999
Q ss_pred HHHHHHHHHhhCCCcEEEEEecCCChhhccCCceEEEcccCHHHH
Q 001747 89 ALASVQKLQELNNAVVLSTLTSKLTKEQLSDFQAVVFTDISLDKA 133 (1018)
Q Consensus 89 a~a~~~~L~elNp~V~v~~~~~~l~~~~~~~~dvVI~~~~~~~~~ 133 (1018)
|++++++|+++||+|+|+.+...++++ ..|++||+++.+.+..
T Consensus 81 AeaAa~~L~eLNP~V~V~~i~~rld~~--n~fqvvV~~~~~le~a 123 (287)
T PTZ00245 81 GARALGALQRLNPHVSVYDAVTKLDGS--SGTRVTMAAVITEEDA 123 (287)
T ss_pred HHHHHHHHHHHCCCcEEEEcccccCCc--CCceEEEEEcccHHHH
Confidence 999999999999999999998877763 4899999998876644
No 62
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=99.95 E-value=1.5e-27 Score=279.72 Aligned_cols=146 Identities=23% Similarity=0.295 Sum_probs=129.1
Q ss_pred CHHHHHHHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccc---cchHHHHHHHH
Q 001747 421 GAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNI---GQAKSTVAASA 497 (1018)
Q Consensus 421 G~~~q~~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~di---G~~Ka~va~~~ 497 (1018)
..-..++|+++||+||||||+||+++++|+++|| |+|++||+|+|+.|||+||+||+.+|+ |++||++|+++
T Consensus 329 P~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GV-----g~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~ 403 (664)
T TIGR01381 329 PDLQLERYSQLKVLLLGAGTLGCNVARCLIGWGV-----RHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKA 403 (664)
T ss_pred ChhhHHHHhcCeEEEECCcHHHHHHHHHHHHcCC-----CeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHH
Confidence 3334489999999999999999999999999999 999999999999999999999999999 99999999999
Q ss_pred HHhhCCCCeEEEEeccc-------CCcc-ccccc-----cccccCccEEEEcccChhHHHHHHhhccccccceEecccCC
Q 001747 498 ATSINPRLNIEALQNRV-------GPET-ENVFD-----DTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLG 564 (1018)
Q Consensus 498 l~~~np~~~i~~~~~~~-------~~~~-~~~~~-----~~~~~~~dvVi~alDn~~ar~~v~~~c~~~~~pli~~g~~g 564 (1018)
++++||+++|+++..++ +++. +.+.. .++++++|+|++|+||.++|++++.+|..+++|+|.++ .|
T Consensus 404 Lk~InP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~tDn~esR~L~n~~c~~~~kplI~aA-lG 482 (664)
T TIGR01381 404 LKRIFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLLDSREARWLPTVLCSRHKKIAISAA-LG 482 (664)
T ss_pred HHHHCCCcEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEE-ec
Confidence 99999999999998885 3321 11110 35789999999999999999999999999999999875 89
Q ss_pred cccceEEE
Q 001747 565 AKCNTQMV 572 (1018)
Q Consensus 565 ~~g~~~v~ 572 (1018)
+.|++-+.
T Consensus 483 fdg~lvmr 490 (664)
T TIGR01381 483 FDSYVVMR 490 (664)
T ss_pred cceEEEEE
Confidence 98886554
No 63
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=99.95 E-value=3.5e-27 Score=256.08 Aligned_cols=144 Identities=17% Similarity=0.301 Sum_probs=133.7
Q ss_pred CCchhhhhhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCch
Q 001747 8 QTDIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKN 87 (1018)
Q Consensus 8 ~~~~~~~~YdRQi~l~G~~~q~~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ 87 (1018)
+++...+||+||.++||.++|++|++++|+|+|+||+|+++|++|+++|||+|||+|.|.|+.+|++||+++..+++|++
T Consensus 5 ~~~~~~~rf~R~~~L~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~ 84 (268)
T PRK15116 5 ISDAWRQRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLA 84 (268)
T ss_pred CCHHHHHHHhhHHHHhCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChH
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCcEEEEEecCCChh----hc-cCCceEEEcccCHHHHHHHHHHHHhcCCCceeEEee
Q 001747 88 RALASVQKLQELNNAVVLSTLTSKLTKE----QL-SDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAE 153 (1018)
Q Consensus 88 ka~a~~~~L~elNp~V~v~~~~~~l~~~----~~-~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~~~ 153 (1018)
||++++++++++||+++|+.+.+.++++ ++ .+||+||+|.++...+..|+++|++++ +|||.++
T Consensus 85 Kve~~~~rl~~INP~~~V~~i~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~--ip~I~~g 153 (268)
T PRK15116 85 KAEVMAERIRQINPECRVTVVDDFITPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNK--IPLVTTG 153 (268)
T ss_pred HHHHHHHHHHhHCCCcEEEEEecccChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcC--CCEEEEC
Confidence 9999999999999999999998766543 34 479999999999999999999999999 9999763
No 64
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=99.94 E-value=1.8e-27 Score=246.03 Aligned_cols=164 Identities=24% Similarity=0.380 Sum_probs=147.7
Q ss_pred ccCchhhhhhhcCHHHHHHHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccc
Q 001747 409 INSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 488 (1018)
Q Consensus 409 ~~~rydrq~~~~G~~~q~~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~ 488 (1018)
...||.|..+++|.++.++|++++|+|||+||+|+.++..|+|+|+ |+|+|||+|.|.++|+|||.-....+||+
T Consensus 9 ~~~rf~~~~~l~G~~~lekl~~~~V~VvGiGGVGSw~veALaRsGi-----g~itlID~D~v~vTN~NRQi~A~~~~iGk 83 (263)
T COG1179 9 YRQRFGGIARLYGEDGLEKLKQAHVCVVGIGGVGSWAVEALARSGI-----GRITLIDMDDVCVTNTNRQIHALLGDIGK 83 (263)
T ss_pred HHHHhhhHHHHcChhHHHHHhhCcEEEEecCchhHHHHHHHHHcCC-----CeEEEEecccccccccchhhHhhhhhccc
Confidence 3578999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhCCCCeEEEEecccCCccccccccccccCccEEEEcccChhHHHHHHhhccccccceEecccCCcccc
Q 001747 489 AKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCN 568 (1018)
Q Consensus 489 ~Ka~va~~~l~~~np~~~i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~~~pli~~g~~g~~g~ 568 (1018)
+|+++++++++.+||.++|.++...+++++-+. -+..++|+||||+|++.++..+-.+|+.+++|+|.+|..|.+-.
T Consensus 84 ~Kv~vm~eri~~InP~c~V~~~~~f~t~en~~~---~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss~Gag~k~D 160 (263)
T COG1179 84 PKVEVMKERIKQINPECEVTAINDFITEENLED---LLSKGFDYVIDAIDSVRAKVALIAYCRRNKIPVISSMGAGGKLD 160 (263)
T ss_pred HHHHHHHHHHHhhCCCceEeehHhhhCHhHHHH---HhcCCCCEEEEchhhhHHHHHHHHHHHHcCCCEEeeccccCCCC
Confidence 999999999999999999999999999876432 24468999999999999999999999999999998887776655
Q ss_pred -eEEEeCcccccc
Q 001747 569 -TQMVIPHLTENY 580 (1018)
Q Consensus 569 -~~v~ip~~t~~y 580 (1018)
+++-+-+++..+
T Consensus 161 PTri~v~DiskT~ 173 (263)
T COG1179 161 PTRIQVADISKTI 173 (263)
T ss_pred CceEEeeechhhc
Confidence 566565544333
No 65
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=99.94 E-value=1.1e-26 Score=231.94 Aligned_cols=133 Identities=37% Similarity=0.624 Sum_probs=125.7
Q ss_pred cEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCCeEEEEe
Q 001747 432 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQ 511 (1018)
Q Consensus 432 ~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~~i~~~~ 511 (1018)
||+||||||+||+++++|+++|+ |+|+|+|+|.++.+||+||++++++|+|++|+++++++++++||+++++.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv-----~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~ 75 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGV-----GKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVP 75 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-----CEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEe
Confidence 69999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccccccccccccCccEEEEcccChhHHHHHHhhccccccceEecccCCcccceEEEe
Q 001747 512 NRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVI 573 (1018)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~~~pli~~g~~g~~g~~~v~i 573 (1018)
..+.+.+. .++++++|+||+|.|+.++|.++++.|+++++|+|++|+.|+.|+++++.
T Consensus 76 ~~~~~~~~----~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~~~~g~~g~~~~~~ 133 (143)
T cd01483 76 EGISEDNL----DDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDAGGLGLGGDIQVID 133 (143)
T ss_pred eecChhhH----HHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCCcEEEEEEEE
Confidence 88765322 46789999999999999999999999999999999999999999998876
No 66
>PRK14852 hypothetical protein; Provisional
Probab=99.94 E-value=1.7e-26 Score=282.10 Aligned_cols=153 Identities=18% Similarity=0.179 Sum_probs=143.1
Q ss_pred hhhhhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHH
Q 001747 12 DEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALA 91 (1018)
Q Consensus 12 ~~~~YdRQi~l~G~~~q~~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a 91 (1018)
-..+|+||+++||.++|+||++++|+|+|+||+|++++++|+++|||+|+|+|.|.|+.+||+|||+++.+|||++||++
T Consensus 311 ~~~ry~Rqi~lig~e~Q~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaev 390 (989)
T PRK14852 311 TDIAFSRNLGLVDYAGQRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDV 390 (989)
T ss_pred HHHHhhchHhhcCHHHHHHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCcEEEEEecCCCh----hhccCCceEEEcccC--HHHHHHHHHHHHhcCCCceeEEeeecceeEEEEeec
Q 001747 92 SVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDIS--LDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDF 165 (1018)
Q Consensus 92 ~~~~L~elNp~V~v~~~~~~l~~----~~~~~~dvVI~~~~~--~~~~~~ln~~c~~~~~~i~fi~~~~~G~~G~vf~d~ 165 (1018)
++++|+++||+|+|+++.+.+++ ++++++|+||+|.++ .+.+..+++.|++++ ||+|.+++.|+.|++++..
T Consensus 391 aa~~l~~INP~v~I~~~~~~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~--IP~I~ag~~G~~g~v~v~~ 468 (989)
T PRK14852 391 MTERALSVNPFLDIRSFPEGVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRALELG--IPVITAGPLGYSCALLVFM 468 (989)
T ss_pred HHHHHHHHCCCCeEEEEecCCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHHHHcC--CCEEEeeccccCeeEEEEc
Confidence 99999999999999999888764 478899999999885 456778888999999 9999999999999998765
Q ss_pred C
Q 001747 166 G 166 (1018)
Q Consensus 166 g 166 (1018)
+
T Consensus 469 p 469 (989)
T PRK14852 469 P 469 (989)
T ss_pred C
Confidence 3
No 67
>PRK14851 hypothetical protein; Provisional
Probab=99.94 E-value=2e-26 Score=279.22 Aligned_cols=158 Identities=13% Similarity=0.192 Sum_probs=147.7
Q ss_pred CCCchhhhhhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCc
Q 001747 7 NQTDIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGK 86 (1018)
Q Consensus 7 ~~~~~~~~~YdRQi~l~G~~~q~~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk 86 (1018)
+..+...++|+||+++||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+|||+++.+|||+
T Consensus 17 ~~~~~~~~ry~R~~~l~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~ 96 (679)
T PRK14851 17 SAAEYREAAFSRNIGLFTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGR 96 (679)
T ss_pred CHHHHHHHHhhhhHHhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCC
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhCCCcEEEEEecCCCh----hhccCCceEEEcccC--HHHHHHHHHHHHhcCCCceeEEeeecceeEE
Q 001747 87 NRALASVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDIS--LDKAIEFDDFCHNHQPAISFIKAEVRGLFGS 160 (1018)
Q Consensus 87 ~ka~a~~~~L~elNp~V~v~~~~~~l~~----~~~~~~dvVI~~~~~--~~~~~~ln~~c~~~~~~i~fi~~~~~G~~G~ 160 (1018)
+|+++++++|+++||+++|+++...+++ ++++++|+||+|.++ .+.+..+++.|++++ ||+|.+++.|+.|+
T Consensus 97 ~Kv~v~~~~l~~inP~~~I~~~~~~i~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~--iP~i~~g~~G~~g~ 174 (679)
T PRK14851 97 PKLAVMKEQALSINPFLEITPFPAGINADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKG--IPVITAGPLGYSSA 174 (679)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEecCCChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCC--CCEEEeecccccce
Confidence 9999999999999999999999988865 468899999999985 567889999999999 99999999999999
Q ss_pred EEeecC
Q 001747 161 VFCDFG 166 (1018)
Q Consensus 161 vf~d~g 166 (1018)
+++-.+
T Consensus 175 ~~~~~p 180 (679)
T PRK14851 175 MLVFTP 180 (679)
T ss_pred EEEEcC
Confidence 986543
No 68
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.5e-25 Score=237.18 Aligned_cols=273 Identities=18% Similarity=0.268 Sum_probs=201.0
Q ss_pred CHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCc
Q 001747 24 GRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAV 103 (1018)
Q Consensus 24 G~~~q~~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V 103 (1018)
+.|..+.|.+++|||||+||+|||++|||+++|.+.++++|.|.++.+||+|||+|++.|+|++||+++++.+....|..
T Consensus 31 ~~e~l~~l~~~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~Rvp~~ 110 (422)
T KOG2015|consen 31 SEENLEFLQDCKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNRRVPGC 110 (422)
T ss_pred CHHHHHHHhhCcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccchhhhcccccccCchhHHHHHHHHHhhCCCc
Confidence 78889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCC---ChhhccCCceEEEcccCHHHHHHHHHHHHhcCC--------CceeEEeeecceeEEEEeecCCceEEe
Q 001747 104 VLSTLTSKL---TKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQP--------AISFIKAEVRGLFGSVFCDFGPEFTVV 172 (1018)
Q Consensus 104 ~v~~~~~~l---~~~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~--------~i~fi~~~~~G~~G~vf~d~g~~~~v~ 172 (1018)
.|..+...+ ..+|+++|++||+..|+.+.|.+||....+... -||+|.+++.|+-|.+.+.++.--.++
T Consensus 111 ~v~~h~~kIqd~~~~FYk~F~~iicGLDsIeaRRwIN~mL~~l~~~g~~d~~~iiPlIDGGtEG~KG~arvI~Pg~TaCi 190 (422)
T KOG2015|consen 111 VVVPHRQKIQDKPISFYKRFDLIICGLDSIEARRWINGMLVRLKLEGNYDISSIIPLIDGGTEGFKGHARVIYPGITACI 190 (422)
T ss_pred EEeeeecchhcCCHHHHhhhceEEecccchhHHHHHHHHHHHHHhccCCCccceeeeeecCcccccceeEEEecCccHHH
Confidence 999887765 458999999999999999999999987654321 169999999999999999886321111
Q ss_pred ----cCCCCCCcceeeeeeccCCCceeecccccccccccCCeeEEEEeecccccCCCCCccccccCCceeeecccccccc
Q 001747 173 ----DVDGEDPHTGIIASISNDNPALVSCVDDERLEFQDGDLVVFSEVHGMTELNDGKPRKIKSARPYSFTLEEDTTNYG 248 (1018)
Q Consensus 173 ----d~~ge~p~~~~i~~i~~~~~~~v~~~~~~~~~l~dgd~v~f~ev~gm~~ln~~~~~~i~~~~~~~~~i~~dt~~f~ 248 (1018)
|.-+++-. ..+..| .+.|+-++....
T Consensus 191 eCtldlyppqvs-~P~CTi------------------------------------AntPRlpEHciE------------- 220 (422)
T KOG2015|consen 191 ECTLDLYPPQVS-YPMCTI------------------------------------ANTPRLPEHCIE------------- 220 (422)
T ss_pred HhHHhhcCcccC-ccccee------------------------------------cCCCCCchHhhh-------------
Confidence 11110000 000000 001111111100
Q ss_pred ceeecceEEEeeCCeeecCCchHHhhcCCCCcccccCccCCCCChHHHHHHHHHHHHHHh-CCCCC-CCCHHHHHHHHHH
Q 001747 249 TYVKGGIVTQVKQPKVLNFKPLREALEDPGDFLLSDFSKFDRPPPLHLAFQALDKFVSEL-GRFPV-AGSEEDAQKLISV 326 (1018)
Q Consensus 249 ~y~~gg~~~qvk~~~~~~f~sL~~~l~~p~~~~~~d~~k~~~~~~l~~~~~al~~F~~~~-gr~P~-~~~~~D~~~l~~~ 326 (1018)
|..+ .++.+.. ...|. ..++++.+++++-
T Consensus 221 ------------------yv~l-------------------------------iqwpe~~~~g~~~~gdd~~hI~wi~er 251 (422)
T KOG2015|consen 221 ------------------YVKL-------------------------------IQWPELNPFGVPLDGDDPEHIEWIVER 251 (422)
T ss_pred ------------------hhhh-------------------------------hcchhhCccCCCCCCCCHHHHHHHHHH
Confidence 1100 0111100 01222 2346788888887
Q ss_pred HHHHHHhcCCCCCCCCCHHHHHHHHhhcccccCchhhhhhhhhhhhHhhhhcCCccccceeeeeecCCCCCC
Q 001747 327 ATNINESLGDGRVEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLYQFFYFDSVESLPT 398 (1018)
Q Consensus 327 ~~~i~~~~~~~~~~~i~~~~i~~~~~~~~~el~pvaA~iGGiaAQEVIK~iT~kf~Pi~n~~~fD~~e~l~~ 398 (1018)
+.+...++. ...++..++.-+.+..-...+.+.|+|+++.|-|++|++|.-+.|++||+.|++.++.-.
T Consensus 252 ~~eRA~ef~---I~gv~~~lvtGvvK~IIPaVasTNA~IAA~Ca~ea~Kl~t~~~~~~~Nym~~n~~eG~yt 320 (422)
T KOG2015|consen 252 SNERANEFN---ITGVTRRLVTGVVKRIIPAVASTNAVIAAVCATEALKLLTATDDPLDNYMNYNAEEGIYT 320 (422)
T ss_pred HHHHhhhcc---cccchHHhhhhhHHhhcchhhhhhHHHHHHHHHHHHHHHHhcchhhhhheeeecccceeE
Confidence 777766653 234566666666655445556666999999999999999999999999999999998643
No 69
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=99.94 E-value=2.4e-25 Score=255.33 Aligned_cols=131 Identities=20% Similarity=0.361 Sum_probs=124.8
Q ss_pred eEEEEcCChHHHHHHHHHHHhcC-----CEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEe
Q 001747 35 NILVSGMQGLGAEIAKNLILAGV-----KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 109 (1018)
Q Consensus 35 ~VlIiG~gglG~eiaKnLvlaGV-----g~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~ 109 (1018)
||+|||+||+|||++|||+++|| |+|+|+|.|.|+.+||+|||+++++|||++||++++++++++||+++|+++.
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~~ 80 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITALQ 80 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence 69999999999999999999999 9999999999999999999999999999999999999999999999999998
Q ss_pred cCCC--------hhhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEEeeecceeEEEEeecCC
Q 001747 110 SKLT--------KEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFGP 167 (1018)
Q Consensus 110 ~~l~--------~~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~~~~~G~~G~vf~d~g~ 167 (1018)
..+. ++++.++|+||.|.++.+.+..+|+.|+.++ +|+|.+++.|+.|++.+-.+.
T Consensus 81 ~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~vn~~C~~~~--iPli~~gt~G~~G~v~v~iP~ 144 (435)
T cd01490 81 NRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCVYYR--KPLLESGTLGTKGNTQVVIPH 144 (435)
T ss_pred cccChhhhhhhhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhC--CCEEEEecccceeEEEEEeCC
Confidence 7664 3678999999999999999999999999999 999999999999999887753
No 70
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=99.93 E-value=2.3e-26 Score=249.75 Aligned_cols=132 Identities=22% Similarity=0.323 Sum_probs=118.7
Q ss_pred cEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCccccc--ccchHHHHHHHHHHhhCCCCeEEE
Q 001747 432 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWN--IGQAKSTVAASAATSINPRLNIEA 509 (1018)
Q Consensus 432 ~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~d--iG~~Ka~va~~~l~~~np~~~i~~ 509 (1018)
||+||||||+||+++++|+++|| |+|+|+|+|+|+.|||+||+||+.+| +|++||++|+++++++||+++|++
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGV-----g~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~ 75 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGV-----RHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATG 75 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-----CeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEE
Confidence 69999999999999999999999 99999999999999999999999999 999999999999999999999999
Q ss_pred EecccC-------C--------ccccccccccccCccEEEEcccChhHHHHHHhhccccccceEecccCCcccceEE
Q 001747 510 LQNRVG-------P--------ETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQM 571 (1018)
Q Consensus 510 ~~~~~~-------~--------~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~~~pli~~g~~g~~g~~~v 571 (1018)
+...+. + +.+++ .++++++|+|++|+||.++|++++.+|..+++|+|+ +..|+.|++.+
T Consensus 76 ~~~~Ipmpgh~~~~~~~~~~~~~~~~l--~~li~~~DvV~d~tDn~esR~L~~~~~~~~~k~~I~-aalGfdg~lvm 149 (307)
T cd01486 76 IVLSIPMPGHPISESEVPSTLKDVKRL--EELIKDHDVIFLLTDSRESRWLPTLLSAAKNKLVIN-AALGFDSYLVM 149 (307)
T ss_pred eeeeccccccccccccccccccCHHHH--HHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCcEEE-EEeccceEEEE
Confidence 987651 0 01111 467899999999999999999999999999999997 57788877544
No 71
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.4e-26 Score=254.17 Aligned_cols=361 Identities=19% Similarity=0.303 Sum_probs=223.5
Q ss_pred HHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEE
Q 001747 26 ETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVL 105 (1018)
Q Consensus 26 ~~q~~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v 105 (1018)
+-++++.++|||+||+||+|||++|||++.|+++|+|+|-|.++.+||+|||||+.+|||++||.++++..+++||.+++
T Consensus 5 ~~~eai~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnpn~~l 84 (603)
T KOG2013|consen 5 EKHEAIKSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNPNIKL 84 (603)
T ss_pred HHHHHhccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhCCCCce
Confidence 34677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCh-----hhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEEeeecceeEEEEeec-CCceEEecCCCCCC
Q 001747 106 STLTSKLTK-----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDF-GPEFTVVDVDGEDP 179 (1018)
Q Consensus 106 ~~~~~~l~~-----~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~~~~~G~~G~vf~d~-g~~~~v~d~~ge~p 179 (1018)
..+...+.+ +|+++||+|..+.++.+.|..+|+.|.... +|+|.+++.|+.|++.+.. |..-++-+..-+.|
T Consensus 85 ~~yhanI~e~~fnv~ff~qfdiV~NaLDNlaAR~yVNr~C~~a~--vPLIesGt~Gf~GQv~~ii~GkTECyeC~pK~~~ 162 (603)
T KOG2013|consen 85 VPYHANIKEPKFNVEFFRQFDIVLNALDNLAARRYVNRMCLAAS--VPLIESGTGGFLGQVQVIIKGKTECYECIPKPVP 162 (603)
T ss_pred EeccccccCcchHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhc--CCceecCcccccceEEEEecCCcceecccCCCCC
Confidence 999887643 689999999999999999999999999999 9999999999999998754 44333333334455
Q ss_pred cceeeeeeccCCCceeeccccccccc------ccCC--eeE-----EEEeecccc--cC---CCC---Cc--cccccCCc
Q 001747 180 HTGIIASISNDNPALVSCVDDERLEF------QDGD--LVV-----FSEVHGMTE--LN---DGK---PR--KIKSARPY 236 (1018)
Q Consensus 180 ~~~~i~~i~~~~~~~v~~~~~~~~~l------~dgd--~v~-----f~ev~gm~~--ln---~~~---~~--~i~~~~~~ 236 (1018)
.+..+.-|.+....-++|.-=.+|.+ .+++ +.+ -...+.|++ .. +++ .+ .+......
T Consensus 163 kTypvCTIRstPS~~iHCIVWAK~~lF~qlF~~d~~~q~~~~d~~d~d~~e~~t~~~~~~~~et~d~~Er~~~i~~~~~~ 242 (603)
T KOG2013|consen 163 KTYPVCTIRSTPSEPIHCIVWAKHYLFNQLFGEDDDDQYGRHDNADPDNCEDMTEEEAEAFRETEDLKERRESIVEIDKN 242 (603)
T ss_pred CcCCceEeecCCCCceeeeeehHhHHHHHHhccccccccccccccCchhhhccChhhhhhhccchHHHHHHHHHHHHhhc
Confidence 56555555543333455532112111 1111 110 011111110 00 000 00 00000000
Q ss_pred ----eeeecccccccc---ceeec--ceEEEeeCCeeecCCchHH-hhcCC---CCcccccCcc-------CCC-CChHH
Q 001747 237 ----SFTLEEDTTNYG---TYVKG--GIVTQVKQPKVLNFKPLRE-ALEDP---GDFLLSDFSK-------FDR-PPPLH 295 (1018)
Q Consensus 237 ----~~~i~~dt~~f~---~y~~g--g~~~qvk~~~~~~f~sL~~-~l~~p---~~~~~~d~~k-------~~~-~~~l~ 295 (1018)
.+.+ ++.-|. .|.++ ..+++.+.|..+.|.+.-. .++.- .+ ..++-.+ ... ...+-
T Consensus 243 ~~~~~~~i--~~klF~~dI~yl~~~e~~wk~r~~p~pl~~~~~i~~~~~t~ns~~q-~~~~a~~~~~~v~~v~~~~~vf~ 319 (603)
T KOG2013|consen 243 LDFGPFKI--FNKLFIYDIEYLLGMEALWKPRSRPVPLSIAEVISTSLETINSIVQ-SITSAQLNDQNVWTVDEGAVVFR 319 (603)
T ss_pred cCCChhhh--hhHHHHHHHHHHHhhhhhccCCCCCCCcchhhccCCccccccchhh-hccccccCCcceeeeccccHHHH
Confidence 0000 011111 12221 1355555566555432211 11100 00 0111100 011 11222
Q ss_pred HHHHHHH-HHHHHhCCCCC--CCCHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHhhcccccCchhhhhhhhhhhh
Q 001747 296 LAFQALD-KFVSELGRFPV--AGSEEDAQKLISVATNINESLGDGRVEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQE 372 (1018)
Q Consensus 296 ~~~~al~-~F~~~~gr~P~--~~~~~D~~~l~~~~~~i~~~~~~~~~~~i~~~~i~~~~~~~~~el~pvaA~iGGiaAQE 372 (1018)
.+.++++ +.....+.+-. ..+..++-+|++.|..+..+.-. ....+.-.++.++...-..|+.+.|+|||+..-|
T Consensus 320 ~~i~~l~~~~~~~~~h~~l~fdKdd~~~~~FVaaaaNiRa~if~--ipmkS~Fdik~mAgnIipaIAtTNAiIagliv~e 397 (603)
T KOG2013|consen 320 LSIQALDLRCPKESDHWYLIFDKDDASTMEFVAAAANIRAHIFG--IPMKSLFDIKQMAGNIIPAIATTNAIIAGLIVTE 397 (603)
T ss_pred HHHHHhcccCCccCCCceEEEcCCcHHHHHHHHHHhhhhhhhhc--cchhhhhchHhHhcccchhhhhhhhHHHHHHHHH
Confidence 3333331 11111111111 12355666777776666444311 1122233467787777778999999999999999
Q ss_pred HhhhhcCCccccceeeeeecC
Q 001747 373 VVKACSGKFHPLYQFFYFDSV 393 (1018)
Q Consensus 373 VIK~iT~kf~Pi~n~~~fD~~ 393 (1018)
.+|.|+|+|.-.+..|++-..
T Consensus 398 aiKvl~~~~~~~~~~f~~~~~ 418 (603)
T KOG2013|consen 398 AIKVLGGDFDDCNMIFLAKRP 418 (603)
T ss_pred HHHHhccchhcceeeEEccCC
Confidence 999999999999998888643
No 72
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.93 E-value=1.4e-26 Score=247.47 Aligned_cols=171 Identities=20% Similarity=0.238 Sum_probs=154.3
Q ss_pred CCCCchhhhhhhhhhhc--cCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCc
Q 001747 6 SNQTDIDEDLHSRQLAV--YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDND 83 (1018)
Q Consensus 6 ~~~~~~~~~~YdRQi~l--~G~~~q~~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~d 83 (1018)
...+..|-.||+||+.+ +|.+||.+|.+++|||||+||+||..+..|+.+|||++.|+|.|+|+.+||.||.+.+++.
T Consensus 37 ~~Ls~dei~RYsRQlilpe~gV~GQ~~Lk~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~DvVe~sNlhRQVlh~ea~ 116 (427)
T KOG2017|consen 37 AGLSLDEILRYSRQLILPEFGVHGQLSLKNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDVVELSNLHRQVLHTEAR 116 (427)
T ss_pred cCCCHHHHHhhhheeeccccccccccccCCccEEEEccCCCCCHHHHHHHHcCCCeecccccceeehhhHHHHHhhhhhh
Confidence 45567788999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHHHhhCCCcEEEEEecCCCh----hhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEEeeecceeE
Q 001747 84 IGKNRALASVQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFG 159 (1018)
Q Consensus 84 iGk~ka~a~~~~L~elNp~V~v~~~~~~l~~----~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~~~~~G~~G 159 (1018)
+|+.||++++..++++||.|+|..+.+.++. +.+++||||++|+|+..+|..|++.|.-.| +|+|+++..++.|
T Consensus 117 vg~~Ka~sA~~~lr~lNs~v~v~~y~~~L~~sNa~~Ii~~YdvVlDCTDN~~TRYLisD~CVlLg--kpLVSgSaLr~EG 194 (427)
T KOG2017|consen 117 VGMHKAESAAAFLRRLNSHVEVQTYNEFLSSSNAFDIIKQYDVVLDCTDNVPTRYLISDVCVLLG--KPLVSGSALRWEG 194 (427)
T ss_pred hhhHHHHHHHHHHHhcCCCceeeechhhccchhHHHHhhccceEEEcCCCccchhhhhhHHHHcC--Ccccccccccccc
Confidence 9999999999999999999999999998875 468999999999999999999999999999 9999999999999
Q ss_pred EEEe-ecCCceEEecCCCCC
Q 001747 160 SVFC-DFGPEFTVVDVDGED 178 (1018)
Q Consensus 160 ~vf~-d~g~~~~v~d~~ge~ 178 (1018)
++-+ .+....++.+-.+.+
T Consensus 195 QLtvYny~~GPCYRClFP~P 214 (427)
T KOG2017|consen 195 QLTVYNYNNGPCYRCLFPNP 214 (427)
T ss_pred eeEEeecCCCceeeecCCCC
Confidence 8833 223334444444333
No 73
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=99.93 E-value=4.6e-25 Score=218.08 Aligned_cols=130 Identities=35% Similarity=0.600 Sum_probs=120.2
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEecC
Q 001747 32 FASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 111 (1018)
Q Consensus 32 ~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~~~ 111 (1018)
+++||+|+|+||+|+++|++|+++|||+|+|+|+|.|+++|++||+|++.+|+|++||++++++|+++||+++++++...
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~ 80 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK 80 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCh----hhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEEeeecceeEEEEe
Q 001747 112 LTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFC 163 (1018)
Q Consensus 112 l~~----~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~~~~~G~~G~vf~ 163 (1018)
+++ ++++++|+||+|.++.+.+..++++|++++ +|||++++.|+.|++..
T Consensus 81 ~~~~~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~--~p~i~~~~~g~~G~~~~ 134 (135)
T PF00899_consen 81 IDEENIEELLKDYDIVIDCVDSLAARLLLNEICREYG--IPFIDAGVNGFYGQVVM 134 (135)
T ss_dssp CSHHHHHHHHHTSSEEEEESSSHHHHHHHHHHHHHTT---EEEEEEEETTEEEEEE
T ss_pred cccccccccccCCCEEEEecCCHHHHHHHHHHHHHcC--CCEEEEEeecCEEEEEE
Confidence 853 467899999999999999999999999999 99999999999999853
No 74
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.93 E-value=1.2e-25 Score=231.33 Aligned_cols=142 Identities=27% Similarity=0.389 Sum_probs=128.0
Q ss_pred cEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCCeEEEEe
Q 001747 432 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQ 511 (1018)
Q Consensus 432 ~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~~i~~~~ 511 (1018)
||+|+||||+||+++++|+++|+ |+|+++|.|.|+.+||+||+++ .+|||++|+++++++++++||+++++++.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gv-----g~i~lvD~D~v~~sNl~Rq~~~-~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~ 74 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGV-----GNLKLVDFDVVEPSNLNRQQYF-LSQIGEPKVEALKENLREINPFVKIEAIN 74 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCC-----CeEEEEeCCEEcCcchhccccc-HhhCCChHHHHHHHHHHHHCCCCEEEEEE
Confidence 69999999999999999999999 9999999999999999999965 67999999999999999999999999999
Q ss_pred cccCCccccccccccccCccEEEEcccChhHHHHHHhhcccc-ccceEecccCCcccceEEEeCcc--cccccCC
Q 001747 512 NRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYF-QKPLLESGTLGAKCNTQMVIPHL--TENYGAS 583 (1018)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~-~~pli~~g~~g~~g~~~v~ip~~--t~~y~~~ 583 (1018)
.++.+++ .+++++++|+||+|+||+++|..+++.|.+. ++|+|.++..|..|++..+.|.. ..||.|.
T Consensus 75 ~~~~~~~----~~~~l~~~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (174)
T cd01487 75 IKIDENN----LEGLFGDCDIVVEAFDNAETKAMLAESLLGNKNKPVVCASGMAGFGDSNNIKTKKISDNFYICG 145 (174)
T ss_pred eecChhh----HHHHhcCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEehhhccCCeEEEEecCCCCCeEEee
Confidence 8887532 1467899999999999999999888888777 99999998889999988777654 4688886
No 75
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=99.93 E-value=6.1e-26 Score=253.82 Aligned_cols=149 Identities=17% Similarity=0.188 Sum_probs=139.9
Q ss_pred Cchhhhhhh---cC-HHHHHHHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccc
Q 001747 411 SRYDAQISV---FG-AKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNI 486 (1018)
Q Consensus 411 ~rydrq~~~---~G-~~~q~~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~di 486 (1018)
.||.||+.+ || .++|++|++++|+ |||+||.++..||. || |+|+|+|.|.||.|||+ +||+++||
T Consensus 53 ~ry~r~l~l~~~~~~~~~Q~kL~~s~Vl---~GGLGs~va~~La~-GV-----g~L~ivD~D~Ve~SNL~--~L~~~~di 121 (318)
T TIGR03603 53 ITIIDNLTLKPMLIVEDYQKHLKKSKVL---LGKFGANIAYNLCN-NV-----GALFISDKTYFQETAEI--DLYSKEFI 121 (318)
T ss_pred HHHHHHhcCccccCcHHHHHHHhhCeee---cccchHHHHHHHhC-CC-----CEEEEEcCCEechhhHH--HHhChhhc
Confidence 799999988 55 5589999999999 99999999999999 99 99999999999999999 99999999
Q ss_pred cchHHHHHHHHHHhhCCCCeEEEEecccCCccccccccccccCccEEEEcccChhHHHH--HHhhccccccceEecccCC
Q 001747 487 GQAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLY--VDQRCLYFQKPLLESGTLG 564 (1018)
Q Consensus 487 G~~Ka~va~~~l~~~np~~~i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~--v~~~c~~~~~pli~~g~~g 564 (1018)
|++|+++|++++.++||+++|+.+ .++++++|+|++|+||+.+|.. +|+.|+.+++|+|.++..|
T Consensus 122 G~~K~~~a~~~L~~lnp~v~i~~~-------------~~li~~~DlVid~tDn~~~r~L~~iN~ac~~~~~PlV~gav~g 188 (318)
T TIGR03603 122 LKKDIRDLTSNLDALELTKNVDEL-------------KDLLKDYNYIIICTEHSNISLLRGLNKLSKETKKPNTIAFIDG 188 (318)
T ss_pred CcHHHHHHHHHHHHhCCCCEEeeH-------------HHHhCCCCEEEECCCCccHhHHHHHHHHHHHHCCCEEEEEEcc
Confidence 999999999999999999999764 2457889999999999999966 9999999999999999999
Q ss_pred cccceEEEeCcccccccCC
Q 001747 565 AKCNTQMVIPHLTENYGAS 583 (1018)
Q Consensus 565 ~~g~~~v~ip~~t~~y~~~ 583 (1018)
+.|++.+++|+.|+||.|.
T Consensus 189 ~~Gqv~~~~P~~t~C~~Cl 207 (318)
T TIGR03603 189 PFVFITCTLPPETGCFECL 207 (318)
T ss_pred CEEEEEEEeCCCCCcHHHc
Confidence 9999888889889999996
No 76
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=99.92 E-value=6.1e-25 Score=232.98 Aligned_cols=145 Identities=22% Similarity=0.258 Sum_probs=131.4
Q ss_pred hhhhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHH
Q 001747 13 EDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALAS 92 (1018)
Q Consensus 13 ~~~YdRQi~l~G~~~q~~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~ 92 (1018)
++.|.++...||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|.|.|+.+||+||+|+ ++|+|++||+++
T Consensus 8 ~~~~~~~~~~~g~~~q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~-~~dvG~~Ka~~a 86 (212)
T PRK08644 8 EEFEAMLASRHTPKLLEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYF-ISQIGMPKVEAL 86 (212)
T ss_pred HHHHHHHHhhcCHHHHHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEee-hhhCCChHHHHH
Confidence 4455666666999999999999999999999999999999999999999999999999999999976 679999999999
Q ss_pred HHHHHhhCCCcEEEEEecCCCh----hhccCCceEEEcccCHHHHHHHHHHHHhc-CCCceeEEeeecceeEE
Q 001747 93 VQKLQELNNAVVLSTLTSKLTK----EQLSDFQAVVFTDISLDKAIEFDDFCHNH-QPAISFIKAEVRGLFGS 160 (1018)
Q Consensus 93 ~~~L~elNp~V~v~~~~~~l~~----~~~~~~dvVI~~~~~~~~~~~ln~~c~~~-~~~i~fi~~~~~G~~G~ 160 (1018)
+++|+++||+++++++...+++ ++++++|+||.|.++.+.+..+++.|+++ + +|+|.+...|.+|+
T Consensus 87 ~~~l~~lnp~v~v~~~~~~i~~~~~~~~~~~~DvVI~a~D~~~~r~~l~~~~~~~~~--~p~I~~~~~~~~~~ 157 (212)
T PRK08644 87 KENLLEINPFVEIEAHNEKIDEDNIEELFKDCDIVVEAFDNAETKAMLVETVLEHPG--KKLVAASGMAGYGD 157 (212)
T ss_pred HHHHHHHCCCCEEEEEeeecCHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhCC--CCEEEeehhhccCC
Confidence 9999999999999999888765 56889999999999999999999999999 9 99999865555443
No 77
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=99.92 E-value=1.2e-24 Score=217.30 Aligned_cols=129 Identities=31% Similarity=0.423 Sum_probs=123.7
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEecCCCh
Q 001747 35 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTK 114 (1018)
Q Consensus 35 ~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~~~l~~ 114 (1018)
+|+|+|+||+|+++++||+++|+++|+|+|+|.|+++||+||||++++|+|++||++++++|+++||+++++.+...+++
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999887654
Q ss_pred ----hhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEEeeecceeEEEEeec
Q 001747 115 ----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDF 165 (1018)
Q Consensus 115 ----~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~~~~~G~~G~vf~d~ 165 (1018)
++++++|+||+|.++.+.+..++++|++++ +|||.+++.|+.|+++++.
T Consensus 81 ~~~~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~--i~~i~~~~~g~~g~~~~~~ 133 (143)
T cd01483 81 DNLDDFLDGVDLVIDAIDNIAVRRALNRACKELG--IPVIDAGGLGLGGDIQVID 133 (143)
T ss_pred hhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEcCCCcEEEEEEEE
Confidence 578999999999999999999999999999 9999999999999999876
No 78
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.92 E-value=9.5e-25 Score=233.39 Aligned_cols=132 Identities=23% Similarity=0.350 Sum_probs=123.4
Q ss_pred cCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCC
Q 001747 23 YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNA 102 (1018)
Q Consensus 23 ~G~~~q~~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~ 102 (1018)
+|.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+||++..++|+|++||++++++|+++||+
T Consensus 1 ~G~e~~~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~ 80 (231)
T cd00755 1 YGEEGLEKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPE 80 (231)
T ss_pred CCHHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEecCCChh----hc-cCCceEEEcccCHHHHHHHHHHHHhcCCCceeEEeeecc
Q 001747 103 VVLSTLTSKLTKE----QL-SDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRG 156 (1018)
Q Consensus 103 V~v~~~~~~l~~~----~~-~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~~~~~G 156 (1018)
++|+++...++++ ++ .+||+||+|.++...+..|+++|++++ +|||++...|
T Consensus 81 ~~V~~~~~~i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~--ip~I~s~g~g 137 (231)
T cd00755 81 CEVDAVEEFLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRK--IPVISSMGAG 137 (231)
T ss_pred cEEEEeeeecCHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhC--CCEEEEeCCc
Confidence 9999999877642 33 469999999999999999999999999 9999875444
No 79
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=99.92 E-value=8.6e-25 Score=229.64 Aligned_cols=158 Identities=32% Similarity=0.455 Sum_probs=129.4
Q ss_pred hhhhhcCHHHHHHHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHH
Q 001747 415 AQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVA 494 (1018)
Q Consensus 415 rq~~~~G~~~q~~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va 494 (1018)
.+...+|.+.|++|++++|+||||||+||+++++|+++|+ |+++|+|.|.||.|||+||+ |..+|+|++|++++
T Consensus 6 ~~~~~~~~~~q~~L~~~~V~IvG~GglGs~ia~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~-~~~~~iG~~Ka~~~ 79 (200)
T TIGR02354 6 ALVARHTPKIVQKLEQATVAICGLGGLGSNVAINLARAGI-----GKLILVDFDVVEPSNLNRQQ-YKASQVGEPKTEAL 79 (200)
T ss_pred HHHHhcCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCC-----CEEEEECCCEEccccccccc-CChhhCCCHHHHHH
Confidence 4456789999999999999999999999999999999999 99999999999999999997 56689999999999
Q ss_pred HHHHHhhCCCCeEEEEecccCCccccccccccccCccEEEEcccChhHHHHHHhhcccc--ccceEe-cccCCcccceEE
Q 001747 495 ASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYF--QKPLLE-SGTLGAKCNTQM 571 (1018)
Q Consensus 495 ~~~l~~~np~~~i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~--~~pli~-~g~~g~~g~~~v 571 (1018)
+++++++||.++++++..++++++ + .++++++|+||+|+||.++|..+...|... ..+++. +|..|+.....+
T Consensus 80 ~~~l~~inp~~~i~~~~~~i~~~~--~--~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~~~~ii~~~g~~g~~~~~~~ 155 (200)
T TIGR02354 80 KENISEINPYTEIEAYDEKITEEN--I--DKFFKDADIVCEAFDNAEAKAMLVNAVLEKYKDKYLIAASGLAGYDDANSI 155 (200)
T ss_pred HHHHHHHCCCCEEEEeeeeCCHhH--H--HHHhcCCCEEEECCCCHHHHHHHHHHHHHHcCCCcEEEEeccccCCCCceE
Confidence 999999999999999999887543 2 467899999999999999999876666554 445554 333333322223
Q ss_pred EeCc-ccccccC
Q 001747 572 VIPH-LTENYGA 582 (1018)
Q Consensus 572 ~ip~-~t~~y~~ 582 (1018)
..+. ...||.|
T Consensus 156 ~~~~~~~~~~~~ 167 (200)
T TIGR02354 156 KTRKISKHFYLC 167 (200)
T ss_pred EecccCCCEEEc
Confidence 2322 2468888
No 80
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=99.91 E-value=1.9e-24 Score=225.67 Aligned_cols=115 Identities=21% Similarity=0.399 Sum_probs=106.0
Q ss_pred cCchhhhhhhcCHHHHHHHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccch
Q 001747 410 NSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQA 489 (1018)
Q Consensus 410 ~~rydrq~~~~G~~~q~~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~ 489 (1018)
..|||||+++||.++|++|++++|+|||+||+|||++|+|+++|| |+|+|+|.|.|+.|||+|||++++ |+|++
T Consensus 6 ~~RYsRQIrLwG~EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGV-----GsItIvDdD~Ve~SNL~RQfl~~~-dvGk~ 79 (287)
T PTZ00245 6 AVRYDRQIRLWGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGV-----RAVAVADEGLVTDADVCTNYLMQG-EAGGT 79 (287)
T ss_pred HHHHhHHHHHhCHHHHHHHhhCeEEEECCCchHHHHHHHHHHcCC-----CeEEEecCCccchhhhcccccccc-ccCCc
Confidence 379999999999999999999999999999999999999999999 999999999999999999999998 78999
Q ss_pred HHHHHHHHHHhhCCCCeEEEEecccCCccccccccccccCccEEEEcccCh
Q 001747 490 KSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNV 540 (1018)
Q Consensus 490 Ka~va~~~l~~~np~~~i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~ 540 (1018)
|+++++++++++||+++|+++..++++. ..|++|+-+.-+.
T Consensus 80 KAeaAa~~L~eLNP~V~V~~i~~rld~~----------n~fqvvV~~~~~l 120 (287)
T PTZ00245 80 RGARALGALQRLNPHVSVYDAVTKLDGS----------SGTRVTMAAVITE 120 (287)
T ss_pred HHHHHHHHHHHHCCCcEEEEcccccCCc----------CCceEEEEEcccH
Confidence 9999999999999999999999887642 3678888775433
No 81
>PRK06153 hypothetical protein; Provisional
Probab=99.90 E-value=1.4e-23 Score=234.73 Aligned_cols=129 Identities=19% Similarity=0.195 Sum_probs=118.4
Q ss_pred HHHHHHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCccc-Ccccccccc--hHHHHHHHHHH
Q 001747 423 KLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQF-LFRDWNIGQ--AKSTVAASAAT 499 (1018)
Q Consensus 423 ~~q~~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqf-lf~~~diG~--~Ka~va~~~l~ 499 (1018)
..|++|++++|+||||||+||.++..||++|| |+|+|+|+|+|+.||||||+ +|+.+|||+ +|++++++++.
T Consensus 169 ~~q~kL~~~~VaIVG~GG~GS~Va~~LAR~GV-----geI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~ 243 (393)
T PRK06153 169 ALSAKLEGQRIAIIGLGGTGSYILDLVAKTPV-----REIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYS 243 (393)
T ss_pred HHHHHHhhCcEEEEcCCccHHHHHHHHHHcCC-----CEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHH
Confidence 57999999999999999999999999999999 99999999999999999998 689999999 99999999999
Q ss_pred hhCCCCeEEEEecccCCccccccccccccCccEEEEcccChhHHHHHHhhccccccceEecccC
Q 001747 500 SINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTL 563 (1018)
Q Consensus 500 ~~np~~~i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~~~pli~~g~~ 563 (1018)
+++| .|+++...+.+++. ..+.++|+||+|+|+.++|..+++.|..+++|+|++|..
T Consensus 244 ~in~--~I~~~~~~I~~~n~-----~~L~~~DiV~dcvDn~~aR~~ln~~a~~~gIP~Id~G~~ 300 (393)
T PRK06153 244 NMRR--GIVPHPEYIDEDNV-----DELDGFTFVFVCVDKGSSRKLIVDYLEALGIPFIDVGMG 300 (393)
T ss_pred HhCC--eEEEEeecCCHHHH-----HHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEeeec
Confidence 9998 46788888865432 356899999999999999999999999999999998864
No 82
>PRK07877 hypothetical protein; Provisional
Probab=99.89 E-value=8.1e-23 Score=248.18 Aligned_cols=148 Identities=24% Similarity=0.276 Sum_probs=137.4
Q ss_pred CchhhhhhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcC-CEEEEEeCCccCcccCCcccccCcCccCch
Q 001747 9 TDIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGV-KSVTLHDEGTVELWDLSSNFVFSDNDIGKN 87 (1018)
Q Consensus 9 ~~~~~~~YdRQi~l~G~~~q~~L~~s~VlIiG~gglG~eiaKnLvlaGV-g~itlvD~d~v~~~dL~~qf~~~~~diGk~ 87 (1018)
.+.-.+||+||+.+||.++|++|++++|+|+|+| +|+.+|.+|+++|| |+|+|+|.|.|+.+||+|| +++.+|+|++
T Consensus 83 ~~~~~~r~~Rn~~~ig~~~Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq-~~~~~diG~~ 160 (722)
T PRK07877 83 REFRAVRLDRNRNKITAEEQERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRV-PAGVFDLGVN 160 (722)
T ss_pred HHhhHHHhhchhhhCCHHHHHHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccc-cCChhhcccH
Confidence 4556789999999999999999999999999996 99999999999996 9999999999999999998 5788999999
Q ss_pred HHHHHHHHHHhhCCCcEEEEEecCCChh----hccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEEeeecceeEEEE
Q 001747 88 RALASVQKLQELNNAVVLSTLTSKLTKE----QLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVF 162 (1018)
Q Consensus 88 ka~a~~~~L~elNp~V~v~~~~~~l~~~----~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~~~~~G~~G~vf 162 (1018)
||++++++|+++||+++|+++...++++ +++++|+||+|.|+++.+..+|+.|++++ ||+|++...+ |.+.
T Consensus 161 Kv~~a~~~l~~inp~i~v~~~~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~--iP~i~~~~~~--g~~~ 235 (722)
T PRK07877 161 KAVVAARRIAELDPYLPVEVFTDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARR--IPVLMATSDR--GLLD 235 (722)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEcCCC--CCcC
Confidence 9999999999999999999999998764 67789999999999999999999999999 9999988555 6664
No 83
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=99.88 E-value=1.1e-22 Score=210.71 Aligned_cols=142 Identities=19% Similarity=0.316 Sum_probs=134.1
Q ss_pred chhhhhhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHH
Q 001747 10 DIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRA 89 (1018)
Q Consensus 10 ~~~~~~YdRQi~l~G~~~q~~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka 89 (1018)
+...+|+.|.-+++|.++.++|++++|+|+|+||+|+.++..|+++|||+|+|+|.|.|+.+|++||.-...+++|++|+
T Consensus 7 ~~~~~rf~~~~~l~G~~~lekl~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv 86 (263)
T COG1179 7 DAYRQRFGGIARLYGEDGLEKLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKV 86 (263)
T ss_pred HHHHHHhhhHHHHcChhHHHHHhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHH
Confidence 55678999999999999999999999999999999999999999999999999999999999999999888899999999
Q ss_pred HHHHHHHHhhCCCcEEEEEecCCChhh-----ccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEEee
Q 001747 90 LASVQKLQELNNAVVLSTLTSKLTKEQ-----LSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAE 153 (1018)
Q Consensus 90 ~a~~~~L~elNp~V~v~~~~~~l~~~~-----~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~~~ 153 (1018)
++++++++++||+++|+++...+++++ ..+||.||+|.|+......|-.+|++++ ||+|++.
T Consensus 87 ~vm~eri~~InP~c~V~~~~~f~t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~k--i~vIss~ 153 (263)
T COG1179 87 EVMKERIKQINPECEVTAINDFITEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRRNK--IPVISSM 153 (263)
T ss_pred HHHHHHHHhhCCCceEeehHhhhCHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHHHcC--CCEEeec
Confidence 999999999999999999999888753 4569999999999999999999999999 9999754
No 84
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.1e-22 Score=215.11 Aligned_cols=154 Identities=23% Similarity=0.459 Sum_probs=143.8
Q ss_pred cCchhhhhhhcCHHHHHHHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccch
Q 001747 410 NSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQA 489 (1018)
Q Consensus 410 ~~rydrq~~~~G~~~q~~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~ 489 (1018)
..-||||||+||.++|++|+++||+|+|.+|+|.|++|||+++|| |++++.|.-.|....++-|||...+++|+.
T Consensus 11 ~alYDRQIRLWG~~AQ~~lr~s~VLlig~k~lgaEiaKnivLaGV-----~~ltlLD~~~Vt~Ed~~~qFli~~~~vg~~ 85 (331)
T KOG2014|consen 11 IALYDRQIRLWGLEAQRRLRKSHVLLIGGKGLGAEIAKNIVLAGV-----GSLTLLDDRLVTEEDVGAQFLISASSVGQT 85 (331)
T ss_pred HHHHHHHHHHccHHHHHhhhhceEEEecCchHHHHHHHHhhhccc-----ceeEEeeccccchhcCCceeEEchhhhchH
Confidence 367999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCeEEEEecccCCccccccccccccCccEEEEcccChhHHHHHHhhccccccceEecccCCcccce
Q 001747 490 KSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNT 569 (1018)
Q Consensus 490 Ka~va~~~l~~~np~~~i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~~~pli~~g~~g~~g~~ 569 (1018)
|+++..++++.+||.++|......+.+. +.+||.+||+||-.--..+.+-.+|..|+.++++++.++..|+.|++
T Consensus 86 raeas~erl~~LNPmV~v~~d~edl~ek-----~eeff~qFdlVV~~~~s~e~~~kvn~icrk~~i~F~a~d~~g~~Gy~ 160 (331)
T KOG2014|consen 86 RAEASLERLQDLNPMVDVSVDKEDLSEK-----DEEFFTQFDLVVATDQSREEKCKVNEICRKLNIAFYAGDCFGLCGYA 160 (331)
T ss_pred HHHHHHHHHHhcCCceEEEechhhhhhc-----chhhhhceeEEEEeccchhhhhhHHHHHHhcCceEEeccccceeeee
Confidence 9999999999999999999988777653 35899999998877778899999999999999999999999999987
Q ss_pred EEEe
Q 001747 570 QMVI 573 (1018)
Q Consensus 570 ~v~i 573 (1018)
-+-+
T Consensus 161 F~dL 164 (331)
T KOG2014|consen 161 FADL 164 (331)
T ss_pred eeeh
Confidence 6644
No 85
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=99.87 E-value=1.9e-22 Score=209.61 Aligned_cols=165 Identities=28% Similarity=0.465 Sum_probs=147.8
Q ss_pred Cchhhhhhh--cCH-HHHHHHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCccccccc
Q 001747 411 SRYDAQISV--FGA-KLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 487 (1018)
Q Consensus 411 ~rydrq~~~--~G~-~~q~~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG 487 (1018)
.-|+|.+++ .|. .-.+||+...|.|||.||+|+-.+.+|.|+|+ |++.+.|.|.||+.|+||-| |+++..|
T Consensus 60 NPYSRLMALqRMgIV~dYErIR~~aVAiVGvGGVGSV~AeMLTRCGI-----GkLlLfDYDkVElANMNRLF-f~P~QaG 133 (422)
T KOG2336|consen 60 NPYSRLMALQRMGIVDDYERIREFAVAIVGVGGVGSVTAEMLTRCGI-----GKLLLFDYDKVELANMNRLF-FQPDQAG 133 (422)
T ss_pred ChHHHHHHHHHhcchhhHHHHhhheeEEEecCchhHHHHHHHHhcCc-----ceEEEeecchhhhhcccccc-cCccccc
Confidence 469999887 453 56799999999999999999999999999999 99999999999999999986 7999999
Q ss_pred chHHHHHHHHHHhhCCCCeEEEEecccCCcccccccccc-----------ccCccEEEEcccChhHHHHHHhhccccccc
Q 001747 488 QAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTF-----------WENITCVINALDNVNARLYVDQRCLYFQKP 556 (1018)
Q Consensus 488 ~~Ka~va~~~l~~~np~~~i~~~~~~~~~~~~~~~~~~~-----------~~~~dvVi~alDn~~ar~~v~~~c~~~~~p 556 (1018)
.+|+++|++.+..+||++.|+.|+.+++.-. + | +.| -+..|+|++|+||++||+.+|..|-..+.-
T Consensus 134 lsKv~AA~~TL~~iNPDV~iE~hn~NITTve-n-F-d~F~~~is~g~~~~gkpvDLVLSCVDNfEARMavN~ACNE~~q~ 210 (422)
T KOG2336|consen 134 LSKVDAAVQTLAEINPDVVIEVHNYNITTVE-N-F-DTFTDRISNGSLCPGKPVDLVLSCVDNFEARMAVNQACNELNQT 210 (422)
T ss_pred chHHHHHHHHHHhcCCCeEEEEeecceeeeh-h-H-HHHHHHhhcCCCCCCCcceEEeeehhhHHHHHHHHHHHHHhhhH
Confidence 9999999999999999999999999887521 1 2 122 135899999999999999999999999999
Q ss_pred eEecccC--CcccceEEEeCcccccccCCC
Q 001747 557 LLESGTL--GAKCNTQMVIPHLTENYGASR 584 (1018)
Q Consensus 557 li~~g~~--g~~g~~~v~ip~~t~~y~~~~ 584 (1018)
+.+||.. ...||.|.++|+.|.||.|.+
T Consensus 211 WmESGVSEnAVSGHIQ~i~PGetACFACaP 240 (422)
T KOG2336|consen 211 WMESGVSENAVSGHIQLIVPGETACFACAP 240 (422)
T ss_pred HHHccCccccccceeEEecCCccceecccC
Confidence 9999986 678999999999999999964
No 86
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=99.87 E-value=9.7e-22 Score=213.81 Aligned_cols=129 Identities=21% Similarity=0.278 Sum_probs=119.7
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCc--cCchHHHHHHHHHHhhCCCcEEEEEecCC
Q 001747 35 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDND--IGKNRALASVQKLQELNNAVVLSTLTSKL 112 (1018)
Q Consensus 35 ~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~d--iGk~ka~a~~~~L~elNp~V~v~~~~~~l 112 (1018)
||+|+|+||+|+++|++|+++|||+|+|+|+|.|+.+||+||++++.+| +|++||++++++|+++||+|+|+.+...+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I 80 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI 80 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence 6999999999999999999999999999999999999999999999999 99999999999999999999999886543
Q ss_pred -----------------C----hhhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEEeeecceeEEEEeecC
Q 001747 113 -----------------T----KEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFG 166 (1018)
Q Consensus 113 -----------------~----~~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~~~~~G~~G~vf~d~g 166 (1018)
+ +++++++|+|+++.|+.+.|..++.+|+.++ +|+|. ...|+.|++..-.|
T Consensus 81 pmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tDn~esR~L~~~~~~~~~--k~~I~-aalGfdg~lvmrhg 152 (307)
T cd01486 81 PMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTDSRESRWLPTLLSAAKN--KLVIN-AALGFDSYLVMRHG 152 (307)
T ss_pred cccccccccccccccccCHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhC--CcEEE-EEeccceEEEEEeC
Confidence 1 2468899999999999999999999999999 99998 58899999987665
No 87
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.9e-22 Score=221.90 Aligned_cols=188 Identities=22% Similarity=0.336 Sum_probs=161.0
Q ss_pred ccCchhhhhhhcCHHHHHHHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccc
Q 001747 409 INSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 488 (1018)
Q Consensus 409 ~~~rydrq~~~~G~~~q~~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~ 488 (1018)
+..|||||+|+||..+|..|..++||++|||++|||++|||++.|| |.++++|.-.|+.+++..+|+...+++|+
T Consensus 6 ~~~kYDRQlRlwge~gQ~~le~a~vCll~~~~~g~e~lKnLvl~Gi-----gs~tvvd~~~v~~~d~g~nF~~~~~~~Gk 80 (523)
T KOG2016|consen 6 PKTKYDRQLRLWGEEGQAALESASVCLLNATPLGSEALKNLVLPGI-----GSFTVVDGSKVEQGDLGNNFFLDAKSIGK 80 (523)
T ss_pred hhhHHHHHHHHHHHHhHhhhhhceEEEecCChhHHHHHHhhccccc-----ccEEEEecceeeecchhhHHHHHHHhhch
Confidence 4579999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhCCCCeEEEEecccCCccccccccccccCccEEEEcccChhHHHHHHhhccccccceEecccCCcccc
Q 001747 489 AKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCN 568 (1018)
Q Consensus 489 ~Ka~va~~~l~~~np~~~i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~~~pli~~g~~g~~g~ 568 (1018)
+||++..+.+++.||+++-......-. .-..-++.||++|++|+.+==+.+....+.++|+.+++||+.+-+.|+.|.
T Consensus 81 srA~a~~e~LqeLN~~V~~~~vee~p~--~Li~~~p~ff~qFtvViatnl~E~~~~kl~~~l~~~~vpll~~rs~Gl~G~ 158 (523)
T KOG2016|consen 81 SRAEATLEFLQELNPSVSGSFVEESPD--FLIDNDPSFFSQFTVVIATNLNEQTLLKLAEILREANVPLLLTRSYGLAGT 158 (523)
T ss_pred hHHHHHHHHHHHhChhhhcCccccChh--hhhhcCchhhheeeeeeccccchhhhhhhHHHHHhcCCceEEEeeecceEE
Confidence 999999999999999997766654322 212235789999999998877778888999999999999999999999999
Q ss_pred eEEEeCcccccccCCCCCCCCCCCcccccCCCCChhhH
Q 001747 569 TQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHC 606 (1018)
Q Consensus 569 ~~v~ip~~t~~y~~~~~~~~~~~p~Ct~~~~P~~~~h~ 606 (1018)
+++.+.. +......|......+..-.+||+.++|.
T Consensus 159 iRI~ikE---H~iieshPD~~~~DLRL~nPwpeLi~~v 193 (523)
T KOG2016|consen 159 IRISIKE---HTIIESHPDNPLDDLRLDNPWPELIEYV 193 (523)
T ss_pred EEEEeee---ccccccCCCCcccccccCCCcHHHHHHH
Confidence 9999875 2222234444456677777777777764
No 88
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=99.86 E-value=1.4e-21 Score=218.90 Aligned_cols=146 Identities=18% Similarity=0.185 Sum_probs=133.9
Q ss_pred CCchhhhhhhhhhhc---cC-HHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCc
Q 001747 8 QTDIDEDLHSRQLAV---YG-RETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDND 83 (1018)
Q Consensus 8 ~~~~~~~~YdRQi~l---~G-~~~q~~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~d 83 (1018)
.+..+-+||+|||.+ || .++|++|++++|+ +||+|+.++.+|+. |||+|+|+|+|.|+.+||+ ++++++|
T Consensus 47 l~~~~~~ry~r~l~l~~~~~~~~~Q~kL~~s~Vl---~GGLGs~va~~La~-GVg~L~ivD~D~Ve~SNL~--~L~~~~d 120 (318)
T TIGR03603 47 LTKFNLITIIDNLTLKPMLIVEDYQKHLKKSKVL---LGKFGANIAYNLCN-NVGALFISDKTYFQETAEI--DLYSKEF 120 (318)
T ss_pred cCHHHHHHHHHHhcCccccCcHHHHHHHhhCeee---cccchHHHHHHHhC-CCCEEEEEcCCEechhhHH--HHhChhh
Confidence 344566899999999 56 5589999999999 99999999999999 9999999999999999999 8999999
Q ss_pred cCchHHHHHHHHHHhhCCCcEEEEEecCCChhhccCCceEEEcccCHHHHHH--HHHHHHhcCCCceeEEeeecceeEEE
Q 001747 84 IGKNRALASVQKLQELNNAVVLSTLTSKLTKEQLSDFQAVVFTDISLDKAIE--FDDFCHNHQPAISFIKAEVRGLFGSV 161 (1018)
Q Consensus 84 iGk~ka~a~~~~L~elNp~V~v~~~~~~l~~~~~~~~dvVI~~~~~~~~~~~--ln~~c~~~~~~i~fi~~~~~G~~G~v 161 (1018)
+|++||++++++|.++||.++|+.. .+.++++|+||+|.+++..+.. +|++|.+++ +|||++...|+.|++
T Consensus 121 iG~~K~~~a~~~L~~lnp~v~i~~~-----~~li~~~DlVid~tDn~~~r~L~~iN~ac~~~~--~PlV~gav~g~~Gqv 193 (318)
T TIGR03603 121 ILKKDIRDLTSNLDALELTKNVDEL-----KDLLKDYNYIIICTEHSNISLLRGLNKLSKETK--KPNTIAFIDGPFVFI 193 (318)
T ss_pred cCcHHHHHHHHHHHHhCCCCEEeeH-----HHHhCCCCEEEECCCCccHhHHHHHHHHHHHHC--CCEEEEEEccCEEEE
Confidence 9999999999999999999999864 3578899999999999998865 999999999 999999999999998
Q ss_pred EeecC
Q 001747 162 FCDFG 166 (1018)
Q Consensus 162 f~d~g 166 (1018)
..-++
T Consensus 194 ~~~~P 198 (318)
T TIGR03603 194 TCTLP 198 (318)
T ss_pred EEEeC
Confidence 86553
No 89
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.86 E-value=1.9e-21 Score=200.28 Aligned_cols=126 Identities=23% Similarity=0.251 Sum_probs=115.7
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEecCCCh
Q 001747 35 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTK 114 (1018)
Q Consensus 35 ~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~~~l~~ 114 (1018)
||+|+|+||+|++++++|+++|||+++|+|.|.|+.+||+||+|. .+|+|++||++++++|+++||+++++++...+++
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~-~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~ 79 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYF-LSQIGEPKVEALKENLREINPFVKIEAINIKIDE 79 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhccccc-HhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence 699999999999999999999999999999999999999999965 5799999999999999999999999999888765
Q ss_pred ----hhccCCceEEEcccCHHHHHHHHHHHHhc-CCCceeEEeeecceeEEEEe
Q 001747 115 ----EQLSDFQAVVFTDISLDKAIEFDDFCHNH-QPAISFIKAEVRGLFGSVFC 163 (1018)
Q Consensus 115 ----~~~~~~dvVI~~~~~~~~~~~ln~~c~~~-~~~i~fi~~~~~G~~G~vf~ 163 (1018)
++++++|+||.|.++.+.+..+++.|.++ + +|||++...|++|++..
T Consensus 80 ~~~~~~l~~~DlVi~~~d~~~~r~~i~~~~~~~~~--ip~i~~~~~~~~~~~~~ 131 (174)
T cd01487 80 NNLEGLFGDCDIVVEAFDNAETKAMLAESLLGNKN--KPVVCASGMAGFGDSNN 131 (174)
T ss_pred hhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHCC--CCEEEEehhhccCCeEE
Confidence 57889999999999999998787777766 8 99999998888888764
No 90
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=99.86 E-value=2.8e-21 Score=203.11 Aligned_cols=139 Identities=21% Similarity=0.257 Sum_probs=119.6
Q ss_pred hhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhh
Q 001747 20 LAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQEL 99 (1018)
Q Consensus 20 i~l~G~~~q~~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~el 99 (1018)
..-.|.++|++|++++|+|+|+||+|+++|++|+++|||+++|+|.|.|+.+||+||+| ..+++|++|+++++++|+++
T Consensus 8 ~~~~~~~~q~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~-~~~~iG~~Ka~~~~~~l~~i 86 (200)
T TIGR02354 8 VARHTPKIVQKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQY-KASQVGEPKTEALKENISEI 86 (200)
T ss_pred HHhcCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccC-ChhhCCCHHHHHHHHHHHHH
Confidence 34479999999999999999999999999999999999999999999999999999976 56799999999999999999
Q ss_pred CCCcEEEEEecCCChh----hccCCceEEEcccCHHHHHHHH-HHHHhcCCCceeEEeeecceeEEEE
Q 001747 100 NNAVVLSTLTSKLTKE----QLSDFQAVVFTDISLDKAIEFD-DFCHNHQPAISFIKAEVRGLFGSVF 162 (1018)
Q Consensus 100 Np~V~v~~~~~~l~~~----~~~~~dvVI~~~~~~~~~~~ln-~~c~~~~~~i~fi~~~~~G~~G~vf 162 (1018)
||+++++++...++++ ++.++|+||.|.++.+.+..++ ++|+.++ .+++.+ ..|+.|+.+
T Consensus 87 np~~~i~~~~~~i~~~~~~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~--~~~ii~-~~g~~g~~~ 151 (200)
T TIGR02354 87 NPYTEIEAYDEKITEENIDKFFKDADIVCEAFDNAEAKAMLVNAVLEKYK--DKYLIA-ASGLAGYDD 151 (200)
T ss_pred CCCCEEEEeeeeCCHhHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHcC--CCcEEE-EeccccCCC
Confidence 9999999998888754 5778999999999988887755 5555555 444333 367777664
No 91
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=99.86 E-value=2.7e-21 Score=227.28 Aligned_cols=141 Identities=20% Similarity=0.233 Sum_probs=129.6
Q ss_pred cCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCcc---CchHHHHHHHHHHhh
Q 001747 23 YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDI---GKNRALASVQKLQEL 99 (1018)
Q Consensus 23 ~G~~~q~~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~di---Gk~ka~a~~~~L~el 99 (1018)
+-.-+.++|++++|||+|+|||||++|++|+++|||+|||+|+|.|+.+||+||++++.+|+ |++||++++++|+++
T Consensus 328 lP~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~I 407 (664)
T TIGR01381 328 HPDLQLERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRI 407 (664)
T ss_pred CChhhHHHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHH
Confidence 34445599999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred CCCcEEEEEecCC-------Ch--------------hhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEEeeeccee
Q 001747 100 NNAVVLSTLTSKL-------TK--------------EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLF 158 (1018)
Q Consensus 100 Np~V~v~~~~~~l-------~~--------------~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~~~~~G~~ 158 (1018)
||.|+++.+...+ ++ ++++++|+|++|.|+.++|..++.+|..++ +|+|.+ ..|+.
T Consensus 408 nP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~tDn~esR~L~n~~c~~~~--kplI~a-AlGfd 484 (664)
T TIGR01381 408 FPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLLDSREARWLPTVLCSRHK--KIAISA-ALGFD 484 (664)
T ss_pred CCCcEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhC--CCEEEE-Eeccc
Confidence 9999999887652 22 367899999999999999999999999999 999998 58999
Q ss_pred EEEEeecC
Q 001747 159 GSVFCDFG 166 (1018)
Q Consensus 159 G~vf~d~g 166 (1018)
|++..-.|
T Consensus 485 g~lvmrhG 492 (664)
T TIGR01381 485 SYVVMRHG 492 (664)
T ss_pred eEEEEEec
Confidence 99988766
No 92
>PF02134 UBACT: Repeat in ubiquitin-activating (UBA) protein; InterPro: IPR000127 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme is responsible for activating ubiquitin, the first step in ubiquitinylation. The E1 enzyme hydrolyses ATP and adenylates the C-terminal glycine residue of ubiquitin, and then links this residue to the active site cysteine of E1, yielding a ubiquitin-thioester and free AMP. To be fully active, E1 must non-covalently bind to and adenylate a second ubiquitin molecule. The E1 enzyme can then transfer the thioester-linked ubiquitin molecule to a cysteine residue on the ubiquitin-conjugating enzyme, E2, in an ATP-dependent reaction. This domain is found 2 times in each member of the ubiquitin activating enzymes and is located downstream of the active site cysteine [].; GO: 0005524 ATP binding, 0008641 small protein activating enzyme activity, 0006464 protein modification process; PDB: 1Z7L_A 3CMM_A 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H ....
Probab=99.84 E-value=1e-21 Score=168.76 Aligned_cols=66 Identities=47% Similarity=0.795 Sum_probs=55.7
Q ss_pred eeeccCCCCchhHHHHHHhhhhhhccCCCCccHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHhcC
Q 001747 817 QFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDG 884 (1018)
Q Consensus 817 ~feKDdd~n~hidFv~aasNLRa~ny~I~~~~~~~~k~iAG~IIPAIaTTtA~Vagl~~lEl~K~l~~ 884 (1018)
+|||||+. |++||+|+|||||++|+||+.|++++++++|+||||++||||+|||++|+|++|++++
T Consensus 1 ~Fd~dd~~--h~~fI~a~anLrA~~f~I~~~~~~~~~~i~~~iIP~~~~t~~iva~~~~~e~~k~~~~ 66 (67)
T PF02134_consen 1 EFDKDDPL--HLDFIYAAANLRAQNFGIPPLDREEIKKIAGNIIPAFAPTNAIVAGIAVNELYKLLQN 66 (67)
T ss_dssp ---TTSHH--HHHHHHHHHHHHHHHTT---S-HHHHHHHHTTEE-B-HHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCcHH--HHHHHHHHHHHHHHHhCCCcccHHHHHHHhcCcCCCcCCchhHHHHHHHHHHHHHHhc
Confidence 59999986 9999999999999999999999999999999999999999999999999999999987
No 93
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=3.2e-21 Score=203.66 Aligned_cols=158 Identities=22% Similarity=0.316 Sum_probs=141.7
Q ss_pred CchhhhhhhcCHHHHHHHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchH
Q 001747 411 SRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAK 490 (1018)
Q Consensus 411 ~rydrq~~~~G~~~q~~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~K 490 (1018)
+...|++.+||.++++||+++-|+||||||+|+.++-+|+++|+ ++|.|||+|.|.+|.||||...+-.|||.||
T Consensus 55 eqLarN~aFfGee~m~kl~~syVVVVG~GgVGSwv~nmL~RSG~-----qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK 129 (430)
T KOG2018|consen 55 EQLARNYAFFGEEGMEKLTNSYVVVVGAGGVGSWVANMLLRSGV-----QKIRIVDFDQVSLSSLNRHSCATLADVGTPK 129 (430)
T ss_pred HHHHhHHhhhhhhHHHHhcCcEEEEEecCchhHHHHHHHHHhcC-----ceEEEechhhccHhhhhhhhhhhHhhcCCch
Confidence 44567788999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCeEEEEecccCCccccccccccccCccEEEEcccChhHHHHHHhhccccccceEecccCCcccc-e
Q 001747 491 STVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCN-T 569 (1018)
Q Consensus 491 a~va~~~l~~~np~~~i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~~~pli~~g~~g~~g~-~ 569 (1018)
+.++++.++++.|.+.|++...-++.++++ +-.+.+.|+|++|+||.+++--+-++|..+++++|.|-..+.+.. +
T Consensus 130 ~~clkkh~skiaPw~eIdar~~l~~~~s~e---dll~gnPdFvvDciDNidtKVdLL~y~~~~~l~Viss~GaaaksDPT 206 (430)
T KOG2018|consen 130 VMCLKKHFSKIAPWCEIDARNMLWTSSSEE---DLLSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVISSTGAAAKSDPT 206 (430)
T ss_pred HHHHHHHHHhhCccceecHHHhhcCCCchh---hhhcCCCCeEeEhhhhhhhhhHHHHHHHHcCCceEeccCccccCCCc
Confidence 999999999999999999999988877653 234567999999999999999999999999999997766666655 5
Q ss_pred EEEeCcc
Q 001747 570 QMVIPHL 576 (1018)
Q Consensus 570 ~v~ip~~ 576 (1018)
.+-+.++
T Consensus 207 rv~v~Di 213 (430)
T KOG2018|consen 207 RVNVADI 213 (430)
T ss_pred eeehhhc
Confidence 5555543
No 94
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=2.5e-20 Score=217.63 Aligned_cols=152 Identities=20% Similarity=0.329 Sum_probs=143.7
Q ss_pred hhhhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCC-----EEEEEeCCccCcccCCcccccCcCccCch
Q 001747 13 EDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVK-----SVTLHDEGTVELWDLSSNFVFSDNDIGKN 87 (1018)
Q Consensus 13 ~~~YdRQi~l~G~~~q~~L~~s~VlIiG~gglG~eiaKnLvlaGVg-----~itlvD~d~v~~~dL~~qf~~~~~diGk~ 87 (1018)
..|||-||.++|..-|+||.+.|+++||+|++|||.+||++++||| .|++.|.|.++.+||+|||+++..|||++
T Consensus 410 gsRYD~qiavfG~~fqeKL~~~~~FlVGaGAIGCE~LKN~am~Gvg~g~~g~ItVTDmD~IEkSNLnRQFLFR~~dVgk~ 489 (1013)
T KOG2012|consen 410 GSRYDGQIAVFGAKFQEKLADQKVFLVGAGAIGCELLKNFALMGVGCGNSGKITVTDMDHIEKSNLNRQFLFRPWDVGKP 489 (1013)
T ss_pred cCccccchhhhchHHHHHHhhCcEEEEccchhhHHHHHhhhheeeccCCCCceEEeccchhhhccccceeeccccccCch
Confidence 4699999999999999999999999999999999999999999995 69999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCcEEEEEecCC--------ChhhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEEeeecceeE
Q 001747 88 RALASVQKLQELNNAVVLSTLTSKL--------TKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFG 159 (1018)
Q Consensus 88 ka~a~~~~L~elNp~V~v~~~~~~l--------~~~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~~~~~G~~G 159 (1018)
|++.++.....+||+++|.++...+ +++||.+.|+|..+.|+.+.|..++.-|.-+. +|++.+++.|.-|
T Consensus 490 KSe~AA~A~~~mNp~l~I~a~~~rvgpeTE~If~D~Ff~~ld~VanALDNVdAR~YvD~RCv~~~--kPLLESGTlGTKG 567 (1013)
T KOG2012|consen 490 KSEVAAAAARGMNPDLNIIALQNRVGPETEHIFNDEFFENLDGVANALDNVDARRYVDRRCVYYR--KPLLESGTLGTKG 567 (1013)
T ss_pred HHHHHHHHHHhcCCCceeeehhhccCcccccccchhHHhhhHHHHHhhcchhhhhhhhhhhhhhc--cchhhccCcCCcc
Confidence 9999999999999999999987764 45789999999999999999999999999999 9999999999999
Q ss_pred EEEeecC
Q 001747 160 SVFCDFG 166 (1018)
Q Consensus 160 ~vf~d~g 166 (1018)
..-+-.+
T Consensus 568 ntQVvvP 574 (1013)
T KOG2012|consen 568 NTQVVVP 574 (1013)
T ss_pred ceeEEec
Confidence 7777665
No 95
>PRK06153 hypothetical protein; Provisional
Probab=99.79 E-value=6.3e-19 Score=197.53 Aligned_cols=126 Identities=13% Similarity=0.147 Sum_probs=115.2
Q ss_pred HHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCccc-ccCcCccCc--hHHHHHHHHHHhhCC
Q 001747 25 RETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNF-VFSDNDIGK--NRALASVQKLQELNN 101 (1018)
Q Consensus 25 ~~~q~~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf-~~~~~diGk--~ka~a~~~~L~elNp 101 (1018)
.+.|++|++++|+|+||||+|+.++..|+++|||+|+|+|+|.|+.+||+||+ +++++|+|+ +||+++++++.++||
T Consensus 168 ~~~q~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~ 247 (393)
T PRK06153 168 GALSAKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRR 247 (393)
T ss_pred HHHHHHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCC
Confidence 45699999999999999999999999999999999999999999999999998 568899999 999999999999998
Q ss_pred CcEEEEEecCCChh---hccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEEeee
Q 001747 102 AVVLSTLTSKLTKE---QLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEV 154 (1018)
Q Consensus 102 ~V~v~~~~~~l~~~---~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~~~~ 154 (1018)
. |.++...++++ .+.++|+||+|.|+.+.+..|+++|++++ ||||.+++
T Consensus 248 ~--I~~~~~~I~~~n~~~L~~~DiV~dcvDn~~aR~~ln~~a~~~g--IP~Id~G~ 299 (393)
T PRK06153 248 G--IVPHPEYIDEDNVDELDGFTFVFVCVDKGSSRKLIVDYLEALG--IPFIDVGM 299 (393)
T ss_pred e--EEEEeecCCHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcC--CCEEEeee
Confidence 4 56666667654 57889999999999999999999999999 99998664
No 96
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=99.74 E-value=7.7e-18 Score=180.69 Aligned_cols=129 Identities=16% Similarity=0.183 Sum_probs=114.6
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhcC-----C-----EEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhC
Q 001747 31 LFASNILVSGMQGLGAEIAKNLILAGV-----K-----SVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELN 100 (1018)
Q Consensus 31 L~~s~VlIiG~gglG~eiaKnLvlaGV-----g-----~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elN 100 (1018)
-+.++|+|+|+||+|++++++|+++|+ | +++|+|+|.|+.+||+||+ +.++|||++||+++++++...|
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQl-f~~~dVG~~Ka~v~~~ri~~~~ 87 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQA-FYPADVGQNKAIVLVNRLNQAM 87 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhccc-CChhHCCcHHHHHHHHHHHhcc
Confidence 368999999999999999999999973 4 9999999999999999995 5568999999999999999888
Q ss_pred CCcEEEEEecCCCh-hhccCCceEEEcccCHHHHHHHHHHHHh---cCCCceeEEeeecceeEEEEe
Q 001747 101 NAVVLSTLTSKLTK-EQLSDFQAVVFTDISLDKAIEFDDFCHN---HQPAISFIKAEVRGLFGSVFC 163 (1018)
Q Consensus 101 p~V~v~~~~~~l~~-~~~~~~dvVI~~~~~~~~~~~ln~~c~~---~~~~i~fi~~~~~G~~G~vf~ 163 (1018)
.++++++...+++ +++.++|+||.|.|+.+.|..|++.|++ .+ +||+.+++.+.-|++.+
T Consensus 88 -~~~i~a~~~~~~~~~~~~~~DiVi~avDn~~aR~~l~~~~~~~~~~~--~~~ld~Gn~~~~gqv~~ 151 (244)
T TIGR03736 88 -GTDWTAHPERVERSSTLHRPDIVIGCVDNRAARLAILRAFEGGYSGY--AYWLDLGNRADDGQVIL 151 (244)
T ss_pred -CceEEEEEeeeCchhhhcCCCEEEECCCCHHHHHHHHHHHHHhcccc--cceecccCCCCCCcEEE
Confidence 7899998877664 3567899999999999999999999988 24 79999999999887765
No 97
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=5.6e-17 Score=171.80 Aligned_cols=138 Identities=21% Similarity=0.339 Sum_probs=126.3
Q ss_pred hhhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHH
Q 001747 14 DLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASV 93 (1018)
Q Consensus 14 ~~YdRQi~l~G~~~q~~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~ 93 (1018)
+...|.+.++|.++|+||+++-|.|+|+||+|+.++-.|+++||++|.|+|.|.|+.+.|+|+-...-.|+|.||+.+++
T Consensus 55 eqLarN~aFfGee~m~kl~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~clk 134 (430)
T KOG2018|consen 55 EQLARNYAFFGEEGMEKLTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMCLK 134 (430)
T ss_pred HHHHhHHhhhhhhHHHHhcCcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHHHH
Confidence 44557788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCcEEEEEecCCCh----h-hccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEEee
Q 001747 94 QKLQELNNAVVLSTLTSKLTK----E-QLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAE 153 (1018)
Q Consensus 94 ~~L~elNp~V~v~~~~~~l~~----~-~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~~~ 153 (1018)
++++++.|+++|++...-.+. + .+.+-|.||+|.++.++..-|-++|+.++ ++.|++.
T Consensus 135 kh~skiaPw~eIdar~~l~~~~s~edll~gnPdFvvDciDNidtKVdLL~y~~~~~--l~Viss~ 197 (430)
T KOG2018|consen 135 KHFSKIAPWCEIDARNMLWTSSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYCYNHG--LKVISST 197 (430)
T ss_pred HHHHhhCccceecHHHhhcCCCchhhhhcCCCCeEeEhhhhhhhhhHHHHHHHHcC--CceEecc
Confidence 999999999999987765443 2 34567999999999999999999999999 9999743
No 98
>PF10585 UBA_e1_thiolCys: Ubiquitin-activating enzyme active site ; InterPro: IPR019572 Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin-conjugating enzymes (E2) []. This domain carries the last of five conserved cysteines that is part of the active site of the enzyme, responsible for ubiquitin thiolester complex formation, the active site being represented by the sequence motif PICTLKNFP []. Not all proteins in this entry contain a functional active site.; PDB: 3CMM_A 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B 2PX9_A 1Z7L_A 3GZN_D 3DBL_F 1R4N_H ....
Probab=99.57 E-value=4.7e-16 Score=122.06 Aligned_cols=45 Identities=49% Similarity=1.046 Sum_probs=40.1
Q ss_pred cccccccCCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhc
Q 001747 575 HLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLE 619 (1018)
Q Consensus 575 ~~t~~y~~~~~~~~~~~p~Ct~~~~P~~~~h~i~wAk~~f~~~F~ 619 (1018)
++|+||+|.++|+++++|+||||+||+.++|||+|||++|+++|+
T Consensus 1 ~~Tecy~c~~~~~~~~~P~CTir~~P~~~~HcI~wAk~~f~~~F~ 45 (45)
T PF10585_consen 1 HVTECYECSPDPPEKSYPVCTIRNFPRTPEHCIEWAKDLFEELFG 45 (45)
T ss_dssp TTS--TTCSGGGSSSSEEHHHHHTS-SSHHHHHHHHHHHHHHHHT
T ss_pred CccccccCCCCCCCCCCCcchhhcCCCCchHHHHHHHHHHHHHhC
Confidence 479999999999999999999999999999999999999999995
No 99
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=99.52 E-value=2.3e-14 Score=149.72 Aligned_cols=151 Identities=23% Similarity=0.358 Sum_probs=126.3
Q ss_pred hhhhhhhhhhhc--cC-HHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCch
Q 001747 11 IDEDLHSRQLAV--YG-RETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKN 87 (1018)
Q Consensus 11 ~~~~~YdRQi~l--~G-~~~q~~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ 87 (1018)
.|.+-|||-+.| +| .+.-+|++...|.|+|.||+|+-+|.-|.+.|||++.|+|.|.|+..|++|-| ++++..|.+
T Consensus 57 VDSNPYSRLMALqRMgIV~dYErIR~~aVAiVGvGGVGSV~AeMLTRCGIGkLlLfDYDkVElANMNRLF-f~P~QaGls 135 (422)
T KOG2336|consen 57 VDSNPYSRLMALQRMGIVDDYERIREFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLF-FQPDQAGLS 135 (422)
T ss_pred hcCChHHHHHHHHHhcchhhHHHHhhheeEEEecCchhHHHHHHHHhcCcceEEEeecchhhhhcccccc-cCcccccch
Confidence 356789998887 56 45678999999999999999999999999999999999999999999999975 567789999
Q ss_pred HHHHHHHHHHhhCCCcEEEEEecCCCh-hh---------------ccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEE
Q 001747 88 RALASVQKLQELNNAVVLSTLTSKLTK-EQ---------------LSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIK 151 (1018)
Q Consensus 88 ka~a~~~~L~elNp~V~v~~~~~~l~~-~~---------------~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~ 151 (1018)
|++|+.+.|.++||+|.++++.-.++. +. =+..|+|+.|.++++.|..+|..|-+.+ .-|.-
T Consensus 136 Kv~AA~~TL~~iNPDV~iE~hn~NITTvenFd~F~~~is~g~~~~gkpvDLVLSCVDNfEARMavN~ACNE~~--q~WmE 213 (422)
T KOG2336|consen 136 KVDAAVQTLAEINPDVVIEVHNYNITTVENFDTFTDRISNGSLCPGKPVDLVLSCVDNFEARMAVNQACNELN--QTWME 213 (422)
T ss_pred HHHHHHHHHHhcCCCeEEEEeecceeeehhHHHHHHHhhcCCCCCCCcceEEeeehhhHHHHHHHHHHHHHhh--hHHHH
Confidence 999999999999999999999876642 11 1236999999999999999999999988 66665
Q ss_pred eee--cceeEEEEee
Q 001747 152 AEV--RGLFGSVFCD 164 (1018)
Q Consensus 152 ~~~--~G~~G~vf~d 164 (1018)
+++ ...-|.+...
T Consensus 214 SGVSEnAVSGHIQ~i 228 (422)
T KOG2336|consen 214 SGVSENAVSGHIQLI 228 (422)
T ss_pred ccCccccccceeEEe
Confidence 544 2334555433
No 100
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=99.46 E-value=1e-13 Score=162.20 Aligned_cols=146 Identities=20% Similarity=0.241 Sum_probs=124.0
Q ss_pred Cchhhhhhhc------CHHHHHHHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccc
Q 001747 411 SRYDAQISVF------GAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDW 484 (1018)
Q Consensus 411 ~rydrq~~~~------G~~~q~~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~ 484 (1018)
+||..||.+| |....++-+++||+|+|.||+|+.++.+|+.+|+ ++|+.+|.|.+ .|||||
T Consensus 104 ERYaaqI~F~~~fs~s~~~rF~~qR~akVlVlG~Gg~~s~lv~sL~~sG~-----~~I~~vd~D~v-~SNlnR------- 170 (637)
T TIGR03693 104 DRYAAQIEFIEADADSGALKFELSRNAKILAAGSGDFLTKLVRSLIDSGF-----PRFHAIVTDAE-EHALDR------- 170 (637)
T ss_pred HHHHHHHHHHHHhccCchhhhhhhhcccEEEEecCchHHHHHHHHHhcCC-----CcEEEEecccc-chhhhH-------
Confidence 8999999885 5566677799999999999999999999999999 99999999999 999999
Q ss_pred cccchHHHHHHHHHHhhCCCCeEEEEecccCCccccccccccccCccEEEEcccChh--HHHHHHhhccccc---cceEe
Q 001747 485 NIGQAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVN--ARLYVDQRCLYFQ---KPLLE 559 (1018)
Q Consensus 485 diG~~Ka~va~~~l~~~np~~~i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~--ar~~v~~~c~~~~---~pli~ 559 (1018)
||+. ++.|++ +||+++|+.+.... .+.+ .+.++.+|+||...|++. --.++|+.|+..+ +|++-
T Consensus 171 -IgEl-~e~A~~----~n~~v~v~~i~~~~---~~dl--~ev~~~~DiVi~vsDdy~~~~Lr~lN~acvkegk~~IPai~ 239 (637)
T TIGR03693 171 -IHEL-AEIAEE----TDDALLVQEIDFAE---DQHL--HEAFEPADWVLYVSDNGDIDDLHALHAFCKEEGKGFIPAIC 239 (637)
T ss_pred -HHHH-HHHHHH----hCCCCceEeccCCc---chhH--HHhhcCCcEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEE
Confidence 8877 666665 99999999997622 2222 356789999999999664 4568999999999 67778
Q ss_pred cccCCcccceEEEeCcccccccC
Q 001747 560 SGTLGAKCNTQMVIPHLTENYGA 582 (1018)
Q Consensus 560 ~g~~g~~g~~~v~ip~~t~~y~~ 582 (1018)
+|..+..|-+.. |+.|+||.|
T Consensus 240 ~G~~~liGPlft--PgkTGCWeC 260 (637)
T TIGR03693 240 LKQVGLAGPVFQ--QHGDECFEA 260 (637)
T ss_pred cccceeecceEC--CCCCcHHHH
Confidence 888888887654 999999999
No 101
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=99.39 E-value=2.9e-13 Score=152.15 Aligned_cols=190 Identities=20% Similarity=0.253 Sum_probs=139.4
Q ss_pred HHHHHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCccccccc---chHHHHHHHHHHh
Q 001747 424 LQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG---QAKSTVAASAATS 500 (1018)
Q Consensus 424 ~q~~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG---~~Ka~va~~~l~~ 500 (1018)
..+++.+.|+++.|||.+||.++++|.--|| +|||.+|..+|..||--||.||+-+|-+ ++||++|++++++
T Consensus 334 nLd~is~~KcLLLGAGTLGC~VAR~Ll~WGv-----RhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rLk~ 408 (669)
T KOG2337|consen 334 NLDIISQTKCLLLGAGTLGCNVARNLLGWGV-----RHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRLKE 408 (669)
T ss_pred chhhhhcceeEEecCcccchHHHHHHHhhcc-----ceEEEEecCeeeccchhhhhhhhhhhhhccCCcchHHHHHHHHH
Confidence 3489999999999999999999999999999 9999999999999999999999998875 9999999999999
Q ss_pred hCCCCeEEEEecccC-------Ccc-ccc---c--ccccccCccEEEEcccChhHHHHHHhhccccccceEecccCCccc
Q 001747 501 INPRLNIEALQNRVG-------PET-ENV---F--DDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKC 567 (1018)
Q Consensus 501 ~np~~~i~~~~~~~~-------~~~-~~~---~--~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~~~pli~~g~~g~~g 567 (1018)
|+|.+.-+.+...+. +.. +.. + -+++.+..|+|+-.+|+.++|..-.-+|...+|-+|++. +|+-.
T Consensus 409 IfP~m~atG~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~HDviFLLtDsRESRWLPtll~a~~~KivINaA-LGFDs 487 (669)
T KOG2337|consen 409 IFPSMEATGYVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKDHDVIFLLTDSRESRWLPTLLAAAKNKIVINAA-LGFDS 487 (669)
T ss_pred hCccccccceEEeccCCCCccchhhHHHHHHHHHHHHHHHhhcceEEEEeccchhhhhHHHHHhhhcceEeeee-cccce
Confidence 999998777655443 110 000 0 034678999999999999999999989999999999654 34322
Q ss_pred ceEE-------------------EeC-cccccccCCC--CCCC----CC-CCcccccCCCCChhhHHHHHHHHhhhhhcc
Q 001747 568 NTQM-------------------VIP-HLTENYGASR--DPPE----KQ-APMCTVHSFPHNIDHCLTWARSEFEGLLEK 620 (1018)
Q Consensus 568 ~~~v-------------------~ip-~~t~~y~~~~--~~~~----~~-~p~Ct~~~~P~~~~h~i~wAk~~f~~~F~~ 620 (1018)
++-+ .+| +.-.||-|.. -|.. ++ --.||.. .|-...=.-..|-+++-.+...
T Consensus 488 ylVMRHG~~~~~~~~d~q~s~~~~i~~~qLGCYFCnDV~AP~nSl~DRTLDQqCTVt-RPG~a~IA~alAVELlvslLQh 566 (669)
T KOG2337|consen 488 YLVMRHGTGRKEASDDGQSSDLKCINGDQLGCYFCNDVVAPGNSLTDRTLDQQCTVT-RPGVANIASALAVELLVSLLQH 566 (669)
T ss_pred eEEEecCCCCcccccccccccccccCcccceeEeEcceecCCCcccccchhheeecc-CCchhHHHHHHHHHHHHHHHhC
Confidence 2110 112 2456888852 1322 11 2357754 3554444445666666554433
No 102
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=99.10 E-value=2.5e-10 Score=128.86 Aligned_cols=138 Identities=17% Similarity=0.256 Sum_probs=116.4
Q ss_pred HHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCcc---CchHHHHHHHHHHhhCCCc
Q 001747 27 TMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDI---GKNRALASVQKLQELNNAV 103 (1018)
Q Consensus 27 ~q~~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~di---Gk~ka~a~~~~L~elNp~V 103 (1018)
...++++.++|++|+|.+||.||+||+--||++||++|...|+.+|--||-+++-+|. |++||++++++|++++|.+
T Consensus 334 nLd~is~~KcLLLGAGTLGC~VAR~Ll~WGvRhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rLk~IfP~m 413 (669)
T KOG2337|consen 334 NLDIISQTKCLLLGAGTLGCNVARNLLGWGVRHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRLKEIFPSM 413 (669)
T ss_pred chhhhhcceeEEecCcccchHHHHHHHhhccceEEEEecCeeeccchhhhhhhhhhhhhccCCcchHHHHHHHHHhCccc
Confidence 4578999999999999999999999999999999999999999999999999998887 5999999999999999988
Q ss_pred EEEEEecCC-------C--------------hhhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEEeeecceeEEEE
Q 001747 104 VLSTLTSKL-------T--------------KEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVF 162 (1018)
Q Consensus 104 ~v~~~~~~l-------~--------------~~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~~~~~G~~G~vf 162 (1018)
.-+.+...+ . ++.++..|+|++..|+.+.|-.-.-+|-.++ +++.-...|+-.|+.
T Consensus 414 ~atG~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~HDviFLLtDsRESRWLPtll~a~~~---KivINaALGFDsylV 490 (669)
T KOG2337|consen 414 EATGYVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKDHDVIFLLTDSRESRWLPTLLAAAKN---KIVINAALGFDSYLV 490 (669)
T ss_pred cccceEEeccCCCCccchhhHHHHHHHHHHHHHHHhhcceEEEEeccchhhhhHHHHHhhhc---ceEeeeecccceeEE
Confidence 766654332 1 1357889999999999888876666777776 345556788888887
Q ss_pred eecCC
Q 001747 163 CDFGP 167 (1018)
Q Consensus 163 ~d~g~ 167 (1018)
.-.|.
T Consensus 491 MRHG~ 495 (669)
T KOG2337|consen 491 MRHGT 495 (669)
T ss_pred EecCC
Confidence 76664
No 103
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=99.07 E-value=7e-10 Score=130.52 Aligned_cols=136 Identities=16% Similarity=0.180 Sum_probs=110.1
Q ss_pred CCchhhhhhhhhhhcc------CHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCc
Q 001747 8 QTDIDEDLHSRQLAVY------GRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSD 81 (1018)
Q Consensus 8 ~~~~~~~~YdRQi~l~------G~~~q~~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~ 81 (1018)
.++...+||..||..+ |...-++.++++|+|+|+||+|+.++.+|+.+|++.|..+|.|.+ .+|++|
T Consensus 98 L~~a~lERYaaqI~F~~~fs~s~~~rF~~qR~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v-~SNlnR------ 170 (637)
T TIGR03693 98 LESALLDRYAAQIEFIEADADSGALKFELSRNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAE-EHALDR------ 170 (637)
T ss_pred CCHHHHHHHHHHHHHHHHhccCchhhhhhhhcccEEEEecCchHHHHHHHHHhcCCCcEEEEecccc-chhhhH------
Confidence 4555679999999984 566777889999999999999999999999999999999999999 999998
Q ss_pred CccCchHHHHHHHHHHhhCCCcEEEEEecCCCh---hhccCCceEEEccc--CHHHHHHHHHHHHhcCCCceeEEeeecc
Q 001747 82 NDIGKNRALASVQKLQELNNAVVLSTLTSKLTK---EQLSDFQAVVFTDI--SLDKAIEFDDFCHNHQPAISFIKAEVRG 156 (1018)
Q Consensus 82 ~diGk~ka~a~~~~L~elNp~V~v~~~~~~l~~---~~~~~~dvVI~~~~--~~~~~~~ln~~c~~~~~~i~fi~~~~~G 156 (1018)
||.. ++.+++ .||.|.|+.+....++ +.++.+|+||+..+ ......++|+.|.+.| .|||-+-..|
T Consensus 171 --IgEl-~e~A~~----~n~~v~v~~i~~~~~~dl~ev~~~~DiVi~vsDdy~~~~Lr~lN~acvkeg--k~~IPai~~G 241 (637)
T TIGR03693 171 --IHEL-AEIAEE----TDDALLVQEIDFAEDQHLHEAFEPADWVLYVSDNGDIDDLHALHAFCKEEG--KGFIPAICLK 241 (637)
T ss_pred --HHHH-HHHHHH----hCCCCceEeccCCcchhHHHhhcCCcEEEEECCCCChHHHHHHHHHHHHcC--CCeEEEEEcc
Confidence 6765 554444 8999999998753332 46899999998877 4567889999999998 5555544444
Q ss_pred eeE
Q 001747 157 LFG 159 (1018)
Q Consensus 157 ~~G 159 (1018)
..+
T Consensus 242 ~~~ 244 (637)
T TIGR03693 242 QVG 244 (637)
T ss_pred cce
Confidence 433
No 104
>PF02134 UBACT: Repeat in ubiquitin-activating (UBA) protein; InterPro: IPR000127 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme is responsible for activating ubiquitin, the first step in ubiquitinylation. The E1 enzyme hydrolyses ATP and adenylates the C-terminal glycine residue of ubiquitin, and then links this residue to the active site cysteine of E1, yielding a ubiquitin-thioester and free AMP. To be fully active, E1 must non-covalently bind to and adenylate a second ubiquitin molecule. The E1 enzyme can then transfer the thioester-linked ubiquitin molecule to a cysteine residue on the ubiquitin-conjugating enzyme, E2, in an ATP-dependent reaction. This domain is found 2 times in each member of the ubiquitin activating enzymes and is located downstream of the active site cysteine [].; GO: 0005524 ATP binding, 0008641 small protein activating enzyme activity, 0006464 protein modification process; PDB: 1Z7L_A 3CMM_A 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H ....
Probab=98.13 E-value=1.1e-06 Score=75.81 Aligned_cols=50 Identities=38% Similarity=0.751 Sum_probs=36.6
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHcCCCCCCCCCChHHHHHHhhhcCCCCcCCCCC
Q 001747 716 QFSSADPSHLHFVMAASILRAETFGIPIPDWTNNPKMLAEAVDKVMVPDFLPKKD 770 (1018)
Q Consensus 716 ~fd~~n~~h~~fi~~~a~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 770 (1018)
+||.+|+.|++||+++|+|||++|||+ + .+...+++++ +..+|.|.|+.+
T Consensus 1 ~Fd~dd~~h~~fI~a~anLrA~~f~I~-~---~~~~~~~~i~-~~iIP~~~~t~~ 50 (67)
T PF02134_consen 1 EFDKDDPLHLDFIYAAANLRAQNFGIP-P---LDREEIKKIA-GNIIPAFAPTNA 50 (67)
T ss_dssp ---TTSHHHHHHHHHHHHHHHHHTT-------S-HHHHHHHH-TTEE-B-HHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHhCCC-c---ccHHHHHHHh-cCcCCCcCCchh
Confidence 599999999999999999999999999 4 4678888888 778999987653
No 105
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=97.80 E-value=9.4e-05 Score=72.87 Aligned_cols=121 Identities=18% Similarity=0.280 Sum_probs=96.2
Q ss_pred cCeEEEEcCChHHHHHHHHHH---HhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEe
Q 001747 33 ASNILVSGMQGLGAEIAKNLI---LAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 109 (1018)
Q Consensus 33 ~s~VlIiG~gglG~eiaKnLv---laGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~ 109 (1018)
.-.|.++|||-+|.-++-+|. +.|+.+|.++|+..|++.|+-- ..--.-+|.+|++- .++|..-.+.-.|++..
T Consensus 18 rGeV~l~G~GRLG~Rval~Lle~HRGGperi~v~Dgqrve~dDiih--rr~Ga~~GEyKv~F-i~rl~~~~f~r~V~a~p 94 (217)
T COG4015 18 RGEVSLIGCGRLGVRVALDLLEVHRGGPERIYVFDGQRVEEDDIIH--RRLGAKVGEYKVDF-IKRLGRVHFGRRVEAFP 94 (217)
T ss_pred CceEEEEeccchhHHHHHHHHHHhcCCCeEEEEecCcccCchhhHH--HHhCCCcchhHHHH-HHHhCcCCCCceeeccc
Confidence 346999999999999999987 6799999999999999999852 22223579999875 45677778888999999
Q ss_pred cCCChhhcc--CCceEEEcc---cCHHHHHHHHHHHHhcCCCceeEEeeecceeEE
Q 001747 110 SKLTKEQLS--DFQAVVFTD---ISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGS 160 (1018)
Q Consensus 110 ~~l~~~~~~--~~dvVI~~~---~~~~~~~~ln~~c~~~~~~i~fi~~~~~G~~G~ 160 (1018)
+.+++++++ .-||||.|. +..+.-..|-++|++.| +.-| ++.|.||+
T Consensus 95 E~it~dNlhll~gDVvvi~IAGGdT~PvTaaii~ya~~rG--~~Ti--sT~GVFGi 146 (217)
T COG4015 95 ENITKDNLHLLKGDVVVICIAGGDTIPVTAAIINYAKERG--IKTI--STNGVFGI 146 (217)
T ss_pred ccccccchhhhcCCEEEEEecCCCcchhHHHHHHHHHHcC--ceEe--ecCceeec
Confidence 999887654 238887764 36677778889999999 7655 67888885
No 106
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=97.56 E-value=7e-05 Score=67.48 Aligned_cols=63 Identities=25% Similarity=0.319 Sum_probs=50.2
Q ss_pred EEeCCCCcHHHHHHHHHHc---CCceeeeecCCceeecCCCc----chhccccCcHHHHHHH-----hhccCCCC
Q 001747 927 WILKDNPTLRELIQWLKDK---GLNAYSISCGSCLLFNSMFP----RHKERMDKKVVDLARE-----VAKVELPP 989 (1018)
Q Consensus 927 ~~~~~~~Tl~~li~~~~~~---~~~~~~i~~g~~~lY~~~~~----~~~~~l~~~l~~l~~~-----~~~~~l~~ 989 (1018)
++++.+.||++||+.+.++ ++..++|+.+++-||....| ..+.||+|+|.||+.. |+++.+|.
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL~~~g~ei~VtD~~lp~ 75 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKELLSDGEEITVTDPTLPI 75 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTTHHSSEEEEEEETTESS
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHHhcCCCEEEEECCCCce
Confidence 3567789999999999998 88899999999999998865 4579999999999765 56665553
No 107
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.49 E-value=0.0014 Score=69.52 Aligned_cols=95 Identities=11% Similarity=0.064 Sum_probs=70.2
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEe
Q 001747 30 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 109 (1018)
Q Consensus 30 ~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~ 109 (1018)
.|++.+|+|||.|.+|...++.|..+| .++++++++.. +.+.++.+.-.+....
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs~~~~-------------------------~~l~~l~~~~~i~~~~ 60 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYG-AHIVVISPELT-------------------------ENLVKLVEEGKIRWKQ 60 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEcCCCC-------------------------HHHHHHHhCCCEEEEe
Confidence 478999999999999999999999999 69999975311 1122222223355555
Q ss_pred cCCChhhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEEee
Q 001747 110 SKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAE 153 (1018)
Q Consensus 110 ~~l~~~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~~~ 153 (1018)
..+.+..+.++|+||+++.+.+....+.+.|+ .+ +++-.++
T Consensus 61 ~~~~~~~l~~adlViaaT~d~elN~~i~~~a~-~~--~lvn~~d 101 (202)
T PRK06718 61 KEFEPSDIVDAFLVIAATNDPRVNEQVKEDLP-EN--ALFNVIT 101 (202)
T ss_pred cCCChhhcCCceEEEEcCCCHHHHHHHHHHHH-hC--CcEEECC
Confidence 66677788999999999998888888999994 46 5544443
No 108
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=97.44 E-value=0.00014 Score=76.44 Aligned_cols=59 Identities=20% Similarity=0.272 Sum_probs=48.2
Q ss_pred HHHHHHHhcCcEEEEccCcchHH-HHHHHHhcCcccC-CCccEEEe---cCCcccccccCcccC
Q 001747 422 AKLQKKLEDAKVFIVGSGALGCE-FLKNVALMGVSCG-NQGKLTIT---DDDVIEKSNLSRQFL 480 (1018)
Q Consensus 422 ~~~q~~l~~~~v~vvG~GgiG~e-~lk~La~~Gv~~~-~~g~i~iv---D~D~Ie~sNLnRqfl 480 (1018)
...++++++.+|.|+|.|+.|++ ++..|+.+|++.. ....++|| |++..+++|+|||++
T Consensus 97 ~~a~~~l~~~~V~V~~~G~~~~~~l~~aLaa~Gv~~~~~~a~l~vVl~~Dyl~p~L~~~n~~~l 160 (193)
T TIGR03882 97 AAALERLRQLTVTVLSFGEGGAAALAAALAAAGIRIAPSEADLTVVLTDDYLDPELAAINQRAL 160 (193)
T ss_pred HHHHHHHhcCcEEEEecCCCcHHHHHHHHHHcCCCccCCCCCEEEEEeCCCCChHHHHHHHHHH
Confidence 45789999999999999999999 9999999999543 33445777 778888888887765
No 109
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.37 E-value=0.0027 Score=67.48 Aligned_cols=103 Identities=15% Similarity=0.092 Sum_probs=78.3
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEec
Q 001747 31 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 110 (1018)
Q Consensus 31 L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~~ 110 (1018)
|++.+|+|+|.|.+|..-++.|...|. .+|+++++.- +.+.++-..-.|..+..
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~~-------------------------~~l~~l~~~~~i~~~~~ 60 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEELE-------------------------SELTLLAEQGGITWLAR 60 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCCC-------------------------HHHHHHHHcCCEEEEeC
Confidence 778999999999999999999999996 8999987432 01112211225677777
Q ss_pred CCChhhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEEeeecceeEEE
Q 001747 111 KLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSV 161 (1018)
Q Consensus 111 ~l~~~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~~~~~G~~G~v 161 (1018)
...++.+.++++||.++++.+....+-..|++.+ +++-.++--....++
T Consensus 61 ~~~~~dl~~~~lVi~at~d~~ln~~i~~~a~~~~--ilvn~~d~~e~~~f~ 109 (205)
T TIGR01470 61 CFDADILEGAFLVIAATDDEELNRRVAHAARARG--VPVNVVDDPELCSFI 109 (205)
T ss_pred CCCHHHhCCcEEEEECCCCHHHHHHHHHHHHHcC--CEEEECCCcccCeEE
Confidence 7777788999999999988777889999999999 877666554443333
No 110
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.22 E-value=0.00093 Score=66.18 Aligned_cols=77 Identities=23% Similarity=0.300 Sum_probs=57.8
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEe
Q 001747 30 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 109 (1018)
Q Consensus 30 ~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~ 109 (1018)
.+++++|+|+|+||.|..+++.|...|+++|+|+..+ ..||+.+++.+ +...+....
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt-------------------~~ra~~l~~~~----~~~~~~~~~ 65 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT-------------------PERAEALAEEF----GGVNIEAIP 65 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS-------------------HHHHHHHHHHH----TGCSEEEEE
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC-------------------HHHHHHHHHHc----Cccccceee
Confidence 6899999999999999999999999999999998742 23777766666 444454443
Q ss_pred cCCChhhccCCceEEEcccC
Q 001747 110 SKLTKEQLSDFQAVVFTDIS 129 (1018)
Q Consensus 110 ~~l~~~~~~~~dvVI~~~~~ 129 (1018)
-.=-.+.+.++|+||.|+..
T Consensus 66 ~~~~~~~~~~~DivI~aT~~ 85 (135)
T PF01488_consen 66 LEDLEEALQEADIVINATPS 85 (135)
T ss_dssp GGGHCHHHHTESEEEE-SST
T ss_pred HHHHHHHHhhCCeEEEecCC
Confidence 22122467899999998763
No 111
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.15 E-value=0.00084 Score=77.26 Aligned_cols=100 Identities=20% Similarity=0.305 Sum_probs=70.5
Q ss_pred CcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCCeEEEE
Q 001747 431 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEAL 510 (1018)
Q Consensus 431 ~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~~i~~~ 510 (1018)
.+|+|+|||++|+.++.+||+.|. ++|++.|... .| ++++...... ++++.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d-----~~V~iAdRs~-------------------~~----~~~i~~~~~~-~v~~~ 52 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGD-----GEVTIADRSK-------------------EK----CARIAELIGG-KVEAL 52 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCC-----ceEEEEeCCH-------------------HH----HHHHHhhccc-cceeE
Confidence 589999999999999999999998 8999997321 12 2222222211 56666
Q ss_pred ecccCCccccccccccccCccEEEEcccChhHHHHHHhhccccccceEecccC
Q 001747 511 QNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTL 563 (1018)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~~~pli~~g~~ 563 (1018)
.-.+.... .+ .+.++++|+||+|+.-.-.+ -+-+.|.+.++++++....
T Consensus 53 ~vD~~d~~-al--~~li~~~d~VIn~~p~~~~~-~i~ka~i~~gv~yvDts~~ 101 (389)
T COG1748 53 QVDAADVD-AL--VALIKDFDLVINAAPPFVDL-TILKACIKTGVDYVDTSYY 101 (389)
T ss_pred EecccChH-HH--HHHHhcCCEEEEeCCchhhH-HHHHHHHHhCCCEEEcccC
Confidence 55544321 11 35678889999999877777 5666899999999975543
No 112
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.10 E-value=0.0013 Score=73.59 Aligned_cols=77 Identities=21% Similarity=0.272 Sum_probs=59.5
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCCe
Q 001747 427 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 506 (1018)
Q Consensus 427 ~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~~ 506 (1018)
.+..++|+|+|+||.|..++..|+.+|+ ++|+|+|.+ ..|++.+++.+....|.+.
T Consensus 124 ~~~~k~vlIlGaGGaaraia~aL~~~G~-----~~I~I~nR~-------------------~~ka~~la~~l~~~~~~~~ 179 (284)
T PRK12549 124 DASLERVVQLGAGGAGAAVAHALLTLGV-----ERLTIFDVD-------------------PARAAALADELNARFPAAR 179 (284)
T ss_pred CccCCEEEEECCcHHHHHHHHHHHHcCC-----CEEEEECCC-------------------HHHHHHHHHHHHhhCCCeE
Confidence 3567899999999999999999999999 899999866 2588889988887777654
Q ss_pred EEEEecccCCccccccccccccCccEEEEcc
Q 001747 507 IEALQNRVGPETENVFDDTFWENITCVINAL 537 (1018)
Q Consensus 507 i~~~~~~~~~~~~~~~~~~~~~~~dvVi~al 537 (1018)
+..... + .+...++|+||+|+
T Consensus 180 ~~~~~~-~---------~~~~~~aDiVInaT 200 (284)
T PRK12549 180 ATAGSD-L---------AAALAAADGLVHAT 200 (284)
T ss_pred EEeccc-h---------HhhhCCCCEEEECC
Confidence 433210 0 12346799999996
No 113
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.06 E-value=0.011 Score=60.27 Aligned_cols=86 Identities=14% Similarity=0.184 Sum_probs=67.4
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEe
Q 001747 30 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 109 (1018)
Q Consensus 30 ~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~ 109 (1018)
.|++.+|+|+|.|.+|...++.|...|. .+++++++..+ .+.++. .+....
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIsp~~~~-------------------------~l~~l~---~i~~~~ 60 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVSPEICK-------------------------EMKELP---YITWKQ 60 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCccCH-------------------------HHHhcc---CcEEEe
Confidence 5789999999999999999999999997 89998754321 122221 244556
Q ss_pred cCCChhhccCCceEEEcccCHHHHHHHHHHHHhcC
Q 001747 110 SKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQ 144 (1018)
Q Consensus 110 ~~l~~~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~ 144 (1018)
..+.++.+.++|+||+++++.+....+...|++++
T Consensus 61 ~~~~~~dl~~a~lViaaT~d~e~N~~i~~~a~~~~ 95 (157)
T PRK06719 61 KTFSNDDIKDAHLIYAATNQHAVNMMVKQAAHDFQ 95 (157)
T ss_pred cccChhcCCCceEEEECCCCHHHHHHHHHHHHHCC
Confidence 66777889999999999998888888889998743
No 114
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=96.97 E-value=0.0023 Score=63.34 Aligned_cols=126 Identities=13% Similarity=0.206 Sum_probs=93.3
Q ss_pred cCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCCeEEE
Q 001747 430 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEA 509 (1018)
Q Consensus 430 ~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~~i~~ 509 (1018)
...|.++|||-+|--++-+|... +.|.-.+|.++|...||..++-.--+ -.-+|.+|++-+++ +-+-.+.-+|++
T Consensus 18 rGeV~l~G~GRLG~Rval~Lle~--HRGGperi~v~Dgqrve~dDiihrr~--Ga~~GEyKv~Fi~r-l~~~~f~r~V~a 92 (217)
T COG4015 18 RGEVSLIGCGRLGVRVALDLLEV--HRGGPERIYVFDGQRVEEDDIIHRRL--GAKVGEYKVDFIKR-LGRVHFGRRVEA 92 (217)
T ss_pred CceEEEEeccchhHHHHHHHHHH--hcCCCeEEEEecCcccCchhhHHHHh--CCCcchhHHHHHHH-hCcCCCCceeec
Confidence 34699999999999999888743 22222899999999999999742222 23689999998664 444456678999
Q ss_pred EecccCCccccccccccccCccEEEEcc---cChhHHHHHHhhccccccceEecccCCcccc
Q 001747 510 LQNRVGPETENVFDDTFWENITCVINAL---DNVNARLYVDQRCLYFQKPLLESGTLGAKCN 568 (1018)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~dvVi~al---Dn~~ar~~v~~~c~~~~~pli~~g~~g~~g~ 568 (1018)
+.+.++.++.+++ .. |+|+.|+ |+...-..+-..|++.+..-| +|.|..|.
T Consensus 93 ~pE~it~dNlhll-----~g-DVvvi~IAGGdT~PvTaaii~ya~~rG~~Ti--sT~GVFGi 146 (217)
T COG4015 93 FPENITKDNLHLL-----KG-DVVVICIAGGDTIPVTAAIINYAKERGIKTI--STNGVFGI 146 (217)
T ss_pred ccccccccchhhh-----cC-CEEEEEecCCCcchhHHHHHHHHHHcCceEe--ecCceeec
Confidence 9999998876654 22 8777665 677777788889999998877 45555544
No 115
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.96 E-value=0.0017 Score=64.29 Aligned_cols=79 Identities=23% Similarity=0.367 Sum_probs=56.5
Q ss_pred HHHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCC
Q 001747 426 KKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRL 505 (1018)
Q Consensus 426 ~~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~ 505 (1018)
..+.+++++|+|+||.|..+++.|+..|+ .+|+|+. |. ..|++.+++.+ +..
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~-----~~i~i~n----------Rt---------~~ra~~l~~~~----~~~ 59 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGA-----KEITIVN----------RT---------PERAEALAEEF----GGV 59 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTS-----SEEEEEE----------SS---------HHHHHHHHHHH----TGC
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCC-----CEEEEEE----------CC---------HHHHHHHHHHc----Ccc
Confidence 36899999999999999999999999999 8899985 32 24666666666 444
Q ss_pred eEEEEecccCCccccccccccccCccEEEEcccCh
Q 001747 506 NIEALQNRVGPETENVFDDTFWENITCVINALDNV 540 (1018)
Q Consensus 506 ~i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~ 540 (1018)
.+...... .+ .+.+.++|+||+|+.-.
T Consensus 60 ~~~~~~~~------~~--~~~~~~~DivI~aT~~~ 86 (135)
T PF01488_consen 60 NIEAIPLE------DL--EEALQEADIVINATPSG 86 (135)
T ss_dssp SEEEEEGG------GH--CHHHHTESEEEE-SSTT
T ss_pred ccceeeHH------HH--HHHHhhCCeEEEecCCC
Confidence 44444321 11 13467899999998543
No 116
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=96.96 E-value=0.0027 Score=70.95 Aligned_cols=76 Identities=24% Similarity=0.286 Sum_probs=59.9
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEec
Q 001747 31 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 110 (1018)
Q Consensus 31 L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~~ 110 (1018)
+..++|+|+|+||+|..++..|+..|+++|+|+|.+ ..|++++++.+.+..+.+.+....
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~-------------------~~ka~~la~~l~~~~~~~~~~~~~- 184 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD-------------------PARAAALADELNARFPAARATAGS- 184 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC-------------------HHHHHHHHHHHHhhCCCeEEEecc-
Confidence 566799999999999999999999999999999864 258999999998877765553322
Q ss_pred CCChhhccCCceEEEcc
Q 001747 111 KLTKEQLSDFQAVVFTD 127 (1018)
Q Consensus 111 ~l~~~~~~~~dvVI~~~ 127 (1018)
.+ .+.+.++|+||.|+
T Consensus 185 ~~-~~~~~~aDiVInaT 200 (284)
T PRK12549 185 DL-AAALAAADGLVHAT 200 (284)
T ss_pred ch-HhhhCCCCEEEECC
Confidence 11 23456789988876
No 117
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.96 E-value=0.0031 Score=66.89 Aligned_cols=92 Identities=15% Similarity=0.161 Sum_probs=64.4
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCCe
Q 001747 427 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 506 (1018)
Q Consensus 427 ~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~~ 506 (1018)
.|.+++|+|||+|.+|...++.|...|. +|+|++.+. . +.+.++.+.-.
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~ga------~V~VIs~~~------~-------------------~~l~~l~~~~~ 55 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYGA------HIVVISPEL------T-------------------ENLVKLVEEGK 55 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCC------eEEEEcCCC------C-------------------HHHHHHHhCCC
Confidence 4788999999999999999999999996 899986431 1 01111111122
Q ss_pred EEEEecccCCccccccccccccCccEEEEcccChhHHHHHHhhccccccceE
Q 001747 507 IEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLL 558 (1018)
Q Consensus 507 i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~~~pli 558 (1018)
+...... |....+..+|+||.|+|+.+.-..+...| ..++++-
T Consensus 56 i~~~~~~--------~~~~~l~~adlViaaT~d~elN~~i~~~a-~~~~lvn 98 (202)
T PRK06718 56 IRWKQKE--------FEPSDIVDAFLVIAATNDPRVNEQVKEDL-PENALFN 98 (202)
T ss_pred EEEEecC--------CChhhcCCceEEEEcCCCHHHHHHHHHHH-HhCCcEE
Confidence 3332221 22445688999999999999999999999 4466543
No 118
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=96.95 E-value=0.0033 Score=72.47 Aligned_cols=98 Identities=19% Similarity=0.283 Sum_probs=70.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEecCCC
Q 001747 34 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLT 113 (1018)
Q Consensus 34 s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~~~l~ 113 (1018)
.+|+|+|+|++|+-+|.+|+..|.+.|+|.|.. ...+.++.+.... ++++..-++.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs-----------------------~~~~~~i~~~~~~-~v~~~~vD~~ 57 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS-----------------------KEKCARIAELIGG-KVEALQVDAA 57 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCC-----------------------HHHHHHHHhhccc-cceeEEeccc
Confidence 589999999999999999999999999999842 2223344333322 4554443332
Q ss_pred -----hhhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEEeeeccee
Q 001747 114 -----KEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLF 158 (1018)
Q Consensus 114 -----~~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~~~~~G~~ 158 (1018)
.+.++++|+||.+....-.. .+-+.|-+.+ +.++.+..+.-.
T Consensus 58 d~~al~~li~~~d~VIn~~p~~~~~-~i~ka~i~~g--v~yvDts~~~~~ 104 (389)
T COG1748 58 DVDALVALIKDFDLVINAAPPFVDL-TILKACIKTG--VDYVDTSYYEEP 104 (389)
T ss_pred ChHHHHHHHhcCCEEEEeCCchhhH-HHHHHHHHhC--CCEEEcccCCch
Confidence 25788999999988655444 7888999999 988876654443
No 119
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.82 E-value=0.0024 Score=60.18 Aligned_cols=89 Identities=18% Similarity=0.144 Sum_probs=65.0
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEe
Q 001747 30 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 109 (1018)
Q Consensus 30 ~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~ 109 (1018)
.|++.+|+|+|.|.+|..=++.|..+| .++|++.++. .. .. ..++ ...
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~g-A~v~vis~~~-~~-------------------------~~---~~i~--~~~ 51 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAG-AKVTVISPEI-EF-------------------------SE---GLIQ--LIR 51 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCT-BEEEEEESSE-HH-------------------------HH---TSCE--EEE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEECCch-hh-------------------------hh---hHHH--HHh
Confidence 478999999999999999999999999 5999998765 00 00 2222 334
Q ss_pred cCCChhhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEEee
Q 001747 110 SKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAE 153 (1018)
Q Consensus 110 ~~l~~~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~~~ 153 (1018)
..+. +.+.++++|++++++......+-+.|++++ +|+-.++
T Consensus 52 ~~~~-~~l~~~~lV~~at~d~~~n~~i~~~a~~~~--i~vn~~D 92 (103)
T PF13241_consen 52 REFE-EDLDGADLVFAATDDPELNEAIYADARARG--ILVNVVD 92 (103)
T ss_dssp SS-G-GGCTTESEEEE-SS-HHHHHHHHHHHHHTT--SEEEETT
T ss_pred hhHH-HHHhhheEEEecCCCHHHHHHHHHHHhhCC--EEEEECC
Confidence 4444 568899999999999888899999999999 7766544
No 120
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=96.80 E-value=0.023 Score=60.93 Aligned_cols=99 Identities=13% Similarity=0.107 Sum_probs=76.2
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEe
Q 001747 30 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 109 (1018)
Q Consensus 30 ~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~ 109 (1018)
.+++.+|+|||.|.+|..=++.|..+|. +||++-++... .+.++-..-.++.+.
T Consensus 22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~gA-~VtVVap~i~~-------------------------el~~l~~~~~i~~~~ 75 (223)
T PRK05562 22 LSNKIKVLIIGGGKAAFIKGKTFLKKGC-YVYILSKKFSK-------------------------EFLDLKKYGNLKLIK 75 (223)
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCCCH-------------------------HHHHHHhCCCEEEEe
Confidence 4568899999999999999999999995 79998765321 111221122466677
Q ss_pred cCCChhhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEEeeecc
Q 001747 110 SKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRG 156 (1018)
Q Consensus 110 ~~l~~~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~~~~~G 156 (1018)
....++.+.++++||+|+++.+....+.+.|++.+ +++..++.-.
T Consensus 76 r~~~~~dl~g~~LViaATdD~~vN~~I~~~a~~~~--~lvn~vd~p~ 120 (223)
T PRK05562 76 GNYDKEFIKDKHLIVIATDDEKLNNKIRKHCDRLY--KLYIDCSDYK 120 (223)
T ss_pred CCCChHHhCCCcEEEECCCCHHHHHHHHHHHHHcC--CeEEEcCCcc
Confidence 77888889999999999999999999999999998 7766654433
No 121
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.72 E-value=0.0031 Score=59.40 Aligned_cols=87 Identities=15% Similarity=0.180 Sum_probs=63.3
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCCe
Q 001747 427 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 506 (1018)
Q Consensus 427 ~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~~ 506 (1018)
.|++++|+|||.|.+|..=++.|..+|. +++|+..+. +... ..++
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA------~v~vis~~~-~~~~----------------------------~~i~ 48 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGA------KVTVISPEI-EFSE----------------------------GLIQ 48 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTB------EEEEEESSE-HHHH----------------------------TSCE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEECCch-hhhh----------------------------hHHH
Confidence 4789999999999999999999999997 999998775 1000 1122
Q ss_pred EEEEecccCCccccccccccccCccEEEEcccChhHHHHHHhhccccccceEe
Q 001747 507 IEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLE 559 (1018)
Q Consensus 507 i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~~~pli~ 559 (1018)
.....+ . +.++++++|+.|+|+.+....+-+.|+..++|+-.
T Consensus 49 --~~~~~~--------~-~~l~~~~lV~~at~d~~~n~~i~~~a~~~~i~vn~ 90 (103)
T PF13241_consen 49 --LIRREF--------E-EDLDGADLVFAATDDPELNEAIYADARARGILVNV 90 (103)
T ss_dssp --EEESS---------G-GGCTTESEEEE-SS-HHHHHHHHHHHHHTTSEEEE
T ss_pred --HHhhhH--------H-HHHhhheEEEecCCCHHHHHHHHHHHhhCCEEEEE
Confidence 222222 1 33678999999999999999999999999998764
No 122
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.58 E-value=0.012 Score=59.78 Aligned_cols=85 Identities=18% Similarity=0.281 Sum_probs=62.4
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCCe
Q 001747 427 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 506 (1018)
Q Consensus 427 ~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~~ 506 (1018)
.|.+++|+|||.|.+|...++.|...|. +++||+.+..+ .+.++ +.
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga------~V~VIsp~~~~-------------------------~l~~l-~~-- 55 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGA------FVTVVSPEICK-------------------------EMKEL-PY-- 55 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEEcCccCH-------------------------HHHhc-cC--
Confidence 5788999999999999999999999997 99999765321 01111 11
Q ss_pred EEEEecccCCccccccccccccCccEEEEcccChhHHHHHHhhcccc
Q 001747 507 IEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYF 553 (1018)
Q Consensus 507 i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~ 553 (1018)
++.... .|.+..+.++|+||.|+|+.+.-..+...|...
T Consensus 56 i~~~~~--------~~~~~dl~~a~lViaaT~d~e~N~~i~~~a~~~ 94 (157)
T PRK06719 56 ITWKQK--------TFSNDDIKDAHLIYAATNQHAVNMMVKQAAHDF 94 (157)
T ss_pred cEEEec--------ccChhcCCCceEEEECCCCHHHHHHHHHHHHHC
Confidence 222222 233445688999999999999999898888764
No 123
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.50 E-value=0.0093 Score=63.45 Aligned_cols=95 Identities=18% Similarity=0.178 Sum_probs=70.6
Q ss_pred HhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCCeE
Q 001747 428 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNI 507 (1018)
Q Consensus 428 l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~~i 507 (1018)
|.+++|+|||.|.+|..-++.|...|. +++|++.+.- +. +.+ +.+ .-+|
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga------~VtVvsp~~~------------------~~---l~~-l~~---~~~i 55 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGA------QLRVIAEELE------------------SE---LTL-LAE---QGGI 55 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCC------EEEEEcCCCC------------------HH---HHH-HHH---cCCE
Confidence 678899999999999999999999997 9999987521 00 111 111 1245
Q ss_pred EEEecccCCccccccccccccCccEEEEcccChhHHHHHHhhccccccceEecc
Q 001747 508 EALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESG 561 (1018)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~~~pli~~g 561 (1018)
+.+...+. ...+.++++||.|+|+.+....+-..|...++|+-.++
T Consensus 56 ~~~~~~~~--------~~dl~~~~lVi~at~d~~ln~~i~~~a~~~~ilvn~~d 101 (205)
T TIGR01470 56 TWLARCFD--------ADILEGAFLVIAATDDEELNRRVAHAARARGVPVNVVD 101 (205)
T ss_pred EEEeCCCC--------HHHhCCcEEEEECCCCHHHHHHHHHHHHHcCCEEEECC
Confidence 55554333 23467899999999999888999999999999985433
No 124
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=96.03 E-value=0.02 Score=61.46 Aligned_cols=96 Identities=15% Similarity=0.159 Sum_probs=70.8
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCCe
Q 001747 427 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 506 (1018)
Q Consensus 427 ~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~~ 506 (1018)
.+++++|+|||.|.+|..=++.|...|. +|+||-++.- + ....++ ..+ +
T Consensus 22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~gA------~VtVVap~i~------------~------el~~l~-----~~~--~ 70 (223)
T PRK05562 22 LSNKIKVLIIGGGKAAFIKGKTFLKKGC------YVYILSKKFS------------K------EFLDLK-----KYG--N 70 (223)
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEEcCCCC------------H------HHHHHH-----hCC--C
Confidence 4668899999999999999999999997 9999976521 0 000011 122 3
Q ss_pred EEEEecccCCccccccccccccCccEEEEcccChhHHHHHHhhccccccceEecc
Q 001747 507 IEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESG 561 (1018)
Q Consensus 507 i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~~~pli~~g 561 (1018)
|+.+...+. +..+.++++||.|+|+.+.-..+...|...++++..+.
T Consensus 71 i~~~~r~~~--------~~dl~g~~LViaATdD~~vN~~I~~~a~~~~~lvn~vd 117 (223)
T PRK05562 71 LKLIKGNYD--------KEFIKDKHLIVIATDDEKLNNKIRKHCDRLYKLYIDCS 117 (223)
T ss_pred EEEEeCCCC--------hHHhCCCcEEEECCCCHHHHHHHHHHHHHcCCeEEEcC
Confidence 555544433 34567899999999999999999999999998877543
No 125
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.02 E-value=0.01 Score=69.29 Aligned_cols=97 Identities=19% Similarity=0.248 Sum_probs=64.8
Q ss_pred EEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCCeEEEEec
Q 001747 433 VFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQN 512 (1018)
Q Consensus 433 v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~~i~~~~~ 512 (1018)
|+|+|+|.+|..+++.|++.+-. .++++.|.+.= |++.+++.+ ...++.....
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~----~~v~va~r~~~-------------------~~~~~~~~~----~~~~~~~~~~ 53 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPF----EEVTVADRNPE-------------------KAERLAEKL----LGDRVEAVQV 53 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-----EEEEEESSHH-------------------HHHHHHT------TTTTEEEEE-
T ss_pred CEEEcCcHHHHHHHHHHhcCCCC----CcEEEEECCHH-------------------HHHHHHhhc----cccceeEEEE
Confidence 78999999999999999999841 38898875432 333333322 3346666666
Q ss_pred ccCCccccccccccccCccEEEEcccChhHHHHHHhhccccccceEec
Q 001747 513 RVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLES 560 (1018)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~~~pli~~ 560 (1018)
.+....+ + .++++++|+||+|+... ....+-+.|.+.++++|+.
T Consensus 54 d~~~~~~-l--~~~~~~~dvVin~~gp~-~~~~v~~~~i~~g~~yvD~ 97 (386)
T PF03435_consen 54 DVNDPES-L--AELLRGCDVVINCAGPF-FGEPVARACIEAGVHYVDT 97 (386)
T ss_dssp -TTTHHH-H--HHHHTTSSEEEE-SSGG-GHHHHHHHHHHHT-EEEES
T ss_pred ecCCHHH-H--HHHHhcCCEEEECCccc-hhHHHHHHHHHhCCCeecc
Confidence 6654322 2 46789999999999877 5557888999999999993
No 126
>PRK10637 cysG siroheme synthase; Provisional
Probab=95.69 E-value=0.13 Score=61.66 Aligned_cols=99 Identities=12% Similarity=0.114 Sum_probs=77.1
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEe
Q 001747 30 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 109 (1018)
Q Consensus 30 ~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~ 109 (1018)
.|++.+|+|+|.|.++..=++.|..+|. ++|++-++.. +.+.++-..-+++...
T Consensus 9 ~l~~~~vlvvGgG~vA~rk~~~ll~~ga-~v~visp~~~-------------------------~~~~~l~~~~~i~~~~ 62 (457)
T PRK10637 9 QLRDRDCLLVGGGDVAERKARLLLDAGA-RLTVNALAFI-------------------------PQFTAWADAGMLTLVE 62 (457)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCCC-------------------------HHHHHHHhCCCEEEEe
Confidence 5789999999999999999999999997 7888854321 1222332333567777
Q ss_pred cCCChhhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEEeeecc
Q 001747 110 SKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRG 156 (1018)
Q Consensus 110 ~~l~~~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~~~~~G 156 (1018)
....++.++++++||+++++.+...+|.+.|++.+ +++-.++.-.
T Consensus 63 ~~~~~~dl~~~~lv~~at~d~~~n~~i~~~a~~~~--~lvN~~d~~~ 107 (457)
T PRK10637 63 GPFDESLLDTCWLAIAATDDDAVNQRVSEAAEARR--IFCNVVDAPK 107 (457)
T ss_pred CCCChHHhCCCEEEEECCCCHHHhHHHHHHHHHcC--cEEEECCCcc
Confidence 77788889999999999999898999999999999 7665555433
No 127
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=95.63 E-value=0.031 Score=62.51 Aligned_cols=78 Identities=18% Similarity=0.256 Sum_probs=53.3
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEec
Q 001747 31 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 110 (1018)
Q Consensus 31 L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~~ 110 (1018)
+.+++|+|+|+||.|..|+-.|+..|+++|+|+|.+. .||+++++++.+..+...+.....
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~-------------------~ka~~La~~~~~~~~~~~~~~~~~ 185 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT-------------------SRAQALADVINNAVGREAVVGVDA 185 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH-------------------HHHHHHHHHHhhccCcceEEecCH
Confidence 4568999999999999999999999999999997532 378888777754444322222110
Q ss_pred CCChhhccCCceEEEcc
Q 001747 111 KLTKEQLSDFQAVVFTD 127 (1018)
Q Consensus 111 ~l~~~~~~~~dvVI~~~ 127 (1018)
.-..+.+..+|+||.|+
T Consensus 186 ~~~~~~~~~~divINaT 202 (283)
T PRK14027 186 RGIEDVIAAADGVVNAT 202 (283)
T ss_pred hHHHHHHhhcCEEEEcC
Confidence 00012345677777665
No 128
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=95.58 E-value=0.073 Score=56.76 Aligned_cols=100 Identities=19% Similarity=0.166 Sum_probs=75.1
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEe
Q 001747 30 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 109 (1018)
Q Consensus 30 ~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~ 109 (1018)
.|.+++|+|+|.|.+|..=++.|+.+|. +++++-++. + .. ...+.+-+ .+....
T Consensus 9 ~l~~k~VlvvGgG~va~rKa~~ll~~ga-~v~Vvs~~~-~-~e--------------------l~~~~~~~---~i~~~~ 62 (210)
T COG1648 9 DLEGKKVLVVGGGSVALRKARLLLKAGA-DVTVVSPEF-E-PE--------------------LKALIEEG---KIKWIE 62 (210)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhcCC-EEEEEcCCc-c-HH--------------------HHHHHHhc---Ccchhh
Confidence 4678999999999999999999999998 777776543 1 11 11222222 255556
Q ss_pred cCCChhhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEEeeecce
Q 001747 110 SKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGL 157 (1018)
Q Consensus 110 ~~l~~~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~~~~~G~ 157 (1018)
.....+.+..+++||.++++.+...++.+.|++++ +|.-.++--.+
T Consensus 63 ~~~~~~~~~~~~lviaAt~d~~ln~~i~~~a~~~~--i~vNv~D~p~~ 108 (210)
T COG1648 63 REFDAEDLDDAFLVIAATDDEELNERIAKAARERR--ILVNVVDDPEL 108 (210)
T ss_pred cccChhhhcCceEEEEeCCCHHHHHHHHHHHHHhC--CceeccCCccc
Confidence 66777777789999999999999999999999999 76666555444
No 129
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=95.26 E-value=0.036 Score=61.99 Aligned_cols=78 Identities=21% Similarity=0.266 Sum_probs=53.8
Q ss_pred HhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCCeE
Q 001747 428 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNI 507 (1018)
Q Consensus 428 l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~~i 507 (1018)
+.+++++|+|+||.|..++-.|+..|+ .+|+|+|.+. .|++.+++.+....+...+
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~-----~~i~i~nR~~-------------------~ka~~La~~~~~~~~~~~~ 180 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGV-----QKLQVADLDT-------------------SRAQALADVINNAVGREAV 180 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCC-----CEEEEEcCCH-------------------HHHHHHHHHHhhccCcceE
Confidence 457899999999999999999999999 8999986442 3777787776544443222
Q ss_pred EEEecccCCccccccccccccCccEEEEcc
Q 001747 508 EALQNRVGPETENVFDDTFWENITCVINAL 537 (1018)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~dvVi~al 537 (1018)
.... .. . + ......+|+||||+
T Consensus 181 ~~~~--~~----~-~-~~~~~~~divINaT 202 (283)
T PRK14027 181 VGVD--AR----G-I-EDVIAAADGVVNAT 202 (283)
T ss_pred EecC--Hh----H-H-HHHHhhcCEEEEcC
Confidence 2211 00 0 0 11235789999997
No 130
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=95.25 E-value=0.042 Score=61.69 Aligned_cols=84 Identities=17% Similarity=0.192 Sum_probs=54.9
Q ss_pred HhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCCeE
Q 001747 428 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNI 507 (1018)
Q Consensus 428 l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~~i 507 (1018)
+.+++++|+|+||+|..++..|+..|+ .+|+|++.+.- ...|++.+++.+....+.+.+
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~-----~~V~I~~R~~~----------------~~~~a~~l~~~l~~~~~~~~~ 182 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGA-----KEITIFNIKDD----------------FYERAEQTAEKIKQEVPECIV 182 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC-----CEEEEEeCCch----------------HHHHHHHHHHHHhhcCCCcee
Confidence 567889999999999999999999999 77999864210 113566666666655555444
Q ss_pred EEEecccCCccccccccccccCccEEEEcc
Q 001747 508 EALQNRVGPETENVFDDTFWENITCVINAL 537 (1018)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~dvVi~al 537 (1018)
.... +.. .+.+ ...+..+|+||||+
T Consensus 183 ~~~d--~~~-~~~~--~~~~~~~DilINaT 207 (289)
T PRK12548 183 NVYD--LND-TEKL--KAEIASSDILVNAT 207 (289)
T ss_pred EEec--hhh-hhHH--HhhhccCCEEEEeC
Confidence 3322 221 1111 12345679999886
No 131
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.12 E-value=0.048 Score=61.13 Aligned_cols=171 Identities=15% Similarity=0.099 Sum_probs=89.1
Q ss_pred CcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccC-c--ccCcccccccchHHHHHHHHHHhhCCCCeE
Q 001747 431 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLS-R--QFLFRDWNIGQAKSTVAASAATSINPRLNI 507 (1018)
Q Consensus 431 ~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLn-R--qflf~~~diG~~Ka~va~~~l~~~np~~~i 507 (1018)
++|.|||+|..|+.++.+|++.|. .++++|.+.=.....- | +.+-+-..-|+-....+...+.+ +
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~------~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~------l 73 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV------DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALAR------L 73 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC------EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhC------e
Confidence 489999999999999999999998 8999986643222100 0 00000001121111111111111 1
Q ss_pred EEEecccCCccccccccccccCccEEEEcccC-hhHHHHH----HhhccccccceEecccCCc-ccceEEEeCccccccc
Q 001747 508 EALQNRVGPETENVFDDTFWENITCVINALDN-VNARLYV----DQRCLYFQKPLLESGTLGA-KCNTQMVIPHLTENYG 581 (1018)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn-~~ar~~v----~~~c~~~~~pli~~g~~g~-~g~~~v~ip~~t~~y~ 581 (1018)
+.. . + + +-++++|+||.|+-+ .+.++.+ ...|-..+..+.. -|.+. -........+...+..
T Consensus 74 ~~~-----~---~-~--~~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~s-nTS~~~~~~la~~~~~~~r~~g 141 (286)
T PRK07819 74 RFT-----T---D-L--GDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLAS-NTSSIPIMKLAAATKRPGRVLG 141 (286)
T ss_pred Eee-----C---C-H--HHhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEE-CCCCCCHHHHHhhcCCCccEEE
Confidence 111 1 1 1 225789999999754 4555544 3333233444543 22221 1111111111111222
Q ss_pred CCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhccChhhh
Q 001747 582 ASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEV 625 (1018)
Q Consensus 582 ~~~~~~~~~~p~Ct~~~~P~~~~h~i~wAk~~f~~~F~~~~~~~ 625 (1018)
..--.|....|...+-.-+.....++++++.++....+..|-.+
T Consensus 142 ~hf~~P~~~~~lvElv~~~~T~~~~~~~~~~~~~~~lgk~pv~v 185 (286)
T PRK07819 142 LHFFNPVPVLPLVELVPTLVTSEATVARAEEFASDVLGKQVVRA 185 (286)
T ss_pred EecCCCcccCceEEEeCCCCCCHHHHHHHHHHHHHhCCCCceEe
Confidence 22112222346667778889999999999999887777665433
No 132
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=94.96 E-value=0.055 Score=60.49 Aligned_cols=75 Identities=19% Similarity=0.088 Sum_probs=53.0
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEe-
Q 001747 31 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT- 109 (1018)
Q Consensus 31 L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~- 109 (1018)
+++++|+|+|+||.|..++..|...|+++++|++.+ ..||+.+++++..... +....
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt-------------------~~ka~~La~~~~~~~~---~~~~~~ 180 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRN-------------------PDKLSRLVDLGVQVGV---ITRLEG 180 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC-------------------HHHHHHHHHHhhhcCc---ceeccc
Confidence 567899999999999999999999999999999742 2377777776643311 22111
Q ss_pred -cCCChhhccCCceEEEccc
Q 001747 110 -SKLTKEQLSDFQAVVFTDI 128 (1018)
Q Consensus 110 -~~l~~~~~~~~dvVI~~~~ 128 (1018)
.++ .+.+.++|+||.|+.
T Consensus 181 ~~~~-~~~~~~~DiVInaTp 199 (282)
T TIGR01809 181 DSGG-LAIEKAAEVLVSTVP 199 (282)
T ss_pred hhhh-hhcccCCCEEEECCC
Confidence 111 134567899998864
No 133
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=94.95 E-value=0.041 Score=64.00 Aligned_cols=76 Identities=25% Similarity=0.304 Sum_probs=57.1
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEe
Q 001747 30 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 109 (1018)
Q Consensus 30 ~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~ 109 (1018)
.|.+++|+|||+|-+|.-+||+|...|++.|+|...+ ..||+.+++++. +.+..
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT-------------------~erA~~La~~~~-------~~~~~ 228 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRT-------------------LERAEELAKKLG-------AEAVA 228 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCC-------------------HHHHHHHHHHhC-------Ceeec
Confidence 3789999999999999999999999999999997532 237777777775 22222
Q ss_pred cCCChhhccCCceEEEcccCHH
Q 001747 110 SKLTKEQLSDFQAVVFTDISLD 131 (1018)
Q Consensus 110 ~~l~~~~~~~~dvVI~~~~~~~ 131 (1018)
-+--.+.+.++||||.++....
T Consensus 229 l~el~~~l~~~DvVissTsa~~ 250 (414)
T COG0373 229 LEELLEALAEADVVISSTSAPH 250 (414)
T ss_pred HHHHHHhhhhCCEEEEecCCCc
Confidence 1112357889999999876433
No 134
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=94.92 E-value=0.077 Score=53.02 Aligned_cols=74 Identities=20% Similarity=0.246 Sum_probs=53.6
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHhcCC-EEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCc--EEEEEe
Q 001747 34 SNILVSGM-QGLGAEIAKNLILAGVK-SVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAV--VLSTLT 109 (1018)
Q Consensus 34 s~VlIiG~-gglG~eiaKnLvlaGVg-~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V--~v~~~~ 109 (1018)
.||.|+|+ |.+|+.+|-.|++.|+. ++.|+|.+ ..+++..+.-|....+.. .+....
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~-------------------~~~~~g~a~Dl~~~~~~~~~~~~i~~ 61 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDIN-------------------EDKAEGEALDLSHASAPLPSPVRITS 61 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESS-------------------HHHHHHHHHHHHHHHHGSTEEEEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccC-------------------cccceeeehhhhhhhhhccccccccc
Confidence 38999999 99999999999999985 59999852 225555555555554433 333333
Q ss_pred cCCChhhccCCceEEEccc
Q 001747 110 SKLTKEQLSDFQAVVFTDI 128 (1018)
Q Consensus 110 ~~l~~~~~~~~dvVI~~~~ 128 (1018)
-+.+.+++.|+||.+..
T Consensus 62 --~~~~~~~~aDivvitag 78 (141)
T PF00056_consen 62 --GDYEALKDADIVVITAG 78 (141)
T ss_dssp --SSGGGGTTESEEEETTS
T ss_pred --ccccccccccEEEEecc
Confidence 34567889999999865
No 135
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=94.81 E-value=0.056 Score=60.44 Aligned_cols=76 Identities=13% Similarity=0.225 Sum_probs=51.6
Q ss_pred HhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCCeE
Q 001747 428 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNI 507 (1018)
Q Consensus 428 l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~~i 507 (1018)
+.+++++|+|+||.|..++..|+.+|+ .+|+|++.+ ..|++.+++.+.... .+
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~-----~~i~I~nRt-------------------~~ka~~La~~~~~~~---~~ 175 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGV-----TDITVINRN-------------------PDKLSRLVDLGVQVG---VI 175 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCC-----CeEEEEeCC-------------------HHHHHHHHHHhhhcC---cc
Confidence 567899999999999999999999999 899998532 246777776654321 11
Q ss_pred EEEecccCCccccccccccccCccEEEEcc
Q 001747 508 EALQNRVGPETENVFDDTFWENITCVINAL 537 (1018)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~dvVi~al 537 (1018)
..+. . .+.. .....++|+||||+
T Consensus 176 ~~~~----~-~~~~--~~~~~~~DiVInaT 198 (282)
T TIGR01809 176 TRLE----G-DSGG--LAIEKAAEVLVSTV 198 (282)
T ss_pred eecc----c-hhhh--hhcccCCCEEEECC
Confidence 1111 0 0000 12346799999997
No 136
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=94.77 E-value=0.1 Score=54.96 Aligned_cols=86 Identities=17% Similarity=0.196 Sum_probs=68.5
Q ss_pred hhccCHHHHHHhhcCeEEEEcCChHHHH-HHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHh
Q 001747 20 LAVYGRETMRRLFASNILVSGMQGLGAE-IAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQE 98 (1018)
Q Consensus 20 i~l~G~~~q~~L~~s~VlIiG~gglG~e-iaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~e 98 (1018)
...=+..++++|++++|.|+|.|+.|++ ++..|..+||+.+.
T Consensus 92 ~g~~~~~a~~~l~~~~V~V~~~G~~~~~~l~~aLaa~Gv~~~~------------------------------------- 134 (193)
T TIGR03882 92 LGVDPAAALERLRQLTVTVLSFGEGGAAALAAALAAAGIRIAP------------------------------------- 134 (193)
T ss_pred cCCCHHHHHHHHhcCcEEEEecCCCcHHHHHHHHHHcCCCccC-------------------------------------
Confidence 3344677899999999999999999988 99999999997654
Q ss_pred hCCCcEEEEEecCCChhhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEEeeecceeEEE
Q 001747 99 LNNAVVLSTLTSKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSV 161 (1018)
Q Consensus 99 lNp~V~v~~~~~~l~~~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~~~~~G~~G~v 161 (1018)
++ ...++|++.+...+....+|+...+.+ +|++.+...|..+.+
T Consensus 135 --------------~~---a~l~vVl~~Dyl~p~L~~~n~~~l~~~--~~~l~v~~~~~~~~~ 178 (193)
T TIGR03882 135 --------------SE---ADLTVVLTDDYLDPELAAINQRALAAG--RPWLLVKPGGVQPWI 178 (193)
T ss_pred --------------CC---CCEEEEEeCCCCChHHHHHHHHHHHcC--CceEEEEeCCceEEE
Confidence 00 134566666656677889999999999 999999998887764
No 137
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=94.75 E-value=0.099 Score=58.68 Aligned_cols=60 Identities=18% Similarity=0.238 Sum_probs=45.2
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEE
Q 001747 31 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLS 106 (1018)
Q Consensus 31 L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~ 106 (1018)
+++++|+|+|+||+|..++.-|+..|+++++|++.+.- ...|++.+++.+.+..+.+.+.
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~----------------~~~~a~~l~~~l~~~~~~~~~~ 183 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDD----------------FYERAEQTAEKIKQEVPECIVN 183 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCch----------------HHHHHHHHHHHHhhcCCCceeE
Confidence 56789999999999999999999999999999885210 1136777777776655544443
No 138
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=94.73 E-value=0.088 Score=58.63 Aligned_cols=74 Identities=26% Similarity=0.337 Sum_probs=55.1
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEecC
Q 001747 32 FASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 111 (1018)
Q Consensus 32 ~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~~~ 111 (1018)
...+|+|+|+||.+..|+.-|...|+.+|+|++.+ ..||+.+++.+.+..+.+......+
T Consensus 125 ~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt-------------------~~ra~~La~~~~~~~~~~~~~~~~~- 184 (283)
T COG0169 125 TGKRVLILGAGGAARAVAFALAEAGAKRITVVNRT-------------------RERAEELADLFGELGAAVEAAALAD- 184 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCC-------------------HHHHHHHHHHhhhcccccccccccc-
Confidence 46899999999999999999999999999998742 3488888888888877333332221
Q ss_pred CChhhccCCceEEEcc
Q 001747 112 LTKEQLSDFQAVVFTD 127 (1018)
Q Consensus 112 l~~~~~~~~dvVI~~~ 127 (1018)
+ +...++|+||.|+
T Consensus 185 ~--~~~~~~dliINaT 198 (283)
T COG0169 185 L--EGLEEADLLINAT 198 (283)
T ss_pred c--ccccccCEEEECC
Confidence 1 1111688888776
No 139
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=94.70 E-value=0.097 Score=58.41 Aligned_cols=74 Identities=24% Similarity=0.348 Sum_probs=53.3
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEec
Q 001747 31 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 110 (1018)
Q Consensus 31 L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~~ 110 (1018)
+.+++|+|+|+||+|..+++.|...|+.++++++.+ ..|++.+++.+....+ +.+ ..
T Consensus 121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~-------------------~~~a~~l~~~~~~~~~-~~~---~~ 177 (278)
T PRK00258 121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNRT-------------------VERAEELAKLFGALGK-AEL---DL 177 (278)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCC-------------------HHHHHHHHHHhhhccc-eee---cc
Confidence 567899999999999999999999999999999752 2366666666654321 222 11
Q ss_pred CCChhhccCCceEEEccc
Q 001747 111 KLTKEQLSDFQAVVFTDI 128 (1018)
Q Consensus 111 ~l~~~~~~~~dvVI~~~~ 128 (1018)
.. .+.+.++|+||.|+.
T Consensus 178 ~~-~~~~~~~DivInaTp 194 (278)
T PRK00258 178 EL-QEELADFDLIINATS 194 (278)
T ss_pred cc-hhccccCCEEEECCc
Confidence 11 245678999998863
No 140
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=94.57 E-value=0.081 Score=59.05 Aligned_cols=36 Identities=22% Similarity=0.493 Sum_probs=32.5
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecC
Q 001747 427 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 467 (1018)
Q Consensus 427 ~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~ 467 (1018)
.+.+++++|+|+||+|..+++.|+..|+ .+|+|++.
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~-----~~V~v~~R 155 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPLLDLGV-----AEITIVNR 155 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHcCC-----CEEEEEeC
Confidence 4678899999999999999999999998 79999864
No 141
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=94.57 E-value=0.054 Score=57.41 Aligned_cols=84 Identities=26% Similarity=0.394 Sum_probs=60.1
Q ss_pred HhcCcEEEEc-cCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCCe
Q 001747 428 LEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 506 (1018)
Q Consensus 428 l~~~~v~vvG-~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~~ 506 (1018)
+.+++++++| |||||-+++|.|+.-|+ ..+.|.| ..| | --+..+++++||..+
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~kgi-----k~~~i~~--~~E--n-----------------~~a~akL~ai~p~~~ 56 (261)
T KOG4169|consen 3 LTGKNALVTGGAGGIGLATSKALLEKGI-----KVLVIDD--SEE--N-----------------PEAIAKLQAINPSVS 56 (261)
T ss_pred ccCceEEEecCCchhhHHHHHHHHHcCc-----hheeehh--hhh--C-----------------HHHHHHHhccCCCce
Confidence 5678888886 99999999999999999 4444433 221 1 225667999999999
Q ss_pred EEEEecccCCcc--cccccc--ccccCccEEEEcc
Q 001747 507 IEALQNRVGPET--ENVFDD--TFWENITCVINAL 537 (1018)
Q Consensus 507 i~~~~~~~~~~~--~~~~~~--~~~~~~dvVi~al 537 (1018)
+..+...+.... +..|+. .-|...|++||.-
T Consensus 57 v~F~~~DVt~~~~~~~~f~ki~~~fg~iDIlINgA 91 (261)
T KOG4169|consen 57 VIFIKCDVTNRGDLEAAFDKILATFGTIDILINGA 91 (261)
T ss_pred EEEEEeccccHHHHHHHHHHHHHHhCceEEEEccc
Confidence 999999887521 222221 2367889999865
No 142
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.49 E-value=0.14 Score=61.17 Aligned_cols=95 Identities=24% Similarity=0.218 Sum_probs=65.1
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEec
Q 001747 31 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 110 (1018)
Q Consensus 31 L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~~ 110 (1018)
|++++|+|+|.|++|.++|+.|+..|. .++++|.+.- ...+...++|.+++ +.....
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~~------------------~~~~~~~~~l~~~~----~~~~~~ 59 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKEE------------------DQLKEALEELGELG----IELVLG 59 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCch------------------HHHHHHHHHHHhcC----CEEEeC
Confidence 678999999999999999999999997 7999986431 01122223443332 334444
Q ss_pred CCChhhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEE
Q 001747 111 KLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIK 151 (1018)
Q Consensus 111 ~l~~~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~ 151 (1018)
...++...++|+||.+..... ...+-..|+++| ||.+.
T Consensus 60 ~~~~~~~~~~d~vv~~~g~~~-~~~~~~~a~~~~--i~~~~ 97 (450)
T PRK14106 60 EYPEEFLEGVDLVVVSPGVPL-DSPPVVQAHKKG--IEVIG 97 (450)
T ss_pred CcchhHhhcCCEEEECCCCCC-CCHHHHHHHHCC--CcEEe
Confidence 444456678999998765322 233667788999 88875
No 143
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=94.45 E-value=0.073 Score=51.93 Aligned_cols=99 Identities=23% Similarity=0.225 Sum_probs=60.2
Q ss_pred cEEEEcc-CcchHHHHHHHHh-cCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCCeEEE
Q 001747 432 KVFIVGS-GALGCEFLKNVAL-MGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEA 509 (1018)
Q Consensus 432 ~v~vvG~-GgiG~e~lk~La~-~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~~i~~ 509 (1018)
||.|+|+ |-.|.++++.+.. -|+ --.-.+|... |. +-..|+|. .+......+.
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~-----~lv~~v~~~~---~~------~~g~d~g~--------~~~~~~~~~~--- 56 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGF-----ELVGAVDRKP---SA------KVGKDVGE--------LAGIGPLGVP--- 56 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTE-----EEEEEEETTT---ST------TTTSBCHH--------HCTSST-SSB---
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCc-----EEEEEEecCC---cc------cccchhhh--------hhCcCCcccc---
Confidence 7999999 9999999999998 666 3334554332 11 11234441 1111111111
Q ss_pred EecccCCccccccccccccCccEEEEcccChhHHHHHHhhccccccceEecccCCcc
Q 001747 510 LQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAK 566 (1018)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~~~pli~~g~~g~~ 566 (1018)
+..+. ++.+..+|+||+++ ++++-...-+.|.++++|+| .||.|+.
T Consensus 57 ----v~~~l-----~~~~~~~DVvIDfT-~p~~~~~~~~~~~~~g~~~V-iGTTG~~ 102 (124)
T PF01113_consen 57 ----VTDDL-----EELLEEADVVIDFT-NPDAVYDNLEYALKHGVPLV-IGTTGFS 102 (124)
T ss_dssp ----EBS-H-----HHHTTH-SEEEEES--HHHHHHHHHHHHHHT-EEE-EE-SSSH
T ss_pred ----cchhH-----HHhcccCCEEEEcC-ChHHhHHHHHHHHhCCCCEE-EECCCCC
Confidence 11111 24456699999999 88888888889999999999 7888874
No 144
>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein. The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.
Probab=94.38 E-value=0.03 Score=50.77 Aligned_cols=41 Identities=24% Similarity=0.420 Sum_probs=31.2
Q ss_pred ccccCchhhhhhhhhhhhHhhhhcCCcccc-ceeeeeecCCC
Q 001747 355 RAVLNPMAAMFGGIVGQEVVKACSGKFHPL-YQFFYFDSVES 395 (1018)
Q Consensus 355 ~~el~pvaA~iGGiaAQEVIK~iT~kf~Pi-~n~~~fD~~e~ 395 (1018)
.+-+.|+.+++|.+.|+|+||.|+|.-.|+ +.+++||+.+.
T Consensus 23 ~GVlg~~~giigslqA~eaik~l~g~~~~l~~~l~~~D~~~~ 64 (84)
T PF05237_consen 23 AGVLGPVVGIIGSLQANEAIKLLLGIGEPLSGKLLTIDLLNM 64 (84)
T ss_dssp S-B-HHHHHHHHHHHHHHHHHHHCT-S---BTEEEEEETTTT
T ss_pred cccccchHHHHHHHHHHHHHHHHHhcCCchhhheeeEECCCC
Confidence 467999999999999999999999987775 56888998755
No 145
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=94.31 E-value=0.053 Score=63.07 Aligned_cols=75 Identities=27% Similarity=0.370 Sum_probs=57.2
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCCe
Q 001747 427 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 506 (1018)
Q Consensus 427 ~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~~ 506 (1018)
.|.+++|+|||+|.+|.-++++|+..|+ ..|+|+ ||++ .||+-+|+.+. ..
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~-----~~i~Ia----------NRT~---------erA~~La~~~~-----~~ 225 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGV-----KKITIA----------NRTL---------ERAEELAKKLG-----AE 225 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCC-----CEEEEE----------cCCH---------HHHHHHHHHhC-----Ce
Confidence 3888999999999999999999999999 899985 7774 37777777664 22
Q ss_pred EEEEecccCCccccccccccccCccEEEEcccCh
Q 001747 507 IEALQNRVGPETENVFDDTFWENITCVINALDNV 540 (1018)
Q Consensus 507 i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~ 540 (1018)
+..+. .+ ..++..+|+||.|+..+
T Consensus 226 ~~~l~--------el--~~~l~~~DvVissTsa~ 249 (414)
T COG0373 226 AVALE--------EL--LEALAEADVVISSTSAP 249 (414)
T ss_pred eecHH--------HH--HHhhhhCCEEEEecCCC
Confidence 22221 11 35678999999998654
No 146
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=94.26 E-value=0.1 Score=53.40 Aligned_cols=111 Identities=21% Similarity=0.258 Sum_probs=63.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEecCC-
Q 001747 34 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKL- 112 (1018)
Q Consensus 34 s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~~~l- 112 (1018)
.+|.+||+|..|+.+|+||..+|. .++++|.+.-....+... |-..+....+...+. ++-+......-
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~--------g~~~~~s~~e~~~~~--dvvi~~v~~~~~ 70 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAEA--------GAEVADSPAEAAEQA--DVVILCVPDDDA 70 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHHT--------TEEEESSHHHHHHHB--SEEEE-SSSHHH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHHh--------hhhhhhhhhhHhhcc--cceEeecccchh
Confidence 489999999999999999999998 789998643222111111 111111122222222 33333333210
Q ss_pred Chh------h---ccCCceEEEcc-cCHHHHHHHHHHHHhcCCCceeEEeeecce
Q 001747 113 TKE------Q---LSDFQAVVFTD-ISLDKAIEFDDFCHNHQPAISFIKAEVRGL 157 (1018)
Q Consensus 113 ~~~------~---~~~~dvVI~~~-~~~~~~~~ln~~c~~~~~~i~fi~~~~~G~ 157 (1018)
.++ . +..=+++|+++ .+++...++.+.+.+++ +.||.+.+.|-
T Consensus 71 v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g--~~~vdapV~Gg 123 (163)
T PF03446_consen 71 VEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKG--VRYVDAPVSGG 123 (163)
T ss_dssp HHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTT--EEEEEEEEESH
T ss_pred hhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhcc--ceeeeeeeecc
Confidence 011 1 22345777655 47788889999999999 99999887764
No 147
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.21 E-value=0.15 Score=58.02 Aligned_cols=169 Identities=15% Similarity=0.103 Sum_probs=89.0
Q ss_pred CcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCCeEEEE
Q 001747 431 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEAL 510 (1018)
Q Consensus 431 ~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~~i~~~ 510 (1018)
++|.|||+|.+|+.++..|+..|. .++++|.+.=....+ +.....+.+.+.+..+. -...
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~------~V~l~D~~~~~~~~~------------~~~i~~~~~~~~~~~~~--~~~~ 67 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL------DVVAWDPAPGAEAAL------------RANVANAWPALERQGLA--PGAS 67 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC------eEEEEeCCHHHHHHH------------HHHHHHHHHHHHHcCCC--hhhH
Confidence 579999999999999999999998 999999764211110 01111111111111110 0000
Q ss_pred ecccCCccccccccccccCccEEEEccc-ChhHHHHHHhhcccccc--ceEecccCCcccc-eEEEeCcccccccCCCCC
Q 001747 511 QNRVGPETENVFDDTFWENITCVINALD-NVNARLYVDQRCLYFQK--PLLESGTLGAKCN-TQMVIPHLTENYGASRDP 586 (1018)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~dvVi~alD-n~~ar~~v~~~c~~~~~--pli~~g~~g~~g~-~~v~ip~~t~~y~~~~~~ 586 (1018)
..++...+ . + .+.++++|+|+.|+- +.+.++.+-+.....-. -+|.+.|.+..-. ..-...+-..|...+.-.
T Consensus 68 ~~~i~~~~-~-l-~~av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~Hffn 144 (321)
T PRK07066 68 PARLRFVA-T-I-EACVADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFN 144 (321)
T ss_pred HhhceecC-C-H-HHHhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCC
Confidence 01111100 1 1 244689999999975 44555543322222211 2777777765322 110111111233332222
Q ss_pred CCCCCCcccccCCCCChhhHHHHHHHHhhhhhccChh
Q 001747 587 PEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPA 623 (1018)
Q Consensus 587 ~~~~~p~Ct~~~~P~~~~h~i~wAk~~f~~~F~~~~~ 623 (1018)
|....|+.-+-.-|....-+++++++++.. .+..|-
T Consensus 145 P~~~~pLVEVv~g~~T~~e~~~~~~~f~~~-lGk~pV 180 (321)
T PRK07066 145 PVYLLPLVEVLGGERTAPEAVDAAMGIYRA-LGMRPL 180 (321)
T ss_pred ccccCceEEEeCCCCCCHHHHHHHHHHHHH-cCCEeE
Confidence 333456666666788888899999998876 555543
No 148
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.16 E-value=0.093 Score=62.59 Aligned_cols=36 Identities=33% Similarity=0.582 Sum_probs=32.8
Q ss_pred HhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCc
Q 001747 428 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 469 (1018)
Q Consensus 428 l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~ 469 (1018)
+.+++|+|+|+|++|.++++.|+..|. .++++|.+.
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~------~V~~~d~~~ 38 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGA------KVILTDEKE 38 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEEeCCc
Confidence 578999999999999999999999998 899998754
No 149
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=94.15 E-value=0.081 Score=62.29 Aligned_cols=76 Identities=13% Similarity=0.198 Sum_probs=53.7
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEe
Q 001747 30 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 109 (1018)
Q Consensus 30 ~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~ 109 (1018)
.+.+++|+|+|+||.|..++++|...|+..|+|+..+ ..||+..++.+. ...+....
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt-------------------~~ra~~La~~~~----~~~~~~~~ 234 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRT-------------------IEKAQKITSAFR----NASAHYLS 234 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCC-------------------HHHHHHHHHHhc----CCeEecHH
Confidence 3678999999999999999999999999999997642 125555555442 12221111
Q ss_pred cCCChhhccCCceEEEcccCH
Q 001747 110 SKLTKEQLSDFQAVVFTDISL 130 (1018)
Q Consensus 110 ~~l~~~~~~~~dvVI~~~~~~ 130 (1018)
++ .+.+.++|+||.|+.+.
T Consensus 235 -~l-~~~l~~aDiVI~aT~a~ 253 (414)
T PRK13940 235 -EL-PQLIKKADIIIAAVNVL 253 (414)
T ss_pred -HH-HHHhccCCEEEECcCCC
Confidence 11 35688999999998653
No 150
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.14 E-value=0.17 Score=54.64 Aligned_cols=96 Identities=18% Similarity=0.276 Sum_probs=65.2
Q ss_pred CcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCCeEEEE
Q 001747 431 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEAL 510 (1018)
Q Consensus 431 ~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~~i~~~ 510 (1018)
++++|+|||-+|..+++.|+..|- .+++||.|.- .+.+.+.. .....++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~------~Vv~Id~d~~----------------------~~~~~~~~---~~~~~~v 49 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGH------NVVLIDRDEE----------------------RVEEFLAD---ELDTHVV 49 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCC------ceEEEEcCHH----------------------HHHHHhhh---hcceEEE
Confidence 479999999999999999999997 8899987643 11111211 1233344
Q ss_pred ecccCCccccccccccccCccEEEEcccChhHHHHHHhhccc-cccceEe
Q 001747 511 QNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLY-FQKPLLE 559 (1018)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~-~~~pli~ 559 (1018)
...-+. +..+-+.-..++|+++.++++...-..+...+.. ++.|-+.
T Consensus 50 ~gd~t~--~~~L~~agi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~vi 97 (225)
T COG0569 50 IGDATD--EDVLEEAGIDDADAVVAATGNDEVNSVLALLALKEFGVPRVI 97 (225)
T ss_pred EecCCC--HHHHHhcCCCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEE
Confidence 333322 2233333467899999999998877777766655 7888774
No 151
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=94.11 E-value=0.083 Score=56.33 Aligned_cols=95 Identities=19% Similarity=0.215 Sum_probs=69.2
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCc-ccccccCcccCcccccccchHHHHHHHHHHhhCCCC
Q 001747 427 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV-IEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRL 505 (1018)
Q Consensus 427 ~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~-Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~ 505 (1018)
.|.+++|+|||.|.+|..=++.|+.+|. +++++-.+. -+..++ + ..+
T Consensus 9 ~l~~k~VlvvGgG~va~rKa~~ll~~ga------~v~Vvs~~~~~el~~~----------------------~-~~~--- 56 (210)
T COG1648 9 DLEGKKVLVVGGGSVALRKARLLLKAGA------DVTVVSPEFEPELKAL----------------------I-EEG--- 56 (210)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhcCC------EEEEEcCCccHHHHHH----------------------H-Hhc---
Confidence 4678899999999999999999999996 999886554 111111 1 111
Q ss_pred eEEEEecccCCccccccccccccCccEEEEcccChhHHHHHHhhccccccceEecc
Q 001747 506 NIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESG 561 (1018)
Q Consensus 506 ~i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~~~pli~~g 561 (1018)
++..+... |+.+.+..+++||-|+|+.+--..+-+.|..+++|+-.+.
T Consensus 57 ~i~~~~~~--------~~~~~~~~~~lviaAt~d~~ln~~i~~~a~~~~i~vNv~D 104 (210)
T COG1648 57 KIKWIERE--------FDAEDLDDAFLVIAATDDEELNERIAKAARERRILVNVVD 104 (210)
T ss_pred Ccchhhcc--------cChhhhcCceEEEEeCCCHHHHHHHHHHHHHhCCceeccC
Confidence 12222222 3344556699999999999999999999999999876433
No 152
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=94.11 E-value=0.14 Score=58.09 Aligned_cols=72 Identities=19% Similarity=0.262 Sum_probs=51.6
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCC-EEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhC----CCcEEEEE
Q 001747 34 SNILVSGMQGLGAEIAKNLILAGVK-SVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELN----NAVVLSTL 108 (1018)
Q Consensus 34 s~VlIiG~gglG~eiaKnLvlaGVg-~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elN----p~V~v~~~ 108 (1018)
.+|.|+|+|++|+.+|..|+..|+. ++.|+|.+. .+++..+..|.... ..+.+..
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~-------------------~~~~~~a~dL~~~~~~~~~~~~i~~- 60 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE-------------------EKAEGEALDLEDALAFLPSPVKIKA- 60 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc-------------------chhhHhHhhHHHHhhccCCCeEEEc-
Confidence 3799999999999999999999985 899998632 24555555555443 2233332
Q ss_pred ecCCChhhccCCceEEEccc
Q 001747 109 TSKLTKEQLSDFQAVVFTDI 128 (1018)
Q Consensus 109 ~~~l~~~~~~~~dvVI~~~~ 128 (1018)
.+.+.+.++|+||.|..
T Consensus 61 ---~~~~~l~~aDIVIitag 77 (306)
T cd05291 61 ---GDYSDCKDADIVVITAG 77 (306)
T ss_pred ---CCHHHhCCCCEEEEccC
Confidence 23345789999998865
No 153
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=94.10 E-value=0.19 Score=56.39 Aligned_cols=80 Identities=18% Similarity=0.226 Sum_probs=52.7
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEec
Q 001747 31 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 110 (1018)
Q Consensus 31 L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~~ 110 (1018)
+++++|+|+|+||.+..|+-.|+..|+++|+|++.+.- ...||+.+++++....+ ..+.....
T Consensus 122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~----------------~~~ka~~la~~~~~~~~-~~~~~~~~ 184 (288)
T PRK12749 122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE----------------FFDKALAFAQRVNENTD-CVVTVTDL 184 (288)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc----------------HHHHHHHHHHHhhhccC-ceEEEech
Confidence 46789999999999999999999999999999985210 13478887777754322 22222211
Q ss_pred C-C--ChhhccCCceEEEcc
Q 001747 111 K-L--TKEQLSDFQAVVFTD 127 (1018)
Q Consensus 111 ~-l--~~~~~~~~dvVI~~~ 127 (1018)
. . -++.+.++|+||.|+
T Consensus 185 ~~~~~l~~~~~~aDivINaT 204 (288)
T PRK12749 185 ADQQAFAEALASADILTNGT 204 (288)
T ss_pred hhhhhhhhhcccCCEEEECC
Confidence 0 0 012345677777765
No 154
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=94.09 E-value=0.17 Score=59.14 Aligned_cols=90 Identities=22% Similarity=0.283 Sum_probs=60.3
Q ss_pred EEEEcCChHHHHHHHHHHHhcCC-EEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEecCCC-
Q 001747 36 ILVSGMQGLGAEIAKNLILAGVK-SVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLT- 113 (1018)
Q Consensus 36 VlIiG~gglG~eiaKnLvlaGVg-~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~~~l~- 113 (1018)
|+|+|+|.+|..+++.|+..+-- ++++.|.+. .|++..++.+ . ...+....-++.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~-------------------~~~~~~~~~~--~--~~~~~~~~~d~~~ 57 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNP-------------------EKAERLAEKL--L--GDRVEAVQVDVND 57 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSH-------------------HHHHHHHT----T--TTTEEEEE--TTT
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCH-------------------HHHHHHHhhc--c--ccceeEEEEecCC
Confidence 79999999999999999998854 999988522 2444443333 2 234444443333
Q ss_pred ----hhhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEE
Q 001747 114 ----KEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIK 151 (1018)
Q Consensus 114 ----~~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~ 151 (1018)
.+.++++|+||.|..+. ....+-+.|.+.+ +.+|.
T Consensus 58 ~~~l~~~~~~~dvVin~~gp~-~~~~v~~~~i~~g--~~yvD 96 (386)
T PF03435_consen 58 PESLAELLRGCDVVINCAGPF-FGEPVARACIEAG--VHYVD 96 (386)
T ss_dssp HHHHHHHHTTSSEEEE-SSGG-GHHHHHHHHHHHT---EEEE
T ss_pred HHHHHHHHhcCCEEEECCccc-hhHHHHHHHHHhC--CCeec
Confidence 24688999999998766 6678899999999 98887
No 155
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=94.03 E-value=0.057 Score=48.13 Aligned_cols=31 Identities=26% Similarity=0.613 Sum_probs=28.4
Q ss_pred cEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCC
Q 001747 432 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 468 (1018)
Q Consensus 432 ~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D 468 (1018)
||+|||+|.+|+|++..|+..|. ++++++..
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~------~vtli~~~ 31 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK------EVTLIERS 31 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS------EEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHhCc------EEEEEecc
Confidence 68999999999999999999997 88988764
No 156
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=94.02 E-value=0.073 Score=62.65 Aligned_cols=76 Identities=17% Similarity=0.331 Sum_probs=52.4
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCCe
Q 001747 427 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 506 (1018)
Q Consensus 427 ~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~~ 506 (1018)
.+.+++|+|||+|+.|..++++|+..|+ .+|+|+. |. ..|++.+++.+. ...
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~-----~~I~V~n----------Rt---------~~ra~~La~~~~----~~~ 229 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAP-----KQIMLAN----------RT---------IEKAQKITSAFR----NAS 229 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCC-----CEEEEEC----------CC---------HHHHHHHHHHhc----CCe
Confidence 4678899999999999999999999999 7898873 32 125555555432 122
Q ss_pred EEEEecccCCccccccccccccCccEEEEcccCh
Q 001747 507 IEALQNRVGPETENVFDDTFWENITCVINALDNV 540 (1018)
Q Consensus 507 i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~ 540 (1018)
+..+. .+ .+.+.++|+||+|+-.+
T Consensus 230 ~~~~~--------~l--~~~l~~aDiVI~aT~a~ 253 (414)
T PRK13940 230 AHYLS--------EL--PQLIKKADIIIAAVNVL 253 (414)
T ss_pred EecHH--------HH--HHHhccCCEEEECcCCC
Confidence 11111 11 24578899999998543
No 157
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=93.94 E-value=0.1 Score=52.45 Aligned_cols=36 Identities=28% Similarity=0.473 Sum_probs=31.1
Q ss_pred HhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCC
Q 001747 428 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 468 (1018)
Q Consensus 428 l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D 468 (1018)
+.+++++|+|+|++|..+++.|+..|. ..++++|.+
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~-----~~v~v~~r~ 52 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGA-----AKIVIVNRT 52 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC-----CEEEEEcCC
Confidence 557899999999999999999999985 588888743
No 158
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=93.84 E-value=0.016 Score=60.10 Aligned_cols=93 Identities=17% Similarity=0.306 Sum_probs=56.6
Q ss_pred HHHHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCC
Q 001747 425 QKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPR 504 (1018)
Q Consensus 425 q~~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~ 504 (1018)
...|.+++|.|+|+|.||.++++.|...|+ +++.+|...-....... +.+... .+.++.+.
T Consensus 31 ~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~------~V~~~d~~~~~~~~~~~-~~~~~~------------~l~ell~~ 91 (178)
T PF02826_consen 31 GRELRGKTVGIIGYGRIGRAVARRLKAFGM------RVIGYDRSPKPEEGADE-FGVEYV------------SLDELLAQ 91 (178)
T ss_dssp BS-STTSEEEEESTSHHHHHHHHHHHHTT-------EEEEEESSCHHHHHHHH-TTEEES------------SHHHHHHH
T ss_pred ccccCCCEEEEEEEcCCcCeEeeeeecCCc------eeEEecccCChhhhccc-ccceee------------ehhhhcch
Confidence 347899999999999999999999999998 89998876543220000 000000 11111222
Q ss_pred CeEEEEecccCCccccccccccccCcc---EEEEc
Q 001747 505 LNIEALQNRVGPETENVFDDTFWENIT---CVINA 536 (1018)
Q Consensus 505 ~~i~~~~~~~~~~~~~~~~~~~~~~~d---vVi~a 536 (1018)
..+.......+++|.++++.++++... ++||.
T Consensus 92 aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~ 126 (178)
T PF02826_consen 92 ADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNV 126 (178)
T ss_dssp -SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEES
T ss_pred hhhhhhhhccccccceeeeeeeeeccccceEEEec
Confidence 456666666677777777777665544 55554
No 159
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.70 E-value=0.29 Score=54.58 Aligned_cols=163 Identities=15% Similarity=0.127 Sum_probs=82.1
Q ss_pred CcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCC------
Q 001747 431 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPR------ 504 (1018)
Q Consensus 431 ~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~------ 504 (1018)
++|.|||+|-+|+.++..|+..|. .++++|.+.=... + ++...+-..+.+.+...-
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~------~V~~~d~~~~~~~---~---------~~~~i~~~l~~~~~~g~~~~~~~~ 65 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY------DVVMVDISDAAVD---R---------GLATITKSLDRLVKKGKMTEADKE 65 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC------ceEEEeCCHHHHH---H---------HHHHHHHHHHHHHHcCCCCHHHHH
Confidence 479999999999999999999998 8999986532111 1 111111111111111100
Q ss_pred ---CeEEEEecccCCccccccccccccCccEEEEcc-cChhHHHHHHhhcccc--ccceEecccCCcccc-eEEEeCccc
Q 001747 505 ---LNIEALQNRVGPETENVFDDTFWENITCVINAL-DNVNARLYVDQRCLYF--QKPLLESGTLGAKCN-TQMVIPHLT 577 (1018)
Q Consensus 505 ---~~i~~~~~~~~~~~~~~~~~~~~~~~dvVi~al-Dn~~ar~~v~~~c~~~--~~pli~~g~~g~~g~-~~v~ip~~t 577 (1018)
.++... .+ + +-.+++|+||.|+ .+...+.-+-.....+ .-.+|.+.+.|..-. ..-..++..
T Consensus 66 ~~~~~l~~~-----~~----~--~~~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~ 134 (282)
T PRK05808 66 AALARITGT-----TD----L--DDLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPD 134 (282)
T ss_pred HHHhCeEEe-----CC----H--HHhccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCc
Confidence 011111 11 1 1257899999998 5555443222222111 122444555554433 111112212
Q ss_pred ccccCCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhccChh
Q 001747 578 ENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPA 623 (1018)
Q Consensus 578 ~~y~~~~~~~~~~~p~Ct~~~~P~~~~h~i~wAk~~f~~~F~~~~~ 623 (1018)
...++....|....|...+..-+......++.++.+|+ -++..+-
T Consensus 135 r~ig~h~~~P~~~~~~vev~~g~~t~~e~~~~~~~l~~-~lGk~pv 179 (282)
T PRK05808 135 KVIGMHFFNPVPVMKLVEIIRGLATSDATHEAVEALAK-KIGKTPV 179 (282)
T ss_pred ceEEeeccCCcccCccEEEeCCCCCCHHHHHHHHHHHH-HcCCeeE
Confidence 23333222222223344455557777888888888886 3555443
No 160
>PRK10637 cysG siroheme synthase; Provisional
Probab=93.56 E-value=0.18 Score=60.39 Aligned_cols=93 Identities=14% Similarity=0.099 Sum_probs=69.3
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCCe
Q 001747 427 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 506 (1018)
Q Consensus 427 ~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~~ 506 (1018)
.|++++|+|||.|.++..=++.|...|. +|+||-++. .+ .+.++-..-+
T Consensus 9 ~l~~~~vlvvGgG~vA~rk~~~ll~~ga------~v~visp~~------------~~-------------~~~~l~~~~~ 57 (457)
T PRK10637 9 QLRDRDCLLVGGGDVAERKARLLLDAGA------RLTVNALAF------------IP-------------QFTAWADAGM 57 (457)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEEcCCC------------CH-------------HHHHHHhCCC
Confidence 5789999999999999999999999997 899885441 11 1111111224
Q ss_pred EEEEecccCCccccccccccccCccEEEEcccChhHHHHHHhhccccccceE
Q 001747 507 IEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLL 558 (1018)
Q Consensus 507 i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~~~pli 558 (1018)
|+.+...+. +..++++++||.|+|+.+.-..+...|...++++-
T Consensus 58 i~~~~~~~~--------~~dl~~~~lv~~at~d~~~n~~i~~~a~~~~~lvN 101 (457)
T PRK10637 58 LTLVEGPFD--------ESLLDTCWLAIAATDDDAVNQRVSEAAEARRIFCN 101 (457)
T ss_pred EEEEeCCCC--------hHHhCCCEEEEECCCCHHHhHHHHHHHHHcCcEEE
Confidence 555554432 34568899999999999999999999999888764
No 161
>PLN00203 glutamyl-tRNA reductase
Probab=93.34 E-value=0.14 Score=61.90 Aligned_cols=75 Identities=15% Similarity=0.176 Sum_probs=52.5
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEec
Q 001747 31 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 110 (1018)
Q Consensus 31 L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~~ 110 (1018)
|.+++|+|+|+|++|..++++|...|+.++++++.+ ..|++..++.+ +.+.+.+...
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs-------------------~era~~La~~~----~g~~i~~~~~ 320 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRS-------------------EERVAALREEF----PDVEIIYKPL 320 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCC-------------------HHHHHHHHHHh----CCCceEeecH
Confidence 557999999999999999999999999999998742 12554444433 3333333221
Q ss_pred CCChhhccCCceEEEccc
Q 001747 111 KLTKEQLSDFQAVVFTDI 128 (1018)
Q Consensus 111 ~l~~~~~~~~dvVI~~~~ 128 (1018)
.-..+.+.++|+||.|+.
T Consensus 321 ~dl~~al~~aDVVIsAT~ 338 (519)
T PLN00203 321 DEMLACAAEADVVFTSTS 338 (519)
T ss_pred hhHHHHHhcCCEEEEccC
Confidence 111356789999998875
No 162
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=93.27 E-value=0.2 Score=55.83 Aligned_cols=75 Identities=21% Similarity=0.314 Sum_probs=53.1
Q ss_pred HhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCCeE
Q 001747 428 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNI 507 (1018)
Q Consensus 428 l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~~i 507 (1018)
+.+++++|+|+||.+..++..|+..|+ .+|+|+. |- ..|++-+++...+..+.+..
T Consensus 124 ~~~~~vlilGAGGAarAv~~aL~~~g~-----~~i~V~N----------Rt---------~~ra~~La~~~~~~~~~~~~ 179 (283)
T COG0169 124 VTGKRVLILGAGGAARAVAFALAEAGA-----KRITVVN----------RT---------RERAEELADLFGELGAAVEA 179 (283)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHcCC-----CEEEEEe----------CC---------HHHHHHHHHHhhhccccccc
Confidence 356899999999999999999999999 7999974 22 34777888877776652211
Q ss_pred EEEecccCCccccccccccccCccEEEEcc
Q 001747 508 EALQNRVGPETENVFDDTFWENITCVINAL 537 (1018)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~dvVi~al 537 (1018)
.... +.+ -...+|+||||+
T Consensus 180 ~~~~-----~~~------~~~~~dliINaT 198 (283)
T COG0169 180 AALA-----DLE------GLEEADLLINAT 198 (283)
T ss_pred cccc-----ccc------cccccCEEEECC
Confidence 1111 111 111689999997
No 163
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=93.24 E-value=0.056 Score=49.34 Aligned_cols=48 Identities=27% Similarity=0.451 Sum_probs=36.8
Q ss_pred CCCcHHHHHHHHHH-c-CCceeeeecCCceeecCCCcchhccccCcHHHH
Q 001747 931 DNPTLRELIQWLKD-K-GLNAYSISCGSCLLFNSMFPRHKERMDKKVVDL 978 (1018)
Q Consensus 931 ~~~Tl~~li~~~~~-~-~~~~~~i~~g~~~lY~~~~~~~~~~l~~~l~~l 978 (1018)
..+||++|++.+-+ + |+..+.|+.|..+||++......++++++|+++
T Consensus 7 ~~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~el 56 (87)
T PF14732_consen 7 KKMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSEL 56 (87)
T ss_dssp TT-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGG
T ss_pred hhCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHc
Confidence 47899999998755 5 999999999999999987544578999999999
No 164
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.12 E-value=0.37 Score=54.53 Aligned_cols=32 Identities=22% Similarity=0.405 Sum_probs=28.9
Q ss_pred CcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCC
Q 001747 431 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 468 (1018)
Q Consensus 431 ~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D 468 (1018)
++|.|||+|.+|+.++..|+..|. .++++|.+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~------~V~~~d~~ 36 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL------QVVLIDVM 36 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC------eEEEEECC
Confidence 479999999999999999999997 78898854
No 165
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=93.04 E-value=0.6 Score=50.48 Aligned_cols=105 Identities=19% Similarity=0.218 Sum_probs=65.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEecCCC
Q 001747 34 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLT 113 (1018)
Q Consensus 34 s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~~~l~ 113 (1018)
.+++|+|+|-+|..+|++|+..|- .++++|.+.- + +.+.++ ......++..+-+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~-------------------~---~~~~~~---~~~~~~~v~gd~t 54 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEE-------------------R---VEEFLA---DELDTHVVIGDAT 54 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHH-------------------H---HHHHhh---hhcceEEEEecCC
Confidence 479999999999999999999997 5666664321 1 111122 1123333333222
Q ss_pred ------hhhccCCceEEEcccCHHHHHHHHHHHHh-cCCCceeEEeeecce-eEEEEeecC
Q 001747 114 ------KEQLSDFQAVVFTDISLDKAIEFDDFCHN-HQPAISFIKAEVRGL-FGSVFCDFG 166 (1018)
Q Consensus 114 ------~~~~~~~dvVI~~~~~~~~~~~ln~~c~~-~~~~i~fi~~~~~G~-~G~vf~d~g 166 (1018)
+.-+.++|++|+++.+-.....+-.++.+ +| +|-+.+.+..- +..++...|
T Consensus 55 ~~~~L~~agi~~aD~vva~t~~d~~N~i~~~la~~~~g--v~~viar~~~~~~~~~~~~~g 113 (225)
T COG0569 55 DEDVLEEAGIDDADAVVAATGNDEVNSVLALLALKEFG--VPRVIARARNPEHEKVLEKLG 113 (225)
T ss_pred CHHHHHhcCCCcCCEEEEeeCCCHHHHHHHHHHHHhcC--CCcEEEEecCHHHHHHHHHcC
Confidence 22467899999988876666666666555 78 88887765443 334443333
No 166
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.03 E-value=0.089 Score=58.94 Aligned_cols=162 Identities=14% Similarity=0.149 Sum_probs=80.5
Q ss_pred CcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCccc--Cccc-ccccchHHHHHHHHHHhhCCCCeE
Q 001747 431 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQF--LFRD-WNIGQAKSTVAASAATSINPRLNI 507 (1018)
Q Consensus 431 ~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqf--lf~~-~diG~~Ka~va~~~l~~~np~~~i 507 (1018)
++|.|||+|.+|..++.+|+..|. +++++|.|.-....+.++. ++.. ...|.-. .....+....+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~------~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~i-- 69 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF------QTTLVDIKQEQLESAQQEIASIFEQGVARGKLT----EAARQAALARL-- 69 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC------cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC----HHHHHHHHhCe--
Confidence 479999999999999999999997 8999987643222221110 0000 0000000 00000111111
Q ss_pred EEEecccCCccccccccccccCccEEEEcccChh-HHHH----HHhhccccccce-EecccCCcccceEEEeCccccccc
Q 001747 508 EALQNRVGPETENVFDDTFWENITCVINALDNVN-ARLY----VDQRCLYFQKPL-LESGTLGAKCNTQMVIPHLTENYG 581 (1018)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~-ar~~----v~~~c~~~~~pl-i~~g~~g~~g~~~v~ip~~t~~y~ 581 (1018)
+.. .+ + .+..+++|+||.|+.+.. .+.. +.+.|. .+..+ ++++|....-... .........+
T Consensus 70 ~~~-----~~---~--~~~~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~-~~~il~~~tSt~~~~~l~~-~~~~~~r~~g 137 (288)
T PRK09260 70 SYS-----LD---L--KAAVADADLVIEAVPEKLELKKAVFETADAHAP-AECYIATNTSTMSPTEIAS-FTKRPERVIA 137 (288)
T ss_pred EEe-----Cc---H--HHhhcCCCEEEEeccCCHHHHHHHHHHHHhhCC-CCcEEEEcCCCCCHHHHHh-hcCCcccEEE
Confidence 111 00 0 234678999999987664 2322 233332 23333 4555544321111 1111111111
Q ss_pred CCC-CCCCCCCCcccccCCCCChhhHHHHHHHHhhhh
Q 001747 582 ASR-DPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGL 617 (1018)
Q Consensus 582 ~~~-~~~~~~~p~Ct~~~~P~~~~h~i~wAk~~f~~~ 617 (1018)
..- .|.. ..++.-+-.-|...+.++++++.+++.+
T Consensus 138 ~h~~~Pv~-~~~Lve~v~g~~t~~~~~~~~~~~l~~l 173 (288)
T PRK09260 138 MHFFNPVH-KMKLVELIRGLETSDETVQVAKEVAEQM 173 (288)
T ss_pred EecCCCcc-cCceEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 111 2332 3356666667778888999999988744
No 167
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=92.97 E-value=0.12 Score=53.17 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=30.1
Q ss_pred HHhcCcEEEEccCcc-hHHHHHHHHhcCcccCCCccEEEec
Q 001747 427 KLEDAKVFIVGSGAL-GCEFLKNVALMGVSCGNQGKLTITD 466 (1018)
Q Consensus 427 ~l~~~~v~vvG~Ggi-G~e~lk~La~~Gv~~~~~g~i~ivD 466 (1018)
.|.+++|+|||+|.+ |..++++|...|+ ++++++
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~------~V~v~~ 75 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA------TVTVCH 75 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCC------EEEEEE
Confidence 578999999999985 8889999999998 688876
No 168
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=92.95 E-value=0.36 Score=54.80 Aligned_cols=83 Identities=23% Similarity=0.229 Sum_probs=55.9
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEec
Q 001747 31 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 110 (1018)
Q Consensus 31 L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~~ 110 (1018)
+...+|+|+|+|.+|..++++|...|+..++++|.+. .|+...++.+. . .+... +
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~-------------------~ra~~la~~~g----~-~~~~~-~ 230 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTY-------------------ERAEELAKELG----G-NAVPL-D 230 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH-------------------HHHHHHHHHcC----C-eEEeH-H
Confidence 5789999999999999999999999999999998532 25544444432 1 11111 1
Q ss_pred CCChhhccCCceEEEcccCHHHHHHHHHH
Q 001747 111 KLTKEQLSDFQAVVFTDISLDKAIEFDDF 139 (1018)
Q Consensus 111 ~l~~~~~~~~dvVI~~~~~~~~~~~ln~~ 139 (1018)
+ ..+.+.++|+||.|+.+......+...
T Consensus 231 ~-~~~~l~~aDvVi~at~~~~~~~~~~~~ 258 (311)
T cd05213 231 E-LLELLNEADVVISATGAPHYAKIVERA 258 (311)
T ss_pred H-HHHHHhcCCEEEECCCCCchHHHHHHH
Confidence 1 124567899999998755443333333
No 169
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=92.87 E-value=0.36 Score=48.42 Aligned_cols=35 Identities=20% Similarity=0.340 Sum_probs=31.7
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeC
Q 001747 31 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDE 65 (1018)
Q Consensus 31 L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~ 65 (1018)
+...+|+|+|+|++|..+++.|...|...++++|.
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r 51 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNR 51 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcC
Confidence 56789999999999999999999998778999885
No 170
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=92.83 E-value=0.32 Score=55.31 Aligned_cols=76 Identities=17% Similarity=0.186 Sum_probs=53.7
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhcCC-EEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCc-EEEEEe
Q 001747 32 FASNILVSGMQGLGAEIAKNLILAGVK-SVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAV-VLSTLT 109 (1018)
Q Consensus 32 ~~s~VlIiG~gglG~eiaKnLvlaGVg-~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V-~v~~~~ 109 (1018)
+..||.|+|+|.+|+.+|-.|+..|+- .|.|+|- ...++++.+.-|+...|.. .+....
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~-------------------~~~~~~g~~~Dl~~~~~~~~~~~i~~ 65 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDI-------------------NKEKAEGDAMDLSHAVPFTSPTKIYA 65 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC-------------------CCchhHHHHHHHHhhccccCCeEEEe
Confidence 356999999999999999999999985 7999984 1235555556666655421 233332
Q ss_pred cCCChhhccCCceEEEccc
Q 001747 110 SKLTKEQLSDFQAVVFTDI 128 (1018)
Q Consensus 110 ~~l~~~~~~~~dvVI~~~~ 128 (1018)
. +.+.+++.|+||.+..
T Consensus 66 ~--~~~~~~~adivIitag 82 (315)
T PRK00066 66 G--DYSDCKDADLVVITAG 82 (315)
T ss_pred C--CHHHhCCCCEEEEecC
Confidence 2 2345889999998765
No 171
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=92.79 E-value=1.1 Score=42.45 Aligned_cols=87 Identities=23% Similarity=0.332 Sum_probs=59.0
Q ss_pred EEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEecCCC-h
Q 001747 36 ILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLT-K 114 (1018)
Q Consensus 36 VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~~~l~-~ 114 (1018)
|+|+|+|.+|.++++.|...| -.++++|.+.- + .+.+.+.. +.++..+.. +
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~-~~vvvid~d~~-------------------~----~~~~~~~~----~~~i~gd~~~~ 52 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG-IDVVVIDRDPE-------------------R----VEELREEG----VEVIYGDATDP 52 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT-SEEEEEESSHH-------------------H----HHHHHHTT----SEEEES-TTSH
T ss_pred eEEEcCCHHHHHHHHHHHhCC-CEEEEEECCcH-------------------H----HHHHHhcc----cccccccchhh
Confidence 689999999999999999955 68999996441 1 23333333 234444433 2
Q ss_pred -----hhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeE
Q 001747 115 -----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFI 150 (1018)
Q Consensus 115 -----~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi 150 (1018)
..+.+++.||++..+......+-..+++.++.++.+
T Consensus 53 ~~l~~a~i~~a~~vv~~~~~d~~n~~~~~~~r~~~~~~~ii 93 (116)
T PF02254_consen 53 EVLERAGIEKADAVVILTDDDEENLLIALLARELNPDIRII 93 (116)
T ss_dssp HHHHHTTGGCESEEEEESSSHHHHHHHHHHHHHHTTTSEEE
T ss_pred hHHhhcCccccCEEEEccCCHHHHHHHHHHHHHHCCCCeEE
Confidence 246788989988888788888888889866433433
No 172
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=92.70 E-value=0.3 Score=57.80 Aligned_cols=36 Identities=25% Similarity=0.421 Sum_probs=33.4
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeC
Q 001747 30 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDE 65 (1018)
Q Consensus 30 ~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~ 65 (1018)
.+.+.+|+|+|+|.+|..+++.|...|+.+++++|.
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~r 212 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANR 212 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeC
Confidence 367899999999999999999999999999999875
No 173
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=92.61 E-value=0.25 Score=58.16 Aligned_cols=38 Identities=21% Similarity=0.383 Sum_probs=33.6
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcc
Q 001747 427 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVI 470 (1018)
Q Consensus 427 ~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~I 470 (1018)
.+.+++|+|+|+|.+|..+++.|..+|+ +++++|.|..
T Consensus 209 ~l~Gk~VlViG~G~IG~~vA~~lr~~Ga------~ViV~d~dp~ 246 (425)
T PRK05476 209 LIAGKVVVVAGYGDVGKGCAQRLRGLGA------RVIVTEVDPI 246 (425)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEEcCCch
Confidence 3678999999999999999999999998 7999886653
No 174
>PRK04148 hypothetical protein; Provisional
Probab=92.51 E-value=1 Score=44.59 Aligned_cols=89 Identities=16% Similarity=0.132 Sum_probs=65.8
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEecC
Q 001747 32 FASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 111 (1018)
Q Consensus 32 ~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~~~ 111 (1018)
++.+|++||+| .|.++|..|...|. .++-+|-+.- .++. .++. .+++..++
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~~-------------------aV~~----a~~~----~~~~v~dD 66 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINEK-------------------AVEK----AKKL----GLNAFVDD 66 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCHH-------------------HHHH----HHHh----CCeEEECc
Confidence 34789999999 99999999999996 8888885321 2222 2222 13444444
Q ss_pred C---ChhhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEE
Q 001747 112 L---TKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIK 151 (1018)
Q Consensus 112 l---~~~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~ 151 (1018)
+ +.+..+++|+|-.+..+.+....+-+++++.+ .+++.
T Consensus 67 lf~p~~~~y~~a~liysirpp~el~~~~~~la~~~~--~~~~i 107 (134)
T PRK04148 67 LFNPNLEIYKNAKLIYSIRPPRDLQPFILELAKKIN--VPLII 107 (134)
T ss_pred CCCCCHHHHhcCCEEEEeCCCHHHHHHHHHHHHHcC--CCEEE
Confidence 3 34678899999999989999999999999999 76664
No 175
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=92.49 E-value=0.1 Score=56.50 Aligned_cols=38 Identities=26% Similarity=0.479 Sum_probs=34.7
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHhcCcccCCCc--cEEEecCCc
Q 001747 427 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQG--KLTITDDDV 469 (1018)
Q Consensus 427 ~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g--~i~ivD~D~ 469 (1018)
.+.+.+|+|+|+|+.|+.+++.|+..|+ . +|+++|.+-
T Consensus 22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~-----~~~~i~ivdr~g 61 (226)
T cd05311 22 KIEEVKIVINGAGAAGIAIARLLLAAGA-----KPENIVVVDSKG 61 (226)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHcCc-----CcceEEEEeCCC
Confidence 4778899999999999999999999999 6 899999763
No 176
>PRK04148 hypothetical protein; Provisional
Probab=92.26 E-value=0.71 Score=45.63 Aligned_cols=91 Identities=12% Similarity=0.186 Sum_probs=66.4
Q ss_pred hcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCCeEE
Q 001747 429 EDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIE 508 (1018)
Q Consensus 429 ~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~~i~ 508 (1018)
++.+++.||+| -|-++++.|+.+|. .++.+|.+.- .++.+ ++. .+.
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~------~ViaIDi~~~-------------------aV~~a----~~~----~~~ 61 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGF------DVIVIDINEK-------------------AVEKA----KKL----GLN 61 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCC------EEEEEECCHH-------------------HHHHH----HHh----CCe
Confidence 34689999999 99999999999997 8999975432 22222 221 133
Q ss_pred EEecccCCccccccccccccCccEEEEcccChhHHHHHHhhccccccceE
Q 001747 509 ALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLL 558 (1018)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~~~pli 558 (1018)
+....+...+ .++++++|+|...-=.++-...+-+.+.+.+.+++
T Consensus 62 ~v~dDlf~p~-----~~~y~~a~liysirpp~el~~~~~~la~~~~~~~~ 106 (134)
T PRK04148 62 AFVDDLFNPN-----LEIYKNAKLIYSIRPPRDLQPFILELAKKINVPLI 106 (134)
T ss_pred EEECcCCCCC-----HHHHhcCCEEEEeCCCHHHHHHHHHHHHHcCCCEE
Confidence 4444433222 35678999999998888888899999999998887
No 177
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=92.23 E-value=0.99 Score=50.99 Aligned_cols=71 Identities=23% Similarity=0.245 Sum_probs=51.9
Q ss_pred EEEEcCChHHHHHHHHHHHhcC-CEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCC---cEEEEEecC
Q 001747 36 ILVSGMQGLGAEIAKNLILAGV-KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNA---VVLSTLTSK 111 (1018)
Q Consensus 36 VlIiG~gglG~eiaKnLvlaGV-g~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~---V~v~~~~~~ 111 (1018)
|.|||+|.+|+.+|-.|+..|+ .+++|+|.+ +.|+++.+..|....+. +++... .
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~-------------------~~~~~g~~~DL~~~~~~~~~~~i~~~-~- 59 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVN-------------------EEKAKGDALDLSHASAFLATGTIVRG-G- 59 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------ccHHHHHHHhHHHhccccCCCeEEEC-C-
Confidence 5799999999999999999997 579999952 23566666667666553 344321 1
Q ss_pred CChhhccCCceEEEccc
Q 001747 112 LTKEQLSDFQAVVFTDI 128 (1018)
Q Consensus 112 l~~~~~~~~dvVI~~~~ 128 (1018)
+.+.+.+.|+||.|..
T Consensus 60 -~~~~l~~aDiVIitag 75 (300)
T cd00300 60 -DYADAADADIVVITAG 75 (300)
T ss_pred -CHHHhCCCCEEEEcCC
Confidence 2457889999998865
No 178
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.20 E-value=0.94 Score=50.72 Aligned_cols=33 Identities=30% Similarity=0.445 Sum_probs=29.8
Q ss_pred CcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCc
Q 001747 431 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 469 (1018)
Q Consensus 431 ~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~ 469 (1018)
.+|.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~------~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF------DVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC------eEEEEeCCH
Confidence 579999999999999999999997 899998653
No 179
>PF10585 UBA_e1_thiolCys: Ubiquitin-activating enzyme active site ; InterPro: IPR019572 Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin-conjugating enzymes (E2) []. This domain carries the last of five conserved cysteines that is part of the active site of the enzyme, responsible for ubiquitin thiolester complex formation, the active site being represented by the sequence motif PICTLKNFP []. Not all proteins in this entry contain a functional active site.; PDB: 3CMM_A 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B 2PX9_A 1Z7L_A 3GZN_D 3DBL_F 1R4N_H ....
Probab=92.14 E-value=0.13 Score=40.77 Aligned_cols=23 Identities=30% Similarity=0.647 Sum_probs=19.6
Q ss_pred hhcccchHHHHHHHHHHHHHHHH
Q 001747 660 KEKCEIFQDCITWARLKFEDYFS 682 (1018)
Q Consensus 660 ~~~~~~~~~ci~~a~~~f~~~F~ 682 (1018)
+..|.+.+.||+||+.+|+.+|.
T Consensus 23 r~~P~~~~HcI~wAk~~f~~~F~ 45 (45)
T PF10585_consen 23 RNFPRTPEHCIEWAKDLFEELFG 45 (45)
T ss_dssp HTS-SSHHHHHHHHHHHHHHHHT
T ss_pred hcCCCCchHHHHHHHHHHHHHhC
Confidence 45699999999999999999983
No 180
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=92.09 E-value=0.68 Score=52.39 Aligned_cols=33 Identities=27% Similarity=0.239 Sum_probs=29.3
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCC
Q 001747 33 ASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 66 (1018)
Q Consensus 33 ~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d 66 (1018)
..||+|+|+|++|+-++-.|..+|. .+++++..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGL-PVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCC-CeEEEEec
Confidence 4589999999999999999999996 78888863
No 181
>PLN02602 lactate dehydrogenase
Probab=91.89 E-value=0.45 Score=54.81 Aligned_cols=73 Identities=14% Similarity=0.188 Sum_probs=51.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcC-CEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCC---CcEEEEEe
Q 001747 34 SNILVSGMQGLGAEIAKNLILAGV-KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNN---AVVLSTLT 109 (1018)
Q Consensus 34 s~VlIiG~gglG~eiaKnLvlaGV-g~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp---~V~v~~~~ 109 (1018)
.+|.|||+|.+|+.+|-.|+..|+ +++.|+|-. +.++++.+.-|+...| .++|...
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~-------------------~~~~~g~a~DL~~~~~~~~~~~i~~~- 97 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVN-------------------PDKLRGEMLDLQHAAAFLPRTKILAS- 97 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC-------------------CchhhHHHHHHHhhhhcCCCCEEEeC-
Confidence 699999999999999999999998 579999852 1234444444444333 3444431
Q ss_pred cCCChhhccCCceEEEccc
Q 001747 110 SKLTKEQLSDFQAVVFTDI 128 (1018)
Q Consensus 110 ~~l~~~~~~~~dvVI~~~~ 128 (1018)
-+.+.+++.|+||.|..
T Consensus 98 --~dy~~~~daDiVVitAG 114 (350)
T PLN02602 98 --TDYAVTAGSDLCIVTAG 114 (350)
T ss_pred --CCHHHhCCCCEEEECCC
Confidence 23456889999999854
No 182
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.84 E-value=0.6 Score=52.90 Aligned_cols=71 Identities=14% Similarity=0.233 Sum_probs=51.0
Q ss_pred eEEEEcCChHHHHHHHHHHHhcC-CEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCC-----CcEEEEE
Q 001747 35 NILVSGMQGLGAEIAKNLILAGV-KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNN-----AVVLSTL 108 (1018)
Q Consensus 35 ~VlIiG~gglG~eiaKnLvlaGV-g~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp-----~V~v~~~ 108 (1018)
||.|||+|.+|+.+|-.|+..|+ +.+.|+|- -+.+|++-+.-|+...+ .+++.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di-------------------~~~~a~g~a~DL~~~~~~~~~~~~~i~-- 59 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDV-------------------NEGVAEGEALDFHHATALTYSTNTKIR-- 59 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC-------------------CcchhhHHHHHHHhhhccCCCCCEEEE--
Confidence 68999999999999999999998 67999984 12344444455555433 34444
Q ss_pred ecCCChhhccCCceEEEccc
Q 001747 109 TSKLTKEQLSDFQAVVFTDI 128 (1018)
Q Consensus 109 ~~~l~~~~~~~~dvVI~~~~ 128 (1018)
.. +.+.+++.|+||.|..
T Consensus 60 ~~--~y~~~~~aDivvitaG 77 (307)
T cd05290 60 AG--DYDDCADADIIVITAG 77 (307)
T ss_pred EC--CHHHhCCCCEEEECCC
Confidence 32 3567889999998865
No 183
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=91.81 E-value=0.43 Score=50.82 Aligned_cols=62 Identities=29% Similarity=0.487 Sum_probs=50.2
Q ss_pred hhcCeEEEE-cCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEe
Q 001747 31 LFASNILVS-GMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 109 (1018)
Q Consensus 31 L~~s~VlIi-G~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~ 109 (1018)
+.+++++++ |+||+|-+++|.|...|++.+.|.|... | -.+..+|++.||.+++-.+.
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~E----n-----------------~~a~akL~ai~p~~~v~F~~ 61 (261)
T KOG4169|consen 3 LTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEE----N-----------------PEAIAKLQAINPSVSVIFIK 61 (261)
T ss_pred ccCceEEEecCCchhhHHHHHHHHHcCchheeehhhhh----C-----------------HHHHHHHhccCCCceEEEEE
Confidence 457788888 5999999999999999998888876411 1 24566899999999999988
Q ss_pred cCCC
Q 001747 110 SKLT 113 (1018)
Q Consensus 110 ~~l~ 113 (1018)
.++.
T Consensus 62 ~DVt 65 (261)
T KOG4169|consen 62 CDVT 65 (261)
T ss_pred eccc
Confidence 7765
No 184
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=91.76 E-value=0.31 Score=49.63 Aligned_cols=91 Identities=21% Similarity=0.284 Sum_probs=53.7
Q ss_pred HHHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCC
Q 001747 426 KKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRL 505 (1018)
Q Consensus 426 ~~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~ 505 (1018)
-.|..++++|+|.|-+|.-+|+.|..+|. +++|+|-|.+ | +.++... ..
T Consensus 19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga------~V~V~e~DPi-------------------~---alqA~~d---Gf 67 (162)
T PF00670_consen 19 LMLAGKRVVVIGYGKVGKGIARALRGLGA------RVTVTEIDPI-------------------R---ALQAAMD---GF 67 (162)
T ss_dssp S--TTSEEEEE--SHHHHHHHHHHHHTT-------EEEEE-SSHH-------------------H---HHHHHHT---T-
T ss_pred eeeCCCEEEEeCCCcccHHHHHHHhhCCC------EEEEEECChH-------------------H---HHHhhhc---Cc
Confidence 35788899999999999999999999998 9999998886 1 2233322 22
Q ss_pred eEEEEecccCCccccccccccccCccEEEEcccChh--HHHHHHhhccccccceEeccc
Q 001747 506 NIEALQNRVGPETENVFDDTFWENITCVINALDNVN--ARLYVDQRCLYFQKPLLESGT 562 (1018)
Q Consensus 506 ~i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~--ar~~v~~~c~~~~~pli~~g~ 562 (1018)
++... ++.....|++|+|+.|.. ...++..+ +.+.-+.+.|.
T Consensus 68 ~v~~~-------------~~a~~~adi~vtaTG~~~vi~~e~~~~m--kdgail~n~Gh 111 (162)
T PF00670_consen 68 EVMTL-------------EEALRDADIFVTATGNKDVITGEHFRQM--KDGAILANAGH 111 (162)
T ss_dssp EEE-H-------------HHHTTT-SEEEE-SSSSSSB-HHHHHHS---TTEEEEESSS
T ss_pred EecCH-------------HHHHhhCCEEEECCCCccccCHHHHHHh--cCCeEEeccCc
Confidence 33221 234568899999998865 34555543 33444444443
No 185
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=91.74 E-value=0.49 Score=47.24 Aligned_cols=75 Identities=19% Similarity=0.271 Sum_probs=50.5
Q ss_pred CcEEEEcc-CcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCC--eE
Q 001747 431 AKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRL--NI 507 (1018)
Q Consensus 431 ~~v~vvG~-GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~--~i 507 (1018)
.||.|||+ |.+|+.++-.|++.|++ .+|+++|.+ ..|++..+.-+....+.. ++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~----~ei~L~D~~-------------------~~~~~g~a~Dl~~~~~~~~~~~ 57 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLA----DEIVLIDIN-------------------EDKAEGEALDLSHASAPLPSPV 57 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTS----SEEEEEESS-------------------HHHHHHHHHHHHHHHHGSTEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCC----CceEEeccC-------------------cccceeeehhhhhhhhhccccc
Confidence 38999999 99999999999999994 459998743 235555555555444333 23
Q ss_pred EEEecccCCccccccccccccCccEEEEccc
Q 001747 508 EALQNRVGPETENVFDDTFWENITCVINALD 538 (1018)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~dvVi~alD 538 (1018)
.... +. .+-+++.|+||.+..
T Consensus 58 ~i~~---~~-------~~~~~~aDivvitag 78 (141)
T PF00056_consen 58 RITS---GD-------YEALKDADIVVITAG 78 (141)
T ss_dssp EEEE---SS-------GGGGTTESEEEETTS
T ss_pred cccc---cc-------ccccccccEEEEecc
Confidence 2222 11 234678999998753
No 186
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=91.73 E-value=0.36 Score=54.85 Aligned_cols=81 Identities=23% Similarity=0.328 Sum_probs=54.5
Q ss_pred HhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCCeE
Q 001747 428 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNI 507 (1018)
Q Consensus 428 l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~~i 507 (1018)
+.+.+|+|+|+|.+|..+++.|...|. .+|+++|.+. .|+..+++.+ . . .+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~-----~~V~v~~r~~-------------------~ra~~la~~~---g-~-~~ 226 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGV-----AEITIANRTY-------------------ERAEELAKEL---G-G-NA 226 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCC-----CEEEEEeCCH-------------------HHHHHHHHHc---C-C-eE
Confidence 678999999999999999999999888 7899886542 2444444433 1 1 11
Q ss_pred EEEecccCCccccccccccccCccEEEEcccChhHHHHHH
Q 001747 508 EALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVD 547 (1018)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~ 547 (1018)
..+ . .. .+.+..+|+||.|+-+......+.
T Consensus 227 ~~~----~----~~--~~~l~~aDvVi~at~~~~~~~~~~ 256 (311)
T cd05213 227 VPL----D----EL--LELLNEADVVISATGAPHYAKIVE 256 (311)
T ss_pred EeH----H----HH--HHHHhcCCEEEECCCCCchHHHHH
Confidence 111 0 11 233567999999998887633333
No 187
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.71 E-value=0.5 Score=53.64 Aligned_cols=74 Identities=15% Similarity=0.171 Sum_probs=51.6
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhcCC-EEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCC---CcEEEEE
Q 001747 33 ASNILVSGMQGLGAEIAKNLILAGVK-SVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNN---AVVLSTL 108 (1018)
Q Consensus 33 ~s~VlIiG~gglG~eiaKnLvlaGVg-~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp---~V~v~~~ 108 (1018)
..||.|||+|.+|+.+|-.|+..|+. ++.|+|... .+++..+.-|+...| ..+|...
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~-------------------~~~~g~a~Dl~~~~~~~~~~~v~~~ 63 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE-------------------DKLKGEAMDLQHGSAFLKNPKIEAD 63 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc-------------------cHHHHHHHHHHHhhccCCCCEEEEC
Confidence 46899999999999999999999985 699998521 244444555555443 2344332
Q ss_pred ecCCChhhccCCceEEEccc
Q 001747 109 TSKLTKEQLSDFQAVVFTDI 128 (1018)
Q Consensus 109 ~~~l~~~~~~~~dvVI~~~~ 128 (1018)
. +.+.+++.|+||.|..
T Consensus 64 ~---dy~~~~~adivvitaG 80 (312)
T cd05293 64 K---DYSVTANSKVVIVTAG 80 (312)
T ss_pred C---CHHHhCCCCEEEECCC
Confidence 1 3345899999998754
No 188
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=91.69 E-value=0.2 Score=54.15 Aligned_cols=38 Identities=26% Similarity=0.455 Sum_probs=35.4
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhcCC--EEEEEeCCc
Q 001747 30 RLFASNILVSGMQGLGAEIAKNLILAGVK--SVTLHDEGT 67 (1018)
Q Consensus 30 ~L~~s~VlIiG~gglG~eiaKnLvlaGVg--~itlvD~d~ 67 (1018)
.+++.+|+|+|+|+.|..|++.|...|++ +|+|+|.+-
T Consensus 22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 57889999999999999999999999999 999999863
No 189
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=91.68 E-value=0.18 Score=57.39 Aligned_cols=90 Identities=20% Similarity=0.279 Sum_probs=61.0
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccc-cccCcccCcccccccchHHHHHHHHHHhhCCCC
Q 001747 427 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEK-SNLSRQFLFRDWNIGQAKSTVAASAATSINPRL 505 (1018)
Q Consensus 427 ~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~-sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~ 505 (1018)
.|.+++|.|||+|.||..+++-|...|+ ++...|.-.-.. .....-+ ....+.++-+..
T Consensus 139 el~gkTvGIiG~G~IG~~va~~l~afgm------~v~~~d~~~~~~~~~~~~~~--------------~~~~Ld~lL~~s 198 (324)
T COG0111 139 ELAGKTVGIIGLGRIGRAVAKRLKAFGM------KVIGYDPYSPRERAGVDGVV--------------GVDSLDELLAEA 198 (324)
T ss_pred cccCCEEEEECCCHHHHHHHHHHHhCCC------eEEEECCCCchhhhccccce--------------ecccHHHHHhhC
Confidence 6789999999999999999999999999 888888632211 1100000 012233334456
Q ss_pred eEEEEecccCCccccccccccccCc---cEEEEc
Q 001747 506 NIEALQNRVGPETENVFDDTFWENI---TCVINA 536 (1018)
Q Consensus 506 ~i~~~~~~~~~~~~~~~~~~~~~~~---dvVi~a 536 (1018)
.|...+..++++|.++++.+.|... -++|||
T Consensus 199 Div~lh~PlT~eT~g~i~~~~~a~MK~gailIN~ 232 (324)
T COG0111 199 DILTLHLPLTPETRGLINAEELAKMKPGAILINA 232 (324)
T ss_pred CEEEEcCCCCcchhcccCHHHHhhCCCCeEEEEC
Confidence 7777778888888888777665444 277776
No 190
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=91.62 E-value=0.37 Score=54.52 Aligned_cols=34 Identities=29% Similarity=0.582 Sum_probs=29.6
Q ss_pred CcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCC
Q 001747 431 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 468 (1018)
Q Consensus 431 ~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D 468 (1018)
+||.|||+|++|+.++..|+..|+. .+|+++|.+
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~----~ei~l~D~~ 34 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIA----DELVLIDIN 34 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCC----CEEEEEeCC
Confidence 3799999999999999999999982 389999753
No 191
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=91.53 E-value=0.24 Score=50.58 Aligned_cols=31 Identities=29% Similarity=0.535 Sum_probs=25.9
Q ss_pred CcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecC
Q 001747 431 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 467 (1018)
Q Consensus 431 ~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~ 467 (1018)
++|.+||+|..|+.++++|+..|. .+++.|.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~------~v~~~d~ 32 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGY------EVTVYDR 32 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTT------EEEEEES
T ss_pred CEEEEEchHHHHHHHHHHHHhcCC------eEEeecc
Confidence 479999999999999999999998 7888763
No 192
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=91.43 E-value=1.3 Score=40.66 Aligned_cols=78 Identities=15% Similarity=0.256 Sum_probs=48.7
Q ss_pred eEEEEcCChHHHHHHHHHHHhcC--CEEEEE-eCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEecC
Q 001747 35 NILVSGMQGLGAEIAKNLILAGV--KSVTLH-DEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 111 (1018)
Q Consensus 35 ~VlIiG~gglG~eiaKnLvlaGV--g~itlv-D~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~~~ 111 (1018)
||.|||+|.+|..+++.|+.+|+ .++.++ +.+ ..|+ +++.+..+ +.+...
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~-------------------~~~~----~~~~~~~~-~~~~~~--- 53 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRS-------------------PEKA----AELAKEYG-VQATAD--- 53 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESS-------------------HHHH----HHHHHHCT-TEEESE---
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCc-------------------HHHH----HHHHHhhc-cccccC---
Confidence 68999999999999999999994 344433 321 1122 33434444 222211
Q ss_pred CChhhccCCceEEEcccCHHHHHHHHHH
Q 001747 112 LTKEQLSDFQAVVFTDISLDKAIEFDDF 139 (1018)
Q Consensus 112 l~~~~~~~~dvVI~~~~~~~~~~~ln~~ 139 (1018)
-..+.++..|+||+|..+......+.++
T Consensus 54 ~~~~~~~~advvilav~p~~~~~v~~~i 81 (96)
T PF03807_consen 54 DNEEAAQEADVVILAVKPQQLPEVLSEI 81 (96)
T ss_dssp EHHHHHHHTSEEEE-S-GGGHHHHHHHH
T ss_pred ChHHhhccCCEEEEEECHHHHHHHHHHH
Confidence 1345677899999999877766666666
No 193
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=91.28 E-value=0.63 Score=54.69 Aligned_cols=36 Identities=17% Similarity=0.326 Sum_probs=31.9
Q ss_pred HhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCc
Q 001747 428 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 469 (1018)
Q Consensus 428 l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~ 469 (1018)
+.+.+|+|+|+|.+|..+++.+..+|+ +++++|.|.
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga------~ViV~d~d~ 235 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGA------RVIVTEVDP 235 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEEECCh
Confidence 567899999999999999999999998 688887654
No 194
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.14 E-value=0.31 Score=54.44 Aligned_cols=34 Identities=24% Similarity=0.307 Sum_probs=30.7
Q ss_pred HHhcCcEEEEccCc-chHHHHHHHHhcCcccCCCccEEEec
Q 001747 427 KLEDAKVFIVGSGA-LGCEFLKNVALMGVSCGNQGKLTITD 466 (1018)
Q Consensus 427 ~l~~~~v~vvG~Gg-iG~e~lk~La~~Gv~~~~~g~i~ivD 466 (1018)
.+.+++|+|+|+|+ +|..++..|...|. .+++++
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga------tVtv~~ 190 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANA------TVTICH 190 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCC------EEEEEe
Confidence 57888999999999 99999999999997 788875
No 195
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=91.01 E-value=0.51 Score=53.67 Aligned_cols=75 Identities=21% Similarity=0.317 Sum_probs=49.6
Q ss_pred cCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCC-eEE
Q 001747 430 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRL-NIE 508 (1018)
Q Consensus 430 ~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~-~i~ 508 (1018)
..||.|||||.+|+.++-.|+..|+. ..|.++|- .+.|++..+.-+....|.. ++.
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~----~el~L~D~-------------------~~~~~~g~~~Dl~~~~~~~~~~~ 62 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIA----DELVIIDI-------------------NKEKAEGDAMDLSHAVPFTSPTK 62 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCC----CEEEEEeC-------------------CCchhHHHHHHHHhhccccCCeE
Confidence 46999999999999999999999983 47999864 2334555555555554322 222
Q ss_pred EEecccCCccccccccccccCccEEEEcc
Q 001747 509 ALQNRVGPETENVFDDTFWENITCVINAL 537 (1018)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~dvVi~al 537 (1018)
... ++ + +-++++|+||.+.
T Consensus 63 i~~---~~-----~--~~~~~adivIita 81 (315)
T PRK00066 63 IYA---GD-----Y--SDCKDADLVVITA 81 (315)
T ss_pred EEe---CC-----H--HHhCCCCEEEEec
Confidence 221 11 1 2368899888774
No 196
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=90.74 E-value=0.87 Score=51.96 Aligned_cols=79 Identities=18% Similarity=0.161 Sum_probs=50.4
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEec
Q 001747 31 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 110 (1018)
Q Consensus 31 L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~~ 110 (1018)
++..||.|||+|.+|+.+|-.++..|+..+.|+|-+.-.. .| ++..............+|....
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~-------------~~--~~ld~~~~~~~~~~~~~I~~~~- 67 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIP-------------QG--KALDISHSNVIAGSNSKVIGTN- 67 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchh-------------hH--HHHHHHhhhhccCCCeEEEECC-
Confidence 3457999999999999999999999987799999633110 01 1111111222222334555322
Q ss_pred CCChhhccCCceEEEcc
Q 001747 111 KLTKEQLSDFQAVVFTD 127 (1018)
Q Consensus 111 ~l~~~~~~~~dvVI~~~ 127 (1018)
+.+.+++.|+||.|.
T Consensus 68 --d~~~l~~aDiVI~ta 82 (321)
T PTZ00082 68 --NYEDIAGSDVVIVTA 82 (321)
T ss_pred --CHHHhCCCCEEEECC
Confidence 224678999999865
No 197
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=90.74 E-value=0.4 Score=54.45 Aligned_cols=87 Identities=16% Similarity=0.208 Sum_probs=57.2
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCCe
Q 001747 427 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 506 (1018)
Q Consensus 427 ~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~~ 506 (1018)
.|.+++|.|||.|.||.++++.+.-.|+ +|..+|.-.-. + +.|-.. ..+.++.+...
T Consensus 142 ~L~gktvGIiG~G~IG~~vA~~~~~fgm------~V~~~d~~~~~-----~-------~~~~~~-----~~l~ell~~sD 198 (311)
T PRK08410 142 EIKGKKWGIIGLGTIGKRVAKIAQAFGA------KVVYYSTSGKN-----K-------NEEYER-----VSLEELLKTSD 198 (311)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhhcCC------EEEEECCCccc-----c-------ccCcee-----ecHHHHhhcCC
Confidence 6889999999999999999999988887 78888762110 0 111101 12334444566
Q ss_pred EEEEecccCCccccccccccccCcc---EEEEc
Q 001747 507 IEALQNRVGPETENVFDDTFWENIT---CVINA 536 (1018)
Q Consensus 507 i~~~~~~~~~~~~~~~~~~~~~~~d---vVi~a 536 (1018)
+.......+++|.++++.+.|+..- ++||+
T Consensus 199 vv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~ 231 (311)
T PRK08410 199 IISIHAPLNEKTKNLIAYKELKLLKDGAILINV 231 (311)
T ss_pred EEEEeCCCCchhhcccCHHHHHhCCCCeEEEEC
Confidence 7777777777777777766665432 55554
No 198
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.73 E-value=0.57 Score=53.07 Aligned_cols=32 Identities=22% Similarity=0.535 Sum_probs=28.8
Q ss_pred cEEEEccCcchHHHHHHHHhcCcccCCCccEEEecC
Q 001747 432 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 467 (1018)
Q Consensus 432 ~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~ 467 (1018)
||.|||+|.+|+.++-.|+..|++ +.|.|+|-
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~----~elvL~Di 32 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLF----SEIVLIDV 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCC----CEEEEEeC
Confidence 689999999999999999999985 68999973
No 199
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=90.68 E-value=0.56 Score=60.90 Aligned_cols=105 Identities=15% Similarity=0.220 Sum_probs=63.9
Q ss_pred HhcCcEEEEccCcchHHHHHHHHhcCccc-----CC---CccEEEecCCcccccccCcccCcccccccchHHHHHHHHHH
Q 001747 428 LEDAKVFIVGSGALGCEFLKNVALMGVSC-----GN---QGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAT 499 (1018)
Q Consensus 428 l~~~~v~vvG~GgiG~e~lk~La~~Gv~~-----~~---~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~ 499 (1018)
-+.++|+|+|||.+|..+++.|++.+-.. +. .-.++|.|.+ ..+++.+++.
T Consensus 567 ~~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~-------------------~~~a~~la~~-- 625 (1042)
T PLN02819 567 KKSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLY-------------------LKDAKETVEG-- 625 (1042)
T ss_pred ccCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCC-------------------HHHHHHHHHh--
Confidence 34679999999999999999999864210 00 0125555543 2233333332
Q ss_pred hhCCCCeEEEEecccCCccccccccccccCccEEEEcccChhHHHHHHhhccccccceEecc
Q 001747 500 SINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESG 561 (1018)
Q Consensus 500 ~~np~~~i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~~~pli~~g 561 (1018)
.|++. +..-.+.+ .+.+ .+++++.|+||+|+-. ..-..+...|.++++++++..
T Consensus 626 --~~~~~--~v~lDv~D-~e~L--~~~v~~~DaVIsalP~-~~H~~VAkaAieaGkHvv~ek 679 (1042)
T PLN02819 626 --IENAE--AVQLDVSD-SESL--LKYVSQVDVVISLLPA-SCHAVVAKACIELKKHLVTAS 679 (1042)
T ss_pred --cCCCc--eEEeecCC-HHHH--HHhhcCCCEEEECCCc-hhhHHHHHHHHHcCCCEEECc
Confidence 34432 22222322 1222 2345789999999965 344668889999999998653
No 200
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=90.58 E-value=0.25 Score=56.06 Aligned_cols=35 Identities=26% Similarity=0.388 Sum_probs=30.6
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecC
Q 001747 427 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 467 (1018)
Q Consensus 427 ~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~ 467 (1018)
.+.+++|.|||.|.||.++++.|...|+ +++.+|.
T Consensus 133 ~l~g~tvgIvG~G~IG~~vA~~l~afG~------~V~~~~~ 167 (312)
T PRK15469 133 HREDFTIGILGAGVLGSKVAQSLQTWGF------PLRCWSR 167 (312)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEEeC
Confidence 3567899999999999999999999998 7777764
No 201
>PRK13243 glyoxylate reductase; Reviewed
Probab=90.58 E-value=0.34 Score=55.60 Aligned_cols=35 Identities=14% Similarity=0.287 Sum_probs=31.7
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecC
Q 001747 427 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 467 (1018)
Q Consensus 427 ~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~ 467 (1018)
.|.+++|.|||.|.||.++++.|...|+ ++..+|.
T Consensus 147 ~L~gktvgIiG~G~IG~~vA~~l~~~G~------~V~~~d~ 181 (333)
T PRK13243 147 DVYGKTIGIIGFGRIGQAVARRAKGFGM------RILYYSR 181 (333)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCC------EEEEECC
Confidence 5789999999999999999999999987 7888875
No 202
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=90.55 E-value=1 Score=47.30 Aligned_cols=78 Identities=17% Similarity=0.129 Sum_probs=51.9
Q ss_pred HhhcCeEEEEcC-ChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEE
Q 001747 30 RLFASNILVSGM-QGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTL 108 (1018)
Q Consensus 30 ~L~~s~VlIiG~-gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~ 108 (1018)
.+++++|+|+|. |++|..+++.|+..| .++++++.+ ..|++..++.+.+.. .+.+...
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g-~~V~l~~R~-------------------~~~~~~l~~~l~~~~-~~~~~~~ 83 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREG-ARVVLVGRD-------------------LERAQKAADSLRARF-GEGVGAV 83 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCC-------------------HHHHHHHHHHHHhhc-CCcEEEe
Confidence 467899999996 999999999999988 489988643 235666666665332 2333332
Q ss_pred ec-CCC--hhhccCCceEEEccc
Q 001747 109 TS-KLT--KEQLSDFQAVVFTDI 128 (1018)
Q Consensus 109 ~~-~l~--~~~~~~~dvVI~~~~ 128 (1018)
.. +.. .+.+.++|+||.++.
T Consensus 84 ~~~~~~~~~~~~~~~diVi~at~ 106 (194)
T cd01078 84 ETSDDAARAAAIKGADVVFAAGA 106 (194)
T ss_pred eCCCHHHHHHHHhcCCEEEECCC
Confidence 11 111 145678888887764
No 203
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=90.47 E-value=0.65 Score=48.77 Aligned_cols=83 Identities=14% Similarity=0.162 Sum_probs=52.9
Q ss_pred HHhcCcEEEEcc-CcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCC
Q 001747 427 KLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRL 505 (1018)
Q Consensus 427 ~l~~~~v~vvG~-GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~ 505 (1018)
.+++++++|+|+ |++|..+++.|+..|. ++++++.+ ..|++.+++.+.... ..
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~------~V~l~~R~-------------------~~~~~~l~~~l~~~~-~~ 78 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREGA------RVVLVGRD-------------------LERAQKAADSLRARF-GE 78 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC------EEEEEcCC-------------------HHHHHHHHHHHHhhc-CC
Confidence 467789999996 9999999999999875 78887543 235555666554322 23
Q ss_pred eEEEEecccCCccccccccccccCccEEEEcccCh
Q 001747 506 NIEALQNRVGPETENVFDDTFWENITCVINALDNV 540 (1018)
Q Consensus 506 ~i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~ 540 (1018)
.+.... ... .+.+ .+.+.++|+||+|+-..
T Consensus 79 ~~~~~~--~~~-~~~~--~~~~~~~diVi~at~~g 108 (194)
T cd01078 79 GVGAVE--TSD-DAAR--AAAIKGADVVFAAGAAG 108 (194)
T ss_pred cEEEee--CCC-HHHH--HHHHhcCCEEEECCCCC
Confidence 333321 111 1111 24567899999997533
No 204
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=90.45 E-value=0.81 Score=51.64 Aligned_cols=112 Identities=19% Similarity=0.208 Sum_probs=67.8
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhh-CCCcEEEEEecC-C
Q 001747 35 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQEL-NNAVVLSTLTSK-L 112 (1018)
Q Consensus 35 ~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~el-Np~V~v~~~~~~-l 112 (1018)
+|.|||+|.+|..++++|...|. +++++|.+.-....+. +.|-..+....+.+... ++++-+...... .
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~-~v~v~dr~~~~~~~~~--------~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~ 72 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGH-EVVGYDRNPEAVEALA--------EEGATGADSLEELVAKLPAPRVVWLMVPAGEI 72 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHH--------HCCCeecCCHHHHHhhcCCCCEEEEEecCCcH
Confidence 79999999999999999999996 6889987642222211 01211111122222322 455555555433 1
Q ss_pred Ch-------hhccCCceEEEccc-CHHHHHHHHHHHHhcCCCceeEEeeecce
Q 001747 113 TK-------EQLSDFQAVVFTDI-SLDKAIEFDDFCHNHQPAISFIKAEVRGL 157 (1018)
Q Consensus 113 ~~-------~~~~~~dvVI~~~~-~~~~~~~ln~~c~~~~~~i~fi~~~~~G~ 157 (1018)
.+ ..+..-++||.+.. +.....++.+.+++.+ +.|+.+.+.|.
T Consensus 73 ~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g--~~~~dapvsG~ 123 (301)
T PRK09599 73 TDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKG--IHFVDVGTSGG 123 (301)
T ss_pred HHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcC--CEEEeCCCCcC
Confidence 11 12334467776643 5556667788889999 88887766654
No 205
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.44 E-value=0.92 Score=54.65 Aligned_cols=95 Identities=19% Similarity=0.239 Sum_probs=61.5
Q ss_pred HHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEE
Q 001747 26 ETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVL 105 (1018)
Q Consensus 26 ~~q~~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v 105 (1018)
++...+..++|+|+|+|+.|..+++.|...|. .+++.|.+. .+. .+.+.++ .+.
T Consensus 8 ~~~~~~~~~~v~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~-------------------~~~---~~~l~~~--gi~- 61 (473)
T PRK00141 8 SALPQELSGRVLVAGAGVSGRGIAAMLSELGC-DVVVADDNE-------------------TAR---HKLIEVT--GVA- 61 (473)
T ss_pred hhcccccCCeEEEEccCHHHHHHHHHHHHCCC-EEEEECCCh-------------------HHH---HHHHHhc--CcE-
Confidence 44456677899999999999999999999998 899988431 011 1112221 333
Q ss_pred EEEecCCChhhccCCceEEEccc-CHHHHHHHHHHHHhcCCCceeEE
Q 001747 106 STLTSKLTKEQLSDFQAVVFTDI-SLDKAIEFDDFCHNHQPAISFIK 151 (1018)
Q Consensus 106 ~~~~~~l~~~~~~~~dvVI~~~~-~~~~~~~ln~~c~~~~~~i~fi~ 151 (1018)
.....-.++.+.++|+||.+.. +.. . ..-..+++++ ||++.
T Consensus 62 -~~~~~~~~~~~~~~d~vV~Spgi~~~-~-p~~~~a~~~g--i~v~~ 103 (473)
T PRK00141 62 -DISTAEASDQLDSFSLVVTSPGWRPD-S-PLLVDAQSQG--LEVIG 103 (473)
T ss_pred -EEeCCCchhHhcCCCEEEeCCCCCCC-C-HHHHHHHHCC--Cceee
Confidence 3333333456778999998754 221 1 2233567888 88875
No 206
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=90.32 E-value=0.81 Score=50.80 Aligned_cols=34 Identities=15% Similarity=0.283 Sum_probs=29.2
Q ss_pred HhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecC
Q 001747 428 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 467 (1018)
Q Consensus 428 l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~ 467 (1018)
..+++++|+|+||+|..++..|+..|. +++++|.
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L~~~g~------~v~v~~R 148 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPLLKADC------NVIIANR 148 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHCCC------EEEEEeC
Confidence 356789999999999999999999886 7888753
No 207
>PTZ00117 malate dehydrogenase; Provisional
Probab=90.21 E-value=0.75 Score=52.41 Aligned_cols=35 Identities=20% Similarity=0.212 Sum_probs=32.1
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCC
Q 001747 32 FASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 66 (1018)
Q Consensus 32 ~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d 66 (1018)
.+.+|.|||+|.+|..++-.|++.|+..+.|+|-+
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~ 38 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVI 38 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECC
Confidence 56799999999999999999999998899999963
No 208
>PRK06487 glycerate dehydrogenase; Provisional
Probab=90.21 E-value=0.42 Score=54.40 Aligned_cols=35 Identities=23% Similarity=0.398 Sum_probs=31.1
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecC
Q 001747 427 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 467 (1018)
Q Consensus 427 ~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~ 467 (1018)
.|.+++|.|||.|.||.++++.|.-.|+ ++..+|.
T Consensus 145 ~l~gktvgIiG~G~IG~~vA~~l~~fgm------~V~~~~~ 179 (317)
T PRK06487 145 ELEGKTLGLLGHGELGGAVARLAEAFGM------RVLIGQL 179 (317)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhhCCC------EEEEECC
Confidence 5889999999999999999999998887 7777764
No 209
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=90.12 E-value=0.62 Score=54.58 Aligned_cols=37 Identities=24% Similarity=0.357 Sum_probs=32.9
Q ss_pred HhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcc
Q 001747 428 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVI 470 (1018)
Q Consensus 428 l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~I 470 (1018)
+.+++|+|+|+|.+|..+++.+..+|+ +++++|.|..
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga------~ViV~d~dp~ 229 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGA------RVIVTEVDPI 229 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcC------EEEEEeCChh
Confidence 678899999999999999999999998 7899986654
No 210
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.93 E-value=1.5 Score=52.65 Aligned_cols=97 Identities=18% Similarity=0.127 Sum_probs=61.4
Q ss_pred HHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEE
Q 001747 29 RRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTL 108 (1018)
Q Consensus 29 ~~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~ 108 (1018)
.-+.+++|+|+|.|+.|..+|+-|...|. .+++.|...... .....+.|.+.. +.+ .
T Consensus 10 ~~~~~~~i~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~~~~------------------~~~~~~~l~~~g--i~~--~ 66 (458)
T PRK01710 10 KFIKNKKVAVVGIGVSNIPLIKFLVKLGA-KVTAFDKKSEEE------------------LGEVSNELKELG--VKL--V 66 (458)
T ss_pred hhhcCCeEEEEcccHHHHHHHHHHHHCCC-EEEEECCCCCcc------------------chHHHHHHHhCC--CEE--E
Confidence 44567899999999999999999999997 799988643110 001112343332 233 2
Q ss_pred ecCCChhhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEE
Q 001747 109 TSKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIK 151 (1018)
Q Consensus 109 ~~~l~~~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~ 151 (1018)
.....++.+.++|+||.+.. ......+-..+++.+ ||++.
T Consensus 67 ~~~~~~~~~~~~dlVV~Spg-i~~~~p~~~~a~~~~--i~i~s 106 (458)
T PRK01710 67 LGENYLDKLDGFDVIFKTPS-MRIDSPELVKAKEEG--AYITS 106 (458)
T ss_pred eCCCChHHhccCCEEEECCC-CCCCchHHHHHHHcC--CcEEe
Confidence 23323456788999998753 111123344567888 99874
No 211
>PRK07574 formate dehydrogenase; Provisional
Probab=89.89 E-value=0.32 Score=56.69 Aligned_cols=35 Identities=40% Similarity=0.564 Sum_probs=31.9
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecC
Q 001747 427 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 467 (1018)
Q Consensus 427 ~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~ 467 (1018)
.|.+++|.|||.|.||.++++.|...|+ +++.+|.
T Consensus 189 ~L~gktVGIvG~G~IG~~vA~~l~~fG~------~V~~~dr 223 (385)
T PRK07574 189 DLEGMTVGIVGAGRIGLAVLRRLKPFDV------KLHYTDR 223 (385)
T ss_pred ecCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEECC
Confidence 5889999999999999999999999998 7888774
No 212
>PRK06197 short chain dehydrogenase; Provisional
Probab=89.83 E-value=0.62 Score=52.43 Aligned_cols=37 Identities=16% Similarity=0.265 Sum_probs=30.8
Q ss_pred HHHhcCcEEEEc-cCcchHHHHHHHHhcCcccCCCccEEEecCC
Q 001747 426 KKLEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDD 468 (1018)
Q Consensus 426 ~~l~~~~v~vvG-~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D 468 (1018)
..+.+++|+|.| .||||.++++.|+..|. ++++++.+
T Consensus 12 ~~~~~k~vlItGas~gIG~~~a~~l~~~G~------~vi~~~r~ 49 (306)
T PRK06197 12 PDQSGRVAVVTGANTGLGYETAAALAAKGA------HVVLAVRN 49 (306)
T ss_pred ccCCCCEEEEcCCCCcHHHHHHHHHHHCCC------EEEEEeCC
Confidence 456778899998 59999999999999997 67777653
No 213
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=89.72 E-value=0.5 Score=56.01 Aligned_cols=73 Identities=25% Similarity=0.340 Sum_probs=50.8
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEec
Q 001747 31 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 110 (1018)
Q Consensus 31 L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~~ 110 (1018)
+.+.+|+|+|+|++|..+++.|...|+..++++|.+. .|+...++.+. . .+... .
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~-------------------~ra~~la~~~g----~-~~~~~-~ 234 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTL-------------------ERAEELAEEFG----G-EAIPL-D 234 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCH-------------------HHHHHHHHHcC----C-cEeeH-H
Confidence 6789999999999999999999999999999987532 24444443331 1 11111 1
Q ss_pred CCChhhccCCceEEEcccC
Q 001747 111 KLTKEQLSDFQAVVFTDIS 129 (1018)
Q Consensus 111 ~l~~~~~~~~dvVI~~~~~ 129 (1018)
.+ .+.+.++|+||.|+.+
T Consensus 235 ~~-~~~l~~aDvVI~aT~s 252 (423)
T PRK00045 235 EL-PEALAEADIVISSTGA 252 (423)
T ss_pred HH-HHHhccCCEEEECCCC
Confidence 11 2456789999998764
No 214
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=89.71 E-value=0.62 Score=45.06 Aligned_cols=110 Identities=16% Similarity=0.157 Sum_probs=60.6
Q ss_pred cEEEEc-cCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCCeEEEE
Q 001747 432 KVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEAL 510 (1018)
Q Consensus 432 ~v~vvG-~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~~i~~~ 510 (1018)
||.||| .|.+|.++++.|+..=-. ..+.++.... ..|++=+.... .......+...
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~----e~~~~~~~~~---------------~~g~~~~~~~~----~~~~~~~~~~~ 57 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDF----ELVALVSSSR---------------SAGKPLSEVFP----HPKGFEDLSVE 57 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTE----EEEEEEESTT---------------TTTSBHHHTTG----GGTTTEEEBEE
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCc----cEEEeeeecc---------------ccCCeeehhcc----ccccccceeEe
Confidence 799999 999999999999983210 2223332221 13332111111 11111111111
Q ss_pred ecccCCccccccccccccCccEEEEcccChhHHHHHHhhccccccceEeccc-CCcccceEEEeCc
Q 001747 511 QNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGT-LGAKCNTQMVIPH 575 (1018)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~~~pli~~g~-~g~~g~~~v~ip~ 575 (1018)
. .+.+.+++.|+||.|+++-.++.+.... ...+.++|+.+. .-+...+...+|.
T Consensus 58 ~----------~~~~~~~~~Dvvf~a~~~~~~~~~~~~~-~~~g~~ViD~s~~~R~~~~~~~~~pe 112 (121)
T PF01118_consen 58 D----------ADPEELSDVDVVFLALPHGASKELAPKL-LKAGIKVIDLSGDFRLDDDVPYGLPE 112 (121)
T ss_dssp E----------TSGHHHTTESEEEE-SCHHHHHHHHHHH-HHTTSEEEESSSTTTTSTTSEEE-HH
T ss_pred e----------cchhHhhcCCEEEecCchhHHHHHHHHH-hhCCcEEEeCCHHHhCCCCCCEEeCC
Confidence 1 1233458999999999999888887766 778888886443 3333334444443
No 215
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=89.56 E-value=0.57 Score=54.43 Aligned_cols=87 Identities=21% Similarity=0.325 Sum_probs=56.5
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCCe
Q 001747 427 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 506 (1018)
Q Consensus 427 ~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~~ 506 (1018)
.|.+++|.|||+|.||..+++.|...|+ ++...|+-.-+. .+.+. ...+.++-+...
T Consensus 113 ~L~gktvGIIG~G~IG~~vA~~l~a~G~------~V~~~dp~~~~~-----------~~~~~------~~~L~ell~~sD 169 (378)
T PRK15438 113 SLHDRTVGIVGVGNVGRRLQARLEALGI------KTLLCDPPRADR-----------GDEGD------FRSLDELVQEAD 169 (378)
T ss_pred CcCCCEEEEECcCHHHHHHHHHHHHCCC------EEEEECCccccc-----------ccccc------cCCHHHHHhhCC
Confidence 5789999999999999999999999998 888888532110 00000 011223333456
Q ss_pred EEEEecccCCc----cccccccccccCc---cEEEEc
Q 001747 507 IEALQNRVGPE----TENVFDDTFWENI---TCVINA 536 (1018)
Q Consensus 507 i~~~~~~~~~~----~~~~~~~~~~~~~---dvVi~a 536 (1018)
|...+..++++ |.++++.++++.. -++||+
T Consensus 170 iI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~ 206 (378)
T PRK15438 170 ILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINA 206 (378)
T ss_pred EEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEEC
Confidence 66666666664 6677776666544 366666
No 216
>PRK06932 glycerate dehydrogenase; Provisional
Probab=89.53 E-value=0.54 Score=53.48 Aligned_cols=35 Identities=20% Similarity=0.412 Sum_probs=30.8
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecC
Q 001747 427 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 467 (1018)
Q Consensus 427 ~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~ 467 (1018)
.|.+++|.|||.|.||.++++.|.-.|+ +++.+|.
T Consensus 144 ~l~gktvgIiG~G~IG~~va~~l~~fg~------~V~~~~~ 178 (314)
T PRK06932 144 DVRGSTLGVFGKGCLGTEVGRLAQALGM------KVLYAEH 178 (314)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhcCCC------EEEEECC
Confidence 5889999999999999999999998887 6776653
No 217
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=89.51 E-value=1.9 Score=45.69 Aligned_cols=36 Identities=22% Similarity=0.410 Sum_probs=32.0
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCC
Q 001747 30 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 66 (1018)
Q Consensus 30 ~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d 66 (1018)
.|++++|+|+|+|.+|..++++|...|. +++++|.+
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~ 60 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADIN 60 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 4788999999999999999999999997 77788754
No 218
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=89.49 E-value=1.2 Score=49.19 Aligned_cols=34 Identities=18% Similarity=0.423 Sum_probs=27.0
Q ss_pred CcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecC
Q 001747 431 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 467 (1018)
Q Consensus 431 ~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~ 467 (1018)
.+|.|||+|.+|..++..|...|.. ...+.++|.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~---~~~v~v~~r 36 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVP---AKDIIVSDP 36 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCC---cceEEEEcC
Confidence 5799999999999999999998841 135666653
No 219
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=89.24 E-value=1.2 Score=51.05 Aligned_cols=75 Identities=17% Similarity=0.174 Sum_probs=55.4
Q ss_pred cCeEEEEcCChHHHHHHHHHH-HhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEecC
Q 001747 33 ASNILVSGMQGLGAEIAKNLI-LAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 111 (1018)
Q Consensus 33 ~s~VlIiG~gglG~eiaKnLv-laGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~~~ 111 (1018)
.++|+|+|+|+.|...++.|. ..|+.+++|++.+ ..|+++.++++.+..+ +++.... +
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~-------------------~~~a~~~a~~~~~~~g-~~v~~~~-~ 187 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWARD-------------------SAKAEALALQLSSLLG-IDVTAAT-D 187 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCC-------------------HHHHHHHHHHHHhhcC-ceEEEeC-C
Confidence 468999999999999999997 5889999998742 2478888888765432 4443332 1
Q ss_pred CChhhccCCceEEEcccC
Q 001747 112 LTKEQLSDFQAVVFTDIS 129 (1018)
Q Consensus 112 l~~~~~~~~dvVI~~~~~ 129 (1018)
-++.+.++|+||.|+.+
T Consensus 188 -~~~av~~aDiVvtaT~s 204 (326)
T TIGR02992 188 -PRAAMSGADIIVTTTPS 204 (326)
T ss_pred -HHHHhccCCEEEEecCC
Confidence 23467899999998754
No 220
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.19 E-value=1.5 Score=52.74 Aligned_cols=94 Identities=20% Similarity=0.128 Sum_probs=59.5
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEec
Q 001747 31 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 110 (1018)
Q Consensus 31 L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~~ 110 (1018)
+...+|+|+|.|++|.++|..|...|. +++++|.... ..+....+.|.+.+ +.+..-.
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~~~------------------~~~~~~~~~l~~~g--v~~~~~~- 71 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDGDD------------------ERHRALAAILEALG--ATVRLGP- 71 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCch------------------hhhHHHHHHHHHcC--CEEEECC-
Confidence 567799999999999999999999998 6999986421 12223344555543 4443211
Q ss_pred CCChhhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEE
Q 001747 111 KLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIK 151 (1018)
Q Consensus 111 ~l~~~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~ 151 (1018)
... ....+|+||.+..-.+. ..+-..+++.| +|++.
T Consensus 72 ~~~--~~~~~D~Vv~s~Gi~~~-~~~~~~a~~~g--i~v~~ 107 (480)
T PRK01438 72 GPT--LPEDTDLVVTSPGWRPD-APLLAAAADAG--IPVWG 107 (480)
T ss_pred Ccc--ccCCCCEEEECCCcCCC-CHHHHHHHHCC--Ceecc
Confidence 111 34568999987652121 12334567888 88763
No 221
>PRK05854 short chain dehydrogenase; Provisional
Probab=89.16 E-value=0.82 Score=51.78 Aligned_cols=35 Identities=20% Similarity=0.427 Sum_probs=29.3
Q ss_pred HhcCcEEEEc-cCcchHHHHHHHHhcCcccCCCccEEEecCC
Q 001747 428 LEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDD 468 (1018)
Q Consensus 428 l~~~~v~vvG-~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D 468 (1018)
+.+++++|.| .||||.++++.|++.|. ++++++.+
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G~------~Vil~~R~ 47 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAGA------EVILPVRN 47 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC------EEEEEeCC
Confidence 5677888888 78899999999999997 78777643
No 222
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=89.13 E-value=0.98 Score=45.86 Aligned_cols=104 Identities=17% Similarity=0.236 Sum_probs=59.3
Q ss_pred cEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCCeEEEEe
Q 001747 432 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQ 511 (1018)
Q Consensus 432 ~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~~i~~~~ 511 (1018)
||.|+|+|..|+.++..|+..|. ++++...|.=....++.+-- -....|++++.. .
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~------~V~l~~~~~~~~~~i~~~~~-----------------n~~~~~~~~l~~-~ 56 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGH------EVTLWGRDEEQIEEINETRQ-----------------NPKYLPGIKLPE-N 56 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTE------EEEEETSCHHHHHHHHHHTS-----------------ETTTSTTSBEET-T
T ss_pred CEEEECcCHHHHHHHHHHHHcCC------EEEEEeccHHHHHHHHHhCC-----------------CCCCCCCcccCc-c
Confidence 68999999999999999999996 88888776511111111000 001123322211 0
Q ss_pred cccCCccccccccccccCccEEEEcccChhHHHHHHhhccc--cccceEecccCCc
Q 001747 512 NRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLY--FQKPLLESGTLGA 565 (1018)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~--~~~pli~~g~~g~ 565 (1018)
..++.+- .+.+++.|+|+-|+=...-|.++.++... .+.++| +-+-|+
T Consensus 57 i~~t~dl-----~~a~~~ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii-~~~KG~ 106 (157)
T PF01210_consen 57 IKATTDL-----EEALEDADIIIIAVPSQAHREVLEQLAPYLKKGQIII-SATKGF 106 (157)
T ss_dssp EEEESSH-----HHHHTT-SEEEE-S-GGGHHHHHHHHTTTSHTT-EEE-ETS-SE
T ss_pred cccccCH-----HHHhCcccEEEecccHHHHHHHHHHHhhccCCCCEEE-EecCCc
Confidence 1111111 24568899999999888888888877654 445555 333344
No 223
>PRK08618 ornithine cyclodeaminase; Validated
Probab=89.08 E-value=1.2 Score=50.93 Aligned_cols=146 Identities=15% Similarity=0.102 Sum_probs=83.3
Q ss_pred cccCchhhhhhhhhhhhHhhhhcCC------cccc-c-eeeeeecCCCCCCCCCCCCCCCCccCchhhhhhhcCHHHHHH
Q 001747 356 AVLNPMAAMFGGIVGQEVVKACSGK------FHPL-Y-QFFYFDSVESLPTEPLDSTEFKPINSRYDAQISVFGAKLQKK 427 (1018)
Q Consensus 356 ~el~pvaA~iGGiaAQEVIK~iT~k------f~Pi-~-n~~~fD~~e~l~~~~~~~~~~~~~~~rydrq~~~~G~~~q~~ 427 (1018)
+.++.|.+.++|.- --.+|.++.- -.|- + ..++||.-++.|-.-++...+.. -|-- -....+.....+
T Consensus 49 ~~~~~mp~~~~~~~-~~g~K~~~~~p~n~~~glp~~~g~i~l~d~~tG~p~a~~d~~~lT~--~RTa-a~sala~~~la~ 124 (325)
T PRK08618 49 NTSLIMPGYAEGLE-ALGLKIVSVVPENKKKGKPTIPGTVILSDFETGEVLAILDGTYLTQ--IRTG-ALSGVATKYLAR 124 (325)
T ss_pred CcEEEeeeecCCCC-eEEEEEEeecCCCcccCCCcceEEEEEEeCCCCceEEEEccchhhh--hhHH-HHHHHHHHHhcC
Confidence 45566666666421 1247877642 2332 2 47788888777754333322211 0100 001122233333
Q ss_pred HhcCcEEEEccCcchHHHHHHHH-hcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCCe
Q 001747 428 LEDAKVFIVGSGALGCEFLKNVA-LMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 506 (1018)
Q Consensus 428 l~~~~v~vvG~GgiG~e~lk~La-~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~~ 506 (1018)
-..++++|||+|+.|-..+..++ ..|+ .++.|+|.+ ..|++.+++.+.... .++
T Consensus 125 ~~~~~v~iiGaG~~a~~~~~al~~~~~~-----~~v~v~~r~-------------------~~~a~~~~~~~~~~~-~~~ 179 (325)
T PRK08618 125 EDAKTLCLIGTGGQAKGQLEAVLAVRDI-----ERVRVYSRT-------------------FEKAYAFAQEIQSKF-NTE 179 (325)
T ss_pred CCCcEEEEECCcHHHHHHHHHHHhcCCc-----cEEEEECCC-------------------HHHHHHHHHHHHHhc-CCc
Confidence 45678999999999999998875 5688 889988644 336666677665433 233
Q ss_pred EEEEecccCCccccccccccccCccEEEEcccCh
Q 001747 507 IEALQNRVGPETENVFDDTFWENITCVINALDNV 540 (1018)
Q Consensus 507 i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~ 540 (1018)
+..+.. . .+...++|+|++|+-+.
T Consensus 180 ~~~~~~-----~-----~~~~~~aDiVi~aT~s~ 203 (325)
T PRK08618 180 IYVVNS-----A-----DEAIEEADIIVTVTNAK 203 (325)
T ss_pred EEEeCC-----H-----HHHHhcCCEEEEccCCC
Confidence 333311 1 23457899999998544
No 224
>PLN00203 glutamyl-tRNA reductase
Probab=89.07 E-value=0.54 Score=56.95 Aligned_cols=35 Identities=23% Similarity=0.535 Sum_probs=31.4
Q ss_pred HhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecC
Q 001747 428 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 467 (1018)
Q Consensus 428 l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~ 467 (1018)
|.+++|+|||+|.+|..+++.|...|+ .+|++++.
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~-----~~V~V~nR 298 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGC-----TKMVVVNR 298 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCC-----CeEEEEeC
Confidence 667899999999999999999999998 78988753
No 225
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=89.03 E-value=2 Score=52.06 Aligned_cols=157 Identities=13% Similarity=0.116 Sum_probs=80.4
Q ss_pred CcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCC--C---C
Q 001747 431 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINP--R---L 505 (1018)
Q Consensus 431 ~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np--~---~ 505 (1018)
++|.|||+|.+|+.++.+|+..|. .+++.|.+.=....+.+. ...+.+.+..+-. . -
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~------~V~v~D~~~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~~g 66 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGI------DVAVFDPHPEAERIIGEV------------LANAERAYAMLTDAPLPPEG 66 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC------eEEEEeCCHHHHHHHHHH------------HHHHHHHHhhhccchhhhhh
Confidence 479999999999999999999998 899998753222111100 0000001100000 0 0
Q ss_pred eEEEEecccCCccccccccccccCccEEEEcccCh-hHHHH----HHhhccccccceEecccCCcccc-eEEEeCccccc
Q 001747 506 NIEALQNRVGPETENVFDDTFWENITCVINALDNV-NARLY----VDQRCLYFQKPLLESGTLGAKCN-TQMVIPHLTEN 579 (1018)
Q Consensus 506 ~i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~-~ar~~----v~~~c~~~~~pli~~g~~g~~g~-~~v~ip~~t~~ 579 (1018)
+++. ..+. .+..+++|+|+.|+=.. +.+.. +...|. ...+|.+.|.|..-. .+-..+....+
T Consensus 67 ~i~~-----~~~~-----~ea~~~aD~Vieavpe~~~vk~~l~~~l~~~~~--~~~iI~SsTsgi~~s~l~~~~~~~~r~ 134 (495)
T PRK07531 67 RLTF-----CASL-----AEAVAGADWIQESVPERLDLKRRVLAEIDAAAR--PDALIGSSTSGFLPSDLQEGMTHPERL 134 (495)
T ss_pred ceEe-----eCCH-----HHHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCC--CCcEEEEcCCCCCHHHHHhhcCCcceE
Confidence 1111 1110 23467899999887544 23332 232221 224677888775422 11111222233
Q ss_pred ccCCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhh
Q 001747 580 YGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGL 617 (1018)
Q Consensus 580 y~~~~~~~~~~~p~Ct~~~~P~~~~h~i~wAk~~f~~~ 617 (1018)
+...+-.|....|+--+-.-|..-+..+++++.+|+.+
T Consensus 135 ~~~hP~nP~~~~~Lvevv~g~~t~~e~~~~~~~~~~~l 172 (495)
T PRK07531 135 FVAHPYNPVYLLPLVELVGGGKTSPETIRRAKEILREI 172 (495)
T ss_pred EEEecCCCcccCceEEEcCCCCCCHHHHHHHHHHHHHc
Confidence 33322212223344444445555677889999988754
No 226
>PRK07063 short chain dehydrogenase; Provisional
Probab=88.98 E-value=1 Score=49.06 Aligned_cols=64 Identities=20% Similarity=0.264 Sum_probs=44.4
Q ss_pred HHhcCcEEEEc-cCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCC
Q 001747 427 KLEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRL 505 (1018)
Q Consensus 427 ~l~~~~v~vvG-~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~ 505 (1018)
++.+++++|.| .||||.++++.|+..|. +++++|.+ ..+.+.+++.+...++..
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~------~vv~~~r~-------------------~~~~~~~~~~~~~~~~~~ 58 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGA------AVALADLD-------------------AALAERAAAAIARDVAGA 58 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEeCC-------------------HHHHHHHHHHHHhccCCc
Confidence 46788999998 68999999999999998 78877632 224444555555544455
Q ss_pred eEEEEecccC
Q 001747 506 NIEALQNRVG 515 (1018)
Q Consensus 506 ~i~~~~~~~~ 515 (1018)
++..+...+.
T Consensus 59 ~~~~~~~Dl~ 68 (260)
T PRK07063 59 RVLAVPADVT 68 (260)
T ss_pred eEEEEEccCC
Confidence 5666655554
No 227
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=88.95 E-value=2.2 Score=47.87 Aligned_cols=33 Identities=30% Similarity=0.464 Sum_probs=29.9
Q ss_pred CcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCc
Q 001747 431 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 469 (1018)
Q Consensus 431 ~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~ 469 (1018)
++|.|||+|.+|+.++..|+..|. .++++|.+.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~------~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM------DVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC------eEEEEeCCH
Confidence 579999999999999999999997 899998654
No 228
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=88.91 E-value=1.5 Score=42.70 Aligned_cols=94 Identities=18% Similarity=0.301 Sum_probs=57.3
Q ss_pred eEEEEcC-ChHHHHHHHHHHH-hcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhC-CCcEEEEEecC
Q 001747 35 NILVSGM-QGLGAEIAKNLIL-AGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELN-NAVVLSTLTSK 111 (1018)
Q Consensus 35 ~VlIiG~-gglG~eiaKnLvl-aGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elN-p~V~v~~~~~~ 111 (1018)
||.|+|+ |-+|.++++.+.. .|+.=...+|...- +.. ..|+| .+..+. ..+.+. .+
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~---~~~------g~d~g---------~~~~~~~~~~~v~---~~ 60 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPS---AKV------GKDVG---------ELAGIGPLGVPVT---DD 60 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTS---TTT------TSBCH---------HHCTSST-SSBEB---S-
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCc---ccc------cchhh---------hhhCcCCcccccc---hh
Confidence 7999999 9999999999998 78766777776541 111 12333 122222 122222 11
Q ss_pred CChhhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEEee
Q 001747 112 LTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAE 153 (1018)
Q Consensus 112 l~~~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~~~ 153 (1018)
+ ++.+...||||+.+ ..+.....-++|.+++ +|+|.+.
T Consensus 61 l-~~~~~~~DVvIDfT-~p~~~~~~~~~~~~~g--~~~ViGT 98 (124)
T PF01113_consen 61 L-EELLEEADVVIDFT-NPDAVYDNLEYALKHG--VPLVIGT 98 (124)
T ss_dssp H-HHHTTH-SEEEEES--HHHHHHHHHHHHHHT---EEEEE-
T ss_pred H-HHhcccCCEEEEcC-ChHHhHHHHHHHHhCC--CCEEEEC
Confidence 2 34555689999888 5566667778888888 8888743
No 229
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=88.89 E-value=1.3 Score=49.15 Aligned_cols=72 Identities=14% Similarity=0.242 Sum_probs=48.1
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEecC
Q 001747 32 FASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 111 (1018)
Q Consensus 32 ~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~~~ 111 (1018)
.+++|+|+|+||+|..++..|...|. +++++|.+ ..|++..++.+.+. +.+. .. .
T Consensus 116 ~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R~-------------------~~~~~~la~~~~~~-~~~~--~~--~ 170 (270)
T TIGR00507 116 PNQRVLIIGAGGAARAVALPLLKADC-NVIIANRT-------------------VSKAEELAERFQRY-GEIQ--AF--S 170 (270)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHhhc-CceE--Ee--c
Confidence 46789999999999999999999996 89998742 23666666666443 2111 11 1
Q ss_pred CChhhccCCceEEEccc
Q 001747 112 LTKEQLSDFQAVVFTDI 128 (1018)
Q Consensus 112 l~~~~~~~~dvVI~~~~ 128 (1018)
+.+..+.++|+||.|+.
T Consensus 171 ~~~~~~~~~DivInatp 187 (270)
T TIGR00507 171 MDELPLHRVDLIINATS 187 (270)
T ss_pred hhhhcccCccEEEECCC
Confidence 22222346788887763
No 230
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=88.79 E-value=1.2 Score=49.12 Aligned_cols=128 Identities=20% Similarity=0.270 Sum_probs=75.0
Q ss_pred CcEEEEcc-CcchHHHHHHHHhc-CcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCCeEE
Q 001747 431 AKVFIVGS-GALGCEFLKNVALM-GVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIE 508 (1018)
Q Consensus 431 ~~v~vvG~-GgiG~e~lk~La~~-Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~~i~ 508 (1018)
.||.|+|| |.+|..+++.+... ++ --..++|.+.- ...+. ....+.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~-----elvav~d~~~~---~~~~~------------------------~~~~i~ 49 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDL-----ELVAAVDRPGS---PLVGQ------------------------GALGVA 49 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCC-----EEEEEEecCCc---ccccc------------------------CCCCcc
Confidence 48999999 99999999988764 55 33445665421 11100 001111
Q ss_pred EEecccCCccccccccccccCccEEEEcccChhHHHHHHhhccccccceEecccCCcccceEEEeCcccccccCCCCCCC
Q 001747 509 ALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPE 588 (1018)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~~~pli~~g~~g~~g~~~v~ip~~t~~y~~~~~~~~ 588 (1018)
. ..+- ++.+..+|+||+++ ++.+-..+...|.++++|++ .|+.|+.-.- .+-. .. ..
T Consensus 50 ~-----~~dl-----~~ll~~~DvVid~t-~p~~~~~~~~~al~~G~~vv-igttG~s~~~-------~~~l---~~-aa 106 (257)
T PRK00048 50 I-----TDDL-----EAVLADADVLIDFT-TPEATLENLEFALEHGKPLV-IGTTGFTEEQ-------LAEL---EE-AA 106 (257)
T ss_pred c-----cCCH-----HHhccCCCEEEECC-CHHHHHHHHHHHHHcCCCEE-EECCCCCHHH-------HHHH---HH-Hh
Confidence 1 1111 22345799999998 66666778889999999999 5577764220 0000 01 11
Q ss_pred CCCCcccccCCCCChhhHHHHHHHH
Q 001747 589 KQAPMCTVHSFPHNIDHCLTWARSE 613 (1018)
Q Consensus 589 ~~~p~Ct~~~~P~~~~h~i~wAk~~ 613 (1018)
+..|+....+|-..+.--.+.++..
T Consensus 107 ~~~~v~~s~n~s~g~~~~~~l~~~a 131 (257)
T PRK00048 107 KKIPVVIAPNFSIGVNLLMKLAEKA 131 (257)
T ss_pred cCCCEEEECcchHHHHHHHHHHHHH
Confidence 3456666666766666666665553
No 231
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=88.79 E-value=1.2 Score=42.38 Aligned_cols=85 Identities=18% Similarity=0.246 Sum_probs=57.0
Q ss_pred EEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCCeEEEEec
Q 001747 433 VFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQN 512 (1018)
Q Consensus 433 v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~~i~~~~~ 512 (1018)
|+|+|+|.+|-++++.|...|. .++++|.|.-. .+.+.... +..+..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~------~vvvid~d~~~-----------------------~~~~~~~~----~~~i~g 47 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGI------DVVVIDRDPER-----------------------VEELREEG----VEVIYG 47 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTS------EEEEEESSHHH-----------------------HHHHHHTT----SEEEES
T ss_pred eEEEcCCHHHHHHHHHHHhCCC------EEEEEECCcHH-----------------------HHHHHhcc----cccccc
Confidence 6899999999999999999664 89999987531 12222222 224444
Q ss_pred ccCCccccccccccccCccEEEEcccChhHHHHHHhhccc
Q 001747 513 RVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLY 552 (1018)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~ 552 (1018)
.... ...+...-+++++.|+.++++...-..+...++.
T Consensus 48 d~~~--~~~l~~a~i~~a~~vv~~~~~d~~n~~~~~~~r~ 85 (116)
T PF02254_consen 48 DATD--PEVLERAGIEKADAVVILTDDDEENLLIALLARE 85 (116)
T ss_dssp -TTS--HHHHHHTTGGCESEEEEESSSHHHHHHHHHHHHH
T ss_pred cchh--hhHHhhcCccccCEEEEccCCHHHHHHHHHHHHH
Confidence 3332 2233344567899999999999888777777766
No 232
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.79 E-value=1.6 Score=49.00 Aligned_cols=33 Identities=30% Similarity=0.360 Sum_probs=30.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCc
Q 001747 34 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 67 (1018)
Q Consensus 34 s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~ 67 (1018)
++|.|||+|..|..+|.+++++|. .++++|.+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~ 38 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTE 38 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCH
Confidence 489999999999999999999998 799999754
No 233
>PRK09242 tropinone reductase; Provisional
Probab=88.75 E-value=1.3 Score=48.08 Aligned_cols=65 Identities=18% Similarity=0.297 Sum_probs=46.9
Q ss_pred HHhcCcEEEEc-cCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCC
Q 001747 427 KLEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRL 505 (1018)
Q Consensus 427 ~l~~~~v~vvG-~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~ 505 (1018)
++.+++++|+| .|+||.++++.|+..|. ++++++.+. .+.+.+.+.+...+|+.
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~------~v~~~~r~~-------------------~~~~~~~~~l~~~~~~~ 60 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGA------DVLIVARDA-------------------DALAQARDELAEEFPER 60 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCC------EEEEEeCCH-------------------HHHHHHHHHHHhhCCCC
Confidence 46778999998 48999999999999997 788876431 23344555666666777
Q ss_pred eEEEEecccCC
Q 001747 506 NIEALQNRVGP 516 (1018)
Q Consensus 506 ~i~~~~~~~~~ 516 (1018)
++..+...+..
T Consensus 61 ~~~~~~~Dl~~ 71 (257)
T PRK09242 61 EVHGLAADVSD 71 (257)
T ss_pred eEEEEECCCCC
Confidence 77777666553
No 234
>PRK06197 short chain dehydrogenase; Provisional
Probab=88.74 E-value=1.3 Score=49.84 Aligned_cols=42 Identities=26% Similarity=0.328 Sum_probs=33.6
Q ss_pred cCHHHHHHhhcCeEEEEcC-ChHHHHHHHHHHHhcCCEEEEEeC
Q 001747 23 YGRETMRRLFASNILVSGM-QGLGAEIAKNLILAGVKSVTLHDE 65 (1018)
Q Consensus 23 ~G~~~q~~L~~s~VlIiG~-gglG~eiaKnLvlaGVg~itlvD~ 65 (1018)
|+...+..+.+++|+|.|+ ||+|.++++.|+..|. ++.+++.
T Consensus 6 ~~~~~~~~~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r 48 (306)
T PRK06197 6 WTAADIPDQSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVR 48 (306)
T ss_pred CCccccccCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeC
Confidence 4544556678889999984 8999999999999997 6767654
No 235
>PLN03139 formate dehydrogenase; Provisional
Probab=88.66 E-value=0.4 Score=55.90 Aligned_cols=35 Identities=29% Similarity=0.409 Sum_probs=31.8
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecC
Q 001747 427 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 467 (1018)
Q Consensus 427 ~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~ 467 (1018)
.|.+++|.|||+|.||..+++.|..+|+ +++.+|.
T Consensus 196 ~L~gktVGIVG~G~IG~~vA~~L~afG~------~V~~~d~ 230 (386)
T PLN03139 196 DLEGKTVGTVGAGRIGRLLLQRLKPFNC------NLLYHDR 230 (386)
T ss_pred CCCCCEEEEEeecHHHHHHHHHHHHCCC------EEEEECC
Confidence 5889999999999999999999999998 7777775
No 236
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=88.61 E-value=0.51 Score=54.96 Aligned_cols=35 Identities=23% Similarity=0.433 Sum_probs=32.2
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecC
Q 001747 427 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 467 (1018)
Q Consensus 427 ~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~ 467 (1018)
.|.+++|.|||+|.||..+++.|...|+ ++.+.|.
T Consensus 113 ~l~gktvGIIG~G~IG~~va~~l~a~G~------~V~~~Dp 147 (381)
T PRK00257 113 DLAERTYGVVGAGHVGGRLVRVLRGLGW------KVLVCDP 147 (381)
T ss_pred CcCcCEEEEECCCHHHHHHHHHHHHCCC------EEEEECC
Confidence 4788999999999999999999999998 8888886
No 237
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=88.60 E-value=0.43 Score=47.67 Aligned_cols=29 Identities=28% Similarity=0.618 Sum_probs=25.7
Q ss_pred EEEEccCcchHHHHHHHHhcCcccCCCccEEEecC
Q 001747 433 VFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 467 (1018)
Q Consensus 433 v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~ 467 (1018)
|+|+|+|++|+-++-.|++.|. .+++++.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~------~V~l~~r 29 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH------DVTLVSR 29 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC------EEEEEES
T ss_pred CEEECcCHHHHHHHHHHHHCCC------ceEEEEc
Confidence 7899999999999999999987 7777753
No 238
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=88.49 E-value=0.89 Score=51.87 Aligned_cols=76 Identities=13% Similarity=0.167 Sum_probs=50.2
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHhcC-C-----EEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhC-CCcE-
Q 001747 34 SNILVSGM-QGLGAEIAKNLILAGV-K-----SVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELN-NAVV- 104 (1018)
Q Consensus 34 s~VlIiG~-gglG~eiaKnLvlaGV-g-----~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elN-p~V~- 104 (1018)
.||.|+|+ |.+|+.+|-.|+..|+ + ++.|+|-.. .+.++++.+.-|.... |...
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~-----------------~~~~a~g~a~Dl~~~~~~~~~~ 66 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPP-----------------AMKALEGVAMELEDCAFPLLAG 66 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCC-----------------cccccchHHHHHhhccccccCC
Confidence 58999998 9999999999999997 4 699988521 1123333344444444 3322
Q ss_pred EEEEecCCChhhccCCceEEEccc
Q 001747 105 LSTLTSKLTKEQLSDFQAVVFTDI 128 (1018)
Q Consensus 105 v~~~~~~l~~~~~~~~dvVI~~~~ 128 (1018)
+++.. -+.+.+++.|+||.|..
T Consensus 67 ~~i~~--~~~~~~~daDvVVitAG 88 (323)
T TIGR01759 67 VVATT--DPEEAFKDVDAALLVGA 88 (323)
T ss_pred cEEec--ChHHHhCCCCEEEEeCC
Confidence 22221 23467889999998865
No 239
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=88.42 E-value=0.53 Score=42.67 Aligned_cols=39 Identities=28% Similarity=0.474 Sum_probs=34.0
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcc
Q 001747 427 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVI 470 (1018)
Q Consensus 427 ~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~I 470 (1018)
.+..++++|+|+|+.|..++..|...|. .+++++|.|.+
T Consensus 20 ~~~~~~v~i~G~G~~g~~~a~~l~~~~~-----~~v~v~~rdi~ 58 (86)
T cd05191 20 SLKGKTVVVLGAGEVGKGIAKLLADEGG-----KKVVLCDRDIL 58 (86)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-----CEEEEEcCCEE
Confidence 4778999999999999999999999976 68999988443
No 240
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=88.40 E-value=1.8 Score=51.66 Aligned_cols=88 Identities=18% Similarity=0.154 Sum_probs=58.7
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEec
Q 001747 31 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 110 (1018)
Q Consensus 31 L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~~ 110 (1018)
+...||+|+|+|.+|..+++.|...|. .++++|.+.= + .+.+++..+.+. ++..
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~-~v~vid~~~~-------------------~----~~~~~~~~~~~~--~i~g 282 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGY-SVKLIERDPE-------------------R----AEELAEELPNTL--VLHG 282 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHH-------------------H----HHHHHHHCCCCe--EEEC
Confidence 457899999999999999999999888 6888885431 1 123333323332 2322
Q ss_pred CC-C-----hhhccCCceEEEcccCHHHHHHHHHHHHhcC
Q 001747 111 KL-T-----KEQLSDFQAVVFTDISLDKAIEFDDFCHNHQ 144 (1018)
Q Consensus 111 ~l-~-----~~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~ 144 (1018)
+. + +..+.+++.||++..+......+...|++.+
T Consensus 283 d~~~~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~~~ 322 (453)
T PRK09496 283 DGTDQELLEEEGIDEADAFIALTNDDEANILSSLLAKRLG 322 (453)
T ss_pred CCCCHHHHHhcCCccCCEEEECCCCcHHHHHHHHHHHHhC
Confidence 22 2 2346688998888766555566666788887
No 241
>PRK07831 short chain dehydrogenase; Provisional
Probab=88.26 E-value=1.5 Score=47.99 Aligned_cols=34 Identities=21% Similarity=0.393 Sum_probs=28.3
Q ss_pred HhcCcEEEEcc-C-cchHHHHHHHHhcCcccCCCccEEEecC
Q 001747 428 LEDAKVFIVGS-G-ALGCEFLKNVALMGVSCGNQGKLTITDD 467 (1018)
Q Consensus 428 l~~~~v~vvG~-G-giG~e~lk~La~~Gv~~~~~g~i~ivD~ 467 (1018)
+.+++++|.|+ | |||..+++.|+..|. +++++|.
T Consensus 15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~------~V~~~~~ 50 (262)
T PRK07831 15 LAGKVVLVTAAAGTGIGSATARRALEEGA------RVVISDI 50 (262)
T ss_pred cCCCEEEEECCCcccHHHHHHHHHHHcCC------EEEEEeC
Confidence 44678999996 6 899999999999998 5777653
No 242
>PRK06436 glycerate dehydrogenase; Provisional
Probab=88.13 E-value=0.49 Score=53.45 Aligned_cols=36 Identities=17% Similarity=0.226 Sum_probs=31.9
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCC
Q 001747 427 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 468 (1018)
Q Consensus 427 ~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D 468 (1018)
.|.+++|.|||.|.||.++++.|...|+ +++.+|..
T Consensus 119 ~L~gktvgIiG~G~IG~~vA~~l~afG~------~V~~~~r~ 154 (303)
T PRK06436 119 LLYNKSLGILGYGGIGRRVALLAKAFGM------NIYAYTRS 154 (303)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCC------EEEEECCC
Confidence 5889999999999999999998888888 88888854
No 243
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.07 E-value=2.8 Score=46.78 Aligned_cols=33 Identities=30% Similarity=0.350 Sum_probs=29.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCc
Q 001747 34 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 67 (1018)
Q Consensus 34 s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~ 67 (1018)
.+|.|||+|-+|..+|..|+.+|. .++++|.+.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~ 36 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISD 36 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCH
Confidence 579999999999999999999998 899998643
No 244
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.06 E-value=2.7 Score=47.51 Aligned_cols=32 Identities=28% Similarity=0.367 Sum_probs=28.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCC
Q 001747 34 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 66 (1018)
Q Consensus 34 s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d 66 (1018)
.+|.|||+|.+|+.+|..|+.+|. .++++|.+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~ 36 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVM 36 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence 579999999999999999999997 78999853
No 245
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=87.99 E-value=1.1 Score=50.89 Aligned_cols=33 Identities=18% Similarity=0.316 Sum_probs=29.8
Q ss_pred cCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCC
Q 001747 430 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 468 (1018)
Q Consensus 430 ~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D 468 (1018)
..+|.|+|+|.+|+.+++.|+..|. .++++|.+
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~------~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGH------RVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC------EEEEEeCC
Confidence 4689999999999999999999997 78888865
No 246
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=87.98 E-value=1.3 Score=50.34 Aligned_cols=34 Identities=26% Similarity=0.445 Sum_probs=30.1
Q ss_pred cCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecC
Q 001747 430 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 467 (1018)
Q Consensus 430 ~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~ 467 (1018)
..||.|||||.+|+.++-.|++.|++ ..|.|+|-
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~----~el~LiD~ 36 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLA----DELVLVDV 36 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCC----CEEEEEeC
Confidence 35899999999999999999999984 57999974
No 247
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=87.97 E-value=1.5 Score=54.67 Aligned_cols=88 Identities=13% Similarity=0.284 Sum_probs=63.0
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEecCC
Q 001747 33 ASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKL 112 (1018)
Q Consensus 33 ~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~~~l 112 (1018)
+.||+|+|+|-+|..+++.|...|+ .++++|.|.- |++. +++. .. .++..+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~-------------------~v~~----~~~~--g~--~v~~GDa 451 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPD-------------------HIET----LRKF--GM--KVFYGDA 451 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHH-------------------HHHH----HHhc--CC--eEEEEeC
Confidence 5799999999999999999999998 6888887542 3332 2222 22 2333332
Q ss_pred C-h-----hhccCCceEEEcccCHHHHHHHHHHHHhcCCCce
Q 001747 113 T-K-----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAIS 148 (1018)
Q Consensus 113 ~-~-----~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~ 148 (1018)
+ + ..+++.++||++.++.+....+-..+|++.+.++
T Consensus 452 t~~~~L~~agi~~A~~vvv~~~d~~~n~~i~~~ar~~~p~~~ 493 (621)
T PRK03562 452 TRMDLLESAGAAKAEVLINAIDDPQTSLQLVELVKEHFPHLQ 493 (621)
T ss_pred CCHHHHHhcCCCcCCEEEEEeCCHHHHHHHHHHHHHhCCCCe
Confidence 2 2 3466889999999888888888888998874443
No 248
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.96 E-value=0.78 Score=51.19 Aligned_cols=35 Identities=20% Similarity=0.295 Sum_probs=31.2
Q ss_pred HHhcCcEEEEccCc-chHHHHHHHHhcCcccCCCccEEEecC
Q 001747 427 KLEDAKVFIVGSGA-LGCEFLKNVALMGVSCGNQGKLTITDD 467 (1018)
Q Consensus 427 ~l~~~~v~vvG~Gg-iG~e~lk~La~~Gv~~~~~g~i~ivD~ 467 (1018)
.|.+++|+|||.|. +|..+++.|...|. .+++++.
T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~ga------tVtv~~s 190 (286)
T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNA------SVTILHS 190 (286)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCC------eEEEEeC
Confidence 47889999999999 99999999999997 8888763
No 249
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=87.94 E-value=1.8 Score=52.75 Aligned_cols=82 Identities=12% Similarity=0.319 Sum_probs=49.2
Q ss_pred hcCcEEEEc-cCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhh------
Q 001747 429 EDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSI------ 501 (1018)
Q Consensus 429 ~~~~v~vvG-~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~------ 501 (1018)
.++.|+|.| +|+||..+++.|+..|. ++++++.+. .|.+.+.+.+.++
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G~------~Vval~Rn~-------------------ekl~~l~~~l~~~~L~~~G 133 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLGF------RVRAGVRSA-------------------QRAESLVQSVKQMKLDVEG 133 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC------eEEEEeCCH-------------------HHHHHHHHHhhhhcccccc
Confidence 445788888 59999999999999997 677665432 1222223322221
Q ss_pred -CCCCeEEEEecccCCccccccccccccCccEEEEccc
Q 001747 502 -NPRLNIEALQNRVGPETENVFDDTFWENITCVINALD 538 (1018)
Q Consensus 502 -np~~~i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alD 538 (1018)
.+..++..+...+.... .+ ...+.++|+||++..
T Consensus 134 a~~~~~v~iV~gDLtD~e-sI--~~aLggiDiVVn~AG 168 (576)
T PLN03209 134 TQPVEKLEIVECDLEKPD-QI--GPALGNASVVICCIG 168 (576)
T ss_pred ccccCceEEEEecCCCHH-HH--HHHhcCCCEEEEccc
Confidence 11224555665555321 11 234678999998874
No 250
>PRK07062 short chain dehydrogenase; Provisional
Probab=87.78 E-value=1.6 Score=47.78 Aligned_cols=63 Identities=17% Similarity=0.196 Sum_probs=44.5
Q ss_pred HhcCcEEEEcc-CcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCCe
Q 001747 428 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 506 (1018)
Q Consensus 428 l~~~~v~vvG~-GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~~ 506 (1018)
+.++.++|.|+ ||||.++++.|+..|. ++++++.+. .+.+.+++.+.+..|+.+
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~------~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~ 60 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGA------SVAICGRDE-------------------ERLASAEARLREKFPGAR 60 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC------eEEEEeCCH-------------------HHHHHHHHHHHhhCCCce
Confidence 56788999985 7899999999999997 788876542 234444555666666666
Q ss_pred EEEEecccC
Q 001747 507 IEALQNRVG 515 (1018)
Q Consensus 507 i~~~~~~~~ 515 (1018)
+..+...+.
T Consensus 61 ~~~~~~D~~ 69 (265)
T PRK07062 61 LLAARCDVL 69 (265)
T ss_pred EEEEEecCC
Confidence 666655554
No 251
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=87.66 E-value=1 Score=39.98 Aligned_cols=54 Identities=22% Similarity=0.252 Sum_probs=39.8
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhC
Q 001747 35 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELN 100 (1018)
Q Consensus 35 ~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elN 100 (1018)
||+|+|.|.+|+|+|..|...|. ++||++...- +. ...+..-++.+.+.|++.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~~---------~~--~~~~~~~~~~~~~~l~~~g 54 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSDR---------LL--PGFDPDAAKILEEYLRKRG 54 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSSS---------SS--TTSSHHHHHHHHHHHHHTT
T ss_pred CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccch---------hh--hhcCHHHHHHHHHHHHHCC
Confidence 69999999999999999999996 8899886432 11 1233444566677777763
No 252
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=87.62 E-value=1.6 Score=48.30 Aligned_cols=64 Identities=19% Similarity=0.328 Sum_probs=51.7
Q ss_pred HhcCcEEEEc-cCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCCe
Q 001747 428 LEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLN 506 (1018)
Q Consensus 428 l~~~~v~vvG-~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~~ 506 (1018)
+.+++++|-| .+|||-|+++.||+-|. ++++|-.+ +.|-+.+++.+.... .+.
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~------~liLvaR~-------------------~~kL~~la~~l~~~~-~v~ 57 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGY------NLILVARR-------------------EDKLEALAKELEDKT-GVE 57 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCC------EEEEEeCc-------------------HHHHHHHHHHHHHhh-Cce
Confidence 4567899999 79999999999999998 88887322 457788888888877 788
Q ss_pred EEEEecccCCc
Q 001747 507 IEALQNRVGPE 517 (1018)
Q Consensus 507 i~~~~~~~~~~ 517 (1018)
+..+...+++.
T Consensus 58 v~vi~~DLs~~ 68 (265)
T COG0300 58 VEVIPADLSDP 68 (265)
T ss_pred EEEEECcCCCh
Confidence 88888877753
No 253
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=87.59 E-value=1.6 Score=54.20 Aligned_cols=90 Identities=13% Similarity=0.295 Sum_probs=63.9
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEecCC
Q 001747 33 ASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKL 112 (1018)
Q Consensus 33 ~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~~~l 112 (1018)
+.||+|+|.|.+|..+++.|...|+ .++++|.|.- +++ .+++.. ..++..+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~-------------------~v~----~~~~~g----~~v~~GDa 451 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKM-RITVLERDIS-------------------AVN----LMRKYG----YKVYYGDA 451 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCC-CEEEEECCHH-------------------HHH----HHHhCC----CeEEEeeC
Confidence 5799999999999999999999999 6889887542 222 233321 22333333
Q ss_pred C-h-----hhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeE
Q 001747 113 T-K-----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFI 150 (1018)
Q Consensus 113 ~-~-----~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi 150 (1018)
+ + .-+++.++||++.++.+....+-..+|++++..+.+
T Consensus 452 t~~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~p~~~Ii 495 (601)
T PRK03659 452 TQLELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQHFPHLHIL 495 (601)
T ss_pred CCHHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHHCCCCeEE
Confidence 2 2 246788999999988888888888899987544443
No 254
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=87.54 E-value=1.4 Score=57.32 Aligned_cols=95 Identities=15% Similarity=0.089 Sum_probs=59.1
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhc-CC------------EEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHh
Q 001747 32 FASNILVSGMQGLGAEIAKNLILAG-VK------------SVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQE 98 (1018)
Q Consensus 32 ~~s~VlIiG~gglG~eiaKnLvlaG-Vg------------~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~e 98 (1018)
+.++|+|+|+|.+|..++++|+..+ +. .+++.|. ...+|+.+++.
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~-------------------~~~~a~~la~~--- 625 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASL-------------------YLKDAKETVEG--- 625 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECC-------------------CHHHHHHHHHh---
Confidence 4679999999999999999998753 32 2444432 22344443333
Q ss_pred hCCCcEEEEE-ecCCC--hhhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEEe
Q 001747 99 LNNAVVLSTL-TSKLT--KEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKA 152 (1018)
Q Consensus 99 lNp~V~v~~~-~~~l~--~~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~~ 152 (1018)
.|.++.... ..+.. .+.+++.|+||.|... .....+...|-++| +.++..
T Consensus 626 -~~~~~~v~lDv~D~e~L~~~v~~~DaVIsalP~-~~H~~VAkaAieaG--kHvv~e 678 (1042)
T PLN02819 626 -IENAEAVQLDVSDSESLLKYVSQVDVVISLLPA-SCHAVVAKACIELK--KHLVTA 678 (1042)
T ss_pred -cCCCceEEeecCCHHHHHHhhcCCCEEEECCCc-hhhHHHHHHHHHcC--CCEEEC
Confidence 244322111 11111 1245679999988754 45678889999999 777654
No 255
>PRK08251 short chain dehydrogenase; Provisional
Probab=87.46 E-value=1.8 Score=46.69 Aligned_cols=62 Identities=18% Similarity=0.277 Sum_probs=43.9
Q ss_pred cCcEEEEc-cCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCCeEE
Q 001747 430 DAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIE 508 (1018)
Q Consensus 430 ~~~v~vvG-~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~~i~ 508 (1018)
+++++|.| .||||.++++.|+..|. ++++++.+. .+...+.+.+...+|..++.
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~------~v~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~ 56 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR------DLALCARRT-------------------DRLEELKAELLARYPGIKVA 56 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC------EEEEEeCCH-------------------HHHHHHHHHHHhhCCCceEE
Confidence 56789998 89999999999999986 777776531 12334445555666777777
Q ss_pred EEecccCC
Q 001747 509 ALQNRVGP 516 (1018)
Q Consensus 509 ~~~~~~~~ 516 (1018)
.+...+..
T Consensus 57 ~~~~D~~~ 64 (248)
T PRK08251 57 VAALDVND 64 (248)
T ss_pred EEEcCCCC
Confidence 77665553
No 256
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=87.45 E-value=1.9 Score=51.86 Aligned_cols=87 Identities=17% Similarity=0.264 Sum_probs=67.6
Q ss_pred HHHHHHhcCcEEEEcc-CcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhh
Q 001747 423 KLQKKLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSI 501 (1018)
Q Consensus 423 ~~q~~l~~~~v~vvG~-GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~ 501 (1018)
..+..+.+++|+|-|+ |.+|+|+++.++..+. .+|.++|.|- .|-......+++.
T Consensus 243 ~i~~~~~gK~vLVTGagGSiGsel~~qil~~~p-----~~i~l~~~~E-------------------~~~~~i~~el~~~ 298 (588)
T COG1086 243 LIGAMLTGKTVLVTGGGGSIGSELCRQILKFNP-----KEIILFSRDE-------------------YKLYLIDMELREK 298 (588)
T ss_pred HHHhHcCCCEEEEeCCCCcHHHHHHHHHHhcCC-----CEEEEecCch-------------------HHHHHHHHHHHhh
Confidence 4567889999999985 5599999999999999 8999987654 4566677888888
Q ss_pred CCCCeEEEEecccCCccccccccccccC--ccEEEEc
Q 001747 502 NPRLNIEALQNRVGPETENVFDDTFWEN--ITCVINA 536 (1018)
Q Consensus 502 np~~~i~~~~~~~~~~~~~~~~~~~~~~--~dvVi~a 536 (1018)
.|..++.++-..+.+.. .+ ...+.+ .|+|+-|
T Consensus 299 ~~~~~~~~~igdVrD~~-~~--~~~~~~~kvd~VfHA 332 (588)
T COG1086 299 FPELKLRFYIGDVRDRD-RV--ERAMEGHKVDIVFHA 332 (588)
T ss_pred CCCcceEEEecccccHH-HH--HHHHhcCCCceEEEh
Confidence 89899999988887522 11 234455 8888876
No 257
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=87.44 E-value=2.1 Score=42.72 Aligned_cols=85 Identities=16% Similarity=0.158 Sum_probs=49.7
Q ss_pred EEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhC-CC--cEEEEEecCC
Q 001747 36 ILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELN-NA--VVLSTLTSKL 112 (1018)
Q Consensus 36 VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elN-p~--V~v~~~~~~l 112 (1018)
|+|+|+|++|+-+|-.|..+|. .+++++... ++++..+.=-.+. +. -.+.......
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~~--------------------~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 59 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRSP--------------------RLEAIKEQGLTITGPDGDETVQPPIVIS 59 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC-EEEEEESHH--------------------HHHHHHHHCEEEEETTEEEEEEEEEEES
T ss_pred CEEECcCHHHHHHHHHHHHCCC-ceEEEEccc--------------------cHHhhhheeEEEEecccceecccccccC
Confidence 7999999999999999999887 688876432 2222111100011 11 0111111001
Q ss_pred C-hhhccCCceEEEcccCHHHHHHHHHHHH
Q 001747 113 T-KEQLSDFQAVVFTDISLDKAIEFDDFCH 141 (1018)
Q Consensus 113 ~-~~~~~~~dvVI~~~~~~~~~~~ln~~c~ 141 (1018)
. .+....+|+||+|.-+......+..+..
T Consensus 60 ~~~~~~~~~D~viv~vKa~~~~~~l~~l~~ 89 (151)
T PF02558_consen 60 APSADAGPYDLVIVAVKAYQLEQALQSLKP 89 (151)
T ss_dssp SHGHHHSTESEEEE-SSGGGHHHHHHHHCT
T ss_pred cchhccCCCcEEEEEecccchHHHHHHHhh
Confidence 1 1356789999999988777776666433
No 258
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=87.33 E-value=2.9 Score=45.45 Aligned_cols=81 Identities=16% Similarity=0.192 Sum_probs=47.9
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhcC---CEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEE
Q 001747 32 FASNILVSGMQGLGAEIAKNLILAGV---KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTL 108 (1018)
Q Consensus 32 ~~s~VlIiG~gglG~eiaKnLvlaGV---g~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~ 108 (1018)
+..||.|||+|.+|..+++.|...|. ..+.+++... ..+++. +.+..+ +. ..
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~------------------~~~~~~----~~~~~~-~~--~~ 57 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSN------------------VEKLDQ----LQARYN-VS--TT 57 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCC------------------HHHHHH----HHHHcC-cE--Ee
Confidence 45789999999999999999998873 2344443210 123332 222211 22 22
Q ss_pred ecCCChhhccCCceEEEcccCHHHHHHHHHH
Q 001747 109 TSKLTKEQLSDFQAVVFTDISLDKAIEFDDF 139 (1018)
Q Consensus 109 ~~~l~~~~~~~~dvVI~~~~~~~~~~~ln~~ 139 (1018)
. + ..+.+++.|+||.|..+......+.++
T Consensus 58 ~-~-~~~~~~~~DiViiavp~~~~~~v~~~l 86 (245)
T PRK07634 58 T-D-WKQHVTSVDTIVLAMPPSAHEELLAEL 86 (245)
T ss_pred C-C-hHHHHhcCCEEEEecCHHHHHHHHHHH
Confidence 1 1 234567899999998765444444443
No 259
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=87.33 E-value=2.3 Score=41.69 Aligned_cols=83 Identities=19% Similarity=0.236 Sum_probs=46.0
Q ss_pred hcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCCeEE
Q 001747 429 EDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIE 508 (1018)
Q Consensus 429 ~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~~i~ 508 (1018)
...||.|||+|-+|..+++.|...|. .|.-+ +.+ +...++++.++-+...+.
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~------~v~~v---------------~sr-------s~~sa~~a~~~~~~~~~~ 60 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGH------EVVGV---------------YSR-------SPASAERAAAFIGAGAIL 60 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTS------EEEEE---------------SSC-------HH-HHHHHHC--TT----
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCC------eEEEE---------------EeC-------Cccccccccccccccccc
Confidence 45699999999999999999999997 44432 111 112233343444433221
Q ss_pred EEecccCCccccccccccccCccEEEEcccChhHHHHHHhhccc
Q 001747 509 ALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLY 552 (1018)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~ 552 (1018)
.. .+.....|+|+-|+=+..-......++..
T Consensus 61 ~~-------------~~~~~~aDlv~iavpDdaI~~va~~La~~ 91 (127)
T PF10727_consen 61 DL-------------EEILRDADLVFIAVPDDAIAEVAEQLAQY 91 (127)
T ss_dssp -T-------------TGGGCC-SEEEE-S-CCHHHHHHHHHHCC
T ss_pred cc-------------ccccccCCEEEEEechHHHHHHHHHHHHh
Confidence 11 23457899999998666666666666654
No 260
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=87.29 E-value=2.1 Score=49.04 Aligned_cols=31 Identities=26% Similarity=0.319 Sum_probs=25.8
Q ss_pred CcEEEEcc-CcchHHHHHHHHhc-CcccCCCccEEEecC
Q 001747 431 AKVFIVGS-GALGCEFLKNVALM-GVSCGNQGKLTITDD 467 (1018)
Q Consensus 431 ~~v~vvG~-GgiG~e~lk~La~~-Gv~~~~~g~i~ivD~ 467 (1018)
++|+|.|+ |-||+.+++.|... |. +++.+|.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~------~V~~~~r 34 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDW------EVYGMDM 34 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCC------eEEEEeC
Confidence 47999996 99999999999876 45 7887764
No 261
>PTZ00325 malate dehydrogenase; Provisional
Probab=87.25 E-value=1.2 Score=50.69 Aligned_cols=77 Identities=14% Similarity=0.144 Sum_probs=50.2
Q ss_pred hhcCeEEEEcC-ChHHHHHHHHHHHhcC-CEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEE
Q 001747 31 LFASNILVSGM-QGLGAEIAKNLILAGV-KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTL 108 (1018)
Q Consensus 31 L~~s~VlIiG~-gglG~eiaKnLvlaGV-g~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~ 108 (1018)
++-.||.|+|+ |.+|+.++-.|+..|. ..+.|+|-+.. +++ +.-|+..++.+.+...
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~-------------------~g~--a~Dl~~~~~~~~v~~~ 64 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGA-------------------PGV--AADLSHIDTPAKVTGY 64 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCC-------------------ccc--ccchhhcCcCceEEEe
Confidence 44569999999 9999999999987776 47999996211 111 1123333344455443
Q ss_pred ecCCC-hhhccCCceEEEccc
Q 001747 109 TSKLT-KEQLSDFQAVVFTDI 128 (1018)
Q Consensus 109 ~~~l~-~~~~~~~dvVI~~~~ 128 (1018)
.+.-+ .+.+++.|+||.+..
T Consensus 65 td~~~~~~~l~gaDvVVitaG 85 (321)
T PTZ00325 65 ADGELWEKALRGADLVLICAG 85 (321)
T ss_pred cCCCchHHHhCCCCEEEECCC
Confidence 32222 467889999998754
No 262
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=87.12 E-value=1.6 Score=51.75 Aligned_cols=92 Identities=21% Similarity=0.249 Sum_probs=60.5
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEec
Q 001747 31 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 110 (1018)
Q Consensus 31 L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~~ 110 (1018)
+.+.+|+|+|+|..|..+++.|...| ..+++.|.+.-. .+...+ ..+-+.+. +...
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G-~~v~v~D~~~~~-~~~~~~--------------------~~~~~~i~--~~~g 60 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLG-AEVTVSDDRPAP-EGLAAQ--------------------PLLLEGIE--VELG 60 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCC-CeEEEEcCCCCc-cchhhh--------------------hhhccCce--eecC
Confidence 44899999999999999999999999 589999976543 221111 11122333 3333
Q ss_pred CCChhhccCCceEEEccc-CHHHHHHHHHHHHhcCCCceeE
Q 001747 111 KLTKEQLSDFQAVVFTDI-SLDKAIEFDDFCHNHQPAISFI 150 (1018)
Q Consensus 111 ~l~~~~~~~~dvVI~~~~-~~~~~~~ln~~c~~~~~~i~fi 150 (1018)
....+.+..+|+||.+-. ++... +-+.+++.| +|++
T Consensus 61 ~~~~~~~~~~d~vV~SPGi~~~~p--~v~~A~~~g--i~i~ 97 (448)
T COG0771 61 SHDDEDLAEFDLVVKSPGIPPTHP--LVEAAKAAG--IEII 97 (448)
T ss_pred ccchhccccCCEEEECCCCCCCCH--HHHHHHHcC--CcEE
Confidence 333477889999998764 32222 344567777 7765
No 263
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=87.12 E-value=2.6 Score=47.63 Aligned_cols=34 Identities=15% Similarity=0.299 Sum_probs=29.9
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhcC-CEEEEEeCC
Q 001747 33 ASNILVSGMQGLGAEIAKNLILAGV-KSVTLHDEG 66 (1018)
Q Consensus 33 ~s~VlIiG~gglG~eiaKnLvlaGV-g~itlvD~d 66 (1018)
..+|+|||+|.+|..+++.|...|. .+++++|.+
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~ 40 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRS 40 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 4689999999999999999999997 478888863
No 264
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=87.10 E-value=1 Score=50.84 Aligned_cols=33 Identities=27% Similarity=0.414 Sum_probs=30.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCC-EEEEEeCC
Q 001747 34 SNILVSGMQGLGAEIAKNLILAGVK-SVTLHDEG 66 (1018)
Q Consensus 34 s~VlIiG~gglG~eiaKnLvlaGVg-~itlvD~d 66 (1018)
.||.|+|+|.+|+.+|-.|+.-+++ .+.|+|-.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~ 34 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDIN 34 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcc
Confidence 4799999999999999999999999 99999953
No 265
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=87.09 E-value=1 Score=40.72 Aligned_cols=37 Identities=35% Similarity=0.387 Sum_probs=34.1
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCC
Q 001747 30 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 66 (1018)
Q Consensus 30 ~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d 66 (1018)
.+..++++|+|.|++|.-++..|...|...++++|.|
T Consensus 20 ~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~rd 56 (86)
T cd05191 20 SLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDRD 56 (86)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 3778999999999999999999999998999999983
No 266
>PLN02602 lactate dehydrogenase
Probab=86.99 E-value=1.3 Score=50.98 Aligned_cols=33 Identities=24% Similarity=0.458 Sum_probs=30.0
Q ss_pred CcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecC
Q 001747 431 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 467 (1018)
Q Consensus 431 ~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~ 467 (1018)
.||.|||+|.+|+.++-.|+..|++ +.|.|+|-
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~----~el~LiDi 70 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLA----DELALVDV 70 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCC----CEEEEEeC
Confidence 5999999999999999999999984 68999974
No 267
>PLN02206 UDP-glucuronate decarboxylase
Probab=86.94 E-value=1.7 Score=51.83 Aligned_cols=33 Identities=18% Similarity=0.487 Sum_probs=28.4
Q ss_pred hcCcEEEEc-cCcchHHHHHHHHhcCcccCCCccEEEecC
Q 001747 429 EDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDD 467 (1018)
Q Consensus 429 ~~~~v~vvG-~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~ 467 (1018)
+++||+|.| +|-||+.+++.|...|. +++++|.
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~------~V~~ld~ 151 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGD------SVIVVDN 151 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcC------EEEEEeC
Confidence 457899999 69999999999999997 7777764
No 268
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=86.83 E-value=1.5 Score=49.47 Aligned_cols=111 Identities=14% Similarity=0.145 Sum_probs=60.5
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhh-CCCcEEEEEecCCC
Q 001747 35 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQEL-NNAVVLSTLTSKLT 113 (1018)
Q Consensus 35 ~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~el-Np~V~v~~~~~~l~ 113 (1018)
+|.|||+|..|+.++.+|+..|. .++++|.+.-....+... |...+....+....+ .+++-+...+....
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~ 72 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQDAVKAMKED--------RTTGVANLRELSQRLSAPRVVWVMVPHGIV 72 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHc--------CCcccCCHHHHHhhcCCCCEEEEEcCchHH
Confidence 69999999999999999999996 788888754322222211 100000011111111 24444444333211
Q ss_pred hh-------hccCCceEEEccc-CHHHHHHHHHHHHhcCCCceeEEeeecc
Q 001747 114 KE-------QLSDFQAVVFTDI-SLDKAIEFDDFCHNHQPAISFIKAEVRG 156 (1018)
Q Consensus 114 ~~-------~~~~~dvVI~~~~-~~~~~~~ln~~c~~~~~~i~fi~~~~~G 156 (1018)
++ .+..=++||.+.. ......++.+.+.+.+ +.|+.+.+.|
T Consensus 73 ~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g--~~~vda~vsG 121 (298)
T TIGR00872 73 DAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKG--IHLLDCGTSG 121 (298)
T ss_pred HHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcC--CeEEecCCCC
Confidence 11 2333356666544 3345555666677777 7777766655
No 269
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.75 E-value=6.1 Score=44.30 Aligned_cols=33 Identities=33% Similarity=0.385 Sum_probs=29.9
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCC
Q 001747 33 ASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 66 (1018)
Q Consensus 33 ~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d 66 (1018)
-++|.|||+|..|..+|.+|+.+|. .++++|.+
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~ 36 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVS 36 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 4689999999999999999999997 78999864
No 270
>PLN02206 UDP-glucuronate decarboxylase
Probab=86.74 E-value=3 Score=49.75 Aligned_cols=103 Identities=13% Similarity=0.194 Sum_probs=63.2
Q ss_pred hcCeEEEEc-CChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEec
Q 001747 32 FASNILVSG-MQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 110 (1018)
Q Consensus 32 ~~s~VlIiG-~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~~ 110 (1018)
+..||||.| .|-+|+.+++.|...|. ++..+|..... +.+.....+ .++ .++.+..
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~-~V~~ld~~~~~------------------~~~~~~~~~--~~~--~~~~i~~ 174 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGD-SVIVVDNFFTG------------------RKENVMHHF--SNP--NFELIRH 174 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcC-EEEEEeCCCcc------------------chhhhhhhc--cCC--ceEEEEC
Confidence 568899999 58899999999999997 56666642210 000000111 123 3344444
Q ss_pred CCChhhccCCceEEEccc---------CHH--------HHHHHHHHHHhcCCCceeEEeeecceeE
Q 001747 111 KLTKEQLSDFQAVVFTDI---------SLD--------KAIEFDDFCHNHQPAISFIKAEVRGLFG 159 (1018)
Q Consensus 111 ~l~~~~~~~~dvVI~~~~---------~~~--------~~~~ln~~c~~~~~~i~fi~~~~~G~~G 159 (1018)
++.+..+.++|+||-+.. +.. .-..+-++|++.+ ++||.+++...||
T Consensus 175 D~~~~~l~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g--~r~V~~SS~~VYg 238 (442)
T PLN02206 175 DVVEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG--ARFLLTSTSEVYG 238 (442)
T ss_pred CccChhhcCCCEEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhC--CEEEEECChHHhC
Confidence 444445567888885432 111 1234557899998 8999999887775
No 271
>PRK07576 short chain dehydrogenase; Provisional
Probab=86.69 E-value=1 Score=49.46 Aligned_cols=37 Identities=14% Similarity=0.302 Sum_probs=31.7
Q ss_pred HHHhcCcEEEEcc-CcchHHHHHHHHhcCcccCCCccEEEecCC
Q 001747 426 KKLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 468 (1018)
Q Consensus 426 ~~l~~~~v~vvG~-GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D 468 (1018)
.++.+++++|.|+ |+||.++++.|+..|. +++++|.+
T Consensus 5 ~~~~~k~ilItGasggIG~~la~~l~~~G~------~V~~~~r~ 42 (264)
T PRK07576 5 FDFAGKNVVVVGGTSGINLGIAQAFARAGA------NVAVASRS 42 (264)
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEeCC
Confidence 3577889999985 8999999999999997 68888754
No 272
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=86.67 E-value=0.63 Score=49.33 Aligned_cols=36 Identities=28% Similarity=0.456 Sum_probs=32.3
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCC
Q 001747 427 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 468 (1018)
Q Consensus 427 ~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D 468 (1018)
.|.+++|+|+|.|.+|..+++.|...|. +++++|.+
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~------~Vvv~D~~ 60 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEEGA------KLIVADIN 60 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEEcCC
Confidence 4678899999999999999999999997 88888755
No 273
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=86.67 E-value=2.1 Score=49.88 Aligned_cols=76 Identities=16% Similarity=0.083 Sum_probs=52.6
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHhcCC------EEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhC-CCc-E
Q 001747 34 SNILVSGM-QGLGAEIAKNLILAGVK------SVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELN-NAV-V 104 (1018)
Q Consensus 34 s~VlIiG~-gglG~eiaKnLvlaGVg------~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elN-p~V-~ 104 (1018)
.||.|+|+ |.+|+.+|-.|+..|+- .++|+|-| +.+.++++-+.-|+..- |.. .
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD-----------------~~~~~a~g~a~DL~d~a~~~~~~ 107 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSE-----------------RSKEALEGVAMELEDSLYPLLRE 107 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccC-----------------ccchhhhHHHHHHHHhhhhhcCc
Confidence 58999999 99999999999999984 46777642 33445665555555544 432 2
Q ss_pred EEEEecCCChhhccCCceEEEccc
Q 001747 105 LSTLTSKLTKEQLSDFQAVVFTDI 128 (1018)
Q Consensus 105 v~~~~~~l~~~~~~~~dvVI~~~~ 128 (1018)
+.+..+ +.+.+++.|+||.+..
T Consensus 108 v~i~~~--~y~~~kdaDIVVitAG 129 (387)
T TIGR01757 108 VSIGID--PYEVFEDADWALLIGA 129 (387)
T ss_pred eEEecC--CHHHhCCCCEEEECCC
Confidence 332222 3467899999998765
No 274
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.62 E-value=2.9 Score=50.08 Aligned_cols=93 Identities=18% Similarity=0.064 Sum_probs=58.4
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEecCCC
Q 001747 34 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLT 113 (1018)
Q Consensus 34 s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~~~l~ 113 (1018)
++|+|+|+|+.|...|+.|...|. ++++.|..... +...+...|.++ .+++..-. ...
T Consensus 1 ~~v~viG~G~sG~s~a~~l~~~G~-~V~~~D~~~~~------------------~~~~~~~~l~~~--gi~~~~g~-~~~ 58 (459)
T PRK02705 1 AIAHVIGLGRSGIAAARLLKAQGW-EVVVSDRNDSP------------------ELLERQQELEQE--GITVKLGK-PLE 58 (459)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCC-EEEEECCCCch------------------hhHHHHHHHHHc--CCEEEECC-ccc
Confidence 479999999999999999999997 78998864321 122233445444 34443211 111
Q ss_pred h----hhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEE
Q 001747 114 K----EQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIK 151 (1018)
Q Consensus 114 ~----~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~ 151 (1018)
. ..+.++|+||.+..-.. ...+-..+++.+ +|++.
T Consensus 59 ~~~~~~~~~~~d~vv~s~gi~~-~~~~~~~a~~~~--i~v~~ 97 (459)
T PRK02705 59 LESFQPWLDQPDLVVVSPGIPW-DHPTLVELRERG--IEVIG 97 (459)
T ss_pred hhhhhHHhhcCCEEEECCCCCC-CCHHHHHHHHcC--CcEEE
Confidence 1 25678999988654211 122344567888 88775
No 275
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=86.60 E-value=2.9 Score=46.91 Aligned_cols=33 Identities=30% Similarity=0.360 Sum_probs=29.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCc
Q 001747 34 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 67 (1018)
Q Consensus 34 s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~ 67 (1018)
++|.|||+|-+|+.+|.+|+.+|. .++++|.+.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence 579999999999999999999996 899998643
No 276
>PRK06141 ornithine cyclodeaminase; Validated
Probab=86.51 E-value=1.9 Score=48.96 Aligned_cols=77 Identities=19% Similarity=0.166 Sum_probs=54.8
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHH-hcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEE
Q 001747 30 RLFASNILVSGMQGLGAEIAKNLIL-AGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTL 108 (1018)
Q Consensus 30 ~L~~s~VlIiG~gglG~eiaKnLvl-aGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~ 108 (1018)
+...++|+|+|+|+.|..+++.+.+ .|+.++++++.+ ..|++..++.+.+... .+.+.
T Consensus 122 ~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs-------------------~~~a~~~a~~~~~~g~--~~~~~ 180 (314)
T PRK06141 122 RKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRD-------------------PAKAEALAAELRAQGF--DAEVV 180 (314)
T ss_pred CCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCC-------------------HHHHHHHHHHHHhcCC--ceEEe
Confidence 3357899999999999999997665 688999998742 3477888888766422 23332
Q ss_pred ecCCChhhccCCceEEEcccC
Q 001747 109 TSKLTKEQLSDFQAVVFTDIS 129 (1018)
Q Consensus 109 ~~~l~~~~~~~~dvVI~~~~~ 129 (1018)
. + .++.+.++|+||+++.+
T Consensus 181 ~-~-~~~av~~aDIVi~aT~s 199 (314)
T PRK06141 181 T-D-LEAAVRQADIISCATLS 199 (314)
T ss_pred C-C-HHHHHhcCCEEEEeeCC
Confidence 1 1 23467899999887754
No 277
>PRK07340 ornithine cyclodeaminase; Validated
Probab=86.49 E-value=1.9 Score=48.84 Aligned_cols=75 Identities=13% Similarity=0.051 Sum_probs=55.8
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHH-hcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEe
Q 001747 31 LFASNILVSGMQGLGAEIAKNLIL-AGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 109 (1018)
Q Consensus 31 L~~s~VlIiG~gglG~eiaKnLvl-aGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~ 109 (1018)
....+|+|+|+|+.|...++.+.. .|+.++.++|.+ ..|+++.++++++.+. .+. .
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~-------------------~~~a~~~a~~~~~~~~--~~~--~ 179 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRT-------------------AASAAAFCAHARALGP--TAE--P 179 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCC-------------------HHHHHHHHHHHHhcCC--eeE--E
Confidence 356899999999999999999964 688999998753 3478888888876533 222 1
Q ss_pred cCCChhhccCCceEEEcccC
Q 001747 110 SKLTKEQLSDFQAVVFTDIS 129 (1018)
Q Consensus 110 ~~l~~~~~~~~dvVI~~~~~ 129 (1018)
.+ .++.+.++|+||.|+.+
T Consensus 180 ~~-~~~av~~aDiVitaT~s 198 (304)
T PRK07340 180 LD-GEAIPEAVDLVVTATTS 198 (304)
T ss_pred CC-HHHHhhcCCEEEEccCC
Confidence 12 23467899999988864
No 278
>PRK10537 voltage-gated potassium channel; Provisional
Probab=86.47 E-value=1.8 Score=50.68 Aligned_cols=97 Identities=12% Similarity=0.034 Sum_probs=58.8
Q ss_pred HHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEE
Q 001747 29 RRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTL 108 (1018)
Q Consensus 29 ~~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~ 108 (1018)
...++.||+|+|.|.+|.++++.|...|. .++++|.+.++. ...+-.+.+..+..
T Consensus 236 ~~~~k~HvII~G~g~lg~~v~~~L~~~g~-~vvVId~d~~~~------------------------~~~~g~~vI~GD~t 290 (393)
T PRK10537 236 HMHRKDHFIICGHSPLAINTYLGLRQRGQ-AVTVIVPLGLEH------------------------RLPDDADLIPGDSS 290 (393)
T ss_pred hcccCCeEEEECCChHHHHHHHHHHHCCC-CEEEEECchhhh------------------------hccCCCcEEEeCCC
Confidence 33457899999999999999999998887 677888652210 00000111111111
Q ss_pred ecC-CChhhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeE
Q 001747 109 TSK-LTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFI 150 (1018)
Q Consensus 109 ~~~-l~~~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi 150 (1018)
+.+ +.+..+++.+.||++.++.+....+-..+|+.++.++.|
T Consensus 291 d~e~L~~AgI~~A~aVI~~t~dD~~Nl~ivL~ar~l~p~~kII 333 (393)
T PRK10537 291 DSAVLKKAGAARARAILALRDNDADNAFVVLAAKEMSSDVKTV 333 (393)
T ss_pred CHHHHHhcCcccCCEEEEcCCChHHHHHHHHHHHHhCCCCcEE
Confidence 100 112346678888887776666666666788887444444
No 279
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=86.44 E-value=0.56 Score=43.01 Aligned_cols=90 Identities=16% Similarity=0.200 Sum_probs=53.7
Q ss_pred cEEEEccCcchHHHHHHHHhcCcccCCCccEEEe-cCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCCeEEEE
Q 001747 432 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTIT-DDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEAL 510 (1018)
Q Consensus 432 ~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~iv-D~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~~i~~~ 510 (1018)
||.+||+|.+|..+++.|+..|+ ...+|+++ +.+. .|+.- +.+..+ +.+...
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~---~~~~v~~~~~r~~-------------------~~~~~----~~~~~~-~~~~~~ 53 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGI---KPHEVIIVSSRSP-------------------EKAAE----LAKEYG-VQATAD 53 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS----GGEEEEEEESSH-------------------HHHHH----HHHHCT-TEEESE
T ss_pred CEEEECCCHHHHHHHHHHHHCCC---CceeEEeeccCcH-------------------HHHHH----HHHhhc-cccccC
Confidence 68999999999999999999996 11466644 3221 12222 222232 111110
Q ss_pred ecccCCccccccccccccCccEEEEcccChhHHHHHHhh-ccccccceEe
Q 001747 511 QNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQR-CLYFQKPLLE 559 (1018)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~-c~~~~~pli~ 559 (1018)
+. .+..+..|+||.|+........+... ....++.+|+
T Consensus 54 ------~~-----~~~~~~advvilav~p~~~~~v~~~i~~~~~~~~vis 92 (96)
T PF03807_consen 54 ------DN-----EEAAQEADVVILAVKPQQLPEVLSEIPHLLKGKLVIS 92 (96)
T ss_dssp ------EH-----HHHHHHTSEEEE-S-GGGHHHHHHHHHHHHTTSEEEE
T ss_pred ------Ch-----HHhhccCCEEEEEECHHHHHHHHHHHhhccCCCEEEE
Confidence 11 24567899999999888888777766 2334555553
No 280
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=86.39 E-value=1.5 Score=52.95 Aligned_cols=117 Identities=11% Similarity=0.106 Sum_probs=72.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCch---HHHHHHHHHHhh-CCCcEEEEEe
Q 001747 34 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKN---RALASVQKLQEL-NNAVVLSTLT 109 (1018)
Q Consensus 34 s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~---ka~a~~~~L~el-Np~V~v~~~~ 109 (1018)
++|.+||+|-.|..+|+||+..|. +++++|.+.-....+... ....|.. -+....+..+.+ .|.+-+....
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~-~V~V~NRt~~k~~~l~~~----~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~ 81 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVER----AKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVK 81 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCC-eEEEECCCHHHHHHHHHh----hhhcCCcccccCCCHHHHHhcCCCCCEEEEECC
Confidence 579999999999999999999998 899998653222222110 0000110 112222333232 3666555544
Q ss_pred cCC-Ch-------hhccCCceEEEccc-CHHHHHHHHHHHHhcCCCceeEEeeecce
Q 001747 110 SKL-TK-------EQLSDFQAVVFTDI-SLDKAIEFDDFCHNHQPAISFIKAEVRGL 157 (1018)
Q Consensus 110 ~~l-~~-------~~~~~~dvVI~~~~-~~~~~~~ln~~c~~~~~~i~fi~~~~~G~ 157 (1018)
..- .+ ..+..=|+||++.. +++...++.+.+.++| +.|+.+.+.|.
T Consensus 82 ~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~G--i~fldapVSGG 136 (493)
T PLN02350 82 AGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKG--LLYLGMGVSGG 136 (493)
T ss_pred CcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcC--CeEEeCCCcCC
Confidence 321 11 12445578887765 5677778889999999 88988777664
No 281
>PLN02928 oxidoreductase family protein
Probab=86.37 E-value=0.73 Score=53.17 Aligned_cols=35 Identities=43% Similarity=0.606 Sum_probs=31.7
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecC
Q 001747 427 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 467 (1018)
Q Consensus 427 ~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~ 467 (1018)
.|.+++|.|||.|.||.++++.|...|+ +++.+|.
T Consensus 156 ~l~gktvGIiG~G~IG~~vA~~l~afG~------~V~~~dr 190 (347)
T PLN02928 156 TLFGKTVFILGYGAIGIELAKRLRPFGV------KLLATRR 190 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHhhCCC------EEEEECC
Confidence 5889999999999999999999998888 8888765
No 282
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=86.35 E-value=4.5 Score=45.27 Aligned_cols=30 Identities=30% Similarity=0.390 Sum_probs=27.8
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCEEEEEeC
Q 001747 35 NILVSGMQGLGAEIAKNLILAGVKSVTLHDE 65 (1018)
Q Consensus 35 ~VlIiG~gglG~eiaKnLvlaGVg~itlvD~ 65 (1018)
+|+|+|+|++|+.++..|..+|. .++++|.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r 31 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVAR 31 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEEC
Confidence 79999999999999999999995 7999986
No 283
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=86.30 E-value=3.6 Score=48.53 Aligned_cols=60 Identities=18% Similarity=0.280 Sum_probs=42.6
Q ss_pred CCCCCCchhhhhhh-hhhhccCHHHHHH-----hhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCc
Q 001747 4 GNSNQTDIDEDLHS-RQLAVYGRETMRR-----LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 67 (1018)
Q Consensus 4 ~~~~~~~~~~~~Yd-RQi~l~G~~~q~~-----L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~ 67 (1018)
|++......+++|- +|- +| ++..+ +.+.+|+|+|+|.+|..+++.+...|. +++++|.+.
T Consensus 170 nds~~K~~~dn~~g~g~s-~~--~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~ 235 (413)
T cd00401 170 NDSVTKSKFDNLYGCRES-LI--DGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDP 235 (413)
T ss_pred cchhhcccccccchhchh-hH--HHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCh
Confidence 34444555566663 333 23 22222 578899999999999999999999999 788888643
No 284
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=86.30 E-value=0.63 Score=48.29 Aligned_cols=43 Identities=23% Similarity=0.254 Sum_probs=35.5
Q ss_pred HHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCcc
Q 001747 25 RETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTV 68 (1018)
Q Consensus 25 ~~~q~~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v 68 (1018)
......|.+++|.|+|+|.+|.++|+-|.-.|. ++..+|...-
T Consensus 28 ~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~ 70 (178)
T PF02826_consen 28 RFPGRELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPK 70 (178)
T ss_dssp TTTBS-STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCH
T ss_pred CCCccccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCC
Confidence 334458899999999999999999999999999 8999997554
No 285
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=86.29 E-value=1.2 Score=50.41 Aligned_cols=72 Identities=17% Similarity=0.209 Sum_probs=48.6
Q ss_pred EEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCC---CeEEE
Q 001747 433 VFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPR---LNIEA 509 (1018)
Q Consensus 433 v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~---~~i~~ 509 (1018)
|.|||+|++|+.++-.|+..|++ .+|+++|.+ +.|++..+.-+....+. .++..
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~----~el~l~D~~-------------------~~~~~g~~~DL~~~~~~~~~~~i~~ 57 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLA----SELVLVDVN-------------------EEKAKGDALDLSHASAFLATGTIVR 57 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCC----CEEEEEeCC-------------------ccHHHHHHHhHHHhccccCCCeEEE
Confidence 57999999999999999999984 579999753 23555555566655543 12221
Q ss_pred EecccCCccccccccccccCccEEEEccc
Q 001747 510 LQNRVGPETENVFDDTFWENITCVINALD 538 (1018)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~dvVi~alD 538 (1018)
+.+ .+-++++|+||.+..
T Consensus 58 -----~~~------~~~l~~aDiVIitag 75 (300)
T cd00300 58 -----GGD------YADAADADIVVITAG 75 (300)
T ss_pred -----CCC------HHHhCCCCEEEEcCC
Confidence 111 124678999998864
No 286
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=86.27 E-value=0.72 Score=52.01 Aligned_cols=32 Identities=22% Similarity=0.387 Sum_probs=28.3
Q ss_pred cEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCc
Q 001747 432 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 469 (1018)
Q Consensus 432 ~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~ 469 (1018)
+|.|||+|.+|..++++|+..|. .+++.|.+.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~------~V~~~dr~~ 33 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH------DCVGYDHDQ 33 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC------EEEEEECCH
Confidence 69999999999999999999997 778877653
No 287
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.96 E-value=1.4 Score=50.17 Aligned_cols=108 Identities=12% Similarity=0.107 Sum_probs=61.6
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCC-----cEEEEE
Q 001747 34 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNA-----VVLSTL 108 (1018)
Q Consensus 34 s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~-----V~v~~~ 108 (1018)
++|.|||+|-+|+.+|.+++.+|. .++++|.+.-..+. ...+.....+.+.+..+. -.++..
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~------------~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ 74 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAA------------LRANVANAWPALERQGLAPGASPARLRFV 74 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHH------------HHHHHHHHHHHHHHcCCChhhHHhhceec
Confidence 589999999999999999999998 89999975421111 112222333333332211 011211
Q ss_pred ecCCChhhccCCceEEEccc-CHHHHHHHH-HHHHhcCCCceeEEeeecce
Q 001747 109 TSKLTKEQLSDFQAVVFTDI-SLDKAIEFD-DFCHNHQPAISFIKAEVRGL 157 (1018)
Q Consensus 109 ~~~l~~~~~~~~dvVI~~~~-~~~~~~~ln-~~c~~~~~~i~fi~~~~~G~ 157 (1018)
. ++ ++.+.+.|+|+-+.. +.+....+- ++..... +-.+|.+++.|+
T Consensus 75 ~-~l-~~av~~aDlViEavpE~l~vK~~lf~~l~~~~~-~~aIlaSnTS~l 122 (321)
T PRK07066 75 A-TI-EACVADADFIQESAPEREALKLELHERISRAAK-PDAIIASSTSGL 122 (321)
T ss_pred C-CH-HHHhcCCCEEEECCcCCHHHHHHHHHHHHHhCC-CCeEEEECCCcc
Confidence 1 11 245789999998764 555444333 3322222 224677777665
No 288
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=85.75 E-value=0.68 Score=54.48 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=30.7
Q ss_pred cCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCc
Q 001747 430 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 469 (1018)
Q Consensus 430 ~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~ 469 (1018)
..+|+|||+|-+||+.|-.|++.|+ +++|+|+..
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl------~V~LiE~rp 35 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGV------PVELYEMRP 35 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCC------cEEEEEccC
Confidence 3589999999999999999999999 899999643
No 289
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=85.73 E-value=2 Score=49.08 Aligned_cols=146 Identities=17% Similarity=0.192 Sum_probs=82.2
Q ss_pred ccccCchhhhhhhhhhhhHhhhhcCC------ccccc--eeeeeecCCCCCCCC-CCCCCCCCccCchhhhhhhcCHHHH
Q 001747 355 RAVLNPMAAMFGGIVGQEVVKACSGK------FHPLY--QFFYFDSVESLPTEP-LDSTEFKPINSRYDAQISVFGAKLQ 425 (1018)
Q Consensus 355 ~~el~pvaA~iGGiaAQEVIK~iT~k------f~Pi~--n~~~fD~~e~l~~~~-~~~~~~~~~~~rydrq~~~~G~~~q 425 (1018)
++.++.+.|.++|.-. -.+|.++.- -.|-. -.++||.-++.|..- ++...+ ..-|-+.- ........
T Consensus 49 ~~~~~~m~~~~~~~~~-~g~K~~~~~p~N~~~glp~~~g~i~l~d~~tG~~~ai~~d~~~l--T~~RTaa~-~~laa~~l 124 (326)
T TIGR02992 49 NGEVDVKTAYVPGLDG-FAIKVSPGFFDNPKLGLPSLNGMMVLLSSRTGLLQALLLDNGYL--TDVRTAAA-GAVAARHL 124 (326)
T ss_pred CCeEEEeehhcCCCCc-eEEEEecccCCccccCCCceeEEEEEEECCCCCceEEEcCCchH--HHHHHHHH-HHHHHHHh
Confidence 3466777777776321 347876642 23333 356788776655432 121111 01111111 11111111
Q ss_pred HHHhcCcEEEEccCcchHHHHHHHH-hcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCC
Q 001747 426 KKLEDAKVFIVGSGALGCEFLKNVA-LMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPR 504 (1018)
Q Consensus 426 ~~l~~~~v~vvG~GgiG~e~lk~La-~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~ 504 (1018)
.+-..++++|+|+|+.|...++.|+ ..|+ .+++|.+.+ ..|++.+++.+.+..+
T Consensus 125 a~~~~~~v~iiGaG~qA~~~~~al~~~~~i-----~~v~V~~R~-------------------~~~a~~~a~~~~~~~g- 179 (326)
T TIGR02992 125 AREDSSVVAIFGAGMQARLQLEALTLVRDI-----RSARIWARD-------------------SAKAEALALQLSSLLG- 179 (326)
T ss_pred CCCCCcEEEEECCCHHHHHHHHHHHHhCCc-----cEEEEECCC-------------------HHHHHHHHHHHHhhcC-
Confidence 1223568999999999999999997 5788 788887432 2477777777764332
Q ss_pred CeEEEEecccCCccccccccccccCccEEEEcccC
Q 001747 505 LNIEALQNRVGPETENVFDDTFWENITCVINALDN 539 (1018)
Q Consensus 505 ~~i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn 539 (1018)
+++.... +. .+.+.++|+|++|+-.
T Consensus 180 ~~v~~~~-----~~-----~~av~~aDiVvtaT~s 204 (326)
T TIGR02992 180 IDVTAAT-----DP-----RAAMSGADIIVTTTPS 204 (326)
T ss_pred ceEEEeC-----CH-----HHHhccCCEEEEecCC
Confidence 3443321 11 2345789999999843
No 290
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=85.72 E-value=2.8 Score=47.67 Aligned_cols=42 Identities=17% Similarity=0.122 Sum_probs=34.6
Q ss_pred cCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeC
Q 001747 23 YGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDE 65 (1018)
Q Consensus 23 ~G~~~q~~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~ 65 (1018)
|+......|..++|.|+|+|.+|.++|+.|...|+ ++..+|.
T Consensus 126 w~~~~~~~l~g~tvgIvG~G~IG~~vA~~l~afG~-~V~~~~~ 167 (312)
T PRK15469 126 WQPLPEYHREDFTIGILGAGVLGSKVAQSLQTWGF-PLRCWSR 167 (312)
T ss_pred cCCCCCCCcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence 54333346889999999999999999999999998 6777775
No 291
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=85.67 E-value=0.7 Score=52.28 Aligned_cols=33 Identities=24% Similarity=0.400 Sum_probs=29.4
Q ss_pred cCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCC
Q 001747 430 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 468 (1018)
Q Consensus 430 ~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D 468 (1018)
..||+|+|+||+|+-++-.|++.|. .+++++..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~------~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGL------PVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCC------CeEEEEec
Confidence 4689999999999999999999997 78888764
No 292
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=85.67 E-value=1.1 Score=51.26 Aligned_cols=74 Identities=9% Similarity=0.126 Sum_probs=48.5
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHhcC-C-----EEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhC----CC
Q 001747 34 SNILVSGM-QGLGAEIAKNLILAGV-K-----SVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELN----NA 102 (1018)
Q Consensus 34 s~VlIiG~-gglG~eiaKnLvlaGV-g-----~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elN----p~ 102 (1018)
.||.|+|+ |.+|+.+|-.|+..|+ + ++.|+|-..- +.|+++-+.-|+... +.
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~-----------------~~~a~g~a~Dl~~~~~~~~~~ 65 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQA-----------------LKALEGVAMELEDCAFPLLAE 65 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCc-----------------ccccceeehhhhhccccccCc
Confidence 58999999 9999999999999997 4 6999985210 112222222333322 33
Q ss_pred cEEEEEecCCChhhccCCceEEEccc
Q 001747 103 VVLSTLTSKLTKEQLSDFQAVVFTDI 128 (1018)
Q Consensus 103 V~v~~~~~~l~~~~~~~~dvVI~~~~ 128 (1018)
+.|. . -+.+.+++.|+||.|..
T Consensus 66 ~~i~--~--~~~~~~~daDivvitaG 87 (322)
T cd01338 66 IVIT--D--DPNVAFKDADWALLVGA 87 (322)
T ss_pred eEEe--c--CcHHHhCCCCEEEEeCC
Confidence 3332 2 23567889999998865
No 293
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=85.66 E-value=0.76 Score=47.87 Aligned_cols=161 Identities=19% Similarity=0.228 Sum_probs=73.8
Q ss_pred cEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCccc---CcccccccchHHHHHHHHHHhhCCCCeEE
Q 001747 432 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQF---LFRDWNIGQAKSTVAASAATSINPRLNIE 508 (1018)
Q Consensus 432 ~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqf---lf~~~diG~~Ka~va~~~l~~~np~~~i~ 508 (1018)
+|.|||+|.+|..++-.+++.|. .++++|.+.-.....-+.. |-+..+-|+...+.+...+.++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~------~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~------ 68 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY------EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS------ 68 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS------EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE------
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC------cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc------
Confidence 68999999999999999999998 9999998654332211110 00000112222222333333222
Q ss_pred EEecccCCccccccccccccCccEEEEccc-ChhHHHH----HHhhccccccceEecccCCcccc-eEEEeCcccccccC
Q 001747 509 ALQNRVGPETENVFDDTFWENITCVINALD-NVNARLY----VDQRCLYFQKPLLESGTLGAKCN-TQMVIPHLTENYGA 582 (1018)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~dvVi~alD-n~~ar~~----v~~~c~~~~~pli~~g~~g~~g~-~~v~ip~~t~~y~~ 582 (1018)
. ... + .+. .++|+||.|+- +.+.++- +++.|.. +. ++-+.|.++.-. ..-.+++-..+.+.
T Consensus 69 ~-~~d--------l-~~~-~~adlViEai~E~l~~K~~~~~~l~~~~~~-~~-ilasnTSsl~i~~la~~~~~p~R~ig~ 135 (180)
T PF02737_consen 69 F-TTD--------L-EEA-VDADLVIEAIPEDLELKQELFAELDEICPP-DT-ILASNTSSLSISELAAALSRPERFIGM 135 (180)
T ss_dssp E-ESS--------G-GGG-CTESEEEE-S-SSHHHHHHHHHHHHCCS-T-TS-EEEE--SSS-HHHHHTTSSTGGGEEEE
T ss_pred c-ccC--------H-HHH-hhhheehhhccccHHHHHHHHHHHHHHhCC-Cc-eEEecCCCCCHHHHHhccCcCceEEEE
Confidence 1 111 1 123 38999999985 3444443 4444422 22 333333332111 00000110111111
Q ss_pred CCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhh
Q 001747 583 SRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGL 617 (1018)
Q Consensus 583 ~~~~~~~~~p~Ct~~~~P~~~~h~i~wAk~~f~~~ 617 (1018)
+--.|....|+.-+-..|...+-+++|+++++..+
T Consensus 136 Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~~ 170 (180)
T PF02737_consen 136 HFFNPPHLMPLVEVVPGPKTSPETVDRVRALLRSL 170 (180)
T ss_dssp EE-SSTTT--EEEEEE-TTS-HHHHHHHHHHHHHT
T ss_pred ecccccccCceEEEeCCCCCCHHHHHHHHHHHHHC
Confidence 11112234566666667778888888888877655
No 294
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=85.64 E-value=1.9 Score=50.95 Aligned_cols=109 Identities=17% Similarity=0.095 Sum_probs=74.9
Q ss_pred eEEEEcCChHHH-HHHHHHHH----hcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEe
Q 001747 35 NILVSGMQGLGA-EIAKNLIL----AGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 109 (1018)
Q Consensus 35 ~VlIiG~gglG~-eiaKnLvl----aGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~ 109 (1018)
||.|||+|++-+ ++.+.|+. .++++|+|+|-|. ...|.. -...+.+.+.+.++.++|+...
T Consensus 2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~--~~rl~~------------v~~~~~~~~~~~~~~~~v~~t~ 67 (419)
T cd05296 2 KLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDE--EEKLEI------------VGALAKRMVKKAGLPIKVHLTT 67 (419)
T ss_pred EEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCCh--HHHHHH------------HHHHHHHHHHhhCCCeEEEEeC
Confidence 799999999865 77777776 5679999999763 222210 1233445566777777877765
Q ss_pred cCCChhhccCCceEEEccc--CHHHHHHHHHHHHhcCCCceeEEeeecceeEEEEe
Q 001747 110 SKLTKEQLSDFQAVVFTDI--SLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFC 163 (1018)
Q Consensus 110 ~~l~~~~~~~~dvVI~~~~--~~~~~~~ln~~c~~~~~~i~fi~~~~~G~~G~vf~ 163 (1018)
+ -++-+.+.|+||.+.. ..+.+..-.++..++| + +...+.|..|..+.
T Consensus 68 d--~~~al~gadfVi~~~~vg~~~~r~~de~i~~~~G--i--~gqET~G~GG~~~a 117 (419)
T cd05296 68 D--RREALEGADFVFTQIRVGGLEARALDERIPLKHG--V--IGQETTGAGGFAKA 117 (419)
T ss_pred C--HHHHhCCCCEEEEEEeeCCcchhhhhhhhHHHcC--C--ccccCCCcchHHHh
Confidence 4 3457889999998864 4555656666778887 3 46788888886553
No 295
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=85.62 E-value=1.5 Score=45.65 Aligned_cols=33 Identities=33% Similarity=0.381 Sum_probs=28.0
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCcc
Q 001747 35 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTV 68 (1018)
Q Consensus 35 ~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v 68 (1018)
+|.|+|+|.+|.-||-.++++|. .++++|.+.-
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChH
Confidence 69999999999999999999997 9999997543
No 296
>PRK07680 late competence protein ComER; Validated
Probab=85.61 E-value=4.6 Score=44.80 Aligned_cols=78 Identities=15% Similarity=0.244 Sum_probs=48.7
Q ss_pred eEEEEcCChHHHHHHHHHHHhcC---CEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEecC
Q 001747 35 NILVSGMQGLGAEIAKNLILAGV---KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 111 (1018)
Q Consensus 35 ~VlIiG~gglG~eiaKnLvlaGV---g~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~~~ 111 (1018)
+|.|||+|.+|..+++.|...|. ..++++|.+. .++ +.+.+..+.+.+. . +
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~-------------------~~~----~~~~~~~~g~~~~--~-~ 55 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTP-------------------AKA----YHIKERYPGIHVA--K-T 55 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCH-------------------HHH----HHHHHHcCCeEEE--C-C
Confidence 69999999999999999999984 4577766421 122 2233322333321 1 1
Q ss_pred CChhhccCCceEEEcccCHHHHHHHHHH
Q 001747 112 LTKEQLSDFQAVVFTDISLDKAIEFDDF 139 (1018)
Q Consensus 112 l~~~~~~~~dvVI~~~~~~~~~~~ln~~ 139 (1018)
..+.+.+.|+||+|..+......+.++
T Consensus 56 -~~~~~~~aDiVilav~p~~~~~vl~~l 82 (273)
T PRK07680 56 -IEEVISQSDLIFICVKPLDIYPLLQKL 82 (273)
T ss_pred -HHHHHHhCCEEEEecCHHHHHHHHHHH
Confidence 224567899999998655444444444
No 297
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=85.39 E-value=3.2 Score=47.17 Aligned_cols=33 Identities=24% Similarity=0.248 Sum_probs=28.2
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEe
Q 001747 31 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHD 64 (1018)
Q Consensus 31 L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD 64 (1018)
|++++|.|||+|.+|..++++|..+|+ .+++.+
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~-~Viv~~ 33 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGL-NVIVGL 33 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCC-eEEEEE
Confidence 568899999999999999999999998 454444
No 298
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=85.35 E-value=0.79 Score=51.46 Aligned_cols=83 Identities=10% Similarity=0.126 Sum_probs=53.6
Q ss_pred HhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCCeE
Q 001747 428 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNI 507 (1018)
Q Consensus 428 l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~~i 507 (1018)
+.+++++|+|+||.+..++-.|+..|+ .+|+|++.+. -...|++.+++.+....+ ..+
T Consensus 122 ~~~k~vlvlGaGGaarAi~~~l~~~g~-----~~i~i~nRt~----------------~~~~ka~~la~~~~~~~~-~~~ 179 (288)
T PRK12749 122 IKGKTMVLLGAGGASTAIGAQGAIEGL-----KEIKLFNRRD----------------EFFDKALAFAQRVNENTD-CVV 179 (288)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC-----CEEEEEeCCc----------------cHHHHHHHHHHHhhhccC-ceE
Confidence 567899999999999999999999999 8999986321 023577777777654332 222
Q ss_pred EEEecccCCccccccccccccCccEEEEcc
Q 001747 508 EALQNRVGPETENVFDDTFWENITCVINAL 537 (1018)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~dvVi~al 537 (1018)
.... +.. ...+ .+-..++|+||||+
T Consensus 180 ~~~~--~~~--~~~l-~~~~~~aDivINaT 204 (288)
T PRK12749 180 TVTD--LAD--QQAF-AEALASADILTNGT 204 (288)
T ss_pred EEec--hhh--hhhh-hhhcccCCEEEECC
Confidence 2221 110 0001 11235789999986
No 299
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=85.34 E-value=0.98 Score=56.25 Aligned_cols=89 Identities=18% Similarity=0.221 Sum_probs=62.7
Q ss_pred cCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCCeEEE
Q 001747 430 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEA 509 (1018)
Q Consensus 430 ~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~~i~~ 509 (1018)
+.+|+|+|+|-+|..+++.|...|+ .++++|.|.- +++.+ ++. +. ..
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~------~vvvID~d~~-------------------~v~~~----~~~--g~--~v 446 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV------KMTVLDHDPD-------------------HIETL----RKF--GM--KV 446 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC------CEEEEECCHH-------------------HHHHH----Hhc--CC--eE
Confidence 4689999999999999999999998 8999998863 22222 221 22 23
Q ss_pred EecccCCccccccccccccCccEEEEcccChhHHHHHHhhcccc
Q 001747 510 LQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYF 553 (1018)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~ 553 (1018)
+..+.+. ...+...-.+++|.||.++|+.+.-..+-..+++.
T Consensus 447 ~~GDat~--~~~L~~agi~~A~~vvv~~~d~~~n~~i~~~ar~~ 488 (621)
T PRK03562 447 FYGDATR--MDLLESAGAAKAEVLINAIDDPQTSLQLVELVKEH 488 (621)
T ss_pred EEEeCCC--HHHHHhcCCCcCCEEEEEeCCHHHHHHHHHHHHHh
Confidence 4433332 22333344578999999999999888877777665
No 300
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=85.34 E-value=1.1 Score=50.50 Aligned_cols=118 Identities=14% Similarity=0.150 Sum_probs=61.6
Q ss_pred cEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhh-CCCCeEEEE
Q 001747 432 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSI-NPRLNIEAL 510 (1018)
Q Consensus 432 ~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~-np~~~i~~~ 510 (1018)
+|.+||+|.+|..++++|+..|. .+++.|.+.-....+. +.|-.-+....+.+... ++++-+...
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~------~v~v~dr~~~~~~~~~--------~~g~~~~~~~~e~~~~~~~~dvvi~~v 67 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGH------EVVGYDRNPEAVEALA--------EEGATGADSLEELVAKLPAPRVVWLMV 67 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCC------eEEEEECCHHHHHHHH--------HCCCeecCCHHHHHhhcCCCCEEEEEe
Confidence 79999999999999999999997 7888887632111110 01111111112222221 244444443
Q ss_pred ecccCCccccccc--cccccCccEEEEccc-ChhHHHHHHhhccccccceEecccCCc
Q 001747 511 QNRVGPETENVFD--DTFWENITCVINALD-NVNARLYVDQRCLYFQKPLLESGTLGA 565 (1018)
Q Consensus 511 ~~~~~~~~~~~~~--~~~~~~~dvVi~alD-n~~ar~~v~~~c~~~~~pli~~g~~g~ 565 (1018)
... ...+.++. ...++.-++||++.- ++..-..+.+.+...++-++++...|.
T Consensus 68 ~~~--~~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~ 123 (301)
T PRK09599 68 PAG--EITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGG 123 (301)
T ss_pred cCC--cHHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcC
Confidence 321 01111111 012333456777643 333333455667777777777776665
No 301
>PLN02306 hydroxypyruvate reductase
Probab=85.29 E-value=0.84 Score=53.35 Aligned_cols=35 Identities=20% Similarity=0.352 Sum_probs=30.8
Q ss_pred HHhcCcEEEEccCcchHHHHHHHH-hcCcccCCCccEEEecC
Q 001747 427 KLEDAKVFIVGSGALGCEFLKNVA-LMGVSCGNQGKLTITDD 467 (1018)
Q Consensus 427 ~l~~~~v~vvG~GgiG~e~lk~La-~~Gv~~~~~g~i~ivD~ 467 (1018)
.|.+++|.|||.|.||.++++.|. -+|+ ++..+|.
T Consensus 162 ~L~gktvGIiG~G~IG~~vA~~l~~~fGm------~V~~~d~ 197 (386)
T PLN02306 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM------NLIYYDL 197 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhcCCC------EEEEECC
Confidence 588999999999999999999985 6777 7888875
No 302
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=85.28 E-value=1.1 Score=52.97 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=32.0
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecC
Q 001747 427 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 467 (1018)
Q Consensus 427 ~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~ 467 (1018)
.|.+++|.|||.|.||..+++.+...|+ ++..+|.
T Consensus 148 ~L~gktvGIiG~G~IG~~vA~~~~~fGm------~V~~~d~ 182 (409)
T PRK11790 148 EVRGKTLGIVGYGHIGTQLSVLAESLGM------RVYFYDI 182 (409)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEECC
Confidence 5889999999999999999999999998 8888884
No 303
>PRK05867 short chain dehydrogenase; Provisional
Probab=85.22 E-value=1.5 Score=47.57 Aligned_cols=34 Identities=18% Similarity=0.331 Sum_probs=29.1
Q ss_pred HhcCcEEEEcc-CcchHHHHHHHHhcCcccCCCccEEEecC
Q 001747 428 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 467 (1018)
Q Consensus 428 l~~~~v~vvG~-GgiG~e~lk~La~~Gv~~~~~g~i~ivD~ 467 (1018)
+.+++++|.|+ ||||.++++.|+..|. ++++++.
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~------~V~~~~r 41 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGA------QVAIAAR 41 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEcC
Confidence 56788999995 8999999999999998 7777653
No 304
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=85.22 E-value=3.7 Score=46.80 Aligned_cols=85 Identities=15% Similarity=0.166 Sum_probs=54.8
Q ss_pred HHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEE
Q 001747 28 MRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLST 107 (1018)
Q Consensus 28 q~~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~ 107 (1018)
...++.++|.|+|+|.+|.++|+.|.-.| ..|.-...... +-+...+...+
T Consensus 157 g~~~~gK~vgilG~G~IG~~ia~rL~~Fg-~~i~y~~r~~~-------------------~~~~~~~~~~~--------- 207 (336)
T KOG0069|consen 157 GYDLEGKTVGILGLGRIGKAIAKRLKPFG-CVILYHSRTQL-------------------PPEEAYEYYAE--------- 207 (336)
T ss_pred cccccCCEEEEecCcHHHHHHHHhhhhcc-ceeeeecccCC-------------------chhhHHHhccc---------
Confidence 46789999999999999999999999877 44433321110 11122222222
Q ss_pred EecCCC-hhhccCCceEEEcc-cCHHHHHHHHHH-HHhcC
Q 001747 108 LTSKLT-KEQLSDFQAVVFTD-ISLDKAIEFDDF-CHNHQ 144 (1018)
Q Consensus 108 ~~~~l~-~~~~~~~dvVI~~~-~~~~~~~~ln~~-c~~~~ 144 (1018)
.++ ++.+.+.|+||+|. ++.+++..+|.- |...+
T Consensus 208 ---~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk 244 (336)
T KOG0069|consen 208 ---FVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMK 244 (336)
T ss_pred ---ccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcC
Confidence 222 46788999877654 578888888863 44444
No 305
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.16 E-value=3.9 Score=48.81 Aligned_cols=94 Identities=16% Similarity=0.197 Sum_probs=60.0
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEec
Q 001747 31 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 110 (1018)
Q Consensus 31 L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~~ 110 (1018)
+.+++|+|+|.|+.|..+|+.|...|. .+++.|..... . ...+|.+....+. ....
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~-~v~~~d~~~~~-----------------~----~~~~l~~~~~gi~--~~~g 58 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGA-EVAAYDAELKP-----------------E----RVAQIGKMFDGLV--FYTG 58 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCCc-----------------h----hHHHHhhccCCcE--EEeC
Confidence 457899999999999999999999997 78888854321 0 0123433222333 3333
Q ss_pred CCChhhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEE
Q 001747 111 KLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIK 151 (1018)
Q Consensus 111 ~l~~~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~ 151 (1018)
...+..+.++|+||.+..=.+. ..+-..+++++ +|++.
T Consensus 59 ~~~~~~~~~~d~vv~spgi~~~-~p~~~~a~~~~--i~v~~ 96 (445)
T PRK04308 59 RLKDALDNGFDILALSPGISER-QPDIEAFKQNG--GRVLG 96 (445)
T ss_pred CCCHHHHhCCCEEEECCCCCCC-CHHHHHHHHcC--CcEEE
Confidence 3344456789999987651111 12344567788 88873
No 306
>PRK08618 ornithine cyclodeaminase; Validated
Probab=85.09 E-value=2.6 Score=48.13 Aligned_cols=78 Identities=15% Similarity=0.182 Sum_probs=55.9
Q ss_pred hcCeEEEEcCChHHHHHHHHHH-HhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEec
Q 001747 32 FASNILVSGMQGLGAEIAKNLI-LAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 110 (1018)
Q Consensus 32 ~~s~VlIiG~gglG~eiaKnLv-laGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~~ 110 (1018)
...+|+|+|+|+.|...+..+. ..|+++++++|.+ ..|++..++++++..+ +++....+
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~-------------------~~~a~~~~~~~~~~~~-~~~~~~~~ 185 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRT-------------------FEKAYAFAQEIQSKFN-TEIYVVNS 185 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCC-------------------HHHHHHHHHHHHHhcC-CcEEEeCC
Confidence 4678999999999999998875 5799999999753 2477777777765432 33333321
Q ss_pred CCChhhccCCceEEEcccCHH
Q 001747 111 KLTKEQLSDFQAVVFTDISLD 131 (1018)
Q Consensus 111 ~l~~~~~~~~dvVI~~~~~~~ 131 (1018)
.++.+.+.|+||.|+.+..
T Consensus 186 --~~~~~~~aDiVi~aT~s~~ 204 (325)
T PRK08618 186 --ADEAIEEADIIVTVTNAKT 204 (325)
T ss_pred --HHHHHhcCCEEEEccCCCC
Confidence 1346788999999886543
No 307
>PRK06523 short chain dehydrogenase; Provisional
Probab=85.09 E-value=2.1 Score=46.52 Aligned_cols=76 Identities=14% Similarity=0.220 Sum_probs=48.3
Q ss_pred HHhcCcEEEEc-cCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchH-HHHHHHHHHhhCCC
Q 001747 427 KLEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAK-STVAASAATSINPR 504 (1018)
Q Consensus 427 ~l~~~~v~vvG-~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~K-a~va~~~l~~~np~ 504 (1018)
++.+++++|.| .||||.++++.|+..|. ++++++.+.-+ .+.....+...|+.... .+.+.+.+.+..+.
T Consensus 6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~------~v~~~~r~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 77 (260)
T PRK06523 6 ELAGKRALVTGGTKGIGAATVARLLEAGA------RVVTTARSRPD--DLPEGVEFVAADLTTAEGCAAVARAVLERLGG 77 (260)
T ss_pred CCCCCEEEEECCCCchhHHHHHHHHHCCC------EEEEEeCChhh--hcCCceeEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 46788999999 58999999999999998 78888876432 23333334455666543 23333444444444
Q ss_pred CeEEEE
Q 001747 505 LNIEAL 510 (1018)
Q Consensus 505 ~~i~~~ 510 (1018)
+.+-.+
T Consensus 78 id~vi~ 83 (260)
T PRK06523 78 VDILVH 83 (260)
T ss_pred CCEEEE
Confidence 444443
No 308
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=85.06 E-value=4.8 Score=45.61 Aligned_cols=31 Identities=32% Similarity=0.353 Sum_probs=28.2
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCEEEEEeCC
Q 001747 35 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 66 (1018)
Q Consensus 35 ~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d 66 (1018)
+|.|+|+|.+|+.++.+|..+|. .++++|.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~-~V~~~~r~ 33 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGH-DVTLWARD 33 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-EEEEEECC
Confidence 79999999999999999999997 58888864
No 309
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.02 E-value=2.9 Score=50.34 Aligned_cols=92 Identities=16% Similarity=0.038 Sum_probs=59.7
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEec
Q 001747 31 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 110 (1018)
Q Consensus 31 L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~~ 110 (1018)
+++++|+|+|+|-.|..+++-|...|. .+++.|.+.... ... ...|.+ . +.....
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~-~v~~~d~~~~~~---------------~~~----~~~l~~---~--~~~~~~ 60 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLP-AQALTLFCNAVE---------------ARE----VGALAD---A--ALLVET 60 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCC-EEEEEcCCCccc---------------chH----HHHHhh---c--CEEEeC
Confidence 467899999999999999999999998 578888643310 001 112433 1 222223
Q ss_pred CCChhhccCCceEEEccc-CHHHHHHHHHHHHhcCCCceeEE
Q 001747 111 KLTKEQLSDFQAVVFTDI-SLDKAIEFDDFCHNHQPAISFIK 151 (1018)
Q Consensus 111 ~l~~~~~~~~dvVI~~~~-~~~~~~~ln~~c~~~~~~i~fi~ 151 (1018)
...++.+.++|+||.+.. +.. ..+-..+++.+ ||++.
T Consensus 61 ~~~~~~~~~~d~vV~SpgI~~~--~p~~~~a~~~~--i~i~~ 98 (468)
T PRK04690 61 EASAQRLAAFDVVVKSPGISPY--RPEALAAAARG--TPFIG 98 (468)
T ss_pred CCChHHccCCCEEEECCCCCCC--CHHHHHHHHcC--CcEEE
Confidence 334567788999998764 221 22344567888 88885
No 310
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=84.92 E-value=2.9 Score=49.75 Aligned_cols=95 Identities=14% Similarity=0.183 Sum_probs=61.3
Q ss_pred HhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCCeE
Q 001747 428 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNI 507 (1018)
Q Consensus 428 l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~~i 507 (1018)
+...+++|+|+|.+|..+++.|...|. .++++|.|.= +. +.+.+..+++.
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~------~v~vid~~~~-------------------~~----~~~~~~~~~~~- 278 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGY------SVKLIERDPE-------------------RA----EELAEELPNTL- 278 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC------eEEEEECCHH-------------------HH----HHHHHHCCCCe-
Confidence 356789999999999999999999997 8899976531 11 11222222322
Q ss_pred EEEecccCCccccccccccccCccEEEEcccChhHHHHHHhhcccccc
Q 001747 508 EALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQK 555 (1018)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~~~ 555 (1018)
.+...... ...+.....+++|.||.++++...-..+...|+..+.
T Consensus 279 -~i~gd~~~--~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~~~~ 323 (453)
T PRK09496 279 -VLHGDGTD--QELLEEEGIDEADAFIALTNDDEANILSSLLAKRLGA 323 (453)
T ss_pred -EEECCCCC--HHHHHhcCCccCCEEEECCCCcHHHHHHHHHHHHhCC
Confidence 23332221 1223234467899999999988777776666665543
No 311
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=84.92 E-value=1.6 Score=49.44 Aligned_cols=34 Identities=21% Similarity=0.213 Sum_probs=29.6
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCc
Q 001747 33 ASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 67 (1018)
Q Consensus 33 ~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~ 67 (1018)
..+|+|+|+|++|+-+|..|..+|. .++++..+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~-~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGF-DVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCC
Confidence 4689999999999999999999994 888887654
No 312
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=84.91 E-value=2.1 Score=46.01 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=30.7
Q ss_pred HhcCcEEEEc-cCcchHHHHHHHHhcCcccCCCccEEEecCCc
Q 001747 428 LEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDV 469 (1018)
Q Consensus 428 l~~~~v~vvG-~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~ 469 (1018)
+++++|+|.| +|++|..+++.|+..|. ++++++.+.
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~------~V~~~~r~~ 40 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGA------EVIVVDICG 40 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCC------EEEEEeCCH
Confidence 5678899998 79999999999999997 788877653
No 313
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=84.88 E-value=3.5 Score=45.94 Aligned_cols=31 Identities=19% Similarity=0.210 Sum_probs=28.1
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCEEEEEeCC
Q 001747 35 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 66 (1018)
Q Consensus 35 ~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d 66 (1018)
+|.|||+|.+|..+++.|...|. .++++|.+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~ 32 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRR 32 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECC
Confidence 69999999999999999999996 78888863
No 314
>PRK09186 flagellin modification protein A; Provisional
Probab=84.83 E-value=2.3 Score=45.97 Aligned_cols=33 Identities=24% Similarity=0.486 Sum_probs=27.8
Q ss_pred HhcCcEEEEc-cCcchHHHHHHHHhcCcccCCCccEEEec
Q 001747 428 LEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITD 466 (1018)
Q Consensus 428 l~~~~v~vvG-~GgiG~e~lk~La~~Gv~~~~~g~i~ivD 466 (1018)
+.+++|+|.| .|+||.++++.|+..|. ++++++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~------~v~~~~ 35 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGG------IVIAAD 35 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEe
Confidence 4568899998 48999999999999997 677664
No 315
>PRK05854 short chain dehydrogenase; Provisional
Probab=84.82 E-value=4.2 Score=46.04 Aligned_cols=59 Identities=27% Similarity=0.351 Sum_probs=41.8
Q ss_pred HhhcCeEEEEc-CChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEE
Q 001747 30 RLFASNILVSG-MQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTL 108 (1018)
Q Consensus 30 ~L~~s~VlIiG-~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~ 108 (1018)
.|++++|+|.| .+|+|.++|+.|+..|. ++.+++.+ ..+++.+.+.|.+.++..++...
T Consensus 11 ~l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~-------------------~~~~~~~~~~l~~~~~~~~v~~~ 70 (313)
T PRK05854 11 DLSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRN-------------------RAKGEAAVAAIRTAVPDAKLSLR 70 (313)
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHHhCCCCceEEE
Confidence 35678899987 67999999999999996 67776532 23566666777766665444433
No 316
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=84.81 E-value=4.5 Score=45.08 Aligned_cols=82 Identities=22% Similarity=0.225 Sum_probs=49.9
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhcC---CEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEE
Q 001747 32 FASNILVSGMQGLGAEIAKNLILAGV---KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTL 108 (1018)
Q Consensus 32 ~~s~VlIiG~gglG~eiaKnLvlaGV---g~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~ 108 (1018)
...+|.+||+|.+|..++++|...|+ ..++++|... ..+++ .+.+.. .+++ .
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~------------------~~~~~----~l~~~~-g~~~--~ 56 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSN------------------ETRLQ----ELHQKY-GVKG--T 56 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCC------------------HHHHH----HHHHhc-CceE--e
Confidence 44589999999999999999999983 3444443210 01222 222211 2322 2
Q ss_pred ecCCChhhccCCceEEEcccCHHHHHHHHHHH
Q 001747 109 TSKLTKEQLSDFQAVVFTDISLDKAIEFDDFC 140 (1018)
Q Consensus 109 ~~~l~~~~~~~~dvVI~~~~~~~~~~~ln~~c 140 (1018)
. + ..+...+.|+||+|..+......+.++.
T Consensus 57 ~-~-~~e~~~~aDvVilav~p~~~~~vl~~l~ 86 (279)
T PRK07679 57 H-N-KKELLTDANILFLAMKPKDVAEALIPFK 86 (279)
T ss_pred C-C-HHHHHhcCCEEEEEeCHHHHHHHHHHHH
Confidence 1 1 1234678899999988776666666554
No 317
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=84.78 E-value=1.9 Score=47.58 Aligned_cols=38 Identities=13% Similarity=0.255 Sum_probs=29.0
Q ss_pred hcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCC
Q 001747 429 EDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 468 (1018)
Q Consensus 429 ~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D 468 (1018)
.+.||.+||+|.+|+.+++.|...|... ..+++++|.+
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~--~~~i~~~~~~ 39 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIG--KENIYYHTPS 39 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCC--cceEEEECCC
Confidence 3468999999999999999999988521 1247776653
No 318
>PRK06223 malate dehydrogenase; Reviewed
Probab=84.71 E-value=6.2 Score=44.59 Aligned_cols=32 Identities=31% Similarity=0.412 Sum_probs=29.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCEEEEEeC
Q 001747 34 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDE 65 (1018)
Q Consensus 34 s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~ 65 (1018)
.||.|+|+|.+|..+|-.++..|++.+.|+|.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~ 34 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDI 34 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEEC
Confidence 58999999999999999999999779999996
No 319
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=84.59 E-value=2.7 Score=47.37 Aligned_cols=32 Identities=22% Similarity=0.283 Sum_probs=28.7
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCc
Q 001747 35 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 67 (1018)
Q Consensus 35 ~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~ 67 (1018)
+|.+||+|.+|..++++|...|. .++++|.+.
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~-~v~v~dr~~ 33 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGH-EVVGYDVNQ 33 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCC-EEEEEECCH
Confidence 69999999999999999999997 688888753
No 320
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=84.58 E-value=2.4 Score=46.58 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=21.6
Q ss_pred cEEEEccCcchHHHHHHHHhcCc
Q 001747 432 KVFIVGSGALGCEFLKNVALMGV 454 (1018)
Q Consensus 432 ~v~vvG~GgiG~e~lk~La~~Gv 454 (1018)
+|.+||+|.+|..+++.|...|.
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~ 24 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPA 24 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCC
Confidence 69999999999999999999886
No 321
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=84.54 E-value=3.3 Score=46.54 Aligned_cols=30 Identities=30% Similarity=0.395 Sum_probs=27.1
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCEEEEEeC
Q 001747 35 NILVSGMQGLGAEIAKNLILAGVKSVTLHDE 65 (1018)
Q Consensus 35 ~VlIiG~gglG~eiaKnLvlaGVg~itlvD~ 65 (1018)
+|+|+|+|++|+.++..|..+|. .+++++.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-ceEEEec
Confidence 79999999999999999999995 6888874
No 322
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=84.50 E-value=8 Score=39.54 Aligned_cols=93 Identities=22% Similarity=0.240 Sum_probs=58.7
Q ss_pred EEEEcC-ChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEecCCCh
Q 001747 36 ILVSGM-QGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTK 114 (1018)
Q Consensus 36 VlIiG~-gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~~~l~~ 114 (1018)
|+|+|+ |.+|..+++.|+..| .+++.+=.+ ..|++. .+.++ +...++.+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~R~-------------------~~~~~~--------~~~~~--~~~~d~~d 50 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTALVRS-------------------PSKAED--------SPGVE--IIQGDLFD 50 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEESS-------------------GGGHHH--------CTTEE--EEESCTTC
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEEEecC-------------------chhccc--------ccccc--cceeeehh
Confidence 799997 999999999999999 466664221 112221 44444 44444432
Q ss_pred -----hhccCCceEEEcccC----HHHHHHHHHHHHhcCCCceeEEeeecceeE
Q 001747 115 -----EQLSDFQAVVFTDIS----LDKAIEFDDFCHNHQPAISFIKAEVRGLFG 159 (1018)
Q Consensus 115 -----~~~~~~dvVI~~~~~----~~~~~~ln~~c~~~~~~i~fi~~~~~G~~G 159 (1018)
+.++++|+||.+..+ ......+-+.|++.+. ..+|..++.|.++
T Consensus 51 ~~~~~~al~~~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~-~~~v~~s~~~~~~ 103 (183)
T PF13460_consen 51 PDSVKAALKGADAVIHAAGPPPKDVDAAKNIIEAAKKAGV-KRVVYLSSAGVYR 103 (183)
T ss_dssp HHHHHHHHTTSSEEEECCHSTTTHHHHHHHHHHHHHHTTS-SEEEEEEETTGTT
T ss_pred hhhhhhhhhhcchhhhhhhhhccccccccccccccccccc-ccceeeeccccCC
Confidence 346789999988652 3344566778888872 2456555555443
No 323
>PRK09242 tropinone reductase; Provisional
Probab=84.43 E-value=5.1 Score=43.53 Aligned_cols=63 Identities=21% Similarity=0.318 Sum_probs=45.2
Q ss_pred HhhcCeEEEEcC-ChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEE
Q 001747 30 RLFASNILVSGM-QGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTL 108 (1018)
Q Consensus 30 ~L~~s~VlIiG~-gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~ 108 (1018)
+|++++++|.|+ ||+|.++++.|+..|. ++++++.+ ..+++...+.+.+.+|..++..+
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~ 65 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGA-DVLIVARD-------------------ADALAQARDELAEEFPEREVHGL 65 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC-------------------HHHHHHHHHHHHhhCCCCeEEEE
Confidence 467789999985 7999999999999997 67777642 12445556667666676666655
Q ss_pred ecCC
Q 001747 109 TSKL 112 (1018)
Q Consensus 109 ~~~l 112 (1018)
..++
T Consensus 66 ~~Dl 69 (257)
T PRK09242 66 AADV 69 (257)
T ss_pred ECCC
Confidence 5444
No 324
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=84.42 E-value=1.3 Score=50.50 Aligned_cols=34 Identities=15% Similarity=0.276 Sum_probs=28.6
Q ss_pred HHhcCcEEEEccCcchHHHHHHHH-hcCcccCCCccEEEec
Q 001747 427 KLEDAKVFIVGSGALGCEFLKNVA-LMGVSCGNQGKLTITD 466 (1018)
Q Consensus 427 ~l~~~~v~vvG~GgiG~e~lk~La-~~Gv~~~~~g~i~ivD 466 (1018)
.|.++++.|||.|.||.++++.|. -.|+ ++...|
T Consensus 142 ~L~gktvGIiG~G~IG~~va~~l~~~fgm------~V~~~~ 176 (323)
T PRK15409 142 DVHHKTLGIVGMGRIGMALAQRAHFGFNM------PILYNA 176 (323)
T ss_pred CCCCCEEEEEcccHHHHHHHHHHHhcCCC------EEEEEC
Confidence 588999999999999999999987 5665 666655
No 325
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=84.36 E-value=3.5 Score=46.78 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=28.9
Q ss_pred eEEEEcCChHHHHHHHHHHHhcC-CEEEEEeC
Q 001747 35 NILVSGMQGLGAEIAKNLILAGV-KSVTLHDE 65 (1018)
Q Consensus 35 ~VlIiG~gglG~eiaKnLvlaGV-g~itlvD~ 65 (1018)
+|.|||+|.+|+.+|-.|+..|+ ..+.++|.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~ 33 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDI 33 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEEC
Confidence 69999999999999999999996 78999995
No 326
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=84.34 E-value=1.9 Score=46.42 Aligned_cols=34 Identities=32% Similarity=0.478 Sum_probs=29.6
Q ss_pred HhcCcEEEEcc-CcchHHHHHHHHhcCcccCCCccEEEecC
Q 001747 428 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 467 (1018)
Q Consensus 428 l~~~~v~vvG~-GgiG~e~lk~La~~Gv~~~~~g~i~ivD~ 467 (1018)
+.+++++|+|+ |+||..+++.|+..|. +++++|.
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~------~vi~~~r 37 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGA------KLALIDL 37 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEeC
Confidence 56789999996 9999999999999997 6888874
No 327
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=84.30 E-value=2 Score=44.91 Aligned_cols=110 Identities=21% Similarity=0.174 Sum_probs=64.5
Q ss_pred cEEEEccCcchHH-HHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHH-HHHHHHHHhhCCCCeEEE
Q 001747 432 KVFIVGSGALGCE-FLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKS-TVAASAATSINPRLNIEA 509 (1018)
Q Consensus 432 ~v~vvG~GgiG~e-~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka-~va~~~l~~~np~~~i~~ 509 (1018)
||.+||+|+.-.. .+..+...--. -+.++|.+.|-|. .|+- .+ ..+.+.+++.+++++|+.
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~-l~~~ei~L~Did~------~RL~----------~~~~~~~~~~~~~~~~~~v~~ 63 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEE-LSGSEIVLMDIDE------ERLE----------IVERLARRMVEEAGADLKVEA 63 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTT-STEEEEEEE-SCH------HHHH----------HHHHHHHHHHHHCTTSSEEEE
T ss_pred CEEEECCchHhhHHHHHHHHhcCcc-CCCcEEEEEcCCH------HHHH----------HHHHHHHHHHHhcCCCeEEEE
Confidence 6899999998765 33333322111 1126899998775 1211 12 234455567778888877
Q ss_pred EecccCCccccccccccccCccEEEEccc--ChhHHHHHHhhccccccceEecccCCcccc
Q 001747 510 LQNRVGPETENVFDDTFWENITCVINALD--NVNARLYVDQRCLYFQKPLLESGTLGAKCN 568 (1018)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~dvVi~alD--n~~ar~~v~~~c~~~~~pli~~g~~g~~g~ 568 (1018)
...+ .+-++++|+||+++- ..++|..=.+.+.++|+.-...-|.|..|-
T Consensus 64 ttd~----------~eAl~gADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~ 114 (183)
T PF02056_consen 64 TTDR----------REALEGADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGF 114 (183)
T ss_dssp ESSH----------HHHHTTESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHH
T ss_pred eCCH----------HHHhCCCCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHH
Confidence 6432 345689999999873 446777666677777766555555665554
No 328
>PRK07478 short chain dehydrogenase; Provisional
Probab=84.28 E-value=1.8 Score=46.90 Aligned_cols=34 Identities=26% Similarity=0.325 Sum_probs=28.8
Q ss_pred HhcCcEEEEc-cCcchHHHHHHHHhcCcccCCCccEEEecC
Q 001747 428 LEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDD 467 (1018)
Q Consensus 428 l~~~~v~vvG-~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~ 467 (1018)
+.+++++|.| .||||.++++.|+..|. ++++++.
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G~------~v~~~~r 38 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGA------KVVVGAR 38 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC------EEEEEeC
Confidence 5677899998 58999999999999998 6777764
No 329
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=84.12 E-value=6.8 Score=41.99 Aligned_cols=84 Identities=15% Similarity=0.133 Sum_probs=49.4
Q ss_pred eEEEEc-CChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCC--CcEEEEEecC
Q 001747 35 NILVSG-MQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNN--AVVLSTLTSK 111 (1018)
Q Consensus 35 ~VlIiG-~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp--~V~v~~~~~~ 111 (1018)
+|.||| +|.+|+.+++.|+..| ..+++++.+. .+++...+....... .+.+.+....
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G-~~V~v~~r~~-------------------~~~~~l~~~~~~~~~~~g~~~~~~~~~ 61 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAG-NKIIIGSRDL-------------------EKAEEAAAKALEELGHGGSDIKVTGAD 61 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCC-CEEEEEEcCH-------------------HHHHHHHHHHHhhccccCCCceEEEeC
Confidence 699997 8999999999999999 5777776421 233333332211111 0111111111
Q ss_pred CChhhccCCceEEEcccCHHHHHHHHHH
Q 001747 112 LTKEQLSDFQAVVFTDISLDKAIEFDDF 139 (1018)
Q Consensus 112 l~~~~~~~~dvVI~~~~~~~~~~~ln~~ 139 (1018)
..+.+.+.|+||+|..+......+.++
T Consensus 62 -~~ea~~~aDvVilavp~~~~~~~l~~l 88 (219)
T TIGR01915 62 -NAEAAKRADVVILAVPWDHVLKTLESL 88 (219)
T ss_pred -hHHHHhcCCEEEEECCHHHHHHHHHHH
Confidence 234577899999998765544444444
No 330
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=84.09 E-value=3 Score=46.27 Aligned_cols=89 Identities=20% Similarity=0.187 Sum_probs=52.0
Q ss_pred CcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCCeEEEE
Q 001747 431 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEAL 510 (1018)
Q Consensus 431 ~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~~i~~~ 510 (1018)
.||.|||+|.+|..+++.|...+... .-+.++|.+ ..|++.+++ ... . ..+
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~---elv~v~d~~-------------------~~~a~~~a~---~~~--~--~~~ 52 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINA---ELYAFYDRN-------------------LEKAENLAS---KTG--A--KAC 52 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCe---EEEEEECCC-------------------HHHHHHHHH---hcC--C--eeE
Confidence 47999999999999999998764200 234455543 123333332 111 1 111
Q ss_pred ecccCCccccccccccccCccEEEEcccChhHHHHHHhhccccccceEe
Q 001747 511 QNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLE 559 (1018)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~~~pli~ 559 (1018)
.+. ++++.+.|+|+.|+-....+.+. ..+.+.++.++.
T Consensus 53 -----~~~-----~ell~~~DvVvi~a~~~~~~~~~-~~al~~Gk~Vvv 90 (265)
T PRK13304 53 -----LSI-----DELVEDVDLVVECASVNAVEEVV-PKSLENGKDVII 90 (265)
T ss_pred -----CCH-----HHHhcCCCEEEEcCChHHHHHHH-HHHHHcCCCEEE
Confidence 111 23347899999998544444444 455667888775
No 331
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=84.07 E-value=5.4 Score=44.45 Aligned_cols=80 Identities=16% Similarity=0.138 Sum_probs=49.3
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcC---CEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEec
Q 001747 34 SNILVSGMQGLGAEIAKNLILAGV---KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 110 (1018)
Q Consensus 34 s~VlIiG~gglG~eiaKnLvlaGV---g~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~~ 110 (1018)
.+|.|||+|.+|..+++.|...|. .++.+++.+.- .+++ .+.+..+.+.+. .
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~------------------~~~~----~l~~~~~~~~~~---~ 56 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKN------------------EHFN----QLYDKYPTVELA---D 56 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcH------------------HHHH----HHHHHcCCeEEe---C
Confidence 369999999999999999999983 46777664210 1211 222222333221 1
Q ss_pred CCChhhccCCceEEEcccCHHHHHHHHHH
Q 001747 111 KLTKEQLSDFQAVVFTDISLDKAIEFDDF 139 (1018)
Q Consensus 111 ~l~~~~~~~~dvVI~~~~~~~~~~~ln~~ 139 (1018)
+ ..+.+.+.|+||+|..+......+.++
T Consensus 57 ~-~~e~~~~aDvVilavpp~~~~~vl~~l 84 (277)
T PRK06928 57 N-EAEIFTKCDHSFICVPPLAVLPLLKDC 84 (277)
T ss_pred C-HHHHHhhCCEEEEecCHHHHHHHHHHH
Confidence 1 224567899999998765555445444
No 332
>PRK07340 ornithine cyclodeaminase; Validated
Probab=84.04 E-value=1.5 Score=49.72 Aligned_cols=135 Identities=16% Similarity=0.206 Sum_probs=79.8
Q ss_pred cccCchhhhhhhhhhhhHhhhhcC------Cccccc--eeeeeecCCCCCCCCCCCCCCCCccCchhhhhhh-----cCH
Q 001747 356 AVLNPMAAMFGGIVGQEVVKACSG------KFHPLY--QFFYFDSVESLPTEPLDSTEFKPINSRYDAQISV-----FGA 422 (1018)
Q Consensus 356 ~el~pvaA~iGGiaAQEVIK~iT~------kf~Pi~--n~~~fD~~e~l~~~~~~~~~~~~~~~rydrq~~~-----~G~ 422 (1018)
+.+..|.|..+++. .+|.++. +-.|-. -.++||.-++.|..-++...+ -.+|. .+.
T Consensus 49 ~~~~~mpa~~~~~~---g~K~~~~~p~N~~~glp~~~g~i~l~d~~tG~p~a~~d~~~l--------T~~RTaA~sala~ 117 (304)
T PRK07340 49 GVLLSMPASAADLA---ITKLVTVCPGNAARGLPTIQGEVVVADAATGERLFLLDGPTV--------TGRRTAAVSLLAA 117 (304)
T ss_pred CEEEEEeeccCCcc---EEEEEEeCCCCccCCCCcceEEEEEEECCCCcEEEEEcChhH--------HHHHHHHHHHHHH
Confidence 34555555555543 3786652 122332 256788777766533322221 11111 222
Q ss_pred HHHHHHhcCcEEEEccCcchHHHHHHHHh-cCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhh
Q 001747 423 KLQKKLEDAKVFIVGSGALGCEFLKNVAL-MGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSI 501 (1018)
Q Consensus 423 ~~q~~l~~~~v~vvG~GgiG~e~lk~La~-~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~ 501 (1018)
+...+...++++|+|+|+.|...++.+.. .|+ .++.|.|.+ ..|++.+++.+.+.
T Consensus 118 ~~La~~~~~~v~IiGaG~qa~~~~~al~~~~~~-----~~v~v~~r~-------------------~~~a~~~a~~~~~~ 173 (304)
T PRK07340 118 RTLAPAPPGDLLLIGTGVQARAHLEAFAAGLPV-----RRVWVRGRT-------------------AASAAAFCAHARAL 173 (304)
T ss_pred HHhCCCCCCEEEEECCcHHHHHHHHHHHHhCCC-----CEEEEEcCC-------------------HHHHHHHHHHHHhc
Confidence 33334456899999999999999999975 677 678887543 44777788877654
Q ss_pred CCCCeEEEEecccCCccccccccccccCccEEEEccc
Q 001747 502 NPRLNIEALQNRVGPETENVFDDTFWENITCVINALD 538 (1018)
Q Consensus 502 np~~~i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alD 538 (1018)
.. .+. . .+. ++...++|+|++|+-
T Consensus 174 ~~--~~~-~-----~~~-----~~av~~aDiVitaT~ 197 (304)
T PRK07340 174 GP--TAE-P-----LDG-----EAIPEAVDLVVTATT 197 (304)
T ss_pred CC--eeE-E-----CCH-----HHHhhcCCEEEEccC
Confidence 32 222 1 111 234579999999974
No 333
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=83.98 E-value=8.2 Score=43.55 Aligned_cols=31 Identities=32% Similarity=0.370 Sum_probs=28.4
Q ss_pred EEEEcCChHHHHHHHHHHHhcCCEEEEEeCC
Q 001747 36 ILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 66 (1018)
Q Consensus 36 VlIiG~gglG~eiaKnLvlaGVg~itlvD~d 66 (1018)
|.|+|+|.+|+-+|-.|++.|.+.++|+|.+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~ 31 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCC
Confidence 5799999999999999999997799999975
No 334
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=83.97 E-value=3.7 Score=48.56 Aligned_cols=37 Identities=19% Similarity=0.269 Sum_probs=33.2
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCc
Q 001747 30 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 67 (1018)
Q Consensus 30 ~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~ 67 (1018)
.+.+++|+|+|+|.+|..+|+.|...|+ +++++|.+.
T Consensus 209 ~l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp 245 (425)
T PRK05476 209 LIAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDP 245 (425)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCc
Confidence 3589999999999999999999999999 799988654
No 335
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.93 E-value=2.6 Score=50.28 Aligned_cols=92 Identities=18% Similarity=0.126 Sum_probs=59.1
Q ss_pred Hhhc-CeEEEEcCChHHHHHHHHHHHhcC-CEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEE
Q 001747 30 RLFA-SNILVSGMQGLGAEIAKNLILAGV-KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLST 107 (1018)
Q Consensus 30 ~L~~-s~VlIiG~gglG~eiaKnLvlaGV-g~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~ 107 (1018)
++.+ .+|+|+|+|+.|...+..|...|- -.+++.|..... . ..++|++ . +..
T Consensus 3 ~~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~-----------------~----~~~~l~~---g--~~~ 56 (438)
T PRK04663 3 RWQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETP-----------------P----GQEQLPE---D--VEL 56 (438)
T ss_pred cccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCc-----------------h----hHHHhhc---C--CEE
Confidence 4556 789999999999999999999865 478888854210 0 0123422 3 333
Q ss_pred EecCCChhhccCCceEEEccc-CHHHHHHHHHHHHhcCCCceeEE
Q 001747 108 LTSKLTKEQLSDFQAVVFTDI-SLDKAIEFDDFCHNHQPAISFIK 151 (1018)
Q Consensus 108 ~~~~l~~~~~~~~dvVI~~~~-~~~~~~~ln~~c~~~~~~i~fi~ 151 (1018)
.....+++.+.++|+||.+.. +.. ...-..+++++ ||++.
T Consensus 57 ~~g~~~~~~~~~~d~vV~SpgI~~~--~p~~~~a~~~g--i~i~~ 97 (438)
T PRK04663 57 HSGGWNLEWLLEADLVVTNPGIALA--TPEIQQVLAAG--IPVVG 97 (438)
T ss_pred EeCCCChHHhccCCEEEECCCCCCC--CHHHHHHHHCC--CcEEE
Confidence 334345566788999988764 221 12334567788 88874
No 336
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=83.88 E-value=4.8 Score=45.55 Aligned_cols=33 Identities=18% Similarity=0.225 Sum_probs=29.7
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCC
Q 001747 33 ASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 66 (1018)
Q Consensus 33 ~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d 66 (1018)
..+|.|+|+|.+|+.+|++|..+|. .++++|.+
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~-~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGH-RVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 4589999999999999999999996 78999865
No 337
>PLN02780 ketoreductase/ oxidoreductase
Probab=83.78 E-value=3 Score=47.48 Aligned_cols=60 Identities=15% Similarity=0.235 Sum_probs=42.6
Q ss_pred cCcEEEEc-cCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCCeEE
Q 001747 430 DAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIE 508 (1018)
Q Consensus 430 ~~~v~vvG-~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~~i~ 508 (1018)
++.++|.| .||||.++++.|+..|. ++++++.+. .|.+.+++.+...++..++.
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G~------~Vil~~R~~-------------------~~l~~~~~~l~~~~~~~~~~ 107 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKGL------NLVLVARNP-------------------DKLKDVSDSIQSKYSKTQIK 107 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC------CEEEEECCH-------------------HHHHHHHHHHHHHCCCcEEE
Confidence 56789998 58999999999999998 788886431 24455666676666655655
Q ss_pred EEeccc
Q 001747 509 ALQNRV 514 (1018)
Q Consensus 509 ~~~~~~ 514 (1018)
.+...+
T Consensus 108 ~~~~Dl 113 (320)
T PLN02780 108 TVVVDF 113 (320)
T ss_pred EEEEEC
Confidence 554433
No 338
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=83.75 E-value=3 Score=46.79 Aligned_cols=33 Identities=30% Similarity=0.308 Sum_probs=30.1
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCc
Q 001747 34 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 67 (1018)
Q Consensus 34 s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~ 67 (1018)
.+|.|+|+|.+|+.+|..|+.+|. .++++|.+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence 589999999999999999999998 799999754
No 339
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=83.67 E-value=3.6 Score=44.69 Aligned_cols=33 Identities=18% Similarity=0.393 Sum_probs=27.7
Q ss_pred cCcEEEEc-cCcchHHHHHHHHhcCcccCCCccEEEecCC
Q 001747 430 DAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDD 468 (1018)
Q Consensus 430 ~~~v~vvG-~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D 468 (1018)
+++|+|.| .|+||.++++.|+..|. +++++|.+
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~------~vi~~~r~ 35 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGY------RVAVADIN 35 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC------EEEEEECC
Confidence 46789998 57999999999999997 78888744
No 340
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=83.66 E-value=2.4 Score=50.94 Aligned_cols=116 Identities=12% Similarity=0.129 Sum_probs=68.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCch--HHHHHHHHHHhh-CCCcEEEEEec
Q 001747 34 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKN--RALASVQKLQEL-NNAVVLSTLTS 110 (1018)
Q Consensus 34 s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~--ka~a~~~~L~el-Np~V~v~~~~~ 110 (1018)
++|.|||+|..|+.+|.||...|. +++++|.+.-....+... ...-|.+ .+....+.++.+ .|.+-+-....
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~-~V~v~dr~~~~~~~l~~~----~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~ 76 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGF-KISVYNRTYEKTEEFVKK----AKEGNTRVKGYHTLEELVNSLKKPRKVILLIKA 76 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHh----hhhcCCcceecCCHHHHHhcCCCCCEEEEEeCC
Confidence 579999999999999999999998 799998754332222110 0000100 112222333333 35543433221
Q ss_pred -CCCh-------hhccCCceEEEccc-CHHHHHHHHHHHHhcCCCceeEEeeecc
Q 001747 111 -KLTK-------EQLSDFQAVVFTDI-SLDKAIEFDDFCHNHQPAISFIKAEVRG 156 (1018)
Q Consensus 111 -~l~~-------~~~~~~dvVI~~~~-~~~~~~~ln~~c~~~~~~i~fi~~~~~G 156 (1018)
...+ ..+..=|+||++.. .+....+..+.+.++| +.|+.+.+.|
T Consensus 77 ~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~G--i~fldapVSG 129 (470)
T PTZ00142 77 GEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKG--ILYLGMGVSG 129 (470)
T ss_pred hHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcC--CeEEcCCCCC
Confidence 1111 13445578887765 4555556677888888 8899888777
No 341
>PRK06141 ornithine cyclodeaminase; Validated
Probab=83.65 E-value=2.4 Score=48.16 Aligned_cols=141 Identities=21% Similarity=0.253 Sum_probs=82.4
Q ss_pred cccCchhhhhhh-hhhhhHhhhhcC------Cccccce--eeeeecCCCCCCCCCCCCCCCCccCchhhhhhhcCHHHHH
Q 001747 356 AVLNPMAAMFGG-IVGQEVVKACSG------KFHPLYQ--FFYFDSVESLPTEPLDSTEFKPINSRYDAQISVFGAKLQK 426 (1018)
Q Consensus 356 ~el~pvaA~iGG-iaAQEVIK~iT~------kf~Pi~n--~~~fD~~e~l~~~~~~~~~~~~~~~rydrq~~~~G~~~q~ 426 (1018)
+.+..|.+.+++ ++ .+|.++. +..|-.+ .++||.-++.|..-++...+.. -|-.. ..-.+.+...
T Consensus 48 ~~~~~mp~~~~~~~~---g~K~~~~~p~N~~~glp~~~g~v~l~d~~tG~p~ai~d~~~lT~--~RTaa-~sala~~~La 121 (314)
T PRK06141 48 ATLLLMPAWNEGRYI---GVKAVTVFPGNPARGLPGLHSTYLLFDGRTGEPLALVDGTELTA--RRTAA-ASALAASYLA 121 (314)
T ss_pred ceEEEeeeecCCCee---EEEEEeecCCCCcCCCCceEEEEEEEECCCCCEEEEEcCcchhc--chhHH-HHHHHHHHhC
Confidence 455666666643 23 3887764 2334433 6778888887753333222211 11100 0112333334
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHh-cCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCC
Q 001747 427 KLEDAKVFIVGSGALGCEFLKNVAL-MGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRL 505 (1018)
Q Consensus 427 ~l~~~~v~vvG~GgiG~e~lk~La~-~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~ 505 (1018)
+...++|+|+|+|+.|..+++.+.+ .|+ .+|+|++.+ ..|++.+++.+.+.. .
T Consensus 122 ~~~~~~v~iiG~G~~a~~~~~al~~~~~~-----~~V~V~~Rs-------------------~~~a~~~a~~~~~~g--~ 175 (314)
T PRK06141 122 RKDASRLLVVGTGRLASLLALAHASVRPI-----KQVRVWGRD-------------------PAKAEALAAELRAQG--F 175 (314)
T ss_pred CCCCceEEEECCcHHHHHHHHHHHhcCCC-----CEEEEEcCC-------------------HHHHHHHHHHHHhcC--C
Confidence 4467899999999999999997775 576 788887432 457777777776532 2
Q ss_pred eEEEEecccCCccccccccccccCccEEEEccc
Q 001747 506 NIEALQNRVGPETENVFDDTFWENITCVINALD 538 (1018)
Q Consensus 506 ~i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alD 538 (1018)
.+.... +. .+...++|+|++|+.
T Consensus 176 ~~~~~~-----~~-----~~av~~aDIVi~aT~ 198 (314)
T PRK06141 176 DAEVVT-----DL-----EAAVRQADIISCATL 198 (314)
T ss_pred ceEEeC-----CH-----HHHHhcCCEEEEeeC
Confidence 233221 11 234578999999986
No 342
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=83.61 E-value=1.3 Score=44.66 Aligned_cols=61 Identities=15% Similarity=0.211 Sum_probs=41.7
Q ss_pred CcEEEEc-cCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCCeEEE
Q 001747 431 AKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEA 509 (1018)
Q Consensus 431 ~~v~vvG-~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~~i~~ 509 (1018)
+.++|+| +||||-++++.|+..|. .++.+++.+ .-..+.+.+++.+...+ .++..
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~-----~~v~~~~r~-----------------~~~~~~~~l~~~l~~~~--~~~~~ 56 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGA-----RVVILTSRS-----------------EDSEGAQELIQELKAPG--AKITF 56 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTT-----EEEEEEESS-----------------CHHHHHHHHHHHHHHTT--SEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCc-----eEEEEeeec-----------------ccccccccccccccccc--ccccc
Confidence 3678887 89999999999999987 688877654 11234444455555333 56777
Q ss_pred EecccC
Q 001747 510 LQNRVG 515 (1018)
Q Consensus 510 ~~~~~~ 515 (1018)
+...+.
T Consensus 57 ~~~D~~ 62 (167)
T PF00106_consen 57 IECDLS 62 (167)
T ss_dssp EESETT
T ss_pred cccccc
Confidence 665554
No 343
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=83.56 E-value=1.9 Score=46.89 Aligned_cols=36 Identities=17% Similarity=0.315 Sum_probs=31.0
Q ss_pred HhcCcEEEEc-cCcchHHHHHHHHhcCcccCCCccEEEecCCc
Q 001747 428 LEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDV 469 (1018)
Q Consensus 428 l~~~~v~vvG-~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~ 469 (1018)
+.+++++|.| .|+||.++++.|+..|. +++++|.+.
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G~------~v~~~~r~~ 40 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEGA------RVVIADIKP 40 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC------EEEEEcCCH
Confidence 5678899998 59999999999999998 788887654
No 344
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=83.56 E-value=3.1 Score=46.80 Aligned_cols=36 Identities=28% Similarity=0.384 Sum_probs=31.5
Q ss_pred hcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCc
Q 001747 429 EDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 469 (1018)
Q Consensus 429 ~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~ 469 (1018)
..++|+|.|||.||--....+-.+|. .+|+++|...
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA-----~~VVi~d~~~ 204 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGA-----SDVVITDLVA 204 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCC-----CcEEEeecCH
Confidence 45789999999999999999899999 8999997543
No 345
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=83.55 E-value=5.3 Score=40.48 Aligned_cols=104 Identities=17% Similarity=0.228 Sum_probs=54.2
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEecCCCh
Q 001747 35 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLTK 114 (1018)
Q Consensus 35 ~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~~~l~~ 114 (1018)
+|.|+|+|..|+.+|.-|+..| .+++|+..+.-....+..+-.-.. ... . ..+.+.+. +. .++ +
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g-~~V~l~~~~~~~~~~i~~~~~n~~-~~~---------~-~~l~~~i~--~t-~dl-~ 64 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG-HEVTLWGRDEEQIEEINETRQNPK-YLP---------G-IKLPENIK--AT-TDL-E 64 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT-EEEEEETSCHHHHHHHHHHTSETT-TST---------T-SBEETTEE--EE-SSH-H
T ss_pred CEEEECcCHHHHHHHHHHHHcC-CEEEEEeccHHHHHHHHHhCCCCC-CCC---------C-cccCcccc--cc-cCH-H
Confidence 6999999999999999999999 689998765411111111000000 000 0 01111121 11 111 2
Q ss_pred hhccCCceEEEcccCHHHHHHHHHHHH--hcCCCceeEEeeecce
Q 001747 115 EQLSDFQAVVFTDISLDKAIEFDDFCH--NHQPAISFIKAEVRGL 157 (1018)
Q Consensus 115 ~~~~~~dvVI~~~~~~~~~~~ln~~c~--~~~~~i~fi~~~~~G~ 157 (1018)
+.+++.|+||++..+...+..+.++.. +.+ .++| .-+.|+
T Consensus 65 ~a~~~ad~IiiavPs~~~~~~~~~l~~~l~~~--~~ii-~~~KG~ 106 (157)
T PF01210_consen 65 EALEDADIIIIAVPSQAHREVLEQLAPYLKKG--QIII-SATKGF 106 (157)
T ss_dssp HHHTT-SEEEE-S-GGGHHHHHHHHTTTSHTT---EEE-ETS-SE
T ss_pred HHhCcccEEEecccHHHHHHHHHHHhhccCCC--CEEE-EecCCc
Confidence 467889999999877665555555443 233 3444 344555
No 346
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=83.54 E-value=5.6 Score=45.38 Aligned_cols=32 Identities=25% Similarity=0.272 Sum_probs=28.5
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCC
Q 001747 34 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 66 (1018)
Q Consensus 34 s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d 66 (1018)
.+|.|+|+|.+|+.++.+|+.+|. .++++|.+
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~-~V~~~~r~ 36 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGV-PVRLWARR 36 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 379999999999999999999996 68888864
No 347
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.51 E-value=3.6 Score=48.98 Aligned_cols=94 Identities=21% Similarity=0.167 Sum_probs=57.8
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEec
Q 001747 31 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 110 (1018)
Q Consensus 31 L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~~ 110 (1018)
+++++|+|+|.|++|..+|+.|...|. ++++.|.+.-.. ....+.|.+.. +.+. ..
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~-~V~~~d~~~~~~-------------------~~~~~~l~~~g--~~~~--~~ 58 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKLGA-NVTVNDGKPFSE-------------------NPEAQELLEEG--IKVI--CG 58 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCCCccc-------------------hhHHHHHHhcC--CEEE--eC
Confidence 467899999999999999999999997 788888543110 11223444432 2332 22
Q ss_pred CCChhhccC-CceEEEcccCHHHHHHHHHHHHhcCCCceeEE
Q 001747 111 KLTKEQLSD-FQAVVFTDISLDKAIEFDDFCHNHQPAISFIK 151 (1018)
Q Consensus 111 ~l~~~~~~~-~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~ 151 (1018)
....+.+.. +|+||.+..=.. ...+-+.+++++ +|++.
T Consensus 59 ~~~~~~~~~~~d~vV~s~gi~~-~~~~~~~a~~~~--i~v~~ 97 (447)
T PRK02472 59 SHPLELLDEDFDLMVKNPGIPY-TNPMVEKALEKG--IPIIT 97 (447)
T ss_pred CCCHHHhcCcCCEEEECCCCCC-CCHHHHHHHHCC--CcEEe
Confidence 222223344 899888763111 123455667888 88874
No 348
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=83.50 E-value=0.98 Score=53.47 Aligned_cols=36 Identities=31% Similarity=0.577 Sum_probs=32.7
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecC
Q 001747 427 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 467 (1018)
Q Consensus 427 ~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~ 467 (1018)
.+.+.+|+|+|+|.+|..+++.|...|+ .+++++|.
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~-----~~V~v~~r 212 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGV-----GKILIANR 212 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCC-----CEEEEEeC
Confidence 4778999999999999999999999998 78998865
No 349
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=83.49 E-value=3.1 Score=47.23 Aligned_cols=23 Identities=35% Similarity=0.613 Sum_probs=22.0
Q ss_pred CcEEEEccCcchHHHHHHHHhcC
Q 001747 431 AKVFIVGSGALGCEFLKNVALMG 453 (1018)
Q Consensus 431 ~~v~vvG~GgiG~e~lk~La~~G 453 (1018)
.||+|+|+||+||-++-.|++.|
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g 23 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG 23 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC
Confidence 48999999999999999999999
No 350
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=83.23 E-value=3 Score=50.06 Aligned_cols=116 Identities=14% Similarity=0.107 Sum_probs=67.8
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhh-CCCcEEEEEec-CC
Q 001747 35 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQEL-NNAVVLSTLTS-KL 112 (1018)
Q Consensus 35 ~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~el-Np~V~v~~~~~-~l 112 (1018)
.|.|||+|..|..+|.||+..|. +++++|.+.-....+...+--. -+-.-+....+..+.+ .|++-+-.... ..
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~-~V~v~drt~~~~~~l~~~~~~g---~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~ 76 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGF-TVSVYNRTPEKTDEFLAEHAKG---KKIVGAYSIEEFVQSLERPRKIMLMVKAGAP 76 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHhhccCC---CCceecCCHHHHHhhcCCCCEEEEECCCcHH
Confidence 48899999999999999999998 7999987554333332110000 0000111122222233 35544444333 11
Q ss_pred Ch-------hhccCCceEEEccc-CHHHHHHHHHHHHhcCCCceeEEeeecc
Q 001747 113 TK-------EQLSDFQAVVFTDI-SLDKAIEFDDFCHNHQPAISFIKAEVRG 156 (1018)
Q Consensus 113 ~~-------~~~~~~dvVI~~~~-~~~~~~~ln~~c~~~~~~i~fi~~~~~G 156 (1018)
.+ ..+..=++||++.. .+....+..+.+.+.+ +.||.+.+.|
T Consensus 77 v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~g--i~fvdapVsG 126 (467)
T TIGR00873 77 VDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKG--ILFVGSGVSG 126 (467)
T ss_pred HHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcC--CEEEcCCCCC
Confidence 11 13444578887764 4455555566788888 8898888777
No 351
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=83.16 E-value=7.9 Score=43.09 Aligned_cols=80 Identities=9% Similarity=0.099 Sum_probs=50.0
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhcC---CEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEe
Q 001747 33 ASNILVSGMQGLGAEIAKNLILAGV---KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 109 (1018)
Q Consensus 33 ~s~VlIiG~gglG~eiaKnLvlaGV---g~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~ 109 (1018)
+.+|.+||+|-+|..++++|...|. ..++++|.+. .++ +.+.+.. .+. +..
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~-------------------~~~----~~l~~~~-g~~--~~~ 55 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNV-------------------SNL----KNASDKY-GIT--ITT 55 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCH-------------------HHH----HHHHHhc-CcE--EeC
Confidence 4589999999999999999999985 3466655311 122 2233211 132 221
Q ss_pred cCCChhhccCCceEEEcccCHHHHHHHHHHH
Q 001747 110 SKLTKEQLSDFQAVVFTDISLDKAIEFDDFC 140 (1018)
Q Consensus 110 ~~l~~~~~~~~dvVI~~~~~~~~~~~ln~~c 140 (1018)
+ ..+.+.+.|+||+|..+......+.++.
T Consensus 56 -~-~~e~~~~aDiIiLavkP~~~~~vl~~l~ 84 (272)
T PRK12491 56 -N-NNEVANSADILILSIKPDLYSSVINQIK 84 (272)
T ss_pred -C-cHHHHhhCCEEEEEeChHHHHHHHHHHH
Confidence 1 2345678899999987755554555543
No 352
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=83.15 E-value=1.3 Score=56.16 Aligned_cols=163 Identities=15% Similarity=0.127 Sum_probs=87.3
Q ss_pred CcEEEEccCcchHHHHHHHH-hcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhC---CC--
Q 001747 431 AKVFIVGSGALGCEFLKNVA-LMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSIN---PR-- 504 (1018)
Q Consensus 431 ~~v~vvG~GgiG~e~lk~La-~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~n---p~-- 504 (1018)
++|.|||+|-.|+.++-.++ +.|+ .++++|.+.= .|.| ++..+.-..+.+.+.. +.
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~------~V~l~d~~~~---~l~~---------~~~~~~~~l~~~~~~~~~~~~~~ 371 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGL------PVRIKDINPQ---GINH---------ALKYSWDLLDKKVKRRHLKPSER 371 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCC------eEEEEeCCHH---HHHH---------HHHHHHHHHHHHHHcCCCCHHHH
Confidence 57999999999999999999 8898 9999987532 1111 1111111111111100 00
Q ss_pred ----CeEEEEecccCCccccccccccccCccEEEEccc-ChhHHHHHHhhcccccc--ceEecccCCcccc-eEEEeCcc
Q 001747 505 ----LNIEALQNRVGPETENVFDDTFWENITCVINALD-NVNARLYVDQRCLYFQK--PLLESGTLGAKCN-TQMVIPHL 576 (1018)
Q Consensus 505 ----~~i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alD-n~~ar~~v~~~c~~~~~--pli~~g~~g~~g~-~~v~ip~~ 576 (1018)
-+|+... + + +-++++|+||.|+- +.+.++.+-...-..-. .++-+-|.+.--. ..-.+++-
T Consensus 372 ~~~~~~i~~~~--------~-~--~~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p 440 (708)
T PRK11154 372 DKQMALISGTT--------D-Y--RGFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARP 440 (708)
T ss_pred HHHHhcEEEeC--------C-h--HHhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcc
Confidence 0122211 0 1 22578999999964 55666554444433322 3554554443211 00001111
Q ss_pred cccccCCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhccChh
Q 001747 577 TENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPA 623 (1018)
Q Consensus 577 t~~y~~~~~~~~~~~p~Ct~~~~P~~~~h~i~wAk~~f~~~F~~~~~ 623 (1018)
..+.+.+--.|....|++-+-.-|.....++.++..++.. .+..|.
T Consensus 441 ~r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~~-~gk~pv 486 (708)
T PRK11154 441 EQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTVALAKK-QGKTPI 486 (708)
T ss_pred cceEEEecCCccccCceEEEECCCCCCHHHHHHHHHHHHH-cCCceE
Confidence 1222222222333457777777888889999999998765 355443
No 353
>PRK06057 short chain dehydrogenase; Provisional
Probab=83.13 E-value=1.6 Score=47.44 Aligned_cols=37 Identities=22% Similarity=0.357 Sum_probs=31.7
Q ss_pred HHhcCcEEEEcc-CcchHHHHHHHHhcCcccCCCccEEEecCCc
Q 001747 427 KLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDV 469 (1018)
Q Consensus 427 ~l~~~~v~vvG~-GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~ 469 (1018)
++.+++|+|+|+ |+||.++++.|+..|. +++++|.+.
T Consensus 4 ~~~~~~vlItGasggIG~~~a~~l~~~G~------~v~~~~r~~ 41 (255)
T PRK06057 4 RLAGRVAVITGGGSGIGLATARRLAAEGA------TVVVGDIDP 41 (255)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHcCC------EEEEEeCCH
Confidence 367889999996 9999999999999997 788887543
No 354
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=83.12 E-value=4.3 Score=46.91 Aligned_cols=97 Identities=15% Similarity=0.131 Sum_probs=58.4
Q ss_pred cEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCCeEEEEe
Q 001747 432 KVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQ 511 (1018)
Q Consensus 432 ~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~~i~~~~ 511 (1018)
+|+|+|+|.||.-.+..+.++|. ..|+++|.+.- |-+.|++.. . ..+....
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga-----~~Viv~d~~~~-------------------Rl~~A~~~~----g-~~~~~~~ 221 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGA-----SVVIVVDRSPE-------------------RLELAKEAG----G-ADVVVNP 221 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCC-----ceEEEeCCCHH-------------------HHHHHHHhC----C-CeEeecC
Confidence 89999999999999999999999 89999976432 323333211 1 0100000
Q ss_pred cccCCccccccccccccCccEEEEcccChhHHHHHHhhccccccceE
Q 001747 512 NRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLL 558 (1018)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~~~pli 558 (1018)
.. ....+.++...--..+|+||+|+.+..+.....+.++..+.-.+
T Consensus 222 ~~-~~~~~~~~~~t~g~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~ 267 (350)
T COG1063 222 SE-DDAGAEILELTGGRGADVVIEAVGSPPALDQALEALRPGGTVVV 267 (350)
T ss_pred cc-ccHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence 00 00000010000013699999999988877777777766665444
No 355
>PRK07062 short chain dehydrogenase; Provisional
Probab=83.12 E-value=6.1 Score=43.11 Aligned_cols=59 Identities=24% Similarity=0.284 Sum_probs=41.4
Q ss_pred hhcCeEEEEcC-ChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEe
Q 001747 31 LFASNILVSGM-QGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 109 (1018)
Q Consensus 31 L~~s~VlIiG~-gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~ 109 (1018)
|+++.++|.|+ +|+|.++++.|+..|. ++.+++.+. .+.+.+.+.+.+..|..++....
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~ 65 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDE-------------------ERLASAEARLREKFPGARLLAAR 65 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCH-------------------HHHHHHHHHHHhhCCCceEEEEE
Confidence 66788999986 6899999999999998 577776431 24445556666665555555443
No 356
>PRK05442 malate dehydrogenase; Provisional
Probab=83.11 E-value=1.7 Score=49.70 Aligned_cols=32 Identities=13% Similarity=0.201 Sum_probs=28.8
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHhcC-C-----EEEEEeC
Q 001747 34 SNILVSGM-QGLGAEIAKNLILAGV-K-----SVTLHDE 65 (1018)
Q Consensus 34 s~VlIiG~-gglG~eiaKnLvlaGV-g-----~itlvD~ 65 (1018)
.||.|+|+ |.+|+.+|-.|+..|+ + ++.|+|-
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi 43 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEI 43 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEec
Confidence 58999998 9999999999999887 4 6999985
No 357
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=83.01 E-value=2.2 Score=49.71 Aligned_cols=35 Identities=23% Similarity=0.221 Sum_probs=31.9
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCC
Q 001747 31 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 66 (1018)
Q Consensus 31 L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d 66 (1018)
+...+|+|+|+|++|..+++.+...|+ +++++|.+
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~ 199 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDIN 199 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECC
Confidence 567889999999999999999999999 69999864
No 358
>PRK08291 ectoine utilization protein EutC; Validated
Probab=82.99 E-value=3.2 Score=47.60 Aligned_cols=145 Identities=14% Similarity=0.172 Sum_probs=80.9
Q ss_pred ccccCchhhhhhhhhhhhHhhhhcCC------ccccc--eeeeeecCCCCCCCC-CCCCCCCCccCchhhhhhhcCHHHH
Q 001747 355 RAVLNPMAAMFGGIVGQEVVKACSGK------FHPLY--QFFYFDSVESLPTEP-LDSTEFKPINSRYDAQISVFGAKLQ 425 (1018)
Q Consensus 355 ~~el~pvaA~iGGiaAQEVIK~iT~k------f~Pi~--n~~~fD~~e~l~~~~-~~~~~~~~~~~rydrq~~~~G~~~q 425 (1018)
++.++.+.++++|.-. -.+|.++.- -.|-. -.++||.-.+.|..- .+...+ .+-|-+.- ...+....
T Consensus 52 ~~~~~~mp~~~~~~~~-~g~K~~~~~~~N~~~glp~~~g~i~l~d~~tG~~~ai~~d~~~l--t~~rT~a~-~~~a~~~l 127 (330)
T PRK08291 52 RGEVDVKTAYIPGLDS-FAIKVSPGFFDNPKLGLPSLNGLMVVLSARTGLVEALLLDNGYL--TDVRTAAA-GAVAARHL 127 (330)
T ss_pred CCcEEEeecccCCCCe-eEEEeccCCCCccccCCCcceEEEEEEeCCCCceEEEEcCCchH--HHHHHHHH-HHHHHHHh
Confidence 3467778888877311 338887652 23332 366777766655422 111111 11111111 11122211
Q ss_pred HHHhcCcEEEEccCcchHHHHHHHHh-cCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCC
Q 001747 426 KKLEDAKVFIVGSGALGCEFLKNVAL-MGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPR 504 (1018)
Q Consensus 426 ~~l~~~~v~vvG~GgiG~e~lk~La~-~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~ 504 (1018)
.+-..++++|+|+|+.|...+..|+. .|+ ..++|++.+ ..|++.+++.+.+.. .
T Consensus 128 a~~~~~~v~IiGaG~~a~~~~~al~~~~~~-----~~V~v~~R~-------------------~~~a~~l~~~~~~~~-g 182 (330)
T PRK08291 128 AREDASRAAVIGAGEQARLQLEALTLVRPI-----REVRVWARD-------------------AAKAEAYAADLRAEL-G 182 (330)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHhcCCC-----CEEEEEcCC-------------------HHHHHHHHHHHhhcc-C
Confidence 22234689999999999999999985 577 788887432 336777777765433 2
Q ss_pred CeEEEEecccCCccccccccccccCccEEEEccc
Q 001747 505 LNIEALQNRVGPETENVFDDTFWENITCVINALD 538 (1018)
Q Consensus 505 ~~i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alD 538 (1018)
+.+..+. +. .+.+.++|+|++|+-
T Consensus 183 ~~v~~~~-----d~-----~~al~~aDiVi~aT~ 206 (330)
T PRK08291 183 IPVTVAR-----DV-----HEAVAGADIIVTTTP 206 (330)
T ss_pred ceEEEeC-----CH-----HHHHccCCEEEEeeC
Confidence 3433321 11 234567899999974
No 359
>PRK08291 ectoine utilization protein EutC; Validated
Probab=82.95 E-value=4.1 Score=46.66 Aligned_cols=75 Identities=19% Similarity=0.166 Sum_probs=53.5
Q ss_pred cCeEEEEcCChHHHHHHHHHHH-hcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEecC
Q 001747 33 ASNILVSGMQGLGAEIAKNLIL-AGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 111 (1018)
Q Consensus 33 ~s~VlIiG~gglG~eiaKnLvl-aGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~~~ 111 (1018)
.++|+|+|+|+.|..++..+.. .|+..+++++.+ ..|+++.++++++.. .+++.... +
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~-------------------~~~a~~l~~~~~~~~-g~~v~~~~-d 190 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARD-------------------AAKAEAYAADLRAEL-GIPVTVAR-D 190 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCC-------------------HHHHHHHHHHHhhcc-CceEEEeC-C
Confidence 4689999999999999999985 679999998642 237777777776432 24443332 1
Q ss_pred CChhhccCCceEEEcccC
Q 001747 112 LTKEQLSDFQAVVFTDIS 129 (1018)
Q Consensus 112 l~~~~~~~~dvVI~~~~~ 129 (1018)
+ ++.+.++|+||.++.+
T Consensus 191 ~-~~al~~aDiVi~aT~s 207 (330)
T PRK08291 191 V-HEAVAGADIIVTTTPS 207 (330)
T ss_pred H-HHHHccCCEEEEeeCC
Confidence 1 3457789999988754
No 360
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.87 E-value=8.6 Score=43.04 Aligned_cols=32 Identities=34% Similarity=0.461 Sum_probs=29.2
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCC
Q 001747 34 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 66 (1018)
Q Consensus 34 s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d 66 (1018)
.+|.|+|+|.+|+.+|..|+.+|. .++++|.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~ 35 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDIS 35 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCC
Confidence 589999999999999999999997 79999864
No 361
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=82.86 E-value=7.7 Score=37.43 Aligned_cols=93 Identities=19% Similarity=0.121 Sum_probs=52.8
Q ss_pred eEEEEc-CChHHHHHHHHHHHh-cCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEecCC
Q 001747 35 NILVSG-MQGLGAEIAKNLILA-GVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKL 112 (1018)
Q Consensus 35 ~VlIiG-~gglG~eiaKnLvla-GVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~~~l 112 (1018)
||.|+| .|-+|.++++.|... .+.-+.++.... ..|+.-..... .+...-.+.... .
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~---------------~~g~~~~~~~~----~~~~~~~~~~~~--~ 59 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSR---------------SAGKPLSEVFP----HPKGFEDLSVED--A 59 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT---------------TTTSBHHHTTG----GGTTTEEEBEEE--T
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc---------------ccCCeeehhcc----ccccccceeEee--c
Confidence 799999 888999999888862 233333333322 24443222111 112233333333 4
Q ss_pred ChhhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEE
Q 001747 113 TKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIK 151 (1018)
Q Consensus 113 ~~~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~ 151 (1018)
+.+.+.+.|+|++|..+... ..+...+.+.| +++|.
T Consensus 60 ~~~~~~~~Dvvf~a~~~~~~-~~~~~~~~~~g--~~ViD 95 (121)
T PF01118_consen 60 DPEELSDVDVVFLALPHGAS-KELAPKLLKAG--IKVID 95 (121)
T ss_dssp SGHHHTTESEEEE-SCHHHH-HHHHHHHHHTT--SEEEE
T ss_pred chhHhhcCCEEEecCchhHH-HHHHHHHhhCC--cEEEe
Confidence 55667899999999865444 44455557777 66663
No 362
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=82.75 E-value=7.6 Score=47.55 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=26.9
Q ss_pred hhcCeEEEEcC-ChHHHHHHHHHHHhcCCEEEEEeC
Q 001747 31 LFASNILVSGM-QGLGAEIAKNLILAGVKSVTLHDE 65 (1018)
Q Consensus 31 L~~s~VlIiG~-gglG~eiaKnLvlaGVg~itlvD~ 65 (1018)
..+..|+|.|+ |++|..+++.|+..|. ++++++.
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~R 112 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVR 112 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeC
Confidence 35667889985 8999999999999997 5665543
No 363
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.71 E-value=4.2 Score=49.30 Aligned_cols=94 Identities=14% Similarity=0.100 Sum_probs=59.5
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEec
Q 001747 31 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 110 (1018)
Q Consensus 31 L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~~ 110 (1018)
+.+++|+|+|+|+.|..+|+-|...|. +++..|..... + ..+.|.+.-+.+.+. ..
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~~~~-----------------~----~~~~L~~~~~~~~~~--~g 60 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGA-RLRVADTREAP-----------------P----NLAALRAELPDAEFV--GG 60 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCC-EEEEEcCCCCc-----------------h----hHHHHHhhcCCcEEE--eC
Confidence 457799999999999999999999997 78888854310 0 011243332333333 33
Q ss_pred CCChhhccCCceEEEccc-CHH--HHHHHHHHHHhcCCCceeE
Q 001747 111 KLTKEQLSDFQAVVFTDI-SLD--KAIEFDDFCHNHQPAISFI 150 (1018)
Q Consensus 111 ~l~~~~~~~~dvVI~~~~-~~~--~~~~ln~~c~~~~~~i~fi 150 (1018)
...++.+.++|+||.+.. +.. ....+-..+++.+ +|++
T Consensus 61 ~~~~~~~~~~d~vv~sp~I~~~~~~~~~~~~~a~~~~--i~v~ 101 (498)
T PRK02006 61 PFDPALLDGVDLVALSPGLSPLEAALAPLVAAARERG--IPVW 101 (498)
T ss_pred CCchhHhcCCCEEEECCCCCCcccccCHHHHHHHHCC--CcEE
Confidence 344566778999998754 221 0112334457778 8888
No 364
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=82.62 E-value=2.9 Score=49.44 Aligned_cols=111 Identities=17% Similarity=0.133 Sum_probs=68.5
Q ss_pred CcEEEEccCcchH-HHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCCeEEE
Q 001747 431 AKVFIVGSGALGC-EFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEA 509 (1018)
Q Consensus 431 ~~v~vvG~GgiG~-e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~~i~~ 509 (1018)
.||.|||+|+.-. ++++.|++..-. -+.++|+++|-|. ...|++- ...+.+.+.+.++.++|+.
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~-l~~~ei~L~Did~--~~rl~~v------------~~~~~~~~~~~~~~~~v~~ 65 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEE-LPVTELVLVDIDE--EEKLEIV------------GALAKRMVKKAGLPIKVHL 65 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhcccc-CCCCEEEEecCCh--HHHHHHH------------HHHHHHHHHhhCCCeEEEE
Confidence 3799999999865 677777763110 0128999999885 3333221 2345555667777787777
Q ss_pred EecccCCccccccccccccCccEEEEccc--ChhHHHHHHhhccccccceEecccCCcccc
Q 001747 510 LQNRVGPETENVFDDTFWENITCVINALD--NVNARLYVDQRCLYFQKPLLESGTLGAKCN 568 (1018)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~dvVi~alD--n~~ar~~v~~~c~~~~~pli~~g~~g~~g~ 568 (1018)
.... .+-+++.|+||+++- ..++|..-.+....+|+-- .-|.|..|-
T Consensus 66 t~d~----------~~al~gadfVi~~~~vg~~~~r~~de~i~~~~Gi~g--qET~G~GG~ 114 (419)
T cd05296 66 TTDR----------REALEGADFVFTQIRVGGLEARALDERIPLKHGVIG--QETTGAGGF 114 (419)
T ss_pred eCCH----------HHHhCCCCEEEEEEeeCCcchhhhhhhhHHHcCCcc--ccCCCcchH
Confidence 5432 345688999999874 3345555555555555432 456666664
No 365
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=82.62 E-value=5.7 Score=43.82 Aligned_cols=74 Identities=9% Similarity=0.080 Sum_probs=48.0
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhcC---CEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEE
Q 001747 32 FASNILVSGMQGLGAEIAKNLILAGV---KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTL 108 (1018)
Q Consensus 32 ~~s~VlIiG~gglG~eiaKnLvlaGV---g~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~ 108 (1018)
++.+|.|||+|-+|+.+++.|..+|+ .++.++|.+.-. .+ +...
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~--------------~~-------------------~~~~ 48 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKN--------------TP-------------------FVYL 48 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhc--------------CC-------------------eEEe
Confidence 45689999999999999999999884 236666542210 00 1111
Q ss_pred ecCCChhhccCCceEEEcccCHHHHHHHHHHH
Q 001747 109 TSKLTKEQLSDFQAVVFTDISLDKAIEFDDFC 140 (1018)
Q Consensus 109 ~~~l~~~~~~~~dvVI~~~~~~~~~~~ln~~c 140 (1018)
. + +.+.+.++|+||+|..+......+.++.
T Consensus 49 ~-~-~~~~~~~~D~Vilavkp~~~~~vl~~i~ 78 (260)
T PTZ00431 49 Q-S-NEELAKTCDIIVLAVKPDLAGKVLLEIK 78 (260)
T ss_pred C-C-hHHHHHhCCEEEEEeCHHHHHHHHHHHH
Confidence 1 1 2234668899999987766655555543
No 366
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=82.60 E-value=1.2 Score=50.79 Aligned_cols=36 Identities=22% Similarity=0.408 Sum_probs=31.3
Q ss_pred HhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCC
Q 001747 428 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 468 (1018)
Q Consensus 428 l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D 468 (1018)
+...||.|||+|.+|+.++-.++..|+ ..|+++|-+
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl-----~~i~LvDi~ 39 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNL-----GDVVLFDIV 39 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-----CeEEEEeCC
Confidence 445799999999999999999999998 469999853
No 367
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=82.58 E-value=4 Score=48.65 Aligned_cols=33 Identities=15% Similarity=0.399 Sum_probs=28.5
Q ss_pred cCcEEEEc-cCcchHHHHHHHHhcCcccCCCccEEEecCC
Q 001747 430 DAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDD 468 (1018)
Q Consensus 430 ~~~v~vvG-~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D 468 (1018)
.+||+|.| +|-||+.+++.|...|. +++++|.+
T Consensus 120 ~mkILVTGatGFIGs~Lv~~Ll~~G~------~V~~ldr~ 153 (436)
T PLN02166 120 RLRIVVTGGAGFVGSHLVDKLIGRGD------EVIVIDNF 153 (436)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCC------EEEEEeCC
Confidence 45899998 69999999999999997 78888754
No 368
>PLN02427 UDP-apiose/xylose synthase
Probab=82.57 E-value=2.6 Score=49.10 Aligned_cols=35 Identities=14% Similarity=0.300 Sum_probs=29.0
Q ss_pred HHhcCcEEEEc-cCcchHHHHHHHHhcC-cccCCCccEEEecC
Q 001747 427 KLEDAKVFIVG-SGALGCEFLKNVALMG-VSCGNQGKLTITDD 467 (1018)
Q Consensus 427 ~l~~~~v~vvG-~GgiG~e~lk~La~~G-v~~~~~g~i~ivD~ 467 (1018)
++..+||+|.| +|-||+.+++.|+..| . +++.+|.
T Consensus 11 ~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~------~V~~l~r 47 (386)
T PLN02427 11 PIKPLTICMIGAGGFIGSHLCEKLMTETPH------KVLALDV 47 (386)
T ss_pred cccCcEEEEECCcchHHHHHHHHHHhcCCC------EEEEEec
Confidence 45667899999 5999999999999985 4 6777774
No 369
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=82.56 E-value=1.4 Score=55.77 Aligned_cols=170 Identities=17% Similarity=0.171 Sum_probs=83.4
Q ss_pred CcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccc----cCcccCcccccccchHHHHHHHHHHhhCCCCe
Q 001747 431 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSN----LSRQFLFRDWNIGQAKSTVAASAATSINPRLN 506 (1018)
Q Consensus 431 ~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sN----LnRqflf~~~diG~~Ka~va~~~l~~~np~~~ 506 (1018)
++|.|||+|..|+.++..+++.|. .++++|.+.=.... +.+. |-+.-.-|+-..+.+.+.+.+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~------~V~l~d~~~~~l~~~~~~~~~~-l~~~~~~g~~~~~~~~~~~~~------ 380 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV------PVIMKDINQKALDLGMTEAAKL-LNKQVERGKIDGAKMAGVLSS------ 380 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC------eEEEEeCCHHHHHHHHHHHHHH-HHHHHHcCCCChhhHHHHHhC------
Confidence 579999999999999999999998 99999976322111 0000 000001111111111222211
Q ss_pred EEEEecccCCccccccccccccCccEEEEccc-ChhHHHHHHhhcccccc--ceEecccCCcccc-eEEEeCcccccccC
Q 001747 507 IEALQNRVGPETENVFDDTFWENITCVINALD-NVNARLYVDQRCLYFQK--PLLESGTLGAKCN-TQMVIPHLTENYGA 582 (1018)
Q Consensus 507 i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alD-n~~ar~~v~~~c~~~~~--pli~~g~~g~~g~-~~v~ip~~t~~y~~ 582 (1018)
|+... + + +-++++|+||.|+- +.+.++.+-...-..-. .++-+-|.+.-=. ..-.+++-..+.+.
T Consensus 381 i~~~~--------~-~--~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~ 449 (715)
T PRK11730 381 IRPTL--------D-Y--AGFERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGM 449 (715)
T ss_pred eEEeC--------C-H--HHhcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEE
Confidence 21110 1 1 22578999999964 55555543333322221 3444444433110 00001111112221
Q ss_pred CCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhccChhhh
Q 001747 583 SRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEV 625 (1018)
Q Consensus 583 ~~~~~~~~~p~Ct~~~~P~~~~h~i~wAk~~f~~~F~~~~~~~ 625 (1018)
+--.|....|+.-+-.-|...+.+++++.+++.. .+..|-.+
T Consensus 450 Hff~P~~~~~lVEvv~g~~T~~~~~~~~~~~~~~-lgk~pv~v 491 (715)
T PRK11730 450 HFFNPVHRMPLVEVIRGEKTSDETIATVVAYASK-MGKTPIVV 491 (715)
T ss_pred ecCCcccccceEEeeCCCCCCHHHHHHHHHHHHH-hCCceEEe
Confidence 1111222335555555677778888888887654 36555444
No 370
>PRK05866 short chain dehydrogenase; Provisional
Probab=82.43 E-value=2.5 Score=47.33 Aligned_cols=34 Identities=15% Similarity=0.329 Sum_probs=29.0
Q ss_pred HhcCcEEEEcc-CcchHHHHHHHHhcCcccCCCccEEEecC
Q 001747 428 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 467 (1018)
Q Consensus 428 l~~~~v~vvG~-GgiG~e~lk~La~~Gv~~~~~g~i~ivD~ 467 (1018)
+.+++++|.|+ ||||.++++.|+..|. ++++++.
T Consensus 38 ~~~k~vlItGasggIG~~la~~La~~G~------~Vi~~~R 72 (293)
T PRK05866 38 LTGKRILLTGASSGIGEAAAEQFARRGA------TVVAVAR 72 (293)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC------EEEEEEC
Confidence 56678999985 9999999999999997 7777764
No 371
>PRK06940 short chain dehydrogenase; Provisional
Probab=82.38 E-value=2.7 Score=46.49 Aligned_cols=32 Identities=25% Similarity=0.547 Sum_probs=26.7
Q ss_pred cCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCC
Q 001747 430 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 468 (1018)
Q Consensus 430 ~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D 468 (1018)
++.++|.|+||||.++++.|+ .|. +++++|.+
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~G~------~Vv~~~r~ 33 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-AGK------KVLLADYN 33 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-CCC------EEEEEeCC
Confidence 567888899999999999996 676 78887653
No 372
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=82.38 E-value=3.9 Score=46.75 Aligned_cols=98 Identities=14% Similarity=0.079 Sum_probs=0.0
Q ss_pred HHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEE
Q 001747 29 RRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTL 108 (1018)
Q Consensus 29 ~~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~ 108 (1018)
..|++++|.|||+|.+|..+|+||..+|+ .+.+.+...-.........-+...+
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~-~Vvv~~r~~~~s~~~A~~~G~~~~s------------------------- 66 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNLRDSGV-DVVVGLREGSKSWKKAEADGFEVLT------------------------- 66 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHHHHCCC-EEEEEECCchhhHHHHHHCCCeeCC-------------------------
Q ss_pred ecCCChhhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEEeeecce
Q 001747 109 TSKLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGL 157 (1018)
Q Consensus 109 ~~~l~~~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~~~~~G~ 157 (1018)
.++.++..|+|+++..+......+++-...+-++-.++ +-+.|+
T Consensus 67 ----~~eaa~~ADVVvLaVPd~~~~~V~~~~I~~~Lk~g~iL-~~a~G~ 110 (330)
T PRK05479 67 ----VAEAAKWADVIMILLPDEVQAEVYEEEIEPNLKEGAAL-AFAHGF 110 (330)
T ss_pred ----HHHHHhcCCEEEEcCCHHHHHHHHHHHHHhcCCCCCEE-EECCCC
No 373
>PRK08605 D-lactate dehydrogenase; Validated
Probab=82.38 E-value=1.4 Score=50.46 Aligned_cols=35 Identities=29% Similarity=0.466 Sum_probs=28.8
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHh-cCcccCCCccEEEecC
Q 001747 427 KLEDAKVFIVGSGALGCEFLKNVAL-MGVSCGNQGKLTITDD 467 (1018)
Q Consensus 427 ~l~~~~v~vvG~GgiG~e~lk~La~-~Gv~~~~~g~i~ivD~ 467 (1018)
.|.+++|.|||+|.+|..+++.|+. .|+ +++..|.
T Consensus 143 ~l~g~~VgIIG~G~IG~~vA~~L~~~~g~------~V~~~d~ 178 (332)
T PRK08605 143 SIKDLKVAVIGTGRIGLAVAKIFAKGYGS------DVVAYDP 178 (332)
T ss_pred eeCCCEEEEECCCHHHHHHHHHHHhcCCC------EEEEECC
Confidence 5888999999999999999999953 454 6777664
No 374
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=82.28 E-value=1.2 Score=50.54 Aligned_cols=34 Identities=21% Similarity=0.293 Sum_probs=29.6
Q ss_pred cCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCc
Q 001747 430 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 469 (1018)
Q Consensus 430 ~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~ 469 (1018)
+.+|+|||+|++|+-++..|+..|. .++++..+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~------~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGF------DVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCC------eEEEEEeCC
Confidence 3689999999999999999999997 788877654
No 375
>PRK08655 prephenate dehydrogenase; Provisional
Probab=82.24 E-value=2.5 Score=50.36 Aligned_cols=31 Identities=32% Similarity=0.550 Sum_probs=27.1
Q ss_pred cEEEEc-cCcchHHHHHHHHhcCcccCCCccEEEecCC
Q 001747 432 KVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDD 468 (1018)
Q Consensus 432 ~v~vvG-~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D 468 (1018)
+|.||| +|++|..+++.|...|. +++++|.+
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~------~V~v~~r~ 33 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGF------EVIVTGRD 33 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCC------EEEEEECC
Confidence 799997 89999999999999987 78888753
No 376
>PRK10537 voltage-gated potassium channel; Provisional
Probab=82.24 E-value=3.9 Score=48.03 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=32.0
Q ss_pred hcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCccc
Q 001747 429 EDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIE 471 (1018)
Q Consensus 429 ~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie 471 (1018)
++.+++|+|.|.+|.++++.|...|. .++++|.|.++
T Consensus 239 ~k~HvII~G~g~lg~~v~~~L~~~g~------~vvVId~d~~~ 275 (393)
T PRK10537 239 RKDHFIICGHSPLAINTYLGLRQRGQ------AVTVIVPLGLE 275 (393)
T ss_pred cCCeEEEECCChHHHHHHHHHHHCCC------CEEEEECchhh
Confidence 46789999999999999999998887 78899988553
No 377
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=82.16 E-value=1.3 Score=49.74 Aligned_cols=32 Identities=31% Similarity=0.475 Sum_probs=28.5
Q ss_pred CcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCC
Q 001747 431 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 468 (1018)
Q Consensus 431 ~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D 468 (1018)
.||+|+|+|++|+.++..|+..|. +++++|.+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~------~V~~~~r~ 32 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGH------DVTLVARR 32 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC------eEEEEECC
Confidence 379999999999999999999986 78998863
No 378
>PTZ00117 malate dehydrogenase; Provisional
Probab=82.14 E-value=1.3 Score=50.53 Aligned_cols=35 Identities=17% Similarity=0.342 Sum_probs=31.5
Q ss_pred hcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCC
Q 001747 429 EDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 468 (1018)
Q Consensus 429 ~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D 468 (1018)
.+.||.|||+|.+|..++-.|++.|+ ..|+++|-|
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~-----~~l~L~Di~ 38 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNL-----GDVVLYDVI 38 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCC-----CeEEEEECC
Confidence 46799999999999999999999998 689999864
No 379
>PRK07063 short chain dehydrogenase; Provisional
Probab=82.10 E-value=5.9 Score=43.10 Aligned_cols=35 Identities=43% Similarity=0.616 Sum_probs=29.4
Q ss_pred HhhcCeEEEEc-CChHHHHHHHHHHHhcCCEEEEEeC
Q 001747 30 RLFASNILVSG-MQGLGAEIAKNLILAGVKSVTLHDE 65 (1018)
Q Consensus 30 ~L~~s~VlIiG-~gglG~eiaKnLvlaGVg~itlvD~ 65 (1018)
+|.+++|+|.| .||+|.++++.|+..|. ++.++|.
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r 39 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGA-AVALADL 39 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 46788999998 57999999999999997 5777763
No 380
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=82.02 E-value=2.9 Score=46.49 Aligned_cols=88 Identities=18% Similarity=0.130 Sum_probs=0.0
Q ss_pred HhcCcEEEEccCcchHHHHHHHHhc--CcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHH--hhCC
Q 001747 428 LEDAKVFIVGSGALGCEFLKNVALM--GVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAT--SINP 503 (1018)
Q Consensus 428 l~~~~v~vvG~GgiG~e~lk~La~~--Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~--~~np 503 (1018)
....||.|||+|.+|..++++|... |+ .-..+.|.+.= |++.+++... ....
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~-----el~aV~dr~~~-------------------~a~~~a~~~g~~~~~~ 59 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGLPGL-----TLSAVAVRDPQ-------------------RHADFIWGLRRPPPVV 59 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcCCCe-----EEEEEECCCHH-------------------HHHHHHHhcCCCcccC
Q ss_pred CCeEEEEecccCCccccccccccccCccEEEEcccChhHHHHHHhhccccccceE
Q 001747 504 RLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLL 558 (1018)
Q Consensus 504 ~~~i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~~~pli 558 (1018)
++ ++++.+.|+|+.|+-+...+.+. ..+.+.+++++
T Consensus 60 ~~------------------eell~~~D~Vvi~tp~~~h~e~~-~~aL~aGk~Vi 95 (271)
T PRK13302 60 PL------------------DQLATHADIVVEAAPASVLRAIV-EPVLAAGKKAI 95 (271)
T ss_pred CH------------------HHHhcCCCEEEECCCcHHHHHHH-HHHHHcCCcEE
No 381
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=81.97 E-value=3.1 Score=51.68 Aligned_cols=89 Identities=11% Similarity=0.166 Sum_probs=62.5
Q ss_pred cCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCCeEEE
Q 001747 430 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEA 509 (1018)
Q Consensus 430 ~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~~i~~ 509 (1018)
+.+|+|+|+|-+|..+++.|...|+ .++++|.|.- +++ .+++. + ...
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~------~vvvID~d~~-------------------~v~----~~~~~--g--~~v 446 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKM------RITVLERDIS-------------------AVN----LMRKY--G--YKV 446 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCC------CEEEEECCHH-------------------HHH----HHHhC--C--CeE
Confidence 4689999999999999999999998 8999998753 122 22221 1 223
Q ss_pred EecccCCccccccccccccCccEEEEcccChhHHHHHHhhcccc
Q 001747 510 LQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYF 553 (1018)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~ 553 (1018)
+..+.+. +..+...-.+++|.||.++||.+.-..+-..+++.
T Consensus 447 ~~GDat~--~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~ 488 (601)
T PRK03659 447 YYGDATQ--LELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQH 488 (601)
T ss_pred EEeeCCC--HHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHH
Confidence 4433332 22333344678999999999998887777777664
No 382
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=81.88 E-value=13 Score=42.23 Aligned_cols=32 Identities=28% Similarity=0.225 Sum_probs=29.9
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCEEEEEeC
Q 001747 34 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDE 65 (1018)
Q Consensus 34 s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~ 65 (1018)
.+|.|+|+|-+|+-+|-.|+..|.+.++++|.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi 33 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDV 33 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 48999999999999999999999878999996
No 383
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=81.82 E-value=6.1 Score=39.62 Aligned_cols=59 Identities=20% Similarity=0.384 Sum_probs=41.9
Q ss_pred CeEEEEc-CChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEecC
Q 001747 34 SNILVSG-MQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 111 (1018)
Q Consensus 34 s~VlIiG-~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~~~ 111 (1018)
++|+|.| .+|+|.++++.|+..|-..+.++... .-..+++...+.+.+.+ .++.....+
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~-----------------~~~~~~~~l~~~l~~~~--~~~~~~~~D 60 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRS-----------------EDSEGAQELIQELKAPG--AKITFIECD 60 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESS-----------------CHHHHHHHHHHHHHHTT--SEEEEEESE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeec-----------------ccccccccccccccccc--ccccccccc
Confidence 3678887 78999999999999999899988764 01235556666666554 555555443
No 384
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=81.82 E-value=4 Score=45.12 Aligned_cols=71 Identities=21% Similarity=0.233 Sum_probs=46.8
Q ss_pred EEEEcC-ChHHHHHHHHHHHhc--C-CEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhC---CCcEEEEE
Q 001747 36 ILVSGM-QGLGAEIAKNLILAG--V-KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELN---NAVVLSTL 108 (1018)
Q Consensus 36 VlIiG~-gglG~eiaKnLvlaG--V-g~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elN---p~V~v~~~ 108 (1018)
|.|||+ |.+|..++-.|+..| . .+++|+|.+. .+++.....|+... +..+|+..
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~-------------------~~l~~~~~dl~~~~~~~~~~~i~~~ 61 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDE-------------------EKLKGVAMDLQDAVEPLADIKVSIT 61 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCc-------------------ccchHHHHHHHHhhhhccCcEEEEC
Confidence 579999 999999999999998 4 6899999533 12222233333332 23455542
Q ss_pred ecCCChhhccCCceEEEcc
Q 001747 109 TSKLTKEQLSDFQAVVFTD 127 (1018)
Q Consensus 109 ~~~l~~~~~~~~dvVI~~~ 127 (1018)
. ++ .+.+.+.|+||.+.
T Consensus 62 ~-d~-~~~~~~aDiVv~t~ 78 (263)
T cd00650 62 D-DP-YEAFKDADVVIITA 78 (263)
T ss_pred C-ch-HHHhCCCCEEEECC
Confidence 2 11 35678999999965
No 385
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=81.82 E-value=1.3 Score=49.85 Aligned_cols=35 Identities=14% Similarity=0.434 Sum_probs=31.3
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecC
Q 001747 427 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 467 (1018)
Q Consensus 427 ~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~ 467 (1018)
.|.+++++|+|+|++|..+++.|..+|. +++++|.
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~------~V~v~~R 182 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALGA------RVFVGAR 182 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCCC------EEEEEeC
Confidence 5678999999999999999999999997 7888764
No 386
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=81.79 E-value=2.7 Score=47.43 Aligned_cols=68 Identities=22% Similarity=0.255 Sum_probs=47.3
Q ss_pred EEcCChHHHHHHHHHHHhcC-CEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhC----CCcEEEEEecCC
Q 001747 38 VSGMQGLGAEIAKNLILAGV-KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELN----NAVVLSTLTSKL 112 (1018)
Q Consensus 38 IiG~gglG~eiaKnLvlaGV-g~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elN----p~V~v~~~~~~l 112 (1018)
|||+|.+|+.+|-.|+..|+ ++|.|+|-. ..+++..+.-|+... ..++|.. -
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~-------------------~~~~~g~a~Dl~~~~~~~~~~~~i~~----~ 57 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDIN-------------------KDKAEGEAMDLQHAASFLPTPKKIRS----G 57 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------CChhhHHHHHHHHhhcccCCCeEEec----C
Confidence 68999999999999999997 579999852 123444444444433 3344442 2
Q ss_pred ChhhccCCceEEEccc
Q 001747 113 TKEQLSDFQAVVFTDI 128 (1018)
Q Consensus 113 ~~~~~~~~dvVI~~~~ 128 (1018)
+.+.+++.|+||.+..
T Consensus 58 ~~~~~~daDivVitag 73 (299)
T TIGR01771 58 DYSDCKDADLVVITAG 73 (299)
T ss_pred CHHHHCCCCEEEECCC
Confidence 3467899999998765
No 387
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=81.74 E-value=9.3 Score=43.53 Aligned_cols=31 Identities=29% Similarity=0.368 Sum_probs=27.5
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCEEEEEeCC
Q 001747 35 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 66 (1018)
Q Consensus 35 ~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d 66 (1018)
+|.|+|+|++|+.++..|..+|. .+++++.+
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~-~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKI-SVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCC-eEEEEecC
Confidence 69999999999999999999994 67888753
No 388
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=81.72 E-value=1.5 Score=48.90 Aligned_cols=34 Identities=24% Similarity=0.243 Sum_probs=30.5
Q ss_pred cCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCC
Q 001747 430 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 468 (1018)
Q Consensus 430 ~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D 468 (1018)
+++++|+|+||.|..++-.|+..|+ .+|+|++.+
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~-----~~i~i~nR~ 155 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGF-----TDGTIVARN 155 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCC-----CEEEEEeCC
Confidence 3589999999999999999999999 889998643
No 389
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=81.72 E-value=7 Score=43.09 Aligned_cols=32 Identities=25% Similarity=0.386 Sum_probs=26.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcC--CEEEEEeC
Q 001747 34 SNILVSGMQGLGAEIAKNLILAGV--KSVTLHDE 65 (1018)
Q Consensus 34 s~VlIiG~gglG~eiaKnLvlaGV--g~itlvD~ 65 (1018)
.+|.|||+|.+|..++..|..+|. ..++++|.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r 36 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDP 36 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcC
Confidence 479999999999999999999984 35666653
No 390
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=81.69 E-value=5.3 Score=45.32 Aligned_cols=84 Identities=19% Similarity=0.190 Sum_probs=52.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEec---
Q 001747 34 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS--- 110 (1018)
Q Consensus 34 s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~~--- 110 (1018)
.||+|+|+|++|+-.+-.|.++| ..++++-.+. +++ ++++- ...+.....
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~~--------------------~~~----~l~~~--GL~i~~~~~~~~ 53 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTLLVRSR--------------------RLE----ALKKK--GLRIEDEGGNFT 53 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-CeEEEEecHH--------------------HHH----HHHhC--CeEEecCCCccc
Confidence 48999999999999999999999 7666653211 122 22221 122222211
Q ss_pred -----CCChhhccCCceEEEcccCHHHHHHHHHHHHhcC
Q 001747 111 -----KLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQ 144 (1018)
Q Consensus 111 -----~l~~~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~ 144 (1018)
..+.+.+..+|+||++.-+......+..+....+
T Consensus 54 ~~~~~~~~~~~~~~~Dlviv~vKa~q~~~al~~l~~~~~ 92 (307)
T COG1893 54 TPVVAATDAEALGPADLVIVTVKAYQLEEALPSLAPLLG 92 (307)
T ss_pred cccccccChhhcCCCCEEEEEeccccHHHHHHHhhhcCC
Confidence 1123556689999999877766666666555444
No 391
>PRK06139 short chain dehydrogenase; Provisional
Probab=81.68 E-value=2.4 Score=48.47 Aligned_cols=35 Identities=26% Similarity=0.382 Sum_probs=29.9
Q ss_pred HHhcCcEEEEcc-CcchHHHHHHHHhcCcccCCCccEEEecC
Q 001747 427 KLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 467 (1018)
Q Consensus 427 ~l~~~~v~vvG~-GgiG~e~lk~La~~Gv~~~~~g~i~ivD~ 467 (1018)
.+.+++|+|.|+ ||||.++++.|+..|. ++++++.
T Consensus 4 ~l~~k~vlITGAs~GIG~aia~~la~~G~------~Vvl~~R 39 (330)
T PRK06139 4 PLHGAVVVITGASSGIGQATAEAFARRGA------RLVLAAR 39 (330)
T ss_pred CCCCCEEEEcCCCCHHHHHHHHHHHHCCC------EEEEEEC
Confidence 466789999996 8999999999999998 6877764
No 392
>PLN02240 UDP-glucose 4-epimerase
Probab=81.66 E-value=9.7 Score=43.46 Aligned_cols=34 Identities=35% Similarity=0.528 Sum_probs=29.1
Q ss_pred hhcCeEEEEcC-ChHHHHHHHHHHHhcCCEEEEEeC
Q 001747 31 LFASNILVSGM-QGLGAEIAKNLILAGVKSVTLHDE 65 (1018)
Q Consensus 31 L~~s~VlIiG~-gglG~eiaKnLvlaGVg~itlvD~ 65 (1018)
|++++|+|.|+ |.+|..+++.|...|. +++++|.
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~~ 37 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAGY-KVVVIDN 37 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 56789999985 8899999999999996 7888873
No 393
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=81.62 E-value=1.3 Score=50.02 Aligned_cols=36 Identities=22% Similarity=0.334 Sum_probs=32.4
Q ss_pred HHHHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEec
Q 001747 425 QKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITD 466 (1018)
Q Consensus 425 q~~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD 466 (1018)
.+.|++++|.|||.|.+|..++++|..+|+ ++++.|
T Consensus 11 ~~~LkgKtVGIIG~GsIG~amA~nL~d~G~------~ViV~~ 46 (335)
T PRK13403 11 VELLQGKTVAVIGYGSQGHAQAQNLRDSGV------EVVVGV 46 (335)
T ss_pred hhhhCcCEEEEEeEcHHHHHHHHHHHHCcC------EEEEEE
Confidence 368999999999999999999999999999 777765
No 394
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=81.54 E-value=7.5 Score=47.16 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=30.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCc
Q 001747 34 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 67 (1018)
Q Consensus 34 s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~ 67 (1018)
.+|.|||+|.+|+.+|.+|+.+|. .++++|.+.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~-~V~v~D~~~ 37 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGI-DVAVFDPHP 37 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence 479999999999999999999998 899999743
No 395
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.50 E-value=4.8 Score=48.08 Aligned_cols=124 Identities=15% Similarity=0.147 Sum_probs=71.9
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEecCC
Q 001747 33 ASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKL 112 (1018)
Q Consensus 33 ~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~~~l 112 (1018)
...|+|+|+|+.|..+|+-|...|. .++..|...- .. ..+.|.+.++.+.+.. ...
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~~~-----------------~~----~~~~l~~~~~g~~~~~--~~~ 61 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGI-PFAVMDSREQ-----------------PP----GLDTLAREFPDVELRC--GGF 61 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCC-eEEEEeCCCC-----------------ch----hHHHHHhhcCCcEEEe--CCC
Confidence 5679999999999999999999997 7888885320 00 1123544444444443 333
Q ss_pred ChhhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEEeeecceeEEEEeecCCceEEecCCCCCCcceeeeee
Q 001747 113 TKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFGPEFTVVDVDGEDPHTGIIASI 187 (1018)
Q Consensus 113 ~~~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~~~~~G~~G~vf~d~g~~~~v~d~~ge~p~~~~i~~i 187 (1018)
+++.+.++|+||.+..=.. ....-..+++++ +|++.-. .+.+.++ -..--.|.=++|....+.++.+|
T Consensus 62 ~~~~~~~~d~vV~sp~i~~-~~p~~~~a~~~~--i~i~~~~--el~~~~~--~~~~I~VTGT~GKTTTt~li~~i 129 (448)
T PRK03803 62 DCELLVQASEIIISPGLAL-DTPALRAAAAMG--IEVIGDI--ELFAREA--KAPVIAITGSNGKSTVTTLVGEM 129 (448)
T ss_pred ChHHhcCCCEEEECCCCCC-CCHHHHHHHHCC--CcEEEHH--HHHHHhc--CCCEEEEECCCcHHHHHHHHHHH
Confidence 4567788999998764111 112334557788 8887411 1122221 11123344456666555555554
No 396
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=81.33 E-value=6.3 Score=45.49 Aligned_cols=113 Identities=16% Similarity=0.204 Sum_probs=0.0
Q ss_pred CHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEE--EeCCc--cCcccCCcccccCcC-----------ccCchH
Q 001747 24 GRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTL--HDEGT--VELWDLSSNFVFSDN-----------DIGKNR 88 (1018)
Q Consensus 24 G~~~q~~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itl--vD~d~--v~~~dL~~qf~~~~~-----------diGk~k 88 (1018)
+.+.++--.+.+|.|+|+||-|+-++.+|...|+..+.+ +|.|. ....+..+-+++.++ ++|+.-
T Consensus 8 ~~~~~~~~~~~~i~viGvGg~G~n~v~~l~~~~~~~~~~iainTD~~~L~~~~a~~ki~iG~~~t~G~GaG~~~~~G~~~ 87 (349)
T TIGR00065 8 FRELIQPSNKAKIKVIGVGGGGNNTVNRMLEEGVEGVEFIAINTDAQHLKTTKADKKILIGKKLTRGLGAGGNPEIGRKA 87 (349)
T ss_pred hhhhcCcccCCeEEEEEeCCcHHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCCeEEEcCCCCCCCCCCCCCHHHHHHH
Q ss_pred HHHHHHHHHhhCCCcEEEEEecCCChhhccCCceEEEccc-----CHHHHHHHHHHHHhcCCCceeEEeeec
Q 001747 89 ALASVQKLQELNNAVVLSTLTSKLTKEQLSDFQAVVFTDI-----SLDKAIEFDDFCHNHQPAISFIKAEVR 155 (1018)
Q Consensus 89 a~a~~~~L~elNp~V~v~~~~~~l~~~~~~~~dvVI~~~~-----~~~~~~~ln~~c~~~~~~i~fi~~~~~ 155 (1018)
++...+++++ .++++|.|+++.. ..-....+.+++++.+ ++.+..-+.
T Consensus 88 aee~~d~Ir~-----------------~le~~D~vfI~aglGGGTGSG~apvia~~ake~~--~l~vaivt~ 140 (349)
T TIGR00065 88 AEESRDEIRK-----------------LLEGADMVFITAGMGGGTGTGAAPVVAKIAKELG--ALTVAVVTK 140 (349)
T ss_pred HHHHHHHHHH-----------------HHhCCCEEEEEEeccCccchhHHHHHHHHHHHcC--CCEEEEEeC
No 397
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=81.31 E-value=6.6 Score=48.40 Aligned_cols=34 Identities=18% Similarity=0.445 Sum_probs=30.2
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCc
Q 001747 33 ASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 67 (1018)
Q Consensus 33 ~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~ 67 (1018)
+-||+|+|+|.+|.++++.|...|. .++++|.|.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~ 450 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSR 450 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCC-CEEEEECCH
Confidence 5799999999999999999999997 688888643
No 398
>PRK12939 short chain dehydrogenase; Provisional
Probab=81.31 E-value=3 Score=44.89 Aligned_cols=33 Identities=24% Similarity=0.533 Sum_probs=28.1
Q ss_pred HhcCcEEEEcc-CcchHHHHHHHHhcCcccCCCccEEEec
Q 001747 428 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITD 466 (1018)
Q Consensus 428 l~~~~v~vvG~-GgiG~e~lk~La~~Gv~~~~~g~i~ivD 466 (1018)
+.+++++|.|+ |+||.++++.|+..|. ++++++
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~------~v~~~~ 38 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGA------TVAFND 38 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCC------EEEEEe
Confidence 45788999995 9999999999999997 677664
No 399
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=81.28 E-value=3 Score=46.22 Aligned_cols=97 Identities=20% Similarity=0.164 Sum_probs=0.0
Q ss_pred cEEEEc-cCcchHHHHHHHHh-cCcccCCCccEEEec-CCcccccccCcccCcccccccchHHHHHHHHHHhhCCCCeEE
Q 001747 432 KVFIVG-SGALGCEFLKNVAL-MGVSCGNQGKLTITD-DDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIE 508 (1018)
Q Consensus 432 ~v~vvG-~GgiG~e~lk~La~-~Gv~~~~~g~i~ivD-~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~~i~ 508 (1018)
||.|+| +|.+|..+++.+.. -++ .-+.++| .+.-.. ...+++........+.+.
T Consensus 3 kV~IiGa~G~MG~~i~~~i~~~~~~-----elvav~d~~~~~~~------------------~~~~~~~~~~~~~gv~~~ 59 (266)
T TIGR00036 3 KVAVAGAAGRMGRELIKAALAAEGL-----QLVAAFERHGSSLQ------------------GTDAGELAGIGKVGVPVT 59 (266)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCC-----EEEEEEecCCcccc------------------CCCHHHhcCcCcCCceee
Q ss_pred EEecccCCccccccccccccCccEEEEcccChhHHHHHHhhccccccceEecccCCc
Q 001747 509 ALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGA 565 (1018)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~~~pli~~g~~g~ 565 (1018)
.-...+.. .+|+||+++ ++++-..+-..|.++++|+| +|+.|+
T Consensus 60 ~d~~~l~~------------~~DvVIdfT-~p~~~~~~~~~al~~g~~vV-igttg~ 102 (266)
T TIGR00036 60 DDLEAVET------------DPDVLIDFT-TPEGVLNHLKFALEHGVRLV-VGTTGF 102 (266)
T ss_pred CCHHHhcC------------CCCEEEECC-ChHHHHHHHHHHHHCCCCEE-EECCCC
No 400
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=81.26 E-value=0.78 Score=52.09 Aligned_cols=92 Identities=20% Similarity=0.233 Sum_probs=58.0
Q ss_pred HHHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCC
Q 001747 426 KKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRL 505 (1018)
Q Consensus 426 ~~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~ 505 (1018)
..+.+++|.++|+|.||.++++.|.-.|- .|..++.++ ..++ .+. +.+..
T Consensus 158 ~~~~gK~vgilG~G~IG~~ia~rL~~Fg~--------------~i~y~~r~~---------~~~~--~~~----~~~~~- 207 (336)
T KOG0069|consen 158 YDLEGKTVGILGLGRIGKAIAKRLKPFGC--------------VILYHSRTQ---------LPPE--EAY----EYYAE- 207 (336)
T ss_pred ccccCCEEEEecCcHHHHHHHHhhhhccc--------------eeeeecccC---------Cchh--hHH----Hhccc-
Confidence 57889999999999999999999988442 222222111 1111 111 11111
Q ss_pred eEEEEecccCCccccccccccccCcc-EEEEcccChhHHHHHHhhccccccc---eEecc
Q 001747 506 NIEALQNRVGPETENVFDDTFWENIT-CVINALDNVNARLYVDQRCLYFQKP---LLESG 561 (1018)
Q Consensus 506 ~i~~~~~~~~~~~~~~~~~~~~~~~d-vVi~alDn~~ar~~v~~~c~~~~~p---li~~g 561 (1018)
. +++ ++++.+.| +|++|-.+.+++..+|+.....-++ +|+.+
T Consensus 208 -------~-----~d~--~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~a 253 (336)
T KOG0069|consen 208 -------F-----VDI--EELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTA 253 (336)
T ss_pred -------c-----cCH--HHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEecc
Confidence 1 111 46788889 5677778999999999887776543 45544
No 401
>PLN02688 pyrroline-5-carboxylate reductase
Probab=81.20 E-value=5.6 Score=43.84 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=21.9
Q ss_pred CcEEEEccCcchHHHHHHHHhcCc
Q 001747 431 AKVFIVGSGALGCEFLKNVALMGV 454 (1018)
Q Consensus 431 ~~v~vvG~GgiG~e~lk~La~~Gv 454 (1018)
.||.+||+|.+|..+++.|...|.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~ 24 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGV 24 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCC
Confidence 379999999999999999999884
No 402
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=81.19 E-value=1.4 Score=50.40 Aligned_cols=36 Identities=28% Similarity=0.397 Sum_probs=32.3
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCC
Q 001747 427 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 468 (1018)
Q Consensus 427 ~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D 468 (1018)
.|.+++|.|||+|.+|..+++.|...|. +++.+|..
T Consensus 143 ~l~g~~VgIIG~G~IG~~vA~~L~~~G~------~V~~~d~~ 178 (330)
T PRK12480 143 PVKNMTVAIIGTGRIGAATAKIYAGFGA------TITAYDAY 178 (330)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEEeCC
Confidence 4788899999999999999999999987 88888854
No 403
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=81.16 E-value=7.3 Score=46.46 Aligned_cols=103 Identities=14% Similarity=0.165 Sum_probs=63.2
Q ss_pred hcCeEEEEc-CChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEec
Q 001747 32 FASNILVSG-MQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 110 (1018)
Q Consensus 32 ~~s~VlIiG-~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~~ 110 (1018)
+..||+|.| .|-+|+.+++.|...|. +++.+|....... .+. ..+.. ++ .++....
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~-~V~~ldr~~~~~~---------------~~~----~~~~~-~~--~~~~~~~ 175 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLIGRGD-EVIVIDNFFTGRK---------------ENL----VHLFG-NP--RFELIRH 175 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCCCccH---------------hHh----hhhcc-CC--ceEEEEC
Confidence 346899998 57899999999999996 6777874321000 000 01111 22 3344444
Q ss_pred CCChhhccCCceEEEccc---------C--------HHHHHHHHHHHHhcCCCceeEEeeecceeE
Q 001747 111 KLTKEQLSDFQAVVFTDI---------S--------LDKAIEFDDFCHNHQPAISFIKAEVRGLFG 159 (1018)
Q Consensus 111 ~l~~~~~~~~dvVI~~~~---------~--------~~~~~~ln~~c~~~~~~i~fi~~~~~G~~G 159 (1018)
++.+..+.++|+||-+.. + ...-..+-+.|++++ +.||.+++.+.||
T Consensus 176 Di~~~~~~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g--~r~V~~SS~~VYg 239 (436)
T PLN02166 176 DVVEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG--ARFLLTSTSEVYG 239 (436)
T ss_pred ccccccccCCCEEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhC--CEEEEECcHHHhC
Confidence 444445667888885432 0 111234557899988 7899998888776
No 404
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=81.14 E-value=1.5 Score=47.18 Aligned_cols=38 Identities=32% Similarity=0.406 Sum_probs=34.1
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCc
Q 001747 427 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 469 (1018)
Q Consensus 427 ~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~ 469 (1018)
.|.+++|+|.|.|.+|..+++.|...|. ..+.+.|.+-
T Consensus 20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~-----~vV~vsD~~g 57 (217)
T cd05211 20 SLEGLTVAVQGLGNVGWGLAKKLAEEGG-----KVLAVSDPDG 57 (217)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCC-----EEEEEEcCCC
Confidence 5788999999999999999999999998 7888888654
No 405
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=81.05 E-value=1.7 Score=53.11 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=31.6
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecC
Q 001747 427 KLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDD 467 (1018)
Q Consensus 427 ~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~ 467 (1018)
.|.+++|.|||.|.+|.++++.|...|+ +++.+|.
T Consensus 135 ~l~gktvgIiG~G~IG~~vA~~l~~fG~------~V~~~d~ 169 (525)
T TIGR01327 135 ELYGKTLGVIGLGRIGSIVAKRAKAFGM------KVLAYDP 169 (525)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEECC
Confidence 5889999999999999999999998887 7888874
No 406
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=81.02 E-value=1.1 Score=49.15 Aligned_cols=45 Identities=22% Similarity=0.304 Sum_probs=36.5
Q ss_pred HHHhcCcEEEEccCcchHHHHHHHHhcCcccCC-----CccEEEecCCcc
Q 001747 426 KKLEDAKVFIVGSGALGCEFLKNVALMGVSCGN-----QGKLTITDDDVI 470 (1018)
Q Consensus 426 ~~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~-----~g~i~ivD~D~I 470 (1018)
++|.+.||+++|+|+-|+-+++.|...|+..|- ..+|+++|..-+
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gl 70 (254)
T cd00762 21 KKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGL 70 (254)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCe
Confidence 468889999999999999999999999982110 138999998754
No 407
>PLN03075 nicotianamine synthase; Provisional
Probab=81.01 E-value=56 Score=36.90 Aligned_cols=55 Identities=20% Similarity=0.001 Sum_probs=35.4
Q ss_pred CchhhhhhhcCHHH--HHHHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCc
Q 001747 411 SRYDAQISVFGAKL--QKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 469 (1018)
Q Consensus 411 ~rydrq~~~~G~~~--q~~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~ 469 (1018)
.+|.+...+=|.-. ......++|+-||||..|-..+-.++..+- +|+++=+|.|.
T Consensus 103 ~nY~~L~~lE~~~L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p----~~~~~giD~d~ 159 (296)
T PLN03075 103 NNYLKLSKLEFDLLSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLP----TTSFHNFDIDP 159 (296)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCC----CCEEEEEeCCH
Confidence 45666655433222 112288899999999988766655555543 37888888764
No 408
>PRK07576 short chain dehydrogenase; Provisional
Probab=81.00 E-value=5.2 Score=43.86 Aligned_cols=39 Identities=28% Similarity=0.417 Sum_probs=32.6
Q ss_pred HHHHhhcCeEEEEcC-ChHHHHHHHHHHHhcCCEEEEEeCC
Q 001747 27 TMRRLFASNILVSGM-QGLGAEIAKNLILAGVKSVTLHDEG 66 (1018)
Q Consensus 27 ~q~~L~~s~VlIiG~-gglG~eiaKnLvlaGVg~itlvD~d 66 (1018)
++.+|.+++|+|.|+ ||+|.++++.|+..|. ++.++|.+
T Consensus 3 ~~~~~~~k~ilItGasggIG~~la~~l~~~G~-~V~~~~r~ 42 (264)
T PRK07576 3 TMFDFAGKNVVVVGGTSGINLGIAQAFARAGA-NVAVASRS 42 (264)
T ss_pred ccccCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 455788899999986 7999999999999997 57887753
No 409
>PRK07774 short chain dehydrogenase; Provisional
Probab=80.90 E-value=2.2 Score=45.96 Aligned_cols=35 Identities=20% Similarity=0.510 Sum_probs=30.1
Q ss_pred HhcCcEEEEcc-CcchHHHHHHHHhcCcccCCCccEEEecCC
Q 001747 428 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 468 (1018)
Q Consensus 428 l~~~~v~vvG~-GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D 468 (1018)
+.+++++|.|+ |+||.++++.|+..|. +++++|.+
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~------~vi~~~r~ 39 (250)
T PRK07774 4 FDDKVAIVTGAAGGIGQAYAEALAREGA------SVVVADIN 39 (250)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEeCC
Confidence 56788999996 9999999999999997 78887654
No 410
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=80.89 E-value=12 Score=42.56 Aligned_cols=36 Identities=17% Similarity=0.268 Sum_probs=29.4
Q ss_pred hhcCeEEEEcC-ChHHHHHHHHHHHhc-CCEEEEEeCC
Q 001747 31 LFASNILVSGM-QGLGAEIAKNLILAG-VKSVTLHDEG 66 (1018)
Q Consensus 31 L~~s~VlIiG~-gglG~eiaKnLvlaG-Vg~itlvD~d 66 (1018)
|++++|+|.|. |++|+.+++.|+..| ..+++++|.+
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~ 39 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRD 39 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCC
Confidence 45678999985 789999999999987 4578888743
No 411
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=80.83 E-value=1.9 Score=47.24 Aligned_cols=103 Identities=17% Similarity=0.116 Sum_probs=62.0
Q ss_pred HHhhcCeEEEEcCChHHHHHHHHHHHh----cC------CEEEEEeCCcc-CcccCCcccccCcCccCchHHHHHHHHHH
Q 001747 29 RRLFASNILVSGMQGLGAEIAKNLILA----GV------KSVTLHDEGTV-ELWDLSSNFVFSDNDIGKNRALASVQKLQ 97 (1018)
Q Consensus 29 ~~L~~s~VlIiG~gglG~eiaKnLvla----GV------g~itlvD~d~v-~~~dL~~qf~~~~~diGk~ka~a~~~~L~ 97 (1018)
++|++.||+++|+|+.|.-|++.|+.+ |+ ++|.++|.+-+ +... +++ ...-.+..+
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r---------~~l----~~~~~~~a~ 87 (255)
T PF03949_consen 21 KKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDR---------EDL----NPHKKPFAR 87 (255)
T ss_dssp S-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTT---------SSH----SHHHHHHHB
T ss_pred CCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccC---------ccC----Chhhhhhhc
Confidence 369999999999999999999999999 99 89999998533 2221 112 111123344
Q ss_pred hhCCCcEEEEEecCCChhhccCC--ceEEEccc--CHHHHHHHHHHHHhcCCCceeEE
Q 001747 98 ELNNAVVLSTLTSKLTKEQLSDF--QAVVFTDI--SLDKAIEFDDFCHNHQPAISFIK 151 (1018)
Q Consensus 98 elNp~V~v~~~~~~l~~~~~~~~--dvVI~~~~--~~~~~~~ln~~c~~~~~~i~fi~ 151 (1018)
..++.-.. .++ .+.++.. |++|.+.. ..-+...+..++..+. .|.|.
T Consensus 88 ~~~~~~~~----~~L-~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~e--rPIIF 138 (255)
T PF03949_consen 88 KTNPEKDW----GSL-LEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNE--RPIIF 138 (255)
T ss_dssp SSSTTT------SSH-HHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSS--SEEEE
T ss_pred cCcccccc----cCH-HHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCC--CCEEE
Confidence 44443211 111 2456666 88887653 2334556667777766 56663
No 412
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=80.72 E-value=4.1 Score=44.23 Aligned_cols=26 Identities=8% Similarity=0.346 Sum_probs=23.0
Q ss_pred hcCcEEEEccCcchHHHHHHHHhcCc
Q 001747 429 EDAKVFIVGSGALGCEFLKNVALMGV 454 (1018)
Q Consensus 429 ~~~~v~vvG~GgiG~e~lk~La~~Gv 454 (1018)
.+.||.|||+|.+|..+++.|+..|.
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~ 28 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSK 28 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCC
Confidence 35689999999999999999998873
No 413
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.71 E-value=2.8 Score=47.23 Aligned_cols=36 Identities=19% Similarity=0.327 Sum_probs=29.9
Q ss_pred HHHhcCcEEEEc-cCcchHHHHHHHHhcCcccCCCccEEEecC
Q 001747 426 KKLEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDD 467 (1018)
Q Consensus 426 ~~l~~~~v~vvG-~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~ 467 (1018)
..+.+++++|.| .||||.++++.|+..|. +++++|.
T Consensus 8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga------~Vv~~~~ 44 (306)
T PRK07792 8 TDLSGKVAVVTGAAAGLGRAEALGLARLGA------TVVVNDV 44 (306)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCC------EEEEecC
Confidence 346678899998 58899999999999997 6777764
No 414
>PRK05875 short chain dehydrogenase; Provisional
Probab=80.70 E-value=4.2 Score=44.72 Aligned_cols=34 Identities=15% Similarity=0.352 Sum_probs=29.5
Q ss_pred HhcCcEEEEcc-CcchHHHHHHHHhcCcccCCCccEEEecC
Q 001747 428 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 467 (1018)
Q Consensus 428 l~~~~v~vvG~-GgiG~e~lk~La~~Gv~~~~~g~i~ivD~ 467 (1018)
+.+++++|.|+ |+||.++++.|+..|. ++++++.
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~------~V~~~~r 39 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGA------AVMIVGR 39 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC------eEEEEeC
Confidence 56789999995 8999999999999998 6777764
No 415
>PRK06398 aldose dehydrogenase; Validated
Probab=80.69 E-value=3.8 Score=44.75 Aligned_cols=74 Identities=14% Similarity=0.130 Sum_probs=46.8
Q ss_pred HHhcCcEEEEc-cCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHH-HHHHHHHHhhCCC
Q 001747 427 KLEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKS-TVAASAATSINPR 504 (1018)
Q Consensus 427 ~l~~~~v~vvG-~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka-~va~~~l~~~np~ 504 (1018)
.+++++++|.| .||||.++++.|+..|. ++++++.+.-+.. +..+-..|+..+.+ +.+.+.+.+....
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~------~Vi~~~r~~~~~~----~~~~~~~D~~~~~~i~~~~~~~~~~~~~ 72 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGS------NVINFDIKEPSYN----DVDYFKVDVSNKEQVIKGIDYVISKYGR 72 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC------eEEEEeCCccccC----ceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 36678999998 67999999999999997 7888876532211 22334457766543 3334444444444
Q ss_pred CeEEEE
Q 001747 505 LNIEAL 510 (1018)
Q Consensus 505 ~~i~~~ 510 (1018)
+.+-.+
T Consensus 73 id~li~ 78 (258)
T PRK06398 73 IDILVN 78 (258)
T ss_pred CCEEEE
Confidence 444444
No 416
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=80.69 E-value=6.4 Score=47.53 Aligned_cols=123 Identities=15% Similarity=0.188 Sum_probs=66.9
Q ss_pred CcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccch---HHHHHHHHHHhh-CCCCe
Q 001747 431 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQA---KSTVAASAATSI-NPRLN 506 (1018)
Q Consensus 431 ~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~---Ka~va~~~l~~~-np~~~ 506 (1018)
.+|.+||+|..|..+++||+..|. .+++.|.+.=....+... ...-|-. -+..+++.+..+ .|++-
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~------~V~V~NRt~~k~~~l~~~----~~~~Ga~~~~~a~s~~e~v~~l~~~dvI 76 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGF------PISVYNRTTSKVDETVER----AKKEGNLPLYGFKDPEDFVLSIQKPRSV 76 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCC------eEEEECCCHHHHHHHHHh----hhhcCCcccccCCCHHHHHhcCCCCCEE
Confidence 479999999999999999999998 889887652211111000 0000110 112233333322 24443
Q ss_pred EEEEecccCCccccccc--cccccCccEEEEcccC-hhHHHHHHhhccccccceEecccCCc
Q 001747 507 IEALQNRVGPETENVFD--DTFWENITCVINALDN-VNARLYVDQRCLYFQKPLLESGTLGA 565 (1018)
Q Consensus 507 i~~~~~~~~~~~~~~~~--~~~~~~~dvVi~alDn-~~ar~~v~~~c~~~~~pli~~g~~g~ 565 (1018)
+..+.. .+..+.+++ ...++.=|+||++.-. ++.-..+.+.+...++.+++++..|.
T Consensus 77 i~~v~~--~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG 136 (493)
T PLN02350 77 IILVKA--GAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGG 136 (493)
T ss_pred EEECCC--cHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCC
Confidence 433321 111122221 1223455788887654 33334446677778888888888765
No 417
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=80.67 E-value=3.6 Score=46.68 Aligned_cols=73 Identities=19% Similarity=0.221 Sum_probs=48.1
Q ss_pred eEEEEcC-ChHHHHHHHHHHHhcC-CEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEecCC
Q 001747 35 NILVSGM-QGLGAEIAKNLILAGV-KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKL 112 (1018)
Q Consensus 35 ~VlIiG~-gglG~eiaKnLvlaGV-g~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~~~l 112 (1018)
+|.|+|+ |.+|+.+|-.|+..|+ .++.|+|-.. |+.-+--|+.-.+.+++......-
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~---------------------a~g~alDL~~~~~~~~i~~~~~~~ 60 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVN---------------------TPGVAADLSHINTPAKVTGYLGPE 60 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCc---------------------cceeehHhHhCCCcceEEEecCCC
Confidence 7999999 9999999999999897 6899999641 111111233332445565431110
Q ss_pred -ChhhccCCceEEEccc
Q 001747 113 -TKEQLSDFQAVVFTDI 128 (1018)
Q Consensus 113 -~~~~~~~~dvVI~~~~ 128 (1018)
..+.+++.|+||.|..
T Consensus 61 ~~y~~~~daDivvitaG 77 (310)
T cd01337 61 ELKKALKGADVVVIPAG 77 (310)
T ss_pred chHHhcCCCCEEEEeCC
Confidence 1356889999998764
No 418
>PRK06720 hypothetical protein; Provisional
Probab=80.66 E-value=3.9 Score=42.11 Aligned_cols=36 Identities=28% Similarity=0.329 Sum_probs=30.1
Q ss_pred HHhcCcEEEEcc-CcchHHHHHHHHhcCcccCCCccEEEecCC
Q 001747 427 KLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 468 (1018)
Q Consensus 427 ~l~~~~v~vvG~-GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D 468 (1018)
++.++.++|.|+ ||||.++++.|+..|. ++.++|.+
T Consensus 13 ~l~gk~~lVTGa~~GIG~aia~~l~~~G~------~V~l~~r~ 49 (169)
T PRK06720 13 KLAGKVAIVTGGGIGIGRNTALLLAKQGA------KVIVTDID 49 (169)
T ss_pred ccCCCEEEEecCCChHHHHHHHHHHHCCC------EEEEEECC
Confidence 367788999996 5699999999999997 78888755
No 419
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=80.66 E-value=6.5 Score=43.19 Aligned_cols=23 Identities=13% Similarity=0.206 Sum_probs=21.6
Q ss_pred eEEEEcCChHHHHHHHHHHHhcC
Q 001747 35 NILVSGMQGLGAEIAKNLILAGV 57 (1018)
Q Consensus 35 ~VlIiG~gglG~eiaKnLvlaGV 57 (1018)
+|.|||+|-+|..+++.|...|.
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~ 24 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPA 24 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCC
Confidence 69999999999999999999885
No 420
>PRK14982 acyl-ACP reductase; Provisional
Probab=80.64 E-value=1.4 Score=50.38 Aligned_cols=37 Identities=27% Similarity=0.485 Sum_probs=31.8
Q ss_pred HHhcCcEEEEcc-CcchHHHHHHHHh-cCcccCCCccEEEecCC
Q 001747 427 KLEDAKVFIVGS-GALGCEFLKNVAL-MGVSCGNQGKLTITDDD 468 (1018)
Q Consensus 427 ~l~~~~v~vvG~-GgiG~e~lk~La~-~Gv~~~~~g~i~ivD~D 468 (1018)
.|.+++|+|+|+ |.+|+++++.|+. .|+ .++++++.+
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv-----~~lilv~R~ 190 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGV-----AELLLVARQ 190 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCC-----CEEEEEcCC
Confidence 588899999998 8999999999985 578 789988643
No 421
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=80.60 E-value=5 Score=46.04 Aligned_cols=35 Identities=20% Similarity=0.108 Sum_probs=29.1
Q ss_pred hhcCeEEEEcC-ChHHHHHHHHHHHhcCCEEEEEeCC
Q 001747 31 LFASNILVSGM-QGLGAEIAKNLILAGVKSVTLHDEG 66 (1018)
Q Consensus 31 L~~s~VlIiG~-gglG~eiaKnLvlaGVg~itlvD~d 66 (1018)
+++++|+|.|+ |.+|+.+++.|+..|. +++++|.+
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~-~V~~~~r~ 37 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGA-EVYGYSLD 37 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCC-EEEEEeCC
Confidence 45789999995 7799999999999996 67777754
No 422
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=80.55 E-value=1.4 Score=50.27 Aligned_cols=35 Identities=14% Similarity=0.289 Sum_probs=32.3
Q ss_pred HHHhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEe
Q 001747 426 KKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTIT 465 (1018)
Q Consensus 426 ~~l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~iv 465 (1018)
..|.+++|+|||+|-+|.-++++|...|+ ++|+|+
T Consensus 170 ~~l~~k~vLvIGaGem~~l~a~~L~~~g~-----~~i~v~ 204 (338)
T PRK00676 170 QKSKKASLLFIGYSEINRKVAYYLQRQGY-----SRITFC 204 (338)
T ss_pred CCccCCEEEEEcccHHHHHHHHHHHHcCC-----CEEEEE
Confidence 34889999999999999999999999999 789887
No 423
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=80.55 E-value=4.9 Score=50.61 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=33.7
Q ss_pred HHHHHHHhcCcEEEEc-cCcchHHHHHHHHhc-CcccCCCccEEEecCCc
Q 001747 422 AKLQKKLEDAKVFIVG-SGALGCEFLKNVALM-GVSCGNQGKLTITDDDV 469 (1018)
Q Consensus 422 ~~~q~~l~~~~v~vvG-~GgiG~e~lk~La~~-Gv~~~~~g~i~ivD~D~ 469 (1018)
+.......+++|+|.| +|-||+.+++.|... |. +++.+|...
T Consensus 307 ~~~~~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~------~V~~l~r~~ 350 (660)
T PRK08125 307 KPACSAKRRTRVLILGVNGFIGNHLTERLLRDDNY------EVYGLDIGS 350 (660)
T ss_pred cchhhhhcCCEEEEECCCchHHHHHHHHHHhCCCc------EEEEEeCCc
Confidence 3456677888999999 699999999999986 55 888887543
No 424
>PLN02427 UDP-apiose/xylose synthase
Probab=80.53 E-value=7.9 Score=45.10 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=29.3
Q ss_pred HHhhcCeEEEEc-CChHHHHHHHHHHHhcCCEEEEEeC
Q 001747 29 RRLFASNILVSG-MQGLGAEIAKNLILAGVKSVTLHDE 65 (1018)
Q Consensus 29 ~~L~~s~VlIiG-~gglG~eiaKnLvlaGVg~itlvD~ 65 (1018)
++++..+|||.| .|-+|+.+++.|+..|--+++.+|.
T Consensus 10 ~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r 47 (386)
T PLN02427 10 KPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDV 47 (386)
T ss_pred CcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEec
Confidence 356667899998 4889999999999985336777774
No 425
>PRK06125 short chain dehydrogenase; Provisional
Probab=80.49 E-value=4.1 Score=44.34 Aligned_cols=35 Identities=26% Similarity=0.452 Sum_probs=29.8
Q ss_pred HhcCcEEEEcc-CcchHHHHHHHHhcCcccCCCccEEEecCC
Q 001747 428 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 468 (1018)
Q Consensus 428 l~~~~v~vvG~-GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D 468 (1018)
+.+++++|.|+ ||||.++++.|+..|. ++++++.+
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~------~V~~~~r~ 40 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGC------HLHLVARD 40 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC------EEEEEeCC
Confidence 56789999996 7999999999999997 78887654
No 426
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=80.42 E-value=1.5 Score=51.76 Aligned_cols=32 Identities=25% Similarity=0.392 Sum_probs=29.3
Q ss_pred CcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCC
Q 001747 431 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 468 (1018)
Q Consensus 431 ~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D 468 (1018)
.+|+|||+|-.|||.|..|++.|+ +++|+++.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~------~V~LiE~r 32 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGV------PVILYEMR 32 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCC------cEEEEecc
Confidence 379999999999999999999998 89999864
No 427
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=80.38 E-value=2.4 Score=43.70 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=31.3
Q ss_pred HhhcCeEEEEcCChH-HHHHHHHHHHhcCCEEEEEeC
Q 001747 30 RLFASNILVSGMQGL-GAEIAKNLILAGVKSVTLHDE 65 (1018)
Q Consensus 30 ~L~~s~VlIiG~ggl-G~eiaKnLvlaGVg~itlvD~ 65 (1018)
.|.+++|+|+|.|.+ |..++++|...|+ ++++++.
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r 76 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHS 76 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEEC
Confidence 478999999999985 8889999999999 6999885
No 428
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=80.38 E-value=1.7 Score=49.54 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=29.3
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHhcCCE------EEEEeCC
Q 001747 34 SNILVSGM-QGLGAEIAKNLILAGVKS------VTLHDEG 66 (1018)
Q Consensus 34 s~VlIiG~-gglG~eiaKnLvlaGVg~------itlvD~d 66 (1018)
.||+|+|+ |.+|+.++-.|+..|+-. +.|+|..
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~ 40 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIP 40 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecC
Confidence 48999999 999999999999988755 9999864
No 429
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=80.38 E-value=2.2 Score=45.83 Aligned_cols=38 Identities=26% Similarity=0.347 Sum_probs=34.9
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCc
Q 001747 30 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 67 (1018)
Q Consensus 30 ~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~ 67 (1018)
.|+.++|+|.|.|.+|..+|+.|...|.+-+.+.|.+-
T Consensus 20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 20 SLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 57889999999999999999999999999999999654
No 430
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=80.33 E-value=11 Score=43.00 Aligned_cols=32 Identities=31% Similarity=0.423 Sum_probs=28.8
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCC
Q 001747 34 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 66 (1018)
Q Consensus 34 s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d 66 (1018)
.+|+|+|+|.+|+.+|..|..+|. +++++|.+
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~-~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGA-DVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCC-cEEEEecH
Confidence 479999999999999999999996 78888863
No 431
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=80.27 E-value=4.7 Score=48.00 Aligned_cols=109 Identities=13% Similarity=0.110 Sum_probs=73.1
Q ss_pred CcEEEEccCcch-HHHHHHHHhcC--cccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCCeE
Q 001747 431 AKVFIVGSGALG-CEFLKNVALMG--VSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNI 507 (1018)
Q Consensus 431 ~~v~vvG~GgiG-~e~lk~La~~G--v~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~~i 507 (1018)
.||.+||+|+.= .++++.|+..- . +.++|+++|-|. ..|.+ + ...+++.+.+.++.++|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l---~~~ei~L~DId~---~rl~~--------v----~~l~~~~~~~~g~~~~v 62 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDF---PLRELVLYDIDA---ERQEK--------V----AEAVKILFKENYPEIKF 62 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccC---CCCEEEEECCCH---HHHHH--------H----HHHHHHHHHhhCCCeEE
Confidence 379999999863 36677776552 2 228999999665 22221 1 12344445566677787
Q ss_pred EEEecccCCccccccccccccCccEEEEcc--cChhHHHHHHhhccccccceEecccCCcccce
Q 001747 508 EALQNRVGPETENVFDDTFWENITCVINAL--DNVNARLYVDQRCLYFQKPLLESGTLGAKCNT 569 (1018)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~dvVi~al--Dn~~ar~~v~~~c~~~~~pli~~g~~g~~g~~ 569 (1018)
+....+ ++-++++|.||+++ +..++|..-.+.+.++|+ +-.-|.|..|..
T Consensus 63 ~~Ttdr----------~eAl~gADfVi~~irvGg~~~r~~De~Ip~kyGi--~gqET~G~GG~~ 114 (437)
T cd05298 63 VYTTDP----------EEAFTDADFVFAQIRVGGYAMREQDEKIPLKHGV--VGQETCGPGGFA 114 (437)
T ss_pred EEECCH----------HHHhCCCCEEEEEeeeCCchHHHHHHhHHHHcCc--ceecCccHHHHH
Confidence 776432 35578999999986 456889888889999996 544677777743
No 432
>PRK07856 short chain dehydrogenase; Provisional
Probab=80.26 E-value=4.6 Score=43.76 Aligned_cols=78 Identities=14% Similarity=0.213 Sum_probs=47.7
Q ss_pred HhcCcEEEEc-cCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchH-HHHHHHHHHhhCCCC
Q 001747 428 LEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAK-STVAASAATSINPRL 505 (1018)
Q Consensus 428 l~~~~v~vvG-~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~K-a~va~~~l~~~np~~ 505 (1018)
+.+++++|.| .|+||.++++.|+..|. +++++|.+.-. ........+...|+..+- .+.+.+.+.+..+.+
T Consensus 4 ~~~k~~lItGas~gIG~~la~~l~~~g~------~v~~~~r~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 76 (252)
T PRK07856 4 LTGRVVLVTGGTRGIGAGIARAFLAAGA------TVVVCGRRAPE-TVDGRPAEFHAADVRDPDQVAALVDAIVERHGRL 76 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC------EEEEEeCChhh-hhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 5678899998 68999999999999997 78888875421 111223334445665532 233334444444445
Q ss_pred eEEEEec
Q 001747 506 NIEALQN 512 (1018)
Q Consensus 506 ~i~~~~~ 512 (1018)
.+..+..
T Consensus 77 d~vi~~a 83 (252)
T PRK07856 77 DVLVNNA 83 (252)
T ss_pred CEEEECC
Confidence 5444443
No 433
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=80.24 E-value=1.5 Score=52.01 Aligned_cols=36 Identities=33% Similarity=0.584 Sum_probs=32.4
Q ss_pred HhcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCC
Q 001747 428 LEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 468 (1018)
Q Consensus 428 l~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D 468 (1018)
+.+++|+|+|+|++|..+++.|...|+ .+++++|.+
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~-----~~V~v~~r~ 215 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGV-----RKITVANRT 215 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCC-----CeEEEEeCC
Confidence 678999999999999999999999998 789988654
No 434
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=80.23 E-value=3.7 Score=40.33 Aligned_cols=83 Identities=20% Similarity=0.139 Sum_probs=45.9
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEec
Q 001747 31 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 110 (1018)
Q Consensus 31 L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~~ 110 (1018)
-...+|.|||+|-+|..+++.|..+|. .+.-+- +|..+.++++.++-+...+..
T Consensus 8 ~~~l~I~iIGaGrVG~~La~aL~~ag~-~v~~v~----------------------srs~~sa~~a~~~~~~~~~~~--- 61 (127)
T PF10727_consen 8 AARLKIGIIGAGRVGTALARALARAGH-EVVGVY----------------------SRSPASAERAAAFIGAGAILD--- 61 (127)
T ss_dssp ----EEEEECTSCCCCHHHHHHHHTTS-EEEEES----------------------SCHH-HHHHHHC--TT--------
T ss_pred CCccEEEEECCCHHHHHHHHHHHHCCC-eEEEEE----------------------eCCcccccccccccccccccc---
Confidence 346789999999999999999999996 333221 133345566666656544432
Q ss_pred CCChhhccCCceEEEcccCHHHHHHHHHHHH
Q 001747 111 KLTKEQLSDFQAVVFTDISLDKAIEFDDFCH 141 (1018)
Q Consensus 111 ~l~~~~~~~~dvVI~~~~~~~~~~~ln~~c~ 141 (1018)
..+.+...|+|+++..+........+++.
T Consensus 62 --~~~~~~~aDlv~iavpDdaI~~va~~La~ 90 (127)
T PF10727_consen 62 --LEEILRDADLVFIAVPDDAIAEVAEQLAQ 90 (127)
T ss_dssp --TTGGGCC-SEEEE-S-CCHHHHHHHHHHC
T ss_pred --cccccccCCEEEEEechHHHHHHHHHHHH
Confidence 13467789999998765444444444443
No 435
>PRK05717 oxidoreductase; Validated
Probab=80.23 E-value=2.3 Score=46.20 Aligned_cols=36 Identities=14% Similarity=0.232 Sum_probs=30.4
Q ss_pred HHhcCcEEEEc-cCcchHHHHHHHHhcCcccCCCccEEEecCC
Q 001747 427 KLEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDD 468 (1018)
Q Consensus 427 ~l~~~~v~vvG-~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D 468 (1018)
.+.+++++|.| .|+||.++++.|+..|. +++++|.+
T Consensus 7 ~~~~k~vlItG~sg~IG~~~a~~l~~~g~------~v~~~~~~ 43 (255)
T PRK05717 7 GHNGRVALVTGAARGIGLGIAAWLIAEGW------QVVLADLD 43 (255)
T ss_pred ccCCCEEEEeCCcchHHHHHHHHHHHcCC------EEEEEcCC
Confidence 35567899998 69999999999999997 78888754
No 436
>PRK13529 malate dehydrogenase; Provisional
Probab=80.18 E-value=0.83 Score=55.07 Aligned_cols=117 Identities=14% Similarity=0.224 Sum_probs=66.2
Q ss_pred HHHhcCcEEEEccCcchHHHHHHHHh----cCcccC-CCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHh
Q 001747 426 KKLEDAKVFIVGSGALGCEFLKNVAL----MGVSCG-NQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATS 500 (1018)
Q Consensus 426 ~~l~~~~v~vvG~GgiG~e~lk~La~----~Gv~~~-~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~ 500 (1018)
.+|.+.||+++|||+-|.-+++.|+. .|+.-. -..+|.++|.+-+=... | .|+...|..-|..
T Consensus 291 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~--r------~~l~~~k~~fa~~---- 358 (563)
T PRK13529 291 EPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDD--M------PDLLDFQKPYARK---- 358 (563)
T ss_pred CChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCC--C------CcchHHHHHHhhh----
Confidence 56888999999999999999999987 587211 12589999987542221 1 1233444444332
Q ss_pred hCCCCeEEEEecccCCccccccccccccCc--cEEEEccc--ChhHHHHHHhhccccccceEecc
Q 001747 501 INPRLNIEALQNRVGPETENVFDDTFWENI--TCVINALD--NVNARLYVDQRCLYFQKPLLESG 561 (1018)
Q Consensus 501 ~np~~~i~~~~~~~~~~~~~~~~~~~~~~~--dvVi~alD--n~~ar~~v~~~c~~~~~pli~~g 561 (1018)
.++ +. ..... .....+ .+.++.. |+.|.+.- +.=+...|..++.....|+|.+-
T Consensus 359 ~~~-~~--~~~~~--~~~~~L--~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaL 416 (563)
T PRK13529 359 REE-LA--DWDTE--GDVISL--LEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCERPIIFPL 416 (563)
T ss_pred ccc-cc--ccccc--cCCCCH--HHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEEC
Confidence 111 10 00000 000011 1223444 77766553 34466777777777778888544
No 437
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=80.14 E-value=0.75 Score=55.64 Aligned_cols=109 Identities=15% Similarity=0.200 Sum_probs=66.6
Q ss_pred HHHhcCcEEEEccCcchHHHHHHHHhc-----CcccCC-CccEEEecCCcccccccCcccCcccccccchHHHHHHHHHH
Q 001747 426 KKLEDAKVFIVGSGALGCEFLKNVALM-----GVSCGN-QGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAT 499 (1018)
Q Consensus 426 ~~l~~~~v~vvG~GgiG~e~lk~La~~-----Gv~~~~-~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~ 499 (1018)
.+|.+.||+++|||+-|.-+++.|+.. |+.-.+ ..+|+++|.+-+-... | .+++-..|..-|..
T Consensus 317 ~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~--r-----~~~l~~~k~~fa~~--- 386 (581)
T PLN03129 317 GDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKS--R-----KDSLQPFKKPFAHD--- 386 (581)
T ss_pred CchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCC--C-----CccChHHHHHHHhh---
Confidence 578889999999999999999999984 552111 2589999987542221 1 11133445444442
Q ss_pred hhCCCCeEEEEecccCCccccccccccccC--ccEEEEccc--ChhHHHHHHhhccccccceEecc
Q 001747 500 SINPRLNIEALQNRVGPETENVFDDTFWEN--ITCVINALD--NVNARLYVDQRCLYFQKPLLESG 561 (1018)
Q Consensus 500 ~~np~~~i~~~~~~~~~~~~~~~~~~~~~~--~dvVi~alD--n~~ar~~v~~~c~~~~~pli~~g 561 (1018)
.+.. . .+ .+.++. .|++|.+.- +.=+...|..++..+..|+|.+-
T Consensus 387 --~~~~---------~----~L--~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaL 435 (581)
T PLN03129 387 --HEPG---------A----SL--LEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFAL 435 (581)
T ss_pred --cccC---------C----CH--HHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEEC
Confidence 1110 0 11 123344 677776653 44566778888877888888543
No 438
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=80.10 E-value=5.6 Score=44.73 Aligned_cols=108 Identities=19% Similarity=0.195 Sum_probs=63.8
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEecCCC-
Q 001747 35 NILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSKLT- 113 (1018)
Q Consensus 35 ~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~~~l~- 113 (1018)
+|.+||+|-+|..++.+|+.+|. .++++|.+.- ...+ . +.|...+....+.. -..++-+......-.
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~-~v~v~~~~~~-~~~~-----~---~~g~~~~~s~~~~~--~~advVi~~v~~~~~v 69 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGH-QLHVTTIGPV-ADEL-----L---SLGAVSVETARQVT--EASDIIFIMVPDTPQV 69 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCC-eEEEEeCCHh-HHHH-----H---HcCCeecCCHHHHH--hcCCEEEEeCCChHHH
Confidence 69999999999999999999996 7888886531 1111 1 12322222222211 133444444432210
Q ss_pred hh-------h---ccCCceEEEcc-cCHHHHHHHHHHHHhcCCCceeEEeeecc
Q 001747 114 KE-------Q---LSDFQAVVFTD-ISLDKAIEFDDFCHNHQPAISFIKAEVRG 156 (1018)
Q Consensus 114 ~~-------~---~~~~dvVI~~~-~~~~~~~~ln~~c~~~~~~i~fi~~~~~G 156 (1018)
.+ . +..=.+||.+. .+.....++.+.+.+++ +.|+.+-+.|
T Consensus 70 ~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G--~~~vdaPVsG 121 (292)
T PRK15059 70 EEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELG--GDYLDAPVSG 121 (292)
T ss_pred HHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcC--CCEEEecCCC
Confidence 11 1 12224666554 46777888899999998 8888765544
No 439
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=80.05 E-value=2.3 Score=46.79 Aligned_cols=116 Identities=12% Similarity=0.141 Sum_probs=67.2
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhcCC---EEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEe
Q 001747 33 ASNILVSGMQGLGAEIAKNLILAGVK---SVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 109 (1018)
Q Consensus 33 ~s~VlIiG~gglG~eiaKnLvlaGVg---~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~ 109 (1018)
..||.|||+|.+|..|++.|..-+.. -..+.|.+.-....+. +..++-...+.|....|++-|++-.
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~----------~~~~~~~~l~~ll~~~~DlVVE~A~ 71 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALA----------GRVALLDGLPGLLAWRPDLVVEAAG 71 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhh----------ccCcccCCHHHHhhcCCCEEEECCC
Confidence 35899999999999999997543332 2333444321111111 1112222244555666777776543
Q ss_pred cCC----Chhhcc-CCceEEEccc---CHHHHHHHHHHHHhcCCCceeEEeeeccee
Q 001747 110 SKL----TKEQLS-DFQAVVFTDI---SLDKAIEFDDFCHNHQPAISFIKAEVRGLF 158 (1018)
Q Consensus 110 ~~l----~~~~~~-~~dvVI~~~~---~~~~~~~ln~~c~~~~~~i~fi~~~~~G~~ 158 (1018)
... -+..++ +.|+||.+.. +.....++.+.|++++..+-+-++...|+-
T Consensus 72 ~~av~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipSGAigGlD 128 (267)
T PRK13301 72 QQAIAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAGAIAGLD 128 (267)
T ss_pred HHHHHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeChHHHhHH
Confidence 322 123455 7899998765 455777899999998744444444444443
No 440
>PRK12367 short chain dehydrogenase; Provisional
Probab=80.03 E-value=2 Score=46.93 Aligned_cols=39 Identities=26% Similarity=0.328 Sum_probs=34.2
Q ss_pred HHHHHhcCcEEEEcc-CcchHHHHHHHHhcCcccCCCccEEEecCC
Q 001747 424 LQKKLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 468 (1018)
Q Consensus 424 ~q~~l~~~~v~vvG~-GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D 468 (1018)
.|.++.+++++|.|+ ||||.++++.|+..|. ++++++.+
T Consensus 8 ~~~~l~~k~~lITGas~gIG~ala~~l~~~G~------~Vi~~~r~ 47 (245)
T PRK12367 8 AQSTWQGKRIGITGASGALGKALTKAFRAKGA------KVIGLTHS 47 (245)
T ss_pred hHHhhCCCEEEEEcCCcHHHHHHHHHHHHCCC------EEEEEECC
Confidence 578999999999985 8999999999999997 78877754
No 441
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=79.91 E-value=3.9 Score=46.57 Aligned_cols=37 Identities=22% Similarity=0.423 Sum_probs=29.1
Q ss_pred HhcCcEEEEc-cCcchHHHHHHHHhcCcccCCCccEEEecCC
Q 001747 428 LEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDD 468 (1018)
Q Consensus 428 l~~~~v~vvG-~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D 468 (1018)
+.+++|+|.| +|+||..+++.|+..|-+ .+++++|.+
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~----~~V~~~~r~ 39 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNP----KKIIIYSRD 39 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCC----cEEEEEcCC
Confidence 3567899998 589999999999998720 378888754
No 442
>PRK07831 short chain dehydrogenase; Provisional
Probab=79.90 E-value=8.2 Score=42.04 Aligned_cols=35 Identities=26% Similarity=0.419 Sum_probs=28.9
Q ss_pred HhhcCeEEEEcC-C-hHHHHHHHHHHHhcCCEEEEEeC
Q 001747 30 RLFASNILVSGM-Q-GLGAEIAKNLILAGVKSVTLHDE 65 (1018)
Q Consensus 30 ~L~~s~VlIiG~-g-glG~eiaKnLvlaGVg~itlvD~ 65 (1018)
.+.+.+++|.|. | |+|..+++.|+..|. ++.+.|.
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~-~V~~~~~ 50 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGA-RVVISDI 50 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCC-EEEEEeC
Confidence 455789999997 5 799999999999998 4777653
No 443
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=79.87 E-value=2.3 Score=48.67 Aligned_cols=38 Identities=16% Similarity=0.238 Sum_probs=34.6
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCc
Q 001747 30 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGT 67 (1018)
Q Consensus 30 ~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~ 67 (1018)
.|.+++|+|||+|-+|.-++++|...|++++++.....
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~ 208 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQ 208 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 47889999999999999999999999999999987543
No 444
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.87 E-value=5.6 Score=48.18 Aligned_cols=89 Identities=16% Similarity=0.141 Sum_probs=57.5
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEecC
Q 001747 32 FASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 111 (1018)
Q Consensus 32 ~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~~~ 111 (1018)
.+++|+|+|+|..|..+++-|...|. .+++.|... .+. +.+++. .+.+ ....
T Consensus 11 ~~~~v~V~G~G~sG~aa~~~L~~~G~-~v~~~D~~~-------------------~~~----~~l~~~--g~~~--~~~~ 62 (488)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALTRFGA-RPTVCDDDP-------------------DAL----RPHAER--GVAT--VSTS 62 (488)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEcCCH-------------------HHH----HHHHhC--CCEE--EcCc
Confidence 57899999999999999999999996 788888421 011 123332 2222 2222
Q ss_pred CChhhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEE
Q 001747 112 LTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIK 151 (1018)
Q Consensus 112 l~~~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~ 151 (1018)
...+.+.++|+||.+..-.. ...+-..+++.+ ||++.
T Consensus 63 ~~~~~l~~~D~VV~SpGi~~-~~p~~~~a~~~g--i~v~~ 99 (488)
T PRK03369 63 DAVQQIADYALVVTSPGFRP-TAPVLAAAAAAG--VPIWG 99 (488)
T ss_pred chHhHhhcCCEEEECCCCCC-CCHHHHHHHHCC--CcEee
Confidence 23456778999998765212 123345668888 88884
No 445
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=79.86 E-value=3.9 Score=45.98 Aligned_cols=31 Identities=19% Similarity=0.393 Sum_probs=27.2
Q ss_pred cEEEEc-cCcchHHHHHHHHhcCcccCCCccEEEecCC
Q 001747 432 KVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDD 468 (1018)
Q Consensus 432 ~v~vvG-~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D 468 (1018)
+|+|.| +|.||..+++.|+..|. +++++|..
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g~------~V~~~~r~ 33 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQGE------EVRVLVRP 33 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCCC------EEEEEEec
Confidence 689998 59999999999999996 78888764
No 446
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=79.85 E-value=2.2 Score=49.72 Aligned_cols=132 Identities=19% Similarity=0.197 Sum_probs=72.2
Q ss_pred hcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHH--HHHHHhhCCCCe
Q 001747 429 EDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVA--ASAATSINPRLN 506 (1018)
Q Consensus 429 ~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va--~~~l~~~np~~~ 506 (1018)
+..||.|.|+|.||-.+++.|...+. +...|+.|. |.-+...+..-+.|.. --|+.+.++- ......++ +-+
T Consensus 59 ~~~kVaInGfGrIGR~vlr~l~~~~~---~~~evvaIN-d~~~~~~~ayLl~yDS-~hG~f~~~v~~~~g~~l~v~-gk~ 132 (395)
T PLN03096 59 AKIKVAINGFGRIGRNFLRCWHGRKD---SPLDVVAIN-DTGGVKQASHLLKYDS-TLGTFDADVKPVGDDAISVD-GKV 132 (395)
T ss_pred cccEEEEECcCHHHHHHHHHHHhCCC---CCeEEEEEc-CCCCHHHHHHHHhhcc-cCCCcCCcEEEecCCEEEEC-CEE
Confidence 44699999999999999999887543 124666663 4555555543333333 2365544331 11111111 112
Q ss_pred EEEEecccCCccccccccccc--cCccEEEEcccChhHHHHHHhhccccc-cceEecccCCcccceEEEeCcc
Q 001747 507 IEALQNRVGPETENVFDDTFW--ENITCVINALDNVNARLYVDQRCLYFQ-KPLLESGTLGAKCNTQMVIPHL 576 (1018)
Q Consensus 507 i~~~~~~~~~~~~~~~~~~~~--~~~dvVi~alDn~~ar~~v~~~c~~~~-~pli~~g~~g~~g~~~v~ip~~ 576 (1018)
|.....+- + .+.-| .+.|+|+.|+.-..+|.+...... .| +-++-++. .++.+..++|+.
T Consensus 133 I~v~~~~d-p------~~~~w~~~gvDiVie~TG~f~s~~~a~~hl~-aGAkkV~iSap--~~~~~ptvV~GV 195 (395)
T PLN03096 133 IKVVSDRN-P------LNLPWGELGIDLVIEGTGVFVDREGAGKHIQ-AGAKKVLITAP--GKGDIPTYVVGV 195 (395)
T ss_pred EEEEEcCC-c------ccccccccCCCEEEECcchhhhHHHHHHHHH-CCCEEEEeCCC--CCCCCCeEeCcc
Confidence 22222110 1 11225 489999999999988876554433 34 33444444 444555666664
No 447
>PRK13018 cell division protein FtsZ; Provisional
Probab=79.82 E-value=9.9 Score=44.32 Aligned_cols=107 Identities=14% Similarity=0.231 Sum_probs=0.0
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhcCC--EEEEEeCCc--cCcccCCcccccCcC-----------ccCchHHHHHHH
Q 001747 30 RLFASNILVSGMQGLGAEIAKNLILAGVK--SVTLHDEGT--VELWDLSSNFVFSDN-----------DIGKNRALASVQ 94 (1018)
Q Consensus 30 ~L~~s~VlIiG~gglG~eiaKnLvlaGVg--~itlvD~d~--v~~~dL~~qf~~~~~-----------diGk~ka~a~~~ 94 (1018)
.....+|.|||+||-|+-++.+|...|+. .+..++.|. ..........++.++ ++|+.-++...+
T Consensus 25 ~~~~~~I~ViGvGGaG~N~v~~m~~~~~~~v~~iaiNTD~q~L~~~~a~~ki~iG~~~t~G~GaG~dp~~G~~aaee~~d 104 (378)
T PRK13018 25 DFGNPKIVVVGCGGAGNNTINRLYEIGIEGAETIAINTDAQHLAMIKADKKILIGKSLTRGLGAGGDPEVGRKAAEESRD 104 (378)
T ss_pred ccCCCeEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCHHHHhcCCCCcEEecCCccCCCCCCCCChHHHHHHHHHHHH
Q ss_pred HHHhhCCCcEEEEEecCCChhhccCCceEEEccc-----CHHHHHHHHHHHHhcCCCceeEEeeec
Q 001747 95 KLQELNNAVVLSTLTSKLTKEQLSDFQAVVFTDI-----SLDKAIEFDDFCHNHQPAISFIKAEVR 155 (1018)
Q Consensus 95 ~L~elNp~V~v~~~~~~l~~~~~~~~dvVI~~~~-----~~~~~~~ln~~c~~~~~~i~fi~~~~~ 155 (1018)
.+++. ++++|+|+++.. ..-....+.+++++.+ ++.+..-+.
T Consensus 105 ~I~~~-----------------le~~D~vfI~aGLGGGTGSGaapvIa~iake~g--~ltv~vVt~ 151 (378)
T PRK13018 105 EIKEV-----------------LKGADLVFVTAGMGGGTGTGAAPVVAEIAKEQG--ALVVGVVTK 151 (378)
T ss_pred HHHHH-----------------hcCCCEEEEEeeccCcchhhHHHHHHHHHHHcC--CCeEEEEEc
No 448
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=79.79 E-value=1.6 Score=49.20 Aligned_cols=32 Identities=28% Similarity=0.508 Sum_probs=29.3
Q ss_pred CcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCC
Q 001747 431 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 468 (1018)
Q Consensus 431 ~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D 468 (1018)
++|.|||+|-.|+-++..+|..|+ .+++.|..
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~------~V~l~D~~ 35 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGY------DVVLKDIS 35 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCC------ceEEEeCC
Confidence 589999999999999999999778 89999876
No 449
>PRK08251 short chain dehydrogenase; Provisional
Probab=79.79 E-value=9.6 Score=40.99 Aligned_cols=61 Identities=21% Similarity=0.329 Sum_probs=43.1
Q ss_pred cCeEEEEc-CChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEecC
Q 001747 33 ASNILVSG-MQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 111 (1018)
Q Consensus 33 ~s~VlIiG-~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~~~ 111 (1018)
+++|+|.| .||+|.++++.|+..|. ++++++.+. .+.+.+.+.+.+.+|...+.....+
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~D 61 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARRT-------------------DRLEELKAELLARYPGIKVAVAALD 61 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCH-------------------HHHHHHHHHHHhhCCCceEEEEEcC
Confidence 46788887 78999999999999995 777776531 2344555566666776666666554
Q ss_pred CC
Q 001747 112 LT 113 (1018)
Q Consensus 112 l~ 113 (1018)
++
T Consensus 62 ~~ 63 (248)
T PRK08251 62 VN 63 (248)
T ss_pred CC
Confidence 43
No 450
>PRK07814 short chain dehydrogenase; Provisional
Probab=79.73 E-value=3.7 Score=44.93 Aligned_cols=35 Identities=23% Similarity=0.368 Sum_probs=29.5
Q ss_pred HhcCcEEEEc-cCcchHHHHHHHHhcCcccCCCccEEEecCC
Q 001747 428 LEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDD 468 (1018)
Q Consensus 428 l~~~~v~vvG-~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D 468 (1018)
+.+++++|.| .|+||.++++.|+..|. +++++|.+
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~------~Vi~~~r~ 43 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGA------DVLIAART 43 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC------EEEEEeCC
Confidence 5678899998 56799999999999997 78888754
No 451
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=79.67 E-value=8.2 Score=42.56 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=26.8
Q ss_pred CeEEEEcC-ChHHHHHHHHHHH-hcCCEEEEEeCCc
Q 001747 34 SNILVSGM-QGLGAEIAKNLIL-AGVKSVTLHDEGT 67 (1018)
Q Consensus 34 s~VlIiG~-gglG~eiaKnLvl-aGVg~itlvD~d~ 67 (1018)
.+|.|+|+ |.+|..+++.+.. .++.-+.++|.+.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~ 37 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPG 37 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC
Confidence 48999999 9999999988875 4666666677653
No 452
>PRK09330 cell division protein FtsZ; Validated
Probab=79.61 E-value=6.2 Score=46.04 Aligned_cols=101 Identities=15% Similarity=0.197 Sum_probs=60.3
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhcCC--EEEEEeCCc--cCcccCCcccccCcC-----------ccCchHHHHHHHH
Q 001747 31 LFASNILVSGMQGLGAEIAKNLILAGVK--SVTLHDEGT--VELWDLSSNFVFSDN-----------DIGKNRALASVQK 95 (1018)
Q Consensus 31 L~~s~VlIiG~gglG~eiaKnLvlaGVg--~itlvD~d~--v~~~dL~~qf~~~~~-----------diGk~ka~a~~~~ 95 (1018)
....+|.|||+||-|+.++.+|+..|+. .+..++.|. ...+....-+.+.+. ++|+.-|+...+.
T Consensus 11 ~~~~~IkViGvGG~G~Nav~~m~~~~~~~v~fia~NTD~q~L~~~~a~~ki~lG~~~t~GlGaG~~pe~G~~aaee~~e~ 90 (384)
T PRK09330 11 NQGAVIKVIGVGGGGGNAVNRMIEEGIQGVEFIAANTDAQALLKSKAPVKIQLGEKLTRGLGAGANPEVGRKAAEESREE 90 (384)
T ss_pred ccCCeEEEEEECCcHHHHHHHHHHcCCCCceEEEEeCcHHHHhcCCCCeEEEcCCcccccCCCCCCHHHHHHHHHHHHHH
Confidence 3467899999999999999999999976 445556544 333333333343321 1222222333333
Q ss_pred HHhhCCCcEEEEEecCCChhhccCCceEEEccc------CHHHHHHHHHHHHhcCCCceeEE
Q 001747 96 LQELNNAVVLSTLTSKLTKEQLSDFQAVVFTDI------SLDKAIEFDDFCHNHQPAISFIK 151 (1018)
Q Consensus 96 L~elNp~V~v~~~~~~l~~~~~~~~dvVI~~~~------~~~~~~~ln~~c~~~~~~i~fi~ 151 (1018)
++ +.++++|+|+++.. +-... .+.+++++.+ ++.+.
T Consensus 91 I~-----------------~~l~~~D~vfI~AGmGGGTGTGaap-vIA~iake~g--~ltva 132 (384)
T PRK09330 91 IR-----------------EALEGADMVFITAGMGGGTGTGAAP-VVAEIAKELG--ILTVA 132 (384)
T ss_pred HH-----------------HHHcCCCEEEEEecCCCcccHHHHH-HHHHHHHHcC--CcEEE
Confidence 32 23456787776532 22333 6889999988 65543
No 453
>PLN00106 malate dehydrogenase
Probab=79.32 E-value=4.2 Score=46.45 Aligned_cols=74 Identities=14% Similarity=0.219 Sum_probs=0.0
Q ss_pred hcCeEEEEcC-ChHHHHHHHHHHHhcC-CEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEe
Q 001747 32 FASNILVSGM-QGLGAEIAKNLILAGV-KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLT 109 (1018)
Q Consensus 32 ~~s~VlIiG~-gglG~eiaKnLvlaGV-g~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~ 109 (1018)
...||+|+|+ |.+|+.++-.|+..|+ +.+.|+| +-. ++.-+.-|..-++.+.+....
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~D-------------------i~~--~~g~a~Dl~~~~~~~~i~~~~ 75 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYD-------------------IAN--TPGVAADVSHINTPAQVRGFL 75 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEe-------------------cCC--CCeeEchhhhCCcCceEEEEe
Q ss_pred cCCCh-hhccCCceEEEc
Q 001747 110 SKLTK-EQLSDFQAVVFT 126 (1018)
Q Consensus 110 ~~l~~-~~~~~~dvVI~~ 126 (1018)
..-+. +.+++.|+||.+
T Consensus 76 ~~~d~~~~l~~aDiVVit 93 (323)
T PLN00106 76 GDDQLGDALKGADLVIIP 93 (323)
T ss_pred CCCCHHHHcCCCCEEEEe
No 454
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=79.29 E-value=2.7 Score=53.20 Aligned_cols=165 Identities=15% Similarity=0.155 Sum_probs=85.6
Q ss_pred CcEEEEccCcchHHHHHHHH-hcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHH-HHHHHHh--hCCC--
Q 001747 431 AKVFIVGSGALGCEFLKNVA-LMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTV-AASAATS--INPR-- 504 (1018)
Q Consensus 431 ~~v~vvG~GgiG~e~lk~La-~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~v-a~~~l~~--~np~-- 504 (1018)
++|.|||+|..|+.++-.++ ..|+ .++++|.+.=. |.| +..+..- +.+.+.+ +.+.
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~------~V~l~d~~~~~---l~~---------~~~~~~~~l~~~~~~~~~~~~~~ 366 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGI------PVRIKDINPQG---INN---------ALKYAWKLLDKGVKRRHMTPAER 366 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCC------eEEEEeCCHHH---HHH---------HHHHHHHHHHHHHHcCCCCHHHH
Confidence 47999999999999999998 5898 99999976321 111 1111110 0011110 0000
Q ss_pred ----CeEEEEecccCCccccccccccccCccEEEEccc-ChhHHHHHHhhcccccc--ceEecccCCcccc-eEEEeCcc
Q 001747 505 ----LNIEALQNRVGPETENVFDDTFWENITCVINALD-NVNARLYVDQRCLYFQK--PLLESGTLGAKCN-TQMVIPHL 576 (1018)
Q Consensus 505 ----~~i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alD-n~~ar~~v~~~c~~~~~--pli~~g~~g~~g~-~~v~ip~~ 576 (1018)
-+|+... + + +-++++|+||.|+- +.+.++.+-......-. .++-+-|.+..-. ..-.+.+-
T Consensus 367 ~~~~~~i~~~~-----~----~--~~~~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p 435 (699)
T TIGR02440 367 DNQMALITGTT-----D----Y--RGFKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRP 435 (699)
T ss_pred HHHHcCeEEeC-----C----h--HHhccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCc
Confidence 0122111 0 1 23589999999974 44555543333322222 3444444443211 00001111
Q ss_pred cccccCCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhccChhhh
Q 001747 577 TENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEV 625 (1018)
Q Consensus 577 t~~y~~~~~~~~~~~p~Ct~~~~P~~~~h~i~wAk~~f~~~F~~~~~~~ 625 (1018)
..+.+.+--.|....|+.-+-.-|...+.+++++.+++.. .+..|-.+
T Consensus 436 ~r~~g~HffnP~~~~~lVEvv~g~~T~~~~~~~~~~~~~~-~gk~pv~v 483 (699)
T TIGR02440 436 ENVIGLHYFSPVEKMPLVEVIPHAGTSEQTIATTVALAKK-QGKTPIVV 483 (699)
T ss_pred ccEEEEecCCccccCceEEEeCCCCCCHHHHHHHHHHHHH-cCCeEEEE
Confidence 1222222222233446666777788889999999997765 46665444
No 455
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=79.25 E-value=11 Score=41.56 Aligned_cols=91 Identities=15% Similarity=0.179 Sum_probs=54.7
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccC----cCccCchHHHHHHHHHHhhCCCcEEEEEe
Q 001747 34 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFS----DNDIGKNRALASVQKLQELNNAVVLSTLT 109 (1018)
Q Consensus 34 s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~----~~diGk~ka~a~~~~L~elNp~V~v~~~~ 109 (1018)
.+|+|+|..|-|..+++.|...|..-+..+-.+ -+...+-. .--.|....+.+.+.+++.
T Consensus 1 m~ILvlGGT~egr~la~~L~~~g~~v~~s~~t~------~~~~~~~~~g~~~v~~g~l~~~~l~~~l~~~---------- 64 (256)
T TIGR00715 1 MTVLLMGGTVDSRAIAKGLIAQGIEILVTVTTS------EGKHLYPIHQALTVHTGALDPQELREFLKRH---------- 64 (256)
T ss_pred CeEEEEechHHHHHHHHHHHhCCCeEEEEEccC------CccccccccCCceEEECCCCHHHHHHHHHhc----------
Confidence 379999999999999999999996433332111 11111100 0001222222222222221
Q ss_pred cCCChhhccCCceEEEcccCHHHHH--HHHHHHHhcCCCceeEE
Q 001747 110 SKLTKEQLSDFQAVVFTDISLDKAI--EFDDFCHNHQPAISFIK 151 (1018)
Q Consensus 110 ~~l~~~~~~~~dvVI~~~~~~~~~~--~ln~~c~~~~~~i~fi~ 151 (1018)
+.++||+++.+++... .+.+.|++.+ ||++-
T Consensus 65 ---------~i~~VIDAtHPfA~~is~~a~~a~~~~~--ipylR 97 (256)
T TIGR00715 65 ---------SIDILVDATHPFAAQITTNATAVCKELG--IPYVR 97 (256)
T ss_pred ---------CCCEEEEcCCHHHHHHHHHHHHHHHHhC--CcEEE
Confidence 4689999999887544 6678999999 99985
No 456
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=79.21 E-value=1.8 Score=48.55 Aligned_cols=33 Identities=30% Similarity=0.380 Sum_probs=30.1
Q ss_pred CcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCc
Q 001747 431 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 469 (1018)
Q Consensus 431 ~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~ 469 (1018)
++|.|||+|.+|+.++..|+..|. .++++|.+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~------~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY------DVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC------eEEEEeCCH
Confidence 579999999999999999999998 899998764
No 457
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.20 E-value=1.8 Score=48.51 Aligned_cols=32 Identities=28% Similarity=0.460 Sum_probs=29.6
Q ss_pred CcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCC
Q 001747 431 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 468 (1018)
Q Consensus 431 ~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D 468 (1018)
++|.|||+|.+|..++..|+..|. .++++|.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~------~V~l~d~~ 36 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGY------DVLLNDVS 36 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC------eEEEEeCC
Confidence 689999999999999999999998 89999865
No 458
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=79.16 E-value=5.4 Score=44.99 Aligned_cols=92 Identities=11% Similarity=-0.002 Sum_probs=0.0
Q ss_pred hcCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCCeEE
Q 001747 429 EDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIE 508 (1018)
Q Consensus 429 ~~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~~i~ 508 (1018)
...+++|+|+|++|...+..+..+|+ ..+.++|.+.-...-..+-..+...+-
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~-----~~v~~~~~~~~rl~~a~~~~~i~~~~~---------------------- 196 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGG-----SPPAVWETNPRRRDGATGYEVLDPEKD---------------------- 196 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC-----ceEEEeCCCHHHHHhhhhccccChhhc----------------------
Q ss_pred EEecccCCccccccccccccCccEEEEcccChhHHHHHHhhccccccceEecccCC
Q 001747 509 ALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLG 564 (1018)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~~~pli~~g~~g 564 (1018)
.-..+|+||+|+.+..+....-+.....++-++-+...+
T Consensus 197 -----------------~~~g~Dvvid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~ 235 (308)
T TIGR01202 197 -----------------PRRDYRAIYDASGDPSLIDTLVRRLAKGGEIVLAGFYTE 235 (308)
T ss_pred -----------------cCCCCCEEEECCCCHHHHHHHHHhhhcCcEEEEEeecCC
No 459
>PRK08374 homoserine dehydrogenase; Provisional
Probab=79.16 E-value=6.1 Score=45.42 Aligned_cols=109 Identities=18% Similarity=0.192 Sum_probs=56.9
Q ss_pred CcEEEEccCcchHHHHHHHHh--------cCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhC
Q 001747 431 AKVFIVGSGALGCEFLKNVAL--------MGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSIN 502 (1018)
Q Consensus 431 ~~v~vvG~GgiG~e~lk~La~--------~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~n 502 (1018)
.+|.|+|+|.+|..+++.|.. +|+.. .-+.|.|.+ -.+|.++.+.-++. .+...+..
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l---~VvaV~ds~---------~~~~~~~Gid~~~l---~~~~~~~~ 67 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVEL---KVVSITDTS---------GTIWLPEDIDLREA---KEVKENFG 67 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCE---EEEEEEeCC---------ccccCCCCCChHHH---HHhhhccC
Confidence 589999999999999999877 67500 112333422 12333333332222 22111111
Q ss_pred CCCeEEEEecccCCccccccccccc--cCccEEEEcccChhHHHHHHhhccccccceEec
Q 001747 503 PRLNIEALQNRVGPETENVFDDTFW--ENITCVINALDNVNARLYVDQRCLYFQKPLLES 560 (1018)
Q Consensus 503 p~~~i~~~~~~~~~~~~~~~~~~~~--~~~dvVi~alDn~~ar~~v~~~c~~~~~pli~~ 560 (1018)
.+..+.......... .++++ ...|+||+++....++.++. .|...++++|.+
T Consensus 68 ---~~~~~~~~~~~~~~~--~~ell~~~~~DVvVd~t~~~~a~~~~~-~al~~G~~VVta 121 (336)
T PRK08374 68 ---KLSNWGNDYEVYNFS--PEEIVEEIDADIVVDVTNDKNAHEWHL-EALKEGKSVVTS 121 (336)
T ss_pred ---chhhccccccccCCC--HHHHHhcCCCCEEEECCCcHHHHHHHH-HHHhhCCcEEEC
Confidence 111111100000000 02333 36899999997666665555 667789999943
No 460
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=79.15 E-value=4.2 Score=46.95 Aligned_cols=98 Identities=20% Similarity=0.232 Sum_probs=57.2
Q ss_pred CcEEEEcc-CcchHHHHHHHHhcCcccCCCccEE-EecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCCeEE
Q 001747 431 AKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLT-ITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIE 508 (1018)
Q Consensus 431 ~~v~vvG~-GgiG~e~lk~La~~Gv~~~~~g~i~-ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~~i~ 508 (1018)
.||+|+|| |.+|.++++.|...-. -+++ +++.+. ..|+. +...+|.+...
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~-----~el~~l~~s~~---------------sagk~--------~~~~~~~l~~~ 52 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPE-----VEITYLVSSRE---------------SAGKP--------VSEVHPHLRGL 52 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCC-----ceEEEEeccch---------------hcCCC--------hHHhCcccccc
Confidence 37999998 9999999999996522 3555 545431 11211 11112322110
Q ss_pred EEecccCCccccccccccccCccEEEEcccChhHHHHHHhhccccccceEeccc
Q 001747 509 ALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGT 562 (1018)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~~~pli~~g~ 562 (1018)
. ...+.+.+. +++.++.|+|+.|+.+-.++.++... ...++.+||.+.
T Consensus 53 ~-~~~~~~~~~----~~~~~~~DvVf~alP~~~s~~~~~~~-~~~G~~VIDlS~ 100 (346)
T TIGR01850 53 V-DLNLEPIDE----EEIAEDADVVFLALPHGVSAELAPEL-LAAGVKVIDLSA 100 (346)
T ss_pred C-CceeecCCH----HHhhcCCCEEEECCCchHHHHHHHHH-HhCCCEEEeCCh
Confidence 0 001110000 23345899999999999888888865 446788887553
No 461
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=79.15 E-value=2.7 Score=46.75 Aligned_cols=33 Identities=21% Similarity=0.252 Sum_probs=30.7
Q ss_pred cCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeC
Q 001747 33 ASNILVSGMQGLGAEIAKNLILAGVKSVTLHDE 65 (1018)
Q Consensus 33 ~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~ 65 (1018)
+.+|+|+|+||.+..++-.|...|+++++|++.
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR 154 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVAR 154 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence 358999999999999999999999999999985
No 462
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=79.12 E-value=2.5 Score=47.97 Aligned_cols=38 Identities=26% Similarity=0.285 Sum_probs=33.7
Q ss_pred HHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeC
Q 001747 27 TMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDE 65 (1018)
Q Consensus 27 ~q~~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~ 65 (1018)
....|++++|.|||+|.+|..+|+||..+|+ ++++.|.
T Consensus 10 ~~~~LkgKtVGIIG~GsIG~amA~nL~d~G~-~ViV~~r 47 (335)
T PRK13403 10 NVELLQGKTVAVIGYGSQGHAQAQNLRDSGV-EVVVGVR 47 (335)
T ss_pred ChhhhCcCEEEEEeEcHHHHHHHHHHHHCcC-EEEEEEC
Confidence 3578999999999999999999999999999 6777763
No 463
>PRK08507 prephenate dehydrogenase; Validated
Probab=79.10 E-value=8.5 Score=42.74 Aligned_cols=31 Identities=23% Similarity=0.236 Sum_probs=27.1
Q ss_pred eEEEEcCChHHHHHHHHHHHhcCC-EEEEEeC
Q 001747 35 NILVSGMQGLGAEIAKNLILAGVK-SVTLHDE 65 (1018)
Q Consensus 35 ~VlIiG~gglG~eiaKnLvlaGVg-~itlvD~ 65 (1018)
+|.|||+|.+|..++..|...|.. .++.+|.
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~ 33 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDH 33 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 699999999999999999999973 6777764
No 464
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=79.05 E-value=4.1 Score=48.88 Aligned_cols=88 Identities=22% Similarity=0.260 Sum_probs=57.4
Q ss_pred hcCeEEEEcCChHHHH-HHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEec
Q 001747 32 FASNILVSGMQGLGAE-IAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 110 (1018)
Q Consensus 32 ~~s~VlIiG~gglG~e-iaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~~ 110 (1018)
..++|+|+|+|+.|.. +|+.|...|. .+++.|.... .. .+.|.+. .+.+.. .
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~-~V~~~D~~~~------------------~~----~~~l~~~--gi~~~~--~ 58 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGY-KVSGSDLKES------------------AV----TQRLLEL--GAIIFI--G 58 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCC-eEEEECCCCC------------------hH----HHHHHHC--CCEEeC--C
Confidence 4578999999999999 7999999998 5788775331 01 1234443 344432 2
Q ss_pred CCChhhccCCceEEEccc-CHHHHHHHHHHHHhcCCCceeEE
Q 001747 111 KLTKEQLSDFQAVVFTDI-SLDKAIEFDDFCHNHQPAISFIK 151 (1018)
Q Consensus 111 ~l~~~~~~~~dvVI~~~~-~~~~~~~ln~~c~~~~~~i~fi~ 151 (1018)
..++.+.++|+||.+.. +.. . ..-..+++++ +|++.
T Consensus 59 -~~~~~~~~~d~vv~spgi~~~-~-~~~~~a~~~~--i~i~~ 95 (461)
T PRK00421 59 -HDAENIKDADVVVYSSAIPDD-N-PELVAARELG--IPVVR 95 (461)
T ss_pred -CCHHHCCCCCEEEECCCCCCC-C-HHHHHHHHCC--CcEEe
Confidence 24556778999998764 222 1 2234567788 88875
No 465
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=79.04 E-value=6.7 Score=42.05 Aligned_cols=36 Identities=33% Similarity=0.418 Sum_probs=30.1
Q ss_pred HhhcCeEEEEc-CChHHHHHHHHHHHhcCCEEEEEeCC
Q 001747 30 RLFASNILVSG-MQGLGAEIAKNLILAGVKSVTLHDEG 66 (1018)
Q Consensus 30 ~L~~s~VlIiG-~gglG~eiaKnLvlaGVg~itlvD~d 66 (1018)
.+++++|+|.| .|++|..+++.|...|. ++++++.+
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~ 39 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDIC 39 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence 45678999998 68999999999999997 67777653
No 466
>PLN02688 pyrroline-5-carboxylate reductase
Probab=79.02 E-value=11 Score=41.60 Aligned_cols=77 Identities=16% Similarity=0.250 Sum_probs=46.8
Q ss_pred eEEEEcCChHHHHHHHHHHHhcC---CEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEecC
Q 001747 35 NILVSGMQGLGAEIAKNLILAGV---KSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTSK 111 (1018)
Q Consensus 35 ~VlIiG~gglG~eiaKnLvlaGV---g~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~~~ 111 (1018)
+|.+||+|.+|..++++|..+|. ..++++++. ...|+ +.+.+. .+.+. . +
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r------------------~~~~~----~~~~~~--g~~~~--~-~ 54 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDS------------------NPARR----DVFQSL--GVKTA--A-S 54 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCC------------------CHHHH----HHHHHc--CCEEe--C-C
Confidence 69999999999999999999985 255555210 11122 223332 23221 1 1
Q ss_pred CChhhccCCceEEEcccCHHHHHHHHHH
Q 001747 112 LTKEQLSDFQAVVFTDISLDKAIEFDDF 139 (1018)
Q Consensus 112 l~~~~~~~~dvVI~~~~~~~~~~~ln~~ 139 (1018)
..+..++.|+||.|..+......+.++
T Consensus 55 -~~e~~~~aDvVil~v~~~~~~~vl~~l 81 (266)
T PLN02688 55 -NTEVVKSSDVIILAVKPQVVKDVLTEL 81 (266)
T ss_pred -hHHHHhcCCEEEEEECcHHHHHHHHHH
Confidence 224566889999998655544444444
No 467
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=78.95 E-value=3.3 Score=52.49 Aligned_cols=33 Identities=18% Similarity=0.337 Sum_probs=30.4
Q ss_pred CcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCc
Q 001747 431 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 469 (1018)
Q Consensus 431 ~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~ 469 (1018)
++|.|||+|..|+.++..++..|+ .++++|.+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~------~V~l~d~~~ 346 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGT------PIVMKDINQ 346 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCC------eEEEEeCCH
Confidence 479999999999999999999999 999999764
No 468
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=78.88 E-value=6.9 Score=46.57 Aligned_cols=123 Identities=15% Similarity=0.175 Sum_probs=69.5
Q ss_pred hhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEEec
Q 001747 31 LFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTLTS 110 (1018)
Q Consensus 31 L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~~~ 110 (1018)
+.+++|+|+|.|+.|...++-|...|. +++..|...-. .. ...|. ..+.+. ..
T Consensus 4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~-~v~~~D~~~~~-----------------~~----~~~l~---~g~~~~--~~ 56 (438)
T PRK03806 4 YQGKKVVIIGLGLTGLSCVDFFLARGV-TPRVIDTRITP-----------------PG----LDKLP---ENVERH--TG 56 (438)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCCCCc-----------------hh----HHHHh---cCCEEE--eC
Confidence 457899999999999999998888897 78888854210 00 11232 133442 23
Q ss_pred CCChhhccCCceEEEcccCHHHHHHHHHHHHhcCCCceeEEeeecceeEEEEeecCCceEEecCCCCCCcceeeeee
Q 001747 111 KLTKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFGPEFTVVDVDGEDPHTGIIASI 187 (1018)
Q Consensus 111 ~l~~~~~~~~dvVI~~~~~~~~~~~ln~~c~~~~~~i~fi~~~~~G~~G~vf~d~g~~~~v~d~~ge~p~~~~i~~i 187 (1018)
..++..+..+|+||.+..-... ...-..+++.+ +|++. .. -+.+.++ +. .-..|.=++|....+.++.+|
T Consensus 57 ~~~~~~~~~~d~vv~spgi~~~-~~~~~~a~~~g--~~v~~-~~-el~~~~~-~~-~~I~VTGTnGKTTTt~ll~~i 126 (438)
T PRK03806 57 SLNDEWLLAADLIVASPGIALA-HPSLSAAADAG--IEIVG-DI-ELFCREA-QA-PIVAITGSNGKSTVTTLVGEM 126 (438)
T ss_pred CCCHHHhcCCCEEEECCCCCCC-CHHHHHHHHCC--CeEEE-HH-HHHhhhc-CC-CEEEEeCCCCHHHHHHHHHHH
Confidence 3344556788999887642222 22344568889 88554 21 1222222 11 123344456665544444444
No 469
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=78.88 E-value=1.8 Score=47.34 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=35.9
Q ss_pred HHhhcCeEEEEcCChHHHHHHHHHHHhcCC----------EEEEEeCCc
Q 001747 29 RRLFASNILVSGMQGLGAEIAKNLILAGVK----------SVTLHDEGT 67 (1018)
Q Consensus 29 ~~L~~s~VlIiG~gglG~eiaKnLvlaGVg----------~itlvD~d~ 67 (1018)
++|++.||+++|+|+.|.-|++.|+.+|++ +|.++|..-
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~G 69 (254)
T cd00762 21 KKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKG 69 (254)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCC
Confidence 578999999999999999999999999998 899999754
No 470
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.84 E-value=7.6 Score=41.71 Aligned_cols=74 Identities=19% Similarity=0.315 Sum_probs=0.0
Q ss_pred HhhcCeEEEEcC-ChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEEE
Q 001747 30 RLFASNILVSGM-QGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLSTL 108 (1018)
Q Consensus 30 ~L~~s~VlIiG~-gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~~ 108 (1018)
++++++|+|.|+ |++|.++++.|+..|.. +++++...- +.+.+...+.. ..++...
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~-V~~~~r~~~-------------------~~~~~~~~~~~---~~~~~~~ 58 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAAEGAR-VVVTDRNEE-------------------AAERVAAEILA---GGRAIAV 58 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHH-------------------HHHHHHHHHhc---CCeEEEE
Q ss_pred ecCCCh------------hhccCCceEEEc
Q 001747 109 TSKLTK------------EQLSDFQAVVFT 126 (1018)
Q Consensus 109 ~~~l~~------------~~~~~~dvVI~~ 126 (1018)
..++.+ +.+...|+||.+
T Consensus 59 ~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ 88 (251)
T PRK07231 59 AADVSDEADVEAAVAAALERFGSVDILVNN 88 (251)
T ss_pred ECCCCCHHHHHHHHHHHHHHhCCCCEEEEC
No 471
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=78.83 E-value=3.8 Score=46.09 Aligned_cols=77 Identities=12% Similarity=0.186 Sum_probs=56.6
Q ss_pred HHhcCcEEEEc-cCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCC
Q 001747 427 KLEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRL 505 (1018)
Q Consensus 427 ~l~~~~v~vvG-~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~ 505 (1018)
.+.+++|+||| .|.+|..++.+|...|. .+++.+.-+- + +
T Consensus 155 ~~~Gk~V~viGrs~~mG~PmA~~L~~~g~------tVtv~~~rT~--------------~--------l----------- 195 (296)
T PRK14188 155 DLSGLNAVVIGRSNLVGKPMAQLLLAANA------TVTIAHSRTR--------------D--------L----------- 195 (296)
T ss_pred CCCCCEEEEEcCCcchHHHHHHHHHhCCC------EEEEECCCCC--------------C--------H-----------
Confidence 47789999999 99999999999999997 7888742211 0 0
Q ss_pred eEEEEecccCCccccccccccccCccEEEEcccChhHHHHHHhhccccccceEecccC
Q 001747 506 NIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTL 563 (1018)
Q Consensus 506 ~i~~~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~~~~~pli~~g~~ 563 (1018)
.+..++.|+||.|+.+.. .+.......+.-+|+.|+.
T Consensus 196 ------------------~e~~~~ADIVIsavg~~~---~v~~~~lk~GavVIDvGin 232 (296)
T PRK14188 196 ------------------PAVCRRADILVAAVGRPE---MVKGDWIKPGATVIDVGIN 232 (296)
T ss_pred ------------------HHHHhcCCEEEEecCChh---hcchheecCCCEEEEcCCc
Confidence 123467899999998865 4555556667777777764
No 472
>PRK00811 spermidine synthase; Provisional
Probab=78.78 E-value=3.9 Score=45.83 Aligned_cols=93 Identities=17% Similarity=0.170 Sum_probs=51.2
Q ss_pred chhhhhhhhhhhccCHHHHHHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHH
Q 001747 10 DIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRA 89 (1018)
Q Consensus 10 ~~~~~~YdRQi~l~G~~~q~~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka 89 (1018)
+.++-.|.+.+.-...-.. -...+||++|+|+ |.-...-|-..|+.+++.+|-|.. -+
T Consensus 56 ~~de~~Y~e~l~h~~~~~~--~~p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEid~~-------------------vv 113 (283)
T PRK00811 56 ERDEFIYHEMMTHVPLFAH--PNPKRVLIIGGGD-GGTLREVLKHPSVEKITLVEIDER-------------------VV 113 (283)
T ss_pred CcchhhHHHHhhhHHHhhC--CCCCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeCCHH-------------------HH
Confidence 3455567765543332221 1467999999874 332222233468999999986542 34
Q ss_pred HHHHHHHHhh------CCCcEEEEEecCCCh---hhccCCceEEEc
Q 001747 90 LASVQKLQEL------NNAVVLSTLTSKLTK---EQLSDFQAVVFT 126 (1018)
Q Consensus 90 ~a~~~~L~el------Np~V~v~~~~~~l~~---~~~~~~dvVI~~ 126 (1018)
+.+.+.+.++ +|.|++ +..+... ..-..||+||+.
T Consensus 114 ~~a~~~~~~~~~~~~~d~rv~v--~~~Da~~~l~~~~~~yDvIi~D 157 (283)
T PRK00811 114 EVCRKYLPEIAGGAYDDPRVEL--VIGDGIKFVAETENSFDVIIVD 157 (283)
T ss_pred HHHHHHhHHhccccccCCceEE--EECchHHHHhhCCCcccEEEEC
Confidence 4555566543 344444 4433211 112479999874
No 473
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=78.73 E-value=1.8 Score=50.75 Aligned_cols=33 Identities=21% Similarity=0.380 Sum_probs=30.1
Q ss_pred CcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCc
Q 001747 431 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDV 469 (1018)
Q Consensus 431 ~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~ 469 (1018)
++|+|||+|-+|+.+|..|++.|. +++|+|.+.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~------~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGY------QVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC------eEEEEeCCC
Confidence 489999999999999999999997 899998664
No 474
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=78.73 E-value=3.8 Score=45.70 Aligned_cols=93 Identities=5% Similarity=0.049 Sum_probs=54.7
Q ss_pred cCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCCeEEE
Q 001747 430 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEA 509 (1018)
Q Consensus 430 ~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~~i~~ 509 (1018)
..+|.+||+|.+|..+++.|...|+. ....++++|. .. ..+++.+++ .. .+++.
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~--~~~~v~v~~r----------~~--------~~~~~~l~~----~~-g~~~~- 56 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVV--KGEQITVSNR----------SN--------ETRLQELHQ----KY-GVKGT- 56 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCC--CcceEEEECC----------CC--------HHHHHHHHH----hc-CceEe-
Confidence 45899999999999999999999831 1124444431 10 012222222 11 22211
Q ss_pred EecccCCccccccccccccCccEEEEcccChhHHHHHHhhcc--ccccceEe
Q 001747 510 LQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCL--YFQKPLLE 559 (1018)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~~v~~~c~--~~~~pli~ 559 (1018)
.+. .+..++.|+||-|+-....+..+..... ..+..+|+
T Consensus 57 ------~~~-----~e~~~~aDvVilav~p~~~~~vl~~l~~~~~~~~liIs 97 (279)
T PRK07679 57 ------HNK-----KELLTDANILFLAMKPKDVAEALIPFKEYIHNNQLIIS 97 (279)
T ss_pred ------CCH-----HHHHhcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEE
Confidence 111 1234678999999998888887776653 23455665
No 475
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=78.71 E-value=12 Score=41.74 Aligned_cols=31 Identities=23% Similarity=0.342 Sum_probs=25.3
Q ss_pred eEEEEcC-ChHHHHHHHHHHHhcC-CEEEEEeC
Q 001747 35 NILVSGM-QGLGAEIAKNLILAGV-KSVTLHDE 65 (1018)
Q Consensus 35 ~VlIiG~-gglG~eiaKnLvlaGV-g~itlvD~ 65 (1018)
+|+|.|. |.+|..+++.|...|- -+++++|.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~ 33 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDK 33 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecC
Confidence 5899985 8999999999999883 46777763
No 476
>PRK08643 acetoin reductase; Validated
Probab=78.71 E-value=4.9 Score=43.57 Aligned_cols=33 Identities=21% Similarity=0.390 Sum_probs=28.0
Q ss_pred cCcEEEEc-cCcchHHHHHHHHhcCcccCCCccEEEecCC
Q 001747 430 DAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDD 468 (1018)
Q Consensus 430 ~~~v~vvG-~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D 468 (1018)
+++++|.| .|+||.++++.|+..|. +++++|.+
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~------~v~~~~r~ 35 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGF------KVAIVDYN 35 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC------EEEEEeCC
Confidence 46788887 88999999999999997 78888754
No 477
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=78.62 E-value=5.2 Score=43.74 Aligned_cols=36 Identities=14% Similarity=0.301 Sum_probs=30.8
Q ss_pred HHhcCcEEEEcc---CcchHHHHHHHHhcCcccCCCccEEEecCC
Q 001747 427 KLEDAKVFIVGS---GALGCEFLKNVALMGVSCGNQGKLTITDDD 468 (1018)
Q Consensus 427 ~l~~~~v~vvG~---GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D 468 (1018)
++.+++++|.|+ +|||.++++.|+..|. +++++|.+
T Consensus 4 ~~~~k~~lItGa~~s~GIG~a~a~~la~~G~------~v~l~~r~ 42 (256)
T PRK07889 4 LLEGKRILVTGVITDSSIAFHVARVAQEQGA------EVVLTGFG 42 (256)
T ss_pred cccCCEEEEeCCCCcchHHHHHHHHHHHCCC------EEEEecCc
Confidence 367789999996 7999999999999997 78888754
No 478
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.53 E-value=4 Score=44.35 Aligned_cols=35 Identities=17% Similarity=0.322 Sum_probs=29.4
Q ss_pred HhcCcEEEEccC---cchHHHHHHHHhcCcccCCCccEEEecCC
Q 001747 428 LEDAKVFIVGSG---ALGCEFLKNVALMGVSCGNQGKLTITDDD 468 (1018)
Q Consensus 428 l~~~~v~vvG~G---giG~e~lk~La~~Gv~~~~~g~i~ivD~D 468 (1018)
|++++|+|.|++ |||..+++.|+..|. ++++++..
T Consensus 3 l~~k~vlItGas~~~giG~~la~~l~~~G~------~vi~~~r~ 40 (256)
T PRK12748 3 LMKKIALVTGASRLNGIGAAVCRRLAAKGI------DIFFTYWS 40 (256)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHcCC------cEEEEcCC
Confidence 466789999984 799999999999997 78887653
No 479
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=78.45 E-value=8.1 Score=46.94 Aligned_cols=104 Identities=22% Similarity=0.211 Sum_probs=0.0
Q ss_pred CeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHHHHhhCCCcEEEE------
Q 001747 34 SNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQKLQELNNAVVLST------ 107 (1018)
Q Consensus 34 s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~L~elNp~V~v~~------ 107 (1018)
++|.|||+|..|+.||.+|+.+|. .++++| +...+.+.+.+++++.-....-..
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~-~V~l~d-------------------~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~ 65 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGH-QVLLYD-------------------IRAEALARAIAGIEARLNSLVTKGKLTAEE 65 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCC-eEEEEe-------------------CCHHHHHHHHHHHHHHHHHHHhcCCCCHHH
Q ss_pred -------EecCCChhhccCCceEEEccc-CHHHHHHHHHHHHhcCCCceeEEeeecce
Q 001747 108 -------LTSKLTKEQLSDFQAVVFTDI-SLDKAIEFDDFCHNHQPAISFIKAEVRGL 157 (1018)
Q Consensus 108 -------~~~~l~~~~~~~~dvVI~~~~-~~~~~~~ln~~c~~~~~~i~fi~~~~~G~ 157 (1018)
.....+.+-+.+.|+||-+.. +.+....+-.-....-++-.++.+.+..+
T Consensus 66 ~~~~~~~i~~~~~~~~l~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl 123 (503)
T TIGR02279 66 CERTLKRLIPVTDLHALADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSL 123 (503)
T ss_pred HHHHHhccEEeCCHHHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCC
No 480
>PRK06181 short chain dehydrogenase; Provisional
Probab=78.41 E-value=4.4 Score=44.12 Aligned_cols=31 Identities=23% Similarity=0.395 Sum_probs=26.6
Q ss_pred CcEEEEcc-CcchHHHHHHHHhcCcccCCCccEEEecC
Q 001747 431 AKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDD 467 (1018)
Q Consensus 431 ~~v~vvG~-GgiG~e~lk~La~~Gv~~~~~g~i~ivD~ 467 (1018)
++|+|.|+ |+||.++++.|+..|. +++++|.
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~------~Vi~~~r 33 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA------QLVLAAR 33 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC------EEEEEeC
Confidence 57899986 9999999999999886 7887764
No 481
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=78.21 E-value=5.7 Score=45.80 Aligned_cols=35 Identities=14% Similarity=0.003 Sum_probs=27.0
Q ss_pred cccCccEEEEcccChhHHHHHHhhccccccceEecc
Q 001747 526 FWENITCVINALDNVNARLYVDQRCLYFQKPLLESG 561 (1018)
Q Consensus 526 ~~~~~dvVi~alDn~~ar~~v~~~c~~~~~pli~~g 561 (1018)
.+++.|+|+.|+.+..+..++.. |...++++||.+
T Consensus 65 ~~~~vD~Vf~alP~~~~~~~v~~-a~~aG~~VID~S 99 (343)
T PRK00436 65 ILAGADVVFLALPHGVSMDLAPQ-LLEAGVKVIDLS 99 (343)
T ss_pred HhcCCCEEEECCCcHHHHHHHHH-HHhCCCEEEECC
Confidence 34679999999999877777665 456789999744
No 482
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=78.19 E-value=4.5 Score=49.79 Aligned_cols=80 Identities=13% Similarity=0.183 Sum_probs=53.0
Q ss_pred cCcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCCeEEE
Q 001747 430 DAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEA 509 (1018)
Q Consensus 430 ~~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~~i~~ 509 (1018)
+-+++|+|+|.+|.++++.|...|. .++++|.|.- |++.+ ++. .+..
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~------~vvvId~d~~-------------------~~~~~----~~~----g~~~ 463 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGI------PLVVIETSRT-------------------RVDEL----RER----GIRA 463 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCC------CEEEEECCHH-------------------HHHHH----HHC----CCeE
Confidence 5689999999999999999999998 8999997753 22222 221 2334
Q ss_pred EecccCCccccccccccccCccEEEEcccChhHHH
Q 001747 510 LQNRVGPETENVFDDTFWENITCVINALDNVNARL 544 (1018)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~dvVi~alDn~~ar~ 544 (1018)
+..+.++ +..+...-.+++|.|+.++++.....
T Consensus 464 i~GD~~~--~~~L~~a~i~~a~~viv~~~~~~~~~ 496 (558)
T PRK10669 464 VLGNAAN--EEIMQLAHLDCARWLLLTIPNGYEAG 496 (558)
T ss_pred EEcCCCC--HHHHHhcCccccCEEEEEcCChHHHH
Confidence 4444332 22233344578998888877665443
No 483
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=78.16 E-value=16 Score=41.74 Aligned_cols=32 Identities=19% Similarity=0.231 Sum_probs=25.6
Q ss_pred CeEEEEcC-ChHHHHHHHHHHHhcCCEEEEEeC
Q 001747 34 SNILVSGM-QGLGAEIAKNLILAGVKSVTLHDE 65 (1018)
Q Consensus 34 s~VlIiG~-gglG~eiaKnLvlaGVg~itlvD~ 65 (1018)
.+|||.|+ |-+|+.+++.|...|=-+++.+|.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r 34 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDM 34 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeC
Confidence 37999997 899999999999864237777764
No 484
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=78.14 E-value=13 Score=42.50 Aligned_cols=34 Identities=21% Similarity=0.319 Sum_probs=30.3
Q ss_pred hcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeC
Q 001747 32 FASNILVSGMQGLGAEIAKNLILAGVKSVTLHDE 65 (1018)
Q Consensus 32 ~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~ 65 (1018)
...+|+|.|+|++|...+.-+...|.+++.++|.
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~ 202 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADV 202 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeC
Confidence 5789999999999999999888999988888875
No 485
>PRK07825 short chain dehydrogenase; Provisional
Probab=78.13 E-value=3.5 Score=45.35 Aligned_cols=35 Identities=29% Similarity=0.447 Sum_probs=29.3
Q ss_pred HhcCcEEEEcc-CcchHHHHHHHHhcCcccCCCccEEEecCC
Q 001747 428 LEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 468 (1018)
Q Consensus 428 l~~~~v~vvG~-GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D 468 (1018)
+.+++++|.|+ ||||.++++.|+..|. ++++++.+
T Consensus 3 ~~~~~ilVtGasggiG~~la~~l~~~G~------~v~~~~r~ 38 (273)
T PRK07825 3 LRGKVVAITGGARGIGLATARALAALGA------RVAIGDLD 38 (273)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC------EEEEEECC
Confidence 45678999984 9999999999999998 67777654
No 486
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=78.04 E-value=9 Score=41.50 Aligned_cols=38 Identities=26% Similarity=0.396 Sum_probs=33.8
Q ss_pred HHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCC
Q 001747 29 RRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 66 (1018)
Q Consensus 29 ~~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d 66 (1018)
..|+..||+|.|.|.+|..+++.|...|.+-+.+.|..
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~ 64 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSD 64 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 45789999999999999999999999998777788864
No 487
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=78.02 E-value=1 Score=50.36 Aligned_cols=41 Identities=29% Similarity=0.535 Sum_probs=31.5
Q ss_pred EEEEc-cCcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcc
Q 001747 433 VFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQ 478 (1018)
Q Consensus 433 v~vvG-~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRq 478 (1018)
|+|.| +|.||+|+++.|+..|. .+|+++|.|--...++.+.
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p-----~~lil~d~~E~~l~~l~~~ 42 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGP-----KKLILFDRDENKLYELERE 42 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB------SEEEEEES-HHHHHHHHHH
T ss_pred CEEEccccHHHHHHHHHHHhcCC-----CeEEEeCCChhHHHHHHHH
Confidence 67776 78899999999999999 8999998876655544444
No 488
>PRK13243 glyoxylate reductase; Reviewed
Probab=77.97 E-value=10 Score=43.62 Aligned_cols=37 Identities=14% Similarity=0.255 Sum_probs=32.9
Q ss_pred HHhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeCC
Q 001747 29 RRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEG 66 (1018)
Q Consensus 29 ~~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~d 66 (1018)
..|.+++|.|+|+|.+|.++|+.|...|. ++..+|..
T Consensus 146 ~~L~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~ 182 (333)
T PRK13243 146 YDVYGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSRT 182 (333)
T ss_pred cCCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCC
Confidence 46899999999999999999999999997 67888863
No 489
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=77.88 E-value=1.9 Score=49.35 Aligned_cols=32 Identities=25% Similarity=0.607 Sum_probs=29.1
Q ss_pred CcEEEEccCcchHHHHHHHHhcCcccCCCccEEEecCC
Q 001747 431 AKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDD 468 (1018)
Q Consensus 431 ~~v~vvG~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D 468 (1018)
.||.|||+|++|+.++..|+..|. +++++|.+
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~------~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGA------DVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCC------cEEEEecH
Confidence 579999999999999999999997 78888864
No 490
>PRK14982 acyl-ACP reductase; Provisional
Probab=77.82 E-value=2.9 Score=48.01 Aligned_cols=36 Identities=22% Similarity=0.340 Sum_probs=32.1
Q ss_pred HhhcCeEEEEcC-ChHHHHHHHHHHH-hcCCEEEEEeC
Q 001747 30 RLFASNILVSGM-QGLGAEIAKNLIL-AGVKSVTLHDE 65 (1018)
Q Consensus 30 ~L~~s~VlIiG~-gglG~eiaKnLvl-aGVg~itlvD~ 65 (1018)
.|++++|+|+|+ |.+|+++++.|.. .|++++++++.
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R 189 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVAR 189 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcC
Confidence 578899999999 8999999999986 48999999875
No 491
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=77.75 E-value=3.7 Score=45.23 Aligned_cols=36 Identities=33% Similarity=0.530 Sum_probs=30.1
Q ss_pred HHhcCcEEEEc-cCcchHHHHHHHHhcCcccCCCccEEEecCC
Q 001747 427 KLEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDD 468 (1018)
Q Consensus 427 ~l~~~~v~vvG-~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D 468 (1018)
.+.+++++|.| +|+||.++++.|+..|. +++++|.+
T Consensus 7 ~~~~k~vlVtGas~giG~~ia~~l~~~G~------~V~~~~r~ 43 (278)
T PRK08277 7 SLKGKVAVITGGGGVLGGAMAKELARAGA------KVAILDRN 43 (278)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC------EEEEEeCC
Confidence 35678899998 58999999999999998 68877654
No 492
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=77.74 E-value=1.2 Score=53.64 Aligned_cols=85 Identities=20% Similarity=0.401 Sum_probs=0.0
Q ss_pred hhHhhhhcCCccccceeeeeecCCCCCCCCCCCCCCCCccCchhhhhhhcCHHHH------------------HHHhcCc
Q 001747 371 QEVVKACSGKFHPLYQFFYFDSVESLPTEPLDSTEFKPINSRYDAQISVFGAKLQ------------------KKLEDAK 432 (1018)
Q Consensus 371 QEVIK~iT~kf~Pi~n~~~fD~~e~l~~~~~~~~~~~~~~~rydrq~~~~G~~~q------------------~~l~~~~ 432 (1018)
+|.++++..+| |- -.+.|.-+ ...+....-+||...+.+|..+.| .+|.+.|
T Consensus 230 defv~av~~~~-P~-~~Iq~EDf--------~~~naf~iL~kyr~~i~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~r 299 (559)
T PTZ00317 230 DEFMEAVSSRW-PN-AVVQFEDF--------SNNHCFDLLERYQNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPPEEQR 299 (559)
T ss_pred HHHHHHHHHhC-CC-eEEehhhc--------CCccHHHHHHHhccCCCEecccchhHHHHHHHHHHHHHHHhCCChhhcE
Q ss_pred EEEEccCcchHHHHHHHHh----cCcccCCC----ccEEEecCC
Q 001747 433 VFIVGSGALGCEFLKNVAL----MGVSCGNQ----GKLTITDDD 468 (1018)
Q Consensus 433 v~vvG~GgiG~e~lk~La~----~Gv~~~~~----g~i~ivD~D 468 (1018)
|+++|||+-|.-+++.|+. .|+ +. .+|+++|.+
T Consensus 300 iv~~GAGsAgiGia~ll~~~m~~~Gl---s~eeA~~~i~~vD~~ 340 (559)
T PTZ00317 300 IVFFGAGSAAIGVANNIADLAAEYGV---TREEALKSFYLVDSK 340 (559)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHcCC---ChhHhcCeEEEEcCC
No 493
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=77.61 E-value=11 Score=44.85 Aligned_cols=107 Identities=17% Similarity=0.131 Sum_probs=73.6
Q ss_pred eEEEEcCChHH-HHHHHHHHH----hcCCEEEEEeCCccCcccCCcccccCcCccCchHHHH-HHHHHHhhCCCcEEEEE
Q 001747 35 NILVSGMQGLG-AEIAKNLIL----AGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALA-SVQKLQELNNAVVLSTL 108 (1018)
Q Consensus 35 ~VlIiG~gglG-~eiaKnLvl----aGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a-~~~~L~elNp~V~v~~~ 108 (1018)
||.|||+|+.= -++++.|.. ..+++|+|+|-|.- -+ ..+.. +.+...+..+.++|+..
T Consensus 2 KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~---Rl-------------~~v~~l~~~~~~~~g~~~~v~~t 65 (425)
T cd05197 2 KIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEE---RL-------------DIILTIAKRYVEEVGADIKFEKT 65 (425)
T ss_pred EEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHH---HH-------------HHHHHHHHHHHHhhCCCeEEEEe
Confidence 79999999963 377777773 44689999996531 11 11233 34445667778888776
Q ss_pred ecCCChhhccCCceEEEccc--CHHHHHHHHHHHHhcCCCceeEEeeecceeEEEEe
Q 001747 109 TSKLTKEQLSDFQAVVFTDI--SLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFC 163 (1018)
Q Consensus 109 ~~~l~~~~~~~~dvVI~~~~--~~~~~~~ln~~c~~~~~~i~fi~~~~~G~~G~vf~ 163 (1018)
.+ -++-+.+.|.||.+.. ..+.+..=.++..++| + +-..+.|..|..+.
T Consensus 66 tD--~~~Al~gADfVi~~irvGg~~~r~~De~Iplk~G--~--~gqeT~G~GG~~~a 116 (425)
T cd05197 66 MD--LEDAIIDADFVINQFRVGGLTYREKDEQIPLKYG--V--IGQETVGPGGTFSG 116 (425)
T ss_pred CC--HHHHhCCCCEEEEeeecCChHHHHHHHhHHHHcC--c--ccccccCcchhhhh
Confidence 54 3467889999998864 5666666667888988 3 55788888886543
No 494
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=77.59 E-value=4.2 Score=43.91 Aligned_cols=38 Identities=18% Similarity=0.285 Sum_probs=32.1
Q ss_pred HHHhcCcEEEEc-cCcchHHHHHHHHhcCcccCCCccEEEecCCc
Q 001747 426 KKLEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDDV 469 (1018)
Q Consensus 426 ~~l~~~~v~vvG-~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~ 469 (1018)
..+.+++|+|.| .|+||..+++.|+..|. +++++|.+.
T Consensus 8 ~~~~~k~vlItG~~g~iG~~la~~l~~~G~------~Vi~~~r~~ 46 (247)
T PRK08945 8 DLLKDRIILVTGAGDGIGREAALTYARHGA------TVILLGRTE 46 (247)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCC------cEEEEeCCH
Confidence 456788999997 78899999999999987 888887653
No 495
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=77.54 E-value=3 Score=46.87 Aligned_cols=35 Identities=26% Similarity=0.406 Sum_probs=32.0
Q ss_pred HhhcCeEEEEcCChHHHHHHHHHHHhcCCEEEEEeC
Q 001747 30 RLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDE 65 (1018)
Q Consensus 30 ~L~~s~VlIiG~gglG~eiaKnLvlaGVg~itlvD~ 65 (1018)
.|.+++|+|+|+|++|..+|+.|...|. +++++|.
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R 182 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALGA-RVFVGAR 182 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeC
Confidence 5678999999999999999999999997 8999875
No 496
>PRK08265 short chain dehydrogenase; Provisional
Probab=77.33 E-value=3.1 Score=45.54 Aligned_cols=36 Identities=19% Similarity=0.394 Sum_probs=30.9
Q ss_pred HHhcCcEEEEcc-CcchHHHHHHHHhcCcccCCCccEEEecCC
Q 001747 427 KLEDAKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDD 468 (1018)
Q Consensus 427 ~l~~~~v~vvG~-GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D 468 (1018)
.+.+++++|.|+ |+||.++++.|+..|. +++++|.+
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~------~V~~~~r~ 39 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGA------RVAIVDID 39 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC------EEEEEeCC
Confidence 356789999985 9999999999999997 88888754
No 497
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=77.32 E-value=6.1 Score=47.07 Aligned_cols=106 Identities=16% Similarity=0.155 Sum_probs=72.9
Q ss_pred eEEEEcCChHHH-HHHHHHHH----hcCCEEEEEeCCccCcccCCcccccCcCccCchHHHHHHHH-HHhhCCCcEEEEE
Q 001747 35 NILVSGMQGLGA-EIAKNLIL----AGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQK-LQELNNAVVLSTL 108 (1018)
Q Consensus 35 ~VlIiG~gglG~-eiaKnLvl----aGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~~-L~elNp~V~v~~~ 108 (1018)
||.|||+|+.=+ ++++.|+. .+++.|+|+|-|.- -| ......+++ ..+.++.++|+..
T Consensus 2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~---rl-------------~~v~~l~~~~~~~~g~~~~v~~T 65 (437)
T cd05298 2 KIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAE---RQ-------------EKVAEAVKILFKENYPEIKFVYT 65 (437)
T ss_pred eEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHH---HH-------------HHHHHHHHHHHHhhCCCeEEEEE
Confidence 799999999743 67777764 45789999996541 11 123333344 4556667777776
Q ss_pred ecCCChhhccCCceEEEccc--CHHHHHHHHHHHHhcCCCceeEEeeecceeEEEE
Q 001747 109 TSKLTKEQLSDFQAVVFTDI--SLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVF 162 (1018)
Q Consensus 109 ~~~l~~~~~~~~dvVI~~~~--~~~~~~~ln~~c~~~~~~i~fi~~~~~G~~G~vf 162 (1018)
.+ -++-+.+.|.||.+.. ..+.+..=.+++.++| + +...+.|..|..+
T Consensus 66 td--r~eAl~gADfVi~~irvGg~~~r~~De~Ip~kyG--i--~gqET~G~GG~~~ 115 (437)
T cd05298 66 TD--PEEAFTDADFVFAQIRVGGYAMREQDEKIPLKHG--V--VGQETCGPGGFAY 115 (437)
T ss_pred CC--HHHHhCCCCEEEEEeeeCCchHHHHHHhHHHHcC--c--ceecCccHHHHHH
Confidence 54 3467889999998764 5566766667899999 5 6668888888554
No 498
>PRK12827 short chain dehydrogenase; Provisional
Probab=77.29 E-value=5.2 Score=42.87 Aligned_cols=33 Identities=33% Similarity=0.569 Sum_probs=28.7
Q ss_pred HhcCcEEEEc-cCcchHHHHHHHHhcCcccCCCccEEEec
Q 001747 428 LEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITD 466 (1018)
Q Consensus 428 l~~~~v~vvG-~GgiG~e~lk~La~~Gv~~~~~g~i~ivD 466 (1018)
+.+++++|.| .|+||.++++.|+..|. ++++++
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~g~------~v~~~~ 37 (249)
T PRK12827 4 LDSRRVLITGGSGGLGRAIAVRLAADGA------DVIVLD 37 (249)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCC------eEEEEc
Confidence 4568899998 79999999999999997 677776
No 499
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=77.26 E-value=5.4 Score=44.64 Aligned_cols=88 Identities=20% Similarity=0.274 Sum_probs=0.0
Q ss_pred CcEEEEcc-CcchHHHHHHHHhcCcccCCCccEEEecCCcccccccCcccCcccccccchHHHHHHHHHHhhCCCCeEEE
Q 001747 431 AKVFIVGS-GALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATSINPRLNIEA 509 (1018)
Q Consensus 431 ~~v~vvG~-GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D~Ie~sNLnRqflf~~~diG~~Ka~va~~~l~~~np~~~i~~ 509 (1018)
+||+|+|+ |-||..+.+.|...|. .++.++...++..| .+.+++.+.+..|
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~------~v~~~~r~~~dl~d----------------~~~~~~~~~~~~p------ 52 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGY------EVIATSRSDLDLTD----------------PEAVAKLLEAFKP------ 52 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSE------EEEEESTTCS-TTS----------------HHHHHHHHHHH--------
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCC------EEEEeCchhcCCCC----------------HHHHHHHHHHhCC------
Q ss_pred EecccCCccccccccccccCccEEEEcc-----------------cChhHHHHHHhhccccccceEecccCCccc
Q 001747 510 LQNRVGPETENVFDDTFWENITCVINAL-----------------DNVNARLYVDQRCLYFQKPLLESGTLGAKC 567 (1018)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~dvVi~al-----------------Dn~~ar~~v~~~c~~~~~pli~~g~~g~~g 567 (1018)
|+||+|. -|..+-..+.+.|...+.++|.-.|....+
T Consensus 53 ---------------------d~Vin~aa~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li~~STd~VFd 106 (286)
T PF04321_consen 53 ---------------------DVVINCAAYTNVDACEKNPEEAYAINVDATKNLAEACKERGARLIHISTDYVFD 106 (286)
T ss_dssp ---------------------SEEEE------HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEEEEEGGGS-
T ss_pred ---------------------CeEeccceeecHHhhhhChhhhHHHhhHHHHHHHHHHHHcCCcEEEeeccEEEc
No 500
>PRK05872 short chain dehydrogenase; Provisional
Probab=77.23 E-value=5.8 Score=44.43 Aligned_cols=35 Identities=26% Similarity=0.495 Sum_probs=30.0
Q ss_pred HhcCcEEEEc-cCcchHHHHHHHHhcCcccCCCccEEEecCC
Q 001747 428 LEDAKVFIVG-SGALGCEFLKNVALMGVSCGNQGKLTITDDD 468 (1018)
Q Consensus 428 l~~~~v~vvG-~GgiG~e~lk~La~~Gv~~~~~g~i~ivD~D 468 (1018)
+.+++++|.| .||||.++++.|+..|. ++++++.+
T Consensus 7 l~gk~vlItGas~gIG~~ia~~l~~~G~------~V~~~~r~ 42 (296)
T PRK05872 7 LAGKVVVVTGAARGIGAELARRLHARGA------KLALVDLE 42 (296)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEeCC
Confidence 5678899998 59999999999999998 78887643
Done!