Your job contains 1 sequence.
>001748
MEGRRHSVDIPISRTLIALRRVRSLRDPSTNSMSKFSALLDNVNWETNSSNGISSRFDNG
CKGLFESESLSINGLKKEKDDDLELHCGLDNSKFMSFQNLGWIDTDNPNLIKQVDRLDNY
QSKEEEVDGHESLGERRCINHLNREFDMCCSMPYSQPMEDVGFCKGPNVGSSSMEDIDQS
ASIWKLQYKNEGRLCGAANGGASRVSTPCPSISEIMANHSRSLFANEEIDVNQSHHGCGL
SCCWSRTPRSRQSNLSSDLEDNPLLSGEIGETAHYGRSGHKLINNEISTYSETPWSLSQK
FRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLED
QKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQ
LLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRR
ICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVSDDELL
DLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARKNFFG
KHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVALLQLSSSESSLDLNDSKLCLRY
AHDKDGDSHCTISPRDSFKHLVRGSCVGDKANKLGALEDYKGTLESIWKTATELCQSNSL
KTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKSWKLIASTLQSVLGCNVEIRLLC
APVSAKENKPSFSLFSCSRWVQQSRSTTERETDSDYSDYFSEKPMIRARHTLTCSSDCGS
QMSHNCCHKTDVVRALRSSEGNVLSTGTVSFHRSIQDDISRSAGCEISSLNRNDYYCQVL
SPQEPETQPSCFPRTLRLQKKLRASDTSEMVCTSNKLALSIPKKTSFDTYISVDDPHVFY
GSSNYHHSSVRDEDGPQENSDVLCWRTPTFPLKKAGQMAHQRKRSNIMDCILPCTNAK
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 001748
(1018 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2121934 - symbol:AT4G24790 species:3702 "Arabi... 1560 2.7e-192 4
TAIR|locus:2065299 - symbol:STI "STICHEL" species:3702 "A... 852 5.4e-102 4
TAIR|locus:2012497 - symbol:AT1G14460 species:3702 "Arabi... 831 2.1e-101 4
TAIR|locus:2172013 - symbol:AT5G45720 species:3702 "Arabi... 784 1.4e-84 3
UNIPROTKB|Q97RF7 - symbol:dnaX "DNA polymerase III, gamma... 428 7.2e-41 2
UNIPROTKB|P09122 - symbol:dnaX "DNA polymerase III subuni... 426 6.4e-39 1
TIGR_CMR|CHY_2675 - symbol:CHY_2675 "putative DNA polymer... 423 1.4e-38 1
TIGR_CMR|CJE_1293 - symbol:CJE_1293 "DNA polymerase III, ... 412 2.1e-37 1
TIGR_CMR|GSU_0094 - symbol:GSU_0094 "DNA polymerase III, ... 416 1.1e-36 1
TIGR_CMR|CBU_0659 - symbol:CBU_0659 "DNA polymerase III, ... 403 1.9e-36 1
UNIPROTKB|Q2GDS0 - symbol:NSE_0492 "Putative DNA polymera... 400 4.0e-36 1
TIGR_CMR|NSE_0492 - symbol:NSE_0492 "putative DNA polymer... 400 4.0e-36 1
TIGR_CMR|DET_0585 - symbol:DET_0585 "DNA polymerase III, ... 395 9.1e-36 2
TIGR_CMR|APH_1348 - symbol:APH_1348 "DNA polymerase III, ... 379 7.1e-34 1
TIGR_CMR|ECH_0014 - symbol:ECH_0014 "DNA polymerase III, ... 377 1.2e-33 1
TIGR_CMR|BA_0019 - symbol:BA_0019 "DNA polymerase III, ga... 387 3.7e-33 1
TIGR_CMR|SO_2013 - symbol:SO_2013 "DNA polymerase III, ga... 391 1.1e-31 2
UNIPROTKB|O83970 - symbol:TP_1005 "DNA polymerase III, su... 372 2.7e-31 1
UNIPROTKB|Q47XQ9 - symbol:dnaX "DNA polymerase III, gamma... 375 3.9e-31 1
TIGR_CMR|CPS_3744 - symbol:CPS_3744 "DNA polymerase III, ... 375 3.9e-31 1
TIGR_CMR|SPO_3550 - symbol:SPO_3550 "DNA polymerase III, ... 365 2.0e-30 1
UNIPROTKB|Q9KT51 - symbol:VC_1054 "DNA polymerase III, su... 365 4.5e-30 1
TIGR_CMR|VC_1054 - symbol:VC_1054 "DNA polymerase III, su... 365 4.5e-30 1
UNIPROTKB|P06710 - symbol:dnaX species:83333 "Escherichia... 355 4.3e-29 1
UNIPROTKB|P63975 - symbol:dnaX "DNA polymerase III subuni... 353 4.3e-29 1
UNIPROTKB|Q0C591 - symbol:dnaX "DNA polymerase III, subun... 329 2.1e-26 1
UNIPROTKB|E7DN81 - symbol:E7DN81 "DnaX DNA polymerase III... 181 1.8e-19 2
UNIPROTKB|F1NIY0 - symbol:RFC4 "Uncharacterized protein" ... 206 1.8e-13 1
UNIPROTKB|F1NEW1 - symbol:RFC4 "Uncharacterized protein" ... 206 1.9e-13 1
GENEDB_PFALCIPARUM|PFB0840w - symbol:PFB0840w "replicatio... 183 5.3e-11 1
UNIPROTKB|O96260 - symbol:PFB0840w "Replication factor C,... 183 5.3e-11 1
UNIPROTKB|F1SFI3 - symbol:RFC4 "Uncharacterized protein" ... 183 7.7e-11 1
TIGR_CMR|DET_0535 - symbol:DET_0535 "DNA polymerase III, ... 181 1.0e-10 1
CGD|CAL0003213 - symbol:RCF3 species:5476 "Candida albica... 181 1.2e-10 1
UNIPROTKB|E2R2M6 - symbol:RFC4 "Uncharacterized protein" ... 181 1.3e-10 1
UNIPROTKB|P35249 - symbol:RFC4 "Replication factor C subu... 181 1.3e-10 1
RGD|1310142 - symbol:Rfc4 "replication factor C (activato... 181 1.3e-10 1
MGI|MGI:2146571 - symbol:Rfc4 "replication factor C (acti... 180 1.7e-10 1
ZFIN|ZDB-GENE-040824-3 - symbol:rfc4 "replication factor ... 178 2.6e-10 1
DICTYBASE|DDB_G0286027 - symbol:rfc4 "replication factor ... 170 1.9e-09 1
ZFIN|ZDB-GENE-040907-1 - symbol:rfc5 "replication factor ... 127 2.1e-09 2
UNIPROTKB|C9JZI1 - symbol:RFC4 "Replication factor C subu... 168 2.8e-09 1
WB|WBGene00018409 - symbol:F44B9.8 species:6239 "Caenorha... 167 4.7e-09 1
UNIPROTKB|Q29RS9 - symbol:RFC4 "Uncharacterized protein" ... 166 4.8e-09 1
ASPGD|ASPL0000017750 - symbol:AN8064 species:162425 "Emer... 171 8.0e-09 2
WB|WBGene00004340 - symbol:rfc-4 species:6239 "Caenorhabd... 162 1.3e-08 1
UNIPROTKB|P53016 - symbol:rfc-4 "Replication factor C sub... 162 1.3e-08 1
POMBASE|SPAC23D3.02 - symbol:rfc2 "DNA replication factor... 161 1.8e-08 1
FB|FBgn0030871 - symbol:CG8142 species:7227 "Drosophila m... 160 2.6e-08 1
SGD|S000003829 - symbol:RFC2 "Subunit of heteropentameric... 158 4.2e-08 1
GENEDB_PFALCIPARUM|PF14_0601 - symbol:PF14_0601 "replicat... 155 8.5e-08 1
UNIPROTKB|Q8IKK4 - symbol:PF14_0601 "Replication factor C... 155 8.5e-08 1
SGD|S000005234 - symbol:RFC3 "Subunit of heteropentameric... 107 1.1e-07 2
RGD|1309280 - symbol:Rfc5 "replication factor C (activato... 122 2.2e-07 2
UNIPROTKB|O06363 - symbol:Rv3644c "Possible DNA polymeras... 152 2.6e-07 1
UNIPROTKB|Q9KQI3 - symbol:VC_2015 "DNA polymerase III, de... 149 3.4e-07 1
TIGR_CMR|VC_2015 - symbol:VC_2015 "DNA polymerase III, de... 149 3.4e-07 1
ASPGD|ASPL0000039105 - symbol:AN2969 species:162425 "Emer... 150 4.0e-07 1
CGD|CAL0002015 - symbol:RFC2 species:5476 "Candida albica... 146 9.7e-07 1
TIGR_CMR|BA_0028 - symbol:BA_0028 "DNA polymerase III, de... 145 9.7e-07 1
POMBASE|SPAC27E2.10c - symbol:rfc3 "DNA replication facto... 101 1.4e-06 2
POMBASE|SPAC1687.03c - symbol:rfc4 "DNA replication facto... 108 2.0e-05 2
DICTYBASE|DDB_G0282235 - symbol:rfc5 "replication factor ... 132 3.1e-05 1
UNIPROTKB|C9J8M3 - symbol:RFC4 "Replication factor C subu... 126 3.4e-05 1
TIGR_CMR|GSU_2230 - symbol:GSU_2230 "DNA polymerase III, ... 129 5.7e-05 1
WB|WBGene00004338 - symbol:rfc-2 species:6239 "Caenorhabd... 104 6.6e-05 2
TAIR|locus:2204710 - symbol:RFC3 "replication factor C su... 125 0.00020 1
UNIPROTKB|Q32PI3 - symbol:RFC5 "Uncharacterized protein" ... 123 0.00025 1
UNIPROTKB|J9NUF8 - symbol:RFC5 "Uncharacterized protein" ... 123 0.00025 1
UNIPROTKB|E2RCF4 - symbol:RFC5 "Uncharacterized protein" ... 123 0.00029 1
MGI|MGI:1919401 - symbol:Rfc5 "replication factor C (acti... 123 0.00029 1
UNIPROTKB|P40937 - symbol:RFC5 "Replication factor C subu... 123 0.00029 1
UNIPROTKB|F1RKG3 - symbol:RFC5 "Uncharacterized protein" ... 123 0.00031 1
FB|FBgn0260985 - symbol:RfC4 "Replication factor C subuni... 90 0.00052 2
UNIPROTKB|C9JXZ7 - symbol:RFC4 "Replication factor C subu... 99 0.00061 1
>TAIR|locus:2121934 [details] [associations]
symbol:AT4G24790 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0009360 "DNA polymerase III complex"
evidence=IEA] InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 GO:GO:0005524 EMBL:CP002687
GO:GO:0003677 GO:GO:0006260 GO:GO:0003887 GO:GO:0009360
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 IPI:IPI00532502
RefSeq:NP_001119046.1 RefSeq:NP_194210.2 UniGene:At.54505
ProteinModelPortal:F4JRP8 SMR:F4JRP8 PRIDE:F4JRP8
EnsemblPlants:AT4G24790.1 EnsemblPlants:AT4G24790.2 GeneID:828581
KEGG:ath:AT4G24790 OMA:TWLTVAL Uniprot:F4JRP8
Length = 857
Score = 1560 (554.2 bits), Expect = 2.7e-192, Sum P(4) = 2.7e-192
Identities = 350/699 (50%), Positives = 452/699 (64%)
Query: 142 LNREFDMCCSMPYSQPMEDVGFCKGPNVGSS--SMEDIDQSASIWKLQYKNEGRLCGAAN 199
+N E D CS + D+ KG ++ + S+ ++++ S + + +L +
Sbjct: 102 INVEGD-ACSRSSERSCSDLSV-KGRDLACNAPSISHVEEAGSGGRYRTHYSTKLASSVG 159
Query: 200 GGASRVSTPCPSISEIMANHSRSLFANEEIDVN-QSHHGCGLSCCWSRTPRSRQSNLSSD 258
SR+ +P S NHS + +E++D + QS+ GCG++ CWSRTPR R SN SSD
Sbjct: 160 EYGSRLGSPMNS-----TNHS--YYGDEDVDFDSQSNRGCGITYCWSRTPRYRGSNQSSD 212
Query: 259 LEDNPLLSGEIGETAHYGRSGHKLINNEISTYSETPWSLSQKFRPNFFDELVGQNVVVRS 318
+E+ PLL G + H++++ SLSQKFRP FDELVGQ VVV+
Sbjct: 213 VEEYPLLPGNGNGESDVVTPSHEVLSR----------SLSQKFRPKSFDELVGQEVVVKC 262
Query: 319 LLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS-LEDQKPCGLCRECALFSSGR 377
LLS I RG +TS YLFHGPRGTGKTS S+IFAAALNCLS +PCGLC EC + SGR
Sbjct: 263 LLSTILRGRITSVYLFHGPRGTGKTSTSKIFAAALNCLSQAAHSRPCGLCSECKSYFSGR 322
Query: 378 SRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENI 437
RDV E DS ++NR + SL+KSA LPP SSRFK+FIIDECQLL ETW T+LNSL+N
Sbjct: 323 GRDVMETDSGKLNRPSYLRSLIKSASLPPVSSRFKVFIIDECQLLCQETWGTLLNSLDNF 382
Query: 438 SQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFI 497
SQH VF+++T EL+KLPR+ LSRSQKYHF K+ D DI+++L +IC+EE I+FDQ A+DFI
Sbjct: 383 SQHSVFILVTSELEKLPRNVLSRSQKYHFSKVCDADISTKLAKICIEEGIDFDQGAVDFI 442
Query: 498 AAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVXXXXXXXXXXXXXXXXXXNTVIR 557
A+KS+GS+RDAE++LDQLSLLGK+IT SLAY+LIG+V NTVIR
Sbjct: 443 ASKSDGSLRDAEIMLDQLSLLGKRITTSLAYKLIGVVSDDELLDLLDLAMSSDTSNTVIR 502
Query: 558 ARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARKNFFGKHTSEADMQKLSRALKI 617
ARELMRSKIDPMQLISQLAN+IMDI+AG E S R F +HTSE +MQKL ALKI
Sbjct: 503 ARELMRSKIDPMQLISQLANVIMDIIAGNSQESSSATRLRFLTRHTSEEEMQKLRNALKI 562
Query: 618 LSETEKQLRMSKHQTTWLTVAXXXXXXXXXXXXXXXXXXCLRYAHDKDGDSHCTISPRDS 677
LS+ EK LR SK+QTTWLTVA +A D++G + +D
Sbjct: 563 LSDAEKHLRASKNQTTWLTVALLQLSNTDSSS----------FATDENGRNQIN---KDV 609
Query: 678 FKHLVRGSCVGD--KAN-KLGALEDYKGTLESIWKTATELCQSNSLKTFLRKQGKLSSLH 734
C GD K++ + G + T+ES+WKT T+LC S+SLK FL K+G+L+SL
Sbjct: 610 ELSSTSSGCPGDVIKSDAEKGQERNCNETVESVWKTVTDLCCSDSLKRFLWKRGRLTSLT 669
Query: 735 VNHGLAVAELEFHHRDYVSRAEKSWKLIASTLQSVLGCNVEIRL-----LCAPVSAKENK 789
V+ G+A+AELEF+ +V+RAEKSWKLIA + QSVLGCNVEI++ C+P + +
Sbjct: 670 VDKGVAIAELEFYTPQHVARAEKSWKLIADSFQSVLGCNVEIQMNLVISACSPPKSAKAA 729
Query: 790 PS--FSLFSCSRWVQQSRSTTERETDSDYSDYFSEKPMI 826
S F LFSCSR + T R TDSD + SEKP +
Sbjct: 730 ASLFFGLFSCSRRMLHKSYLTTR-TDSDCA---SEKPAV 764
Score = 231 (86.4 bits), Expect = 2.7e-192, Sum P(4) = 2.7e-192
Identities = 46/65 (70%), Positives = 54/65 (83%)
Query: 2 EGRRHSVDIPISRTLIALRRVRSLRDPSTNSMSKFSALLDNVNWETNSSNGISSRF---- 57
E RRHSVD+PI+RTL+ALRRVRSLRDP T SMSKF++LLDNV WET S+NGIS +F
Sbjct: 3 ETRRHSVDVPITRTLVALRRVRSLRDPCTTSMSKFASLLDNVKWETGSNNGISLQFVEHA 62
Query: 58 DNGCK 62
D+ CK
Sbjct: 63 DDACK 67
Score = 82 (33.9 bits), Expect = 2.7e-192, Sum P(4) = 2.7e-192
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 973 EDGPQENSDVLCWRTPTFPLKKAGQMAHQRKRSNIMDCILPCTNA 1017
E P++++DVLCW+ PL K K S ++ +LPC+ A
Sbjct: 813 EKRPEDDTDVLCWKKT--PLGKGQSETQNSKSSRLIGRVLPCSTA 855
Score = 56 (24.8 bits), Expect = 1.5e-189, Sum P(4) = 1.5e-189
Identities = 32/118 (27%), Positives = 52/118 (44%)
Query: 821 SEKPMIRARHTLTCSSDCGSQMSHNCCHKTDVVRALRSSEGNVLSTGTVSFHRSIQDDIS 880
S + + ++ T SDC S+ K V +LRS +GNVL +V RS + S
Sbjct: 740 SRRMLHKSYLTTRTDSDCASE-------KPAVTNSLRSCQGNVLRARSV---RSSANASS 789
Query: 881 RSAGCEISSLNRNDYYCQV-LSPQE--PE--TQPSCFPRTL--RLQKKLRASDTSEMV 931
R + C + C + P E PE T C+ +T + Q + + S +S ++
Sbjct: 790 RMS-CSSDQGDATSAMCTPHIPPGEKRPEDDTDVLCWKKTPLGKGQSETQNSKSSRLI 846
Score = 44 (20.5 bits), Expect = 4.0e-18, Sum P(4) = 4.0e-18
Identities = 24/98 (24%), Positives = 36/98 (36%)
Query: 852 VVRALRSSEGNVLSTGTVSFHRSIQDDISRSAGCEISSLNRNDYYCQVLSPQEPETQPSC 911
V+RA + +S ++ DI E SS R + + S +E + +
Sbjct: 500 VIRARELMRSKIDPMQLISQLANVIMDIIAGNSQESSSATRLRFLTRHTSEEEMQKLRNA 559
Query: 912 FPRTLRLQKKLRASDTSEMVCTSNKLALSIPKKTSFDT 949
+K LRAS T L LS +SF T
Sbjct: 560 LKILSDAEKHLRASKNQTTWLTVALLQLSNTDSSSFAT 597
Score = 41 (19.5 bits), Expect = 2.7e-192, Sum P(4) = 2.7e-192
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 117 LDNYQSKEEEVDGH--ESLGERRCINHLNREFDMCCSMPYSQPMEDVG 162
L SK V+G ER C + + D+ C+ P +E+ G
Sbjct: 94 LHKLSSKVINVEGDACSRSSERSCSDLSVKGRDLACNAPSISHVEEAG 141
>TAIR|locus:2065299 [details] [associations]
symbol:STI "STICHEL" species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0009360 "DNA
polymerase III complex" evidence=IEA] [GO:0010026 "trichome
differentiation" evidence=IMP] [GO:0010091 "trichome branching"
evidence=IMP] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0000278 "mitotic cell cycle" evidence=RCA] [GO:0003002
"regionalization" evidence=RCA] [GO:0007155 "cell adhesion"
evidence=RCA] [GO:0009887 "organ morphogenesis" evidence=RCA]
[GO:0009888 "tissue development" evidence=RCA] [GO:0010014
"meristem initiation" evidence=RCA] [GO:0010090 "trichome
morphogenesis" evidence=RCA] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
[GO:0010638 "positive regulation of organelle organization"
evidence=RCA] [GO:0016049 "cell growth" evidence=RCA] [GO:0016926
"protein desumoylation" evidence=RCA] [GO:0033043 "regulation of
organelle organization" evidence=RCA] [GO:0033044 "regulation of
chromosome organization" evidence=RCA] [GO:0045010 "actin
nucleation" evidence=RCA] [GO:0045595 "regulation of cell
differentiation" evidence=RCA] [GO:0048449 "floral organ formation"
evidence=RCA] [GO:0048589 "developmental growth" evidence=RCA]
[GO:0048765 "root hair cell differentiation" evidence=RCA]
[GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA]
[GO:0071555 "cell wall organization" evidence=RCA]
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR022754
Pfam:PF12169 GO:GO:0005886 GO:GO:0005524 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0006260 GO:GO:0010091
EMBL:AC004136 GO:GO:0003887 GO:GO:0009360 eggNOG:COG2812
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 EMBL:AF264023 IPI:IPI00542444
PIR:T00615 RefSeq:NP_565285.1 UniGene:At.19529 HSSP:P06710
ProteinModelPortal:O64728 SMR:O64728 STRING:O64728 PaxDb:O64728
PRIDE:O64728 EnsemblPlants:AT2G02480.1 GeneID:814777
KEGG:ath:AT2G02480 TAIR:At2g02480 HOGENOM:HOG000244020
InParanoid:O64728 OMA:CHSKTLR PhylomeDB:O64728
ProtClustDB:CLSN2687935 ArrayExpress:O64728 Genevestigator:O64728
Uniprot:O64728
Length = 1218
Score = 852 (305.0 bits), Expect = 5.4e-102, Sum P(4) = 5.4e-102
Identities = 181/387 (46%), Positives = 250/387 (64%)
Query: 258 DLEDNPLLSGEIGETAHYGRSGHKLI----NNEISTYSETPWSLSQKFRPNFFDELVGQN 313
DLE L G T++ + G + + E + ET S SQK+RP FF+EL+GQ+
Sbjct: 408 DLEAQSRLDGRRWSTSYRSQDGLEAVALDGEEEEGSTPETIRSFSQKYRPMFFEELIGQS 467
Query: 314 VVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALF 373
+VV+SL++A+ R + YLF GPRGTGKTS +RIF+AALNC++ E+ KPCG C+EC F
Sbjct: 468 IVVQSLMNAVKRSRIAPVYLFQGPRGTGKTSTARIFSAALNCVATEEMKPCGYCKECNDF 527
Query: 374 SSGRSRDVKEVDSVRINRSDRVGSLMKS--AFLPPFSSRFKIFIIDECQLLHGETWATVL 431
SG+S+D E+D +D+V L+K+ LP SS +K+F+IDEC LL +TW + L
Sbjct: 528 MSGKSKDFWELDGANKKGADKVRYLLKNLPTILPRNSSMYKVFVIDECHLLPSKTWLSFL 587
Query: 432 NSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQ 491
LEN Q VVF+ IT +L+ +PR+ SR QK+ F K+KD DI RL++I +E ++ D
Sbjct: 588 KFLENPLQKVVFIFITTDLENVPRTIQSRCQKFLFDKLKDSDIVVRLKKIASDENLDVDL 647
Query: 492 AALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVXXXXXXXXXXXXXXXXX 551
ALD IA ++GS+RDAE +L+QLSLLGK+IT +L EL+G+V
Sbjct: 648 HALDLIAMNADGSLRDAETMLEQLSLLGKRITTALVNELVGVVSDEKLLELLELALSSDT 707
Query: 552 XNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEARKN-FF-GKHTSEADMQ 609
TV RAREL+ DP+ L+SQLA+LIMDI+AG + E N FF G++ +EADM+
Sbjct: 708 AETVKRARELLDLGADPIVLMSQLASLIMDIIAGT-YKVVDEKYSNAFFDGRNLTEADME 766
Query: 610 KLSRALKILSETEKQLRMSKHQTTWLT 636
L ALK+LSE EKQLR+S ++TW T
Sbjct: 767 GLKHALKLLSEAEKQLRVSNDRSTWFT 793
Score = 123 (48.4 bits), Expect = 5.4e-102, Sum P(4) = 5.4e-102
Identities = 27/79 (34%), Positives = 42/79 (53%)
Query: 704 LESIWKTATELCQSNSLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKSWKLIA 763
L IW+ E C S +L+ L GKL S+ G+ VA + F D RAE+ I
Sbjct: 912 LNDIWRKCIERCHSKTLRQLLYTHGKLISISEVEGILVAYIAFGENDIKLRAERFLSSIT 971
Query: 764 STLQSVLGCNVEIRLLCAP 782
++++ VL +VE+R++ P
Sbjct: 972 NSIEMVLRRSVEVRIILLP 990
Score = 48 (22.0 bits), Expect = 5.4e-102, Sum P(4) = 5.4e-102
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 226 NEEIDVN---QSHHGCGLSCCWSR 246
++E+D N GCG+ C W++
Sbjct: 292 DDELDDNLDLPGRQGCGIPCYWTK 315
Score = 42 (19.8 bits), Expect = 5.4e-102, Sum P(4) = 5.4e-102
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 1 MEGRRHS--VDIPISRTLIALRRV-RSLRDPSTNSMSK 35
M G R S + + + L +R+ R LRDP T S K
Sbjct: 1 MSGSRVSDLSKLHLKKELTQIRKAGRVLRDPGTTSSWK 38
Score = 42 (19.8 bits), Expect = 2.9e-98, Sum P(3) = 2.9e-98
Identities = 19/73 (26%), Positives = 35/73 (47%)
Query: 13 SRTLIALRRVRSLRDPSTNSMSKFSALLDNVNWETNSSNGISSRFDNGCKGLFESESLSI 72
SR+ L R + ++ S+ + + AL T+S N + R + G ++ + S+
Sbjct: 236 SRSSSRLLRANNRKEDSSCTYNSTPAL------STSSYNMYAVR-NPSTVGSWDGTTTSV 288
Query: 73 NGLKKEKDDDLEL 85
N E DD+L+L
Sbjct: 289 NDGDDELDDNLDL 301
Score = 38 (18.4 bits), Expect = 4.3e-93, Sum P(4) = 4.3e-93
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 840 SQMSHNCCHKTDVVRALRSSEGNVLS 865
S++ N C+K+ + SEG++ S
Sbjct: 868 SRVIDNNCYKSSSSSQMIESEGSIAS 893
>TAIR|locus:2012497 [details] [associations]
symbol:AT1G14460 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0009360 "DNA polymerase III complex"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IDA]
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00382 EMBL:CP002684
GO:GO:0005886 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 GO:GO:0003887 GO:GO:0009360 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 IPI:IPI00525486 RefSeq:NP_172898.2
UniGene:At.43554 UniGene:At.69297 ProteinModelPortal:F4HW65
SMR:F4HW65 PRIDE:F4HW65 EnsemblPlants:AT1G14460.1 GeneID:838008
KEGG:ath:AT1G14460 OMA:REVIAYK Uniprot:F4HW65
Length = 1116
Score = 831 (297.6 bits), Expect = 2.1e-101, Sum P(4) = 2.1e-101
Identities = 177/383 (46%), Positives = 253/383 (66%)
Query: 258 DLEDNPLLSGEIGETAHYGRSGHKLINNEISTYSETPWSLSQKFRPNFFDELVGQNVVVR 317
DLE L G + + G + E + E+ SLSQK++P FFDEL+GQ++VV+
Sbjct: 385 DLEAQSRLDGRRWSSCCKSQDGEREEEEEGGSTPESIQSLSQKYKPMFFDELIGQSIVVQ 444
Query: 318 SLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC-LSLEDQKPCGLCRECALFSSG 376
SL++A+ +G V YLF GPRGTGKTS +RI +AALNC + E+ KPCG C+EC+ + G
Sbjct: 445 SLMNAVKKGRVAHVYLFQGPRGTGKTSTARILSAALNCDVVTEEMKPCGYCKECSDYMLG 504
Query: 377 RSRDVKEVDSVRINRSDRVGSLMKSAF-LPPFSS-RFKIFIIDECQLLHGETWATVLNSL 434
+SRD+ E+D+ + N +++V L+K L P SS R+K+F+IDEC LL TW ++L L
Sbjct: 505 KSRDLLELDAGKKNGAEKVRYLLKKLLTLAPQSSQRYKVFVIDECHLLPSRTWLSLLKFL 564
Query: 435 ENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAAL 494
EN Q VFV IT +LD +PR+ SR QKY F K++DGDI RLR+I +E ++ + AL
Sbjct: 565 ENPLQKFVFVCITTDLDNVPRTIQSRCQKYIFNKVRDGDIVVRLRKIASDENLDVESQAL 624
Query: 495 DFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVXXXXXXXXXXXXXXXXXXNT 554
D IA ++GS+RDAE +L+QLSL+GK+IT+ L EL+G+V T
Sbjct: 625 DLIALNADGSLRDAETMLEQLSLMGKRITVDLVNELVGVVSDDKLLELLELALSSDTAET 684
Query: 555 VIRARELMRSKIDPMQLISQLANLIMDILAG--KCLED-CSEARKNFFGKHTSEADMQKL 611
V +AREL+ DP+ ++SQLA+LIMDI+AG K L++ SEA + ++ +EAD+++L
Sbjct: 685 VKKARELLDLGADPILMMSQLASLIMDIIAGAYKALDEKYSEAFLD--RRNLTEADLERL 742
Query: 612 SRALKILSETEKQLRMSKHQTTW 634
ALK+LSE EKQLR+S ++TW
Sbjct: 743 KHALKLLSEAEKQLRVSTDRSTW 765
Score = 115 (45.5 bits), Expect = 2.1e-101, Sum P(4) = 2.1e-101
Identities = 26/76 (34%), Positives = 41/76 (53%)
Query: 704 LESIWKTATELCQSNSLKTFLRKQGKLSSLHVNHGLAVAELEFHHRDYVSRAEKSWKLIA 763
L IW + C S +LK L GKL S+ G+ VA + F + +RAE+ I
Sbjct: 870 LNDIWIKCVDRCHSKTLKQLLYAHGKLLSISEVEGILVAYIAFGEGEIKARAERFVSSIT 929
Query: 764 STLQSVLGCNVEIRLL 779
++++ VL NVE+R++
Sbjct: 930 NSIEMVLRRNVEVRII 945
Score = 62 (26.9 bits), Expect = 2.1e-101, Sum P(4) = 2.1e-101
Identities = 26/84 (30%), Positives = 36/84 (42%)
Query: 1 MEGRRHS--VDIPISRTLIALRRVRS--LRDPSTNSMSKFSALLDNVNWETNSSNGISSR 56
M G R S + + + L +R+V S LRDP T S K E +SN +
Sbjct: 1 MSGLRISDPSKLHLKKELTHIRKVASKGLRDPGTTSSWKSPLTSSRFVVEPPASNNVEIL 60
Query: 57 FDNGCKGLFESESL-SINGLKKEK 79
+N F S + NG +KEK
Sbjct: 61 SNNQLDSQFPSSRVFGNNGKEKEK 84
Score = 41 (19.5 bits), Expect = 2.1e-101, Sum P(4) = 2.1e-101
Identities = 13/60 (21%), Positives = 20/60 (33%)
Query: 962 SSNYHHSSVRDEDGPQENSDVLCWRTPTFPLK---KAGQMAHQRKRSNIMDCILPCTNAK 1018
++N + E G S + CW T P + K M +R R C +
Sbjct: 1056 TNNKDNLGYESESGRGVCSLLFCWNTQKSPRRTKIKGTSMRSRRSRERRFSLFSACARPR 1115
>TAIR|locus:2172013 [details] [associations]
symbol:AT5G45720 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0009360 "DNA polymerase III complex" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00382 GO:GO:0005524
EMBL:CP002688 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
GO:GO:0003887 GO:GO:0009360 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
IPI:IPI00536419 RefSeq:NP_199384.2 UniGene:At.51078
UniGene:At.70630 ProteinModelPortal:F4KEM0 SMR:F4KEM0 PRIDE:F4KEM0
EnsemblPlants:AT5G45720.1 GeneID:834611 KEGG:ath:AT5G45720
OMA:ESGRSEI Uniprot:F4KEM0
Length = 966
Score = 784 (281.0 bits), Expect = 1.4e-84, Sum P(3) = 1.4e-84
Identities = 200/604 (33%), Positives = 319/604 (52%)
Query: 266 SGEIGETA-HYGRSGHKLINNEISTYSETPW--SLSQKFRPNFFDELVGQNVVVRSLLSA 322
SGE+G A + ++G + + S+ T W S +QK+ P F +L+GQN+VV++L +A
Sbjct: 311 SGELGIFADNLLKNGKDSVIGKKSSRKNTRWHQSFTQKYAPRTFRDLLGQNLVVQALSNA 370
Query: 323 ISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVK 382
I++ V Y+FHGP GTGKTS +R+FA ALNC S E KPCG+C C + G++R ++
Sbjct: 371 IAKRRVGLLYVFHGPNGTGKTSCARVFARALNCHSTEQSKPCGVCSSCVSYDDGKNRYIR 430
Query: 383 EVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVV 442
E+ V+ S +L+ + + + I D+C + + W T+ ++ + VV
Sbjct: 431 EMGPVK---SFDFENLLDKTNIRQQQKQQLVLIFDDCDTMSTDCWNTLSKIVDRAPRRVV 487
Query: 443 FVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSN 502
FV++ LD LP +SR QK+ FPK+KD DI L+ I +E I+ D+ AL +A++S+
Sbjct: 488 FVLVCSSLDVLPHIIVSRCQKFFFPKLKDVDIIDSLQLIASKEEIDIDKDALKLVASRSD 547
Query: 503 GSIRDAEMLLDQLSLLGKKITLSLAYELIGIVXXXXXXXXXXXXXXXXXXNTVIRARELM 562
GS+RDAEM L+QLSLLG +I++ L E++G++ NTV R +M
Sbjct: 548 GSLRDAEMTLEQLSLLGTRISVPLVQEMVGLISDEKLVDLLDLALSADTVNTVKNLRIIM 607
Query: 563 RSKIDPMQLISQLANLIMDILAGKCLEDCSEARKNFFGKHT-SEADMQKLSRALKILSET 621
+ ++P+ L+SQLA +I DILAG + ++ FF + S+ DM+KL +ALK LSE+
Sbjct: 608 ETGLEPLALMSQLATVITDILAGSYDFTKDQCKRKFFRRQPLSKEDMEKLKQALKTLSES 667
Query: 622 EKQLRMSKHQTTWLTVAXXXXXXXXXXXXXXXXXXCLRYAHDKDGD-SHCTISPRDSFKH 680
EKQLR+S + TWLT A L ++ D +H ++ D H
Sbjct: 668 EKQLRVSNDKLTWLTAALLQLAPDKQYL--------LPHSSSADASFNHTPLTDSDPSNH 719
Query: 681 LVRGSCVGDKANKLGALEDYKGTLESIWKTATELCQSNSLKTFLRKQGKLSSLHVNHGLA 740
+V G+ D +K G + ++E IW E + N L+ FL K+GK+ S+ +
Sbjct: 720 VVAGTRRDD--SKQGFSCKNRPSVEDIWLAVIENVRVNGLREFLYKEGKIFSISIGSAPM 777
Query: 741 VAELEFHHRDYVSRAEKSWKLIASTLQSVLGCNVEIRLLCAPVSAKENKPSFSLFSCSRW 800
V +L F+ S AE + I ++VLG V + + +K++ SL S
Sbjct: 778 V-QLMFNSPIAKSTAENFEEHILKAFEAVLGSPVTLEMR---TESKKDLGFSSLQGLSNG 833
Query: 801 VQQSRSTTERETDSDYSDYFSEKPMIRARHT-LTCSSDCGSQMSHNCCH-KTDVVRALRS 858
++ R + E + +D SE PM R R L S + + + K + + ++
Sbjct: 834 -ERFRESGRSEI-VEVAD--SESPMTRVRRKHLEASQNQNQNQNQSIVRGKVSLAQVIKQ 889
Query: 859 SEGN 862
+EGN
Sbjct: 890 AEGN 893
Score = 56 (24.8 bits), Expect = 1.4e-84, Sum P(3) = 1.4e-84
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 12 ISRTLIALRRVRSLRDPSTN 31
+ R L+ L+R RSLRDPS +
Sbjct: 53 LMRDLVVLQRSRSLRDPSAS 72
Score = 39 (18.8 bits), Expect = 1.4e-84, Sum P(3) = 1.4e-84
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 119 NYQSKEEEVDGHESLGERRCINHLNREFDMCCSMPYS 155
N + E+ +G E G R +RE +M C +P++
Sbjct: 215 NSVPRGEKYEGEEGGGGR------DREQNMSCGIPFN 245
>UNIPROTKB|Q97RF7 [details] [associations]
symbol:dnaX "DNA polymerase III, gamma and tau subunits"
species:170187 "Streptococcus pneumoniae TIGR4" [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR001270
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 PRINTS:PR00300 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE005672
GenomeReviews:AE005672_GR GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
HOGENOM:HOG000083933 KO:K02343 ProtClustDB:PRK05563 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 HSSP:P06710 OMA:QTSHAYL PIR:G95099
RefSeq:NP_345352.1 ProteinModelPortal:Q97RF7
EnsemblBacteria:EBSTRT00000026555 GeneID:930817 KEGG:spn:SP_0865
PATRIC:19706123 Uniprot:Q97RF7
Length = 551
Score = 428 (155.7 bits), Expect = 7.2e-41, Sum P(2) = 7.2e-41
Identities = 90/241 (37%), Positives = 144/241 (59%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+R F +LVGQ VV ++L A+ + ++ YLF GPRGTGKTS ++IFA A+NC
Sbjct: 4 ALYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +PC C C + G DV E+D+ N D + + + P +R+K++I
Sbjct: 64 PNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +Q+VVF++ T EL K+P + LSR Q++ F IK DI
Sbjct: 124 IDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQDIK 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLL-GKKITLSLAYELIGI 533
+ I +E I+ + A++ IA ++ G +RDA +LDQ LSL G ++T +++ E+ G
Sbjct: 184 EHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEITGT 243
Query: 534 V 534
+
Sbjct: 244 I 244
Score = 43 (20.2 bits), Expect = 7.2e-41, Sum P(2) = 7.2e-41
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 961 GSSNYHHSSVRDEDG--PQEN 979
G +N HHSSV E+ PQ+N
Sbjct: 298 GGANTHHSSVFVENLALPQKN 318
>UNIPROTKB|P09122 [details] [associations]
symbol:dnaX "DNA polymerase III subunit gamma/tau"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001270
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 PRINTS:PR00300 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AL009126
GenomeReviews:AL009126_GR GO:GO:0017111 GO:GO:0003887 EMBL:D26185
GO:GO:0009360 EMBL:X17014 EMBL:X06803 EMBL:X52144 PIR:I40469
PIR:S13786 RefSeq:NP_387900.2 ProteinModelPortal:P09122 SMR:P09122
IntAct:P09122 EnsemblBacteria:EBBACT00000003868 GeneID:936899
KEGG:bsu:BSU00190 PATRIC:18971499 GenoList:BSU00190 eggNOG:COG2812
HOGENOM:HOG000083933 KO:K02343 ProtClustDB:PRK05563
BioCyc:BSUB:BSU00190-MONOMER SUPFAM:SSF48019 TIGRFAMs:TIGR02397
Uniprot:P09122
Length = 563
Score = 426 (155.0 bits), Expect = 6.4e-39, P = 6.4e-39
Identities = 102/349 (29%), Positives = 177/349 (50%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + FRP F+++VGQ + ++L +A+ + + YLF GPRGTGKTSA++IFA A+NC
Sbjct: 5 ALYRVFRPQRFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAVNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+PC C C ++G DV E+D+ N D + + P + +K++I
Sbjct: 65 EHAPVDEPCNECAACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFAPSAVTYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +H +F++ T E K+P + +SR Q++ F +I I
Sbjct: 125 IDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQRFDFKRITSQAIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
R+ +I E + ++ +L+ IA+ ++G +RDA LLDQ +S G + + A + G V
Sbjct: 185 GRMNKIVDAEQLQVEEGSLEIIASAADGGMRDALSLLDQAISFSGDILKVEDALLITGAV 244
Query: 535 XXXXXXXXXXXXXXXXXXNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC---LEDC 591
+ + EL++ DP +LI + D+L K LE
Sbjct: 245 SQLYIGKLAKSLHDKNVSDALETLNELLQQGKDPAKLIEDMIFYFRDMLLYKTAPGLEGV 304
Query: 592 SEARK--NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVA 638
E K F + + + Q L + IL+++ ++++ + H + VA
Sbjct: 305 LEKVKVDETFRELSEQIPAQALYEMIDILNKSHQEMKWTNHPRIFFEVA 353
>TIGR_CMR|CHY_2675 [details] [associations]
symbol:CHY_2675 "putative DNA polymerase III, gamma/tau
subunits" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006260 "DNA replication" evidence=ISS] InterPro:IPR001270
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 PRINTS:PR00300 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006260 GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 RefSeq:YP_361464.1 ProteinModelPortal:Q3A8S0
STRING:Q3A8S0 GeneID:3728788 KEGG:chy:CHY_2675 PATRIC:21278371
OMA:DICHAIN BioCyc:CHYD246194:GJCN-2674-MONOMER Uniprot:Q3A8S0
Length = 511
Score = 423 (154.0 bits), Expect = 1.4e-38, P = 1.4e-38
Identities = 98/345 (28%), Positives = 169/345 (48%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP F E+VGQ +V+ L +A++ V YLF GPRGTGKT+ +++ A A+NC
Sbjct: 4 ALYRKWRPKTFSEIVGQETIVKILKNAVATMQVAHAYLFSGPRGTGKTTTAKVLAKAVNC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ +PC C C ++ +V E+D+ D + L +S L P ++K++I
Sbjct: 64 EHPVEGEPCNQCPSCIGINNQSLLNVFEIDAASNRGIDEIRELRESIKLVPAQGKYKVYI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L E + +L +LE +HV+F++ T E +K+P + +SR Q++ F +I I
Sbjct: 124 IDEVHMLTNEAFNALLKTLEEPPEHVIFILATTEFNKVPVTIVSRCQRFDFKRISTKTIW 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGIVX 535
L+ I +E + ++ AL IA S G +RDA L+DQ+ + KIT+ +++G V
Sbjct: 184 EHLKNIAEKEKLQYEAEALHLIAEASEGGLRDALSLMDQILVFNPKITVEDTLKVLGFVS 243
Query: 536 XXXXXXXXXXXXXXXXXNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEAR 595
+ E++ +D + Q+ + + K + E
Sbjct: 244 WRKILELISAIRENNQLKIINEIAEVVERGLDVKLFVQQILQYVRYLNLIKNGIEVEELM 303
Query: 596 KNFFGKHTSEADM---QKLSRALKILSETEKQLRMSKHQTTWLTV 637
K SEA + KL ++ E+++R + W V
Sbjct: 304 PEVLEKLRSEAALWEEDKLFLLWDDIARLEREVRYASFPRIWAEV 348
>TIGR_CMR|CJE_1293 [details] [associations]
symbol:CJE_1293 "DNA polymerase III, gamma/tau subunits"
species:195099 "Campylobacter jejuni RM1221" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR012763
SMART:SM00382 GO:GO:0005524 GO:GO:0006260 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343 TIGRFAMs:TIGR02397
RefSeq:YP_179281.1 ProteinModelPortal:Q5HTV4 STRING:Q5HTV4
GeneID:3231800 KEGG:cjr:CJE1293 PATRIC:20044382 OMA:EMMLFLK
ProtClustDB:PRK08451 BioCyc:CJEJ195099:GJC0-1319-MONOMER
Uniprot:Q5HTV4
Length = 509
Score = 412 (150.1 bits), Expect = 2.1e-37, P = 2.1e-37
Identities = 88/240 (36%), Positives = 140/240 (58%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L+ K+RP FDEL+GQ V SL A++ + YLF G RG+GKTS++RIF+ AL C
Sbjct: 4 ALAIKYRPKTFDELIGQKTVSVSLKYALNHNRLAHAYLFSGLRGSGKTSSARIFSRALVC 63
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
PCG C+ C G+ D+ E+D+ + + +L++ P +RFKIFI
Sbjct: 64 EQGPSDTPCGTCKHCLAALEGKHIDIIEMDAASNRGLEDIQALIEQTKYTPSMARFKIFI 123
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE +V F++ T + KLP + LSR+Q + F +I +I
Sbjct: 124 IDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATVLSRTQHFRFKQIPQSEIL 183
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
+ L+ I ++E + F++ AL FIA NGS+RD LLDQ + + +I++S +++G +
Sbjct: 184 NHLKEILLKENVKFEEEALKFIARSGNGSLRDTLTLLDQAIIFCQNEISISKTTDMLGFL 243
>TIGR_CMR|GSU_0094 [details] [associations]
symbol:GSU_0094 "DNA polymerase III, gamma and tau
subunits" species:243231 "Geobacter sulfurreducens PCA" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001270 InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR022754
Pfam:PF12169 PRINTS:PR00300 SMART:SM00382 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0017111 GO:GO:0003887 GO:GO:0009360 HOGENOM:HOG000083933
KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397 HSSP:P28631
RefSeq:NP_951156.1 ProteinModelPortal:Q74GZ9 GeneID:2688299
KEGG:gsu:GSU0094 PATRIC:22022936 OMA:ELIDHFR ProtClustDB:PRK14965
BioCyc:GSUL243231:GH27-55-MONOMER Uniprot:Q74GZ9
Length = 579
Score = 416 (151.5 bits), Expect = 1.1e-36, P = 1.1e-36
Identities = 118/352 (33%), Positives = 171/352 (48%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L++K+RP F +L GQ V R+L +AI G + +LF G RG GKTS++RI A ALNC
Sbjct: 6 LARKWRPQTFSDLTGQEHVSRTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALNCE 65
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+PC +C C ++G S DV E+D D + L ++ P R+KIFII
Sbjct: 66 QGMSPEPCNVCPACTEITAGTSVDVLEIDGASNTGVDDIRELRENVKYLPSRLRYKIFII 125
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L + +L +LE HV F+ T E KLP + LSR Q++ F +I + +
Sbjct: 126 DEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKLPITILSRCQRFDFRRIPLAKVVA 185
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIVX 535
RLR I E I+ +L +A K +GS+RD+ +LDQ L+ G+ + L+G+V
Sbjct: 186 RLRYIVDREGISISDESLAVVARKGDGSMRDSLSVLDQVLAFCGETVNDDDVVSLLGVVD 245
Query: 536 XXXXXXXXXXXXXXXXXNT---VIRAREL---MRSKIDPMQLISQLANL-IMDIL--AGK 586
+ V R E MR +LI NL IM + AG
Sbjct: 246 RRLLLEASAAVLGRDTRSVLGVVARVDEFGYNMRQFCG--ELIDHFRNLTIMRAVGDAGD 303
Query: 587 CLEDCSEARKNFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTVA 638
L D SEA + S A ++ L R + IL + +L S + L +A
Sbjct: 304 LL-DLSEAELQSVREQASSALLEDLQRHMTILLRADGELAHSGYPRLVLEMA 354
>TIGR_CMR|CBU_0659 [details] [associations]
symbol:CBU_0659 "DNA polymerase III, gamma and tau
subunits" species:227377 "Coxiella burnetii RSA 493" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001270 InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR021029
InterPro:IPR022754 Pfam:PF12169 Pfam:PF12170 PRINTS:PR00300
SMART:SM00382 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0017111 GO:GO:0003887
GO:GO:0009360 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
HOGENOM:HOG000083934 HSSP:P06710 RefSeq:NP_819689.1
ProteinModelPortal:Q83DN8 SMR:Q83DN8 GeneID:1208544
KEGG:cbu:CBU_0659 PATRIC:17929995 OMA:CETKLLA ProtClustDB:PRK14958
BioCyc:CBUR227377:GJ7S-653-MONOMER Uniprot:Q83DN8
Length = 509
Score = 403 (146.9 bits), Expect = 1.9e-36, P = 1.9e-36
Identities = 86/239 (35%), Positives = 133/239 (55%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L++K+RP F E++GQ VVR+L +A+ + + YLF G RG GKT+ SRI A LNC
Sbjct: 6 LARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCE 65
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
PC C C GR D+ EVD+ + + L+ + P RFK+++I
Sbjct: 66 KGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLI 125
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L G ++ +L +LE HV F++ T + KLP + LSR ++H ++ IA+
Sbjct: 126 DEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAA 185
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIGIV 534
+ + EE + F+ AALD +A +NGS+RDA LLDQ G K+ ++ ++G +
Sbjct: 186 HCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTI 244
>UNIPROTKB|Q2GDS0 [details] [associations]
symbol:NSE_0492 "Putative DNA polymerase III, gamma/tau
subunit" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006259 "DNA metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00382 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0006259 GO:GO:0017111
EMBL:CP000237 GenomeReviews:CP000237_GR GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
RefSeq:YP_506376.1 ProteinModelPortal:Q2GDS0 STRING:Q2GDS0
GeneID:3931782 KEGG:nse:NSE_0492 PATRIC:22681033
HOGENOM:HOG000127275 OMA:IKEEIWI ProtClustDB:CLSK2528078
BioCyc:NSEN222891:GHFU-512-MONOMER Uniprot:Q2GDS0
Length = 396
Score = 400 (145.9 bits), Expect = 4.0e-36, P = 4.0e-36
Identities = 95/305 (31%), Positives = 155/305 (50%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L+ K+RP DE+VGQ+ +V+ L ++I+R V L GP GTGKT+ +R +L CL
Sbjct: 6 LANKYRPRLLDEIVGQDFLVKCLSASIARDEVAGAILLSGPYGTGKTTTARAVTLSLLCL 65
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+ PC C C SG D+ E+D+ + V L++ A P S++K +I+
Sbjct: 66 NRTSALPCLKCDSCISILSGSHPDILEIDAASNTGVEDVRMLIEGALYKPLLSKYKSYIV 125
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L ++ +L LE QHV F + T EL K+P + +SR Q Y ++ IA
Sbjct: 126 DEVHMLSQSAFSALLKLLEEPPQHVKFFLATTELQKIPATIISRCQHYRLSRLSRVVIAE 185
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK--KITLSLAYELIGIV 534
RL ++ +E I Q A+ FIA K++GS+RDA LL+Q++L KIT+ + +G+V
Sbjct: 186 RLTQVAEKEQIEITQDAIKFIAEKADGSLRDALSLLEQVTLHPSEGKITVHVLRNKMGLV 245
Query: 535 XXXXXXXXXXXXXXXXXXNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
++ + +L + + + +L LI + + K + S +
Sbjct: 246 DLSEVYMLLDSIIAGDCKTSLGKLNDLYSKGYEMLTIFMELVALINEKIQDKLTAEDS-S 304
Query: 595 RKNFF 599
+ FF
Sbjct: 305 KSGFF 309
>TIGR_CMR|NSE_0492 [details] [associations]
symbol:NSE_0492 "putative DNA polymerase III, gamma/tau
subunit" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006259 "DNA metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00382 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0006259 GO:GO:0017111
EMBL:CP000237 GenomeReviews:CP000237_GR GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
RefSeq:YP_506376.1 ProteinModelPortal:Q2GDS0 STRING:Q2GDS0
GeneID:3931782 KEGG:nse:NSE_0492 PATRIC:22681033
HOGENOM:HOG000127275 OMA:IKEEIWI ProtClustDB:CLSK2528078
BioCyc:NSEN222891:GHFU-512-MONOMER Uniprot:Q2GDS0
Length = 396
Score = 400 (145.9 bits), Expect = 4.0e-36, P = 4.0e-36
Identities = 95/305 (31%), Positives = 155/305 (50%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L+ K+RP DE+VGQ+ +V+ L ++I+R V L GP GTGKT+ +R +L CL
Sbjct: 6 LANKYRPRLLDEIVGQDFLVKCLSASIARDEVAGAILLSGPYGTGKTTTARAVTLSLLCL 65
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+ PC C C SG D+ E+D+ + V L++ A P S++K +I+
Sbjct: 66 NRTSALPCLKCDSCISILSGSHPDILEIDAASNTGVEDVRMLIEGALYKPLLSKYKSYIV 125
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L ++ +L LE QHV F + T EL K+P + +SR Q Y ++ IA
Sbjct: 126 DEVHMLSQSAFSALLKLLEEPPQHVKFFLATTELQKIPATIISRCQHYRLSRLSRVVIAE 185
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK--KITLSLAYELIGIV 534
RL ++ +E I Q A+ FIA K++GS+RDA LL+Q++L KIT+ + +G+V
Sbjct: 186 RLTQVAEKEQIEITQDAIKFIAEKADGSLRDALSLLEQVTLHPSEGKITVHVLRNKMGLV 245
Query: 535 XXXXXXXXXXXXXXXXXXNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLEDCSEA 594
++ + +L + + + +L LI + + K + S +
Sbjct: 246 DLSEVYMLLDSIIAGDCKTSLGKLNDLYSKGYEMLTIFMELVALINEKIQDKLTAEDS-S 304
Query: 595 RKNFF 599
+ FF
Sbjct: 305 KSGFF 309
>TIGR_CMR|DET_0585 [details] [associations]
symbol:DET_0585 "DNA polymerase III, gamma and tau
subunits, putative" species:243164 "Dehalococcoides ethenogenes
195" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0009360 "DNA polymerase III complex" evidence=ISS]
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00382 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0017111 GO:GO:0003887 GO:GO:0009360 eggNOG:COG2812
HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
RefSeq:YP_181327.1 ProteinModelPortal:Q3Z8X2 STRING:Q3Z8X2
GeneID:3230093 KEGG:det:DET0585 PATRIC:21608239 OMA:ISGDERI
ProtClustDB:PRK14950 BioCyc:DETH243164:GJNF-586-MONOMER
Uniprot:Q3Z8X2
Length = 559
Score = 395 (144.1 bits), Expect = 9.1e-36, Sum P(2) = 9.1e-36
Identities = 98/331 (29%), Positives = 165/331 (49%)
Query: 299 QKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSL 358
+K+RP +LVGQ V +L +A+S G + YLF GPRGTGKTS RI A A+NC +
Sbjct: 8 RKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCTTN 67
Query: 359 EDQ-KPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIID 417
+ + +PC C C + G S DV E+D+ D + L + P + +K++IID
Sbjct: 68 QGKGEPCNTCPMCLSITEGSSMDVIEIDAASNTGVDDIRELKEKVQYAPALANYKVYIID 127
Query: 418 ECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASR 477
E +L +L +LE V+F++ T E+ K+ + +SR Q++ F ++ D++ +
Sbjct: 128 EVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSRCQRFDFHRVSLSDMSRK 187
Query: 478 LRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL-GKKITLSLAYELIGIVXX 536
L +I E IN + AL IA + GS RD E LL Q++ G +I+L +GI
Sbjct: 188 LEKISQAEGINIEPEALKLIARSAGGSFRDGENLLQQIATTYGTEISLPQVQAALGISGD 247
Query: 537 XXXXXXXXXXXXXXXXNTVIRARELMRSKIDPMQLISQLANLIMDIL-----AGKCLEDC 591
N + ++ ID Q +L + + I+ A LE
Sbjct: 248 ERIKTLAENILKKDIKNGLQTLNAVVADGIDLKQFRRELLDYLRQIMLLNSGAEGSLELT 307
Query: 592 SEARKNFFGKHTSEADMQKLSRALKILSETE 622
++ +K K ++ +++ +++A+K S+ +
Sbjct: 308 ADEKKAL-QKVSAITNLEGITKAIKAFSQLD 337
Score = 54 (24.1 bits), Expect = 9.1e-36, Sum P(2) = 9.1e-36
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 851 DVVRALRSSEGNVLSTGTVSFHRSIQDDISRSAGCEISSLNRN 893
DV+ L+ S N+L + RS I RSAG S+ +N
Sbjct: 451 DVIEQLKVSWKNILDQAPDNLKRSAAVAILRSAGVRPVSIEKN 493
>TIGR_CMR|APH_1348 [details] [associations]
symbol:APH_1348 "DNA polymerase III, subunits gamma and
tau" species:212042 "Anaplasma phagocytophilum HZ" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR022754 Pfam:PF12169 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 OMA:TCARIVS ProtClustDB:PRK14964
RefSeq:YP_505851.1 ProteinModelPortal:Q2GIF0 STRING:Q2GIF0
GeneID:3930792 KEGG:aph:APH_1348 PATRIC:20951496
BioCyc:APHA212042:GHPM-1348-MONOMER Uniprot:Q2GIF0
Length = 456
Score = 379 (138.5 bits), Expect = 7.1e-34, P = 7.1e-34
Identities = 86/240 (35%), Positives = 137/240 (57%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L+ K+RP+ FD+LVGQ+V+VR L ++ S G + + L G G GKT+ +RI + LNC
Sbjct: 2 NLALKYRPSNFDDLVGQDVLVRILRNSFSVGNLNTPLLMVGASGVGKTTCARIVSLCLNC 61
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ PCG C C + + DV E+D+ D + +++S+ P SSRFK++I
Sbjct: 62 ENGPTSSPCGTCATCTSIKNSHNPDVVEMDAASNTSVDDIRVILESSNYLPVSSRFKVYI 121
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE+ +QH F+M T E+ K+P + SR + K+ +
Sbjct: 122 IDEVHMLSTSAFNALLKTLESPAQHAKFIMATTEVRKVPVTVASRCLRLDLGKLPIKQLY 181
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
L +I +E I D+++L IA S+GS+R++ LL+Q L KI+L EL+G V
Sbjct: 182 DHLVKISAKENIAHDESSLMLIAENSSGSVRNSLFLLEQALIYSNNKISLQEVRELLGCV 241
>TIGR_CMR|ECH_0014 [details] [associations]
symbol:ECH_0014 "DNA polymerase III, subunits gamma and
tau" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0009360 "DNA
polymerase III complex" evidence=ISS] InterPro:IPR003583
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00278 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 EMBL:CP000236 GenomeReviews:CP000236_GR
GO:GO:0006260 GO:GO:0006281 GO:GO:0017111 GO:GO:0003887
GO:GO:0009360 eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 RefSeq:YP_506849.1
ProteinModelPortal:Q2GI84 STRING:Q2GI84 GeneID:3926952
KEGG:ech:ECH_0014 PATRIC:20575601 OMA:HPDVIEI ProtClustDB:PRK14964
BioCyc:ECHA205920:GJNR-14-MONOMER Uniprot:Q2GI84
Length = 505
Score = 377 (137.8 bits), Expect = 1.2e-33, P = 1.2e-33
Identities = 80/246 (32%), Positives = 139/246 (56%)
Query: 290 YSETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIF 349
Y T S + K+RP+ F +L+GQ V+VR L +A + L G G GKT+A+RI
Sbjct: 10 YHST-MSFALKYRPSNFKDLIGQEVLVRVLHNAFHLNKIPESILLTGISGVGKTTAARII 68
Query: 350 AAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSS 409
+ LNC+S PC C+ C + DV E+D+ + V +++++ P SS
Sbjct: 69 SMCLNCISGPTSDPCNTCQNCISIKNFNHPDVIEIDAASNTSIEDVKVILENSRYMPISS 128
Query: 410 RFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKI 469
+FK++IIDE +L + +L LE + +V F++ T E+ K+P + +SR Q++ F +I
Sbjct: 129 KFKVYIIDEVHMLSNSAFNALLKVLEEPAPYVKFILATTEVKKIPVTIISRCQRFDFQRI 188
Query: 470 KDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKI-TLSLAY 528
+ L+ + +E ++FD+ ++ IA ++GSIR+A LL+Q ++ KI + ++
Sbjct: 189 STDKLVDHLKVVAKKENVSFDEESIKLIAYNADGSIRNALSLLEQAAIYSNKILSENITK 248
Query: 529 ELIGIV 534
E++G V
Sbjct: 249 EMLGYV 254
>TIGR_CMR|BA_0019 [details] [associations]
symbol:BA_0019 "DNA polymerase III, gamma and tau subunits"
species:198094 "Bacillus anthracis str. Ames" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001270 InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR022754
Pfam:PF12169 PRINTS:PR00300 SMART:SM00382 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
HOGENOM:HOG000083933 KO:K02343 ProtClustDB:PRK05563 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 HSSP:P06710 RefSeq:NP_842590.1
RefSeq:YP_016623.1 RefSeq:YP_026309.1 ProteinModelPortal:Q81W18
IntAct:Q81W18 DNASU:1089003 EnsemblBacteria:EBBACT00000011079
EnsemblBacteria:EBBACT00000018474 EnsemblBacteria:EBBACT00000022003
GeneID:1089003 GeneID:2819477 GeneID:2849405 KEGG:ban:BA_0019
KEGG:bar:GBAA_0019 KEGG:bat:BAS0021 OMA:QTSHAYL
BioCyc:BANT260799:GJAJ-24-MONOMER BioCyc:BANT261594:GJ7F-25-MONOMER
Uniprot:Q81W18
Length = 562
Score = 387 (141.3 bits), Expect = 3.7e-33, P = 3.7e-33
Identities = 96/348 (27%), Positives = 165/348 (47%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L + +RP F+++VGQ V ++L +A+ + V+ YLF GPRGTGKT+ +++FA A+NC
Sbjct: 5 ALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+PC C C + G DV E+D+ N D + + P + +K++I
Sbjct: 65 EHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKVYI 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L + +L +LE HV+F++ T E K+P + +SR Q++ F KI DI
Sbjct: 125 IDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVNDIV 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
RL + E + AL +A + G +RDA L+DQ +S +++T + G V
Sbjct: 185 ERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDERVTTEDVLAVTGSV 244
Query: 535 XXXXXXXXXXXXXXXXXXNTVIRARELMRSKIDPMQLISQLANLIMDILAGKC---LEDC 591
+ E+M DP++ + D+L + LE
Sbjct: 245 SQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYRDMLLYQTSPQLEHM 304
Query: 592 SEARK--NFFGKHTSEADMQKLSRALKILSETEKQLRMSKHQTTWLTV 637
E F + E + + + LS+ +++++ + H +L V
Sbjct: 305 LERVMVDEQFRMLSEEMQPEVIYEIIHTLSKGQQEMKWTNHPRIFLEV 352
>TIGR_CMR|SO_2013 [details] [associations]
symbol:SO_2013 "DNA polymerase III, gamma and tau subunits"
species:211586 "Shewanella oneidensis MR-1" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001270 InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR021029
InterPro:IPR022754 Pfam:PF12169 Pfam:PF12170 PRINTS:PR00300
SMART:SM00382 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0017111 GO:GO:0003887
GO:GO:0009360 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
HOGENOM:HOG000083934 HSSP:P06710 RefSeq:NP_717619.1
ProteinModelPortal:Q8EFG0 SMR:Q8EFG0 GeneID:1169765
KEGG:son:SO_2013 PATRIC:23523647 OMA:PKSGLEM ProtClustDB:PRK14949
Uniprot:Q8EFG0
Length = 1002
Score = 391 (142.7 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
Identities = 81/239 (33%), Positives = 139/239 (58%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L++K+RP F+++VGQ+ V+ +L +A+++ + YLF G RG GKTS +R+FA LNC
Sbjct: 6 LARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCE 65
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+ PCG+C C + GR D+ EVD+ + D L+ + P RFK+++I
Sbjct: 66 TGVTASPCGVCGSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPTRGRFKVYLI 125
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L ++ +L +LE +HV F++ T + KLP + LSR +++ + +I +
Sbjct: 126 DEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQQEIGT 185
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKKITLSLAYELIGIV 534
+L+ I +E + F+ AL +A +NGS+RDA L DQ ++ G + L+ ++G +
Sbjct: 186 QLQHILTQEQLPFEHEALGLLAKSANGSMRDALSLTDQAIAFGGGTVMLNQVQSMLGSI 244
Score = 44 (20.5 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 853 VRALRSSEGNVLSTGTVSFHRSIQD------DISRSAGCEISSLNRNDYYCQVLSPQE 904
V L +SEGN+ S G+ S Q D ++ A +S L +D VL+ +E
Sbjct: 573 VEQLSASEGNLFSNGSAQHSASNQTGQVFAVDNTQVAKAAVS-LEDDDILSAVLAARE 629
>UNIPROTKB|O83970 [details] [associations]
symbol:TP_1005 "DNA polymerase III, subunits gamma and tau
(DnaH)" species:243276 "Treponema pallidum subsp. pallidum str.
Nichols" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001270 InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR022754 Pfam:PF12169 PRINTS:PR00300
SMART:SM00382 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 GO:GO:0003887 EMBL:AE000520 GenomeReviews:AE000520_GR
GO:GO:0009360 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
HSSP:P06710 PIR:G71254 RefSeq:NP_219442.1 ProteinModelPortal:O83970
IntAct:O83970 GeneID:2610796 KEGG:tpa:TP1005 PATRIC:20532135
OMA:ANAYIFS ProtClustDB:PRK06647 Uniprot:O83970
Length = 572
Score = 372 (136.0 bits), Expect = 2.7e-31, P = 2.7e-31
Identities = 79/237 (33%), Positives = 127/237 (53%)
Query: 300 KFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLE 359
++RP F ++GQ VV +L ++ V+ YLF GP G GKTS +RI A ALNC+ E
Sbjct: 9 RYRPQRFQHVLGQKFVVATLQKSLEENKVSPAYLFSGPHGCGKTSCARILAKALNCVQRE 68
Query: 360 DQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDEC 419
+PCG C C ++G + +V E+D V + + PP +R+K+FIIDE
Sbjct: 69 ASEPCGECPSCREIATGTNLNVIEIDGASHTGVGDVRQIKEEILFPPHGTRYKVFIIDEV 128
Query: 420 QLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLR 479
+L + +L ++E +VVF+ T E+ ++P + SR Q++HF + + L
Sbjct: 129 HMLSNSAFNALLKTIEEPPPYVVFIFATTEVHRIPATVKSRCQQFHFRLVDTQTLVCALA 188
Query: 480 RICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ--LSLLGKKITLSLAYELIGIV 534
+ + I + L +IA +S GS+RDA L DQ +S G +TL + +G++
Sbjct: 189 QAAQQMQIAVEDGVLSWIARESAGSMRDAYTLFDQTVVSCAGP-VTLENIQKKLGLM 244
>UNIPROTKB|Q47XQ9 [details] [associations]
symbol:dnaX "DNA polymerase III, gamma/tau subunit"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR021029 InterPro:IPR022754
Pfam:PF12169 Pfam:PF12170 SMART:SM00382 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0017111
GO:GO:0003887 GO:GO:0009360 eggNOG:COG2812 KO:K02343
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 HOGENOM:HOG000083934
RefSeq:YP_270411.1 ProteinModelPortal:Q47XQ9 SMR:Q47XQ9
STRING:Q47XQ9 GeneID:3522410 KEGG:cps:CPS_3744 PATRIC:21470407
OMA:ICEFLAR BioCyc:CPSY167879:GI48-3766-MONOMER Uniprot:Q47XQ9
Length = 715
Score = 375 (137.1 bits), Expect = 3.9e-31, P = 3.9e-31
Identities = 83/238 (34%), Positives = 132/238 (55%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC- 355
L++K+RP F +L+GQ VV L +A+S+ + YLF G RG GKT+ +RIFA +LNC
Sbjct: 6 LARKWRPKNFQQLMGQEHVVNVLANALSQKRLHHAYLFTGTRGVGKTTIARIFAKSLNCE 65
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L + D KPCG C C GR D+ E+D+ + D ++ + P RFK+++
Sbjct: 66 LGITD-KPCGKCDACIDIDQGRFVDLLEIDAASKTKVDDTREILDNVQYAPSRGRFKVYL 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L ++ +L +LE +HV F++ T + KLP + LSR ++H + I
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFILATTDPQKLPITVLSRCLQFHLKALTVKQIE 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIG 532
+L I E ++ +Q L +A + GS+RD+ L DQ G+ I L+ +++G
Sbjct: 185 DKLAEILSHEQVSHEQGCLTLLAKAARGSMRDSLSLTDQAIAQGQGHINLTNIQQMLG 242
>TIGR_CMR|CPS_3744 [details] [associations]
symbol:CPS_3744 "DNA polymerase III, gamma/tau subunit"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR021029 InterPro:IPR022754
Pfam:PF12169 Pfam:PF12170 SMART:SM00382 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0017111
GO:GO:0003887 GO:GO:0009360 eggNOG:COG2812 KO:K02343
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 HOGENOM:HOG000083934
RefSeq:YP_270411.1 ProteinModelPortal:Q47XQ9 SMR:Q47XQ9
STRING:Q47XQ9 GeneID:3522410 KEGG:cps:CPS_3744 PATRIC:21470407
OMA:ICEFLAR BioCyc:CPSY167879:GI48-3766-MONOMER Uniprot:Q47XQ9
Length = 715
Score = 375 (137.1 bits), Expect = 3.9e-31, P = 3.9e-31
Identities = 83/238 (34%), Positives = 132/238 (55%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC- 355
L++K+RP F +L+GQ VV L +A+S+ + YLF G RG GKT+ +RIFA +LNC
Sbjct: 6 LARKWRPKNFQQLMGQEHVVNVLANALSQKRLHHAYLFTGTRGVGKTTIARIFAKSLNCE 65
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
L + D KPCG C C GR D+ E+D+ + D ++ + P RFK+++
Sbjct: 66 LGITD-KPCGKCDACIDIDQGRFVDLLEIDAASKTKVDDTREILDNVQYAPSRGRFKVYL 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L ++ +L +LE +HV F++ T + KLP + LSR ++H + I
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEHVKFILATTDPQKLPITVLSRCLQFHLKALTVKQIE 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGK-KITLSLAYELIG 532
+L I E ++ +Q L +A + GS+RD+ L DQ G+ I L+ +++G
Sbjct: 185 DKLAEILSHEQVSHEQGCLTLLAKAARGSMRDSLSLTDQAIAQGQGHINLTNIQQMLG 242
>TIGR_CMR|SPO_3550 [details] [associations]
symbol:SPO_3550 "DNA polymerase III, gamma and tau
subunits" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR022754 Pfam:PF12169 SMART:SM00382
GO:GO:0005524 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
ProtClustDB:PRK09111 InterPro:IPR022107 Pfam:PF12362
RefSeq:YP_168745.1 ProteinModelPortal:Q5LML3 GeneID:3193201
KEGG:sil:SPO3550 PATRIC:23380573 OMA:FTHLVTR Uniprot:Q5LML3
Length = 583
Score = 365 (133.5 bits), Expect = 2.0e-30, P = 2.0e-30
Identities = 81/234 (34%), Positives = 127/234 (54%)
Query: 287 ISTYSETPWS-LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSA 345
+S TP+ L++K+RP F +LVGQ+ +VR+L +A + + ++ G RGTGKT+
Sbjct: 1 MSDAPSTPYQVLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTT 60
Query: 346 SRIFAAALNCLSLEDQ-----KPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMK 400
+RI A +NC+ + +PCG C C GR DV E+D+ + + ++
Sbjct: 61 ARIIAKGMNCIGPDGNGGPTTEPCGKCEHCVAIMEGRHVDVMEMDAASRTGVNDIREIID 120
Query: 401 SAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSR 460
S S+R+KI+IIDE +L + +L +LE HV F+ T E+ K+P + LSR
Sbjct: 121 SVRYRAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSR 180
Query: 461 SQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ 514
Q++ +I+ D+ + +RRI E + AL I + GS RDA LLDQ
Sbjct: 181 CQRFDLRRIEPEDMIALMRRIADAEGAQIAEDALALIVRAAEGSARDATSLLDQ 234
>UNIPROTKB|Q9KT51 [details] [associations]
symbol:VC_1054 "DNA polymerase III, subunits gamma and tau"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0009360 "DNA
polymerase III complex" evidence=ISS] InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR021029
InterPro:IPR022754 Pfam:PF12169 Pfam:PF12170 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397 OMA:VQLYYQT
ProtClustDB:PRK07994 InterPro:IPR022001 Pfam:PF12168 HSSP:P06710
PIR:H82246 RefSeq:NP_230699.1 ProteinModelPortal:Q9KT51 SMR:Q9KT51
DNASU:2614324 GeneID:2614324 KEGG:vch:VC1054 PATRIC:20081206
Uniprot:Q9KT51
Length = 692
Score = 365 (133.5 bits), Expect = 4.5e-30, P = 4.5e-30
Identities = 80/238 (33%), Positives = 133/238 (55%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L++K+RP F E+VGQ+ V+ +L +A+++ + YLF G RG GKT+ R+FA LNC
Sbjct: 5 ALARKWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ PCG C C GR D+ E+D+ + + L+ + P RFK+++
Sbjct: 65 ETGITATPCGQCATCQEIDQGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYL 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L ++ +L +LE ++V F++ T + KLP + LSR ++H I +I
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKPISVENIQ 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLS-LAYELIG 532
+L ++ E I+ D AL+ +A ++GS+RDA L DQ LG + S + ++G
Sbjct: 185 QQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSLTDQAIALGNGVVKSDIVAHMLG 242
>TIGR_CMR|VC_1054 [details] [associations]
symbol:VC_1054 "DNA polymerase III, subunits gamma and tau"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR021029 InterPro:IPR022754
Pfam:PF12169 Pfam:PF12170 SMART:SM00382 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0017111
GO:GO:0003887 GO:GO:0009360 KO:K02343 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 OMA:VQLYYQT ProtClustDB:PRK07994
InterPro:IPR022001 Pfam:PF12168 HSSP:P06710 PIR:H82246
RefSeq:NP_230699.1 ProteinModelPortal:Q9KT51 SMR:Q9KT51
DNASU:2614324 GeneID:2614324 KEGG:vch:VC1054 PATRIC:20081206
Uniprot:Q9KT51
Length = 692
Score = 365 (133.5 bits), Expect = 4.5e-30, P = 4.5e-30
Identities = 80/238 (33%), Positives = 133/238 (55%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L++K+RP F E+VGQ+ V+ +L +A+++ + YLF G RG GKT+ R+FA LNC
Sbjct: 5 ALARKWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNC 64
Query: 356 LSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFI 415
+ PCG C C GR D+ E+D+ + + L+ + P RFK+++
Sbjct: 65 ETGITATPCGQCATCQEIDQGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARGRFKVYL 124
Query: 416 IDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIA 475
IDE +L ++ +L +LE ++V F++ T + KLP + LSR ++H I +I
Sbjct: 125 IDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKPISVENIQ 184
Query: 476 SRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLS-LAYELIG 532
+L ++ E I+ D AL+ +A ++GS+RDA L DQ LG + S + ++G
Sbjct: 185 QQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSLTDQAIALGNGVVKSDIVAHMLG 242
>UNIPROTKB|P06710 [details] [associations]
symbol:dnaX species:83333 "Escherichia coli K-12"
[GO:0006260 "DNA replication" evidence=IEA;IMP] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IDA] [GO:0043846 "DNA
polymerase III, clamp loader complex" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0030337 "DNA polymerase
processivity factor activity" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006200 "ATP catabolic process"
evidence=IDA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] UniProt:P06710 InterPro:IPR001270
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR021029 InterPro:IPR022754 Pfam:PF12169 Pfam:PF12170
PRINTS:PR00300 SMART:SM00382 GO:GO:0005524 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 EMBL:U82664 EMBL:X04487
EMBL:M38777 GO:GO:0003887 eggNOG:COG2812 KO:K02343 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 EMBL:X04275 PIR:A25549 RefSeq:NP_415003.1
RefSeq:YP_488761.1 PDB:1JR3 PDB:1NJF PDB:1NJG PDB:1XXH PDB:1XXI
PDB:2AYA PDB:3GLF PDB:3GLG PDB:3GLH PDB:3GLI PDBsum:1JR3
PDBsum:1NJF PDBsum:1NJG PDBsum:1XXH PDBsum:1XXI PDBsum:2AYA
PDBsum:3GLF PDBsum:3GLG PDBsum:3GLH PDBsum:3GLI
ProteinModelPortal:P06710 SMR:P06710 DIP:DIP-9464N IntAct:P06710
MINT:MINT-1222776 PRIDE:P06710 EnsemblBacteria:EBESCT00000003686
EnsemblBacteria:EBESCT00000015762 GeneID:12930852 GeneID:945105
KEGG:ecj:Y75_p0457 KEGG:eco:b0470 PATRIC:32116097 EchoBASE:EB0241
EcoGene:EG10245 HOGENOM:HOG000083934 OMA:VQLYYQT
ProtClustDB:PRK07994 BioCyc:EcoCyc:EG10245-MONOMER
BioCyc:EcoCyc:MONOMER0-2383 BioCyc:ECOL316407:JW0459-MONOMER
BindingDB:P06710 EvolutionaryTrace:P06710 Genevestigator:P06710
GO:GO:0043846 GO:GO:0030337 InterPro:IPR022001 Pfam:PF12168
Length = 643
Score = 355 (130.0 bits), Expect = 4.3e-29, P = 4.3e-29
Identities = 77/218 (35%), Positives = 119/218 (54%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L++K+RP F ++VGQ V+ +L + +S G + YLF G RG GKTS +R+ A LNC
Sbjct: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65
Query: 357 SLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFII 416
+ PCG+C C GR D+ E+D+ + + L+ + P RFK+++I
Sbjct: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLI 125
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIAS 476
DE +L ++ +L +LE +HV F++ T + KLP + LSR ++H + I
Sbjct: 126 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 185
Query: 477 RLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ 514
+L I EE I + AL +A + GS+RDA L DQ
Sbjct: 186 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQ 223
>UNIPROTKB|P63975 [details] [associations]
symbol:dnaX "DNA polymerase III subunit gamma/tau"
species:1773 "Mycobacterium tuberculosis" [GO:0040007 "growth"
evidence=IMP] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR022754 Pfam:PF12169 SMART:SM00382
GO:GO:0005524 GO:GO:0040007 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0003677 EMBL:BX842583 GO:GO:0006260
GO:GO:0017111 GO:GO:0003887 GO:GO:0009360 eggNOG:COG2812
HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
PIR:B70796 RefSeq:NP_218238.1 RefSeq:NP_338379.1
RefSeq:YP_006517213.1 ProteinModelPortal:P63975 SMR:P63975
PRIDE:P63975 EnsemblBacteria:EBMYCT00000002188
EnsemblBacteria:EBMYCT00000072154 GeneID:13317335 GeneID:885361
GeneID:922673 KEGG:mtc:MT3824 KEGG:mtu:Rv3721c KEGG:mtv:RVBD_3721c
PATRIC:18130168 TubercuList:Rv3721c OMA:IARVEPH
ProtClustDB:PRK14952 Uniprot:P63975
Length = 578
Score = 353 (129.3 bits), Expect = 4.3e-29, P = 4.3e-29
Identities = 83/243 (34%), Positives = 124/243 (51%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNC 355
+L +K+RP F E+VGQ V L A+ G + YLF GPRG GKTS++RI A +LNC
Sbjct: 2 ALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLNC 61
Query: 356 LSLEDQKPCGLCRECALFSSGR--SRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKI 413
PCG+C C + S DV E+D+ D L AF P SR+++
Sbjct: 62 AQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYRV 121
Query: 414 FIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGD 473
FI+DE ++ + +L +E +H++F+ T E +K+ + SR+ Y F +
Sbjct: 122 FIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRT 181
Query: 474 IASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKK---ITLSLAYEL 530
+ + L RIC +E + D A + GS RD +LDQL L G +T + A L
Sbjct: 182 MRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQL-LAGAADTHVTYTRALGL 240
Query: 531 IGI 533
+G+
Sbjct: 241 LGV 243
>UNIPROTKB|Q0C591 [details] [associations]
symbol:dnaX "DNA polymerase III, subunits gamma and tau"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006260 "DNA
replication" evidence=ISS] [GO:0009360 "DNA polymerase III complex"
evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR022754 Pfam:PF12169 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
EMBL:CP000158 GenomeReviews:CP000158_GR GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 RefSeq:YP_759102.1 STRING:Q0C591 GeneID:4289739
KEGG:hne:HNE_0372 PATRIC:32213536 OMA:TCARIVS ProtClustDB:PRK09111
BioCyc:HNEP228405:GI69-416-MONOMER InterPro:IPR022107 Pfam:PF12362
Uniprot:Q0C591
Length = 578
Score = 329 (120.9 bits), Expect = 2.1e-26, P = 2.1e-26
Identities = 91/337 (27%), Positives = 160/337 (47%)
Query: 297 LSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCL 356
L++K+RP F++L+GQ +VR+L +A G + ++ G RG GKT+ +R+ A LN
Sbjct: 32 LARKYRPRRFEDLIGQEAMVRTLSNAFETGRIAHGFMLTGVRGVGKTTTARLLARGLNYE 91
Query: 357 SLEDQK--------------PCGLCRECALFSSGRSRDVKEVDSV-RINRSDRVGSLMKS 401
D K P G C + R DV E+D+ R +D + L+ S
Sbjct: 92 PKADAKGKKGKAAGPSIHLDPPG--EHCDAIMASRHPDVLELDAASRTGVAD-MRDLLDS 148
Query: 402 AFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRS 461
A P S+R+K++IIDE +L ++ +L +LE H+ F+ T E+ K+P + LSR
Sbjct: 149 ARYGPVSARYKVYIIDEVHMLSNASFNALLKTLEEPPPHLKFIFATTEIRKVPVTVLSRC 208
Query: 462 QKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ---LSLL 518
Q++ ++ G+++ L + E N + AL IA + GS+RD LLDQ +
Sbjct: 209 QRFDLKRLDSGELSRHLGNVAQSEGANVSEEALALIARAAEGSVRDGLSLLDQGIVQTTD 268
Query: 519 GKKITLSLAYELIGIVXXXXXXXXXXXXXXXXXXNTVIRARELMRSKIDPMQLISQLANL 578
G++++ + ++G+ + RE + DP ++ + ++
Sbjct: 269 GEEVSGAAVRAMLGLGDRARLLDAVEKAVGGDAKGALAEVREQVAGGADPAVILKDILDI 328
Query: 579 IMDILAGKCL-EDCSEARKNFFGKHTSEADMQKLSRA 614
DI + +D ++A + T A Q+L+ A
Sbjct: 329 AADISVAQATGDDWTQAGPADWANRT-RALAQRLTPA 364
>UNIPROTKB|E7DN81 [details] [associations]
symbol:E7DN81 "DnaX DNA polymerase III clamp loader complex
gamma-tau-delta subunit" species:59241 "Streptococcus phage Dp-1"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR022754
Pfam:PF12169 SMART:SM00382 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 EMBL:HQ268735
RefSeq:YP_004306905.1 IntAct:E7DN81 GeneID:10358613 Uniprot:E7DN81
Length = 341
Score = 181 (68.8 bits), Expect = 1.8e-19, Sum P(2) = 1.8e-19
Identities = 42/156 (26%), Positives = 82/156 (52%)
Query: 383 EVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVV 442
E+D+ N + V ++++ + S FK++IIDE +L + +L +LE S V
Sbjct: 68 EIDAASNNGVENVRNIIEDSRYKSMDSEFKVYIIDEVHMLSTGAFNALLKTLEEPSSGTV 127
Query: 443 FVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEE-----AINFDQAALDFI 497
F++ T + K+P + LSR Q++ F +I + DI ++L+ I E ++++ AL FI
Sbjct: 128 FILCTTDPQKIPDTILSRVQRFDFTRIDNDDIVNQLQFIIESENEEGAGYSYERDALSFI 187
Query: 498 AAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIGI 533
+NG +RD+ L+++ + + +G+
Sbjct: 188 GKLANGGMRDSITRLEKVLDYSHHVDMEAVSNALGV 223
Score = 128 (50.1 bits), Expect = 1.8e-19, Sum P(2) = 1.8e-19
Identities = 26/59 (44%), Positives = 37/59 (62%)
Query: 296 SLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALN 354
+L+ K+RP F+E+V Q V LL+ + G + YLF G GTGKT+ +RIFA +N
Sbjct: 2 NLASKYRPQTFEEVVAQEYVKEILLNQLQNGAIKHGYLFCGGAGTGKTTTARIFAKDVN 60
>UNIPROTKB|F1NIY0 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000074917
EMBL:AADN02020726 IPI:IPI00574772 Ensembl:ENSGALT00000014162
ArrayExpress:F1NIY0 Uniprot:F1NIY0
Length = 359
Score = 206 (77.6 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 79/319 (24%), Positives = 136/319 (42%)
Query: 294 PWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAAL 353
PW +K+RP DE+ Q+ VV L ++ + + LF+GP GTGKTS I AAA
Sbjct: 37 PWV--EKYRPKNVDEVAFQDEVVAVLKKSLEGADLPNL-LFYGPPGTGKTST--ILAAAR 91
Query: 354 NCLSLEDQKPCGLCRECAL-FSSGRSRDVKEV-DSVR-INRSDRVGSLMKSAFLPPFSSR 410
E L R+ L ++ R ++ + + V+ + GS PPF
Sbjct: 92 ELFGPE------LFRQRVLELNASDERGIQVIREKVKAFAQLTASGSRADGKVCPPF--- 142
Query: 411 FKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIK 470
KI I+DE + A + ++E S+ F +I + ++ SR K+ F +
Sbjct: 143 -KIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLS 201
Query: 471 DGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL--GKKITLSLAY 528
D RL + +E + A+ ++ S+G +R A L + L GK+IT
Sbjct: 202 DKIQQQRLLDVSEKENVKITSEAVSYLVKVSDGDLRKAITYLQSATRLMGGKEITEKTVT 261
Query: 529 ELIGIVXXXXXXXXXXXXXXXXXXNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCL 588
E+ G++ A+ L+ QL++QL +++++
Sbjct: 262 EIAGVIPRETIDGLLSACSSGSFEKLETVAKNLINEGYAVAQLVNQLHDIVVES------ 315
Query: 589 EDCSEARKNFFGKHTSEAD 607
ED S+ +K+ + +E D
Sbjct: 316 EDFSDKQKSIIVEKLAEVD 334
>UNIPROTKB|F1NEW1 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000074917 OMA:QQLSQNC
EMBL:AADN02020726 IPI:IPI00819051 PRIDE:F1NEW1
Ensembl:ENSGALT00000039711 ArrayExpress:F1NEW1 Uniprot:F1NEW1
Length = 362
Score = 206 (77.6 bits), Expect = 1.9e-13, P = 1.9e-13
Identities = 79/319 (24%), Positives = 136/319 (42%)
Query: 294 PWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAAL 353
PW +K+RP DE+ Q+ VV L ++ + + LF+GP GTGKTS I AAA
Sbjct: 37 PWV--EKYRPKNVDEVAFQDEVVAVLKKSLEGADLPNL-LFYGPPGTGKTST--ILAAAR 91
Query: 354 NCLSLEDQKPCGLCRECAL-FSSGRSRDVKEV-DSVR-INRSDRVGSLMKSAFLPPFSSR 410
E L R+ L ++ R ++ + + V+ + GS PPF
Sbjct: 92 ELFGPE------LFRQRVLELNASDERGIQVIREKVKAFAQLTASGSRADGKVCPPF--- 142
Query: 411 FKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIK 470
KI I+DE + A + ++E S+ F +I + ++ SR K+ F +
Sbjct: 143 -KIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLS 201
Query: 471 DGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL--GKKITLSLAY 528
D RL + +E + A+ ++ S+G +R A L + L GK+IT
Sbjct: 202 DKIQQQRLLDVSEKENVKITSEAVSYLVKVSDGDLRKAITYLQSATRLMGGKEITEKTVT 261
Query: 529 ELIGIVXXXXXXXXXXXXXXXXXXNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCL 588
E+ G++ A+ L+ QL++QL +++++
Sbjct: 262 EIAGVIPRETIDGLLSACSSGSFEKLETVAKNLINEGYAVAQLVNQLHDIVVES------ 315
Query: 589 EDCSEARKNFFGKHTSEAD 607
ED S+ +K+ + +E D
Sbjct: 316 EDFSDKQKSIIVEKLAEVD 334
>GENEDB_PFALCIPARUM|PFB0840w [details] [associations]
symbol:PFB0840w "replication factor C, subunit
2" species:5833 "Plasmodium falciparum" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 EMBL:AE001362 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 HOGENOM:HOG000224154 HSSP:Q8U4J3
PIR:H71604 RefSeq:XP_001349685.1 ProteinModelPortal:O96260
PRIDE:O96260 EnsemblProtists:PFB0840w:mRNA GeneID:812767
KEGG:pfa:PFB0840w EuPathDB:PlasmoDB:PF3D7_0218000 OMA:DPIFSRC
ProtClustDB:CLSZ2432483 Uniprot:O96260
Length = 330
Score = 183 (69.5 bits), Expect = 5.3e-11, P = 5.3e-11
Identities = 64/241 (26%), Positives = 108/241 (44%)
Query: 294 PWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAAL 353
PW +K+RP D++V QN V +L + R +FHGP GTGKTSA A L
Sbjct: 5 PWV--EKYRPKRLDDIVHQNNAVM-MLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHEL 61
Query: 354 NCLSLEDQKPCGL-CRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFK 412
++ L + + R + +K + I+++ ++ S K LP + K
Sbjct: 62 FGKENISERVLELNASDDRGINVVREK-IKAYTRISISKN-KIHSETKEV-LPSW----K 114
Query: 413 IFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDG 472
+ ++DE ++ + + + +E S F++I + K+ SR Y F I
Sbjct: 115 LVVLDEADMMTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIFSRCSCYRFQSIPIN 174
Query: 473 DIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIG 532
+L IC E I+ AL+ I + G +R A +L S + KITL+ ++ G
Sbjct: 175 IKKEKLLYICQNENIDIVDDALEKIIETTEGDLRRAVSILQLCSCINTKITLNSVLDVSG 234
Query: 533 I 533
+
Sbjct: 235 L 235
>UNIPROTKB|O96260 [details] [associations]
symbol:PFB0840w "Replication factor C, subunit 2"
species:36329 "Plasmodium falciparum 3D7" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 EMBL:AE001362 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 HOGENOM:HOG000224154 HSSP:Q8U4J3
PIR:H71604 RefSeq:XP_001349685.1 ProteinModelPortal:O96260
PRIDE:O96260 EnsemblProtists:PFB0840w:mRNA GeneID:812767
KEGG:pfa:PFB0840w EuPathDB:PlasmoDB:PF3D7_0218000 OMA:DPIFSRC
ProtClustDB:CLSZ2432483 Uniprot:O96260
Length = 330
Score = 183 (69.5 bits), Expect = 5.3e-11, P = 5.3e-11
Identities = 64/241 (26%), Positives = 108/241 (44%)
Query: 294 PWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAAL 353
PW +K+RP D++V QN V +L + R +FHGP GTGKTSA A L
Sbjct: 5 PWV--EKYRPKRLDDIVHQNNAVM-MLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHEL 61
Query: 354 NCLSLEDQKPCGL-CRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFK 412
++ L + + R + +K + I+++ ++ S K LP + K
Sbjct: 62 FGKENISERVLELNASDDRGINVVREK-IKAYTRISISKN-KIHSETKEV-LPSW----K 114
Query: 413 IFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDG 472
+ ++DE ++ + + + +E S F++I + K+ SR Y F I
Sbjct: 115 LVVLDEADMMTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIFSRCSCYRFQSIPIN 174
Query: 473 DIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLAYELIG 532
+L IC E I+ AL+ I + G +R A +L S + KITL+ ++ G
Sbjct: 175 IKKEKLLYICQNENIDIVDDALEKIIETTEGDLRRAVSILQLCSCINTKITLNSVLDVSG 234
Query: 533 I 533
+
Sbjct: 235 L 235
>UNIPROTKB|F1SFI3 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000074917 OMA:QQLSQNC
EMBL:CU633961 Ensembl:ENSSSCT00000012916 Uniprot:F1SFI3
Length = 366
Score = 183 (69.5 bits), Expect = 7.7e-11, P = 7.7e-11
Identities = 75/317 (23%), Positives = 129/317 (40%)
Query: 294 PWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAAL 353
PW +K+RP DE+ Q VV L ++ + + LF+GP GTGKTS I AAA
Sbjct: 39 PWV--EKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNL-LFYGPPGTGKTST--ILAAAR 93
Query: 354 NCLSLEDQKPCGLCRECAL-FSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFK 412
E L R L ++ R ++ V N + S +S FK
Sbjct: 94 ELFGPE------LFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSEISGKPCPPFK 147
Query: 413 IFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDG 472
I I+DE + A + ++E S+ F +I + ++ SR K+ F + D
Sbjct: 148 IVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDK 207
Query: 473 DIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL--GKKITLSLAYEL 530
RL I +E + + ++ S G +R A L + L GK++T + ++
Sbjct: 208 IQQQRLLDIADKEHVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEVTEKMITDI 267
Query: 531 IGIVXXXXXXXXXXXXXXXXXXNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCLED 590
G+V + +++ ID +Q N + D++ ++
Sbjct: 268 AGVVPTETIDGVLAACQSGSFD----KLEAVVKDLIDEGHAATQFVNQLHDVVVEN--DN 321
Query: 591 CSEARKNFFGKHTSEAD 607
S+ +K+ + +EAD
Sbjct: 322 LSDKQKSVITEKLAEAD 338
>TIGR_CMR|DET_0535 [details] [associations]
symbol:DET_0535 "DNA polymerase III, delta prime subunit"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] EMBL:CP000027 GenomeReviews:CP000027_GR
eggNOG:COG0470 GO:GO:0003887 KO:K02341 RefSeq:YP_181279.1
ProteinModelPortal:Q3Z920 STRING:Q3Z920 GeneID:3230147
KEGG:det:DET0535 PATRIC:21608137 HOGENOM:HOG000192593 OMA:AFIKIDQ
ProtClustDB:CLSK935628 BioCyc:DETH243164:GJNF-535-MONOMER
Uniprot:Q3Z920
Length = 339
Score = 181 (68.8 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 47/166 (28%), Positives = 83/166 (50%)
Query: 308 ELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLC 367
+++GQ+ V L +++++ + Y+F+G G GK + FA ALNC + PC C
Sbjct: 3 QIIGQDKAVSFLCNSLNQDKLCHAYVFYGQSGVGKKRMALSFAQALNCQAASP--PCQEC 60
Query: 368 RECALFSSGRSRDVKEVDSVRI-NRSD----------RVGSLMKSAFLPPFSSRFKIFII 416
C +G DV ++ + + SD +V + +A LPPF ++K+FII
Sbjct: 61 PVCERIMAGNFPDVIHIELLSAEDSSDGKAKAEIGVKQVEDIQHAASLPPFEGKYKVFII 120
Query: 417 DECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQ 462
+ + L E+ +L +LE +F+++T + L + LSR Q
Sbjct: 121 HQAEKLSVESSNRLLKTLEEPGSQNIFILLTADKSLLLPTVLSRCQ 166
>CGD|CAL0003213 [details] [associations]
symbol:RCF3 species:5476 "Candida albicans" [GO:0005663 "DNA
replication factor C complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0031390 "Ctf18 RFC-like complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0031391 "Elg1 RFC-like
complex" evidence=IEA] [GO:0031389 "Rad17 RFC-like complex"
evidence=IEA] [GO:0006272 "leading strand elongation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0000077
"DNA damage checkpoint" evidence=IEA] [GO:0003689 "DNA clamp loader
activity" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 CGD:CAL0003213 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 KO:K10756 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 Pfam:PF08542 HOGENOM:HOG000224152 EMBL:AACQ01000224
RefSeq:XP_710951.1 ProteinModelPortal:Q59ML2 SMR:Q59ML2
STRING:Q59ML2 GeneID:3647440 KEGG:cal:CaO19.3211 Uniprot:Q59ML2
Length = 361
Score = 181 (68.8 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 58/220 (26%), Positives = 101/220 (45%)
Query: 290 YSETP-WSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRI 348
Y P +S +K+RP+ +E+ GQ +V ++ + G + LF+GP GTGKTS I
Sbjct: 17 YDTNPLFSRVEKYRPDSLEEVKGQQEIVDTVRKFVETGKLPHL-LFYGPSGTGKTST--I 73
Query: 349 FAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFS 408
A A + K + E S R DV + ++ S R K+ +
Sbjct: 74 IALAKEIYGATNYK--NMILELNA-SDDRGIDVVR-NQIKNFASTRQ-IFTKNTSQTASN 128
Query: 409 SRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPK 468
++FK+ I+DE + ++ +E +++ F ++ KL + +SR ++ F
Sbjct: 129 NQFKLIILDEADAMTNVAQNSLRRVIEKFTKNCRFCILANYSHKLNPALISRCTRFRFTP 188
Query: 469 IKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDA 508
I I RL + ++E +N A+D + SNG +R A
Sbjct: 189 IDISAIKDRLNTVIIKENVNISPEAIDALLKLSNGDMRRA 228
>UNIPROTKB|E2R2M6 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 KO:K10755 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 CTD:5984 OMA:ICFRGTF
GeneTree:ENSGT00550000074917 EMBL:AAEX03017297 RefSeq:XP_535837.1
Ensembl:ENSCAFT00000021708 GeneID:478667 KEGG:cfa:478667
NextBio:20853970 Uniprot:E2R2M6
Length = 363
Score = 181 (68.8 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 78/319 (24%), Positives = 133/319 (41%)
Query: 294 PWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAAL 353
PW +K+RP DE+ Q VV L ++ + + LF+GP GTGKTS I AAA
Sbjct: 38 PWV--EKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNL-LFYGPPGTGKTST--ILAAAR 92
Query: 354 NCLSLEDQKPCGLCRECAL-FSSGRSRDVKEV-DSVRINRSDRV-GSLMKSAFLPPFSSR 410
E L R L ++ R ++ V + V+ V GS PPF
Sbjct: 93 ELFGPE------LFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPF--- 143
Query: 411 FKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIK 470
KI I+DE + A + ++E S+ F +I + ++ SR K+ F +
Sbjct: 144 -KIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLS 202
Query: 471 DGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL--GKKITLSLAY 528
D RL I +E + + ++ S G +R A L + L GK+IT +
Sbjct: 203 DKIQQQRLLDIADKEHVKVSNEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVIT 262
Query: 529 ELIGIVXXXXXXXXXXXXXXXXXXNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCL 588
++ G++ ++L+ QL+SQ +++++
Sbjct: 263 DIAGVIPAGTIDGIFAACQSGSFDKLEAVVKDLIDEGHAATQLVSQFHDVVVEN------ 316
Query: 589 EDCSEARKNFFGKHTSEAD 607
++ S+ +K+ + +EAD
Sbjct: 317 DNLSDKQKSIITEKLAEAD 335
>UNIPROTKB|P35249 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IDA] [GO:0048015 "phosphatidylinositol-mediated
signaling" evidence=NAS] [GO:0006260 "DNA replication"
evidence=NAS;TAS] [GO:0006281 "DNA repair" evidence=NAS;TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0000075 "cell cycle checkpoint"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0000722 "telomere maintenance via recombination" evidence=TAS]
[GO:0000723 "telomere maintenance" evidence=TAS] Reactome:REACT_216
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0003677 EMBL:CH471052
GO:GO:0017111 GO:GO:0048015 GO:GO:0000084 KO:K10755 eggNOG:COG0470
GO:GO:0000075 GO:GO:0000722 Reactome:REACT_383 GO:GO:0006283
GO:GO:0006271 GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019
GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542 CTD:5984
HOGENOM:HOG000224154 EMBL:M87339 EMBL:AF538718 EMBL:BT006987
EMBL:CR536561 EMBL:BC017452 EMBL:BC024022 IPI:IPI00017381
PIR:A45253 RefSeq:NP_002907.1 RefSeq:NP_853551.1 UniGene:Hs.732098
ProteinModelPortal:P35249 SMR:P35249 DIP:DIP-24267N IntAct:P35249
MINT:MINT-1485723 STRING:P35249 PhosphoSite:P35249 DMDM:1703052
PaxDb:P35249 PeptideAtlas:P35249 PRIDE:P35249 DNASU:5984
Ensembl:ENST00000296273 Ensembl:ENST00000392481 GeneID:5984
KEGG:hsa:5984 UCSC:uc003fqz.3 GeneCards:GC03M186507 HGNC:HGNC:9972
HPA:CAB004557 MIM:102577 neXtProt:NX_P35249 PharmGKB:PA34341
InParanoid:P35249 OMA:QQLSQNC PhylomeDB:P35249 ChiTaRS:RFC4
GenomeRNAi:5984 NextBio:23297 ArrayExpress:P35249 Bgee:P35249
CleanEx:HS_RFC4 Genevestigator:P35249 GermOnline:ENSG00000163918
Uniprot:P35249
Length = 363
Score = 181 (68.8 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 79/319 (24%), Positives = 130/319 (40%)
Query: 294 PWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAAL 353
PW +K+RP DE+ Q VV L ++ + + LF+GP GTGKTS I AAA
Sbjct: 39 PWV--EKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNL-LFYGPPGTGKTST--ILAAAR 93
Query: 354 NCLSLEDQKPCGLCRECAL-FSSGRSRDVKEV-DSVRINRSDRV-GSLMKSAFLPPFSSR 410
E L R L ++ R ++ V + V+ V GS PPF
Sbjct: 94 ELFGPE------LFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPF--- 144
Query: 411 FKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIK 470
KI I+DE + A + ++E S+ F +I + ++ SR K+ F +
Sbjct: 145 -KIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLS 203
Query: 471 DGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL--GKKITLSLAY 528
D RL I +E + + ++ S G +R A L + L GK+IT +
Sbjct: 204 DKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVIT 263
Query: 529 ELIGIVXXXXXXXXXXXXXXXXXXNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCL 588
++ G++ + +++ ID +QL N + D++ L
Sbjct: 264 DIAGVIPAEKIDGVFAACQSGSFD----KLEAVVKDLIDEGHAATQLVNQLHDVVVENNL 319
Query: 589 EDCSEARKNFFGKHTSEAD 607
D +K+ + +E D
Sbjct: 320 SD---KQKSIITEKLAEVD 335
>RGD|1310142 [details] [associations]
symbol:Rfc4 "replication factor C (activator 1) 4" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 RGD:1310142
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 KO:K10755
eggNOG:COG0470 EMBL:CH473999 SUPFAM:SSF48019 HOVERGEN:HBG002053
Pfam:PF08542 CTD:5984 HOGENOM:HOG000224154
GeneTree:ENSGT00550000074917 OrthoDB:EOG4Q58PN EMBL:BC168166
IPI:IPI00370513 RefSeq:NP_001099339.1 UniGene:Rn.17046
STRING:B4F778 Ensembl:ENSRNOT00000002487 GeneID:288003
KEGG:rno:288003 UCSC:RGD:1310142 OMA:INIPHED NextBio:627397
Genevestigator:B4F778 Uniprot:B4F778
Length = 364
Score = 181 (68.8 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 82/341 (24%), Positives = 137/341 (40%)
Query: 272 TAHYGRSGHKLINNEISTYSETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSF 331
T G S + E PW +K+RP DE+ Q VV L ++ + +
Sbjct: 17 TKERGISSSAGSSGETKKVKPVPWV--EKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNL 74
Query: 332 YLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECAL-FSSGRSRDVKEV-DSVRI 389
LF+GP GTGKTS I AAA E L R L ++ R ++ V + V+
Sbjct: 75 -LFYGPPGTGKTST--ILAAARELFGPE------LFRLRVLELNASDERGIQVVREKVKN 125
Query: 390 NRSDRV-GSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITP 448
V GS PPF KI I+DE + A + ++E S+ F +I
Sbjct: 126 FAQLTVSGSRSDGKPCPPF----KIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 181
Query: 449 ELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDA 508
+ ++ SR K+ F + D RL I +E + + ++ S G +R A
Sbjct: 182 YVSRIIEPLTSRCSKFRFKPLSDKIQQKRLLDIAEKENVKIGDEEIAYLVRISEGDLRKA 241
Query: 509 EMLLDQLSLL--GKKITLSLAYELIGIVXXXXXXXXXXXXXXXXXXNTVIRARELMRSKI 566
L + L GK+I+ + ++ G++ + ++++ I
Sbjct: 242 ITFLQSATRLTGGKEISEDVITDIAGVIPAATIEGIVTACHSGSFD----KLEAVLKNLI 297
Query: 567 DPMQLISQLANLIMDILAGKCLEDCSEARKNFFGKHTSEAD 607
D +QL N + D + E+ S+ +K+ + +E D
Sbjct: 298 DEGHAATQLVNQLHDSIIED--ENLSDKQKSIITEKLAEVD 336
>MGI|MGI:2146571 [details] [associations]
symbol:Rfc4 "replication factor C (activator 1) 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 MGI:MGI:2146571
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542 CTD:5984
HOGENOM:HOG000224154 GeneTree:ENSGT00550000074917 EMBL:AK146954
EMBL:BC003335 IPI:IPI00319874 RefSeq:NP_663455.1 UniGene:Mm.386835
ProteinModelPortal:Q99J62 SMR:Q99J62 IntAct:Q99J62 STRING:Q99J62
PhosphoSite:Q99J62 PaxDb:Q99J62 PRIDE:Q99J62
Ensembl:ENSMUST00000023598 GeneID:106344 KEGG:mmu:106344
UCSC:uc007yth.1 OrthoDB:EOG4Q58PN NextBio:358165 Bgee:Q99J62
CleanEx:MM_RFC4 Genevestigator:Q99J62 GermOnline:ENSMUSG00000022881
Uniprot:Q99J62
Length = 364
Score = 180 (68.4 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 78/329 (23%), Positives = 134/329 (40%)
Query: 284 NNEISTYSETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKT 343
+ E PW +K+RP DE+ Q+ VV L ++ + + LF+GP GTGKT
Sbjct: 29 SGETKKVKPVPWV--EKYRPKCVDEVAFQDEVVAVLRKSLEGADLPNL-LFYGPPGTGKT 85
Query: 344 SASRIFAAALNCLSLEDQKPCGLCRECAL-FSSGRSRDVKEV-DSVRINRSDRV-GSLMK 400
S I AAA E L R L ++ R ++ V + V+ V GS
Sbjct: 86 ST--ILAAARELFGPE------LFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSD 137
Query: 401 SAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSR 460
PPF KI I+DE + A + ++E S+ F +I + ++ SR
Sbjct: 138 GKPCPPF----KIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSR 193
Query: 461 SQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL-- 518
K+ F + D RL I +E + + ++ S G +R A L + L
Sbjct: 194 CSKFRFKPLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTG 253
Query: 519 GKKITLSLAYELIGIVXXXXXXXXXXXXXXXXXXNTVIRARELMRSKIDPMQLISQLANL 578
GK+++ + ++ G++ + ++++ ID +QL N
Sbjct: 254 GKEVSEDVITDIAGVIPAATIDGIFTACHSGSFD----KLEAVVKNLIDEGHAATQLVNQ 309
Query: 579 IMDILAGKCLEDCSEARKNFFGKHTSEAD 607
+ D + E+ S+ K+ + +E D
Sbjct: 310 LHDAIIEN--ENLSDKHKSIITEKLAEVD 336
>ZFIN|ZDB-GENE-040824-3 [details] [associations]
symbol:rfc4 "replication factor C (activator 1) 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0060041 "retina development in
camera-type eye" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 ZFIN:ZDB-GENE-040824-3 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0060041 GO:GO:0017111 KO:K10755
eggNOG:COG0470 SUPFAM:SSF48019 HOVERGEN:HBG002053 Pfam:PF08542
CTD:5984 HOGENOM:HOG000224154 OMA:ICFRGTF OrthoDB:EOG4Q58PN
EMBL:AY648805 IPI:IPI00506924 RefSeq:NP_999902.2 UniGene:Dr.77554
ProteinModelPortal:Q6DRF4 STRING:Q6DRF4 PRIDE:Q6DRF4 GeneID:406435
KEGG:dre:406435 NextBio:20818031 ArrayExpress:Q6DRF4 Bgee:Q6DRF4
Uniprot:Q6DRF4
Length = 358
Score = 178 (67.7 bits), Expect = 2.6e-10, P = 2.6e-10
Identities = 75/319 (23%), Positives = 133/319 (41%)
Query: 294 PWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAAL 353
PW +K+RP DE+ Q VV L ++ + + LF+GP GTGKTS I AAA
Sbjct: 34 PWV--EKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNL-LFYGPPGTGKTST--ILAAAR 88
Query: 354 NCLSLEDQKPCGLCRECAL-FSSGRSRDVKEV-DSV-RINRSDRVGSLMKSAFLPPFSSR 410
+ L R+ L ++ R ++ V + V R + G+ PPF
Sbjct: 89 ELYGPD------LYRQRVLELNASDERGIQVVREKVKRFAQLTVAGTRPDGKTCPPF--- 139
Query: 411 FKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIK 470
KI I+DE + A + ++E S+ F +I + ++ SR K+ F +
Sbjct: 140 -KIIILDEADSMTSAAQAALRRTMEKESRTTRFCLICNYVSRIIEPLTSRCSKFRFKPLA 198
Query: 471 DGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLG--KKITLSLAY 528
+ R+ IC +E + + +D + S G +R A L + L ++IT
Sbjct: 199 NDVQQERILEICRKENLKYTTEGVDALVRVSEGDLRKAITFLQSGARLNSEREITEQTII 258
Query: 529 ELIGIVXXXXXXXXXXXXXXXXXXNTVIRARELMRSKIDPMQLISQLANLIMDILAGKCL 588
E+ G+V + ++++ L++QL ++I++
Sbjct: 259 EIAGVVPPKVIQSLLHICYKGTFEKLEVAVKDMIDQGYAATNLLNQLHDVIIE------- 311
Query: 589 EDCSEARKNFFGKHTSEAD 607
E S+ +K+ + +E D
Sbjct: 312 EQLSDKQKSVITEKMAEVD 330
>DICTYBASE|DDB_G0286027 [details] [associations]
symbol:rfc4 "replication factor C subunit 4"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003689 "DNA
clamp loader activity" evidence=ISS] [GO:0031391 "Elg1 RFC-like
complex" evidence=ISS] [GO:0031389 "Rad17 RFC-like complex"
evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
[GO:0006272 "leading strand elongation" evidence=ISS] [GO:0005663
"DNA replication factor C complex" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 dictyBase:DDB_G0286027 GO:GO:0005524
GO:GO:0005634 GenomeReviews:CM000153_GR GO:GO:0003677 GO:GO:0006298
EMBL:AAFI02000085 GO:GO:0017111 KO:K10755 eggNOG:COG0470
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
GO:GO:0031389 Pfam:PF08542 RefSeq:XP_637900.1 HSSP:O28219
ProteinModelPortal:Q54MD4 STRING:Q54MD4 EnsemblProtists:DDB0232233
GeneID:8625410 KEGG:ddi:DDB_G0286027 OMA:SANDIVQ
ProtClustDB:CLSZ2430137 Uniprot:Q54MD4
Length = 347
Score = 170 (64.9 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 62/251 (24%), Positives = 108/251 (43%)
Query: 285 NEISTYSETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTS 344
++I PW K+RP D++ Q V+ +L +++ G + LF+GP GTGKTS
Sbjct: 2 SKIQKKDTEPWVA--KYRPKTVDDVSYQEDVISALKKSLNTGNLPHL-LFYGPPGTGKTS 58
Query: 345 ASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFL 404
I A A++ E K R L +S D + ++ VR + G +
Sbjct: 59 T--ILAIAMDIYGPELMKQ----RVLELNAS----DERGIEVVRTKIKNFAGYAVNKTTT 108
Query: 405 PPFS--SRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQ 462
+ + FK+ I+DE + + A + ++E S+ F ++ + ++ SR
Sbjct: 109 GTSNPGATFKLIILDEADSMTTDAQAALRRTIETTSKTTRFCLLCNYISRIIDPLASRCA 168
Query: 463 KYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQ-LSLLGKK 521
K+ F + RL+ I +E I +++ I SNG +R A L K
Sbjct: 169 KFRFKPLDTVATIERLKFISQQEGIKCEESVYQAIQVVSNGDMRKAITYLQSAFRFFANK 228
Query: 522 ITLSLAYELIG 532
I+ + Y + G
Sbjct: 229 ISEDVIYNIAG 239
>ZFIN|ZDB-GENE-040907-1 [details] [associations]
symbol:rfc5 "replication factor C (activator 1) 5"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0060041 "retina development in camera-type eye" evidence=IMP]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
ZFIN:ZDB-GENE-040907-1 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0060041 KO:K10756 GO:GO:0017111 SUPFAM:SSF48019
HOVERGEN:HBG002053 Pfam:PF08542 GeneTree:ENSGT00550000075072
OMA:ILACARQ CTD:5985 EMBL:CU207223 EMBL:AY648755 IPI:IPI00505315
RefSeq:NP_001003862.1 UniGene:Dr.151058 SMR:Q6DRK4 STRING:Q6DRK4
Ensembl:ENSDART00000051670 GeneID:445385 KEGG:dre:445385
InParanoid:Q6DRK4 NextBio:20832089 Uniprot:Q6DRK4
Length = 334
Score = 127 (49.8 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 48/201 (23%), Positives = 84/201 (41%)
Query: 333 LFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRS 392
LF+GP GTGKTS I A A +D++ + E + D + +D VR
Sbjct: 51 LFYGPPGTGKTST--ILACARQLY--KDKEFNSMVLEL------NASDDRGIDVVR---- 96
Query: 393 DRVGSLMKSAFLPP-FSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELD 451
G ++ A F FK+ I+DE + + + +E +++ F +I L
Sbjct: 97 ---GPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLS 153
Query: 452 KLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEML 511
K+ + SR ++ F + + RL + +E+I+ + I S G +R + +
Sbjct: 154 KIIPALQSRCTRFRFGPLSQNQMIPRLEHVIQQESIDITPDGMKAIVTLSTGDMRRSLNI 213
Query: 512 LDQLSLLGKKITLSLAYELIG 532
L + K+T Y G
Sbjct: 214 LQSTHMAYGKVTEETVYTCTG 234
Score = 90 (36.7 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 22/59 (37%), Positives = 32/59 (54%)
Query: 294 PWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAA 352
PW +K+RP D+L+ ++ ++ IS + LF+GP GTGKTS I A A
Sbjct: 15 PWV--EKYRPQTLDDLISHQDILSTIQKFISEDRLPHL-LFYGPPGTGKTST--ILACA 68
>UNIPROTKB|C9JZI1 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 EMBL:AC112907 Pfam:PF08542 HOGENOM:HOG000224154
HGNC:HGNC:9972 ChiTaRS:RFC4 IPI:IPI00925945
ProteinModelPortal:C9JZI1 SMR:C9JZI1 STRING:C9JZI1
Ensembl:ENST00000433496 ArrayExpress:C9JZI1 Bgee:C9JZI1
Uniprot:C9JZI1
Length = 336
Score = 168 (64.2 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 68/244 (27%), Positives = 105/244 (43%)
Query: 294 PWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAAL 353
PW +K+RP DE+ Q VV L ++ + + LF+GP GTGKTS I AAA
Sbjct: 39 PWV--EKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNL-LFYGPPGTGKTST--ILAAAR 93
Query: 354 NCLSLEDQKPCGLCRECAL-FSSGRSRDVKEV-DSVRINRSDRV-GSLMKSAFLPPFSSR 410
E L R L ++ R ++ V + V+ V GS PPF
Sbjct: 94 ELFGPE------LFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPF--- 144
Query: 411 FKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIK 470
KI I+DE + A + ++E S+ F +I + ++ SR K+ F +
Sbjct: 145 -KIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLS 203
Query: 471 DGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL--GKKITLSLAY 528
D RL I +E + + ++ S G +R A L + L GK+IT +
Sbjct: 204 DKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVIT 263
Query: 529 ELIG 532
++ G
Sbjct: 264 DIAG 267
>WB|WBGene00018409 [details] [associations]
symbol:F44B9.8 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0009378 "four-way
junction helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0009360 "DNA polymerase III complex" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0003677 GO:GO:0006260 KO:K10756
GO:GO:0017111 eggNOG:COG0470 EMBL:FO080400 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224152 OMA:VIAFHER
GeneTree:ENSGT00550000075072 PIR:S44809 RefSeq:NP_498750.2
ProteinModelPortal:P34429 SMR:P34429 DIP:DIP-27001N IntAct:P34429
MINT:MINT-1095598 STRING:P34429 PaxDb:P34429 EnsemblMetazoa:F44B9.8
GeneID:176131 KEGG:cel:CELE_F44B9.8 UCSC:F44B9.8 CTD:176131
WormBase:F44B9.8 InParanoid:P34429 NextBio:891256 Uniprot:P34429
Length = 368
Score = 167 (63.8 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 59/245 (24%), Positives = 101/245 (41%)
Query: 288 STYSETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASR 347
+T S PW +K+RP+ DELV +V++L I + LF+GP GTGKT+
Sbjct: 24 TTASNLPWV--EKYRPSKLDELVAHEQIVKTLTKFIENRTLPHL-LFYGPPGTGKTTT-- 78
Query: 348 IFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPF 407
+ AAA S P + ++ R + V + +N + G S
Sbjct: 79 VLAAARQMYS-----PTKMASMVLELNASDERGIDVVRNTIVNFAQTKGLQAFSTSSNTG 133
Query: 408 SSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFP 467
+ FK+ I+DE + + + +E + +V F +I L + + SR ++ F
Sbjct: 134 TVPFKLVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIVPAIQSRCTRFRFA 193
Query: 468 KIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLA 527
+ I RL I E + D + S G +R L ++ ++ +
Sbjct: 194 PLDQKLIVPRLEYIVETEQLKMTPDGKDALLIVSKGDMRTVINTLQSTAMSFDTVSENTV 253
Query: 528 YELIG 532
Y+ IG
Sbjct: 254 YQCIG 258
>UNIPROTKB|Q29RS9 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542
CTD:5984 HOGENOM:HOG000224154 GeneTree:ENSGT00550000074917
OMA:QQLSQNC EMBL:DAAA02001847 EMBL:DAAA02001846 EMBL:BC114041
IPI:IPI00728867 RefSeq:NP_001039359.1 UniGene:Bt.102331
STRING:Q29RS9 Ensembl:ENSBTAT00000045810 GeneID:504637
KEGG:bta:504637 NextBio:20866768 Uniprot:Q29RS9
Length = 337
Score = 166 (63.5 bits), Expect = 4.8e-09, P = 4.8e-09
Identities = 67/244 (27%), Positives = 105/244 (43%)
Query: 294 PWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAAL 353
PW +K+RP DE+ Q VV L ++ + + LF+GP GTGKTS I AAA
Sbjct: 39 PWV--EKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNL-LFYGPPGTGKTST--ILAAAR 93
Query: 354 NCLSLEDQKPCGLCRECAL-FSSGRSRDVKEV-DSVRINRSDRV-GSLMKSAFLPPFSSR 410
E L R L ++ R ++ V + V+ V GS PPF
Sbjct: 94 ELFGPE------LFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPF--- 144
Query: 411 FKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIK 470
KI I+DE + A + ++E S+ F +I + ++ SR K+ F +
Sbjct: 145 -KIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLS 203
Query: 471 DGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL--GKKITLSLAY 528
D RL I +E + + ++ S G +R A L + L GK++T +
Sbjct: 204 DKIQQQRLLDIADKEHVKISNEGIAYLVQVSEGDLRKAITFLQSATRLTGGKEVTEKVIT 263
Query: 529 ELIG 532
++ G
Sbjct: 264 DIAG 267
>ASPGD|ASPL0000017750 [details] [associations]
symbol:AN8064 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003689 "DNA clamp
loader activity" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=IEA] [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0031390
"Ctf18 RFC-like complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0031391 "Elg1 RFC-like complex" evidence=IEA]
[GO:0031389 "Rad17 RFC-like complex" evidence=IEA] [GO:0006272
"leading strand elongation" evidence=IEA] [GO:0007062 "sister
chromatid cohesion" evidence=IEA] [GO:0000077 "DNA damage
checkpoint" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:BN001302 KO:K10756
GO:GO:0017111 eggNOG:COG0470 EMBL:AACD01000139 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224152 OrthoDB:EOG4K0TX8 OMA:ILACARQ
RefSeq:XP_681333.1 ProteinModelPortal:Q5AUG6 STRING:Q5AUG6
EnsemblFungi:CADANIAT00004090 GeneID:2869010 KEGG:ani:AN8064.2
Uniprot:Q5AUG6
Length = 398
Score = 171 (65.3 bits), Expect = 8.0e-09, Sum P(2) = 8.0e-09
Identities = 65/278 (23%), Positives = 116/278 (41%)
Query: 257 SDLEDNPLLSGEIGETA-HYG--RSG--HKLINNEISTYSET--PWSLSQKFRPNFFDEL 309
SD EDN + G + A + +G HK ++ ++ PW +K+RPN D++
Sbjct: 2 SDYEDNMDVDGPATKNAVQFSSDNTGAKHKRAAADLPVEAQDNLPWV--EKYRPNTLDDV 59
Query: 310 VGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRE 369
G ++ ++ + + L+ GP GTGKTS I A A ++ + L
Sbjct: 60 SGHKDILATINRFVEANQLPHLLLY-GPPGTGKTST--ILALARRIYGSKNMRQMVLELN 116
Query: 370 CALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWAT 429
S R DV + ++ S+ SA + FK+ I+DE +
Sbjct: 117 A---SDDRGIDVVREQIKTFASTKQIFSMAPSATGKSSLASFKLIILDEADAMTSTAQMA 173
Query: 430 VLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINF 489
+ +E + + F +I KL + LSR ++ F +K+ DI + ++ +E +
Sbjct: 174 LRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIRVLIDQVIEKEDVRI 233
Query: 490 DQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLA 527
A+D + S G +R A +L K + + A
Sbjct: 234 QPEAVDSLVTLSRGDMRRALNVLQACHASSKPLPIKNA 271
Score = 40 (19.1 bits), Expect = 8.0e-09, Sum P(2) = 8.0e-09
Identities = 7/15 (46%), Positives = 13/15 (86%)
Query: 730 LSSLHVNHGLAVAEL 744
L++L +N GLA+A++
Sbjct: 320 LNTLKINKGLALADI 334
>WB|WBGene00004340 [details] [associations]
symbol:rfc-4 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0009378 "four-way
junction helicase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0051301 "cell division" evidence=IMP] [GO:0000910
"cytokinesis" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0045750 "positive regulation of S
phase of mitotic cell cycle" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 Pfam:PF00004 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0040010 GO:GO:0006260
GO:GO:0000003 GO:GO:0000910 GO:GO:0017111 GO:GO:0045750 KO:K10755
eggNOG:COG0470 EMBL:FO080392 HOGENOM:HOG000224154
GeneTree:ENSGT00550000074917 PIR:T16219 RefSeq:NP_498521.1
ProteinModelPortal:P53016 SMR:P53016 DIP:DIP-24293N IntAct:P53016
MINT:MINT-226482 STRING:P53016 PaxDb:P53016 EnsemblMetazoa:F31E3.3
GeneID:175976 KEGG:cel:CELE_F31E3.3 UCSC:F31E3.3 CTD:175976
WormBase:F31E3.3 InParanoid:P53016 OMA:CDLENNL NextBio:890574
Uniprot:P53016
Length = 334
Score = 162 (62.1 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 61/222 (27%), Positives = 97/222 (43%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP D++ Q+ VV L A+ +G LF+GP GTGKTSA+ F C
Sbjct: 18 TEKYRPKTLDDIAYQDEVVTMLKGAL-QGRDLPHLLFYGPPGTGKTSAALAF-----CRQ 71
Query: 358 LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSS---RFKIF 414
L P + + L + + D + + VR ++ S KS+ + KI
Sbjct: 72 LF---PKNIFHDRVLDLN--ASDERGIAVVR----QKIQSFSKSSLGHSHREDVLKLKII 122
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
I+DE + E A + +E+ S+ F++I + +L +SR K+ F +
Sbjct: 123 ILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPAEIQ 182
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLS 516
RLR IC E L + S G +R A L L+
Sbjct: 183 VQRLRTICDAEGTPMSDDELKQVMEYSEGDLRRAVCTLQSLA 224
>UNIPROTKB|P53016 [details] [associations]
symbol:rfc-4 "Replication factor C subunit 4" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0009792
GO:GO:0040010 GO:GO:0006260 GO:GO:0000003 GO:GO:0000910
GO:GO:0017111 GO:GO:0045750 KO:K10755 eggNOG:COG0470 EMBL:FO080392
HOGENOM:HOG000224154 GeneTree:ENSGT00550000074917 PIR:T16219
RefSeq:NP_498521.1 ProteinModelPortal:P53016 SMR:P53016
DIP:DIP-24293N IntAct:P53016 MINT:MINT-226482 STRING:P53016
PaxDb:P53016 EnsemblMetazoa:F31E3.3 GeneID:175976
KEGG:cel:CELE_F31E3.3 UCSC:F31E3.3 CTD:175976 WormBase:F31E3.3
InParanoid:P53016 OMA:CDLENNL NextBio:890574 Uniprot:P53016
Length = 334
Score = 162 (62.1 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 61/222 (27%), Positives = 97/222 (43%)
Query: 298 SQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLS 357
++K+RP D++ Q+ VV L A+ +G LF+GP GTGKTSA+ F C
Sbjct: 18 TEKYRPKTLDDIAYQDEVVTMLKGAL-QGRDLPHLLFYGPPGTGKTSAALAF-----CRQ 71
Query: 358 LEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSS---RFKIF 414
L P + + L + + D + + VR ++ S KS+ + KI
Sbjct: 72 LF---PKNIFHDRVLDLN--ASDERGIAVVR----QKIQSFSKSSLGHSHREDVLKLKII 122
Query: 415 IIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDI 474
I+DE + E A + +E+ S+ F++I + +L +SR K+ F +
Sbjct: 123 ILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPAEIQ 182
Query: 475 ASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLS 516
RLR IC E L + S G +R A L L+
Sbjct: 183 VQRLRTICDAEGTPMSDDELKQVMEYSEGDLRRAVCTLQSLA 224
>POMBASE|SPAC23D3.02 [details] [associations]
symbol:rfc2 "DNA replication factor C complex subunit
Rfc2" species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005663 "DNA replication
factor C complex" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006270 "DNA replication initiation" evidence=IMP] [GO:0031389
"Rad17 RFC-like complex" evidence=TAS] [GO:0031390 "Ctf18 RFC-like
complex" evidence=TAS] [GO:0031391 "Elg1 RFC-like complex"
evidence=IDA] [GO:0033314 "mitotic DNA replication checkpoint"
evidence=IMP] [GO:0043596 "nuclear replication fork" evidence=IC]
[GO:0003689 "DNA clamp loader activity" evidence=TAS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 PomBase:SPAC23D3.02
GO:GO:0005829 GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0003677 GO:GO:0000790 GO:GO:0006270 GO:GO:0043596
GO:GO:0017111 KO:K10755 eggNOG:COG0470 GO:GO:0033314 GO:GO:0031390
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389
Pfam:PF08542 PIR:T38278 RefSeq:NP_594540.1
ProteinModelPortal:Q09843 SMR:Q09843 STRING:Q09843
EnsemblFungi:SPAC23D3.02.1 GeneID:2541908 KEGG:spo:SPAC23D3.02
HOGENOM:HOG000224154 OMA:ICFRGTF OrthoDB:EOG4ZCXDF NextBio:20802995
Uniprot:Q09843
Length = 340
Score = 161 (61.7 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 66/290 (22%), Positives = 120/290 (41%)
Query: 294 PWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAAL 353
PW + +RP D++ Q V+ L + + LF+G GTGKTS I A +
Sbjct: 20 PWV--ELYRPKTLDQVSSQESTVQVLKKTLLSNNLPHM-LFYGSPGTGKTST--ILALSR 74
Query: 354 NCLSLEDQKPCGLCRECALFSSGRSRDVKEV-DSVRINRSDRVGSLMKSAFLPPFSSRFK 412
+ K R L +S R + + + V+ V + + PPF K
Sbjct: 75 ELFGPQLMKS----RVLELNASDE-RGISIIREKVKSFAKTTVTNKVDGYPCPPF----K 125
Query: 413 IFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDG 472
I I+DE + + A + ++E+ ++ F +I + ++ SR KY F + +
Sbjct: 126 IIILDEADSMTQDAQAALRRTMESYARITRFCLICNYMTRIIDPLSSRCSKYRFKPLDNE 185
Query: 473 DIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL--GKKITLSLAYEL 530
++ RL I ++A++ + ++ + S G +R A L + L G IT+S EL
Sbjct: 186 NMVKRLEFIAADQAVSMEPGVVNALVECSGGDMRKAITFLQSAANLHQGTPITISSVEEL 245
Query: 531 IGIVXXXXXXXXXXXXXXXXXXNTVIRARELMRSKIDPMQLISQLANLIM 580
G V N +R++ ++SQL ++++
Sbjct: 246 AGAVPYNIIRSLLDTAYTKNVSNIETLSRDVAAEGYSTGIILSQLHDVLL 295
>FB|FBgn0030871 [details] [associations]
symbol:CG8142 species:7227 "Drosophila melanogaster"
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0031122 "cytoplasmic microtubule organization" evidence=IMP]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005875 GO:GO:0003677
GO:GO:0006260 EMBL:AE014298 GO:GO:0046331 GO:GO:0017111
GO:GO:0031122 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542
GeneTree:ENSGT00550000074917 HSSP:Q8U4J3 EMBL:AY069598
RefSeq:NP_573245.1 UniGene:Dm.2050 SMR:Q9VX15 IntAct:Q9VX15
MINT:MINT-847740 STRING:Q9VX15 EnsemblMetazoa:FBtr0074472
GeneID:32763 KEGG:dme:Dmel_CG8142 UCSC:CG8142-RA
FlyBase:FBgn0030871 InParanoid:Q9VX15 OMA:VGQMMEQ OrthoDB:EOG4Q2BXJ
GenomeRNAi:32763 NextBio:780237 Uniprot:Q9VX15
Length = 353
Score = 160 (61.4 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 63/245 (25%), Positives = 108/245 (44%)
Query: 294 PWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAAL 353
PW +K+RP D++V Q+ VV L + G + + L+ GP GTGKTS I AA+
Sbjct: 31 PWV--EKYRPRNVDDVVEQSEVVAVLRKCVEGGDLPNMLLY-GPPGTGKTST--ILAASR 85
Query: 354 NCLSLEDQKPCGLCRECAL-FSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFK 412
D + ++ L ++ R + V + N S S ++ P FK
Sbjct: 86 QIFG--D-----MFKDRILELNASDERGINVVRTKIKNFSQLSASSVRPDGKP--CPPFK 136
Query: 413 IFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDG 472
I I+DE + + + ++E S+ F +I + ++ SR K+ F + +
Sbjct: 137 IIILDEADSMTHAAQSALRRTMEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALGED 196
Query: 473 DIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQL-SLLGKKITLSLA--YE 529
+ RL+ IC E + + A I S G +R A L L G + ++ A +E
Sbjct: 197 KVIDRLKYICEMEGVKIEDDAYKSIVKISGGDLRRAITTLQSCYRLKGPEHIINTADLFE 256
Query: 530 LIGIV 534
+ G++
Sbjct: 257 MSGVI 261
>SGD|S000003829 [details] [associations]
symbol:RFC2 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0031389 "Rad17 RFC-like
complex" evidence=IDA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0031391 "Elg1 RFC-like complex"
evidence=IPI] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=TAS]
[GO:0006272 "leading strand elongation" evidence=IDA] [GO:0017076
"purine nucleotide binding" evidence=ISS] [GO:0000075 "cell cycle
checkpoint" evidence=IMP] [GO:0005663 "DNA replication factor C
complex" evidence=IDA] [GO:0007062 "sister chromatid cohesion"
evidence=IPI] [GO:0003689 "DNA clamp loader activity" evidence=IDA]
[GO:0031390 "Ctf18 RFC-like complex" evidence=IPI]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 SGD:S000003829
GO:GO:0005524 GO:GO:0005634 EMBL:BK006943 GO:GO:0003677
GO:GO:0006298 EMBL:L47993 GO:GO:0017111 GO:GO:0017076 KO:K06883
RefSeq:NP_012602.3 GeneID:853531 KEGG:sce:YJR068W KO:K10755
eggNOG:COG0470 GO:GO:0000075 GO:GO:0031390 GO:GO:0007062
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
RefSeq:NP_012606.3 GeneID:853535 KEGG:sce:YJR072C PDB:1SXJ
PDBsum:1SXJ GO:GO:0031389 Pfam:PF08542 HOGENOM:HOG000224154
OrthoDB:EOG4ZCXDF EMBL:D28499 EMBL:U26028 EMBL:Z49568 EMBL:AY557920
PIR:S45531 ProteinModelPortal:P40348 SMR:P40348 DIP:DIP-2528N
IntAct:P40348 MINT:MINT-480404 STRING:P40348 PaxDb:P40348
PeptideAtlas:P40348 EnsemblFungi:YJR068W CYGD:YJR068w
GeneTree:ENSGT00550000074917 OMA:SMTADAQ EvolutionaryTrace:P40348
NextBio:974230 Genevestigator:P40348 GermOnline:YJR068W
Uniprot:P40348
Length = 353
Score = 158 (60.7 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 64/250 (25%), Positives = 103/250 (41%)
Query: 291 SETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFA 350
++ PW +K+RP DE+ Q+ V L + + LF+GP GTGKTS
Sbjct: 23 AQQPWV--EKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHM-LFYGPPGTGKTSTILALT 79
Query: 351 AALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSR 410
L L + L S VK + +++ + +++ PP+
Sbjct: 80 KELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHD--LENYPCPPY--- 134
Query: 411 FKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIK 470
KI I+DE + + + + ++E S F +I + ++ SR K+ F +
Sbjct: 135 -KIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALD 193
Query: 471 DGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLS----LLG--KKITL 524
+ RLR I +E + D L+ I S G +R LL S LG K IT
Sbjct: 194 ASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITS 253
Query: 525 SLAYELIGIV 534
+ EL G+V
Sbjct: 254 TQVEELAGVV 263
>GENEDB_PFALCIPARUM|PF14_0601 [details] [associations]
symbol:PF14_0601 "replication factor C3"
species:5833 "Plasmodium falciparum" [GO:0005663 "DNA replication
factor C complex" evidence=ISS] [GO:0043626 "PCNA complex"
evidence=ISS] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 EMBL:AE014187 KO:K10756 GO:GO:0017111
GO:GO:0006271 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0043626
Pfam:PF08542 HOGENOM:HOG000224152 HSSP:Q8U4J3 RefSeq:XP_001348775.1
ProteinModelPortal:Q8IKK4 EnsemblProtists:PF14_0601:mRNA
GeneID:812183 KEGG:pfa:PF14_0601 EuPathDB:PlasmoDB:PF3D7_1463200
OMA:ERIFITR ProtClustDB:CLSZ2432150 Uniprot:Q8IKK4
Length = 344
Score = 155 (59.6 bits), Expect = 8.5e-08, P = 8.5e-08
Identities = 52/234 (22%), Positives = 103/234 (44%)
Query: 293 TPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAA 352
TPW +K+RPN ++++ V+ ++ + +G + L HGP GTGKTS I A
Sbjct: 13 TPWV--EKYRPNVLNDIISHEQVISTIKRFVQKGELPHL-LLHGPPGTGKTST--ILAV- 66
Query: 353 LNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSA--FLPPFSSR 410
C L K E + D + ++ +R D++ + +S + +
Sbjct: 67 --CKELYGDKRSSFVLEL------NASDDRGINVIR----DQIKTFAESKNHYTTCEKTT 114
Query: 411 FKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIK 470
K+ I+DE + + +EN +++V F ++ ++K+ + SR + F +K
Sbjct: 115 LKLIILDEADHMTYPAQNAMRRIMENYAKNVRFCLLCNYVNKITPAIQSRCTAFRFAPLK 174
Query: 471 DGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITL 524
+ ++ I E +N + +D + +G +R L +SL K + +
Sbjct: 175 KEYMKNKALDIAKSENVNLTEGGIDSLIRVGHGDMRRILNCLQVVSLSHKNLVI 228
>UNIPROTKB|Q8IKK4 [details] [associations]
symbol:PF14_0601 "Replication factor C3" species:36329
"Plasmodium falciparum 3D7" [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0006271 "DNA strand elongation involved
in DNA replication" evidence=ISS] [GO:0043626 "PCNA complex"
evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 EMBL:AE014187 KO:K10756 GO:GO:0017111
GO:GO:0006271 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0043626
Pfam:PF08542 HOGENOM:HOG000224152 HSSP:Q8U4J3 RefSeq:XP_001348775.1
ProteinModelPortal:Q8IKK4 EnsemblProtists:PF14_0601:mRNA
GeneID:812183 KEGG:pfa:PF14_0601 EuPathDB:PlasmoDB:PF3D7_1463200
OMA:ERIFITR ProtClustDB:CLSZ2432150 Uniprot:Q8IKK4
Length = 344
Score = 155 (59.6 bits), Expect = 8.5e-08, P = 8.5e-08
Identities = 52/234 (22%), Positives = 103/234 (44%)
Query: 293 TPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAA 352
TPW +K+RPN ++++ V+ ++ + +G + L HGP GTGKTS I A
Sbjct: 13 TPWV--EKYRPNVLNDIISHEQVISTIKRFVQKGELPHL-LLHGPPGTGKTST--ILAV- 66
Query: 353 LNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSA--FLPPFSSR 410
C L K E + D + ++ +R D++ + +S + +
Sbjct: 67 --CKELYGDKRSSFVLEL------NASDDRGINVIR----DQIKTFAESKNHYTTCEKTT 114
Query: 411 FKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIK 470
K+ I+DE + + +EN +++V F ++ ++K+ + SR + F +K
Sbjct: 115 LKLIILDEADHMTYPAQNAMRRIMENYAKNVRFCLLCNYVNKITPAIQSRCTAFRFAPLK 174
Query: 471 DGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITL 524
+ ++ I E +N + +D + +G +R L +SL K + +
Sbjct: 175 KEYMKNKALDIAKSENVNLTEGGIDSLIRVGHGDMRRILNCLQVVSLSHKNLVI 228
>SGD|S000005234 [details] [associations]
symbol:RFC3 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0003689 "DNA
clamp loader activity" evidence=IDA] [GO:0031389 "Rad17 RFC-like
complex" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0031390 "Ctf18 RFC-like complex"
evidence=IPI] [GO:0031391 "Elg1 RFC-like complex" evidence=IPI]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0005663 "DNA
replication factor C complex" evidence=IDA] [GO:0006272 "leading
strand elongation" evidence=IDA] [GO:0006298 "mismatch repair"
evidence=TAS] [GO:0007062 "sister chromatid cohesion" evidence=IPI]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 SGD:S000005234
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 EMBL:BK006947
GO:GO:0016887 GO:GO:0006298 KO:K10756 eggNOG:COG0470 EMBL:U23084
GO:GO:0031390 GO:GO:0007062 GO:GO:0006272 SUPFAM:SSF48019
GO:GO:0005663 GO:GO:0031391 EMBL:Z71566 PDB:1SXJ PDBsum:1SXJ
GO:GO:0031389 Pfam:PF08542 HOGENOM:HOG000224152 OrthoDB:EOG4K0TX8
EMBL:L18755 EMBL:U26029 PIR:A36988 RefSeq:NP_014109.1
ProteinModelPortal:P38629 SMR:P38629 DIP:DIP-2529N IntAct:P38629
MINT:MINT-540713 STRING:P38629 PaxDb:P38629 PeptideAtlas:P38629
EnsemblFungi:YNL290W GeneID:855426 KEGG:sce:YNL290W CYGD:YNL290w
GeneTree:ENSGT00550000075072 OMA:YAHKLTP EvolutionaryTrace:P38629
NextBio:979295 Genevestigator:P38629 GermOnline:YNL290W
Uniprot:P38629
Length = 340
Score = 107 (42.7 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 22/51 (43%), Positives = 31/51 (60%)
Query: 294 PWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTS 344
PW +K+RP DE+ GQN V+ ++ + G + LF+GP GTGKTS
Sbjct: 14 PWV--EKYRPETLDEVYGQNEVITTVRKFVDEGKLPHL-LFYGPPGTGKTS 61
Score = 95 (38.5 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 24/100 (24%), Positives = 43/100 (43%)
Query: 407 FSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHF 466
FS FK+ I+DE + + +E +++ F ++ KL + LSR ++ F
Sbjct: 107 FSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRF 166
Query: 467 PKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIR 506
+ I R+ + V E + A + SNG +R
Sbjct: 167 QPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMR 206
>RGD|1309280 [details] [associations]
symbol:Rfc5 "replication factor C (activator 1) 5" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005663 "DNA replication factor C complex" evidence=IEA;ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 RGD:1309280
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 GO:GO:0005663 Pfam:PF08542
GeneTree:ENSGT00550000075072 OMA:ILACARQ IPI:IPI00870052
Ensembl:ENSRNOT00000001498 UCSC:RGD:1309280 ArrayExpress:F1LQL0
Uniprot:F1LQL0
Length = 339
Score = 122 (48.0 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 48/201 (23%), Positives = 84/201 (41%)
Query: 333 LFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRS 392
L +GP GTGKTS I A A L K G ++ + D + +D VR
Sbjct: 56 LLYGPPGTGKTST--ILACAKQ---LYKDKEFG-----SMVLELNASDDRGIDIVR---- 101
Query: 393 DRVGSLMKSAFLPPFSSR-FKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELD 451
G ++ A R FK+ I+DE + + + +E +++ F +I L
Sbjct: 102 ---GPILSFASTRTIFKRGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLS 158
Query: 452 KLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEML 511
K+ + SR ++ F + + RL + EE ++ + + + S+G +R A +
Sbjct: 159 KIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENVDISEDGMKALVTLSSGDMRRALNI 218
Query: 512 LDQLSLLGKKITLSLAYELIG 532
L ++ K+T Y G
Sbjct: 219 LQSTNMAFGKVTEETVYTCTG 239
Score = 76 (31.8 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 294 PWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAA 352
PW +K+RP +L+ ++ ++ IS + L+ GP GTGKTS I A A
Sbjct: 20 PWV--EKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLY-GPPGTGKTST--ILACA 73
>UNIPROTKB|O06363 [details] [associations]
symbol:Rv3644c "Possible DNA polymerase" species:1773
"Mycobacterium tuberculosis" [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR003593 InterPro:IPR004622 SMART:SM00382 GO:GO:0005829
GenomeReviews:AL123456_GR GO:GO:0000166 EMBL:BX842583 GO:GO:0006260
GO:GO:0017111 GO:GO:0008408 GO:GO:0003887 KO:K02341
TIGRFAMs:TIGR00678 EMBL:AL123456 PIR:E70563 RefSeq:NP_218161.1
RefSeq:YP_006517131.1 HSSP:P28631 ProteinModelPortal:O06363
SMR:O06363 PRIDE:O06363 EnsemblBacteria:EBMYCT00000000905
GeneID:13317252 GeneID:885553 KEGG:mtu:Rv3644c KEGG:mtv:RVBD_3644c
PATRIC:18156710 TubercuList:Rv3644c HOGENOM:HOG000192594
OMA:AFKLRRI ProtClustDB:PRK07940 Uniprot:O06363
Length = 401
Score = 152 (58.6 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 57/220 (25%), Positives = 96/220 (43%)
Query: 306 FDELVGQNVVVRSLL------------SAISRGMVTSFYLFHGPRGTGKTSASRIFAAAL 353
F LVGQ V LL SA G +T +L GP G+G++ A+ FAAAL
Sbjct: 5 FTRLVGQQAVEAELLATAKAARRDSAHSAGGGGTMTHAWLLTGPPGSGRSVAALCFAAAL 64
Query: 354 NCLSLEDQKPCGLCRECALFSSGRSRDVKEV--DSVRINRSDRVGSLMKSAFLPPFSSRF 411
C S + CG CR C +G DV+ V + + I D + ++++ A P + +
Sbjct: 65 QCTS-GGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIG-VDEMRAIVQIAARRPTTGHW 122
Query: 412 KIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKD 471
+I +I++ L +L +E VF++ P +D + RS+ H +
Sbjct: 123 QIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVALVTP 182
Query: 472 GDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEML 511
A + ++ + + D ++ A+ S G + A L
Sbjct: 183 STHA--IAQV-LSDGDGLDPDTANWAASVSGGHVGRARRL 219
>UNIPROTKB|Q9KQI3 [details] [associations]
symbol:VC_2015 "DNA polymerase III, delta prime subunit"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0009360 "DNA
polymerase III complex" evidence=ISS] InterPro:IPR004622
InterPro:IPR008921 InterPro:IPR015199 Pfam:PF09115 GO:GO:0003677
GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0008408
GO:GO:0003887 GO:GO:0009360 SUPFAM:SSF48019 KO:K02341
TIGRFAMs:TIGR00678 HSSP:P28631 PIR:H82127 RefSeq:NP_231649.1
ProteinModelPortal:Q9KQI3 DNASU:2613394 GeneID:2613394
KEGG:vch:VC2015 PATRIC:20083062 OMA:AMNESAS ProtClustDB:PRK06090
Uniprot:Q9KQI3
Length = 324
Score = 149 (57.5 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 36/150 (24%), Positives = 70/150 (46%)
Query: 321 SAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRD 380
+ ++ G ++S L G G S + A L C S + + PCG C C L SG D
Sbjct: 20 AGLAAGKISSATLIQASEGVGVESLVELMARTLMCTSSQSE-PCGFCHSCGLMQSGNHPD 78
Query: 381 VKEVDSVRINRSDRVGSLMKSAFLPPFSSR---FKIFIIDECQLLHGETWATVLNSLENI 437
V +I +S V + + + SS+ +++ +I+ ++ + +L +LE
Sbjct: 79 FHVVKPEKIGKSITVEQIRQMNRIAQESSQLSGYRLIVIEPADAMNESSANALLKTLEEP 138
Query: 438 SQHVVFVMITPELDKLPRSALSRSQKYHFP 467
+ + +F+++T + L + +SR Q+ P
Sbjct: 139 APNCLFILVTSRIKHLLPTIVSRCQRLVLP 168
>TIGR_CMR|VC_2015 [details] [associations]
symbol:VC_2015 "DNA polymerase III, delta prime subunit"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR004622 InterPro:IPR008921
InterPro:IPR015199 Pfam:PF09115 GO:GO:0003677 GO:GO:0006260
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0008408 GO:GO:0003887
GO:GO:0009360 SUPFAM:SSF48019 KO:K02341 TIGRFAMs:TIGR00678
HSSP:P28631 PIR:H82127 RefSeq:NP_231649.1 ProteinModelPortal:Q9KQI3
DNASU:2613394 GeneID:2613394 KEGG:vch:VC2015 PATRIC:20083062
OMA:AMNESAS ProtClustDB:PRK06090 Uniprot:Q9KQI3
Length = 324
Score = 149 (57.5 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 36/150 (24%), Positives = 70/150 (46%)
Query: 321 SAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRD 380
+ ++ G ++S L G G S + A L C S + + PCG C C L SG D
Sbjct: 20 AGLAAGKISSATLIQASEGVGVESLVELMARTLMCTSSQSE-PCGFCHSCGLMQSGNHPD 78
Query: 381 VKEVDSVRINRSDRVGSLMKSAFLPPFSSR---FKIFIIDECQLLHGETWATVLNSLENI 437
V +I +S V + + + SS+ +++ +I+ ++ + +L +LE
Sbjct: 79 FHVVKPEKIGKSITVEQIRQMNRIAQESSQLSGYRLIVIEPADAMNESSANALLKTLEEP 138
Query: 438 SQHVVFVMITPELDKLPRSALSRSQKYHFP 467
+ + +F+++T + L + +SR Q+ P
Sbjct: 139 APNCLFILVTSRIKHLLPTIVSRCQRLVLP 168
>ASPGD|ASPL0000039105 [details] [associations]
symbol:AN2969 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0033314 "mitotic DNA
replication checkpoint" evidence=IEA] [GO:0006272 "leading strand
elongation" evidence=IEA] [GO:0007062 "sister chromatid cohesion"
evidence=IEA] [GO:0006270 "DNA replication initiation"
evidence=IEA] [GO:0003689 "DNA clamp loader activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0031390 "Ctf18 RFC-like
complex" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0031391 "Elg1 RFC-like complex" evidence=IEA] [GO:0031389
"Rad17 RFC-like complex" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
EMBL:BN001306 GO:GO:0017111 SUPFAM:SSF48019 Pfam:PF08542
OMA:QQLSQNC EnsemblFungi:CADANIAT00010111 Uniprot:C8VJ05
Length = 387
Score = 150 (57.9 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 57/236 (24%), Positives = 102/236 (43%)
Query: 294 PWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTS-----ASRI 348
PW +K+RP D++ Q+ + L + + LF+GP GTGKTS A +
Sbjct: 35 PWV--EKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHM-LFYGPPGTGKTSTILALAKSL 91
Query: 349 FAAAL---NCLSLE--DQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAF 403
F AL L L D++ G+ RE VK V+++ + + +
Sbjct: 92 FGPALYRSRILELNASDERGIGIVRE----------KVKGFARVQLSHPTGLDAEYFEKY 141
Query: 404 -LPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQ 462
PPF KI I+DE + + + + ++E S+ F ++ + ++ SR
Sbjct: 142 PCPPF----KIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCS 197
Query: 463 KYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLL 518
K+ F + + RL +I E ++ + +D + + S+G +R A L + L
Sbjct: 198 KFRFKPLDNSAAGDRLAQIAQLEKLSLENGVVDKLISCSDGDLRRAITYLQSAARL 253
>CGD|CAL0002015 [details] [associations]
symbol:RFC2 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IEA] [GO:0031390 "Ctf18 RFC-like complex"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0031391 "Elg1
RFC-like complex" evidence=IEA] [GO:0031389 "Rad17 RFC-like
complex" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=IEA] [GO:0033314 "mitotic DNA replication checkpoint"
evidence=IEA] [GO:0006272 "leading strand elongation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0006270
"DNA replication initiation" evidence=IEA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 CGD:CAL0002015
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
EMBL:AACQ01000024 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224154 RefSeq:XP_720328.1
RefSeq:XP_888712.1 ProteinModelPortal:Q5AFN3 SMR:Q5AFN3
STRING:Q5AFN3 GeneID:3637939 GeneID:3703993 KEGG:cal:CaO19.7035
KEGG:cal:CaO19_7035 Uniprot:Q5AFN3
Length = 363
Score = 146 (56.5 bits), Expect = 9.7e-07, P = 9.7e-07
Identities = 58/246 (23%), Positives = 103/246 (41%)
Query: 293 TPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAA 352
TPW +K+RP +++ Q ++ L I G + LF+GP GTGKTS A
Sbjct: 24 TPWV--EKYRPKSLNDVSSQEHTIKVLTQTIKSGNLPHM-LFYGPPGTGKTSTILALAKE 80
Query: 353 LNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFK 412
L +L + L S +K R+ S+ +++ PP+ K
Sbjct: 81 LYGPNLYKSRVLELNASDERGISIVREKIKNF--ARLTISNPTKEDLQNYPCPPY----K 134
Query: 413 IFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDG 472
I I+DE + + + + ++EN + FV+I + ++ SR K+ F + +
Sbjct: 135 IIILDEADSMTNDAQSALRRTMENYAGITRFVLICNYITRIIDPITSRCSKFRFKLLNNE 194
Query: 473 DIASRLRRICVEEAINFDQA-----ALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSLA 527
+ RL+ I +E + F+ + + S G +R A L + L + ++
Sbjct: 195 NAQLRLKYIGQQENLRFESENNEHQVIQELLKISGGDLRKAITYLQSAAKLSETFDINHH 254
Query: 528 YELIGI 533
LI I
Sbjct: 255 QSLITI 260
>TIGR_CMR|BA_0028 [details] [associations]
symbol:BA_0028 "DNA polymerase III, delta prime subunit"
species:198094 "Bacillus anthracis str. Ames" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR004622 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006260
GO:GO:0008408 GO:GO:0003887 KO:K02341 TIGRFAMs:TIGR00678
HOGENOM:HOG000192593 RefSeq:NP_842598.1 RefSeq:YP_016633.2
RefSeq:YP_026317.1 ProteinModelPortal:Q81W10 DNASU:1085794
EnsemblBacteria:EBBACT00000013310 EnsemblBacteria:EBBACT00000013749
EnsemblBacteria:EBBACT00000019869 GeneID:1085794 GeneID:2816307
GeneID:2852708 KEGG:ban:BA_0028 KEGG:bar:GBAA_0028 KEGG:bat:BAS0030
OMA:RIESGNH ProtClustDB:PRK08058 BioCyc:BANT260799:GJAJ-37-MONOMER
BioCyc:BANT261594:GJ7F-38-MONOMER Uniprot:Q81W10
Length = 327
Score = 145 (56.1 bits), Expect = 9.7e-07, P = 9.7e-07
Identities = 49/222 (22%), Positives = 96/222 (43%)
Query: 312 QNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECA 371
Q + V+ L+++I++ ++ YL G +GTGK + + A + C +PC +C C
Sbjct: 12 QPIGVKMLMNSIAKERISHAYLLEGEKGTGKFATAIQMAKSFLCSQRNRVEPCHVCTNCK 71
Query: 372 LFSSGRSRDVKEV--DSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWAT 429
SG ++ V D + I + ++ L + + K++II+ +
Sbjct: 72 RIDSGNHPNLHIVKPDGLSIKKQ-QIHDLQEEFSKTGLEANKKVYIIEHADRMTANAANA 130
Query: 430 VLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINF 489
+L LE S +++T + ++ + LSR Q F + + RL+ +E I
Sbjct: 131 LLKFLEEPSSDTTAILLTEQSHQILNTILSRCQVVTFRPLPTESLIRRLQ----DEGIT- 185
Query: 490 DQAALDFIAAKSNGSIRDAEMLL-DQLSLLGKKITLSLAYEL 530
+L +AA+ S +A L D+ + + + L L
Sbjct: 186 --VSLSTLAAQLTNSFDEALTLCNDEWFAQARALVIKLCEAL 225
>POMBASE|SPAC27E2.10c [details] [associations]
symbol:rfc3 "DNA replication factor C complex subunit
Rfc3" species:4896 "Schizosaccharomyces pombe" [GO:0000077 "DNA
damage checkpoint" evidence=IMP] [GO:0000790 "nuclear chromatin"
evidence=IC] [GO:0005524 "ATP binding" evidence=ISM] [GO:0005634
"nucleus" evidence=IC;IDA] [GO:0005663 "DNA replication factor C
complex" evidence=TAS] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IC]
[GO:0031389 "Rad17 RFC-like complex" evidence=TAS] [GO:0031390
"Ctf18 RFC-like complex" evidence=TAS] [GO:0031391 "Elg1 RFC-like
complex" evidence=IDA] [GO:0043596 "nuclear replication fork"
evidence=IC] [GO:0065007 "biological regulation" evidence=NAS]
[GO:0003689 "DNA clamp loader activity" evidence=TAS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 PomBase:SPAC27E2.10c
GO:GO:0005829 GO:GO:0005524 GO:GO:0000077 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0006261 GO:GO:0000790
GO:GO:0043596 KO:K10756 GO:GO:0017111 eggNOG:COG0470 GO:GO:0031390
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389
Pfam:PF08542 EMBL:AB017039 EMBL:AB017040 EMBL:AJ012839 PIR:T43410
RefSeq:XP_001713099.1 ProteinModelPortal:O14003 SMR:O14003
STRING:O14003 EnsemblFungi:SPAC27E2.10c.1 GeneID:2541493
KEGG:spo:SPAC27E2.10c HOGENOM:HOG000224152 OMA:VIAFHER
OrthoDB:EOG4K0TX8 NextBio:20802592 Uniprot:O14003
Length = 342
Score = 101 (40.6 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 29/126 (23%), Positives = 54/126 (42%)
Query: 407 FSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHF 466
F+S FK+ I+DE + + +E +++V F +I ++K+ + SR ++ F
Sbjct: 117 FASTFKMIILDEADAMTLAAQNALRRVIEKYTKNVRFCIICNYINKISPAIQSRCTRFRF 176
Query: 467 PKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKITLSL 526
+ +I + + E N D A + S G +R A +L I +S
Sbjct: 177 QPLPPKEIEKTVDHVIQSEHCNIDPDAKMAVLRLSKGDMRKALNILQACHAAYDHIDVSA 236
Query: 527 AYELIG 532
Y +G
Sbjct: 237 IYNCVG 242
Score = 91 (37.1 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 25/70 (35%), Positives = 37/70 (52%)
Query: 283 INNEISTYSETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGK 342
I+ + + S PW +K+RP +++V ++ +L IS V LF+GP GTGK
Sbjct: 13 IDLPLGSESTLPWV--EKYRPANLEDVVSHKDIISTLEKFISSNRVPHM-LFYGPPGTGK 69
Query: 343 TSASRIFAAA 352
TS I A A
Sbjct: 70 TST--ILACA 77
>POMBASE|SPAC1687.03c [details] [associations]
symbol:rfc4 "DNA replication factor C complex subunit
Rfc4 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000790 "nuclear chromatin" evidence=IC] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006272 "leading strand
elongation" evidence=ISO] [GO:0031389 "Rad17 RFC-like complex"
evidence=TAS] [GO:0031390 "Ctf18 RFC-like complex" evidence=TAS]
[GO:0031391 "Elg1 RFC-like complex" evidence=IDA] [GO:0043596
"nuclear replication fork" evidence=IC] [GO:0003689 "DNA clamp
loader activity" evidence=TAS] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748
PomBase:SPAC1687.03c GO:GO:0005829 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0007049 GO:GO:0000790
GO:GO:0043596 GO:GO:0017111 KO:K10755 eggNOG:COG0470 GO:GO:0031390
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
GO:GO:0031389 HOGENOM:HOG000224155 Pfam:PF08542 PIR:T37746
RefSeq:NP_593121.1 ProteinModelPortal:O94449 SMR:O94449
STRING:O94449 EnsemblFungi:SPAC1687.03c.1 GeneID:2542790
KEGG:spo:SPAC1687.03c OMA:GTYELPW OrthoDB:EOG4PP1RM
NextBio:20803834 Uniprot:O94449
Length = 342
Score = 108 (43.1 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 33/129 (25%), Positives = 53/129 (41%)
Query: 380 DVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQ 439
D + +D VR NR K LPP R KI I+DE + + ++E S
Sbjct: 94 DERGIDVVR-NRIKAFAQ--KKVILPP--GRHKIIILDEADSMTAGAQQALRRTMEIYSN 148
Query: 440 HVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAA 499
F + + +K+ SR + ++ D + RL IC E +N+ L +
Sbjct: 149 TTRFALACNQSNKIIEPIQSRCAILRYSRLTDQQVLQRLLNICKAEKVNYTDDGLAALIM 208
Query: 500 KSNGSIRDA 508
+ G +R A
Sbjct: 209 TAEGDMRQA 217
Score = 72 (30.4 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 22/70 (31%), Positives = 33/70 (47%)
Query: 284 NNEISTYSETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKT 343
NN ++ Y E PW +K+RP D++VG + L G + + G G GKT
Sbjct: 14 NNSVA-Y-ELPWV--EKYRPIVLDDIVGNEETIDRLKVIAKEGNMPHLVI-SGMPGIGKT 68
Query: 344 SASRIFAAAL 353
++ A AL
Sbjct: 69 TSILCLAHAL 78
>DICTYBASE|DDB_G0282235 [details] [associations]
symbol:rfc5 "replication factor C subunit 5"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=ISS] [GO:0031391 "Elg1 RFC-like complex" evidence=ISS]
[GO:0031389 "Rad17 RFC-like complex" evidence=ISS] [GO:0016887
"ATPase activity" evidence=ISS] [GO:0006298 "mismatch repair"
evidence=ISS] [GO:0006272 "leading strand elongation" evidence=ISS]
[GO:0006200 "ATP catabolic process" evidence=ISS] [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
dictyBase:DDB_G0282235 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0003677 GO:GO:0016887 GO:GO:0006298
KO:K10756 EMBL:AAFI02000046 eggNOG:COG0470 GO:GO:0006272
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389
Pfam:PF08542 RefSeq:XP_640301.1 HSSP:P38629
ProteinModelPortal:Q54ST4 STRING:Q54ST4 EnsemblProtists:DDB0232229
GeneID:8623477 KEGG:ddi:DDB_G0282235 OMA:ILACARQ Uniprot:Q54ST4
Length = 347
Score = 132 (51.5 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 49/236 (20%), Positives = 97/236 (41%)
Query: 299 QKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSL 358
+K+RP D+L+ + +++ I + LF+GP GTGKTS + A L
Sbjct: 28 EKYRPKNLDDLIAHEDITQTITKLIDNNTLPHL-LFYGPPGTGKTSTIQAIAR-----KL 81
Query: 359 EDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDE 418
+ E + D + +D VR +++ + S F + +K+ I+DE
Sbjct: 82 YGDNYSRMVLEL------NASDDRGIDVVR----EQIKTFASSMFFFNTTVPYKLIILDE 131
Query: 419 CQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRL 478
+ + +E ++ F ++ + K+ + SR ++ F + RL
Sbjct: 132 ADSMTNIAQTALRRVIEKYTKTTRFCIVCNYVIKIIPALQSRCTRFRFSPLPTPPTEIRL 191
Query: 479 RRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSL--LGKKITLSLAYELIG 532
+ I +E + D A++ + G +R +L +S+ + IT Y+ G
Sbjct: 192 KEIIEKENVKVDSKAMNAVLELGCGDMRKCLNILQSVSMSSIDNNITEEAIYKCTG 247
>UNIPROTKB|C9J8M3 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0017111 EMBL:AC112907 HOGENOM:HOG000224154
HGNC:HGNC:9972 ChiTaRS:RFC4 OrthoDB:EOG4Q58PN IPI:IPI00792595
ProteinModelPortal:C9J8M3 SMR:C9J8M3 STRING:C9J8M3
Ensembl:ENST00000418288 ArrayExpress:C9J8M3 Bgee:C9J8M3
Uniprot:C9J8M3
Length = 214
Score = 126 (49.4 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 53/181 (29%), Positives = 79/181 (43%)
Query: 294 PWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAAL 353
PW +K+RP DE+ Q VV L ++ + + LF+GP GTGKTS I AAA
Sbjct: 39 PWV--EKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNL-LFYGPPGTGKTST--ILAAAR 93
Query: 354 NCLSLEDQKPCGLCRECAL-FSSGRSRDVKEV-DSVRINRSDRV-GSLMKSAFLPPFSSR 410
E L R L ++ R ++ V + V+ V GS PPF
Sbjct: 94 ELFGPE------LFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPF--- 144
Query: 411 FKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIK 470
KI I+DE + A + ++E S+ F +I + ++ SR K+ F +
Sbjct: 145 -KIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLS 203
Query: 471 D 471
D
Sbjct: 204 D 204
>TIGR_CMR|GSU_2230 [details] [associations]
symbol:GSU_2230 "DNA polymerase III, delta prime subunit"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR004622 GO:GO:0006260
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0008408 GO:GO:0003887
KO:K02341 TIGRFAMs:TIGR00678 HSSP:P28631 HOGENOM:HOG000192593
OMA:AFIKIDQ RefSeq:NP_953279.1 ProteinModelPortal:Q74AW9
GeneID:2687562 KEGG:gsu:GSU2230 PATRIC:22027315
ProtClustDB:CLSK828770 BioCyc:GSUL243231:GH27-2186-MONOMER
Uniprot:Q74AW9
Length = 323
Score = 129 (50.5 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 41/167 (24%), Positives = 68/167 (40%)
Query: 306 FDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEDQKPCG 365
F ++GQ V L A+ G YLF G G GK + + F A C +D CG
Sbjct: 3 FSRVLGQETAVNVLQRALRSGKTAHAYLFEGIEGCGKMTTALAFIEAAFCRR-DDG--CG 59
Query: 366 LCRECALFSSGRSRDVKEV-DSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDECQLLHG 424
C C + + D+ + + D+V L + L P + K IID+ L+
Sbjct: 60 SCPSCRKMAGLQHPDLHRLAPEGAFIKIDQVRELQRELSLRPVEAPMKACIIDDADRLNP 119
Query: 425 ETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKD 471
+L +LE + + +++T + + SR Q F + +
Sbjct: 120 AAANALLKTLEEPPGNALLILLTTNPAGILPTVRSRCQLLRFSPLPE 166
>WB|WBGene00004338 [details] [associations]
symbol:rfc-2 species:6239 "Caenorhabditis elegans"
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0009378 "four-way
junction helicase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0009792 GO:GO:0003677 GO:GO:0006260
GO:GO:0040011 GO:GO:0000003 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 GeneTree:ENSGT00550000075050 HOGENOM:HOG000224155
OMA:IQCLARI Pfam:PF08542 EMBL:FO080408 PIR:D88638
RefSeq:NP_500069.1 HSSP:Q8U4J3 ProteinModelPortal:O44175 SMR:O44175
DIP:DIP-26649N IntAct:O44175 MINT:MINT-1044481 STRING:O44175
PaxDb:O44175 EnsemblMetazoa:F58F6.4 GeneID:176946
KEGG:cel:CELE_F58F6.4 UCSC:F58F6.4 CTD:176946 WormBase:F58F6.4
InParanoid:O44175 NextBio:894694 Uniprot:O44175
Length = 334
Score = 104 (41.7 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
Identities = 39/173 (22%), Positives = 76/173 (43%)
Query: 336 GPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRV 395
GP G GKT++ ++A A L D+ +E L + + D + +D VR R+
Sbjct: 50 GPPGCGKTTS--VWALARELLG--DK-----VKEAVLELN--ASDERGIDVVR----HRI 94
Query: 396 GSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPR 455
+ ++ P R KI I+DE + + ++E ++ F + + +K+
Sbjct: 95 KTFAQTKVTLP-EGRHKIIILDEADSMTDGAQQALRRTMEMYTKTTRFALACNQSEKIIE 153
Query: 456 SALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDA 508
SR + K+ + +R++ + E +N+D L+ I + G +R A
Sbjct: 154 PIQSRCALLRYTKLSPVQLLTRVKEVAKAEKVNYDDGGLEAILFTAQGDMRQA 206
Score = 71 (30.1 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
Identities = 21/63 (33%), Positives = 31/63 (49%)
Query: 294 PWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAAL 353
PW +K+RP ++VG +V L G V + L GP G GKT++ ++A A
Sbjct: 11 PWV--EKYRPKVLADIVGNENIVERLKVIGHEGNVPNIVL-SGPPGCGKTTS--VWALAR 65
Query: 354 NCL 356
L
Sbjct: 66 ELL 68
>TAIR|locus:2204710 [details] [associations]
symbol:RFC3 "replication factor C subunit 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0005663 "DNA replication factor C complex" evidence=ISS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0031348 "negative regulation of defense
response" evidence=IMP] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0006312 "mitotic recombination"
evidence=RCA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=RCA] [GO:0009560 "embryo sac egg cell
differentiation" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0016246 "RNA interference"
evidence=RCA] [GO:0016570 "histone modification" evidence=RCA]
[GO:0031048 "chromatin silencing by small RNA" evidence=RCA]
[GO:0048449 "floral organ formation" evidence=RCA] [GO:0051567
"histone H3-K9 methylation" evidence=RCA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005524 GO:GO:0031348 GO:GO:0003677 GO:GO:0006260 KO:K10756
GO:GO:0017111 EMBL:AC010704 eggNOG:COG0470 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224152 OMA:ILACARQ HSSP:Q8U4J3
EMBL:AY065452 EMBL:AY117282 IPI:IPI00521569 PIR:A96804
RefSeq:NP_177871.1 UniGene:At.28476 UniGene:At.70634
ProteinModelPortal:Q9CAQ8 SMR:Q9CAQ8 STRING:Q9CAQ8 PaxDb:Q9CAQ8
PRIDE:Q9CAQ8 EnsemblPlants:AT1G77470.1 GeneID:844083
KEGG:ath:AT1G77470 TAIR:At1g77470 InParanoid:Q9CAQ8
PhylomeDB:Q9CAQ8 ProtClustDB:CLSN2682996 ArrayExpress:Q9CAQ8
Genevestigator:Q9CAQ8 Uniprot:Q9CAQ8
Length = 369
Score = 125 (49.1 bits), Expect = 0.00020, P = 0.00020
Identities = 50/225 (22%), Positives = 94/225 (41%)
Query: 299 QKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAALNCLSL 358
+K+RP D++ ++ ++ + + L+ GP GTGKTS I A A L
Sbjct: 43 EKYRPQSLDDVAAHRDIIDTIDRLTNENKLPHLLLY-GPPGTGKTST--ILAVARK---L 96
Query: 359 EDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRVGSLMKSAFLPPFSSRFKIFIIDE 418
K + E + D + +D VR D + +S L S K+ ++DE
Sbjct: 97 YGPKYRNMILEL------NASDDRGIDVVRQQIQDFAST--QSFSLG--KSSVKLVLLDE 146
Query: 419 CQLLHGETWATVLNSLENISQHVVFVMITPELDKLPRSALSRSQKYHFPKIKDGDIASRL 478
+ + + +E ++ F +I ++K+ + SR ++ F + ++ RL
Sbjct: 147 ADAMTKDAQFALRRVIEKYTKSTRFALIGNHVNKIIPALQSRCTRFRFAPLDGVHMSQRL 206
Query: 479 RRICVEEAINFDQAALDFIAAKSNGSIRDAEMLLDQLSLLGKKIT 523
+ + E + L + SNG +R A +L + K+IT
Sbjct: 207 KHVIEAERLVVSDCGLAALVRLSNGDMRKALNILQSTHMASKEIT 251
>UNIPROTKB|Q32PI3 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 KO:K10756 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542
HOGENOM:HOG000224152 GeneTree:ENSGT00550000075072 OMA:ILACARQ
CTD:5985 OrthoDB:EOG4RBQJX EMBL:DAAA02045332 EMBL:BC108105
IPI:IPI00688331 RefSeq:NP_001068826.1 UniGene:Bt.21988 SMR:Q32PI3
STRING:Q32PI3 Ensembl:ENSBTAT00000009392 GeneID:508389
KEGG:bta:508389 NextBio:20868499 Uniprot:Q32PI3
Length = 316
Score = 123 (48.4 bits), Expect = 0.00025, P = 0.00025
Identities = 48/201 (23%), Positives = 84/201 (41%)
Query: 333 LFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRS 392
L +GP GTGKTS I A A L K G ++ + D + +D VR
Sbjct: 56 LLYGPPGTGKTST--ILACAKQ---LYKDKEFG-----SMVLELNASDDRGIDIVR---- 101
Query: 393 DRVGSLMKSAFLPP-FSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELD 451
G ++ A F FK+ I+DE + + + +E +++ F +I L
Sbjct: 102 ---GPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLS 158
Query: 452 KLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEML 511
K+ + SR ++ F + + RL + EE ++ + + + S+G +R A +
Sbjct: 159 KIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALITLSSGDMRRALNI 218
Query: 512 LDQLSLLGKKITLSLAYELIG 532
L ++ K+T Y G
Sbjct: 219 LQSTNMAFGKVTEETVYTCTG 239
>UNIPROTKB|J9NUF8 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075072
EMBL:AAEX03014719 Ensembl:ENSCAFT00000046634 Uniprot:J9NUF8
Length = 316
Score = 123 (48.4 bits), Expect = 0.00025, P = 0.00025
Identities = 48/201 (23%), Positives = 84/201 (41%)
Query: 333 LFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRS 392
L +GP GTGKTS I A A L K G ++ + D + +D VR
Sbjct: 56 LLYGPPGTGKTST--ILACAKQ---LYKDKEFG-----SMVLELNASDDRGIDIVR---- 101
Query: 393 DRVGSLMKSAFLPP-FSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELD 451
G ++ A F FK+ I+DE + + + +E +++ F +I L
Sbjct: 102 ---GPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLS 158
Query: 452 KLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEML 511
K+ + SR ++ F + + RL + EE ++ + + + S+G +R A +
Sbjct: 159 KIIPALQSRCTRFRFGPLTPELMVPRLEHVVGEEKVDLSEDGMKALVTLSSGDMRRALNI 218
Query: 512 LDQLSLLGKKITLSLAYELIG 532
L ++ K+T Y G
Sbjct: 219 LQSTNMAFGKVTEETVYTCTG 239
>UNIPROTKB|E2RCF4 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 KO:K10756 GO:GO:0017111
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075072
OMA:ILACARQ CTD:5985 EMBL:AAEX03014719 RefSeq:XP_534696.3
ProteinModelPortal:E2RCF4 Ensembl:ENSCAFT00000015721 GeneID:477499
KEGG:cfa:477499 NextBio:20852966 Uniprot:E2RCF4
Length = 339
Score = 123 (48.4 bits), Expect = 0.00029, P = 0.00029
Identities = 48/201 (23%), Positives = 84/201 (41%)
Query: 333 LFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRS 392
L +GP GTGKTS I A A L K G ++ + D + +D VR
Sbjct: 56 LLYGPPGTGKTST--ILACAKQ---LYKDKEFG-----SMVLELNASDDRGIDIVR---- 101
Query: 393 DRVGSLMKSAFLPP-FSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELD 451
G ++ A F FK+ I+DE + + + +E +++ F +I L
Sbjct: 102 ---GPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLS 158
Query: 452 KLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEML 511
K+ + SR ++ F + + RL + EE ++ + + + S+G +R A +
Sbjct: 159 KIIPALQSRCTRFRFGPLTPELMVPRLEHVVGEEKVDLSEDGMKALVTLSSGDMRRALNI 218
Query: 512 LDQLSLLGKKITLSLAYELIG 532
L ++ K+T Y G
Sbjct: 219 LQSTNMAFGKVTEETVYTCTG 239
>MGI|MGI:1919401 [details] [associations]
symbol:Rfc5 "replication factor C (activator 1) 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 MGI:MGI:1919401
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 KO:K10756
GO:GO:0017111 eggNOG:COG0470 SUPFAM:SSF48019 GO:GO:0005663
HOVERGEN:HBG002053 Pfam:PF08542 HOGENOM:HOG000224152
GeneTree:ENSGT00550000075072 OMA:ILACARQ CTD:5985 EMBL:AK011489
IPI:IPI00132481 RefSeq:NP_082404.1 UniGene:Mm.27997
ProteinModelPortal:Q9D0F6 SMR:Q9D0F6 STRING:Q9D0F6
PhosphoSite:Q9D0F6 PaxDb:Q9D0F6 PRIDE:Q9D0F6
Ensembl:ENSMUST00000086461 GeneID:72151 KEGG:mmu:72151
InParanoid:Q9D0F6 OrthoDB:EOG4RBQJX NextBio:335574 Bgee:Q9D0F6
CleanEx:MM_RFC5 Genevestigator:Q9D0F6 GermOnline:ENSMUSG00000029363
Uniprot:Q9D0F6
Length = 339
Score = 123 (48.4 bits), Expect = 0.00029, P = 0.00029
Identities = 48/201 (23%), Positives = 84/201 (41%)
Query: 333 LFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRS 392
L +GP GTGKTS I A A L K G ++ + D + +D VR
Sbjct: 56 LLYGPPGTGKTST--ILACAKQ---LYKDKEFG-----SMVLELNASDDRGIDIVR---- 101
Query: 393 DRVGSLMKSAFLPP-FSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELD 451
G ++ A F FK+ I+DE + + + +E +++ F +I L
Sbjct: 102 ---GPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLS 158
Query: 452 KLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEML 511
K+ + SR ++ F + + RL + EE ++ + + + S+G +R A +
Sbjct: 159 KIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENVDISEDGMKALVTLSSGDMRRALNI 218
Query: 512 LDQLSLLGKKITLSLAYELIG 532
L ++ K+T Y G
Sbjct: 219 LQSTNMAFGKVTEETVYTCTG 239
>UNIPROTKB|P40937 [details] [associations]
symbol:RFC5 "Replication factor C subunit 5" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0019899 "enzyme binding" evidence=NAS]
[GO:0006260 "DNA replication" evidence=NAS;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0006281 "DNA repair"
evidence=NAS;TAS] [GO:0005663 "DNA replication factor C complex"
evidence=IDA] [GO:0000722 "telomere maintenance via recombination"
evidence=TAS] [GO:0000723 "telomere maintenance" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006271 "DNA strand
elongation involved in DNA replication" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0000075 "cell cycle checkpoint"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
Reactome:REACT_216 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 Reactome:REACT_115566 GO:GO:0005654 GO:GO:0003677
GO:GO:0019899 KO:K10756 GO:GO:0017111 GO:GO:0000084 eggNOG:COG0470
GO:GO:0000075 GO:GO:0000722 Reactome:REACT_383 GO:GO:0006283
GO:GO:0006271 GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019
GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542 HOGENOM:HOG000224152
OMA:ILACARQ EMBL:L07540 EMBL:AY254323 EMBL:AK094575 EMBL:AC131159
EMBL:BC001866 EMBL:BC013961 IPI:IPI00031514 IPI:IPI00925306
RefSeq:NP_001123584.1 RefSeq:NP_031396.1 RefSeq:NP_853556.2
UniGene:Hs.731908 PDB:1LFS PDBsum:1LFS ProteinModelPortal:P40937
SMR:P40937 DIP:DIP-36433N IntAct:P40937 MINT:MINT-1372754
STRING:P40937 PhosphoSite:P40937 DMDM:728777 PaxDb:P40937
PRIDE:P40937 DNASU:5985 Ensembl:ENST00000392542
Ensembl:ENST00000454402 GeneID:5985 KEGG:hsa:5985 UCSC:uc001twq.3
CTD:5985 GeneCards:GC12P118454 HGNC:HGNC:9973 HPA:HPA041037
MIM:600407 neXtProt:NX_P40937 PharmGKB:PA34342 InParanoid:P40937
PhylomeDB:P40937 GenomeRNAi:5985 NextBio:23303 ArrayExpress:P40937
Bgee:P40937 CleanEx:HS_RFC5 Genevestigator:P40937
GermOnline:ENSG00000111445 Uniprot:P40937
Length = 340
Score = 123 (48.4 bits), Expect = 0.00029, P = 0.00029
Identities = 47/201 (23%), Positives = 84/201 (41%)
Query: 333 LFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRS 392
L +GP GTGKTS I A A L K G ++ + D + +D +R
Sbjct: 57 LLYGPPGTGKTST--ILACAKQ---LYKDKEFG-----SMVLELNASDDRGIDIIR---- 102
Query: 393 DRVGSLMKSAFLPP-FSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELD 451
G ++ A F FK+ I+DE + + + +E +++ F +I L
Sbjct: 103 ---GPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLS 159
Query: 452 KLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEML 511
K+ + SR ++ F + + RL + EE ++ + + + S+G +R A +
Sbjct: 160 KIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNI 219
Query: 512 LDQLSLLGKKITLSLAYELIG 532
L ++ K+T Y G
Sbjct: 220 LQSTNMAFGKVTEETVYTCTG 240
>UNIPROTKB|F1RKG3 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000075072 OMA:ILACARQ
EMBL:CU468330 Ensembl:ENSSSCT00000010801 Uniprot:F1RKG3
Length = 354
Score = 123 (48.4 bits), Expect = 0.00031, P = 0.00031
Identities = 48/201 (23%), Positives = 84/201 (41%)
Query: 333 LFHGPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRS 392
L +GP GTGKTS I A A L K G ++ + D + +D VR
Sbjct: 71 LLYGPPGTGKTST--ILACAKQ---LYKDKEFG-----SMVLELNASDDRGIDIVR---- 116
Query: 393 DRVGSLMKSAFLPP-FSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELD 451
G ++ A F FK+ I+DE + + + +E +++ F +I L
Sbjct: 117 ---GPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLS 173
Query: 452 KLPRSALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIRDAEML 511
K+ + SR ++ F + + RL + EE ++ + + + S+G +R A +
Sbjct: 174 KIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALITLSSGDMRRALNI 233
Query: 512 LDQLSLLGKKITLSLAYELIG 532
L ++ K+T Y G
Sbjct: 234 LQSTNMAFGKVTEETVYTCTG 254
>FB|FBgn0260985 [details] [associations]
symbol:RfC4 "Replication factor C subunit 4" species:7227
"Drosophila melanogaster" [GO:0007076 "mitotic chromosome
condensation" evidence=IMP;NAS] [GO:0000819 "sister chromatid
segregation" evidence=NAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006271 "DNA strand elongation involved in DNA replication"
evidence=NAS;TAS] [GO:0006260 "DNA replication"
evidence=ISS;NAS;TAS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS;NAS] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISS] [GO:0003677 "DNA binding" evidence=IEA;NAS]
[GO:0016321 "female meiosis chromosome segregation" evidence=IMP]
[GO:0007067 "mitosis" evidence=IMP] [GO:0005634 "nucleus"
evidence=NAS;IDA] [GO:0000077 "DNA damage checkpoint" evidence=IMP]
[GO:0000076 "DNA replication checkpoint" evidence=IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005875 "microtubule associated
complex" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005634 GO:GO:0000077
GO:GO:0005875 EMBL:AE014296 GO:GO:0022008 GO:GO:0003677
GO:GO:0006281 GO:GO:0046331 GO:GO:0017111 GO:GO:0007076 KO:K10755
eggNOG:COG0470 GO:GO:0016321 GO:GO:0000076 GO:GO:0006271
SUPFAM:SSF48019 EMBL:U15967 GeneTree:ENSGT00550000075050
OMA:IQCLARI Pfam:PF08542 EMBL:AY094829 PIR:S55020
RefSeq:NP_523915.1 UniGene:Dm.839 ProteinModelPortal:P53034
SMR:P53034 DIP:DIP-22077N IntAct:P53034 MINT:MINT-925288
STRING:P53034 PaxDb:P53034 PRIDE:P53034 EnsemblMetazoa:FBtr0073264
GeneID:38492 KEGG:dme:Dmel_CG14999 CTD:5984 FlyBase:FBgn0260985
InParanoid:P53034 OrthoDB:EOG4P8D0Q PhylomeDB:P53034
GenomeRNAi:38492 NextBio:808930 Bgee:P53034 GermOnline:CG14999
Uniprot:P53034
Length = 331
Score = 90 (36.7 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 41/171 (23%), Positives = 69/171 (40%)
Query: 336 GPRGTGKTSASRIFAAALNCLSLEDQKPCGLCRECALFSSGRSRDVKEVDSVRINRSDRV 395
GP G GKT+ + A L L D +E A+ S + + +D VR N+
Sbjct: 56 GPPGVGKTTTIQCLARIL----LGDSY-----KE-AVLELNASNE-RGIDVVR-NKIKMF 103
Query: 396 GSLMKSAFLPPFSSRFKIFIIDECQLLHGETWATVLNSLENISQHVVFVMITPELDKLPR 455
+ LP R KI I+DE + + ++E S F + +K+
Sbjct: 104 AQ--QKVTLP--RGRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIE 159
Query: 456 SALSRSQKYHFPKIKDGDIASRLRRICVEEAINFDQAALDFIAAKSNGSIR 506
SR F K+ D + ++L + E +N+ + L+ I + G +R
Sbjct: 160 PIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMR 210
Score = 77 (32.2 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 21/63 (33%), Positives = 30/63 (47%)
Query: 291 SETPWSLSQKFRPNFFDELVGQNVVVRSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFA 350
S PW +K+RP F E+VG V L ++G + + GP G GKT+ + A
Sbjct: 14 SHLPWI--EKYRPVKFKEIVGNEDTVARLSVFATQGNAPNI-IIAGPPGVGKTTTIQCLA 70
Query: 351 AAL 353
L
Sbjct: 71 RIL 73
>UNIPROTKB|C9JXZ7 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003959 Pfam:PF00004 GO:GO:0005524 EMBL:AC112907
HGNC:HGNC:9972 ChiTaRS:RFC4 IPI:IPI00795756
ProteinModelPortal:C9JXZ7 SMR:C9JXZ7 STRING:C9JXZ7
Ensembl:ENST00000427785 HOGENOM:HOG000185875 ArrayExpress:C9JXZ7
Bgee:C9JXZ7 Uniprot:C9JXZ7
Length = 123
Score = 99 (39.9 bits), Expect = 0.00061, P = 0.00061
Identities = 33/96 (34%), Positives = 46/96 (47%)
Query: 257 SDLEDNPLLSGEIGETAHYGRSGHKLINNEISTYSETPWSLSQKFRPNFFDELVGQNVVV 316
+ + P L+ + G A G SG N + PW +K+RP DE+ Q VV
Sbjct: 8 TSISTKPPLTKDRGVAASAGSSGE---NKKAKP---VPWV--EKYRPKCVDEVAFQEEVV 59
Query: 317 RSLLSAISRGMVTSFYLFHGPRGTGKTSASRIFAAA 352
L ++ + + LF+GP GTGKTS I AAA
Sbjct: 60 AVLKKSLEGADLPNL-LFYGPPGTGKTST--ILAAA 92
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.131 0.391 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1018 982 0.00098 122 3 11 22 0.40 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 75
No. of states in DFA: 631 (67 KB)
Total size of DFA: 488 KB (2227 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 85.82u 0.10s 85.92t Elapsed: 00:00:05
Total cpu time: 85.84u 0.10s 85.94t Elapsed: 00:00:05
Start: Mon May 20 17:03:11 2013 End: Mon May 20 17:03:16 2013