Query 001747
Match_columns 1018
No_of_seqs 430 out of 3763
Neff 7.2
Searched_HMMs 29240
Date Tue Mar 26 15:46:54 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001747.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1046-1050//hhsearch_pdb/001747hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cmm_A Ubiquitin-activating en 1.0 1 1 1883.4 85.5 999 8-1017 2-1015(1015)
2 1y8q_B Anthracycline-, ubiquit 1.0 1 1 861.8 28.2 519 415-1004 2-536 (640)
3 1tt5_A APPBP1, amyloid protein 1.0 1 1 548.2 14.0 380 10-396 8-525 (531)
4 1z7l_A Ubiquitin-activating en 1.0 1 1 540.8 23.6 269 585-860 8-276 (276)
5 1y8q_A Ubiquitin-like 1 activa 1.0 1 1 494.5 27.0 322 7-397 10-338 (346)
6 2nvu_B Maltose binding protein 1.0 1 1 478.2 28.5 359 412-979 392-779 (805)
7 1tt5_B Ubiquitin-activating en 1.0 1 1 477.8 23.1 360 411-979 7-408 (434)
8 1tt5_A APPBP1, amyloid protein 1.0 1 1 317.9 26.1 192 410-611 12-203 (531)
9 2nvu_B Maltose binding protein 1.0 1 1 296.5 25.9 281 16-396 393-693 (805)
10 1y8q_A Ubiquitin-like 1 activa 1.0 1 1 294.5 20.0 165 410-585 16-180 (346)
No 1
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=1883.37 Aligned_cols=999 Identities=45% Similarity=0.815 Sum_probs=938.7
Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 98214555544331148999998533919999498479999999999659989999399357336875434686844752
Q 001747 8 QTDIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKN 87 (1018)
Q Consensus 8 ~~~~~~~~YsRQi~~~G~~~q~kL~~s~VlIiG~gglG~EiaknLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ 87 (1018)
..+++++|||||+++||.++|++|++++|+|+|+||+|+|+||||+++|||+++|+|+|.|+.+||+||||++++|+|++
T Consensus 2 ~~~id~~rY~Rqi~l~G~~~q~rL~~s~VlIvG~GGlGseiak~La~aGVg~itlvD~D~V~~sNL~RQ~l~~~~dvG~~ 81 (1015)
T 3cmm_A 2 AGEIDESLYSRQLYVLGKEAMLKMQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPVQLADLSTQFFLTEKDIGQK 81 (1015)
T ss_dssp -CCCCHHHHHHHHHHSCHHHHHHHTTCEEEEECCSHHHHHHHHHHHHHCCSEEEEECCSBCCGGGGGTCTTCCGGGTTSB
T ss_pred CHHHHHHHCCCHHHHCCHHHHHHHHCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCEECHHHHCCCCCCCHHHCCHH
T ss_conf 23356676233375359999998725979998878689999999998189769996698751633035602675553809
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCHHHCCCCCEEEECCC-CHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEEEECC
Q ss_conf 89999999985099738999706787200047726897056-87789999999986399803599422141599996629
Q 001747 88 RALASVQKLQELNNAVVLSTLTSKLTKEQLSDFQAVVFTDI-SLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFCDFG 166 (1018)
Q Consensus 88 ka~a~~~~L~elNp~v~v~~~~~~l~~~~l~~~dvVv~~~~-~~~~~~~in~~c~~~~~~ipfI~~~~~G~~G~vf~d~g 166 (1018)
||++++++|+++||+|+|+++...++++++.+||+||+|.+ +...+..+|++|++++ +|||++++.|++|++|+++|
T Consensus 82 Ka~a~~~~L~~lNP~v~v~~~~~~l~~~~l~~~DvVv~~~d~~~~~r~~ln~~c~~~~--iplI~~~~~G~~G~v~~d~~ 159 (1015)
T 3cmm_A 82 RGDVTRAKLAELNAYVPVNVLDSLDDVTQLSQFQVVVATDTVSLEDKVKINEFCHSSG--IRFISSETRGLFGNTFVDLG 159 (1015)
T ss_dssp HHHHHHHHHTTSCTTSCEEECCCCCCSTTGGGCSEEEECTTSCHHHHHHHHHHHHHHT--CEEEEEEEETTEEEEEEECC
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCCEEEECCCCCHHHHHHHHHHHHHCC--CCEEEEEECCCEEEEEECCC
T ss_conf 9999999999878997599962778988981498999937899799999999999708--98899975256799996589
Q ss_pred CCEEEECCCCCCCCCEEEEEECCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCC
Q ss_conf 94279669999995213300116888413103555433444871588874054345899971013468730111255565
Q 001747 167 PEFTVVDVDGEDPHTGIIASISNDNPALVSCVDDERLEFQDGDLVVFSEVHGMTELNDGKPRKIKSARPYSFTLEEDTTN 246 (1018)
Q Consensus 167 ~~f~v~d~~ge~p~~~~i~~i~~~~~~~v~~~~~~~~~l~~gd~v~f~~v~gm~~ln~~~~~~i~~~~~~~f~i~~dt~~ 246 (1018)
+.|.|.+++|+.|.++++.+| +.|++++++++.+|++++||++.|++++||.++|++++.++++.+|++|.| +|++.
T Consensus 160 ~~~~c~~~~~~~p~~~~i~~i--~~p~~v~~l~~~~h~~~~gd~v~F~ev~gm~elN~~e~~~i~~~~p~~f~I-~Dts~ 236 (1015)
T 3cmm_A 160 DEFTVLDPTGEEPRTGMVSDI--EPDGTVTMLDDNRHGLEDGNFVRFSEVEGLDKLNDGTLFKVEVLGPFAFRI-GSVKE 236 (1015)
T ss_dssp SCEEESBSSCCCCCEEEEEEE--CTTCEEEESTTCCCCCCTTCEEEEECCBTSGGGGSSCCEECEEEETTEEEC-SCCTT
T ss_pred CCEEEEECCCCCCCCCCCCCC--CCCCEEEEEECCCCCCCCCCEEEEEEECCCHHHCCCCCEEEEECCCCEEEE-CCCCH
T ss_conf 856996179999865444578--998446764021146777886788850461421676664669758860685-46210
Q ss_pred CCCEEECCEEEEEECCEEECCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-CCCCCCCCHHHHHHHHH
Q ss_conf 44213302489961770302775377533999720156766899983999999999999982-99999999989999999
Q 001747 247 YGTYVKGGIVTQVKQPKVLNFKPLREALEDPGDFLLSDFSKFDRPPPLHLAFQALDKFVSEL-GRFPVAGSEEDAQKLIS 325 (1018)
Q Consensus 247 ~~~y~~gg~~~qvk~p~~~~f~sl~~~L~~p~~~~~~d~~k~~~~~~l~~~~~al~~F~~~~-gr~P~~~~~~D~~~l~~ 325 (1018)
|..|++||.++|+|+|+.++|++|++.+.+| .++.+|+.|.+++..+|++|||+++|.++| ||+|++++++|++++.+
T Consensus 237 ~~~yv~~g~~~qvk~p~~i~f~~l~~~l~~p-~~l~~d~~k~~~~~~l~~~~~Al~~F~~~~~gr~P~~~~~~D~~~l~~ 315 (1015)
T 3cmm_A 237 YGEYKKGGIFTEVKVPRKISFKSLKQQLSNP-EFVFSDFAKFDRAAQLHLGFQALHQFAVRHNGELPRTMNDEDANELIK 315 (1015)
T ss_dssp TCCCCBCCEEEECCCCEEECCCCHHHHHHSC-CBCCSCGGGTHHHHHHHHHHHHHHHHHHHTTTCCCCTTCHHHHHHHHH
T ss_pred HHHHHCCCEEEEECCCCCCCHHHHHHHHCCH-HHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
T ss_conf 0566327546982077643788899997385-777777750586269999999999999965899999999899999999
Q ss_pred HHHHHHHHCCCC--CCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC---CC
Q ss_conf 999998850999--8788788999999961235557313463121345676620398433210355203778899---98
Q 001747 326 VATNINESLGDG--RVEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLYQFFYFDSVESLPT---EP 400 (1018)
Q Consensus 326 l~~~~~~~~~~~--~~~~i~~~li~~~~~~~~~el~pvaAviGGiaAQEVIK~iTgkf~Pi~q~l~fD~~e~l~~---~~ 400 (1018)
++++++.+.+.. ....+++++++++++++++++||||||+||++||||||+|||||+||+||+|||+++++|+ .+
T Consensus 316 ~a~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~el~pvaA~iGGivAQEVIKaiT~kf~Pi~~~~~~d~~~~~~~~~~~~ 395 (1015)
T 3cmm_A 316 LVTDLSVQQPEVLGEGVDVNEDLIKELSYQARGDIPGVVAFFGGLVAQEVLKACSGKFTPLKQFMYFDSLESLPDPKNFP 395 (1015)
T ss_dssp HHHHHHHHCHHHHCTTCCCCHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHCBSCCCCSEEEEECGGGSCCTTTSC
T ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCCCEEEECCHHHCCCCCCCC
T ss_conf 99999986288854323476999999998648661708888534579999998504777620168863365303334578
Q ss_pred CCCCCCCCCCCCHHHHHHHCCHHHHHHHHCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf 98888899558001456502798899873392999926951699999988327566889627984198024456674667
Q 001747 401 LDSTEFKPINSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFL 480 (1018)
Q Consensus 401 ~~~~~~~~~~~ry~rqi~~~G~~~q~~L~~~~v~ivG~GgiG~e~lk~La~~Gv~~~~~g~i~iiD~D~ie~sNLnRq~l 480 (1018)
++++++.+.++||+||+++||.++|++|++++|+||||||+||+++++||++||+||++|+|+|+|+|+|+.||||||||
T Consensus 396 ~~~~~~~~~~~Ry~rq~~l~G~~~q~kL~~~~VlvVGaGGlGsevlk~La~~Gv~~g~~G~i~lvD~D~Ve~SNLnRQ~l 475 (1015)
T 3cmm_A 396 RNEKTTQPVNSRYDNQIAVFGLDFQKKIANSKVFLVGSGAIGCEMLKNWALLGLGSGSDGYIVVTDNDSIEKSNLNRQFL 475 (1015)
T ss_dssp CSTTTTSCCSSTTHHHHHHHCHHHHHHHHTCEEEEECCSHHHHHHHHHHHHHTTTCSTTCEEEEECCCBCCGGGTTTCTT
T ss_pred CCHHHCCCHHHHHHHHHHHCCHHHHHHHHCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCCCCCC
T ss_conf 77343032220013378744999999986195999916779999999999738675899869998098844200343216
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCC--EEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCCCEE
Q ss_conf 6546444039999999998359997--69998365687621245110146865999854575699999750123542468
Q 001747 481 FRDWNIGQAKSTVAASAATSINPRL--NIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLL 558 (1018)
Q Consensus 481 f~~~diG~~Ka~va~~~i~~~np~~--~i~~~~~~~~~~~~~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~pli 558 (1018)
|+.+|||++||++|+++++++||++ +|+++..++.++++.+++++||+++|+|++|+||+++|+++++.|+.+++|+|
T Consensus 476 f~~~dvG~~Ka~~aa~~l~~iNP~v~~~v~~~~~~i~~~~~~~~~~~~~~~~D~Vi~a~Dn~~aR~~ln~~c~~~~~Pli 555 (1015)
T 3cmm_A 476 FRPKDVGKNKSEVAAEAVCAMNPDLKGKINAKIDKVGPETEEIFNDSFWESLDFVTNALDNVDARTYVDRRCVFYRKPLL 555 (1015)
T ss_dssp CCGGGTTSBHHHHHHHHHHHHCGGGTTTEEEECCCCSGGGTTTSCHHHHHHCSEEEECCSSHHHHHHHHHHHHHHTCCEE
T ss_pred CCHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHCCHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 79245777999999999998788876649999642473033220276642699999898999999999987887498689
Q ss_pred ECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHH
Q ss_conf 52667732201899175455446788999999996433689998035899999985643015925563201797466655
Q 001747 559 ESGTLGAKCNTQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSNPVEYTTS 638 (1018)
Q Consensus 559 ~~g~~g~~g~~~v~~p~~t~~y~~~~~~~~~~~p~Ct~~~~P~~~~h~i~wAk~~f~~~f~~~~~~~~~~l~~~~~~~~~ 638 (1018)
++|+.|++|++++++|+.|+||.|..+|+++.+|+||+++||+.++|||+|||++|+++|...++++|+|+++| .|++.
T Consensus 556 ~~g~~G~~G~v~v~~p~~t~cy~c~~dp~~~~~P~Ctl~~~P~~~~h~i~wa~~~f~~lf~~~~~~~~~~l~~~-~~~~~ 634 (1015)
T 3cmm_A 556 ESGTLGTKGNTQVIIPRLTESYSSSRDPPEKSIPLCTLRSFPNKIDHTIAWAKSLFQGYFTDSAENVNMYLTQP-NFVEQ 634 (1015)
T ss_dssp EEEEETTEEEEEEECTTTBCCGGGSCCCCCCCCCHHHHHTCCCSHHHHHHHHHHHHHHHHTHHHHHHHHHHHCT-THHHH
T ss_pred EECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHH
T ss_conf 95777566653899479998627789998888986342689999289999999999999865456665420481-36889
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 32048546778899999985221122237799999999999999999997630995311358987755899999952248
Q 001747 639 MANAGDAQARDNLERVLECLDKEKCEIFQDCITWARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFS 718 (1018)
Q Consensus 639 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ci~~a~~~f~~~F~~~i~~ll~~~p~~~~~~~g~~fWs~~kr~P~pl~fd 718 (1018)
+.+....+. +.|+.+++.| ..+|.+|++|++||+.+|+++|+++|+|||++||+|++|++|++||+|+||+|+||+||
T Consensus 635 ~~~~~~~~~-~~l~~~~~~l-~~~~~~~~~c~~~a~~~f~~~F~~~I~~Ll~~~p~d~~~~~g~~fW~~~kr~P~pl~fd 712 (1015)
T 3cmm_A 635 TLKQSGDVK-GVLESISDSL-SSKPHNFEDCIKWARLEFEKKFNHDIKQLLFNFPKDAKTSNGEPFWSGAKRAPTPLEFD 712 (1015)
T ss_dssp HHC---CCH-HHHHHHHHHH-HSCCSSHHHHHHHHHHHHHHHHTHHHHHHHHHSCTTCBCSTTCBSSCTTCCCCCCCCCC
T ss_pred HHHCCCHHH-HHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 874121027-8999999975-31877589999999999999988999999974883101356762335788899870348
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCC--CCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 99982057799999999998199999--8999967899996413778768778861103300113233574718999999
Q 001747 719 SADPSHLHFVMAASILRAETFGIPIP--DWTNNPKMLAEAVDKVMVPDFLPKKDAKILTDEKATTLSTASVDDAAVINDL 796 (1018)
Q Consensus 719 ~~n~~h~~fi~~~a~l~a~~~~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1018)
.+|++|++||+++|+|+|.+|||+.+ .|..+.+.+.++++++.+|+|.|+.++++..++++...++...++.+.++.|
T Consensus 713 ~~~~~h~~fi~~~a~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~ki~~~~~~~~~~~~~~~~~~~~~~l 792 (1015)
T 3cmm_A 713 IYNNDHFHFVVAGASLRAYNYGIKSDDSNSKPNVDEYKSVIDHMIIPEFTPNANLKIQVNDDDPDPNANAANGSDEIDQL 792 (1015)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHTCCCSSTTSSCCHHHHHHHHTTCCCCCCCCCSSCCCCSSTTSSCC---------CCHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEECCCHHHHCCCCCCCCCHHHHHHH
T ss_conf 98778899999998767876399974223457999999998607677767865762014532201001454438999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99999965149999976870111368988145899997543234169898628789988256563135667899999999
Q 001747 797 IIKLEQCRKNLPSGFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCL 876 (1018)
Q Consensus 797 ~~~l~~~~~~~~~~~~~~~~~feKDdd~n~hidFi~aasNlRa~ny~I~~~~~~~~k~iAG~IIPAIaTTtA~Vagl~~l 876 (1018)
.++++.... ..+.++.|++||||||+|+|||||+|||||||+||+||++|||++|+||||||||||||||+||||+|+
T Consensus 793 ~~~l~~~~~--~~~~~~~~~~FeKDDd~n~h~dFi~aasNlRa~ny~I~~~~~~~~k~iaG~IIPAIaTT~AivaGl~~l 870 (1015)
T 3cmm_A 793 VSSLPDPST--LAGFKLEPVDFEKDDDTNHHIEFITACSNCRAQNYFIETADRQKTKFIAGRIIPAIATTTSLVTGLVNL 870 (1015)
T ss_dssp HTTSCCGGG--GTTCCCCCCCCCTTCTTSSHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHTTCCCCCHHHHHHHHHHHHH
T ss_pred HHHHCCCHH--CCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf 997402100--035777851566578830289999999888898749996689999998477375100189999999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE-EEEEEEEECCCCCHHHHHHHHHHC-CCCEEEEEC
Q ss_conf 999985089985422100012345742356899985432377520-278689709988699999999984-992112103
Q 001747 877 ELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVIKHRDMSW-TVWDRWILKDNPTLRELIQWLKDK-GLNAYSISC 954 (1018)
Q Consensus 877 El~K~l~~~~~~~~~rn~f~nla~p~~~~~ep~~~~~~~~~~~~~-t~wd~~~i~~~~TL~~li~~~~~~-~l~~~~i~~ 954 (1018)
|+||++++.+++++|||+|+|||+|++.++||.+|++.++...+| |+||||++.+++||++|+++++++ |++++||++
T Consensus 871 E~~K~~~~~~~~~~~kn~f~nla~~~~~~~~p~~~~~~~~~~~~~~t~wd~~~v~~~~Tl~~li~~~~~~~~~~~~~i~~ 950 (1015)
T 3cmm_A 871 ELYKLIDNKTDIEQYKNGFVNLALPFFGFSEPIASPKGEYNNKKYDKIWDRFDIKGDIKLSDLIEHFEKDEGLEITMLSY 950 (1015)
T ss_dssp HHHHHHTTCCCGGGCCEEEEETTTTEEEEECCCBCCEEEETTEEEETTTCEEEEESCCBHHHHHHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHCCCCHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCEEECC
T ss_conf 99999745664244455888606771144478888888777787775789999799983999999999985986134326
Q ss_pred CCCEEECCCCC--CHHCCCCCCHHHHHHHHHCCCCCCCEEEEEEEEEEECCCCCCCCCCEEEEEE
Q ss_conf 98312337896--5010136918999897413679996039999999534999954467089993
Q 001747 955 GSCLLFNSMFP--RHKERMDKKVVDLAREVAKVELPPYRRHLDVVVACEDDEDNDIDIPLISIYF 1017 (1018)
Q Consensus 955 g~~~ly~~~~~--~~~~~l~~~l~~l~~~~~~~~l~~~~~~l~l~v~~~d~~~~dv~~P~v~~~~ 1017 (1018)
|+++||++++| ++++||+++|++|++.++++++|++++||+|+++|+|++++|+++|+|||+|
T Consensus 951 ~~~~ly~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~d~~~p~v~~~~ 1015 (1015)
T 3cmm_A 951 GVSLLYASFFPPKKLKERLNLPITQLVKLVTKKDIPAHVSTMILEICADDKEGEDVEVPFITIHL 1015 (1015)
T ss_dssp TTEEEEETTCCHHHHHHHTTSBHHHHHHHHSSSCCCSSCCEEEEEEEEECTTSCEECCCEEEEEC
T ss_pred CCCEEEECCCCCHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEC
T ss_conf 88679834887244577606879999875056768987318999999538999867787479859
No 2
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Probab=1.00 E-value=1 Score=861.77 Aligned_cols=519 Identities=25% Similarity=0.400 Sum_probs=424.7
Q ss_pred HHHHHCCHHHHHHHHCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 45650279889987339299992695169999998832756688962798419802445667466765464440399999
Q 001747 415 AQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVA 494 (1018)
Q Consensus 415 rqi~~~G~~~q~~L~~~~v~ivG~GgiG~e~lk~La~~Gv~~~~~g~i~iiD~D~ie~sNLnRq~lf~~~diG~~Ka~va 494 (1018)
.|+++||.++|++|++++|+||||||+||+++++||++|| |+|+|+|+|+|+.|||||||||+.+|||++||++|
T Consensus 2 ~qi~l~G~e~Q~kL~~s~VlVVGaGGLGsevak~La~aGV-----G~ItlvD~D~Ve~SNLnRQflf~~~dVGk~KAeaa 76 (640)
T 1y8q_B 2 ALSRGLPRELAEAVAGGRVLVVGAGGIGCELLKNLVLTGF-----SHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVA 76 (640)
T ss_dssp ----CCCHHHHHHHHHCEEEEECCSHHHHHHHHHHHHHTC-----CEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHH
T ss_pred CHHHHCCHHHHHHHHCCEEEEECCCHHHHHHHHHHHHCCC-----CEEEEECCCEECHHHCCCCCCCCHHHCCHHHHHHH
T ss_conf 6165449999999856969998768899999999998489-----73799539987722048771779467482999999
Q ss_pred HHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEC
Q ss_conf 99998359997699983656876212451101468659998545756999997501235424685266773220189917
Q 001747 495 ASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIP 574 (1018)
Q Consensus 495 ~~~i~~~np~~~i~~~~~~~~~~~~~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~pli~~g~~g~~g~~~v~~p 574 (1018)
+++++++||+++|+++..++.+.. +..+|++++|+|++|+||+++|+++++.|+.+++|+|++|+.|+.|++++++|
T Consensus 77 a~~L~~iNP~v~V~a~~~~i~~~~---~~~~~~~~~DlVvda~Dn~~aR~~ln~~c~~~~iPlI~~g~~G~~G~v~vi~p 153 (640)
T 1y8q_B 77 KESVLQFYPKANIVAYHDSIMNPD---YNVEFFRQFILVMNALDNRAARNHVNRMCLAADVPLIESGTAGYLGQVTTIKK 153 (640)
T ss_dssp HHHHHTTCTTCEEEEEESCTTSTT---SCHHHHTTCSEEEECCSCHHHHHHHHHHHHHHTCCEEEEEEETTEEEEEEECT
T ss_pred HHHHHHHCCCCEEEEEECCCCHHH---HHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEECC
T ss_conf 999998789974999825665023---24766248999998988989999999999874998899987314532899889
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCH--HHHHHHCCCCHH-HHHHHHHCCCHHHHHHH
Q ss_conf 545544678899999999643368999803589999998564301592--556320179746-66553204854677889
Q 001747 575 HLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTP--AEVNAYLSNPVE-YTTSMANAGDAQARDNL 651 (1018)
Q Consensus 575 ~~t~~y~~~~~~~~~~~p~Ct~~~~P~~~~h~i~wAk~~f~~~f~~~~--~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l 651 (1018)
+.|+||.|..+|+++.+|+||++++|+.++|||+||++.|+.+|+..+ ++++.++++|.. +... ......+..+.+
T Consensus 154 ~~t~Cy~C~~~p~~~~~p~Cti~~~p~~~~hci~~a~~~f~~lf~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 232 (640)
T 1y8q_B 154 GVTECYECHPKPTQRTFPGATIRNTPSEPIHCIVWAKYLFNQLFGEEDADQEVSPDRADPEAAWEPT-EAEARARASNED 232 (640)
T ss_dssp TTSCCTTSSCCCCCCCCCTTTTTSCCCSHHHHHHHHHHHHHHHHSCCCGGGCCSCCTTCTTSCCC---------------
T ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHH-HHHHHHHHHHHH
T ss_conf 9998745578898765120023489886277999999999998478630334201323445554454-431001234456
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 999998522112223779999999-9999999999997630995311358987755899999952248999820577999
Q 001747 652 ERVLECLDKEKCEIFQDCITWARL-KFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFVMA 730 (1018)
Q Consensus 652 ~~~~~~l~~~~~~~~~~ci~~a~~-~f~~~F~~~i~~ll~~~p~~~~~~~g~~fWs~~kr~P~pl~fd~~n~~h~~fi~~ 730 (1018)
+.+... ...+|.+|+.||+. +|+++|+++|+|||++ ++||++ ||+|+||+||..++.|+.....
T Consensus 233 ~~~~~~----~~~~~~~~~~~a~~~~f~k~F~~~I~~Ll~~----------~~fW~~-kr~P~pl~fd~~~~~~~~~~~~ 297 (640)
T 1y8q_B 233 GDIKRI----STKEWAKSTGYDPVKLFTKLFKDDIRYLLTM----------DKLWRK-RKPPVPLDWAEVQSQGEETNAS 297 (640)
T ss_dssp -----------CHHHHHHTTSCHHHHHHHHHTHHHHHHTTC----------GGGCSS-SCCCCCCCHHHHHHC-------
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCCCCC-CCCCCCCCCCCCCCCCCCCCCC
T ss_conf 678887----6655777676778889999875689999738----------512268-9899886557666223544345
Q ss_pred -HHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf -9999999819999989999678999964137787687788611033001132335747189999999999996514999
Q 001747 731 -ASILRAETFGIPIPDWTNNPKMLAEAVDKVMVPDFLPKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLPS 809 (1018)
Q Consensus 731 -~a~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 809 (1018)
.+++. .+|++ +.+.++.........+.++.|.+.|...
T Consensus 298 ~~~~~~--~~~~~---------------------------------d~~~~~~~~~~~~~~~~~~~l~~~l~~~------ 336 (640)
T 1y8q_B 298 DQQNEP--QLGLK---------------------------------DQQVLDVKSYARLFSKSIETLRVHLAEK------ 336 (640)
T ss_dssp ---------CCCG---------------------------------GGSCCCHHHHHHHHHHHHHHHHHHHHHT------
T ss_pred CCCCCC--CCCCC---------------------------------HHHHCCHHHHHHHHHHHHHHHHHHHHHC------
T ss_conf 311243--35887---------------------------------2443486565566799999999873101------
Q ss_pred CCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99768701113689881458999975432341698986287899882565631356678999999999999850899854
Q 001747 810 GFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLE 889 (1018)
Q Consensus 810 ~~~~~~~~feKDdd~n~hidFi~aasNlRa~ny~I~~~~~~~~k~iAG~IIPAIaTTtA~Vagl~~lEl~K~l~~~~~~~ 889 (1018)
.++.|++||||||+ |||||+|||||||+||+||++|||++|+||||||||||||||+||||+|+|+||++++ +++
T Consensus 337 -~~~~~~~FdKDDd~--h~dFV~aaaNlRA~~y~I~~~~~~~~K~iAG~IIPAIATTnAiVaGl~~lE~~Kvl~~--~~~ 411 (640)
T 1y8q_B 337 -GDGAELIWDKDDPS--AMDFVTSAANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLKILSG--KID 411 (640)
T ss_dssp -CTTCCCCCCTTCHH--HHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHTT--CGG
T ss_pred -CCCCCCCCCCCCHH--HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHC--CHH
T ss_conf -45777661789888--9899999988899975998689999998847735411027999999999999998743--177
Q ss_pred CCCCCCCCCCCC----CCCCCCCCCCCCCCC-CCCCEEEEEEEEECCCCCHHHHHHHH-HHC-CCCEEEEEC---CCCEE
Q ss_conf 221000123457----423568999854323-77520278689709988699999999-984-992112103---98312
Q 001747 890 DYRNTFANLALP----LFSMAEPVPPKVIKH-RDMSWTVWDRWILKDNPTLRELIQWL-KDK-GLNAYSISC---GSCLL 959 (1018)
Q Consensus 890 ~~rn~f~nla~p----~~~~~ep~~~~~~~~-~~~~~t~wd~~~i~~~~TL~~li~~~-~~~-~l~~~~i~~---g~~~l 959 (1018)
+|||+|+|++.| ++.+++|.+|++.++ +...+++|+++++. ++||++|++++ +++ |++++||++ |+++|
T Consensus 412 ~~kn~f~n~a~~~~~~~~~~~~p~~p~~~c~vc~~~~~~~~~~~~~-~~TL~~li~~~~~~~~~l~~~~is~~~~~~~~l 490 (640)
T 1y8q_B 412 QCRTIFLNKQPNPRKKLLVPCALDPPNPNCYVCASKPEVTVRLNVH-KVTVLTLQDKIVKEKFAMVAPDVQIEDGKGTIL 490 (640)
T ss_dssp GCEEEEECSSCCTTSEEEEEEECCCCCTTCTTTSSSCEEEEEECTT-TCBHHHHHHCCCCCCTCCSSCEEEESSSSCCEE
T ss_pred HHHHHHEEECCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEECC-CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCEE
T ss_conf 6422531303577776785166679899975658742799999479-780999999998886199786699976998388
Q ss_pred ECCCCCCHHCCCCCCHHHH-HHHHHCCCCCCCEEEEEEEEEEECCC
Q ss_conf 3378965010136918999-89741367999603999999953499
Q 001747 960 FNSMFPRHKERMDKKVVDL-AREVAKVELPPYRRHLDVVVACEDDE 1004 (1018)
Q Consensus 960 y~~~~~~~~~~l~~~l~~l-~~~~~~~~l~~~~~~l~l~v~~~d~~ 1004 (1018)
|+.+++++++||+++|++| ++..++..+++....+.|++.+...+
T Consensus 491 y~~~~~~~~~~l~~~l~el~v~~~~~~~v~d~~~~~~~~i~~~~~~ 536 (640)
T 1y8q_B 491 ISSEEGETEANNHKKLSEFGIRNGSRLQADDFLQDYTLLINILHSE 536 (640)
T ss_dssp ECSSSSSSTTGGGSBGGGGTCCTTCEEEEEETTTTEEEEEEEEECS
T ss_pred EECCCHHHHHHHHCCHHHHCCCCCCEEEECCCCCCEEEEEEEEECC
T ss_conf 8536666677641838872835785898468775479999999567
No 3
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*
Probab=1.00 E-value=1 Score=548.15 Aligned_cols=380 Identities=26% Similarity=0.354 Sum_probs=307.0
Q ss_pred CHHH-HHHHHHHHCCCHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 2145-555443311489999985339199994984799999999996599899993993573368754346868447528
Q 001747 10 DIDE-DLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNR 88 (1018)
Q Consensus 10 ~~~~-~~YsRQi~~~G~~~q~kL~~s~VlIiG~gglG~EiaknLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~k 88 (1018)
++|+ +||+||+++||.++|++|++++|+|+|+||+|+|++|||+++|||+|+|+|+|.|+.+||+||||++++|+|++|
T Consensus 8 ~id~~~rY~Rqi~l~G~~~q~~L~~~~VlvvG~GGlGseiak~La~aGVg~itlvD~D~Ve~sNL~RQ~l~~~~dvG~~K 87 (531)
T 1tt5_A 8 KLLKEQKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNR 87 (531)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHCEEEEECCSHHHHHHHHHHHTTTCSEEEEECCCBBCHHHHHHCTTCCGGGBTSBH
T ss_pred CCCHHHHHHHHHHHCCHHHHHHHHCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCEECHHHCCCCCCCCHHHCCCHH
T ss_conf 53377776678876299999998469699987688999999999982898599994989223111567057856658689
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCC------HHHCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEE
Q ss_conf 9999999985099738999706787------2000477268970568778999999998639980359942214159999
Q 001747 89 ALASVQKLQELNNAVVLSTLTSKLT------KEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVF 162 (1018)
Q Consensus 89 a~a~~~~L~elNp~v~v~~~~~~l~------~~~l~~~dvVv~~~~~~~~~~~in~~c~~~~~~ipfI~~~~~G~~G~vf 162 (1018)
|++++++|+++||+|+|+++...++ .+++.+||+||+|.++...+..+|++|+.++ +|||.+++.|++|+++
T Consensus 88 a~~a~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~~r~~ln~~c~~~~--iplI~~~~~G~~G~v~ 165 (531)
T 1tt5_A 88 AEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQ--IPLLICRTYGLVGYMR 165 (531)
T ss_dssp HHHHHHHHHTTCTTSBCCEESSCHHHHHHSCGGGGGGCSEEEEESCCHHHHHHHHHHHHHTT--CCEEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCC--CCEEEEEECCCEEEEE
T ss_conf 99999999986899769995787222545068785179989992799999999999999839--9789997547738999
Q ss_pred EECCCCEEEECCCCCCCCC------------EEEEEE-----C----CCCCCEE---ECCCCCCCCCCCC-------CEE
Q ss_conf 6629942796699999952------------133001-----1----6888413---1035554334448-------715
Q 001747 163 CDFGPEFTVVDVDGEDPHT------------GIIASI-----S----NDNPALV---SCVDDERLEFQDG-------DLV 211 (1018)
Q Consensus 163 ~d~g~~f~v~d~~ge~p~~------------~~i~~i-----~----~~~~~~v---~~~~~~~~~l~~g-------d~v 211 (1018)
++++ +|++++.+|+.+.. ..+.++ . ...|+++ ++++..+... +| +.+
T Consensus 166 ~~~p-~~~~~d~~~~~~~~~lr~~~p~P~~~~~~~~~~~~~~~~~~~~~~p~vv~~~~ale~~k~~~-~g~~P~~~~~~~ 243 (531)
T 1tt5_A 166 IIIK-EHPVIESHPDNALEDLRLDKPFPELREHFQSYDLDHMEKKDHSHTPWIVIIAKYLAQWYSET-NGRIPKTYKEKE 243 (531)
T ss_dssp EECS-CEEESCCCCSSCCCCCCSSSCCHHHHHHHHTCC-------CGGGSCHHHHHHHHHHHHTTTT-CCCCCCHHHHHH
T ss_pred EECC-CCEECCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC-CCCCCCCHHHHH
T ss_conf 9828-84121578887898600037999854554226753346787677429999999999999962-898997514678
Q ss_pred EEEEE--ECC----CCCCCC--------------------------CCCCCCC----------------------CCCCE
Q ss_conf 88874--054----345899--------------------------9710134----------------------68730
Q 001747 212 VFSEV--HGM----TELNDG--------------------------KPRKIKS----------------------ARPYS 237 (1018)
Q Consensus 212 ~f~~v--~gm----~~ln~~--------------------------~~~~i~~----------------------~~~~~ 237 (1018)
.|+++ .|| .+.|.. .+.+++. .-|++
T Consensus 244 ~f~~~i~~~~~~~~~e~N~~Ea~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~~~s~~Fwil~~alk~F~~~~~~g~lPl~ 323 (531)
T 1tt5_A 244 DFRDLIRQGILKPEDEENFEEAIKNVNTALNTTQIPSSIEDIFNDDRCINITKQTPSFWILARALKEFVAKEGQGNLPVR 323 (531)
T ss_dssp HHHHHHHHTTSSCTTHHHHHHHHHHHHHHSCCCCCCHHHHHHHTSHHHHSCCSSCCHHHHHHHHHHHHHHTTTTTSCCCC
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 89999986502576420269999999730277667578999852532112567773289999999999874377888877
Q ss_pred EEECCC-CCCCCCEEEC--------------------CEEEEEEC-CE------------------EECCCCHHHHHCCC
Q ss_conf 111255-5654421330--------------------24899617-70------------------30277537753399
Q 001747 238 FTLEED-TTNYGTYVKG--------------------GIVTQVKQ-PK------------------VLNFKPLREALEDP 277 (1018)
Q Consensus 238 f~i~~d-t~~~~~y~~g--------------------g~~~qvk~-p~------------------~~~f~sl~~~L~~p 277 (1018)
+.+ +| ++....|.+. |++++++. |. .+++++|++.+..|
T Consensus 324 g~i-pDm~s~t~~Y~~lq~iy~~ka~~D~~~v~~~v~~~~~~~~~~~~~i~~~~i~~f~kn~~~l~~i~~~~l~~~~~~~ 402 (531)
T 1tt5_A 324 GTI-PDMIADSGKYIKLQNVYREKAKKDAAAVGNHVAKLLQSIGQAPESISEKELKLLCSNSAFLRVVRCRSLAEEYGLD 402 (531)
T ss_dssp CCC-CCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSSSSCHHHHHHHHHTGGGCEEECCCCHHHHHSTT
T ss_pred CCC-CCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCHHHHHCCCCCCHHHHHCCC
T ss_conf 766-7640133213155899999998889999999999988607897767889999998565552011465167664254
Q ss_pred C---CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC---HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 9---72015676689998399999999999998299999999---98999999999999885099987887889999999
Q 001747 278 G---DFLLSDFSKFDRPPPLHLAFQALDKFVSELGRFPVAGS---EEDAQKLISVATNINESLGDGRVEDINTKLLRHFA 351 (1018)
Q Consensus 278 ~---~~~~~d~~k~~~~~~l~~~~~al~~F~~~~gr~P~~~~---~~D~~~l~~l~~~~~~~~~~~~~~~i~~~li~~~~ 351 (1018)
. ..+.+++.+.+++..+|++|||+++|.++|||+|++++ ++|++++.+++.+++.+.+. .+.++++++++++
T Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~f~~~~gr~P~~~~~~~~~D~~~l~~~~~~~~~~~~~--~~~~~~~~~~e~~ 480 (531)
T 1tt5_A 403 TINKDEIISSMDNPDNEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGL--SVMVKDDYVHEFC 480 (531)
T ss_dssp TSCHHHHHHHTTSTTSTHHHHHHHHHHHHHHHHHSSCTTCSTTTHHHHHHHHHHHHHHHHHHHTC--CCCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC--CCCCCHHHHHHHH
T ss_conf 20046666423113651389999999999999868899866554289999999999999874389--6556499999999
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCC
Q ss_conf 612355573134631213456766203984332103552037788
Q 001747 352 FGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLYQFFYFDSVESL 396 (1018)
Q Consensus 352 ~~~~~el~pvaAviGGiaAQEVIK~iTgkf~Pi~q~l~fD~~e~l 396 (1018)
+++++++||||||+||+|||||||+|||||+||+||||||++++.
T Consensus 481 r~~~~el~pvaA~~GGi~AQEviK~iT~q~~Pi~n~~~fDg~~~~ 525 (531)
T 1tt5_A 481 RYGAAEPHTIAAFLGGAAAQEVIKIITKQFVIFNNTYIYSGMSQT 525 (531)
T ss_dssp HTTTCCCHHHHHHHHHHHHHHHHHHHHTCSBCCCSCEEEETTTTE
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCE
T ss_conf 853877378999999999999999974898541655999657762
No 4
>1z7l_A Ubiquitin-activating enzyme E1 1; SCCH, second catalytic cysteine half-domain, ligase; HET: TBR; 2.80A {Mus musculus}
Probab=1.00 E-value=1 Score=540.83 Aligned_cols=269 Identities=41% Similarity=0.743 Sum_probs=244.2
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999643368999803589999998564301592556320179746665532048546778899999985221122
Q 001747 585 DPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSNPVEYTTSMANAGDAQARDNLERVLECLDKEKCE 664 (1018)
Q Consensus 585 ~~~~~~~p~Ct~~~~P~~~~h~i~wAk~~f~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 664 (1018)
....+++|+||+|+||+.++|||+|||++|+++|+..++++|.|+++| .|++.+.+.++.+..+.|+.+++.|...+|.
T Consensus 8 ~~~~ks~P~CTlrsfP~~i~HcI~WAr~lFe~lF~~~~~~~n~~l~dp-~~~~~~~~~~~~~~~~~l~~i~~~L~~~~p~ 86 (276)
T 1z7l_A 8 HEFEKSIPICTLKNFPNAIEHTLQWARDEFEGLFKQPAENVNQYLTDS-KFVERTLRLAGTQPLEVLEAVQRSLVLQRPQ 86 (276)
T ss_dssp ------CCHHHHHTCCCSHHHHHHHHHHHHHHHHTHHHHHHHHHTTCS-HHHHHHHTSSTTHHHHHHHHHHHHHTTTCCS
T ss_pred CCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCH-HHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 547998941136788997047999999999898767887888764080-7788887423014689999999998623887
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 23779999999999999999999763099531135898775589999995224899982057799999999998199999
Q 001747 665 IFQDCITWARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQFSSADPSHLHFVMAASILRAETFGIPIP 744 (1018)
Q Consensus 665 ~~~~ci~~a~~~f~~~F~~~i~~ll~~~p~~~~~~~g~~fWs~~kr~P~pl~fd~~n~~h~~fi~~~a~l~a~~~~i~~~ 744 (1018)
+|++|++|||.+|+++|+++|+|||++||+|++|++|++|||||||+|+||+||.+|++|++||+++|+|+|++|||+..
T Consensus 87 ~~~~c~~~Ar~~F~k~F~~~I~qLL~~fP~D~~t~~G~~fWsg~Kr~P~PL~fd~~~~~h~~fI~aaa~L~A~~~gi~~~ 166 (276)
T 1z7l_A 87 TWGDCVTWACHHWHTQYCNNIRQLLHNFPPDQLTSSGAPFWSGPKRCPHPLTFDVNNTLHLDYVMAAANLFAQTYGLTGS 166 (276)
T ss_dssp SHHHHHHHHHHHHHHHHTHHHHHHHHHSCTTCBCTTSCBSSCSSCCCCCCCCCCTTSHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 48899999999999999789999998488421356787156789989988335987667999999999999998399977
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCC
Q ss_conf 89999678999964137787687788611033001132335747189999999999996514999997687011136898
Q 001747 745 DWTNNPKMLAEAVDKVMVPDFLPKKDAKILTDEKATTLSTASVDDAAVINDLIIKLEQCRKNLPSGFRLKPIQFEKDDDT 824 (1018)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~feKDdd~ 824 (1018)
.+.+.+.++++++.+|+|.|+.++++..+|++.+.++... +.+.++.|.++|..... ..+.++.|++||||||+
T Consensus 167 ---~d~~~i~~~~~~~~vp~f~p~~~~ki~~~e~~~~~~~~~~-~~~~~~~L~~~l~~~~~--~~~~~~~pl~FeKDDd~ 240 (276)
T 1z7l_A 167 ---QDRAAVASLLQSVQVPEFTPKSGVKIHVSDQELQSANASV-DDSRLEELKATLPSPDK--LPGFKMYPIDFEKDDDS 240 (276)
T ss_dssp ---CCHHHHHHHHHTCCCCCCCCCSSCCCCSSSCCC------C-CSHHHHHHHHHSCCGGG--STTCCCCCCCCCSSCTT
T ss_pred ---CCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCHHCCCC-CHHHHHHHHHHHHHHHH--CCCCCCCCCCEECCCCC
T ss_conf ---7999999997457778867765660025332201000333-49999999998523221--14666787311358886
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCC
Q ss_conf 814589999754323416989862878998825656
Q 001747 825 NYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRII 860 (1018)
Q Consensus 825 n~hidFi~aasNlRa~ny~I~~~~~~~~k~iAG~II 860 (1018)
|+|||||+|||||||+||+||++||+++|+||||||
T Consensus 241 N~hmdFItAaSNLRA~nY~I~~~dr~~~K~IAG~II 276 (276)
T 1z7l_A 241 NFHMDFIVAASNLRAENYDISPADRHKSKLIAGKII 276 (276)
T ss_dssp SSHHHHHHHHHHHHHHHTTCCCCCHHHHHHHTTC--
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC
T ss_conf 528999999999899985998678999998817769
No 5
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*
Probab=1.00 E-value=1 Score=494.45 Aligned_cols=322 Identities=32% Similarity=0.468 Sum_probs=274.7
Q ss_pred CCCCHHHHHHHHHHHCCCHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99821455554433114899999853391999949847999999999965998999939935733687543468684475
Q 001747 7 NQTDIDEDLHSRQLAVYGRETMRRLFASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGK 86 (1018)
Q Consensus 7 ~~~~~~~~~YsRQi~~~G~~~q~kL~~s~VlIiG~gglG~EiaknLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk 86 (1018)
..++.+.+|||||+++||.++|++|++++|+|+|+||+|+|++|||+++|||+|+|+|+|.|+.+||+||||++++|+|+
T Consensus 10 ~l~~~~~~rY~Rq~~l~G~~~q~~L~~~~VlivG~GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~ 89 (346)
T 1y8q_A 10 GISEEEAAQYDRQIRLWGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGR 89 (346)
T ss_dssp CCCHHHHHHHHHHHHHHCHHHHHHHHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTS
T ss_pred CCCHHHHHHHHHHHHHHCHHHHHHHHCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHCCCCCCCCCCCCCC
T ss_conf 68989998887888861999999984895999877889999999999859987999989781253188777655201868
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCC---CHHHCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEEE
Q ss_conf 28999999998509973899970678---720004772689705687789999999986399803599422141599996
Q 001747 87 NRALASVQKLQELNNAVVLSTLTSKL---TKEQLSDFQAVVFTDISLDKAIEFDDFCHNHQPAISFIKAEVRGLFGSVFC 163 (1018)
Q Consensus 87 ~ka~a~~~~L~elNp~v~v~~~~~~l---~~~~l~~~dvVv~~~~~~~~~~~in~~c~~~~~~ipfI~~~~~G~~G~vf~ 163 (1018)
+||++++++|+++||+|+|+++...+ .++++++||+||+|.++.+.+..+|++|++++ +|||++++.|++|++|+
T Consensus 90 ~Ka~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~dvVv~~~d~~~~r~~ln~~~~~~~--ip~i~~~~~G~~G~v~~ 167 (346)
T 1y8q_A 90 NRAEASLERAQNLNPMVDVKVDTEDIEKKPESFFTQFDAVCLTCCSRDVIVKVDQICHKNS--IKFFTGDVFGYHGYTFA 167 (346)
T ss_dssp BHHHHHHHHHHHTCTTSEEEEECSCGGGCCHHHHTTCSEEEEESCCHHHHHHHHHHHHHTT--CEEEEEEEEBTEEEEEE
T ss_pred CHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC--CCEEEEEECCCEEEEEE
T ss_conf 8999999999947898089999344571358774589999986899999999999999849--97899960664899999
Q ss_pred ECCCCEEEECCCCC--CCCCEEEEEECCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEC
Q ss_conf 62994279669999--9952133001168884131035554334448715888740543458999710134687301112
Q 001747 164 DFGPEFTVVDVDGE--DPHTGIIASISNDNPALVSCVDDERLEFQDGDLVVFSEVHGMTELNDGKPRKIKSARPYSFTLE 241 (1018)
Q Consensus 164 d~g~~f~v~d~~ge--~p~~~~i~~i~~~~~~~v~~~~~~~~~l~~gd~v~f~~v~gm~~ln~~~~~~i~~~~~~~f~i~ 241 (1018)
|+|+++++.+..|+ .|. ++.. -+++++.++
T Consensus 168 d~~~~~~~~~~~~~~~~p~-------------~~~~------------------------~~~~~~~~~----------- 199 (346)
T 1y8q_A 168 NLGEHEFVEEKTKVAKVSQ-------------GVED------------------------GPDTKRAKL----------- 199 (346)
T ss_dssp ECSEEEEEEECC--------------------------------------------------------------------
T ss_pred ECCCCCEEECCCCCCCCCC-------------CCCC------------------------CCCCCCCCC-----------
T ss_conf 4598887974898767886-------------3014------------------------789876333-----------
Q ss_pred CCCCCCCCEEECCEEEEEECCEEECCCCHHHHHCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHCCCCCC-CCHHH
Q ss_conf 55565442133024899617703027753775339997201567-66899983999999999999982999999-99989
Q 001747 242 EDTTNYGTYVKGGIVTQVKQPKVLNFKPLREALEDPGDFLLSDF-SKFDRPPPLHLAFQALDKFVSELGRFPVA-GSEED 319 (1018)
Q Consensus 242 ~dt~~~~~y~~gg~~~qvk~p~~~~f~sl~~~L~~p~~~~~~d~-~k~~~~~~l~~~~~al~~F~~~~gr~P~~-~~~~D 319 (1018)
|++ ++++.++++.|++|++++..|.. ..++ .+.++++.+|++|+++++|...|||+|.+ ++++|
T Consensus 200 -d~~-----------~~~~~~~~~~f~~l~~~~~~~~~--~~~~~~~~~r~~~~~~~~~al~~f~~~~~~~P~~~~~~~d 265 (346)
T 1y8q_A 200 -DSS-----------ETTMVKKKVVFCPVKEALEVDWS--SEKAKAALKRTTSDYFLLQVLLKFRTDKGRDPSSDTYEED 265 (346)
T ss_dssp ---------------CCCEEEEEEECCCHHHHTSCCSC--SHHHHHHHTTSCTHHHHHHHHHHHHHHSSSCCCGGGHHHH
T ss_pred -CCC-----------CEEEEECEEECCCHHHHHCCCCH--HHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH
T ss_conf -477-----------50787630324179999658701--2244430045407999999999999985889998888889
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
Q ss_conf 999999999998850999878878899999996123555731346312134567662039843321035520377889
Q 001747 320 AQKLISVATNINESLGDGRVEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLYQFFYFDSVESLP 397 (1018)
Q Consensus 320 ~~~l~~l~~~~~~~~~~~~~~~i~~~li~~~~~~~~~el~pvaAviGGiaAQEVIK~iTgkf~Pi~q~l~fD~~e~l~ 397 (1018)
++++.+++.++..+.+.. ...+++++++++ .++++|||||+||++||||||++|+||+||+||||||++++..
T Consensus 266 ~~~l~~~a~~~~~~~~~~-~~~~~~~~~~~~----~~~l~pv~AiiGGi~aQEviK~it~k~~Pl~n~~~fD~~~~~~ 338 (346)
T 1y8q_A 266 SELLLQIRNDVLDSLGIS-PDLLPEDFVRYC----FSEMAPVCAVVGGILAQEIVKALSQRDPPHNNFFFFDGMKGNG 338 (346)
T ss_dssp HHHHHHHHHHHHHTTTCC-GGGSCGGGGGSS----CSBCHHHHHHHHHHHHHHHHHHHHTBSCCCCSEEEEETTTTEE
T ss_pred HHHHHHHHHHHHHHCCCC-CCCCCHHHHHHH----CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCE
T ss_conf 999999999999863998-022799999986----3776589999999999999999558975214589997456624
No 6
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=1.00 E-value=1 Score=478.18 Aligned_cols=359 Identities=26% Similarity=0.452 Sum_probs=295.9
Q ss_pred CHHHHHHHCCHHHHHHH-HCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 00145650279889987-33929999269516999999883275668896279841980244566746676546444039
Q 001747 412 RYDAQISVFGAKLQKKL-EDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAK 490 (1018)
Q Consensus 412 ry~rqi~~~G~~~q~~L-~~~~v~ivG~GgiG~e~lk~La~~Gv~~~~~g~i~iiD~D~ie~sNLnRq~lf~~~diG~~K 490 (1018)
+|...--.+|.+.|+++ ++++|+||||||+||+++++||++|| |+|+|+|+|+|+.|||+|||||+.+|||++|
T Consensus 392 ~~~~~~~~~g~~~~~~~l~~~~vlvvG~GglG~~~~~~L~~~Gv-----g~i~l~D~d~v~~snl~rq~~~~~~~vg~~K 466 (805)
T 2nvu_B 392 PFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGF-----RQIHVIDMDTIDVSNLNRQFLFRPKDIGRPK 466 (805)
T ss_dssp TTSCTTCCCCSHHHHHHHHTCCEEEECCSSHHHHHHHHHHTTTC-----CEEEEEECCBCCGGGGGTCTTCCGGGTTSBH
T ss_pred CCCCCCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHCCC-----CCEEEECCCEECCCCCCCCCCCCHHHCCCHH
T ss_conf 88886567798999998708969998987789999999998489-----9489987983443345546345632267829
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCC------------CCCEE
Q ss_conf 999999998359997699983656876212451101468659998545756999997501235------------42468
Q 001747 491 STVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYF------------QKPLL 558 (1018)
Q Consensus 491 a~va~~~i~~~np~~~i~~~~~~~~~~~~~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~------------~~pli 558 (1018)
+++++++++++||+++|+++..++.+.+ .++++++|+||+|+||+++|+++++.|+.. ++|+|
T Consensus 467 a~~~~~~l~~~np~~~v~~~~~~~~~~~-----~~~~~~~d~vv~~~d~~~~r~~in~~~~~~~~~~~g~~~~~~~~p~i 541 (805)
T 2nvu_B 467 AEVAAEFLNDRVPNCNVVPHFNKIQDFN-----DTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLI 541 (805)
T ss_dssp HHHHHHHHHHHSTTCEEEEEESCGGGSC-----HHHHHTCSEEEECCSCHHHHHHHHHHHHHTCCEETTEECGGGCCCEE
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCH-----HHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEE
T ss_conf 9999999997789977999955556517-----88974399999998997999999999999763024432202477579
Q ss_pred ECCCCCCCCCEEEEECCCCCCCCCCC--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHH
Q ss_conf 52667732201899175455446788--9999999964336899980358999999856430159255632017974666
Q 001747 559 ESGTLGAKCNTQMVIPHLTENYGASR--DPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSNPVEYT 636 (1018)
Q Consensus 559 ~~g~~g~~g~~~v~~p~~t~~y~~~~--~~~~~~~p~Ct~~~~P~~~~h~i~wAk~~f~~~f~~~~~~~~~~l~~~~~~~ 636 (1018)
++|+.|+.|++.+++|+.|+||.|.. .|+....|.|+++++|+.++|||+||+...
T Consensus 542 ~~~~~g~~G~~~~~~p~~~~c~~c~~~~~p~~~~~~~c~~~~~~~~~~~~i~~a~~~~---------------------- 599 (805)
T 2nvu_B 542 DGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQ---------------------- 599 (805)
T ss_dssp EEEEETTEEEEEEECTTTSCCTTTSGGGSCCCCCCCHHHHHHCCCSHHHHHHHHHHTH----------------------
T ss_pred EECCCCCCEEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH----------------------
T ss_conf 9325667326889889998760046777898777875536789999507999999864----------------------
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 55320485467788999999852211222377999999999999999999976309953113589877558999999522
Q 001747 637 TSMANAGDAQARDNLERVLECLDKEKCEIFQDCITWARLKFEDYFSNRVKQLIFTFPEDAATSTGAPFWSAPKRFPHPLQ 716 (1018)
Q Consensus 637 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ci~~a~~~f~~~F~~~i~~ll~~~p~~~~~~~g~~fWs~~kr~P~pl~ 716 (1018)
|.. . + |.
T Consensus 600 -----------------------------------~~~-----~-----------------------------~-~~--- 606 (805)
T 2nvu_B 600 -----------------------------------WPK-----E-----------------------------Q-PF--- 606 (805)
T ss_dssp -----------------------------------HHH-----H-----------------------------C-TT---
T ss_pred -----------------------------------CCC-----C-----------------------------C-CC---
T ss_conf -----------------------------------301-----1-----------------------------5-99---
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 48999820577999999999981999998999967899996413778768778861103300113233574718999999
Q 001747 717 FSSADPSHLHFVMAASILRAETFGIPIPDWTNNPKMLAEAVDKVMVPDFLPKKDAKILTDEKATTLSTASVDDAAVINDL 796 (1018)
Q Consensus 717 fd~~n~~h~~fi~~~a~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1018)
T Consensus 607 -------------------------------------------------------------------------------- 606 (805)
T 2nvu_B 607 -------------------------------------------------------------------------------- 606 (805)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99999965149999976870111368988145899997543234169898628789988256563135667899999999
Q 001747 797 IIKLEQCRKNLPSGFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCL 876 (1018)
Q Consensus 797 ~~~l~~~~~~~~~~~~~~~~~feKDdd~n~hidFi~aasNlRa~ny~I~~~~~~~~k~iAG~IIPAIaTTtA~Vagl~~l 876 (1018)
..|+.|++||.. |++||++.+|+||..|+|+..+++.+++++|+||||||||||+|+|++++
T Consensus 607 ----------------~~~~~~d~~~~~--~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~i~p~i~~~~aiig~~~a~ 668 (805)
T 2nvu_B 607 ----------------GEGVPLDGDDPE--HIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCAT 668 (805)
T ss_dssp ----------------STTCCCCTTCHH--HHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHTCCCCCHHHHHHHHHHHHH
T ss_pred ----------------CCCCCCCCCCHH--HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf ----------------876667899789--99999999999999859997679999987535325521089999999999
Q ss_pred HHHHHHCCCC-CCCCCCCCCCCCCCCCC-CCC-CCCCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHC---CCCEE
Q ss_conf 9999850899-85422100012345742-356-899985432377520278689709988699999999984---99211
Q 001747 877 ELYKVLDGGH-KLEDYRNTFANLALPLF-SMA-EPVPPKVIKHRDMSWTVWDRWILKDNPTLRELIQWLKDK---GLNAY 950 (1018)
Q Consensus 877 El~K~l~~~~-~~~~~rn~f~nla~p~~-~~~-ep~~~~~~~~~~~~~t~wd~~~i~~~~TL~~li~~~~~~---~l~~~ 950 (1018)
|++|++.+.. ++..+. .|-.+....+ .+. ++.|.|. .++ +.|+++.+..++||++|++++.++ +++.+
T Consensus 669 e~ik~l~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~C~--~C~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (805)
T 2nvu_B 669 EVFKIATSAYIPLNNYL-VFNDVDGLYTYTFEAERKENCP--ACS---QLPQNIQFSPSAKLQEVLDYLTNSASLQMKSP 742 (805)
T ss_dssp HHHHHHHCSSCCCCSEE-EEECSBSCEEEEECCCCCTTCT--TTS---CCCEEEEECTTSBHHHHHHHHHHCTTTCCSSC
T ss_pred HHHHHHHCCCCCCCCEE-EECCCCCCCCCCCCCCCCCCCC--EEC---CEEEEEEECCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 99999743564667327-7637877422234678899997--007---64589998886719999999986214474364
Q ss_pred EEEC----CCCEEECCCCCC----HHCCCCCCHHHHH
Q ss_conf 2103----983123378965----0101369189998
Q 001747 951 SISC----GSCLLFNSMFPR----HKERMDKKVVDLA 979 (1018)
Q Consensus 951 ~i~~----g~~~ly~~~~~~----~~~~l~~~l~~l~ 979 (1018)
||++ |+++||++++|+ +++||+|+|+||.
T Consensus 743 ~~~~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~ 779 (805)
T 2nvu_B 743 AITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELG 779 (805)
T ss_dssp EEEEEETTEEEEEECCSSHHHHHHHGGGGGSBTTTTT
T ss_pred EEEEECCCCCCEEEECCCCCHHHHHHHHHCCCHHHCC
T ss_conf 6777706898689962763201455765128998819
No 7
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*
Probab=1.00 E-value=1 Score=477.81 Aligned_cols=360 Identities=27% Similarity=0.474 Sum_probs=292.9
Q ss_pred CCHHHHHHHCCHH-------------HH-HHHHCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCC
Q ss_conf 8001456502798-------------89-987339299992695169999998832756688962798419802445667
Q 001747 411 SRYDAQISVFGAK-------------LQ-KKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLS 476 (1018)
Q Consensus 411 ~ry~rqi~~~G~~-------------~q-~~L~~~~v~ivG~GgiG~e~lk~La~~Gv~~~~~g~i~iiD~D~ie~sNLn 476 (1018)
.||+++-.+++.+ .+ ..|++++|+||||||+||+++++||++|| |+|+|+|+|+|+.|||+
T Consensus 7 ~r~~~vntl~~~~g~~~g~gf~~g~e~~~~~L~~~~VlvvG~GGlGs~va~~La~aGv-----g~i~ivD~D~Ve~sNL~ 81 (434)
T 1tt5_B 7 GRWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGF-----RQIHVIDMDTIDVSNLN 81 (434)
T ss_dssp TTTHHHHHHHHSCCSSCCTTCCCCSSHHHHHHHTCCEEEECSSTHHHHHHHHHHHTTC-----CCEEEEECCBCCGGGTT
T ss_pred HHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCC-----CEEEEECCCEECHHCCC
T ss_conf 6610215997679850466544488899988659979998968999999999998699-----97999819880631067
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCC---
Q ss_conf 46676546444039999999998359997699983656876212451101468659998545756999997501235---
Q 001747 477 RQFLFRDWNIGQAKSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYF--- 553 (1018)
Q Consensus 477 Rq~lf~~~diG~~Ka~va~~~i~~~np~~~i~~~~~~~~~~~~~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~--- 553 (1018)
|||||+.+|||++|+++++++++++||+++|+++..++.+.+ .++++++|+|++|+||+++|+++++.|+..
T Consensus 82 RQ~l~~~~diG~~Ka~~a~~~l~~lnp~v~v~~~~~~i~~~~-----~~~~~~~DlVi~~~Dn~~~R~~in~~c~~~~~~ 156 (434)
T 1tt5_B 82 RQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFN-----DTFYRQFHIIVCGLDSIIARRWINGMLISLLNY 156 (434)
T ss_dssp TCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEEESCGGGBC-----HHHHTTCSEEEECCSCHHHHHHHHHHHHHTCCB
T ss_pred CCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHH-----HHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHC
T ss_conf 773788367683999999999984689977999945555136-----887457999999889989999999999985412
Q ss_pred ---------CCCEEECCCCCCCCCEEEEECCCCCCCCCCCC--CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCH
Q ss_conf ---------42468526677322018991754554467889--9999999643368999803589999998564301592
Q 001747 554 ---------QKPLLESGTLGAKCNTQMVIPHLTENYGASRD--PPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTP 622 (1018)
Q Consensus 554 ---------~~pli~~g~~g~~g~~~v~~p~~t~~y~~~~~--~~~~~~p~Ct~~~~P~~~~h~i~wAk~~f~~~f~~~~ 622 (1018)
++|+|++|+.|+.|++.+++|+.|+||.|..+ |+++..|.|+++++|+.++|||+||+...
T Consensus 157 ~~g~~~~~~~iPli~~~~~g~~G~v~v~~p~~t~Cy~C~~~~~p~~~~~p~Ct~~~~p~~~~h~i~~a~~i~-------- 228 (434)
T 1tt5_B 157 EDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQ-------- 228 (434)
T ss_dssp SSSCBCGGGCCCEEEEEEETTEEEEEEECTTTSCCGGGGGGGSCCCCCCCHHHHHHCCCSHHHHHHHHHHTH--------
T ss_pred CCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH--------
T ss_conf 454210014984798102563037999888998971325677898677764212467766068899998877--------
Q ss_pred HHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 55632017974666553204854677889999998522112223779999999999999999999763099531135898
Q 001747 623 AEVNAYLSNPVEYTTSMANAGDAQARDNLERVLECLDKEKCEIFQDCITWARLKFEDYFSNRVKQLIFTFPEDAATSTGA 702 (1018)
Q Consensus 623 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ci~~a~~~f~~~F~~~i~~ll~~~p~~~~~~~g~ 702 (1018)
|..
T Consensus 229 -------------------------------------------------~~~---------------------------- 231 (434)
T 1tt5_B 229 -------------------------------------------------WPK---------------------------- 231 (434)
T ss_dssp -------------------------------------------------HHH----------------------------
T ss_pred -------------------------------------------------HHH----------------------------
T ss_conf -------------------------------------------------765----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCC
Q ss_conf 77558999999522489998205779999999999819999989999678999964137787687788611033001132
Q 001747 703 PFWSAPKRFPHPLQFSSADPSHLHFVMAASILRAETFGIPIPDWTNNPKMLAEAVDKVMVPDFLPKKDAKILTDEKATTL 782 (1018)
Q Consensus 703 ~fWs~~kr~P~pl~fd~~n~~h~~fi~~~a~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 782 (1018)
++ |.
T Consensus 232 ------~~-~~--------------------------------------------------------------------- 235 (434)
T 1tt5_B 232 ------EQ-PF--------------------------------------------------------------------- 235 (434)
T ss_dssp ------SC-TT---------------------------------------------------------------------
T ss_pred ------HC-CC---------------------------------------------------------------------
T ss_conf ------23-56---------------------------------------------------------------------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCH
Q ss_conf 33574718999999999999651499999768701113689881458999975432341698986287899882565631
Q 001747 783 STASVDDAAVINDLIIKLEQCRKNLPSGFRLKPIQFEKDDDTNYHMDMIAGLANMRARNYSIPEVDKLKAKFIAGRIIPA 862 (1018)
Q Consensus 783 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~feKDdd~n~hidFi~aasNlRa~ny~I~~~~~~~~k~iAG~IIPA 862 (1018)
..|+.||+||+. |++||++.+|.||..|+|+.++++.+++++|+||||
T Consensus 236 ------------------------------~~~~~~d~d~~~--~~~~v~~~a~~~~~~~gi~~~~~~~~~gv~~~iipa 283 (434)
T 1tt5_B 236 ------------------------------GEGVPLDGDDPE--HIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPA 283 (434)
T ss_dssp ------------------------------CTTCCCCTTCHH--HHHHHHHHHHHHHHHTTCCCCCHHHHHHHHTTCCCC
T ss_pred ------------------------------CCCCCCCCCCHH--HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCC
T ss_conf ------------------------------553345777477--899999999888987298866899998676146764
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCC-CCC-CCCCCCCCCCCCCCEEEEEEEEECCCCCHHHHH
Q ss_conf 356678999999999999850899-85422100012345742-356-899985432377520278689709988699999
Q 001747 863 IATSTAMATGLVCLELYKVLDGGH-KLEDYRNTFANLALPLF-SMA-EPVPPKVIKHRDMSWTVWDRWILKDNPTLRELI 939 (1018)
Q Consensus 863 IaTTtA~Vagl~~lEl~K~l~~~~-~~~~~rn~f~nla~p~~-~~~-ep~~~~~~~~~~~~~t~wd~~~i~~~~TL~~li 939 (1018)
||||||+|+|++++|++|++.+.. ++..+. .|..+....+ .+. ++.|.+.. ++ +.|+++.+..+.||++|+
T Consensus 284 ia~t~aiig~l~a~EaiK~l~g~~~~l~~~l-~~d~~~~~~~~~~~~~~~~~C~v--C~---~~~~~~~~~~~~tl~~~~ 357 (434)
T 1tt5_B 284 VASTNAVIAAVCATEVFKIATSAYIPLNNYL-VFNDVDGLYTYTFEAERKENCPA--CS---QLPQNIQFSPSAKLQEVL 357 (434)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTCSCCCCSEE-EEECSBSCEEEEECCCCCTTCTT--TC---SSCBCCCC-----CTTHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCCEE-EEECCCCCEEEEEECCCCCCCCC--CC---CCCCEEEECCCCCHHHHH
T ss_conf 3427999999999999999838986557649-99737786467872367999884--48---887269988876389999
Q ss_pred HHHHHC---CCCEEEEEC----CCCEEECCCCC----CHHCCCCCCHHHHH
Q ss_conf 999984---992112103----98312337896----50101369189998
Q 001747 940 QWLKDK---GLNAYSISC----GSCLLFNSMFP----RHKERMDKKVVDLA 979 (1018)
Q Consensus 940 ~~~~~~---~l~~~~i~~----g~~~ly~~~~~----~~~~~l~~~l~~l~ 979 (1018)
+++.++ +++.+||++ |+++||++++| ++++||+|+|+||.
T Consensus 358 ~~l~~~~~~~~~~~~is~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~ 408 (434)
T 1tt5_B 358 DYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELG 408 (434)
T ss_dssp HHHHHCSSCCCSSCCCEET----TEECCCCCCTTTTTTSCC-CCC-----C
T ss_pred HHHHCCCCCCEECCEEEEECCCCCCEEEECCCCCHHHHHHHHHCCCHHHCC
T ss_conf 998566765317557888806898589962774211455766138998818
No 8
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*
Probab=1.00 E-value=1 Score=317.91 Aligned_cols=192 Identities=22% Similarity=0.337 Sum_probs=173.4
Q ss_pred CCCHHHHHHHCCHHHHHHHHCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 58001456502798899873392999926951699999988327566889627984198024456674667654644403
Q 001747 410 NSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQA 489 (1018)
Q Consensus 410 ~~ry~rqi~~~G~~~q~~L~~~~v~ivG~GgiG~e~lk~La~~Gv~~~~~g~i~iiD~D~ie~sNLnRq~lf~~~diG~~ 489 (1018)
..||+||+++||.++|++|++++|+||||||+||+++++||++|| |+|+|+|+|+|+.|||+||||++.+|||++
T Consensus 12 ~~rY~Rqi~l~G~~~q~~L~~~~VlvvG~GGlGseiak~La~aGV-----g~itlvD~D~Ve~sNL~RQ~l~~~~dvG~~ 86 (531)
T 1tt5_A 12 EQKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGI-----GSFTIIDGNQVSGEDAGNNFFLQRSSIGKN 86 (531)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHCEEEEECCSHHHHHHHHHHHTTTC-----SEEEEECCCBBCHHHHHHCTTCCGGGBTSB
T ss_pred HHHHHHHHHHCCHHHHHHHHCCEEEEECCCHHHHHHHHHHHHCCC-----CEEEEEECCEECHHHCCCCCCCCHHHCCCH
T ss_conf 777667887629999999846969998768899999999998289-----859999498922311156705785665868
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCE
Q ss_conf 99999999983599976999836568762124511014686599985457569999975012354246852667732201
Q 001747 490 KSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNT 569 (1018)
Q Consensus 490 Ka~va~~~i~~~np~~~i~~~~~~~~~~~~~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~pli~~g~~g~~g~~ 569 (1018)
||++++++++++||+++|.++...+.+..+ ...++++++|+||+|+||..+|.++++.|+.+++|+|++|+.|+.|++
T Consensus 87 Ka~~a~~~l~~lNp~v~v~~~~~~~~~~~~--~~~~~~~~~DvVi~~~d~~~~r~~ln~~c~~~~iplI~~~~~G~~G~v 164 (531)
T 1tt5_A 87 RAEAAMEFLQELNSDVSGSFVEESPENLLD--NDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIPLLICRTYGLVGYM 164 (531)
T ss_dssp HHHHHHHHHHTTCTTSBCCEESSCHHHHHH--SCGGGGGGCSEEEEESCCHHHHHHHHHHHHHTTCCEEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCHHHH--HHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCEEEE
T ss_conf 999999999986899769995787222545--068785179989992799999999999999839978999754773899
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 899175455446788999999996433689998035899999
Q 001747 570 QMVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWAR 611 (1018)
Q Consensus 570 ~v~~p~~t~~y~~~~~~~~~~~p~Ct~~~~P~~~~h~i~wAk 611 (1018)
.+++|. ..++.+ +|++...++|++++||..++||-.++-
T Consensus 165 ~~~~p~-~~~~d~--~~~~~~~~lr~~~p~P~~~~~~~~~~~ 203 (531)
T 1tt5_A 165 RIIIKE-HPVIES--HPDNALEDLRLDKPFPELREHFQSYDL 203 (531)
T ss_dssp EEECSC-EEESCC--CCSSCCCCCCSSSCCHHHHHHHHTCC-
T ss_pred EEECCC-CEECCC--CCCCCCCCCCCCCCCCCCHHHHHCCCC
T ss_conf 998288-412157--888789860003799985455422675
No 9
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=1.00 E-value=1 Score=296.47 Aligned_cols=281 Identities=17% Similarity=0.211 Sum_probs=213.9
Q ss_pred HHHHHHCCCHHHHHHH-HCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 5443311489999985-339199994984799999999996599899993993573368754346868447528999999
Q 001747 16 HSRQLAVYGRETMRRL-FASNILVSGMQGLGAEIAKNLILAGVKSVTLHDEGTVELWDLSSNFVFSDNDIGKNRALASVQ 94 (1018)
Q Consensus 16 YsRQi~~~G~~~q~kL-~~s~VlIiG~gglG~EiaknLvlaGVg~itlvD~d~v~~~dL~~qf~~~~~diGk~ka~a~~~ 94 (1018)
|...-+.+|.++|+++ ++++|+|+|+||+|+++++||+++|||+|+|+|+|.|+.+||+|||+++++|+|++||+++++
T Consensus 393 ~~~~~~~~g~~~~~~~l~~~~vlvvG~GglG~~~~~~L~~~Gvg~i~l~D~d~v~~snl~rq~~~~~~~vg~~Ka~~~~~ 472 (805)
T 2nvu_B 393 FTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAE 472 (805)
T ss_dssp TSCTTCCCCSHHHHHHHHTCCEEEECCSSHHHHHHHHHHTTTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCEECCCCCCCCCCCCHHHCCCHHHHHHHH
T ss_conf 88865677989999987089699989877899999999984899489987983443345546345632267829999999
Q ss_pred HHHHHCCCCEEEEEECCCC---HHHCCCCCEEEECCCCHHHHHHHHHHHHH------------CCCCCEEEEEEECCEEE
Q ss_conf 9985099738999706787---20004772689705687789999999986------------39980359942214159
Q 001747 95 KLQELNNAVVLSTLTSKLT---KEQLSDFQAVVFTDISLDKAIEFDDFCHN------------HQPAISFIKAEVRGLFG 159 (1018)
Q Consensus 95 ~L~elNp~v~v~~~~~~l~---~~~l~~~dvVv~~~~~~~~~~~in~~c~~------------~~~~ipfI~~~~~G~~G 159 (1018)
+|+++||.|+|+.+...++ .+++.+||+||+|.++.+.|..+|++|+. ++ +|||.+++.|+.|
T Consensus 473 ~l~~~np~~~v~~~~~~~~~~~~~~~~~~d~vv~~~d~~~~r~~in~~~~~~~~~~~g~~~~~~~--~p~i~~~~~g~~G 550 (805)
T 2nvu_B 473 FLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSI--VPLIDGGTEGFKG 550 (805)
T ss_dssp HHHHHSTTCEEEEEESCGGGSCHHHHHTCSEEEECCSCHHHHHHHHHHHHHTCCEETTEECGGGC--CCEEEEEEETTEE
T ss_pred HHHHHCCCCEEEEEECCCCCCHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC--CCEEEECCCCCCE
T ss_conf 99977899779999555565178897439999999899799999999999976302443220247--7579932566732
Q ss_pred EEEEECCCCEEEECCCCCCCCCEEEEEECCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 99966299427966999999521330011688841310355543344487158887405434589997101346873011
Q 001747 160 SVFCDFGPEFTVVDVDGEDPHTGIIASISNDNPALVSCVDDERLEFQDGDLVVFSEVHGMTELNDGKPRKIKSARPYSFT 239 (1018)
Q Consensus 160 ~vf~d~g~~f~v~d~~ge~p~~~~i~~i~~~~~~~v~~~~~~~~~l~~gd~v~f~~v~gm~~ln~~~~~~i~~~~~~~f~ 239 (1018)
++++..+..-.+ +.+.. + . .|..
T Consensus 551 ~~~~~~p~~~~c--------~~c~~-----------------------------------~-~---~p~~---------- 573 (805)
T 2nvu_B 551 NARVILPGMTAC--------IECTL-----------------------------------E-L---YPPQ---------- 573 (805)
T ss_dssp EEEEECTTTSCC--------TTTSG-----------------------------------G-G---SCCC----------
T ss_pred EEEEECCCCCCC--------EECCC-----------------------------------C-C---CCCC----------
T ss_conf 688988999876--------00467-----------------------------------7-7---8987----------
Q ss_pred ECCCCCCCCCEEECCEEEEEECCEEECCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC---C-CCC
Q ss_conf 125556544213302489961770302775377533999720156766899983999999999999982999---9-999
Q 001747 240 LEEDTTNYGTYVKGGIVTQVKQPKVLNFKPLREALEDPGDFLLSDFSKFDRPPPLHLAFQALDKFVSELGRF---P-VAG 315 (1018)
Q Consensus 240 i~~dt~~~~~y~~gg~~~qvk~p~~~~f~sl~~~L~~p~~~~~~d~~k~~~~~~l~~~~~al~~F~~~~gr~---P-~~~ 315 (1018)
.....+++....+.| ...+..+.+.+. ...+..- + ...
T Consensus 574 -----------------------~~~~~c~~~~~~~~~-------------~~~i~~a~~~~~--~~~~~~~~~~~~d~~ 615 (805)
T 2nvu_B 574 -----------------------VNFPMCTIASMPRLP-------------EHCIEYVRMLQW--PKEQPFGEGVPLDGD 615 (805)
T ss_dssp -----------------------CCCCHHHHHHCCCSH-------------HHHHHHHHHTHH--HHHCTTSTTCCCCTT
T ss_pred -----------------------CCCCCCCCCCCCCCC-------------CHHHHHHHHHHC--CCCCCCCCCCCCCCC
T ss_conf -----------------------778755367899995-------------079999998643--011599876667899
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
Q ss_conf 99899999999999988509998788788999999961235557313463121345676620398433210355203778
Q 001747 316 SEEDAQKLISVATNINESLGDGRVEDINTKLLRHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLYQFFYFDSVES 395 (1018)
Q Consensus 316 ~~~D~~~l~~l~~~~~~~~~~~~~~~i~~~li~~~~~~~~~el~pvaAviGGiaAQEVIK~iTgkf~Pi~q~l~fD~~e~ 395 (1018)
+.++.+.+.+.++......+. ..++...+..++....+.++|++|++||+.|||+||++||+..|++|+++||+..+
T Consensus 616 ~~~~~~~~~~~~~~~~~~~gi---~~~~~~~~~~~~~~i~p~i~~~~aiig~~~a~e~ik~l~~~~~~l~~~~~~~~~~~ 692 (805)
T 2nvu_B 616 DPEHIQWIFQKSLERASQYNI---RGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDG 692 (805)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC---CCCCHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHCSSCCCCSEEEEECSBS
T ss_pred CHHHHHHHHHHHHHHHHHHCC---CCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCC
T ss_conf 789999999999999998599---97679999987535325521089999999999999997435646673277637877
Q ss_pred C
Q ss_conf 8
Q 001747 396 L 396 (1018)
Q Consensus 396 l 396 (1018)
.
T Consensus 693 ~ 693 (805)
T 2nvu_B 693 L 693 (805)
T ss_dssp C
T ss_pred C
T ss_conf 4
No 10
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*
Probab=1.00 E-value=1 Score=294.54 Aligned_cols=165 Identities=24% Similarity=0.385 Sum_probs=154.1
Q ss_pred CCCHHHHHHHCCHHHHHHHHCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 58001456502798899873392999926951699999988327566889627984198024456674667654644403
Q 001747 410 NSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQA 489 (1018)
Q Consensus 410 ~~ry~rqi~~~G~~~q~~L~~~~v~ivG~GgiG~e~lk~La~~Gv~~~~~g~i~iiD~D~ie~sNLnRq~lf~~~diG~~ 489 (1018)
..||+||+++||.++|++|++++|+|+|+||+||+++++|+++|| |+|+|+|+|.|+.|||+||||++.+|||++
T Consensus 16 ~~rY~Rq~~l~G~~~q~~L~~~~VlivG~GGlG~~ia~~La~~Gv-----g~itlvD~d~V~~sNL~rq~~~~~~diG~~ 90 (346)
T 1y8q_A 16 AAQYDRQIRLWGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGV-----KGLTMLDHEQVTPEDPGAQFLIRTGSVGRN 90 (346)
T ss_dssp HHHHHHHHHHHCHHHHHHHHTCEEEEECCSHHHHHHHHHHHHHTC-----SEEEEECCCBCCSSCGGGCTTSCSSCTTSB
T ss_pred HHHHHHHHHHHCHHHHHHHHCCEEEEECCCHHHHHHHHHHHHCCC-----CEEEEEECCCCCHHHCCCCCCCCCCCCCCC
T ss_conf 988878888619999999848959998778899999999998599-----879999897812531887776552018688
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCE
Q ss_conf 99999999983599976999836568762124511014686599985457569999975012354246852667732201
Q 001747 490 KSTVAASAATSINPRLNIEALQNRVGPETENVFDDTFWENITCVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNT 569 (1018)
Q Consensus 490 Ka~va~~~i~~~np~~~i~~~~~~~~~~~~~~~~~~~~~~~DvVi~alDn~~ar~~i~~~c~~~~~pli~~g~~g~~g~~ 569 (1018)
|+++++++++++||+++|.++...+.+. .+++++++|+||+|+|+.++|.++++.|+.+++|+|.+++.|+.|++
T Consensus 91 Ka~~~~~~l~~lnp~v~v~~~~~~~~~~-----~~~~~~~~dvVv~~~d~~~~r~~ln~~~~~~~ip~i~~~~~G~~G~v 165 (346)
T 1y8q_A 91 RAEASLERAQNLNPMVDVKVDTEDIEKK-----PESFFTQFDAVCLTCCSRDVIVKVDQICHKNSIKFFTGDVFGYHGYT 165 (346)
T ss_dssp HHHHHHHHHHHTCTTSEEEEECSCGGGC-----CHHHHTTCSEEEEESCCHHHHHHHHHHHHHTTCEEEEEEEEBTEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEEECCCCCC-----HHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCEEEE
T ss_conf 9999999999478980899993445713-----58774589999986899999999999999849978999606648999
Q ss_pred EEEECCCCCCCCCCCC
Q ss_conf 8991754554467889
Q 001747 570 QMVIPHLTENYGASRD 585 (1018)
Q Consensus 570 ~v~~p~~t~~y~~~~~ 585 (1018)
.+.++ ...|+.|..+
T Consensus 166 ~~d~~-~~~~~~~~~~ 180 (346)
T 1y8q_A 166 FANLG-EHEFVEEKTK 180 (346)
T ss_dssp EEECS-EEEEEEECC-
T ss_pred EEECC-CCCEEECCCC
T ss_conf 99459-8887974898
Done!